Query 047158
Match_columns 212
No_of_seqs 203 out of 1291
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 08:15:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047158.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047158hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 8.1E-37 1.8E-41 274.6 15.2 202 7-209 247-496 (889)
2 PLN03210 Resistant to P. syrin 100.0 1.1E-33 2.3E-38 263.8 20.1 198 12-211 287-505 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 2.5E-29 5.4E-34 202.8 7.6 170 4-174 84-284 (287)
4 PRK04841 transcriptional regul 99.1 6.5E-09 1.4E-13 96.2 17.3 189 11-208 109-332 (903)
5 COG3903 Predicted ATPase [Gene 98.2 6.5E-07 1.4E-11 74.1 1.1 195 9-209 76-315 (414)
6 TIGR00635 ruvB Holliday juncti 98.1 2.6E-05 5.7E-10 63.5 9.5 143 49-194 130-294 (305)
7 PRK00080 ruvB Holliday junctio 98.0 5E-05 1.1E-09 62.7 9.8 142 49-193 151-314 (328)
8 COG2909 MalT ATP-dependent tra 97.6 0.0013 2.9E-08 59.4 11.8 192 7-210 113-340 (894)
9 PF05729 NACHT: NACHT domain 97.3 0.00067 1.5E-08 49.6 5.9 71 19-89 79-163 (166)
10 PF01637 Arch_ATPase: Archaeal 97.1 0.0027 6E-08 49.0 7.6 105 9-115 104-229 (234)
11 PRK00411 cdc6 cell division co 96.3 0.13 2.7E-06 43.5 12.5 182 7-189 122-358 (394)
12 TIGR03015 pepcterm_ATPase puta 96.2 0.086 1.9E-06 41.9 10.7 97 19-116 121-234 (269)
13 PRK06893 DNA replication initi 96.2 0.014 3.1E-07 45.6 6.0 71 22-92 92-177 (229)
14 TIGR00678 holB DNA polymerase 95.8 0.086 1.9E-06 39.7 8.5 88 20-115 95-186 (188)
15 PRK07471 DNA polymerase III su 95.7 0.059 1.3E-06 45.2 7.9 91 20-116 140-234 (365)
16 COG3899 Predicted ATPase [Gene 95.4 0.41 8.9E-06 44.7 13.0 191 13-207 145-385 (849)
17 PRK05564 DNA polymerase III su 95.1 0.16 3.6E-06 41.5 8.4 90 21-116 93-186 (313)
18 PF13173 AAA_14: AAA domain 95.0 0.054 1.2E-06 38.2 4.7 69 12-80 52-126 (128)
19 PRK09112 DNA polymerase III su 94.9 0.2 4.3E-06 41.8 8.4 93 20-116 140-236 (351)
20 PRK07003 DNA polymerase III su 94.2 0.24 5.2E-06 45.3 7.9 93 20-114 118-214 (830)
21 PRK06645 DNA polymerase III su 94.0 0.42 9.1E-06 41.9 8.9 94 20-115 127-224 (507)
22 PRK14963 DNA polymerase III su 94.0 0.36 7.9E-06 42.3 8.5 94 20-115 115-212 (504)
23 PRK13342 recombination factor 93.8 0.53 1.2E-05 40.2 9.1 95 19-116 90-192 (413)
24 TIGR02397 dnaX_nterm DNA polym 93.7 0.42 9.1E-06 39.6 8.2 95 20-116 116-214 (355)
25 COG2256 MGS1 ATPase related to 93.4 0.47 1E-05 40.0 7.7 83 4-89 86-176 (436)
26 PRK05707 DNA polymerase III su 93.4 0.55 1.2E-05 38.9 8.2 89 22-116 107-199 (328)
27 PRK14961 DNA polymerase III su 93.0 0.72 1.6E-05 38.7 8.4 95 20-116 118-216 (363)
28 TIGR02928 orc1/cdc6 family rep 92.9 4.8 0.0001 33.5 15.0 182 8-190 114-351 (365)
29 TIGR03420 DnaA_homol_Hda DnaA 92.8 0.35 7.6E-06 37.3 6.0 90 23-114 92-195 (226)
30 PRK07994 DNA polymerase III su 92.6 0.6 1.3E-05 42.1 7.7 96 19-116 117-216 (647)
31 PRK12323 DNA polymerase III su 92.4 0.6 1.3E-05 42.1 7.3 96 19-116 122-221 (700)
32 PRK08769 DNA polymerase III su 92.2 3 6.4E-05 34.4 10.8 89 20-116 112-204 (319)
33 PRK07940 DNA polymerase III su 91.6 1.3 2.8E-05 37.7 8.3 90 20-116 116-209 (394)
34 PRK09087 hypothetical protein; 91.6 0.89 1.9E-05 35.5 6.9 66 23-90 89-167 (226)
35 PRK08727 hypothetical protein; 91.4 0.82 1.8E-05 35.8 6.5 69 22-90 94-176 (233)
36 PRK14949 DNA polymerase III su 91.3 1.1 2.3E-05 42.0 7.9 95 19-115 117-215 (944)
37 PRK14957 DNA polymerase III su 90.7 1.9 4.1E-05 38.3 8.7 93 20-114 118-214 (546)
38 PLN03025 replication factor C 90.2 2.2 4.8E-05 35.0 8.3 93 20-114 98-194 (319)
39 PRK14956 DNA polymerase III su 90.2 2.1 4.6E-05 37.3 8.4 96 19-116 119-218 (484)
40 PRK12402 replication factor C 90.0 2.7 5.9E-05 34.4 8.8 92 21-114 125-220 (337)
41 PRK14960 DNA polymerase III su 89.9 2.2 4.7E-05 38.7 8.4 94 20-115 117-214 (702)
42 PRK13341 recombination factor 89.5 3 6.6E-05 38.3 9.2 67 20-89 108-181 (725)
43 PRK14951 DNA polymerase III su 89.3 2.4 5.2E-05 38.2 8.3 93 21-115 124-220 (618)
44 PRK06964 DNA polymerase III su 89.3 2.8 6E-05 34.9 8.2 86 21-116 132-221 (342)
45 PRK06090 DNA polymerase III su 89.2 3.6 7.8E-05 33.9 8.7 86 21-116 108-197 (319)
46 PRK06871 DNA polymerase III su 89.2 4.2 9.1E-05 33.6 9.1 90 20-116 106-199 (325)
47 PRK09111 DNA polymerase III su 89.1 2.1 4.5E-05 38.5 7.8 95 20-116 131-229 (598)
48 PRK08691 DNA polymerase III su 89.0 1 2.2E-05 41.0 5.7 95 20-116 118-216 (709)
49 PRK14971 DNA polymerase III su 88.0 3.3 7.2E-05 37.4 8.4 93 20-114 120-216 (614)
50 PRK14959 DNA polymerase III su 87.9 3.6 7.9E-05 37.1 8.5 93 20-114 118-214 (624)
51 PRK14964 DNA polymerase III su 87.9 3.3 7.1E-05 36.3 8.0 94 20-115 115-212 (491)
52 PRK08084 DNA replication initi 87.8 2.6 5.6E-05 33.0 6.9 67 23-90 99-181 (235)
53 COG1373 Predicted ATPase (AAA+ 87.8 15 0.00033 31.2 11.9 161 21-188 94-269 (398)
54 PRK14950 DNA polymerase III su 87.7 3.6 7.7E-05 36.9 8.4 95 20-116 119-217 (585)
55 PRK06305 DNA polymerase III su 87.6 3.5 7.6E-05 35.7 8.1 93 20-114 120-216 (451)
56 PRK07764 DNA polymerase III su 87.5 3.6 7.9E-05 38.4 8.5 94 20-115 119-216 (824)
57 cd00561 CobA_CobO_BtuR ATP:cor 86.8 1.8 4E-05 31.8 5.1 51 10-60 83-139 (159)
58 PRK07399 DNA polymerase III su 86.3 4.5 9.8E-05 33.2 7.7 91 20-116 123-217 (314)
59 PRK14955 DNA polymerase III su 86.2 3.4 7.3E-05 35.1 7.1 94 20-115 126-223 (397)
60 PRK14970 DNA polymerase III su 86.1 3.9 8.5E-05 34.2 7.4 93 20-114 107-203 (367)
61 PRK07993 DNA polymerase III su 86.1 6.1 0.00013 32.8 8.4 90 20-116 107-200 (334)
62 PRK14954 DNA polymerase III su 86.1 8.3 0.00018 34.9 9.7 93 20-114 126-222 (620)
63 PRK00440 rfc replication facto 86.0 2.9 6.3E-05 33.9 6.5 93 22-116 103-199 (319)
64 TIGR01242 26Sp45 26S proteasom 86.0 7.4 0.00016 32.6 9.0 91 21-114 215-328 (364)
65 PRK07133 DNA polymerase III su 85.6 5.9 0.00013 36.4 8.6 93 20-114 117-213 (725)
66 PRK14962 DNA polymerase III su 85.6 4.9 0.00011 35.0 7.9 91 20-112 116-210 (472)
67 PRK08451 DNA polymerase III su 85.5 5.5 0.00012 35.3 8.2 94 20-115 116-213 (535)
68 PRK06620 hypothetical protein; 85.3 2.9 6.4E-05 32.3 5.9 67 22-90 86-161 (214)
69 PRK14958 DNA polymerase III su 85.1 3.4 7.3E-05 36.4 6.7 95 20-116 118-216 (509)
70 PRK04132 replication factor C 84.5 10 0.00022 35.6 9.8 93 22-116 631-727 (846)
71 PRK05896 DNA polymerase III su 84.2 5.2 0.00011 36.0 7.5 93 21-115 119-215 (605)
72 PF14516 AAA_35: AAA-like doma 83.0 6.7 0.00014 32.5 7.4 43 68-116 193-235 (331)
73 PF02463 SMC_N: RecF/RecN/SMC 83.0 0.95 2.1E-05 34.8 2.3 45 21-65 158-205 (220)
74 PRK14952 DNA polymerase III su 82.6 12 0.00026 33.6 9.2 93 20-114 117-213 (584)
75 PRK14969 DNA polymerase III su 82.1 4.2 9E-05 36.0 6.1 94 20-115 118-215 (527)
76 smart00346 HTH_ICLR helix_turn 81.5 8.2 0.00018 24.9 6.1 64 146-209 10-74 (91)
77 PRK14087 dnaA chromosomal repl 81.2 4.9 0.00011 34.8 6.1 93 22-114 207-313 (450)
78 PRK04195 replication factor C 80.9 6.7 0.00014 34.3 6.9 89 21-113 98-195 (482)
79 PRK14948 DNA polymerase III su 80.1 13 0.00027 33.8 8.5 95 20-116 120-218 (620)
80 PRK05642 DNA replication initi 80.1 7.6 0.00017 30.3 6.5 66 24-89 100-179 (234)
81 PRK14965 DNA polymerase III su 79.8 8.7 0.00019 34.5 7.4 92 21-114 119-214 (576)
82 PRK14953 DNA polymerase III su 79.1 17 0.00038 31.9 8.9 94 20-115 118-215 (486)
83 TIGR00708 cobA cob(I)alamin ad 77.6 6.5 0.00014 29.4 5.0 53 8-60 83-141 (173)
84 PRK06647 DNA polymerase III su 77.5 20 0.00043 32.1 8.9 94 20-115 118-215 (563)
85 TIGR02903 spore_lon_C ATP-depe 77.3 7.7 0.00017 35.1 6.3 81 10-90 281-367 (615)
86 KOG0989 Replication factor C, 77.0 6.2 0.00013 32.4 5.1 88 23-112 131-222 (346)
87 PRK08903 DnaA regulatory inact 76.1 8.6 0.00019 29.7 5.7 68 22-89 91-170 (227)
88 PRK08699 DNA polymerase III su 75.9 14 0.00031 30.5 7.1 83 24-116 116-202 (325)
89 PF00308 Bac_DnaA: Bacterial d 75.8 3 6.5E-05 32.3 3.0 69 23-91 99-181 (219)
90 PRK05986 cob(I)alamin adenolsy 75.2 4.6 0.0001 30.7 3.8 53 8-60 101-159 (191)
91 PRK07414 cob(I)yrinic acid a,c 74.1 9 0.0002 28.8 5.0 52 9-60 102-159 (178)
92 PRK14086 dnaA chromosomal repl 72.0 21 0.00045 32.3 7.6 68 24-91 380-461 (617)
93 TIGR01610 phage_O_Nterm phage 71.1 12 0.00026 24.8 4.7 64 133-197 18-89 (95)
94 PF13401 AAA_22: AAA domain; P 70.8 8.9 0.00019 26.4 4.2 51 6-58 71-125 (131)
95 PRK05563 DNA polymerase III su 69.4 30 0.00064 31.0 8.0 94 20-115 118-215 (559)
96 TIGR02880 cbbX_cfxQ probable R 69.4 15 0.00033 29.6 5.8 69 22-90 122-209 (284)
97 PRK08058 DNA polymerase III su 69.2 17 0.00037 30.0 6.2 69 20-88 109-181 (329)
98 COG2109 BtuR ATP:corrinoid ade 68.6 12 0.00025 28.5 4.5 51 9-59 109-165 (198)
99 cd00009 AAA The AAA+ (ATPases 67.2 14 0.00029 25.4 4.6 42 19-60 82-131 (151)
100 PF02572 CobA_CobO_BtuR: ATP:c 66.5 8.9 0.00019 28.6 3.6 50 8-60 82-140 (172)
101 PF13730 HTH_36: Helix-turn-he 66.5 8.4 0.00018 22.3 2.9 49 137-186 2-55 (55)
102 PRK08485 DNA polymerase III su 63.3 67 0.0015 24.7 8.3 81 5-87 40-137 (206)
103 TIGR01128 holA DNA polymerase 62.5 79 0.0017 25.3 8.9 95 20-116 45-149 (302)
104 PRK10141 DNA-binding transcrip 62.1 25 0.00054 24.4 4.9 72 134-206 9-83 (117)
105 COG3355 Predicted transcriptio 60.8 20 0.00042 25.3 4.2 62 127-190 15-76 (126)
106 CHL00176 ftsH cell division pr 60.7 1.1E+02 0.0024 28.0 10.0 101 13-116 267-390 (638)
107 PF12802 MarR_2: MarR family; 60.4 9.2 0.0002 22.6 2.3 51 140-190 4-55 (62)
108 PF00004 AAA: ATPase family as 60.2 42 0.0009 22.8 6.0 22 11-32 47-69 (132)
109 TIGR02881 spore_V_K stage V sp 59.4 68 0.0015 25.3 7.7 69 22-90 106-192 (261)
110 TIGR00362 DnaA chromosomal rep 58.3 28 0.00061 29.6 5.7 69 23-91 201-283 (405)
111 KOG0741 AAA+-type ATPase [Post 58.1 79 0.0017 28.4 8.1 76 13-88 590-685 (744)
112 smart00419 HTH_CRP helix_turn_ 56.4 16 0.00035 20.1 2.8 40 157-197 9-48 (48)
113 PRK14088 dnaA chromosomal repl 56.3 51 0.0011 28.5 6.9 70 21-90 194-277 (440)
114 PF13177 DNA_pol3_delta2: DNA 55.1 10 0.00022 27.8 2.2 41 21-61 102-144 (162)
115 TIGR01241 FtsH_fam ATP-depende 54.9 1.5E+02 0.0032 26.0 10.1 102 12-116 138-262 (495)
116 PRK07132 DNA polymerase III su 54.6 65 0.0014 26.4 6.9 69 20-88 89-161 (299)
117 PRK07276 DNA polymerase III su 53.7 1.1E+02 0.0024 24.9 8.1 66 20-86 103-172 (290)
118 PF06144 DNA_pol3_delta: DNA p 52.9 54 0.0012 23.7 5.9 92 21-114 57-160 (172)
119 PF07693 KAP_NTPase: KAP famil 52.7 56 0.0012 26.5 6.4 56 8-63 157-218 (325)
120 PHA02544 44 clamp loader, smal 52.7 55 0.0012 26.5 6.4 67 21-87 100-171 (316)
121 PRK00149 dnaA chromosomal repl 52.5 32 0.00069 29.7 5.1 69 22-90 212-294 (450)
122 PRK07413 hypothetical protein; 51.4 38 0.00083 28.7 5.2 52 10-61 113-170 (382)
123 PRK03992 proteasome-activating 51.3 1.5E+02 0.0033 25.1 10.1 72 20-91 223-317 (389)
124 PTZ00454 26S protease regulato 50.6 1.3E+02 0.0027 25.8 8.3 96 18-116 235-353 (398)
125 PF13304 AAA_21: AAA domain; P 50.5 22 0.00047 27.0 3.6 39 23-61 259-301 (303)
126 PRK07413 hypothetical protein; 49.5 30 0.00064 29.4 4.3 51 8-58 291-347 (382)
127 cd03244 ABCC_MRP_domain2 Domai 48.6 65 0.0014 24.5 5.9 59 13-73 149-210 (221)
128 PRK12422 chromosomal replicati 48.5 80 0.0017 27.4 6.9 69 22-90 203-285 (445)
129 PF02082 Rrf2: Transcriptional 48.2 28 0.00061 22.2 3.2 52 144-195 11-66 (83)
130 PRK11569 transcriptional repre 46.9 73 0.0016 25.5 6.1 54 154-207 41-95 (274)
131 CHL00181 cbbX CbbX; Provisiona 46.8 1.6E+02 0.0034 23.9 9.4 70 22-91 123-211 (287)
132 COG0396 sufC Cysteine desulfur 46.4 57 0.0012 25.8 5.1 62 9-70 150-215 (251)
133 COG2812 DnaX DNA polymerase II 46.1 1.1E+02 0.0023 27.3 7.2 87 24-112 122-212 (515)
134 cd03228 ABCC_MRP_Like The MRP 45.6 77 0.0017 23.1 5.7 56 13-73 106-167 (171)
135 PRK09834 DNA-binding transcrip 44.9 80 0.0017 25.0 6.0 53 154-206 24-77 (263)
136 COG1414 IclR Transcriptional r 44.9 84 0.0018 24.8 6.0 61 147-207 10-71 (246)
137 PF09114 MotA_activ: Transcrip 44.5 91 0.002 20.6 5.6 79 129-211 5-90 (96)
138 PF00392 GntR: Bacterial regul 44.3 28 0.0006 20.9 2.6 38 157-194 24-62 (64)
139 PF14394 DUF4423: Domain of un 44.0 59 0.0013 24.2 4.8 37 158-194 41-79 (171)
140 cd03249 ABC_MTABC3_MDL1_MDL2 M 43.7 75 0.0016 24.5 5.6 59 13-73 149-210 (238)
141 cd00092 HTH_CRP helix_turn_hel 43.3 28 0.00061 20.7 2.6 41 157-197 26-66 (67)
142 cd03251 ABCC_MsbA MsbA is an e 43.1 95 0.0021 23.8 6.1 59 13-73 148-209 (234)
143 cd03247 ABCC_cytochrome_bd The 42.6 82 0.0018 23.1 5.5 60 12-73 107-169 (178)
144 PF09860 DUF2087: Uncharacteri 42.0 86 0.0019 19.6 4.8 52 144-195 14-69 (71)
145 PRK13539 cytochrome c biogenes 41.8 53 0.0012 24.8 4.4 61 13-76 137-201 (207)
146 TIGR02431 pcaR_pcaU beta-ketoa 41.5 1E+02 0.0022 24.1 6.1 53 154-207 22-74 (248)
147 cd03253 ABCC_ATM1_transporter 40.6 92 0.002 24.0 5.7 60 12-73 146-208 (236)
148 CHL00195 ycf46 Ycf46; Provisio 40.4 2E+02 0.0043 25.4 8.1 96 19-115 316-430 (489)
149 TIGR00611 recf recF protein. A 40.4 40 0.00087 28.4 3.8 43 19-63 300-345 (365)
150 PRK11081 tRNA guanosine-2'-O-m 40.3 41 0.00088 26.4 3.5 77 10-86 5-87 (229)
151 PRK07452 DNA polymerase III su 40.1 1.8E+02 0.0039 23.7 7.6 95 20-116 60-168 (326)
152 PF02197 RIIa: Regulatory subu 39.3 22 0.00047 19.2 1.4 17 196-212 3-19 (38)
153 PRK06581 DNA polymerase III su 39.3 2E+02 0.0043 23.1 7.1 71 20-90 88-162 (263)
154 PF02562 PhoH: PhoH-like prote 39.0 46 0.001 25.6 3.6 38 17-57 112-154 (205)
155 TIGR02324 CP_lyasePhnL phospho 38.7 80 0.0017 24.1 5.0 61 13-74 159-223 (224)
156 PRK10536 hypothetical protein; 37.8 32 0.0007 27.5 2.7 38 17-57 169-211 (262)
157 PRK14249 phosphate ABC transpo 37.1 96 0.0021 24.2 5.3 53 13-65 157-212 (251)
158 PF05763 DUF835: Protein of un 37.0 64 0.0014 23.0 3.9 54 4-57 57-119 (136)
159 PF05673 DUF815: Protein of un 36.7 1.1E+02 0.0024 24.4 5.4 57 6-64 93-156 (249)
160 PF13545 HTH_Crp_2: Crp-like h 36.6 26 0.00057 21.6 1.7 43 156-199 28-70 (76)
161 CHL00195 ycf46 Ycf46; Provisio 35.9 2.5E+02 0.0054 24.8 8.0 104 9-116 69-180 (489)
162 cd03369 ABCC_NFT1 Domain 2 of 35.8 1.3E+02 0.0028 22.6 5.7 59 13-73 135-196 (207)
163 PF13412 HTH_24: Winged helix- 35.8 45 0.00098 18.5 2.5 45 142-187 4-48 (48)
164 cd03254 ABCC_Glucan_exporter_l 35.6 1.3E+02 0.0028 23.0 5.8 60 12-73 148-210 (229)
165 cd03252 ABCC_Hemolysin The ABC 35.6 1.2E+02 0.0026 23.4 5.6 59 13-73 148-209 (237)
166 PF01937 DUF89: Protein of unk 35.5 56 0.0012 27.4 3.9 66 13-89 175-245 (355)
167 PRK14269 phosphate ABC transpo 35.3 1.1E+02 0.0023 23.9 5.3 54 11-64 150-206 (246)
168 PRK14253 phosphate ABC transpo 35.2 94 0.002 24.2 5.0 50 13-65 155-210 (249)
169 TIGR03411 urea_trans_UrtD urea 35.2 85 0.0018 24.3 4.7 53 13-65 153-208 (242)
170 TIGR01243 CDC48 AAA family ATP 35.2 2.6E+02 0.0056 26.0 8.4 95 19-116 544-659 (733)
171 PRK10163 DNA-binding transcrip 34.5 1.6E+02 0.0035 23.5 6.3 52 156-207 40-92 (271)
172 PRK08116 hypothetical protein; 34.0 39 0.00085 27.0 2.6 42 16-58 174-220 (268)
173 cd03245 ABCC_bacteriocin_expor 33.8 1.6E+02 0.0034 22.4 5.9 59 13-73 150-211 (220)
174 PF01978 TrmB: Sugar-specific 33.6 16 0.00035 22.2 0.3 51 140-191 7-57 (68)
175 PF09339 HTH_IclR: IclR helix- 33.5 38 0.00083 19.3 1.9 36 154-189 16-51 (52)
176 KOG2035 Replication factor C, 33.4 1.8E+02 0.0039 24.0 6.1 88 24-113 130-221 (351)
177 PRK14247 phosphate ABC transpo 33.2 1.1E+02 0.0023 23.9 5.0 52 13-64 156-210 (250)
178 KOG0927 Predicted transporter 33.2 93 0.002 27.9 4.8 68 5-74 223-293 (614)
179 PF10236 DAP3: Mitochondrial r 33.1 1.2E+02 0.0026 24.9 5.4 45 70-114 258-303 (309)
180 PRK11920 rirA iron-responsive 32.9 72 0.0016 23.1 3.7 54 142-195 9-65 (153)
181 cd03263 ABC_subfamily_A The AB 32.9 1E+02 0.0022 23.4 4.7 53 13-65 143-198 (220)
182 COG0497 RecN ATPase involved i 32.7 2.3E+02 0.005 25.5 7.2 79 13-91 443-537 (557)
183 COG0593 DnaA ATPase involved i 32.6 2E+02 0.0043 24.8 6.7 69 22-90 176-258 (408)
184 PRK14245 phosphate ABC transpo 32.6 1.1E+02 0.0023 23.9 4.9 60 13-73 156-218 (250)
185 cd03241 ABC_RecN RecN ATPase i 32.3 1.2E+02 0.0027 24.1 5.3 44 21-64 192-238 (276)
186 smart00345 HTH_GNTR helix_turn 32.2 95 0.0021 17.6 3.6 37 158-194 22-58 (60)
187 PRK10744 pstB phosphate transp 32.1 1.3E+02 0.0027 23.7 5.3 52 13-64 166-220 (260)
188 PRK14272 phosphate ABC transpo 32.0 1.2E+02 0.0025 23.7 5.0 52 13-64 158-212 (252)
189 PF12840 HTH_20: Helix-turn-he 31.8 23 0.00049 21.1 0.8 51 141-192 10-60 (61)
190 PRK14246 phosphate ABC transpo 31.7 1.1E+02 0.0025 24.0 4.9 60 13-73 163-225 (257)
191 cd03248 ABCC_TAP TAP, the Tran 31.7 1.7E+02 0.0036 22.3 5.8 60 13-74 160-222 (226)
192 cd03300 ABC_PotA_N PotA is an 31.6 78 0.0017 24.4 4.0 53 12-64 139-196 (232)
193 PRK04966 hypothetical protein; 31.2 95 0.0021 19.6 3.4 29 5-33 33-61 (72)
194 PRK14262 phosphate ABC transpo 31.0 1.2E+02 0.0025 23.7 4.9 49 13-64 156-210 (250)
195 TIGR03689 pup_AAA proteasome A 30.9 2.1E+02 0.0045 25.5 6.7 70 20-89 288-378 (512)
196 PRK14273 phosphate ABC transpo 30.8 1.2E+02 0.0027 23.6 5.0 50 13-65 160-215 (254)
197 TIGR02639 ClpA ATP-dependent C 30.4 2.5E+02 0.0054 26.1 7.5 30 14-43 545-577 (731)
198 smart00550 Zalpha Z-DNA-bindin 30.0 1.3E+02 0.0029 18.3 4.1 55 142-196 7-64 (68)
199 PRK11014 transcriptional repre 29.6 84 0.0018 22.3 3.5 46 145-190 12-59 (141)
200 PRK14235 phosphate transporter 29.4 1.3E+02 0.0029 23.8 5.0 53 13-65 173-228 (267)
201 cd03216 ABC_Carb_Monos_I This 29.3 1.4E+02 0.003 21.6 4.8 52 13-64 92-147 (163)
202 PRK08181 transposase; Validate 29.2 30 0.00064 27.8 1.2 38 22-59 168-209 (269)
203 PRK14236 phosphate transporter 29.0 1.2E+02 0.0027 24.0 4.8 49 13-64 178-232 (272)
204 PF09681 Phage_rep_org_N: N-te 29.0 82 0.0018 22.0 3.2 42 157-198 54-95 (121)
205 TIGR03740 galliderm_ABC gallid 28.9 1.1E+02 0.0024 23.3 4.4 53 13-65 134-190 (223)
206 cd03288 ABCC_SUR2 The SUR doma 28.7 1.8E+02 0.0038 22.8 5.6 59 13-73 166-227 (257)
207 CHL00131 ycf16 sulfate ABC tra 28.7 1.3E+02 0.0027 23.5 4.7 61 13-73 161-225 (252)
208 cd03257 ABC_NikE_OppD_transpor 28.6 1.1E+02 0.0023 23.4 4.2 60 13-73 155-219 (228)
209 cd03214 ABC_Iron-Siderophores_ 28.6 1.1E+02 0.0024 22.5 4.2 52 13-64 107-163 (180)
210 PRK14265 phosphate ABC transpo 28.5 1.5E+02 0.0032 23.6 5.1 61 13-74 171-234 (274)
211 PRK14274 phosphate ABC transpo 28.4 1.5E+02 0.0032 23.3 5.1 50 13-65 165-220 (259)
212 PRK14244 phosphate ABC transpo 27.8 1.3E+02 0.0028 23.4 4.7 49 13-64 159-213 (251)
213 cd03240 ABC_Rad50 The catalyti 27.7 83 0.0018 23.9 3.4 58 14-73 132-195 (204)
214 PRK14242 phosphate transporter 27.7 1.4E+02 0.003 23.3 4.8 52 13-64 159-213 (253)
215 PRK14267 phosphate ABC transpo 27.6 1.4E+02 0.0029 23.3 4.8 52 13-64 159-213 (253)
216 TIGR03522 GldA_ABC_ATP gliding 27.5 1.7E+02 0.0038 23.6 5.5 50 13-65 143-198 (301)
217 PRK14268 phosphate ABC transpo 27.5 1.3E+02 0.0029 23.6 4.7 53 13-65 164-219 (258)
218 cd03287 ABC_MSH3_euk MutS3 hom 27.4 1.3E+02 0.0028 23.4 4.4 45 20-65 109-160 (222)
219 PRK14237 phosphate transporter 27.4 1.4E+02 0.003 23.7 4.8 49 13-64 173-227 (267)
220 COG1959 Predicted transcriptio 27.3 81 0.0018 22.8 3.1 49 142-190 9-59 (150)
221 cd03235 ABC_Metallic_Cations A 27.3 1.6E+02 0.0035 22.1 5.0 60 13-73 142-205 (213)
222 TIGR03338 phnR_burk phosphonat 27.2 1.3E+02 0.0029 22.6 4.6 40 157-196 35-74 (212)
223 PRK14240 phosphate transporter 27.2 1.6E+02 0.0035 22.8 5.1 50 13-65 156-211 (250)
224 PF05496 RuvB_N: Holliday junc 27.2 2.2E+02 0.0047 22.5 5.6 104 7-114 89-215 (233)
225 cd03267 ABC_NatA_like Similar 27.1 1.3E+02 0.0028 23.3 4.5 52 13-65 163-220 (236)
226 PRK14251 phosphate ABC transpo 26.9 1.3E+02 0.0028 23.4 4.5 60 13-73 157-219 (251)
227 cd03215 ABC_Carb_Monos_II This 26.9 1.4E+02 0.0031 21.9 4.6 52 13-64 114-169 (182)
228 PF03849 Tfb2: Transcription f 26.8 1.5E+02 0.0032 25.1 5.0 70 135-206 25-100 (366)
229 cd03264 ABC_drug_resistance_li 26.7 1.7E+02 0.0036 22.0 5.0 50 13-65 140-195 (211)
230 PRK05629 hypothetical protein; 26.6 3.3E+02 0.0071 22.2 7.0 94 21-116 64-164 (318)
231 PRK14239 phosphate transporter 26.6 1.5E+02 0.0033 23.0 4.9 49 13-64 158-212 (252)
232 PRK14261 phosphate ABC transpo 26.4 1.4E+02 0.0031 23.2 4.7 49 13-64 159-213 (253)
233 PRK14252 phosphate ABC transpo 26.4 1.5E+02 0.0033 23.3 4.9 53 13-65 171-226 (265)
234 PF09840 DUF2067: Uncharacteri 26.3 1.4E+02 0.0031 22.6 4.4 33 164-196 147-179 (190)
235 PRK14258 phosphate ABC transpo 26.2 1.8E+02 0.0039 22.9 5.2 61 13-74 160-225 (261)
236 PF10443 RNA12: RNA12 protein; 26.2 3.9E+02 0.0085 23.2 7.4 66 22-91 149-231 (431)
237 PRK00304 hypothetical protein; 26.0 1.3E+02 0.0028 19.2 3.4 28 6-33 33-60 (75)
238 PRK14270 phosphate ABC transpo 26.0 1.4E+02 0.0031 23.2 4.6 50 13-65 157-212 (251)
239 COG1875 NYN ribonuclease and A 26.0 58 0.0012 27.7 2.3 37 17-56 344-385 (436)
240 PF13463 HTH_27: Winged helix 26.0 48 0.001 19.7 1.5 34 156-189 18-51 (68)
241 cd03289 ABCC_CFTR2 The CFTR su 25.9 2.5E+02 0.0055 22.5 6.0 59 13-73 148-209 (275)
242 cd03225 ABC_cobalt_CbiO_domain 25.8 1.4E+02 0.0031 22.4 4.5 60 13-73 144-207 (211)
243 PRK15090 DNA-binding transcrip 25.7 2.6E+02 0.0057 21.9 6.1 52 156-207 28-80 (257)
244 PF06794 UPF0270: Uncharacteri 25.7 1.4E+02 0.003 18.7 3.5 29 5-33 33-61 (70)
245 TIGR01978 sufC FeS assembly AT 25.7 1.6E+02 0.0034 22.7 4.7 59 13-73 154-218 (243)
246 cd03262 ABC_HisP_GlnQ_permease 25.6 1.4E+02 0.003 22.4 4.4 52 13-64 145-200 (213)
247 PF12793 SgrR_N: Sugar transpo 25.5 2E+02 0.0043 19.8 4.7 54 157-210 20-83 (115)
248 PRK14259 phosphate ABC transpo 25.4 2E+02 0.0042 22.8 5.3 58 13-74 164-227 (269)
249 PRK14266 phosphate ABC transpo 25.4 1.6E+02 0.0034 23.0 4.7 53 13-65 156-211 (250)
250 cd03217 ABC_FeS_Assembly ABC-t 25.4 1.4E+02 0.0031 22.3 4.4 54 11-64 112-169 (200)
251 PTZ00112 origin recognition co 25.3 6.6E+02 0.014 24.7 9.4 21 70-90 930-950 (1164)
252 COG1121 ZnuC ABC-type Mn/Zn tr 25.3 2.1E+02 0.0046 22.9 5.3 54 10-65 146-205 (254)
253 cd03226 ABC_cobalt_CbiO_domain 25.2 1.7E+02 0.0037 21.9 4.8 53 13-65 136-192 (205)
254 TIGR02639 ClpA ATP-dependent C 25.1 3.2E+02 0.0069 25.5 7.2 68 20-89 273-358 (731)
255 PRK05818 DNA polymerase III su 25.1 1.5E+02 0.0033 23.8 4.5 40 21-60 88-129 (261)
256 TIGR00968 3a0106s01 sulfate AB 25.0 1.3E+02 0.0028 23.3 4.2 53 13-65 140-197 (237)
257 PRK14275 phosphate ABC transpo 24.9 1.7E+02 0.0037 23.4 5.0 60 13-73 192-254 (286)
258 PTZ00361 26 proteosome regulat 24.7 2E+02 0.0044 25.0 5.5 72 18-89 273-367 (438)
259 cd03224 ABC_TM1139_LivF_branch 24.7 1.8E+02 0.0039 22.0 4.9 60 13-73 142-205 (222)
260 PRK14243 phosphate transporter 24.7 2E+02 0.0043 22.7 5.2 57 13-73 161-223 (264)
261 cd03292 ABC_FtsE_transporter F 24.5 1.9E+02 0.0041 21.8 4.9 60 13-73 146-209 (214)
262 PRK10733 hflB ATP-dependent me 24.4 3.9E+02 0.0085 24.5 7.5 79 13-91 236-337 (644)
263 TIGR00960 3a0501s02 Type II (G 24.2 2E+02 0.0043 21.7 5.0 58 13-73 148-211 (216)
264 PRK10869 recombination and rep 24.2 2.9E+02 0.0062 24.8 6.5 43 22-64 453-498 (553)
265 PRK10771 thiQ thiamine transpo 24.0 1.4E+02 0.0031 22.8 4.2 53 13-65 139-196 (232)
266 TIGR01277 thiQ thiamine ABC tr 23.9 1.6E+02 0.0034 22.3 4.4 52 13-64 138-194 (213)
267 PRK14263 phosphate ABC transpo 23.9 2E+02 0.0043 22.7 5.1 60 13-73 159-221 (261)
268 cd03258 ABC_MetN_methionine_tr 23.9 1.3E+02 0.0029 23.0 4.0 53 13-65 150-207 (233)
269 PRK10908 cell division protein 23.7 1.8E+02 0.004 22.0 4.8 51 13-65 147-203 (222)
270 PRK11534 DNA-binding transcrip 23.6 1.5E+02 0.0033 22.6 4.2 40 157-196 31-70 (224)
271 COG2255 RuvB Holliday junction 23.5 2.5E+02 0.0055 23.2 5.4 140 52-194 155-316 (332)
272 cd03268 ABC_BcrA_bacitracin_re 23.4 1.5E+02 0.0032 22.2 4.2 53 13-65 136-192 (208)
273 cd03259 ABC_Carb_Solutes_like 23.4 1.4E+02 0.0029 22.6 3.9 52 13-64 140-196 (213)
274 PRK09580 sufC cysteine desulfu 23.3 1.7E+02 0.0036 22.7 4.5 51 13-65 155-211 (248)
275 PRK09984 phosphonate/organopho 23.3 1.4E+02 0.0031 23.4 4.1 53 13-65 162-219 (262)
276 cd03230 ABC_DR_subfamily_A Thi 23.2 2.1E+02 0.0045 20.8 4.8 51 13-65 105-161 (173)
277 cd03286 ABC_MSH6_euk MutS6 hom 23.0 1.3E+02 0.0028 23.3 3.7 46 20-66 108-160 (218)
278 PRK14256 phosphate ABC transpo 22.9 1.9E+02 0.0041 22.5 4.8 49 13-64 158-212 (252)
279 cd03246 ABCC_Protease_Secretio 22.7 1.8E+02 0.0038 21.2 4.3 57 13-73 106-168 (173)
280 PRK14238 phosphate transporter 22.7 1.9E+02 0.004 23.0 4.7 53 13-65 177-232 (271)
281 PRK13538 cytochrome c biogenes 22.7 2E+02 0.0044 21.5 4.7 54 13-66 139-196 (204)
282 cd03219 ABC_Mj1267_LivG_branch 22.7 1.8E+02 0.0039 22.3 4.6 60 13-73 153-216 (236)
283 PF07848 PaaX: PaaX-like prote 22.6 1.8E+02 0.0039 18.0 3.7 37 157-193 21-60 (70)
284 cd03298 ABC_ThiQ_thiamine_tran 22.6 1.5E+02 0.0033 22.2 4.1 53 13-65 138-195 (211)
285 TIGR02010 IscR iron-sulfur clu 22.4 1.3E+02 0.0029 21.1 3.4 44 145-188 12-57 (135)
286 TIGR01714 phage_rep_org_N phag 22.4 1.3E+02 0.0029 20.9 3.3 43 157-199 52-94 (119)
287 COG0566 SpoU rRNA methylases [ 22.3 67 0.0014 25.7 2.0 38 20-58 107-144 (260)
288 COG5635 Predicted NTPase (NACH 22.3 60 0.0013 30.6 2.0 43 15-61 299-350 (824)
289 PRK14271 phosphate ABC transpo 22.2 2.1E+02 0.0046 22.7 5.0 50 13-65 173-228 (276)
290 cd03297 ABC_ModC_molybdenum_tr 22.1 1.5E+02 0.0033 22.4 4.0 54 12-65 140-198 (214)
291 TIGR03873 F420-0_ABC_ATP propo 22.1 1.9E+02 0.0041 22.6 4.6 51 13-65 147-203 (256)
292 cd03223 ABCD_peroxisomal_ALDP 22.1 3.1E+02 0.0068 19.8 5.7 60 10-73 98-160 (166)
293 PF00006 ATP-synt_ab: ATP synt 21.9 84 0.0018 24.3 2.5 20 11-32 97-116 (215)
294 TIGR03864 PQQ_ABC_ATP ABC tran 21.9 1.9E+02 0.0041 22.2 4.6 60 13-74 142-206 (236)
295 PRK05917 DNA polymerase III su 21.8 2.1E+02 0.0046 23.3 4.8 57 20-76 94-154 (290)
296 cd03229 ABC_Class3 This class 21.7 1.8E+02 0.004 21.2 4.2 60 13-73 110-174 (178)
297 PRK13649 cbiO cobalt transport 21.7 1.7E+02 0.0038 23.2 4.4 53 13-65 155-211 (280)
298 PRK11264 putative amino-acid A 21.7 1.8E+02 0.004 22.5 4.5 51 13-65 154-210 (250)
299 PRK14255 phosphate ABC transpo 21.6 2E+02 0.0042 22.4 4.6 49 13-64 158-212 (252)
300 PRK06526 transposase; Provisio 21.6 54 0.0012 26.0 1.4 37 22-59 160-201 (254)
301 PRK13652 cbiO cobalt transport 21.5 1.6E+02 0.0035 23.4 4.1 54 11-64 145-203 (277)
302 cd03266 ABC_NatA_sodium_export 21.5 2.2E+02 0.0047 21.5 4.7 51 13-65 146-202 (218)
303 PRK14264 phosphate ABC transpo 21.4 2.5E+02 0.0053 22.8 5.3 53 13-65 210-265 (305)
304 PRK14250 phosphate ABC transpo 21.3 1.7E+02 0.0037 22.6 4.2 53 13-65 141-198 (241)
305 PRK13543 cytochrome c biogenes 21.1 1.8E+02 0.004 22.0 4.3 51 13-65 147-203 (214)
306 PRK06921 hypothetical protein; 21.0 56 0.0012 26.1 1.4 9 22-30 178-186 (266)
307 PRK10419 nikE nickel transport 20.9 1.8E+02 0.004 23.0 4.3 54 12-65 160-218 (268)
308 PRK10247 putative ABC transpor 20.7 1.9E+02 0.0041 22.1 4.3 59 13-73 147-210 (225)
309 TIGR03005 ectoine_ehuA ectoine 20.6 1.7E+02 0.0037 22.8 4.1 52 13-64 156-212 (252)
310 TIGR03345 VI_ClpV1 type VI sec 20.6 1.3E+02 0.0028 28.6 3.8 44 15-58 661-718 (852)
311 cd03260 ABC_PstB_phosphate_tra 20.6 2.4E+02 0.0052 21.4 4.9 52 13-64 151-205 (227)
312 PRK10575 iron-hydroxamate tran 20.6 1.8E+02 0.0039 22.9 4.2 53 12-64 156-213 (265)
313 PRK03573 transcriptional regul 20.6 2.4E+02 0.0052 19.7 4.5 45 146-190 36-80 (144)
314 PRK11300 livG leucine/isoleuci 20.5 1.9E+02 0.0041 22.5 4.3 52 13-65 163-220 (255)
315 cd03221 ABCF_EF-3 ABCF_EF-3 E 20.3 3.2E+02 0.0069 19.2 5.7 51 13-65 80-133 (144)
316 cd07377 WHTH_GntR Winged helix 20.3 1.3E+02 0.0028 17.4 2.7 36 159-194 28-63 (66)
317 PRK11701 phnK phosphonate C-P 20.3 1.8E+02 0.0039 22.8 4.2 53 13-65 161-218 (258)
318 TIGR02147 Fsuc_second hypothet 20.1 2.4E+02 0.0052 22.8 4.8 38 157-194 138-177 (271)
319 cd03282 ABC_MSH4_euk MutS4 hom 20.1 3.2E+02 0.0069 20.8 5.3 46 19-66 106-158 (204)
320 cd03227 ABC_Class2 ABC-type Cl 20.0 1.6E+02 0.0035 21.2 3.6 51 21-73 99-153 (162)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=8.1e-37 Score=274.62 Aligned_cols=202 Identities=24% Similarity=0.300 Sum_probs=177.2
Q ss_pred hHHHHHHHHHHhccCeEEEEecCCCChhhHhhhhcccCCCCCCcEEEEEcCChhHHhh-cCCCceEeCCCCChHHHHHHH
Q 047158 7 IDRGLNMMSSRLLHRRVFVVLDNLDHIDQLKPLAGENKWFGSGSRIIITNRNEHLLKV-FEVDGVCTVPRLCLGKSFQLF 85 (212)
Q Consensus 7 ~~~~~~~l~~~L~~kr~LlvlDdv~~~~~~~~l~~~~~~~~~gs~iivTtR~~~~~~~-~~~~~~~~l~~l~~~~a~~Ll 85 (212)
.++....+.+.|++|||+|||||||+..+|+.+..++|...+||+|++|||++.++.. ++....++++.|+.+|||+||
T Consensus 247 ~~~~~~~i~~~L~~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~L~~~eaW~LF 326 (889)
T KOG4658|consen 247 EDELASKLLNLLEGKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIEVECLTPEEAWDLF 326 (889)
T ss_pred HHHHHHHHHHHhccCceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCccccccccCccccHHHH
Confidence 3678889999999999999999999999999999999988889999999999999998 777788999999999999999
Q ss_pred HHhhcCCC-CCChhHHHHHHHHHHHhCCCCch---------------------hhhccC-----C--chhHHHHHHHhhc
Q 047158 86 SWHAFRKD-KPPQRFMKLSRELLRCAEGLPLE---------------------EKLKRI-----P--NEEILNKLRVSFD 136 (212)
Q Consensus 86 ~~~~~~~~-~~~~~~~~~~~~i~~~c~glPLa---------------------~~l~~~-----~--~~~v~~~l~~s~~ 136 (212)
.+.++... ...+..+.+|++++++|+|+||| +.+... + ...+..++..||+
T Consensus 327 ~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~iLklSyd 406 (889)
T KOG4658|consen 327 QKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEESILPILKLSYD 406 (889)
T ss_pred HHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhhhHHhhhccHh
Confidence 99998763 33345899999999999999999 111111 1 2568899999999
Q ss_pred CCCCchhhhHHhhhhccCCC--CCHHHHHHhhhhcCCcc------------hhhHHHHhhccCceecCC----CcEEecH
Q 047158 137 VLNDDEEKNVFMDIAHLFVG--MDKDYVLKILQGCGFSS------------EIVFFVLTQRCLIVIDED----NRLKMHD 198 (212)
Q Consensus 137 ~L~~~~~~~~~~~la~f~~~--~~~~~l~~~~~~~~~~~------------~~~l~~L~~~sll~~~~~----~~~~mH~ 198 (212)
.| +++.|.||+|||.||++ |..+.++.+|+++|++. ..++++|++++|+..... ..|.|||
T Consensus 407 ~L-~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~~~~~~~kmHD 485 (889)
T KOG4658|consen 407 NL-PEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDEGRKETVKMHD 485 (889)
T ss_pred hh-hHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccccceeEEEeeH
Confidence 99 79999999999999997 99999999999999663 347999999999998653 3499999
Q ss_pred HHHHHHHHHHh
Q 047158 199 LIRDMKEKLFA 209 (212)
Q Consensus 199 lv~~~a~~~~~ 209 (212)
+||++|.+++.
T Consensus 486 vvRe~al~ias 496 (889)
T KOG4658|consen 486 VVREMALWIAS 496 (889)
T ss_pred HHHHHHHHHhc
Confidence 99999999987
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=1.1e-33 Score=263.85 Aligned_cols=198 Identities=33% Similarity=0.596 Sum_probs=176.5
Q ss_pred HHHHHHhccCeEEEEecCCCChhhHhhhhcccCCCCCCcEEEEEcCChhHHhhcCCCceEeCCCCChHHHHHHHHHhhcC
Q 047158 12 NMMSSRLLHRRVFVVLDNLDHIDQLKPLAGENKWFGSGSRIIITNRNEHLLKVFEVDGVCTVPRLCLGKSFQLFSWHAFR 91 (212)
Q Consensus 12 ~~l~~~L~~kr~LlvlDdv~~~~~~~~l~~~~~~~~~gs~iivTtR~~~~~~~~~~~~~~~l~~l~~~~a~~Ll~~~~~~ 91 (212)
..+++.|+++|+||||||||+..+|+.+.....+.++||+||||||++.++...+..++|+++.++.++|++||.++||+
T Consensus 287 ~~~~~~L~~krvLLVLDdv~~~~~l~~L~~~~~~~~~GsrIIiTTrd~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~ 366 (1153)
T PLN03210 287 GAMEERLKHRKVLIFIDDLDDQDVLDALAGQTQWFGSGSRIIVITKDKHFLRAHGIDHIYEVCLPSNELALEMFCRSAFK 366 (1153)
T ss_pred HHHHHHHhCCeEEEEEeCCCCHHHHHHHHhhCccCCCCcEEEEEeCcHHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcC
Confidence 46788899999999999999999999998877777899999999999999988777889999999999999999999998
Q ss_pred CCCCChhHHHHHHHHHHHhCCCCch--------------------hhhccCCchhHHHHHHHhhcCCCCc-hhhhHHhhh
Q 047158 92 KDKPPQRFMKLSRELLRCAEGLPLE--------------------EKLKRIPNEEILNKLRVSFDVLNDD-EEKNVFMDI 150 (212)
Q Consensus 92 ~~~~~~~~~~~~~~i~~~c~glPLa--------------------~~l~~~~~~~v~~~l~~s~~~L~~~-~~~~~~~~l 150 (212)
...+.+.+.+++++|+++|+|+||| .+++...+..+..+|++||+.| ++ ..|.||+++
T Consensus 367 ~~~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k~~~~W~~~l~~L~~~~~~~I~~~L~~SYd~L-~~~~~k~~Fl~i 445 (1153)
T PLN03210 367 KNSPPDGFMELASEVALRAGNLPLGLNVLGSYLRGRDKEDWMDMLPRLRNGLDGKIEKTLRVSYDGL-NNKKDKAIFRHI 445 (1153)
T ss_pred CCCCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHhCccHHHHHHHHHhhhcc-Cccchhhhhhee
Confidence 7767777889999999999999999 3344445567999999999999 65 599999999
Q ss_pred hccCCCCCHHHHHHhhhhcCCcchhhHHHHhhccCceecCCCcEEecHHHHHHHHHHHhcC
Q 047158 151 AHLFVGMDKDYVLKILQGCGFSSEIVFFVLTQRCLIVIDEDNRLKMHDLIRDMKEKLFAKN 211 (212)
Q Consensus 151 a~f~~~~~~~~l~~~~~~~~~~~~~~l~~L~~~sll~~~~~~~~~mH~lv~~~a~~~~~~~ 211 (212)
|+|+.+.+.+.+..++..+++.++.+++.|+++||++.. .++|+||+|+|++|+++++++
T Consensus 446 a~ff~~~~~~~v~~~l~~~~~~~~~~l~~L~~ksLi~~~-~~~~~MHdLl~~~~r~i~~~~ 505 (1153)
T PLN03210 446 ACLFNGEKVNDIKLLLANSDLDVNIGLKNLVDKSLIHVR-EDIVEMHSLLQEMGKEIVRAQ 505 (1153)
T ss_pred hhhcCCCCHHHHHHHHHhcCCCchhChHHHHhcCCEEEc-CCeEEhhhHHHHHHHHHHHhh
Confidence 999999888888887877888888899999999999986 578999999999999998765
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=99.96 E-value=2.5e-29 Score=202.78 Aligned_cols=170 Identities=25% Similarity=0.433 Sum_probs=130.8
Q ss_pred ccchHHHHHHHHHHhccCeEEEEecCCCChhhHhhhhcccCCCCCCcEEEEEcCChhHHhhcCC-CceEeCCCCChHHHH
Q 047158 4 MESIDRGLNMMSSRLLHRRVFVVLDNLDHIDQLKPLAGENKWFGSGSRIIITNRNEHLLKVFEV-DGVCTVPRLCLGKSF 82 (212)
Q Consensus 4 ~~~~~~~~~~l~~~L~~kr~LlvlDdv~~~~~~~~l~~~~~~~~~gs~iivTtR~~~~~~~~~~-~~~~~l~~l~~~~a~ 82 (212)
..+.++..+.+++.|+++++||||||||+...|+.+...++....||+||+|||+..++...+. ...+++++|+.++|+
T Consensus 84 ~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~L~~~ea~ 163 (287)
T PF00931_consen 84 PKDIEELQDQLRELLKDKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEPLSEEEAL 163 (287)
T ss_dssp CSSHHHHHHHHHHHHCCTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS--HHHHH
T ss_pred ccccccccccchhhhccccceeeeeeeccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 3567889999999999999999999999999998888777766779999999999988776654 578999999999999
Q ss_pred HHHHHhhcCCC-CCChhHHHHHHHHHHHhCCCCch---------------------hhhc----cC--CchhHHHHHHHh
Q 047158 83 QLFSWHAFRKD-KPPQRFMKLSRELLRCAEGLPLE---------------------EKLK----RI--PNEEILNKLRVS 134 (212)
Q Consensus 83 ~Ll~~~~~~~~-~~~~~~~~~~~~i~~~c~glPLa---------------------~~l~----~~--~~~~v~~~l~~s 134 (212)
+||.+.++... ...+.....+++|++.|+|+||| ..+. .. ...++..++.+|
T Consensus 164 ~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~l~~s 243 (287)
T PF00931_consen 164 ELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRSVFSALELS 243 (287)
T ss_dssp HHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceec
Confidence 99999987655 22334456789999999999999 1111 11 236699999999
Q ss_pred hcCCCCchhhhHHhhhhccCCC--CCHHHHHHhhhhcCCcch
Q 047158 135 FDVLNDDEEKNVFMDIAHLFVG--MDKDYVLKILQGCGFSSE 174 (212)
Q Consensus 135 ~~~L~~~~~~~~~~~la~f~~~--~~~~~l~~~~~~~~~~~~ 174 (212)
|+.| +++.|+||++||+||.+ ++.+.++.+|.++|++..
T Consensus 244 ~~~L-~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~ 284 (287)
T PF00931_consen 244 YDSL-PDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISS 284 (287)
T ss_dssp HHSS-HTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC-
T ss_pred hhcC-CccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCcc
Confidence 9999 99999999999999986 889999999999987654
No 4
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.09 E-value=6.5e-09 Score=96.19 Aligned_cols=189 Identities=13% Similarity=0.159 Sum_probs=121.3
Q ss_pred HHHHHHHhc--cCeEEEEecCCCChh--hHh-hhhcccCCCCCCcEEEEEcCChhHHh--h-cCCCceEeCC----CCCh
Q 047158 11 LNMMSSRLL--HRRVFVVLDNLDHID--QLK-PLAGENKWFGSGSRIIITNRNEHLLK--V-FEVDGVCTVP----RLCL 78 (212)
Q Consensus 11 ~~~l~~~L~--~kr~LlvlDdv~~~~--~~~-~l~~~~~~~~~gs~iivTtR~~~~~~--~-~~~~~~~~l~----~l~~ 78 (212)
...+...+. +++++||+||+...+ .+. .+..-+....++.++|+|||...... . ........++ +|+.
T Consensus 109 ~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~ 188 (903)
T PRK04841 109 FAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLPPLGIANLRVRDQLLEIGSQQLAFDH 188 (903)
T ss_pred HHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCCCCchHhHHhcCcceecCHHhCCCCH
Confidence 333434443 579999999997532 112 22222222335678889999742211 1 1123345566 8999
Q ss_pred HHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCCCch-----hhhccC--------------CchhHHHHHHH-hhcCC
Q 047158 79 GKSFQLFSWHAFRKDKPPQRFMKLSRELLRCAEGLPLE-----EKLKRI--------------PNEEILNKLRV-SFDVL 138 (212)
Q Consensus 79 ~~a~~Ll~~~~~~~~~~~~~~~~~~~~i~~~c~glPLa-----~~l~~~--------------~~~~v~~~l~~-s~~~L 138 (212)
+|+.++|....+.. .+ ...+.+|.+.|+|.|++ ..+... +...+...+.- -++.|
T Consensus 189 ~e~~~ll~~~~~~~--~~---~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~~l 263 (903)
T PRK04841 189 QEAQQFFDQRLSSP--IE---AAESSRLCDDVEGWATALQLIALSARQNNSSLHDSARRLAGINASHLSDYLVEEVLDNV 263 (903)
T ss_pred HHHHHHHHhccCCC--CC---HHHHHHHHHHhCChHHHHHHHHHHHhhCCCchhhhhHhhcCCCchhHHHHHHHHHHhcC
Confidence 99999998655322 11 34467899999999999 111111 12235544433 37899
Q ss_pred CCchhhhHHhhhhccCCCCCHHHHHHhhhhcCCcchhhHHHHhhccCceec-C-C-CcEEecHHHHHHHHHHH
Q 047158 139 NDDEEKNVFMDIAHLFVGMDKDYVLKILQGCGFSSEIVFFVLTQRCLIVID-E-D-NRLKMHDLIRDMKEKLF 208 (212)
Q Consensus 139 ~~~~~~~~~~~la~f~~~~~~~~l~~~~~~~~~~~~~~l~~L~~~sll~~~-~-~-~~~~mH~lv~~~a~~~~ 208 (212)
|+..++++..+|+++ .++.+.+..+.... .....++.|.+.+++... + + ..|++|++++++.+...
T Consensus 264 -~~~~~~~l~~~a~~~-~~~~~l~~~l~~~~--~~~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 264 -DLETRHFLLRCSVLR-SMNDALIVRVTGEE--NGQMRLEELERQGLFIQRMDDSGEWFRYHPLFASFLRHRC 332 (903)
T ss_pred -CHHHHHHHHHhcccc-cCCHHHHHHHcCCC--cHHHHHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHH
Confidence 999999999999986 67777666665432 246679999999997542 2 2 25999999999998865
No 5
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.15 E-value=6.5e-07 Score=74.07 Aligned_cols=195 Identities=20% Similarity=0.273 Sum_probs=132.6
Q ss_pred HHHHHHHHHhccCeEEEEecCCCChh-hHhhhhcccCCCCCCcEEEEEcCChhHHhhcCCCceEeCCCCChH-HHHHHHH
Q 047158 9 RGLNMMSSRLLHRRVFVVLDNLDHID-QLKPLAGENKWFGSGSRIIITNRNEHLLKVFEVDGVCTVPRLCLG-KSFQLFS 86 (212)
Q Consensus 9 ~~~~~l~~~L~~kr~LlvlDdv~~~~-~~~~l~~~~~~~~~gs~iivTtR~~~~~~~~~~~~~~~l~~l~~~-~a~~Ll~ 86 (212)
.....+..+..++|.++|+||+.+.- +-..+...+..+++.-.|+.|+|+..... .+..+.+++++.. ++.++|.
T Consensus 76 ~~~~~~~~~~~~rr~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l~~---ge~~~~~~~L~~~d~a~~lf~ 152 (414)
T COG3903 76 SAVDTLVRRIGDRRALLVLDNCEHLLDACAALIVALLGACPRLAILATSREAILVA---GEVHRRVPSLSLFDEAIELFV 152 (414)
T ss_pred HHHHHHHHHHhhhhHHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhccc---ccccccCCccccCCchhHHHH
Confidence 45567888899999999999998753 33333333333455567899998654422 3566888888865 7889987
Q ss_pred HhhcCCCC---CChhHHHHHHHHHHHhCCCCch---------------------hhhc---------cCCchhHHHHHHH
Q 047158 87 WHAFRKDK---PPQRFMKLSRELLRCAEGLPLE---------------------EKLK---------RIPNEEILNKLRV 133 (212)
Q Consensus 87 ~~~~~~~~---~~~~~~~~~~~i~~~c~glPLa---------------------~~l~---------~~~~~~v~~~l~~ 133 (212)
..+..... ..........+|+++..|+||+ +.+. ..........+.+
T Consensus 153 ~ra~~~~~~f~l~~~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~w 232 (414)
T COG3903 153 CRAVLVALSFWLTDDNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDW 232 (414)
T ss_pred HHHHHhccceeecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcccccchhHHHhccchhhh
Confidence 66532221 2234556788999999999999 1111 1122447788999
Q ss_pred hhcCCCCchhhhHHhhhhccCCCCCHHHHHHhhhhcC-------CcchhhHHHHhhccCceecC---CCcEEecHHHHHH
Q 047158 134 SFDVLNDDEEKNVFMDIAHLFVGMDKDYVLKILQGCG-------FSSEIVFFVLTQRCLIVIDE---DNRLKMHDLIRDM 203 (212)
Q Consensus 134 s~~~L~~~~~~~~~~~la~f~~~~~~~~l~~~~~~~~-------~~~~~~l~~L~~~sll~~~~---~~~~~mH~lv~~~ 203 (212)
||.-| +.-.+..|..++.|..+|+.... .|.+.+ +..-..+-.|+++|++.... .-+|+.-+-++.|
T Consensus 233 s~~lL-tgwe~~~~~rLa~~~g~f~~~l~--~~~a~g~~~~~~~y~~~~a~~ll~~kslv~a~~~~~~a~~Rl~eT~r~Y 309 (414)
T COG3903 233 SYALL-TGWERALFGRLAVFVGGFDLGLA--LAVAAGADVDVPRYLVLLALTLLVDKSLVVALDLLGRARYRLLETGRRY 309 (414)
T ss_pred hhHhh-hhHHHHHhcchhhhhhhhcccHH--HHHhcCCccccchHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHH
Confidence 99999 99999999999999988877732 222222 22233577889999988654 2237777777777
Q ss_pred HHHHHh
Q 047158 204 KEKLFA 209 (212)
Q Consensus 204 a~~~~~ 209 (212)
+.++..
