Query 047159
Match_columns 137
No_of_seqs 167 out of 1116
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 14:19:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047159.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047159hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2f2c_A Cyclin homolog, V-cycli 100.0 4.8E-30 1.7E-34 195.8 13.3 124 2-125 32-211 (254)
2 2b9r_A Human cyclin B1; cell c 100.0 1.1E-29 3.9E-34 195.4 13.6 133 2-135 20-211 (269)
3 2cch_B Cyclin A2, cyclin-A; co 100.0 1E-29 3.5E-34 194.6 11.7 124 3-126 21-197 (260)
4 3g33_B CCND3 protein; Ser/Thr 100.0 1.6E-29 5.5E-34 198.0 10.8 125 2-126 51-231 (306)
5 1g3n_C V-cyclin; cyclin-depend 100.0 1.3E-29 4.6E-34 193.7 8.9 124 2-125 31-210 (257)
6 1w98_B Cyclin E, G1/S-specific 99.9 2E-27 6.9E-32 184.1 10.5 133 2-134 31-227 (283)
7 1f5q_B Gamma herpesvirus cycli 99.9 1.1E-27 3.8E-32 183.1 6.2 112 10-121 38-204 (252)
8 2w96_A G1/S-specific cyclin-D1 99.9 8E-27 2.7E-31 179.5 10.5 124 2-125 37-216 (271)
9 2i53_A Cyclin K; cell cycle, t 99.8 2.3E-20 7.7E-25 142.1 9.5 120 7-126 26-211 (258)
10 2ivx_A Cyclin-T2; transcriptio 99.8 1.3E-18 4.5E-23 132.4 9.0 110 16-125 26-202 (257)
11 3rgf_B Cyclin-C; protein kinas 99.7 1.4E-17 4.8E-22 128.9 10.8 108 19-126 41-213 (285)
12 1zp2_A RNA polymerase II holoe 99.7 5.6E-17 1.9E-21 122.1 13.1 111 15-126 23-190 (235)
13 2pk2_A Cyclin-T1, protein TAT; 99.7 6.3E-18 2.2E-22 134.7 5.2 110 16-125 33-209 (358)
14 1jkw_A Cyclin H; cell cycle, c 99.6 1.8E-15 6E-20 119.0 11.0 113 15-127 47-227 (323)
15 1c9b_A General transcription f 99.3 3.5E-11 1.2E-15 88.5 12.3 100 27-127 13-159 (207)
16 1ais_B TFB TFIIB, protein (tra 98.9 1.5E-08 5.1E-13 73.9 11.2 99 27-126 17-164 (200)
17 3k7a_M Transcription initiatio 98.0 3.9E-06 1.3E-10 66.2 3.7 99 27-126 134-291 (345)
18 4bbr_M Transcription initiatio 95.0 0.015 5.1E-07 45.8 3.2 99 27-126 134-291 (345)
19 2pmi_B PHO85 cyclin PHO80, ami 89.6 0.51 1.7E-05 36.3 5.0 26 56-81 148-173 (293)
20 1zp2_A RNA polymerase II holoe 77.0 4.8 0.00016 29.1 5.4 42 84-125 45-87 (235)
21 1c9b_A General transcription f 75.8 5.8 0.0002 28.0 5.5 41 85-125 23-63 (207)
22 1ais_B TFB TFIIB, protein (tra 75.8 8.7 0.0003 26.9 6.4 42 85-126 27-68 (200)
23 2ivx_A Cyclin-T2; transcriptio 72.8 7.7 0.00026 28.3 5.7 42 84-125 48-89 (257)
24 2i53_A Cyclin K; cell cycle, t 71.9 8.4 0.00029 28.1 5.7 42 84-125 58-99 (258)
25 3rgf_B Cyclin-C; protein kinas 69.1 9.1 0.00031 28.7 5.4 41 85-125 61-101 (285)
26 1jkw_A Cyclin H; cell cycle, c 68.9 11 0.00036 28.9 5.9 43 83-125 75-117 (323)
27 2pk2_A Cyclin-T1, protein TAT; 68.4 10 0.00034 29.6 5.7 42 84-125 55-96 (358)
28 2keb_A DNA polymerase subunit 62.4 11 0.00037 24.3 3.9 50 16-73 40-95 (101)
29 2wh0_Q Pkcev3, protein kinase 61.6 7 0.00024 19.1 2.3 18 60-77 12-29 (31)
30 2b9r_A Human cyclin B1; cell c 42.2 48 0.0017 24.3 5.4 41 85-125 56-96 (269)
31 4bbr_M Transcription initiatio 39.9 73 0.0025 24.5 6.2 43 84-126 143-185 (345)
32 2f2c_A Cyclin homolog, V-cycli 38.8 50 0.0017 23.9 4.9 40 86-125 71-110 (254)
33 2w96_A G1/S-specific cyclin-D1 36.2 56 0.0019 23.9 4.9 38 88-125 78-115 (271)
34 2cch_B Cyclin A2, cyclin-A; co 35.3 44 0.0015 24.3 4.1 40 86-125 58-97 (260)
35 1g3n_C V-cyclin; cyclin-depend 34.9 50 0.0017 23.9 4.4 42 84-125 68-109 (257)
36 3g33_B CCND3 protein; Ser/Thr 31.5 59 0.002 24.4 4.4 38 88-125 92-129 (306)
37 1w98_B Cyclin E, G1/S-specific 22.0 1.6E+02 0.0054 21.6 5.2 40 86-125 69-109 (283)
No 1
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A
Probab=99.97 E-value=4.8e-30 Score=195.83 Aligned_cols=124 Identities=25% Similarity=0.275 Sum_probs=111.1
Q ss_pred CCCCCCCccc-cCCCCcHHHHHHHHH--hhhhhcccCchhhhhhHhhh--------------------------------
Q 047159 2 LLPPMENFMS-NQTDITPQMIGICHS--CQVHLKFDLMAETLYLMVTL-------------------------------- 46 (137)
Q Consensus 2 ~~~~~~~yl~-~q~~it~~mR~~Lvd--~~v~~~~~l~~eTl~LAV~l-------------------------------- 46 (137)
...|.++||+ .|++|+++||.++|| ++||.+|++.++|+|+||+|
T Consensus 32 ~~~p~~~y~~~~q~~i~~~~R~~lvdwl~~v~~~~~l~~etl~lAv~~~DRfls~~~v~~~~lqLv~~acl~iA~K~eE~ 111 (254)
T 2f2c_A 32 LLLPKFTSLWEIQTEVTVDNRTILLTWMHLLCESFELDKSVFPLSVSILDRYLCKKQGTKKTLQKIGAACVLIGSKIRTV 111 (254)
T ss_dssp TTSCCCSSTTTTCSSCCHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHTTTSCCCTTTHHHHHHHHHHHHHHHHCS
T ss_pred hhCCCchhhhhcCccCCHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHccCCcCHHHccHHHHHHHHHHHHhccc
Confidence 4678999997 899999999999999 99999999999999999999
Q ss_pred ---chhhhhhhc-ccCCHHHHHHHHHHHHHHcCCcccccCc-------------c----HHHHHHHHHHHHHHhchhccc
Q 047159 47 ---SVKDLISIS-ETYTRDHMLRMEKLMLKKLKFRLNAAQS-------------D----TKLEHLAFYLIELSLVQYEAL 105 (137)
Q Consensus 47 ---~~~~~~~~~-~~yt~~~i~~mE~~IL~~L~~~l~~~~~-------------d----~~~~~~a~yl~el~l~d~~~~ 105 (137)
+++||+++| +.|++++|.+||+.||++|+|+++.+++ + ..++..|.|++++++.|+.|+
T Consensus 112 ~~p~~~d~~~~~~~~~~~~~i~~mE~~IL~~L~~~l~~~tp~~fl~~~~~~~~~~~~~~~~~~~~a~~ll~~~l~d~~~~ 191 (254)
T 2f2c_A 112 KPMTVSKLTYLSCDCFTNLELINQEKDILEALKWDTEAVLATDFLIPLCNALKIPEDLWPQLYEAASTTICKALIQPNIA 191 (254)
