Query 047158
Match_columns 212
No_of_seqs 203 out of 1291
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 14:17:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047158.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047158hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 2.1E-34 7.3E-39 250.2 8.6 194 7-210 228-470 (549)
2 3sfz_A APAF-1, apoptotic pepti 100.0 2.5E-31 8.4E-36 248.3 15.3 196 5-211 218-452 (1249)
3 1vt4_I APAF-1 related killer D 99.9 6.2E-28 2.1E-32 217.5 11.5 182 6-204 226-436 (1221)
4 1z6t_A APAF-1, apoptotic prote 99.9 2.5E-27 8.4E-32 207.2 13.9 191 5-207 218-448 (591)
5 2qen_A Walker-type ATPase; unk 98.9 5.5E-09 1.9E-13 84.7 10.0 194 6-205 112-349 (350)
6 2fna_A Conserved hypothetical 98.9 5.6E-09 1.9E-13 84.8 8.0 174 21-204 137-356 (357)
7 1w5s_A Origin recognition comp 98.5 1.7E-07 6E-12 77.7 7.9 190 7-200 122-387 (412)
8 2qby_B CDC6 homolog 3, cell di 97.7 0.0012 4E-08 54.0 13.8 174 8-189 120-339 (384)
9 1fnn_A CDC6P, cell division co 97.7 0.0003 1E-08 57.5 10.1 200 7-210 109-386 (389)
10 2qby_A CDC6 homolog 1, cell di 97.6 0.00017 5.7E-09 58.8 7.3 187 7-197 112-361 (386)
11 1njg_A DNA polymerase III subu 97.3 0.00074 2.5E-08 50.9 8.0 95 20-116 125-223 (250)
12 2v1u_A Cell division control p 96.9 0.0032 1.1E-07 51.2 8.5 179 7-189 114-351 (387)
13 2chg_A Replication factor C sm 96.6 0.01 3.4E-07 44.0 8.4 94 20-115 101-198 (226)
14 1sxj_B Activator 1 37 kDa subu 96.6 0.0057 1.9E-07 48.5 7.0 96 19-116 105-204 (323)
15 1hqc_A RUVB; extended AAA-ATPa 95.9 0.054 1.9E-06 42.9 9.4 170 21-193 90-302 (324)
16 1iqp_A RFCS; clamp loader, ext 94.7 0.09 3.1E-06 41.5 7.1 95 20-116 109-207 (327)
17 1a5t_A Delta prime, HOLB; zinc 94.4 0.12 4.2E-06 41.4 7.5 90 20-116 107-200 (334)
18 2chq_A Replication factor C sm 94.0 0.24 8.2E-06 38.8 8.3 95 20-116 101-199 (319)
19 1jr3_A DNA polymerase III subu 93.8 0.11 3.7E-06 41.9 6.0 95 20-116 118-216 (373)
20 1d2n_A N-ethylmaleimide-sensit 89.6 1.7 5.9E-05 33.2 8.3 96 13-115 116-231 (272)
21 2qz4_A Paraplegin; AAA+, SPG7, 89.4 3.4 0.00011 31.1 9.7 101 13-114 90-214 (262)
22 3pfi_A Holliday junction ATP-d 89.0 0.6 2E-05 37.1 5.3 178 20-200 105-324 (338)
23 1sxj_E Activator 1 40 kDa subu 88.8 0.46 1.6E-05 37.9 4.5 94 21-116 134-232 (354)
24 1jr3_D DNA polymerase III, del 88.2 2.7 9.1E-05 33.4 8.7 108 7-116 61-180 (343)
25 3bos_A Putative DNA replicatio 86.3 0.38 1.3E-05 35.8 2.5 92 21-114 104-210 (242)
26 3eie_A Vacuolar protein sortin 83.7 9.1 0.00031 30.0 9.7 95 19-115 108-221 (322)
27 3h4m_A Proteasome-activating n 83.7 2.7 9.1E-05 32.3 6.4 75 17-91 106-203 (285)
28 2z4s_A Chromosomal replication 83.2 1.4 4.7E-05 36.7 4.7 91 21-114 194-299 (440)
29 1g5t_A COB(I)alamin adenosyltr 82.1 1.2 3.9E-05 33.0 3.4 52 9-60 107-164 (196)
30 2qp9_X Vacuolar protein sortin 81.0 19 0.00066 28.7 10.8 96 19-116 141-255 (355)
31 1xwi_A SKD1 protein; VPS4B, AA 81.0 16 0.00055 28.7 10.1 96 19-116 103-217 (322)
32 2gno_A DNA polymerase III, gam 80.7 1.3 4.6E-05 34.9 3.6 69 20-89 81-152 (305)
33 1sxj_D Activator 1 41 kDa subu 79.1 5.5 0.00019 31.4 6.9 94 21-116 133-230 (353)
34 3u61_B DNA polymerase accessor 76.9 4.3 0.00015 31.8 5.6 63 21-83 105-172 (324)
35 2zan_A Vacuolar protein sortin 73.7 32 0.0011 28.4 10.3 96 19-116 225-339 (444)
36 3vfd_A Spastin; ATPase, microt 72.6 29 0.001 27.9 9.7 95 19-115 205-319 (389)
37 3pvs_A Replication-associated 69.7 19 0.00065 29.9 8.0 96 19-115 104-209 (447)
38 1sxj_A Activator 1 95 kDa subu 69.7 13 0.00043 31.5 7.0 90 20-114 147-245 (516)
39 3syl_A Protein CBBX; photosynt 67.3 7 0.00024 30.2 4.7 70 21-90 130-218 (309)
40 3i71_A Ethanolamine utilizatio 65.5 9.5 0.00032 22.0 3.6 53 145-198 7-59 (68)
41 3d8b_A Fidgetin-like protein 1 64.3 28 0.00097 27.7 7.8 94 19-114 174-287 (357)
42 1sxj_C Activator 1 40 kDa subu 62.6 21 0.00073 28.0 6.8 92 21-115 110-206 (340)
43 1jbk_A CLPB protein; beta barr 62.2 3.1 0.00011 29.2 1.6 64 20-85 114-194 (195)
44 3mq0_A Transcriptional repress 61.9 19 0.00063 27.8 6.1 55 154-208 43-97 (275)
45 4aby_A DNA repair protein RECN 61.5 24 0.00081 28.6 7.0 55 17-73 309-368 (415)
46 3uk6_A RUVB-like 2; hexameric 59.3 16 0.00054 29.0 5.4 83 23-111 191-292 (368)
47 1l8q_A Chromosomal replication 55.9 16 0.00055 28.5 4.9 69 21-90 98-180 (324)
48 3b9p_A CG5977-PA, isoform A; A 53.4 71 0.0024 24.2 8.6 96 19-116 111-227 (297)
49 2c9o_A RUVB-like 1; hexameric 49.9 33 0.0011 28.3 6.1 88 24-115 298-404 (456)
50 1mkm_A ICLR transcriptional re 49.4 32 0.0011 25.8 5.5 52 156-207 23-74 (249)
51 2o0y_A Transcriptional regulat 42.3 40 0.0014 25.5 5.0 51 156-206 38-88 (260)
52 2v79_A DNA replication protein 41.4 31 0.0011 23.5 3.8 80 127-207 17-110 (135)
53 2heo_A Z-DNA binding protein 1 39.4 20 0.00069 20.9 2.3 52 145-196 14-65 (67)
54 3cf0_A Transitional endoplasmi 38.4 1.3E+02 0.0045 23.0 8.9 99 14-116 101-223 (301)
55 3hu3_A Transitional endoplasmi 38.4 94 0.0032 26.1 7.1 79 12-90 288-386 (489)
56 2jt1_A PEFI protein; solution 37.6 25 0.00086 21.4 2.6 37 156-192 24-60 (77)
57 3k69_A Putative transcription 37.1 65 0.0022 22.5 5.1 46 145-190 16-62 (162)
58 1wgl_A TOLL-interacting protei 36.9 60 0.0021 18.6 4.3 40 148-187 14-53 (59)
59 2izx_A CAMP-dependent protein 36.7 18 0.00063 18.9 1.7 17 196-212 7-23 (41)
60 3r4k_A Transcriptional regulat 35.7 30 0.001 26.3 3.4 52 156-207 21-73 (260)
61 1in4_A RUVB, holliday junction 35.4 44 0.0015 26.2 4.4 130 69-201 173-322 (334)
62 2vn2_A DNAD, chromosome replic 34.4 1E+02 0.0034 20.4 5.7 78 129-206 19-109 (128)
63 3nqo_A MARR-family transcripti 33.4 55 0.0019 23.2 4.4 61 129-190 30-91 (189)
64 2r62_A Cell division protease 32.3 1.1E+02 0.0037 22.7 6.1 71 19-89 101-196 (268)
65 2kyg_A CAMP-dependent protein 28.1 30 0.001 19.1 1.7 17 196-212 15-31 (50)
66 3pqk_A Biofilm growth-associat 28.1 1.1E+02 0.0038 18.9 5.9 62 135-198 17-81 (102)
67 3te6_A Regulatory protein SIR3 27.9 1.1E+02 0.0036 24.2 5.4 70 19-89 130-211 (318)
68 1ye8_A Protein THEP1, hypothet 27.5 1.6E+02 0.0054 20.6 6.1 62 18-81 96-168 (178)
69 1y0n_A Hypothetical UPF0270 pr 26.8 81 0.0028 19.3 3.5 28 6-33 35-62 (78)
70 3jth_A Transcription activator 26.5 1.1E+02 0.0038 18.7 4.5 44 155-198 35-81 (98)
71 3lwf_A LIN1550 protein, putati 25.5 76 0.0026 22.1 3.8 47 144-190 30-78 (159)
72 4aik_A Transcriptional regulat 25.2 67 0.0023 21.8 3.4 52 137-189 28-79 (151)
73 2ce7_A Cell division protein F 24.9 2.1E+02 0.0072 23.9 7.0 79 12-90 99-200 (476)
74 3ec2_A DNA replication protein 24.9 19 0.00064 25.3 0.5 38 21-58 100-142 (180)
75 3auy_A DNA double-strand break 24.2 1E+02 0.0035 24.5 4.9 47 16-62 299-349 (371)
76 3jw4_A Transcriptional regulat 23.6 81 0.0028 20.9 3.6 53 137-190 38-91 (148)
77 1y0u_A Arsenical resistance op 23.0 58 0.002 20.1 2.5 42 155-197 42-83 (96)
78 1on2_A Transcriptional regulat 22.6 1.7E+02 0.0057 19.2 5.1 50 156-205 22-71 (142)
79 3f6o_A Probable transcriptiona 22.3 43 0.0015 21.7 1.9 61 135-197 12-75 (118)
80 2qvo_A Uncharacterized protein 22.1 71 0.0024 19.7 2.8 49 157-205 31-82 (95)
81 2dk8_A DNA-directed RNA polyme 21.8 66 0.0023 19.8 2.5 49 143-191 16-65 (81)
82 3eco_A MEPR; mutlidrug efflux 21.7 59 0.002 21.3 2.5 53 137-190 28-81 (139)
83 3fm5_A Transcriptional regulat 21.6 53 0.0018 21.9 2.3 53 137-190 36-88 (150)
84 2zu0_C Probable ATP-dependent 21.5 1.9E+02 0.0065 21.8 5.7 59 13-73 174-238 (267)
85 3t8r_A Staphylococcus aureus C 21.4 73 0.0025 21.6 3.0 48 143-190 13-62 (143)
86 3dv8_A Transcriptional regulat 20.8 94 0.0032 22.0 3.7 48 156-204 169-218 (220)
87 2xrn_A HTH-type transcriptiona 20.3 86 0.0029 23.3 3.4 49 156-204 21-70 (241)
88 3bro_A Transcriptional regulat 20.3 84 0.0029 20.5 3.1 53 137-190 31-84 (141)
89 3u5c_Z RP45, S31, YS23, 40S ri 20.1 85 0.0029 20.5 2.8 34 157-190 60-93 (108)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=2.1e-34 Score=250.15 Aligned_cols=194 Identities=11% Similarity=0.093 Sum_probs=152.1
Q ss_pred hHHHHHHHHHHhccC-eEEEEecCCCChhhHhhhhcccCCCCCCcEEEEEcCChhHHhhcC-CCceEeCCCCChHHHHHH
Q 047158 7 IDRGLNMMSSRLLHR-RVFVVLDNLDHIDQLKPLAGENKWFGSGSRIIITNRNEHLLKVFE-VDGVCTVPRLCLGKSFQL 84 (212)
Q Consensus 7 ~~~~~~~l~~~L~~k-r~LlvlDdv~~~~~~~~l~~~~~~~~~gs~iivTtR~~~~~~~~~-~~~~~~l~~l~~~~a~~L 84 (212)
.+.+...+++.|+++ ||||||||||+.+++ .+. . .+||+||||||++.++..++ ...+|++++|+.++|++|
T Consensus 228 ~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~~-~----~~gs~ilvTTR~~~v~~~~~~~~~~~~l~~L~~~ea~~L 301 (549)
T 2a5y_B 228 SVVLKRMICNALIDRPNTLFVFDDVVQEETI-RWA-Q----ELRLRCLVTTRDVEISNAASQTCEFIEVTSLEIDECYDF 301 (549)
T ss_dssp HHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-HHH-H----HTTCEEEEEESBGGGGGGCCSCEEEEECCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCcEEEEEECCCCchhh-ccc-c----cCCCEEEEEcCCHHHHHHcCCCCeEEECCCCCHHHHHHH
Confidence 455689999999996 999999999998876 222 1 26999999999999988775 346799999999999999
Q ss_pred HHHhhcCCCCCChhHHHHHHHHHHHhCCCCch-----hhhccC---------------CchhHHHHHHHhhcCCCCchhh
Q 047158 85 FSWHAFRKDKPPQRFMKLSRELLRCAEGLPLE-----EKLKRI---------------PNEEILNKLRVSFDVLNDDEEK 144 (212)
Q Consensus 85 l~~~~~~~~~~~~~~~~~~~~i~~~c~glPLa-----~~l~~~---------------~~~~v~~~l~~s~~~L~~~~~~ 144 (212)
|.+.+++... .+.+.+++.+|+++|+|+||| ..+... +...+..++.+||+.| |+..+
T Consensus 302 f~~~a~~~~~-~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~w~~~~~l~~~l~~~~~~~i~~~l~~Sy~~L-~~~lk 379 (549)
T 2a5y_B 302 LEAYGMPMPV-GEKEEDVLNKTIELSSGNPATLMMFFKSCEPKTFEKMAQLNNKLESRGLVGVECITPYSYKSL-AMALQ 379 (549)
T ss_dssp HHHTSCCCC---CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSSHHHHHHHHHHHHHHCSSTTCCCSSSSSSSH-HHHHH
T ss_pred HHHHhcCCCC-chhHHHHHHHHHHHhCCChHHHHHHHHHhccchHHHHHHhHHHhhcccHHHHHHHHhcccccc-cHHHH
Confidence 9999876543 357788899999999999999 111111 2234556778899999 99999
Q ss_pred hHHh-----------hhhccCCCCCHHHHHHhhhhc--CCcch-----------hhHHHHhhccCceecCC---CcEEec
Q 047158 145 NVFM-----------DIAHLFVGMDKDYVLKILQGC--GFSSE-----------IVFFVLTQRCLIVIDED---NRLKMH 197 (212)
Q Consensus 145 ~~~~-----------~la~f~~~~~~~~l~~~~~~~--~~~~~-----------~~l~~L~~~sll~~~~~---~~~~mH 197 (212)
.||+ +||+||++.+.. +.+|.++ |++.. .++++|+++||++.... ++|+||
T Consensus 380 ~~f~~Ls~~er~l~~~ls~fp~~~~i~--i~~w~a~~~G~i~~~~~~~~~~~~~~~l~~L~~rsLl~~~~~~~~~~~~mH 457 (549)
T 2a5y_B 380 RCVEVLSDEDRSALAFAVVMPPGVDIP--VKLWSCVIPVDICSNEEEQLDDEVADRLKRLSKRGALLSGKRMPVLTFKID 457 (549)
T ss_dssp HHHHTSCHHHHHHTTGGGSSCTTCCEE--HHHHHHHSCC-------CCCTHHHHHHHHHTTTBSSCSEEECSSSCEEECC
T ss_pred HHHhccchhhhhHhhheeeeCCCCeee--eeeeeeeccceeccCCCCCCHHHHHHHHHHHHHcCCeeEecCCCceEEEeC
Confidence 9998 999999874433 6789888 55531 27999999999997643 359999
Q ss_pred HHHHHHHHHHHhc
Q 047158 198 DLIRDMKEKLFAK 210 (212)
Q Consensus 198 ~lv~~~a~~~~~~ 210 (212)
|+||+||++++.+
T Consensus 458 dlv~~~a~~~~~~ 470 (549)
T 2a5y_B 458 HIIHMFLKHVVDA 470 (549)
T ss_dssp HHHHHHHHTTSCT
T ss_pred hHHHHHHHHHHHH
Confidence 9999999977654
No 2
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.97 E-value=2.5e-31 Score=248.28 Aligned_cols=196 Identities=16% Similarity=0.259 Sum_probs=164.2
Q ss_pred cchHHHHHHHHHHhccC--eEEEEecCCCChhhHhhhhcccCCCCCCcEEEEEcCChhHHhh-cCCCceEeCCC-CChHH
Q 047158 5 ESIDRGLNMMSSRLLHR--RVFVVLDNLDHIDQLKPLAGENKWFGSGSRIIITNRNEHLLKV-FEVDGVCTVPR-LCLGK 80 (212)
Q Consensus 5 ~~~~~~~~~l~~~L~~k--r~LlvlDdv~~~~~~~~l~~~~~~~~~gs~iivTtR~~~~~~~-~~~~~~~~l~~-l~~~~ 80 (212)
.+.+++.+.++..+.++ ||||||||||+..+|+.+ ++||+||||||++.++.. .+....+++++ |+.++
T Consensus 218 ~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~-------~~~~~ilvTtR~~~~~~~~~~~~~~~~~~~~l~~~~ 290 (1249)
T 3sfz_A 218 LNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF-------DNQCQILLTTRDKSVTDSVMGPKHVVPVESGLGREK 290 (1249)
T ss_dssp SSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTT-------CSSCEEEEEESSTTTTTTCCSCBCCEECCSSCCHHH
T ss_pred CCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhh-------cCCCEEEEEcCCHHHHHhhcCCceEEEecCCCCHHH
Confidence 35677888899999887 999999999999888765 468999999999998854 44567899996 99999
Q ss_pred HHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCCCch-----h--------------hhccCC-----------chhHHHH
Q 047158 81 SFQLFSWHAFRKDKPPQRFMKLSRELLRCAEGLPLE-----E--------------KLKRIP-----------NEEILNK 130 (212)
Q Consensus 81 a~~Ll~~~~~~~~~~~~~~~~~~~~i~~~c~glPLa-----~--------------~l~~~~-----------~~~v~~~ 130 (212)
|++||...++... +.+.+.+++|+++|+|+||| . .+.... ..++..+
T Consensus 291 a~~l~~~~~~~~~---~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 367 (1249)
T 3sfz_A 291 GLEILSLFVNMKK---EDLPAEAHSIIKECKGSPLVVSLIGALLRDFPNRWAYYLRQLQNKQFKRIRKSSSYDYEALDEA 367 (1249)
T ss_dssp HHHHHHHHHTSCS---TTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSSSCHHHHHHHHHSCCCCCSSCTTCTTHHHHHHH
T ss_pred HHHHHHHhhCCCh---hhCcHHHHHHHHHhCCCHHHHHHHHHHhhcChhHHHHHHHHHhhhhhhhcccccccchHHHHHH
Confidence 9999998884432 23445689999999999999 1 111111 1459999
Q ss_pred HHHhhcCCCCchhhhHHhhhhccCCC--CCHHHHHHhhhhcCCcchhhHHHHhhccCceecCCCc---EEecHHHHHHHH
Q 047158 131 LRVSFDVLNDDEEKNVFMDIAHLFVG--MDKDYVLKILQGCGFSSEIVFFVLTQRCLIVIDEDNR---LKMHDLIRDMKE 205 (212)
Q Consensus 131 l~~s~~~L~~~~~~~~~~~la~f~~~--~~~~~l~~~~~~~~~~~~~~l~~L~~~sll~~~~~~~---~~mH~lv~~~a~ 205 (212)
|.+||+.| +++.|+||++||+||.+ ++.+.++.+|.+++...+.++++|+++||++...++. |+||++||+|++
T Consensus 368 l~~s~~~L-~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~~~~~~~~l~~L~~~sl~~~~~~~~~~~~~~h~l~~~~~~ 446 (1249)
T 3sfz_A 368 MSISVEML-REDIKDYYTDLSILQKDVKVPTKVLCVLWDLETEEVEDILQEFVNKSLLFCNRNGKSFCYYLHDLQVDFLT 446 (1249)
T ss_dssp HHHHHHTS-CTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSCEEEESSSSEEEECCHHHHHHHH
T ss_pred HHHHHHhC-CHHHHHHHHHhCccCCCCeeCHHHHHHHhCCCHHHHHHHHHHHHhccceEEecCCCceEEEecHHHHHHHH
Confidence 99999999 99999999999999986 8999999999988877888999999999999887665 999999999999
Q ss_pred HHHhcC
Q 047158 206 KLFAKN 211 (212)
Q Consensus 206 ~~~~~~ 211 (212)
+.+.++
T Consensus 447 ~~~~~~ 452 (1249)
T 3sfz_A 447 EKNRSQ 452 (1249)
T ss_dssp HHTGGG
T ss_pred hhhhHH
Confidence 987654
No 3
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.95 E-value=6.2e-28 Score=217.47 Aligned_cols=182 Identities=14% Similarity=0.188 Sum_probs=143.2
Q ss_pred chHHHHHHHHHHh---ccCeEEEEecCCCChhhHhhhhcccCCCCCCcEEEEEcCChhHHhhcCCCceEeCC------CC
Q 047158 6 SIDRGLNMMSSRL---LHRRVFVVLDNLDHIDQLKPLAGENKWFGSGSRIIITNRNEHLLKVFEVDGVCTVP------RL 76 (212)
Q Consensus 6 ~~~~~~~~l~~~L---~~kr~LlvlDdv~~~~~~~~l~~~~~~~~~gs~iivTtR~~~~~~~~~~~~~~~l~------~l 76 (212)
+.+.+.+.+++.| .+||+||||||||+.++|+.+. +||+||||||++.++..+.....+.++ +|
T Consensus 226 ~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f~-------pGSRILVTTRd~~Va~~l~g~~vy~LeL~d~dL~L 298 (1221)
T 1vt4_I 226 RIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN-------LSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTL 298 (1221)
T ss_dssp HHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHHH-------SSCCEEEECSCSHHHHHHHHHSSCEEEECSSSSCC
T ss_pred CHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhhC-------CCeEEEEeccChHHHHhcCCCeEEEecCccccCCc
Confidence 3455677788876 6799999999999999998763 589999999999988644333356666 89
Q ss_pred ChHHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCCCch-----hhhc----------cCCchhHHHHHHHhhcCCCCc
Q 047158 77 CLGKSFQLFSWHAFRKDKPPQRFMKLSRELLRCAEGLPLE-----EKLK----------RIPNEEILNKLRVSFDVLNDD 141 (212)
Q Consensus 77 ~~~~a~~Ll~~~~~~~~~~~~~~~~~~~~i~~~c~glPLa-----~~l~----------~~~~~~v~~~l~~s~~~L~~~ 141 (212)
+.+||++||.+.. +.. . ..+..+ .|+|+||| ..+. ......+..+|.+||+.| ++
T Consensus 299 S~eEA~eLF~~~~-g~~--~---eeL~~e---ICgGLPLALkLaGs~Lr~k~~s~eeW~~~~~~~I~aaLelSYd~L-p~ 368 (1221)
T 1vt4_I 299 TPDEVKSLLLKYL-DCR--P---QDLPRE---VLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVL-EP 368 (1221)
T ss_dssp CHHHHHHHHHHHH-CCC--T---TTHHHH---HCCCCHHHHHHHHHHHHHSCSSHHHHHHCSCHHHHHHHHHHHHHS-CT
T ss_pred CHHHHHHHHHHHc-CCC--H---HHHHHH---HhCCCHHHHHHHHHHHhCCCCCHHHHhcCChhHHHHHHHHHHHhC-CH
Confidence 9999999999884 222 1 122333 39999999 2222 223467999999999999 98
Q ss_pred hh-hhHHhhhhccCCC--CCHHHHHHhhhhcCC-cchhhHHHHhhccCceecC-CCcEEecHHHHHHH
Q 047158 142 EE-KNVFMDIAHLFVG--MDKDYVLKILQGCGF-SSEIVFFVLTQRCLIVIDE-DNRLKMHDLIRDMK 204 (212)
Q Consensus 142 ~~-~~~~~~la~f~~~--~~~~~l~~~~~~~~~-~~~~~l~~L~~~sll~~~~-~~~~~mH~lv~~~a 204 (212)
+. |+||++||+||.+ ++.+.++.+|.+++. .++.++++|+++||++... .++|+||+|+++++
T Consensus 369 eelK~cFL~LAIFPed~~I~~elLa~LW~aeGeedAe~~L~eLvdRSLLq~d~~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 369 AEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELK 436 (1221)
T ss_dssp THHHHHHHHTTSSCTTSCEEHHHHHHHHCSSCSHHHHHHHHHHHTSSSSSBCSSSSEEBCCCHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCCHHHHHHHHHHHHhhCCEEEeCCCCEEEehHHHHHHh
Confidence 98 9999999999985 888999999998753 3667899999999999864 46799999999855
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.95 E-value=2.5e-27 Score=207.21 Aligned_cols=191 Identities=18% Similarity=0.259 Sum_probs=153.0
Q ss_pred cchHHHHHHHHHHhcc--CeEEEEecCCCChhhHhhhhcccCCCCCCcEEEEEcCChhHHhhcCCCceEeC---CCCChH
Q 047158 5 ESIDRGLNMMSSRLLH--RRVFVVLDNLDHIDQLKPLAGENKWFGSGSRIIITNRNEHLLKVFEVDGVCTV---PRLCLG 79 (212)
Q Consensus 5 ~~~~~~~~~l~~~L~~--kr~LlvlDdv~~~~~~~~l~~~~~~~~~gs~iivTtR~~~~~~~~~~~~~~~l---~~l~~~ 79 (212)
.+.+.+...+++.+.+ +++||||||+|+...++.+ ++||+||||||++.++..+. ...+++ ++|+.+
T Consensus 218 ~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l-------~~~~~ilvTsR~~~~~~~~~-~~~~~v~~l~~L~~~ 289 (591)
T 1z6t_A 218 LNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAF-------DSQCQILLTTRDKSVTDSVM-GPKYVVPVESSLGKE 289 (591)
T ss_dssp CSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHTT-------CSSCEEEEEESCGGGGTTCC-SCEEEEECCSSCCHH
T ss_pred CCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHHh-------cCCCeEEEECCCcHHHHhcC-CCceEeecCCCCCHH
Confidence 4566778888888887 7899999999998877654 46899999999998876543 334444 589999
Q ss_pred HHHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCCCch-----hhh--------------ccC-----------CchhHHH
Q 047158 80 KSFQLFSWHAFRKDKPPQRFMKLSRELLRCAEGLPLE-----EKL--------------KRI-----------PNEEILN 129 (212)
Q Consensus 80 ~a~~Ll~~~~~~~~~~~~~~~~~~~~i~~~c~glPLa-----~~l--------------~~~-----------~~~~v~~ 129 (212)
++++||...++... ....+.+.+|++.|+|+||| ..+ ... ...++..
