Query 047159
Match_columns 137
No_of_seqs 167 out of 1116
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 08:16:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047159.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047159hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0653 Cyclin B and related k 99.9 1.6E-25 3.5E-30 181.6 9.8 122 4-126 142-315 (391)
2 COG5024 Cyclin [Cell division 99.9 3.8E-25 8.1E-30 180.0 7.7 132 3-134 195-386 (440)
3 KOG0654 G2/Mitotic-specific cy 99.9 3.4E-25 7.3E-30 176.3 5.8 133 3-135 118-311 (359)
4 KOG0655 G1/S-specific cyclin E 99.9 2.2E-24 4.8E-29 168.4 8.2 131 3-134 127-322 (408)
5 KOG0656 G1/S-specific cyclin D 99.8 1.8E-18 3.8E-23 136.9 10.6 123 3-125 59-241 (335)
6 PF00134 Cyclin_N: Cyclin, N-t 99.5 3.5E-14 7.5E-19 97.5 5.9 77 3-79 13-127 (127)
7 TIGR00569 ccl1 cyclin ccl1. Un 99.1 1.2E-09 2.5E-14 86.4 12.5 118 14-132 45-228 (305)
8 PF02984 Cyclin_C: Cyclin, C-t 99.0 9.1E-11 2E-15 79.2 2.5 44 83-126 16-59 (118)
9 COG5333 CCL1 Cdk activating ki 98.2 1.4E-05 3E-10 62.7 8.5 100 27-126 53-208 (297)
10 KOG0834 CDK9 kinase-activating 98.1 4.8E-06 1E-10 66.3 5.7 100 27-126 47-211 (323)
11 KOG0835 Cyclin L [General func 98.1 5.3E-06 1.2E-10 65.7 5.7 72 60-131 118-210 (367)
12 smart00385 CYCLIN domain prese 98.0 1.5E-05 3.2E-10 49.6 4.9 43 84-126 13-55 (83)
13 KOG2496 Cdk activating kinase 97.6 0.0002 4.4E-09 56.3 6.9 108 16-124 83-222 (325)
14 PRK00423 tfb transcription ini 97.3 0.0047 1E-07 49.0 10.8 99 27-126 130-275 (310)
15 cd00043 CYCLIN Cyclin box fold 97.2 0.00096 2.1E-08 41.5 5.3 44 83-126 18-61 (88)
16 KOG0794 CDK8 kinase-activating 96.9 0.0012 2.6E-08 50.3 4.0 72 56-127 126-211 (264)
17 smart00385 CYCLIN domain prese 96.3 0.0063 1.4E-07 37.4 3.8 25 48-72 59-83 (83)
18 cd00043 CYCLIN Cyclin box fold 96.3 0.0059 1.3E-07 37.8 3.7 50 21-71 2-88 (88)
19 PF08613 Cyclin: Cyclin; Inte 95.2 0.051 1.1E-06 38.6 5.1 51 27-78 59-149 (149)
20 PF00382 TFIIB: Transcription 92.8 0.61 1.3E-05 28.6 5.9 43 84-126 11-53 (71)
21 COG1405 SUA7 Transcription ini 91.3 2.5 5.5E-05 33.4 9.1 78 47-125 159-249 (285)
22 KOG1675 Predicted cyclin [Gene 86.7 1.1 2.4E-05 35.8 4.1 48 51-103 259-307 (343)
23 PF00134 Cyclin_N: Cyclin, N-t 73.3 14 0.00029 24.5 5.5 60 60-126 31-90 (127)
24 TIGR00569 ccl1 cyclin ccl1. Un 63.2 14 0.00031 29.4 4.4 24 101-124 92-115 (305)
25 KOG0834 CDK9 kinase-activating 39.3 33 0.00071 27.7 3.0 24 102-125 74-97 (323)
26 KOG1597 Transcription initiati 33.6 2.5E+02 0.0055 22.5 9.0 68 56-125 175-258 (308)
27 PRK00423 tfb transcription ini 32.9 1.5E+02 0.0033 23.4 5.8 42 85-126 140-181 (310)
28 PF09080 K-cyclin_vir_C: K cyc 31.8 99 0.0022 20.3 3.7 26 94-119 32-58 (106)
29 PF01527 HTH_Tnp_1: Transposas 30.6 57 0.0012 19.5 2.5 29 14-42 5-42 (76)
30 PRK12542 RNA polymerase sigma 27.9 88 0.0019 22.1 3.5 56 15-70 122-185 (185)
31 PF13011 LZ_Tnp_IS481: leucine 27.2 99 0.0021 20.0 3.2 30 15-44 8-46 (85)
32 KOG4164 Cyclin ik3-1/CABLES [C 22.3 1.2E+02 0.0026 25.4 3.5 25 57-81 458-482 (497)
33 KOG0487 Transcription factor A 21.0 80 0.0017 25.4 2.2 16 56-71 240-255 (308)
34 COG3426 Butyrate kinase [Energ 20.3 90 0.002 25.2 2.3 18 47-64 220-239 (358)
No 1
>KOG0653 consensus Cyclin B and related kinase-activating proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.92 E-value=1.6e-25 Score=181.56 Aligned_cols=122 Identities=40% Similarity=0.598 Sum_probs=112.1
Q ss_pred CCCCCccccCCCCcHHHHHHHHH--hhhhhcccCchhhhhhHhhh-----------------------------------
Q 047159 4 PPMENFMSNQTDITPQMIGICHS--CQVHLKFDLMAETLYLMVTL----------------------------------- 46 (137)
Q Consensus 4 ~~~~~yl~~q~~it~~mR~~Lvd--~~v~~~~~l~~eTl~LAV~l----------------------------------- 46 (137)
.|.+ |+..|++++++||++||| ++||.+|+|.+||||||||+
T Consensus 142 ~p~~-~~~~~~e~~~~mR~iLvdwlvevh~~F~L~~ETL~LaVnliDRfL~~~~v~~~~lqLvgvsalf~IA~K~EE~~~ 220 (391)
T KOG0653|consen 142 LPLS-YDISQSEIRAKMRAILVDWLVEVHEKFGLSPETLYLAVNLIDRFLSKVKVPLKKLQLVGVSALLSIACKYEEISL 220 (391)
T ss_pred Cchh-hhcccccccHHHHHHHHHHHHHhhhhcCcCHHHHHHHHHHHHHHHHHhcccHHHhhHHhHHHHHHHHHhhhhccC
Confidence 3444 558899999999999999 99999999999999999999
Q ss_pred -chhhhhhhc-ccCCHHHHHHHHHHHHHHcCCccccc-------------CccHHHHHHHHHHHHHHhchhcccCcChHH
Q 047159 47 -SVKDLISIS-ETYTRDHMLRMEKLMLKKLKFRLNAA-------------QSDTKLEHLAFYLIELSLVQYEALKFKPSL 111 (137)
Q Consensus 47 -~~~~~~~~~-~~yt~~~i~~mE~~IL~~L~~~l~~~-------------~~d~~~~~~a~yl~el~l~d~~~~~~~pS~ 111 (137)
.++||++++ ++||++||++||+.||++|+|+++.+ ..|...+.+++|++|+++.|++++.++||.
T Consensus 221 P~v~dlv~isd~~~s~~~il~mE~~il~~L~f~l~~p~~~~FLrr~~ka~~~d~~~~~~~k~~~El~l~d~~~~~~~~s~ 300 (391)
T KOG0653|consen 221 PSVEDLVLITDGAYSREEILRMEKYILNVLEFDLSVPTPLSFLRRFLKAADYDIKTRTLVKYLLELSLCDYSMLSIPPSS 300 (391)
T ss_pred CccceeEeeeCCccchHHHHHHHHHHHhccCeeecCCchHHHHHHHHHhhhcchhHHHHHHHHHHHHHhhhHHhccCcHH
Confidence 468999999 99999999999999999999999954 346678999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCC
Q 047159 112 LCASAIYVARCTLQM 126 (137)
Q Consensus 112 iAaaai~lA~~~l~~ 126 (137)
+|||+.++++.+..+
T Consensus 301 ~aaa~~~~~~~~~~~ 315 (391)
T KOG0653|consen 301 SAAASFTLALRMLSK 315 (391)
T ss_pred HHHHHHHHHHHHhcc
Confidence 999999999999875
No 2
>COG5024 Cyclin [Cell division and chromosome partitioning]
Probab=99.92 E-value=3.8e-25 Score=180.01 Aligned_cols=132 Identities=32% Similarity=0.486 Sum_probs=122.7
Q ss_pred CCCCCCccccCCCCcHHHHHHHHH--hhhhhcccCchhhhhhHhhh----------------------------------
Q 047159 3 LPPMENFMSNQTDITPQMIGICHS--CQVHLKFDLMAETLYLMVTL---------------------------------- 46 (137)
Q Consensus 3 ~~~~~~yl~~q~~it~~mR~~Lvd--~~v~~~~~l~~eTl~LAV~l---------------------------------- 46 (137)
.+|.++||.+|+.+.+.||++||| ++||.+|++.|||||||||+
T Consensus 195 ~lp~~~yl~kq~~~~~~mR~~Lv~wlvevH~~F~llpeTL~lainiiDrfLs~~~v~l~k~QLvg~s~LfIa~K~EE~~~ 274 (440)
T COG5024 195 DLPNPNYLIKQSLYEWSMRSILVDWLVEVHGKFGLLPETLFLAINIIDRFLSSRVVSLEKYQLVGISALFIASKYEEVNC 274 (440)
T ss_pred hcCcHHHHhhcchhHHhHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHhHhHhcC
Confidence 478999999999999999999999 99999999999999999999
Q ss_pred -chhhhhhhc-ccCCHHHHHHHHHHHHHHcCCcccccC-------------ccHHHHHHHHHHHHHHhchhcccCcChHH
Q 047159 47 -SVKDLISIS-ETYTRDHMLRMEKLMLKKLKFRLNAAQ-------------SDTKLEHLAFYLIELSLVQYEALKFKPSL 111 (137)
Q Consensus 47 -~~~~~~~~~-~~yt~~~i~~mE~~IL~~L~~~l~~~~-------------~d~~~~~~a~yl~el~l~d~~~~~~~pS~ 111 (137)
.+++|++++ +.||+++|+++|+.||.+|+|+++.+. .|...++.+.|+++.+.+++.|.+++||.