T ss_dssp SCCCHHHHSTTC---CCHHHHHHHHHHHHHHTTTCCCCCCGGGSHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSGGGT
T ss_pred CCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHCCCcCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHcCcchh
Confidence 678999999 9999999999999999999999995432 1 124678999999999999999
Q ss_pred CcChHHHHHHHHHHHHHHhC
Q 047159 106 KFKPSLLCASAIYVARCTLQ 125 (137)
Q Consensus 106 ~~~pS~iAaaai~lA~~~l~ 125 (137)
.|+||.|||||+++|+...+
T Consensus 192 ~~~PS~iAaAai~la~~~~~ 211 (254)
T 2f2c_A 192 LLSPGLICAGGLLTTIETDN 211 (254)
T ss_dssp TSCHHHHHHHHHHHHHHTTC
T ss_pred ccCHHHHHHHHHHHHHHhcC
Confidence 99999999999999999874
No 2
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*
Probab=99.96 E-value=1.1e-29 Score=195.38 Aligned_cols=133 Identities=30% Similarity=0.539 Sum_probs=121.1
Q ss_pred CCCCCCCccccCCCCcHHHHHHHHH--hhhhhcccCchhhhhhHhhh---------------------------------
Q 047159 2 LLPPMENFMSNQTDITPQMIGICHS--CQVHLKFDLMAETLYLMVTL--------------------------------- 46 (137)
Q Consensus 2 ~~~~~~~yl~~q~~it~~mR~~Lvd--~~v~~~~~l~~eTl~LAV~l--------------------------------- 46 (137)
..+|+++||+.| +|+++||.+++| ++||.+|++.++|+++||++
T Consensus 20 ~~~~~~~y~~~q-~i~~~~R~~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfl~~~~v~~~~lqlv~~acL~iA~K~eE~~ 98 (269)
T 2b9r_A 20 AQAVRPKYLLGR-EVTGNMRAILIDWLVQVQMKFRLLQETMYMTVSIIDRFMQNNSVPKKMLQLVGVTAMFIASKYEEMY 98 (269)
T ss_dssp TTCCCTTTTSSS-SSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTSCCCGGGHHHHHHHHHHHHHHHHCSS
T ss_pred hhCCCcccccCC-CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCcHHHhhHHHHHHHHHHHhccccc
Confidence 357889999988 999999999999 99999999999999999999
Q ss_pred --chhhhhhhc-ccCCHHHHHHHHHHHHHHcCCccccc-------------CccHHHHHHHHHHHHHHhchhcccCcChH
Q 047159 47 --SVKDLISIS-ETYTRDHMLRMEKLMLKKLKFRLNAA-------------QSDTKLEHLAFYLIELSLVQYEALKFKPS 110 (137)
Q Consensus 47 --~~~~~~~~~-~~yt~~~i~~mE~~IL~~L~~~l~~~-------------~~d~~~~~~a~yl~el~l~d~~~~~~~pS 110 (137)
+++|++.++ +.|++++|.+||+.||++|+|+++.+ ..+..++.+|.|++++++.|+.|++|+||
T Consensus 99 ~p~~~d~~~~~~~~~~~~eI~~mE~~IL~~L~f~l~~~tp~~fl~~~~~~~~~~~~~~~~a~~l~e~sl~~~~~~~~~Ps 178 (269)
T 2b9r_A 99 PPEIGDFAFVTDNTYTKHQIRQMEMKILRALNFGLGRPLPLHFLRRASKIGEVDVEQHTLAKYLMELTMLDYDMVHFPPS 178 (269)
T ss_dssp CCCHHHHHHHTCSSSCHHHHHHHHHHHHHHTTSCCCCCCHHHHHHHHHHSSCCCHHHHHHHHHHHHHGGGCGGGSSSCTT
T ss_pred CccHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCccCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhhhhcCCHH
Confidence 578999999 99999999999999999999999954 34567889999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCC--------CCCCCcccc
Q 047159 111 LLCASAIYVARCTLQM--------RYTSYIVDA 135 (137)
Q Consensus 111 ~iAaaai~lA~~~l~~--------~~~~y~~~~ 135 (137)
.|||||+++|+.+++. +++||++++
T Consensus 179 ~iAaAai~lA~~~l~~~~w~~~l~~~tg~~~~~ 211 (269)
T 2b9r_A 179 QIAAGAFSLALKILDNGEWTPTLQHYLSYTEES 211 (269)
T ss_dssp HHHHHHHHHHHHHHTCCCSCTTHHHHSCCCSST
T ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHHCCCHHH
Confidence 9999999999999984 356787654
No 3
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ...
Probab=99.96 E-value=1e-29 Score=194.61 Aligned_cols=124 Identities=38% Similarity=0.556 Sum_probs=114.9
Q ss_pred CCCCCCccccCCCCcHHHHHHHHH--hhhhhcccCchhhhhhHhhh----------------------------------
Q 047159 3 LPPMENFMSNQTDITPQMIGICHS--CQVHLKFDLMAETLYLMVTL---------------------------------- 46 (137)
Q Consensus 3 ~~~~~~yl~~q~~it~~mR~~Lvd--~~v~~~~~l~~eTl~LAV~l---------------------------------- 46 (137)
.+|.++||+.|++|++.||.++|| ++|+.+|++.++|+++||++
T Consensus 21 ~~p~~~y~~~q~~i~~~~R~~lvdwl~~v~~~~~l~~~tl~lAv~~lDRfls~~~v~~~~lqlv~~acl~iA~K~ee~~~ 100 (260)
T 2cch_B 21 CKPKVGYMKKQPDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYP 100 (260)
T ss_dssp TCCCTTGGGGCSSCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCSSC
T ss_pred cCCCchhhhcCCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccCCCCHHHHhHHHHHHHHHHHHhcccCC
Confidence 578899999999999999999999 99999999999999999999
Q ss_pred -chhhhhhhc-ccCCHHHHHHHHHHHHHHcCCcccccC--------------ccHHHHHHHHHHHHHHhchhc-ccCcCh
Q 047159 47 -SVKDLISIS-ETYTRDHMLRMEKLMLKKLKFRLNAAQ--------------SDTKLEHLAFYLIELSLVQYE-ALKFKP 109 (137)
Q Consensus 47 -~~~~~~~~~-~~yt~~~i~~mE~~IL~~L~~~l~~~~--------------~d~~~~~~a~yl~el~l~d~~-~~~~~p 109 (137)
+++|++.++ +.|++++|.+||+.||++|+|+++.++ .+..+..+|.|++|+++.|+. |++|+|
T Consensus 101 ~~~~d~~~i~~~~~~~~~i~~mE~~iL~~L~~~l~~~tp~~fl~~~~~~l~~~~~~~~~~a~~l~e~sl~~~~~~~~~~P 180 (260)
T 2cch_B 101 PEVAEFVYITDDTYTKKQVLRMEHLVLKVLTFDLAAPTVNQFLTQYFLHQQPANCKVESLAMFLGELSLIDADPYLKYLP 180 (260)
T ss_dssp CCHHHHHHHTTSSSCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHCHHHHTTSCH
T ss_pred CCHHHHHHHHcCCcCHHHHHHHHHHHHHHcCCccCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhHHHHhCCCH
Confidence 678899999 999999999999999999999999542 223788999999999999999 999999
Q ss_pred HHHHHHHHHHHHHHhCC
Q 047159 110 SLLCASAIYVARCTLQM 126 (137)
Q Consensus 110 S~iAaaai~lA~~~l~~ 126 (137)
|.|||||+++|+..++.