T Consensus 290 ea~~L~~~~~~~~~---~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~~~w~~~l~~l~~~~~~~~~~~~~~~~~~l~~ 366 (591)
T 1z6t_A 290 KGLEILSLFVNMKK---ADLPEQAHSIIKECKGSPLVVSLIGALLRDFPNRWEYYLKQLQNKQFKRIRKSSSYDYEALDE 366 (591)
T ss_dssp HHHHHHHHHHTSCG---GGSCTHHHHHHHHHTTCHHHHHHHHHHHHHSTTCHHHHHHHHHSCCCCCSSCCCSSCCHHHHH
T ss_pred HHHHHHHHHhCCCc---ccccHHHHHHHHHhCCCcHHHHHHHHHHhcCchhHHHHHHHHHHhHHHHhhhccccchHHHHH
Confidence 99999998886421 22235688999999999999 111 100 1246899
Q ss_pred HHHHhhcCCCCchhhhHHhhhhccCCC--CCHHHHHHhhhhcCCcchhhHHHHhhccCceecCCC---cEEecHHHHHHH
Q 047158 130 KLRVSFDVLNDDEEKNVFMDIAHLFVG--MDKDYVLKILQGCGFSSEIVFFVLTQRCLIVIDEDN---RLKMHDLIRDMK 204 (212)
Q Consensus 130 ~l~~s~~~L~~~~~~~~~~~la~f~~~--~~~~~l~~~~~~~~~~~~~~l~~L~~~sll~~~~~~---~~~mH~lv~~~a 204 (212)
++.+||+.| ++..|.||+++|+||.+ ++.+.+..+|..+....+.++++|+++||++...++ .|+||+++|+|+
T Consensus 367 ~l~~s~~~L-~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~~~~~~~~l~~L~~~~Ll~~~~~~~~~~~~~H~lv~~~~ 445 (591)
T 1z6t_A 367 AMSISVEML-REDIKDYYTDLSILQKDVKVPTKVLCILWDMETEEVEDILQEFVNKSLLFCDRNGKSFRYYLHDLQVDFL 445 (591)
T ss_dssp HHHHHHHTS-CTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSSEEEEETTEEEEECCHHHHHHH
T ss_pred HHHHHHHhC-CHHHHHHHHHccccCCCCccCHHHHHHHhccCHHHHHHHHHHHHhCcCeEEecCCCccEEEEcHHHHHHH
Confidence 999999999 99999999999999885 888999999987655667789999999999876533 599999999999
Q ss_pred HHH
Q 047158 205 EKL 207 (212)
Q Consensus 205 ~~~ 207 (212)
++.
T Consensus 446 ~~~ 448 (591)
T 1z6t_A 446 TEK 448 (591)
T ss_dssp HHH
T ss_pred Hhh
Confidence 987
No 5
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.92 E-value=5.5e-09 Score=84.75 Aligned_cols=194 Identities=15% Similarity=0.069 Sum_probs=115.4
Q ss_pred chHHHHHHHHHHhcc-CeEEEEecCCCChhh--------HhhhhcccCCCCCCcEEEEEcCChhHHhhc-----------
Q 047158 6 SIDRGLNMMSSRLLH-RRVFVVLDNLDHIDQ--------LKPLAGENKWFGSGSRIIITNRNEHLLKVF----------- 65 (212)
Q Consensus 6 ~~~~~~~~l~~~L~~-kr~LlvlDdv~~~~~--------~~~l~~~~~~~~~gs~iivTtR~~~~~~~~----------- 65 (212)
+.+++.+.+.+.... ++.+||+||++.... +-.++..+....++..+|+|++.......+
T Consensus 112 ~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~il~g~~~~~l~~~l~~~~~~~~l~ 191 (350)
T 2qen_A 112 SLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYAYDSLPNLKIILTGSEVGLLHDFLKITDYESPLY 191 (350)
T ss_dssp CHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHHHHHHCTTEEEEEEESSHHHHHHHHCTTCTTSTTT
T ss_pred hHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHHHHHhcCCeEEEEECCcHHHHHHHHhhcCCCCccc
Confidence 445555666666653 499999999976432 212221111112477899998876532211
Q ss_pred C-CCceEeCCCCChHHHHHHHHHhhcCCC-CCChhHHHHHHHHHHHhCCCCch-----hhhcc-CCch--------hHHH
Q 047158 66 E-VDGVCTVPRLCLGKSFQLFSWHAFRKD-KPPQRFMKLSRELLRCAEGLPLE-----EKLKR-IPNE--------EILN 129 (212)
Q Consensus 66 ~-~~~~~~l~~l~~~~a~~Ll~~~~~~~~-~~~~~~~~~~~~i~~~c~glPLa-----~~l~~-~~~~--------~v~~ 129 (212)
+ ....+.+.+|+.+|+.+++........ ... ...+.++.+.|+|+|++ ..+.. .... .+..
T Consensus 192 ~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~~---~~~~~~i~~~tgG~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (350)
T 2qen_A 192 GRIAGEVLVKPFDKDTSVEFLKRGFREVNLDVP---ENEIEEAVELLDGIPGWLVVFGVEYLRNGDFGRAMKRTLEVAKG 268 (350)
T ss_dssp TCCCEEEECCCCCHHHHHHHHHHHHHTTTCCCC---HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred cCccceeeCCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHhCCCHHHHHHHHHHHhccccHhHHHHHHHHHHHH
Confidence 1 124789999999999999986542211 122 34577899999999998 11111 1111 1111
Q ss_pred HHHHhhcCCC--CchhhhHHhhhhccCCCCCHHHHHHhhhhc--CCc---chhhHHHHhhccCceecCCCcEEe-cHHHH
Q 047158 130 KLRVSFDVLN--DDEEKNVFMDIAHLFVGMDKDYVLKILQGC--GFS---SEIVFFVLTQRCLIVIDEDNRLKM-HDLIR 201 (212)
Q Consensus 130 ~l~~s~~~L~--~~~~~~~~~~la~f~~~~~~~~l~~~~~~~--~~~---~~~~l~~L~~~sll~~~~~~~~~m-H~lv~ 201 (212)
.+.-.+..+. ++..+..+..+|. ...+...+....... +.. ...+++.|.+.+||... ++.|++ |++++
T Consensus 269 ~~~~~l~~l~~~~~~~~~~l~~la~--g~~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~-~~~y~~~~p~~~ 345 (350)
T 2qen_A 269 LIMGELEELRRRSPRYVDILRAIAL--GYNRWSLIRDYLAVKGTKIPEPRLYALLENLKKMNWIVEE-DNTYKIADPVVA 345 (350)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHT--TCCSHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEEEE-TTEEEESSHHHH
T ss_pred HHHHHHHHHHhCChhHHHHHHHHHh--CCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCEEec-CCEEEEecHHHH
Confidence 2222233331 3667778888887 335666665554221 222 24579999999999876 477876 78888
Q ss_pred HHHH
Q 047158 202 DMKE 205 (212)
Q Consensus 202 ~~a~ 205 (212)
.|.+
T Consensus 346 ~~~~ 349 (350)
T 2qen_A 346 TVLR 349 (350)
T ss_dssp HHHT
T ss_pred HHHc
Confidence 8764
No 6
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.86 E-value=5.6e-09 Score=84.85 Aligned_cols=174 Identities=13% Similarity=0.046 Sum_probs=105.2
Q ss_pred CeEEEEecCCCChh-----hHhhhhcccCCCCCCcEEEEEcCChhHHhh----------c-CC-CceEeCCCCChHHHHH
Q 047158 21 RRVFVVLDNLDHID-----QLKPLAGENKWFGSGSRIIITNRNEHLLKV----------F-EV-DGVCTVPRLCLGKSFQ 83 (212)
Q Consensus 21 kr~LlvlDdv~~~~-----~~~~l~~~~~~~~~gs~iivTtR~~~~~~~----------~-~~-~~~~~l~~l~~~~a~~ 83 (212)
++++||+||++..+ ++..++..+....++..+|+|++....... . +. ...+.+.+|+.+++.+
T Consensus 137 ~~~vlvlDe~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~ 216 (357)
T 2fna_A 137 DNVIIVLDEAQELVKLRGVNLLPALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIE 216 (357)
T ss_dssp SCEEEEEETGGGGGGCTTCCCHHHHHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHH
T ss_pred CCeEEEEECHHHhhccCchhHHHHHHHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHH
Confidence 48999999997633 222222222111246789999997653221 1 11 2578999999999999
Q ss_pred HHHHhhcC-CCCCChhHHHHHHHHHHHhCCCCch-----hhhc-cCCc-h-------hHHHHHHHhhc-------CCCCc
Q 047158 84 LFSWHAFR-KDKPPQRFMKLSRELLRCAEGLPLE-----EKLK-RIPN-E-------EILNKLRVSFD-------VLNDD 141 (212)
Q Consensus 84 Ll~~~~~~-~~~~~~~~~~~~~~i~~~c~glPLa-----~~l~-~~~~-~-------~v~~~l~~s~~-------~L~~~ 141 (212)
++...... +.... . ...|.+.|+|.|++ ..+. .... . .+...+.-.+. .+ ++
T Consensus 217 ~l~~~~~~~~~~~~-~----~~~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l-~~ 290 (357)
T 2fna_A 217 FLRRGFQEADIDFK-D----YEVVYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEYAKKLILKEFENFLHGREIA-RK 290 (357)
T ss_dssp HHHHHHHHHTCCCC-C----HHHHHHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHTTCGGG-HH
T ss_pred HHHHHHHHcCCCCC-c----HHHHHHHhCCCHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHhhccccc-cH
Confidence 99875421 11222 1 16889999999998 1111 1110 0 11111221122 57 78
Q ss_pred hhhhHHhhhhccCCCCCHHHHHHhhh-hcC--C---cchhhHHHHhhccCceecCCCcEEe-cHHHHHHH
Q 047158 142 EEKNVFMDIAHLFVGMDKDYVLKILQ-GCG--F---SSEIVFFVLTQRCLIVIDEDNRLKM-HDLIRDMK 204 (212)
Q Consensus 142 ~~~~~~~~la~f~~~~~~~~l~~~~~-~~~--~---~~~~~l~~L~~~sll~~~~~~~~~m-H~lv~~~a 204 (212)
..+..+..+|. .. +...+..... ..+ . ....+++.|.+.+||... ++.|++ |++++++.
T Consensus 291 ~~~~~l~~la~--g~-~~~~l~~~~~~~~g~~~~~~~~~~~L~~L~~~gli~~~-~~~y~f~~~~~~~~l 356 (357)
T 2fna_A 291 RYLNIMRTLSK--CG-KWSDVKRALELEEGIEISDSEIYNYLTQLTKHSWIIKE-GEKYCPSEPLISLAF 356 (357)
T ss_dssp HHHHHHHHHTT--CB-CHHHHHHHHHHHHCSCCCHHHHHHHHHHHHHTTSEEES-SSCEEESSHHHHHHT
T ss_pred HHHHHHHHHHc--CC-CHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEEec-CCEEEecCHHHHHhh
Confidence 88999988888 23 6666554321 122 1 234579999999999876 377884 78998874
No 7
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=98.54 E-value=1.7e-07 Score=77.69 Aligned_cols=190 Identities=12% Similarity=0.090 Sum_probs=108.5
Q ss_pred hHHHHHHHHHHhc--cCeEEEEecCCCChh--------hHhhhhccc---CCCC--CCcEEEEEcCChhHHhhc------
Q 047158 7 IDRGLNMMSSRLL--HRRVFVVLDNLDHID--------QLKPLAGEN---KWFG--SGSRIIITNRNEHLLKVF------ 65 (212)
Q Consensus 7 ~~~~~~~l~~~L~--~kr~LlvlDdv~~~~--------~~~~l~~~~---~~~~--~gs~iivTtR~~~~~~~~------ 65 (212)
.+++.+.+.+.+. +++++||+||++... .+..+...+ +..+ .+..||+||+.......+
T Consensus 122 ~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~ 201 (412)
T 1w5s_A 122 ALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQ 201 (412)
T ss_dssp HHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceEEEEEEeccccHHHHHhhhcch
Confidence 3455666677765 679999999997642 233322222 1112 345588788765532111
Q ss_pred ---CCCceEeCCCCChHHHHHHHHHhh---cCCCCCChhHHHHHHHHHHHhC------CCCch-----h---hh--c---
Q 047158 66 ---EVDGVCTVPRLCLGKSFQLFSWHA---FRKDKPPQRFMKLSRELLRCAE------GLPLE-----E---KL--K--- 120 (212)
Q Consensus 66 ---~~~~~~~l~~l~~~~a~~Ll~~~~---~~~~~~~~~~~~~~~~i~~~c~------glPLa-----~---~l--~--- 120 (212)
.....+.+++++.++.+++|.... +...... .+....+.+.|+ |.|.. . .. .
T Consensus 202 ~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~~~~G~p~~~~~l~~~a~~~a~~~~~ 278 (412)
T 1w5s_A 202 VESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWE---PRHLELISDVYGEDKGGDGSARRAIVALKMACEMAEAMGR 278 (412)
T ss_dssp HHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCC---HHHHHHHHHHHCGGGTSCCCHHHHHHHHHHHHHHHHHTTC
T ss_pred hhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCC---hHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHcCC
Confidence 112339999999999999997553 2221222 345678889999 99964 0 00 0
Q ss_pred -cCCchhHHHH---------HHHhhcCCCCchhhhHHhhhhccC----CCCCHHHHHHhh-----hhcCCc------chh
Q 047158 121 -RIPNEEILNK---------LRVSFDVLNDDEEKNVFMDIAHLF----VGMDKDYVLKIL-----QGCGFS------SEI 175 (212)
Q Consensus 121 -~~~~~~v~~~---------l~~s~~~L~~~~~~~~~~~la~f~----~~~~~~~l~~~~-----~~~~~~------~~~ 175 (212)
......+..+ +.-+++.| |+..+.++..++.+. ..++...+...+ ...+.. ...
T Consensus 279 ~~i~~~~v~~~~~~~~~~~~~~~~l~~l-~~~~~~~l~aia~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (412)
T 1w5s_A 279 DSLSEDLVRKAVSENEAASIQTHELEAL-SIHELIILRLIAEATLGGMEWINAGLLRQRYEDASLTMYNVKPRGYTQYHI 357 (412)
T ss_dssp SSCCHHHHHHHHHHC------CCSSSSS-CHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHHHHHSCCCCCCHHHHHH
T ss_pred CCCCHHHHHHHHHHHhccchHHHHHHcC-CHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHhhcCCCCCCHHHHHH
Confidence 1112223322 33455788 888899888888753 135554433222 112211 235
Q ss_pred hHHHHhhccCceecC-----CCcEEecHHH
Q 047158 176 VFFVLTQRCLIVIDE-----DNRLKMHDLI 200 (212)
Q Consensus 176 ~l~~L~~~sll~~~~-----~~~~~mH~lv 200 (212)
+++.|.+.+||.... .|+|++|.+.
T Consensus 358 ~l~~L~~~gli~~~~~~~~~~g~~~~~~l~ 387 (412)
T 1w5s_A 358 YLKHLTSLGLVDAKPSGRGMRGRTTLFRLA 387 (412)
T ss_dssp HHHHHHHTTSEEEECC-------CCEEEEC
T ss_pred HHHHHHhCCCEEeecccCCCCCceeEEEeC
Confidence 799999999998653 3446565443
No 8
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.67 E-value=0.0012 Score=53.98 Aligned_cols=174 Identities=11% Similarity=0.028 Sum_probs=99.8
Q ss_pred HHHHHHHHHHhccCeEEEEecCCCChhh-------HhhhhcccCCCCCCcEEEEEcCChhHHhhc------CCCceEeCC
Q 047158 8 DRGLNMMSSRLLHRRVFVVLDNLDHIDQ-------LKPLAGENKWFGSGSRIIITNRNEHLLKVF------EVDGVCTVP 74 (212)
Q Consensus 8 ~~~~~~l~~~L~~kr~LlvlDdv~~~~~-------~~~l~~~~~~~~~gs~iivTtR~~~~~~~~------~~~~~~~l~ 74 (212)
.+..+.+.+.+..++.+||+|+++.... +..+... . .+..||+||+.......+ .....+.++
T Consensus 120 ~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~---~-~~~~iI~~t~~~~~~~~l~~~l~sr~~~~i~l~ 195 (384)
T 2qby_B 120 GEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRS---D-ANISVIMISNDINVRDYMEPRVLSSLGPSVIFK 195 (384)
T ss_dssp HHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTS---S-SCEEEEEECSSTTTTTTSCHHHHHTCCCEEEEC
T ss_pred HHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcC---C-cceEEEEEECCCchHhhhCHHHHhcCCCeEEEC
Confidence 4556677777877777999999986432 2233321 1 577899998865321111 112389999
Q ss_pred CCChHHHHHHHHHhhc---CCCCCChhHHHHHHHHHHHhC---CCCch--------hhhc----cCCchhHH--------
Q 047158 75 RLCLGKSFQLFSWHAF---RKDKPPQRFMKLSRELLRCAE---GLPLE--------EKLK----RIPNEEIL-------- 128 (212)
Q Consensus 75 ~l~~~~a~~Ll~~~~~---~~~~~~~~~~~~~~~i~~~c~---glPLa--------~~l~----~~~~~~v~-------- 128 (212)
+++.++..++|...+. ......+ +....+++.++ |.|-. ..+. ......+.
T Consensus 196 ~l~~~~~~~il~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~~~~~i~~~~v~~~~~~~~~ 272 (384)
T 2qby_B 196 PYDAEQLKFILSKYAEYGLIKGTYDD---EILSYIAAISAKEHGDARKAVNLLFRAAQLASGGGIIRKEHVDKAIVDYEQ 272 (384)
T ss_dssp CCCHHHHHHHHHHHHHHTSCTTSCCS---HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTSSSCCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhcccCCcCH---HHHHHHHHHHHhccCCHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHHhc
Confidence 9999999999998752 2222222 33556677776 76653 1111 11222232
Q ss_pred HHHHHhhcCCCCchhhhHHhhhhccCC-CCCHHHHHHhhhhcCCc------chhhHHHHhhccCceec
Q 047158 129 NKLRVSFDVLNDDEEKNVFMDIAHLFV-GMDKDYVLKILQGCGFS------SEIVFFVLTQRCLIVID 189 (212)
Q Consensus 129 ~~l~~s~~~L~~~~~~~~~~~la~f~~-~~~~~~l~~~~~~~~~~------~~~~l~~L~~~sll~~~ 189 (212)
..+..+++.| ++..+..+..++.... +-..+....+....|.. ...+++.|.+.++++..