T Consensus 275 p~i~~l~~~t~g~~t~~~i~~aE~~ml~~l~f~is~P~P~sFLRriSka~dyd~~srt~~k~~~e~s~~~~~f~~~~~S~ 354 (440)
T COG5024 275 PSIKDLVYATDGAFTRDDIIRAERYMLEVLDFNISWPSPMSFLRRISKASDYDIFSRTPAKFSSEISPVDYKFIQISPSW 354 (440)
T ss_pred HHHHHHHHHHcccccHHHHHHHHHHHhhhcccccCCCChHHHHHHHHhhcccchhhhhhHhhhCCchHhhhhhccCCchH
Confidence 678999999 999999999999999999999999543 45678889999999999999999999999
Q ss_pred HHHHHHHHHHHHhCC--------CCCC-Cccc
Q 047159 112 LCASAIYVARCTLQM--------RYTS-YIVD 134 (137)
Q Consensus 112 iAaaai~lA~~~l~~--------~~~~-y~~~ 134 (137)
.||||.+.|+.++++ +||| |+.+
T Consensus 355 ~~aaa~~~s~~~~~~~~w~~~l~~ySg~y~~~ 386 (440)
T COG5024 355 CAAAAMYLSRKILSQNQWDRTLIHYSGNYTNP 386 (440)
T ss_pred HHHHHHHHHHhhhccCCCCccccccCCCCCch
Confidence 999999999999985 7888 8775
No 3
>KOG0654 consensus G2/Mitotic-specific cyclin A [Cell cycle control, cell division, chromosome partitioning]
Probab=99.91 E-value=3.4e-25 Score=176.26 Aligned_cols=133 Identities=41% Similarity=0.600 Sum_probs=123.2
Q ss_pred CCCCCCccc-cCCCCcHHHHHHHHH--hhhhhcccCchhhhhhHhhh---------------------------------
Q 047159 3 LPPMENFMS-NQTDITPQMIGICHS--CQVHLKFDLMAETLYLMVTL--------------------------------- 46 (137)
Q Consensus 3 ~~~~~~yl~-~q~~it~~mR~~Lvd--~~v~~~~~l~~eTl~LAV~l--------------------------------- 46 (137)
++|.++||+ .|.++||.||.+||| ++|.+++++..+||||++++
T Consensus 118 ~rp~~~~~e~vq~d~t~smrgilvdwlvevsee~r~~~e~l~ls~~~~drfl~~~~~~~~k~ql~g~s~m~I~sk~ee~~ 197 (359)
T KOG0654|consen 118 ERPLPSKFEFVQADITPSMRGILVDWLVEVSEEYRLTFETLYLSVNYRDRFLSYKEVNKQKLQLVGISAMLIASKYEEIK 197 (359)
T ss_pred ccCcccceeeeecCCCcchhhhhhhhhhHHHHHHHhhhhheeecHHHHHHHhccCccHHHHHHHhCcccceeeccchhhc
Confidence 689999999 599999999999999 99999999999999999999
Q ss_pred --chhhhhhhc-ccCCHHHHHHHHHHHHHHcCCcccccC--------------ccHHHHHHHHHHHHHHhchhcccCcCh
Q 047159 47 --SVKDLISIS-ETYTRDHMLRMEKLMLKKLKFRLNAAQ--------------SDTKLEHLAFYLIELSLVQYEALKFKP 109 (137)
Q Consensus 47 --~~~~~~~~~-~~yt~~~i~~mE~~IL~~L~~~l~~~~--------------~d~~~~~~a~yl~el~l~d~~~~~~~p 109 (137)
.+++|++++ ++|+..|+.+||..+|+.|.|.+..+. ...++..++.|++|++++|+.|+.|.|
T Consensus 198 ~~~~~ef~~itd~ty~~~qv~~~~~~il~~l~~~~~~pt~~~~l~~~~~~~~~~~~~~e~~~~yl~elsll~~~~l~y~P 277 (359)
T KOG0654|consen 198 EPRVEEFCYITDNTYTYWQVLRMEIDILNALTFELVRPTSKTFLRRFLRVAQTPELQVEPLANYLTELSLLDYIFLKYLP 277 (359)
T ss_pred chHHHHHHhhhhhhhHHHHHHHHHHHHHHHhHHHHhCchHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhhHHHhccCh
Confidence 578999999 999999999999999999999999532 356788999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCC--------CCCCCcccc
Q 047159 110 SLLCASAIYVARCTLQM--------RYTSYIVDA 135 (137)
Q Consensus 110 S~iAaaai~lA~~~l~~--------~~~~y~~~~ 135 (137)
|.|||||+++|+.+++. +||||+.++
T Consensus 278 SliAasAv~lA~~~~~~~pW~~~L~~~T~y~~ed 311 (359)
T KOG0654|consen 278 SLIAASAVFLARLTLDFHPWNQTLEDYTGYKAED 311 (359)
T ss_pred HHHHHHHHHHHHhhccCCCCchhhHHhhcccHHH
Confidence 99999999999999984 889998764
No 4
>KOG0655 consensus G1/S-specific cyclin E [Cell cycle control, cell division, chromosome partitioning]
Probab=99.91 E-value=2.2e-24 Score=168.36 Aligned_cols=131 Identities=24% Similarity=0.399 Sum_probs=109.4
Q ss_pred CCCCCCccccCCCCcHHHHHHHHH--hhhhhcccCchhhhhhHhhh----------------------------------
Q 047159 3 LPPMENFMSNQTDITPQMIGICHS--CQVHLKFDLMAETLYLMVTL---------------------------------- 46 (137)
Q Consensus 3 ~~~~~~yl~~q~~it~~mR~~Lvd--~~v~~~~~l~~eTl~LAV~l---------------------------------- 46 (137)
.+....|+.+||++.|+||++|+| +|||+.++|..|||||||.|
T Consensus 127 ~l~~~~~l~qHpdlqp~mRaILlDWlmEVCEvykLHRETFyLAvDy~DRyl~t~~~v~kt~lQLIGitsLFIAAK~EEIY 206 (408)
T KOG0655|consen 127 YLRDKHFLEQHPDLQPQMRAILLDWLMEVCEVYKLHRETFYLAVDYFDRYLETQVEVSKTNLQLIGITSLFIAAKLEEIY 206 (408)
T ss_pred hhhhhHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHhhcc
Confidence 355666788999999999999999 99999999999999999999
Q ss_pred --chhhhhhhc-ccCCHHHHHHHHHHHHHHcCCcccc------------------------cCccH-HHHHHHHHHHHHH
Q 047159 47 --SVKDLISIS-ETYTRDHMLRMEKLMLKKLKFRLNA------------------------AQSDT-KLEHLAFYLIELS 98 (137)
Q Consensus 47 --~~~~~~~~~-~~yt~~~i~~mE~~IL~~L~~~l~~------------------------~~~d~-~~~~~a~yl~el~ 98 (137)
++.+|++++ ++||.++|+.||..||++|+|+|+. ++... ..-.+ .-++++|
T Consensus 207 pPKl~eFAyvTDgAcs~ddIltmE~iilkal~W~l~PiTii~WL~vylQv~~~n~~~k~l~Pq~~~~efiqi-aqlLDlc 285 (408)
T KOG0655|consen 207 PPKLIEFAYVTDGACSEDDILTMELIILKALKWELSPITIISWLNVYLQVDALNDAPKVLLPQYSQEEFIQI-AQLLDLC 285 (408)
T ss_pred CccccceeeeccCccchHHHHHHHHHHHHHhcccccceehHHHHHHHHHHHhcCCCCceeccccchHHHHHH-HHHHHHH
Confidence 677999999 9999999999999999999999992 11222 22333 3577999
Q ss_pred hchhcccCcChHHHHHHHHHHHHH-HhCCCCCCCccc
Q 047159 99 LVQYEALKFKPSLLCASAIYVARC-TLQMRYTSYIVD 134 (137)
Q Consensus 99 l~d~~~~~~~pS~iAaaai~lA~~-~l~~~~~~y~~~ 134 (137)
++|.+.+.|+-+.+||||++.-.. -.-++.|||-++
T Consensus 286 ~ldids~~fsYrilaAAal~h~~s~e~v~kaSG~~w~ 322 (408)
T KOG0655|consen 286 ILDIDSLEFSYRILAAAALCHFTSIEVVKKASGLEWD 322 (408)
T ss_pred HhccccccchHHHHHHHHHHHHhHHHHHHHcccccHH
Confidence 999999999999999999987433 233578888765
No 5
>KOG0656 consensus G1/S-specific cyclin D [Cell cycle control, cell division, chromosome partitioning]
Probab=99.78 E-value=1.8e-18 Score=136.87 Aligned_cols=123 Identities=20% Similarity=0.316 Sum_probs=99.2
Q ss_pred CCCCCCcc-ccCCCCcHHHHHHHHH--hhhhhcccCchhhhhhHhhh---------------------------------
Q 047159 3 LPPMENFM-SNQTDITPQMIGICHS--CQVHLKFDLMAETLYLMVTL--------------------------------- 46 (137)
Q Consensus 3 ~~~~~~yl-~~q~~it~~mR~~Lvd--~~v~~~~~l~~eTl~LAV~l--------------------------------- 46 (137)
+.|..+|. ..|..+++.||...+| .+||.++++.++|++||+||
T Consensus 59 ~~p~~~~~~~~~~~~~~~~R~~A~~WIl~V~~~~~~~~~~~~LA~NYlDRFls~~~l~k~k~W~lQLlAvaCLsLAsKme 138 (335)
T KOG0656|consen 59 HNPSLDYFLCVQKLILSSMRKQALDWILKVCEEYNFEPLVFLLAMNYLDRFLSSQKLPKDKPWMLQLLAVACLSLASKME 138 (335)
T ss_pred hCCCCchhhhcccccccHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHhhcccccCCCchHHHHHHHHHHHHHHHhhc
Confidence 45777754 4899999999999999 89999999999999999999
Q ss_pred -----chhhh-hhhc-ccCCHHHHHHHHHHHHHHcCCcccccCc-----------------cHHHHHHHHHHHHHHhchh
Q 047159 47 -----SVKDL-ISIS-ETYTRDHMLRMEKLMLKKLKFRLNAAQS-----------------DTKLEHLAFYLIELSLVQY 102 (137)
Q Consensus 47 -----~~~~~-~~~~-~~yt~~~i~~mE~~IL~~L~~~l~~~~~-----------------d~~~~~~a~yl~el~l~d~ 102 (137)
.+.|+ +.-+ +.|..+.|.+||..||++|+|++++.++ ...+...+.-++-.+..|.