T Consensus 181 s~iAaAai~lA~~~~~~ 197 (260)
T 2cch_B 181 SVIAGAAFHLALYTVTG 197 (260)
T ss_dssp HHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHhCC
Confidence 99999999999999874
No 4
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=99.96 E-value=1.6e-29 Score=197.96 Aligned_cols=125 Identities=21% Similarity=0.272 Sum_probs=113.5
Q ss_pred CCCCCCCccc-cCCCCcHHHHHHHHH--hhhhhcccCchhhhhhHhhh--------------------------------
Q 047159 2 LLPPMENFMS-NQTDITPQMIGICHS--CQVHLKFDLMAETLYLMVTL-------------------------------- 46 (137)
Q Consensus 2 ~~~~~~~yl~-~q~~it~~mR~~Lvd--~~v~~~~~l~~eTl~LAV~l-------------------------------- 46 (137)
+.+|.++|++ .|++|++.||.++|| ++||.+|++.++|+|+||+|
T Consensus 51 ~~~p~~~y~~~~q~~i~~~~R~~lvdwl~ev~~~~~l~~~t~~lAv~~lDRfls~~~v~~~~lqLv~~tcL~lAsK~eE~ 130 (306)
T 3g33_B 51 RYVPRASYFQCVQREIKPHMRKMLAYWMLEVCEEQRCEEEVFPLAMNYLDRYLSCVPTRKAQLQLLGAVCMLLASKLRET 130 (306)
T ss_dssp GGSCSSCCTTTSTTTCCHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHCCCCGGGHHHHHHHHHHHHHHHHCS
T ss_pred HhCCCcHHHhhcCccCCHHHHHHHHHHHHHHHHHhCCcHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccC
Confidence 4579999998 799999999999999 99999999999999999999
Q ss_pred ---chhhhhhhc-ccCCHHHHHHHHHHHHHHcCCcccccCc---------------c--HHHHHHHHHHHHHHhchhccc
Q 047159 47 ---SVKDLISIS-ETYTRDHMLRMEKLMLKKLKFRLNAAQS---------------D--TKLEHLAFYLIELSLVQYEAL 105 (137)
Q Consensus 47 ---~~~~~~~~~-~~yt~~~i~~mE~~IL~~L~~~l~~~~~---------------d--~~~~~~a~yl~el~l~d~~~~ 105 (137)
++++|++++ +.|++++|++||+.||++|+|+++.+++ + ..++..|.|++++++.|+.|+
T Consensus 131 ~p~~~~~l~~~~~~~~~~~~i~~mE~~IL~~L~f~l~~~tp~~fl~~~l~~l~~~~~~~~~~~~~a~~~l~lsl~d~~~l 210 (306)
T 3g33_B 131 TPLTIEKLCIYTDHAVSPRQLRDWEVLVLGKLKWDLAAVIAHDFLAFILHRLSLPRDRQALVKKHAQTFLALCATDYTFA 210 (306)
T ss_dssp SCCCTTHHHHHTTTSSCHHHHHHHHHHHHHHTTTCCCCCCGGGGHHHHHHTSSCCTTTHHHHHHHHHHHHHHHHHCGGGT
T ss_pred CCCCHHHHHHHhccCccHHHHHHHHHHHHHHcCCccCCCCHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHhhhhhc
Confidence 677899999 9999999999999999999999995432 1 235678999999999999999
Q ss_pred CcChHHHHHHHHHHHHHHhCC
Q 047159 106 KFKPSLLCASAIYVARCTLQM 126 (137)
Q Consensus 106 ~~~pS~iAaaai~lA~~~l~~ 126 (137)
.|+||.|||||+++|+..++.
T Consensus 211 ~~~PS~IAaAai~lA~~~l~~ 231 (306)
T 3g33_B 211 MYPPSMIATGSIGAAVQGLGA 231 (306)
T ss_dssp TSCHHHHHHHHHHHHHHTCC-
T ss_pred cCCHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999974
No 5
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1
Probab=99.96 E-value=1.3e-29 Score=193.66 Aligned_cols=124 Identities=19% Similarity=0.239 Sum_probs=112.9
Q ss_pred CCCCCCCccc-cCCCCcHHHHHHHHH--hhhhhcccCchhhhhhHhhh--------------------------------
Q 047159 2 LLPPMENFMS-NQTDITPQMIGICHS--CQVHLKFDLMAETLYLMVTL-------------------------------- 46 (137)
Q Consensus 2 ~~~~~~~yl~-~q~~it~~mR~~Lvd--~~v~~~~~l~~eTl~LAV~l-------------------------------- 46 (137)
...|.++|+. .|++|+++||.++|| ++||.+|++.++|+|+||+|
T Consensus 31 ~~~p~~~y~~~~q~~i~~~~R~~lvdwl~ev~~~~~l~~etl~lAv~~~DRfls~~~v~~~~lqLv~~acl~iA~K~eE~ 110 (257)
T 1g3n_C 31 RFLTSDSVFGTFQQSLTSHMRKLLGTWMFSVCQEYNLEPNVVALALNLLDRLLLIKQVSKEHFQKTGSACLLVASKLRSL 110 (257)
T ss_dssp GGCCCGGGHHHHTSSCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHCS
T ss_pred HhCCChhHHHhcCccCCHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHccc
Confidence 3578999995 899999999999999 99999999999999999999
Q ss_pred ---chhhhhhhc-ccCCHHHHHHHHHHHHHHcCCcccccCc-------------c----HHHHHHHHHHHHHHhchhccc
Q 047159 47 ---SVKDLISIS-ETYTRDHMLRMEKLMLKKLKFRLNAAQS-------------D----TKLEHLAFYLIELSLVQYEAL 105 (137)
Q Consensus 47 ---~~~~~~~~~-~~yt~~~i~~mE~~IL~~L~~~l~~~~~-------------d----~~~~~~a~yl~el~l~d~~~~ 105 (137)
+++|+++++ +.|++++|.+||+.||++|+|+++.+++ + ..++.+|.+++++++.|+.|+
T Consensus 111 ~~p~~~d~~~~~~~~~~~~~i~~mE~~iL~~L~~~l~~~tp~~fl~~~~~~~~~~~~~~~~~~~~a~~~le~~l~d~~~~ 190 (257)
T 1g3n_C 111 TPISTSSLCYAAADSFSRQELIDQEKELLEKLAWRTEAVLATDVTSFLLLKLVGGSQHLDFWHHEVNTLITKALVDPLTG 190 (257)
T ss_dssp SCCCHHHHHHHTTTCSCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHHSCSSTTHHHHHHHHHHHHHHHHTSTTGG
T ss_pred cCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCcCCCCCHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHhCcchh
Confidence 678999999 9999999999999999999999995432 1 134678999999999999999
Q ss_pred CcChHHHHHHHHHHHHHHhC
Q 047159 106 KFKPSLLCASAIYVARCTLQ 125 (137)
Q Consensus 106 ~~~pS~iAaaai~lA~~~l~ 125 (137)
.|+||.|||||+++|+..++
T Consensus 191 ~~~PS~iAaAai~lA~~~l~ 210 (257)
T 1g3n_C 191 SLPASIISAAGCALLVPANV 210 (257)
T ss_dssp GSCHHHHHHHHHHHHCCGGG
T ss_pred CcCHHHHHHHHHHHHHHHhC
Confidence 99999999999999999887
No 6
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=99.94 E-value=2e-27 Score=184.10 Aligned_cols=133 Identities=22% Similarity=0.339 Sum_probs=113.3
Q ss_pred CCCCCCCccccCCCCcHHHHHHHHH--hhhhhcccCchhhhhhHhhh---------------------------------
Q 047159 2 LLPPMENFMSNQTDITPQMIGICHS--CQVHLKFDLMAETLYLMVTL--------------------------------- 46 (137)
Q Consensus 2 ~~~~~~~yl~~q~~it~~mR~~Lvd--~~v~~~~~l~~eTl~LAV~l--------------------------------- 46 (137)
...|+++|++.|++|+++||.+++| ++||.+|++.++|+++||++
T Consensus 31 ~~~~~~~y~~~q~~i~~~~R~~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfls~~~~v~~~~lqlv~~acL~iA~K~eE~ 110 (283)
T 1w98_B 31 TYLRDQHFLEQHPLLQPKMRAILLDWLMEVCEVYKLHRETFYLAQDFFDRYMATQENVVKTLLQLIGISSLFIAAKLEEI 110 (283)
T ss_dssp TSCCCTTGGGGCTTCCHHHHHHHHHHHHHHHHHTTCBHHHHHHHHHHHHHHHHHCCCCCGGGHHHHHHHHHHHHHHHHCS
T ss_pred HhCCCchhhccCCCCCHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhccc
Confidence 3578899999999999999999999 99999999999999999999
Q ss_pred ---chhhhhhhc-ccCCHHHHHHHHHHHHHHcCCcccccCcc------------------------HHHHHHHHHHHHHH
Q 047159 47 ---SVKDLISIS-ETYTRDHMLRMEKLMLKKLKFRLNAAQSD------------------------TKLEHLAFYLIELS 98 (137)
Q Consensus 47 ---~~~~~~~~~-~~yt~~~i~~mE~~IL~~L~~~l~~~~~d------------------------~~~~~~a~yl~el~ 98 (137)
+++|+++++ +.|++++|.+||+.||++|+|+++.+++. ......+.+++|++
T Consensus 111 ~~p~l~~~~~i~~~~~~~~ei~~mE~~IL~~L~~~l~~~tp~~fL~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~llels 190 (283)
T 1w98_B 111 YPPKLHQFAYVTDGACSGDEILTMELMIMKALKWRLSPLTIVSWLNVYMQVAYLNDLHEVLLPQYPQQIFIQIAELLDLC 190 (283)