T Consensus 310 alaeL~ 315 (414)
T COG3903 310 ALAELH 315 (414)
T ss_pred HHHHHH
Confidence 776543
No 6
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.09 E-value=2.6e-05 Score=63.50 Aligned_cols=143 Identities=15% Similarity=0.076 Sum_probs=94.4
Q ss_pred CcEEEEEcCChhHHhhcC--CCceEeCCCCChHHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCCCch-----hh---
Q 047158 49 GSRIIITNRNEHLLKVFE--VDGVCTVPRLCLGKSFQLFSWHAFRKDKPPQRFMKLSRELLRCAEGLPLE-----EK--- 118 (212)
Q Consensus 49 gs~iivTtR~~~~~~~~~--~~~~~~l~~l~~~~a~~Ll~~~~~~~~~~~~~~~~~~~~i~~~c~glPLa-----~~--- 118 (212)
.+-|..||+...+...+- ....+.+++++.++..+++.+.+...... -..+....|++.|+|.|-. ..
T Consensus 130 ~~li~~t~~~~~l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~~~~~--~~~~al~~ia~~~~G~pR~~~~ll~~~~~ 207 (305)
T TIGR00635 130 FTLVGATTRAGMLTSPLRDRFGIILRLEFYTVEELAEIVSRSAGLLNVE--IEPEAALEIARRSRGTPRIANRLLRRVRD 207 (305)
T ss_pred eEEEEecCCccccCHHHHhhcceEEEeCCCCHHHHHHHHHHHHHHhCCC--cCHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence 455566676544333211 23467899999999999999877432221 2245677899999999965 11
Q ss_pred h---cc---CCchh---HHHHHHHhhcCCCCchhhhHHh-hhhccCCC-CCHHHHHHhhhhcCCcchhhHH-HHhhccCc
Q 047158 119 L---KR---IPNEE---ILNKLRVSFDVLNDDEEKNVFM-DIAHLFVG-MDKDYVLKILQGCGFSSEIVFF-VLTQRCLI 186 (212)
Q Consensus 119 l---~~---~~~~~---v~~~l~~s~~~L~~~~~~~~~~-~la~f~~~-~~~~~l~~~~~~~~~~~~~~l~-~L~~~sll 186 (212)
. .. ...+. ....+..++..+ ++..+..+. .++.+..+ ++.+.+...+.......+..++ .|++++||
T Consensus 208 ~a~~~~~~~it~~~v~~~l~~l~~~~~~l-~~~~~~~L~al~~~~~~~~~~~~~ia~~lg~~~~~~~~~~e~~Li~~~li 286 (305)
T TIGR00635 208 FAQVRGQKIINRDIALKALEMLMIDELGL-DEIDRKLLSVLIEQFQGGPVGLKTLAAALGEDADTIEDVYEPYLLQIGFL 286 (305)
T ss_pred HHHHcCCCCcCHHHHHHHHHHhCCCCCCC-CHHHHHHHHHHHHHhCCCcccHHHHHHHhCCCcchHHHhhhHHHHHcCCc
Confidence 1 11 11112 223355677888 888777776 44666553 8888888888887777777788 69999999
Q ss_pred eecCCCcE
Q 047158 187 VIDEDNRL 194 (212)
Q Consensus 187 ~~~~~~~~ 194 (212)
.....|++
T Consensus 287 ~~~~~g~~ 294 (305)
T TIGR00635 287 QRTPRGRI 294 (305)
T ss_pred ccCCchhh
Confidence 86666653
No 7
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.02 E-value=5e-05 Score=62.66 Aligned_cols=142 Identities=19% Similarity=0.061 Sum_probs=96.5
Q ss_pred CcEEEEEcCChhHHhhcC--CCceEeCCCCChHHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCCCch-----hh---
Q 047158 49 GSRIIITNRNEHLLKVFE--VDGVCTVPRLCLGKSFQLFSWHAFRKDKPPQRFMKLSRELLRCAEGLPLE-----EK--- 118 (212)
Q Consensus 49 gs~iivTtR~~~~~~~~~--~~~~~~l~~l~~~~a~~Ll~~~~~~~~~~~~~~~~~~~~i~~~c~glPLa-----~~--- 118 (212)
.+-|..||+...+...+. ....+.+++++.++..+++.+.+...... -..+.+..|++.|+|.|-. .+
T Consensus 151 ~~li~at~~~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~~--~~~~~~~~ia~~~~G~pR~a~~~l~~~~~ 228 (328)
T PRK00080 151 FTLIGATTRAGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILGVE--IDEEGALEIARRSRGTPRIANRLLRRVRD 228 (328)
T ss_pred ceEEeecCCcccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCC--cCHHHHHHHHHHcCCCchHHHHHHHHHHH
Confidence 345566666543333211 23468999999999999999877543222 2245678999999999965 11
Q ss_pred hc------cCCchh---HHHHHHHhhcCCCCchhhhHHh-hhhccCCC-CCHHHHHHhhhhcCCcchhhHH-HHhhccCc
Q 047158 119 LK------RIPNEE---ILNKLRVSFDVLNDDEEKNVFM-DIAHLFVG-MDKDYVLKILQGCGFSSEIVFF-VLTQRCLI 186 (212)
Q Consensus 119 l~------~~~~~~---v~~~l~~s~~~L~~~~~~~~~~-~la~f~~~-~~~~~l~~~~~~~~~~~~~~l~-~L~~~sll 186 (212)
+. ...... ....+...+..| ++..+..+. .+..|..+ +..+.+...+.......+..++ .|++.+|+
T Consensus 229 ~a~~~~~~~I~~~~v~~~l~~~~~~~~~l-~~~~~~~l~~~~~~~~~~~~~~~~~a~~lg~~~~~~~~~~e~~Li~~~li 307 (328)
T PRK00080 229 FAQVKGDGVITKEIADKALDMLGVDELGL-DEMDRKYLRTIIEKFGGGPVGLDTLAAALGEERDTIEDVYEPYLIQQGFI 307 (328)
T ss_pred HHHHcCCCCCCHHHHHHHHHHhCCCcCCC-CHHHHHHHHHHHHHcCCCceeHHHHHHHHCCCcchHHHHhhHHHHHcCCc
Confidence 11 111122 334455667788 888888885 66677664 8999998888887777777888 99999999
Q ss_pred eecCCCc
Q 047158 187 VIDEDNR 193 (212)
Q Consensus 187 ~~~~~~~ 193 (212)
+....|+
T Consensus 308 ~~~~~gr 314 (328)
T PRK00080 308 QRTPRGR 314 (328)
T ss_pred ccCCchH
Confidence 8766665
No 8
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.57 E-value=0.0013 Score=59.39 Aligned_cols=192 Identities=15% Similarity=0.186 Sum_probs=112.9
Q ss_pred hHHHHHHHHHHhcc--CeEEEEecCCCCh---h---hHhhhhcccCCCCCCcEEEEEcCChhHHhhcC---CCceEeCC-
Q 047158 7 IDRGLNMMSSRLLH--RRVFVVLDNLDHI---D---QLKPLAGENKWFGSGSRIIITNRNEHLLKVFE---VDGVCTVP- 74 (212)
Q Consensus 7 ~~~~~~~l~~~L~~--kr~LlvlDdv~~~---~---~~~~l~~~~~~~~~gs~iivTtR~~~~~~~~~---~~~~~~l~- 74 (212)
...+...+..-|.. ++..+||||..-. . .++-+.. ...++-.+++|||+..-..... .....+++
T Consensus 113 l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~---~~P~~l~lvv~SR~rP~l~la~lRlr~~llEi~~ 189 (894)
T COG2909 113 LESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLK---HAPENLTLVVTSRSRPQLGLARLRLRDELLEIGS 189 (894)
T ss_pred HHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHH---hCCCCeEEEEEeccCCCCcccceeehhhHHhcCh
Confidence 34444555554443 5889999998632 2 2344443 3346788999999865332211 12223333
Q ss_pred ---CCChHHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCCCch---hhhcc---CCchh-----------HH-HHHHH
Q 047158 75 ---RLCLGKSFQLFSWHAFRKDKPPQRFMKLSRELLRCAEGLPLE---EKLKR---IPNEE-----------IL-NKLRV 133 (212)
Q Consensus 75 ---~l~~~~a~~Ll~~~~~~~~~~~~~~~~~~~~i~~~c~glPLa---~~l~~---~~~~~-----------v~-~~l~~ 133 (212)
.++.+|+.++|....... -....++.+.+..+|.+-| ..+.. .+... +. -...-
T Consensus 190 ~~Lrf~~eE~~~fl~~~~~l~-----Ld~~~~~~L~~~teGW~~al~L~aLa~~~~~~~~q~~~~LsG~~~~l~dYL~ee 264 (894)
T COG2909 190 EELRFDTEEAAAFLNDRGSLP-----LDAADLKALYDRTEGWAAALQLIALALRNNTSAEQSLRGLSGAASHLSDYLVEE 264 (894)
T ss_pred HhhcCChHHHHHHHHHcCCCC-----CChHHHHHHHhhcccHHHHHHHHHHHccCCCcHHHHhhhccchHHHHHHHHHHH
Confidence 378999999998665221 1123467788888887766 11111 11111 11 11234
Q ss_pred hhcCCCCchhhhHHhhhhccCCCCCHHHHHHhhhhcCCcchhhHHHHhhccCcee--cC-CCcEEecHHHHHHHHHHHhc
Q 047158 134 SFDVLNDDEEKNVFMDIAHLFVGMDKDYVLKILQGCGFSSEIVFFVLTQRCLIVI--DE-DNRLKMHDLIRDMKEKLFAK 210 (212)
Q Consensus 134 s~~~L~~~~~~~~~~~la~f~~~~~~~~l~~~~~~~~~~~~~~l~~L~~~sll~~--~~-~~~~~mH~lv~~~a~~~~~~ 210 (212)
-++.| |++.|..++-+|+++. +..+-..++-+.. .....+++|.+++|+-. ++ ++-|+.|.|..+|.+.-...
T Consensus 265 Vld~L-p~~l~~FLl~~svl~~-f~~eL~~~Ltg~~--ng~amLe~L~~~gLFl~~Ldd~~~WfryH~LFaeFL~~r~~~ 340 (894)
T COG2909 265 VLDRL-PPELRDFLLQTSVLSR-FNDELCNALTGEE--NGQAMLEELERRGLFLQRLDDEGQWFRYHHLFAEFLRQRLQR 340 (894)
T ss_pred HHhcC-CHHHHHHHHHHHhHHH-hhHHHHHHHhcCC--cHHHHHHHHHhCCCceeeecCCCceeehhHHHHHHHHhhhcc
Confidence 57899 9999999999999853 2222222222221 13345999999999874 22 34499999999999875443
No 9
>PF05729 NACHT: NACHT domain
Probab=97.31 E-value=0.00067 Score=49.61 Aligned_cols=71 Identities=20% Similarity=0.292 Sum_probs=49.0
Q ss_pred ccCeEEEEecCCCChhh---------Hhhhhcc-cCC-CCCCcEEEEEcCChhH---HhhcCCCceEeCCCCChHHHHHH
Q 047158 19 LHRRVFVVLDNLDHIDQ---------LKPLAGE-NKW-FGSGSRIIITNRNEHL---LKVFEVDGVCTVPRLCLGKSFQL 84 (212)
Q Consensus 19 ~~kr~LlvlDdv~~~~~---------~~~l~~~-~~~-~~~gs~iivTtR~~~~---~~~~~~~~~~~l~~l~~~~a~~L 84 (212)
..+++++|+|++++... +..+... +.. ..+++++++|||.... .........+.+++|++++..++
T Consensus 79 ~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 158 (166)
T PF05729_consen 79 KNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEEDIKQY 158 (166)
T ss_pred cCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHHHHHH
Confidence 46799999999986432 2222221 221 2468999999998766 33333456799999999999999
Q ss_pred HHHhh
Q 047158 85 FSWHA 89 (212)
Q Consensus 85 l~~~~ 89 (212)
+.+..
T Consensus 159 ~~~~f 163 (166)
T PF05729_consen 159 LRKYF 163 (166)
T ss_pred HHHHh
Confidence 87653
No 10
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=97.09 E-value=0.0027 Score=48.97 Aligned_cols=105 Identities=15% Similarity=0.113 Sum_probs=53.3
Q ss_pred HHHHHHHHHhcc--CeEEEEecCCCChh-----------hHhhhhcccCCCCCCcEEEEEcCChhHHhh--------cCC
Q 047158 9 RGLNMMSSRLLH--RRVFVVLDNLDHID-----------QLKPLAGENKWFGSGSRIIITNRNEHLLKV--------FEV 67 (212)
Q Consensus 9 ~~~~~l~~~L~~--kr~LlvlDdv~~~~-----------~~~~l~~~~~~~~~gs~iivTtR~~~~~~~--------~~~ 67 (212)
.....+.+.+.. ++++||+|++.... .+..+........+.+.|+++|. ...... .+.
T Consensus 104 ~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~S~-~~~~~~~~~~~~~~~~~ 182 (234)
T PF01637_consen 104 SALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNVSIVITGSS-DSLMEEFLDDKSPLFGR 182 (234)
T ss_dssp --HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTEEEEEEESS-HHHHHHTT-TTSTTTT-
T ss_pred HHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCceEEEECCc-hHHHHHhhcccCccccc
Confidence 334444444543 46999999997655 12223333222334444444444 444333 122
Q ss_pred CceEeCCCCChHHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCCCc
Q 047158 68 DGVCTVPRLCLGKSFQLFSWHAFRKDKPPQRFMKLSRELLRCAEGLPL 115 (212)
Q Consensus 68 ~~~~~l~~l~~~~a~~Ll~~~~~~~~~~~~~~~~~~~~i~~~c~glPL 115 (212)
...+.+++++.+++++++....-..... +.......+|...+||.|.
T Consensus 183 ~~~~~l~~l~~~e~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~gG~P~ 229 (234)
T PF01637_consen 183 FSHIELKPLSKEEAREFLKELFKELIKL-PFSDEDIEEIYSLTGGNPR 229 (234)
T ss_dssp --EEEE----HHHHHHHHHHHHHCC-------HHHHHHHHHHHTT-HH
T ss_pred cceEEEeeCCHHHHHHHHHHHHHHhhcc-cCCHHHHHHHHHHhCCCHH
Confidence 3459999999999999999865332111 1234557899999999995
No 11
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=96.26 E-value=0.13 Score=43.47 Aligned_cols=182 Identities=14% Similarity=0.134 Sum_probs=94.8
Q ss_pred hHHHHHHHHHHhc--cCeEEEEecCCCChh------hHhhhhcccCCC-CCCcEEEEEcCChhHHhhcC-------CCce
Q 047158 7 IDRGLNMMSSRLL--HRRVFVVLDNLDHID------QLKPLAGENKWF-GSGSRIIITNRNEHLLKVFE-------VDGV 70 (212)
Q Consensus 7 ~~~~~~~l~~~L~--~kr~LlvlDdv~~~~------~~~~l~~~~~~~-~~gs~iivTtR~~~~~~~~~-------~~~~ 70 (212)
.++..+.+.+.+. ++..+||+|+++... .+..+....... +.+-.+|.++.......... ....
T Consensus 122 ~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~~~~v~vI~i~~~~~~~~~l~~~~~s~~~~~~ 201 (394)
T PRK00411 122 FDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEYPGARIGVIGISSDLTFLYILDPRVKSVFRPEE 201 (394)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhccCCCeEEEEEEECCcchhhhcCHHHHhcCCcce
Confidence 4556667777775 346899999998643 344443322211 11223566665544333221 1346
Q ss_pred EeCCCCChHHHHHHHHHhhcC---CCCCCh-hHHHHHHHHHHHhCCCCch-------hhhc------cCCchhHHHH---
Q 047158 71 CTVPRLCLGKSFQLFSWHAFR---KDKPPQ-RFMKLSRELLRCAEGLPLE-------EKLK------RIPNEEILNK--- 130 (212)
Q Consensus 71 ~~l~~l~~~~a~~Ll~~~~~~---~~~~~~-~~~~~~~~i~~~c~glPLa-------~~l~------~~~~~~v~~~--- 130 (212)
+.+++.+.++..+++...+.. .....+ ..+.++.......|..+.| .... ......+..+
T Consensus 202 i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~~~~~I~~~~v~~a~~~ 281 (394)
T PRK00411 202 IYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAEREGSRKVTEEDVRKAYEK 281 (394)
T ss_pred eecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHH
Confidence 789999999999999876532 112222 2222222222224555555 0011 1112233322
Q ss_pred -----HHHhhcCCCCchhhhHHhhhhccC----CCCCHHHHHHhh----hhcCCc------chhhHHHHhhccCceec
Q 047158 131 -----LRVSFDVLNDDEEKNVFMDIAHLF----VGMDKDYVLKIL----QGCGFS------SEIVFFVLTQRCLIVID 189 (212)
Q Consensus 131 -----l~~s~~~L~~~~~~~~~~~la~f~----~~~~~~~l~~~~----~~~~~~------~~~~l~~L~~~sll~~~ 189 (212)
+.-.+..| |.+.+..+..++... ..+....+.... ...+.. ...+++.|.+.|+|+..
T Consensus 282 ~~~~~~~~~~~~L-~~~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~~~~~~~~~~~~~~~l~~L~~~glI~~~ 358 (394)
T PRK00411 282 SEIVHLSEVLRTL-PLHEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEELGYEPRTHTRFYEYINKLDMLGIINTR 358 (394)
T ss_pred HHHHHHHHHHhcC-CHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHHHhcCCeEEE
Confidence 23457788 877777766655432 234444443221 112222 13379999999999854
No 12
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=96.21 E-value=0.086 Score=41.92 Aligned_cols=97 Identities=14% Similarity=0.168 Sum_probs=57.8
Q ss_pred ccCeEEEEecCCCChh--hHhhhhc---ccCCCCCCcEEEEEcCChhHHhhcC----------CCceEeCCCCChHHHHH
Q 047158 19 LHRRVFVVLDNLDHID--QLKPLAG---ENKWFGSGSRIIITNRNEHLLKVFE----------VDGVCTVPRLCLGKSFQ 83 (212)
Q Consensus 19 ~~kr~LlvlDdv~~~~--~~~~l~~---~~~~~~~gs~iivTtR~~~~~~~~~----------~~~~~~l~~l~~~~a~~ 83 (212)
.+++.++|+|+++... .++.+.. ..........|++|.... ....+. ....+.+++++.+|..+
T Consensus 121 ~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e~~~ 199 (269)
T TIGR03015 121 AGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPLDREETRE 199 (269)
T ss_pred CCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCCCHHHHHH
Confidence 5678999999998643 3444332 111112233456665432 211111 13357899999999999
Q ss_pred HHHHhhcCCCC--CChhHHHHHHHHHHHhCCCCch
Q 047158 84 LFSWHAFRKDK--PPQRFMKLSRELLRCAEGLPLE 116 (212)
Q Consensus 84 Ll~~~~~~~~~--~~~~~~~~~~~i~~~c~glPLa 116 (212)
++......... ...-..+....|.+.++|.|..
T Consensus 200 ~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~ 234 (269)
T TIGR03015 200 YIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRL 234 (269)
T ss_pred HHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccH
Confidence 88866532211 1112346788999999999975
No 13
>PRK06893 DNA replication initiation factor; Validated
Probab=96.19 E-value=0.014 Score=45.59 Aligned_cols=71 Identities=11% Similarity=0.230 Sum_probs=44.5
Q ss_pred eEEEEecCCCCh---hhHh-hhhcccCC-CCCCcEEEE-EcCC---------hhHHhhcCCCceEeCCCCChHHHHHHHH
Q 047158 22 RVFVVLDNLDHI---DQLK-PLAGENKW-FGSGSRIII-TNRN---------EHLLKVFEVDGVCTVPRLCLGKSFQLFS 86 (212)
Q Consensus 22 r~LlvlDdv~~~---~~~~-~l~~~~~~-~~~gs~iiv-TtR~---------~~~~~~~~~~~~~~l~~l~~~~a~~Ll~ 86 (212)
.-+|++||++.. ..|+ .+...+.. ...|+.+|+ |+.. +.+...+....++++++++.++.++++.
T Consensus 92 ~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~ 171 (229)
T PRK06893 92 QDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQ 171 (229)
T ss_pred CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHH
Confidence 358999999863 3343 22222221 123555544 5543 3555555556789999999999999999
Q ss_pred HhhcCC
Q 047158 87 WHAFRK 92 (212)
Q Consensus 87 ~~~~~~ 92 (212)
+.+...
T Consensus 172 ~~a~~~ 177 (229)
T PRK06893 172 RNAYQR 177 (229)
T ss_pred HHHHHc
Confidence 888543
No 14
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=95.78 E-value=0.086 Score=39.69 Aligned_cols=88 Identities=17% Similarity=0.152 Sum_probs=59.5
Q ss_pred cCeEEEEecCCCCh--hhHhhhhcccCCCCCCcEEEEEcCCh-hHHhhc-CCCceEeCCCCChHHHHHHHHHhhcCCCCC
Q 047158 20 HRRVFVVLDNLDHI--DQLKPLAGENKWFGSGSRIIITNRNE-HLLKVF-EVDGVCTVPRLCLGKSFQLFSWHAFRKDKP 95 (212)
Q Consensus 20 ~kr~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~iivTtR~~-~~~~~~-~~~~~~~l~~l~~~~a~~Ll~~~~~~~~~~ 95 (212)
+.+-++|+|+++.. +..+.++..+....+.+.+|++|++. .+...+ .....+++.+++.++..+.+... + .
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~~~~~~~l~~~--g---i 169 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEALLQWLIRQ--G---I 169 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCCHHHHHHHHHHc--C---C
Confidence 45668999999754 34666666665555566677777654 222221 12457999999999998888776 1 1
Q ss_pred ChhHHHHHHHHHHHhCCCCc
Q 047158 96 PQRFMKLSRELLRCAEGLPL 115 (212)
Q Consensus 96 ~~~~~~~~~~i~~~c~glPL 115 (212)
. ...+..+++.++|.|.
T Consensus 170 ~---~~~~~~i~~~~~g~~r 186 (188)
T TIGR00678 170 S---EEAAELLLALAGGSPG 186 (188)
T ss_pred C---HHHHHHHHHHcCCCcc
Confidence 1 3557889999999884
No 15
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=95.72 E-value=0.059 Score=45.23 Aligned_cols=91 Identities=13% Similarity=0.022 Sum_probs=60.5
Q ss_pred cCeEEEEecCCCCh--hhHhhhhcccCCCCCCcEEEEEcCChhHH-hhc-CCCceEeCCCCChHHHHHHHHHhhcCCCCC
Q 047158 20 HRRVFVVLDNLDHI--DQLKPLAGENKWFGSGSRIIITNRNEHLL-KVF-EVDGVCTVPRLCLGKSFQLFSWHAFRKDKP 95 (212)
Q Consensus 20 ~kr~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~iivTtR~~~~~-~~~-~~~~~~~l~~l~~~~a~~Ll~~~~~~~~~~ 95 (212)
+++-++|+|+++.. .....|+..+.....++.+|++|.+.... ..+ .-...+.+.+++.++..+++...... .
T Consensus 140 ~~~kVviIDead~m~~~aanaLLK~LEepp~~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~---~ 216 (365)
T PRK07471 140 GGWRVVIVDTADEMNANAANALLKVLEEPPARSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPD---L 216 (365)
T ss_pred CCCEEEEEechHhcCHHHHHHHHHHHhcCCCCeEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhccc---C
Confidence 34668999999854 44566665555444567777877766432 221 23457999999999999999875411 1
Q ss_pred ChhHHHHHHHHHHHhCCCCch
Q 047158 96 PQRFMKLSRELLRCAEGLPLE 116 (212)
Q Consensus 96 ~~~~~~~~~~i~~~c~glPLa 116 (212)
. ......+++.++|.|+.
T Consensus 217 ~---~~~~~~l~~~s~Gsp~~ 234 (365)
T PRK07471 217 P---DDPRAALAALAEGSVGR 234 (365)
T ss_pred C---HHHHHHHHHHcCCCHHH
Confidence 1 11225788999999986
No 16
>COG3899 Predicted ATPase [General function prediction only]
Probab=95.44 E-value=0.41 Score=44.73 Aligned_cols=191 Identities=15% Similarity=0.110 Sum_probs=112.5
Q ss_pred HHHHHhcc-CeEEEEecCCCC--hh---hHhhhhcccCCCC-CCcEEEE--EcCCh--hHHhhcCCCceEeCCCCChHHH
Q 047158 13 MMSSRLLH-RRVFVVLDNLDH--ID---QLKPLAGENKWFG-SGSRIII--TNRNE--HLLKVFEVDGVCTVPRLCLGKS 81 (212)
Q Consensus 13 ~l~~~L~~-kr~LlvlDdv~~--~~---~~~~l~~~~~~~~-~gs~iiv--TtR~~--~~~~~~~~~~~~~l~~l~~~~a 81 (212)
.+...... ++..+|+||+.- .. -++.+......+. ....|.. |.+.. ...........+.|.||+..+.
T Consensus 145 ~i~~~~~~~~plVi~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~ 224 (849)
T COG3899 145 FIQVFTAEEHPLVIVLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADT 224 (849)
T ss_pred HHHHHHhccCCeEEEEecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhH
Confidence 33444444 599999999942 21 2333332222000 0112222 23322 1112222346799999999999
Q ss_pred HHHHHHhhcCCCCCChhHHHHHHHHHHHhCCCCch--------------------hhhc----cCCc----hhHHHHHHH
Q 047158 82 FQLFSWHAFRKDKPPQRFMKLSRELLRCAEGLPLE--------------------EKLK----RIPN----EEILNKLRV 133 (212)
Q Consensus 82 ~~Ll~~~~~~~~~~~~~~~~~~~~i~~~c~glPLa--------------------~~l~----~~~~----~~v~~~l~~ 133 (212)
..+........... ..+....|.++..|.|+= ..+. ..+. +++...+..
T Consensus 225 ~~lV~~~l~~~~~~---~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~~~~~~~vv~~l~~ 301 (849)
T COG3899 225 NQLVAATLGCTKLL---PAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLGILATTDAVVEFLAA 301 (849)
T ss_pred HHHHHHHhCCcccc---cchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcCCchhhHHHHHHHHH
Confidence 99988766442222 234578899999999998 0011 1111 224445777
Q ss_pred hhcCCCCchhhhHHhhhhccCCCCCHHHHHHhhhhcCCcchhhHHHHhhccCceecC------CCc--E---EecHHHHH
Q 047158 134 SFDVLNDDEEKNVFMDIAHLFVGMDKDYVLKILQGCGFSSEIVFFVLTQRCLIVIDE------DNR--L---KMHDLIRD 202 (212)
Q Consensus 134 s~~~L~~~~~~~~~~~la~f~~~~~~~~l~~~~~~~~~~~~~~l~~L~~~sll~~~~------~~~--~---~mH~lv~~ 202 (212)
-.+.| |...|+.+...|++...|+.+.|..++.......-..+-.....+++.... .+. . -.|+++|+
T Consensus 302 rl~kL-~~~t~~Vl~~AA~iG~~F~l~~La~l~~~~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~F~H~~vqq 380 (849)
T COG3899 302 RLQKL-PGTTREVLKAAACIGNRFDLDTLAALAEDSPALEAAALLDALQEGLILPLSETYRFGSNVDIATYKFLHDRVQQ 380 (849)
T ss_pred HHhcC-CHHHHHHHHHHHHhCccCCHHHHHHHHhhchHHHHHHHHHHhHhhceeccccccccccccchhhHHhhHHHHHH
Confidence 88999 999999999999998889999998888754433333333333344444321 111 2 46899988
Q ss_pred HHHHH
Q 047158 203 MKEKL 207 (212)
Q Consensus 203 ~a~~~ 207 (212)
.|-..
T Consensus 381 aaY~~ 385 (849)
T COG3899 381 AAYNL 385 (849)
T ss_pred HHhcc
Confidence 88654
No 17
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=95.07 E-value=0.16 Score=41.54 Aligned_cols=90 Identities=11% Similarity=0.115 Sum_probs=60.7
Q ss_pred CeEEEEecCCC--ChhhHhhhhcccCCCCCCcEEEEEcCChhHH-hhc-CCCceEeCCCCChHHHHHHHHHhhcCCCCCC
Q 047158 21 RRVFVVLDNLD--HIDQLKPLAGENKWFGSGSRIIITNRNEHLL-KVF-EVDGVCTVPRLCLGKSFQLFSWHAFRKDKPP 96 (212)
Q Consensus 21 kr~LlvlDdv~--~~~~~~~l~~~~~~~~~gs~iivTtR~~~~~-~~~-~~~~~~~l~~l~~~~a~~Ll~~~~~~~~~~~ 96 (212)
++=++|+|+++ +...++.|+..+.+..+++.+|++|.+.... ..+ .-...+++.+++.++....+.....+ ..
T Consensus 93 ~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~l~~~~~~---~~ 169 (313)
T PRK05564 93 DKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQIYKLNRLSKEEIEKFISYKYND---IK 169 (313)
T ss_pred CceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhceeeeCCCcCHHHHHHHHHHHhcC---CC
Confidence 44456666665 5556888888887777788899888766432 111 12457999999999998887654311 11
Q ss_pred hhHHHHHHHHHHHhCCCCch
Q 047158 97 QRFMKLSRELLRCAEGLPLE 116 (212)
Q Consensus 97 ~~~~~~~~~i~~~c~glPLa 116 (212)
...+..++..++|.|..
T Consensus 170 ---~~~~~~l~~~~~g~~~~ 186 (313)
T PRK05564 170 ---EEEKKSAIAFSDGIPGK 186 (313)
T ss_pred ---HHHHHHHHHHcCCCHHH
Confidence 23366788899998864
No 18
>PF13173 AAA_14: AAA domain
Probab=94.96 E-value=0.054 Score=38.16 Aligned_cols=69 Identities=12% Similarity=0.069 Sum_probs=48.8
Q ss_pred HHHHHHhccCeEEEEecCCCChhhHhhhhcccCCCCCCcEEEEEcCChhHHhhc------CCCceEeCCCCChHH
Q 047158 12 NMMSSRLLHRRVFVVLDNLDHIDQLKPLAGENKWFGSGSRIIITNRNEHLLKVF------EVDGVCTVPRLCLGK 80 (212)
Q Consensus 12 ~~l~~~L~~kr~LlvlDdv~~~~~~~~l~~~~~~~~~gs~iivTtR~~~~~~~~------~~~~~~~l~~l~~~~ 80 (212)
+.+.+....++.++++|++....+|......+.+.++..+|++|+.+......- +-...+++.||+-.|
T Consensus 52 ~~~~~~~~~~~~~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E 126 (128)
T PF13173_consen 52 EYFLELIKPGKKYIFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFRE 126 (128)
T ss_pred HHHHHhhccCCcEEEEehhhhhccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHH
Confidence 444444445788999999998888877776666555678999999877666331 112357888888766
No 19
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=94.86 E-value=0.2 Score=41.85 Aligned_cols=93 Identities=12% Similarity=0.062 Sum_probs=58.6
Q ss_pred cCeEEEEecCCCChh--hHhhhhcccCCCCCCcEEEEEcCChh-HHhhc-CCCceEeCCCCChHHHHHHHHHhhcCCCCC
Q 047158 20 HRRVFVVLDNLDHID--QLKPLAGENKWFGSGSRIIITNRNEH-LLKVF-EVDGVCTVPRLCLGKSFQLFSWHAFRKDKP 95 (212)
Q Consensus 20 ~kr~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~iivTtR~~~-~~~~~-~~~~~~~l~~l~~~~a~~Ll~~~~~~~~~~ 95 (212)
+++-++|+|+++..+ ..+.++..+.....++.+|++|.+.. +...+ .-...+.+.+++.++..+++....... .
T Consensus 140 g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~-~- 217 (351)
T PRK09112 140 GNWRIVIIDPADDMNRNAANAILKTLEEPPARALFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQ-G- 217 (351)
T ss_pred CCceEEEEEchhhcCHHHHHHHHHHHhcCCCCceEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhccc-C-
Confidence 456689999998543 45555555544334555555554432 22222 123579999999999999998743211 1
Q ss_pred ChhHHHHHHHHHHHhCCCCch
Q 047158 96 PQRFMKLSRELLRCAEGLPLE 116 (212)
Q Consensus 96 ~~~~~~~~~~i~~~c~glPLa 116 (212)
-....+..+++.++|.|..
T Consensus 218 --~~~~~~~~i~~~s~G~pr~ 236 (351)
T PRK09112 218 --SDGEITEALLQRSKGSVRK 236 (351)
T ss_pred --CCHHHHHHHHHHcCCCHHH
Confidence 1133467889999999986
No 20
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=94.23 E-value=0.24 Score=45.31 Aligned_cols=93 Identities=10% Similarity=0.024 Sum_probs=61.1
Q ss_pred cCeEEEEecCCCChh--hHhhhhcccCCCCCCcEEEEEcCChhHHh-hc-CCCceEeCCCCChHHHHHHHHHhhcCCCCC
Q 047158 20 HRRVFVVLDNLDHID--QLKPLAGENKWFGSGSRIIITNRNEHLLK-VF-EVDGVCTVPRLCLGKSFQLFSWHAFRKDKP 95 (212)
Q Consensus 20 ~kr~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~iivTtR~~~~~~-~~-~~~~~~~l~~l~~~~a~~Ll~~~~~~~~~~ 95 (212)
++.-++|+|+++... .++.|+..+.......++|+||.+..... .+ .-...+.+..++.++..+.|.+........
T Consensus 118 gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~ 197 (830)
T PRK07003 118 ARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERIA 197 (830)
T ss_pred CCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhccchhhhheEEEecCCcCHHHHHHHHHHHHHHcCCC
Confidence 344578899998643 47777766655556778888887664432 11 123568999999999999998766332211
Q ss_pred ChhHHHHHHHHHHHhCCCC
Q 047158 96 PQRFMKLSRELLRCAEGLP 114 (212)
Q Consensus 96 ~~~~~~~~~~i~~~c~glP 114 (212)
-..+....|++.++|..
T Consensus 198 --id~eAL~lIA~~A~Gsm 214 (830)
T PRK07003 198 --FEPQALRLLARAAQGSM 214 (830)
T ss_pred --CCHHHHHHHHHHcCCCH
Confidence 12345677888887754
No 21
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=94.02 E-value=0.42 Score=41.93 Aligned_cols=94 Identities=12% Similarity=0.098 Sum_probs=60.0
Q ss_pred cCeEEEEecCCCC--hhhHhhhhcccCCCCCCcEEEE-EcCChhHHhhcC-CCceEeCCCCChHHHHHHHHHhhcCCCCC
Q 047158 20 HRRVFVVLDNLDH--IDQLKPLAGENKWFGSGSRIII-TNRNEHLLKVFE-VDGVCTVPRLCLGKSFQLFSWHAFRKDKP 95 (212)
Q Consensus 20 ~kr~LlvlDdv~~--~~~~~~l~~~~~~~~~gs~iiv-TtR~~~~~~~~~-~~~~~~l~~l~~~~a~~Ll~~~~~~~~~~ 95 (212)
+++-++|+|+++. ...++.|...+....+.+.+|+ ||+...+...+. -...+++.+++.++..+.+...+-.....
T Consensus 127 ~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi~ 206 (507)
T PRK06645 127 GKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQENLK 206 (507)
T ss_pred CCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHhhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 4667899999986 3457777766665555666554 444444433332 24568999999999999998776432211
Q ss_pred ChhHHHHHHHHHHHhCCCCc
Q 047158 96 PQRFMKLSRELLRCAEGLPL 115 (212)
Q Consensus 96 ~~~~~~~~~~i~~~c~glPL 115 (212)
-..+....|++.++|.+-
T Consensus 207 --ie~eAL~~Ia~~s~GslR 224 (507)
T PRK06645 207 --TDIEALRIIAYKSEGSAR 224 (507)
T ss_pred --CCHHHHHHHHHHcCCCHH
Confidence 123445667777777553
No 22
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.02 E-value=0.36 Score=42.31 Aligned_cols=94 Identities=11% Similarity=0.001 Sum_probs=59.9
Q ss_pred cCeEEEEecCCCCh--hhHhhhhcccCCCCCCcEEEEEcCCh-hHHhhc-CCCceEeCCCCChHHHHHHHHHhhcCCCCC
Q 047158 20 HRRVFVVLDNLDHI--DQLKPLAGENKWFGSGSRIIITNRNE-HLLKVF-EVDGVCTVPRLCLGKSFQLFSWHAFRKDKP 95 (212)
Q Consensus 20 ~kr~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~iivTtR~~-~~~~~~-~~~~~~~l~~l~~~~a~~Ll~~~~~~~~~~ 95 (212)
+++-++|+|+++.. ..++.|...+....+.+.+|++|... .+...+ .-...+++.+++.++..+.+...+-.....
T Consensus 115 ~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~SRc~~~~f~~ls~~el~~~L~~i~~~egi~ 194 (504)
T PRK14963 115 GGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILSRTQHFRFRRLTEEEIAGKLRRLLEAEGRE 194 (504)
T ss_pred CCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHhcceEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 45668999999854 45777776666554555555555433 332222 224579999999999999998766332211
Q ss_pred ChhHHHHHHHHHHHhCCCCc
Q 047158 96 PQRFMKLSRELLRCAEGLPL 115 (212)
Q Consensus 96 ~~~~~~~~~~i~~~c~glPL 115 (212)
-..+.+..|++.++|.+-
T Consensus 195 --i~~~Al~~ia~~s~GdlR 212 (504)
T PRK14963 195 --AEPEALQLVARLADGAMR 212 (504)
T ss_pred --CCHHHHHHHHHHcCCCHH
Confidence 123456778888888664
No 23
>PRK13342 recombination factor protein RarA; Reviewed
Probab=93.82 E-value=0.53 Score=40.17 Aligned_cols=95 Identities=19% Similarity=0.147 Sum_probs=57.4
Q ss_pred ccCeEEEEecCCCCh--hhHhhhhcccCCCCCCcEEEE--EcCChhHH---hhcCCCceEeCCCCChHHHHHHHHHhhcC
Q 047158 19 LHRRVFVVLDNLDHI--DQLKPLAGENKWFGSGSRIII--TNRNEHLL---KVFEVDGVCTVPRLCLGKSFQLFSWHAFR 91 (212)
Q Consensus 19 ~~kr~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~iiv--TtR~~~~~---~~~~~~~~~~l~~l~~~~a~~Ll~~~~~~ 91 (212)
.+++.+|++|+++.. .+.+.+.+.+.. |..+++ ||.+.... ....-...+.+.+++.++..+++.+....
T Consensus 90 ~g~~~vL~IDEi~~l~~~~q~~LL~~le~---~~iilI~att~n~~~~l~~aL~SR~~~~~~~~ls~e~i~~lL~~~l~~ 166 (413)
T PRK13342 90 AGRRTILFIDEIHRFNKAQQDALLPHVED---GTITLIGATTENPSFEVNPALLSRAQVFELKPLSEEDIEQLLKRALED 166 (413)
T ss_pred cCCceEEEEechhhhCHHHHHHHHHHhhc---CcEEEEEeCCCChhhhccHHHhccceeeEeCCCCHHHHHHHHHHHHHH
Confidence 457889999999854 455666655442 444444 34443211 11112357899999999999999876532
Q ss_pred CCC-CChhHHHHHHHHHHHhCCCCch
Q 047158 92 KDK-PPQRFMKLSRELLRCAEGLPLE 116 (212)
Q Consensus 92 ~~~-~~~~~~~~~~~i~~~c~glPLa 116 (212)
... ...-.......+++.|+|-|..
T Consensus 167 ~~~~~i~i~~~al~~l~~~s~Gd~R~ 192 (413)
T PRK13342 167 KERGLVELDDEALDALARLANGDARR 192 (413)
T ss_pred hhcCCCCCCHHHHHHHHHhCCCCHHH
Confidence 111 0012234567788889888765
No 24
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=93.74 E-value=0.42 Score=39.62 Aligned_cols=95 Identities=9% Similarity=0.026 Sum_probs=59.9
Q ss_pred cCeEEEEecCCCCh--hhHhhhhcccCCCCCCcEEEEEcCChh-HHhhc-CCCceEeCCCCChHHHHHHHHHhhcCCCCC
Q 047158 20 HRRVFVVLDNLDHI--DQLKPLAGENKWFGSGSRIIITNRNEH-LLKVF-EVDGVCTVPRLCLGKSFQLFSWHAFRKDKP 95 (212)
Q Consensus 20 ~kr~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~iivTtR~~~-~~~~~-~~~~~~~l~~l~~~~a~~Ll~~~~~~~~~~ 95 (212)
+++-++|+|+++.. .....+...+......+.+|++|.+.. +...+ .-...+++.+++.++..+.+...+-.....
T Consensus 116 ~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~ 195 (355)
T TIGR02397 116 GKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIK 195 (355)
T ss_pred CCceEEEEeChhhcCHHHHHHHHHHHhCCccceeEEEEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence 34558999999754 446666665554445666667765554 22222 123568889999999888888765332211
Q ss_pred ChhHHHHHHHHHHHhCCCCch
Q 047158 96 PQRFMKLSRELLRCAEGLPLE 116 (212)
Q Consensus 96 ~~~~~~~~~~i~~~c~glPLa 116 (212)
. ..+.+..+++.++|.|..
T Consensus 196 i--~~~a~~~l~~~~~g~~~~ 214 (355)
T TIGR02397 196 I--EDEALELIARAADGSLRD 214 (355)
T ss_pred C--CHHHHHHHHHHcCCChHH
Confidence 1 135567788889988755
No 25
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=93.43 E-value=0.47 Score=40.03 Aligned_cols=83 Identities=20% Similarity=0.253 Sum_probs=55.5
Q ss_pred ccchHHHHHHH-HHHhccCeEEEEecCCC--ChhhHhhhhcccCCCCCCcEEEE--EcCChhHHhh---cCCCceEeCCC
Q 047158 4 MESIDRGLNMM-SSRLLHRRVFVVLDNLD--HIDQLKPLAGENKWFGSGSRIII--TNRNEHLLKV---FEVDGVCTVPR 75 (212)
Q Consensus 4 ~~~~~~~~~~l-~~~L~~kr~LlvlDdv~--~~~~~~~l~~~~~~~~~gs~iiv--TtR~~~~~~~---~~~~~~~~l~~ 75 (212)
++++.+..+.- +....+++.+|.+|.|. +..+-+.|+|... +|.-|+| ||.|+...-. ..-..++.+++
T Consensus 86 vkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~QQD~lLp~vE---~G~iilIGATTENPsF~ln~ALlSR~~vf~lk~ 162 (436)
T COG2256 86 VKDLREIIEEARKNRLLGRRTILFLDEIHRFNKAQQDALLPHVE---NGTIILIGATTENPSFELNPALLSRARVFELKP 162 (436)
T ss_pred HHHHHHHHHHHHHHHhcCCceEEEEehhhhcChhhhhhhhhhhc---CCeEEEEeccCCCCCeeecHHHhhhhheeeeec
Confidence 44555555555 33345889999999997 4456677776554 4665665 5666533211 12356899999
Q ss_pred CChHHHHHHHHHhh
Q 047158 76 LCLGKSFQLFSWHA 89 (212)
Q Consensus 76 l~~~~a~~Ll~~~~ 89 (212)
|+.++-.+++.+..
T Consensus 163 L~~~di~~~l~ra~ 176 (436)
T COG2256 163 LSSEDIKKLLKRAL 176 (436)
T ss_pred CCHHHHHHHHHHHH
Confidence 99999999998844
No 26
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=93.41 E-value=0.55 Score=38.86 Aligned_cols=89 Identities=16% Similarity=0.139 Sum_probs=57.3
Q ss_pred eEEEEecCCCCh--hhHhhhhcccCCCCCCcEEEEEcCChhH-Hhhc-CCCceEeCCCCChHHHHHHHHHhhcCCCCCCh
Q 047158 22 RVFVVLDNLDHI--DQLKPLAGENKWFGSGSRIIITNRNEHL-LKVF-EVDGVCTVPRLCLGKSFQLFSWHAFRKDKPPQ 97 (212)
Q Consensus 22 r~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~iivTtR~~~~-~~~~-~~~~~~~l~~l~~~~a~~Ll~~~~~~~~~~~~ 97 (212)
+-.+|+|+++.. ...+.|+..+.....++.+|+||.+... ...+ .-...+.+.+++.++..+.+...... ..
T Consensus 107 ~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~~~---~~- 182 (328)
T PRK05707 107 RKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQALPE---SD- 182 (328)
T ss_pred CeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhccc---CC-
Confidence 334567999853 4566666655554567778888876643 2222 12456899999999999888765311 11
Q ss_pred hHHHHHHHHHHHhCCCCch
Q 047158 98 RFMKLSRELLRCAEGLPLE 116 (212)
Q Consensus 98 ~~~~~~~~i~~~c~glPLa 116 (212)
...+..++..++|.|+.
T Consensus 183 --~~~~~~~l~la~Gsp~~ 199 (328)
T PRK05707 183 --ERERIELLTLAGGSPLR 199 (328)
T ss_pred --hHHHHHHHHHcCCCHHH
Confidence 22345678889999975
No 27
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.98 E-value=0.72 Score=38.67 Aligned_cols=95 Identities=9% Similarity=0.055 Sum_probs=60.4
Q ss_pred cCeEEEEecCCCChh--hHhhhhcccCCCCCCcEEEEEcCChh-HHhhc-CCCceEeCCCCChHHHHHHHHHhhcCCCCC
Q 047158 20 HRRVFVVLDNLDHID--QLKPLAGENKWFGSGSRIIITNRNEH-LLKVF-EVDGVCTVPRLCLGKSFQLFSWHAFRKDKP 95 (212)
Q Consensus 20 ~kr~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~iivTtR~~~-~~~~~-~~~~~~~l~~l~~~~a~~Ll~~~~~~~~~~ 95 (212)
+++-++|+|+++... .++.++..+.......++|++|.+.. +...+ +-...+++.+++.++-.+.+...+-.....
T Consensus 118 ~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~~ 197 (363)
T PRK14961 118 SRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPKTILSRCLQFKLKIISEEKIFNFLKYILIKESID 197 (363)
T ss_pred CCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhhHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcCCC
Confidence 345689999998654 46667666655555666777765543 22222 123579999999999998887755332211
Q ss_pred ChhHHHHHHHHHHHhCCCCch
Q 047158 96 PQRFMKLSRELLRCAEGLPLE 116 (212)
Q Consensus 96 ~~~~~~~~~~i~~~c~glPLa 116 (212)
-.++.+..|++.++|.|-.
T Consensus 198 --i~~~al~~ia~~s~G~~R~ 216 (363)
T PRK14961 198 --TDEYALKLIAYHAHGSMRD 216 (363)
T ss_pred --CCHHHHHHHHHHcCCCHHH
Confidence 1234566788888887643
No 28
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=92.90 E-value=4.8 Score=33.46 Aligned_cols=182 Identities=15% Similarity=0.133 Sum_probs=93.5
Q ss_pred HHHHHHHHHHhc--cCeEEEEecCCCChh-----hHhhhhcc--cCC-CCCCcEEEEEcCChhHHhhcC-------CCce
Q 047158 8 DRGLNMMSSRLL--HRRVFVVLDNLDHID-----QLKPLAGE--NKW-FGSGSRIIITNRNEHLLKVFE-------VDGV 70 (212)
Q Consensus 8 ~~~~~~l~~~L~--~kr~LlvlDdv~~~~-----~~~~l~~~--~~~-~~~gs~iivTtR~~~~~~~~~-------~~~~ 70 (212)
++..+.+.+.+. +++++||||+++... .+..+... ... .+....+|.+|........+. ....
T Consensus 114 ~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i~n~~~~~~~l~~~~~s~~~~~~ 193 (365)
T TIGR02928 114 SEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGISNDLKFRENLDPRVKSSLCEEE 193 (365)
T ss_pred HHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEEECCcchHhhcCHHHhccCCcce
Confidence 334445555553 457899999998762 12232221 111 112234455554443322211 1246
Q ss_pred EeCCCCChHHHHHHHHHhhc---CCCCCChhHHHHHHHHHHHhCCCCch--------hh------hccCCchhHHH----
Q 047158 71 CTVPRLCLGKSFQLFSWHAF---RKDKPPQRFMKLSRELLRCAEGLPLE--------EK------LKRIPNEEILN---- 129 (212)
Q Consensus 71 ~~l~~l~~~~a~~Ll~~~~~---~~~~~~~~~~~~~~~i~~~c~glPLa--------~~------l~~~~~~~v~~---- 129 (212)
+.+++.+.++-.+++...+- ......++....+.+++....|.|-. .. ........+..
T Consensus 194 i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~~~a~~~~~~~it~~~v~~a~~~ 273 (365)
T TIGR02928 194 IIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVAGEIAEREGAERVTEDHVEKAQEK 273 (365)
T ss_pred eeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 88999999999999987763 11122223333445566666677633 00 01112222332
Q ss_pred ----HHHHhhcCCCCchhhhHHhhhhccCC----CCCHHHHHHhhh---h-cCCc------chhhHHHHhhccCceecC
Q 047158 130 ----KLRVSFDVLNDDEEKNVFMDIAHLFV----GMDKDYVLKILQ---G-CGFS------SEIVFFVLTQRCLIVIDE 190 (212)
Q Consensus 130 ----~l~~s~~~L~~~~~~~~~~~la~f~~----~~~~~~l~~~~~---~-~~~~------~~~~l~~L~~~sll~~~~ 190 (212)
...-+...| |.+.+.++..++.... .+....+..... . .+.. ...++..|...|+|+...
T Consensus 274 ~~~~~~~~~i~~l-~~~~~~~l~ai~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~l~~l~~~gli~~~~ 351 (365)
T TIGR02928 274 IEKDRLLELIRGL-PTHSKLVLLAIANLAANDEDPFRTGEVYEVYKEVCEDIGVDPLTQRRISDLLNELDMLGLVEAEE 351 (365)
T ss_pred HHHHHHHHHHHcC-CHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhcCCeEEEE
Confidence 233456788 7777766655543221 255554443221 1 1211 133699999999999753
No 29
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=92.85 E-value=0.35 Score=37.29 Aligned_cols=90 Identities=20% Similarity=0.181 Sum_probs=48.4
Q ss_pred EEEEecCCCChh---h-HhhhhcccCC-CCCCcEEEEEcCChh---------HHhhcCCCceEeCCCCChHHHHHHHHHh
Q 047158 23 VFVVLDNLDHID---Q-LKPLAGENKW-FGSGSRIIITNRNEH---------LLKVFEVDGVCTVPRLCLGKSFQLFSWH 88 (212)
Q Consensus 23 ~LlvlDdv~~~~---~-~~~l~~~~~~-~~~gs~iivTtR~~~---------~~~~~~~~~~~~l~~l~~~~a~~Ll~~~ 88 (212)
-+||+||++... . .+.+...+.. ...+..+|+||+... +.........+.+++++.++-..++...
T Consensus 92 ~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~~~~~i~l~~l~~~e~~~~l~~~ 171 (226)
T TIGR03420 92 DLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAWGLVFQLPPLSDEEKIAALQSR 171 (226)
T ss_pred CEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHHhcCeeEecCCCCHHHHHHHHHHH
Confidence 489999997542 2 2233322211 122346888887432 1112222457899999999888888765
Q ss_pred hcCCCCCChhHHHHHHHHHHHhCCCC
Q 047158 89 AFRKDKPPQRFMKLSRELLRCAEGLP 114 (212)
Q Consensus 89 ~~~~~~~~~~~~~~~~~i~~~c~glP 114 (212)
+-..... -.++....+.+.+.|.|
T Consensus 172 ~~~~~~~--~~~~~l~~L~~~~~gn~ 195 (226)
T TIGR03420 172 AARRGLQ--LPDEVADYLLRHGSRDM 195 (226)
T ss_pred HHHcCCC--CCHHHHHHHHHhccCCH
Confidence 4221111 11233455555555544
No 30
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=92.59 E-value=0.6 Score=42.13 Aligned_cols=96 Identities=10% Similarity=-0.010 Sum_probs=60.1
Q ss_pred ccCeEEEEecCCCC--hhhHhhhhcccCCCCCCcEEEEEcCChh-HHhhc-CCCceEeCCCCChHHHHHHHHHhhcCCCC
Q 047158 19 LHRRVFVVLDNLDH--IDQLKPLAGENKWFGSGSRIIITNRNEH-LLKVF-EVDGVCTVPRLCLGKSFQLFSWHAFRKDK 94 (212)
Q Consensus 19 ~~kr~LlvlDdv~~--~~~~~~l~~~~~~~~~gs~iivTtR~~~-~~~~~-~~~~~~~l~~l~~~~a~~Ll~~~~~~~~~ 94 (212)
.+++-++|+|+++. ....+.|+..+-......++|++|.+.. +...+ .-...+.+.+++.++..+.+.+..-....
T Consensus 117 ~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i 196 (647)
T PRK07994 117 RGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRQQLEHILQAEQI 196 (647)
T ss_pred cCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccchHHHhhheEeeCCCCCHHHHHHHHHHHHHHcCC
Confidence 35666899999985 3456677665554445555666655543 32221 12457999999999999888875522111
Q ss_pred CChhHHHHHHHHHHHhCCCCch
Q 047158 95 PPQRFMKLSRELLRCAEGLPLE 116 (212)
Q Consensus 95 ~~~~~~~~~~~i~~~c~glPLa 116 (212)
.........|++.++|.+-.
T Consensus 197 --~~e~~aL~~Ia~~s~Gs~R~ 216 (647)
T PRK07994 197 --PFEPRALQLLARAADGSMRD 216 (647)
T ss_pred --CCCHHHHHHHHHHcCCCHHH
Confidence 12234566788888887653
No 31
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.37 E-value=0.6 Score=42.14 Aligned_cols=96 Identities=8% Similarity=0.020 Sum_probs=61.9
Q ss_pred ccCeEEEEecCCCCh--hhHhhhhcccCCCCCCcEEEEEcCChh-HHhhc-CCCceEeCCCCChHHHHHHHHHhhcCCCC
Q 047158 19 LHRRVFVVLDNLDHI--DQLKPLAGENKWFGSGSRIIITNRNEH-LLKVF-EVDGVCTVPRLCLGKSFQLFSWHAFRKDK 94 (212)
Q Consensus 19 ~~kr~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~iivTtR~~~-~~~~~-~~~~~~~l~~l~~~~a~~Ll~~~~~~~~~ 94 (212)
.++.-++|+|+++.. ..++.|+..+.....++.+|++|.+.. +...+ .-...+.+..++.++..+.+.+.+.....
T Consensus 122 ~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi 201 (700)
T PRK12323 122 AGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGI 201 (700)
T ss_pred cCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhhhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcCC
Confidence 345668999999854 457777776665555666666665443 32222 12356899999999999988876532221
Q ss_pred CChhHHHHHHHHHHHhCCCCch
Q 047158 95 PPQRFMKLSRELLRCAEGLPLE 116 (212)
Q Consensus 95 ~~~~~~~~~~~i~~~c~glPLa 116 (212)
. ........|++.++|.|..
T Consensus 202 ~--~d~eAL~~IA~~A~Gs~Rd 221 (700)
T PRK12323 202 A--HEVNALRLLAQAAQGSMRD 221 (700)
T ss_pred C--CCHHHHHHHHHHcCCCHHH
Confidence 1 1234457788999998864
No 32
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=92.22 E-value=3 Score=34.42 Aligned_cols=89 Identities=12% Similarity=0.029 Sum_probs=57.8
Q ss_pred cCeEEEEecCCCChh--hHhhhhcccCCCCCCcEEEEEcCChhH-Hhhc-CCCceEeCCCCChHHHHHHHHHhhcCCCCC
Q 047158 20 HRRVFVVLDNLDHID--QLKPLAGENKWFGSGSRIIITNRNEHL-LKVF-EVDGVCTVPRLCLGKSFQLFSWHAFRKDKP 95 (212)
Q Consensus 20 ~kr~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~iivTtR~~~~-~~~~-~~~~~~~l~~l~~~~a~~Ll~~~~~~~~~~ 95 (212)
+++=++|+|+++... .-++|+-.+-+...++.+|++|.+... ...+ .-...+.+.+++.++..+.+.... .
T Consensus 112 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRCq~i~~~~~~~~~~~~~L~~~~-----~ 186 (319)
T PRK08769 112 GIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRLEFKLPPAHEALAWLLAQG-----V 186 (319)
T ss_pred CCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhheEeeCCCcCHHHHHHHHHHcC-----C
Confidence 345688999998643 345555555555567777777765433 3222 224568899999999988886531 1
Q ss_pred ChhHHHHHHHHHHHhCCCCch
Q 047158 96 PQRFMKLSRELLRCAEGLPLE 116 (212)
Q Consensus 96 ~~~~~~~~~~i~~~c~glPLa 116 (212)
. ...+..++..++|.|+.
T Consensus 187 ~---~~~a~~~~~l~~G~p~~ 204 (319)
T PRK08769 187 S---ERAAQEALDAARGHPGL 204 (319)
T ss_pred C---hHHHHHHHHHcCCCHHH
Confidence 1 12256778999999986
No 33
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=91.58 E-value=1.3 Score=37.67 Aligned_cols=90 Identities=10% Similarity=0.046 Sum_probs=57.7
Q ss_pred cCeEEEEecCCCCh--hhHhhhhcccCCCCCCcEEEEEcCChh-HHhhc-CCCceEeCCCCChHHHHHHHHHhhcCCCCC
Q 047158 20 HRRVFVVLDNLDHI--DQLKPLAGENKWFGSGSRIIITNRNEH-LLKVF-EVDGVCTVPRLCLGKSFQLFSWHAFRKDKP 95 (212)
Q Consensus 20 ~kr~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~iivTtR~~~-~~~~~-~~~~~~~l~~l~~~~a~~Ll~~~~~~~~~~ 95 (212)
+++-++|+|+++.. ...+.|+..+....+++.+|++|.+.. +...+ .-...+.+.+++.++..+.+..... .
T Consensus 116 ~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~----~ 191 (394)
T PRK07940 116 GRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDG----V 191 (394)
T ss_pred CCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhcC----C
Confidence 34457888999854 344556555554455666777766543 22222 2245799999999999888874321 1
Q ss_pred ChhHHHHHHHHHHHhCCCCch
Q 047158 96 PQRFMKLSRELLRCAEGLPLE 116 (212)
Q Consensus 96 ~~~~~~~~~~i~~~c~glPLa 116 (212)
. .+.+..++..++|.|..
T Consensus 192 ~---~~~a~~la~~s~G~~~~ 209 (394)
T PRK07940 192 D---PETARRAARASQGHIGR 209 (394)
T ss_pred C---HHHHHHHHHHcCCCHHH
Confidence 1 24467788999999975
No 34
>PRK09087 hypothetical protein; Validated
Probab=91.58 E-value=0.89 Score=35.47 Aligned_cols=66 Identities=15% Similarity=0.082 Sum_probs=42.7
Q ss_pred EEEEecCCCCh----hhHhhhhcccCCCCCCcEEEEEcCC---------hhHHhhcCCCceEeCCCCChHHHHHHHHHhh
Q 047158 23 VFVVLDNLDHI----DQLKPLAGENKWFGSGSRIIITNRN---------EHLLKVFEVDGVCTVPRLCLGKSFQLFSWHA 89 (212)
Q Consensus 23 ~LlvlDdv~~~----~~~~~l~~~~~~~~~gs~iivTtR~---------~~~~~~~~~~~~~~l~~l~~~~a~~Ll~~~~ 89 (212)
-+|++||+... +.+-.+..... ..|..+|+||+. +.+...+....++++++++.++-.+++.+.+
T Consensus 89 ~~l~iDDi~~~~~~~~~lf~l~n~~~--~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~ 166 (226)
T PRK09087 89 GPVLIEDIDAGGFDETGLFHLINSVR--QAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLF 166 (226)
T ss_pred CeEEEECCCCCCCCHHHHHHHHHHHH--hCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHH
Confidence 37888999632 22222222222 236679998863 3333334456789999999999999998877
Q ss_pred c
Q 047158 90 F 90 (212)
Q Consensus 90 ~ 90 (212)
-
T Consensus 167 ~ 167 (226)
T PRK09087 167 A 167 (226)
T ss_pred H
Confidence 3
No 35
>PRK08727 hypothetical protein; Validated
Probab=91.39 E-value=0.82 Score=35.79 Aligned_cols=69 Identities=20% Similarity=0.120 Sum_probs=41.9
Q ss_pred eEEEEecCCCChh---hHh-hhhcccCC-CCCCcEEEEEcCChh---------HHhhcCCCceEeCCCCChHHHHHHHHH
Q 047158 22 RVFVVLDNLDHID---QLK-PLAGENKW-FGSGSRIIITNRNEH---------LLKVFEVDGVCTVPRLCLGKSFQLFSW 87 (212)
Q Consensus 22 r~LlvlDdv~~~~---~~~-~l~~~~~~-~~~gs~iivTtR~~~---------~~~~~~~~~~~~l~~l~~~~a~~Ll~~ 87 (212)
.-+||+||+.... .+. .+...+.. ..+|..||+||+... +...+.....+++++++.++-.+++.+
T Consensus 94 ~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~ 173 (233)
T PRK08727 94 RSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRE 173 (233)
T ss_pred CCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHH
Confidence 4589999997331 221 22221111 124566999997432 222222345789999999999999997
Q ss_pred hhc
Q 047158 88 HAF 90 (212)
Q Consensus 88 ~~~ 90 (212)
.+.