T Consensus 139 E~~vPll~dl~v~~~~~~feaktI~rmELLVLstL~Wrl~aVTP~sF~~~fl~ki~~~~~~~~~~~~~~s~~ll~~~~d~ 218 (335)
T KOG0656|consen 139 ETDVPLLADLQVEYTDNVFEAKTIQRMELLVLSTLKWRLRAVTPFSFIDHFLSKISQKDHNKHLFLKHASLFLLSVITDI 218 (335)
T ss_pred CcCCchhhhhhhccccccccHHHHHHHHHHHHhhccccccCCCchHHHHHHHHHcCcccchHHHHHHHHHHHHHHHhhhh
Confidence 12233 3444 8899999999999999999999996432 1234555666666788999
Q ss_pred cccCcChHHHHHHHHHHHHHHhC
Q 047159 103 EALKFKPSLLCASAIYVARCTLQ 125 (137)
Q Consensus 103 ~~~~~~pS~iAaaai~lA~~~l~ 125 (137)
+|+.|+||+||+|++..+-..++
T Consensus 219 ~Fl~y~pSviAaa~~~~v~~~~~ 241 (335)
T KOG0656|consen 219 KFLEYPPSVIAAAAILSVSASVD 241 (335)
T ss_pred hhhcCChHHHHHHHHHHHHHhhc
Confidence 99999999999998866655554
No 6
>PF00134 Cyclin_N: Cyclin, N-terminal domain; InterPro: IPR006671 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs). Cyclins, together with the p34 (cdc2) or cdk2 kinases, form the Maturation Promoting Factor (MPF). There are two main groups of cyclins, G1/S cyclins, which are essential for the control of the cell cycle at the G1/S (start) transition, and G2/M cyclins, which are essential for the control of the cell cycle at the G2/M (mitosis) transition. G2/M cyclins accumulate steadily during G2 and are abruptly destroyed as cells exit from mitosis (at the end of the M-phase). In most species, there are multiple forms of G1 and G2 cyclins. For example, in vertebrates, there are two G2 cyclins, A and B, and at least three G1 cyclins, C, D, and E. Cyclin homologues have been found in various viruses, including Saimiriine herpesvirus 2 (Herpesvirus saimiri) and Human herpesvirus 8 (HHV-8) (Kaposi's sarcoma-associated herpesvirus). These viral homologues differ from their cellular counterparts in that the viral proteins have gained new functions and eliminated others to harness the cell and benefit the virus []. Cyclins contain two domains of similar all-alpha fold, of which this entry is associated with the N-terminal domain.; PDB: 2W2H_B 3RGF_B 1KXU_A 1JKW_A 1URC_D 2WMB_D 1H26_D 1GY3_B 2UUE_D 1E9H_D ....
Probab=99.50 E-value=3.5e-14 Score=97.54 Aligned_cols=77 Identities=38% Similarity=0.613 Sum_probs=68.4
Q ss_pred CCCCCCccccCCCCcHHHHHHHHH--hhhhhcccCchhhhhhHhhh----------------------------------
Q 047159 3 LPPMENFMSNQTDITPQMIGICHS--CQVHLKFDLMAETLYLMVTL---------------------------------- 46 (137)
Q Consensus 3 ~~~~~~yl~~q~~it~~mR~~Lvd--~~v~~~~~l~~eTl~LAV~l---------------------------------- 46 (137)
..|+++|++.|+++++.+|..+++ ++++..++++++|+++|+.|
T Consensus 13 ~~~~~~~~~~~~~~~~~~r~~~~~~i~~~~~~~~l~~~~~~~A~~~~dr~~~~~~~~~~~~~li~~~cl~lA~K~~e~~~ 92 (127)
T PF00134_consen 13 YKPNPDYLEQQPEITPEMRQIIIDWIIELCQRLKLSPETLHLAIYLFDRFLSKRPVNRSKLQLIALACLFLASKMEEDNP 92 (127)
T ss_dssp TTCCTTHGTGTSSHHHHHHHHHHHHHHHHHHHTT-BHHHHHHHHHHHHHHHTTS-TTCCGHHHHHHHHHHHHHHHHTSS-
T ss_pred HCcCccccccChhcCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhhcccccchhhhhhhhHHHHhhhhhcccc
Confidence 367899999999999999999999 89999999999999999999
Q ss_pred -chhhhhhhc-ccCCHHHHHHHHHHHHHHcCCccc
Q 047159 47 -SVKDLISIS-ETYTRDHMLRMEKLMLKKLKFRLN 79 (137)
Q Consensus 47 -~~~~~~~~~-~~yt~~~i~~mE~~IL~~L~~~l~ 79 (137)
.+++++.++ +.|+++++.+||+.||++|||+++
T Consensus 93 ~~~~~~~~~~~~~~~~~~i~~~E~~iL~~L~f~ln 127 (127)
T PF00134_consen 93 PSISDLIRISDNTFTKKDILEMEREILSALNFDLN 127 (127)
T ss_dssp -HHHHHHHHTTTSSHHHHHHHHHHHHHHHTTT---
T ss_pred chHHHHHHHHcCCCCHHHHHHHHHHHHHHCCCCcC
Confidence 467788888 999999999999999999999985
No 7
>TIGR00569 ccl1 cyclin ccl1. University).
Probab=99.13 E-value=1.2e-09 Score=86.43 Aligned_cols=118 Identities=19% Similarity=0.229 Sum_probs=86.6
Q ss_pred CCCcHHHHHHHHH------hhhhhccc--CchhhhhhHhhh----------------------------------chhhh
Q 047159 14 TDITPQMIGICHS------CQVHLKFD--LMAETLYLMVTL----------------------------------SVKDL 51 (137)
Q Consensus 14 ~~it~~mR~~Lvd------~~v~~~~~--l~~eTl~LAV~l----------------------------------~~~~~ 51 (137)
..+|+..-..++. .+++..++ |..+|+..|+.| ++.+|
T Consensus 45 ~~Lt~eeE~~l~~~y~~~i~~~~~~lkp~Lpq~viaTAivyf~RFy~~~Sv~~~~p~~Ia~tclfLA~KvEE~~~si~~f 124 (305)
T TIGR00569 45 IFLTPEEELDLVKYYEKRLLDFCSAFKPTMPTSVVGTAIMYFKRFYLNNSVMEYHPKIIMLTCVFLACKVEEFNVSIDQF 124 (305)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHhHHhccCchhhcCHHHHHHHHHHHHHhccccCcCHHHH
Confidence 3578755555555 78999999 999999999999 45666
Q ss_pred hhhc-cc--CCHHHHHHHHHHHHHHcCCcccccCcc--------------------HHHHHHH-HHHHHHHhchhcccCc
Q 047159 52 ISIS-ET--YTRDHMLRMEKLMLKKLKFRLNAAQSD--------------------TKLEHLA-FYLIELSLVQYEALKF 107 (137)
Q Consensus 52 ~~~~-~~--yt~~~i~~mE~~IL~~L~~~l~~~~~d--------------------~~~~~~a-~yl~el~l~d~~~~~~ 107 (137)
+... +. ...++|++||..||+.|+|+|.+..+- ..+...| .|+-+..+.|. ++.|
T Consensus 125 v~~~~~~~~~~~~~Il~~E~~lL~~L~F~L~V~hPyr~L~~~l~dl~~~l~~~~~~~~l~q~a~~~lndsl~Td~-~L~y 203 (305)
T TIGR00569 125 VGNLKETPLKALEQVLEYELLLIQQLNFHLIVHNPYRPLEGFLIDIKTRLPGLENPEYLRKHADKFLNRTLLTDA-YLLY 203 (305)
T ss_pred HhhccCCchhhHHHHHHHHHHHHHHCCCcEEeeCccHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHcCCc-eecC
Confidence 6554 33 367999999999999999999953321 1233444 44455444444 7779
Q ss_pred ChHHHHHHHHHHHHHHhCCCCCCCc
Q 047159 108 KPSLLCASAIYVARCTLQMRYTSYI 132 (137)
Q Consensus 108 ~pS~iAaaai~lA~~~l~~~~~~y~ 132 (137)
+||+||+||+++|...++.+..+|-
T Consensus 204 ~Ps~IAlAAI~lA~~~~~~~l~~~~ 228 (305)
T TIGR00569 204 TPSQIALAAILHTASRAGLNMESYL 228 (305)
T ss_pred CHHHHHHHHHHHHHHHhCCCCcccc
Confidence 9999999999999999986554443
No 8
>PF02984 Cyclin_C: Cyclin, C-terminal domain; InterPro: IPR004367 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs). Cyclins, together with the p34 (cdc2) or cdk2 kinases, form the Maturation Promoting Factor (MPF). There are two main groups of cyclins, G1/S cyclins, which are essential for the control of the cell cycle at the G1/S (start) transition, and G2/M cyclins, which are essential for the control of the cell cycle at the G2/M (mitosis) transition. G2/M cyclins accumulate steadily during G2 and are abruptly destroyed as cells exit from mitosis (at the end of the M-phase). In most species, there are multiple forms of G1 and G2 cyclins. For example, in vertebrates, there are two G2 cyclins, A and B, and at least three G1 cyclins, C, D, and E. Cyclin homologues have been found in various viruses, including Saimiriine herpesvirus 2 (Herpesvirus saimiri) and Human herpesvirus 8 (HHV-8) (Kaposi's sarcoma-associated herpesvirus). These viral homologues differ from their cellular counterparts in that the viral proteins have gained new functions and eliminated others to harness the cell and benefit the virus []. This is the C-terminal domain of cyclins.; GO: 0005634 nucleus; PDB: 3QHR_D 3QHW_B 1W98_B 1URC_D 2WMB_D 1H26_D 1GY3_B 2UUE_D 1E9H_D 2IW9_D ....