T Consensus 273 ~~~~~~~~~l-~~~~~~~l~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~L~~~gli~~~ 339 (384)
T 2qby_B 273 ERLIEAVKAL-PFHYKLALRSLIESEDVMSAHKMYTDLCNKFKQKPLSYRRFSDIISELDMFGIVKIR 339 (384)
T ss_dssp HHHHHHHHSS-CHHHHHHHHHHHTCCBHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred chHHHHHHcC-CHHHHHHHHHHHHhcccChHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCCEEEE
Confidence 2344566889 8888877776766111 10011222222222211 13368999999999864
No 9
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.66 E-value=0.0003 Score=57.52 Aligned_cols=200 Identities=15% Similarity=0.096 Sum_probs=114.3
Q ss_pred hHHHHHHHHHHhc--cCeEEEEecCCCCh--hhHhhhhcccCCCC----CCcEEEEEcCChhHHhhcC-------CCceE
Q 047158 7 IDRGLNMMSSRLL--HRRVFVVLDNLDHI--DQLKPLAGENKWFG----SGSRIIITNRNEHLLKVFE-------VDGVC 71 (212)
Q Consensus 7 ~~~~~~~l~~~L~--~kr~LlvlDdv~~~--~~~~~l~~~~~~~~----~gs~iivTtR~~~~~~~~~-------~~~~~ 71 (212)
..++.+.+...+. +++.+||+|+++.. ..+..+...+.... .+..||++|+.......+. ....+
T Consensus 109 ~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l~~~~~~r~~~~~i 188 (389)
T 1fnn_A 109 RDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLDPSTRGIMGKYVI 188 (389)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTSCHHHHHHHTTCEE
T ss_pred HHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHhCHHhhhcCCCceE
Confidence 3444555555554 45789999999763 44455544333211 3667888887764433322 12369
Q ss_pred eCCCCChHHHHHHHHHhhcC---CCCCChhHHHHHHHHHHHh---------CCCCch-----h---hh------ccCCch
Q 047158 72 TVPRLCLGKSFQLFSWHAFR---KDKPPQRFMKLSRELLRCA---------EGLPLE-----E---KL------KRIPNE 125 (212)
Q Consensus 72 ~l~~l~~~~a~~Ll~~~~~~---~~~~~~~~~~~~~~i~~~c---------~glPLa-----~---~l------~~~~~~ 125 (212)
.+++++.++..+++...+.. ..... .+....+++.+ +|.|-. . .. ......
T Consensus 189 ~~~pl~~~~~~~~l~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~ 265 (389)
T 1fnn_A 189 RFSPYTKDQIFDILLDRAKAGLAEGSYS---EDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQQNGRKHIAPE 265 (389)
T ss_dssp ECCCCBHHHHHHHHHHHHHHHBCTTSSC---HHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHHHHTTCSSCCHH
T ss_pred EeCCCCHHHHHHHHHHHHHhhcCCCCCC---HHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHH
Confidence 99999999999999876532 22222 34567788888 677643 0 00 112223
Q ss_pred hHHHHHHH--------hhcCCCCchhhhHHhhhhccC---C--CCCHHHHHHhhhh----cCCc------chhhHHHHhh
Q 047158 126 EILNKLRV--------SFDVLNDDEEKNVFMDIAHLF---V--GMDKDYVLKILQG----CGFS------SEIVFFVLTQ 182 (212)
Q Consensus 126 ~v~~~l~~--------s~~~L~~~~~~~~~~~la~f~---~--~~~~~~l~~~~~~----~~~~------~~~~l~~L~~ 182 (212)
.+..++.. .+..| ++..+.++..++.+. . .++...+...+.. .+.. ...+++.|.+
T Consensus 266 ~v~~~~~~~~~~~~~~~l~~l-~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ 344 (389)
T 1fnn_A 266 DVRKSSKEVLFGISEEVLIGL-PLHEKLFLLAIVRSLKISHTPYITFGDAEESYKIVCEEYGERPRVHSQLWSYLNDLRE 344 (389)
T ss_dssp HHHHHHHHHSCCCCHHHHHHS-CHHHHHHHHHHHHHHHHHCSSCEEHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHcC-CHHHHHHHHHHHHHHhhccCCCccHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHh
Confidence 34443332 35567 777777777677553 2 3555555443322 1211 2346999999
Q ss_pred ccCceecCC-------CcE-------EecHHHHHHHHHHHhc
Q 047158 183 RCLIVIDED-------NRL-------KMHDLIRDMKEKLFAK 210 (212)
Q Consensus 183 ~sll~~~~~-------~~~-------~mH~lv~~~a~~~~~~ 210 (212)
.++|..... |+| ..|++++.+...+..+
T Consensus 345 ~gli~~~~~~~~~g~~g~~~~~~l~~~~~~v~~~~~~~~~~~ 386 (389)
T 1fnn_A 345 KGIVETRQNKRGEGVRGRTTLISIGTEPLDTLEAVITKLIKE 386 (389)
T ss_dssp TTSSEEEEC---------CEEEECCSSCHHHHHHHHHHHHHH
T ss_pred CCCeEEeeeccCCCCCCceeEEEeCCCHHHHHHHHHHHHHHH
Confidence 999987533 332 2456666666655543
No 10
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.57 E-value=0.00017 Score=58.81 Aligned_cols=187 Identities=15% Similarity=0.126 Sum_probs=102.9
Q ss_pred hHHHHHHHHHHhcc--CeEEEEecCCCChh------hHhhhhcccCC-CCCCcEEEEEcCChhHHhhcC-------CCce
Q 047158 7 IDRGLNMMSSRLLH--RRVFVVLDNLDHID------QLKPLAGENKW-FGSGSRIIITNRNEHLLKVFE-------VDGV 70 (212)
Q Consensus 7 ~~~~~~~l~~~L~~--kr~LlvlDdv~~~~------~~~~l~~~~~~-~~~gs~iivTtR~~~~~~~~~-------~~~~ 70 (212)
..+..+.+.+.+.. ++.+||+|+++... .+..+...... ...+..+|+||+.......+. ....
T Consensus 112 ~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~~~~~~~~~~r~~~~~ 191 (386)
T 2qby_A 112 IAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFVDLLDPRVKSSLSEEE 191 (386)
T ss_dssp HHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGGGGCTTHHHHTTTTEE
T ss_pred HHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChHhhhCHHHhccCCCee
Confidence 44555666666653 48999999997532 23333322211 123556788887664333221 1247
Q ss_pred EeCCCCChHHHHHHHHHhhc---CCCCCChhHHHHHHHHHHHhC---CCCch--------hhhc------cCCchhHH--
Q 047158 71 CTVPRLCLGKSFQLFSWHAF---RKDKPPQRFMKLSRELLRCAE---GLPLE--------EKLK------RIPNEEIL-- 128 (212)
Q Consensus 71 ~~l~~l~~~~a~~Ll~~~~~---~~~~~~~~~~~~~~~i~~~c~---glPLa--------~~l~------~~~~~~v~-- 128 (212)
+.+++++.++..+++...+. ...... ......+.+.++ |.|.. ..+. ......+.
T Consensus 192 i~l~~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~~~~~i~~~~v~~a 268 (386)
T 2qby_A 192 IIFPPYNAEELEDILTKRAQMAFKPGVLP---DNVIKLCAALAAREHGDARRALDLLRVSGEIAERMKDTKVKEEYVYMA 268 (386)
T ss_dssp EEECCCCHHHHHHHHHHHHHHHBCSSCSC---HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHH
T ss_pred EEeCCCCHHHHHHHHHHHHHhhccCCCCC---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCccCHHHHHHH
Confidence 99999999999999987542 222222 234455666666 88874 0000 11112222
Q ss_pred ------HHHHHhhcCCCCchhhhHHhhhhccCC-C---CCHHHH----HHhhhhcCCc------chhhHHHHhhccCcee
Q 047158 129 ------NKLRVSFDVLNDDEEKNVFMDIAHLFV-G---MDKDYV----LKILQGCGFS------SEIVFFVLTQRCLIVI 188 (212)
Q Consensus 129 ------~~l~~s~~~L~~~~~~~~~~~la~f~~-~---~~~~~l----~~~~~~~~~~------~~~~l~~L~~~sll~~ 188 (212)
..+.-++..+ ++..+..+..++.+.. + +....+ ..+....|.. ...+++.|.+.++++.
T Consensus 269 ~~~~~~~~~~~~~~~l-~~~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~l~~L~~~gli~~ 347 (386)
T 2qby_A 269 KEEIERDRVRDIILTL-PFHSKLVLMAVVSISSEENVVSTTGAVYETYLNICKKLGVEAVTQRRVSDIINELDMVGILTA 347 (386)
T ss_dssp HHHHHHHHHHHHHHTS-CHHHHHHHHHHHHHC-----CEEHHHHHHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHhhchHHHHHHcC-CHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCEEE
Confidence 3455567788 8888877777774322 2 333222 1111111111 2447999999999986
Q ss_pred cC-----CCcEEec
Q 047158 189 DE-----DNRLKMH 197 (212)
Q Consensus 189 ~~-----~~~~~mH 197 (212)
.. .|+|+.+
T Consensus 348 ~~~~~~~~g~y~~~ 361 (386)
T 2qby_A 348 KVVNRGRYGKTKEI 361 (386)
T ss_dssp EECCCTTSCCCEEE
T ss_pred EeecCCCCCCeEEE
Confidence 42 3556555
No 11
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=97.34 E-value=0.00074 Score=50.92 Aligned_cols=95 Identities=11% Similarity=0.013 Sum_probs=63.8
Q ss_pred cCeEEEEecCCCC--hhhHhhhhcccCCCCCCcEEEEEcCChhHHh-h-cCCCceEeCCCCChHHHHHHHHHhhcCCCCC
Q 047158 20 HRRVFVVLDNLDH--IDQLKPLAGENKWFGSGSRIIITNRNEHLLK-V-FEVDGVCTVPRLCLGKSFQLFSWHAFRKDKP 95 (212)
Q Consensus 20 ~kr~LlvlDdv~~--~~~~~~l~~~~~~~~~gs~iivTtR~~~~~~-~-~~~~~~~~l~~l~~~~a~~Ll~~~~~~~~~~ 95 (212)
+++.+||+||++. ...++.+...+.....+..+|+||+...... . ......+.+++++.++..+++...+......
T Consensus 125 ~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~~ 204 (250)
T 1njg_A 125 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIA 204 (250)
T ss_dssp SSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHTTCC
T ss_pred CCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCCHHHHHHhhhccCCCCCHHHHHHHHHHHHHhcCCC
Confidence 4578999999975 4456666655544456778888887654211 1 1123579999999999999998776432211
Q ss_pred ChhHHHHHHHHHHHhCCCCch
Q 047158 96 PQRFMKLSRELLRCAEGLPLE 116 (212)
Q Consensus 96 ~~~~~~~~~~i~~~c~glPLa 116 (212)
. .......|++.|+|.|..
T Consensus 205 ~--~~~~~~~l~~~~~G~~~~ 223 (250)
T 1njg_A 205 H--EPRALQLLARAAEGSLRD 223 (250)
T ss_dssp B--CHHHHHHHHHHHTTCHHH
T ss_pred C--CHHHHHHHHHHcCCCHHH
Confidence 1 134567888999998864
No 12
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.95 E-value=0.0032 Score=51.19 Aligned_cols=179 Identities=12% Similarity=0.105 Sum_probs=97.6
Q ss_pred hHHHHHHHHHHhc--cCeEEEEecCCCChhh-------HhhhhcccCCC--CCCcEEEEEcCChhHHhhc------CCC-
Q 047158 7 IDRGLNMMSSRLL--HRRVFVVLDNLDHIDQ-------LKPLAGENKWF--GSGSRIIITNRNEHLLKVF------EVD- 68 (212)
Q Consensus 7 ~~~~~~~l~~~L~--~kr~LlvlDdv~~~~~-------~~~l~~~~~~~--~~gs~iivTtR~~~~~~~~------~~~- 68 (212)
..+..+.+.+.+. +++.+|++|+++.... +..+....... ..+..+|.||+.......+ ...
T Consensus 114 ~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~~~~~~~l~~~l~~r~~~ 193 (387)
T 2v1u_A 114 VGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNSLGFVENLEPRVKSSLGE 193 (387)
T ss_dssp HHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSCSTTSSSSCHHHHTTTTS
T ss_pred HHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECCCchHhhhCHHHHhcCCC
Confidence 4455566666663 4588999999986432 22222222111 3455678887765321111 112
Q ss_pred ceEeCCCCChHHHHHHHHHhhc---CCCCCChhHHHHHHHHHHHhC---CCCch--------hhh------ccCCchhHH
Q 047158 69 GVCTVPRLCLGKSFQLFSWHAF---RKDKPPQRFMKLSRELLRCAE---GLPLE--------EKL------KRIPNEEIL 128 (212)
Q Consensus 69 ~~~~l~~l~~~~a~~Ll~~~~~---~~~~~~~~~~~~~~~i~~~c~---glPLa--------~~l------~~~~~~~v~ 128 (212)
..+.+++++.++..+++...+. ......+ +....+++.++ |.|-. ... .......+.
T Consensus 194 ~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~ 270 (387)
T 2v1u_A 194 VELVFPPYTAPQLRDILETRAEEAFNPGVLDP---DVVPLCAALAAREHGDARRALDLLRVAGEIAERRREERVRREHVY 270 (387)
T ss_dssp EECCBCCCCHHHHHHHHHHHHHHHBCTTTBCS---SHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHH
T ss_pred eEEeeCCCCHHHHHHHHHHHHHhhccCCCCCH---HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHcCCCCcCHHHHH
Confidence 4789999999999999987642 2222222 23556677777 88833 000 011112222
Q ss_pred --------HHHHHhhcCCCCchhhhHHhhhhccCCC---CCHHHHHHh----hhhcCCc------chhhHHHHhhccCce
Q 047158 129 --------NKLRVSFDVLNDDEEKNVFMDIAHLFVG---MDKDYVLKI----LQGCGFS------SEIVFFVLTQRCLIV 187 (212)
Q Consensus 129 --------~~l~~s~~~L~~~~~~~~~~~la~f~~~---~~~~~l~~~----~~~~~~~------~~~~l~~L~~~sll~ 187 (212)
..+.-++..| ++..+..+..++....+ +....+.+. ....+.. ...+++.|...|+++
T Consensus 271 ~a~~~~~~~~~~~~~~~l-~~~~~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~gli~ 349 (387)
T 2v1u_A 271 SARAEIERDRVSEVVRTL-PLHAKLVLLSIMMLEDGGRPASTGEIYERYKELTSTLGLEHVTLRRVSGIISELDMLGIVK 349 (387)
T ss_dssp HHHHHHHHHHHHHHHHSS-CHHHHHHHHHHHHHSSSSCCEEHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHhhchHHHHHHcC-CHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCeE
Confidence 2334456788 88887777766633222 444422222 1112211 234699999999999
Q ss_pred ec
Q 047158 188 ID 189 (212)
Q Consensus 188 ~~ 189 (212)
..
T Consensus 350 ~~ 351 (387)
T 2v1u_A 350 SR 351 (387)
T ss_dssp EE
T ss_pred EE
Confidence 74
No 13
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.63 E-value=0.01 Score=43.98 Aligned_cols=94 Identities=11% Similarity=-0.015 Sum_probs=59.1
Q ss_pred cCeEEEEecCCCCh--hhHhhhhcccCCCCCCcEEEEEcCChhHH-hh-cCCCceEeCCCCChHHHHHHHHHhhcCCCCC
Q 047158 20 HRRVFVVLDNLDHI--DQLKPLAGENKWFGSGSRIIITNRNEHLL-KV-FEVDGVCTVPRLCLGKSFQLFSWHAFRKDKP 95 (212)
Q Consensus 20 ~kr~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~iivTtR~~~~~-~~-~~~~~~~~l~~l~~~~a~~Ll~~~~~~~~~~ 95 (212)
+++.+||+||++.. ...+.+...+.....++.+|+||+..... .. ......+.+.+++.++..+++...+......
T Consensus 101 ~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~ 180 (226)
T 2chg_A 101 APFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEKEGVK 180 (226)
T ss_dssp CSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCC
T ss_pred cCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCceeecCCCCHHHHHHHHHHHHHHcCCC
Confidence 56889999999753 33444444333344577888888765321 11 1122378999999999999998766321111
Q ss_pred ChhHHHHHHHHHHHhCCCCc
Q 047158 96 PQRFMKLSRELLRCAEGLPL 115 (212)
Q Consensus 96 ~~~~~~~~~~i~~~c~glPL 115 (212)
. .......+++.++|.|.
T Consensus 181 ~--~~~~~~~l~~~~~g~~r 198 (226)
T 2chg_A 181 I--TEDGLEALIYISGGDFR 198 (226)
T ss_dssp B--CHHHHHHHHHHHTTCHH
T ss_pred C--CHHHHHHHHHHcCCCHH
Confidence 1 12445677788888775
No 14
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.56 E-value=0.0057 Score=48.46 Aligned_cols=96 Identities=11% Similarity=0.067 Sum_probs=61.8
Q ss_pred ccCeEEEEecCCCC--hhhHhhhhcccCCCCCCcEEEEEcCChhHH-hh-cCCCceEeCCCCChHHHHHHHHHhhcCCCC
Q 047158 19 LHRRVFVVLDNLDH--IDQLKPLAGENKWFGSGSRIIITNRNEHLL-KV-FEVDGVCTVPRLCLGKSFQLFSWHAFRKDK 94 (212)
Q Consensus 19 ~~kr~LlvlDdv~~--~~~~~~l~~~~~~~~~gs~iivTtR~~~~~-~~-~~~~~~~~l~~l~~~~a~~Ll~~~~~~~~~ 94 (212)
.+++.++|+|+++. ....+.+...+.....++.+|+||+..... .. ......+.+.+++.++..+++...+.....
T Consensus 105 ~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~ 184 (323)
T 1sxj_B 105 PGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAILRYSKLSDEDVLKRLLQIIKLEDV 184 (323)
T ss_dssp TTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTC
T ss_pred CCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhceEEeecCCCHHHHHHHHHHHHHHcCC
Confidence 44588999999985 334444544443344577888888764321 11 122347999999999999999876532111
Q ss_pred CChhHHHHHHHHHHHhCCCCch
Q 047158 95 PPQRFMKLSRELLRCAEGLPLE 116 (212)
Q Consensus 95 ~~~~~~~~~~~i~~~c~glPLa 116 (212)
. -..+....+++.++|.|..
T Consensus 185 ~--~~~~~~~~l~~~~~G~~r~ 204 (323)
T 1sxj_B 185 K--YTNDGLEAIIFTAEGDMRQ 204 (323)
T ss_dssp C--BCHHHHHHHHHHHTTCHHH
T ss_pred C--CCHHHHHHHHHHcCCCHHH
Confidence 1 1134567889999999954
No 15
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=95.86 E-value=0.054 Score=42.88 Aligned_cols=170 Identities=13% Similarity=-0.008 Sum_probs=92.1
Q ss_pred CeEEEEecCCCChh--hHhhhhcccCCC------------------CCCcEEEEEcCChhH-HhhcC--CCceEeCCCCC
Q 047158 21 RRVFVVLDNLDHID--QLKPLAGENKWF------------------GSGSRIIITNRNEHL-LKVFE--VDGVCTVPRLC 77 (212)
Q Consensus 21 kr~LlvlDdv~~~~--~~~~l~~~~~~~------------------~~gs~iivTtR~~~~-~~~~~--~~~~~~l~~l~ 77 (212)
+..+|++|+++... ....+...+... .++..+|.||..... ...+- ....+.+++++
T Consensus 90 ~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~~~~~~~l~~R~~~~i~l~~~~ 169 (324)
T 1hqc_A 90 EGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLSRFGIVEHLEYYT 169 (324)
T ss_dssp TTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESCCSSCSCSTTTTCSCEEECCCCC
T ss_pred CCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCCCcccCCHHHHhcccEEEecCCCC
Confidence 56799999998642 233332211110 023456666653321 11111 23578999999
Q ss_pred hHHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCCCch-----hhh---c------cCCchhHHHH---HHHhhcCCCC
Q 047158 78 LGKSFQLFSWHAFRKDKPPQRFMKLSRELLRCAEGLPLE-----EKL---K------RIPNEEILNK---LRVSFDVLND 140 (212)
Q Consensus 78 ~~~a~~Ll~~~~~~~~~~~~~~~~~~~~i~~~c~glPLa-----~~l---~------~~~~~~v~~~---l~~s~~~L~~ 140 (212)
.++..+++...+....... ..+....+++.++|.|-. ... . ......+..+ +..+...+ +
T Consensus 170 ~~e~~~~l~~~~~~~~~~~--~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~~~~~~~i~~~~~~~~~~~~~~~~~~l-~ 246 (324)
T 1hqc_A 170 PEELAQGVMRDARLLGVRI--TEEAALEIGRRSRGTMRVAKRLFRRVRDFAQVAGEEVITRERALEALAALGLDELGL-E 246 (324)
T ss_dssp HHHHHHHHHHHHHTTTCCC--CHHHHHHHHHHSCSCHHHHHHHHHHHTTTSTTTSCSCCCHHHHHHHHHHHTCCTTCC-C
T ss_pred HHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcccccCC-C
Confidence 9999999887764322211 134567888899999865 111 1 1111223322 33344566 6
Q ss_pred chhhhHHhhhhc-cCC-CCCHHHHHHhhhhcCCcchhhHHH-HhhccCceecCCCc
Q 047158 141 DEEKNVFMDIAH-LFV-GMDKDYVLKILQGCGFSSEIVFFV-LTQRCLIVIDEDNR 193 (212)
Q Consensus 141 ~~~~~~~~~la~-f~~-~~~~~~l~~~~~~~~~~~~~~l~~-L~~~sll~~~~~~~ 193 (212)
...+..+..+.. +.. .+....+...+....-.....++. +++.++++....|+
T Consensus 247 ~~e~~~i~~~~~~~~g~~~~~~~~a~~lgi~~~tl~~~l~~~~i~~~li~~~~~g~ 302 (324)
T 1hqc_A 247 KRDREILEVLILRFGGGPVGLATLATALSEDPGTLEEVHEPYLIRQGLLKRTPRGR 302 (324)
T ss_dssp HHHHHHHHHHHHHSCSSCCCHHHHHHHTTSCHHHHHHHTHHHHHHTTSEEEETTEE
T ss_pred HHHHHHHHHHHHHhcCCCchHHHHHHHhCCCHHHHHHHHhHHHHHhcchhcCCccc
Confidence 666777766553 333 366776666554322222222333 88889998765554
No 16
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=94.67 E-value=0.09 Score=41.45 Aligned_cols=95 Identities=16% Similarity=0.099 Sum_probs=61.3
Q ss_pred cCeEEEEecCCCCh--hhHhhhhcccCCCCCCcEEEEEcCChhHH-hhc-CCCceEeCCCCChHHHHHHHHHhhcCCCCC
Q 047158 20 HRRVFVVLDNLDHI--DQLKPLAGENKWFGSGSRIIITNRNEHLL-KVF-EVDGVCTVPRLCLGKSFQLFSWHAFRKDKP 95 (212)
Q Consensus 20 ~kr~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~iivTtR~~~~~-~~~-~~~~~~~l~~l~~~~a~~Ll~~~~~~~~~~ 95 (212)
+++.++|+|+++.. ...+.+...+.....++.+|+||...... ..+ .-...+.+.+++.++..+++...+......
T Consensus 109 ~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~l~~~~~~~~l~~~~~~~~~~ 188 (327)
T 1iqp_A 109 ASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLE 188 (327)
T ss_dssp CSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTEEEEECCCCCHHHHHHHHHHHHHTTTCE
T ss_pred CCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhCcEEEecCCCHHHHHHHHHHHHHhcCCC
Confidence 56889999999853 44555554444344577888888765321 111 112368999999999999998766432211
Q ss_pred ChhHHHHHHHHHHHhCCCCch
Q 047158 96 PQRFMKLSRELLRCAEGLPLE 116 (212)
Q Consensus 96 ~~~~~~~~~~i~~~c~glPLa 116 (212)
-..+....+++.++|.|-.