T Consensus 174 ~a~ 176 (233)
T PRK08727 174 RAQ 176 (233)
T ss_pred HHH
Confidence 664
No 36
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.33 E-value=1.1 Score=41.98 Aligned_cols=95 Identities=8% Similarity=-0.042 Sum_probs=61.2
Q ss_pred ccCeEEEEecCCCC--hhhHhhhhcccCCCCCCcEEEEEcCChh-HHhhc-CCCceEeCCCCChHHHHHHHHHhhcCCCC
Q 047158 19 LHRRVFVVLDNLDH--IDQLKPLAGENKWFGSGSRIIITNRNEH-LLKVF-EVDGVCTVPRLCLGKSFQLFSWHAFRKDK 94 (212)
Q Consensus 19 ~~kr~LlvlDdv~~--~~~~~~l~~~~~~~~~gs~iivTtR~~~-~~~~~-~~~~~~~l~~l~~~~a~~Ll~~~~~~~~~ 94 (212)
.+++-++|+|++.. ....+.|+..+-......++|++|.+.. +...+ .-...+++.+++.++-.+.+.+.+-....
T Consensus 117 ~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~EgI 196 (944)
T PRK14949 117 RGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQL 196 (944)
T ss_pred cCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcCC
Confidence 35677999999985 4556777766655445666666665443 33221 12457999999999999888876532211
Q ss_pred CChhHHHHHHHHHHHhCCCCc
Q 047158 95 PPQRFMKLSRELLRCAEGLPL 115 (212)
Q Consensus 95 ~~~~~~~~~~~i~~~c~glPL 115 (212)
......+..|++.++|.|-
T Consensus 197 --~~edeAL~lIA~~S~Gd~R 215 (944)
T PRK14949 197 --PFEAEALTLLAKAANGSMR 215 (944)
T ss_pred --CCCHHHHHHHHHHcCCCHH
Confidence 1223456778888888764
No 37
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.68 E-value=1.9 Score=38.26 Aligned_cols=93 Identities=6% Similarity=-0.030 Sum_probs=56.9
Q ss_pred cCeEEEEecCCCCh--hhHhhhhcccCCCCCCcEEEEEcCCh-hHHhhc-CCCceEeCCCCChHHHHHHHHHhhcCCCCC
Q 047158 20 HRRVFVVLDNLDHI--DQLKPLAGENKWFGSGSRIIITNRNE-HLLKVF-EVDGVCTVPRLCLGKSFQLFSWHAFRKDKP 95 (212)
Q Consensus 20 ~kr~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~iivTtR~~-~~~~~~-~~~~~~~l~~l~~~~a~~Ll~~~~~~~~~~ 95 (212)
+++-++|+|+++.. ...+.|+..+......+.+|++|.+. .+...+ .-...+++.+++.++-.+.+...+-....
T Consensus 118 g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi- 196 (546)
T PRK14957 118 GRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENI- 196 (546)
T ss_pred CCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCC-
Confidence 46679999999853 45667776666544556566555433 233221 22467999999999988777765422111
Q ss_pred ChhHHHHHHHHHHHhCCCC
Q 047158 96 PQRFMKLSRELLRCAEGLP 114 (212)
Q Consensus 96 ~~~~~~~~~~i~~~c~glP 114 (212)
.-.......|++.++|-+
T Consensus 197 -~~e~~Al~~Ia~~s~Gdl 214 (546)
T PRK14957 197 -NSDEQSLEYIAYHAKGSL 214 (546)
T ss_pred -CCCHHHHHHHHHHcCCCH
Confidence 122344566777777754
No 38
>PLN03025 replication factor C subunit; Provisional
Probab=90.23 E-value=2.2 Score=35.03 Aligned_cols=93 Identities=13% Similarity=0.151 Sum_probs=54.7
Q ss_pred cCeEEEEecCCCChh--hHhhhhcccCCCCCCcEEEEEcCCh-hHHhhc-CCCceEeCCCCChHHHHHHHHHhhcCCCCC
Q 047158 20 HRRVFVVLDNLDHID--QLKPLAGENKWFGSGSRIIITNRNE-HLLKVF-EVDGVCTVPRLCLGKSFQLFSWHAFRKDKP 95 (212)
Q Consensus 20 ~kr~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~iivTtR~~-~~~~~~-~~~~~~~l~~l~~~~a~~Ll~~~~~~~~~~ 95 (212)
++.-++|+|+++... ....+...+......+++|+++... .+...+ .-...+++.+++.++-.+.+...+-.....
T Consensus 98 ~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~~i~f~~l~~~~l~~~L~~i~~~egi~ 177 (319)
T PLN03025 98 GRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEILGRLMKVVEAEKVP 177 (319)
T ss_pred CCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhhcccCCCCCHHHHHHHHHHHHHHcCCC
Confidence 346689999998542 3344444343334556677766432 221111 113468999999999988888766332211
Q ss_pred ChhHHHHHHHHHHHhCCCC
Q 047158 96 PQRFMKLSRELLRCAEGLP 114 (212)
Q Consensus 96 ~~~~~~~~~~i~~~c~glP 114 (212)
- ..+....|++.++|-.
T Consensus 178 i--~~~~l~~i~~~~~gDl 194 (319)
T PLN03025 178 Y--VPEGLEAIIFTADGDM 194 (319)
T ss_pred C--CHHHHHHHHHHcCCCH
Confidence 1 1345677788777744
No 39
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.21 E-value=2.1 Score=37.25 Aligned_cols=96 Identities=6% Similarity=-0.106 Sum_probs=59.7
Q ss_pred ccCeEEEEecCCCC--hhhHhhhhcccCCCCCCcEEEEEcCCh-hHHhhc-CCCceEeCCCCChHHHHHHHHHhhcCCCC
Q 047158 19 LHRRVFVVLDNLDH--IDQLKPLAGENKWFGSGSRIIITNRNE-HLLKVF-EVDGVCTVPRLCLGKSFQLFSWHAFRKDK 94 (212)
Q Consensus 19 ~~kr~LlvlDdv~~--~~~~~~l~~~~~~~~~gs~iivTtR~~-~~~~~~-~~~~~~~l~~l~~~~a~~Ll~~~~~~~~~ 94 (212)
.++.-++|+|+|+. ...+++|+..+........+|.+|.+. .+...+ .-...|.+.+++.++-.+.+...+-....
T Consensus 119 ~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI~SRCq~~~f~~ls~~~i~~~L~~i~~~Egi 198 (484)
T PRK14956 119 GGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETILSRCQDFIFKKVPLSVLQDYSEKLCKIENV 198 (484)
T ss_pred cCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHHHhhhheeeecCCCHHHHHHHHHHHHHHcCC
Confidence 34566899999985 455777776665444455555555443 332222 12346899999999988888776533221
Q ss_pred CChhHHHHHHHHHHHhCCCCch
Q 047158 95 PPQRFMKLSRELLRCAEGLPLE 116 (212)
Q Consensus 95 ~~~~~~~~~~~i~~~c~glPLa 116 (212)
.-..++...|++.++|.+-.
T Consensus 199 --~~e~eAL~~Ia~~S~Gd~Rd 218 (484)
T PRK14956 199 --QYDQEGLFWIAKKGDGSVRD 218 (484)
T ss_pred --CCCHHHHHHHHHHcCChHHH
Confidence 11234567788888887643
No 40
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=89.99 E-value=2.7 Score=34.41 Aligned_cols=92 Identities=13% Similarity=-0.013 Sum_probs=53.4
Q ss_pred CeEEEEecCCCChh--hHhhhhcccCCCCCCcEEEEEcCChh-HHhhc-CCCceEeCCCCChHHHHHHHHHhhcCCCCCC
Q 047158 21 RRVFVVLDNLDHID--QLKPLAGENKWFGSGSRIIITNRNEH-LLKVF-EVDGVCTVPRLCLGKSFQLFSWHAFRKDKPP 96 (212)
Q Consensus 21 kr~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~iivTtR~~~-~~~~~-~~~~~~~l~~l~~~~a~~Ll~~~~~~~~~~~ 96 (212)
.+-+||+||++... ....+...+....+.+++|+||.+.. +...+ .....+.+.+++.++..+++...+......
T Consensus 125 ~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~- 203 (337)
T PRK12402 125 DYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSKLIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVD- 203 (337)
T ss_pred CCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhhCchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCC-
Confidence 34589999997542 23344433333334567777775432 22222 123468889999999988888765332211
Q ss_pred hhHHHHHHHHHHHhCCCC
Q 047158 97 QRFMKLSRELLRCAEGLP 114 (212)
Q Consensus 97 ~~~~~~~~~i~~~c~glP 114 (212)
-..+....+++.++|.+
T Consensus 204 -~~~~al~~l~~~~~gdl 220 (337)
T PRK12402 204 -YDDDGLELIAYYAGGDL 220 (337)
T ss_pred -CCHHHHHHHHHHcCCCH
Confidence 12345667777776644
No 41
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.92 E-value=2.2 Score=38.75 Aligned_cols=94 Identities=10% Similarity=0.024 Sum_probs=59.7
Q ss_pred cCeEEEEecCCCCh--hhHhhhhcccCCCCCCcEEEEEcCChhHHh--hcCCCceEeCCCCChHHHHHHHHHhhcCCCCC
Q 047158 20 HRRVFVVLDNLDHI--DQLKPLAGENKWFGSGSRIIITNRNEHLLK--VFEVDGVCTVPRLCLGKSFQLFSWHAFRKDKP 95 (212)
Q Consensus 20 ~kr~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~iivTtR~~~~~~--~~~~~~~~~l~~l~~~~a~~Ll~~~~~~~~~~ 95 (212)
+++-++|+|+|... ...+.|+..+.....+..+|++|.+..... ...-...+++.+++.++..+.+...+-.....
T Consensus 117 gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI~ 196 (702)
T PRK14960 117 GRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVISRCLQFTLRPLAVDEITKHLGAILEKEQIA 196 (702)
T ss_pred CCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhhhHHHHHhhheeeccCCCHHHHHHHHHHHHHHcCCC
Confidence 56668999999854 456666665555445667787776543221 12234578999999999988887766332211
Q ss_pred ChhHHHHHHHHHHHhCCCCc
Q 047158 96 PQRFMKLSRELLRCAEGLPL 115 (212)
Q Consensus 96 ~~~~~~~~~~i~~~c~glPL 115 (212)
-.......|++.++|-+-
T Consensus 197 --id~eAL~~IA~~S~GdLR 214 (702)
T PRK14960 197 --ADQDAIWQIAESAQGSLR 214 (702)
T ss_pred --CCHHHHHHHHHHcCCCHH
Confidence 123445667777777553
No 42
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=89.49 E-value=3 Score=38.35 Aligned_cols=67 Identities=16% Similarity=0.179 Sum_probs=42.5
Q ss_pred cCeEEEEecCCCC--hhhHhhhhcccCCCCCCcEEEEE--cCChh--HHhhc-CCCceEeCCCCChHHHHHHHHHhh
Q 047158 20 HRRVFVVLDNLDH--IDQLKPLAGENKWFGSGSRIIIT--NRNEH--LLKVF-EVDGVCTVPRLCLGKSFQLFSWHA 89 (212)
Q Consensus 20 ~kr~LlvlDdv~~--~~~~~~l~~~~~~~~~gs~iivT--tR~~~--~~~~~-~~~~~~~l~~l~~~~a~~Ll~~~~ 89 (212)
+++.+|++|+++. ..+.+.+.+.+. .|+.++++ |.+.. +...+ .-..++.+++++.++...++.+..
T Consensus 108 ~~~~IL~IDEIh~Ln~~qQdaLL~~lE---~g~IiLI~aTTenp~~~l~~aL~SR~~v~~l~pLs~edi~~IL~~~l 181 (725)
T PRK13341 108 GKRTILFIDEVHRFNKAQQDALLPWVE---NGTITLIGATTENPYFEVNKALVSRSRLFRLKSLSDEDLHQLLKRAL 181 (725)
T ss_pred CCceEEEEeChhhCCHHHHHHHHHHhc---CceEEEEEecCCChHhhhhhHhhccccceecCCCCHHHHHHHHHHHH
Confidence 4577999999974 455666665443 34545553 44432 11111 124579999999999999998765
No 43
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.33 E-value=2.4 Score=38.22 Aligned_cols=93 Identities=9% Similarity=0.026 Sum_probs=57.6
Q ss_pred CeEEEEecCCCC--hhhHhhhhcccCCCCCCcEEEEEcCC-hhHHhh-cCCCceEeCCCCChHHHHHHHHHhhcCCCCCC
Q 047158 21 RRVFVVLDNLDH--IDQLKPLAGENKWFGSGSRIIITNRN-EHLLKV-FEVDGVCTVPRLCLGKSFQLFSWHAFRKDKPP 96 (212)
Q Consensus 21 kr~LlvlDdv~~--~~~~~~l~~~~~~~~~gs~iivTtR~-~~~~~~-~~~~~~~~l~~l~~~~a~~Ll~~~~~~~~~~~ 96 (212)
+.-++|+|+|+. ...++.|+..+......+++|++|.+ ..+... ..-...+++.+++.++-.+.+...+......
T Consensus 124 ~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~- 202 (618)
T PRK14951 124 RFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVP- 202 (618)
T ss_pred CceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchhhhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCCC-
Confidence 445889999985 44567777666554456666666544 222222 2234679999999999988888765332211
Q ss_pred hhHHHHHHHHHHHhCCCCc
Q 047158 97 QRFMKLSRELLRCAEGLPL 115 (212)
Q Consensus 97 ~~~~~~~~~i~~~c~glPL 115 (212)
-.......|++.++|-+-
T Consensus 203 -ie~~AL~~La~~s~GslR 220 (618)
T PRK14951 203 -AEPQALRLLARAARGSMR 220 (618)
T ss_pred -CCHHHHHHHHHHcCCCHH
Confidence 123456677777777553
No 44
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=89.31 E-value=2.8 Score=34.94 Aligned_cols=86 Identities=15% Similarity=0.094 Sum_probs=56.1
Q ss_pred CeEEEEecCCCCh--hhHhhhhcccCCCCCCcEEEEEcCChh-HHhhc-CCCceEeCCCCChHHHHHHHHHhhcCCCCCC
Q 047158 21 RRVFVVLDNLDHI--DQLKPLAGENKWFGSGSRIIITNRNEH-LLKVF-EVDGVCTVPRLCLGKSFQLFSWHAFRKDKPP 96 (212)
Q Consensus 21 kr~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~iivTtR~~~-~~~~~-~~~~~~~l~~l~~~~a~~Ll~~~~~~~~~~~ 96 (212)
++=.+|+|+++.. ...+.|+..+-+-.+++.+|++|.+.. +...+ .-...+.+.+++.++..+.|.... . .
T Consensus 132 ~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~--~---~ 206 (342)
T PRK06964 132 GARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQG--V---A 206 (342)
T ss_pred CceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcC--C---C
Confidence 4457888999854 456677766666566776777766543 33332 224578999999999998887642 1 1
Q ss_pred hhHHHHHHHHHHHhCCCCch
Q 047158 97 QRFMKLSRELLRCAEGLPLE 116 (212)
Q Consensus 97 ~~~~~~~~~i~~~c~glPLa 116 (212)
. ...++..++|.|+.
T Consensus 207 -~----~~~~l~~~~Gsp~~ 221 (342)
T PRK06964 207 -D----ADALLAEAGGAPLA 221 (342)
T ss_pred -h----HHHHHHHcCCCHHH
Confidence 1 12356778999975
No 45
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=89.20 E-value=3.6 Score=33.93 Aligned_cols=86 Identities=14% Similarity=0.135 Sum_probs=57.5
Q ss_pred CeEEEEecCCCCh--hhHhhhhcccCCCCCCcEEEEEcCChh-HHhhc-CCCceEeCCCCChHHHHHHHHHhhcCCCCCC
Q 047158 21 RRVFVVLDNLDHI--DQLKPLAGENKWFGSGSRIIITNRNEH-LLKVF-EVDGVCTVPRLCLGKSFQLFSWHAFRKDKPP 96 (212)
Q Consensus 21 kr~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~iivTtR~~~-~~~~~-~~~~~~~l~~l~~~~a~~Ll~~~~~~~~~~~ 96 (212)
++=.+|+|+++.. ...++|+..+-+..+++.+|++|.+.. +...+ .--..+.+.+++.++..+.+.... . .
T Consensus 108 ~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRCq~~~~~~~~~~~~~~~L~~~~---~--~ 182 (319)
T PRK06090 108 GYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQQWVVTPPSTAQAMQWLKGQG---I--T 182 (319)
T ss_pred CceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcceeEeCCCCCHHHHHHHHHHcC---C--c
Confidence 3457888999854 346666666655556777777776653 33332 234578999999999998886532 1 1
Q ss_pred hhHHHHHHHHHHHhCCCCch
Q 047158 97 QRFMKLSRELLRCAEGLPLE 116 (212)
Q Consensus 97 ~~~~~~~~~i~~~c~glPLa 116 (212)
.+..+++.++|.|+.
T Consensus 183 -----~~~~~l~l~~G~p~~ 197 (319)
T PRK06090 183 -----VPAYALKLNMGSPLK 197 (319)
T ss_pred -----hHHHHHHHcCCCHHH
Confidence 134568889999987
No 46
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=89.19 E-value=4.2 Score=33.65 Aligned_cols=90 Identities=10% Similarity=0.029 Sum_probs=58.7
Q ss_pred cCeEEEEecCCCChh--hHhhhhcccCCCCCCcEEEEEcCChh-HHhhc-CCCceEeCCCCChHHHHHHHHHhhcCCCCC
Q 047158 20 HRRVFVVLDNLDHID--QLKPLAGENKWFGSGSRIIITNRNEH-LLKVF-EVDGVCTVPRLCLGKSFQLFSWHAFRKDKP 95 (212)
Q Consensus 20 ~kr~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~iivTtR~~~-~~~~~-~~~~~~~l~~l~~~~a~~Ll~~~~~~~~~~ 95 (212)
+++=.+|+|+++... ...+|+-.+-+..+++.+|++|.+.. +...+ .-...+.+.+++.++..+.+......
T Consensus 106 g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~~~~~~~~~~~~~~~~L~~~~~~---- 181 (325)
T PRK06871 106 GGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQTWLIHPPEEQQALDWLQAQSSA---- 181 (325)
T ss_pred CCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhceEEeCCCCCHHHHHHHHHHHhcc----
Confidence 445578899998643 45666665655556777888876653 33232 22457899999999999888765311
Q ss_pred ChhHHHHHHHHHHHhCCCCch
Q 047158 96 PQRFMKLSRELLRCAEGLPLE 116 (212)
Q Consensus 96 ~~~~~~~~~~i~~~c~glPLa 116 (212)
. ...+...+..++|.|+.
T Consensus 182 ~---~~~~~~~~~l~~g~p~~ 199 (325)
T PRK06871 182 E---ISEILTALRINYGRPLL 199 (325)
T ss_pred C---hHHHHHHHHHcCCCHHH
Confidence 1 11245567788998864
No 47
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=89.09 E-value=2.1 Score=38.47 Aligned_cols=95 Identities=12% Similarity=0.012 Sum_probs=58.5
Q ss_pred cCeEEEEecCCCCh--hhHhhhhcccCCCCCCcEEEEEc-CChhHHhhc-CCCceEeCCCCChHHHHHHHHHhhcCCCCC
Q 047158 20 HRRVFVVLDNLDHI--DQLKPLAGENKWFGSGSRIIITN-RNEHLLKVF-EVDGVCTVPRLCLGKSFQLFSWHAFRKDKP 95 (212)
Q Consensus 20 ~kr~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~iivTt-R~~~~~~~~-~~~~~~~l~~l~~~~a~~Ll~~~~~~~~~~ 95 (212)
+++-++|+|+++.. ...+.|+..+.....++++|++| ....+...+ .-...+++.+++.++....+.+.+-.....
T Consensus 131 a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~kll~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~ 210 (598)
T PRK09111 131 ARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRKVPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVE 210 (598)
T ss_pred CCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 34557899999754 34666666555545566666555 333333222 224578999999999988888765332211
Q ss_pred ChhHHHHHHHHHHHhCCCCch
Q 047158 96 PQRFMKLSRELLRCAEGLPLE 116 (212)
Q Consensus 96 ~~~~~~~~~~i~~~c~glPLa 116 (212)
-..+.+..|++.++|-+..
T Consensus 211 --i~~eAl~lIa~~a~Gdlr~ 229 (598)
T PRK09111 211 --VEDEALALIARAAEGSVRD 229 (598)
T ss_pred --CCHHHHHHHHHHcCCCHHH
Confidence 1234566778888886654
No 48
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=89.01 E-value=1 Score=41.01 Aligned_cols=95 Identities=7% Similarity=-0.002 Sum_probs=57.1
Q ss_pred cCeEEEEecCCCChh--hHhhhhcccCCCCCCcEEEEEcCChh-HHhh-cCCCceEeCCCCChHHHHHHHHHhhcCCCCC
Q 047158 20 HRRVFVVLDNLDHID--QLKPLAGENKWFGSGSRIIITNRNEH-LLKV-FEVDGVCTVPRLCLGKSFQLFSWHAFRKDKP 95 (212)
Q Consensus 20 ~kr~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~iivTtR~~~-~~~~-~~~~~~~~l~~l~~~~a~~Ll~~~~~~~~~~ 95 (212)
+++-++|+|+++... ..+.|+..+......+++|++|.+.. +... .+-...+.+.+++.++....+.+.+-.....
T Consensus 118 gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~ 197 (709)
T PRK08691 118 GKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIA 197 (709)
T ss_pred CCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCccccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCCC
Confidence 566789999998643 34555554443334566776665442 2111 1122357888999999988887766332211
Q ss_pred ChhHHHHHHHHHHHhCCCCch
Q 047158 96 PQRFMKLSRELLRCAEGLPLE 116 (212)
Q Consensus 96 ~~~~~~~~~~i~~~c~glPLa 116 (212)
-.......|++.++|-+--
T Consensus 198 --id~eAL~~Ia~~A~GslRd 216 (709)
T PRK08691 198 --YEPPALQLLGRAAAGSMRD 216 (709)
T ss_pred --cCHHHHHHHHHHhCCCHHH
Confidence 1234567788888886643
No 49
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.04 E-value=3.3 Score=37.38 Aligned_cols=93 Identities=9% Similarity=0.073 Sum_probs=57.1
Q ss_pred cCeEEEEecCCCCh--hhHhhhhcccCCCCCCcEEEEEc-CChhHHhhc-CCCceEeCCCCChHHHHHHHHHhhcCCCCC
Q 047158 20 HRRVFVVLDNLDHI--DQLKPLAGENKWFGSGSRIIITN-RNEHLLKVF-EVDGVCTVPRLCLGKSFQLFSWHAFRKDKP 95 (212)
Q Consensus 20 ~kr~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~iivTt-R~~~~~~~~-~~~~~~~l~~l~~~~a~~Ll~~~~~~~~~~ 95 (212)
+++=++|+|+++.. ..++.|...+.....++.+|++| +...+...+ .-..++++.+++.++....+...+-.....
T Consensus 120 ~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~ 199 (614)
T PRK14971 120 GKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGIT 199 (614)
T ss_pred CCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCC
Confidence 34557899999854 44666666665544566655544 444444332 235679999999999988887655332211
Q ss_pred ChhHHHHHHHHHHHhCCCC
Q 047158 96 PQRFMKLSRELLRCAEGLP 114 (212)
Q Consensus 96 ~~~~~~~~~~i~~~c~glP 114 (212)
-....+..|++.++|-.
T Consensus 200 --i~~~al~~La~~s~gdl 216 (614)
T PRK14971 200 --AEPEALNVIAQKADGGM 216 (614)
T ss_pred --CCHHHHHHHHHHcCCCH
Confidence 12345667777777744
No 50
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=87.95 E-value=3.6 Score=37.07 Aligned_cols=93 Identities=12% Similarity=0.005 Sum_probs=56.0
Q ss_pred cCeEEEEecCCCCh--hhHhhhhcccCCCCCCcEEEEEcCCh-hHHhhc-CCCceEeCCCCChHHHHHHHHHhhcCCCCC
Q 047158 20 HRRVFVVLDNLDHI--DQLKPLAGENKWFGSGSRIIITNRNE-HLLKVF-EVDGVCTVPRLCLGKSFQLFSWHAFRKDKP 95 (212)
Q Consensus 20 ~kr~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~iivTtR~~-~~~~~~-~~~~~~~l~~l~~~~a~~Ll~~~~~~~~~~ 95 (212)
+++-++|+|+++.. ...+.|+..+........+|++|.+. .+...+ .-...+++.+++.++..+.+...+......
T Consensus 118 g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi~ 197 (624)
T PRK14959 118 GRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGVD 197 (624)
T ss_pred CCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhhHHHHhhhhccccCCCCHHHHHHHHHHHHHHcCCC
Confidence 45668999999754 44666666554433455566655543 333222 123468999999999998887755332211
Q ss_pred ChhHHHHHHHHHHHhCCCC
Q 047158 96 PQRFMKLSRELLRCAEGLP 114 (212)
Q Consensus 96 ~~~~~~~~~~i~~~c~glP 114 (212)
-..+.+..|++.++|-+
T Consensus 198 --id~eal~lIA~~s~Gdl 214 (624)
T PRK14959 198 --YDPAAVRLIARRAAGSV 214 (624)
T ss_pred --CCHHHHHHHHHHcCCCH
Confidence 11344566777777644
No 51
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=87.88 E-value=3.3 Score=36.30 Aligned_cols=94 Identities=6% Similarity=0.013 Sum_probs=59.2
Q ss_pred cCeEEEEecCCCCh--hhHhhhhcccCCCCCCcEEEEEcCC-hhHHhhc-CCCceEeCCCCChHHHHHHHHHhhcCCCCC
Q 047158 20 HRRVFVVLDNLDHI--DQLKPLAGENKWFGSGSRIIITNRN-EHLLKVF-EVDGVCTVPRLCLGKSFQLFSWHAFRKDKP 95 (212)
Q Consensus 20 ~kr~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~iivTtR~-~~~~~~~-~~~~~~~l~~l~~~~a~~Ll~~~~~~~~~~ 95 (212)
+++=++|+|+++.. ...+.|+..+....+.+++|++|.+ ..+...+ .-...+++.+++.++-.+.+...+......
T Consensus 115 ~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIlatte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~ 194 (491)
T PRK14964 115 SKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIE 194 (491)
T ss_pred CCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEEeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCCC
Confidence 45568999999743 4466776666655566666666543 3333322 234678999999999988888766432221
Q ss_pred ChhHHHHHHHHHHHhCCCCc
Q 047158 96 PQRFMKLSRELLRCAEGLPL 115 (212)
Q Consensus 96 ~~~~~~~~~~i~~~c~glPL 115 (212)
-.++.+..|++.++|-+-
T Consensus 195 --i~~eAL~lIa~~s~GslR 212 (491)
T PRK14964 195 --HDEESLKLIAENSSGSMR 212 (491)
T ss_pred --CCHHHHHHHHHHcCCCHH
Confidence 123445677778877654
No 52
>PRK08084 DNA replication initiation factor; Provisional
Probab=87.83 E-value=2.6 Score=33.01 Aligned_cols=67 Identities=18% Similarity=0.206 Sum_probs=40.6
Q ss_pred EEEEecCCCCh---hhHhh----hhcccCCCCCCcEEEEEcCChh---------HHhhcCCCceEeCCCCChHHHHHHHH
Q 047158 23 VFVVLDNLDHI---DQLKP----LAGENKWFGSGSRIIITNRNEH---------LLKVFEVDGVCTVPRLCLGKSFQLFS 86 (212)
Q Consensus 23 ~LlvlDdv~~~---~~~~~----l~~~~~~~~~gs~iivTtR~~~---------~~~~~~~~~~~~l~~l~~~~a~~Ll~ 86 (212)
-+|++||+... ..|+. +....... .+.++|+||+... +...+....++++.+++.++-.+++.
T Consensus 99 dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~-g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~ 177 (235)
T PRK08084 99 SLVCIDNIECIAGDELWEMAIFDLYNRILES-GRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQ 177 (235)
T ss_pred CEEEEeChhhhcCCHHHHHHHHHHHHHHHHc-CCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHHH
Confidence 37899999643 22321 11111111 1236899987552 22233455789999999999999888
Q ss_pred Hhhc
Q 047158 87 WHAF 90 (212)
Q Consensus 87 ~~~~ 90 (212)
+.+.
T Consensus 178 ~~a~ 181 (235)
T PRK08084 178 LRAR 181 (235)
T ss_pred HHHH
Confidence 7553
No 53
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=87.78 E-value=15 Score=31.24 Aligned_cols=161 Identities=14% Similarity=0.091 Sum_probs=93.2
Q ss_pred CeEEEEecCCCChhhHhhhhcccCCCCCCcEEEEEcCChhHHhh-----c-CCCceEeCCCCChHHHHHHHHHhhcCCCC
Q 047158 21 RRVFVVLDNLDHIDQLKPLAGENKWFGSGSRIIITNRNEHLLKV-----F-EVDGVCTVPRLCLGKSFQLFSWHAFRKDK 94 (212)
Q Consensus 21 kr~LlvlDdv~~~~~~~~l~~~~~~~~~gs~iivTtR~~~~~~~-----~-~~~~~~~l~~l~~~~a~~Ll~~~~~~~~~ 94 (212)
++..++||.|.....|......+.+.++. +|++|+-+...... . |-...+++-||+-.|-..+-.... .
T Consensus 94 ~~~yifLDEIq~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~~~~~~~----~ 168 (398)
T COG1373 94 EKSYIFLDEIQNVPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLKLKGEEI----E 168 (398)
T ss_pred CCceEEEecccCchhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHhhccccc----c
Confidence 66899999999999999888888777766 78888866544322 1 234568899999988766533000 0
Q ss_pred CChhHHHHHHHHHHHhCCCCchhhhccC---CchhHHHHHH---HhhcC-CCCchhhhHHhhhhccCC-CCCHHHHHHhh
Q 047158 95 PPQRFMKLSRELLRCAEGLPLEEKLKRI---PNEEILNKLR---VSFDV-LNDDEEKNVFMDIAHLFV-GMDKDYVLKIL 166 (212)
Q Consensus 95 ~~~~~~~~~~~i~~~c~glPLa~~l~~~---~~~~v~~~l~---~s~~~-L~~~~~~~~~~~la~f~~-~~~~~~l~~~~ 166 (212)
.. .... .-+---..||+|-+-..... ...-+...+. ..... ......++.+..++.... .+....+...+
T Consensus 169 ~~-~~~~-~f~~Yl~~GGfP~~v~~~~~~~~~~~~~~~~~~~Di~~~~~~~~~~~~k~i~~~l~~~~g~~~s~~~la~~l 246 (398)
T COG1373 169 PS-KLEL-LFEKYLETGGFPESVKADLSEKKLKEYLDTILKRDIIERGKIENADLMKRILRFLASNIGSPISYSSLAREL 246 (398)
T ss_pred hh-HHHH-HHHHHHHhCCCcHHHhCcchhhHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHhhcCCccCHHHHHHHH
Confidence 00 1111 11222357999987111110 0111111111 11111 112356666666666554 58999988888
Q ss_pred h-hcCCcchhhHHHHhhccCcee
Q 047158 167 Q-GCGFSSEIVFFVLTQRCLIVI 188 (212)
Q Consensus 167 ~-~~~~~~~~~l~~L~~~sll~~ 188 (212)
. -+......+++.|.+.-++..
T Consensus 247 ~~is~~Ti~~Yl~~le~~fll~~ 269 (398)
T COG1373 247 KGISKDTIRKYLSYLEDAFLLFL 269 (398)
T ss_pred hccchHHHHHHHHHHHHhhheEE
Confidence 3 444445667777777777663
No 54
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=87.68 E-value=3.6 Score=36.94 Aligned_cols=95 Identities=9% Similarity=-0.010 Sum_probs=59.1
Q ss_pred cCeEEEEecCCCCh--hhHhhhhcccCCCCCCcEEEEEcCCh-hHHhhc-CCCceEeCCCCChHHHHHHHHHhhcCCCCC
Q 047158 20 HRRVFVVLDNLDHI--DQLKPLAGENKWFGSGSRIIITNRNE-HLLKVF-EVDGVCTVPRLCLGKSFQLFSWHAFRKDKP 95 (212)
Q Consensus 20 ~kr~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~iivTtR~~-~~~~~~-~~~~~~~l~~l~~~~a~~Ll~~~~~~~~~~ 95 (212)
+++-++|+|+++.. +..+.|+..+......+.+|++|.+. .+...+ .-...+.+..++.++....+.+.+......
T Consensus 119 ~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl~ 198 (585)
T PRK14950 119 ARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVPATILSRCQRFDFHRHSVADMAAHLRKIAAAEGIN 198 (585)
T ss_pred CCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhhHHHHhccceeeCCCCCHHHHHHHHHHHHHHcCCC
Confidence 34668999999743 45666666555444566666666443 232222 123568899999998888887765432211
Q ss_pred ChhHHHHHHHHHHHhCCCCch
Q 047158 96 PQRFMKLSRELLRCAEGLPLE 116 (212)
Q Consensus 96 ~~~~~~~~~~i~~~c~glPLa 116 (212)
. ..+.+..+++.++|.+-.
T Consensus 199 i--~~eal~~La~~s~Gdlr~ 217 (585)
T PRK14950 199 L--EPGALEAIARAATGSMRD 217 (585)
T ss_pred C--CHHHHHHHHHHcCCCHHH
Confidence 1 134567788888887754
No 55
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=87.65 E-value=3.5 Score=35.72 Aligned_cols=93 Identities=9% Similarity=0.055 Sum_probs=55.6
Q ss_pred cCeEEEEecCCCCh--hhHhhhhcccCCCCCCcEEEEEcCC-hhHHhhc-CCCceEeCCCCChHHHHHHHHHhhcCCCCC
Q 047158 20 HRRVFVVLDNLDHI--DQLKPLAGENKWFGSGSRIIITNRN-EHLLKVF-EVDGVCTVPRLCLGKSFQLFSWHAFRKDKP 95 (212)
Q Consensus 20 ~kr~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~iivTtR~-~~~~~~~-~~~~~~~l~~l~~~~a~~Ll~~~~~~~~~~ 95 (212)
+++-++|+|+++.. ...+.|...+.....++.+|++|.+ ..+...+ .-...+++.+++.++....+...+-.....
T Consensus 120 ~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~~ 199 (451)
T PRK06305 120 SRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGIE 199 (451)
T ss_pred CCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEEEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCCC
Confidence 55678899999754 3455555555544445556665533 3332222 124578999999999888887655322111
Q ss_pred ChhHHHHHHHHHHHhCCCC
Q 047158 96 PQRFMKLSRELLRCAEGLP 114 (212)
Q Consensus 96 ~~~~~~~~~~i~~~c~glP 114 (212)
-..+.+..|++.++|-+
T Consensus 200 --i~~~al~~L~~~s~gdl 216 (451)
T PRK06305 200 --TSREALLPIARAAQGSL 216 (451)
T ss_pred --CCHHHHHHHHHHcCCCH
Confidence 12345667788887754
No 56
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=87.55 E-value=3.6 Score=38.42 Aligned_cols=94 Identities=7% Similarity=0.001 Sum_probs=57.7
Q ss_pred cCeEEEEecCCCCh--hhHhhhhcccCCCCCCcEEEEEcCCh-hHHhhcC-CCceEeCCCCChHHHHHHHHHhhcCCCCC
Q 047158 20 HRRVFVVLDNLDHI--DQLKPLAGENKWFGSGSRIIITNRNE-HLLKVFE-VDGVCTVPRLCLGKSFQLFSWHAFRKDKP 95 (212)
Q Consensus 20 ~kr~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~iivTtR~~-~~~~~~~-~~~~~~l~~l~~~~a~~Ll~~~~~~~~~~ 95 (212)
+++-++|+|+++.. ...+.|+..+.+....+.+|++|.+. .+...+. -...|++..++.++-.+.+.+..-.....
T Consensus 119 ~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv~ 198 (824)
T PRK07764 119 SRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGVP 198 (824)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCCC
Confidence 45557889999854 45666666666555566666655443 3333322 35678999999999888887654221111
Q ss_pred ChhHHHHHHHHHHHhCCCCc
Q 047158 96 PQRFMKLSRELLRCAEGLPL 115 (212)
Q Consensus 96 ~~~~~~~~~~i~~~c~glPL 115 (212)
........|++.++|-+.
T Consensus 199 --id~eal~lLa~~sgGdlR 216 (824)
T PRK07764 199 --VEPGVLPLVIRAGGGSVR 216 (824)
T ss_pred --CCHHHHHHHHHHcCCCHH
Confidence 123345667777887663
No 57
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=86.84 E-value=1.8 Score=31.83 Aligned_cols=51 Identities=16% Similarity=0.197 Sum_probs=30.6
Q ss_pred HHHHHHHHhccC-eEEEEecCCCChh-----hHhhhhcccCCCCCCcEEEEEcCChh
Q 047158 10 GLNMMSSRLLHR-RVFVVLDNLDHID-----QLKPLAGENKWFGSGSRIIITNRNEH 60 (212)
Q Consensus 10 ~~~~l~~~L~~k-r~LlvlDdv~~~~-----~~~~l~~~~~~~~~gs~iivTtR~~~ 60 (212)
..+..++.+... -=|+|||.+-..- ..+.+...+.....+..||+|.|+..
T Consensus 83 ~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p 139 (159)
T cd00561 83 GWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 344555555554 4599999995431 22333333333445678999999864
No 58
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=86.34 E-value=4.5 Score=33.24 Aligned_cols=91 Identities=19% Similarity=0.132 Sum_probs=56.1
Q ss_pred cCeEEEEecCCCChh--hHhhhhcccCCCCCCcEEEEEcCCh-hHHhhc-CCCceEeCCCCChHHHHHHHHHhhcCCCCC
Q 047158 20 HRRVFVVLDNLDHID--QLKPLAGENKWFGSGSRIIITNRNE-HLLKVF-EVDGVCTVPRLCLGKSFQLFSWHAFRKDKP 95 (212)
Q Consensus 20 ~kr~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~iivTtR~~-~~~~~~-~~~~~~~l~~l~~~~a~~Ll~~~~~~~~~~ 95 (212)
+++-++|+|+++... ..++|+..+.... .+.+|++|.+. .+...+ .-...+++.+++.++..+.+....... .
T Consensus 123 ~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~fILi~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~--~ 199 (314)
T PRK07399 123 APRKVVVIEDAETMNEAAANALLKTLEEPG-NGTLILIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEE--I 199 (314)
T ss_pred CCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCeEEEEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhccc--c
Confidence 456688999997543 4555655554444 34555555444 333322 235679999999999999998764211 1
Q ss_pred ChhHHHHHHHHHHHhCCCCch
Q 047158 96 PQRFMKLSRELLRCAEGLPLE 116 (212)
Q Consensus 96 ~~~~~~~~~~i~~~c~glPLa 116 (212)
. ......++..++|.|..
T Consensus 200 ~---~~~~~~l~~~a~Gs~~~ 217 (314)
T PRK07399 200 L---NINFPELLALAQGSPGA 217 (314)
T ss_pred c---hhHHHHHHHHcCCCHHH
Confidence 1 11135678889999875
No 59
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=86.15 E-value=3.4 Score=35.14 Aligned_cols=94 Identities=10% Similarity=-0.034 Sum_probs=57.3
Q ss_pred cCeEEEEecCCCCh--hhHhhhhcccCCCCCCcEEEEEc-CChhHHhhcC-CCceEeCCCCChHHHHHHHHHhhcCCCCC
Q 047158 20 HRRVFVVLDNLDHI--DQLKPLAGENKWFGSGSRIIITN-RNEHLLKVFE-VDGVCTVPRLCLGKSFQLFSWHAFRKDKP 95 (212)
Q Consensus 20 ~kr~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~iivTt-R~~~~~~~~~-~~~~~~l~~l~~~~a~~Ll~~~~~~~~~~ 95 (212)
+++-++|+|+++.. ..++.+...+....+.+.+|++| +...+...+. ....+++.+++.++..+.+...+-....
T Consensus 126 ~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~- 204 (397)
T PRK14955 126 GRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKIPATIASRCQRFNFKRIPLEEIQQQLQGICEAEGI- 204 (397)
T ss_pred CCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHHhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCC-
Confidence 34568899999854 45677776666555566666555 3333333221 1346889999999888877765522111
Q ss_pred ChhHHHHHHHHHHHhCCCCc
Q 047158 96 PQRFMKLSRELLRCAEGLPL 115 (212)
Q Consensus 96 ~~~~~~~~~~i~~~c~glPL 115 (212)
.-..+.+..+++.++|.+-
T Consensus 205 -~i~~~al~~l~~~s~g~lr 223 (397)
T PRK14955 205 -SVDADALQLIGRKAQGSMR 223 (397)
T ss_pred -CCCHHHHHHHHHHcCCCHH
Confidence 1123456778888888553
No 60
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=86.14 E-value=3.9 Score=34.21 Aligned_cols=93 Identities=6% Similarity=0.047 Sum_probs=53.5
Q ss_pred cCeEEEEecCCCCh--hhHhhhhcccCCCCCCcEEEEEc-CChhHHhhc-CCCceEeCCCCChHHHHHHHHHhhcCCCCC
Q 047158 20 HRRVFVVLDNLDHI--DQLKPLAGENKWFGSGSRIIITN-RNEHLLKVF-EVDGVCTVPRLCLGKSFQLFSWHAFRKDKP 95 (212)
Q Consensus 20 ~kr~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~iivTt-R~~~~~~~~-~~~~~~~l~~l~~~~a~~Ll~~~~~~~~~~ 95 (212)
+++-++++|+++.. ..++.+...+......+.+|++| ....+...+ .....++..+++.++....+...+......
T Consensus 107 ~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~l~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~~ 186 (367)
T PRK14970 107 GKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILSRCQIFDFKRITIKDIKEHLAGIAVKEGIK 186 (367)
T ss_pred CCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHHHHhcceeEecCCccHHHHHHHHHHHHHHcCCC
Confidence 34558999999753 34666655444333445555555 332322221 124468999999999888887765432221
Q ss_pred ChhHHHHHHHHHHHhCCCC
Q 047158 96 PQRFMKLSRELLRCAEGLP 114 (212)
Q Consensus 96 ~~~~~~~~~~i~~~c~glP 114 (212)
- .++.+..++..++|-+
T Consensus 187 i--~~~al~~l~~~~~gdl 203 (367)
T PRK14970 187 F--EDDALHIIAQKADGAL 203 (367)
T ss_pred C--CHHHHHHHHHhCCCCH
Confidence 1 1345666777777644
No 61
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=86.13 E-value=6.1 Score=32.82 Aligned_cols=90 Identities=12% Similarity=0.018 Sum_probs=59.0
Q ss_pred cCeEEEEecCCCCh--hhHhhhhcccCCCCCCcEEEEEcCChh-HHhhc-CCCceEeCCCCChHHHHHHHHHhhcCCCCC
Q 047158 20 HRRVFVVLDNLDHI--DQLKPLAGENKWFGSGSRIIITNRNEH-LLKVF-EVDGVCTVPRLCLGKSFQLFSWHAFRKDKP 95 (212)
Q Consensus 20 ~kr~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~iivTtR~~~-~~~~~-~~~~~~~l~~l~~~~a~~Ll~~~~~~~~~~ 95 (212)
+++=.+|+|+++.. ...++|+-.+-+-..++.+|++|.+.. +...+ .-...+.+.+++.++..+.+.... + .
T Consensus 107 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSRCq~~~~~~~~~~~~~~~L~~~~-~---~ 182 (334)
T PRK07993 107 GGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSRCRLHYLAPPPEQYALTWLSREV-T---M 182 (334)
T ss_pred CCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhccccccCCCCCHHHHHHHHHHcc-C---C
Confidence 45668889999854 345666665555556777777777654 33332 223468899999999988886432 1 1
Q ss_pred ChhHHHHHHHHHHHhCCCCch
Q 047158 96 PQRFMKLSRELLRCAEGLPLE 116 (212)
Q Consensus 96 ~~~~~~~~~~i~~~c~glPLa 116 (212)
+ ...+..++..++|.|..
T Consensus 183 ~---~~~a~~~~~la~G~~~~ 200 (334)
T PRK07993 183 S---QDALLAALRLSAGAPGA 200 (334)
T ss_pred C---HHHHHHHHHHcCCCHHH
Confidence 1 22356778899999975
No 62
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=86.09 E-value=8.3 Score=34.91 Aligned_cols=93 Identities=9% Similarity=-0.010 Sum_probs=55.8
Q ss_pred cCeEEEEecCCCCh--hhHhhhhcccCCCCCCcEEEEEc-CChhHHhhc-CCCceEeCCCCChHHHHHHHHHhhcCCCCC
Q 047158 20 HRRVFVVLDNLDHI--DQLKPLAGENKWFGSGSRIIITN-RNEHLLKVF-EVDGVCTVPRLCLGKSFQLFSWHAFRKDKP 95 (212)
Q Consensus 20 ~kr~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~iivTt-R~~~~~~~~-~~~~~~~l~~l~~~~a~~Ll~~~~~~~~~~ 95 (212)
+++-++|+|+++.. ...+.|+..+......+.+|++| +...+...+ .....+++.+++.++....+...+-.....
T Consensus 126 ~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kLl~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi~ 205 (620)
T PRK14954 126 GRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKIPATIASRCQRFNFKRIPLDEIQSQLQMICRAEGIQ 205 (620)
T ss_pred CCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHHHHhhceEEecCCCCHHHHHHHHHHHHHHcCCC
Confidence 44557899999754 34666766665544455555544 433333332 235679999999999887777654321111
Q ss_pred ChhHHHHHHHHHHHhCCCC
Q 047158 96 PQRFMKLSRELLRCAEGLP 114 (212)
Q Consensus 96 ~~~~~~~~~~i~~~c~glP 114 (212)
-..+.+..+++.++|-.
T Consensus 206 --I~~eal~~La~~s~Gdl 222 (620)
T PRK14954 206 --IDADALQLIARKAQGSM 222 (620)
T ss_pred --CCHHHHHHHHHHhCCCH
Confidence 12345667778887743
No 63
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=86.03 E-value=2.9 Score=33.91 Aligned_cols=93 Identities=13% Similarity=0.124 Sum_probs=54.7
Q ss_pred eEEEEecCCCCh--hhHhhhhcccCCCCCCcEEEEEcCCh-hHHhhc-CCCceEeCCCCChHHHHHHHHHhhcCCCCCCh
Q 047158 22 RVFVVLDNLDHI--DQLKPLAGENKWFGSGSRIIITNRNE-HLLKVF-EVDGVCTVPRLCLGKSFQLFSWHAFRKDKPPQ 97 (212)
Q Consensus 22 r~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~iivTtR~~-~~~~~~-~~~~~~~l~~l~~~~a~~Ll~~~~~~~~~~~~ 97 (212)
+-++++|+++.. +....+...+....+.+.+|+++... .+...+ .....+++.+++.++....+...+......
T Consensus 103 ~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~~~~~l~~~ei~~~l~~~~~~~~~~-- 180 (319)
T PRK00440 103 FKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCAVFRFSPLKKEAVAERLRYIAENEGIE-- 180 (319)
T ss_pred ceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhheeeeCCCCHHHHHHHHHHHHHHcCCC--
Confidence 558999999753 33444544444444456677766432 121111 123468999999999888888766432211
Q ss_pred hHHHHHHHHHHHhCCCCch
Q 047158 98 RFMKLSRELLRCAEGLPLE 116 (212)
Q Consensus 98 ~~~~~~~~i~~~c~glPLa 116 (212)
-.+..+..+++.++|-+--
T Consensus 181 i~~~al~~l~~~~~gd~r~ 199 (319)
T PRK00440 181 ITDDALEAIYYVSEGDMRK 199 (319)
T ss_pred CCHHHHHHHHHHcCCCHHH
Confidence 1234567778888876543
No 64
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=85.96 E-value=7.4 Score=32.57 Aligned_cols=91 Identities=15% Similarity=0.214 Sum_probs=52.0
Q ss_pred CeEEEEecCCCChh----------------hHhhhhcccCC--CCCCcEEEEEcCChhHHhhc-----CCCceEeCCCCC
Q 047158 21 RRVFVVLDNLDHID----------------QLKPLAGENKW--FGSGSRIIITNRNEHLLKVF-----EVDGVCTVPRLC 77 (212)
Q Consensus 21 kr~LlvlDdv~~~~----------------~~~~l~~~~~~--~~~gs~iivTtR~~~~~~~~-----~~~~~~~l~~l~ 77 (212)
...+|++|+++... .+..+...+.. ...+..||.||......... .....+.++..+
T Consensus 215 ~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~ 294 (364)
T TIGR01242 215 APSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPD 294 (364)
T ss_pred CCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcC
Confidence 46799999997531 12223222221 12356788888754322111 124578999999
Q ss_pred hHHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCCC
Q 047158 78 LGKSFQLFSWHAFRKDKPPQRFMKLSRELLRCAEGLP 114 (212)
Q Consensus 78 ~~~a~~Ll~~~~~~~~~~~~~~~~~~~~i~~~c~glP 114 (212)
.++..++|..+..+...... .....+++.+.|+.
T Consensus 295 ~~~r~~Il~~~~~~~~l~~~---~~~~~la~~t~g~s 328 (364)
T TIGR01242 295 FEGRLEILKIHTRKMKLAED---VDLEAIAKMTEGAS 328 (364)
T ss_pred HHHHHHHHHHHHhcCCCCcc---CCHHHHHHHcCCCC
Confidence 99999999887644322211 01345566666654
No 65
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=85.61 E-value=5.9 Score=36.40 Aligned_cols=93 Identities=5% Similarity=-0.002 Sum_probs=55.5
Q ss_pred cCeEEEEecCCCC--hhhHhhhhcccCCCCCCcEEEEEc-CChhHHhhc-CCCceEeCCCCChHHHHHHHHHhhcCCCCC
Q 047158 20 HRRVFVVLDNLDH--IDQLKPLAGENKWFGSGSRIIITN-RNEHLLKVF-EVDGVCTVPRLCLGKSFQLFSWHAFRKDKP 95 (212)
Q Consensus 20 ~kr~LlvlDdv~~--~~~~~~l~~~~~~~~~gs~iivTt-R~~~~~~~~-~~~~~~~l~~l~~~~a~~Ll~~~~~~~~~~ 95 (212)
+++-++|+|+++. ...+.+|+..+......+.+|++| +...+...+ .-...+++.+++.++-.+.+...+-.....
T Consensus 117 g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI~ 196 (725)
T PRK07133 117 SKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPLTILSRVQRFNFRRISEDEIVSRLEFILEKENIS 196 (725)
T ss_pred CCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhHHHHhhceeEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 4566889999974 345666666555444455545444 433333222 224579999999999888887654222111
Q ss_pred ChhHHHHHHHHHHHhCCCC
Q 047158 96 PQRFMKLSRELLRCAEGLP 114 (212)
Q Consensus 96 ~~~~~~~~~~i~~~c~glP 114 (212)
.....+..+++.++|-+
T Consensus 197 --id~eAl~~LA~lS~Gsl 213 (725)
T PRK07133 197 --YEKNALKLIAKLSSGSL 213 (725)
T ss_pred --CCHHHHHHHHHHcCCCH
Confidence 11334667778887755
No 66
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=85.58 E-value=4.9 Score=35.05 Aligned_cols=91 Identities=9% Similarity=-0.019 Sum_probs=53.5
Q ss_pred cCeEEEEecCCCCh--hhHhhhhcccCCCCCCcEEEEEcCCh-hHHhhc-CCCceEeCCCCChHHHHHHHHHhhcCCCCC
Q 047158 20 HRRVFVVLDNLDHI--DQLKPLAGENKWFGSGSRIIITNRNE-HLLKVF-EVDGVCTVPRLCLGKSFQLFSWHAFRKDKP 95 (212)
Q Consensus 20 ~kr~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~iivTtR~~-~~~~~~-~~~~~~~l~~l~~~~a~~Ll~~~~~~~~~~ 95 (212)
+++-++|+|+++.. ...+.|+..+........+|++|.+. .+...+ .....+.+.+++.++-...+...+......
T Consensus 116 ~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Ilattn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi~ 195 (472)
T PRK14962 116 GKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGIE 195 (472)
T ss_pred CCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEEEeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCCC
Confidence 45669999999754 34566666555433445444444432 232222 234578999999999888888766332211
Q ss_pred ChhHHHHHHHHHHHhCC
Q 047158 96 PQRFMKLSRELLRCAEG 112 (212)
Q Consensus 96 ~~~~~~~~~~i~~~c~g 112 (212)
-.+++...|++.++|
T Consensus 196 --i~~eal~~Ia~~s~G 210 (472)
T PRK14962 196 --IDREALSFIAKRASG 210 (472)
T ss_pred --CCHHHHHHHHHHhCC
Confidence 113445667766654
No 67
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=85.47 E-value=5.5 Score=35.32 Aligned_cols=94 Identities=9% Similarity=-0.007 Sum_probs=58.7
Q ss_pred cCeEEEEecCCCCh--hhHhhhhcccCCCCCCcEEEEEcCChhH-Hhhc-CCCceEeCCCCChHHHHHHHHHhhcCCCCC
Q 047158 20 HRRVFVVLDNLDHI--DQLKPLAGENKWFGSGSRIIITNRNEHL-LKVF-EVDGVCTVPRLCLGKSFQLFSWHAFRKDKP 95 (212)
Q Consensus 20 ~kr~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~iivTtR~~~~-~~~~-~~~~~~~l~~l~~~~a~~Ll~~~~~~~~~~ 95 (212)
+++-++|+|+++.. +..++|+..+....+.+.+|++|.+..- ...+ .-...+++.+++.++..+.+...+-.....
T Consensus 116 ~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~ 195 (535)
T PRK08451 116 ARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGVS 195 (535)
T ss_pred CCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence 44568899999753 4466666655554556777777765422 1111 124578999999999888887655332211
Q ss_pred ChhHHHHHHHHHHHhCCCCc
Q 047158 96 PQRFMKLSRELLRCAEGLPL 115 (212)
Q Consensus 96 ~~~~~~~~~~i~~~c~glPL 115 (212)
-....+..|++.++|.+-
T Consensus 196 --i~~~Al~~Ia~~s~GdlR 213 (535)
T PRK08451 196 --YEPEALEILARSGNGSLR 213 (535)
T ss_pred --CCHHHHHHHHHHcCCcHH
Confidence 123456778888888663
No 68
>PRK06620 hypothetical protein; Validated
Probab=85.29 E-value=2.9 Score=32.26 Aligned_cols=67 Identities=6% Similarity=-0.068 Sum_probs=39.9
Q ss_pred eEEEEecCCCChhh--HhhhhcccCCCCCCcEEEEEcCChhH-------HhhcCCCceEeCCCCChHHHHHHHHHhhc
Q 047158 22 RVFVVLDNLDHIDQ--LKPLAGENKWFGSGSRIIITNRNEHL-------LKVFEVDGVCTVPRLCLGKSFQLFSWHAF 90 (212)
Q Consensus 22 r~LlvlDdv~~~~~--~~~l~~~~~~~~~gs~iivTtR~~~~-------~~~~~~~~~~~l~~l~~~~a~~Ll~~~~~ 90 (212)
.-++++||+....+ +-.+...+. ..|..+|+|++.... ...+...-++++++++.++-..++.+.+.
T Consensus 86 ~d~lliDdi~~~~~~~lf~l~N~~~--e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~ 161 (214)
T PRK06620 86 YNAFIIEDIENWQEPALLHIFNIIN--EKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFS 161 (214)
T ss_pred CCEEEEeccccchHHHHHHHHHHHH--hcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHH
Confidence 34788899974322 222211111 246679999874432 22223455789999998888888876653
No 69
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=85.15 E-value=3.4 Score=36.45 Aligned_cols=95 Identities=13% Similarity=-0.029 Sum_probs=55.9
Q ss_pred cCeEEEEecCCCC--hhhHhhhhcccCCCCCCcEEEEEcCChh-HHhhc-CCCceEeCCCCChHHHHHHHHHhhcCCCCC
Q 047158 20 HRRVFVVLDNLDH--IDQLKPLAGENKWFGSGSRIIITNRNEH-LLKVF-EVDGVCTVPRLCLGKSFQLFSWHAFRKDKP 95 (212)
Q Consensus 20 ~kr~LlvlDdv~~--~~~~~~l~~~~~~~~~gs~iivTtR~~~-~~~~~-~~~~~~~l~~l~~~~a~~Ll~~~~~~~~~~ 95 (212)
++.-++|+|+|+. ....++++..+....+.+++|++|.+.. +...+ .-...+++.+++.++-...+...+-.....
T Consensus 118 ~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlattd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~ 197 (509)
T PRK14958 118 GRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVE 197 (509)
T ss_pred CCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCC
Confidence 4556889999985 3456666666555555676776664432 22121 123468899999988777665554222111
Q ss_pred ChhHHHHHHHHHHHhCCCCch
Q 047158 96 PQRFMKLSRELLRCAEGLPLE 116 (212)
Q Consensus 96 ~~~~~~~~~~i~~~c~glPLa 116 (212)
-.......|++.++|-+-.
T Consensus 198 --~~~~al~~ia~~s~GslR~ 216 (509)
T PRK14958 198 --FENAALDLLARAANGSVRD 216 (509)
T ss_pred --CCHHHHHHHHHHcCCcHHH
Confidence 1133456677777776543
No 70
>PRK04132 replication factor C small subunit; Provisional
Probab=84.52 E-value=10 Score=35.56 Aligned_cols=93 Identities=16% Similarity=0.104 Sum_probs=60.0
Q ss_pred eEEEEecCCCCh--hhHhhhhcccCCCCCCcEEEEEcCChhH-Hhhc-CCCceEeCCCCChHHHHHHHHHhhcCCCCCCh
Q 047158 22 RVFVVLDNLDHI--DQLKPLAGENKWFGSGSRIIITNRNEHL-LKVF-EVDGVCTVPRLCLGKSFQLFSWHAFRKDKPPQ 97 (212)
Q Consensus 22 r~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~iivTtR~~~~-~~~~-~~~~~~~l~~l~~~~a~~Ll~~~~~~~~~~~~ 97 (212)
.-++|+|+++.. .....|...+......+.+|.++.+..- ...+ .-...+.+.+++.++-.+.+.+.+-.....
T Consensus 631 ~KVvIIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~-- 708 (846)
T PRK04132 631 FKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLE-- 708 (846)
T ss_pred CEEEEEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCC--
Confidence 469999999964 3566666666554556777777665432 2222 124578999999999888887665321111
Q ss_pred hHHHHHHHHHHHhCCCCch
Q 047158 98 RFMKLSRELLRCAEGLPLE 116 (212)
Q Consensus 98 ~~~~~~~~i~~~c~glPLa 116 (212)
-..+....|++.++|-+-.
T Consensus 709 i~~e~L~~Ia~~s~GDlR~ 727 (846)
T PRK04132 709 LTEEGLQAILYIAEGDMRR 727 (846)
T ss_pred CCHHHHHHHHHHcCCCHHH
Confidence 1134567888888887754
No 71
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=84.24 E-value=5.2 Score=35.97 Aligned_cols=93 Identities=9% Similarity=-0.051 Sum_probs=55.9
Q ss_pred CeEEEEecCCCC--hhhHhhhhcccCCCCCCcEEEEEcCCh-hHHhh-cCCCceEeCCCCChHHHHHHHHHhhcCCCCCC
Q 047158 21 RRVFVVLDNLDH--IDQLKPLAGENKWFGSGSRIIITNRNE-HLLKV-FEVDGVCTVPRLCLGKSFQLFSWHAFRKDKPP 96 (212)
Q Consensus 21 kr~LlvlDdv~~--~~~~~~l~~~~~~~~~gs~iivTtR~~-~~~~~-~~~~~~~~l~~l~~~~a~~Ll~~~~~~~~~~~ 96 (212)
++-++|+|+++. ...+..|+..+......+.+|++|.+. .+... ..-...+++.+++.++....+...+.......
T Consensus 119 ~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl~TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~I 198 (605)
T PRK05896 119 KYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIPLTIISRCQRYNFKKLNNSELQELLKSIAKKEKIKI 198 (605)
T ss_pred CcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhhHHHHhhhhhcccCCCCHHHHHHHHHHHHHHcCCCC
Confidence 334699999975 345666666555444455555555333 33222 12245789999999999888887653322111
Q ss_pred hhHHHHHHHHHHHhCCCCc
Q 047158 97 QRFMKLSRELLRCAEGLPL 115 (212)
Q Consensus 97 ~~~~~~~~~i~~~c~glPL 115 (212)
....+..+++.++|-+-
T Consensus 199 --s~eal~~La~lS~GdlR 215 (605)
T PRK05896 199 --EDNAIDKIADLADGSLR 215 (605)
T ss_pred --CHHHHHHHHHHcCCcHH
Confidence 13446678888888554
No 72
>PF14516 AAA_35: AAA-like domain
Probab=82.96 E-value=6.7 Score=32.47 Aligned_cols=43 Identities=12% Similarity=0.110 Sum_probs=33.0
Q ss_pred CceEeCCCCChHHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCCCch
Q 047158 68 DGVCTVPRLCLGKSFQLFSWHAFRKDKPPQRFMKLSRELLRCAEGLPLE 116 (212)
Q Consensus 68 ~~~~~l~~l~~~~a~~Ll~~~~~~~~~~~~~~~~~~~~i~~~c~glPLa 116 (212)
...+.|++++.+|..+|+..+... .. ....++|...+||+|.-
T Consensus 193 g~~i~L~~Ft~~ev~~L~~~~~~~---~~---~~~~~~l~~~tgGhP~L 235 (331)
T PF14516_consen 193 GQPIELPDFTPEEVQELAQRYGLE---FS---QEQLEQLMDWTGGHPYL 235 (331)
T ss_pred ccceeCCCCCHHHHHHHHHhhhcc---CC---HHHHHHHHHHHCCCHHH
Confidence 457889999999999999876422 12 12278899999999976
No 73
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=82.95 E-value=0.95 Score=34.81 Aligned_cols=45 Identities=29% Similarity=0.336 Sum_probs=27.8
Q ss_pred CeEEEEecCCCC---hhhHhhhhcccCCCCCCcEEEEEcCChhHHhhc
Q 047158 21 RRVFVVLDNLDH---IDQLKPLAGENKWFGSGSRIIITNRNEHLLKVF 65 (212)
Q Consensus 21 kr~LlvlDdv~~---~~~~~~l~~~~~~~~~gs~iivTtR~~~~~~~~ 65 (212)
..-++||||++. ......+...+....+++.+||||.++.+....