Probab=99.05 E-value=9.1e-11 Score=79.17 Aligned_cols=44 Identities=45% Similarity=0.725 Sum_probs=40.1
Q ss_pred ccHHHHHHHHHHHHHHhchhcccCcChHHHHHHHHHHHHHHhCC
Q 047159 83 SDTKLEHLAFYLIELSLVQYEALKFKPSLLCASAIYVARCTLQM 126 (137)
Q Consensus 83 ~d~~~~~~a~yl~el~l~d~~~~~~~pS~iAaaai~lA~~~l~~ 126 (137)
.+..++.+++|++|++++|+.|++|+||+|||||+++|+.+++.
T Consensus 16 ~~~~~~~~a~~l~el~l~~~~fl~~~PS~iAaAai~lA~~~~~~ 59 (118)
T PF02984_consen 16 ADQEVRNLARYLLELSLLDYEFLQYPPSVIAAAAILLARKILGK 59 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHSHHHTTS-HHHHHHHHHHHHHHHHHS
T ss_pred CcHHHHHHHHHHHHHHHhhccccCCCHHHHHHHHHHHHHHHhCc
Confidence 36779999999999999999999999999999999999999873
No 9
>COG5333 CCL1 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, cyclin H subunit [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=98.15 E-value=1.4e-05 Score=62.74 Aligned_cols=100 Identities=24% Similarity=0.357 Sum_probs=76.8
Q ss_pred hhhhhcccCchhhhhhHhhh---------------------------chhh----hhhhc----------ccCCHHHHHH
Q 047159 27 CQVHLKFDLMAETLYLMVTL---------------------------SVKD----LISIS----------ETYTRDHMLR 65 (137)
Q Consensus 27 ~~v~~~~~l~~eTl~LAV~l---------------------------~~~~----~~~~~----------~~yt~~~i~~ 65 (137)
..++.++++...++-.||-+ +++| +.-.+ ..=+++.|..
T Consensus 53 ~~l~~~L~lp~~~laTAi~~f~Rf~Lk~sv~e~~~~~vv~tcv~LA~K~ed~~~~I~i~~~~~~~~~se~~~~sr~~Il~ 132 (297)
T COG5333 53 MDLCTRLNLPQTVLATAILFFSRFYLKNSVEEISLYSVVTTCVYLACKVEDTPRDISIESFEARDLWSEEPKSSRERILE 132 (297)
T ss_pred HHHHHhcCCCcchHHHHHHHHHHHHhhcccccccHHHHHHhheeeeeecccccchhhHHHHHhhccccccccccHHHHHH
Confidence 67899999999999999988 2333 11111 1126889999
Q ss_pred HHHHHHHHcCCcccccCc--------------cH-HHHHHHHHHHHHHhchhcccCcChHHHHHHHHHHHHHHhCC
Q 047159 66 MEKLMLKKLKFRLNAAQS--------------DT-KLEHLAFYLIELSLVQYEALKFKPSLLCASAIYVARCTLQM 126 (137)
Q Consensus 66 mE~~IL~~L~~~l~~~~~--------------d~-~~~~~a~yl~el~l~d~~~~~~~pS~iAaaai~lA~~~l~~ 126 (137)
+|..+|++|+|++....+ +. +...+|.-++.=++...-.+.|+|..||+||+..|...++.
T Consensus 133 ~E~~lLEaL~fd~~V~hPy~~l~~f~~~~q~~~~~~~~~~aw~~inDa~~t~~~llypphiIA~a~l~ia~~~~~~ 208 (297)
T COG5333 133 YEFELLEALDFDLHVHHPYKYLEGFLKDLQEKDKYKLLQIAWKIINDALRTDLCLLYPPHIIALAALLIACEVLGM 208 (297)
T ss_pred HHHHHHHHcccceEeccccHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhceeeeecChHHHHHHHHHHHHHhcCC
Confidence 999999999999996432 12 45667766766677777788999999999999999999885
No 10
>KOG0834 consensus CDK9 kinase-activating protein cyclin T [Cell cycle control, cell division, chromosome partitioning]
Probab=98.13 E-value=4.8e-06 Score=66.33 Aligned_cols=100 Identities=21% Similarity=0.411 Sum_probs=79.2
Q ss_pred hhhhhcccCchhhhhhHhhh----------------------------------chhhhhhhc-ccCC------------
Q 047159 27 CQVHLKFDLMAETLYLMVTL----------------------------------SVKDLISIS-ETYT------------ 59 (137)
Q Consensus 27 ~~v~~~~~l~~eTl~LAV~l----------------------------------~~~~~~~~~-~~yt------------ 59 (137)
.+++.++++...|+..|+.+ +++|.+..+ ..+.
T Consensus 47 ~elg~~L~~~~~ti~tA~~~~hRFy~~~s~~~~~~~~vA~sclfLAgKvEetp~kl~dIi~~s~~~~~~~~~~~~~~~~~ 126 (323)
T KOG0834|consen 47 QELGVRLKMPQKTIATAIVIFHRFYMFHSFKKFDPYTVAASCLFLAGKVEETPRKLEDIIKVSYRYLNPKDLELEEVYWE 126 (323)
T ss_pred HHHHHHcCCCccchhhhhhhhhhhhhhcccccCcHHHHHHHHHHHHhhcccCcccHHHHHHHHHHHcCcccccHHHHHHH
Confidence 79999999999999998888 455555444 2222
Q ss_pred -HHHHHHHHHHHHHHcCCcccccCc-------------cH----HHHHHHHHHHHHHhchhcccCcChHHHHHHHHHHHH
Q 047159 60 -RDHMLRMEKLMLKKLKFRLNAAQS-------------DT----KLEHLAFYLIELSLVQYEALKFKPSLLCASAIYVAR 121 (137)
Q Consensus 60 -~~~i~~mE~~IL~~L~~~l~~~~~-------------d~----~~~~~a~yl~el~l~d~~~~~~~pS~iAaaai~lA~ 121 (137)
++.|+..|+.||++|+|++++..+ +. .+..+|..++.=++...-.++|+|..||+||+++|.
T Consensus 127 ~~~~Iv~~E~~lL~tl~Fdl~v~hPy~~ll~~~k~l~~~~~~~~~~a~~Aw~~~nD~~~t~~cL~y~p~~IAva~i~lA~ 206 (323)
T KOG0834|consen 127 LKERIVQLELLLLETLGFDLNVEHPYKYLLKYLKKLKADENLKQPLAQAAWNFVNDSLRTTLCLQYSPHSIAVACIHLAA 206 (323)
T ss_pred HHHHHHHHHHHHHHHccCceeccCchHHHHHHHHHhhhhhhccccHHHHHHHHhchhheeeeeEeecCcEEEeehhhHHH
Confidence 578999999999999999996432 11 356677777777777776799999999999999999
Q ss_pred HHhCC
Q 047159 122 CTLQM 126 (137)
Q Consensus 122 ~~l~~ 126 (137)
...+-
T Consensus 207 ~~~~~ 211 (323)
T KOG0834|consen 207 KLLGV 211 (323)
T ss_pred HHcCC
Confidence 99884
No 11
>KOG0835 consensus Cyclin L [General function prediction only]
Probab=98.13 E-value=5.3e-06 Score=65.71 Aligned_cols=72 Identities=21% Similarity=0.394 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHHHcCCcccccC---------------ccHHHHHHHHHHHHHHhchhcccCcChHHHHHHHHHHHHHHh
Q 047159 60 RDHMLRMEKLMLKKLKFRLNAAQ---------------SDTKLEHLAFYLIELSLVQYEALKFKPSLLCASAIYVARCTL 124 (137)
Q Consensus 60 ~~~i~~mE~~IL~~L~~~l~~~~---------------~d~~~~~~a~yl~el~l~d~~~~~~~pS~iAaaai~lA~~~l 124 (137)
+.+++++|+.||+.|+|+++... ....+...+.-|+..++-..-|..|+|+.||+||+++|-..+
T Consensus 118 k~~~ir~e~~ILr~LGF~~Hv~hPhklii~YLqtL~~~~~~~l~Q~~wNfmNDslRT~v~vry~pe~iACaciyLaAR~~ 197 (367)
T KOG0835|consen 118 KMQVIRAERRILRELGFDVHVEHPHKLIIMYLQTLQLPPNLKLLQAAWNFMNDSLRTDVFVRYSPESIACACIYLAARNL 197 (367)
T ss_pred hhHHHHHHHHHHHHhCCeeeeeccHHHHHHHHHHhcCCCchhHHHHHHHhhhhccccceeeecCHHHHHHHHHHHHHhhh
Confidence 56899999999999999999532 123467778888888888778999999999999999988887
Q ss_pred C------CCCCCC
Q 047159 125 Q------MRYTSY 131 (137)
Q Consensus 125 ~------~~~~~y 131 (137)
+ ++|..+
T Consensus 198 eIpLp~~P~Wf~~ 210 (367)
T KOG0835|consen 198 EIPLPFQPHWFKA 210 (367)
T ss_pred cCCCCCCccHHHH
Confidence 7 467654
No 12
>smart00385 CYCLIN domain present in cyclins, TFIIB and Retinoblastoma. A helical domain present in cyclins and TFIIB (twice) and Retinoblastoma (once). A protein recognition domain functioning in cell-cycle and transcription control.