T Consensus 189 --~~~~~~~~l~~~~~g~~r~ 207 (327)
T 1iqp_A 189 --LTEEGLQAILYIAEGDMRR 207 (327)
T ss_dssp --ECHHHHHHHHHHHTTCHHH
T ss_pred --CCHHHHHHHHHHCCCCHHH
Confidence 1234567788888998865
No 17
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=94.44 E-value=0.12 Score=41.36 Aligned_cols=90 Identities=11% Similarity=0.015 Sum_probs=60.4
Q ss_pred cCeEEEEecCCCCh--hhHhhhhcccCCCCCCcEEEEEcCChh-HHhhc-CCCceEeCCCCChHHHHHHHHHhhcCCCCC
Q 047158 20 HRRVFVVLDNLDHI--DQLKPLAGENKWFGSGSRIIITNRNEH-LLKVF-EVDGVCTVPRLCLGKSFQLFSWHAFRKDKP 95 (212)
Q Consensus 20 ~kr~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~iivTtR~~~-~~~~~-~~~~~~~l~~l~~~~a~~Ll~~~~~~~~~~ 95 (212)
+++-++|+|+++.. ...+.|...+.....++.+|++|.+.. +...+ .-...+.+.+++.++..+.+.... ..
T Consensus 107 ~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~----~~ 182 (334)
T 1a5t_A 107 GGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRCRLHYLAPPPEQYAVTWLSREV----TM 182 (334)
T ss_dssp SSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHC----CC
T ss_pred CCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHhhcceeeeCCCCCHHHHHHHHHHhc----CC
Confidence 45778999999853 345556655554455677777776653 22211 224579999999999999888764 11
Q ss_pred ChhHHHHHHHHHHHhCCCCch
Q 047158 96 PQRFMKLSRELLRCAEGLPLE 116 (212)
Q Consensus 96 ~~~~~~~~~~i~~~c~glPLa 116 (212)
. .+.+..+++.++|.|..
T Consensus 183 ~---~~~~~~l~~~s~G~~r~ 200 (334)
T 1a5t_A 183 S---QDALLAALRLSAGSPGA 200 (334)
T ss_dssp C---HHHHHHHHHHTTTCHHH
T ss_pred C---HHHHHHHHHHcCCCHHH
Confidence 1 23456788899998865
No 18
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=94.03 E-value=0.24 Score=38.79 Aligned_cols=95 Identities=11% Similarity=-0.011 Sum_probs=60.9
Q ss_pred cCeEEEEecCCCCh--hhHhhhhcccCCCCCCcEEEEEcCChhH-Hhh-cCCCceEeCCCCChHHHHHHHHHhhcCCCCC
Q 047158 20 HRRVFVVLDNLDHI--DQLKPLAGENKWFGSGSRIIITNRNEHL-LKV-FEVDGVCTVPRLCLGKSFQLFSWHAFRKDKP 95 (212)
Q Consensus 20 ~kr~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~iivTtR~~~~-~~~-~~~~~~~~l~~l~~~~a~~Ll~~~~~~~~~~ 95 (212)
+++.++|+|+++.. ...+.+...+.....++.+|+||..... ... ......+.+.+++.++..+++...+......
T Consensus 101 ~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~ 180 (319)
T 2chq_A 101 APFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEKEGVK 180 (319)
T ss_dssp CCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHTTCEEEECCCCCHHHHHHHHHHHHHTTCCC
T ss_pred CCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHhhCeEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 56789999999753 4455666555555567788888765431 111 1123479999999999999988766432211
Q ss_pred ChhHHHHHHHHHHHhCCCCch
Q 047158 96 PQRFMKLSRELLRCAEGLPLE 116 (212)
Q Consensus 96 ~~~~~~~~~~i~~~c~glPLa 116 (212)
. ..+....+++.++|.+-.
T Consensus 181 i--~~~~l~~l~~~~~G~~r~ 199 (319)
T 2chq_A 181 I--TEDGLEALIYISGGDFRK 199 (319)
T ss_dssp B--CHHHHHHHHHTTTTCHHH
T ss_pred C--CHHHHHHHHHHcCCCHHH
Confidence 1 134456777778887654
No 19
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=93.84 E-value=0.11 Score=41.89 Aligned_cols=95 Identities=9% Similarity=-0.007 Sum_probs=60.1
Q ss_pred cCeEEEEecCCCC--hhhHhhhhcccCCCCCCcEEEEEcCChhH-Hhh-cCCCceEeCCCCChHHHHHHHHHhhcCCCCC
Q 047158 20 HRRVFVVLDNLDH--IDQLKPLAGENKWFGSGSRIIITNRNEHL-LKV-FEVDGVCTVPRLCLGKSFQLFSWHAFRKDKP 95 (212)
Q Consensus 20 ~kr~LlvlDdv~~--~~~~~~l~~~~~~~~~gs~iivTtR~~~~-~~~-~~~~~~~~l~~l~~~~a~~Ll~~~~~~~~~~ 95 (212)
+++.++|+|+++. ....+.+...+.....+..+|++|.+... ... ......+++.+++.++..+++...+......
T Consensus 118 ~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~~ 197 (373)
T 1jr3_A 118 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIA 197 (373)
T ss_dssp SSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCC
T ss_pred CCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCcHHHHhheeEeeCCCCCHHHHHHHHHHHHHHcCCC
Confidence 4578999999974 34455555544444456677777764432 111 1123578999999999999998665221111
Q ss_pred ChhHHHHHHHHHHHhCCCCch
Q 047158 96 PQRFMKLSRELLRCAEGLPLE 116 (212)
Q Consensus 96 ~~~~~~~~~~i~~~c~glPLa 116 (212)
-..+....+++.++|.|..
T Consensus 198 --~~~~a~~~l~~~~~G~~r~ 216 (373)
T 1jr3_A 198 --HEPRALQLLARAAEGSLRD 216 (373)
T ss_dssp --BCHHHHHHHHHHSSSCHHH
T ss_pred --CCHHHHHHHHHHCCCCHHH
Confidence 1134467788889998876
No 20
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=89.61 E-value=1.7 Score=33.24 Aligned_cols=96 Identities=16% Similarity=0.161 Sum_probs=53.1
Q ss_pred HHHHHhccCeEEEEecCCCCh------------hhHhhhhcccCC---CCCCcEEEEEcCChhHHhhc---C-CCceEeC
Q 047158 13 MMSSRLLHRRVFVVLDNLDHI------------DQLKPLAGENKW---FGSGSRIIITNRNEHLLKVF---E-VDGVCTV 73 (212)
Q Consensus 13 ~l~~~L~~kr~LlvlDdv~~~------------~~~~~l~~~~~~---~~~gs~iivTtR~~~~~~~~---~-~~~~~~l 73 (212)
.+......+..+|++|+++.. ..++.+...+.. .+....||.||......... . ....+.+
T Consensus 116 ~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~~~~l~~rf~~~i~~ 195 (272)
T 1d2n_A 116 IFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEMLNAFSTTIHV 195 (272)
T ss_dssp HHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTTCTTTSSEEEEC
T ss_pred HHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhcchhhhhcccceEEcC
Confidence 333344467899999998643 122333332221 22344577778776554431 1 1456889
Q ss_pred CCCCh-HHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCCCc
Q 047158 74 PRLCL-GKSFQLFSWHAFRKDKPPQRFMKLSRELLRCAEGLPL 115 (212)
Q Consensus 74 ~~l~~-~~a~~Ll~~~~~~~~~~~~~~~~~~~~i~~~c~glPL 115 (212)
++++. ++-.+++.... ... ......+++.+.|.++
T Consensus 196 p~l~~r~~i~~i~~~~~----~~~---~~~~~~l~~~~~g~~~ 231 (272)
T 1d2n_A 196 PNIATGEQLLEALELLG----NFK---DKERTTIAQQVKGKKV 231 (272)
T ss_dssp CCEEEHHHHHHHHHHHT----CSC---HHHHHHHHHHHTTSEE
T ss_pred CCccHHHHHHHHHHhcC----CCC---HHHHHHHHHHhcCCCc
Confidence 98888 56556555421 111 2345677777777553
No 21
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=89.41 E-value=3.4 Score=31.13 Aligned_cols=101 Identities=14% Similarity=0.150 Sum_probs=52.2
Q ss_pred HHHHHhccCeEEEEecCCCCh-----------------hhHhhhhcccCC--CCCCcEEEEEcCChhHHhh--c---CCC
Q 047158 13 MMSSRLLHRRVFVVLDNLDHI-----------------DQLKPLAGENKW--FGSGSRIIITNRNEHLLKV--F---EVD 68 (212)
Q Consensus 13 ~l~~~L~~kr~LlvlDdv~~~-----------------~~~~~l~~~~~~--~~~gs~iivTtR~~~~~~~--~---~~~ 68 (212)
.+.........+|++|+++.. ..+..+...+.. ...+..||.||........ . -..
T Consensus 90 ~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~~ld~~l~~~~R~~ 169 (262)
T 2qz4_A 90 LFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDGALMRPGRLD 169 (262)
T ss_dssp HHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEEEEESCGGGGGSGGGSTTSCC
T ss_pred HHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCChhhcCHHHhcCCcCC
Confidence 344444456789999999864 112233322221 1235566777765442211 1 123
Q ss_pred ceEeCCCCChHHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCCC
Q 047158 69 GVCTVPRLCLGKSFQLFSWHAFRKDKPPQRFMKLSRELLRCAEGLP 114 (212)
Q Consensus 69 ~~~~l~~l~~~~a~~Ll~~~~~~~~~~~~~~~~~~~~i~~~c~glP 114 (212)
..+.++.++.++-.+++........... ........+.+.+.|.+
T Consensus 170 ~~i~i~~p~~~~r~~il~~~~~~~~~~~-~~~~~~~~l~~~~~g~~ 214 (262)
T 2qz4_A 170 RHVFIDLPTLQERREIFEQHLKSLKLTQ-SSTFYSQRLAELTPGFS 214 (262)
T ss_dssp EEEECCSCCHHHHHHHHHHHHHHTTCCB-THHHHHHHHHHTCTTCC
T ss_pred eEEEeCCcCHHHHHHHHHHHHHhCCCCc-chhhHHHHHHHHCCCCC
Confidence 5688999999999998887653222111 11222355666565554
No 22
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=89.03 E-value=0.6 Score=37.07 Aligned_cols=178 Identities=11% Similarity=0.008 Sum_probs=95.7
Q ss_pred cCeEEEEecCCCCh--hhHhhhhcccCCC------------------CCCcEEEEEcCChhHH-hhc--CCCceEeCCCC
Q 047158 20 HRRVFVVLDNLDHI--DQLKPLAGENKWF------------------GSGSRIIITNRNEHLL-KVF--EVDGVCTVPRL 76 (212)
Q Consensus 20 ~kr~LlvlDdv~~~--~~~~~l~~~~~~~------------------~~gs~iivTtR~~~~~-~~~--~~~~~~~l~~l 76 (212)
.+..+|++|+++.. .....+...+... .++..+|.+|...... ..+ -....+.++++
T Consensus 105 ~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~atn~~~~l~~~L~~R~~~~i~l~~~ 184 (338)
T 3pfi_A 105 SEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTRAGMLSNPLRDRFGMQFRLEFY 184 (338)
T ss_dssp CTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEEEESCGGGSCHHHHTTCSEEEECCCC
T ss_pred cCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEEeCCCccccCHHHHhhcCEEeeCCCc
Confidence 35678999999853 2233333222111 1124566565543211 111 12457999999
Q ss_pred ChHHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCCCch-----hh---h---cc---CCchhHHHH---HHHhhcCCC
Q 047158 77 CLGKSFQLFSWHAFRKDKPPQRFMKLSRELLRCAEGLPLE-----EK---L---KR---IPNEEILNK---LRVSFDVLN 139 (212)
Q Consensus 77 ~~~~a~~Ll~~~~~~~~~~~~~~~~~~~~i~~~c~glPLa-----~~---l---~~---~~~~~v~~~---l~~s~~~L~ 139 (212)
+.++..+++...+..... .-.......+++.+.|.|-. .. + .. .....+... +..+...+
T Consensus 185 ~~~e~~~il~~~~~~~~~--~~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~~~~~~~i~~~~~~~~~~~~~~~~~~l- 261 (338)
T 3pfi_A 185 KDSELALILQKAALKLNK--TCEEKAALEIAKRSRSTPRIALRLLKRVRDFADVNDEEIITEKRANEALNSLGVNELGF- 261 (338)
T ss_dssp CHHHHHHHHHHHHHHTTC--EECHHHHHHHHHTTTTCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHTCCTTCC-
T ss_pred CHHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHHhCCcccCC-
Confidence 999999999876633221 11234566777788888733 11 1 11 111223322 33344455
Q ss_pred CchhhhHHhhhhccCC-CCCHHHHHHhhhhcCCcchhhHH-HHhhccCceecCCCcEEecHHH
Q 047158 140 DDEEKNVFMDIAHLFV-GMDKDYVLKILQGCGFSSEIVFF-VLTQRCLIVIDEDNRLKMHDLI 200 (212)
Q Consensus 140 ~~~~~~~~~~la~f~~-~~~~~~l~~~~~~~~~~~~~~l~-~L~~~sll~~~~~~~~~mH~lv 200 (212)
....++.+..++.... .+....+...+....-.....++ .|++.+++.....|+.....-+
T Consensus 262 ~~~e~~~l~~l~~~~~~~~~~~~~a~~lg~~~~tl~~~l~~~l~~~gli~~~~~g~~~t~~~~ 324 (338)
T 3pfi_A 262 DAMDLRYLELLTAAKQKPIGLASIAAALSEDENTIEDVIEPYLLANGYIERTAKGRIASAKSY 324 (338)
T ss_dssp CHHHHHHHHHHHHSCSCCBCHHHHHHHTTCCHHHHHHTTHHHHHHTTSEEEETTEEEECHHHH
T ss_pred CHHHHHHHHHHHHhcCCCchHHHHHHHhCCCHHHHHHHHhHHHHHcCceecCCCcccccHHHH
Confidence 4444666665555422 26677776666543333333455 8999999998877765443333
No 23
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=88.80 E-value=0.46 Score=37.94 Aligned_cols=94 Identities=9% Similarity=0.045 Sum_probs=56.3
Q ss_pred CeEEEEecCCCChh--hHhhhhcccCCCCCCcEEEEEcCChhH-Hhhc-CCCceEeCCCCChHHHHHHHHHhhcCCCCCC
Q 047158 21 RRVFVVLDNLDHID--QLKPLAGENKWFGSGSRIIITNRNEHL-LKVF-EVDGVCTVPRLCLGKSFQLFSWHAFRKDKPP 96 (212)
Q Consensus 21 kr~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~iivTtR~~~~-~~~~-~~~~~~~l~~l~~~~a~~Ll~~~~~~~~~~~ 96 (212)
++-++|+|++...+ ..+.+...+.....++.+|++|.+... ...+ .-...+.+.+++.++..+.+...+......
T Consensus 134 ~~~vlilDE~~~L~~~~~~~L~~~le~~~~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~- 212 (354)
T 1sxj_E 134 RYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQ- 212 (354)
T ss_dssp CCEEEEEECTTSSCHHHHHHHHHHHHHSTTTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCE-
T ss_pred CCeEEEEeCccccCHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCC-
Confidence 55699999998632 233344333323346778888765432 1111 123579999999999999998765321111
Q ss_pred hhH-HHHHHHHHHHhCCCCch
Q 047158 97 QRF-MKLSRELLRCAEGLPLE 116 (212)
Q Consensus 97 ~~~-~~~~~~i~~~c~glPLa 116 (212)
-. ++.+..|++.++|.+-.
T Consensus 213 -~~~~~~l~~i~~~~~G~~r~ 232 (354)
T 1sxj_E 213 -LETKDILKRIAQASNGNLRV 232 (354)
T ss_dssp -ECCSHHHHHHHHHHTTCHHH
T ss_pred -CCcHHHHHHHHHHcCCCHHH
Confidence 01 23456778888887654
No 24
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=88.16 E-value=2.7 Score=33.43 Aligned_cols=108 Identities=11% Similarity=0.010 Sum_probs=64.1
Q ss_pred hHHHHHHHHHH-hccCeEEEEecCCCC---hhhHhhhhcccCCCCCCcEEEEEcCC-------hhHHhhc-CCCceEeCC
Q 047158 7 IDRGLNMMSSR-LLHRRVFVVLDNLDH---IDQLKPLAGENKWFGSGSRIIITNRN-------EHLLKVF-EVDGVCTVP 74 (212)
Q Consensus 7 ~~~~~~~l~~~-L~~kr~LlvlDdv~~---~~~~~~l~~~~~~~~~gs~iivTtR~-------~~~~~~~-~~~~~~~l~ 74 (212)
+.++.+.+... +-+++-++|+|++.. .+.++.|...+....+++.+|+++.+ ..+...+ .....++..
T Consensus 61 ~~~l~~~~~~~plf~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~ 140 (343)
T 1jr3_D 61 WNAIFSLCQAMSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQ 140 (343)
T ss_dssp HHHHHHHHHHHHHCCSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEEC
T ss_pred HHHHHHHhcCcCCccCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEee
Confidence 34444333322 345677888899865 34566666666555567777776643 2344443 234678999
Q ss_pred CCChHHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCCCch
Q 047158 75 RLCLGKSFQLFSWHAFRKDKPPQRFMKLSRELLRCAEGLPLE 116 (212)
Q Consensus 75 ~l~~~~a~~Ll~~~~~~~~~~~~~~~~~~~~i~~~c~glPLa 116 (212)
+++.++-.+.+...+-..... -.++.+..+++.++|-+.+
T Consensus 141 ~l~~~~l~~~l~~~~~~~g~~--i~~~a~~~l~~~~~gdl~~ 180 (343)
T 1jr3_D 141 TPEQAQLPRWVAARAKQLNLE--LDDAANQVLCYCYEGNLLA 180 (343)
T ss_dssp CCCTTHHHHHHHHHHHHTTCE--ECHHHHHHHHHSSTTCHHH
T ss_pred CCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHhchHHHH
Confidence 999988887777655222111 1234566677777776655
No 25
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=86.27 E-value=0.38 Score=35.78 Aligned_cols=92 Identities=9% Similarity=0.042 Sum_probs=48.2
Q ss_pred CeEEEEecCCCChh--h--HhhhhcccCC-CCCCc-EEEEEcCChh---------HHhhcCCCceEeCCCCChHHHHHHH
Q 047158 21 RRVFVVLDNLDHID--Q--LKPLAGENKW-FGSGS-RIIITNRNEH---------LLKVFEVDGVCTVPRLCLGKSFQLF 85 (212)
Q Consensus 21 kr~LlvlDdv~~~~--~--~~~l~~~~~~-~~~gs-~iivTtR~~~---------~~~~~~~~~~~~l~~l~~~~a~~Ll 85 (212)
+..+||+|+++... . .+.+...+.. ...+. .+|+||+... +...+.....+.+++++.++..+++
T Consensus 104 ~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~l~~r~~~~~~i~l~~~~~~~~~~~l 183 (242)
T 3bos_A 104 QFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVLPDLVSRMHWGLTYQLQPMMDDEKLAAL 183 (242)
T ss_dssp GSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCCHHHHHHHHHSEEEECCCCCGGGHHHHH
T ss_pred CCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhhhhhhhHhhcCceEEeCCCCHHHHHHHH
Confidence 45789999997532 1 2222221110 01122 4777775322 1111111267999999999999999
Q ss_pred HHhhcCCCCCChhHHHHHHHHHHHhCCCC
Q 047158 86 SWHAFRKDKPPQRFMKLSRELLRCAEGLP 114 (212)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~i~~~c~glP 114 (212)
...+....... ..+....+++.++|.+
T Consensus 184 ~~~~~~~~~~~--~~~~~~~l~~~~~g~~ 210 (242)
T 3bos_A 184 QRRAAMRGLQL--PEDVGRFLLNRMARDL 210 (242)
T ss_dssp HHHHHHTTCCC--CHHHHHHHHHHTTTCH
T ss_pred HHHHHHcCCCC--CHHHHHHHHHHccCCH
Confidence 87663221111 1234556666666543
No 26
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=83.74 E-value=9.1 Score=30.04 Aligned_cols=95 Identities=13% Similarity=0.039 Sum_probs=53.3
Q ss_pred ccCeEEEEecCCCChh-------------hHhhhhc---ccCCCCCCcEEEEEcCChhHHhh-c--CCCceEeCCCCChH
Q 047158 19 LHRRVFVVLDNLDHID-------------QLKPLAG---ENKWFGSGSRIIITNRNEHLLKV-F--EVDGVCTVPRLCLG 79 (212)
Q Consensus 19 ~~kr~LlvlDdv~~~~-------------~~~~l~~---~~~~~~~gs~iivTtR~~~~~~~-~--~~~~~~~l~~l~~~ 79 (212)
..+..+|++|+++... ....++. .......+..||.||........ + -....+.++..+.+
T Consensus 108 ~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~ 187 (322)
T 3eie_A 108 ENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLA 187 (322)
T ss_dssp HTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESCGGGSCHHHHHHCCEEEECCCCCHH
T ss_pred hcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceEEEEecCChhhCCHHHHcccCeEEEeCCCCHH
Confidence 3456899999997431 1122222 22122345566667765432111 0 13456889999999
Q ss_pred HHHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCCCc
Q 047158 80 KSFQLFSWHAFRKDKPPQRFMKLSRELLRCAEGLPL 115 (212)
Q Consensus 80 ~a~~Ll~~~~~~~~~~~~~~~~~~~~i~~~c~glPL 115 (212)
+-.++|............ ......|++.+.|+.-
T Consensus 188 ~r~~il~~~~~~~~~~~~--~~~l~~la~~t~g~sg 221 (322)
T 3eie_A 188 ARTTMFEINVGDTPCVLT--KEDYRTLGAMTEGYSG 221 (322)
T ss_dssp HHHHHHHHHHTTCCCCCC--HHHHHHHHHTTTTCCH
T ss_pred HHHHHHHHHhccCCCCCC--HHHHHHHHHHcCCCCH
Confidence 999999887744322211 2235567777776543
No 27
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=83.69 E-value=2.7 Score=32.28 Aligned_cols=75 Identities=17% Similarity=0.216 Sum_probs=44.4
Q ss_pred HhccCeEEEEecCCCCh----------------hhHhhhhcccC--CCCCCcEEEEEcCChhHHhh--c---CCCceEeC
Q 047158 17 RLLHRRVFVVLDNLDHI----------------DQLKPLAGENK--WFGSGSRIIITNRNEHLLKV--F---EVDGVCTV 73 (212)
Q Consensus 17 ~L~~kr~LlvlDdv~~~----------------~~~~~l~~~~~--~~~~gs~iivTtR~~~~~~~--~---~~~~~~~l 73 (212)
....+..+|++|+++.. ..+..+...+. ....+..||.||........ . -....+.+
T Consensus 106 ~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~ 185 (285)
T 3h4m_A 106 AKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDILDPAILRPGRFDRIIEV 185 (285)
T ss_dssp HHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCGGGBCHHHHSTTSEEEEEEC
T ss_pred HHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCchhcCHHHcCCCcCCeEEEE
Confidence 33445689999999653 11222222221 12245677888875533211 0 12346889
Q ss_pred CCCChHHHHHHHHHhhcC
Q 047158 74 PRLCLGKSFQLFSWHAFR 91 (212)
Q Consensus 74 ~~l~~~~a~~Ll~~~~~~ 91 (212)
+.++.++-.+++......