T Consensus 158 ~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~~~Q~ii~Th~~~~~~~a 205 (220)
T PF02463_consen 158 PSPFLILDEVDAALDEQNRKRLADLLKELSKQSQFIITTHNPEMFEDA 205 (220)
T ss_dssp --SEEEEESTTTTS-HHHHHHHHHHHHHHTTTSEEEEE-S-HHHHTT-
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 345899999984 333444444444445678899999998887764
No 74
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=82.58 E-value=12 Score=33.63 Aligned_cols=93 Identities=12% Similarity=0.008 Sum_probs=56.1
Q ss_pred cCeEEEEecCCCC--hhhHhhhhcccCCCCCCcEEEEEc-CChhHHhhc-CCCceEeCCCCChHHHHHHHHHhhcCCCCC
Q 047158 20 HRRVFVVLDNLDH--IDQLKPLAGENKWFGSGSRIIITN-RNEHLLKVF-EVDGVCTVPRLCLGKSFQLFSWHAFRKDKP 95 (212)
Q Consensus 20 ~kr~LlvlDdv~~--~~~~~~l~~~~~~~~~gs~iivTt-R~~~~~~~~-~~~~~~~l~~l~~~~a~~Ll~~~~~~~~~~ 95 (212)
+++-++|+|++.. ....+.|+..+......+.+|++| ....+...+ .-...+++.+++.++..+.+...+......
T Consensus 117 ~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~ 196 (584)
T PRK14952 117 SRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGVV 196 (584)
T ss_pred CCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHhhHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCC
Confidence 4556889999974 445667666665544555555555 433333332 224679999999999888887655332211
Q ss_pred ChhHHHHHHHHHHHhCCCC
Q 047158 96 PQRFMKLSRELLRCAEGLP 114 (212)
Q Consensus 96 ~~~~~~~~~~i~~~c~glP 114 (212)
. ....+..|++..+|-+
T Consensus 197 i--~~~al~~Ia~~s~Gdl 213 (584)
T PRK14952 197 V--DDAVYPLVIRAGGGSP 213 (584)
T ss_pred C--CHHHHHHHHHHcCCCH
Confidence 1 1234556677777755
No 75
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=82.15 E-value=4.2 Score=36.03 Aligned_cols=94 Identities=9% Similarity=0.001 Sum_probs=56.8
Q ss_pred cCeEEEEecCCCChh--hHhhhhcccCCCCCCcEEEEEcCChh-HHhhc-CCCceEeCCCCChHHHHHHHHHhhcCCCCC
Q 047158 20 HRRVFVVLDNLDHID--QLKPLAGENKWFGSGSRIIITNRNEH-LLKVF-EVDGVCTVPRLCLGKSFQLFSWHAFRKDKP 95 (212)
Q Consensus 20 ~kr~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~iivTtR~~~-~~~~~-~~~~~~~l~~l~~~~a~~Ll~~~~~~~~~~ 95 (212)
+++-++|+|+++... ..+.|+..+......+.+|++|.+.. +...+ .-...+++.+++.++-.+.+....-.....
T Consensus 118 ~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi~ 197 (527)
T PRK14969 118 GRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENIP 197 (527)
T ss_pred CCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCC
Confidence 456689999998543 46666666655445566666664432 22111 113468899999999888777655322111
Q ss_pred ChhHHHHHHHHHHHhCCCCc
Q 047158 96 PQRFMKLSRELLRCAEGLPL 115 (212)
Q Consensus 96 ~~~~~~~~~~i~~~c~glPL 115 (212)
.....+..|++.++|.+-
T Consensus 198 --~~~~al~~la~~s~Gslr 215 (527)
T PRK14969 198 --FDATALQLLARAAAGSMR 215 (527)
T ss_pred --CCHHHHHHHHHHcCCCHH
Confidence 123455677888888664
No 76
>smart00346 HTH_ICLR helix_turn_helix isocitrate lyase regulation.
Probab=81.51 E-value=8.2 Score=24.88 Aligned_cols=64 Identities=11% Similarity=0.119 Sum_probs=43.9
Q ss_pred HHhhhhccCCCCCHHHHHHhhhhcCCcchhhHHHHhhccCceecC-CCcEEecHHHHHHHHHHHh
Q 047158 146 VFMDIAHLFVGMDKDYVLKILQGCGFSSEIVFFVLTQRCLIVIDE-DNRLKMHDLIRDMKEKLFA 209 (212)
Q Consensus 146 ~~~~la~f~~~~~~~~l~~~~~~~~~~~~~~l~~L~~~sll~~~~-~~~~~mH~lv~~~a~~~~~ 209 (212)
.+.+++.-+.+++...+........-.....++.|.+.+++.... ++.|++-.-+.+++.....
T Consensus 10 Il~~l~~~~~~~t~~~ia~~l~i~~~tv~r~l~~L~~~g~l~~~~~~~~y~l~~~~~~~~~~~~~ 74 (91)
T smart00346 10 VLRALAEEPGGLTLAELAERLGLSKSTAHRLLNTLQELGYVEQDGQNGRYRLGPKVLELGQSYLS 74 (91)
T ss_pred HHHHHHhCCCCcCHHHHHHHhCCCHHHHHHHHHHHHHCCCeeecCCCCceeecHHHHHHHHHHHh
Confidence 344444444457777777766554444566799999999999864 5679888877777766543
No 77
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=81.17 E-value=4.9 Score=34.85 Aligned_cols=93 Identities=4% Similarity=0.021 Sum_probs=51.5
Q ss_pred eEEEEecCCCChh---h-HhhhhcccCC-CCCCcEEEEEcCChh---------HHhhcCCCceEeCCCCChHHHHHHHHH
Q 047158 22 RVFVVLDNLDHID---Q-LKPLAGENKW-FGSGSRIIITNRNEH---------LLKVFEVDGVCTVPRLCLGKSFQLFSW 87 (212)
Q Consensus 22 r~LlvlDdv~~~~---~-~~~l~~~~~~-~~~gs~iivTtR~~~---------~~~~~~~~~~~~l~~l~~~~a~~Ll~~ 87 (212)
.-+||+||+.... . .+.+...+.. ...|..||+||.... +...+...-++.+++++.++-.+++.+
T Consensus 207 ~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~ 286 (450)
T PRK14087 207 NDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKK 286 (450)
T ss_pred CCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHH
Confidence 3478899996321 1 1222222211 123456888875432 122223456788999999999999988
Q ss_pred hhcCCCCCChhHHHHHHHHHHHhCCCC
Q 047158 88 HAFRKDKPPQRFMKLSRELLRCAEGLP 114 (212)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~i~~~c~glP 114 (212)
.+-.......-.++...-|++.+.|.|
T Consensus 287 ~~~~~gl~~~l~~evl~~Ia~~~~gd~ 313 (450)
T PRK14087 287 EIKNQNIKQEVTEEAINFISNYYSDDV 313 (450)
T ss_pred HHHhcCCCCCCCHHHHHHHHHccCCCH
Confidence 773321100112345566676666655
No 78
>PRK04195 replication factor C large subunit; Provisional
Probab=80.86 E-value=6.7 Score=34.27 Aligned_cols=89 Identities=16% Similarity=0.101 Sum_probs=50.5
Q ss_pred CeEEEEecCCCChh------hHhhhhcccCCCCCCcEEEEEcCChhHH-h-hc-CCCceEeCCCCChHHHHHHHHHhhcC
Q 047158 21 RRVFVVLDNLDHID------QLKPLAGENKWFGSGSRIIITNRNEHLL-K-VF-EVDGVCTVPRLCLGKSFQLFSWHAFR 91 (212)
Q Consensus 21 kr~LlvlDdv~~~~------~~~~l~~~~~~~~~gs~iivTtR~~~~~-~-~~-~~~~~~~l~~l~~~~a~~Ll~~~~~~ 91 (212)
++-+||+|+++... .+..+...+. . .++.||+|+.+..-. . .+ .....+.+.+++..+....+...+..
T Consensus 98 ~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~-~-~~~~iIli~n~~~~~~~k~Lrsr~~~I~f~~~~~~~i~~~L~~i~~~ 175 (482)
T PRK04195 98 RRKLILLDEVDGIHGNEDRGGARAILELIK-K-AKQPIILTANDPYDPSLRELRNACLMIEFKRLSTRSIVPVLKRICRK 175 (482)
T ss_pred CCeEEEEecCcccccccchhHHHHHHHHHH-c-CCCCEEEeccCccccchhhHhccceEEEecCCCHHHHHHHHHHHHHH
Confidence 57799999998642 2444544333 2 234466666433211 1 11 23457889999999988888776633
Q ss_pred CCCCChhHHHHHHHHHHHhCCC
Q 047158 92 KDKPPQRFMKLSRELLRCAEGL 113 (212)
Q Consensus 92 ~~~~~~~~~~~~~~i~~~c~gl 113 (212)
..... ...+...|++.++|-
T Consensus 176 egi~i--~~eaL~~Ia~~s~GD 195 (482)
T PRK04195 176 EGIEC--DDEALKEIAERSGGD 195 (482)
T ss_pred cCCCC--CHHHHHHHHHHcCCC
Confidence 22211 123455666666653
No 79
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=80.10 E-value=13 Score=33.77 Aligned_cols=95 Identities=12% Similarity=0.010 Sum_probs=57.0
Q ss_pred cCeEEEEecCCCCh--hhHhhhhcccCCCCCCcEEEEEcCChh-HHhhc-CCCceEeCCCCChHHHHHHHHHhhcCCCCC
Q 047158 20 HRRVFVVLDNLDHI--DQLKPLAGENKWFGSGSRIIITNRNEH-LLKVF-EVDGVCTVPRLCLGKSFQLFSWHAFRKDKP 95 (212)
Q Consensus 20 ~kr~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~iivTtR~~~-~~~~~-~~~~~~~l~~l~~~~a~~Ll~~~~~~~~~~ 95 (212)
+++-++|+|+++.. ..++.|+..+......+.+|++|.+.. +...+ .-...+++..++.++....+.+.+......
T Consensus 120 ~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~llpTIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi~ 199 (620)
T PRK14948 120 ARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPTIISRCQRFDFRRIPLEAMVQHLSEIAEKESIE 199 (620)
T ss_pred CCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHhCCC
Confidence 44568899999854 456666665554444555555554432 22222 124568888999988888777665332211
Q ss_pred ChhHHHHHHHHHHHhCCCCch
Q 047158 96 PQRFMKLSRELLRCAEGLPLE 116 (212)
Q Consensus 96 ~~~~~~~~~~i~~~c~glPLa 116 (212)
. ....+..|++.++|.+..
T Consensus 200 i--s~~al~~La~~s~G~lr~ 218 (620)
T PRK14948 200 I--EPEALTLVAQRSQGGLRD 218 (620)
T ss_pred C--CHHHHHHHHHHcCCCHHH
Confidence 1 124467788888887643
No 80
>PRK05642 DNA replication initiation factor; Validated
Probab=80.10 E-value=7.6 Score=30.35 Aligned_cols=66 Identities=20% Similarity=0.198 Sum_probs=39.2
Q ss_pred EEEecCCCCh---hhHhh-hhcccCC-CCCCcEEEEEcCChhHHhh---------cCCCceEeCCCCChHHHHHHHHHhh
Q 047158 24 FVVLDNLDHI---DQLKP-LAGENKW-FGSGSRIIITNRNEHLLKV---------FEVDGVCTVPRLCLGKSFQLFSWHA 89 (212)
Q Consensus 24 LlvlDdv~~~---~~~~~-l~~~~~~-~~~gs~iivTtR~~~~~~~---------~~~~~~~~l~~l~~~~a~~Ll~~~~ 89 (212)
+||+||+... ..|+. +...+.. ..+|..+|+||+.....-. +....++++++++.++-.++++..+
T Consensus 100 ~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ka 179 (234)
T PRK05642 100 LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLRA 179 (234)
T ss_pred EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHHH
Confidence 6788999632 23322 3222221 1246678888865332111 1234678899999999999988555
No 81
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=79.82 E-value=8.7 Score=34.46 Aligned_cols=92 Identities=11% Similarity=0.052 Sum_probs=51.5
Q ss_pred CeEEEEecCCCCh--hhHhhhhcccCCCCCCcEEEEEcCC-hhHHhhc-CCCceEeCCCCChHHHHHHHHHhhcCCCCCC
Q 047158 21 RRVFVVLDNLDHI--DQLKPLAGENKWFGSGSRIIITNRN-EHLLKVF-EVDGVCTVPRLCLGKSFQLFSWHAFRKDKPP 96 (212)
Q Consensus 21 kr~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~iivTtR~-~~~~~~~-~~~~~~~l~~l~~~~a~~Ll~~~~~~~~~~~ 96 (212)
++-++|+|+++.. ...+.|+..+......+.+|++|.+ ..+...+ .-...+++.+++.++....+...+-.....
T Consensus 119 ~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~- 197 (576)
T PRK14965 119 RYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPITILSRCQRFDFRRIPLQKIVDRLRYIADQEGIS- 197 (576)
T ss_pred CceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhhHHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCCC-
Confidence 4457889999753 3466666555544456666655543 3333322 124467888999888877776544222111
Q ss_pred hhHHHHHHHHHHHhCCCC
Q 047158 97 QRFMKLSRELLRCAEGLP 114 (212)
Q Consensus 97 ~~~~~~~~~i~~~c~glP 114 (212)
-....+..|++.++|-.
T Consensus 198 -i~~~al~~la~~a~G~l 214 (576)
T PRK14965 198 -ISDAALALVARKGDGSM 214 (576)
T ss_pred -CCHHHHHHHHHHcCCCH
Confidence 11234455666666643
No 82
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=79.09 E-value=17 Score=31.85 Aligned_cols=94 Identities=7% Similarity=-0.040 Sum_probs=55.1
Q ss_pred cCeEEEEecCCCCh--hhHhhhhcccCCCCCCcEEEEEcCCh-hHHhhc-CCCceEeCCCCChHHHHHHHHHhhcCCCCC
Q 047158 20 HRRVFVVLDNLDHI--DQLKPLAGENKWFGSGSRIIITNRNE-HLLKVF-EVDGVCTVPRLCLGKSFQLFSWHAFRKDKP 95 (212)
Q Consensus 20 ~kr~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~iivTtR~~-~~~~~~-~~~~~~~l~~l~~~~a~~Ll~~~~~~~~~~ 95 (212)
+++-++|+|+++.. ...+.|...+....+...+|++|.+. .+...+ .-...+.+.+++.++-...+...+-.....
T Consensus 118 ~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi~ 197 (486)
T PRK14953 118 GKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIE 197 (486)
T ss_pred CCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence 45669999999754 34566665555444455555555332 322221 124478999999999888887655322211
Q ss_pred ChhHHHHHHHHHHHhCCCCc
Q 047158 96 PQRFMKLSRELLRCAEGLPL 115 (212)
Q Consensus 96 ~~~~~~~~~~i~~~c~glPL 115 (212)
-....+..+++.++|.+-
T Consensus 198 --id~~al~~La~~s~G~lr 215 (486)
T PRK14953 198 --YEEKALDLLAQASEGGMR 215 (486)
T ss_pred --CCHHHHHHHHHHcCCCHH
Confidence 123445667777777554
No 83
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=77.57 E-value=6.5 Score=29.37 Aligned_cols=53 Identities=17% Similarity=0.124 Sum_probs=32.2
Q ss_pred HHHHHHHHHHhccCe-EEEEecCCCChh-----hHhhhhcccCCCCCCcEEEEEcCChh
Q 047158 8 DRGLNMMSSRLLHRR-VFVVLDNLDHID-----QLKPLAGENKWFGSGSRIIITNRNEH 60 (212)
Q Consensus 8 ~~~~~~l~~~L~~kr-~LlvlDdv~~~~-----~~~~l~~~~~~~~~gs~iivTtR~~~ 60 (212)
++..+..++.+...+ =|+|||.+-..- ..+.+...+....++..||+|-|+..
T Consensus 83 ~~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p 141 (173)
T TIGR00708 83 KAAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCP 141 (173)
T ss_pred HHHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCC
Confidence 344556666666555 499999985322 12233333333445678999999874
No 84
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=77.54 E-value=20 Score=32.12 Aligned_cols=94 Identities=10% Similarity=0.004 Sum_probs=57.9
Q ss_pred cCeEEEEecCCCCh--hhHhhhhcccCCCCCCcEEEEEcCCh-hHHhhc-CCCceEeCCCCChHHHHHHHHHhhcCCCCC
Q 047158 20 HRRVFVVLDNLDHI--DQLKPLAGENKWFGSGSRIIITNRNE-HLLKVF-EVDGVCTVPRLCLGKSFQLFSWHAFRKDKP 95 (212)
Q Consensus 20 ~kr~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~iivTtR~~-~~~~~~-~~~~~~~l~~l~~~~a~~Ll~~~~~~~~~~ 95 (212)
+++-++|+|++... ..++.|+..+....+.+.+|.+|.+. .+...+ .-...+++.+++.++-.+.+...+......
T Consensus 118 ~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~~tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi~ 197 (563)
T PRK06647 118 SRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLPATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQIK 197 (563)
T ss_pred CCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhHHHHHHhceEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 45668999999754 45677776666555566666666443 232222 124468899999999888887665332211
Q ss_pred ChhHHHHHHHHHHHhCCCCc
Q 047158 96 PQRFMKLSRELLRCAEGLPL 115 (212)
Q Consensus 96 ~~~~~~~~~~i~~~c~glPL 115 (212)
-.+..+..|++.++|-+-
T Consensus 198 --id~eAl~lLa~~s~GdlR 215 (563)
T PRK06647 198 --YEDEALKWIAYKSTGSVR 215 (563)
T ss_pred --CCHHHHHHHHHHcCCCHH
Confidence 123455667777777653
No 85
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=77.32 E-value=7.7 Score=35.09 Aligned_cols=81 Identities=14% Similarity=-0.058 Sum_probs=49.6
Q ss_pred HHHHHHHHhccCeEEEEecCCCCh--hhHhhhhcccCCCCCCcEEEE--EcCChhHH-hhc-CCCceEeCCCCChHHHHH
Q 047158 10 GLNMMSSRLLHRRVFVVLDNLDHI--DQLKPLAGENKWFGSGSRIII--TNRNEHLL-KVF-EVDGVCTVPRLCLGKSFQ 83 (212)
Q Consensus 10 ~~~~l~~~L~~kr~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~iiv--TtR~~~~~-~~~-~~~~~~~l~~l~~~~a~~ 83 (212)
.+..+.+.+.+++++++-|+.|.. ..|+.+...+....+...|++ ||++.... ..+ .-...+.+.+++.++.++
T Consensus 281 ~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~ 360 (615)
T TIGR02903 281 LQNKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIAL 360 (615)
T ss_pred HHHHHHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHH
Confidence 456777788888888887666543 235555544444444444555 56644321 111 112357889999999999
Q ss_pred HHHHhhc
Q 047158 84 LFSWHAF 90 (212)
Q Consensus 84 Ll~~~~~ 90 (212)
++.+.+.
T Consensus 361 Il~~~a~ 367 (615)
T TIGR02903 361 IVLNAAE 367 (615)
T ss_pred HHHHHHH
Confidence 9998764
No 86
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=76.99 E-value=6.2 Score=32.36 Aligned_cols=88 Identities=13% Similarity=0.096 Sum_probs=54.5
Q ss_pred EEEEecCCCC--hhhHhhhhcccCCCCCCcEEEEEcCChh-HHhhc-CCCceEeCCCCChHHHHHHHHHhhcCCCCCChh
Q 047158 23 VFVVLDNLDH--IDQLKPLAGENKWFGSGSRIIITNRNEH-LLKVF-EVDGVCTVPRLCLGKSFQLFSWHAFRKDKPPQR 98 (212)
Q Consensus 23 ~LlvlDdv~~--~~~~~~l~~~~~~~~~gs~iivTtR~~~-~~~~~-~~~~~~~l~~l~~~~a~~Ll~~~~~~~~~~~~~ 98 (212)
=.+|||+++. .+.|.++..........++.|+.+..-. +...+ .--..+..++|..++...-|...+-.... .-
T Consensus 131 KiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~SRC~KfrFk~L~d~~iv~rL~~Ia~~E~v--~~ 208 (346)
T KOG0989|consen 131 KIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVSRCQKFRFKKLKDEDIVDRLEKIASKEGV--DI 208 (346)
T ss_pred eEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHHhhHHHhcCCCcchHHHHHHHHHHHHHhCC--CC
Confidence 3688999986 4568888776665555665555443222 21111 11234788999999999888877733222 22
Q ss_pred HHHHHHHHHHHhCC
Q 047158 99 FMKLSRELLRCAEG 112 (212)
Q Consensus 99 ~~~~~~~i~~~c~g 112 (212)
...+.+.|++.++|
T Consensus 209 d~~al~~I~~~S~G 222 (346)
T KOG0989|consen 209 DDDALKLIAKISDG 222 (346)
T ss_pred CHHHHHHHHHHcCC
Confidence 34456777777776
No 87
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=76.09 E-value=8.6 Score=29.66 Aligned_cols=68 Identities=13% Similarity=0.111 Sum_probs=36.1
Q ss_pred eEEEEecCCCChh--hHhhhhcccCC-CCCCc-EEEEEcCChhHHh--------hcCCCceEeCCCCChHHHHHHHHHhh
Q 047158 22 RVFVVLDNLDHID--QLKPLAGENKW-FGSGS-RIIITNRNEHLLK--------VFEVDGVCTVPRLCLGKSFQLFSWHA 89 (212)
Q Consensus 22 r~LlvlDdv~~~~--~~~~l~~~~~~-~~~gs-~iivTtR~~~~~~--------~~~~~~~~~l~~l~~~~a~~Ll~~~~ 89 (212)
.-+||+||++... ..+.+...+.. ...+. .+|+|++...... .+.....+.+++++.++-..++....
T Consensus 91 ~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~ 170 (227)
T PRK08903 91 AELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYELKPLSDADKIAALKAAA 170 (227)
T ss_pred CCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHHH
Confidence 3478899997432 22223222211 11233 3666666433211 11223578899999887767666543
No 88
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=75.90 E-value=14 Score=30.49 Aligned_cols=83 Identities=10% Similarity=0.061 Sum_probs=46.5
Q ss_pred EEEecCCCCh--hhHhhhhcccCCCCCCcEEEEEcCChhH-HhhcC-CCceEeCCCCChHHHHHHHHHhhcCCCCCChhH
Q 047158 24 FVVLDNLDHI--DQLKPLAGENKWFGSGSRIIITNRNEHL-LKVFE-VDGVCTVPRLCLGKSFQLFSWHAFRKDKPPQRF 99 (212)
Q Consensus 24 LlvlDdv~~~--~~~~~l~~~~~~~~~gs~iivTtR~~~~-~~~~~-~~~~~~l~~l~~~~a~~Ll~~~~~~~~~~~~~~ 99 (212)
.+|+|++... .....+...+.....++.+|++|.+... ...+. -...+.+.+++.++..+.+.... . . ..
T Consensus 116 V~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~~---~--~-~~ 189 (325)
T PRK08699 116 VILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRERG---V--A-EP 189 (325)
T ss_pred EEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhcC---C--C-cH
Confidence 4455888743 3334444333333345667778776543 22221 24568899999999988886531 1 1 11
Q ss_pred HHHHHHHHHHhCCCCch
Q 047158 100 MKLSRELLRCAEGLPLE 116 (212)
Q Consensus 100 ~~~~~~i~~~c~glPLa 116 (212)
. ..+..++|-|+.
T Consensus 190 ~----~~l~~~~g~p~~ 202 (325)
T PRK08699 190 E----ERLAFHSGAPLF 202 (325)
T ss_pred H----HHHHHhCCChhh
Confidence 1 113567888864
No 89
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=75.83 E-value=3 Score=32.31 Aligned_cols=69 Identities=13% Similarity=0.126 Sum_probs=37.4
Q ss_pred EEEEecCCCChh---hHh-hhhcccCC-CCCCcEEEEEcCChh---------HHhhcCCCceEeCCCCChHHHHHHHHHh
Q 047158 23 VFVVLDNLDHID---QLK-PLAGENKW-FGSGSRIIITNRNEH---------LLKVFEVDGVCTVPRLCLGKSFQLFSWH 88 (212)
Q Consensus 23 ~LlvlDdv~~~~---~~~-~l~~~~~~-~~~gs~iivTtR~~~---------~~~~~~~~~~~~l~~l~~~~a~~Ll~~~ 88 (212)
=+|++||+.... .|. .+...+.. ...|.+||+|++... +...+...-++++.+++.++-.+++.+.
T Consensus 99 DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~ 178 (219)
T PF00308_consen 99 DLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRILQKK 178 (219)
T ss_dssp SEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHHHHHH
T ss_pred CEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHHHHHH
Confidence 478899997432 121 12211111 124668999995432 2222234567899999999999999887
Q ss_pred hcC
Q 047158 89 AFR 91 (212)
Q Consensus 89 ~~~ 91 (212)
+-.
T Consensus 179 a~~ 181 (219)
T PF00308_consen 179 AKE 181 (219)
T ss_dssp HHH
T ss_pred HHH
Confidence 743
No 90
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=75.20 E-value=4.6 Score=30.67 Aligned_cols=53 Identities=19% Similarity=0.154 Sum_probs=32.7
Q ss_pred HHHHHHHHHHhccC-eEEEEecCCCChh-----hHhhhhcccCCCCCCcEEEEEcCChh
Q 047158 8 DRGLNMMSSRLLHR-RVFVVLDNLDHID-----QLKPLAGENKWFGSGSRIIITNRNEH 60 (212)
Q Consensus 8 ~~~~~~l~~~L~~k-r~LlvlDdv~~~~-----~~~~l~~~~~~~~~gs~iivTtR~~~ 60 (212)
.+..+..++.+... -=|+|||.+-..- ..+.+...+.....+..||+|-|+..
T Consensus 101 ~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~p 159 (191)
T PRK05986 101 REGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGAP 159 (191)
T ss_pred HHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 34455666666555 4599999995332 22333333333445678999999764
No 91
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=74.13 E-value=9 Score=28.75 Aligned_cols=52 Identities=15% Similarity=-0.017 Sum_probs=31.4
Q ss_pred HHHHHHHHHhccC-eEEEEecCCCChh-----hHhhhhcccCCCCCCcEEEEEcCChh
Q 047158 9 RGLNMMSSRLLHR-RVFVVLDNLDHID-----QLKPLAGENKWFGSGSRIIITNRNEH 60 (212)
Q Consensus 9 ~~~~~l~~~L~~k-r~LlvlDdv~~~~-----~~~~l~~~~~~~~~gs~iivTtR~~~ 60 (212)
+..+..++.+... --|+|||.+-..- ..+.+...+....++..||+|-|+..
T Consensus 102 ~~~~~a~~~l~~~~~dlvVLDEi~~Al~~gli~~eeVl~~L~~rp~~~evILTGR~~p 159 (178)
T PRK07414 102 ELWQYTQAVVDEGRYSLVVLDELSLAIQFGLIPETEVLEFLEKRPSHVDVILTGPEMP 159 (178)
T ss_pred HHHHHHHHHHhCCCCCEEEEehhHHHHHCCCccHHHHHHHHHhCCCCCEEEEECCCCC
Confidence 3445566666554 4599999985322 12333333333345678999999754
No 92
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=72.05 E-value=21 Score=32.31 Aligned_cols=68 Identities=12% Similarity=0.216 Sum_probs=40.9
Q ss_pred EEEecCCCCh---hhH-hhhhcccCC-CCCCcEEEEEcCCh---------hHHhhcCCCceEeCCCCChHHHHHHHHHhh
Q 047158 24 FVVLDNLDHI---DQL-KPLAGENKW-FGSGSRIIITNRNE---------HLLKVFEVDGVCTVPRLCLGKSFQLFSWHA 89 (212)
Q Consensus 24 LlvlDdv~~~---~~~-~~l~~~~~~-~~~gs~iivTtR~~---------~~~~~~~~~~~~~l~~l~~~~a~~Ll~~~~ 89 (212)
+||+||+... +.+ +.|...+.. ...|..||+||... .+...+...-++.+.+.+.+.-.++|.+.+
T Consensus 380 LLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka 459 (617)
T PRK14086 380 ILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKKA 459 (617)
T ss_pred EEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHHH
Confidence 7889999632 111 122221111 12355688888753 222223346678999999999999998776
Q ss_pred cC
Q 047158 90 FR 91 (212)
Q Consensus 90 ~~ 91 (212)
-.
T Consensus 460 ~~ 461 (617)
T PRK14086 460 VQ 461 (617)
T ss_pred Hh
Confidence 43
No 93
>TIGR01610 phage_O_Nterm phage replication protein O, N-terminal domain. This model represents the N-terminal region of the phage lambda replication protein O and homologous regions of other phage proteins.
Probab=71.07 E-value=12 Score=24.77 Aligned_cols=64 Identities=11% Similarity=0.015 Sum_probs=46.1
Q ss_pred HhhcCCCCchhhhHHhhhhc-------cCCCCCHHHHHHhhhhcCCcchhhHHHHhhccCceecC-CCcEEec
Q 047158 133 VSFDVLNDDEEKNVFMDIAH-------LFVGMDKDYVLKILQGCGFSSEIVFFVLTQRCLIVIDE-DNRLKMH 197 (212)
Q Consensus 133 ~s~~~L~~~~~~~~~~~la~-------f~~~~~~~~l~~~~~~~~~~~~~~l~~L~~~sll~~~~-~~~~~mH 197 (212)
+.+..+ ++....+++.++- ...+++...+..+.....-.....++.|.++++|.... .|.|.|.
T Consensus 18 l~~~~l-~~r~~~vLl~L~~~~~G~~~~~~~is~~eLa~~~g~sr~tVsr~L~~Le~~GlI~r~~~~~~~~~n 89 (95)
T TIGR01610 18 LPGADL-SGREFRVLLAIIRLTYGWNKKQDRVTATVIAELTGLSRTHVSDAIKSLARRRIIFRQGMMGIVGVN 89 (95)
T ss_pred HHhCCC-CHHHHHHHHHHHHHHhCccccCCccCHHHHHHHHCcCHHHHHHHHHHHHHCCCeeeecCCceeecC
Confidence 456677 7777788877763 12247788888877766656667899999999998763 3667765
No 94
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=70.78 E-value=8.9 Score=26.38 Aligned_cols=51 Identities=24% Similarity=0.349 Sum_probs=33.2
Q ss_pred chHHHHHHHHHHhccCeE-EEEecCCCCh-h--hHhhhhcccCCCCCCcEEEEEcCC
Q 047158 6 SIDRGLNMMSSRLLHRRV-FVVLDNLDHI-D--QLKPLAGENKWFGSGSRIIITNRN 58 (212)
Q Consensus 6 ~~~~~~~~l~~~L~~kr~-LlvlDdv~~~-~--~~~~l~~~~~~~~~gs~iivTtR~ 58 (212)
+.+++.+.+.+.+...+. +||+|+++.. . .++.+..... ..+.++|+..+.
T Consensus 71 ~~~~l~~~~~~~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 71 TSDELRSLLIDALDRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp -HHHHHHHHHHHHHHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred CHHHHHHHHHHHHHhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 456677888888877655 9999999875 2 2344432222 556778777654
No 95
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=69.39 E-value=30 Score=31.00 Aligned_cols=94 Identities=11% Similarity=0.058 Sum_probs=54.8
Q ss_pred cCeEEEEecCCCCh--hhHhhhhcccCCCCCCcEEEEEcCChh-HHhhc-CCCceEeCCCCChHHHHHHHHHhhcCCCCC
Q 047158 20 HRRVFVVLDNLDHI--DQLKPLAGENKWFGSGSRIIITNRNEH-LLKVF-EVDGVCTVPRLCLGKSFQLFSWHAFRKDKP 95 (212)
Q Consensus 20 ~kr~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~iivTtR~~~-~~~~~-~~~~~~~l~~l~~~~a~~Ll~~~~~~~~~~ 95 (212)
+++-++|+|+++.. ..+..|+..+........+|++|.+.+ +...+ .-...+++.+++.++..+.+...+-.....
T Consensus 118 ~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~ 197 (559)
T PRK05563 118 AKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIPATILSRCQRFDFKRISVEDIVERLKYILDKEGIE 197 (559)
T ss_pred CCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCcHHHHhHheEEecCCCCHHHHHHHHHHHHHHcCCC
Confidence 45668899999853 456777665554444555555553332 22221 123468889999999888887665322211
Q ss_pred ChhHHHHHHHHHHHhCCCCc
Q 047158 96 PQRFMKLSRELLRCAEGLPL 115 (212)
Q Consensus 96 ~~~~~~~~~~i~~~c~glPL 115 (212)
. ....+..|++.++|-+.
T Consensus 198 i--~~~al~~ia~~s~G~~R 215 (559)
T PRK05563 198 Y--EDEALRLIARAAEGGMR 215 (559)
T ss_pred C--CHHHHHHHHHHcCCCHH
Confidence 1 13445667777777554
No 96
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=69.35 E-value=15 Score=29.63 Aligned_cols=69 Identities=9% Similarity=0.069 Sum_probs=42.6
Q ss_pred eEEEEecCCCCh-----------hhHhhhhcccCCCCCCcEEEEEcCChhHHhhc--C------CCceEeCCCCChHHHH
Q 047158 22 RVFVVLDNLDHI-----------DQLKPLAGENKWFGSGSRIIITNRNEHLLKVF--E------VDGVCTVPRLCLGKSF 82 (212)
Q Consensus 22 r~LlvlDdv~~~-----------~~~~~l~~~~~~~~~gs~iivTtR~~~~~~~~--~------~~~~~~l~~l~~~~a~ 82 (212)
.-+|++|++... +.+..+...+.....+.+||.++.....-... . ....+.+++++.+|-.
T Consensus 122 ~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~ 201 (284)
T TIGR02880 122 GGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELL 201 (284)
T ss_pred CcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHH
Confidence 468899999632 22344555444444556677776533221111 1 1456899999999999
Q ss_pred HHHHHhhc
Q 047158 83 QLFSWHAF 90 (212)
Q Consensus 83 ~Ll~~~~~ 90 (212)
+++....-
T Consensus 202 ~I~~~~l~ 209 (284)
T TIGR02880 202 VIAGLMLK 209 (284)
T ss_pred HHHHHHHH
Confidence 99887763
No 97
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=69.22 E-value=17 Score=30.01 Aligned_cols=69 Identities=14% Similarity=0.118 Sum_probs=45.8
Q ss_pred cCeEEEEecCCCCh--hhHhhhhcccCCCCCCcEEEEEcCChhH-Hhhc-CCCceEeCCCCChHHHHHHHHHh
Q 047158 20 HRRVFVVLDNLDHI--DQLKPLAGENKWFGSGSRIIITNRNEHL-LKVF-EVDGVCTVPRLCLGKSFQLFSWH 88 (212)
Q Consensus 20 ~kr~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~iivTtR~~~~-~~~~-~~~~~~~l~~l~~~~a~~Ll~~~ 88 (212)
+++=.+|+|+++.. ...++|+..+.+...++.+|++|.+..- ...+ .-...+++.+++.++..+.+...
T Consensus 109 ~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ll~TIrSRc~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 109 SNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQILPTILSRCQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred cCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhCcHHHHhhceeeeCCCCCHHHHHHHHHHc
Confidence 34556888999754 3456666666655567777777765432 2222 23557999999999998888653
No 98
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=68.57 E-value=12 Score=28.47 Aligned_cols=51 Identities=24% Similarity=0.269 Sum_probs=31.7
Q ss_pred HHHHHHHHHhccCeE-EEEecCCCCh-----hhHhhhhcccCCCCCCcEEEEEcCCh
Q 047158 9 RGLNMMSSRLLHRRV-FVVLDNLDHI-----DQLKPLAGENKWFGSGSRIIITNRNE 59 (212)
Q Consensus 9 ~~~~~l~~~L~~kr~-LlvlDdv~~~-----~~~~~l~~~~~~~~~gs~iivTtR~~ 59 (212)
...+..++.+.+.+| |+|||.+.-. -.++.+...+........||+|-|+.
T Consensus 109 ~~w~~a~~~l~~~~ydlviLDEl~~al~~g~l~~eeV~~~l~~kP~~~~vIiTGr~a 165 (198)
T COG2109 109 AGWEHAKEALADGKYDLVILDELNYALRYGLLPLEEVVALLKARPEHTHVIITGRGA 165 (198)
T ss_pred HHHHHHHHHHhCCCCCEEEEehhhHHHHcCCCCHHHHHHHHhcCCCCcEEEEECCCC
Confidence 445566677777655 9999998522 22333333334334577899999864
No 99
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=67.20 E-value=14 Score=25.38 Aligned_cols=42 Identities=12% Similarity=0.150 Sum_probs=25.4
Q ss_pred ccCeEEEEecCCCCh-----hhHhhhhcccCCC---CCCcEEEEEcCChh
Q 047158 19 LHRRVFVVLDNLDHI-----DQLKPLAGENKWF---GSGSRIIITNRNEH 60 (212)
Q Consensus 19 ~~kr~LlvlDdv~~~-----~~~~~l~~~~~~~---~~gs~iivTtR~~~ 60 (212)
..+..++|+|+++.. ..+.......... ..+..||+||....
T Consensus 82 ~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 82 KAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred cCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 456789999999853 2233333333221 35778888887543
No 100
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=66.50 E-value=8.9 Score=28.63 Aligned_cols=50 Identities=18% Similarity=0.262 Sum_probs=28.0
Q ss_pred HHHHHHHHHHhccCe-EEEEecCCCC--------hhhHhhhhcccCCCCCCcEEEEEcCChh
Q 047158 8 DRGLNMMSSRLLHRR-VFVVLDNLDH--------IDQLKPLAGENKWFGSGSRIIITNRNEH 60 (212)
Q Consensus 8 ~~~~~~l~~~L~~kr-~LlvlDdv~~--------~~~~~~l~~~~~~~~~gs~iivTtR~~~ 60 (212)
++..+..++.+.... =|||||.+-. .+++-.++. .......||+|-|+..
T Consensus 82 ~~~~~~a~~~i~~~~~dlvILDEi~~a~~~gll~~~~v~~~l~---~rp~~~evVlTGR~~~ 140 (172)
T PF02572_consen 82 REGLEEAKEAISSGEYDLVILDEINYAVDYGLLSEEEVLDLLE---NRPESLEVVLTGRNAP 140 (172)
T ss_dssp HHHHHHHHHHTT-TT-SEEEEETHHHHHHTTSS-HHHHHHHHH---TS-TT-EEEEE-SS--
T ss_pred HHHHHHHHHHHhCCCCCEEEEcchHHHhHCCCccHHHHHHHHH---cCCCCeEEEEECCCCC
Confidence 344556666776554 4999999843 233333333 3346778999999874
No 101
>PF13730 HTH_36: Helix-turn-helix domain
Probab=66.48 E-value=8.4 Score=22.32 Aligned_cols=49 Identities=20% Similarity=0.188 Sum_probs=32.1
Q ss_pred CCCCchhhhHHhhhhccCC--C--C-CHHHHHHhhhhcCCcchhhHHHHhhccCc
Q 047158 137 VLNDDEEKNVFMDIAHLFV--G--M-DKDYVLKILQGCGFSSEIVFFVLTQRCLI 186 (212)
Q Consensus 137 ~L~~~~~~~~~~~la~f~~--~--~-~~~~l~~~~~~~~~~~~~~l~~L~~~sll 186 (212)
.| ++..+..+.++..+.. + + +.+.+........-....++++|.++|+|
T Consensus 2 ~L-s~~~~~v~~~l~~~~~~~~~~~pS~~~la~~~g~s~~Tv~~~i~~L~~~G~I 55 (55)
T PF13730_consen 2 NL-SPTAKLVYLYLASYANKNGGCFPSQETLAKDLGVSRRTVQRAIKELEEKGLI 55 (55)
T ss_pred CC-CHHHHHHHHHHHHhcCCCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCcCC
Confidence 46 7778888888877753 1 2 44555555444433445679999999875
No 102
>PRK08485 DNA polymerase III subunit delta'; Validated
Probab=63.32 E-value=67 Score=24.74 Aligned_cols=81 Identities=11% Similarity=0.066 Sum_probs=45.5
Q ss_pred cchHHHHHHHHHHhccCeEEEEecCCCC--hhhHhhhhcccCCCCCCcEEEEEcCChhH-HhhcC--C------------
Q 047158 5 ESIDRGLNMMSSRLLHRRVFVVLDNLDH--IDQLKPLAGENKWFGSGSRIIITNRNEHL-LKVFE--V------------ 67 (212)
Q Consensus 5 ~~~~~~~~~l~~~L~~kr~LlvlDdv~~--~~~~~~l~~~~~~~~~gs~iivTtR~~~~-~~~~~--~------------ 67 (212)
++..++.+.+.-.-..+++ |+++++. .....+++-.+-....++.+|+.|.++.. ...+- +
T Consensus 40 d~iReii~~~~~~~~~~k~--iI~~a~~l~~~A~NaLLK~LEEPp~~~~fiL~t~~~~~llpTI~SRc~~~~~~~~~~~~ 117 (206)
T PRK08485 40 EDAKEVIAEAYIAESEEKI--IVIAAPSYGIEAQNALLKILEEPPKNICFIIVAKSKNLLLPTIRSRLIIEKRKQKKPVK 117 (206)
T ss_pred HHHHHHHHHHhhCCCCcEE--EEEchHhhCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCchHHHhhheecccccccccc
Confidence 3333433333332233454 4667764 34566666655555556666666655432 22211 1
Q ss_pred CceEeCCCCChHHHHHHHHH
Q 047158 68 DGVCTVPRLCLGKSFQLFSW 87 (212)
Q Consensus 68 ~~~~~l~~l~~~~a~~Ll~~ 87 (212)
.-.+.+.+++.++..+.+..
T Consensus 118 ~l~l~l~~l~~~~i~~~L~~ 137 (206)
T PRK08485 118 PLDLDLKKLDLKDIYEFLKE 137 (206)
T ss_pred ccccccCCCCHHHHHHHHHH
Confidence 12367899999999999987
No 103
>TIGR01128 holA DNA polymerase III, delta subunit. subunit around DNA forming a DNA sliding clamp.
Probab=62.49 E-value=79 Score=25.28 Aligned_cols=95 Identities=15% Similarity=-0.005 Sum_probs=53.6
Q ss_pred cCeEEEEecCCCCh---hhHhhhhcccCCCCCCcEEEEEcCChh-------HHhhcCCCceEeCCCCChHHHHHHHHHhh
Q 047158 20 HRRVFVVLDNLDHI---DQLKPLAGENKWFGSGSRIIITNRNEH-------LLKVFEVDGVCTVPRLCLGKSFQLFSWHA 89 (212)
Q Consensus 20 ~kr~LlvlDdv~~~---~~~~~l~~~~~~~~~gs~iivTtR~~~-------~~~~~~~~~~~~l~~l~~~~a~~Ll~~~~ 89 (212)
+++-++|++++... ..++.+...+....++..+|+++-... ..........+...+++..+-...+...+
T Consensus 45 ~~~kliii~~~~~~~~~~~~~~L~~~l~~~~~~~~~i~~~~~~~~~~~~~k~~~~~~~~~~i~~~~~~~~~~~~~i~~~~ 124 (302)
T TIGR01128 45 SERRLVELRNPEGKPGAKGLKALEEYLANPPPDTLLLIEAPKLDKRKKLTKWLKALKNAQIVECKTPKEQELPRWIQARL 124 (302)
T ss_pred cCCeEEEEECCCCCCCHHHHHHHHHHHhcCCCCEEEEEecCCCCHhHHHHHHHHHhcCeeEEEecCCCHHHHHHHHHHHH
Confidence 45677889998652 346666665555445566666653211 12211234567788888888777776655
Q ss_pred cCCCCCChhHHHHHHHHHHHhCCCCch
Q 047158 90 FRKDKPPQRFMKLSRELLRCAEGLPLE 116 (212)
Q Consensus 90 ~~~~~~~~~~~~~~~~i~~~c~glPLa 116 (212)
-..... -..+++..+++.++|-...
T Consensus 125 ~~~g~~--i~~~a~~~l~~~~~~d~~~ 149 (302)
T TIGR01128 125 KKLGLR--IDPDAVQLLAELVEGNLLA 149 (302)
T ss_pred HHcCCC--CCHHHHHHHHHHhCcHHHH
Confidence 332211 1134456667777664443
No 104
>PRK10141 DNA-binding transcriptional repressor ArsR; Provisional
Probab=62.15 E-value=25 Score=24.43 Aligned_cols=72 Identities=11% Similarity=0.112 Sum_probs=42.7
Q ss_pred hhcCCCCchhhhHHhhhhccCCCCCHHHHHHhhhhcCCcchhhHHHHhhccCceecCCCc---EEecHHHHHHHHH
Q 047158 134 SFDVLNDDEEKNVFMDIAHLFVGMDKDYVLKILQGCGFSSEIVFFVLTQRCLIVIDEDNR---LKMHDLIRDMKEK 206 (212)
Q Consensus 134 s~~~L~~~~~~~~~~~la~f~~~~~~~~l~~~~~~~~~~~~~~l~~L~~~sll~~~~~~~---~~mH~lv~~~a~~ 206 (212)
.|..|.++...+.+..+.- .++.....+........-.....++.|.+.+||.....|+ |++.+-+.++...
T Consensus 9 ~fkaLadptRl~IL~~L~~-~~~~~v~ela~~l~lsqstvS~HL~~L~~AGLV~~~r~Gr~~~Y~l~~~~~~~~~~ 83 (117)
T PRK10141 9 LFKILSDETRLGIVLLLRE-SGELCVCDLCTALDQSQPKISRHLALLRESGLLLDRKQGKWVHYRLSPHIPAWAAK 83 (117)
T ss_pred HHHHhCCHHHHHHHHHHHH-cCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCceEEEEEcCEEEEEECchHHHHHHH
Confidence 4556623334445544432 1235555665554443333455799999999999887777 7877655554443
No 105
>COG3355 Predicted transcriptional regulator [Transcription]
Probab=60.84 E-value=20 Score=25.32 Aligned_cols=62 Identities=13% Similarity=0.096 Sum_probs=43.0
Q ss_pred HHHHHHHhhcCCCCchhhhHHhhhhccCCCCCHHHHHHhhhhcCCcchhhHHHHhhccCceecC
Q 047158 127 ILNKLRVSFDVLNDDEEKNVFMDIAHLFVGMDKDYVLKILQGCGFSSEIVFFVLTQRCLIVIDE 190 (212)
Q Consensus 127 v~~~l~~s~~~L~~~~~~~~~~~la~f~~~~~~~~l~~~~~~~~~~~~~~l~~L~~~sll~~~~ 190 (212)
+..++...| .| ++..-.+|..+----.+.+.+.+...+.-+.-.+...++.|++.|||+...
T Consensus 15 ~~dvl~c~~-GL-s~~Dv~v~~~LL~~~~~~tvdelae~lnr~rStv~rsl~~L~~~GlV~Rek 76 (126)
T COG3355 15 CEDVLKCVY-GL-SELDVEVYKALLEENGPLTVDELAEILNRSRSTVYRSLQNLLEAGLVEREK 76 (126)
T ss_pred HHHHHHHHh-CC-cHHHHHHHHHHHhhcCCcCHHHHHHHHCccHHHHHHHHHHHHHcCCeeeee
Confidence 444555444 56 666666655444323358999998888777777778899999999999654
No 106
>CHL00176 ftsH cell division protein; Validated
Probab=60.74 E-value=1.1e+02 Score=27.97 Aligned_cols=101 Identities=17% Similarity=0.144 Sum_probs=57.1
Q ss_pred HHHHHhccCeEEEEecCCCChh----------------hHhhhhcccCC--CCCCcEEEEEcCChhHHhh-c----CCCc
Q 047158 13 MMSSRLLHRRVFVVLDNLDHID----------------QLKPLAGENKW--FGSGSRIIITNRNEHLLKV-F----EVDG 69 (212)
Q Consensus 13 ~l~~~L~~kr~LlvlDdv~~~~----------------~~~~l~~~~~~--~~~gs~iivTtR~~~~~~~-~----~~~~ 69 (212)
.+.....+..++|++|+++... .+..++..+.. ...+-.||.||........ + ....
T Consensus 267 lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~LD~ALlRpGRFd~ 346 (638)
T CHL00176 267 LFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVDILDAALLRPGRFDR 346 (638)
T ss_pred HHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCchHhhhhhhhccccCce
Confidence 4444555678999999996431 13333322221 2234566767765443221 1 1246
Q ss_pred eEeCCCCChHHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCCCch
Q 047158 70 VCTVPRLCLGKSFQLFSWHAFRKDKPPQRFMKLSRELLRCAEGLPLE 116 (212)
Q Consensus 70 ~~~l~~l~~~~a~~Ll~~~~~~~~~~~~~~~~~~~~i~~~c~glPLa 116 (212)
.+.++..+.++-.++|+.++...... .......+++.+.|+.-+
T Consensus 347 ~I~v~lPd~~~R~~IL~~~l~~~~~~---~d~~l~~lA~~t~G~sga 390 (638)
T CHL00176 347 QITVSLPDREGRLDILKVHARNKKLS---PDVSLELIARRTPGFSGA 390 (638)
T ss_pred EEEECCCCHHHHHHHHHHHHhhcccc---hhHHHHHHHhcCCCCCHH
Confidence 78899999999999998776432211 122345566666665544
No 107
>PF12802 MarR_2: MarR family; PDB: 3ECO_B 2QWW_B 3KP6_B 3KP4_B 3KP2_A 3KP5_A 3KP3_B 3KP7_A 3NQO_B 3K0L_B ....
Probab=60.39 E-value=9.2 Score=22.62 Aligned_cols=51 Identities=12% Similarity=0.055 Sum_probs=38.8
Q ss_pred CchhhhHHhhhhccCCC-CCHHHHHHhhhhcCCcchhhHHHHhhccCceecC
Q 047158 140 DDEEKNVFMDIAHLFVG-MDKDYVLKILQGCGFSSEIVFFVLTQRCLIVIDE 190 (212)
Q Consensus 140 ~~~~~~~~~~la~f~~~-~~~~~l~~~~~~~~~~~~~~l~~L~~~sll~~~~ 190 (212)
++....++..+...+.+ .+...+...+....-.....++.|.++++|....
T Consensus 4 t~~q~~vL~~l~~~~~~~~t~~~la~~l~~~~~~vs~~v~~L~~~Glv~r~~ 55 (62)
T PF12802_consen 4 TPSQFRVLMALARHPGEELTQSELAERLGISKSTVSRIVKRLEKKGLVERER 55 (62)
T ss_dssp THHHHHHHHHHHHSTTSGEEHHHHHHHHTS-HHHHHHHHHHHHHTTSEEEEE
T ss_pred CHHHHHHHHHHHHCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEeC
Confidence 55666777778888775 7888888887766555666799999999998654
No 108
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=60.20 E-value=42 Score=22.76 Aligned_cols=22 Identities=9% Similarity=0.235 Sum_probs=13.8
Q ss_pred HHHHHHHhccC-eEEEEecCCCC
Q 047158 11 LNMMSSRLLHR-RVFVVLDNLDH 32 (212)
Q Consensus 11 ~~~l~~~L~~k-r~LlvlDdv~~ 32 (212)
...+.+.-... +.+|++||++.
T Consensus 47 ~~~~~~~~~~~~~~vl~iDe~d~ 69 (132)
T PF00004_consen 47 RDFFKKAKKSAKPCVLFIDEIDK 69 (132)
T ss_dssp HHHHHHHHHTSTSEEEEEETGGG
T ss_pred ccccccccccccceeeeeccchh
Confidence 33344433334 79999999974
No 109
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=59.36 E-value=68 Score=25.35 Aligned_cols=69 Identities=6% Similarity=0.010 Sum_probs=41.3
Q ss_pred eEEEEecCCCC----------hhhHhhhhcccCCCCCCcEEEEEcCChhHHh--h----c--CCCceEeCCCCChHHHHH
Q 047158 22 RVFVVLDNLDH----------IDQLKPLAGENKWFGSGSRIIITNRNEHLLK--V----F--EVDGVCTVPRLCLGKSFQ 83 (212)
Q Consensus 22 r~LlvlDdv~~----------~~~~~~l~~~~~~~~~gs~iivTtR~~~~~~--~----~--~~~~~~~l~~l~~~~a~~ 83 (212)
.-+|++|+++. .+..+.+............+|+++....... . + .....+.+++++.++-.+
T Consensus 106 ~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~ 185 (261)
T TIGR02881 106 GGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGYSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELME 185 (261)
T ss_pred CCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecCCcchhHHHHhcChHHHhccceEEEECCCCHHHHHH
Confidence 35889999974 2244555554443333445556554322211 0 0 123458899999999999
Q ss_pred HHHHhhc
Q 047158 84 LFSWHAF 90 (212)
Q Consensus 84 Ll~~~~~ 90 (212)
++.+.+.
T Consensus 186 Il~~~~~ 192 (261)
T TIGR02881 186 IAERMVK 192 (261)
T ss_pred HHHHHHH
Confidence 9987764
No 110
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=58.31 E-value=28 Score=29.57 Aligned_cols=69 Identities=14% Similarity=0.193 Sum_probs=38.7
Q ss_pred EEEEecCCCChh---h-HhhhhcccCC-CCCCcEEEEEcCCh-hHHhh--------cCCCceEeCCCCChHHHHHHHHHh
Q 047158 23 VFVVLDNLDHID---Q-LKPLAGENKW-FGSGSRIIITNRNE-HLLKV--------FEVDGVCTVPRLCLGKSFQLFSWH 88 (212)
Q Consensus 23 ~LlvlDdv~~~~---~-~~~l~~~~~~-~~~gs~iivTtR~~-~~~~~--------~~~~~~~~l~~l~~~~a~~Ll~~~ 88 (212)
-+|++||+.... . .+.+...+.. ...|..+|+||... ..... +.....+.+++.+.++-.+++...
T Consensus 201 dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~ 280 (405)
T TIGR00362 201 DLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQKK 280 (405)
T ss_pred CEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHHH
Confidence 378899997421 1 1122221111 11345688887542 22211 122346889999999999998877
Q ss_pred hcC
Q 047158 89 AFR 91 (212)
Q Consensus 89 ~~~ 91 (212)
+..
T Consensus 281 ~~~ 283 (405)
T TIGR00362 281 AEE 283 (405)
T ss_pred HHH
Confidence 643
No 111
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=58.13 E-value=79 Score=28.41 Aligned_cols=76 Identities=13% Similarity=0.197 Sum_probs=49.7
Q ss_pred HHHHHhccCeEEEEecCCCChhhHhhhhcc---------------cCCCCCCcEEEEEcCChhHHhhcC----CCceEeC
Q 047158 13 MMSSRLLHRRVFVVLDNLDHIDQLKPLAGE---------------NKWFGSGSRIIITNRNEHLLKVFE----VDGVCTV 73 (212)
Q Consensus 13 ~l~~~L~~kr~LlvlDdv~~~~~~~~l~~~---------------~~~~~~gs~iivTtR~~~~~~~~~----~~~~~~l 73 (212)
.+...-+..-..||+||+...-+|-.+.|. .|..|+.--|+-||....+...++ ....+.+
T Consensus 590 ~F~DAYkS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~V 669 (744)
T KOG0741|consen 590 IFEDAYKSPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHV 669 (744)
T ss_pred HHHHhhcCcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeec
Confidence 333444456678999999876665444431 222333445666888888888876 2567899
Q ss_pred CCCCh-HHHHHHHHHh
Q 047158 74 PRLCL-GKSFQLFSWH 88 (212)
Q Consensus 74 ~~l~~-~~a~~Ll~~~ 88 (212)
+.++. ++..+.+...
T Consensus 670 pnl~~~~~~~~vl~~~ 685 (744)
T KOG0741|consen 670 PNLTTGEQLLEVLEEL 685 (744)
T ss_pred CccCchHHHHHHHHHc
Confidence 99887 6777777654
No 112
>smart00419 HTH_CRP helix_turn_helix, cAMP Regulatory protein.
Probab=56.42 E-value=16 Score=20.06 Aligned_cols=40 Identities=13% Similarity=0.126 Sum_probs=26.2
Q ss_pred CCHHHHHHhhhhcCCcchhhHHHHhhccCceecCCCcEEec
Q 047158 157 MDKDYVLKILQGCGFSSEIVFFVLTQRCLIVIDEDNRLKMH 197 (212)
Q Consensus 157 ~~~~~l~~~~~~~~~~~~~~l~~L~~~sll~~~~~~~~~mH 197 (212)
.+...+........-.....++.|.+.+++.... +.|.+|
T Consensus 9 ~s~~~la~~l~~s~~tv~~~l~~L~~~g~l~~~~-~~~~i~ 48 (48)
T smart00419 9 LTRQEIAELLGLTRETVSRTLKRLEKEGLISREG-GRIVIL 48 (48)
T ss_pred cCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEeC-CEEEEC
Confidence 3444444444443333455799999999998764 778776
No 113
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=56.34 E-value=51 Score=28.54 Aligned_cols=70 Identities=13% Similarity=0.115 Sum_probs=40.2
Q ss_pred CeEEEEecCCCCh---hhH-hhhhcccCC-CCCCcEEEEEcC-ChhHHhh--------cCCCceEeCCCCChHHHHHHHH
Q 047158 21 RRVFVVLDNLDHI---DQL-KPLAGENKW-FGSGSRIIITNR-NEHLLKV--------FEVDGVCTVPRLCLGKSFQLFS 86 (212)
Q Consensus 21 kr~LlvlDdv~~~---~~~-~~l~~~~~~-~~~gs~iivTtR-~~~~~~~--------~~~~~~~~l~~l~~~~a~~Ll~ 86 (212)
+.-+|++||+... ... +.+...+.. ...|..||+||. .+.-... +....++.+++.+.+.-.+++.
T Consensus 194 ~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~ 273 (440)
T PRK14088 194 KVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIAR 273 (440)
T ss_pred cCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHH
Confidence 4458999999742 111 122211111 113446888874 3332222 1234578899999999999998
Q ss_pred Hhhc
Q 047158 87 WHAF 90 (212)
Q Consensus 87 ~~~~ 90 (212)
+.+.
T Consensus 274 ~~~~ 277 (440)
T PRK14088 274 KMLE 277 (440)
T ss_pred HHHH
Confidence 7764
No 114
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=55.09 E-value=10 Score=27.78 Aligned_cols=41 Identities=12% Similarity=0.138 Sum_probs=28.4
Q ss_pred CeEEEEecCCCC--hhhHhhhhcccCCCCCCcEEEEEcCChhH
Q 047158 21 RRVFVVLDNLDH--IDQLKPLAGENKWFGSGSRIIITNRNEHL 61 (212)
Q Consensus 21 kr~LlvlDdv~~--~~~~~~l~~~~~~~~~gs~iivTtR~~~~ 61 (212)
++=.+|+|+++. .+...+|+-.+-....++.+|++|++...
T Consensus 102 ~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~~~ 144 (162)
T PF13177_consen 102 KYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNPSK 144 (162)
T ss_dssp SSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-GGG
T ss_pred CceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECChHH
Confidence 355889999985 34566666655555678889999887653
No 115
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=54.91 E-value=1.5e+02 Score=26.05 Aligned_cols=102 Identities=16% Similarity=0.163 Sum_probs=54.3
Q ss_pred HHHHHHhccCeEEEEecCCCChh----------------hHhhhhcccCC--CCCCcEEEEEcCChhHHhh-----cCCC
Q 047158 12 NMMSSRLLHRRVFVVLDNLDHID----------------QLKPLAGENKW--FGSGSRIIITNRNEHLLKV-----FEVD 68 (212)
Q Consensus 12 ~~l~~~L~~kr~LlvlDdv~~~~----------------~~~~l~~~~~~--~~~gs~iivTtR~~~~~~~-----~~~~ 68 (212)
+.+.........+|++|+++... .+..++..+.. ...+-.||.||........ ....