Probab=97.99 E-value=1.5e-05 Score=49.57 Aligned_cols=43 Identities=37% Similarity=0.574 Sum_probs=39.8
Q ss_pred cHHHHHHHHHHHHHHhchhcccCcChHHHHHHHHHHHHHHhCC
Q 047159 84 DTKLEHLAFYLIELSLVQYEALKFKPSLLCASAIYVARCTLQM 126 (137)
Q Consensus 84 d~~~~~~a~yl~el~l~d~~~~~~~pS~iAaaai~lA~~~l~~ 126 (137)
+..+..+|.++++.++.+..+..++|+.+|+||+++|.++.+.
T Consensus 13 ~~~~~~~a~~~~~~~l~~~~~~~~~~~~ia~a~l~lA~k~~~~ 55 (83)
T smart00385 13 DPETLNLAVNLLDRFLSDYKFLKYSPSLIAAAALYLAAKTEEI 55 (83)
T ss_pred CHHHHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHhcC
Confidence 5678899999999999999999999999999999999999884
No 13
>KOG2496 consensus Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, cyclin H subunit [Cell cycle control, cell division, chromosome partitioning; Transcription; Replication, recombination and repair]
Probab=97.63 E-value=0.0002 Score=56.32 Aligned_cols=108 Identities=21% Similarity=0.252 Sum_probs=72.9
Q ss_pred CcHHHHHHHHH--hhhhhcccCchhhhhhHhhh-----chhhhhhhc---ccCCHHHHHHHHHHHHHHcCCcccccC---
Q 047159 16 ITPQMIGICHS--CQVHLKFDLMAETLYLMVTL-----SVKDLISIS---ETYTRDHMLRMEKLMLKKLKFRLNAAQ--- 82 (137)
Q Consensus 16 it~~mR~~Lvd--~~v~~~~~l~~eTl~LAV~l-----~~~~~~~~~---~~yt~~~i~~mE~~IL~~L~~~l~~~~--- 82 (137)
+...+|..|++ +++|-+- ....++|||..+ ++++|+.-. ..=+.+.++..|..+++.|+|+|..-.
T Consensus 83 ~~fFkRffL~nsvme~~pk~-I~~tc~flA~Kieef~ISieqFvkn~~~~~~k~~e~vLk~E~~llqsL~f~L~vh~PyR 161 (325)
T KOG2496|consen 83 IEFFKRFFLENSVMEYSPKI-IMATCFFLACKIEEFYISIEQFVKNMNGRKWKTHEIVLKYEFLLLQSLKFSLTVHNPYR 161 (325)
T ss_pred HHHHHHHHHhcchhhcChHH-HHHHHHHHHhhhHhheecHHHHHhhccCcccccHHHHHhchHHHHHhhhhhheecCCCC
Confidence 44567888888 6665542 345788888877 788887655 234789999999999999999999311
Q ss_pred ------------------ccHH-HHHHHHHHHHHHhchhcccCcChHHHHHHHHHHHHHHh
Q 047159 83 ------------------SDTK-LEHLAFYLIELSLVQYEALKFKPSLLCASAIYVARCTL 124 (137)
Q Consensus 83 ------------------~d~~-~~~~a~yl~el~l~d~~~~~~~pS~iAaaai~lA~~~l 124 (137)
.|.. .+....-+++-+++.--++-|+||+||.|||..|....
T Consensus 162 PleGFl~D~kt~l~~~~n~d~~~~~~d~~~fl~~~lltDa~lLytPsQIALaAil~a~~~~ 222 (325)
T KOG2496|consen 162 PLEGFLLDMKTRLPALENPDILRKHDDSKKFLDRALLTDAYLLYTPSQIALAAILHAAGRT 222 (325)
T ss_pred chHHHHHHHHHHHHhccCHHHHhhhhhHHHHHHHHHHhccceecChHHHHHHHHHHHhccc
Confidence 1111 11112233444555556777999999999996654333
No 14
>PRK00423 tfb transcription initiation factor IIB; Reviewed
Probab=97.28 E-value=0.0047 Score=49.04 Aligned_cols=99 Identities=16% Similarity=0.231 Sum_probs=74.8
Q ss_pred hhhhhcccCchhhhhhHhhh----------------------------------chhhhhhhcccCCHHHHHHHHHHHHH
Q 047159 27 CQVHLKFDLMAETLYLMVTL----------------------------------SVKDLISISETYTRDHMLRMEKLMLK 72 (137)
Q Consensus 27 ~~v~~~~~l~~eTl~LAV~l----------------------------------~~~~~~~~~~~yt~~~i~~mE~~IL~ 72 (137)
-+++..++|...+.=-|..+ +++|++.++ ..++.+|-+.++.|++
T Consensus 130 ~~~~~~L~Lp~~v~e~A~~iyk~~~~~~~~rgrs~~~i~AAclYiACR~~~~prtl~eI~~~~-~v~~k~i~~~~~~l~k 208 (310)
T PRK00423 130 DRIASQLGLPRSVREEAAVIYRKAVEKGLIRGRSIEGVVAAALYAACRRCKVPRTLDEIAEVS-RVSRKEIGRCYRFLLR 208 (310)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHHHHcCCCcCHHHHHHHh-CCCHHHHHHHHHHHHH
Confidence 46888888888877777777 455555544 3578899999999999
Q ss_pred HcCCcccccC-------------ccHHHHHHHHHHHHHHhchhcccCcChHHHHHHHHHHHHHHhCC
Q 047159 73 KLKFRLNAAQ-------------SDTKLEHLAFYLIELSLVQYEALKFKPSLLCASAIYVARCTLQM 126 (137)
Q Consensus 73 ~L~~~l~~~~-------------~d~~~~~~a~yl~el~l~d~~~~~~~pS~iAaaai~lA~~~l~~ 126 (137)
.|+.++.... .+..+...|..++.-+.-..-..+-+|..|||||||+|....+.
T Consensus 209 ~L~~~~~~~~p~~~i~r~~~~L~L~~~v~~~A~~i~~~a~~~~l~~Gr~P~sIAAAaIYlA~~~~g~ 275 (310)
T PRK00423 209 ELNLKLPPTDPIDYVPRFASELGLSGEVQKKAIEILQKAKEKGLTSGKGPTGLAAAAIYIASLLLGE 275 (310)
T ss_pred HhCCCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHHHHhCC
Confidence 9999887432 23467777888887664333346899999999999999887764
No 15
>cd00043 CYCLIN Cyclin box fold. Protein binding domain functioning in cell-cycle and transcription control. Present in cyclins, TFIIB and Retinoblastoma (RB).The cyclins consist of 8 classes of cell cycle regulators that regulate cyclin dependent kinases (CDKs). TFIIB is a transcription factor that binds the TATA box. Cyclins, TFIIB and RB contain 2 copies of the domain.
Probab=97.24 E-value=0.00096 Score=41.53 Aligned_cols=44 Identities=30% Similarity=0.412 Sum_probs=39.7
Q ss_pred ccHHHHHHHHHHHHHHhchhcccCcChHHHHHHHHHHHHHHhCC
Q 047159 83 SDTKLEHLAFYLIELSLVQYEALKFKPSLLCASAIYVARCTLQM 126 (137)
Q Consensus 83 ~d~~~~~~a~yl~el~l~d~~~~~~~pS~iAaaai~lA~~~l~~ 126 (137)
.+.....+|.++.+.++....+..++|+.+|+||+++|.++.+.
T Consensus 18 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ia~a~l~lA~k~~~~ 61 (88)
T cd00043 18 LSPETLTLAVNLLDRFLLDYSVLGRSPSLVAAAALYLAAKVEEI 61 (88)
T ss_pred CCHHHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHcCC
Confidence 35678889999999999999999999999999999999998774
No 16
>KOG0794 consensus CDK8 kinase-activating protein cyclin C [Transcription]
Probab=96.93 E-value=0.0012 Score=50.35 Aligned_cols=72 Identities=25% Similarity=0.328 Sum_probs=54.5
Q ss_pred ccCCHHHHHHHHHHHHHHcCCccccc--------------CccHHHHHHHHHHHHHHhchhcccCcChHHHHHHHHHHHH
Q 047159 56 ETYTRDHMLRMEKLMLKKLKFRLNAA--------------QSDTKLEHLAFYLIELSLVQYEALKFKPSLLCASAIYVAR 121 (137)
Q Consensus 56 ~~yt~~~i~~mE~~IL~~L~~~l~~~--------------~~d~~~~~~a~yl~el~l~d~~~~~~~pS~iAaaai~lA~ 121 (137)
..|...+|.+||..+|+.||+-|..- ..|.++..++..+..=++-..=.+-|||-+||.||+++|.
T Consensus 126 ~~~~~~~I~e~Ef~llE~Ld~~LIVhHPYrsL~q~~qd~gi~d~~~l~~~W~ivNDSyr~Dl~Ll~PPh~IalAcl~Ia~ 205 (264)
T KOG0794|consen 126 FPYERKDILEMEFYLLEALDCYLIVHHPYRSLLQFVQDMGINDQKLLQLAWSIVNDSYRMDLCLLYPPHQIALACLYIAC 205 (264)
T ss_pred cCCCcCcchhhhhhHHhhhceeEEEecCCccHHHHHHHhcccchhhhhhhHhhhcchhhcceeeecCHHHHHHHHHHHHH
Confidence 56778899999999999999999842 2345556666665554444333467999999999999999
Q ss_pred HHhCCC
Q 047159 122 CTLQMR 127 (137)
Q Consensus 122 ~~l~~~ 127 (137)
.+.+++
T Consensus 206 ~~~~k~ 211 (264)
T KOG0794|consen 206 VIDEKD 211 (264)
T ss_pred hhcCCC
Confidence 887753
No 17
>smart00385 CYCLIN domain present in cyclins, TFIIB and Retinoblastoma. A helical domain present in cyclins and TFIIB (twice) and Retinoblastoma (once). A protein recognition domain functioning in cell-cycle and transcription control.