T ss_dssp SCCCHHHHHHTTTTSSCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHHTCCSSCCSSSCCSCHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCcCCCCCHHHHHHHHHHHhccCchhhHHHHhhhHHHHHHHHHHHHHH
Confidence 578999999 99999999999999999999999954321 11223467899999
Q ss_pred hchhcccCcChHHHHHHHHHHHHHHhC-CCCCCCccc
Q 047159 99 LVQYEALKFKPSLLCASAIYVARCTLQ-MRYTSYIVD 134 (137)
Q Consensus 99 l~d~~~~~~~pS~iAaaai~lA~~~l~-~~~~~y~~~ 134 (137)
+.|+.|++|+||.|||||+++|+..-. .+++||+++
T Consensus 191 l~d~~~l~~~PS~iAaAai~la~~~~~l~~~tg~~~~ 227 (283)
T 1w98_B 191 VLDVDCLEFPYGILAASALYHFSSSELMQKVSGYQWC 227 (283)
T ss_dssp HHSGGGGGSCHHHHHHHHHHHTSCHHHHHHHSCCCHH
T ss_pred HhhhhhhcCCHHHHHHHHHHHHHChHHHHHHhCCCHH
Confidence 999999999999999999999863110 356777765
No 7
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1
Probab=99.94 E-value=1.1e-27 Score=183.13 Aligned_cols=112 Identities=17% Similarity=0.157 Sum_probs=100.2
Q ss_pred cccCCCCcHHHHHHHHH--hhhhhcccCchhhhhhHhhh-----------------------------------chhhhh
Q 047159 10 MSNQTDITPQMIGICHS--CQVHLKFDLMAETLYLMVTL-----------------------------------SVKDLI 52 (137)
Q Consensus 10 l~~q~~it~~mR~~Lvd--~~v~~~~~l~~eTl~LAV~l-----------------------------------~~~~~~ 52 (137)
+..|++|+++||.++|| ++||.+|++.+||+|+||+| ++++|+
T Consensus 38 ~~~q~~i~~~~R~~lvdWl~ev~~~~~l~~eT~~lAv~~lDRfLs~~~v~~~~lqLvg~tcl~iAsK~eE~~p~~~~~l~ 117 (252)
T 1f5q_B 38 VNVDQHFTSQYRKVLTTWMFCVCKDLRQDNNVFPLAVALLDELFLSTRIDRENYQSTAAVALHIAGKVRAYMPIKATQLA 117 (252)
T ss_dssp SSHHHHHHCSHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHH
T ss_pred CccCCCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 45688999999999999 99999999999999999999 678899
Q ss_pred hhc-ccCCHHHHHHHHHHHHHHcCCcccccCc-------------c----HHHHHHHHHHHHHHhchhcccCcChHHHHH
Q 047159 53 SIS-ETYTRDHMLRMEKLMLKKLKFRLNAAQS-------------D----TKLEHLAFYLIELSLVQYEALKFKPSLLCA 114 (137)
Q Consensus 53 ~~~-~~yt~~~i~~mE~~IL~~L~~~l~~~~~-------------d----~~~~~~a~yl~el~l~d~~~~~~~pS~iAa 114 (137)
++| +.|++++|++||+.||++|+|+++.+++ + ..++.+|.|++++++.|++|+.|+||+|||
T Consensus 118 ~~~~~~yt~~~i~~mE~~IL~~L~w~l~~pTp~~FL~~~l~~~~~~~~~~~~~~~~a~~~l~~~l~d~~~l~~~PS~iAa 197 (252)
T 1f5q_B 118 YLCGGATTADKLLTLEVKSLDTLSWVADRCLSTDLICYILHIMHAPREDYLNIYNLCRPKIFCALCDGRSAMKRPVLITL 197 (252)
T ss_dssp HHHCTTCCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHCHHHHTSCHHHHHH
T ss_pred HHhCCCCCHHHHHHHHHHHHHHCCCccCCCCHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHHHhchhhhccCHHHHHH
Confidence 999 9999999999999999999999996432 1 135678999999999999999999999999
Q ss_pred HHHHHHH
Q 047159 115 SAIYVAR 121 (137)
Q Consensus 115 aai~lA~ 121 (137)
||+.++.
T Consensus 198 aa~~~~l 204 (252)
T 1f5q_B 198 ACMHLTM 204 (252)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9965543
No 8
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A
Probab=99.94 E-value=8e-27 Score=179.47 Aligned_cols=124 Identities=20% Similarity=0.304 Sum_probs=111.2
Q ss_pred CCCCCCCccc-cCCCCcHHHHHHHHH--hhhhhcccCchhhhhhHhhh--------------------------------
Q 047159 2 LLPPMENFMS-NQTDITPQMIGICHS--CQVHLKFDLMAETLYLMVTL-------------------------------- 46 (137)
Q Consensus 2 ~~~~~~~yl~-~q~~it~~mR~~Lvd--~~v~~~~~l~~eTl~LAV~l-------------------------------- 46 (137)
...|.++|+. .|++|+++||.+++| ++|+.+|++.++|+++||+|
T Consensus 37 ~~~p~~~y~~~~q~~i~~~~R~~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfls~~~v~~~~lqlv~~acL~iAsK~EE~ 116 (271)
T 2w96_A 37 TCAPSVSYFKCVQKEVLPSMRKIVATWMLEVCEEQKCEEEVFPLAMNYLDRFLSLEPVKKSRLQLLGATCMFVASKMKET 116 (271)
T ss_dssp HTCCCTTHHHHTCSSCCHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHTTSCCCTTTHHHHHHHHHHHHHHHHCS
T ss_pred HhCCCchHHHhcCCcCCHHHHHHHHHHHHHHHHHHCCchhHHHHHHHHHHHhCCcCCcCHHHHHHHHHHHHHHHHHHhhc
Confidence 3578999986 899999999999999 89999999999999999999
Q ss_pred ---chhhhhhhc-ccCCHHHHHHHHHHHHHHcCCcccccCc-------------cHH----HHHHHHHHHHHHhchhccc
Q 047159 47 ---SVKDLISIS-ETYTRDHMLRMEKLMLKKLKFRLNAAQS-------------DTK----LEHLAFYLIELSLVQYEAL 105 (137)
Q Consensus 47 ---~~~~~~~~~-~~yt~~~i~~mE~~IL~~L~~~l~~~~~-------------d~~----~~~~a~yl~el~l~d~~~~ 105 (137)
++++++.++ +.|++++|.+||+.||++|+|+++.+++ +.. ++..|.+++++++.|+.|+
T Consensus 117 ~p~~~~~~~~~~~~~~~~~eI~~mE~~IL~~L~~~l~~~tp~~fl~~~~~~l~~~~~~~~~~~~~a~~~l~~~~~d~~~~ 196 (271)
T 2w96_A 117 IPLTAEKLCIYTDNSIRPEELLQMELLLVNKLKWNLAAMTPHDFIEHFLSKMPEAEENKQIIRKHAQTFVALCATDVKFI 196 (271)
T ss_dssp SCCCHHHHHHHTTTSSCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHTSTHHH
T ss_pred CCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHCCCccCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHhhhhhh
Confidence 678899999 9999999999999999999999995432 111 3457889999999999999
Q ss_pred CcChHHHHHHHHHHHHHHhC
Q 047159 106 KFKPSLLCASAIYVARCTLQ 125 (137)
Q Consensus 106 ~~~pS~iAaaai~lA~~~l~ 125 (137)
.|+||.|||||+++|+..++
T Consensus 197 ~~~PS~iAaAai~lA~~~l~ 216 (271)
T 2w96_A 197 SNPPSMVAAGSVVAAVQGLN 216 (271)
T ss_dssp HSCHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHhC
Confidence 99999999999999999875
No 9
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=99.82 E-value=2.3e-20 Score=142.06 Aligned_cols=120 Identities=18% Similarity=0.354 Sum_probs=101.7
Q ss_pred CCccc-cCCCCcHHHHHHHHH--hhhhhcccCchhhhhhHhhh----------------------------------chh
Q 047159 7 ENFMS-NQTDITPQMIGICHS--CQVHLKFDLMAETLYLMVTL----------------------------------SVK 49 (137)
Q Consensus 7 ~~yl~-~q~~it~~mR~~Lvd--~~v~~~~~l~~eTl~LAV~l----------------------------------~~~ 49 (137)
|++.+ .++++...||..++| .+|+.+|+|.++|+++|++| +++
T Consensus 26 ps~~~~~~~~~e~~~R~~~~~~i~~v~~~l~l~~~t~~~A~~~~dRf~~~~~~~~~~~qlv~~acL~lA~K~eE~~~~l~ 105 (258)
T 2i53_A 26 PSQLEGLDPATEARYRREGARFIFDVGTRLGLHYDTLATGIIYFHRFYMFHSFKQFPRYVTGACCLFLAGKVEETPKKCK 105 (258)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred chhhcCCCHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCChhhcCHHHHHHHHHHHHHccccccccHH
Confidence 44444 456788899999999 89999999999999999999 566
Q ss_pred hhhhh-----c-ccC------CHHHHHHHHHHHHHHcCCcccccC-------------ccH----HHHHHHHHHHHHHhc
Q 047159 50 DLISI-----S-ETY------TRDHMLRMEKLMLKKLKFRLNAAQ-------------SDT----KLEHLAFYLIELSLV 100 (137)
Q Consensus 50 ~~~~~-----~-~~y------t~~~i~~mE~~IL~~L~~~l~~~~-------------~d~----~~~~~a~yl~el~l~ 100 (137)
|++.. + +.| ++++|++||+.||++|+|+++.++ .+. .+...|.++++.++.