T Consensus 186 ~~p~~~~r~~il~~~~~~ 203 (285)
T 3h4m_A 186 PAPDEKGRLEILKIHTRK 203 (285)
T ss_dssp CCCCHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHhc
Confidence 999999999999877643
No 28
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=83.16 E-value=1.4 Score=36.75 Aligned_cols=91 Identities=12% Similarity=0.083 Sum_probs=51.3
Q ss_pred CeEEEEecCCCChh----hHhhhhcccCC-CCCCcEEEEEcCChh---------HHhhcCCCceEeCCCCChHHHHHHHH
Q 047158 21 RRVFVVLDNLDHID----QLKPLAGENKW-FGSGSRIIITNRNEH---------LLKVFEVDGVCTVPRLCLGKSFQLFS 86 (212)
Q Consensus 21 kr~LlvlDdv~~~~----~~~~l~~~~~~-~~~gs~iivTtR~~~---------~~~~~~~~~~~~l~~l~~~~a~~Ll~ 86 (212)
+.-+|++|+++... ..+.+...+.. ...|..||+||.+.. +...+....++.+++++.++-.+++.
T Consensus 194 ~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL~ 273 (440)
T 2z4s_A 194 KVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIAR 273 (440)
T ss_dssp TCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHHH
T ss_pred CCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHHHH
Confidence 66799999996432 22223222211 124667888887632 22222234578999999999999998
Q ss_pred HhhcCCC-CCChhHHHHHHHHHHHhCCCC
Q 047158 87 WHAFRKD-KPPQRFMKLSRELLRCAEGLP 114 (212)
Q Consensus 87 ~~~~~~~-~~~~~~~~~~~~i~~~c~glP 114 (212)
..+.... ..++ +....|++.++|.+
T Consensus 274 ~~~~~~~~~i~~---e~l~~la~~~~gn~ 299 (440)
T 2z4s_A 274 KMLEIEHGELPE---EVLNFVAENVDDNL 299 (440)
T ss_dssp HHHHHHTCCCCT---THHHHHHHHCCSCH
T ss_pred HHHHHcCCCCCH---HHHHHHHHhcCCCH
Confidence 7663211 1111 22445566666644
No 29
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=82.06 E-value=1.2 Score=33.02 Aligned_cols=52 Identities=23% Similarity=0.169 Sum_probs=29.9
Q ss_pred HHHHHHHHHhccCeE-EEEecCCCCh-----hhHhhhhcccCCCCCCcEEEEEcCChh
Q 047158 9 RGLNMMSSRLLHRRV-FVVLDNLDHI-----DQLKPLAGENKWFGSGSRIIITNRNEH 60 (212)
Q Consensus 9 ~~~~~l~~~L~~kr~-LlvlDdv~~~-----~~~~~l~~~~~~~~~gs~iivTtR~~~ 60 (212)
...+..++.+.+.+| |||||.+... -..+.+...+.....+..||+|+|+..
T Consensus 107 ~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap 164 (196)
T 1g5t_A 107 AVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCH 164 (196)
T ss_dssp HHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCC
T ss_pred HHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCc
Confidence 344556666665554 9999998432 112222222222334567999999864
No 30
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=81.03 E-value=19 Score=28.68 Aligned_cols=96 Identities=13% Similarity=0.043 Sum_probs=53.6
Q ss_pred ccCeEEEEecCCCChh-------------hHhhhhcc---cCCCCCCcEEEEEcCChhHHhh---cCCCceEeCCCCChH
Q 047158 19 LHRRVFVVLDNLDHID-------------QLKPLAGE---NKWFGSGSRIIITNRNEHLLKV---FEVDGVCTVPRLCLG 79 (212)
Q Consensus 19 ~~kr~LlvlDdv~~~~-------------~~~~l~~~---~~~~~~gs~iivTtR~~~~~~~---~~~~~~~~l~~l~~~ 79 (212)
..+..+|++|+++... ....++.. +.....+..||.||........ -.....+.++..+.+
T Consensus 141 ~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~ 220 (355)
T 2qp9_X 141 ENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLA 220 (355)
T ss_dssp HTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEEEEEEESCGGGSCHHHHHTCCEEEECCCCCHH
T ss_pred HcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeEEEeecCCcccCCHHHHcccCEEEEeCCcCHH
Confidence 3567899999997532 12222221 2112345556667754421110 023567889999999
Q ss_pred HHHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCCCch
Q 047158 80 KSFQLFSWHAFRKDKPPQRFMKLSRELLRCAEGLPLE 116 (212)
Q Consensus 80 ~a~~Ll~~~~~~~~~~~~~~~~~~~~i~~~c~glPLa 116 (212)
+-.+++............ ......|++.+.|..-+
T Consensus 221 ~r~~il~~~l~~~~~~~~--~~~l~~la~~t~G~sg~ 255 (355)
T 2qp9_X 221 ARTTMFEINVGDTPSVLT--KEDYRTLGAMTEGYSGS 255 (355)
T ss_dssp HHHHHHHHHHTTSCBCCC--HHHHHHHHHHTTTCCHH
T ss_pred HHHHHHHHHHhhCCCCCC--HHHHHHHHHHcCCCCHH
Confidence 999999877643321111 23456778888876543
No 31
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=80.97 E-value=16 Score=28.70 Aligned_cols=96 Identities=13% Similarity=0.050 Sum_probs=53.8
Q ss_pred ccCeEEEEecCCCChh-------------hHhhhhccc---CCCCCCcEEEEEcCChhHHhh---cCCCceEeCCCCChH
Q 047158 19 LHRRVFVVLDNLDHID-------------QLKPLAGEN---KWFGSGSRIIITNRNEHLLKV---FEVDGVCTVPRLCLG 79 (212)
Q Consensus 19 ~~kr~LlvlDdv~~~~-------------~~~~l~~~~---~~~~~gs~iivTtR~~~~~~~---~~~~~~~~l~~l~~~ 79 (212)
..+..+|++|+++... ....++..+ .....+..||.||........ --....+.++..+.+
T Consensus 103 ~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~ 182 (322)
T 1xwi_A 103 ENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPH 182 (322)
T ss_dssp HTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESCTTTSCHHHHHTCCEEEECCCCCHH
T ss_pred hcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEEEEecCCcccCCHHHHhhcCeEEEeCCcCHH
Confidence 4567899999997541 112222221 112234556656654321110 023457889999999
Q ss_pred HHHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCCCch
Q 047158 80 KSFQLFSWHAFRKDKPPQRFMKLSRELLRCAEGLPLE 116 (212)
Q Consensus 80 ~a~~Ll~~~~~~~~~~~~~~~~~~~~i~~~c~glPLa 116 (212)
+-.+++........... .......|++.+.|..-+
T Consensus 183 ~r~~il~~~l~~~~~~l--~~~~l~~la~~t~G~sga 217 (322)
T 1xwi_A 183 ARAAMFKLHLGTTQNSL--TEADFRELGRKTDGYSGA 217 (322)
T ss_dssp HHHHHHHHHHTTCCBCC--CHHHHHHHHHTCTTCCHH
T ss_pred HHHHHHHHHHhcCCCCC--CHHHHHHHHHHcCCCCHH
Confidence 99999987663322111 123456778888887554
No 32
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=80.74 E-value=1.3 Score=34.94 Aligned_cols=69 Identities=14% Similarity=0.089 Sum_probs=47.4
Q ss_pred cCeEEEEecCCCC--hhhHhhhhcccCCCCCCcEEEEEcCChh-HHhhcCCCceEeCCCCChHHHHHHHHHhh
Q 047158 20 HRRVFVVLDNLDH--IDQLKPLAGENKWFGSGSRIIITNRNEH-LLKVFEVDGVCTVPRLCLGKSFQLFSWHA 89 (212)
Q Consensus 20 ~kr~LlvlDdv~~--~~~~~~l~~~~~~~~~gs~iivTtR~~~-~~~~~~~~~~~~l~~l~~~~a~~Ll~~~~ 89 (212)
+++-++|+|+++. ....+.|+..+....+.+.+|++|.++. +...+-.- .+++.+++.++..+.+....
T Consensus 81 ~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR-~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 81 YTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR-VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp SSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-SEEEECCCCHHHHHHHHHHH
T ss_pred CCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce-eEeCCCCCHHHHHHHHHHHh
Confidence 3467899999985 3455666665555556777777775542 33333234 89999999999999887765
No 33
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=79.09 E-value=5.5 Score=31.37 Aligned_cols=94 Identities=10% Similarity=0.062 Sum_probs=56.4
Q ss_pred CeEEEEecCCCCh--hhHhhhhcccCCCCCCcEEEEEcCChhH-Hhhc-CCCceEeCCCCChHHHHHHHHHhhcCCCCCC
Q 047158 21 RRVFVVLDNLDHI--DQLKPLAGENKWFGSGSRIIITNRNEHL-LKVF-EVDGVCTVPRLCLGKSFQLFSWHAFRKDKPP 96 (212)
Q Consensus 21 kr~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~iivTtR~~~~-~~~~-~~~~~~~l~~l~~~~a~~Ll~~~~~~~~~~~ 96 (212)
++-+|++|+++.. .....+...+.......++|++|..... ...+ .-...+.+.+++.++..+.+...+.......
T Consensus 133 ~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~l~~~~~~~~~~i 212 (353)
T 1sxj_D 133 PYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQCSKFRFKALDASNAIDRLRFISEQENVKC 212 (353)
T ss_dssp SCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHSEEEECCCCCHHHHHHHHHHHHHTTTCCC
T ss_pred CceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhccCceEEeCCCCHHHHHHHHHHHHHHhCCCC
Confidence 4569999998743 3344444433333345667777754431 1111 1123689999999999998887653322111
Q ss_pred hhHHHHHHHHHHHhCCCCch
Q 047158 97 QRFMKLSRELLRCAEGLPLE 116 (212)
Q Consensus 97 ~~~~~~~~~i~~~c~glPLa 116 (212)
..+....|++.++|.|-.
T Consensus 213 --~~~~l~~l~~~~~G~~r~ 230 (353)
T 1sxj_D 213 --DDGVLERILDISAGDLRR 230 (353)
T ss_dssp --CHHHHHHHHHHTSSCHHH
T ss_pred --CHHHHHHHHHHcCCCHHH
Confidence 134567788888887764
No 34
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=76.93 E-value=4.3 Score=31.79 Aligned_cols=63 Identities=21% Similarity=0.190 Sum_probs=37.1
Q ss_pred CeEEEEecCCCChh---hHhhhhcccCCCCCCcEEEEEcCChhHHh-hc-CCCceEeCCCCChHHHHH
Q 047158 21 RRVFVVLDNLDHID---QLKPLAGENKWFGSGSRIIITNRNEHLLK-VF-EVDGVCTVPRLCLGKSFQ 83 (212)
Q Consensus 21 kr~LlvlDdv~~~~---~~~~l~~~~~~~~~gs~iivTtR~~~~~~-~~-~~~~~~~l~~l~~~~a~~ 83 (212)
++-++++|+++... ..+.+...+.....++.+|+||....... .+ .--..+.+++++.++-.+
T Consensus 105 ~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR~~~i~~~~~~~~e~~~ 172 (324)
T 3u61_B 105 RQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRCRVITFGQPTDEDKIE 172 (324)
T ss_dssp CEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHHSEEEECCCCCHHHHHH
T ss_pred CCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhhCcEEEeCCCCHHHHHH
Confidence 67899999998753 34444433332234567888876543110 00 012468999999887433
No 35
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=73.72 E-value=32 Score=28.36 Aligned_cols=96 Identities=11% Similarity=0.056 Sum_probs=55.2
Q ss_pred ccCeEEEEecCCCCh-------------hhHhhhhcccCC---CCCCcEEEEEcCChhHHhh---cCCCceEeCCCCChH
Q 047158 19 LHRRVFVVLDNLDHI-------------DQLKPLAGENKW---FGSGSRIIITNRNEHLLKV---FEVDGVCTVPRLCLG 79 (212)
Q Consensus 19 ~~kr~LlvlDdv~~~-------------~~~~~l~~~~~~---~~~gs~iivTtR~~~~~~~---~~~~~~~~l~~l~~~ 79 (212)
..+..+|++|+++.. .....++..+.. ...+..||.||........ --....+.++..+.+
T Consensus 225 ~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~ 304 (444)
T 2zan_A 225 ENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAH 304 (444)
T ss_dssp HSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCEEEEEESCGGGSCHHHHTTCCEEEECCCCCHH
T ss_pred HcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEEEEecCCCccccCHHHHhhcceEEEeCCcCHH
Confidence 356789999999854 112333333322 1245566667755432111 013457888899999
Q ss_pred HHHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCCCch
Q 047158 80 KSFQLFSWHAFRKDKPPQRFMKLSRELLRCAEGLPLE 116 (212)
Q Consensus 80 ~a~~Ll~~~~~~~~~~~~~~~~~~~~i~~~c~glPLa 116 (212)
+-.++|........... .......|++.+.|..-+
T Consensus 305 ~r~~il~~~l~~~~~~l--~~~~l~~la~~t~G~sga 339 (444)
T 2zan_A 305 ARAAMFRLHLGSTQNSL--TEADFQELGRKTDGYSGA 339 (444)
T ss_dssp HHHHHHHHHHTTSCEEC--CHHHHHHHHHHTTTCCHH
T ss_pred HHHHHHHHHHhcCCCCC--CHHHHHHHHHHcCCCCHH
Confidence 99999887763322111 123456788888886654
No 36
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=72.58 E-value=29 Score=27.87 Aligned_cols=95 Identities=11% Similarity=0.002 Sum_probs=49.8
Q ss_pred ccCeEEEEecCCCCh-------------hhHhhhhc---ccCC-CCCCcEEEEEcCChhHHhh---cCCCceEeCCCCCh
Q 047158 19 LHRRVFVVLDNLDHI-------------DQLKPLAG---ENKW-FGSGSRIIITNRNEHLLKV---FEVDGVCTVPRLCL 78 (212)
Q Consensus 19 ~~kr~LlvlDdv~~~-------------~~~~~l~~---~~~~-~~~gs~iivTtR~~~~~~~---~~~~~~~~l~~l~~ 78 (212)
.....+|+||+++.. .....+.. .... ......||.||........ --....+.++..+.
T Consensus 205 ~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~ 284 (389)
T 3vfd_A 205 ELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNE 284 (389)
T ss_dssp HSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCH
T ss_pred hcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCCEEEEEecCCchhcCHHHHcCcceEEEcCCcCH
Confidence 345679999999643 01112211 1111 1223455656654322111 01345688999999
Q ss_pred HHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCCCc
Q 047158 79 GKSFQLFSWHAFRKDKPPQRFMKLSRELLRCAEGLPL 115 (212)
Q Consensus 79 ~~a~~Ll~~~~~~~~~~~~~~~~~~~~i~~~c~glPL 115 (212)
++-.+++...+........ ......+++.+.|..-
T Consensus 285 ~~r~~il~~~~~~~~~~l~--~~~~~~la~~~~g~~~ 319 (389)
T 3vfd_A 285 ETRLLLLKNLLCKQGSPLT--QKELAQLARMTDGYSG 319 (389)
T ss_dssp HHHHHHHHHHHTTSCCCSC--HHHHHHHHHHTTTCCH
T ss_pred HHHHHHHHHHHHhcCCCCC--HHHHHHHHHHcCCCCH
Confidence 9999999877643222111 2345677777777543
No 37
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=69.75 E-value=19 Score=29.94 Aligned_cols=96 Identities=15% Similarity=0.071 Sum_probs=51.6
Q ss_pred ccCeEEEEecCCCCh--hhHhhhhcccCCCCCCcEEEEEcCChhH---HhhcCCCceEeCCCCChHHHHHHHHHhhcCCC
Q 047158 19 LHRRVFVVLDNLDHI--DQLKPLAGENKWFGSGSRIIITNRNEHL---LKVFEVDGVCTVPRLCLGKSFQLFSWHAFRKD 93 (212)
Q Consensus 19 ~~kr~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~iivTtR~~~~---~~~~~~~~~~~l~~l~~~~a~~Ll~~~~~~~~ 93 (212)
.+++.+|++|+++.. .+.+.|+..+.. +.-.-|..||.+... .....-..++.+.+++.++-.+++........
T Consensus 104 ~~~~~iLfIDEI~~l~~~~q~~LL~~le~-~~v~lI~att~n~~~~l~~aL~sR~~v~~l~~l~~edi~~il~~~l~~~~ 182 (447)
T 3pvs_A 104 AGRRTILFVDEVHRFNKSQQDAFLPHIED-GTITFIGATTENPSFELNSALLSRARVYLLKSLSTEDIEQVLTQAMEDKT 182 (447)
T ss_dssp TTCCEEEEEETTTCC------CCHHHHHT-TSCEEEEEESSCGGGSSCHHHHTTEEEEECCCCCHHHHHHHHHHHHHCTT
T ss_pred cCCCcEEEEeChhhhCHHHHHHHHHHHhc-CceEEEecCCCCcccccCHHHhCceeEEeeCCcCHHHHHHHHHHHHHHHh
Confidence 356889999999854 334455544442 222233345555431 11111234788999999999999887663311
Q ss_pred -----CCChhHHHHHHHHHHHhCCCCc
Q 047158 94 -----KPPQRFMKLSRELLRCAEGLPL 115 (212)
Q Consensus 94 -----~~~~~~~~~~~~i~~~c~glPL 115 (212)
....-..+....+++.++|.+-
T Consensus 183 ~~~~~~~~~i~~~al~~L~~~~~Gd~R 209 (447)
T 3pvs_A 183 RGYGGQDIVLPDETRRAIAELVNGDAR 209 (447)
T ss_dssp TSSTTSSEECCHHHHHHHHHHHCSCHH
T ss_pred hhhccccCcCCHHHHHHHHHHCCCCHH
Confidence 1111123345566666666543
No 38
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=69.68 E-value=13 Score=31.49 Aligned_cols=90 Identities=13% Similarity=0.108 Sum_probs=49.5
Q ss_pred cCeEEEEecCCCChh-----hHhhhhcccCCCCCCcEEEEEcCChh---HHhhcCCCceEeCCCCChHHHHHHHHHhhcC
Q 047158 20 HRRVFVVLDNLDHID-----QLKPLAGENKWFGSGSRIIITNRNEH---LLKVFEVDGVCTVPRLCLGKSFQLFSWHAFR 91 (212)
Q Consensus 20 ~kr~LlvlDdv~~~~-----~~~~l~~~~~~~~~gs~iivTtR~~~---~~~~~~~~~~~~l~~l~~~~a~~Ll~~~~~~ 91 (212)
+++.+|++|+++... .+..+...+.. .+..||+++.+.. +.........+.+++++.++..+++...+..
T Consensus 147 ~~~~vliIDEid~l~~~~~~~l~~L~~~l~~--~~~~iIli~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~ 224 (516)
T 1sxj_A 147 GKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK--TSTPLILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIR 224 (516)
T ss_dssp TTSEEEEECSGGGCCTTSTTHHHHHHHHHHH--CSSCEEEEESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCccchhhHHHHHHHHHHHHh--cCCCEEEEEcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHH
Confidence 567899999997431 12333322221 1233555544322 2221122456899999999999988776532
Q ss_pred CC-CCChhHHHHHHHHHHHhCCCC
Q 047158 92 KD-KPPQRFMKLSRELLRCAEGLP 114 (212)
Q Consensus 92 ~~-~~~~~~~~~~~~i~~~c~glP 114 (212)
.. ...+ +....|++.++|-+
T Consensus 225 ~~~~i~~---~~l~~la~~s~Gdi 245 (516)
T 1sxj_A 225 EKFKLDP---NVIDRLIQTTRGDI 245 (516)
T ss_dssp HTCCCCT---THHHHHHHHTTTCH
T ss_pred cCCCCCH---HHHHHHHHHcCCcH
Confidence 11 1221 23566777787743
No 39
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=67.34 E-value=7 Score=30.21 Aligned_cols=70 Identities=7% Similarity=0.010 Sum_probs=43.8
Q ss_pred CeEEEEecCCC-----------ChhhHhhhhcccCCCCCCcEEEEEcCChhHHhh--cC------CCceEeCCCCChHHH
Q 047158 21 RRVFVVLDNLD-----------HIDQLKPLAGENKWFGSGSRIIITNRNEHLLKV--FE------VDGVCTVPRLCLGKS 81 (212)
Q Consensus 21 kr~LlvlDdv~-----------~~~~~~~l~~~~~~~~~gs~iivTtR~~~~~~~--~~------~~~~~~l~~l~~~~a 81 (212)
+..+|++|+++ .......|...+.....+..||.||........ .. ....+.+++++.++-
T Consensus 130 ~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~ 209 (309)
T 3syl_A 130 MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILAGYADRMENFFQSNPGFRSRIAHHIEFPDYSDEEL 209 (309)
T ss_dssp TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEEECHHHHHHHHHHSTTHHHHEEEEEEECCCCHHHH
T ss_pred CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEeCChHHHHHHHhhCHHHHHhCCeEEEcCCcCHHHH
Confidence 35699999998 333344555444434456677777754321111 01 236789999999999
Q ss_pred HHHHHHhhc
Q 047158 82 FQLFSWHAF 90 (212)
Q Consensus 82 ~~Ll~~~~~ 90 (212)
.+++...+.
T Consensus 210 ~~il~~~l~ 218 (309)
T 3syl_A 210 FEIAGHMLD 218 (309)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999887663
No 40
>3i71_A Ethanolamine utilization protein EUTK; helix-turn-helix, unknown function; HET: FLC; 2.10A {Escherichia coli}
Probab=65.47 E-value=9.5 Score=21.99 Aligned_cols=53 Identities=9% Similarity=-0.017 Sum_probs=39.4
Q ss_pred hHHhhhhccCCCCCHHHHHHhhhhcCCcchhhHHHHhhccCceecCCCcEEecH
Q 047158 145 NVFMDIAHLFVGMDKDYVLKILQGCGFSSEIVFFVLTQRCLIVIDEDNRLKMHD 198 (212)
Q Consensus 145 ~~~~~la~f~~~~~~~~l~~~~~~~~~~~~~~l~~L~~~sll~~~~~~~~~mH~ 198 (212)
.++..++.+++|.+...+.....-.--.+...++.|...+-+... ..+|+|-+
T Consensus 7 aLLall~s~~QGMTaGEVAA~f~w~Le~ar~aLeqLf~~G~LRKR-sSRYrlkp 59 (68)
T 3i71_A 7 ELLALLTSVRQGMTAGEVAAHFGWPLEKARNALEQLFSAGTLRKR-SSRYRLKP 59 (68)
T ss_dssp HHHHHHHHCTTCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE-CCEEEECC
T ss_pred HHHHHHHHHhccccHHHHHHHhCCcHHHHHHHHHHHHhcchhhhh-ccccccCc
Confidence 556788899999988888776544333456689999999888876 56787754
No 41
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=64.32 E-value=28 Score=27.67 Aligned_cols=94 Identities=4% Similarity=-0.012 Sum_probs=50.4
Q ss_pred ccCeEEEEecCCCCh-------------hhHhhhhcccC----CCCCCcEEEEEcCChhHH-hhc--CCCceEeCCCCCh
Q 047158 19 LHRRVFVVLDNLDHI-------------DQLKPLAGENK----WFGSGSRIIITNRNEHLL-KVF--EVDGVCTVPRLCL 78 (212)
Q Consensus 19 ~~kr~LlvlDdv~~~-------------~~~~~l~~~~~----~~~~gs~iivTtR~~~~~-~~~--~~~~~~~l~~l~~ 78 (212)
..+..+|++|+++.. .....++..+. ....+..||.||...... ..+ -....+.++..+.
T Consensus 174 ~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~ 253 (357)
T 3d8b_A 174 CQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEA 253 (357)
T ss_dssp HTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGGGBCHHHHTTCCEEEECCCCCH
T ss_pred hcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCEEEEEecCChhhCCHHHHhhCceEEEeCCcCH
Confidence 356789999999532 11222222221 112344566566543211 110 1345678999999
Q ss_pred HHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCCC
Q 047158 79 GKSFQLFSWHAFRKDKPPQRFMKLSRELLRCAEGLP 114 (212)
Q Consensus 79 ~~a~~Ll~~~~~~~~~~~~~~~~~~~~i~~~c~glP 114 (212)
++-.+++...+........ ......+++.+.|+.