T Consensus 138 ~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~~~~ld~al~r~gRfd 217 (495)
T TIGR01241 138 DLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRPDVLDPALLRPGRFD 217 (495)
T ss_pred HHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEecCChhhcCHHHhcCCcce
Confidence 33444444567899999996421 11222222211 1234456666755432211 1135
Q ss_pred ceEeCCCCChHHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCCCch
Q 047158 69 GVCTVPRLCLGKSFQLFSWHAFRKDKPPQRFMKLSRELLRCAEGLPLE 116 (212)
Q Consensus 69 ~~~~l~~l~~~~a~~Ll~~~~~~~~~~~~~~~~~~~~i~~~c~glPLa 116 (212)
..+.++..+.++-.++|..+........ ......+++.+.|+--+
T Consensus 218 ~~i~i~~Pd~~~R~~il~~~l~~~~~~~---~~~l~~la~~t~G~sga 262 (495)
T TIGR01241 218 RQVVVDLPDIKGREEILKVHAKNKKLAP---DVDLKAVARRTPGFSGA 262 (495)
T ss_pred EEEEcCCCCHHHHHHHHHHHHhcCCCCc---chhHHHHHHhCCCCCHH
Confidence 5788999999888898887663322111 11234566666665544
No 116
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=54.60 E-value=65 Score=26.36 Aligned_cols=69 Identities=13% Similarity=0.126 Sum_probs=45.7
Q ss_pred cCeEEEEecCCCChh--hHhhhhcccCCCCCCcEEEEEcCCh-hHHhhc-CCCceEeCCCCChHHHHHHHHHh
Q 047158 20 HRRVFVVLDNLDHID--QLKPLAGENKWFGSGSRIIITNRNE-HLLKVF-EVDGVCTVPRLCLGKSFQLFSWH 88 (212)
Q Consensus 20 ~kr~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~iivTtR~~-~~~~~~-~~~~~~~l~~l~~~~a~~Ll~~~ 88 (212)
+++=++|+|+++... ...+++..+....+++.+|++|.+. .+.+.+ .-...+++.+++.++..+.+...
T Consensus 89 ~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f~~l~~~~l~~~l~~~ 161 (299)
T PRK07132 89 SQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEPDQQKILAKLLSK 161 (299)
T ss_pred CCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEECCCCCHHHHHHHHHHc
Confidence 467788889887543 3556666665555677777666443 333332 23567999999999988777653
No 117
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=53.67 E-value=1.1e+02 Score=24.87 Aligned_cols=66 Identities=14% Similarity=0.195 Sum_probs=40.9
Q ss_pred cCeEEEEecCCCCh--hhHhhhhcccCCCCCCcEEEEEcCChh-HHhhcC-CCceEeCCCCChHHHHHHHH
Q 047158 20 HRRVFVVLDNLDHI--DQLKPLAGENKWFGSGSRIIITNRNEH-LLKVFE-VDGVCTVPRLCLGKSFQLFS 86 (212)
Q Consensus 20 ~kr~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~iivTtR~~~-~~~~~~-~~~~~~l~~l~~~~a~~Ll~ 86 (212)
+++=.+|+|+++.. ...+.|+-.+-...+++.+|++|.+.. +...+- -...+++.+ +.++..+.+.
T Consensus 103 ~~~kV~II~~ad~m~~~AaNaLLKtLEEPp~~t~~iL~t~~~~~lLpTI~SRcq~i~f~~-~~~~~~~~L~ 172 (290)
T PRK07276 103 GKQQVFIIKDADKMHVNAANSLLKVIEEPQSEIYIFLLTNDENKVLPTIKSRTQIFHFPK-NEAYLIQLLE 172 (290)
T ss_pred CCcEEEEeehhhhcCHHHHHHHHHHhcCCCCCeEEEEEECChhhCchHHHHcceeeeCCC-cHHHHHHHHH
Confidence 45568899999864 456777766666566677777776543 333332 234566765 6666666665
No 118
>PF06144 DNA_pol3_delta: DNA polymerase III, delta subunit; InterPro: IPR010372 DNA polymerase III, delta subunit (2.7.7.7 from EC) is required for, along with delta' subunit, the assembly of the processivity factor beta(2) onto primed DNA in the DNA polymerase III holoenzyme-catalysed reaction []. The delta subunit is also known as HolA.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication, 0009360 DNA polymerase III complex; PDB: 3GLG_F 1XXH_A 1JQL_B 3GLF_F 1JQJ_C 3GLI_F.
Probab=52.87 E-value=54 Score=23.70 Aligned_cols=92 Identities=12% Similarity=-0.012 Sum_probs=46.7
Q ss_pred CeEEEEecCC------CChhhHhhhhcccCCCCCCcEEEEEcC-Chh----HHhhcC-CCceEeCCCCChHHHHHHHHHh
Q 047158 21 RRVFVVLDNL------DHIDQLKPLAGENKWFGSGSRIIITNR-NEH----LLKVFE-VDGVCTVPRLCLGKSFQLFSWH 88 (212)
Q Consensus 21 kr~LlvlDdv------~~~~~~~~l~~~~~~~~~gs~iivTtR-~~~----~~~~~~-~~~~~~l~~l~~~~a~~Ll~~~ 88 (212)
.+-++|+.++ .....++.+...+....+++.+|+.+. ... ....+. ...++...++...+....+...
T Consensus 57 ~~klvii~~~~~l~~~~~~~~~~~l~~~l~~~~~~~~lii~~~~~~~~~~k~~k~l~~~~~~~~~~~~~~~~~~~~i~~~ 136 (172)
T PF06144_consen 57 DKKLVIIKNAPFLKDKLKKKEIKALIEYLSNPPPDCILIIFSEEKLDKRKKLYKALKKQAIVIECKKPKEQELPRWIKER 136 (172)
T ss_dssp SEEEEEEE-----TT-S-TTHHHHHHHHTTT--SSEEEEEEES-S--HHHHHHHHHTTTEEEEEE----TTTHHHHHHHH
T ss_pred CCeEEEEecCccccccccHHHHHHHHHHHhCCCCCEEEEEEeCCchhhhhhHHHHHhcccceEEecCCCHHHHHHHHHHH
Confidence 4666777776 344567777777776667887888776 222 222222 2345677777777777777665
Q ss_pred hcCCCCCChhHHHHHHHHHHHhCCCC
Q 047158 89 AFRKDKPPQRFMKLSRELLRCAEGLP 114 (212)
Q Consensus 89 ~~~~~~~~~~~~~~~~~i~~~c~glP 114 (212)
+-...- .-.+.++..+++..++-+
T Consensus 137 ~~~~g~--~i~~~a~~~L~~~~~~d~ 160 (172)
T PF06144_consen 137 AKKNGL--KIDPDAAQYLIERVGNDL 160 (172)
T ss_dssp HHHTT---EE-HHHHHHHHHHHTT-H
T ss_pred HHHcCC--CCCHHHHHHHHHHhChHH
Confidence 532211 123455666777766644
No 119
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=52.66 E-value=56 Score=26.48 Aligned_cols=56 Identities=20% Similarity=0.273 Sum_probs=31.3
Q ss_pred HHHHHHHHHHhc--cCeEEEEecCCCC--hhhHhhhhcccCC--CCCCcEEEEEcCChhHHh
Q 047158 8 DRGLNMMSSRLL--HRRVFVVLDNLDH--IDQLKPLAGENKW--FGSGSRIIITNRNEHLLK 63 (212)
Q Consensus 8 ~~~~~~l~~~L~--~kr~LlvlDdv~~--~~~~~~l~~~~~~--~~~gs~iivTtR~~~~~~ 63 (212)
++....+.+.|. ++|..+++||++. .+....++..+.. ..++..+|+..-...+..
T Consensus 157 ~~~~~~~~~~l~~~~~~iViiIDdLDR~~~~~i~~~l~~ik~~~~~~~i~~Il~~D~~~l~~ 218 (325)
T PF07693_consen 157 EELISKIKKKLKESKKRIVIIIDDLDRCSPEEIVELLEAIKLLLDFPNIIFILAFDPEILEK 218 (325)
T ss_pred HHHHHHHHHhhhcCCceEEEEEcchhcCCcHHHHHHHHHHHHhcCCCCeEEEEEecHHHHHH
Confidence 335556666664 4799999999985 3333222222211 226776666654444443
No 120
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=52.66 E-value=55 Score=26.51 Aligned_cols=67 Identities=13% Similarity=0.188 Sum_probs=37.5
Q ss_pred CeEEEEecCCCCh---hhHhhhhcccCCCCCCcEEEEEcCChhHH-hhc-CCCceEeCCCCChHHHHHHHHH
Q 047158 21 RRVFVVLDNLDHI---DQLKPLAGENKWFGSGSRIIITNRNEHLL-KVF-EVDGVCTVPRLCLGKSFQLFSW 87 (212)
Q Consensus 21 kr~LlvlDdv~~~---~~~~~l~~~~~~~~~gs~iivTtR~~~~~-~~~-~~~~~~~l~~l~~~~a~~Ll~~ 87 (212)
.+-++|+|+++.. +....+...+.....++.+|+||...... ..+ .-...+.++..+.++..+++..
T Consensus 100 ~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~~~i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 100 GGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRCRVIDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred CCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhceEEEeCCCCHHHHHHHHHH
Confidence 4567899999754 22223332233334577888888654321 111 1123567777777777666543
No 121
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=52.54 E-value=32 Score=29.74 Aligned_cols=69 Identities=12% Similarity=0.116 Sum_probs=39.6
Q ss_pred eEEEEecCCCChh----hHhhhhcccCC-CCCCcEEEEEcCChh-H--------HhhcCCCceEeCCCCChHHHHHHHHH
Q 047158 22 RVFVVLDNLDHID----QLKPLAGENKW-FGSGSRIIITNRNEH-L--------LKVFEVDGVCTVPRLCLGKSFQLFSW 87 (212)
Q Consensus 22 r~LlvlDdv~~~~----~~~~l~~~~~~-~~~gs~iivTtR~~~-~--------~~~~~~~~~~~l~~l~~~~a~~Ll~~ 87 (212)
.-+|++||+.... ..+.+...+.. ...|..|++||.... . ...+....++++++++.++-.+++..
T Consensus 212 ~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~ 291 (450)
T PRK00149 212 VDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILKK 291 (450)
T ss_pred CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHHHH
Confidence 3488999996321 11222221110 113445788876432 1 11222345789999999999999988
Q ss_pred hhc
Q 047158 88 HAF 90 (212)
Q Consensus 88 ~~~ 90 (212)
.+-
T Consensus 292 ~~~ 294 (450)
T PRK00149 292 KAE 294 (450)
T ss_pred HHH
Confidence 774
No 122
>PRK07413 hypothetical protein; Validated
Probab=51.45 E-value=38 Score=28.73 Aligned_cols=52 Identities=25% Similarity=0.292 Sum_probs=31.8
Q ss_pred HHHHHHHHhccCe-EEEEecCCCChh-----hHhhhhcccCCCCCCcEEEEEcCChhH
Q 047158 10 GLNMMSSRLLHRR-VFVVLDNLDHID-----QLKPLAGENKWFGSGSRIIITNRNEHL 61 (212)
Q Consensus 10 ~~~~l~~~L~~kr-~LlvlDdv~~~~-----~~~~l~~~~~~~~~gs~iivTtR~~~~ 61 (212)
..+..++.+.... =|+|||.+...- ..+.+...+.....+..||+|-|+..-
T Consensus 113 ~~~~a~~~i~sg~ydlvILDEi~~Al~~gll~~eevl~~L~~rP~~~evVLTGR~ap~ 170 (382)
T PRK07413 113 GWDIAKGAIASGLYSVVVLDELNPVLDLGLLPVDEVVNTLKSRPEGLEIIITGRAAPQ 170 (382)
T ss_pred HHHHHHHHHhCCCCCEEEEehhHHHHHCCCccHHHHHHHHHhCCCCCEEEEeCCCCCH
Confidence 3445566666554 499999985332 223333333434457789999998643
No 123
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=51.29 E-value=1.5e+02 Score=25.10 Aligned_cols=72 Identities=18% Similarity=0.239 Sum_probs=42.8
Q ss_pred cCeEEEEecCCCChh------------h----HhhhhcccCC--CCCCcEEEEEcCChhHHhhc-----CCCceEeCCCC
Q 047158 20 HRRVFVVLDNLDHID------------Q----LKPLAGENKW--FGSGSRIIITNRNEHLLKVF-----EVDGVCTVPRL 76 (212)
Q Consensus 20 ~kr~LlvlDdv~~~~------------~----~~~l~~~~~~--~~~gs~iivTtR~~~~~~~~-----~~~~~~~l~~l 76 (212)
....+|++|+++... . +..+...+.. ...+..||.||......... .....+.+++.
T Consensus 223 ~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P 302 (389)
T PRK03992 223 KAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLP 302 (389)
T ss_pred cCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEEecCChhhCCHHHcCCccCceEEEECCC
Confidence 356899999997531 1 1222222221 12345677777654332211 12457899999
Q ss_pred ChHHHHHHHHHhhcC
Q 047158 77 CLGKSFQLFSWHAFR 91 (212)
Q Consensus 77 ~~~~a~~Ll~~~~~~ 91 (212)
+.++-.++|..+..+
T Consensus 303 ~~~~R~~Il~~~~~~ 317 (389)
T PRK03992 303 DEEGRLEILKIHTRK 317 (389)
T ss_pred CHHHHHHHHHHHhcc
Confidence 999999999877643
No 124
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=50.62 E-value=1.3e+02 Score=25.79 Aligned_cols=96 Identities=11% Similarity=0.120 Sum_probs=52.0
Q ss_pred hccCeEEEEecCCCChh----------------hHhhhhcccCC--CCCCcEEEEEcCChhHHhh--c---CCCceEeCC
Q 047158 18 LLHRRVFVVLDNLDHID----------------QLKPLAGENKW--FGSGSRIIITNRNEHLLKV--F---EVDGVCTVP 74 (212)
Q Consensus 18 L~~kr~LlvlDdv~~~~----------------~~~~l~~~~~~--~~~gs~iivTtR~~~~~~~--~---~~~~~~~l~ 74 (212)
....+.+|++|+++... .+..++..+.. ...+..||.||...+.... . .....+.++
T Consensus 235 ~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~ 314 (398)
T PTZ00454 235 RENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFP 314 (398)
T ss_pred HhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchhCCHHHcCCCcccEEEEeC
Confidence 34568899999986421 11222222221 1235678888876554322 1 124568899
Q ss_pred CCChHHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCCCch
Q 047158 75 RLCLGKSFQLFSWHAFRKDKPPQRFMKLSRELLRCAEGLPLE 116 (212)
Q Consensus 75 ~l~~~~a~~Ll~~~~~~~~~~~~~~~~~~~~i~~~c~glPLa 116 (212)
..+.++-.++|..+..+.. ..++ ....++++...|+--|
T Consensus 315 ~P~~~~R~~Il~~~~~~~~-l~~d--vd~~~la~~t~g~sga 353 (398)
T PTZ00454 315 LPDRRQKRLIFQTITSKMN-LSEE--VDLEDFVSRPEKISAA 353 (398)
T ss_pred CcCHHHHHHHHHHHHhcCC-CCcc--cCHHHHHHHcCCCCHH
Confidence 9999888888876553221 1111 1134455556665444
No 125
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=50.52 E-value=22 Score=26.99 Aligned_cols=39 Identities=15% Similarity=0.217 Sum_probs=24.8
Q ss_pred EEEEecCCCC---hhhHhhhhcccCCCC-CCcEEEEEcCChhH
Q 047158 23 VFVVLDNLDH---IDQLKPLAGENKWFG-SGSRIIITNRNEHL 61 (212)
Q Consensus 23 ~LlvlDdv~~---~~~~~~l~~~~~~~~-~gs~iivTtR~~~~ 61 (212)
.++++|..+. +.....+...+.... .+..||+||.++.+
T Consensus 259 ~illiDEpE~~LHp~~q~~l~~~l~~~~~~~~QviitTHSp~i 301 (303)
T PF13304_consen 259 SILLIDEPENHLHPSWQRKLIELLKELSKKNIQVIITTHSPFI 301 (303)
T ss_dssp SEEEEESSSTTSSHHHHHHHHHHHHHTGGGSSEEEEEES-GGG
T ss_pred eEEEecCCcCCCCHHHHHHHHHHHHhhCccCCEEEEeCccchh
Confidence 7899999974 333344444333333 37899999998765
No 126
>PRK07413 hypothetical protein; Validated
Probab=49.54 E-value=30 Score=29.38 Aligned_cols=51 Identities=18% Similarity=0.274 Sum_probs=31.6
Q ss_pred HHHHHHHHHHhccC-eEEEEecCCCChh-----hHhhhhcccCCCCCCcEEEEEcCC
Q 047158 8 DRGLNMMSSRLLHR-RVFVVLDNLDHID-----QLKPLAGENKWFGSGSRIIITNRN 58 (212)
Q Consensus 8 ~~~~~~l~~~L~~k-r~LlvlDdv~~~~-----~~~~l~~~~~~~~~gs~iivTtR~ 58 (212)
++..+..++.+... -=|+|||.+-..- ..+.+...+....++..||+|-|+
T Consensus 291 ~~~~~~a~~~i~~g~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVLTGR~ 347 (382)
T PRK07413 291 ERAWEIARAAIASGLYKTIILDELNPTVDLELLPVEPIVQTLLRKPRDTEVIITGRC 347 (382)
T ss_pred HHHHHHHHHHHhCCCCCEEEEechHHHHHCCCccHHHHHHHHHhCCCCCEEEEeCCC
Confidence 34455666666654 4499999985332 223333333434457789999998
No 127
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=48.59 E-value=65 Score=24.52 Aligned_cols=59 Identities=10% Similarity=0.085 Sum_probs=32.2
Q ss_pred HHHHHhccCeEEEEecCCCCh---hhHhhhhcccCCCCCCcEEEEEcCChhHHhhcCCCceEeC
Q 047158 13 MMSSRLLHRRVFVVLDNLDHI---DQLKPLAGENKWFGSGSRIIITNRNEHLLKVFEVDGVCTV 73 (212)
Q Consensus 13 ~l~~~L~~kr~LlvlDdv~~~---~~~~~l~~~~~~~~~gs~iivTtR~~~~~~~~~~~~~~~l 73 (212)
.+...+..+.-+++||..... ...+.+...+.....+..||++|.+...... +.+++.+
T Consensus 149 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~--~d~i~~l 210 (221)
T cd03244 149 CLARALLRKSKILVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIID--SDRILVL 210 (221)
T ss_pred HHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhh--CCEEEEE
Confidence 455555666778999998632 2222222222222224568888887766554 3444444
No 128
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=48.55 E-value=80 Score=27.41 Aligned_cols=69 Identities=10% Similarity=0.050 Sum_probs=39.0
Q ss_pred eEEEEecCCCChhh----HhhhhcccCC-CCCCcEEEEEcCCh-hH--------HhhcCCCceEeCCCCChHHHHHHHHH
Q 047158 22 RVFVVLDNLDHIDQ----LKPLAGENKW-FGSGSRIIITNRNE-HL--------LKVFEVDGVCTVPRLCLGKSFQLFSW 87 (212)
Q Consensus 22 r~LlvlDdv~~~~~----~~~l~~~~~~-~~~gs~iivTtR~~-~~--------~~~~~~~~~~~l~~l~~~~a~~Ll~~ 87 (212)
.-+|++||+..... .+.+...+.. ...|..||+||... .. ...+....++.+.+++.++-..++.+
T Consensus 203 ~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~ 282 (445)
T PRK12422 203 VDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLER 282 (445)
T ss_pred CCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHH
Confidence 34788899864311 1122211110 11345688888542 21 11122346788999999999999987
Q ss_pred hhc
Q 047158 88 HAF 90 (212)
Q Consensus 88 ~~~ 90 (212)
.+-
T Consensus 283 k~~ 285 (445)
T PRK12422 283 KAE 285 (445)
T ss_pred HHH
Confidence 663
No 129
>PF02082 Rrf2: Transcriptional regulator; InterPro: IPR000944 The following uncharacterised bacterial proteins have been shown to be evolutionary related, Desulfovibrio vulgaris protein Rrf2; Escherichia coli hypothetical proteins yfhP and yjeB; Bacillus subtilis hypothetical proteins yhdE, yrzC and ywgB; Mycobacterium tuberculosis hypothetical protein Rv1287; and Synechocystis sp. (strain PCC 6803) hypothetical protein slr0846. These are small proteins of 12 to 18kDa which seem to contain a signal sequence, and may represent a family of probable transcriptional regulators.; PDB: 3T8T_A 3T8R_A 3K69_A 3LWF_C 1XD7_A 2Y75_E 1YLF_C.
Probab=48.24 E-value=28 Score=22.17 Aligned_cols=52 Identities=12% Similarity=0.050 Sum_probs=34.4
Q ss_pred hhHHhhhhccCCC--CCHHHHHHhhhhcCCcchhhHHHHhhccCceecC--CCcEE
Q 047158 144 KNVFMDIAHLFVG--MDKDYVLKILQGCGFSSEIVFFVLTQRCLIVIDE--DNRLK 195 (212)
Q Consensus 144 ~~~~~~la~f~~~--~~~~~l~~~~~~~~~~~~~~l~~L~~~sll~~~~--~~~~~ 195 (212)
-+++.+++..+.+ ++.+.+..............++.|...++|+... +|.|.
T Consensus 11 l~~l~~la~~~~~~~~s~~eiA~~~~i~~~~l~kil~~L~~~Gli~s~~G~~GGy~ 66 (83)
T PF02082_consen 11 LRILLYLARHPDGKPVSSKEIAERLGISPSYLRKILQKLKKAGLIESSRGRGGGYR 66 (83)
T ss_dssp HHHHHHHHCTTTSC-BEHHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETSTTSEEE
T ss_pred HHHHHHHHhCCCCCCCCHHHHHHHHCcCHHHHHHHHHHHhhCCeeEecCCCCCcee
Confidence 3456677777663 6777777765554444556799999999998653 35443
No 130
>PRK11569 transcriptional repressor IclR; Provisional
Probab=46.92 E-value=73 Score=25.46 Aligned_cols=54 Identities=2% Similarity=-0.160 Sum_probs=39.6
Q ss_pred CCCCCHHHHHHhhhhcCCcchhhHHHHhhccCceecC-CCcEEecHHHHHHHHHH
Q 047158 154 FVGMDKDYVLKILQGCGFSSEIVFFVLTQRCLIVIDE-DNRLKMHDLIRDMKEKL 207 (212)
Q Consensus 154 ~~~~~~~~l~~~~~~~~~~~~~~l~~L~~~sll~~~~-~~~~~mH~lv~~~a~~~ 207 (212)
..+.+...+........-.....+..|++.++++.+. .++|++-.-+..++...
T Consensus 41 ~~~~~lseia~~lglpksTv~RlL~tL~~~G~l~~~~~~~~Y~lG~~l~~Lg~~~ 95 (274)
T PRK11569 41 NGSVALTELAQQAGLPNSTTHRLLTTMQQQGFVRQVGELGHWAIGAHAFIVGSSF 95 (274)
T ss_pred CCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEcCCCCeEecCHHHHHHHHHH
Confidence 3457777777777666666677899999999998765 57798877666665443
No 131
>CHL00181 cbbX CbbX; Provisional
Probab=46.75 E-value=1.6e+02 Score=23.90 Aligned_cols=70 Identities=9% Similarity=0.076 Sum_probs=44.0
Q ss_pred eEEEEecCCCCh-----------hhHhhhhcccCCCCCCcEEEEEcCChhHHhhc--------CCCceEeCCCCChHHHH
Q 047158 22 RVFVVLDNLDHI-----------DQLKPLAGENKWFGSGSRIIITNRNEHLLKVF--------EVDGVCTVPRLCLGKSF 82 (212)
Q Consensus 22 r~LlvlDdv~~~-----------~~~~~l~~~~~~~~~gs~iivTtR~~~~~~~~--------~~~~~~~l~~l~~~~a~ 82 (212)
.-.|++|++... +....|...+.....+..||.++....+.... -....+.+++++.++-.
T Consensus 123 ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~ 202 (287)
T CHL00181 123 GGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELL 202 (287)
T ss_pred CCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHH
Confidence 458999999642 23344444444444556777777543332111 13457999999999999
Q ss_pred HHHHHhhcC
Q 047158 83 QLFSWHAFR 91 (212)
Q Consensus 83 ~Ll~~~~~~ 91 (212)
+++...+-.
T Consensus 203 ~I~~~~l~~ 211 (287)
T CHL00181 203 QIAKIMLEE 211 (287)
T ss_pred HHHHHHHHH
Confidence 998877643
No 132
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=46.39 E-value=57 Score=25.80 Aligned_cols=62 Identities=21% Similarity=0.220 Sum_probs=39.8
Q ss_pred HHHHHHHHHhccCeEEEEecCCCChhhHhhhh---cccCC-CCCCcEEEEEcCChhHHhhcCCCce
Q 047158 9 RGLNMMSSRLLHRRVFVVLDNLDHIDQLKPLA---GENKW-FGSGSRIIITNRNEHLLKVFEVDGV 70 (212)
Q Consensus 9 ~~~~~l~~~L~~kr~LlvlDdv~~~~~~~~l~---~~~~~-~~~gs~iivTtR~~~~~~~~~~~~~ 70 (212)
.-...+.+.+.-+.=|.|||..++--+++++. ..+.. ..+|+.+|+.|..+.++..+.+..+
T Consensus 150 kKR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~v 215 (251)
T COG0396 150 KKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKV 215 (251)
T ss_pred HHHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEE
Confidence 34456666777788899999998654433322 21111 2346678888988888888765544
No 133
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=46.06 E-value=1.1e+02 Score=27.32 Aligned_cols=87 Identities=13% Similarity=0.051 Sum_probs=54.5
Q ss_pred EEEecCCC--ChhhHhhhhcccCCCCCCcEEEEEcCChhHHhh--cCCCceEeCCCCChHHHHHHHHHhhcCCCCCChhH
Q 047158 24 FVVLDNLD--HIDQLKPLAGENKWFGSGSRIIITNRNEHLLKV--FEVDGVCTVPRLCLGKSFQLFSWHAFRKDKPPQRF 99 (212)
Q Consensus 24 LlvlDdv~--~~~~~~~l~~~~~~~~~gs~iivTtR~~~~~~~--~~~~~~~~l~~l~~~~a~~Ll~~~~~~~~~~~~~~ 99 (212)
..|+|.|. +...|.+|+-.+-..-..-+.|..|.+.+-... +.-...|.+..++.++-...+...+..... ...
T Consensus 122 VyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip~TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~I--~~e 199 (515)
T COG2812 122 VYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIPNTILSRCQRFDFKRLDLEEIAKHLAAILDKEGI--NIE 199 (515)
T ss_pred EEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCchhhhhccccccccCCCHHHHHHHHHHHHHhcCC--ccC
Confidence 67889997 455688888766655556666666665543322 223456899999999888888766633221 122
Q ss_pred HHHHHHHHHHhCC
Q 047158 100 MKLSRELLRCAEG 112 (212)
Q Consensus 100 ~~~~~~i~~~c~g 112 (212)
+.+..-|.+.-+|
T Consensus 200 ~~aL~~ia~~a~G 212 (515)
T COG2812 200 EDALSLIARAAEG 212 (515)
T ss_pred HHHHHHHHHHcCC
Confidence 3445555555555
No 134
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=45.64 E-value=77 Score=23.09 Aligned_cols=56 Identities=13% Similarity=0.218 Sum_probs=33.6
Q ss_pred HHHHHhccCeEEEEecCCCC---hh---hHhhhhcccCCCCCCcEEEEEcCChhHHhhcCCCceEeC
Q 047158 13 MMSSRLLHRRVFVVLDNLDH---ID---QLKPLAGENKWFGSGSRIIITNRNEHLLKVFEVDGVCTV 73 (212)
Q Consensus 13 ~l~~~L~~kr~LlvlDdv~~---~~---~~~~l~~~~~~~~~gs~iivTtR~~~~~~~~~~~~~~~l 73 (212)
.+...+..+.-+++||.... .. .+..+...+. .+..||++|.+...... +.+++.+
T Consensus 106 ~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~---~~~tii~~sh~~~~~~~--~d~~~~l 167 (171)
T cd03228 106 AIARALLRDPPILILDEATSALDPETEALILEALRALA---KGKTVIVIAHRLSTIRD--ADRIIVL 167 (171)
T ss_pred HHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhc---CCCEEEEEecCHHHHHh--CCEEEEE
Confidence 45566667778999999863 22 2333333332 24678999988776654 3444444
No 135
>PRK09834 DNA-binding transcriptional activator MhpR; Provisional
Probab=44.91 E-value=80 Score=25.05 Aligned_cols=53 Identities=9% Similarity=0.087 Sum_probs=38.8
Q ss_pred CCCCCHHHHHHhhhhcCCcchhhHHHHhhccCceecC-CCcEEecHHHHHHHHH
Q 047158 154 FVGMDKDYVLKILQGCGFSSEIVFFVLTQRCLIVIDE-DNRLKMHDLIRDMKEK 206 (212)
Q Consensus 154 ~~~~~~~~l~~~~~~~~~~~~~~l~~L~~~sll~~~~-~~~~~mH~lv~~~a~~ 206 (212)
+.+++...+.+.+....-.....++.|.+.+++.... +++|++-.-+..++..
T Consensus 24 ~~~ls~~eia~~lgl~kstv~RlL~tL~~~g~v~~~~~~~~Y~Lg~~~~~l~~~ 77 (263)
T PRK09834 24 DGGATVGLLAELTGLHRTTVRRLLETLQEEGYVRRSASDDSFRLTLKVRQLSEG 77 (263)
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEecCCCcEEEcHHHHHHHHh
Confidence 3457778887777666556677899999999999765 5678876666555544
No 136
>COG1414 IclR Transcriptional regulator [Transcription]
Probab=44.88 E-value=84 Score=24.78 Aligned_cols=61 Identities=11% Similarity=0.024 Sum_probs=43.3
Q ss_pred HhhhhccCCCCCHHHHHHhhhhcCCcchhhHHHHhhccCceecC-CCcEEecHHHHHHHHHH
Q 047158 147 FMDIAHLFVGMDKDYVLKILQGCGFSSEIVFFVLTQRCLIVIDE-DNRLKMHDLIRDMKEKL 207 (212)
Q Consensus 147 ~~~la~f~~~~~~~~l~~~~~~~~~~~~~~l~~L~~~sll~~~~-~~~~~mH~lv~~~a~~~ 207 (212)
+-+++--|.+.+...+.+......-.....+..|++.+++..++ +|+|++=.-+-+++...
T Consensus 10 L~~l~~~~~~l~l~ela~~~glpksT~~RlL~tL~~~G~v~~d~~~g~Y~Lg~~~~~lg~~~ 71 (246)
T COG1414 10 LDLLAEGPGGLSLAELAERLGLPKSTVHRLLQTLVELGYVEQDPEDGRYRLGPRLLELGAAA 71 (246)
T ss_pred HHHHHhCCCCCCHHHHHHHhCcCHHHHHHHHHHHHHCCCEEEcCCCCcEeehHHHHHHHHHH
Confidence 33444444456677777777666666777899999999999988 56888776665555543
No 137
>PF09114 MotA_activ: Transcription factor MotA, activation domain; InterPro: IPR015198 Transcription factor MotA is required for the activation of middle promoters in Bacteriophage T4, in addition to phage T4 co-activator AsiA, and sigma-70-containing Escherichia coli RNA polymerase. Phage T4 middle promoters have the sigma70 -10 DNA element, but not the -35 element; instead, they have a MotA box at -30 to which the transcription factor MotA binds []. MotA and AsiA interact with the C-terminal of sigma70 (region 4), which normally binds the -35 element and the beta-flap, thereby diverting sigma70 away from host promoters that require -35 element-binding to phage T4 middle promoters. Transcription factor MotA has two domains: an N-terminal domain required for binding to sigma70, and a C-terminal domain required for binding to the -30 MotA box element in the phage T4 middle promoter. This entry represents the N-terminal (activation) domain of MotA factors that binds sigma70. The N-terminal domain adopts an almost completely alpha-helical topology, with five alpha-helices and a short, two-stranded, beta-ribbon. Four alpha helices (alpha1, alpha3, alpha4 and alpha5) are amphipathic and pack their hydrophobic surfaces around the central helix alpha2 [].; PDB: 1BJA_B 1I1S_A.
Probab=44.50 E-value=91 Score=20.57 Aligned_cols=79 Identities=22% Similarity=0.232 Sum_probs=44.7
Q ss_pred HHHHHhhcCCCCchhhhHHhhhhccCCC-CCHHHHHHhhhhc--CCcchhhHHHHhhccCceecCCCcEEec----HHHH
Q 047158 129 NKLRVSFDVLNDDEEKNVFMDIAHLFVG-MDKDYVLKILQGC--GFSSEIVFFVLTQRCLIVIDEDNRLKMH----DLIR 201 (212)
Q Consensus 129 ~~l~~s~~~L~~~~~~~~~~~la~f~~~-~~~~~l~~~~~~~--~~~~~~~l~~L~~~sll~~~~~~~~~mH----~lv~ 201 (212)
-..+.|-+.| ++..-..|-.++- .. ++...+......+ .......+..|+.++|++.+++| |..- +++.
T Consensus 5 yI~K~s~nal-sE~~~~ilI~v~K--k~Fit~~ev~e~l~~~~~~~~V~SNIGvLIKkglIEKSGDG-lv~T~~g~~Ii~ 80 (96)
T PF09114_consen 5 YIIKASNNAL-SENAANILIQVAK--KNFITASEVREALATEMNKASVNSNIGVLIKKGLIEKSGDG-LVITEEGMDIII 80 (96)
T ss_dssp HHHHHTTTSS--HHHHHHHHHHHH--STTB-HHHHHH-T-TTS-HHHHHHHHHHHHHTTSEEEETTE-EEE-HHHHHHHH
T ss_pred hHHHHhhhhh-hHHHHHHHHHHHH--HccCCHHHHHHHHHHHhhhhHHHHhHHHHHHcCcccccCCc-eEEechHHHHHH
Confidence 3456666777 6666555544432 23 4666666644221 12234469999999999999888 4332 5666
Q ss_pred HHHHHHHhcC
Q 047158 202 DMKEKLFAKN 211 (212)
Q Consensus 202 ~~a~~~~~~~ 211 (212)
+.|.-++.++
T Consensus 81 ~AA~l~a~en 90 (96)
T PF09114_consen 81 QAAELWAQEN 90 (96)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHhcC
Confidence 6665554443
No 138
>PF00392 GntR: Bacterial regulatory proteins, gntR family; InterPro: IPR000524 Many bacterial transcription regulation proteins bind DNA through a helix-turn-helix (HTH) motif, which can be classified into subfamilies on the basis of sequence similarities. The HTH GntR family has many members distributed among diverse bacterial groups that regulate various biological processes. It was named GntR after the Bacillus subtilis repressor of the gluconate operon []. Family members include GntR, HutC, KorA, NtaR, FadR, ExuR, FarR, DgoR and PhnF. The crystal structure of the FadR protein has been determined []. In general, these proteins contain a DNA-binding HTH domain at the N terminus, and an effector-binding or oligomerisation domain at the C terminus (IPR011711 from INTERPRO). The DNA-binding domain is well conserved in structure for the whole of the GntR family, consisting of a 3-helical bundle core with a small beta-sheet (wing); the GntR winged helix structure is similar to that found in several other transcriptional regulator families. The regions outside the DNA-binding domain are more variable and are consequently used to define GntR subfamilies []. This entry represents the N-terminal DNA-binding domain of the GntR family.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1HW1_B 1H9T_A 1HW2_A 1H9G_A 1E2X_A 3IHU_A 3C7J_A 2RA5_A 3BY6_C 3IC7_A ....
Probab=44.35 E-value=28 Score=20.91 Aligned_cols=38 Identities=8% Similarity=-0.070 Sum_probs=28.6
Q ss_pred C-CHHHHHHhhhhcCCcchhhHHHHhhccCceecCCCcE
Q 047158 157 M-DKDYVLKILQGCGFSSEIVFFVLTQRCLIVIDEDNRL 194 (212)
Q Consensus 157 ~-~~~~l~~~~~~~~~~~~~~l~~L~~~sll~~~~~~~~ 194 (212)
+ +...+...+..+......+++.|.+.++++......+
T Consensus 24 lps~~~la~~~~vsr~tvr~al~~L~~~g~i~~~~~~G~ 62 (64)
T PF00392_consen 24 LPSERELAERYGVSRTTVREALRRLEAEGLIERRPGRGT 62 (64)
T ss_dssp E--HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETTTEE
T ss_pred eCCHHHHHHHhccCCcHHHHHHHHHHHCCcEEEECCceE
Confidence 6 7777777777777677889999999999998765443
No 139
>PF14394 DUF4423: Domain of unknown function (DUF4423)
Probab=44.00 E-value=59 Score=24.17 Aligned_cols=37 Identities=22% Similarity=0.195 Sum_probs=25.8
Q ss_pred CHHHHHHhh--hhcCCcchhhHHHHhhccCceecCCCcE
Q 047158 158 DKDYVLKIL--QGCGFSSEIVFFVLTQRCLIVIDEDNRL 194 (212)
Q Consensus 158 ~~~~l~~~~--~~~~~~~~~~l~~L~~~sll~~~~~~~~ 194 (212)
+...+.... .-.....+..++.|.+.+||+..++|.|
T Consensus 41 d~~~iak~l~p~is~~ev~~sL~~L~~~gli~k~~~g~y 79 (171)
T PF14394_consen 41 DPEWIAKRLRPKISAEEVRDSLEFLEKLGLIKKDGDGKY 79 (171)
T ss_pred CHHHHHHHhcCCCCHHHHHHHHHHHHHCCCeEECCCCcE
Confidence 666666555 2233335667999999999999887664
No 140
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=43.67 E-value=75 Score=24.52 Aligned_cols=59 Identities=14% Similarity=0.166 Sum_probs=33.5
Q ss_pred HHHHHhccCeEEEEecCCCCh---hhHhhhhcccCCCCCCcEEEEEcCChhHHhhcCCCceEeC
Q 047158 13 MMSSRLLHRRVFVVLDNLDHI---DQLKPLAGENKWFGSGSRIIITNRNEHLLKVFEVDGVCTV 73 (212)
Q Consensus 13 ~l~~~L~~kr~LlvlDdv~~~---~~~~~l~~~~~~~~~gs~iivTtR~~~~~~~~~~~~~~~l 73 (212)
.+...|..+.=+++||..... ...+.+...+.....|..||++|.+..... . +.+++.+
T Consensus 149 ~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~~-~-~d~v~~l 210 (238)
T cd03249 149 AIARALLRNPKILLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIR-N-ADLIAVL 210 (238)
T ss_pred HHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHh-h-CCEEEEE
Confidence 455556666778999998632 222222222221124667888888877665 3 4555544
No 141
>cd00092 HTH_CRP helix_turn_helix, cAMP Regulatory protein C-terminus; DNA binding domain of prokaryotic regulatory proteins belonging to the catabolite activator protein family.
Probab=43.34 E-value=28 Score=20.70 Aligned_cols=41 Identities=10% Similarity=0.080 Sum_probs=30.2
Q ss_pred CCHHHHHHhhhhcCCcchhhHHHHhhccCceecCCCcEEec
Q 047158 157 MDKDYVLKILQGCGFSSEIVFFVLTQRCLIVIDEDNRLKMH 197 (212)
Q Consensus 157 ~~~~~l~~~~~~~~~~~~~~l~~L~~~sll~~~~~~~~~mH 197 (212)
++...+..............++.|.+.++|.....+.|.+.
T Consensus 26 ~s~~ela~~~g~s~~tv~r~l~~L~~~g~i~~~~~~~~~l~ 66 (67)
T cd00092 26 LTRQEIADYLGLTRETVSRTLKELEEEGLISRRGRGKYRVN 66 (67)
T ss_pred cCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecCCCeEEeC
Confidence 66777776665554455667999999999998765777764
No 142
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=43.05 E-value=95 Score=23.83 Aligned_cols=59 Identities=8% Similarity=0.164 Sum_probs=33.2
Q ss_pred HHHHHhccCeEEEEecCCCC---hhhHhhhhcccCCCCCCcEEEEEcCChhHHhhcCCCceEeC
Q 047158 13 MMSSRLLHRRVFVVLDNLDH---IDQLKPLAGENKWFGSGSRIIITNRNEHLLKVFEVDGVCTV 73 (212)
Q Consensus 13 ~l~~~L~~kr~LlvlDdv~~---~~~~~~l~~~~~~~~~gs~iivTtR~~~~~~~~~~~~~~~l 73 (212)
.+...|..+.=+++||..-. ....+.+...+.....|..||++|.+...... +.+++.+
T Consensus 148 ~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~--~d~v~~l 209 (234)
T cd03251 148 AIARALLKDPPILILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIEN--ADRIVVL 209 (234)
T ss_pred HHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhh--CCEEEEe
Confidence 45555566677899999853 22222222222222235568888888777654 4555554
No 143
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=42.63 E-value=82 Score=23.09 Aligned_cols=60 Identities=13% Similarity=0.005 Sum_probs=34.2
Q ss_pred HHHHHHhccCeEEEEecCCCCh---hhHhhhhcccCCCCCCcEEEEEcCChhHHhhcCCCceEeC
Q 047158 12 NMMSSRLLHRRVFVVLDNLDHI---DQLKPLAGENKWFGSGSRIIITNRNEHLLKVFEVDGVCTV 73 (212)
Q Consensus 12 ~~l~~~L~~kr~LlvlDdv~~~---~~~~~l~~~~~~~~~gs~iivTtR~~~~~~~~~~~~~~~l 73 (212)
-.+...+..+.=+++||..... ...+.+...+.....+..||++|.+...... ..+++.+
T Consensus 107 v~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~--~d~~~~l 169 (178)
T cd03247 107 LALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEH--MDKILFL 169 (178)
T ss_pred HHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHh--CCEEEEE
Confidence 3556666677788899998632 2222222222111235678899988877653 3444444
No 144
>PF09860 DUF2087: Uncharacterized protein conserved in bacteria (DUF2087); InterPro: IPR018656 This domain, found in various hypothetical prokaryotic proteins and transcriptional activators, has no known function.
Probab=42.01 E-value=86 Score=19.60 Aligned_cols=52 Identities=15% Similarity=0.011 Sum_probs=32.3
Q ss_pred hhHHhhhh-ccCCC--CCHHHHHHhhhhcCCcchhhHHHHhhccCceecCCCc-EE
Q 047158 144 KNVFMDIA-HLFVG--MDKDYVLKILQGCGFSSEIVFFVLTQRCLIVIDEDNR-LK 195 (212)
Q Consensus 144 ~~~~~~la-~f~~~--~~~~~l~~~~~~~~~~~~~~l~~L~~~sll~~~~~~~-~~ 195 (212)
..|+.+++ .|+.| .+...+-.++..--......=+.|++.+|++...+|. |.
T Consensus 14 ~~iL~~l~~~f~~g~~y~E~EVN~~L~~~~~D~a~LRR~LVd~g~L~R~~dg~~Yw 69 (71)
T PF09860_consen 14 LVILEYLASRFEPGREYSEKEVNEILKRFFDDYATLRRYLVDYGLLERTRDGSRYW 69 (71)
T ss_pred HHHHHHHHHhCCCCCccCHHHHHHHHHHHcccHHHHHHHHHHcCCeeecCCCCeee
Confidence 33555544 45554 6777766665553222333467799999999987665 54
No 145
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=41.83 E-value=53 Score=24.83 Aligned_cols=61 Identities=13% Similarity=0.084 Sum_probs=35.0
Q ss_pred HHHHHhccCeEEEEecCCCC---hhhHhhhhcccCC-CCCCcEEEEEcCChhHHhhcCCCceEeCCCC
Q 047158 13 MMSSRLLHRRVFVVLDNLDH---IDQLKPLAGENKW-FGSGSRIIITNRNEHLLKVFEVDGVCTVPRL 76 (212)
Q Consensus 13 ~l~~~L~~kr~LlvlDdv~~---~~~~~~l~~~~~~-~~~gs~iivTtR~~~~~~~~~~~~~~~l~~l 76 (212)
.+...+..+.-++++|.--. ....+.+...+.. ...|..||++|.+...... ..++.++.+
T Consensus 137 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~---~~~~~~~~~ 201 (207)
T PRK13539 137 ALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG---ARELDLGPF 201 (207)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc---CcEEeecCc
Confidence 45556666778999998853 2222222222221 1236679999988765553 556666553
No 146
>TIGR02431 pcaR_pcaU beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family. Member of this family are IclR-type transcriptional regulators with similar DNA binding sites, able to bind at least three different metabolites related to protocatechuate metabolism. Beta-ketoadipate is the inducer for PcaR, p-hydroxybenzoate for PobR, and protocatechuate for PcaU.
Probab=41.45 E-value=1e+02 Score=24.14 Aligned_cols=53 Identities=6% Similarity=-0.052 Sum_probs=40.1
Q ss_pred CCCCCHHHHHHhhhhcCCcchhhHHHHhhccCceecCCCcEEecHHHHHHHHHH
Q 047158 154 FVGMDKDYVLKILQGCGFSSEIVFFVLTQRCLIVIDEDNRLKMHDLIRDMKEKL 207 (212)
Q Consensus 154 ~~~~~~~~l~~~~~~~~~~~~~~l~~L~~~sll~~~~~~~~~mH~lv~~~a~~~ 207 (212)
+.+.+...+.+......-.....+..|++.+++..+ +++|++-.-+..++...
T Consensus 22 ~~~~~l~eia~~lglpksT~~RlL~tL~~~G~l~~~-~~~Y~lG~~~~~lg~~~ 74 (248)
T TIGR02431 22 RPRLTLTDVAEATGLTRAAARRFLLTLVELGYVTSD-GRLFWLTPRVLRLGYAY 74 (248)
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeC-CCEEEecHHHHHHHHHH
Confidence 345777777777766655667789999999999875 57798888777776554
No 147
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=40.63 E-value=92 Score=23.96 Aligned_cols=60 Identities=10% Similarity=0.167 Sum_probs=34.8
Q ss_pred HHHHHHhccCeEEEEecCCCCh---hhHhhhhcccCCCCCCcEEEEEcCChhHHhhcCCCceEeC
Q 047158 12 NMMSSRLLHRRVFVVLDNLDHI---DQLKPLAGENKWFGSGSRIIITNRNEHLLKVFEVDGVCTV 73 (212)
Q Consensus 12 ~~l~~~L~~kr~LlvlDdv~~~---~~~~~l~~~~~~~~~gs~iivTtR~~~~~~~~~~~~~~~l 73 (212)
-.+...|..+.=+++||..... ...+.+...+.....|..||++|.+...... +.+++.+
T Consensus 146 l~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~--~d~~~~l 208 (236)
T cd03253 146 VAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVN--ADKIIVL 208 (236)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHh--CCEEEEE
Confidence 3566667778889999998632 2222222222211125568888888877654 4455544
No 148
>CHL00195 ycf46 Ycf46; Provisional
Probab=40.44 E-value=2e+02 Score=25.45 Aligned_cols=96 Identities=14% Similarity=0.047 Sum_probs=51.7
Q ss_pred ccCeEEEEecCCCChh--------------hHhhhhcccCCCCCCcEEEEEcCChhHHhh-c----CCCceEeCCCCChH
Q 047158 19 LHRRVFVVLDNLDHID--------------QLKPLAGENKWFGSGSRIIITNRNEHLLKV-F----EVDGVCTVPRLCLG 79 (212)
Q Consensus 19 ~~kr~LlvlDdv~~~~--------------~~~~l~~~~~~~~~gs~iivTtR~~~~~~~-~----~~~~~~~l~~l~~~ 79 (212)
...+++|++|+++... .+..+...+.....+--||.||.+...... + -....+.++..+.+
T Consensus 316 ~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~ 395 (489)
T CHL00195 316 ALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATANNIDLLPLEILRKGRFDEIFFLDLPSLE 395 (489)
T ss_pred hcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEecCChhhCCHHHhCCCcCCeEEEeCCcCHH
Confidence 3568999999997421 011222222222233346667765543221 1 13567889999999
Q ss_pred HHHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCCCc
Q 047158 80 KSFQLFSWHAFRKDKPPQRFMKLSRELLRCAEGLPL 115 (212)
Q Consensus 80 ~a~~Ll~~~~~~~~~~~~~~~~~~~~i~~~c~glPL 115 (212)
+-.++|..+..+..... ........+++.+.|+--
T Consensus 396 eR~~Il~~~l~~~~~~~-~~~~dl~~La~~T~GfSG 430 (489)
T CHL00195 396 EREKIFKIHLQKFRPKS-WKKYDIKKLSKLSNKFSG 430 (489)
T ss_pred HHHHHHHHHHhhcCCCc-ccccCHHHHHhhcCCCCH
Confidence 99999987764422110 001123456666666543
No 149
>TIGR00611 recf recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=40.38 E-value=40 Score=28.35 Aligned_cols=43 Identities=19% Similarity=0.185 Sum_probs=26.9
Q ss_pred ccCeEEEEecCCCCh---hhHhhhhcccCCCCCCcEEEEEcCChhHHh
Q 047158 19 LHRRVFVVLDNLDHI---DQLKPLAGENKWFGSGSRIIITNRNEHLLK 63 (212)
Q Consensus 19 ~~kr~LlvlDdv~~~---~~~~~l~~~~~~~~~gs~iivTtR~~~~~~ 63 (212)
.++.-+++|||+-.. ...+.+...+... |..|++||.+.....
T Consensus 300 ~~~~pilLLDD~~seLD~~~r~~l~~~l~~~--~~qv~it~~~~~~~~ 345 (365)
T TIGR00611 300 GGEYPILLLDDVASELDDQRRRLLAELLQSL--GVQVFVTAISLDHLK 345 (365)
T ss_pred cCCCCEEEEcCchhccCHHHHHHHHHHHhhc--CCEEEEEecChhhcc
Confidence 456789999999643 2234444444322 557999998765433
No 150
>PRK11081 tRNA guanosine-2'-O-methyltransferase; Provisional
Probab=40.27 E-value=41 Score=26.37 Aligned_cols=77 Identities=6% Similarity=0.050 Sum_probs=42.2
Q ss_pred HHHHHHHHhcc--CeEEEEecCCCChhhHhhhhcccCCCCCCcEEEEEcCC-hhH--HhhcCCCceEeCCC-CChHHHHH
Q 047158 10 GLNMMSSRLLH--RRVFVVLDNLDHIDQLKPLAGENKWFGSGSRIIITNRN-EHL--LKVFEVDGVCTVPR-LCLGKSFQ 83 (212)
Q Consensus 10 ~~~~l~~~L~~--kr~LlvlDdv~~~~~~~~l~~~~~~~~~gs~iivTtR~-~~~--~~~~~~~~~~~l~~-l~~~~a~~ 83 (212)
..+++++.|.. ....+|||+|.+...+..+.......|-...+++.+.. ... ....+....+++.. -+.+++.+
T Consensus 5 r~~ri~~~l~~r~~~l~vvLd~V~~p~NlGAIiRta~AfGv~~V~~v~~~~~~~~~~~~s~Ga~~wv~i~~~~~~~~~i~ 84 (229)
T PRK11081 5 RYARICEMLARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEVHAVWPGSRMRTMGSTAAGSNSWVQVKTHRTIGDAVA 84 (229)
T ss_pred hHHhHHHHHhcCCCCeEEEEeCCCCcchHHHHHHHHHHhCCCeEEEecCCCccchhhhhcCCchheEEEEEeCCHHHHHH
Confidence 34557777765 36899999999999888877655444433333333221 111 11223333444332 24556666
Q ss_pred HHH
Q 047158 84 LFS 86 (212)
Q Consensus 84 Ll~ 86 (212)
-++
T Consensus 85 ~lk 87 (229)
T PRK11081 85 HLK 87 (229)
T ss_pred HHH
Confidence 555
No 151
>PRK07452 DNA polymerase III subunit delta; Validated
Probab=40.07 E-value=1.8e+02 Score=23.68 Aligned_cols=95 Identities=13% Similarity=0.019 Sum_probs=43.3
Q ss_pred cCeEEEEecCCC-----ChhhHhhhhcccCCCCCCcEEEEEcCCh-----hHHhhcC-CCceEeCCCC---ChHHHHHHH
Q 047158 20 HRRVFVVLDNLD-----HIDQLKPLAGENKWFGSGSRIIITNRNE-----HLLKVFE-VDGVCTVPRL---CLGKSFQLF 85 (212)
Q Consensus 20 ~kr~LlvlDdv~-----~~~~~~~l~~~~~~~~~gs~iivTtR~~-----~~~~~~~-~~~~~~l~~l---~~~~a~~Ll 85 (212)
+.+-++|++|.. ..+.++.+...+....+.+.+|+++..+ .....+. ...+...... +.++-...+
T Consensus 60 ~~~rlVvv~~~~~~~~~~~~~~~~L~~~l~~~~~~~~li~~~~~~~d~r~k~~k~l~k~~~~~~~~~~~~~~~~~l~~~i 139 (326)
T PRK07452 60 SGGRLVWLKNSPLCQGCSEELLAELERTLPLIPENTHLLLTNTKKPDGRLKSTKLLQKLAEEKEFSLIPPWDTEGLKQLV 139 (326)
T ss_pred CCceEEEEeCchhhccCCHHHHHHHHHHHcCCCCCcEEEEEeCCCcchHHHHHHHHHHceeEEEecCCCcccHHHHHHHH
Confidence 345567777762 2334455555555444566677654322 1111111 1223333333 334444444
Q ss_pred HHhhcCCCCCChhHHHHHHHHHHHhCCCCch
Q 047158 86 SWHAFRKDKPPQRFMKLSRELLRCAEGLPLE 116 (212)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~i~~~c~glPLa 116 (212)
...+-..... -...++..++..+|+...+
T Consensus 140 ~~~~~~~g~~--i~~~a~~~L~~~~g~dl~~ 168 (326)
T PRK07452 140 ERTAQELGVK--LTPEAAELLAEAVGNDSRR 168 (326)
T ss_pred HHHHHHcCCC--CCHHHHHHHHHHhCccHHH
Confidence 4444222111 1234566677777775554
No 152
>PF02197 RIIa: Regulatory subunit of type II PKA R-subunit; InterPro: IPR003117 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. In the absence of cAMP, Protein Kinase A (PKA) exists as an equimolar tetramer of regulatory (R) and catalytic (C) subunits []. In addition to its role as an inhibitor of the C subunit, the R subunit anchors the holoenzyme to specific intracellular locations and prevents the C subunit from entering the nucleus. All R subunits have a conserved domain structure consisting of the N-terminal dimerization domain, inhibitory region, cAMP-binding domain A and cAMP-binding domain B. R subunits interact with C subunits primarily through the inhibitory site. The cAMP-binding domains show extensive sequence similarity and bind cAMP cooperatively. Two types of regulatory (R) subunits exist - types I and I - which differ in molecular weight, sequence, autophosphorylation cabaility, cellular location and tissue distribution. Types I and II were further sub-divided into alpha and beta subtypes, based mainly on sequence similarity. This entry represents types I-alpha, I-beta, II-alpha and II-beta regulatory subunits of PKA proteins. These subunits contain the dimerisation interface and binding site for A-kinase-anchoring proteins (AKAPs).; GO: 0008603 cAMP-dependent protein kinase regulator activity, 0007165 signal transduction; PDB: 2IZY_E 1R2A_A 1L6E_A 2IZX_B 2KYG_A 2EZW_B 3IM4_B 3IM3_A 4F9K_C 2HWN_B ....
Probab=39.30 E-value=22 Score=19.25 Aligned_cols=17 Identities=12% Similarity=0.685 Sum_probs=12.7
Q ss_pred ecHHHHHHHHHHHhcCC
Q 047158 196 MHDLIRDMKEKLFAKNP 212 (212)
Q Consensus 196 mH~lv~~~a~~~~~~~~ 212 (212)
+++++.++++++.++.|
T Consensus 3 l~~lL~~~~~~vl~~qP 19 (38)
T PF02197_consen 3 LQELLKEFTREVLREQP 19 (38)
T ss_dssp HHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHCC
Confidence 46789999999988876
No 153
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=39.29 E-value=2e+02 Score=23.10 Aligned_cols=71 Identities=8% Similarity=-0.034 Sum_probs=43.7
Q ss_pred cCeEEEEecCCCCh--hhHhhhhcccCCCCCCcEEEEEcCCh-hHHhhcC-CCceEeCCCCChHHHHHHHHHhhc
Q 047158 20 HRRVFVVLDNLDHI--DQLKPLAGENKWFGSGSRIIITNRNE-HLLKVFE-VDGVCTVPRLCLGKSFQLFSWHAF 90 (212)
Q Consensus 20 ~kr~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~iivTtR~~-~~~~~~~-~~~~~~l~~l~~~~a~~Ll~~~~~ 90 (212)
+++=.+|+++++.. ....+++-.+-+..+++.+|++|.+. .+...+- -...+.+...+.....++......
T Consensus 88 g~~KViII~~ae~mt~~AANALLKtLEEPP~~t~fILit~~~~~LLpTIrSRCq~i~~~~p~~~~~~e~~~~~~~ 162 (263)
T PRK06581 88 SGYKVAIIYSAELMNLNAANSCLKILEDAPKNSYIFLITSRAASIISTIRSRCFKINVRSSILHAYNELYSQFIQ 162 (263)
T ss_pred CCcEEEEEechHHhCHHHHHHHHHhhcCCCCCeEEEEEeCChhhCchhHhhceEEEeCCCCCHHHHHHHHHHhcc
Confidence 46668889999854 34566665555555677776655544 3333322 234577777777777776665553
No 154
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=39.05 E-value=46 Score=25.58 Aligned_cols=38 Identities=32% Similarity=0.562 Sum_probs=23.9
Q ss_pred HhccC---eEEEEecCCCC--hhhHhhhhcccCCCCCCcEEEEEcC
Q 047158 17 RLLHR---RVFVVLDNLDH--IDQLKPLAGENKWFGSGSRIIITNR 57 (212)
Q Consensus 17 ~L~~k---r~LlvlDdv~~--~~~~~~l~~~~~~~~~gs~iivTtR 57 (212)
+++|+ +.+||+|.+-+ ..++..++.. .+.||++|++--
T Consensus 112 ~iRGrt~~~~~iIvDEaQN~t~~~~k~ilTR---~g~~skii~~GD 154 (205)
T PF02562_consen 112 FIRGRTFDNAFIIVDEAQNLTPEELKMILTR---IGEGSKIIITGD 154 (205)
T ss_dssp GGTT--B-SEEEEE-SGGG--HHHHHHHHTT---B-TT-EEEEEE-
T ss_pred hhcCccccceEEEEecccCCCHHHHHHHHcc---cCCCcEEEEecC
Confidence 34554 56999999965 5577777643 457999999873
No 155
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=38.72 E-value=80 Score=24.09 Aligned_cols=61 Identities=13% Similarity=0.124 Sum_probs=33.7
Q ss_pred HHHHHhccCeEEEEecCCCC---hhhHhhhhcccCCC-CCCcEEEEEcCChhHHhhcCCCceEeCC
Q 047158 13 MMSSRLLHRRVFVVLDNLDH---IDQLKPLAGENKWF-GSGSRIIITNRNEHLLKVFEVDGVCTVP 74 (212)
Q Consensus 13 ~l~~~L~~kr~LlvlDdv~~---~~~~~~l~~~~~~~-~~gs~iivTtR~~~~~~~~~~~~~~~l~ 74 (212)
.+...|..+.-++++|..-. ....+.+...+... ..|..||++|.+......+ +..++.+.
T Consensus 159 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~~~~~~-~d~i~~~~ 223 (224)
T TIGR02324 159 NIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEEVRELV-ADRVMDVT 223 (224)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh-cceeEecC
Confidence 44555556677999999853 22222222222211 2366799999887766543 24455443
No 156
>PRK10536 hypothetical protein; Provisional
Probab=37.76 E-value=32 Score=27.53 Aligned_cols=38 Identities=21% Similarity=0.414 Sum_probs=26.3
Q ss_pred HhccCe---EEEEecCCCCh--hhHhhhhcccCCCCCCcEEEEEcC
Q 047158 17 RLLHRR---VFVVLDNLDHI--DQLKPLAGENKWFGSGSRIIITNR 57 (212)
Q Consensus 17 ~L~~kr---~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~iivTtR 57 (212)
+++++. -+||+|.+.+. .+...++.. .+.+|++|+|--
T Consensus 169 ymRGrtl~~~~vIvDEaqn~~~~~~k~~ltR---~g~~sk~v~~GD 211 (262)
T PRK10536 169 YMRGRTFENAVVILDEAQNVTAAQMKMFLTR---LGENVTVIVNGD 211 (262)
T ss_pred HhcCCcccCCEEEEechhcCCHHHHHHHHhh---cCCCCEEEEeCC
Confidence 566664 49999999854 455555543 457999998863
No 157
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=37.15 E-value=96 Score=24.18 Aligned_cols=53 Identities=9% Similarity=-0.029 Sum_probs=30.2
Q ss_pred HHHHHhccCeEEEEecCCCC---hhhHhhhhcccCCCCCCcEEEEEcCChhHHhhc
Q 047158 13 MMSSRLLHRRVFVVLDNLDH---IDQLKPLAGENKWFGSGSRIIITNRNEHLLKVF 65 (212)
Q Consensus 13 ~l~~~L~~kr~LlvlDdv~~---~~~~~~l~~~~~~~~~gs~iivTtR~~~~~~~~ 65 (212)
.+...+..+.-+++||.... ......+...+.....+..||++|.+......+
T Consensus 157 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivsh~~~~~~~~ 212 (251)
T PRK14249 157 CIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARA 212 (251)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhh
Confidence 45555666778999998853 222222222221112356788888887766554
No 158
>PF05763 DUF835: Protein of unknown function (DUF835); InterPro: IPR008553 The members of this archaebacterial protein entry are around 250-300 amino acid residues in length. The function of these proteins is not known.