T Consensus 106 d~~~~~~~~~~~~~~~~~~~~~~~~i~~~E~~iL~~L~f~l~~~~P~~fl~~~~~~l~~~~~~~~~~~~~A~~l~~~s~~ 185 (258)
T 2i53_A 106 DIIKTARSLLNDVQFGQFGDDPKEEVMVLERILLQTIKFDLQVEHPYQFLLKYAKQLKGDKNKIQKLVQMAWTFVNDSLC 185 (258)
T ss_dssp HHHHHHHHHSCHHHHGGGCSCHHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHTBCSCHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhchhhhhhhhhhHHHHHHHHHHHHHHHCCCceeccChHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHc
Confidence 77643 3 345 489999999999999999999542 222 578899999999999
Q ss_pred hhcccCcChHHHHHHHHHHHHHHhCC
Q 047159 101 QYEALKFKPSLLCASAIYVARCTLQM 126 (137)
Q Consensus 101 d~~~~~~~pS~iAaaai~lA~~~l~~ 126 (137)
++.++.|+||.||+||+++|..+++.
T Consensus 186 ~~~~l~~~Ps~IAaAai~lA~~~~~~ 211 (258)
T 2i53_A 186 TTLSLQWEPEIIAVAVMYLAGRLCKF 211 (258)
T ss_dssp TTGGGTSCHHHHHHHHHHHHHHHHTC
T ss_pred CCchhccChHHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999874
No 10
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B*
Probab=99.76 E-value=1.3e-18 Score=132.38 Aligned_cols=110 Identities=15% Similarity=0.294 Sum_probs=94.1
Q ss_pred CcHHHHHHHHH--hhhhhcccCchhhhhhHhhh----------------------------------chhhhhhh-----
Q 047159 16 ITPQMIGICHS--CQVHLKFDLMAETLYLMVTL----------------------------------SVKDLISI----- 54 (137)
Q Consensus 16 it~~mR~~Lvd--~~v~~~~~l~~eTl~LAV~l----------------------------------~~~~~~~~----- 54 (137)
....||..++| .+|+.+|+|.++|+++|++| +++|++..
T Consensus 26 ~e~~~R~~~~~~i~~v~~~l~l~~~t~~~A~~~~dRf~~~~~~~~~~~qlv~~acL~lA~K~EE~p~~l~d~~~~~~~~~ 105 (257)
T 2ivx_A 26 KELSCRQQAANLIQEMGQRLNVSQLTINTAIVYMHRFYMHHSFTKFNKNIISSTALFLAAKVEEQARKLEHVIKVAHACL 105 (257)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhhCChhhhCHHHHHHHHHHHHhccccCCcCHHHHHHHHHHHh
Confidence 34589999999 89999999999999999999 55666533
Q ss_pred ---------c-ccCC--HHHHHHHHHHHHHHcCCcccccC-------------ccHHHHHHHHHHHHHHhchhc-ccCcC
Q 047159 55 ---------S-ETYT--RDHMLRMEKLMLKKLKFRLNAAQ-------------SDTKLEHLAFYLIELSLVQYE-ALKFK 108 (137)
Q Consensus 55 ---------~-~~yt--~~~i~~mE~~IL~~L~~~l~~~~-------------~d~~~~~~a~yl~el~l~d~~-~~~~~ 108 (137)
+ +.|+ +++|++||+.||++|+|+++.++ .+..+...|.++++.++.++. ++.|+
T Consensus 106 ~~~~~~~~~~~~~y~~~~~~I~~~E~~iL~~L~f~l~~~~P~~fl~~~~~~l~~~~~~~~~A~~~~~~sl~~~~~~l~~~ 185 (257)
T 2ivx_A 106 HPLEPLLDTKCDAYLQQTRELVILETIMLQTLGFEITIEHPHTDVVKCTQLVRASKDLAQTSYFMATNSLHLTTFCLQYK 185 (257)
T ss_dssp CTTSCCCCTTSHHHHHHHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCGGGTSC
T ss_pred ccCCCCCCcchHHHHHHHHHHHHHHHHHHHHcccceEeeCcHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhcccHHHcCC
Confidence 3 4565 99999999999999999999543 346678899999999986544 89999
Q ss_pred hHHHHHHHHHHHHHHhC
Q 047159 109 PSLLCASAIYVARCTLQ 125 (137)
Q Consensus 109 pS~iAaaai~lA~~~l~ 125 (137)
||.||+||+++|...++
T Consensus 186 Ps~IAaAai~lA~~~~~ 202 (257)
T 2ivx_A 186 PTVIACVCIHLACKWSN 202 (257)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhC
Confidence 99999999999999987
No 11
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=99.74 E-value=1.4e-17 Score=128.88 Aligned_cols=108 Identities=17% Similarity=0.187 Sum_probs=94.8
Q ss_pred HHHHHHHH--hhhhhcccCchhhhhhHhhh-----------------------------------chhhhhhhc------
Q 047159 19 QMIGICHS--CQVHLKFDLMAETLYLMVTL-----------------------------------SVKDLISIS------ 55 (137)
Q Consensus 19 ~mR~~Lvd--~~v~~~~~l~~eTl~LAV~l-----------------------------------~~~~~~~~~------ 55 (137)
+||.+++| .+|+.+++|.++|+++|++| +++|++..+
T Consensus 41 ~~R~~~~~~I~~v~~~l~L~~~t~~tA~~~~~RF~~~~s~~~~~~~lva~acLfLA~K~EE~~~~~~~di~~~~~~~~k~ 120 (285)
T 3rgf_B 41 KLQIFFTNVIQALGEHLKLRQQVIATATVYFKRFYARYSLKSIDPVLMAPTCVFLASKVEEFGVVSNTRLIAAATSVLKT 120 (285)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhCCchhcCHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHcc
Confidence 68999999 89999999999999999999 245665433
Q ss_pred ---------ccCCHHHHHHHHHHHHHHcCCcccccC-------------ccHHHHHHHHHHHHHHhchhcccCcChHHHH
Q 047159 56 ---------ETYTRDHMLRMEKLMLKKLKFRLNAAQ-------------SDTKLEHLAFYLIELSLVQYEALKFKPSLLC 113 (137)
Q Consensus 56 ---------~~yt~~~i~~mE~~IL~~L~~~l~~~~-------------~d~~~~~~a~yl~el~l~d~~~~~~~pS~iA 113 (137)
..|++++|++||+.||++|+|+++..+ .+..+..+|.++++.++.+..++.|+||.||
T Consensus 121 ~~~~~~~~~~~~~~~~Il~~E~~iL~~L~f~l~v~~P~~fL~~~~~~l~~~~~~~~~A~~~l~~sl~t~~~l~~~Ps~IA 200 (285)
T 3rgf_B 121 RFSYAFPKEFPYRMNHILECEFYLLELMDCCLIVYHPYRPLLQYVQDMGQEDMLLPLAWRIVNDTYRTDLCLLYPPFMIA 200 (285)
T ss_dssp HCTTTCCSCCCCCHHHHHHHHHHHHHHTTTCCCCCCSHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSHHHHSCHHHHH
T ss_pred cccccCchhhHHHHHHHHHHHHHHHHHcCCCeEeCChHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccChhhccCHHHHH
Confidence 247999999999999999999999643 2456788999999999999999999999999
Q ss_pred HHHHHHHHHHhCC
Q 047159 114 ASAIYVARCTLQM 126 (137)
Q Consensus 114 aaai~lA~~~l~~ 126 (137)
+||+++|..+++.