Probab=96.33 E-value=0.0063 Score=37.36 Aligned_cols=25 Identities=40% Similarity=0.751 Sum_probs=18.3
Q ss_pred hhhhhhhcccCCHHHHHHHHHHHHH
Q 047159 48 VKDLISISETYTRDHMLRMEKLMLK 72 (137)
Q Consensus 48 ~~~~~~~~~~yt~~~i~~mE~~IL~ 72 (137)
..++...++.|+.+++.+||+.||.
T Consensus 59 ~~~~~~~~~~~~~~~i~~~~~~il~ 83 (83)
T smart00385 59 TKELVHYTGYFTEEEILRMEKLLLE 83 (83)
T ss_pred chhHhHhhCCCCHHHHHHHHHHHhC
Confidence 3455555533799999999999873
No 18
>cd00043 CYCLIN Cyclin box fold. Protein binding domain functioning in cell-cycle and transcription control. Present in cyclins, TFIIB and Retinoblastoma (RB).The cyclins consist of 8 classes of cell cycle regulators that regulate cyclin dependent kinases (CDKs). TFIIB is a transcription factor that binds the TATA box. Cyclins, TFIIB and RB contain 2 copies of the domain.
Probab=96.33 E-value=0.0059 Score=37.85 Aligned_cols=50 Identities=40% Similarity=0.523 Sum_probs=38.3
Q ss_pred HHHHHH--hhhhhcccCchhhhhhHhhh----------------------------------chhhhhhhcccC-CHHHH
Q 047159 21 IGICHS--CQVHLKFDLMAETLYLMVTL----------------------------------SVKDLISISETY-TRDHM 63 (137)
Q Consensus 21 R~~Lvd--~~v~~~~~l~~eTl~LAV~l----------------------------------~~~~~~~~~~~y-t~~~i 63 (137)
|...++ .+++..+++.++|.++|+.+ ..+++...+ .+ +.++|
T Consensus 2 ~~~~~~~l~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ia~a~l~lA~k~~~~~~~~~~~~~~~-~~~~~~~i 80 (88)
T cd00043 2 RPTPLDFLRRVAKALGLSPETLTLAVNLLDRFLLDYSVLGRSPSLVAAAALYLAAKVEEIPPWLKDLVHVT-GYATEEEI 80 (88)
T ss_pred cchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHcCCCCCHHHHhHHh-CCCCHHHH
Confidence 556677 78889999999999999988 334554444 34 89999
Q ss_pred HHHHHHHH
Q 047159 64 LRMEKLML 71 (137)
Q Consensus 64 ~~mE~~IL 71 (137)
.+||+.|+
T Consensus 81 ~~~e~~il 88 (88)
T cd00043 81 LRMEKLLL 88 (88)
T ss_pred HHHHHHhC
Confidence 99998874
No 19
>PF08613 Cyclin: Cyclin; InterPro: IPR013922 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs). Cyclins, together with the p34 (cdc2) or cdk2 kinases, form the Maturation Promoting Factor (MPF). There are two main groups of cyclins, G1/S cyclins, which are essential for the control of the cell cycle at the G1/S (start) transition, and G2/M cyclins, which are essential for the control of the cell cycle at the G2/M (mitosis) transition. G2/M cyclins accumulate steadily during G2 and are abruptly destroyed as cells exit from mitosis (at the end of the M-phase). In most species, there are multiple forms of G1 and G2 cyclins. For example, in vertebrates, there are two G2 cyclins, A and B, and at least three G1 cyclins, C, D, and E. Cyclin homologues have been found in various viruses, including Saimiriine herpesvirus 2 (Herpesvirus saimiri) and Human herpesvirus 8 (HHV-8) (Kaposi's sarcoma-associated herpesvirus). These viral homologues differ from their cellular counterparts in that the viral proteins have gained new functions and eliminated others to harness the cell and benefit the virus []. This entry includes cyclin PHO80 and other cyclins that partner with the cyclin-dependent kinase (CDK) PHO85. The PHO80/PHO85 cyclin-cdk complex is used for a regulatory process other than cell-cycle control []. This entry also includes other PHO80-like cyclins that are involved in the cell-cycle control. They belong to the P/U family and interact preferentially with CDKA1 [].; GO: 0019901 protein kinase binding, 0000079 regulation of cyclin-dependent protein kinase activity; PDB: 2PK9_D 2PMI_D.
Probab=95.19 E-value=0.051 Score=38.58 Aligned_cols=51 Identities=20% Similarity=0.235 Sum_probs=34.1
Q ss_pred hhhhhcccCchhhhhhHhhh----------------------------------------chhhhhhhcccCCHHHHHHH
Q 047159 27 CQVHLKFDLMAETLYLMVTL----------------------------------------SVKDLISISETYTRDHMLRM 66 (137)
Q Consensus 27 ~~v~~~~~l~~eTl~LAV~l----------------------------------------~~~~~~~~~~~yt~~~i~~m 66 (137)
.+++..-+++++++.+|.-| +-+.+..+ ++.+.+|+-+|
T Consensus 59 ~ri~~~~~~s~~~~i~aliYl~Rl~~~~~~~~~~~~~~~~~Rl~l~alilA~K~~~D~~~~n~~~a~v-~gis~~eln~l 137 (149)
T PF08613_consen 59 SRILKYTQCSPECLILALIYLDRLRQRSRKPNIPLNSSNIHRLFLTALILASKFLDDNTYSNKSWAKV-GGISLKELNEL 137 (149)
T ss_dssp HHHHHHTT--HHHHHHHHHHHHHHHH--H-TT---STTTHHHHHHHHHHHHHHHH-SS---HHHHHHH-HTS-HHHHHHH
T ss_pred HHHHHHcCCChHHHHHHHHHHHHHHHhhcccccccccchhHHHHHHHHHHHHhhcccccccHHHHHhh-cCCCHHHHHHH
Confidence 45667778888888888777 11122222 56799999999
Q ss_pred HHHHHHHcCCcc
Q 047159 67 EKLMLKKLKFRL 78 (137)
Q Consensus 67 E~~IL~~L~~~l 78 (137)
|+..|..|||+|
T Consensus 138 E~~fL~~l~~~L 149 (149)
T PF08613_consen 138 EREFLKLLDYNL 149 (149)
T ss_dssp HHHHHHHTTT--
T ss_pred HHHHHHHCCCcC
Confidence 999999999986
No 20
>PF00382 TFIIB: Transcription factor TFIIB repeat; InterPro: IPR013150 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs). Cyclins, together with the p34 (cdc2) or cdk2 kinases, form the Maturation Promoting Factor (MPF). There are two main groups of cyclins, G1/S cyclins, which are essential for the control of the cell cycle at the G1/S (start) transition, and G2/M cyclins, which are essential for the control of the cell cycle at the G2/M (mitosis) transition. G2/M cyclins accumulate steadily during G2 and are abruptly destroyed as cells exit from mitosis (at the end of the M-phase). In most species, there are multiple forms of G1 and G2 cyclins. For example, in vertebrates, there are two G2 cyclins, A and B, and at least three G1 cyclins, C, D, and E. Cyclin homologues have been found in various viruses, including Saimiriine herpesvirus 2 (Herpesvirus saimiri) and Human herpesvirus 8 (HHV-8) (Kaposi's sarcoma-associated herpesvirus). These viral homologues differ from their cellular counterparts in that the viral proteins have gained new functions and eliminated others to harness the cell and benefit the virus []. In eukaryotes, transcription initiation of all protein encoding genes involves the polymerase II system. This sytem is modulated by both general and specific transcription factors. The general factors (which include TFIIA, TFIIB, TFIID, TFIIE, TFIIF, TFIIG and TFIIH) operate through common promoter elements, such as the TATA box. Transcription factor IIB (TFIIB) is of central importance in transcription of class II genes. It associates with TFIID-TFIIA bound to DNA (the DA complex) to form a ternary TFIID-IIA-IBB (DAB) complex, which is recognised by RNA polymerase II [, ]. TFIIB comprises ~315-340 residues and contains an imperfect C-terminal repeat of a 75-residue domain that may contribute to the symmetry of the folded protein. The basal archaeal transcription machinery resembles that of the eukaryotic polymerase II system and includes a homologue of TFIIB []. This entry represents a cyclin-like domain which is found repeated in the C-terminal region of a variety of eukaryotic TFIIB's and their archaeal counterparts. These domains individually form the typical cyclin fold, and in the transcription complex they straddle the C-terminal region of the TATA-binding protein - an interaction essential for the formation of the transcription initiation complex [, ].; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 2PHG_A 1C9B_Q 1TFB_A 1VOL_A 3K7A_M 1AIS_B 1D3U_B.
Probab=92.79 E-value=0.61 Score=28.60 Aligned_cols=43 Identities=14% Similarity=0.029 Sum_probs=31.7
Q ss_pred cHHHHHHHHHHHHHHhchhcccCcChHHHHHHHHHHHHHHhCC
Q 047159 84 DTKLEHLAFYLIELSLVQYEALKFKPSLLCASAIYVARCTLQM 126 (137)
Q Consensus 84 d~~~~~~a~yl~el~l~d~~~~~~~pS~iAaaai~lA~~~l~~ 126 (137)
+..+...|..+...+.-..-.-+=+|..+||||+|+|....+.