T Consensus 254 ~~r~~il~~~~~~~~~~l~--~~~l~~la~~t~G~s 287 (357)
T 3d8b_A 254 SARKQIVINLMSKEQCCLS--EEEIEQIVQQSDAFS 287 (357)
T ss_dssp HHHHHHHHHHHHTSCBCCC--HHHHHHHHHHTTTCC
T ss_pred HHHHHHHHHHHhhcCCCcc--HHHHHHHHHHcCCCC
Confidence 9988888776533221111 234566777777754
No 42
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=62.62 E-value=21 Score=28.02 Aligned_cols=92 Identities=11% Similarity=0.039 Sum_probs=52.2
Q ss_pred CeEEEEecCCCC--hhhHhhhhcccCCCCCCcEEEEEcCChhH-Hhhc-CCCceEeCCCCChHHHHHHHHHhhcCCC-CC
Q 047158 21 RRVFVVLDNLDH--IDQLKPLAGENKWFGSGSRIIITNRNEHL-LKVF-EVDGVCTVPRLCLGKSFQLFSWHAFRKD-KP 95 (212)
Q Consensus 21 kr~LlvlDdv~~--~~~~~~l~~~~~~~~~gs~iivTtR~~~~-~~~~-~~~~~~~l~~l~~~~a~~Ll~~~~~~~~-~~ 95 (212)
.+-++|+|+++. ....+.+...+......+.+|++|..... ...+ .-...+.+.+++.++..+.+...+-... ..
T Consensus 110 ~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR~~~~~~~~l~~~~~~~~l~~~~~~~~~~i 189 (340)
T 1sxj_C 110 GFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCTRFRFQPLPQEAIERRIANVLVHEKLKL 189 (340)
T ss_dssp SCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHTTTCCB
T ss_pred CceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhhceeEeccCCCHHHHHHHHHHHHHHcCCCC
Confidence 467899999964 23334443333323345667777754421 1111 1123688999999998888876552211 11
Q ss_pred ChhHHHHHHHHHHHhCCCCc
Q 047158 96 PQRFMKLSRELLRCAEGLPL 115 (212)
Q Consensus 96 ~~~~~~~~~~i~~~c~glPL 115 (212)
. ......+++.++|-+-
T Consensus 190 ~---~~~~~~i~~~s~G~~r 206 (340)
T 1sxj_C 190 S---PNAEKALIELSNGDMR 206 (340)
T ss_dssp C---HHHHHHHHHHHTTCHH
T ss_pred C---HHHHHHHHHHcCCCHH
Confidence 2 2345667777777654
No 43
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=62.19 E-value=3.1 Score=29.18 Aligned_cols=64 Identities=8% Similarity=0.022 Sum_probs=34.2
Q ss_pred cCeEEEEecCCCChh---------h-HhhhhcccCCCCCCcEEEEEcCChhHHhhc-------CCCceEeCCCCChHHHH
Q 047158 20 HRRVFVVLDNLDHID---------Q-LKPLAGENKWFGSGSRIIITNRNEHLLKVF-------EVDGVCTVPRLCLGKSF 82 (212)
Q Consensus 20 ~kr~LlvlDdv~~~~---------~-~~~l~~~~~~~~~gs~iivTtR~~~~~~~~-------~~~~~~~l~~l~~~~a~ 82 (212)
+++.+|++|+++... . ...+..... . .+..+|.||......... .--..+.+.+++.++..
T Consensus 114 ~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~-~-~~~~~i~~~~~~~~~~~~~~~~~l~~r~~~i~~~~p~~~~~~ 191 (195)
T 1jbk_A 114 EGNVILFIDELHTMVGAGKADGAMDAGNMLKPALA-R-GELHCVGATTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTI 191 (195)
T ss_dssp TTTEEEEEETGGGGTT------CCCCHHHHHHHHH-T-TSCCEEEEECHHHHHHHTTTCHHHHTTEEEEECCCCCHHHHH
T ss_pred CCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhc-c-CCeEEEEeCCHHHHHHHHhcCHHHHHHhceeecCCCCHHHHH
Confidence 457899999997542 1 122222111 2 234566666554422111 11125788888888776
Q ss_pred HHH
Q 047158 83 QLF 85 (212)
Q Consensus 83 ~Ll 85 (212)
+++
T Consensus 192 ~il 194 (195)
T 1jbk_A 192 AIL 194 (195)
T ss_dssp TTC
T ss_pred HHh
Confidence 654
No 44
>3mq0_A Transcriptional repressor of the blcabc operon; helix-turn-helix, GAF fold, transcription repressor; 1.79A {Agrobacterium tumefaciens}
Probab=61.91 E-value=19 Score=27.76 Aligned_cols=55 Identities=13% Similarity=0.065 Sum_probs=42.2
Q ss_pred CCCCCHHHHHHhhhhcCCcchhhHHHHhhccCceecCCCcEEecHHHHHHHHHHH
Q 047158 154 FVGMDKDYVLKILQGCGFSSEIVFFVLTQRCLIVIDEDNRLKMHDLIRDMKEKLF 208 (212)
Q Consensus 154 ~~~~~~~~l~~~~~~~~~~~~~~l~~L~~~sll~~~~~~~~~mH~lv~~~a~~~~ 208 (212)
+.+.+...+.+......-.....+..|.+.+++..+++++|++-.-+..++....
T Consensus 43 ~~~ltl~eia~~lgl~ksTv~RlL~tL~~~G~v~~~~~~~Y~LG~~~~~lg~~~~ 97 (275)
T 3mq0_A 43 PRDLTAAELTRFLDLPKSSAHGLLAVMTELDLLARSADGTLRIGPHSLRWANGFL 97 (275)
T ss_dssp SSCEEHHHHHHHHTCC--CHHHHHHHHHHTTSEEECTTSEEEECTHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEECCCCcEEehHHHHHHHHHHH
Confidence 4457888888877776667788899999999999987788998887777766543
No 45
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=61.54 E-value=24 Score=28.56 Aligned_cols=55 Identities=11% Similarity=0.097 Sum_probs=31.7
Q ss_pred HhccCe--EEEEecCCCCh---hhHhhhhcccCCCCCCcEEEEEcCChhHHhhcCCCceEeC
Q 047158 17 RLLHRR--VFVVLDNLDHI---DQLKPLAGENKWFGSGSRIIITNRNEHLLKVFEVDGVCTV 73 (212)
Q Consensus 17 ~L~~kr--~LlvlDdv~~~---~~~~~l~~~~~~~~~gs~iivTtR~~~~~~~~~~~~~~~l 73 (212)
.|..+. -+|+||++... .....+...+.....|..||++|.+..++.. +..++.+
T Consensus 309 ~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~itH~~~~~~~--~d~i~~l 368 (415)
T 4aby_A 309 STVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAAR--AHHHYKV 368 (415)
T ss_dssp HHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHTT--CSEEEEE
T ss_pred HHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHhh--cCeEEEE
Confidence 444455 78999999743 2223333222222246779999999887654 3444444
No 46
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=59.26 E-value=16 Score=28.96 Aligned_cols=83 Identities=11% Similarity=0.016 Sum_probs=44.1
Q ss_pred EEEEecCCCCh--hhHhhhhcccCCCCCCcEEEEEcCC-----------------hhHHhhcCCCceEeCCCCChHHHHH
Q 047158 23 VFVVLDNLDHI--DQLKPLAGENKWFGSGSRIIITNRN-----------------EHLLKVFEVDGVCTVPRLCLGKSFQ 83 (212)
Q Consensus 23 ~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~iivTtR~-----------------~~~~~~~~~~~~~~l~~l~~~~a~~ 83 (212)
.+|++|+++.. +....+...+...... .++++|.. +.+... -..+.+++++.++..+
T Consensus 191 ~vl~IDEi~~l~~~~~~~L~~~le~~~~~-~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR---~~~i~~~~~~~~e~~~ 266 (368)
T 3uk6_A 191 GVLFIDEVHMLDIESFSFLNRALESDMAP-VLIMATNRGITRIRGTSYQSPHGIPIDLLDR---LLIVSTTPYSEKDTKQ 266 (368)
T ss_dssp CEEEEESGGGSBHHHHHHHHHHTTCTTCC-EEEEEESCSEEECBTSSCEEETTCCHHHHTT---EEEEEECCCCHHHHHH
T ss_pred ceEEEhhccccChHHHHHHHHHhhCcCCC-eeeeecccceeeeeccCCCCcccCCHHHHhh---ccEEEecCCCHHHHHH
Confidence 49999999853 3344444444333323 34444421 111111 2347899999999999
Q ss_pred HHHHhhcCCCCCChhHHHHHHHHHHHhC
Q 047158 84 LFSWHAFRKDKPPQRFMKLSRELLRCAE 111 (212)
Q Consensus 84 Ll~~~~~~~~~~~~~~~~~~~~i~~~c~ 111 (212)
++...+....... ..+....+++.+.
T Consensus 267 il~~~~~~~~~~~--~~~~l~~l~~~~~ 292 (368)
T 3uk6_A 267 ILRIRCEEEDVEM--SEDAYTVLTRIGL 292 (368)
T ss_dssp HHHHHHHHTTCCB--CHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCC--CHHHHHHHHHHhc
Confidence 9886653322111 1233455555554
No 47
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=55.91 E-value=16 Score=28.45 Aligned_cols=69 Identities=12% Similarity=0.097 Sum_probs=39.8
Q ss_pred CeEEEEecCCCChh----hHhhhhcccCC-CCCCcEEEEEcCChh---------HHhhcCCCceEeCCCCChHHHHHHHH
Q 047158 21 RRVFVVLDNLDHID----QLKPLAGENKW-FGSGSRIIITNRNEH---------LLKVFEVDGVCTVPRLCLGKSFQLFS 86 (212)
Q Consensus 21 kr~LlvlDdv~~~~----~~~~l~~~~~~-~~~gs~iivTtR~~~---------~~~~~~~~~~~~l~~l~~~~a~~Ll~ 86 (212)
+.-+|++|++.... ..+.+...+.. ...|..||+||.+.. +...+....++.+++ +.++-.+++.
T Consensus 98 ~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~~~i~l~~-~~~e~~~il~ 176 (324)
T 1l8q_A 98 SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEIEL-DNKTRFKIIK 176 (324)
T ss_dssp TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEECCC-CHHHHHHHHH
T ss_pred CCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccCceEEEeCC-CHHHHHHHHH
Confidence 36799999996532 11222221110 123556788775331 111222335689999 9999999998
Q ss_pred Hhhc
Q 047158 87 WHAF 90 (212)
Q Consensus 87 ~~~~ 90 (212)
..+.
T Consensus 177 ~~~~ 180 (324)
T 1l8q_A 177 EKLK 180 (324)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7763
No 48
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=53.37 E-value=71 Score=24.18 Aligned_cols=96 Identities=10% Similarity=0.025 Sum_probs=51.0
Q ss_pred ccCeEEEEecCCCChh-------------hHhhhh---cccCCC--CCCcEEEEEcCChhHHhh-c--CCCceEeCCCCC
Q 047158 19 LHRRVFVVLDNLDHID-------------QLKPLA---GENKWF--GSGSRIIITNRNEHLLKV-F--EVDGVCTVPRLC 77 (212)
Q Consensus 19 ~~kr~LlvlDdv~~~~-------------~~~~l~---~~~~~~--~~gs~iivTtR~~~~~~~-~--~~~~~~~l~~l~ 77 (212)
..+..+|++|+++... ....+. ...+.. +.+..||.||........ + .....+.++..+
T Consensus 111 ~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l~~R~~~~i~~~~p~ 190 (297)
T 3b9p_A 111 HMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALRRFTKRVYVSLPD 190 (297)
T ss_dssp HTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHHHHHCCEEEECCCCC
T ss_pred HcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHHHhhCCeEEEeCCcC
Confidence 4567899999996431 111121 112211 234566777765431110 0 134567888888
Q ss_pred hHHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCCCch
Q 047158 78 LGKSFQLFSWHAFRKDKPPQRFMKLSRELLRCAEGLPLE 116 (212)
Q Consensus 78 ~~~a~~Ll~~~~~~~~~~~~~~~~~~~~i~~~c~glPLa 116 (212)
.++-.+++........... .......+++.+.|.+-+
T Consensus 191 ~~~r~~il~~~~~~~~~~~--~~~~~~~la~~~~g~~~~ 227 (297)
T 3b9p_A 191 EQTRELLLNRLLQKQGSPL--DTEALRRLAKITDGYSGS 227 (297)
T ss_dssp HHHHHHHHHHHHGGGSCCS--CHHHHHHHHHHTTTCCHH
T ss_pred HHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHcCCCCHH
Confidence 8888888876653222111 123456777778887653
No 49
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=49.93 E-value=33 Score=28.33 Aligned_cols=88 Identities=9% Similarity=-0.040 Sum_probs=47.1
Q ss_pred EEEecCCCC--hhhHhhhhcccCCCCCCcEEE-EE---------cC-C--h-hH-HhhcCCCceEeCCCCChHHHHHHHH
Q 047158 24 FVVLDNLDH--IDQLKPLAGENKWFGSGSRII-IT---------NR-N--E-HL-LKVFEVDGVCTVPRLCLGKSFQLFS 86 (212)
Q Consensus 24 LlvlDdv~~--~~~~~~l~~~~~~~~~gs~ii-vT---------tR-~--~-~~-~~~~~~~~~~~l~~l~~~~a~~Ll~ 86 (212)
.+++|++.. .+..+.|...+...... .+| .| |. . + .+ .....--..+.+.+++.++-.+++.
T Consensus 298 VliIDEa~~l~~~a~~aLlk~lEe~~~~-~~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR~~~~~~~~~~~~e~~~iL~ 376 (456)
T 2c9o_A 298 VLFVDEVHMLDIECFTYLHRALESSIAP-IVIFASNRGNCVIRGTEDITSPHGIPLDLLDRVMIIRTMLYTPQEMKQIIK 376 (456)
T ss_dssp EEEEESGGGCBHHHHHHHHHHTTSTTCC-EEEEEECCSEEECBTTSSCEEETTCCHHHHTTEEEEECCCCCHHHHHHHHH
T ss_pred EEEEechhhcCHHHHHHHHHHhhccCCC-EEEEecCCccccccccccccccccCChhHHhhcceeeCCCCCHHHHHHHHH
Confidence 899999974 44566666655544334 344 44 21 0 1 00 0011112247899999999999998
Q ss_pred HhhcC-CCCCChhHHHHHHHHHHHh-CCCCc
Q 047158 87 WHAFR-KDKPPQRFMKLSRELLRCA-EGLPL 115 (212)
Q Consensus 87 ~~~~~-~~~~~~~~~~~~~~i~~~c-~glPL 115 (212)
..+-. +.... .+....|++.+ .|.|-
T Consensus 377 ~~~~~~~~~~~---~~~~~~i~~~a~~g~~r 404 (456)
T 2c9o_A 377 IRAQTEGINIS---EEALNHLGEIGTKTTLR 404 (456)
T ss_dssp HHHHHHTCCBC---HHHHHHHHHHHHHSCHH
T ss_pred HHHHHhCCCCC---HHHHHHHHHHccCCCHH
Confidence 66521 11112 23345555555 55443
No 50
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=49.38 E-value=32 Score=25.81 Aligned_cols=52 Identities=8% Similarity=0.044 Sum_probs=37.1
Q ss_pred CCCHHHHHHhhhhcCCcchhhHHHHhhccCceecCCCcEEecHHHHHHHHHH
Q 047158 156 GMDKDYVLKILQGCGFSSEIVFFVLTQRCLIVIDEDNRLKMHDLIRDMKEKL 207 (212)
Q Consensus 156 ~~~~~~l~~~~~~~~~~~~~~l~~L~~~sll~~~~~~~~~mH~lv~~~a~~~ 207 (212)
+.+...+.+......-.....++.|.+.+++....+++|++-.-+..++...
T Consensus 23 ~~~~~ela~~~gl~~stv~r~l~~L~~~G~v~~~~~~~Y~lg~~~~~l~~~~ 74 (249)
T 1mkm_A 23 DVSVSEIAEKFNMSVSNAYKYMVVLEEKGFVLRKKDKRYVPGYKLIEYGSFV 74 (249)
T ss_dssp CBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECTTSCEEECTHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEECCCCcEEECHHHHHHHHHH
Confidence 4677777766655444456679999999999987567798877666555543
No 51
>2o0y_A Transcriptional regulator; ICLR-family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP}
Probab=42.25 E-value=40 Score=25.55 Aligned_cols=51 Identities=4% Similarity=-0.083 Sum_probs=37.4
Q ss_pred CCCHHHHHHhhhhcCCcchhhHHHHhhccCceecCCCcEEecHHHHHHHHH
Q 047158 156 GMDKDYVLKILQGCGFSSEIVFFVLTQRCLIVIDEDNRLKMHDLIRDMKEK 206 (212)
Q Consensus 156 ~~~~~~l~~~~~~~~~~~~~~l~~L~~~sll~~~~~~~~~mH~lv~~~a~~ 206 (212)
+.+...+.+...-..-.....++.|.+.+++....+++|++-.-+.+++..
T Consensus 38 ~~~~~eia~~~gl~kstv~r~l~tL~~~G~v~~~~~~~Y~lg~~~~~lg~~ 88 (260)
T 2o0y_A 38 TRSLKELVEGTKLPKTTVVRLVATMCARSVLTSRADGSYSLGPEMLRWVRL 88 (260)
T ss_dssp SBCHHHHHHHHCCCHHHHHHHHHHHHHTTSEEECTTSCEEECHHHHHHHHH
T ss_pred CcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEECCCCeEEecHHHHHHHHH
Confidence 477777776665444445667999999999998866689988776666654
No 52
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=41.43 E-value=31 Score=23.50 Aligned_cols=80 Identities=13% Similarity=0.132 Sum_probs=48.0
Q ss_pred HHHHHHHhhcCCCCchhhhHH--hhhhccCC----CCCHHHHHHhhhhcCCcchhhHHHHhhccCceec----CCC----
Q 047158 127 ILNKLRVSFDVLNDDEEKNVF--MDIAHLFV----GMDKDYVLKILQGCGFSSEIVFFVLTQRCLIVID----EDN---- 192 (212)
Q Consensus 127 v~~~l~~s~~~L~~~~~~~~~--~~la~f~~----~~~~~~l~~~~~~~~~~~~~~l~~L~~~sll~~~----~~~---- 192 (212)
+...+-..|..| .-...++. +.+..|-. +.+.+.++.....+.......++.|++++||... .+|
T Consensus 17 ip~~LL~~y~~L-gLs~~E~~lLl~L~~~~~~g~~~ps~~~LA~~~~~s~~~v~~~L~~L~~KGlI~i~~~~d~~g~~~~ 95 (135)
T 2v79_A 17 IPNLLLTHYKQL-GLNETELILLLKIKMHLEKGSYFPTPNQLQEGMSISVEECTNRLRMFIQKGFLFIEECEDQNGIKFE 95 (135)
T ss_dssp EEHHHHHHHHHH-TCCHHHHHHHHHHHHHHTTTCCSCCHHHHHTTSSSCHHHHHHHHHHHHHHTSCEEEEEECTTCCEEE
T ss_pred chHHHHHHHHHh-CCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEeEecCCCceEE
Confidence 334455556655 44444433 33333311 2566666666555444455579999999999973 234
Q ss_pred cEEecHHHHHHHHHH
Q 047158 193 RLKMHDLIRDMKEKL 207 (212)
Q Consensus 193 ~~~mH~lv~~~a~~~ 207 (212)
.|.+-+++..+..-+
T Consensus 96 ~ydL~pL~ekL~~~~ 110 (135)
T 2v79_A 96 KYSLQPLWGKLYEYI 110 (135)
T ss_dssp EEECHHHHHHHHHHH
T ss_pred EeeHHHHHHHHHHHH
Confidence 389999988776543
No 53
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=39.42 E-value=20 Score=20.95 Aligned_cols=52 Identities=8% Similarity=-0.076 Sum_probs=32.1
Q ss_pred hHHhhhhccCCCCCHHHHHHhhhhcCCcchhhHHHHhhccCceecCCCcEEe
Q 047158 145 NVFMDIAHLFVGMDKDYVLKILQGCGFSSEIVFFVLTQRCLIVIDEDNRLKM 196 (212)
Q Consensus 145 ~~~~~la~f~~~~~~~~l~~~~~~~~~~~~~~l~~L~~~sll~~~~~~~~~m 196 (212)
+.+..++--...++...+........-.....+..|.+.++|.....|.|++
T Consensus 14 ~IL~~L~~~~~~~s~~eLA~~lglsr~tv~~~l~~L~~~G~I~~~~~G~y~l 65 (67)
T 2heo_A 14 KILQVLSDDGGPVAIFQLVKKCQVPKKTLNQVLYRLKKEDRVSSPSPKYWSI 65 (67)
T ss_dssp HHHHHHHHHCSCEEHHHHHHHHCSCHHHHHHHHHHHHHTTSEEEEETTEEEE
T ss_pred HHHHHHHHcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEecCCCceEee
Confidence 3444444322336666666665554444555799999999988765676764
No 54
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=38.44 E-value=1.3e+02 Score=22.95 Aligned_cols=99 Identities=11% Similarity=0.093 Sum_probs=52.9
Q ss_pred HHHHhccCeEEEEecCCCChh----------------hHhhhhcccCC--CCCCcEEEEEcCChhHHhh--c---CCCce
Q 047158 14 MSSRLLHRRVFVVLDNLDHID----------------QLKPLAGENKW--FGSGSRIIITNRNEHLLKV--F---EVDGV 70 (212)
Q Consensus 14 l~~~L~~kr~LlvlDdv~~~~----------------~~~~l~~~~~~--~~~gs~iivTtR~~~~~~~--~---~~~~~ 70 (212)
+.........+|++|+++... ....++..+.. ...+..||.||........ . .....