T Consensus 201 aAaiylA~~~~~~ 213 (285)
T 3rgf_B 201 LACLHVACVVQQK 213 (285)
T ss_dssp HHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCC
Confidence 9999999999885
No 12
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe}
Probab=99.73 E-value=5.6e-17 Score=122.08 Aligned_cols=111 Identities=14% Similarity=0.160 Sum_probs=97.6
Q ss_pred CCcHHHHHHHHH--hhhhhcccCchhhhhhHhhh-----------------------------------chhhhhhhc-c
Q 047159 15 DITPQMIGICHS--CQVHLKFDLMAETLYLMVTL-----------------------------------SVKDLISIS-E 56 (137)
Q Consensus 15 ~it~~mR~~Lvd--~~v~~~~~l~~eTl~LAV~l-----------------------------------~~~~~~~~~-~ 56 (137)
.+... |..++| .+++..++|.++|+++|++| +++|++..+ +
T Consensus 23 ~~~~~-R~~~~~~i~~v~~~l~L~~~t~~~A~~~~~Rf~~~~~~~~~~~~~lv~~acL~lA~K~Ee~~~~l~d~~~~~~~ 101 (235)
T 1zp2_A 23 CLSKD-TIYQWKVVQTFGDRLRLRQRVLATAIVLLRRYMLKKNEEKGFSLEALVATCIYLSCKVEECPVHIRTICNEAND 101 (235)
T ss_dssp CSCHH-HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCSCCCCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHT
T ss_pred chhHH-HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcccccccCHHHHHHHHHHHHhccccCcccHHHHHHHHHH
Confidence 34444 999999 89999999999999999999 567777777 4
Q ss_pred ------cCCHHHHHHHHHHHHHHcCCcccccC-------------ccHHHHHHHHHHHHHHhchhcccCcChHHHHHHHH
Q 047159 57 ------TYTRDHMLRMEKLMLKKLKFRLNAAQ-------------SDTKLEHLAFYLIELSLVQYEALKFKPSLLCASAI 117 (137)
Q Consensus 57 ------~yt~~~i~~mE~~IL~~L~~~l~~~~-------------~d~~~~~~a~yl~el~l~d~~~~~~~pS~iAaaai 117 (137)
.+++++|.+||+.||++|+|+++... .+..+...|.++++.++.+..++.|+||.||+||+
T Consensus 102 ~~~~~~~~~~~~I~~~E~~iL~~L~f~l~~~~P~~~l~~~~~~~~~~~~~~~~A~~~l~~s~~~~~~l~~~Ps~IAaAai 181 (235)
T 1zp2_A 102 LWSLKVKLSRSNISEIEFEIISVLDAFLIVHHPYTSLEQAFHDGIINQKQLEFAWSIVNDSYASSLCLMAHPHQLAYAAL 181 (235)
T ss_dssp TCCCSSCCCHHHHHHHHHHHHHHTTTCCCCCCTHHHHHHHHHTTSSCHHHHHHHHHHHHHHTTTTGGGTSCHHHHHHHHH
T ss_pred HccchhhccHHHHHHHHHHHHHHCCCcEEecChHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCchhccCHHHHHHHHH
Confidence 68999999999999999999999542 35667889999999999999999999999999999
Q ss_pred HHHHHHhCC
Q 047159 118 YVARCTLQM 126 (137)
Q Consensus 118 ~lA~~~l~~ 126 (137)
++|..+++.
T Consensus 182 ~lA~~~~~~ 190 (235)
T 1zp2_A 182 LISCCNDEN 190 (235)
T ss_dssp HHHHTSCTT
T ss_pred HHHHHhcCC
Confidence 999998763
No 13
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=99.70 E-value=6.3e-18 Score=134.73 Aligned_cols=110 Identities=15% Similarity=0.277 Sum_probs=94.0
Q ss_pred CcHHHHHHHHH--hhhhhcccCchhhhhhHhhh----------------------------------chhhhhhh-----
Q 047159 16 ITPQMIGICHS--CQVHLKFDLMAETLYLMVTL----------------------------------SVKDLISI----- 54 (137)
Q Consensus 16 it~~mR~~Lvd--~~v~~~~~l~~eTl~LAV~l----------------------------------~~~~~~~~----- 54 (137)
....||..++| ++|+.+|+|.++|+++||+| +++|++.+
T Consensus 33 ~E~~~R~~~v~wI~ev~~~l~L~~~t~~tAv~~~dRFl~~~sv~~~~~qlva~acLfLA~K~EE~p~~l~d~v~v~~~~~ 112 (358)
T 2pk2_A 33 KELSYRQQAANLLQDMGQRLNVSQLTINTAIVYMHRFYMIQSFTRFPGNSVAPAALFLAAKVEEQPKKLEHVIKVAHTCL 112 (358)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHh
Confidence 33589999999 89999999999999999999 55667643
Q ss_pred ---------c-ccCC--HHHHHHHHHHHHHHcCCcccccC-------------ccHHHHHHHHHHHHHHhchhc-ccCcC
Q 047159 55 ---------S-ETYT--RDHMLRMEKLMLKKLKFRLNAAQ-------------SDTKLEHLAFYLIELSLVQYE-ALKFK 108 (137)
Q Consensus 55 ---------~-~~yt--~~~i~~mE~~IL~~L~~~l~~~~-------------~d~~~~~~a~yl~el~l~d~~-~~~~~ 108 (137)
+ +.|+ +++|++||+.||++|+|+++.++ .+..+..+|.++++.+++++. ++.|+
T Consensus 113 ~~~~~~~~~~~~~y~~~~~~Il~~E~~IL~~L~f~L~v~~P~~fL~~~~~~l~~~~~l~~~A~~ll~~sl~~t~l~l~y~ 192 (358)
T 2pk2_A 113 HPQESLPDTRSEAYLQQVQDLVILESIILQTLGFELTIDHPHTHVVKCTQLVRASKDLAQTSYFMATNSLHLTTFSLQYT 192 (358)
T ss_dssp CSSSCCCCTTSHHHHGGGTGGGTHHHHHHHHTTTCCCCCCTTHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCGGGTSC
T ss_pred ccccccccccchhhhHHHHHHHHHHHHHHHHcCCceeCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhccC
Confidence 2 3454 89999999999999999999543 245678899999999997555 79999
Q ss_pred hHHHHHHHHHHHHHHhC
Q 047159 109 PSLLCASAIYVARCTLQ 125 (137)
Q Consensus 109 pS~iAaaai~lA~~~l~ 125 (137)
||.||+|||++|..+++
T Consensus 193 Ps~IAaAAI~lA~~~l~ 209 (358)
T 2pk2_A 193 PPVVACVCIHLACKWSN 209 (358)
T ss_dssp HHHHTTTTTTTHHHHTT
T ss_pred HHHHHHHHHHHHHHHhC
Confidence 99999999999999987
No 14
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Probab=99.63 E-value=1.8e-15 Score=119.04 Aligned_cols=113 Identities=15% Similarity=0.189 Sum_probs=95.4
Q ss_pred CCcHH----HHHHHHH--hhhhhccc--CchhhhhhHhhh----------------------------------chhhhh
Q 047159 15 DITPQ----MIGICHS--CQVHLKFD--LMAETLYLMVTL----------------------------------SVKDLI 52 (137)
Q Consensus 15 ~it~~----mR~~Lvd--~~v~~~~~--l~~eTl~LAV~l----------------------------------~~~~~~ 52 (137)
.+++. +|....+ .+|+.+|+ |.++|+++|++| ++++++
T Consensus 47 ~lt~eeE~~lr~~~~~~I~ev~~~l~~~Lp~~t~~tA~~~~~RF~~~~s~~~~~~~lva~acLfLA~K~EE~~~~l~d~v 126 (323)
T 1jkw_A 47 FLEPHEEMTLCKYYEKRLLEFCSVFKPAMPRSVVGTACMYFKRFYLNNSVMEYHPRIIMLTCAFLACKVDEFNVSSPQFV 126 (323)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHHHHHHHTTCCCCHHHHG
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhCChhhcCHHHHHHHHHHHHHhhhcCCCCHHHHH
Confidence 45554 6677777 89999999 999999999999 667887
Q ss_pred hhc-c-----cCCHHHHHHHHHHHHHHcCCcccccCc--------------------cHHHHHHHHHHHHHHhchhcccC
Q 047159 53 SIS-E-----TYTRDHMLRMEKLMLKKLKFRLNAAQS--------------------DTKLEHLAFYLIELSLVQYEALK 106 (137)
Q Consensus 53 ~~~-~-----~yt~~~i~~mE~~IL~~L~~~l~~~~~--------------------d~~~~~~a~yl~el~l~d~~~~~ 106 (137)
..+ + .|++++|++||+.||++|+|+++..++ ...+...|.++++.++.+..++.