T Consensus 11 ~~~v~~~A~~i~~~~~~~~~~~Gr~~~~iaAA~iY~acr~~~~ 53 (71)
T PF00382_consen 11 PEDVRERAKEIYKKAQERGLLKGRSPESIAAACIYLACRLNGV 53 (71)
T ss_dssp -HHHHHHHHHHHHHHHHTTTSTTS-HHHHHHHHHHHHHHHTTS
T ss_pred CHHHHHHHHHHHHHHHHcCCcccCCHHHHHHHHHHHHHHHcCC
Confidence 3467777888877665544456788999999999999988764
No 21
>COG1405 SUA7 Transcription initiation factor TFIIIB, Brf1 subunit/Transcription initiation factor TFIIB [Transcription]
Probab=91.31 E-value=2.5 Score=33.36 Aligned_cols=78 Identities=17% Similarity=0.252 Sum_probs=60.7
Q ss_pred chhhhhhhcccCCHHHHHHHHHHHHHHcCCccccc-------------CccHHHHHHHHHHHHHHhchhcccCcChHHHH
Q 047159 47 SVKDLISISETYTRDHMLRMEKLMLKKLKFRLNAA-------------QSDTKLEHLAFYLIELSLVQYEALKFKPSLLC 113 (137)
Q Consensus 47 ~~~~~~~~~~~yt~~~i~~mE~~IL~~L~~~l~~~-------------~~d~~~~~~a~yl~el~l~d~~~~~~~pS~iA 113 (137)
+++++....+ -++.+|-++.+.+...|+=.+... ..+..+...|..++..+.-.-.-..=.|+-+|
T Consensus 159 tl~eIa~a~~-V~~kei~rtyr~~~~~L~l~~~~~~p~~yi~rf~s~L~l~~~v~~~a~ei~~~~~~~g~~~Gk~P~glA 237 (285)
T COG1405 159 TLDEIAKALG-VSKKEIGRTYRLLVRELKLKIPPVDPSDYIPRFASKLGLSDEVRRKAIEIVKKAKRAGLTAGKSPAGLA 237 (285)
T ss_pred cHHHHHHHHC-CCHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCcccCCCchhHH
Confidence 4444444432 567999999999999888887732 23466777888888888776677899999999
Q ss_pred HHHHHHHHHHhC
Q 047159 114 ASAIYVARCTLQ 125 (137)
Q Consensus 114 aaai~lA~~~l~ 125 (137)
|||+|+|....+
T Consensus 238 aaaiy~as~l~~ 249 (285)
T COG1405 238 AAAIYLASLLLG 249 (285)
T ss_pred HHHHHHHHHHhC
Confidence 999999999887
No 22
>KOG1675 consensus Predicted cyclin [General function prediction only]
Probab=86.72 E-value=1.1 Score=35.80 Aligned_cols=48 Identities=25% Similarity=0.400 Sum_probs=36.8
Q ss_pred hhhhcccCCHHHHHHHHHHHHHHcCCcccccCccHHHHHHHHHHHHHH-hchhc
Q 047159 51 LISISETYTRDHMLRMEKLMLKKLKFRLNAAQSDTKLEHLAFYLIELS-LVQYE 103 (137)
Q Consensus 51 ~~~~~~~yt~~~i~~mE~~IL~~L~~~l~~~~~d~~~~~~a~yl~el~-l~d~~ 103 (137)
.+.++..-|++|+.+|||.+|.-|+|+++.+. ..+|.|+.++- |.+.+
T Consensus 259 ycqIlKd~tveDmNe~ERqfLelLqfNinvp~-----svYAKyYfdlr~Lae~n 307 (343)
T KOG1675|consen 259 YCEILKDQSVDDMNALERQFLELLQFNINVPS-----SEYAKYYFDLRCLAEAN 307 (343)
T ss_pred HHHHHhhccHhhHHHHHHHHHHHHhhccCccH-----HHHHHHHHHHhhhcccc
Confidence 34444556899999999999999999999754 45677888875 66654
No 23
>PF00134 Cyclin_N: Cyclin, N-terminal domain; InterPro: IPR006671 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs). Cyclins, together with the p34 (cdc2) or cdk2 kinases, form the Maturation Promoting Factor (MPF). There are two main groups of cyclins, G1/S cyclins, which are essential for the control of the cell cycle at the G1/S (start) transition, and G2/M cyclins, which are essential for the control of the cell cycle at the G2/M (mitosis) transition. G2/M cyclins accumulate steadily during G2 and are abruptly destroyed as cells exit from mitosis (at the end of the M-phase). In most species, there are multiple forms of G1 and G2 cyclins. For example, in vertebrates, there are two G2 cyclins, A and B, and at least three G1 cyclins, C, D, and E. Cyclin homologues have been found in various viruses, including Saimiriine herpesvirus 2 (Herpesvirus saimiri) and Human herpesvirus 8 (HHV-8) (Kaposi's sarcoma-associated herpesvirus). These viral homologues differ from their cellular counterparts in that the viral proteins have gained new functions and eliminated others to harness the cell and benefit the virus []. Cyclins contain two domains of similar all-alpha fold, of which this entry is associated with the N-terminal domain.; PDB: 2W2H_B 3RGF_B 1KXU_A 1JKW_A 1URC_D 2WMB_D 1H26_D 1GY3_B 2UUE_D 1E9H_D ....
Probab=73.29 E-value=14 Score=24.47 Aligned_cols=60 Identities=20% Similarity=0.271 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHcCCcccccCccHHHHHHHHHHHHHHhchhcccCcChHHHHHHHHHHHHHHhCC
Q 047159 60 RDHMLRMEKLMLKKLKFRLNAAQSDTKLEHLAFYLIELSLVQYEALKFKPSLLCASAIYVARCTLQM 126 (137)
Q Consensus 60 ~~~i~~mE~~IL~~L~~~l~~~~~d~~~~~~a~yl~el~l~d~~~~~~~pS~iAaaai~lA~~~l~~ 126 (137)
+..+..+=..+...++. +......|-++.+--+.........+..+|+||+++|.++-..
T Consensus 31 r~~~~~~i~~~~~~~~l-------~~~~~~~A~~~~dr~~~~~~~~~~~~~li~~~cl~lA~K~~e~ 90 (127)
T PF00134_consen 31 RQIIIDWIIELCQRLKL-------SPETLHLAIYLFDRFLSKRPVNRSKLQLIALACLFLASKMEED 90 (127)
T ss_dssp HHHHHHHHHHHHHHTT--------BHHHHHHHHHHHHHHHTTS-TTCCGHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHhccc-------chhHHHHHHHHHHHHHhhcccccchhhhhhhhHHHHhhhhhcc
Confidence 34444444444444433 4455666666767666666678899999999999999998754
No 24
>TIGR00569 ccl1 cyclin ccl1. University).
Probab=63.22 E-value=14 Score=29.43 Aligned_cols=24 Identities=8% Similarity=0.378 Sum_probs=19.3
Q ss_pred hhcccCcChHHHHHHHHHHHHHHh
Q 047159 101 QYEALKFKPSLLCASAIYVARCTL 124 (137)
Q Consensus 101 d~~~~~~~pS~iAaaai~lA~~~l 124 (137)
...+..|.|..||++|+++|.+.=
T Consensus 92 ~~Sv~~~~p~~Ia~tclfLA~KvE 115 (305)
T TIGR00569 92 NNSVMEYHPKIIMLTCVFLACKVE 115 (305)
T ss_pred cCchhhcCHHHHHHHHHHHHHhcc
Confidence 445667899999999999998754
No 25
>KOG0834 consensus CDK9 kinase-activating protein cyclin T [Cell cycle control, cell division, chromosome partitioning]
Probab=39.32 E-value=33 Score=27.68 Aligned_cols=24 Identities=25% Similarity=0.325 Sum_probs=19.7
Q ss_pred hcccCcChHHHHHHHHHHHHHHhC
Q 047159 102 YEALKFKPSLLCASAIYVARCTLQ 125 (137)
Q Consensus 102 ~~~~~~~pS~iAaaai~lA~~~l~ 125 (137)
+.|-.|.|-.+|++|+++|-+.=.
T Consensus 74 ~s~~~~~~~~vA~sclfLAgKvEe 97 (323)
T KOG0834|consen 74 HSFKKFDPYTVAASCLFLAGKVEE 97 (323)
T ss_pred cccccCcHHHHHHHHHHHHhhccc
Confidence 456778899999999999988644
No 26
>KOG1597 consensus Transcription initiation factor TFIIB [Transcription]
Probab=33.56 E-value=2.5e+02 Score=22.52 Aligned_cols=68 Identities=16% Similarity=0.130 Sum_probs=48.2
Q ss_pred ccCCHHHHHHHHHHHHHHcCCccccc---------------CccHHHHHHHHHHHHHHhchhcc-cCcChHHHHHHHHHH
Q 047159 56 ETYTRDHMLRMEKLMLKKLKFRLNAA---------------QSDTKLEHLAFYLIELSLVQYEA-LKFKPSLLCASAIYV 119 (137)
Q Consensus 56 ~~yt~~~i~~mE~~IL~~L~~~l~~~---------------~~d~~~~~~a~yl~el~l~d~~~-~~~~pS~iAaaai~l 119 (137)
+ -+++||-+.=+.|+..|.=.+... ..+......|-...+-+-- ..+ ..=.|=.||||+||+
T Consensus 175 n-v~kKEIgr~~K~i~~~l~~s~~~~s~~t~~~m~RFCs~L~L~~~~q~aA~e~a~ka~~-~~~~~gRsPiSIAAa~IYm 252 (308)
T KOG1597|consen 175 N-VSKKEIGRCVKLIGEALETSVDLISISTGDFMPRFCSNLGLPKSAQEAATEIAEKAEE-MDIRAGRSPISIAAAAIYM 252 (308)
T ss_pred c-CCHHHHHHHHHHHHHHHhccchhhhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH-hccccCCCchhHHHHHHHH
Confidence 5 889999999999999987666632 1234556666666665432 233 347799999999999
Q ss_pred HHHHhC
Q 047159 120 ARCTLQ 125 (137)
Q Consensus 120 A~~~l~ 125 (137)
+.....