T Consensus 101 f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~~~~ld~al~r~gRf~~~ 180 (301)
T 3cf0_A 101 FDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQL 180 (301)
T ss_dssp HHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEESCGGGSCGGGGSTTSSCEE
T ss_pred HHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEecCCccccChHHhcCCccceE
Confidence 333334567899999997421 01222222211 1235567777765533211 1 12457
Q ss_pred EeCCCCChHHHHHHHHHhhcCCCCC-ChhHHHHHHHHHHHhCCCCch
Q 047158 71 CTVPRLCLGKSFQLFSWHAFRKDKP-PQRFMKLSRELLRCAEGLPLE 116 (212)
Q Consensus 71 ~~l~~l~~~~a~~Ll~~~~~~~~~~-~~~~~~~~~~i~~~c~glPLa 116 (212)
+.++.++.++-.+++.......... ... ...++..+.|.|-+
T Consensus 181 i~i~~p~~~~r~~il~~~l~~~~~~~~~~----~~~la~~~~g~sg~ 223 (301)
T 3cf0_A 181 IYIPLPDEKSRVAILKANLRKSPVAKDVD----LEFLAKMTNGFSGA 223 (301)
T ss_dssp EECCCCCHHHHHHHHHHHHTTSCBCSSCC----HHHHHHTCSSCCHH
T ss_pred EecCCcCHHHHHHHHHHHHccCCCCccch----HHHHHHHcCCCCHH
Confidence 8899999999888887665322111 111 23455556666643
No 55
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=38.36 E-value=94 Score=26.06 Aligned_cols=79 Identities=9% Similarity=0.081 Sum_probs=44.4
Q ss_pred HHHHHHhccCeEEEEecCCCCh-------------hhHhhhhcccC--CCCCCcEEEEEcCChhHH-hhc----CCCceE
Q 047158 12 NMMSSRLLHRRVFVVLDNLDHI-------------DQLKPLAGENK--WFGSGSRIIITNRNEHLL-KVF----EVDGVC 71 (212)
Q Consensus 12 ~~l~~~L~~kr~LlvlDdv~~~-------------~~~~~l~~~~~--~~~~gs~iivTtR~~~~~-~~~----~~~~~~ 71 (212)
..+...-.++..+|+||+++.. .....|+..+. ....+..||.||...... ..+ .....+
T Consensus 288 ~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~~~Ld~al~r~gRf~~~i 367 (489)
T 3hu3_A 288 KAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREV 367 (489)
T ss_dssp HHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCGGGBCGGGGSTTSSCEEE
T ss_pred HHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecCCccccCHHHhCCCcCceEE
Confidence 3444455567789999999421 11122222211 122344566666654321 111 123468
Q ss_pred eCCCCChHHHHHHHHHhhc
Q 047158 72 TVPRLCLGKSFQLFSWHAF 90 (212)
Q Consensus 72 ~l~~l~~~~a~~Ll~~~~~ 90 (212)
.++..+.++-.++|.....
T Consensus 368 ~i~~P~~~eR~~IL~~~~~ 386 (489)
T 3hu3_A 368 DIGIPDATGRLEILQIHTK 386 (489)
T ss_dssp ECCCCCHHHHHHHHHHHTT
T ss_pred EeCCCCHHHHHHHHHHHHh
Confidence 8999999999999987763
No 56
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=37.60 E-value=25 Score=21.43 Aligned_cols=37 Identities=3% Similarity=-0.084 Sum_probs=27.1
Q ss_pred CCCHHHHHHhhhhcCCcchhhHHHHhhccCceecCCC
Q 047158 156 GMDKDYVLKILQGCGFSSEIVFFVLTQRCLIVIDEDN 192 (212)
Q Consensus 156 ~~~~~~l~~~~~~~~~~~~~~l~~L~~~sll~~~~~~ 192 (212)
..+...+...+.-+......+++.|.+.|+|.....|
T Consensus 24 ~psv~EIa~~lgvS~~TVrr~L~~Le~kG~I~R~~gg 60 (77)
T 2jt1_A 24 PVKTRDIADAAGLSIYQVRLYLEQLHDVGVLEKVNAG 60 (77)
T ss_dssp CEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEESCS
T ss_pred CcCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEecCCC
Confidence 3566666666655545567789999999999987644
No 57
>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0
Probab=37.06 E-value=65 Score=22.50 Aligned_cols=46 Identities=7% Similarity=-0.057 Sum_probs=33.3
Q ss_pred hHHhhhhccCCC-CCHHHHHHhhhhcCCcchhhHHHHhhccCceecC
Q 047158 145 NVFMDIAHLFVG-MDKDYVLKILQGCGFSSEIVFFVLTQRCLIVIDE 190 (212)
Q Consensus 145 ~~~~~la~f~~~-~~~~~l~~~~~~~~~~~~~~l~~L~~~sll~~~~ 190 (212)
+++.+++..+.. ++.+.+.....-..-.....+..|...++|+...
T Consensus 16 r~l~~La~~~~~~~s~~~IA~~~~is~~~l~kil~~L~~aGlv~s~r 62 (162)
T 3k69_A 16 HSILYLDAHRDSKVASRELAQSLHLNPVMIRNILSVLHKHGYLTGTV 62 (162)
T ss_dssp HHHHHHHTTTTSCBCHHHHHHHHTSCGGGTHHHHHHHHHTTSSEEEC
T ss_pred HHHHHHHhCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeec
Confidence 456677776543 7888877776655555566799999999998653
No 58
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=36.89 E-value=60 Score=18.61 Aligned_cols=40 Identities=18% Similarity=0.160 Sum_probs=31.2
Q ss_pred hhhhccCCCCCHHHHHHhhhhcCCcchhhHHHHhhccCce
Q 047158 148 MDIAHLFVGMDKDYVLKILQGCGFSSEIVFFVLTQRCLIV 187 (212)
Q Consensus 148 ~~la~f~~~~~~~~l~~~~~~~~~~~~~~l~~L~~~sll~ 187 (212)
..|.-.+.+++.+.+..++.+++...+.+++.|.+.+.=.
T Consensus 14 ~~L~emFP~ld~~~I~~vL~a~~gdvd~aI~~LL~m~~~~ 53 (59)
T 1wgl_A 14 KAIQDMFPNMDQEVIRSVLEAQRGNKDAAINSLLQMGEEP 53 (59)
T ss_dssp HHHHHHCSSSCHHHHHHHHTTTTTCHHHHHHHHHHSSCCC
T ss_pred HHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHcCcCCC
Confidence 3343344678999999999999988899999998876544
No 59
>2izx_A CAMP-dependent protein kinase type II-alpha regulatory subunit; CAMP-binding, phosphorylation, nucleotide-binding, PKA, CAMP, anchor, kinase, acetylation; 1.3A {Homo sapiens} PDB: 2hwn_A
Probab=36.67 E-value=18 Score=18.88 Aligned_cols=17 Identities=12% Similarity=0.507 Sum_probs=14.2
Q ss_pred ecHHHHHHHHHHHhcCC
Q 047158 196 MHDLIRDMKEKLFAKNP 212 (212)
Q Consensus 196 mH~lv~~~a~~~~~~~~ 212 (212)
+++++.++++++.+++|
T Consensus 7 l~~lL~~~~~~vl~~qP 23 (41)
T 2izx_A 7 LTELLQGYTVEVLRQQP 23 (41)
T ss_dssp HHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHCC
Confidence 56789999999888776
No 60
>3r4k_A Transcriptional regulator, ICLR family; DNA/RNA-binding 3-helical bundle, profilin-like, structural joint center for structural genomics, JCSG; 2.46A {Ruegeria SP}
Probab=35.69 E-value=30 Score=26.25 Aligned_cols=52 Identities=4% Similarity=-0.052 Sum_probs=37.7
Q ss_pred CCCHHHHHHhhhhcCCcchhhHHHHhhccCceecCC-CcEEecHHHHHHHHHH
Q 047158 156 GMDKDYVLKILQGCGFSSEIVFFVLTQRCLIVIDED-NRLKMHDLIRDMKEKL 207 (212)
Q Consensus 156 ~~~~~~l~~~~~~~~~~~~~~l~~L~~~sll~~~~~-~~~~mH~lv~~~a~~~ 207 (212)
+.+...+.+......-.....+..|.+.+++...++ ++|++-.-+-.++...
T Consensus 21 ~lsl~eia~~lgl~ksT~~RlL~tL~~~G~v~~~~~~~~Y~lG~~~~~lg~~~ 73 (260)
T 3r4k_A 21 EIGLSDLTRLSGMNKATVYRLMSELQEAGFVEQVEGARSYRLGPQVLRLAALR 73 (260)
T ss_dssp EEEHHHHHHHHCSCHHHHHHHHHHHHHTTSEEECSSSSEEEECTTHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEcCCCCcEEcCHHHHHHHHHH
Confidence 467777777665554455667999999999998875 7898877666665543
No 61
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=35.44 E-value=44 Score=26.23 Aligned_cols=130 Identities=12% Similarity=0.083 Sum_probs=73.4
Q ss_pred ceEeCCCCChHHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCCCch-----h------hhc---cCCchhHHHHHHH-
Q 047158 69 GVCTVPRLCLGKSFQLFSWHAFRKDKPPQRFMKLSRELLRCAEGLPLE-----E------KLK---RIPNEEILNKLRV- 133 (212)
Q Consensus 69 ~~~~l~~l~~~~a~~Ll~~~~~~~~~~~~~~~~~~~~i~~~c~glPLa-----~------~l~---~~~~~~v~~~l~~- 133 (212)
..+.+++.+.++-.+++.+.+...... -..+.+..|++.+.|.|-. . ... ......+..++..
T Consensus 173 l~~~Ld~~~~~~l~~iL~~~~~~~~~~--~~~~~~~~ia~~~~G~~R~a~~ll~~~~~~a~~~~~~~It~~~v~~al~~~ 250 (334)
T 1in4_A 173 IILELDFYTVKELKEIIKRAASLMDVE--IEDAAAEMIAKRSRGTPRIAIRLTKRVRDMLTVVKADRINTDIVLKTMEVL 250 (334)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHHTTCC--BCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHH
T ss_pred ceeeCCCCCHHHHHHHHHHHHHHcCCC--cCHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHh
Confidence 357899999999999998765321111 2234577888889998854 1 111 1122334444432
Q ss_pred hh--cCCCCchhhhHHhhhh-ccCC-CCCHHHHHHhhhhcCCcchhhHH-HHhhccCceecCCCcEEecHHHH
Q 047158 134 SF--DVLNDDEEKNVFMDIA-HLFV-GMDKDYVLKILQGCGFSSEIVFF-VLTQRCLIVIDEDNRLKMHDLIR 201 (212)
Q Consensus 134 s~--~~L~~~~~~~~~~~la-~f~~-~~~~~~l~~~~~~~~~~~~~~l~-~L~~~sll~~~~~~~~~mH~lv~ 201 (212)
.+ ..+ +...+..+..+. .|.. ++....+......+....+...+ .|...++++....|++-...-.+
T Consensus 251 ~~~~~~l-~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~t~~~~~~~~l~~~g~i~~~~~gr~~~~~~~~ 322 (334)
T 1in4_A 251 NIDDEGL-DEFDRKILKTIIEIYRGGPVGLNALAASLGVEADTLSEVYEPYLLQAGFLARTPRGRIVTEKAYK 322 (334)
T ss_dssp TCCTTCC-CHHHHHHHHHHHHHSTTCCBCHHHHHHHHTSCHHHHHHHTHHHHHHTTSEEEETTEEEECHHHHH
T ss_pred CCCcCCC-CHHHHHHHHHHHHHhCCCcchHHHHHHHhCCCcchHHHHHHHHHHHcCCeecccccHHhhHHHHH
Confidence 22 244 444455554443 3433 26666666555443222222222 78899999999888865444333
No 62
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=34.42 E-value=1e+02 Score=20.42 Aligned_cols=78 Identities=13% Similarity=0.157 Sum_probs=45.3
Q ss_pred HHHHHhhcCCC-CchhhhHHhhhhccCC----CCCHHHHHHhhhhcCCcchhhHHHHhhccCceecC----CC----cEE
Q 047158 129 NKLRVSFDVLN-DDEEKNVFMDIAHLFV----GMDKDYVLKILQGCGFSSEIVFFVLTQRCLIVIDE----DN----RLK 195 (212)
Q Consensus 129 ~~l~~s~~~L~-~~~~~~~~~~la~f~~----~~~~~~l~~~~~~~~~~~~~~l~~L~~~sll~~~~----~~----~~~ 195 (212)
..+.--|..|. ++..-.++.++..|.. +.+...+........-.....++.|.++|+|.... +| .|.
T Consensus 19 ~~ll~~y~~lgLt~~e~~vll~L~~~~~~~~~~ps~~~LA~~l~~s~~~V~~~l~~Le~kGlI~~~~~~~~~g~~~~~Yd 98 (128)
T 2vn2_A 19 KLLLGHYKQLGLGEGELVLLLHMQSFFEEGVLFPTPAELAERMTVSAAECMEMVRRLLQKGMIAIEEHTDEQGIRNEKYT 98 (128)
T ss_dssp HHHHTTTTTTTCCHHHHHHHHHHHHHHTTTCSSCCHHHHHHTSSSCHHHHHHHHHHHHHTTSSEECC----------CEE
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEeEECCCCcEEEEEe
Confidence 34444566430 3333334444444411 25666666655444434455799999999999743 22 399
Q ss_pred ecHHHHHHHHH
Q 047158 196 MHDLIRDMKEK 206 (212)
Q Consensus 196 mH~lv~~~a~~ 206 (212)
+-+++..+..-
T Consensus 99 l~pl~~kL~~~ 109 (128)
T 2vn2_A 99 LEPLWEKLVHH 109 (128)
T ss_dssp CHHHHHHHHHH
T ss_pred hHHHHHHHHHH
Confidence 99998877644
No 63
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=33.38 E-value=55 Score=23.16 Aligned_cols=61 Identities=10% Similarity=0.049 Sum_probs=43.1
Q ss_pred HHHHHhhcCCCCchhhhHHhhhhccCC-CCCHHHHHHhhhhcCCcchhhHHHHhhccCceecC
Q 047158 129 NKLRVSFDVLNDDEEKNVFMDIAHLFV-GMDKDYVLKILQGCGFSSEIVFFVLTQRCLIVIDE 190 (212)
Q Consensus 129 ~~l~~s~~~L~~~~~~~~~~~la~f~~-~~~~~~l~~~~~~~~~~~~~~l~~L~~~sll~~~~ 190 (212)
..+.-.+..| ++..-..+..+...|. +.+...+...+....-.....++.|.++|||....
T Consensus 30 ~~~~~~~~~l-t~~q~~vL~~L~~~~~~~~t~~eLa~~l~is~~tvs~~l~~Le~~GlV~r~~ 91 (189)
T 3nqo_A 30 IEGDKYFGIL-TSRQYMTILSILHLPEEETTLNNIARKMGTSKQNINRLVANLEKNGYVDVIP 91 (189)
T ss_dssp HHHHHHHCSS-CHHHHHHHHHHHHSCGGGCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHccC-CHHHHHHHHHHHhccCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecc
Confidence 3334444567 7777777777777664 58888888877655444556799999999999653
No 64
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=32.33 E-value=1.1e+02 Score=22.70 Aligned_cols=71 Identities=15% Similarity=0.268 Sum_probs=37.6
Q ss_pred ccCeEEEEecCCCChh-----------------hHhhhhcccCCC---CCCcEEEEEcCChhHHh-h-c---CCCceEeC
Q 047158 19 LHRRVFVVLDNLDHID-----------------QLKPLAGENKWF---GSGSRIIITNRNEHLLK-V-F---EVDGVCTV 73 (212)
Q Consensus 19 ~~kr~LlvlDdv~~~~-----------------~~~~l~~~~~~~---~~gs~iivTtR~~~~~~-~-~---~~~~~~~l 73 (212)
..+..+|++|+++... .+..++..+... .....||.||....... . . .....+.+
T Consensus 101 ~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i 180 (268)
T 2r62_A 101 KQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEILDPALMRPGRFDRQVLV 180 (268)
T ss_dssp HSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCSCCEEEECBSCCTTSCGGGGSSSSSCCCCBC
T ss_pred hcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCCCEEEEEecCCchhcCHhHcCCCCCCeEEEe
Confidence 3456899999996431 122333322211 12245666766543211 1 1 12345777
Q ss_pred CCCChHHHHHHHHHhh
Q 047158 74 PRLCLGKSFQLFSWHA 89 (212)
Q Consensus 74 ~~l~~~~a~~Ll~~~~ 89 (212)
+.++.++-.+++....
T Consensus 181 ~~p~~~~r~~il~~~~ 196 (268)
T 2r62_A 181 DKPDFNGRVEILKVHI 196 (268)
T ss_dssp CCCCTTTHHHHHHHHT
T ss_pred cCcCHHHHHHHHHHHH
Confidence 7788777777776544
No 65
>2kyg_A CAMP-dependent protein kinase type II-alpha regul subunit; protein/protein, homodimer bound to monomer, protein binding; NMR {Homo sapiens}
Probab=28.08 E-value=30 Score=19.05 Aligned_cols=17 Identities=12% Similarity=0.507 Sum_probs=14.2
Q ss_pred ecHHHHHHHHHHHhcCC
Q 047158 196 MHDLIRDMKEKLFAKNP 212 (212)
Q Consensus 196 mH~lv~~~a~~~~~~~~ 212 (212)
+++++.+|++++.+++|
T Consensus 15 l~~lL~~~~~evlr~qP 31 (50)
T 2kyg_A 15 LTELLQGYTVEVLRQQP 31 (50)
T ss_dssp HHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHCC
Confidence 66789999999888876
No 66
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=28.06 E-value=1.1e+02 Score=18.92 Aligned_cols=62 Identities=5% Similarity=-0.012 Sum_probs=38.8
Q ss_pred hcCCCCchhhhHHhhhhccCCCCCHHHHHHhhhhcCCcchhhHHHHhhccCceecCCCc---EEecH
Q 047158 135 FDVLNDDEEKNVFMDIAHLFVGMDKDYVLKILQGCGFSSEIVFFVLTQRCLIVIDEDNR---LKMHD 198 (212)
Q Consensus 135 ~~~L~~~~~~~~~~~la~f~~~~~~~~l~~~~~~~~~~~~~~l~~L~~~sll~~~~~~~---~~mH~ 198 (212)
+..|..+.....+..++ .++.+...+........-.....++.|.+.|+|....+|+ |++-+
T Consensus 17 ~~~l~~~~r~~Il~~L~--~~~~~~~ela~~l~is~~tvs~~L~~L~~~Glv~~~~~g~~~~y~l~~ 81 (102)
T 3pqk_A 17 LKTLSHPVRLMLVCTLV--EGEFSVGELEQQIGIGQPTLSQQLGVLRESGIVETRRNIKQIFYRLTE 81 (102)
T ss_dssp HHHHCSHHHHHHHHHHH--TCCBCHHHHHHHHTCCTTHHHHHHHHHHHTTSEEEECSSSCCEEEECS
T ss_pred HHHcCCHHHHHHHHHHH--hCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEeCCEEEEEECc
Confidence 44452233333444443 2347777777777655555566799999999999876665 66553
No 67
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=27.89 E-value=1.1e+02 Score=24.15 Aligned_cols=70 Identities=9% Similarity=0.019 Sum_probs=38.4
Q ss_pred ccCeEEEEecCCCChh---hHhhhhccc-CCCCCCcEEEEEcCChhHH-hhc------CC-CceEeCCCCChHHHHHHHH
Q 047158 19 LHRRVFVVLDNLDHID---QLKPLAGEN-KWFGSGSRIIITNRNEHLL-KVF------EV-DGVCTVPRLCLGKSFQLFS 86 (212)
Q Consensus 19 ~~kr~LlvlDdv~~~~---~~~~l~~~~-~~~~~gs~iivTtR~~~~~-~~~------~~-~~~~~l~~l~~~~a~~Ll~ 86 (212)
.++.++++||.++... .+..+.... ...++. .||.++...+.. ..+ .. ...+.+.+.+.++-.+++.
T Consensus 130 ~~~~~ii~lDE~d~l~~q~~L~~l~~~~~~~~s~~-~vI~i~n~~d~~~~~L~~~v~SR~~~~~i~F~pYt~~el~~Il~ 208 (318)
T 3te6_A 130 KKRKTLILIQNPENLLSEKILQYFEKWISSKNSKL-SIICVGGHNVTIREQINIMPSLKAHFTEIKLNKVDKNELQQMII 208 (318)
T ss_dssp GSCEEEEEEECCSSSCCTHHHHHHHHHHHCSSCCE-EEEEECCSSCCCHHHHHTCHHHHTTEEEEECCCCCHHHHHHHHH
T ss_pred cCCceEEEEecHHHhhcchHHHHHHhcccccCCcE-EEEEEecCcccchhhcchhhhccCCceEEEeCCCCHHHHHHHHH
Confidence 3567999999998643 222222110 112222 344444332211 111 11 2468999999999999988
Q ss_pred Hhh
Q 047158 87 WHA 89 (212)
Q Consensus 87 ~~~ 89 (212)
..+
T Consensus 209 ~Rl 211 (318)
T 3te6_A 209 TRL 211 (318)
T ss_dssp HHH
T ss_pred HHH
Confidence 765
No 68
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=27.53 E-value=1.6e+02 Score=20.59 Aligned_cols=62 Identities=10% Similarity=0.006 Sum_probs=33.5
Q ss_pred hccCeEEEEecCCC--C---hhhHhhhhcccCCCCCCcEEEEEc---CChhHHhhcCC---CceEeCCCCChHHH
Q 047158 18 LLHRRVFVVLDNLD--H---IDQLKPLAGENKWFGSGSRIIITN---RNEHLLKVFEV---DGVCTVPRLCLGKS 81 (212)
Q Consensus 18 L~~kr~LlvlDdv~--~---~~~~~~l~~~~~~~~~gs~iivTt---R~~~~~~~~~~---~~~~~l~~l~~~~a 81 (212)
+..+.-+++||.+. + ....+.+...+.. .+..+|++| .+......+.. ..++.+...+.++.
T Consensus 96 l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~--~~~~~i~~~H~~h~~~~~~~i~~r~~~~i~~~~~~~r~~~ 168 (178)
T 1ye8_A 96 KKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD--PNVNVVATIPIRDVHPLVKEIRRLPGAVLIELTPENRDVI 168 (178)
T ss_dssp HHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC--TTSEEEEECCSSCCSHHHHHHHTCTTCEEEECCTTTTTTH
T ss_pred cccCCCEEEEeCCCCcccCCHHHHHHHHHHHhc--CCCeEEEEEccCCCchHHHHHHhcCCcEEEEecCcCHHHH
Confidence 66777899999952 2 2222333333332 344466666 35455444322 35777776665444
No 69
>1y0n_A Hypothetical UPF0270 protein PA3463; MCSG, midwest center for structural genomics, protein struct initiative, PSI, structural genomics; 2.00A {Pseudomonas aeruginosa} SCOP: d.291.1.1
Probab=26.83 E-value=81 Score=19.31 Aligned_cols=28 Identities=11% Similarity=0.167 Sum_probs=23.7
Q ss_pred chHHHHHHHHHHhccCeEEEEecCCCCh
Q 047158 6 SIDRGLNMMSSRLLHRRVFVVLDNLDHI 33 (212)
Q Consensus 6 ~~~~~~~~l~~~L~~kr~LlvlDdv~~~ 33 (212)
+.++.++.++..|+....+|++|...+.
T Consensus 35 sL~~kv~qv~~qL~~GeavIvfse~~Es 62 (78)
T 1y0n_A 35 PLDVRVERARHALRRGEAVILFDPESQQ 62 (78)
T ss_dssp CHHHHHHHHHHHHHTTSEEEEECTTTCC
T ss_pred cHHHHHHHHHHHHHcCCEEEEECCCCCe
Confidence 5677788999999999999999988654
No 70
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=26.48 E-value=1.1e+02 Score=18.70 Aligned_cols=44 Identities=9% Similarity=0.031 Sum_probs=29.8
Q ss_pred CCCCHHHHHHhhhhcCCcchhhHHHHhhccCceecCCCc---EEecH
Q 047158 155 VGMDKDYVLKILQGCGFSSEIVFFVLTQRCLIVIDEDNR---LKMHD 198 (212)
Q Consensus 155 ~~~~~~~l~~~~~~~~~~~~~~l~~L~~~sll~~~~~~~---~~mH~ 198 (212)
++.+...+........-.....++.|.+.|+|....+|+ |++.+
T Consensus 35 ~~~~~~ela~~l~is~~tvs~~L~~L~~~Glv~~~~~g~~~~y~l~~ 81 (98)
T 3jth_A 35 QELSVGELCAKLQLSQSALSQHLAWLRRDGLVTTRKEAQTVYYTLKS 81 (98)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCTTCCEEEECC
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEeCCEEEEEECH
Confidence 346666666665443333455799999999999877665 66643
No 71
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=25.53 E-value=76 Score=22.14 Aligned_cols=47 Identities=6% Similarity=-0.064 Sum_probs=30.6
Q ss_pred hhHHhhhhccCC--CCCHHHHHHhhhhcCCcchhhHHHHhhccCceecC
Q 047158 144 KNVFMDIAHLFV--GMDKDYVLKILQGCGFSSEIVFFVLTQRCLIVIDE 190 (212)
Q Consensus 144 ~~~~~~la~f~~--~~~~~~l~~~~~~~~~~~~~~l~~L~~~sll~~~~ 190 (212)
-+++.++|..+. .++.+.+........-..+..+..|...++|....