T Consensus 127 ~~~~~~p~~~~~~~~~Il~~E~~iL~~L~f~l~v~~P~~~L~~~l~~l~~~~~~~~~~~~l~~~A~~~l~~sl~t~~~l~ 206 (323)
T 1jkw_A 127 GNLRESPLGQEKALEQILEYELLLIQQLNFHLIVHNPYRPFEGFLIDLKTRYPILENPEILRKTADDFLNRIALTDAYLL 206 (323)
T ss_dssp GGSSSCHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSHHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHTTSTHHHH
T ss_pred HHhccChhhhHHHHHHHHHHHHHHHHHCCCcEEcCChHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccHHHc
Confidence 755 3 478999999999999999999995322 13466789999999999999999
Q ss_pred cChHHHHHHHHHHHHHHhCCC
Q 047159 107 FKPSLLCASAIYVARCTLQMR 127 (137)
Q Consensus 107 ~~pS~iAaaai~lA~~~l~~~ 127 (137)
|+||.||+||+++|...++.+
T Consensus 207 ~~Ps~IAaAai~lA~~~~~~~ 227 (323)
T 1jkw_A 207 YTPSQIALTAILSSASRAGIT 227 (323)
T ss_dssp SCHHHHHHHHHHHHHHHHSCC
T ss_pred CCHHHHHHHHHHHHHHHcCCC
Confidence 999999999999999998853
No 15
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=99.31 E-value=3.5e-11 Score=88.52 Aligned_cols=100 Identities=17% Similarity=0.165 Sum_probs=86.1
Q ss_pred hhhhhcccCchhhhhhHhhh----------------------------------chhhhhhhcccCCHHHHHHHHHHHHH
Q 047159 27 CQVHLKFDLMAETLYLMVTL----------------------------------SVKDLISISETYTRDHMLRMEKLMLK 72 (137)
Q Consensus 27 ~~v~~~~~l~~eTl~LAV~l----------------------------------~~~~~~~~~~~yt~~~i~~mE~~IL~ 72 (137)
-+++..++|.++|...|+.| +++|++..++ +++.+|.++|+.||+
T Consensus 13 ~~~~~~L~L~~~v~~~A~~~~~r~~~~~~~~~~~~~~v~aaclylAcK~ee~p~~l~di~~~~~-~~~~~i~~~~~~ll~ 91 (207)
T 1c9b_A 13 TTMADRINLPRNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKEIGRCFKLILK 91 (207)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHTCSTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHTSS-SCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHhcCCcCCCCHHHHHHHHHHHHHHhcCCCCCHHHHHHHHC-CCHHHHHHHHHHHHH
Confidence 67899999999999999999 5667766654 889999999999999
Q ss_pred HcCCccccc-------------CccHHHHHHHHHHHHHHhchhcccCcChHHHHHHHHHHHHHHhCCC
Q 047159 73 KLKFRLNAA-------------QSDTKLEHLAFYLIELSLVQYEALKFKPSLLCASAIYVARCTLQMR 127 (137)
Q Consensus 73 ~L~~~l~~~-------------~~d~~~~~~a~yl~el~l~d~~~~~~~pS~iAaaai~lA~~~l~~~ 127 (137)
.|+|++... +.+..+...|.++++.++.+.-+.+++|+.|||||+++|....+.+
T Consensus 92 ~L~~~l~~~~p~~~l~r~~~~l~l~~~~~~~A~~i~~~~~~~~l~~g~~P~~IAaAaiylA~~~~~~~ 159 (207)
T 1c9b_A 92 ALETSVDLITTGDFMSRFCSNLCLPKQVQMAATHIARKAVELDLVPGRSPISVAAAAIYMASQASAEK 159 (207)
T ss_dssp HTTCCCCCCCTHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTCSTTCCHHHHHHHHHHHHHHTSSSC
T ss_pred HHCCCcCcCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCccCCCChHHHHHHHHHHHHHHHCCC
Confidence 999999843 2346788899999999988777889999999999999999988753
No 16
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=98.92 E-value=1.5e-08 Score=73.92 Aligned_cols=99 Identities=13% Similarity=0.168 Sum_probs=83.5
Q ss_pred hhhhhcccCchhhhhhHhhh----------------------------------chhhhhhhcccCCHHHHHHHHHHHHH
Q 047159 27 CQVHLKFDLMAETLYLMVTL----------------------------------SVKDLISISETYTRDHMLRMEKLMLK 72 (137)
Q Consensus 27 ~~v~~~~~l~~eTl~LAV~l----------------------------------~~~~~~~~~~~yt~~~i~~mE~~IL~ 72 (137)
-+++..++|.+.+...|..+ +++|+...+ .++..+|.++++.|++
T Consensus 17 ~~~~~~L~L~~~v~~~A~~l~~~~~~~~~~~gr~~~~vaaAclylAcr~~~~p~~l~di~~~~-~v~~~~i~~~~~~l~~ 95 (200)
T 1ais_B 17 DRITAQLKLPRHVEEEAARLYREAVRKGLIRGRSIESVMAACVYAACRLLKVPRTLDEIADIA-RVDKKEIGRSYRFIAR 95 (200)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHHTTTTTTTCCHHHHHHHHHHHHHHHHTCCCCHHHHHHHT-TSCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHHHcCCCCCHHHHHHHH-CCCHHHHHHHHHHHHH
Confidence 57888889988998888888 455665554 4789999999999999
Q ss_pred HcCCcccc--cC-------------ccHHHHHHHHHHHHHHhchhcccCcChHHHHHHHHHHHHHHhCC
Q 047159 73 KLKFRLNA--AQ-------------SDTKLEHLAFYLIELSLVQYEALKFKPSLLCASAIYVARCTLQM 126 (137)
Q Consensus 73 ~L~~~l~~--~~-------------~d~~~~~~a~yl~el~l~d~~~~~~~pS~iAaaai~lA~~~l~~ 126 (137)
.|+|++.. .+ .+..+...|.++++.+..+.-+.+++|+.|||||+|+|....+.
T Consensus 96 ~L~~~~~~~~~~p~~~i~r~~~~L~l~~~v~~~A~~i~~~~~~~~~~~gr~P~~iAaAaly~A~~~~~~ 164 (200)
T 1ais_B 96 NLNLTPKKLFVKPTDYVNKFADELGLSEKVRRRAIEILDEAYKRGLTSGKSPAGLVAAALYIASLLEGE 164 (200)
T ss_dssp HTTCCTTTTCCCGGGGHHHHHHHHTCCHHHHHHHHHHHHHHHHTTCCTTSCHHHHHHHHHHHHHHHTTC
T ss_pred HhcccCCcCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHhCC
Confidence 99999876 43 24568889999999999888889999999999999999998874
No 17
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=97.98 E-value=3.9e-06 Score=66.22 Aligned_cols=99 Identities=13% Similarity=0.059 Sum_probs=36.7
Q ss_pred hhhhhcccCchhhhhhHhhh----------------------------------chhhhhhhcccCCHHHHHHHHHHHHH
Q 047159 27 CQVHLKFDLMAETLYLMVTL----------------------------------SVKDLISISETYTRDHMLRMEKLMLK 72 (137)
Q Consensus 27 ~~v~~~~~l~~eTl~LAV~l----------------------------------~~~~~~~~~~~yt~~~i~~mE~~IL~ 72 (137)
-+++..++|...+.--|..+ ++.|++.++ .+++.+|.++++.|++
T Consensus 134 ~~~~~~L~Lp~~v~d~A~~lyk~~~~~~~~kgr~~~~vaaAclyiAcR~e~~prtl~ei~~~~-~v~~keIgr~~~~l~~ 212 (345)
T 3k7a_M 134 TMLCDAAELPKIVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRAEVARTFKEIQSLI-HVKTKEFGKTLNIMKN 212 (345)
T ss_dssp HHHHHHTTCCHHHHTHHHHHHHHHSSSCSSCCCCSHHHHTTTTTTTSBTTBSSCCHHHHHHSS-SCCSHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHhcCcccCCcHHHHHHHHHHHHHHHcCCCccHHHHHHHH-CCCHHHHHHHHHHHHH
Confidence 45677788877777777666 455665554 3788999999999999
Q ss_pred HcC------------Cccccc-------------CccHHHHHHHHHHHHHHhchhcccCcChHHHHHHHHHHHHHHhCC
Q 047159 73 KLK------------FRLNAA-------------QSDTKLEHLAFYLIELSLVQYEALKFKPSLLCASAIYVARCTLQM 126 (137)
Q Consensus 73 ~L~------------~~l~~~-------------~~d~~~~~~a~yl~el~l~d~~~~~~~pS~iAaaai~lA~~~l~~ 126 (137)
.|+ +++... ..+..+...|.++++.+.-+.-...++|+.|||||||+|..+++.