T Consensus 253 isqls~ 258 (308)
T KOG1597|consen 253 ISQLSD 258 (308)
T ss_pred HHHhcc
Confidence 887655
No 27
>PRK00423 tfb transcription initiation factor IIB; Reviewed
Probab=32.86 E-value=1.5e+02 Score=23.43 Aligned_cols=42 Identities=12% Similarity=-0.009 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHhchhcccCcChHHHHHHHHHHHHHHhCC
Q 047159 85 TKLEHLAFYLIELSLVQYEALKFKPSLLCASAIYVARCTLQM 126 (137)
Q Consensus 85 ~~~~~~a~yl~el~l~d~~~~~~~pS~iAaaai~lA~~~l~~ 126 (137)
..+..-|..+...+.-...+-...+..+||||+|+|.+.-+.
T Consensus 140 ~~v~e~A~~iyk~~~~~~~~rgrs~~~i~AAclYiACR~~~~ 181 (310)
T PRK00423 140 RSVREEAAVIYRKAVEKGLIRGRSIEGVVAAALYAACRRCKV 181 (310)
T ss_pred HHHHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHHHHcCC
Confidence 445555666655554443456789999999999999887664
No 28
>PF09080 K-cyclin_vir_C: K cyclin, C terminal; InterPro: IPR015164 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs). Cyclins, together with the p34 (cdc2) or cdk2 kinases, form the Maturation Promoting Factor (MPF). There are two main groups of cyclins, G1/S cyclins, which are essential for the control of the cell cycle at the G1/S (start) transition, and G2/M cyclins, which are essential for the control of the cell cycle at the G2/M (mitosis) transition. G2/M cyclins accumulate steadily during G2 and are abruptly destroyed as cells exit from mitosis (at the end of the M-phase). In most species, there are multiple forms of G1 and G2 cyclins. For example, in vertebrates, there are two G2 cyclins, A and B, and at least three G1 cyclins, C, D, and E. Cyclin homologues have been found in various viruses, including Saimiriine herpesvirus 2 (Herpesvirus saimiri) and Human herpesvirus 8 (HHV-8) (Kaposi's sarcoma-associated herpesvirus). These viral homologues differ from their cellular counterparts in that the viral proteins have gained new functions and eliminated others to harness the cell and benefit the virus []. This domain adopts a secondary structure consisting of a five alpha-helix cyclin fold. Interaction with cyclin dependent kinases (CDKs) at a PSTAIRE sequence motif within the catalytic cleft of CDK results in the regulation of CDK activity []. ; PDB: 1G3N_C.
Probab=31.85 E-value=99 Score=20.29 Aligned_cols=26 Identities=19% Similarity=0.275 Sum_probs=19.7
Q ss_pred HHHHHhchhcccCcChHHHHHH-HHHH
Q 047159 94 LIELSLVQYEALKFKPSLLCAS-AIYV 119 (137)
Q Consensus 94 l~el~l~d~~~~~~~pS~iAaa-ai~l 119 (137)
+..-++.|..--..+||.+||| |-++
T Consensus 32 ~v~KAiV~P~TG~Lp~SlvaAA~CAL~ 58 (106)
T PF09080_consen 32 SVHKAIVNPKTGGLPPSLVAAAGCALF 58 (106)
T ss_dssp HHHHHHCSTTGGGS-HHHHHHHHHHHH
T ss_pred HHHHHhcCcccCCCCHHHHHHhhhhhc
Confidence 3445789999999999999998 4444
No 29
>PF01527 HTH_Tnp_1: Transposase; InterPro: IPR002514 Transposase proteins are necessary for efficient DNA transposition. This family consists of various Escherichia coli insertion elements and other bacterial transposases some of which are members of the IS3 family. This region includes a helix-turn-helix motif (HTH) at the N terminus followed by a leucine zipper (LZ) motif. The LZ motif has been shown to mediate oligomerisation of the transposase components in IS911 []. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated; PDB: 2JN6_A 2RN7_A.
Probab=30.56 E-value=57 Score=19.50 Aligned_cols=29 Identities=17% Similarity=0.265 Sum_probs=18.1
Q ss_pred CCCcHHHHHHHHH---------hhhhhcccCchhhhhh
Q 047159 14 TDITPQMIGICHS---------CQVHLKFDLMAETLYL 42 (137)
Q Consensus 14 ~~it~~mR~~Lvd---------~~v~~~~~l~~eTl~L 42 (137)
+..|+.-+..+|. .+|+..+|+++.||+-
T Consensus 5 ~~ys~e~K~~~v~~~~~~g~sv~~va~~~gi~~~~l~~ 42 (76)
T PF01527_consen 5 RRYSPEFKLQAVREYLESGESVSEVAREYGISPSTLYN 42 (76)
T ss_dssp ----HHHHHHHHHHHHHHHCHHHHHHHHHTS-HHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCCCceEeeecccccccccccH
Confidence 3466666666666 4788899998888874
No 30
>PRK12542 RNA polymerase sigma factor; Provisional
Probab=27.93 E-value=88 Score=22.14 Aligned_cols=56 Identities=4% Similarity=0.073 Sum_probs=34.8
Q ss_pred CCcHHHHHHHHH--------hhhhhcccCchhhhhhHhhhchhhhhhhcccCCHHHHHHHHHHH
Q 047159 15 DITPQMIGICHS--------CQVHLKFDLMAETLYLMVTLSVKDLISISETYTRDHMLRMEKLM 70 (137)
Q Consensus 15 ~it~~mR~~Lvd--------~~v~~~~~l~~eTl~LAV~l~~~~~~~~~~~yt~~~i~~mE~~I 70 (137)
.++|..|.+++- -++...+++++.|..-.+.-....+-..-..+..+++..||+.|
T Consensus 122 ~L~~~~r~i~~l~~~~g~s~~EIA~~lgis~~tVk~~l~Rar~~Lr~~l~~~~~~~~~~~~~~~ 185 (185)
T PRK12542 122 ELNESNRQVFKYKVFYNLTYQEISSVMGITEANVRKQFERARKRVQNMIGGIQHDEFKELQRNI 185 (185)
T ss_pred hCCHHHHHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHcccchHHHHHHhcCC
Confidence 356677776653 46777788887777665544222222211677888888888653
No 31
>PF13011 LZ_Tnp_IS481: leucine-zipper of insertion element IS481
Probab=27.19 E-value=99 Score=19.98 Aligned_cols=30 Identities=17% Similarity=0.155 Sum_probs=24.0
Q ss_pred CCcHHHHHHHHH---------hhhhhcccCchhhhhhHh
Q 047159 15 DITPQMIGICHS---------CQVHLKFDLMAETLYLMV 44 (137)
Q Consensus 15 ~it~~mR~~Lvd---------~~v~~~~~l~~eTl~LAV 44 (137)
-+||.-|..||. .+++..|++++.|.+-=+
T Consensus 8 ~Lt~~gR~~lv~~vv~~g~~~a~aA~~~gVS~~Ta~kW~ 46 (85)
T PF13011_consen 8 RLTPRGRLRLVRRVVEQGWPVAHAAAEFGVSRRTAYKWL 46 (85)
T ss_pred CCCHHHHHHHHHHHHHcCCcHHHHHHHhCCCHHHHHHHH
Confidence 489999998876 468899999999887533
No 32
>KOG4164 consensus Cyclin ik3-1/CABLES [Cell cycle control, cell division, chromosome partitioning]
Probab=22.31 E-value=1.2e+02 Score=25.45 Aligned_cols=25 Identities=24% Similarity=0.389 Sum_probs=21.9
Q ss_pred cCCHHHHHHHHHHHHHHcCCccccc
Q 047159 57 TYTRDHMLRMEKLMLKKLKFRLNAA 81 (137)
Q Consensus 57 ~yt~~~i~~mE~~IL~~L~~~l~~~ 81 (137)
.+.+.|++..|.-||.+|.|.|..+
T Consensus 458 R~nrrdLia~Ef~VlvaLefaL~~~ 482 (497)
T KOG4164|consen 458 RLNRRDLIAFEFPVLVALEFALHLP 482 (497)
T ss_pred cccHHhhhhhhhhHHHhhhhhccCC
Confidence 4578899999999999999999864
No 33
>KOG0487 consensus Transcription factor Abd-B, contains HOX domain [Transcription]
Probab=21.01 E-value=80 Score=25.36 Aligned_cols=16 Identities=38% Similarity=0.582 Sum_probs=14.5
Q ss_pred ccCCHHHHHHHHHHHH
Q 047159 56 ETYTRDHMLRMEKLML 71 (137)
Q Consensus 56 ~~yt~~~i~~mE~~IL 71 (137)
+.||+.|++++|++-|
T Consensus 240 cPYTK~QtlELEkEFl 255 (308)
T KOG0487|consen 240 CPYTKHQTLELEKEFL 255 (308)
T ss_pred CCchHHHHHHHHHHHH
Confidence 6899999999999876
No 34
>COG3426 Butyrate kinase [Energy production and conversion]
Probab=20.33 E-value=90 Score=25.17 Aligned_cols=18 Identities=28% Similarity=0.624 Sum_probs=15.2
Q ss_pred chhhhhhhc--ccCCHHHHH
Q 047159 47 SVKDLISIS--ETYTRDHML 64 (137)
Q Consensus 47 ~~~~~~~~~--~~yt~~~i~ 64 (137)
...|++.+| +.||.+|++
T Consensus 220 P~~dlv~lcfSgk~t~~El~ 239 (358)
T COG3426 220 PTGDLVRLCFSGKYTEEELL 239 (358)
T ss_pred ChHHHHHHHhcCcccHHHHH
Confidence 567899999 899988876
Done!