T Consensus 30 lr~L~~LA~~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~aGlv~s~r 78 (159)
T 3lwf_A 30 LTITLELAKRIGDGPISLRSIAQDKNLSEHYLEQLIGPLRNAGIVKSIR 78 (159)
T ss_dssp HHHHHHHHHTTTSCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHHhcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCeEEEec
Confidence 345566776543 26777776655444434455799999999998653
No 72
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=25.19 E-value=67 Score=21.82 Aligned_cols=52 Identities=15% Similarity=-0.026 Sum_probs=34.3
Q ss_pred CCCCchhhhHHhhhhccCCCCCHHHHHHhhhhcCCcchhhHHHHhhccCceec
Q 047158 137 VLNDDEEKNVFMDIAHLFVGMDKDYVLKILQGCGFSSEIVFFVLTQRCLIVID 189 (212)
Q Consensus 137 ~L~~~~~~~~~~~la~f~~~~~~~~l~~~~~~~~~~~~~~l~~L~~~sll~~~ 189 (212)
.| +...-.++..++-.+.+.....+...+....-.....++.|.++|||...
T Consensus 28 gL-t~~q~~vL~~L~~~~~~~~~~eLa~~l~~~~~tvs~~v~~Le~~GlV~R~ 79 (151)
T 4aik_A 28 EL-TQTHWVTLYNINRLPPEQSQIQLAKAIGIEQPSLVRTLDQLEEKGLITRH 79 (151)
T ss_dssp CC-CHHHHHHHHHHHHSCTTSCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred CC-CHHHHHHHHHHHHcCCCCcHHHHHHHHCcCHHHHHHHHHHHHhCCCeEee
Confidence 35 44444455566555666776667766655444455579999999999854
No 73
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=24.95 E-value=2.1e+02 Score=23.88 Aligned_cols=79 Identities=15% Similarity=0.197 Sum_probs=45.3
Q ss_pred HHHHHHhccCeEEEEecCCCCh----------------hhHhhhhcccCC--CCCCcEEEEEcCChhHHhh--cC---CC
Q 047158 12 NMMSSRLLHRRVFVVLDNLDHI----------------DQLKPLAGENKW--FGSGSRIIITNRNEHLLKV--FE---VD 68 (212)
Q Consensus 12 ~~l~~~L~~kr~LlvlDdv~~~----------------~~~~~l~~~~~~--~~~gs~iivTtR~~~~~~~--~~---~~ 68 (212)
..+.....+...+|++|+++.. ..+..++..+.. ...+..||.||........ .. ..
T Consensus 99 ~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld~allR~gRFd 178 (476)
T 2ce7_A 99 DLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDPALLRPGRFD 178 (476)
T ss_dssp HHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSCGGGGSTTSSC
T ss_pred HHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhchhhcccCcce
Confidence 3444555567899999999542 112333322211 1235567777766543321 11 23
Q ss_pred ceEeCCCCChHHHHHHHHHhhc
Q 047158 69 GVCTVPRLCLGKSFQLFSWHAF 90 (212)
Q Consensus 69 ~~~~l~~l~~~~a~~Ll~~~~~ 90 (212)
..+.++..+.++-.+++..+..
T Consensus 179 ~~i~i~~Pd~~~R~~Il~~~~~ 200 (476)
T 2ce7_A 179 KKIVVDPPDMLGRKKILEIHTR 200 (476)
T ss_dssp EEEECCCCCHHHHHHHHHHHHT
T ss_pred eEeecCCCCHHHHHHHHHHHHH
Confidence 4788888888887788876653
No 74
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=24.89 E-value=19 Score=25.26 Aligned_cols=38 Identities=18% Similarity=0.270 Sum_probs=20.1
Q ss_pred CeEEEEecCCCC--hhhH--hhhhcccCC-CCCCcEEEEEcCC
Q 047158 21 RRVFVVLDNLDH--IDQL--KPLAGENKW-FGSGSRIIITNRN 58 (212)
Q Consensus 21 kr~LlvlDdv~~--~~~~--~~l~~~~~~-~~~gs~iivTtR~ 58 (212)
+.-+||||+++. .+.| +.+...+.. ...|..+|+||..
T Consensus 100 ~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~ 142 (180)
T 3ec2_A 100 NSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNY 142 (180)
T ss_dssp TCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 356899999973 2222 122211111 1246678888863
No 75
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=24.21 E-value=1e+02 Score=24.48 Aligned_cols=47 Identities=19% Similarity=0.175 Sum_probs=25.6
Q ss_pred HHhccC-eEEEEecCCCCh---hhHhhhhcccCCCCCCcEEEEEcCChhHH
Q 047158 16 SRLLHR-RVFVVLDNLDHI---DQLKPLAGENKWFGSGSRIIITNRNEHLL 62 (212)
Q Consensus 16 ~~L~~k-r~LlvlDdv~~~---~~~~~l~~~~~~~~~gs~iivTtR~~~~~ 62 (212)
..+.+. .-+++||++... ..-..+...+.....+..||+||.+..+.
T Consensus 299 ~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~th~~~~~ 349 (371)
T 3auy_A 299 NALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIITHHRELE 349 (371)
T ss_dssp HHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCSCSEEEEEESCGGGG
T ss_pred HHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhccCCeEEEEEChHHHH
Confidence 444566 779999999743 22222222221111223588888887654
No 76
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=23.56 E-value=81 Score=20.92 Aligned_cols=53 Identities=13% Similarity=0.044 Sum_probs=34.8
Q ss_pred CCCCchhhhHHhhhhccC-CCCCHHHHHHhhhhcCCcchhhHHHHhhccCceecC
Q 047158 137 VLNDDEEKNVFMDIAHLF-VGMDKDYVLKILQGCGFSSEIVFFVLTQRCLIVIDE 190 (212)
Q Consensus 137 ~L~~~~~~~~~~~la~f~-~~~~~~~l~~~~~~~~~~~~~~l~~L~~~sll~~~~ 190 (212)
.| ++..-.++..+.-.+ ++.+...+...+.-..-.....++.|.++|+|....
T Consensus 38 gl-t~~q~~vL~~l~~~~~~~~t~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~~ 91 (148)
T 3jw4_A 38 GL-NSQQGRMIGYIYENQESGIIQKDLAQFFGRRGASITSMLQGLEKKGYIERRI 91 (148)
T ss_dssp TC-CHHHHHHHHHHHHHTTTCCCHHHHHHC------CHHHHHHHHHHTTSBCCC-
T ss_pred CC-CHHHHHHHHHHHhCCCCCCCHHHHHHHHCCChhHHHHHHHHHHHCCCEEeeC
Confidence 46 666666666666665 468888888877665555667899999999998654
No 77
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=22.98 E-value=58 Score=20.12 Aligned_cols=42 Identities=14% Similarity=0.068 Sum_probs=29.7
Q ss_pred CCCCHHHHHHhhhhcCCcchhhHHHHhhccCceecCCCcEEec
Q 047158 155 VGMDKDYVLKILQGCGFSSEIVFFVLTQRCLIVIDEDNRLKMH 197 (212)
Q Consensus 155 ~~~~~~~l~~~~~~~~~~~~~~l~~L~~~sll~~~~~~~~~mH 197 (212)
.+.+...+........-.....++.|.+.++|.... |.|++-
T Consensus 42 ~~~~~~eLa~~l~is~~tv~~~L~~L~~~Glv~~~~-g~y~l~ 83 (96)
T 1y0u_A 42 KGRSEEEIMQTLSLSKKQLDYHLKVLEAGFCIERVG-ERWVVT 83 (96)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET-TEEEEC
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEC-CEEEEC
Confidence 447777777666544434455799999999999876 677654
No 78
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=22.63 E-value=1.7e+02 Score=19.22 Aligned_cols=50 Identities=8% Similarity=-0.019 Sum_probs=33.3
Q ss_pred CCCHHHHHHhhhhcCCcchhhHHHHhhccCceecCCCcEEecHHHHHHHH
Q 047158 156 GMDKDYVLKILQGCGFSSEIVFFVLTQRCLIVIDEDNRLKMHDLIRDMKE 205 (212)
Q Consensus 156 ~~~~~~l~~~~~~~~~~~~~~l~~L~~~sll~~~~~~~~~mH~lv~~~a~ 205 (212)
+.+...+...+....-.....++.|.+.|+|....++.|.+-+--+.++.
T Consensus 22 ~~~~~ela~~l~vs~~tvs~~l~~Le~~Glv~r~~~~~~~LT~~g~~~~~ 71 (142)
T 1on2_A 22 YARVSDIAEALAVHPSSVTKMVQKLDKDEYLIYEKYRGLVLTSKGKKIGK 71 (142)
T ss_dssp SCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEETTTEEEECHHHHHHHH
T ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEeeCceEEEchhHHHHHH
Confidence 46666766666544444455799999999999876666766654444443
No 79
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=22.29 E-value=43 Score=21.74 Aligned_cols=61 Identities=15% Similarity=0.059 Sum_probs=34.8
Q ss_pred hcCCCCchhhhHHhhhhccCCCCCHHHHHHhhhhcCCcchhhHHHHhhccCceecCCCc---EEec
Q 047158 135 FDVLNDDEEKNVFMDIAHLFVGMDKDYVLKILQGCGFSSEIVFFVLTQRCLIVIDEDNR---LKMH 197 (212)
Q Consensus 135 ~~~L~~~~~~~~~~~la~f~~~~~~~~l~~~~~~~~~~~~~~l~~L~~~sll~~~~~~~---~~mH 197 (212)
|..|..+.....+..+. .++.+...+........-.....++.|.+.|+|.....|+ |++-
T Consensus 12 ~~al~~~~R~~Il~~L~--~~~~~~~eLa~~l~is~~tvs~hL~~L~~~GlV~~~~~gr~~~y~l~ 75 (118)
T 3f6o_A 12 FQALADPTRRAVLGRLS--RGPATVSELAKPFDMALPSFMKHIHFLEDSGWIRTHKQGRVRTCAIE 75 (118)
T ss_dssp HHHHTSHHHHHHHHHHH--TCCEEHHHHHTTCCSCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEC
T ss_pred HHHhCCHHHHHHHHHHH--hCCCCHHHHHHHhCcCHHHHHHHHHHHHHCCCeEEEecCCEEEEEEC
Confidence 33442333444444444 2345666665554333333344699999999998776565 5554
No 80
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=22.06 E-value=71 Score=19.67 Aligned_cols=49 Identities=6% Similarity=0.127 Sum_probs=29.1
Q ss_pred CCHHHHHHhhhhcCCcchhhHHHHhhccCceecCCCc---EEecHHHHHHHH
Q 047158 157 MDKDYVLKILQGCGFSSEIVFFVLTQRCLIVIDEDNR---LKMHDLIRDMKE 205 (212)
Q Consensus 157 ~~~~~l~~~~~~~~~~~~~~l~~L~~~sll~~~~~~~---~~mH~lv~~~a~ 205 (212)
++...+...+....-.....++.|.++|||....+++ |.+=+-=+.++.
T Consensus 31 ~t~~eLa~~l~i~~~tvs~~l~~Le~~Glv~~~~d~R~~~v~LT~~G~~~~~ 82 (95)
T 2qvo_A 31 VYIQYIASKVNSPHSYVWLIIKKFEEAKMVECELEGRTKIIRLTDKGQKIAQ 82 (95)
T ss_dssp EEHHHHHHHSSSCHHHHHHHHHHHHHTTSEEEEEETTEEEEEECHHHHHHHH
T ss_pred cCHHHHHHHHCcCHHHHHHHHHHHHHCcCccCCCCCCeEEEEEChhHHHHHH
Confidence 5666666655443333445699999999995444555 455444344433
No 81
>2dk8_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, RNA_POL_RPC34 domain, RNA polymerase III C39 subunit, NPPSFA; NMR {Mus musculus} SCOP: a.4.5.85
Probab=21.80 E-value=66 Score=19.85 Aligned_cols=49 Identities=6% Similarity=0.005 Sum_probs=33.4
Q ss_pred hhhHHhhhhccCCCCCHHHHHHhhhhcC-CcchhhHHHHhhccCceecCC
Q 047158 143 EKNVFMDIAHLFVGMDKDYVLKILQGCG-FSSEIVFFVLTQRCLIVIDED 191 (212)
Q Consensus 143 ~~~~~~~la~f~~~~~~~~l~~~~~~~~-~~~~~~l~~L~~~sll~~~~~ 191 (212)
..+.+-.|--+|.|++.+.|......-. ...-.+++.|+..+-|+.-..
T Consensus 16 e~~IL~l~~~~P~GItd~~L~~~~p~~~~~~r~~aIN~LL~~gkiel~K~ 65 (81)
T 2dk8_A 16 ENRIIELCHQFPHGITDQVIQNEMPHIEAQQRAVAINRLLSMGQLDLLRS 65 (81)
T ss_dssp HHHHHHHHHHCSSCEEHHHHHHHCTTSCHHHHHHHHHHHHHHTSEEEEEC
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHcCCeEEEec
Confidence 3446677888999999988877663311 112336999999888886543
No 82
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=21.74 E-value=59 Score=21.31 Aligned_cols=53 Identities=17% Similarity=0.125 Sum_probs=36.9
Q ss_pred CCCCchhhhHHhhhhccC-CCCCHHHHHHhhhhcCCcchhhHHHHhhccCceecC
Q 047158 137 VLNDDEEKNVFMDIAHLF-VGMDKDYVLKILQGCGFSSEIVFFVLTQRCLIVIDE 190 (212)
Q Consensus 137 ~L~~~~~~~~~~~la~f~-~~~~~~~l~~~~~~~~~~~~~~l~~L~~~sll~~~~ 190 (212)
.| ++..-.++..+...+ .+.+...+........-.....++.|.++|+|....
T Consensus 28 ~l-t~~~~~vL~~l~~~~~~~~t~~ela~~l~~~~~tvs~~l~~Le~~Gli~r~~ 81 (139)
T 3eco_A 28 DI-TNEQGHTLGYLYAHQQDGLTQNDIAKALQRTGPTVSNLLRNLERKKLIYRYV 81 (139)
T ss_dssp TC-CHHHHHHHHHHHHSTTTCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CC-CHHHHHHHHHHHhcCCCCcCHHHHHHHhCCCcccHHHHHHHHHHCCCEeecC
Confidence 45 566666667776666 367777777776554444455799999999998653
No 83
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=21.60 E-value=53 Score=21.94 Aligned_cols=53 Identities=15% Similarity=-0.036 Sum_probs=33.3
Q ss_pred CCCCchhhhHHhhhhccCCCCCHHHHHHhhhhcCCcchhhHHHHhhccCceecC
Q 047158 137 VLNDDEEKNVFMDIAHLFVGMDKDYVLKILQGCGFSSEIVFFVLTQRCLIVIDE 190 (212)
Q Consensus 137 ~L~~~~~~~~~~~la~f~~~~~~~~l~~~~~~~~~~~~~~l~~L~~~sll~~~~ 190 (212)
.| +...-.++..+...+.+++...+.....-..-.....++.|.++++|....
T Consensus 36 gl-t~~q~~vL~~l~~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le~~Glv~r~~ 88 (150)
T 3fm5_A 36 GL-RVRSYSVLVLACEQAEGVNQRGVAATMGLDPSQIVGLVDELEERGLVVRTL 88 (150)
T ss_dssp TC-CHHHHHHHHHHHHSTTCCCSHHHHHHHTCCHHHHHHHHHHHHTTTSEEC--
T ss_pred CC-CHHHHHHHHHHHhCCCCcCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEeeC
Confidence 35 554555555555555566777777666544434455799999999998653
No 84
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=21.49 E-value=1.9e+02 Score=21.79 Aligned_cols=59 Identities=15% Similarity=0.148 Sum_probs=34.1
Q ss_pred HHHHHhccCeEEEEecCCCCh---h---hHhhhhcccCCCCCCcEEEEEcCChhHHhhcCCCceEeC
Q 047158 13 MMSSRLLHRRVFVVLDNLDHI---D---QLKPLAGENKWFGSGSRIIITNRNEHLLKVFEVDGVCTV 73 (212)
Q Consensus 13 ~l~~~L~~kr~LlvlDdv~~~---~---~~~~l~~~~~~~~~gs~iivTtR~~~~~~~~~~~~~~~l 73 (212)
.+...|..+.=+++||..-.. . .+..++..+. ..|..||++|.+...+....+..++.+
T Consensus 174 ~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~--~~g~tviivtHd~~~~~~~~~d~v~~l 238 (267)
T 2zu0_C 174 DILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLR--DGKRSFIIVTHYQRILDYIKPDYVHVL 238 (267)
T ss_dssp HHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTC--CSSCEEEEECSSGGGGGTSCCSEEEEE
T ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH--hcCCEEEEEeeCHHHHHhhcCCEEEEE
Confidence 455566667778999988632 2 2223333332 236779999998776654323444433
No 85
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=21.45 E-value=73 Score=21.64 Aligned_cols=48 Identities=10% Similarity=-0.066 Sum_probs=29.9
Q ss_pred hhhHHhhhhccCC--CCCHHHHHHhhhhcCCcchhhHHHHhhccCceecC
Q 047158 143 EKNVFMDIAHLFV--GMDKDYVLKILQGCGFSSEIVFFVLTQRCLIVIDE 190 (212)
Q Consensus 143 ~~~~~~~la~f~~--~~~~~~l~~~~~~~~~~~~~~l~~L~~~sll~~~~ 190 (212)
.-+++.+++..+. .++.+.+.....-..-..+..+..|...++|....
T Consensus 13 Al~~L~~La~~~~~~~~s~~~IA~~~~i~~~~l~kil~~L~~aGlv~s~r 62 (143)
T 3t8r_A 13 GLTLMISLAKKEGQGCISLKSIAEENNLSDLYLEQLVGPLRNAGLIRSVR 62 (143)
T ss_dssp HHHHHHHHHTTTTSCCEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECS
T ss_pred HHHHHHHHHhCCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCEEEecC
Confidence 3345667776654 26666666554433333455689999999998653
No 86
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=20.83 E-value=94 Score=21.99 Aligned_cols=48 Identities=6% Similarity=0.131 Sum_probs=35.6
Q ss_pred CCCHHHHHHhhhhcCCcchhhHHHHhhccCceecCCCcEEecHH--HHHHH
Q 047158 156 GMDKDYVLKILQGCGFSSEIVFFVLTQRCLIVIDEDNRLKMHDL--IRDMK 204 (212)
Q Consensus 156 ~~~~~~l~~~~~~~~~~~~~~l~~L~~~sll~~~~~~~~~mH~l--v~~~a 204 (212)
.++...++.+.+...-.....+..|.+.++|... .+++.++|. ++++|
T Consensus 169 ~~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~~~-~~~i~i~d~~~L~~~a 218 (220)
T 3dv8_A 169 KITHETIANHLGSHREVITRMLRYFQVEGLVKLS-RGKITILDSKRLETLQ 218 (220)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE-TTEEEESCHHHHHHHH
T ss_pred cCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEeC-CCEEEEeCHHHHHHHh
Confidence 4788888888766554455679999999999876 677888864 44444
No 87
>2xrn_A HTH-type transcriptional regulator TTGV; DNA-binding protein, tetramer gene regulator, cooperative DN binding, multidrug binding protein; 2.90A {Pseudomonas putida} PDB: 2xro_A
Probab=20.32 E-value=86 Score=23.29 Aligned_cols=49 Identities=6% Similarity=0.091 Sum_probs=33.2
Q ss_pred CCCHHHHHHhhhhcCCcchhhHHHHhhccCceecCC-CcEEecHHHHHHH
Q 047158 156 GMDKDYVLKILQGCGFSSEIVFFVLTQRCLIVIDED-NRLKMHDLIRDMK 204 (212)
Q Consensus 156 ~~~~~~l~~~~~~~~~~~~~~l~~L~~~sll~~~~~-~~~~mH~lv~~~a 204 (212)
+.+...+.+...-..-.....++.|.+.+++....+ ++|++-.-+..++
T Consensus 21 ~~s~~ela~~~gl~~stv~r~l~~L~~~G~v~~~~~~~~Y~lg~~~~~lg 70 (241)
T 2xrn_A 21 GLSLAAIAQLVGLPRSTVQRIINALEEEFLVEALGPAGGFRLGPALGQLI 70 (241)
T ss_dssp CEEHHHHHHHTTSCHHHHHHHHHHHHTTTSEEECGGGCEEEECSHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEeCCCCeEEECHHHHHHH
Confidence 466666666554444445667999999999998754 7788765554444
No 88
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=20.30 E-value=84 Score=20.48 Aligned_cols=53 Identities=4% Similarity=-0.075 Sum_probs=36.3
Q ss_pred CCCCchhhhHHhhhhccCC-CCCHHHHHHhhhhcCCcchhhHHHHhhccCceecC
Q 047158 137 VLNDDEEKNVFMDIAHLFV-GMDKDYVLKILQGCGFSSEIVFFVLTQRCLIVIDE 190 (212)
Q Consensus 137 ~L~~~~~~~~~~~la~f~~-~~~~~~l~~~~~~~~~~~~~~l~~L~~~sll~~~~ 190 (212)
.| ++..-.++..+...+. +.+...+...+....-.....++.|.++|+|....
T Consensus 31 ~l-t~~~~~iL~~l~~~~~~~~~~~ela~~l~~~~~tvs~~l~~Le~~Gli~r~~ 84 (141)
T 3bro_A 31 DL-TGTQMTIIDYLSRNKNKEVLQRDLESEFSIKSSTATVLLQRMEIKKLLYRKV 84 (141)
T ss_dssp TC-CHHHHHHHHHHHHTTTSCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CC-CHHHHHHHHHHHHCCCCCcCHHHHHHHHCCCcchHHHHHHHHHHCCCEEeeC
Confidence 35 5555566666666654 57788777776554444455799999999998653
No 89
>3u5c_Z RP45, S31, YS23, 40S ribosomal protein S25-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_V 3o30_Q 3o2z_Q 3u5g_Z
Probab=20.12 E-value=85 Score=20.54 Aligned_cols=34 Identities=15% Similarity=0.074 Sum_probs=29.8
Q ss_pred CCHHHHHHhhhhcCCcchhhHHHHhhccCceecC
Q 047158 157 MDKDYVLKILQGCGFSSEIVFFVLTQRCLIVIDE 190 (212)
Q Consensus 157 ~~~~~l~~~~~~~~~~~~~~l~~L~~~sll~~~~ 190 (212)
|+...+...+.-.+-.+..+|++|.++|+|....
T Consensus 60 ITpsvlseRlkI~gSLAR~aLreL~~kGlIk~V~ 93 (108)
T 3u5c_Z 60 VSVSVLVDRLKIGGSLARIALRHLEKEGIIKPIS 93 (108)
T ss_dssp BSHHHHHHTTCCCTTHHHHHHHHHSSSSSCEEEE
T ss_pred EeHHHhhhhhhhhHHHHHHHHHHHHHCCCEEEEe
Confidence 7888888888888888999999999999998664
Done!