Probab=36.99 E-value=64 Score=23.01 Aligned_cols=54 Identities=13% Similarity=0.196 Sum_probs=34.0
Q ss_pred ccchHHHHHHHHHHhcc-CeEEEEecCCCCh------hhHhhhhcccCCC--CCCcEEEEEcC
Q 047158 4 MESIDRGLNMMSSRLLH-RRVFVVLDNLDHI------DQLKPLAGENKWF--GSGSRIIITNR 57 (212)
Q Consensus 4 ~~~~~~~~~~l~~~L~~-kr~LlvlDdv~~~------~~~~~l~~~~~~~--~~gs~iivTtR 57 (212)
-.++..+.+.+.+.++. +.-.+++|++... +..-+++..+.+. -+++.+|++.-
T Consensus 57 Pt~L~~l~~~i~~fl~~~~~~vViiD~lEYL~l~NgF~~v~KFL~~LkD~~~~~~~~lIl~~~ 119 (136)
T PF05763_consen 57 PTNLHKLLDTIVRFLKENGNGVVIIDGLEYLILENGFESVLKFLASLKDYALLNNGTLILVVD 119 (136)
T ss_pred chhhHHHHHHHHHHHHhCCCcEEEEecHHHHHHHcCHHHHHHHHHHhHHHeeccCCEEEEEEC
Confidence 35667778888888887 5679999999632 2333444444432 24565666553
No 159
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=36.74 E-value=1.1e+02 Score=24.36 Aligned_cols=57 Identities=16% Similarity=0.160 Sum_probs=29.3
Q ss_pred chHHHHHHHHHHhccCeEEEEecCCC---Chh---hHhhhhcccCCCC-CCcEEEEEcCChhHHhh
Q 047158 6 SIDRGLNMMSSRLLHRRVFVVLDNLD---HID---QLKPLAGENKWFG-SGSRIIITNRNEHLLKV 64 (212)
Q Consensus 6 ~~~~~~~~l~~~L~~kr~LlvlDdv~---~~~---~~~~l~~~~~~~~-~gs~iivTtR~~~~~~~ 64 (212)
++.++.+.++. ...||+|.+||.. +.. .++.++..--... .+-.|..||..+++.+.
T Consensus 93 ~l~~l~~~l~~--~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSNRRHLv~E 156 (249)
T PF05673_consen 93 DLPELLDLLRD--RPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSNRRHLVPE 156 (249)
T ss_pred cHHHHHHHHhc--CCCCEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecchhhccch
Confidence 34444444442 3469999999985 222 2344433222122 34456667765666544
No 160
>PF13545 HTH_Crp_2: Crp-like helix-turn-helix domain; PDB: 3LA2_A 3LA3_B 3LA7_A 3B02_A 3E97_A 2H6C_B 1OMI_A 2BGC_H 2BEO_A 2GAU_A ....
Probab=36.58 E-value=26 Score=21.56 Aligned_cols=43 Identities=9% Similarity=0.149 Sum_probs=34.1
Q ss_pred CCCHHHHHHhhhhcCCcchhhHHHHhhccCceecCCCcEEecHH
Q 047158 156 GMDKDYVLKILQGCGFSSEIVFFVLTQRCLIVIDEDNRLKMHDL 199 (212)
Q Consensus 156 ~~~~~~l~~~~~~~~~~~~~~l~~L~~~sll~~~~~~~~~mH~l 199 (212)
+++.+.+..+.+...-.....++.|.+.++|+.. .+.+.++|.
T Consensus 28 ~lt~~~iA~~~g~sr~tv~r~l~~l~~~g~I~~~-~~~i~I~d~ 70 (76)
T PF13545_consen 28 PLTQEEIADMLGVSRETVSRILKRLKDEGIIEVK-RGKIIILDP 70 (76)
T ss_dssp ESSHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE-TTEEEESSH
T ss_pred cCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEc-CCEEEECCH
Confidence 3788888888777665566789999999999976 567888875
No 161
>CHL00195 ycf46 Ycf46; Provisional
Probab=35.90 E-value=2.5e+02 Score=24.81 Aligned_cols=104 Identities=17% Similarity=0.158 Sum_probs=56.9
Q ss_pred HHHHHHHHHhccCeEEEEecCCCCh----h---hHhhhhcccCCCCCCcEEEEEcCChhHHhhcCC-CceEeCCCCChHH
Q 047158 9 RGLNMMSSRLLHRRVFVVLDNLDHI----D---QLKPLAGENKWFGSGSRIIITNRNEHLLKVFEV-DGVCTVPRLCLGK 80 (212)
Q Consensus 9 ~~~~~l~~~L~~kr~LlvlDdv~~~----~---~~~~l~~~~~~~~~gs~iivTtR~~~~~~~~~~-~~~~~l~~l~~~~ 80 (212)
++.+.+.+.-.....++||-|...- . .+..+..... ..+. .||+.+-...+...+.. ..++.++..+.+|
T Consensus 69 ~al~~i~~~~~~~~~~~vl~d~h~~~~~~~~~r~l~~l~~~~~-~~~~-~~i~~~~~~~~p~el~~~~~~~~~~lP~~~e 146 (489)
T CHL00195 69 QALEFIEKLTPETPALFLLKDFNRFLNDISISRKLRNLSRILK-TQPK-TIIIIASELNIPKELKDLITVLEFPLPTESE 146 (489)
T ss_pred HHHHHHHhcCCCCCcEEEEecchhhhcchHHHHHHHHHHHHHH-hCCC-EEEEEcCCCCCCHHHHhceeEEeecCcCHHH
Confidence 3334333332333578888887432 2 2333333222 2233 46666655444443332 3356788888888
Q ss_pred HHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCCCch
Q 047158 81 SFQLFSWHAFRKDKPPQRFMKLSRELLRCAEGLPLE 116 (212)
Q Consensus 81 a~~Ll~~~~~~~~~~~~~~~~~~~~i~~~c~glPLa 116 (212)
-.+++.......... -......++++.|.|+++.
T Consensus 147 i~~~l~~~~~~~~~~--~~~~~~~~l~~~~~gls~~ 180 (489)
T CHL00195 147 IKKELTRLIKSLNIK--IDSELLENLTRACQGLSLE 180 (489)
T ss_pred HHHHHHHHHHhcCCC--CCHHHHHHHHHHhCCCCHH
Confidence 888886655321111 1234457899999999998
No 162
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=35.84 E-value=1.3e+02 Score=22.61 Aligned_cols=59 Identities=15% Similarity=0.091 Sum_probs=33.0
Q ss_pred HHHHHhccCeEEEEecCCCC---hhhHhhhhcccCCCCCCcEEEEEcCChhHHhhcCCCceEeC
Q 047158 13 MMSSRLLHRRVFVVLDNLDH---IDQLKPLAGENKWFGSGSRIIITNRNEHLLKVFEVDGVCTV 73 (212)
Q Consensus 13 ~l~~~L~~kr~LlvlDdv~~---~~~~~~l~~~~~~~~~gs~iivTtR~~~~~~~~~~~~~~~l 73 (212)
.+...+..+.=++++|+... ....+.+...+.....|..||++|.+...... ...++.+
T Consensus 135 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~~--~d~v~~l 196 (207)
T cd03369 135 CLARALLKRPRVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTIID--YDKILVM 196 (207)
T ss_pred HHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhh--CCEEEEE
Confidence 45555566777888998863 23223333222222236678888887776543 3444444
No 163
>PF13412 HTH_24: Winged helix-turn-helix DNA-binding; PDB: 1I1G_B 2IA0_B 3I4P_A 2GQQ_A 2L4A_A 2CFX_B 2DBB_B 2EFO_A 2EFQ_A 2PN6_A ....
Probab=35.83 E-value=45 Score=18.52 Aligned_cols=45 Identities=9% Similarity=0.029 Sum_probs=26.3
Q ss_pred hhhhHHhhhhccCCCCCHHHHHHhhhhcCCcchhhHHHHhhccCce
Q 047158 142 EEKNVFMDIAHLFVGMDKDYVLKILQGCGFSSEIVFFVLTQRCLIV 187 (212)
Q Consensus 142 ~~~~~~~~la~f~~~~~~~~l~~~~~~~~~~~~~~l~~L~~~sll~ 187 (212)
..++.+.++.--| +++...+...+.-..-....+++.|.+.++|+
T Consensus 4 ~~~~Il~~l~~~~-~~t~~ela~~~~is~~tv~~~l~~L~~~g~I~ 48 (48)
T PF13412_consen 4 TQRKILNYLRENP-RITQKELAEKLGISRSTVNRYLKKLEEKGLIE 48 (48)
T ss_dssp HHHHHHHHHHHCT-TS-HHHHHHHHTS-HHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHcC-CCCHHHHHHHhCCCHHHHHHHHHHHHHCcCcC
Confidence 3344444444422 37777777766554444566789999988874
No 164
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=35.61 E-value=1.3e+02 Score=22.99 Aligned_cols=60 Identities=15% Similarity=0.168 Sum_probs=34.3
Q ss_pred HHHHHHhccCeEEEEecCCCCh---hhHhhhhcccCCCCCCcEEEEEcCChhHHhhcCCCceEeC
Q 047158 12 NMMSSRLLHRRVFVVLDNLDHI---DQLKPLAGENKWFGSGSRIIITNRNEHLLKVFEVDGVCTV 73 (212)
Q Consensus 12 ~~l~~~L~~kr~LlvlDdv~~~---~~~~~l~~~~~~~~~gs~iivTtR~~~~~~~~~~~~~~~l 73 (212)
-.+...|..+.=+++||..... ...+.+...+.....|..||++|.+...... +.+++.+
T Consensus 148 v~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~--~d~i~~l 210 (229)
T cd03254 148 LAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIKN--ADKILVL 210 (229)
T ss_pred HHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhh--CCEEEEE
Confidence 3556666677889999998632 2222222222211235678888888776643 4555544
No 165
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=35.61 E-value=1.2e+02 Score=23.38 Aligned_cols=59 Identities=14% Similarity=0.245 Sum_probs=33.1
Q ss_pred HHHHHhccCeEEEEecCCCCh---hhHhhhhcccCCCCCCcEEEEEcCChhHHhhcCCCceEeC
Q 047158 13 MMSSRLLHRRVFVVLDNLDHI---DQLKPLAGENKWFGSGSRIIITNRNEHLLKVFEVDGVCTV 73 (212)
Q Consensus 13 ~l~~~L~~kr~LlvlDdv~~~---~~~~~l~~~~~~~~~gs~iivTtR~~~~~~~~~~~~~~~l 73 (212)
.+...+..+.=+++||..... ...+.+...+.....|..||++|.+...... +.+++.+
T Consensus 148 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~--~d~v~~l 209 (237)
T cd03252 148 AIARALIHNPRILIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVKN--ADRIIVM 209 (237)
T ss_pred HHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHh--CCEEEEE
Confidence 344555566779999998632 2222222222212236679999988877643 3444444
No 166
>PF01937 DUF89: Protein of unknown function DUF89; InterPro: IPR002791 This entry contains uncharacterised proteins. Those with structural information consist of two domains: an all-alpha domain with a 3-helical bundle fold, and an alpha-beta domain in 3 layers, alpha/beta/alpha. ; PDB: 2FFJ_B 1XFI_A 2Q40_A 2G8L_B 3PT1_A.
Probab=35.46 E-value=56 Score=27.36 Aligned_cols=66 Identities=23% Similarity=0.197 Sum_probs=38.8
Q ss_pred HHHHHh---ccCeEEEEecCCC-ChhhHhh-hhcccCCCCCCcEEEEEcCChhHHhhcCCCceEeCCCCChHHHHHHHHH
Q 047158 13 MMSSRL---LHRRVFVVLDNLD-HIDQLKP-LAGENKWFGSGSRIIITNRNEHLLKVFEVDGVCTVPRLCLGKSFQLFSW 87 (212)
Q Consensus 13 ~l~~~L---~~kr~LlvlDdv~-~~~~~~~-l~~~~~~~~~gs~iivTtR~~~~~~~~~~~~~~~l~~l~~~~a~~Ll~~ 87 (212)
.+.+.| +.+++++|+||+- +.- .+. +...+...+.|++|++..|.. ++-+...+.+|+..++..
T Consensus 175 ~~~~~l~~~~~~~v~~v~DNaG~Elv-~D~ll~~~L~~~~~~~~V~~~vK~~----------P~~vnDvT~~D~~~~l~~ 243 (355)
T PF01937_consen 175 EFWEKLENKKAKRVDIVLDNAGFELV-FDLLLAEFLLESGPGSKVVFHVKGI----------PWFVNDVTMEDAEWLLER 243 (355)
T ss_dssp HHHHHHCTCHTSEEEEE--BTTHHHH-HHHHHHHHHHHTCTTSEEEEEEBSS------------TTTB-BHHHHHHHHHH
T ss_pred HHHHHhhccCCCEEEEEEcCCCcHHH-hhHHHHHHHHHhCCCCeEEEEECCC----------CCeeccCcHHHHHHHHHH
Confidence 344444 5679999999998 421 111 222233356789999888743 244666788888877776
Q ss_pred hh
Q 047158 88 HA 89 (212)
Q Consensus 88 ~~ 89 (212)
..
T Consensus 244 l~ 245 (355)
T PF01937_consen 244 LA 245 (355)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 167
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=35.32 E-value=1.1e+02 Score=23.88 Aligned_cols=54 Identities=13% Similarity=0.019 Sum_probs=30.9
Q ss_pred HHHHHHHhccCeEEEEecCCCC---hhhHhhhhcccCCCCCCcEEEEEcCChhHHhh
Q 047158 11 LNMMSSRLLHRRVFVVLDNLDH---IDQLKPLAGENKWFGSGSRIIITNRNEHLLKV 64 (212)
Q Consensus 11 ~~~l~~~L~~kr~LlvlDdv~~---~~~~~~l~~~~~~~~~gs~iivTtR~~~~~~~ 64 (212)
.-.+...+..+.=+++||.... ...-..+...+.....|..||++|.+......
T Consensus 150 rv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~ 206 (246)
T PRK14269 150 RLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKR 206 (246)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHh
Confidence 3456666677778899999853 22222222222211225668888888776544
No 168
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=35.24 E-value=94 Score=24.19 Aligned_cols=50 Identities=12% Similarity=0.166 Sum_probs=29.7
Q ss_pred HHHHHhccCeEEEEecCCCC---hh---hHhhhhcccCCCCCCcEEEEEcCChhHHhhc
Q 047158 13 MMSSRLLHRRVFVVLDNLDH---ID---QLKPLAGENKWFGSGSRIIITNRNEHLLKVF 65 (212)
Q Consensus 13 ~l~~~L~~kr~LlvlDdv~~---~~---~~~~l~~~~~~~~~gs~iivTtR~~~~~~~~ 65 (212)
.+...+..+.-++++|..-. .. .+..++..+. .+..||++|.+......+
T Consensus 155 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~---~~~tii~~sh~~~~~~~~ 210 (249)
T PRK14253 155 CIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELK---KNYTIVIVTHSMQQARRI 210 (249)
T ss_pred HHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh---cCCeEEEEecCHHHHHHh
Confidence 45555666777999999853 22 2223333332 235688888887765553
No 169
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=35.22 E-value=85 Score=24.28 Aligned_cols=53 Identities=9% Similarity=0.156 Sum_probs=29.9
Q ss_pred HHHHHhccCeEEEEecCCCCh---hhHhhhhcccCCCCCCcEEEEEcCChhHHhhc
Q 047158 13 MMSSRLLHRRVFVVLDNLDHI---DQLKPLAGENKWFGSGSRIIITNRNEHLLKVF 65 (212)
Q Consensus 13 ~l~~~L~~kr~LlvlDdv~~~---~~~~~l~~~~~~~~~gs~iivTtR~~~~~~~~ 65 (212)
.+...+..+.=+++||..-.. .....+...+.....+..||++|.+...+..+
T Consensus 153 ~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~ 208 (242)
T TIGR03411 153 EIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFVRSI 208 (242)
T ss_pred HHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHh
Confidence 455556667779999998632 22222222221111245689999887766543
No 170
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=35.20 E-value=2.6e+02 Score=26.04 Aligned_cols=95 Identities=18% Similarity=0.125 Sum_probs=52.2
Q ss_pred ccCeEEEEecCCCChh--------------hHhhhhcccCC--CCCCcEEEEEcCChhHHhhc-----CCCceEeCCCCC
Q 047158 19 LHRRVFVVLDNLDHID--------------QLKPLAGENKW--FGSGSRIIITNRNEHLLKVF-----EVDGVCTVPRLC 77 (212)
Q Consensus 19 ~~kr~LlvlDdv~~~~--------------~~~~l~~~~~~--~~~gs~iivTtR~~~~~~~~-----~~~~~~~l~~l~ 77 (212)
......|++|+++... ....++..+.. ...+--||.||...+..... .....+.++..+
T Consensus 544 ~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd 623 (733)
T TIGR01243 544 QAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPDILDPALLRPGRFDRLILVPPPD 623 (733)
T ss_pred hcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcC
Confidence 4557899999996321 12223332221 12344566677655443221 135678899999
Q ss_pred hHHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCCCch
Q 047158 78 LGKSFQLFSWHAFRKDKPPQRFMKLSRELLRCAEGLPLE 116 (212)
Q Consensus 78 ~~~a~~Ll~~~~~~~~~~~~~~~~~~~~i~~~c~glPLa 116 (212)
.++-.++|..+..+..... . .....+++.+.|+--|
T Consensus 624 ~~~R~~i~~~~~~~~~~~~-~--~~l~~la~~t~g~sga 659 (733)
T TIGR01243 624 EEARKEIFKIHTRSMPLAE-D--VDLEELAEMTEGYTGA 659 (733)
T ss_pred HHHHHHHHHHHhcCCCCCc-c--CCHHHHHHHcCCCCHH
Confidence 9999999876553222111 1 1134566667765543
No 171
>PRK10163 DNA-binding transcriptional repressor AllR; Provisional
Probab=34.48 E-value=1.6e+02 Score=23.46 Aligned_cols=52 Identities=8% Similarity=-0.132 Sum_probs=36.1
Q ss_pred CCCHHHHHHhhhhcCCcchhhHHHHhhccCceecC-CCcEEecHHHHHHHHHH
Q 047158 156 GMDKDYVLKILQGCGFSSEIVFFVLTQRCLIVIDE-DNRLKMHDLIRDMKEKL 207 (212)
Q Consensus 156 ~~~~~~l~~~~~~~~~~~~~~l~~L~~~sll~~~~-~~~~~mH~lv~~~a~~~ 207 (212)
+.+...+.+......-.....+..|++.+++..++ .++|++=.-+..++...
T Consensus 40 ~~tl~eIa~~lglpkStv~RlL~tL~~~G~l~~~~~~~~Y~lG~~l~~Lg~~~ 92 (271)
T PRK10163 40 SSSVSDISLNLDLPLSTTFRLLKVLQAADFVYQDSQLGWWHIGLGVFNVGAAY 92 (271)
T ss_pred CcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEcCCCCeEEecHHHHHHHHHH
Confidence 46666666666555555677899999999998765 56687666555555443
No 172
>PRK08116 hypothetical protein; Validated
Probab=33.95 E-value=39 Score=27.04 Aligned_cols=42 Identities=17% Similarity=0.258 Sum_probs=21.7
Q ss_pred HHhccCeEEEEecCCC--ChhhH--hhhhcccCC-CCCCcEEEEEcCC
Q 047158 16 SRLLHRRVFVVLDNLD--HIDQL--KPLAGENKW-FGSGSRIIITNRN 58 (212)
Q Consensus 16 ~~L~~kr~LlvlDdv~--~~~~~--~~l~~~~~~-~~~gs~iivTtR~ 58 (212)
+.+.+-. ||||||+. ....| ..+...+.. ..+|..+|+||..
T Consensus 174 ~~l~~~d-lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~ 220 (268)
T PRK08116 174 RSLVNAD-LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNL 220 (268)
T ss_pred HHhcCCC-EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 3344334 89999993 22223 222222211 1245568999864
No 173
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=33.76 E-value=1.6e+02 Score=22.35 Aligned_cols=59 Identities=19% Similarity=0.301 Sum_probs=32.2
Q ss_pred HHHHHhccCeEEEEecCCCC---hhhHhhhhcccCCCCCCcEEEEEcCChhHHhhcCCCceEeC
Q 047158 13 MMSSRLLHRRVFVVLDNLDH---IDQLKPLAGENKWFGSGSRIIITNRNEHLLKVFEVDGVCTV 73 (212)
Q Consensus 13 ~l~~~L~~kr~LlvlDdv~~---~~~~~~l~~~~~~~~~gs~iivTtR~~~~~~~~~~~~~~~l 73 (212)
.+...+..+.-+++||..-. ......+...+.....+..||++|.+..... . +++++.+
T Consensus 150 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~-~-~d~v~~l 211 (220)
T cd03245 150 ALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLLD-L-VDRIIVM 211 (220)
T ss_pred HHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHH-h-CCEEEEE
Confidence 45555666777999998853 2222222222222222356899998887653 3 3455544
No 174
>PF01978 TrmB: Sugar-specific transcriptional regulator TrmB; InterPro: IPR002831 TrmB, is a protein of 38,800 apparent molecular weight, that is involved in the maltose-specific regulation of the trehalose/maltose ABC transport operon in Thermococcus litoralis. TrmB has been shown to be a maltose-specific repressor, and this inhibition is counteracted by maltose and trehalose. TrmB binds maltose and trehalose half-maximally at 20 uM and 0.5 mM sugar concentration, respectively []. Other members of this family are annotated as either transcriptional regulators or hypothetical proteins. ; PDB: 2D1H_A 3QPH_A 1SFX_A.
Probab=33.59 E-value=16 Score=22.22 Aligned_cols=51 Identities=12% Similarity=0.107 Sum_probs=32.4
Q ss_pred CchhhhHHhhhhccCCCCCHHHHHHhhhhcCCcchhhHHHHhhccCceecCC
Q 047158 140 DDEEKNVFMDIAHLFVGMDKDYVLKILQGCGFSSEIVFFVLTQRCLIVIDED 191 (212)
Q Consensus 140 ~~~~~~~~~~la~f~~~~~~~~l~~~~~~~~~~~~~~l~~L~~~sll~~~~~ 191 (212)
++...+++.++.. .++.+...+.....-..-.....++.|.++|+|+....
T Consensus 7 s~~E~~vy~~Ll~-~~~~t~~eIa~~l~i~~~~v~~~L~~L~~~GlV~~~~~ 57 (68)
T PF01978_consen 7 SENEAKVYLALLK-NGPATAEEIAEELGISRSTVYRALKSLEEKGLVEREEG 57 (68)
T ss_dssp HHHHHHHHHHHHH-HCHEEHHHHHHHHTSSHHHHHHHHHHHHHTTSEEEEEE
T ss_pred CHHHHHHHHHHHH-cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEcC
Confidence 4455555655541 12366666666555444445567999999999998753
No 175
>PF09339 HTH_IclR: IclR helix-turn-helix domain; InterPro: IPR005471 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities. One of these subfamilies, called 'iclR', groups several proteins including: gylR, a possible activator protein for the gylABX glycerol operon in Streptomyces. iclR, the repressor of the acetate operon (also known as glyoxylate bypass operon) in Escherichia coli and Salmonella typhimurium. These proteins have a Helix-Turn-Helix motif at the N terminus that is similar to that of other DNA-binding proteins [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1MKM_A 3MQ0_A 3R4K_A 2G7U_C 2O0Y_C 2XRO_F 2XRN_B 2IA2_D.
Probab=33.54 E-value=38 Score=19.33 Aligned_cols=36 Identities=8% Similarity=-0.080 Sum_probs=24.1
Q ss_pred CCCCCHHHHHHhhhhcCCcchhhHHHHhhccCceec
Q 047158 154 FVGMDKDYVLKILQGCGFSSEIVFFVLTQRCLIVID 189 (212)
Q Consensus 154 ~~~~~~~~l~~~~~~~~~~~~~~l~~L~~~sll~~~ 189 (212)
+.+.+...+.+......-.....+..|.+.++++.+
T Consensus 16 ~~~~t~~eia~~~gl~~stv~r~L~tL~~~g~v~~d 51 (52)
T PF09339_consen 16 GGPLTLSEIARALGLPKSTVHRLLQTLVEEGYVERD 51 (52)
T ss_dssp BSCEEHHHHHHHHTS-HHHHHHHHHHHHHTTSEEEC
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHHHHHCcCeecC
Confidence 344566666666554444456679999999999865
No 176
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=33.37 E-value=1.8e+02 Score=23.97 Aligned_cols=88 Identities=14% Similarity=0.143 Sum_probs=50.6
Q ss_pred EEEecCCCCh--hhHhhhhcccCCCCCCcEEEEEcCCh-hHHhhcC-CCceEeCCCCChHHHHHHHHHhhcCCCCCChhH
Q 047158 24 FVVLDNLDHI--DQLKPLAGENKWFGSGSRIIITNRNE-HLLKVFE-VDGVCTVPRLCLGKSFQLFSWHAFRKDKPPQRF 99 (212)
Q Consensus 24 LlvlDdv~~~--~~~~~l~~~~~~~~~gs~iivTtR~~-~~~~~~~-~~~~~~l~~l~~~~a~~Ll~~~~~~~~~~~~~~ 99 (212)
++|+-.+++. +.-.++........+.|++|+...+. .+...+. -.-.+.++..+.+|-...+.+..-......+
T Consensus 130 vvvi~ead~LT~dAQ~aLRRTMEkYs~~~RlIl~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~lp-- 207 (351)
T KOG2035|consen 130 VVVINEADELTRDAQHALRRTMEKYSSNCRLILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQLP-- 207 (351)
T ss_pred EEEEechHhhhHHHHHHHHHHHHHHhcCceEEEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcccCc--
Confidence 4556666542 22333333333344577777643211 1112211 1335789999999999999877744443333
Q ss_pred HHHHHHHHHHhCCC
Q 047158 100 MKLSRELLRCAEGL 113 (212)
Q Consensus 100 ~~~~~~i~~~c~gl 113 (212)
++.+++|+++++|.
T Consensus 208 ~~~l~rIa~kS~~n 221 (351)
T KOG2035|consen 208 KELLKRIAEKSNRN 221 (351)
T ss_pred HHHHHHHHHHhccc
Confidence 57788999888773
No 177
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=33.20 E-value=1.1e+02 Score=23.90 Aligned_cols=52 Identities=6% Similarity=0.006 Sum_probs=29.3
Q ss_pred HHHHHhccCeEEEEecCCCC---hhhHhhhhcccCCCCCCcEEEEEcCChhHHhh
Q 047158 13 MMSSRLLHRRVFVVLDNLDH---IDQLKPLAGENKWFGSGSRIIITNRNEHLLKV 64 (212)
Q Consensus 13 ~l~~~L~~kr~LlvlDdv~~---~~~~~~l~~~~~~~~~gs~iivTtR~~~~~~~ 64 (212)
.+...+..+.-+++||..-. ......+...+.....|..||++|.+......
T Consensus 156 ~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~ 210 (250)
T PRK14247 156 CIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAAR 210 (250)
T ss_pred HHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 44555566778899999853 22222222222211225668899988776544
No 178
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=33.17 E-value=93 Score=27.90 Aligned_cols=68 Identities=10% Similarity=0.080 Sum_probs=41.5
Q ss_pred cchHHHHHHHHHHhccCeEEEEecCCCChhh---HhhhhcccCCCCCCcEEEEEcCChhHHhhcCCCceEeCC
Q 047158 5 ESIDRGLNMMSSRLLHRRVFVVLDNLDHIDQ---LKPLAGENKWFGSGSRIIITNRNEHLLKVFEVDGVCTVP 74 (212)
Q Consensus 5 ~~~~~~~~~l~~~L~~kr~LlvlDdv~~~~~---~~~l~~~~~~~~~gs~iivTtR~~~~~~~~~~~~~~~l~ 74 (212)
.+-....-.|.+.|-.+.-||.||+--+.-+ ...|-..+.....+ .++|++|.++....+ +.+++++.
T Consensus 223 SgGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~~-~lVi~sh~QDfln~v-CT~Ii~l~ 293 (614)
T KOG0927|consen 223 SGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDRI-ILVIVSHSQDFLNGV-CTNIIHLD 293 (614)
T ss_pred CchHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccCc-eEEEEecchhhhhhH-hhhhheec
Confidence 3334445567777778999999999875433 23333333333333 689999998877665 23444443
No 179
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=33.13 E-value=1.2e+02 Score=24.87 Aligned_cols=45 Identities=20% Similarity=0.141 Sum_probs=29.6
Q ss_pred eEeCCCCChHHHHHHHHHhhcCCCCCC-hhHHHHHHHHHHHhCCCC
Q 047158 70 VCTVPRLCLGKSFQLFSWHAFRKDKPP-QRFMKLSRELLRCAEGLP 114 (212)
Q Consensus 70 ~~~l~~l~~~~a~~Ll~~~~~~~~~~~-~~~~~~~~~i~~~c~glP 114 (212)
.+++++++.+|+..++..+.-.+--.. ...+...+++....+|.|
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp 303 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNP 303 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCH
Confidence 689999999999999987763332211 122334555666667777
No 180
>PRK11920 rirA iron-responsive transcriptional regulator; Reviewed
Probab=32.94 E-value=72 Score=23.13 Aligned_cols=54 Identities=7% Similarity=-0.097 Sum_probs=31.8
Q ss_pred hhhhHHhhhhccCCC-CCHHHHHHhhhhcCCcchhhHHHHhhccCceecC--CCcEE
Q 047158 142 EEKNVFMDIAHLFVG-MDKDYVLKILQGCGFSSEIVFFVLTQRCLIVIDE--DNRLK 195 (212)
Q Consensus 142 ~~~~~~~~la~f~~~-~~~~~l~~~~~~~~~~~~~~l~~L~~~sll~~~~--~~~~~ 195 (212)
..-+++.++|..+.+ ++...+.....-..-.-+..+..|...|+|.... +|.|+
T Consensus 9 YAlr~L~~LA~~~~~~~s~~eIA~~~~is~~~L~kIl~~L~~aGlv~S~rG~~GGy~ 65 (153)
T PRK11920 9 YAIRMLMYCAANDGKLSRIPEIARAYGVSELFLFKILQPLVEAGLVETVRGRNGGVR 65 (153)
T ss_pred HHHHHHHHHHhCCCCcCcHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeecCCCCCee
Confidence 344566778766554 5555555443332222344688899999998654 34443
No 181
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=32.87 E-value=1e+02 Score=23.41 Aligned_cols=53 Identities=13% Similarity=0.099 Sum_probs=30.8
Q ss_pred HHHHHhccCeEEEEecCCCCh---hhHhhhhcccCCCCCCcEEEEEcCChhHHhhc
Q 047158 13 MMSSRLLHRRVFVVLDNLDHI---DQLKPLAGENKWFGSGSRIIITNRNEHLLKVF 65 (212)
Q Consensus 13 ~l~~~L~~kr~LlvlDdv~~~---~~~~~l~~~~~~~~~gs~iivTtR~~~~~~~~ 65 (212)
.+...+..+.-++++|..... ...+.+...+.....+..||++|.+...+..+
T Consensus 143 ~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~ 198 (220)
T cd03263 143 SLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEAL 198 (220)
T ss_pred HHHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHh
Confidence 455566677889999998632 22222222222112235689999888766543
No 182
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=32.69 E-value=2.3e+02 Score=25.51 Aligned_cols=79 Identities=6% Similarity=0.045 Sum_probs=47.6
Q ss_pred HHHHHhccC--eEEEEecCCCCh---hhHhhhhcccCCCCCCcEEEEEcCChhHHhhcCCC-----------ceEeCCCC
Q 047158 13 MMSSRLLHR--RVFVVLDNLDHI---DQLKPLAGENKWFGSGSRIIITNRNEHLLKVFEVD-----------GVCTVPRL 76 (212)
Q Consensus 13 ~l~~~L~~k--r~LlvlDdv~~~---~~~~~l~~~~~~~~~gs~iivTtR~~~~~~~~~~~-----------~~~~l~~l 76 (212)
.++..+.++ .--||||.|+.. ..-..+...+..-+.++.||+.|..+.|+.....+ ....+..|
T Consensus 443 Alk~i~~~~~~~ptlIFDEVD~GIsG~~A~aVg~~L~~Ls~~~QVl~VTHlPQVAa~ad~H~~V~K~~~~~~T~s~V~~L 522 (557)
T COG0497 443 ALKVILSRKDDTPTLIFDEVDTGISGRVAQAVGKKLRRLSEHHQVLCVTHLPQVAAMADTHFLVEKESEDGRTESRVRPL 522 (557)
T ss_pred HHHHHHhccCCCCeEEEecccCCCChHHHHHHHHHHHHHhcCceEEEEecHHHHHhhhcceEEEEEecCCCceEEeeeeC
Confidence 345555554 348999999842 22233333333345678899999999998875321 13456667
Q ss_pred ChHHHHHHHHHhhcC
Q 047158 77 CLGKSFQLFSWHAFR 91 (212)
Q Consensus 77 ~~~~a~~Ll~~~~~~ 91 (212)
+.++=.+=+-++..|
T Consensus 523 ~~eeRveEiARMl~G 537 (557)
T COG0497 523 DKEERVEEIARMLGG 537 (557)
T ss_pred CHhHHHHHHHHHhcC
Confidence 766655555555544
No 183
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=32.62 E-value=2e+02 Score=24.80 Aligned_cols=69 Identities=12% Similarity=0.139 Sum_probs=40.9
Q ss_pred eEEEEecCCCChh---hH-hhhhcccCC-CCCCcEEEEEcCCh---------hHHhhcCCCceEeCCCCChHHHHHHHHH
Q 047158 22 RVFVVLDNLDHID---QL-KPLAGENKW-FGSGSRIIITNRNE---------HLLKVFEVDGVCTVPRLCLGKSFQLFSW 87 (212)
Q Consensus 22 r~LlvlDdv~~~~---~~-~~l~~~~~~-~~~gs~iivTtR~~---------~~~~~~~~~~~~~l~~l~~~~a~~Ll~~ 87 (212)
-=++++||++-.. .+ +.+.-.+.. ...|..||+|++.. .+...+...-++.+.+++.+.-..++.+
T Consensus 176 ~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~k 255 (408)
T COG0593 176 LDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILRK 255 (408)
T ss_pred cCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHHHH
Confidence 3488899996321 11 112111111 12344799998543 2222233456799999999999999988
Q ss_pred hhc
Q 047158 88 HAF 90 (212)
Q Consensus 88 ~~~ 90 (212)
.+-
T Consensus 256 ka~ 258 (408)
T COG0593 256 KAE 258 (408)
T ss_pred HHH
Confidence 663
No 184
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=32.61 E-value=1.1e+02 Score=23.89 Aligned_cols=60 Identities=8% Similarity=0.014 Sum_probs=32.1
Q ss_pred HHHHHhccCeEEEEecCCCC---hhhHhhhhcccCCCCCCcEEEEEcCChhHHhhcCCCceEeC
Q 047158 13 MMSSRLLHRRVFVVLDNLDH---IDQLKPLAGENKWFGSGSRIIITNRNEHLLKVFEVDGVCTV 73 (212)
Q Consensus 13 ~l~~~L~~kr~LlvlDdv~~---~~~~~~l~~~~~~~~~gs~iivTtR~~~~~~~~~~~~~~~l 73 (212)
.+...|..+.=+++||..-. ......+...+.....+..||++|.+....... +.+++.+
T Consensus 156 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~-~d~v~~l 218 (250)
T PRK14245 156 CIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVTHNMQQAARV-SDKTAFF 218 (250)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhh-CCEEEEE
Confidence 45555666777899998853 222222222222112245688888887765443 2344443
No 185
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=32.26 E-value=1.2e+02 Score=24.13 Aligned_cols=44 Identities=7% Similarity=0.134 Sum_probs=26.5
Q ss_pred CeEEEEecCCCC---hhhHhhhhcccCCCCCCcEEEEEcCChhHHhh
Q 047158 21 RRVFVVLDNLDH---IDQLKPLAGENKWFGSGSRIIITNRNEHLLKV 64 (212)
Q Consensus 21 kr~LlvlDdv~~---~~~~~~l~~~~~~~~~gs~iivTtR~~~~~~~ 64 (212)
+.-++++|.... ......+...+.....+..||++|.+..+...
T Consensus 192 ~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~~~tii~isH~~~~~~~ 238 (276)
T cd03241 192 AVPTLIFDEIDTGISGEVAQAVGKKLKELSRSHQVLCITHLPQVAAM 238 (276)
T ss_pred CCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEechHHHHHh
Confidence 777888998853 33333333322222235679999998876543
No 186
>smart00345 HTH_GNTR helix_turn_helix gluconate operon transcriptional repressor.
Probab=32.19 E-value=95 Score=17.57 Aligned_cols=37 Identities=8% Similarity=-0.067 Sum_probs=26.1
Q ss_pred CHHHHHHhhhhcCCcchhhHHHHhhccCceecCCCcE
Q 047158 158 DKDYVLKILQGCGFSSEIVFFVLTQRCLIVIDEDNRL 194 (212)
Q Consensus 158 ~~~~l~~~~~~~~~~~~~~l~~L~~~sll~~~~~~~~ 194 (212)
+...+...+..........++.|.+.+++.....+.+
T Consensus 22 s~~~la~~~~vs~~tv~~~l~~L~~~g~i~~~~~~g~ 58 (60)
T smart00345 22 SERELAAQLGVSRTTVREALSRLEAEGLVQRRPGSGT 58 (60)
T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEecCCee
Confidence 5666666665555555668999999999987654444
No 187
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=32.15 E-value=1.3e+02 Score=23.73 Aligned_cols=52 Identities=10% Similarity=0.022 Sum_probs=29.4
Q ss_pred HHHHHhccCeEEEEecCCCCh---hhHhhhhcccCCCCCCcEEEEEcCChhHHhh
Q 047158 13 MMSSRLLHRRVFVVLDNLDHI---DQLKPLAGENKWFGSGSRIIITNRNEHLLKV 64 (212)
Q Consensus 13 ~l~~~L~~kr~LlvlDdv~~~---~~~~~l~~~~~~~~~gs~iivTtR~~~~~~~ 64 (212)
.+...|..+.=+++||..-.. ...+.+...+.....+..||++|.+......
T Consensus 166 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~ 220 (260)
T PRK10744 166 CIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQAAR 220 (260)
T ss_pred HHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHH
Confidence 455666667788999998632 2222222222211124568888887776544
No 188
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=31.97 E-value=1.2e+02 Score=23.69 Aligned_cols=52 Identities=13% Similarity=0.086 Sum_probs=29.2
Q ss_pred HHHHHhccCeEEEEecCCCC---hhhHhhhhcccCCCCCCcEEEEEcCChhHHhh
Q 047158 13 MMSSRLLHRRVFVVLDNLDH---IDQLKPLAGENKWFGSGSRIIITNRNEHLLKV 64 (212)
Q Consensus 13 ~l~~~L~~kr~LlvlDdv~~---~~~~~~l~~~~~~~~~gs~iivTtR~~~~~~~ 64 (212)
.+...+..+.=+++||..-. ......+...+.....+..||++|.+......
T Consensus 158 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~ 212 (252)
T PRK14272 158 CIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMHQAAR 212 (252)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHH
Confidence 34455556677899999853 22222222222211224668888888776554
No 189
>PF12840 HTH_20: Helix-turn-helix domain; PDB: 1ULY_A 2CWE_A 1Y0U_B 2QUF_B 2QLZ_C 2OQG_B 2ZKZ_C 3PQK_A 3PQJ_D 3F6O_B ....
Probab=31.84 E-value=23 Score=21.08 Aligned_cols=51 Identities=10% Similarity=-0.018 Sum_probs=29.7
Q ss_pred chhhhHHhhhhccCCCCCHHHHHHhhhhcCCcchhhHHHHhhccCceecCCC
Q 047158 141 DEEKNVFMDIAHLFVGMDKDYVLKILQGCGFSSEIVFFVLTQRCLIVIDEDN 192 (212)
Q Consensus 141 ~~~~~~~~~la~f~~~~~~~~l~~~~~~~~~~~~~~l~~L~~~sll~~~~~~ 192 (212)
|.....+.++ .-..+.+...+........-.....++.|.+.+||+....|
T Consensus 10 p~R~~Il~~L-~~~~~~t~~ela~~l~~~~~t~s~hL~~L~~aGli~~~~~g 60 (61)
T PF12840_consen 10 PTRLRILRLL-ASNGPMTVSELAEELGISQSTVSYHLKKLEEAGLIEVEREG 60 (61)
T ss_dssp HHHHHHHHHH-HHCSTBEHHHHHHHHTS-HHHHHHHHHHHHHTTSEEEEEET
T ss_pred HHHHHHHHHH-hcCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCeEEeccC
Confidence 3334444444 12234666666665543333344469999999999987655
No 190
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=31.75 E-value=1.1e+02 Score=24.04 Aligned_cols=60 Identities=13% Similarity=0.136 Sum_probs=33.2
Q ss_pred HHHHHhccCeEEEEecCCCC---hhhHhhhhcccCCCCCCcEEEEEcCChhHHhhcCCCceEeC
Q 047158 13 MMSSRLLHRRVFVVLDNLDH---IDQLKPLAGENKWFGSGSRIIITNRNEHLLKVFEVDGVCTV 73 (212)
Q Consensus 13 ~l~~~L~~kr~LlvlDdv~~---~~~~~~l~~~~~~~~~gs~iivTtR~~~~~~~~~~~~~~~l 73 (212)
.+...+-.+.-++++|+-.. ....+.+...+.....++.||++|.+...+..+ +.+++.+
T Consensus 163 ~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiilvsh~~~~~~~~-~d~v~~l 225 (257)
T PRK14246 163 TIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQQVARV-ADYVAFL 225 (257)
T ss_pred HHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCcEEEEEECCHHHHHHh-CCEEEEE
Confidence 45555666777889998753 222222222222112346799999988766543 2344443
No 191
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=31.70 E-value=1.7e+02 Score=22.31 Aligned_cols=60 Identities=7% Similarity=0.138 Sum_probs=33.0
Q ss_pred HHHHHhccCeEEEEecCCCC---hhhHhhhhcccCCCCCCcEEEEEcCChhHHhhcCCCceEeCC
Q 047158 13 MMSSRLLHRRVFVVLDNLDH---IDQLKPLAGENKWFGSGSRIIITNRNEHLLKVFEVDGVCTVP 74 (212)
Q Consensus 13 ~l~~~L~~kr~LlvlDdv~~---~~~~~~l~~~~~~~~~gs~iivTtR~~~~~~~~~~~~~~~l~ 74 (212)
.+...+..+.=+++||.-.. ....+.+...+.....+..||++|.+...... +.+++.+.
T Consensus 160 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~--~d~i~~l~ 222 (226)
T cd03248 160 AIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLSTVER--ADQILVLD 222 (226)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHh--CCEEEEec
Confidence 45556666778899998863 22222222222211123568888888776643 45555543
No 192
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=31.63 E-value=78 Score=24.38 Aligned_cols=53 Identities=13% Similarity=0.133 Sum_probs=30.9
Q ss_pred HHHHHHhccCeEEEEecCCCC---hhhHhhhhcccCCC--CCCcEEEEEcCChhHHhh
Q 047158 12 NMMSSRLLHRRVFVVLDNLDH---IDQLKPLAGENKWF--GSGSRIIITNRNEHLLKV 64 (212)
Q Consensus 12 ~~l~~~L~~kr~LlvlDdv~~---~~~~~~l~~~~~~~--~~gs~iivTtR~~~~~~~ 64 (212)
-.+...+..+.=+++||.... ....+.+...+... ..|..||++|.+......
T Consensus 139 l~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~ 196 (232)
T cd03300 139 VAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALT 196 (232)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence 345566667778899999863 22222332222211 126678888888776544
No 193
>PRK04966 hypothetical protein; Provisional
Probab=31.20 E-value=95 Score=19.56 Aligned_cols=29 Identities=14% Similarity=0.253 Sum_probs=24.1
Q ss_pred cchHHHHHHHHHHhccCeEEEEecCCCCh
Q 047158 5 ESIDRGLNMMSSRLLHRRVFVVLDNLDHI 33 (212)
Q Consensus 5 ~~~~~~~~~l~~~L~~kr~LlvlDdv~~~ 33 (212)
.+.++.++.++..|+....+|++|...+.
T Consensus 33 ~sl~~kv~qv~~qL~~G~~viv~se~~ES 61 (72)
T PRK04966 33 RSLEQKVADVKRQLQSGEAVLVWSELHET 61 (72)
T ss_pred ccHHHHHHHHHHHHHcCCEEEEECCCCCe
Confidence 45778888999999999999999987654
No 194
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=31.02 E-value=1.2e+02 Score=23.67 Aligned_cols=49 Identities=16% Similarity=0.131 Sum_probs=28.7
Q ss_pred HHHHHhccCeEEEEecCCCCh---h---hHhhhhcccCCCCCCcEEEEEcCChhHHhh
Q 047158 13 MMSSRLLHRRVFVVLDNLDHI---D---QLKPLAGENKWFGSGSRIIITNRNEHLLKV 64 (212)
Q Consensus 13 ~l~~~L~~kr~LlvlDdv~~~---~---~~~~l~~~~~~~~~gs~iivTtR~~~~~~~ 64 (212)
.+...+..+.-+++||+.... . .+..+...+. .+..||++|.+...+..
T Consensus 156 ~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~---~~~tili~sH~~~~~~~ 210 (250)
T PRK14262 156 CIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELS---ENYTIVIVTHNIGQAIR 210 (250)
T ss_pred HHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHh---cCcEEEEEeCCHHHHHH
Confidence 445555567778999998532 2 2222222222 24568888888775444
No 195
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=30.86 E-value=2.1e+02 Score=25.50 Aligned_cols=70 Identities=20% Similarity=0.158 Sum_probs=42.1
Q ss_pred cCeEEEEecCCCChh---------h-----HhhhhcccCC--CCCCcEEEEEcCChhHHhhc-----CCCceEeCCCCCh
Q 047158 20 HRRVFVVLDNLDHID---------Q-----LKPLAGENKW--FGSGSRIIITNRNEHLLKVF-----EVDGVCTVPRLCL 78 (212)
Q Consensus 20 ~kr~LlvlDdv~~~~---------~-----~~~l~~~~~~--~~~gs~iivTtR~~~~~~~~-----~~~~~~~l~~l~~ 78 (212)
+++++|++|+++... + +..++..+.. ...+..||.||......... -....+.++..+.
T Consensus 288 g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~ 367 (512)
T TIGR03689 288 GRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDA 367 (512)
T ss_pred CCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCH
Confidence 468999999997431 1 1233332221 11344566666544432211 1244689999999
Q ss_pred HHHHHHHHHhh
Q 047158 79 GKSFQLFSWHA 89 (212)
Q Consensus 79 ~~a~~Ll~~~~ 89 (212)
++..++|..+.
T Consensus 368 e~r~~Il~~~l 378 (512)
T TIGR03689 368 EAAADIFSKYL 378 (512)
T ss_pred HHHHHHHHHHh
Confidence 99999998876
No 196
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=30.77 E-value=1.2e+02 Score=23.63 Aligned_cols=50 Identities=16% Similarity=0.142 Sum_probs=29.3
Q ss_pred HHHHHhccCeEEEEecCCCCh---h---hHhhhhcccCCCCCCcEEEEEcCChhHHhhc
Q 047158 13 MMSSRLLHRRVFVVLDNLDHI---D---QLKPLAGENKWFGSGSRIIITNRNEHLLKVF 65 (212)
Q Consensus 13 ~l~~~L~~kr~LlvlDdv~~~---~---~~~~l~~~~~~~~~gs~iivTtR~~~~~~~~ 65 (212)
.+...|..+.-+++||..-.. . .+..++..+. .+..||++|.+...+..+
T Consensus 160 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~---~~~tvii~sH~~~~~~~~ 215 (254)
T PRK14273 160 CIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLK---ESYTIIIVTHNMQQAGRI 215 (254)
T ss_pred HHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHh---cCCEEEEEeCCHHHHHHh
Confidence 444555556779999988532 2 2222232332 245688888888766554
No 197
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=30.45 E-value=2.5e+02 Score=26.14 Aligned_cols=30 Identities=13% Similarity=0.233 Sum_probs=18.2
Q ss_pred HHHHhccC-eEEEEecCCCC--hhhHhhhhccc
Q 047158 14 MSSRLLHR-RVFVVLDNLDH--IDQLKPLAGEN 43 (212)
Q Consensus 14 l~~~L~~k-r~LlvlDdv~~--~~~~~~l~~~~ 43 (212)
+.+.++.+ .-+++||+++. .+.++.|...+
T Consensus 545 l~~~~~~~p~~VvllDEieka~~~~~~~Ll~~l 577 (731)
T TIGR02639 545 LTEAVRKHPHCVLLLDEIEKAHPDIYNILLQVM 577 (731)
T ss_pred HHHHHHhCCCeEEEEechhhcCHHHHHHHHHhh
Confidence 44555444 45999999984 44455555443
No 198
>smart00550 Zalpha Z-DNA-binding domain in adenosine deaminases. Helix-turn-helix-containing domain. Also known as Zab.
Probab=30.03 E-value=1.3e+02 Score=18.28 Aligned_cols=55 Identities=11% Similarity=-0.039 Sum_probs=36.4
Q ss_pred hhhhHHhhhhccCC-CCCHHHHHHhhhhcCCcchhhHHHHhhccCceecC-C-CcEEe
Q 047158 142 EEKNVFMDIAHLFV-GMDKDYVLKILQGCGFSSEIVFFVLTQRCLIVIDE-D-NRLKM 196 (212)
Q Consensus 142 ~~~~~~~~la~f~~-~~~~~~l~~~~~~~~~~~~~~l~~L~~~sll~~~~-~-~~~~m 196 (212)
....++.++.--+. +++...+.....-..-.....+..|.+.++|.... . +.|++
T Consensus 7 ~~~~IL~~L~~~g~~~~ta~eLa~~lgl~~~~v~r~L~~L~~~G~V~~~~~~~~~W~i 64 (68)
T smart00550 7 LEEKILEFLENSGDETSTALQLAKNLGLPKKEVNRVLYSLEKKGKVCKQGGTPPLWKL 64 (68)
T ss_pred HHHHHHHHHHHCCCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecCCCCCceEe
Confidence 34455555555544 47777777766655555666799999999998764 2 44443
No 199
>PRK11014 transcriptional repressor NsrR; Provisional
Probab=29.57 E-value=84 Score=22.28 Aligned_cols=46 Identities=11% Similarity=0.028 Sum_probs=27.4
Q ss_pred hHHhhhhccCCC--CCHHHHHHhhhhcCCcchhhHHHHhhccCceecC
Q 047158 145 NVFMDIAHLFVG--MDKDYVLKILQGCGFSSEIVFFVLTQRCLIVIDE 190 (212)
Q Consensus 145 ~~~~~la~f~~~--~~~~~l~~~~~~~~~~~~~~l~~L~~~sll~~~~ 190 (212)
++..+++.++.| ++...+...+.-..-.....+..|...|+|....
T Consensus 12 ~~~i~la~~~~g~~~s~~~ia~~~~is~~~vrk~l~~L~~~Glv~s~~ 59 (141)
T PRK11014 12 RALIYMASLPEGRMTSISEVTEVYGVSRNHMVKIINQLSRAGYVTAVR 59 (141)
T ss_pred HHHHHHhcCCCCCccCHHHHHHHHCcCHHHHHHHHHHHHhCCEEEEec
Confidence 344555666554 4555665555444444455677888888887654
No 200
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=29.37 E-value=1.3e+02 Score=23.77 Aligned_cols=53 Identities=6% Similarity=-0.014 Sum_probs=29.6
Q ss_pred HHHHHhccCeEEEEecCCCCh---hhHhhhhcccCCCCCCcEEEEEcCChhHHhhc
Q 047158 13 MMSSRLLHRRVFVVLDNLDHI---DQLKPLAGENKWFGSGSRIIITNRNEHLLKVF 65 (212)
Q Consensus 13 ~l~~~L~~kr~LlvlDdv~~~---~~~~~l~~~~~~~~~gs~iivTtR~~~~~~~~ 65 (212)
.+...|..+.-+++||..-.. .....+...+.....+..||++|.+.......
T Consensus 173 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~~~tiiivtH~~~~~~~~ 228 (267)
T PRK14235 173 CIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQQAARV 228 (267)
T ss_pred HHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEEEEcCHHHHHhh
Confidence 455556667789999998532 22222222221111245688888887766543
No 201
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=29.29 E-value=1.4e+02 Score=21.57 Aligned_cols=52 Identities=12% Similarity=0.141 Sum_probs=29.8
Q ss_pred HHHHHhccCeEEEEecCCCC---hhhHhhhhcccCCC-CCCcEEEEEcCChhHHhh
Q 047158 13 MMSSRLLHRRVFVVLDNLDH---IDQLKPLAGENKWF-GSGSRIIITNRNEHLLKV 64 (212)
Q Consensus 13 ~l~~~L~~kr~LlvlDdv~~---~~~~~~l~~~~~~~-~~gs~iivTtR~~~~~~~ 64 (212)
.+...+..+.-++++|+... ....+.+...+... ..|..||++|.+......
T Consensus 92 ~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~ 147 (163)
T cd03216 92 EIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFE 147 (163)
T ss_pred HHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 45556666778888999853 22222222222211 236678999988765444
No 202
>PRK08181 transposase; Validated
Probab=29.24 E-value=30 Score=27.83 Aligned_cols=38 Identities=18% Similarity=0.104 Sum_probs=18.9
Q ss_pred eEEEEecCCCCh----hhHhhhhcccCCCCCCcEEEEEcCCh
Q 047158 22 RVFVVLDNLDHI----DQLKPLAGENKWFGSGSRIIITNRNE 59 (212)
Q Consensus 22 r~LlvlDdv~~~----~~~~~l~~~~~~~~~gs~iivTtR~~ 59 (212)
-=|||+||+... .....+...+...-.+..+|+||...
T Consensus 168 ~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~ 209 (269)
T PRK08181 168 FDLLILDDLAYVTKDQAETSVLFELISARYERRSILITANQP 209 (269)
T ss_pred CCEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCC
Confidence 349999999532 11122322222111123588888644
No 203
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=29.03 E-value=1.2e+02 Score=23.98 Aligned_cols=49 Identities=18% Similarity=0.177 Sum_probs=29.0
Q ss_pred HHHHHhccCeEEEEecCCCC---hh---hHhhhhcccCCCCCCcEEEEEcCChhHHhh
Q 047158 13 MMSSRLLHRRVFVVLDNLDH---ID---QLKPLAGENKWFGSGSRIIITNRNEHLLKV 64 (212)
Q Consensus 13 ~l~~~L~~kr~LlvlDdv~~---~~---~~~~l~~~~~~~~~gs~iivTtR~~~~~~~ 64 (212)
.+...+..+.-+++||.... .. .+..++..+. .+..||++|.+......
T Consensus 178 ~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~---~~~tiiivtH~~~~~~~ 232 (272)
T PRK14236 178 VIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELK---SKYTIVIVTHNMQQAAR 232 (272)
T ss_pred HHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHH---hCCeEEEEeCCHHHHHh
Confidence 45555666778899998853 22 2222222222 24568888888766544
No 204
>PF09681 Phage_rep_org_N: N-terminal phage replisome organiser (Phage_rep_org_N); InterPro: IPR010056 This entry is represented by the N-terminal domain of Bacteriophage A500, Gp45. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The proteins in this entry contains a region of low-complexity sequence that reflects DNA direct repeats able to function as an origin of phage replication. The low-complexity region is adjacent to this N-terminal domain.
Probab=28.97 E-value=82 Score=21.99 Aligned_cols=42 Identities=17% Similarity=0.166 Sum_probs=32.5
Q ss_pred CCHHHHHHhhhhcCCcchhhHHHHhhccCceecCCCcEEecH
Q 047158 157 MDKDYVLKILQGCGFSSEIVFFVLTQRCLIVIDEDNRLKMHD 198 (212)
Q Consensus 157 ~~~~~l~~~~~~~~~~~~~~l~~L~~~sll~~~~~~~~~mH~ 198 (212)
.+.+.++..........+.++..|.+.+||+..++|.|.|-.
T Consensus 54 y~~e~LA~~~~~~~~~V~~AL~~f~k~glIe~~ed~~i~i~~ 95 (121)
T PF09681_consen 54 YTAEMLALEFDRPVDTVRLALAVFQKLGLIEIDEDGVIYIPN 95 (121)
T ss_pred CcHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEecCCeEEeec
Confidence 566666666655555567789999999999999888887765
No 205
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=28.86 E-value=1.1e+02 Score=23.30 Aligned_cols=53 Identities=15% Similarity=0.192 Sum_probs=30.7
Q ss_pred HHHHHhccCeEEEEecCCCCh---hhHhhhhcccCCC-CCCcEEEEEcCChhHHhhc
Q 047158 13 MMSSRLLHRRVFVVLDNLDHI---DQLKPLAGENKWF-GSGSRIIITNRNEHLLKVF 65 (212)
Q Consensus 13 ~l~~~L~~kr~LlvlDdv~~~---~~~~~l~~~~~~~-~~gs~iivTtR~~~~~~~~ 65 (212)
.+...+....-++++|..... ...+.+...+... ..|..||++|.+.......
T Consensus 134 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~ 190 (223)
T TIGR03740 134 GIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQL 190 (223)
T ss_pred HHHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHh
Confidence 455566667788999998532 2222222222111 2356799999988776543
No 206
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=28.72 E-value=1.8e+02 Score=22.85 Aligned_cols=59 Identities=7% Similarity=0.054 Sum_probs=33.1
Q ss_pred HHHHHhccCeEEEEecCCCC---hhhHhhhhcccCCCCCCcEEEEEcCChhHHhhcCCCceEeC
Q 047158 13 MMSSRLLHRRVFVVLDNLDH---IDQLKPLAGENKWFGSGSRIIITNRNEHLLKVFEVDGVCTV 73 (212)
Q Consensus 13 ~l~~~L~~kr~LlvlDdv~~---~~~~~~l~~~~~~~~~gs~iivTtR~~~~~~~~~~~~~~~l 73 (212)
.+...+..+.=+++||+.-. ...-+.+...+.....+..||++|.+...... +.+++.+
T Consensus 166 ~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~--~dri~~l 227 (257)
T cd03288 166 CLARAFVRKSSILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVSTILD--ADLVLVL 227 (257)
T ss_pred HHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhcCCCEEEEEecChHHHHh--CCEEEEE
Confidence 45556666777899998753 22222222222212235678888888777654 4444444
No 207
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=28.65 E-value=1.3e+02 Score=23.49 Aligned_cols=61 Identities=25% Similarity=0.239 Sum_probs=33.5
Q ss_pred HHHHHhccCeEEEEecCCCCh---hhHhhhhcccCCC-CCCcEEEEEcCChhHHhhcCCCceEeC
Q 047158 13 MMSSRLLHRRVFVVLDNLDHI---DQLKPLAGENKWF-GSGSRIIITNRNEHLLKVFEVDGVCTV 73 (212)
Q Consensus 13 ~l~~~L~~kr~LlvlDdv~~~---~~~~~l~~~~~~~-~~gs~iivTtR~~~~~~~~~~~~~~~l 73 (212)
.+...+..+.-++++|..-.. ...+.+...+... ..|..||++|.+........+..++.+
T Consensus 161 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~~~~~~~d~i~~l 225 (252)
T CHL00131 161 EILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHVM 225 (252)
T ss_pred HHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhhCCEEEEE
Confidence 455666667888999998532 2222222222111 235678999988776554322334333
No 208
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=28.60 E-value=1.1e+02 Score=23.40 Aligned_cols=60 Identities=10% Similarity=0.143 Sum_probs=33.2
Q ss_pred HHHHHhccCeEEEEecCCCC---hhhHhhhhcccCCC--CCCcEEEEEcCChhHHhhcCCCceEeC
Q 047158 13 MMSSRLLHRRVFVVLDNLDH---IDQLKPLAGENKWF--GSGSRIIITNRNEHLLKVFEVDGVCTV 73 (212)
Q Consensus 13 ~l~~~L~~kr~LlvlDdv~~---~~~~~~l~~~~~~~--~~gs~iivTtR~~~~~~~~~~~~~~~l 73 (212)
.+...|..+.=+++||.... ....+.+...+... ..|..||++|.+....... +.+++.+
T Consensus 155 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~-~d~i~~l 219 (228)
T cd03257 155 AIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKI-ADRVAVM 219 (228)
T ss_pred HHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHh-cCeEEEE
Confidence 44555556777899999863 22222222222211 1256799999888766543 2444444
No 209
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=28.56 E-value=1.1e+02 Score=22.46 Aligned_cols=52 Identities=13% Similarity=0.209 Sum_probs=30.3
Q ss_pred HHHHHhccCeEEEEecCCCC---hhhHhhhhcccCCC-CC-CcEEEEEcCChhHHhh
Q 047158 13 MMSSRLLHRRVFVVLDNLDH---IDQLKPLAGENKWF-GS-GSRIIITNRNEHLLKV 64 (212)
Q Consensus 13 ~l~~~L~~kr~LlvlDdv~~---~~~~~~l~~~~~~~-~~-gs~iivTtR~~~~~~~ 64 (212)
.+...+....-++++|..-. ....+.+...+... .. |..||++|.+......
T Consensus 107 ~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~ 163 (180)
T cd03214 107 LLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAAR 163 (180)
T ss_pred HHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 45566667788899999853 22222222222211 12 5678999988776544
No 210
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=28.48 E-value=1.5e+02 Score=23.63 Aligned_cols=61 Identities=8% Similarity=-0.004 Sum_probs=34.8
Q ss_pred HHHHHhccCeEEEEecCCCC---hhhHhhhhcccCCCCCCcEEEEEcCChhHHhhcCCCceEeCC
Q 047158 13 MMSSRLLHRRVFVVLDNLDH---IDQLKPLAGENKWFGSGSRIIITNRNEHLLKVFEVDGVCTVP 74 (212)
Q Consensus 13 ~l~~~L~~kr~LlvlDdv~~---~~~~~~l~~~~~~~~~gs~iivTtR~~~~~~~~~~~~~~~l~ 74 (212)
.+...|..+.=+++||..-. ....+.+...+.....+..||++|.+......+ +.+++.+.
T Consensus 171 ~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~-~d~i~~l~ 234 (274)
T PRK14265 171 CIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNMQQASRV-ADWTAFFN 234 (274)
T ss_pred HHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh-CCEEEEEe
Confidence 45555566777899998853 222222222222112246799999988776654 34555553
No 211
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=28.42 E-value=1.5e+02 Score=23.28 Aligned_cols=50 Identities=14% Similarity=0.129 Sum_probs=28.6
Q ss_pred HHHHHhccCeEEEEecCCCCh---h---hHhhhhcccCCCCCCcEEEEEcCChhHHhhc
Q 047158 13 MMSSRLLHRRVFVVLDNLDHI---D---QLKPLAGENKWFGSGSRIIITNRNEHLLKVF 65 (212)
Q Consensus 13 ~l~~~L~~kr~LlvlDdv~~~---~---~~~~l~~~~~~~~~gs~iivTtR~~~~~~~~ 65 (212)
.+...+..+.-+++||..-.. . .+..++..+. .+..||++|.+......+
T Consensus 165 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~---~~~tiiivtH~~~~~~~~ 220 (259)
T PRK14274 165 CIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLK---EKYTIVIVTHNMQQAARV 220 (259)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHh---cCCEEEEEEcCHHHHHHh
Confidence 455556667779999998532 2 2222222232 245678888777655443
No 212
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=27.82 E-value=1.3e+02 Score=23.42 Aligned_cols=49 Identities=14% Similarity=0.146 Sum_probs=28.8
Q ss_pred HHHHHhccCeEEEEecCCCC---hh---hHhhhhcccCCCCCCcEEEEEcCChhHHhh
Q 047158 13 MMSSRLLHRRVFVVLDNLDH---ID---QLKPLAGENKWFGSGSRIIITNRNEHLLKV 64 (212)
Q Consensus 13 ~l~~~L~~kr~LlvlDdv~~---~~---~~~~l~~~~~~~~~gs~iivTtR~~~~~~~ 64 (212)
.+...+..+.-+++||..-. .. .+..++..+. .|..||++|.+......
T Consensus 159 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~---~~~tiiiisH~~~~~~~ 213 (251)
T PRK14244 159 CIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELK---KNFTIIVVTHSMKQAKK 213 (251)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh---cCCeEEEEeCCHHHHHh
Confidence 44555556677899998853 22 2222332222 35678888888776554
No 213
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=27.74 E-value=83 Score=23.88 Aligned_cols=58 Identities=16% Similarity=0.205 Sum_probs=33.6
Q ss_pred HHHHhccCeEEEEecCCCC---hhhHh-hhhcccCCCC-C-CcEEEEEcCChhHHhhcCCCceEeC
Q 047158 14 MSSRLLHRRVFVVLDNLDH---IDQLK-PLAGENKWFG-S-GSRIIITNRNEHLLKVFEVDGVCTV 73 (212)
Q Consensus 14 l~~~L~~kr~LlvlDdv~~---~~~~~-~l~~~~~~~~-~-gs~iivTtR~~~~~~~~~~~~~~~l 73 (212)
+...+..+.-++++|.... ....+ .+...+.... . |..||++|.+...... ...++.+
T Consensus 132 la~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~~--~d~i~~l 195 (204)
T cd03240 132 LAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVDA--ADHIYRV 195 (204)
T ss_pred HHHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHHhh--CCEEEEE
Confidence 4456667888999999863 22223 3333332222 2 5568889988776543 3455544
No 214
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=27.66 E-value=1.4e+02 Score=23.28 Aligned_cols=52 Identities=12% Similarity=0.035 Sum_probs=28.7
Q ss_pred HHHHHhccCeEEEEecCCCC---hhhHhhhhcccCCCCCCcEEEEEcCChhHHhh
Q 047158 13 MMSSRLLHRRVFVVLDNLDH---IDQLKPLAGENKWFGSGSRIIITNRNEHLLKV 64 (212)
Q Consensus 13 ~l~~~L~~kr~LlvlDdv~~---~~~~~~l~~~~~~~~~gs~iivTtR~~~~~~~ 64 (212)
.+...|..+.-+++||..-. ......+...+.....|..||++|.+......
T Consensus 159 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~~~~ 213 (253)
T PRK14242 159 CIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHNMQQAAR 213 (253)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEecHHHHHH
Confidence 45555666777999999853 22222222222211224568888887766544
No 215
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=27.64 E-value=1.4e+02 Score=23.33 Aligned_cols=52 Identities=6% Similarity=-0.003 Sum_probs=28.6
Q ss_pred HHHHHhccCeEEEEecCCCC---hhhHhhhhcccCCCCCCcEEEEEcCChhHHhh
Q 047158 13 MMSSRLLHRRVFVVLDNLDH---IDQLKPLAGENKWFGSGSRIIITNRNEHLLKV 64 (212)
Q Consensus 13 ~l~~~L~~kr~LlvlDdv~~---~~~~~~l~~~~~~~~~gs~iivTtR~~~~~~~ 64 (212)
.+...+..+.-++++|..-. ......+...+.....+..||++|.+......
T Consensus 159 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~ 213 (253)
T PRK14267 159 VIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAAR 213 (253)
T ss_pred HHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHh
Confidence 34455556777899998853 22222222222111124568899988776544
No 216
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=27.52 E-value=1.7e+02 Score=23.62 Aligned_cols=50 Identities=12% Similarity=0.228 Sum_probs=31.0
Q ss_pred HHHHHhccCeEEEEecCCCCh---h---hHhhhhcccCCCCCCcEEEEEcCChhHHhhc
Q 047158 13 MMSSRLLHRRVFVVLDNLDHI---D---QLKPLAGENKWFGSGSRIIITNRNEHLLKVF 65 (212)
Q Consensus 13 ~l~~~L~~kr~LlvlDdv~~~---~---~~~~l~~~~~~~~~gs~iivTtR~~~~~~~~ 65 (212)
.+...|..+.=+++||..... . .+..+...+. .+..||+||.+...+..+
T Consensus 143 ~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~---~~~tiii~sH~l~~~~~~ 198 (301)
T TIGR03522 143 GLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIG---KDKTIILSTHIMQEVEAI 198 (301)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhc---CCCEEEEEcCCHHHHHHh
Confidence 455666677889999998632 2 2222222332 246799999988765543
No 217
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=27.50 E-value=1.3e+02 Score=23.56 Aligned_cols=53 Identities=9% Similarity=0.051 Sum_probs=29.5
Q ss_pred HHHHHhccCeEEEEecCCCC---hhhHhhhhcccCCCCCCcEEEEEcCChhHHhhc
Q 047158 13 MMSSRLLHRRVFVVLDNLDH---IDQLKPLAGENKWFGSGSRIIITNRNEHLLKVF 65 (212)
Q Consensus 13 ~l~~~L~~kr~LlvlDdv~~---~~~~~~l~~~~~~~~~gs~iivTtR~~~~~~~~ 65 (212)
.+...|..+.-+++||..-. ......+...+.....|..||++|.+......+
T Consensus 164 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~tiiivsH~~~~~~~~ 219 (258)
T PRK14268 164 CIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARI 219 (258)
T ss_pred HHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHHh
Confidence 44555556677899998853 222222222221111256788888887766543
No 218
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=27.38 E-value=1.3e+02 Score=23.38 Aligned_cols=45 Identities=16% Similarity=0.107 Sum_probs=28.2
Q ss_pred cCeEEEEecCCCC----hh--h-HhhhhcccCCCCCCcEEEEEcCChhHHhhc
Q 047158 20 HRRVFVVLDNLDH----ID--Q-LKPLAGENKWFGSGSRIIITNRNEHLLKVF 65 (212)
Q Consensus 20 ~kr~LlvlDdv~~----~~--~-~~~l~~~~~~~~~gs~iivTtR~~~~~~~~ 65 (212)
+++.|+++|..-. .+ . ...+...+... .++.+|++|.+..+....
T Consensus 109 ~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~~-~~~~~i~~TH~~~l~~~~ 160 (222)
T cd03287 109 TSRSLVILDELGRGTSTHDGIAIAYATLHYLLEE-KKCLVLFVTHYPSLGEIL 160 (222)
T ss_pred CCCeEEEEccCCCCCChhhHHHHHHHHHHHHHhc-cCCeEEEEcccHHHHHHH
Confidence 4689999999731 11 1 12233333322 478899999998876554
No 219
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=27.36 E-value=1.4e+02 Score=23.67 Aligned_cols=49 Identities=18% Similarity=0.133 Sum_probs=28.2
Q ss_pred HHHHHhccCeEEEEecCCCCh---h---hHhhhhcccCCCCCCcEEEEEcCChhHHhh
Q 047158 13 MMSSRLLHRRVFVVLDNLDHI---D---QLKPLAGENKWFGSGSRIIITNRNEHLLKV 64 (212)
Q Consensus 13 ~l~~~L~~kr~LlvlDdv~~~---~---~~~~l~~~~~~~~~gs~iivTtR~~~~~~~ 64 (212)
.+...+..+.=+++||..-.. . .+..+...+. ++..||++|.+......
T Consensus 173 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~---~~~tiii~tH~~~~~~~ 227 (267)
T PRK14237 173 CIARAIAVKPDILLMDEPASALDPISTMQLEETMFELK---KNYTIIIVTHNMQQAAR 227 (267)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh---cCCEEEEEecCHHHHHH
Confidence 445555566678899998532 2 2222232222 24568888887766544
No 220
>COG1959 Predicted transcriptional regulator [Transcription]
Probab=27.32 E-value=81 Score=22.83 Aligned_cols=49 Identities=12% Similarity=-0.033 Sum_probs=30.0
Q ss_pred hhhhHHhhhhccCCC--CCHHHHHHhhhhcCCcchhhHHHHhhccCceecC
Q 047158 142 EEKNVFMDIAHLFVG--MDKDYVLKILQGCGFSSEIVFFVLTQRCLIVIDE 190 (212)
Q Consensus 142 ~~~~~~~~la~f~~~--~~~~~l~~~~~~~~~~~~~~l~~L~~~sll~~~~ 190 (212)
..-+++.++|..+.+ ++.+.+...-.-....-+..+..|.+.+||+...
T Consensus 9 yal~~L~~LA~~~~~~~~s~~~IA~~~~is~~~L~kil~~L~kaGlV~S~r 59 (150)
T COG1959 9 YALRALLYLALLPGGGPVSSAEIAERQGISPSYLEKILSKLRKAGLVKSVR 59 (150)
T ss_pred HHHHHHHHHHhCCCCCcccHHHHHHHhCcCHHHHHHHHHHHHHcCCEEeec
Confidence 344567788887763 5556555544333323344588888889988553
No 221
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=27.25 E-value=1.6e+02 Score=22.13 Aligned_cols=60 Identities=13% Similarity=0.190 Sum_probs=32.4
Q ss_pred HHHHHhccCeEEEEecCCCC---hhhHhhhhcccCCC-CCCcEEEEEcCChhHHhhcCCCceEeC
Q 047158 13 MMSSRLLHRRVFVVLDNLDH---IDQLKPLAGENKWF-GSGSRIIITNRNEHLLKVFEVDGVCTV 73 (212)
Q Consensus 13 ~l~~~L~~kr~LlvlDdv~~---~~~~~~l~~~~~~~-~~gs~iivTtR~~~~~~~~~~~~~~~l 73 (212)
.+...|..+.=+++||..-. ......+...+... ..|..||++|.+......+ +.+++.+
T Consensus 142 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~-~d~i~~l 205 (213)
T cd03235 142 LLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEY-FDRVLLL 205 (213)
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh-cCEEEEE
Confidence 34455566777899998853 22222222222211 1466788888887765543 2444444
No 222
>TIGR03338 phnR_burk phosphonate utilization associated transcriptional regulator. This family of proteins are members of the GntR family (pfam00392) containing an N-terminal helix-turn-helix (HTH) motif. This clade is found adjacent to or inside of operons for the degradation of 2-aminoethylphosphonate (AEP) in Polaromonas, Burkholderia, Ralstonia and Verminephrobacter.
Probab=27.24 E-value=1.3e+02 Score=22.61 Aligned_cols=40 Identities=10% Similarity=0.073 Sum_probs=32.4
Q ss_pred CCHHHHHHhhhhcCCcchhhHHHHhhccCceecCCCcEEe
Q 047158 157 MDKDYVLKILQGCGFSSEIVFFVLTQRCLIVIDEDNRLKM 196 (212)
Q Consensus 157 ~~~~~l~~~~~~~~~~~~~~l~~L~~~sll~~~~~~~~~m 196 (212)
++...|...+..+.-....++..|...|+|+..++..+.+
T Consensus 35 L~e~~La~~lgVSRtpVReAL~~L~~eGlv~~~~~~G~~V 74 (212)
T TIGR03338 35 LNESDIAARLGVSRGPVREAFRALEEAGLVRNEKNRGVFV 74 (212)
T ss_pred ecHHHHHHHhCCChHHHHHHHHHHHHCCCEEEecCCCeEE
Confidence 7888888888877777888999999999999876544444
No 223
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=27.24 E-value=1.6e+02 Score=22.84 Aligned_cols=50 Identities=16% Similarity=0.175 Sum_probs=29.1
Q ss_pred HHHHHhccCeEEEEecCCCCh---h---hHhhhhcccCCCCCCcEEEEEcCChhHHhhc
Q 047158 13 MMSSRLLHRRVFVVLDNLDHI---D---QLKPLAGENKWFGSGSRIIITNRNEHLLKVF 65 (212)
Q Consensus 13 ~l~~~L~~kr~LlvlDdv~~~---~---~~~~l~~~~~~~~~gs~iivTtR~~~~~~~~ 65 (212)
.+...+..+.=+++||..... . .+..++..+. .+..||++|.+......+
T Consensus 156 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~---~~~tiii~sH~~~~~~~~ 211 (250)
T PRK14240 156 CIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELK---KDYTIVIVTHNMQQASRI 211 (250)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh---cCCeEEEEEeCHHHHHhh
Confidence 445555566778999998532 2 2222222222 245688899887755543
No 224
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=27.21 E-value=2.2e+02 Score=22.49 Aligned_cols=104 Identities=14% Similarity=0.048 Sum_probs=53.7
Q ss_pred hHHHHHHHHHHhccCeEEEEecCCCCh--hhHhhhhcccCC--------CCC-----------CcEEEEEcCChhHHhhc
Q 047158 7 IDRGLNMMSSRLLHRRVFVVLDNLDHI--DQLKPLAGENKW--------FGS-----------GSRIIITNRNEHLLKVF 65 (212)
Q Consensus 7 ~~~~~~~l~~~L~~kr~LlvlDdv~~~--~~~~~l~~~~~~--------~~~-----------gs~iivTtR~~~~~~~~ 65 (212)
..++...+.+ ++ ++-+|.+|.+... .+-+.|.+...+ .++ -+-|=.|||.-.+...+
T Consensus 89 ~~dl~~il~~-l~-~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligATTr~g~ls~pL 166 (233)
T PF05496_consen 89 AGDLAAILTN-LK-EGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGATTRAGLLSSPL 166 (233)
T ss_dssp CHHHHHHHHT----TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEEESSGCCTSHCC
T ss_pred HHHHHHHHHh-cC-CCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEeeeeccccccchhH
Confidence 3444444433 33 4557777999753 333444432221 111 12444578765554443
Q ss_pred CC--CceEeCCCCChHHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCCC
Q 047158 66 EV--DGVCTVPRLCLGKSFQLFSWHAFRKDKPPQRFMKLSRELLRCAEGLP 114 (212)
Q Consensus 66 ~~--~~~~~l~~l~~~~a~~Ll~~~~~~~~~~~~~~~~~~~~i~~~c~glP 114 (212)
-. .-+.+++.-+.+|-.++..+.+..-.. +-..+.+.+|+++|.|-|
T Consensus 167 rdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i--~i~~~~~~~Ia~rsrGtP 215 (233)
T PF05496_consen 167 RDRFGIVLRLEFYSEEELAKIVKRSARILNI--EIDEDAAEEIARRSRGTP 215 (233)
T ss_dssp CTTSSEEEE----THHHHHHHHHHCCHCTT---EE-HHHHHHHHHCTTTSH
T ss_pred HhhcceecchhcCCHHHHHHHHHHHHHHhCC--CcCHHHHHHHHHhcCCCh
Confidence 32 234579999999999999877633221 233566888999888877
No 225
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=27.13 E-value=1.3e+02 Score=23.31 Aligned_cols=52 Identities=15% Similarity=0.240 Sum_probs=31.0
Q ss_pred HHHHHhccCeEEEEecCCCCh---hh---HhhhhcccCCCCCCcEEEEEcCChhHHhhc
Q 047158 13 MMSSRLLHRRVFVVLDNLDHI---DQ---LKPLAGENKWFGSGSRIIITNRNEHLLKVF 65 (212)
Q Consensus 13 ~l~~~L~~kr~LlvlDdv~~~---~~---~~~l~~~~~~~~~gs~iivTtR~~~~~~~~ 65 (212)
.+...+..+.=+++||..-.. .. +..++..+. ...|..||++|.+......+
T Consensus 163 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~~~tiiivsH~~~~~~~~ 220 (236)
T cd03267 163 EIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYN-RERGTTVLLTSHYMKDIEAL 220 (236)
T ss_pred HHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHH-hcCCCEEEEEecCHHHHHHh
Confidence 455566667779999998632 22 222222222 12256799999988765543
No 226
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=26.91 E-value=1.3e+02 Score=23.41 Aligned_cols=60 Identities=13% Similarity=0.047 Sum_probs=31.9
Q ss_pred HHHHHhccCeEEEEecCCCC---hhhHhhhhcccCCCCCCcEEEEEcCChhHHhhcCCCceEeC
Q 047158 13 MMSSRLLHRRVFVVLDNLDH---IDQLKPLAGENKWFGSGSRIIITNRNEHLLKVFEVDGVCTV 73 (212)
Q Consensus 13 ~l~~~L~~kr~LlvlDdv~~---~~~~~~l~~~~~~~~~gs~iivTtR~~~~~~~~~~~~~~~l 73 (212)
.+...+..+.=+++||.... ....+.+...+.....+..||++|.+......+ ..+++.+
T Consensus 157 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~-~d~i~~l 219 (251)
T PRK14251 157 CIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGRI-SDQTAFL 219 (251)
T ss_pred HHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHHHHhh-cCEEEEE
Confidence 44555556777899998863 222222222222111245688888887765543 2344443
No 227
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=26.90 E-value=1.4e+02 Score=21.88 Aligned_cols=52 Identities=10% Similarity=0.141 Sum_probs=30.0
Q ss_pred HHHHHhccCeEEEEecCCCC---hhhHhhhhcccCCC-CCCcEEEEEcCChhHHhh
Q 047158 13 MMSSRLLHRRVFVVLDNLDH---IDQLKPLAGENKWF-GSGSRIIITNRNEHLLKV 64 (212)
Q Consensus 13 ~l~~~L~~kr~LlvlDdv~~---~~~~~~l~~~~~~~-~~gs~iivTtR~~~~~~~ 64 (212)
.+...+..+.-+++||+.-. ....+.+...+... ..|..||++|.+......
T Consensus 114 ~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~ 169 (182)
T cd03215 114 VLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLG 169 (182)
T ss_pred HHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 45566667778999999853 22222222222111 135679999988765544
No 228
>PF03849 Tfb2: Transcription factor Tfb2; InterPro: IPR004598 Members of this family are part of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. The core-TFIIH basal transcription factor complex has six subunits, this is the p52 subunit.; GO: 0006281 DNA repair, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=26.78 E-value=1.5e+02 Score=25.06 Aligned_cols=70 Identities=13% Similarity=0.084 Sum_probs=51.0
Q ss_pred hcCCCCchhhhHHhhhhccCCCCCHHHHHHhhhhcCCc--chhhHHHHhhccCceecC-CC---cEEecHHHHHHHHH
Q 047158 135 FDVLNDDEEKNVFMDIAHLFVGMDKDYVLKILQGCGFS--SEIVFFVLTQRCLIVIDE-DN---RLKMHDLIRDMKEK 206 (212)
Q Consensus 135 ~~~L~~~~~~~~~~~la~f~~~~~~~~l~~~~~~~~~~--~~~~l~~L~~~sll~~~~-~~---~~~mH~lv~~~a~~ 206 (212)
|+.| |+-.|++.+.+...+.+++... ...|...+.. .+.+++.|.+..+++... +| .|.+++-.+.=.+.
T Consensus 25 fR~L-P~LAK~~VmrLL~~~~pv~~~~-l~~Wv~~~~~~~~~~al~~L~~L~Ii~~~~~~~~~~~~~Ln~~F~~~Lr~ 100 (366)
T PF03849_consen 25 FRSL-PPLAKQYVMRLLFVEQPVPQAD-LESWVKPESKKEHDEALKRLRSLHIIQESESPGGKQQYQLNPIFRKNLRN 100 (366)
T ss_pred HHhc-cHHHHHHHHHHHhcCCCcCHHH-HHHHhCccchHHHHHHHHHHhhCeeEeeccCCCCceeEEeCHHHHHHHHH
Confidence 5578 9999999988888887888765 4567664432 255799999999998654 22 39999887765443
No 229
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=26.67 E-value=1.7e+02 Score=22.02 Aligned_cols=50 Identities=10% Similarity=0.176 Sum_probs=30.3
Q ss_pred HHHHHhccCeEEEEecCCCC---hh---hHhhhhcccCCCCCCcEEEEEcCChhHHhhc
Q 047158 13 MMSSRLLHRRVFVVLDNLDH---ID---QLKPLAGENKWFGSGSRIIITNRNEHLLKVF 65 (212)
Q Consensus 13 ~l~~~L~~kr~LlvlDdv~~---~~---~~~~l~~~~~~~~~gs~iivTtR~~~~~~~~ 65 (212)
.+...+..+.=++++|.--. .. .+..++..+. .+..||++|.+......+
T Consensus 140 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~---~~~tii~vsH~~~~~~~~ 195 (211)
T cd03264 140 GIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELG---EDRIVILSTHIVEDVESL 195 (211)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHh---CCCEEEEEcCCHHHHHHh
Confidence 45566667788899998753 22 2223333332 235688999887766543
No 230
>PRK05629 hypothetical protein; Validated
Probab=26.60 E-value=3.3e+02 Score=22.19 Aligned_cols=94 Identities=14% Similarity=0.080 Sum_probs=44.2
Q ss_pred CeEEEEecCCCCh--hhHhhhhcccCCCCCCcEEEEEc----CChhHHhhcC-CCceEeCCCCChHHHHHHHHHhhcCCC
Q 047158 21 RRVFVVLDNLDHI--DQLKPLAGENKWFGSGSRIIITN----RNEHLLKVFE-VDGVCTVPRLCLGKSFQLFSWHAFRKD 93 (212)
Q Consensus 21 kr~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~iivTt----R~~~~~~~~~-~~~~~~l~~l~~~~a~~Ll~~~~~~~~ 93 (212)
.+-+|+++|.... ...+.+...+....+.+.+|+++ +.+.+.+.+. ....++..++...+-.......+-...
T Consensus 64 ~~rlV~v~~~~~~~~~~~~~l~~~l~~~~~~~~Lil~~~~~~~~kk~~K~l~k~~~~ve~~~~~~~~l~~wi~~~~~~~g 143 (318)
T PRK05629 64 EDRVIVLTNMEQAGKEPTDLALSAAVDPSPGIYLIIMHSGGGRTKSMVPKLEKIAVVHEAAKLKPRERPGWVTQEFKNHG 143 (318)
T ss_pred CceEEEEeChHhcChhHHHHHHHHHhCCCCCeEEEEEcCCcchhhHHHHHHHhcceEeeCCCCCHHHHHHHHHHHHHHcC
Confidence 4556777766432 22344444444333444444433 2222222222 244566667777766666665553322
Q ss_pred CCChhHHHHHHHHHHHhCCCCch
Q 047158 94 KPPQRFMKLSRELLRCAEGLPLE 116 (212)
Q Consensus 94 ~~~~~~~~~~~~i~~~c~glPLa 116 (212)
.. -...++..++..+|+-..+
T Consensus 144 ~~--i~~~A~~~L~~~~g~dl~~ 164 (318)
T PRK05629 144 VR--PTPDVVHALLEGVGSDLRE 164 (318)
T ss_pred CC--CCHHHHHHHHHHHCccHHH
Confidence 11 1133455666666665444
No 231
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=26.59 E-value=1.5e+02 Score=22.98 Aligned_cols=49 Identities=10% Similarity=0.080 Sum_probs=27.8
Q ss_pred HHHHHhccCeEEEEecCCCC---hh---hHhhhhcccCCCCCCcEEEEEcCChhHHhh
Q 047158 13 MMSSRLLHRRVFVVLDNLDH---ID---QLKPLAGENKWFGSGSRIIITNRNEHLLKV 64 (212)
Q Consensus 13 ~l~~~L~~kr~LlvlDdv~~---~~---~~~~l~~~~~~~~~gs~iivTtR~~~~~~~ 64 (212)
.+...+..+.-+++||..-. .. .+..++..+. .+..||++|.+......
T Consensus 158 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~---~~~tii~~sH~~~~~~~ 212 (252)
T PRK14239 158 CIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLK---DDYTMLLVTRSMQQASR 212 (252)
T ss_pred HHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHh---hCCeEEEEECCHHHHHH
Confidence 34455556777999999853 22 2223332222 23568888887665443
No 232
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=26.42 E-value=1.4e+02 Score=23.20 Aligned_cols=49 Identities=14% Similarity=0.145 Sum_probs=28.6
Q ss_pred HHHHHhccCeEEEEecCCCCh---h---hHhhhhcccCCCCCCcEEEEEcCChhHHhh
Q 047158 13 MMSSRLLHRRVFVVLDNLDHI---D---QLKPLAGENKWFGSGSRIIITNRNEHLLKV 64 (212)
Q Consensus 13 ~l~~~L~~kr~LlvlDdv~~~---~---~~~~l~~~~~~~~~gs~iivTtR~~~~~~~ 64 (212)
.+...+....=+++||..... . .+..+...+. .+..||++|.+......
T Consensus 159 ~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~---~~~tvii~sh~~~~~~~ 213 (253)
T PRK14261 159 CIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLK---KEYTVIIVTHNMQQAAR 213 (253)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh---hCceEEEEEcCHHHHHh
Confidence 445555566778999998532 2 2222332232 23568888888776554
No 233
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=26.41 E-value=1.5e+02 Score=23.31 Aligned_cols=53 Identities=9% Similarity=0.026 Sum_probs=29.5
Q ss_pred HHHHHhccCeEEEEecCCCC---hhhHhhhhcccCCCCCCcEEEEEcCChhHHhhc
Q 047158 13 MMSSRLLHRRVFVVLDNLDH---IDQLKPLAGENKWFGSGSRIIITNRNEHLLKVF 65 (212)
Q Consensus 13 ~l~~~L~~kr~LlvlDdv~~---~~~~~~l~~~~~~~~~gs~iivTtR~~~~~~~~ 65 (212)
.+...+..+.=+++||.... ....+.+...+.....+..||++|.+......+
T Consensus 171 ~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~tiiivth~~~~~~~~ 226 (265)
T PRK14252 171 CIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNMQQAARV 226 (265)
T ss_pred HHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCEEEEEecCHHHHHHh
Confidence 45555666777899998853 222222222222112245688888887766543
No 234
>PF09840 DUF2067: Uncharacterized protein conserved in archaea (DUF2067); InterPro: IPR019202 This family of archaeal proteins, have no known function.
Probab=26.32 E-value=1.4e+02 Score=22.60 Aligned_cols=33 Identities=21% Similarity=0.340 Sum_probs=26.2
Q ss_pred HhhhhcCCcchhhHHHHhhccCceecCCCcEEe
Q 047158 164 KILQGCGFSSEIVFFVLTQRCLIVIDEDNRLKM 196 (212)
Q Consensus 164 ~~~~~~~~~~~~~l~~L~~~sll~~~~~~~~~m 196 (212)
..-...|..++..++++++.|++...++|+|.+
T Consensus 147 ~~s~~~g~~p~evie~~~e~Gll~~~E~~k~~L 179 (190)
T PF09840_consen 147 AVSYATGLDPEEVIEELLEKGLLEEGEDGKIEL 179 (190)
T ss_pred HHHHHhCCCHHHHHHHHHhCcccccCCCceEEE
Confidence 334447788888999999999999987777754
No 235
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=26.22 E-value=1.8e+02 Score=22.87 Aligned_cols=61 Identities=11% Similarity=0.047 Sum_probs=33.9
Q ss_pred HHHHHhccCeEEEEecCCCC---hhhHhhhhcccCC--CCCCcEEEEEcCChhHHhhcCCCceEeCC
Q 047158 13 MMSSRLLHRRVFVVLDNLDH---IDQLKPLAGENKW--FGSGSRIIITNRNEHLLKVFEVDGVCTVP 74 (212)
Q Consensus 13 ~l~~~L~~kr~LlvlDdv~~---~~~~~~l~~~~~~--~~~gs~iivTtR~~~~~~~~~~~~~~~l~ 74 (212)
.+...+..+.-+++||..-. ......+...+.. ...|..||++|.+......+ +.+++.++
T Consensus 160 ~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~-~d~i~~l~ 225 (261)
T PRK14258 160 CIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRL-SDFTAFFK 225 (261)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHh-cCEEEEEc
Confidence 44555556677889998853 2222223222221 11356788888888776654 24444444
No 236
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=26.19 E-value=3.9e+02 Score=23.21 Aligned_cols=66 Identities=15% Similarity=0.046 Sum_probs=43.9
Q ss_pred eEEEEecCCCCh-----------hhHhhhhcccCCCCCCcEEEEEcCChhHHhhcC------CCceEeCCCCChHHHHHH
Q 047158 22 RVFVVLDNLDHI-----------DQLKPLAGENKWFGSGSRIIITNRNEHLLKVFE------VDGVCTVPRLCLGKSFQL 84 (212)
Q Consensus 22 r~LlvlDdv~~~-----------~~~~~l~~~~~~~~~gs~iivTtR~~~~~~~~~------~~~~~~l~~l~~~~a~~L 84 (212)
+=+||+||.-.. .+|.+.+- ..+-.+||++|-+....+.+. .-+.+.|...+++.|.++
T Consensus 149 ~PVVVIdnF~~k~~~~~~iy~~laeWAa~Lv----~~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~y 224 (431)
T PF10443_consen 149 RPVVVIDNFLHKAEENDFIYDKLAEWAASLV----QNNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQY 224 (431)
T ss_pred CCEEEEcchhccCcccchHHHHHHHHHHHHH----hcCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHH
Confidence 568999998532 24554332 233457888887665554432 234688999999999999
Q ss_pred HHHhhcC
Q 047158 85 FSWHAFR 91 (212)
Q Consensus 85 l~~~~~~ 91 (212)
...+...
T Consensus 225 V~~~L~~ 231 (431)
T PF10443_consen 225 VLSQLDE 231 (431)
T ss_pred HHHHhcc
Confidence 8877643
No 237
>PRK00304 hypothetical protein; Provisional
Probab=26.03 E-value=1.3e+02 Score=19.15 Aligned_cols=28 Identities=7% Similarity=0.175 Sum_probs=22.8
Q ss_pred chHHHHHHHHHHhccCeEEEEecCCCCh
Q 047158 6 SIDRGLNMMSSRLLHRRVFVVLDNLDHI 33 (212)
Q Consensus 6 ~~~~~~~~l~~~L~~kr~LlvlDdv~~~ 33 (212)
+.++.++.++..|+....+|++|...+.
T Consensus 33 sL~~kv~qv~~qL~~G~~vIvfse~~es 60 (75)
T PRK00304 33 PLETRVLRVRQALTKGQAVILFDPESQQ 60 (75)
T ss_pred cHHHHHHHHHHHHHcCCEEEEECCCcce
Confidence 5677788889999999999999887653
No 238
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=26.03 E-value=1.4e+02 Score=23.19 Aligned_cols=50 Identities=14% Similarity=0.159 Sum_probs=28.5
Q ss_pred HHHHHhccCeEEEEecCCCCh---h---hHhhhhcccCCCCCCcEEEEEcCChhHHhhc
Q 047158 13 MMSSRLLHRRVFVVLDNLDHI---D---QLKPLAGENKWFGSGSRIIITNRNEHLLKVF 65 (212)
Q Consensus 13 ~l~~~L~~kr~LlvlDdv~~~---~---~~~~l~~~~~~~~~gs~iivTtR~~~~~~~~ 65 (212)
.+...+..+.=++++|..... . .+..++..+. .+..||++|.+......+
T Consensus 157 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~---~~~tiiivsH~~~~~~~~ 212 (251)
T PRK14270 157 CIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELK---KEYTIVIVTHNMQQASRV 212 (251)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH---hCCeEEEEEcCHHHHHHh
Confidence 444555566779999998632 2 2222222222 234588888887765543
No 239
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=25.98 E-value=58 Score=27.71 Aligned_cols=37 Identities=27% Similarity=0.522 Sum_probs=26.4
Q ss_pred HhccC---eEEEEecCCCC--hhhHhhhhcccCCCCCCcEEEEEc
Q 047158 17 RLLHR---RVFVVLDNLDH--IDQLKPLAGENKWFGSGSRIIITN 56 (212)
Q Consensus 17 ~L~~k---r~LlvlDdv~~--~~~~~~l~~~~~~~~~gs~iivTt 56 (212)
+++|+ +.++|+|.+-+ ..++..+.. ..|.||||+.|.
T Consensus 344 ~IRGRSl~~~FiIIDEaQNLTpheikTilt---R~G~GsKIVl~g 385 (436)
T COG1875 344 YIRGRSLPDSFIIIDEAQNLTPHELKTILT---RAGEGSKIVLTG 385 (436)
T ss_pred eecccccccceEEEehhhccCHHHHHHHHH---hccCCCEEEEcC
Confidence 34455 56999999986 456666653 367899999886
No 240
>PF13463 HTH_27: Winged helix DNA-binding domain; PDB: 3GFL_A 2YR2_B 3GFM_A 3GFJ_A 3GF2_A 3GEZ_A 2GXG_A 3GFI_A 2EB7_A.
Probab=25.97 E-value=48 Score=19.74 Aligned_cols=34 Identities=12% Similarity=0.056 Sum_probs=23.4
Q ss_pred CCCHHHHHHhhhhcCCcchhhHHHHhhccCceec
Q 047158 156 GMDKDYVLKILQGCGFSSEIVFFVLTQRCLIVID 189 (212)
Q Consensus 156 ~~~~~~l~~~~~~~~~~~~~~l~~L~~~sll~~~ 189 (212)
..+...+...+....-.....++.|+++++|+..
T Consensus 18 ~~t~~~l~~~~~~~~~~vs~~i~~L~~~glv~~~ 51 (68)
T PF13463_consen 18 PMTQSDLAERLGISKSTVSRIIKKLEEKGLVEKE 51 (68)
T ss_dssp -BEHHHHHHHTT--HHHHHHHHHHHHHTTSEEEE
T ss_pred CcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEec
Confidence 4666777777665544455679999999999765
No 241
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=25.85 E-value=2.5e+02 Score=22.46 Aligned_cols=59 Identities=8% Similarity=0.093 Sum_probs=32.5
Q ss_pred HHHHHhccCeEEEEecCCCCh---hhHhhhhcccCCCCCCcEEEEEcCChhHHhhcCCCceEeC
Q 047158 13 MMSSRLLHRRVFVVLDNLDHI---DQLKPLAGENKWFGSGSRIIITNRNEHLLKVFEVDGVCTV 73 (212)
Q Consensus 13 ~l~~~L~~kr~LlvlDdv~~~---~~~~~l~~~~~~~~~gs~iivTtR~~~~~~~~~~~~~~~l 73 (212)
.+.+.+..+.=++++|+.... .....+...+.....++.||++|.+...... +.+++.+
T Consensus 148 ~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~--~dri~vl 209 (275)
T cd03289 148 CLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEAMLE--CQRFLVI 209 (275)
T ss_pred HHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHh--CCEEEEe
Confidence 455566667778899998632 2222222222222236678888877665543 3444444
No 242
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=25.80 E-value=1.4e+02 Score=22.39 Aligned_cols=60 Identities=22% Similarity=0.201 Sum_probs=32.7
Q ss_pred HHHHHhccCeEEEEecCCCCh---hhHhhhhcccCCC-CCCcEEEEEcCChhHHhhcCCCceEeC
Q 047158 13 MMSSRLLHRRVFVVLDNLDHI---DQLKPLAGENKWF-GSGSRIIITNRNEHLLKVFEVDGVCTV 73 (212)
Q Consensus 13 ~l~~~L~~kr~LlvlDdv~~~---~~~~~l~~~~~~~-~~gs~iivTtR~~~~~~~~~~~~~~~l 73 (212)
.+...|..+.-+++||..-+. ...+.+...+... ..|..||++|.+......+ +.+++.+
T Consensus 144 ~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~-~d~i~~l 207 (211)
T cd03225 144 AIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLEL-ADRVIVL 207 (211)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHh-CCEEEEE
Confidence 445555666778999988532 2222222222111 1366799999887766553 2444443
No 243
>PRK15090 DNA-binding transcriptional regulator KdgR; Provisional
Probab=25.71 E-value=2.6e+02 Score=21.93 Aligned_cols=52 Identities=2% Similarity=-0.044 Sum_probs=38.1
Q ss_pred CCCHHHHHHhhhhcCCcchhhHHHHhhccCceecC-CCcEEecHHHHHHHHHH
Q 047158 156 GMDKDYVLKILQGCGFSSEIVFFVLTQRCLIVIDE-DNRLKMHDLIRDMKEKL 207 (212)
Q Consensus 156 ~~~~~~l~~~~~~~~~~~~~~l~~L~~~sll~~~~-~~~~~mH~lv~~~a~~~ 207 (212)
+++...+.+......-.....++.|++.+++.... +++|++-.-+-.++...
T Consensus 28 ~l~l~eia~~lgl~kstv~Rll~tL~~~G~l~~~~~~~~Y~lG~~~~~lg~~~ 80 (257)
T PRK15090 28 EIGITELSQRVMMSKSTVYRFLQTMKTLGYVAQEGESEKYSLTLKLFELGAKA 80 (257)
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEcCCCCcEEecHHHHHHHHHH
Confidence 36666666666655555677899999999998764 67788887776666543
No 244
>PF06794 UPF0270: Uncharacterised protein family (UPF0270); InterPro: IPR010648 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.; PDB: 1Y0N_A.
Probab=25.71 E-value=1.4e+02 Score=18.73 Aligned_cols=29 Identities=14% Similarity=0.272 Sum_probs=21.0
Q ss_pred cchHHHHHHHHHHhccCeEEEEecCCCCh
Q 047158 5 ESIDRGLNMMSSRLLHRRVFVVLDNLDHI 33 (212)
Q Consensus 5 ~~~~~~~~~l~~~L~~kr~LlvlDdv~~~ 33 (212)
.++++.++.++..|+.....|++|...+.
T Consensus 33 ~sL~~kv~qv~~qL~~G~avI~~se~~es 61 (70)
T PF06794_consen 33 LSLEEKVEQVKQQLKSGEAVIVFSELHES 61 (70)
T ss_dssp --HHHHHHHHHHHHHTTSEEEEE-TTT--
T ss_pred ccHHHHHHHHHHHHHcCCEEEEECCccCe
Confidence 35677788999999999999999987653
No 245
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=25.66 E-value=1.6e+02 Score=22.74 Aligned_cols=59 Identities=17% Similarity=0.191 Sum_probs=33.5
Q ss_pred HHHHHhccCeEEEEecCCCCh---h---hHhhhhcccCCCCCCcEEEEEcCChhHHhhcCCCceEeC
Q 047158 13 MMSSRLLHRRVFVVLDNLDHI---D---QLKPLAGENKWFGSGSRIIITNRNEHLLKVFEVDGVCTV 73 (212)
Q Consensus 13 ~l~~~L~~kr~LlvlDdv~~~---~---~~~~l~~~~~~~~~gs~iivTtR~~~~~~~~~~~~~~~l 73 (212)
.+...|..+.=+++||..-.. . .+..++..+. ..|..||++|.+........+..++.+
T Consensus 154 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~--~~~~tvi~vsH~~~~~~~~~~d~i~~l 218 (243)
T TIGR01978 154 EILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLR--EPDRSFLIITHYQRLLNYIKPDYVHVL 218 (243)
T ss_pred HHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHH--HCCcEEEEEEecHHHHHhhcCCeEEEE
Confidence 455556667778999998532 2 2222222222 135678999988877665423444433
No 246
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=25.63 E-value=1.4e+02 Score=22.43 Aligned_cols=52 Identities=8% Similarity=0.121 Sum_probs=29.2
Q ss_pred HHHHHhccCeEEEEecCCCC---hhhHhhhhcccCCC-CCCcEEEEEcCChhHHhh
Q 047158 13 MMSSRLLHRRVFVVLDNLDH---IDQLKPLAGENKWF-GSGSRIIITNRNEHLLKV 64 (212)
Q Consensus 13 ~l~~~L~~kr~LlvlDdv~~---~~~~~~l~~~~~~~-~~gs~iivTtR~~~~~~~ 64 (212)
.+...+..+.=+++||..-. ....+.+...+... ..|..||++|.+......
T Consensus 145 ~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~ 200 (213)
T cd03262 145 AIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFARE 200 (213)
T ss_pred HHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence 44555556677999999853 22222222222211 135568888888776554
No 247
>PF12793 SgrR_N: Sugar transport-related sRNA regulator N-term
Probab=25.54 E-value=2e+02 Score=19.79 Aligned_cols=54 Identities=13% Similarity=0.183 Sum_probs=40.3
Q ss_pred CCHHHHHHhhhhcCCcchhhHHHHhhccCceecC-CCc---------EEecHHHHHHHHHHHhc
Q 047158 157 MDKDYVLKILQGCGFSSEIVFFVLTQRCLIVIDE-DNR---------LKMHDLIRDMKEKLFAK 210 (212)
Q Consensus 157 ~~~~~l~~~~~~~~~~~~~~l~~L~~~sll~~~~-~~~---------~~mH~lv~~~a~~~~~~ 210 (212)
++.+.++..|....--+...++.|.+.+.|...+ .|+ ....+++.+.++....+
T Consensus 20 vtl~elA~~l~cS~Rn~r~lLkkm~~~gWi~W~pg~GRG~~S~L~~l~~~~~~~~~~~~~~l~~ 83 (115)
T PF12793_consen 20 VTLDELAELLFCSRRNARTLLKKMQEEGWITWQPGRGRGNRSQLTFLKSPEELLEQQAEELLEQ 83 (115)
T ss_pred eeHHHHHHHhCCCHHHHHHHHHHHHHCCCeeeeCCCCCCCCCeeEEeeCHHHHHHHHHHHHHHc
Confidence 7888999988776666677899999999999875 333 45556777777766544
No 248
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=25.41 E-value=2e+02 Score=22.83 Aligned_cols=58 Identities=12% Similarity=0.070 Sum_probs=32.9
Q ss_pred HHHHHhccCeEEEEecCCCCh---h---hHhhhhcccCCCCCCcEEEEEcCChhHHhhcCCCceEeCC
Q 047158 13 MMSSRLLHRRVFVVLDNLDHI---D---QLKPLAGENKWFGSGSRIIITNRNEHLLKVFEVDGVCTVP 74 (212)
Q Consensus 13 ~l~~~L~~kr~LlvlDdv~~~---~---~~~~l~~~~~~~~~gs~iivTtR~~~~~~~~~~~~~~~l~ 74 (212)
.+...|..+.=+++||..-.. . .+..++..+. .+..||++|.+...+..+ +.+++.+.
T Consensus 164 ~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~---~~~tiiivtH~~~~~~~~-~d~i~~l~ 227 (269)
T PRK14259 164 CIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELK---KNFTIVIVTHNMQQAVRV-SDMTAFFN 227 (269)
T ss_pred HHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh---cCCEEEEEeCCHHHHHHh-cCEEEEEe
Confidence 445555566778999998632 2 2222322222 245688888887666554 34555554
No 249
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=25.37 E-value=1.6e+02 Score=22.95 Aligned_cols=53 Identities=8% Similarity=0.031 Sum_probs=29.0
Q ss_pred HHHHHhccCeEEEEecCCCCh---hhHhhhhcccCCCCCCcEEEEEcCChhHHhhc
Q 047158 13 MMSSRLLHRRVFVVLDNLDHI---DQLKPLAGENKWFGSGSRIIITNRNEHLLKVF 65 (212)
Q Consensus 13 ~l~~~L~~kr~LlvlDdv~~~---~~~~~l~~~~~~~~~gs~iivTtR~~~~~~~~ 65 (212)
.+...|..+.-++++|+.-.. .....+...+.....+..||++|.+.......
T Consensus 156 ~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~ 211 (250)
T PRK14266 156 CIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQATRV 211 (250)
T ss_pred HHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEECCHHHHHhh
Confidence 455556667789999998632 22222222222112355688888776655443
No 250
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=25.35 E-value=1.4e+02 Score=22.32 Aligned_cols=54 Identities=26% Similarity=0.330 Sum_probs=31.7
Q ss_pred HHHHHHHhccCeEEEEecCCCC---hhhHhhhhcccCCC-CCCcEEEEEcCChhHHhh
Q 047158 11 LNMMSSRLLHRRVFVVLDNLDH---IDQLKPLAGENKWF-GSGSRIIITNRNEHLLKV 64 (212)
Q Consensus 11 ~~~l~~~L~~kr~LlvlDdv~~---~~~~~~l~~~~~~~-~~gs~iivTtR~~~~~~~ 64 (212)
.-.+...+..+.=++++|+.-. ....+.+...+... ..|..||++|.+......
T Consensus 112 rv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~~ 169 (200)
T cd03217 112 RNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLDY 169 (200)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHH
Confidence 3356666667778999999853 22222222222211 135678999988876653
No 251
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=25.33 E-value=6.6e+02 Score=24.71 Aligned_cols=21 Identities=0% Similarity=-0.296 Sum_probs=17.6
Q ss_pred eEeCCCCChHHHHHHHHHhhc
Q 047158 70 VCTVPRLCLGKSFQLFSWHAF 90 (212)
Q Consensus 70 ~~~l~~l~~~~a~~Ll~~~~~ 90 (212)
.+..+|.+.++-.+++...+-
T Consensus 930 eIvF~PYTaEQL~dILk~RAe 950 (1164)
T PTZ00112 930 RLVFSPYKGDEIEKIIKERLE 950 (1164)
T ss_pred cccCCCCCHHHHHHHHHHHHH
Confidence 366799999999999988774
No 252
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=25.29 E-value=2.1e+02 Score=22.87 Aligned_cols=54 Identities=13% Similarity=0.196 Sum_probs=36.6
Q ss_pred HHHHHHHHhccCeEEEEecCCCC------hhhHhhhhcccCCCCCCcEEEEEcCChhHHhhc
Q 047158 10 GLNMMSSRLLHRRVFVVLDNLDH------IDQLKPLAGENKWFGSGSRIIITNRNEHLLKVF 65 (212)
Q Consensus 10 ~~~~l~~~L~~kr~LlvlDdv~~------~~~~~~l~~~~~~~~~gs~iivTtR~~~~~~~~ 65 (212)
..-.+.+.|..+.=|++||.--. ...+-.++..+... |+.||++|.+-......
T Consensus 146 QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e--g~tIl~vtHDL~~v~~~ 205 (254)
T COG1121 146 QRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQE--GKTVLMVTHDLGLVMAY 205 (254)
T ss_pred HHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC--CCEEEEEeCCcHHhHhh
Confidence 34467788888999999997532 22344444444432 88899999988776553
No 253
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=25.19 E-value=1.7e+02 Score=21.91 Aligned_cols=53 Identities=11% Similarity=0.274 Sum_probs=30.4
Q ss_pred HHHHHhccCeEEEEecCCCC---hhhHhhhhcccCCC-CCCcEEEEEcCChhHHhhc
Q 047158 13 MMSSRLLHRRVFVVLDNLDH---IDQLKPLAGENKWF-GSGSRIIITNRNEHLLKVF 65 (212)
Q Consensus 13 ~l~~~L~~kr~LlvlDdv~~---~~~~~~l~~~~~~~-~~gs~iivTtR~~~~~~~~ 65 (212)
.+...+..+.-+++||..-. ....+.+...+... ..|..||++|.+......+
T Consensus 136 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~ 192 (205)
T cd03226 136 AIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKV 192 (205)
T ss_pred HHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHh
Confidence 45555666778999999853 22222222222211 2356699999887765543
No 254
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=25.14 E-value=3.2e+02 Score=25.48 Aligned_cols=68 Identities=16% Similarity=0.146 Sum_probs=37.6
Q ss_pred cCeEEEEecCCCCh-----------hhHhhhhcccCCCCCCcEEEEEcCChhHHhhcC-------CCceEeCCCCChHHH
Q 047158 20 HRRVFVVLDNLDHI-----------DQLKPLAGENKWFGSGSRIIITNRNEHLLKVFE-------VDGVCTVPRLCLGKS 81 (212)
Q Consensus 20 ~kr~LlvlDdv~~~-----------~~~~~l~~~~~~~~~gs~iivTtR~~~~~~~~~-------~~~~~~l~~l~~~~a 81 (212)
.++.+|++|+++.. +.-+.+.+.+. .+. -.+|-+|.......... --..+.+++++.++.
T Consensus 273 ~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~-~g~-i~~IgaTt~~e~~~~~~~d~al~rRf~~i~v~~p~~~~~ 350 (731)
T TIGR02639 273 EPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALS-SGK-LRCIGSTTYEEYKNHFEKDRALSRRFQKIDVGEPSIEET 350 (731)
T ss_pred cCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHh-CCC-eEEEEecCHHHHHHHhhhhHHHHHhCceEEeCCCCHHHH
Confidence 45789999999732 11233444333 222 23444444322211111 123689999999999
Q ss_pred HHHHHHhh
Q 047158 82 FQLFSWHA 89 (212)
Q Consensus 82 ~~Ll~~~~ 89 (212)
.+++....
T Consensus 351 ~~il~~~~ 358 (731)
T TIGR02639 351 VKILKGLK 358 (731)
T ss_pred HHHHHHHH
Confidence 99998543
No 255
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=25.12 E-value=1.5e+02 Score=23.77 Aligned_cols=40 Identities=15% Similarity=0.152 Sum_probs=26.6
Q ss_pred CeEEEEecCCCCh--hhHhhhhcccCCCCCCcEEEEEcCChh
Q 047158 21 RRVFVVLDNLDHI--DQLKPLAGENKWFGSGSRIIITNRNEH 60 (212)
Q Consensus 21 kr~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~iivTtR~~~ 60 (212)
++=.+|+++++.. ....+++-.+-+..+++.+|++|.+..
T Consensus 88 ~~KV~II~~ae~m~~~AaNaLLK~LEEPp~~t~fiLit~~~~ 129 (261)
T PRK05818 88 GKKIYIIYGIEKLNKQSANSLLKLIEEPPKNTYGIFTTRNEN 129 (261)
T ss_pred CCEEEEeccHhhhCHHHHHHHHHhhcCCCCCeEEEEEECChH
Confidence 3456688999854 456777766665556777777776553
No 256
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=25.02 E-value=1.3e+02 Score=23.26 Aligned_cols=53 Identities=9% Similarity=0.003 Sum_probs=30.5
Q ss_pred HHHHHhccCeEEEEecCCCC---hhhHhhhhcccCCC--CCCcEEEEEcCChhHHhhc
Q 047158 13 MMSSRLLHRRVFVVLDNLDH---IDQLKPLAGENKWF--GSGSRIIITNRNEHLLKVF 65 (212)
Q Consensus 13 ~l~~~L~~kr~LlvlDdv~~---~~~~~~l~~~~~~~--~~gs~iivTtR~~~~~~~~ 65 (212)
.+...+..+.=++++|.... ....+.+...+... ..|..||++|.+...+..+
T Consensus 140 ~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~ 197 (237)
T TIGR00968 140 ALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEV 197 (237)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhh
Confidence 44555556677899999863 22222232222221 1256789999888765543
No 257
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=24.88 E-value=1.7e+02 Score=23.44 Aligned_cols=60 Identities=12% Similarity=0.046 Sum_probs=32.2
Q ss_pred HHHHHhccCeEEEEecCCCC---hhhHhhhhcccCCCCCCcEEEEEcCChhHHhhcCCCceEeC
Q 047158 13 MMSSRLLHRRVFVVLDNLDH---IDQLKPLAGENKWFGSGSRIIITNRNEHLLKVFEVDGVCTV 73 (212)
Q Consensus 13 ~l~~~L~~kr~LlvlDdv~~---~~~~~~l~~~~~~~~~gs~iivTtR~~~~~~~~~~~~~~~l 73 (212)
.+...|..+.-+++||..-. ......+...+.....+..||++|.+......+ +.+++.+
T Consensus 192 ~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIivsH~~~~~~~~-~d~i~~L 254 (286)
T PRK14275 192 CVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQASRV-SDYTMFF 254 (286)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHh-CCEEEEE
Confidence 44555556677899998853 222222222222111245688888887776553 2344433
No 258
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=24.73 E-value=2e+02 Score=24.98 Aligned_cols=72 Identities=15% Similarity=0.175 Sum_probs=43.2
Q ss_pred hccCeEEEEecCCCChh----------------hHhhhhcccCC--CCCCcEEEEEcCChhHHhhc-----CCCceEeCC
Q 047158 18 LLHRRVFVVLDNLDHID----------------QLKPLAGENKW--FGSGSRIIITNRNEHLLKVF-----EVDGVCTVP 74 (212)
Q Consensus 18 L~~kr~LlvlDdv~~~~----------------~~~~l~~~~~~--~~~gs~iivTtR~~~~~~~~-----~~~~~~~l~ 74 (212)
..+.+.+|++|+++... .+-.++..+.. ...+..||.||......... .....+.++
T Consensus 273 ~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~ 352 (438)
T PTZ00361 273 EENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRIESLDPALIRPGRIDRKIEFP 352 (438)
T ss_pred HhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCChHHhhHHhccCCeeEEEEEeC
Confidence 34567899999986321 01112211111 12355788888765554332 124578899
Q ss_pred CCChHHHHHHHHHhh
Q 047158 75 RLCLGKSFQLFSWHA 89 (212)
Q Consensus 75 ~l~~~~a~~Ll~~~~ 89 (212)
..+.++-.++|..+.
T Consensus 353 ~Pd~~~R~~Il~~~~ 367 (438)
T PTZ00361 353 NPDEKTKRRIFEIHT 367 (438)
T ss_pred CCCHHHHHHHHHHHH
Confidence 999999999998765
No 259
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=24.73 E-value=1.8e+02 Score=22.01 Aligned_cols=60 Identities=13% Similarity=0.255 Sum_probs=32.4
Q ss_pred HHHHHhccCeEEEEecCCCC---hhhHhhhhcccCCC-CCCcEEEEEcCChhHHhhcCCCceEeC
Q 047158 13 MMSSRLLHRRVFVVLDNLDH---IDQLKPLAGENKWF-GSGSRIIITNRNEHLLKVFEVDGVCTV 73 (212)
Q Consensus 13 ~l~~~L~~kr~LlvlDdv~~---~~~~~~l~~~~~~~-~~gs~iivTtR~~~~~~~~~~~~~~~l 73 (212)
.+...+..+.=++++|..-. ....+.+...+... ..|..||++|.+......+ +.+++.+
T Consensus 142 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~-~d~i~~l 205 (222)
T cd03224 142 AIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEI-ADRAYVL 205 (222)
T ss_pred HHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHh-ccEEEEe
Confidence 44455556677899999853 22222222222111 1466799999887765543 2344443
No 260
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=24.70 E-value=2e+02 Score=22.68 Aligned_cols=57 Identities=16% Similarity=0.097 Sum_probs=31.7
Q ss_pred HHHHHhccCeEEEEecCCCCh---h---hHhhhhcccCCCCCCcEEEEEcCChhHHhhcCCCceEeC
Q 047158 13 MMSSRLLHRRVFVVLDNLDHI---D---QLKPLAGENKWFGSGSRIIITNRNEHLLKVFEVDGVCTV 73 (212)
Q Consensus 13 ~l~~~L~~kr~LlvlDdv~~~---~---~~~~l~~~~~~~~~gs~iivTtR~~~~~~~~~~~~~~~l 73 (212)
.+...|..+.=+++||..-.. . .+..++..+.. +..||++|.+......+ +.+++.+
T Consensus 161 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~---~~tvi~vtH~~~~~~~~-~d~v~~l 223 (264)
T PRK14243 161 CIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKE---QYTIIIVTHNMQQAARV-SDMTAFF 223 (264)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc---CCEEEEEecCHHHHHHh-CCEEEEE
Confidence 444455556678999988532 2 23333333322 34688888877665554 2445544
No 261
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=24.50 E-value=1.9e+02 Score=21.76 Aligned_cols=60 Identities=10% Similarity=0.191 Sum_probs=32.3
Q ss_pred HHHHHhccCeEEEEecCCCC---hhhHhhhhcccCCC-CCCcEEEEEcCChhHHhhcCCCceEeC
Q 047158 13 MMSSRLLHRRVFVVLDNLDH---IDQLKPLAGENKWF-GSGSRIIITNRNEHLLKVFEVDGVCTV 73 (212)
Q Consensus 13 ~l~~~L~~kr~LlvlDdv~~---~~~~~~l~~~~~~~-~~gs~iivTtR~~~~~~~~~~~~~~~l 73 (212)
.+...+..+.-+++||..-. ....+.+...+... ..|..||++|.+......+ +..++.+
T Consensus 146 ~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~-~d~i~~l 209 (214)
T cd03292 146 AIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTT-RHRVIAL 209 (214)
T ss_pred HHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHh-CCEEEEE
Confidence 44555556677999999853 22222222222111 1356788888887766543 2344443
No 262
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=24.37 E-value=3.9e+02 Score=24.49 Aligned_cols=79 Identities=16% Similarity=0.148 Sum_probs=45.1
Q ss_pred HHHHHhccCeEEEEecCCCChh----------------hHhhhhcccCC--CCCCcEEEEEcCChhHHhhc-----CCCc
Q 047158 13 MMSSRLLHRRVFVVLDNLDHID----------------QLKPLAGENKW--FGSGSRIIITNRNEHLLKVF-----EVDG 69 (212)
Q Consensus 13 ~l~~~L~~kr~LlvlDdv~~~~----------------~~~~l~~~~~~--~~~gs~iivTtR~~~~~~~~-----~~~~ 69 (212)
.+...-....+.|++|+++... .+..++..+.. ...+.-||.||...+..... -...
T Consensus 236 ~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr 315 (644)
T PRK10733 236 MFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDR 315 (644)
T ss_pred HHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHhCCcccce
Confidence 3444434567899999997531 12223222221 12344555677665543221 1246
Q ss_pred eEeCCCCChHHHHHHHHHhhcC
Q 047158 70 VCTVPRLCLGKSFQLFSWHAFR 91 (212)
Q Consensus 70 ~~~l~~l~~~~a~~Ll~~~~~~ 91 (212)
.+.++..+.++-.+++..+...
T Consensus 316 ~i~v~~Pd~~~R~~Il~~~~~~ 337 (644)
T PRK10733 316 QVVVGLPDVRGREQILKVHMRR 337 (644)
T ss_pred EEEcCCCCHHHHHHHHHHHhhc
Confidence 6888889988888888877643
No 263
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=24.20 E-value=2e+02 Score=21.74 Aligned_cols=58 Identities=12% Similarity=0.306 Sum_probs=33.1
Q ss_pred HHHHHhccCeEEEEecCCCCh---h---hHhhhhcccCCCCCCcEEEEEcCChhHHhhcCCCceEeC
Q 047158 13 MMSSRLLHRRVFVVLDNLDHI---D---QLKPLAGENKWFGSGSRIIITNRNEHLLKVFEVDGVCTV 73 (212)
Q Consensus 13 ~l~~~L~~kr~LlvlDdv~~~---~---~~~~l~~~~~~~~~gs~iivTtR~~~~~~~~~~~~~~~l 73 (212)
.+...|..+.=+++||..-.. . .+..+...+. ..|..||++|.+......+ +.+++.+
T Consensus 148 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~--~~~~tii~vsH~~~~~~~~-~d~i~~l 211 (216)
T TIGR00960 148 AIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFN--RRGTTVLVATHDINLVETY-RHRTLTL 211 (216)
T ss_pred HHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHH--HCCCEEEEEeCCHHHHHHh-CCEEEEE
Confidence 455666667778999988532 2 2222222222 2356689999887766543 2344443
No 264
>PRK10869 recombination and repair protein; Provisional
Probab=24.16 E-value=2.9e+02 Score=24.84 Aligned_cols=43 Identities=7% Similarity=0.115 Sum_probs=25.9
Q ss_pred eEEEEecCCCCh---hhHhhhhcccCCCCCCcEEEEEcCChhHHhh
Q 047158 22 RVFVVLDNLDHI---DQLKPLAGENKWFGSGSRIIITNRNEHLLKV 64 (212)
Q Consensus 22 r~LlvlDdv~~~---~~~~~l~~~~~~~~~gs~iivTtR~~~~~~~ 64 (212)
.=++|||.++.. .....+...+.....+..||+.|.+..++..
T Consensus 453 ~~~li~DEpd~gld~~~~~~v~~~l~~l~~~~qvi~iTH~~~~~~~ 498 (553)
T PRK10869 453 TPALIFDEVDVGISGPTAAVVGKLLRQLGESTQVMCVTHLPQVAGC 498 (553)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHh
Confidence 458899999743 2222222222222235679999999888754
No 265
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=24.04 E-value=1.4e+02 Score=22.85 Aligned_cols=53 Identities=6% Similarity=-0.004 Sum_probs=30.1
Q ss_pred HHHHHhccCeEEEEecCCCC---hhhHhhhhcccCCC--CCCcEEEEEcCChhHHhhc
Q 047158 13 MMSSRLLHRRVFVVLDNLDH---IDQLKPLAGENKWF--GSGSRIIITNRNEHLLKVF 65 (212)
Q Consensus 13 ~l~~~L~~kr~LlvlDdv~~---~~~~~~l~~~~~~~--~~gs~iivTtR~~~~~~~~ 65 (212)
.+...+..+.=+++||.... ....+.+...+... ..|..||++|.+......+
T Consensus 139 ~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~ 196 (232)
T PRK10771 139 ALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARI 196 (232)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHh
Confidence 44455556677889998753 22222222222211 2256799999888866553
No 266
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=23.93 E-value=1.6e+02 Score=22.25 Aligned_cols=52 Identities=8% Similarity=0.043 Sum_probs=29.7
Q ss_pred HHHHHhccCeEEEEecCCCCh---hhHhhhhcccCCC--CCCcEEEEEcCChhHHhh
Q 047158 13 MMSSRLLHRRVFVVLDNLDHI---DQLKPLAGENKWF--GSGSRIIITNRNEHLLKV 64 (212)
Q Consensus 13 ~l~~~L~~kr~LlvlDdv~~~---~~~~~l~~~~~~~--~~gs~iivTtR~~~~~~~ 64 (212)
.+...+..+.-++++|..... ...+.+...+... ..|..||++|.+......
T Consensus 138 ~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~ 194 (213)
T TIGR01277 138 ALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARA 194 (213)
T ss_pred HHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHh
Confidence 445555667779999998532 2222222222211 235678999988776544
No 267
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=23.91 E-value=2e+02 Score=22.69 Aligned_cols=60 Identities=8% Similarity=-0.006 Sum_probs=32.6
Q ss_pred HHHHHhccCeEEEEecCCCCh---hhHhhhhcccCCCCCCcEEEEEcCChhHHhhcCCCceEeC
Q 047158 13 MMSSRLLHRRVFVVLDNLDHI---DQLKPLAGENKWFGSGSRIIITNRNEHLLKVFEVDGVCTV 73 (212)
Q Consensus 13 ~l~~~L~~kr~LlvlDdv~~~---~~~~~l~~~~~~~~~gs~iivTtR~~~~~~~~~~~~~~~l 73 (212)
.+...+..+.=++++|..-.. ..-..+...+.....+..||++|.+....... +.+++.+
T Consensus 159 ~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~-~d~v~~l 221 (261)
T PRK14263 159 CIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHNMQQAIRV-ADTTAFF 221 (261)
T ss_pred HHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHh-CCEEEEE
Confidence 455566667788999998532 22122222222112346688888888765543 2344444
No 268
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=23.90 E-value=1.3e+02 Score=23.00 Aligned_cols=53 Identities=9% Similarity=0.138 Sum_probs=30.3
Q ss_pred HHHHHhccCeEEEEecCCCCh---hhHhhhhcccCCC--CCCcEEEEEcCChhHHhhc
Q 047158 13 MMSSRLLHRRVFVVLDNLDHI---DQLKPLAGENKWF--GSGSRIIITNRNEHLLKVF 65 (212)
Q Consensus 13 ~l~~~L~~kr~LlvlDdv~~~---~~~~~l~~~~~~~--~~gs~iivTtR~~~~~~~~ 65 (212)
.+...+..+.-+++||..-.. ..-..+...+... ..|..||++|.+......+
T Consensus 150 ~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~ 207 (233)
T cd03258 150 GIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRI 207 (233)
T ss_pred HHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHh
Confidence 445555667778999998632 2222222222211 1266799999888765543
No 269
>PRK10908 cell division protein FtsE; Provisional
Probab=23.74 E-value=1.8e+02 Score=22.05 Aligned_cols=51 Identities=10% Similarity=0.143 Sum_probs=30.2
Q ss_pred HHHHHhccCeEEEEecCCCCh---h---hHhhhhcccCCCCCCcEEEEEcCChhHHhhc
Q 047158 13 MMSSRLLHRRVFVVLDNLDHI---D---QLKPLAGENKWFGSGSRIIITNRNEHLLKVF 65 (212)
Q Consensus 13 ~l~~~L~~kr~LlvlDdv~~~---~---~~~~l~~~~~~~~~gs~iivTtR~~~~~~~~ 65 (212)
.+...+..+.-+++||..-.. . .+..+...+. ..|..||++|.+.......
T Consensus 147 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~--~~~~tiii~sH~~~~~~~~ 203 (222)
T PRK10908 147 GIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFN--RVGVTVLMATHDIGLISRR 203 (222)
T ss_pred HHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHH--HCCCEEEEEeCCHHHHHHh
Confidence 455555667779999988532 2 2222222222 2356799999887766554
No 270
>PRK11534 DNA-binding transcriptional regulator CsiR; Provisional
Probab=23.59 E-value=1.5e+02 Score=22.63 Aligned_cols=40 Identities=5% Similarity=-0.050 Sum_probs=31.4
Q ss_pred CCHHHHHHhhhhcCCcchhhHHHHhhccCceecCCCcEEe
Q 047158 157 MDKDYVLKILQGCGFSSEIVFFVLTQRCLIVIDEDNRLKM 196 (212)
Q Consensus 157 ~~~~~l~~~~~~~~~~~~~~l~~L~~~sll~~~~~~~~~m 196 (212)
++...|...++.+.-....++..|...|||+..++..+.+
T Consensus 31 L~e~eLae~lgVSRtpVREAL~~L~~eGlv~~~~~~G~~V 70 (224)
T PRK11534 31 LRMSLLTSRYALGVGPLREALSQLVAERLVTVVNQKGYRV 70 (224)
T ss_pred CCHHHHHHHHCCChHHHHHHHHHHHHCCCEEEeCCCceEe
Confidence 7888888887777767788999999999999876444433
No 271
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=23.52 E-value=2.5e+02 Score=23.16 Aligned_cols=140 Identities=16% Similarity=0.087 Sum_probs=83.3
Q ss_pred EEEEcCChhHHhhcC--CCceEeCCCCChHHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCCCch-h----hhc----
Q 047158 52 IIITNRNEHLLKVFE--VDGVCTVPRLCLGKSFQLFSWHAFRKDKPPQRFMKLSRELLRCAEGLPLE-E----KLK---- 120 (212)
Q Consensus 52 iivTtR~~~~~~~~~--~~~~~~l~~l~~~~a~~Ll~~~~~~~~~~~~~~~~~~~~i~~~c~glPLa-~----~l~---- 120 (212)
|=.|||--.+...+. ..-+.+++.-+.+|-.++..+.+..-.. +-.++.+.+|+++..|-|-- . +.+
T Consensus 155 IGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i--~i~~~~a~eIA~rSRGTPRIAnRLLrRVRDfa~ 232 (332)
T COG2255 155 IGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGI--EIDEEAALEIARRSRGTPRIANRLLRRVRDFAQ 232 (332)
T ss_pred eeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCC--CCChHHHHHHHHhccCCcHHHHHHHHHHHHHHH
Confidence 335777544333322 2446778888899999998877722111 12245678899999998854 1 111
Q ss_pred --cC---Cc---hhHHHHHHHhhcCCCCchhhhHHhhhhccC-C-CCCHHHHHHhhhhcCCcchhhH-HHHhhccCceec
Q 047158 121 --RI---PN---EEILNKLRVSFDVLNDDEEKNVFMDIAHLF-V-GMDKDYVLKILQGCGFSSEIVF-FVLTQRCLIVID 189 (212)
Q Consensus 121 --~~---~~---~~v~~~l~~s~~~L~~~~~~~~~~~la~f~-~-~~~~~~l~~~~~~~~~~~~~~l-~~L~~~sll~~~ 189 (212)
.. .. ......+.+-=..| +.-.++.+..+.-.+ . ++..+.+......+....+..+ =-|++.+|++..
T Consensus 233 V~~~~~I~~~ia~~aL~~L~Vd~~GL-d~~D~k~L~~li~~f~GgPVGl~tia~~lge~~~TiEdv~EPyLiq~gfi~RT 311 (332)
T COG2255 233 VKGDGDIDRDIADKALKMLDVDELGL-DEIDRKYLRALIEQFGGGPVGLDTIAAALGEDRDTIEDVIEPYLIQQGFIQRT 311 (332)
T ss_pred HhcCCcccHHHHHHHHHHhCcccccc-cHHHHHHHHHHHHHhCCCCccHHHHHHHhcCchhHHHHHHhHHHHHhchhhhC
Confidence 11 00 11334444444466 666666666555444 3 3888887777766544444433 348999999998
Q ss_pred CCCcE
Q 047158 190 EDNRL 194 (212)
Q Consensus 190 ~~~~~ 194 (212)
..|+.
T Consensus 312 pRGR~ 316 (332)
T COG2255 312 PRGRI 316 (332)
T ss_pred CCcce
Confidence 88874
No 272
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=23.43 E-value=1.5e+02 Score=22.25 Aligned_cols=53 Identities=17% Similarity=0.165 Sum_probs=30.5
Q ss_pred HHHHHhccCeEEEEecCCCCh---hhHhhhhcccCCC-CCCcEEEEEcCChhHHhhc
Q 047158 13 MMSSRLLHRRVFVVLDNLDHI---DQLKPLAGENKWF-GSGSRIIITNRNEHLLKVF 65 (212)
Q Consensus 13 ~l~~~L~~kr~LlvlDdv~~~---~~~~~l~~~~~~~-~~gs~iivTtR~~~~~~~~ 65 (212)
.+...+..+.-+++||..-.. ...+.+...+... ..|..||++|.+.......
T Consensus 136 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~ 192 (208)
T cd03268 136 GIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKV 192 (208)
T ss_pred HHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHh
Confidence 455556666779999998532 2222222222211 1356799999888766543
No 273
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=23.36 E-value=1.4e+02 Score=22.58 Aligned_cols=52 Identities=15% Similarity=0.114 Sum_probs=29.9
Q ss_pred HHHHHhccCeEEEEecCCCCh---hhHhhhhcccCCC--CCCcEEEEEcCChhHHhh
Q 047158 13 MMSSRLLHRRVFVVLDNLDHI---DQLKPLAGENKWF--GSGSRIIITNRNEHLLKV 64 (212)
Q Consensus 13 ~l~~~L~~kr~LlvlDdv~~~---~~~~~l~~~~~~~--~~gs~iivTtR~~~~~~~ 64 (212)
.+...|..+.-+++||..-.. .....+...+... ..|..||++|.+......
T Consensus 140 ~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~ 196 (213)
T cd03259 140 ALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALA 196 (213)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHH
Confidence 455566667789999998532 2222222222211 125678899988765544
No 274
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=23.32 E-value=1.7e+02 Score=22.66 Aligned_cols=51 Identities=14% Similarity=0.143 Sum_probs=30.4
Q ss_pred HHHHHhccCeEEEEecCCCCh---h---hHhhhhcccCCCCCCcEEEEEcCChhHHhhc
Q 047158 13 MMSSRLLHRRVFVVLDNLDHI---D---QLKPLAGENKWFGSGSRIIITNRNEHLLKVF 65 (212)
Q Consensus 13 ~l~~~L~~kr~LlvlDdv~~~---~---~~~~l~~~~~~~~~gs~iivTtR~~~~~~~~ 65 (212)
.+...+..+.=+++||..-.. . .+..+...+. ..|..||++|.+.......
T Consensus 155 ~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~--~~~~tiii~sH~~~~~~~~ 211 (248)
T PRK09580 155 DILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLR--DGKRSFIIVTHYQRILDYI 211 (248)
T ss_pred HHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHH--hCCCEEEEEeCCHHHHHhh
Confidence 455556666778899998632 2 2222222222 2356799999987766553
No 275
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=23.26 E-value=1.4e+02 Score=23.43 Aligned_cols=53 Identities=8% Similarity=0.142 Sum_probs=30.7
Q ss_pred HHHHHhccCeEEEEecCCCCh---hhHhhhhcccCCC--CCCcEEEEEcCChhHHhhc
Q 047158 13 MMSSRLLHRRVFVVLDNLDHI---DQLKPLAGENKWF--GSGSRIIITNRNEHLLKVF 65 (212)
Q Consensus 13 ~l~~~L~~kr~LlvlDdv~~~---~~~~~l~~~~~~~--~~gs~iivTtR~~~~~~~~ 65 (212)
.+...+..+.-+++||.-... ...+.+...+... ..|..||++|.+...+..+
T Consensus 162 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~ 219 (262)
T PRK09984 162 AIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRY 219 (262)
T ss_pred HHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh
Confidence 455556667779999998532 2222222222221 1256799999888765443
No 276
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=23.18 E-value=2.1e+02 Score=20.83 Aligned_cols=51 Identities=20% Similarity=0.257 Sum_probs=31.6
Q ss_pred HHHHHhccCeEEEEecCCCCh---h---hHhhhhcccCCCCCCcEEEEEcCChhHHhhc
Q 047158 13 MMSSRLLHRRVFVVLDNLDHI---D---QLKPLAGENKWFGSGSRIIITNRNEHLLKVF 65 (212)
Q Consensus 13 ~l~~~L~~kr~LlvlDdv~~~---~---~~~~l~~~~~~~~~gs~iivTtR~~~~~~~~ 65 (212)
.+...+..+.=++++|..... . .+..+...+.. .|..||++|.+......+
T Consensus 105 ~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~--~g~tiii~th~~~~~~~~ 161 (173)
T cd03230 105 ALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKK--EGKTILLSSHILEEAERL 161 (173)
T ss_pred HHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH--CCCEEEEECCCHHHHHHh
Confidence 566677778889999998532 2 22222222221 356799999888766543
No 277
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=22.98 E-value=1.3e+02 Score=23.30 Aligned_cols=46 Identities=13% Similarity=0.122 Sum_probs=29.0
Q ss_pred cCeEEEEecCCC---Chhh----HhhhhcccCCCCCCcEEEEEcCChhHHhhcC
Q 047158 20 HRRVFVVLDNLD---HIDQ----LKPLAGENKWFGSGSRIIITNRNEHLLKVFE 66 (212)
Q Consensus 20 ~kr~LlvlDdv~---~~~~----~~~l~~~~~~~~~gs~iivTtR~~~~~~~~~ 66 (212)
+++.|+++|..- +..+ ...+...+.. ..++.+|++|.+..+.....
T Consensus 108 ~~~sLvLlDE~~~Gt~~~dg~~la~ail~~L~~-~~~~~~i~~TH~~el~~~~~ 160 (218)
T cd03286 108 TPDSLVILDELGRGTSTHDGYAIAHAVLEYLVK-KVKCLTLFSTHYHSLCDEFH 160 (218)
T ss_pred CCCeEEEEecccCCCCchHHHHHHHHHHHHHHH-hcCCcEEEEeccHHHHHHhh
Confidence 578999999983 2222 1222223321 23788999999988876653
No 278
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=22.89 E-value=1.9e+02 Score=22.50 Aligned_cols=49 Identities=16% Similarity=0.185 Sum_probs=28.1
Q ss_pred HHHHHhccCeEEEEecCCCCh---h---hHhhhhcccCCCCCCcEEEEEcCChhHHhh
Q 047158 13 MMSSRLLHRRVFVVLDNLDHI---D---QLKPLAGENKWFGSGSRIIITNRNEHLLKV 64 (212)
Q Consensus 13 ~l~~~L~~kr~LlvlDdv~~~---~---~~~~l~~~~~~~~~gs~iivTtR~~~~~~~ 64 (212)
.+...+..+.=+++||..-.. . .+..++..+. .+..||++|.+......
T Consensus 158 ~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~---~~~tiiivsH~~~~~~~ 212 (252)
T PRK14256 158 CIARTIAVKPEVILMDEPASALDPISTLKIEELIEELK---EKYTIIIVTHNMQQAAR 212 (252)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH---hCCcEEEEECCHHHHHh
Confidence 455555566778999998532 2 2222332332 23458888887766544
No 279
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=22.73 E-value=1.8e+02 Score=21.19 Aligned_cols=57 Identities=18% Similarity=0.261 Sum_probs=32.4
Q ss_pred HHHHHhccCeEEEEecCCCC---hh---hHhhhhcccCCCCCCcEEEEEcCChhHHhhcCCCceEeC
Q 047158 13 MMSSRLLHRRVFVVLDNLDH---ID---QLKPLAGENKWFGSGSRIIITNRNEHLLKVFEVDGVCTV 73 (212)
Q Consensus 13 ~l~~~L~~kr~LlvlDdv~~---~~---~~~~l~~~~~~~~~gs~iivTtR~~~~~~~~~~~~~~~l 73 (212)
.+...+..+.=+++||.... .. .+..+...+. ..|..||++|.+..... . +.+++.+
T Consensus 106 ~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~--~~~~tii~~sh~~~~~~-~-~d~v~~l 168 (173)
T cd03246 106 GLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALK--AAGATRIVIAHRPETLA-S-ADRILVL 168 (173)
T ss_pred HHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHH--hCCCEEEEEeCCHHHHH-h-CCEEEEE
Confidence 45555666667889998853 22 2222222222 23667889998877664 2 4454444
No 280
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=22.71 E-value=1.9e+02 Score=22.98 Aligned_cols=53 Identities=11% Similarity=0.028 Sum_probs=28.8
Q ss_pred HHHHHhccCeEEEEecCCCCh---hhHhhhhcccCCCCCCcEEEEEcCChhHHhhc
Q 047158 13 MMSSRLLHRRVFVVLDNLDHI---DQLKPLAGENKWFGSGSRIIITNRNEHLLKVF 65 (212)
Q Consensus 13 ~l~~~L~~kr~LlvlDdv~~~---~~~~~l~~~~~~~~~gs~iivTtR~~~~~~~~ 65 (212)
.+...|..+.-+++||..-.. .....+...+.....+..||++|.+......+
T Consensus 177 ~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~i~~~ 232 (271)
T PRK14238 177 CIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHNMQQAARI 232 (271)
T ss_pred HHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHcCCEEEEEEcCHHHHHHh
Confidence 344455556678999988532 22222222221112245688888887765543
No 281
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=22.70 E-value=2e+02 Score=21.53 Aligned_cols=54 Identities=15% Similarity=0.116 Sum_probs=30.8
Q ss_pred HHHHHhccCeEEEEecCCCCh---hhHhhhhcccCC-CCCCcEEEEEcCChhHHhhcC
Q 047158 13 MMSSRLLHRRVFVVLDNLDHI---DQLKPLAGENKW-FGSGSRIIITNRNEHLLKVFE 66 (212)
Q Consensus 13 ~l~~~L~~kr~LlvlDdv~~~---~~~~~l~~~~~~-~~~gs~iivTtR~~~~~~~~~ 66 (212)
.+...+..+.-++++|..... ...+.+...+.. ...|..||++|.+......++
T Consensus 139 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~ 196 (204)
T PRK13538 139 ALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVASDK 196 (204)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhhccCC
Confidence 455556667788999998632 222222222221 123556888998877665543
No 282
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=22.69 E-value=1.8e+02 Score=22.27 Aligned_cols=60 Identities=13% Similarity=0.213 Sum_probs=32.3
Q ss_pred HHHHHhccCeEEEEecCCCCh---hhHhhhhcccCCC-CCCcEEEEEcCChhHHhhcCCCceEeC
Q 047158 13 MMSSRLLHRRVFVVLDNLDHI---DQLKPLAGENKWF-GSGSRIIITNRNEHLLKVFEVDGVCTV 73 (212)
Q Consensus 13 ~l~~~L~~kr~LlvlDdv~~~---~~~~~l~~~~~~~-~~gs~iivTtR~~~~~~~~~~~~~~~l 73 (212)
.+...+..+.-++++|..-.. .....+...+... ..|..||++|.+......+ +.+++.+
T Consensus 153 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~-~d~i~~l 216 (236)
T cd03219 153 EIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSL-ADRVTVL 216 (236)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHh-CCEEEEE
Confidence 445555567778999998532 2222222222111 1355688888887766553 2344443
No 283
>PF07848 PaaX: PaaX-like protein; InterPro: IPR012906 This entry describes the N-terminal region of proteins that are similar to, and nclude, the product of the paaX gene of Escherichia coli (P76086 from SWISSPROT). PaaX is a transcriptional regulator that is always found in association with operons believed to be involved in the degradation of phenylacetic acid []. The gene product has been shown to bind to the promoter sites and repress their transcription []. ; PDB: 3KFW_X 3L09_B.
Probab=22.59 E-value=1.8e+02 Score=18.03 Aligned_cols=37 Identities=16% Similarity=0.251 Sum_probs=29.5
Q ss_pred CCHHHHHHhhhhcCCcc---hhhHHHHhhccCceecCCCc
Q 047158 157 MDKDYVLKILQGCGFSS---EIVFFVLTQRCLIVIDEDNR 193 (212)
Q Consensus 157 ~~~~~l~~~~~~~~~~~---~~~l~~L~~~sll~~~~~~~ 193 (212)
++...++.+...-|..+ ..++..|+.+++++....|+
T Consensus 21 i~~~~Li~ll~~~Gv~e~avR~alsRl~~~G~L~~~r~Gr 60 (70)
T PF07848_consen 21 IWVASLIRLLAAFGVSESAVRTALSRLVRRGWLESERRGR 60 (70)
T ss_dssp EEHHHHHHHHCCTT--HHHHHHHHHHHHHTTSEEEECCCT
T ss_pred eeHHHHHHHHHHcCCChHHHHHHHHHHHHcCceeeeecCc
Confidence 88889999888877654 34699999999999988776
No 284
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=22.58 E-value=1.5e+02 Score=22.23 Aligned_cols=53 Identities=8% Similarity=0.025 Sum_probs=30.8
Q ss_pred HHHHHhccCeEEEEecCCCC---hhhHhhhhcccCCC--CCCcEEEEEcCChhHHhhc
Q 047158 13 MMSSRLLHRRVFVVLDNLDH---IDQLKPLAGENKWF--GSGSRIIITNRNEHLLKVF 65 (212)
Q Consensus 13 ~l~~~L~~kr~LlvlDdv~~---~~~~~~l~~~~~~~--~~gs~iivTtR~~~~~~~~ 65 (212)
.+...+..+.-+++||..-. ....+.+...+... ..|..||++|.+......+
T Consensus 138 ~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~ 195 (211)
T cd03298 138 ALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRL 195 (211)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhh
Confidence 44555556778899999853 22233333322211 2356788899887766543
No 285
>TIGR02010 IscR iron-sulfur cluster assembly transcription factor IscR. This model describes IscR, an iron-sulfur binding transcription factor of the ISC iron-sulfur cluster assembly system.
Probab=22.37 E-value=1.3e+02 Score=21.05 Aligned_cols=44 Identities=14% Similarity=-0.031 Sum_probs=25.5
Q ss_pred hHHhhhhccCCC--CCHHHHHHhhhhcCCcchhhHHHHhhccCcee
Q 047158 145 NVFMDIAHLFVG--MDKDYVLKILQGCGFSSEIVFFVLTQRCLIVI 188 (212)
Q Consensus 145 ~~~~~la~f~~~--~~~~~l~~~~~~~~~~~~~~l~~L~~~sll~~ 188 (212)
+++.++|..+.+ ++.+.+.....-..-..+..+..|.+.++|..
T Consensus 12 ~~l~~La~~~~~~~~s~~~ia~~~~ip~~~l~kil~~L~~~glv~s 57 (135)
T TIGR02010 12 TAMLDLALNAETGPVTLADISERQGISLSYLEQLFAKLRKAGLVKS 57 (135)
T ss_pred HHHHHHHhCCCCCcCcHHHHHHHHCcCHHHHHHHHHHHHHCCceEE
Confidence 455666654432 56666555444333334456778888888875
No 286
>TIGR01714 phage_rep_org_N phage replisome organizer, putative, N-terminal region. This model represents the N-terminal domain of a small family of phage proteins. The protein contains a region of low-complexity sequence that reflects DNA direct repeats able to function as an origin of phage replication. The region covered by this model is N-terminal to the low-complexity region.
Probab=22.35 E-value=1.3e+02 Score=20.95 Aligned_cols=43 Identities=9% Similarity=0.103 Sum_probs=32.0
Q ss_pred CCHHHHHHhhhhcCCcchhhHHHHhhccCceecCCCcEEecHH
Q 047158 157 MDKDYVLKILQGCGFSSEIVFFVLTQRCLIVIDEDNRLKMHDL 199 (212)
Q Consensus 157 ~~~~~l~~~~~~~~~~~~~~l~~L~~~sll~~~~~~~~~mH~l 199 (212)
.+.+.++......-...+.++..|.+.+||+..++|.|.|-..
T Consensus 52 y~~e~LA~~~~~~~~~V~~Al~~f~k~glIe~~d~g~i~i~~~ 94 (119)
T TIGR01714 52 YNAEMLATMFNRNVGDIRITLQTLESLGLIEKKNNGDIFLENW 94 (119)
T ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEecCCcEEehhH
Confidence 5666666665554445667899999999999998788777653
No 287
>COG0566 SpoU rRNA methylases [Translation, ribosomal structure and biogenesis]
Probab=22.30 E-value=67 Score=25.66 Aligned_cols=38 Identities=21% Similarity=0.424 Sum_probs=26.6
Q ss_pred cCeEEEEecCCCChhhHhhhhcccCCCCCCcEEEEEcCC
Q 047158 20 HRRVFVVLDNLDHIDQLKPLAGENKWFGSGSRIIITNRN 58 (212)
Q Consensus 20 ~kr~LlvlDdv~~~~~~~~l~~~~~~~~~gs~iivTtR~ 58 (212)
.+.++++||+|.++..+..+...-...|-+. ||++-+.
T Consensus 107 ~~~l~lvLd~V~DP~NlGaIiRtA~a~Gv~~-Vi~~~~~ 144 (260)
T COG0566 107 AQPLLLVLDGVTDPHNLGAIIRTADAFGVDG-VILPKRR 144 (260)
T ss_pred cCCEEEEEecCcCCcchhhHHhhHHHhCCCE-EEECCCc
Confidence 6689999999999999888775444334333 5555543
No 288
>COG5635 Predicted NTPase (NACHT family) [Signal transduction mechanisms]
Probab=22.27 E-value=60 Score=30.61 Aligned_cols=43 Identities=19% Similarity=0.451 Sum_probs=31.0
Q ss_pred HHHhccCeEEEEecCCCChh---------hHhhhhcccCCCCCCcEEEEEcCChhH
Q 047158 15 SSRLLHRRVFVVLDNLDHID---------QLKPLAGENKWFGSGSRIIITNRNEHL 61 (212)
Q Consensus 15 ~~~L~~kr~LlvlDdv~~~~---------~~~~l~~~~~~~~~gs~iivTtR~~~~ 61 (212)
.++++..++|+.+|.++... .+..+.+.+ +.++||+|+|....
T Consensus 299 ~e~l~~g~~llLlDGlDe~~~~~~~~~~~~i~~f~~~~----~~~~~iltcR~~~~ 350 (824)
T COG5635 299 QELLKTGKLLLLLDGLDELEPKNQRALIREINKFLQEY----PDAQVLLTCRPDTY 350 (824)
T ss_pred HHHHhccchhhHhhccchhhhhhHHHHHHHHHHHhhhc----cCCeEEEEeccchh
Confidence 57889999999999998643 234444433 47889999975544
No 289
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=22.19 E-value=2.1e+02 Score=22.75 Aligned_cols=50 Identities=12% Similarity=0.124 Sum_probs=28.9
Q ss_pred HHHHHhccCeEEEEecCCCCh---h---hHhhhhcccCCCCCCcEEEEEcCChhHHhhc
Q 047158 13 MMSSRLLHRRVFVVLDNLDHI---D---QLKPLAGENKWFGSGSRIIITNRNEHLLKVF 65 (212)
Q Consensus 13 ~l~~~L~~kr~LlvlDdv~~~---~---~~~~l~~~~~~~~~gs~iivTtR~~~~~~~~ 65 (212)
.+...+..+.-+++||+.-.. . .+..++..+. .+..||++|.+......+
T Consensus 173 ~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~---~~~tiiivsH~~~~~~~~ 228 (276)
T PRK14271 173 CLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLA---DRLTVIIVTHNLAQAARI 228 (276)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHh---cCCEEEEEeCCHHHHHHh
Confidence 445555566679999998532 2 2222332222 235688888887765543
No 290
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=22.13 E-value=1.5e+02 Score=22.36 Aligned_cols=54 Identities=13% Similarity=0.040 Sum_probs=31.1
Q ss_pred HHHHHHhccCeEEEEecCCCC---hhhHhhhhcccCCC--CCCcEEEEEcCChhHHhhc
Q 047158 12 NMMSSRLLHRRVFVVLDNLDH---IDQLKPLAGENKWF--GSGSRIIITNRNEHLLKVF 65 (212)
Q Consensus 12 ~~l~~~L~~kr~LlvlDdv~~---~~~~~~l~~~~~~~--~~gs~iivTtR~~~~~~~~ 65 (212)
-.+...+..+.-+++||..-. ....+.+...+... ..|..||++|.+......+
T Consensus 140 v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~ 198 (214)
T cd03297 140 VALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYL 198 (214)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHHh
Confidence 355666667788999999853 22222222222211 1256789999887765443
No 291
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=22.10 E-value=1.9e+02 Score=22.59 Aligned_cols=51 Identities=14% Similarity=0.258 Sum_probs=30.9
Q ss_pred HHHHHhccCeEEEEecCCCC---hh---hHhhhhcccCCCCCCcEEEEEcCChhHHhhc
Q 047158 13 MMSSRLLHRRVFVVLDNLDH---ID---QLKPLAGENKWFGSGSRIIITNRNEHLLKVF 65 (212)
Q Consensus 13 ~l~~~L~~kr~LlvlDdv~~---~~---~~~~l~~~~~~~~~gs~iivTtR~~~~~~~~ 65 (212)
.+...+..+.=+++||..-. .. .+..++..+. ..|..||++|.+......+
T Consensus 147 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~--~~~~tiii~sH~~~~~~~~ 203 (256)
T TIGR03873 147 HVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELA--ATGVTVVAALHDLNLAASY 203 (256)
T ss_pred HHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHH--hcCCEEEEEeCCHHHHHHh
Confidence 45556666778999998853 22 2223332222 1356799999888776543
No 292
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=22.09 E-value=3.1e+02 Score=19.77 Aligned_cols=60 Identities=27% Similarity=0.271 Sum_probs=32.7
Q ss_pred HHHHHHHHhccCeEEEEecCCCC---hhhHhhhhcccCCCCCCcEEEEEcCChhHHhhcCCCceEeC
Q 047158 10 GLNMMSSRLLHRRVFVVLDNLDH---IDQLKPLAGENKWFGSGSRIIITNRNEHLLKVFEVDGVCTV 73 (212)
Q Consensus 10 ~~~~l~~~L~~kr~LlvlDdv~~---~~~~~~l~~~~~~~~~gs~iivTtR~~~~~~~~~~~~~~~l 73 (212)
..-.+...+..+.=++++|.--. ....+.+...+... +..||++|.+..... . +.+++.+
T Consensus 98 ~rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~-~-~d~i~~l 160 (166)
T cd03223 98 QRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWK-F-HDRVLDL 160 (166)
T ss_pred HHHHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHh-h-CCEEEEE
Confidence 33455666667777888998753 22222222222222 356888888776543 2 3444444
No 293
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=21.91 E-value=84 Score=24.33 Aligned_cols=20 Identities=15% Similarity=0.403 Sum_probs=15.2
Q ss_pred HHHHHHHhccCeEEEEecCCCC
Q 047158 11 LNMMSSRLLHRRVFVVLDNLDH 32 (212)
Q Consensus 11 ~~~l~~~L~~kr~LlvlDdv~~ 32 (212)
.+.++. +++++|+++||+..
T Consensus 97 AEyfrd--~G~dVlli~Dsltr 116 (215)
T PF00006_consen 97 AEYFRD--QGKDVLLIIDSLTR 116 (215)
T ss_dssp HHHHHH--TTSEEEEEEETHHH
T ss_pred hHHHhh--cCCceeehhhhhHH
Confidence 345555 78999999999954
No 294
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=21.89 E-value=1.9e+02 Score=22.23 Aligned_cols=60 Identities=13% Similarity=0.212 Sum_probs=34.3
Q ss_pred HHHHHhccCeEEEEecCCCC---hhhHhhhhcccCCC--CCCcEEEEEcCChhHHhhcCCCceEeCC
Q 047158 13 MMSSRLLHRRVFVVLDNLDH---IDQLKPLAGENKWF--GSGSRIIITNRNEHLLKVFEVDGVCTVP 74 (212)
Q Consensus 13 ~l~~~L~~kr~LlvlDdv~~---~~~~~~l~~~~~~~--~~gs~iivTtR~~~~~~~~~~~~~~~l~ 74 (212)
.+...+..+.-+++||.... ....+.+...+... ..|..||++|.+...... +.+++.+.
T Consensus 142 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~--~d~i~~l~ 206 (236)
T TIGR03864 142 EIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEA--DDRLVVLH 206 (236)
T ss_pred HHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhh--CCEEEEEe
Confidence 45566666778899999853 22222222222211 136678899988876653 45555553
No 295
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=21.78 E-value=2.1e+02 Score=23.34 Aligned_cols=57 Identities=11% Similarity=0.052 Sum_probs=32.9
Q ss_pred cCeEEEEecCCCCh--hhHhhhhcccCCCCCCcEEEEEcCChhH-Hhhc-CCCceEeCCCC
Q 047158 20 HRRVFVVLDNLDHI--DQLKPLAGENKWFGSGSRIIITNRNEHL-LKVF-EVDGVCTVPRL 76 (212)
Q Consensus 20 ~kr~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~iivTtR~~~~-~~~~-~~~~~~~l~~l 76 (212)
+++=.+|+|+++.. +...+++-.+-...+++.+|++|.+... ...+ .-...+.+.++
T Consensus 94 ~~~kv~ii~~ad~mt~~AaNaLLK~LEEPp~~~~fiL~~~~~~~ll~TI~SRcq~~~~~~~ 154 (290)
T PRK05917 94 SPYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKPQRLPPTIRSRSLSIHIPME 154 (290)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhhcCCCCeEEEEEeCChhhCcHHHHhcceEEEccch
Confidence 34457888999854 4566666655555567777777766433 3232 12334555544
No 296
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=21.74 E-value=1.8e+02 Score=21.22 Aligned_cols=60 Identities=12% Similarity=0.102 Sum_probs=33.0
Q ss_pred HHHHHhccCeEEEEecCCCC---hhhHhhhhcccCCC--CCCcEEEEEcCChhHHhhcCCCceEeC
Q 047158 13 MMSSRLLHRRVFVVLDNLDH---IDQLKPLAGENKWF--GSGSRIIITNRNEHLLKVFEVDGVCTV 73 (212)
Q Consensus 13 ~l~~~L~~kr~LlvlDdv~~---~~~~~~l~~~~~~~--~~gs~iivTtR~~~~~~~~~~~~~~~l 73 (212)
.+...+..+.=++++|..-. ......+...+... ..|..||++|.+....... +.+++.+
T Consensus 110 ~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~-~d~i~~l 174 (178)
T cd03229 110 ALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARL-ADRVVVL 174 (178)
T ss_pred HHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh-cCEEEEE
Confidence 45666667778899998753 22222222222111 1256789999887766543 2344443
No 297
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=21.70 E-value=1.7e+02 Score=23.21 Aligned_cols=53 Identities=19% Similarity=0.135 Sum_probs=31.1
Q ss_pred HHHHHhccCeEEEEecCCCC---hhhHhhhhcccCCC-CCCcEEEEEcCChhHHhhc
Q 047158 13 MMSSRLLHRRVFVVLDNLDH---IDQLKPLAGENKWF-GSGSRIIITNRNEHLLKVF 65 (212)
Q Consensus 13 ~l~~~L~~kr~LlvlDdv~~---~~~~~~l~~~~~~~-~~gs~iivTtR~~~~~~~~ 65 (212)
.+...|..+.-+++||..-. ....+.+...+... ..|..||++|.+...+..+
T Consensus 155 ~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~ 211 (280)
T PRK13649 155 AIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANY 211 (280)
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHh
Confidence 45556666788999999863 22222222222211 1366799999888766543
No 298
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=21.67 E-value=1.8e+02 Score=22.49 Aligned_cols=51 Identities=8% Similarity=0.139 Sum_probs=29.6
Q ss_pred HHHHHhccCeEEEEecCCCCh---h---hHhhhhcccCCCCCCcEEEEEcCChhHHhhc
Q 047158 13 MMSSRLLHRRVFVVLDNLDHI---D---QLKPLAGENKWFGSGSRIIITNRNEHLLKVF 65 (212)
Q Consensus 13 ~l~~~L~~kr~LlvlDdv~~~---~---~~~~l~~~~~~~~~gs~iivTtR~~~~~~~~ 65 (212)
.+...|..+.-+++||..-.. . .+..++..+. ..|..||++|.+......+
T Consensus 154 ~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~~~~tvi~~tH~~~~~~~~ 210 (250)
T PRK11264 154 AIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLA--QEKRTMVIVTHEMSFARDV 210 (250)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHH--hcCCEEEEEeCCHHHHHHh
Confidence 445555566779999998532 2 2222222222 1356688899887766543
No 299
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=21.63 E-value=2e+02 Score=22.40 Aligned_cols=49 Identities=16% Similarity=0.162 Sum_probs=27.9
Q ss_pred HHHHHhccCeEEEEecCCCCh---h---hHhhhhcccCCCCCCcEEEEEcCChhHHhh
Q 047158 13 MMSSRLLHRRVFVVLDNLDHI---D---QLKPLAGENKWFGSGSRIIITNRNEHLLKV 64 (212)
Q Consensus 13 ~l~~~L~~kr~LlvlDdv~~~---~---~~~~l~~~~~~~~~gs~iivTtR~~~~~~~ 64 (212)
.+...+..+.-+++||..-.. . .+..++..+. .+..||++|.+......
T Consensus 158 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~---~~~tii~vsH~~~~~~~ 212 (252)
T PRK14255 158 CIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELR---DQYTIILVTHSMHQASR 212 (252)
T ss_pred HHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHH---hCCEEEEEECCHHHHHH
Confidence 445555566779999998532 2 2223332232 13457777777766544
No 300
>PRK06526 transposase; Provisional
Probab=21.56 E-value=54 Score=26.04 Aligned_cols=37 Identities=14% Similarity=0.230 Sum_probs=18.9
Q ss_pred eEEEEecCCCCh----hhHhhhhcccCC-CCCCcEEEEEcCCh
Q 047158 22 RVFVVLDNLDHI----DQLKPLAGENKW-FGSGSRIIITNRNE 59 (212)
Q Consensus 22 r~LlvlDdv~~~----~~~~~l~~~~~~-~~~gs~iivTtR~~ 59 (212)
.-+||+||+... ...+.+...+.. ...++ +|+||..+
T Consensus 160 ~dlLIIDD~g~~~~~~~~~~~L~~li~~r~~~~s-~IitSn~~ 201 (254)
T PRK06526 160 YPLLIVDEVGYIPFEPEAANLFFQLVSSRYERAS-LIVTSNKP 201 (254)
T ss_pred CCEEEEcccccCCCCHHHHHHHHHHHHHHHhcCC-EEEEcCCC
Confidence 458999999632 111222222211 12344 88888644
No 301
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=21.49 E-value=1.6e+02 Score=23.43 Aligned_cols=54 Identities=15% Similarity=0.096 Sum_probs=31.4
Q ss_pred HHHHHHHhccCeEEEEecCCCCh---hhHhhhhcccCCC--CCCcEEEEEcCChhHHhh
Q 047158 11 LNMMSSRLLHRRVFVVLDNLDHI---DQLKPLAGENKWF--GSGSRIIITNRNEHLLKV 64 (212)
Q Consensus 11 ~~~l~~~L~~kr~LlvlDdv~~~---~~~~~l~~~~~~~--~~gs~iivTtR~~~~~~~ 64 (212)
.-.+...|..+.-+++||..... .....+...+... ..|..||++|.+......
T Consensus 145 rl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~ 203 (277)
T PRK13652 145 RVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPE 203 (277)
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHH
Confidence 33566667778889999998632 2222222222211 125668888888776544
No 302
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=21.47 E-value=2.2e+02 Score=21.51 Aligned_cols=51 Identities=14% Similarity=0.208 Sum_probs=29.4
Q ss_pred HHHHHhccCeEEEEecCCCCh---h---hHhhhhcccCCCCCCcEEEEEcCChhHHhhc
Q 047158 13 MMSSRLLHRRVFVVLDNLDHI---D---QLKPLAGENKWFGSGSRIIITNRNEHLLKVF 65 (212)
Q Consensus 13 ~l~~~L~~kr~LlvlDdv~~~---~---~~~~l~~~~~~~~~gs~iivTtR~~~~~~~~ 65 (212)
.+...+..+.=+++||..-.. . .+..++..+. ..|..||++|.+...+..+
T Consensus 146 ~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~--~~~~tii~~tH~~~~~~~~ 202 (218)
T cd03266 146 AIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLR--ALGKCILFSTHIMQEVERL 202 (218)
T ss_pred HHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHH--HCCCEEEEEeCCHHHHHHh
Confidence 445555566678999998532 2 2222222222 1356788888887655543
No 303
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=21.44 E-value=2.5e+02 Score=22.83 Aligned_cols=53 Identities=6% Similarity=0.035 Sum_probs=30.2
Q ss_pred HHHHHhccCeEEEEecCCCCh---hhHhhhhcccCCCCCCcEEEEEcCChhHHhhc
Q 047158 13 MMSSRLLHRRVFVVLDNLDHI---DQLKPLAGENKWFGSGSRIIITNRNEHLLKVF 65 (212)
Q Consensus 13 ~l~~~L~~kr~LlvlDdv~~~---~~~~~l~~~~~~~~~gs~iivTtR~~~~~~~~ 65 (212)
.+...|..+.-+++||..-.. .....+...+.....+..||++|.+...+..+
T Consensus 210 ~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~i~~~ 265 (305)
T PRK14264 210 CIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQQAARI 265 (305)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHh
Confidence 455566667789999998632 22222222222111234588898888776554
No 304
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=21.25 E-value=1.7e+02 Score=22.63 Aligned_cols=53 Identities=11% Similarity=0.047 Sum_probs=30.5
Q ss_pred HHHHHhccCeEEEEecCCCCh---hhHhhhhcccCCC--CCCcEEEEEcCChhHHhhc
Q 047158 13 MMSSRLLHRRVFVVLDNLDHI---DQLKPLAGENKWF--GSGSRIIITNRNEHLLKVF 65 (212)
Q Consensus 13 ~l~~~L~~kr~LlvlDdv~~~---~~~~~l~~~~~~~--~~gs~iivTtR~~~~~~~~ 65 (212)
.+...+..+.-+++||..-.. ...+.+...+... ..|..||++|.+......+
T Consensus 141 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~ 198 (241)
T PRK14250 141 SIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRI 198 (241)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHh
Confidence 455556667789999998632 2222222222211 1256688888887765543
No 305
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=21.11 E-value=1.8e+02 Score=21.97 Aligned_cols=51 Identities=10% Similarity=0.141 Sum_probs=29.5
Q ss_pred HHHHHhccCeEEEEecCCCC---hhh---HhhhhcccCCCCCCcEEEEEcCChhHHhhc
Q 047158 13 MMSSRLLHRRVFVVLDNLDH---IDQ---LKPLAGENKWFGSGSRIIITNRNEHLLKVF 65 (212)
Q Consensus 13 ~l~~~L~~kr~LlvlDdv~~---~~~---~~~l~~~~~~~~~gs~iivTtR~~~~~~~~ 65 (212)
.+...+..+.=++++|..-. ... +..+...+. ..|..||++|.+......+
T Consensus 147 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~--~~~~tiii~sH~~~~~~~~ 203 (214)
T PRK13543 147 ALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHL--RGGGAALVTTHGAYAAPPV 203 (214)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH--hCCCEEEEEecChhhhhhh
Confidence 44555555666889998853 222 222322222 2355689999887766554
No 306
>PRK06921 hypothetical protein; Provisional
Probab=20.95 E-value=56 Score=26.12 Aligned_cols=9 Identities=22% Similarity=0.438 Sum_probs=7.7
Q ss_pred eEEEEecCC
Q 047158 22 RVFVVLDNL 30 (212)
Q Consensus 22 r~LlvlDdv 30 (212)
-=|||+||+
T Consensus 178 ~dlLiIDDl 186 (266)
T PRK06921 178 VEVLFIDDL 186 (266)
T ss_pred CCEEEEecc
Confidence 459999999
No 307
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=20.87 E-value=1.8e+02 Score=22.96 Aligned_cols=54 Identities=13% Similarity=0.093 Sum_probs=31.2
Q ss_pred HHHHHHhccCeEEEEecCCCCh---hhHhhhhcccCCC--CCCcEEEEEcCChhHHhhc
Q 047158 12 NMMSSRLLHRRVFVVLDNLDHI---DQLKPLAGENKWF--GSGSRIIITNRNEHLLKVF 65 (212)
Q Consensus 12 ~~l~~~L~~kr~LlvlDdv~~~---~~~~~l~~~~~~~--~~gs~iivTtR~~~~~~~~ 65 (212)
-.+...|..+.-+++||..-.. ...+.+...+... ..|..||++|.+......+
T Consensus 160 l~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~ 218 (268)
T PRK10419 160 VCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERF 218 (268)
T ss_pred HHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHh
Confidence 3566666677889999998632 2122222222111 1256788888887766543
No 308
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=20.66 E-value=1.9e+02 Score=22.11 Aligned_cols=59 Identities=10% Similarity=0.141 Sum_probs=34.1
Q ss_pred HHHHHhccCeEEEEecCCCC---hhhHhhhhcccCCC--CCCcEEEEEcCChhHHhhcCCCceEeC
Q 047158 13 MMSSRLLHRRVFVVLDNLDH---IDQLKPLAGENKWF--GSGSRIIITNRNEHLLKVFEVDGVCTV 73 (212)
Q Consensus 13 ~l~~~L~~kr~LlvlDdv~~---~~~~~~l~~~~~~~--~~gs~iivTtR~~~~~~~~~~~~~~~l 73 (212)
.+...|..+.-+++||..-. ....+.+...+... ..|..||++|.+...... +..++.+
T Consensus 147 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~~--~d~i~~l 210 (225)
T PRK10247 147 SLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEINH--ADKVITL 210 (225)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHHh--CCEEEEE
Confidence 45566666778889998853 22223332222211 125678999988877653 4555555
No 309
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=20.65 E-value=1.7e+02 Score=22.80 Aligned_cols=52 Identities=6% Similarity=0.152 Sum_probs=29.5
Q ss_pred HHHHHhccCeEEEEecCCCCh---hhHhhhhcccCCC--CCCcEEEEEcCChhHHhh
Q 047158 13 MMSSRLLHRRVFVVLDNLDHI---DQLKPLAGENKWF--GSGSRIIITNRNEHLLKV 64 (212)
Q Consensus 13 ~l~~~L~~kr~LlvlDdv~~~---~~~~~l~~~~~~~--~~gs~iivTtR~~~~~~~ 64 (212)
.+...|..+.-+++||..... .....+...+... ..|..||++|.+......
T Consensus 156 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~ 212 (252)
T TIGR03005 156 AIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFARE 212 (252)
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHH
Confidence 455556667778999998632 2222222222211 125678888888776544
No 310
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=20.62 E-value=1.3e+02 Score=28.61 Aligned_cols=44 Identities=16% Similarity=0.126 Sum_probs=25.4
Q ss_pred HHHhcc-CeEEEEecCCCC--hhhHhhhhcccCCCC-----------CCcEEEEEcCC
Q 047158 15 SSRLLH-RRVFVVLDNLDH--IDQLKPLAGENKWFG-----------SGSRIIITNRN 58 (212)
Q Consensus 15 ~~~L~~-kr~LlvlDdv~~--~~~~~~l~~~~~~~~-----------~gs~iivTtR~ 58 (212)
.+.++. ...+|+||++.. .+.++.|...+..+. ..+-||+||..
T Consensus 661 ~~~v~~~p~svvllDEieka~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~TSNl 718 (852)
T TIGR03345 661 TEAVRRKPYSVVLLDEVEKAHPDVLELFYQVFDKGVMEDGEGREIDFKNTVILLTSNA 718 (852)
T ss_pred HHHHHhCCCcEEEEechhhcCHHHHHHHHHHhhcceeecCCCcEEeccccEEEEeCCC
Confidence 344443 457999999974 344555554443321 35667777753
No 311
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=20.62 E-value=2.4e+02 Score=21.44 Aligned_cols=52 Identities=12% Similarity=0.052 Sum_probs=28.6
Q ss_pred HHHHHhccCeEEEEecCCCCh---hhHhhhhcccCCCCCCcEEEEEcCChhHHhh
Q 047158 13 MMSSRLLHRRVFVVLDNLDHI---DQLKPLAGENKWFGSGSRIIITNRNEHLLKV 64 (212)
Q Consensus 13 ~l~~~L~~kr~LlvlDdv~~~---~~~~~l~~~~~~~~~gs~iivTtR~~~~~~~ 64 (212)
.+...+..+.=++++|..-.. ..-..+...+........||++|.+...+..
T Consensus 151 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~ 205 (227)
T cd03260 151 CLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAAR 205 (227)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEeccHHHHHH
Confidence 455566667788999988532 2222222222211112568888888776554
No 312
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=20.60 E-value=1.8e+02 Score=22.94 Aligned_cols=53 Identities=8% Similarity=0.054 Sum_probs=30.6
Q ss_pred HHHHHHhccCeEEEEecCCCCh---hhHhhhhcccCCC--CCCcEEEEEcCChhHHhh
Q 047158 12 NMMSSRLLHRRVFVVLDNLDHI---DQLKPLAGENKWF--GSGSRIIITNRNEHLLKV 64 (212)
Q Consensus 12 ~~l~~~L~~kr~LlvlDdv~~~---~~~~~l~~~~~~~--~~gs~iivTtR~~~~~~~ 64 (212)
-.+...+..+.-+++||..... ...+.+...+... ..|..||++|.+......
T Consensus 156 v~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~ 213 (265)
T PRK10575 156 AWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAAR 213 (265)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 3555666678889999998532 2222222222111 125678899888776554
No 313
>PRK03573 transcriptional regulator SlyA; Provisional
Probab=20.57 E-value=2.4e+02 Score=19.73 Aligned_cols=45 Identities=16% Similarity=-0.024 Sum_probs=29.9
Q ss_pred HHhhhhccCCCCCHHHHHHhhhhcCCcchhhHHHHhhccCceecC
Q 047158 146 VFMDIAHLFVGMDKDYVLKILQGCGFSSEIVFFVLTQRCLIVIDE 190 (212)
Q Consensus 146 ~~~~la~f~~~~~~~~l~~~~~~~~~~~~~~l~~L~~~sll~~~~ 190 (212)
.+..+.-.+++.+...+........-.....++.|.++|+|+...
T Consensus 36 vL~~l~~~~~~~t~~eLa~~l~~~~~tvt~~v~~Le~~GlV~r~~ 80 (144)
T PRK03573 36 TLHNIHQLPPEQSQIQLAKAIGIEQPSLVRTLDQLEEKGLISRQT 80 (144)
T ss_pred HHHHHHHcCCCCCHHHHHHHhCCChhhHHHHHHHHHHCCCEeeec
Confidence 344444444556666766666555445556799999999999754
No 314
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=20.50 E-value=1.9e+02 Score=22.53 Aligned_cols=52 Identities=12% Similarity=0.185 Sum_probs=31.0
Q ss_pred HHHHHhccCeEEEEecCCCCh---h---hHhhhhcccCCCCCCcEEEEEcCChhHHhhc
Q 047158 13 MMSSRLLHRRVFVVLDNLDHI---D---QLKPLAGENKWFGSGSRIIITNRNEHLLKVF 65 (212)
Q Consensus 13 ~l~~~L~~kr~LlvlDdv~~~---~---~~~~l~~~~~~~~~gs~iivTtR~~~~~~~~ 65 (212)
.+...+..+.-+++||..-.. . .+..++..+.. ..|..||++|.+...+..+
T Consensus 163 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~-~~~~tii~~sH~~~~~~~~ 220 (255)
T PRK11300 163 EIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRN-EHNVTVLLIEHDMKLVMGI 220 (255)
T ss_pred HHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHh-hcCCEEEEEeCCHHHHHHh
Confidence 455566667889999998532 2 22222222211 1256799999888776554
No 315
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=20.34 E-value=3.2e+02 Score=19.21 Aligned_cols=51 Identities=16% Similarity=0.331 Sum_probs=29.5
Q ss_pred HHHHHhccCeEEEEecCCCC---hhhHhhhhcccCCCCCCcEEEEEcCChhHHhhc
Q 047158 13 MMSSRLLHRRVFVVLDNLDH---IDQLKPLAGENKWFGSGSRIIITNRNEHLLKVF 65 (212)
Q Consensus 13 ~l~~~L~~kr~LlvlDdv~~---~~~~~~l~~~~~~~~~gs~iivTtR~~~~~~~~ 65 (212)
.+...+..+.-++++|+... ......+...+... +..||++|.+.......
T Consensus 80 ~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~~~ 133 (144)
T cd03221 80 ALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLDQV 133 (144)
T ss_pred HHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHHh
Confidence 45566666777889998853 22233333222222 24688888877665543
No 316
>cd07377 WHTH_GntR Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators. This CD represents the winged HTH DNA-binding domain of the GntR (named after the gluconate operon repressor in Bacillus subtilis) family of bacterial transcriptional regulators and their putative homologs found in eukaryota and archaea. The GntR family has over 6000 members distributed among almost all bacterial species, which is comprised of FadR, HutC, MocR, YtrA, AraR, PlmA, and other subfamilies for the regulation of the most varied biological process. The monomeric proteins of the GntR family are characterized by two function domains: a small highly conserved winged helix-turn-helix prokaryotic DNA binding domain in the N-terminus, and a very diverse regulatory ligand-binding domain in the C-terminus for effector-binding/oligomerization, which provides the basis for the subfamily classifications. Binding of the effector to GntR-like transcriptional regulators is
Probab=20.32 E-value=1.3e+02 Score=17.43 Aligned_cols=36 Identities=8% Similarity=-0.078 Sum_probs=23.6
Q ss_pred HHHHHHhhhhcCCcchhhHHHHhhccCceecCCCcE
Q 047158 159 KDYVLKILQGCGFSSEIVFFVLTQRCLIVIDEDNRL 194 (212)
Q Consensus 159 ~~~l~~~~~~~~~~~~~~l~~L~~~sll~~~~~~~~ 194 (212)
...+........-.....+..|.+.++|....+..+
T Consensus 28 ~~~la~~~~is~~~v~~~l~~L~~~G~i~~~~~~~~ 63 (66)
T cd07377 28 ERELAEELGVSRTTVREALRELEAEGLVERRPGRGT 63 (66)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHCCCEEecCCCeE
Confidence 666666554444444567999999999986643333
No 317
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=20.30 E-value=1.8e+02 Score=22.75 Aligned_cols=53 Identities=11% Similarity=0.117 Sum_probs=31.2
Q ss_pred HHHHHhccCeEEEEecCCCCh---hhHhhhhcccCC--CCCCcEEEEEcCChhHHhhc
Q 047158 13 MMSSRLLHRRVFVVLDNLDHI---DQLKPLAGENKW--FGSGSRIIITNRNEHLLKVF 65 (212)
Q Consensus 13 ~l~~~L~~kr~LlvlDdv~~~---~~~~~l~~~~~~--~~~gs~iivTtR~~~~~~~~ 65 (212)
.+...+..+.-+++||..... ...+.+...+.. ...|..||++|.+...+...
T Consensus 161 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~ 218 (258)
T PRK11701 161 QIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLL 218 (258)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHh
Confidence 455566677889999998632 222222222211 11256788899888777643
No 318
>TIGR02147 Fsuc_second hypothetical protein, TIGR02147. This family consists of the 40 members of a paralogous protein family in the rumen anaerobe Fibrobacter succinogenes S85. Member proteins are about 270 residues long and appear to lack signal sequences and transmembrane helices. The only perfectly conserved residue is a glycine in an otherwise poorly conserved region, suggesting members are not enzymes. The family is not characterized.
Probab=20.13 E-value=2.4e+02 Score=22.75 Aligned_cols=38 Identities=18% Similarity=0.025 Sum_probs=25.0
Q ss_pred CCHHHHHHhhhh--cCCcchhhHHHHhhccCceecCCCcE
Q 047158 157 MDKDYVLKILQG--CGFSSEIVFFVLTQRCLIVIDEDNRL 194 (212)
Q Consensus 157 ~~~~~l~~~~~~--~~~~~~~~l~~L~~~sll~~~~~~~~ 194 (212)
.+...+...... ........++.|.+.+||+..++|.|
T Consensus 138 ~~~~~ia~~l~p~is~~ev~~sL~~L~~~glikk~~~g~y 177 (271)
T TIGR02147 138 DDPEELAKRCFPKISAEQVKESLDLLERLGLIKKNEDGFY 177 (271)
T ss_pred CCHHHHHHHhCCCCCHHHHHHHHHHHHHCCCeeECCCCcE
Confidence 456655555432 12224567999999999998877753
No 319
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=20.10 E-value=3.2e+02 Score=20.77 Aligned_cols=46 Identities=9% Similarity=0.094 Sum_probs=29.2
Q ss_pred ccCeEEEEecCCCC---hhh----HhhhhcccCCCCCCcEEEEEcCChhHHhhcC
Q 047158 19 LHRRVFVVLDNLDH---IDQ----LKPLAGENKWFGSGSRIIITNRNEHLLKVFE 66 (212)
Q Consensus 19 ~~kr~LlvlDdv~~---~~~----~~~l~~~~~~~~~gs~iivTtR~~~~~~~~~ 66 (212)
..++-|+++|.... ..+ ...+...+.. .|+.+|++|.+...+....
T Consensus 106 ~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~--~~~~~i~~TH~~~l~~~~~ 158 (204)
T cd03282 106 ADGDSLVLIDELGRGTSSADGFAISLAILECLIK--KESTVFFATHFRDIAAILG 158 (204)
T ss_pred cCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHh--cCCEEEEECChHHHHHHhh
Confidence 35688999999832 222 1222333322 3778999999988877654
No 320
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=20.03 E-value=1.6e+02 Score=21.19 Aligned_cols=51 Identities=20% Similarity=0.248 Sum_probs=29.2
Q ss_pred CeEEEEecCCCCh---hhHhhhhcccCCC-CCCcEEEEEcCChhHHhhcCCCceEeC
Q 047158 21 RRVFVVLDNLDHI---DQLKPLAGENKWF-GSGSRIIITNRNEHLLKVFEVDGVCTV 73 (212)
Q Consensus 21 kr~LlvlDdv~~~---~~~~~l~~~~~~~-~~gs~iivTtR~~~~~~~~~~~~~~~l 73 (212)
++-++++|..... ..-..+...+... ..|+.+|++|.+....... ...+.+
T Consensus 99 ~~~llllDEp~~gld~~~~~~l~~~l~~~~~~~~~vii~TH~~~~~~~~--d~~~~l 153 (162)
T cd03227 99 PRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITHLPELAELA--DKLIHI 153 (162)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhh--hhEEEE
Confidence 6789999998632 2222222211111 1267899999988876643 344444
Done!