T Consensus 213 ~L~~~~~~~~~~~~~~~~~~~~p~~~i~Rf~~~L~l~~~v~~~A~~i~~~~~~~~l~~Gr~P~~IAaAaIylAa~~~~~ 291 (345)
T 3k7a_M 213 ILRGKSEDGFLKIDTDNMSGAQNLTYIPRFCSHLGLPMQVTTSAEYTAKKCKEIKEIAGKSPITIAVVSIYLNILLFQI 291 (345)
T ss_dssp HHTCC--------------------------------------------------------------------------
T ss_pred HHhhhhccccccccccccCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhchhcCCCHHHHHHHHHHHHHHHHCC
Confidence 999 777632 123567788999999988877788999999999999999988763
No 18
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=94.99 E-value=0.015 Score=45.75 Aligned_cols=99 Identities=13% Similarity=0.065 Sum_probs=33.4
Q ss_pred hhhhhcccCchhhhhhHhhh----------------------------------chhhhhhhcccCCHHHHHHHHHHHHH
Q 047159 27 CQVHLKFDLMAETLYLMVTL----------------------------------SVKDLISISETYTRDHMLRMEKLMLK 72 (137)
Q Consensus 27 ~~v~~~~~l~~eTl~LAV~l----------------------------------~~~~~~~~~~~yt~~~i~~mE~~IL~ 72 (137)
-+++..++|...+.-.|..+ ++.|+..++ ..++.+|-+..+.|.+
T Consensus 134 ~~~~~~L~Lp~~v~d~A~~lyk~a~~~~~~rGrs~e~vaAAclYiACR~~~~prtl~eI~~~~-~v~~keigr~~k~l~~ 212 (345)
T 4bbr_M 134 TMLCDAAELPKIVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRAEVARTFKEIQSLI-HVKTKEFGKTLNIMKN 212 (345)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHHHHHHTCCBCCHHHHHHHH-TCCTTHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHhcCCccCCCHHHHHHHHHHHHHHhcCCCccHHHHHHHh-CCCHHHHHHHHHHHHH
Confidence 45667777776666666665 455555444 3567899999999999
Q ss_pred HcCCc------------cccc-------------CccHHHHHHHHHHHHHHhchhcccCcChHHHHHHHHHHHHHHhCC
Q 047159 73 KLKFR------------LNAA-------------QSDTKLEHLAFYLIELSLVQYEALKFKPSLLCASAIYVARCTLQM 126 (137)
Q Consensus 73 ~L~~~------------l~~~-------------~~d~~~~~~a~yl~el~l~d~~~~~~~pS~iAaaai~lA~~~l~~ 126 (137)
.|+.. +... ..+..+...|..+++.+.-+.-...-+|+.|||||||+|-.+.+.
T Consensus 213 ~L~l~~~~~~~~~~~~~~~~~~p~~~i~Rf~s~L~l~~~v~~~A~~i~~~~~~~~i~~GR~P~~IAAAaIylAa~l~g~ 291 (345)
T 4bbr_M 213 ILRGKSEDGFLKIDTDNMSGAQNLTYIPRFCSHLGLPMQVTTSAEYTAKKCKEIKEIAGKSPITIAVVSIYLNILLFQI 291 (345)
T ss_dssp CC-----------------------------------------------------------------------------
T ss_pred HhCccccccccccccccCCCCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcccccCCChHHHHHHHHHHHHHHhCC
Confidence 99974 2211 123456667777777766655557899999999999999887763
No 19
>2pmi_B PHO85 cyclin PHO80, aminoglycoside anti; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_B*
Probab=89.64 E-value=0.51 Score=36.32 Aligned_cols=26 Identities=15% Similarity=0.253 Sum_probs=24.1
Q ss_pred ccCCHHHHHHHHHHHHHHcCCccccc
Q 047159 56 ETYTRDHMLRMEKLMLKKLKFRLNAA 81 (137)
Q Consensus 56 ~~yt~~~i~~mE~~IL~~L~~~l~~~ 81 (137)
++++.+|+-.||+..|..|||+|.+.
T Consensus 148 gGisl~ELN~LE~eFL~lLdf~L~V~ 173 (293)
T 2pmi_B 148 GGVRCHELNILENDFLKRVNYRIIPR 173 (293)
T ss_dssp HTSCHHHHHHHHHHHHHTTTTCCSCC
T ss_pred cCcCHHHHHHHHHHHHHHcCCceeeC
Confidence 67899999999999999999999964
No 20
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe}
Probab=76.96 E-value=4.8 Score=29.13 Aligned_cols=42 Identities=19% Similarity=0.246 Sum_probs=32.2
Q ss_pred cHHHHHHHHHHHHHHhchhcccC-cChHHHHHHHHHHHHHHhC
Q 047159 84 DTKLEHLAFYLIELSLVQYEALK-FKPSLLCASAIYVARCTLQ 125 (137)
Q Consensus 84 d~~~~~~a~yl~el~l~d~~~~~-~~pS~iAaaai~lA~~~l~ 125 (137)
...+...|..+.+-.+....+.. +.|..+|+||+++|.+.-.
T Consensus 45 ~~~t~~~A~~~~~Rf~~~~~~~~~~~~~lv~~acL~lA~K~Ee 87 (235)
T 1zp2_A 45 RQRVLATAIVLLRRYMLKKNEEKGFSLEALVATCIYLSCKVEE 87 (235)
T ss_dssp CHHHHHHHHHHHHHHHHHCCSCCCCCHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHhcccccccCHHHHHHHHHHHHhcccc
Confidence 34555666666666666667788 9999999999999998754
No 21
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=75.79 E-value=5.8 Score=28.01 Aligned_cols=41 Identities=10% Similarity=0.024 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHhchhcccCcChHHHHHHHHHHHHHHhC
Q 047159 85 TKLEHLAFYLIELSLVQYEALKFKPSLLCASAIYVARCTLQ 125 (137)
Q Consensus 85 ~~~~~~a~yl~el~l~d~~~~~~~pS~iAaaai~lA~~~l~ 125 (137)
..+...|..+..-.+....+-+.+|..+|+||+|+|.+.-+
T Consensus 23 ~~v~~~A~~~~~r~~~~~~~~~~~~~~v~aaclylAcK~ee 63 (207)
T 1c9b_A 23 RNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEG 63 (207)
T ss_dssp HHHHHHHHHHHHHHHHHTCSTTSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhcCCcCCCCHHHHHHHHHHHHHHhcC
Confidence 44555666666666666667889999999999999999765
No 22
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=75.78 E-value=8.7 Score=26.88 Aligned_cols=42 Identities=17% Similarity=0.051 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHhchhcccCcChHHHHHHHHHHHHHHhCC
Q 047159 85 TKLEHLAFYLIELSLVQYEALKFKPSLLCASAIYVARCTLQM 126 (137)
Q Consensus 85 ~~~~~~a~yl~el~l~d~~~~~~~pS~iAaaai~lA~~~l~~ 126 (137)
..+...|..+...++....+-+.+|..+|+||+|+|.+..+.
T Consensus 27 ~~v~~~A~~l~~~~~~~~~~~gr~~~~vaaAclylAcr~~~~ 68 (200)
T 1ais_B 27 RHVEEEAARLYREAVRKGLIRGRSIESVMAACVYAACRLLKV 68 (200)
T ss_dssp HHHHHHHHHHHHHHHTTTTTTTCCHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHHHcCC
Confidence 456667777777776655567799999999999999988763
No 23
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B*
Probab=72.80 E-value=7.7 Score=28.33 Aligned_cols=42 Identities=12% Similarity=0.171 Sum_probs=33.4
Q ss_pred cHHHHHHHHHHHHHHhchhcccCcChHHHHHHHHHHHHHHhC
Q 047159 84 DTKLEHLAFYLIELSLVQYEALKFKPSLLCASAIYVARCTLQ 125 (137)
Q Consensus 84 d~~~~~~a~yl~el~l~d~~~~~~~pS~iAaaai~lA~~~l~ 125 (137)
...+...|-.+.+-.+....+..+.|..+|+||+++|.+.-.
T Consensus 48 ~~~t~~~A~~~~dRf~~~~~~~~~~~qlv~~acL~lA~K~EE 89 (257)
T 2ivx_A 48 SQLTINTAIVYMHRFYMHHSFTKFNKNIISSTALFLAAKVEE 89 (257)
T ss_dssp CHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHHHhhCChhhhCHHHHHHHHHHHHhcccc
Confidence 345666676777777777778889999999999999998754
No 24
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=71.90 E-value=8.4 Score=28.08 Aligned_cols=42 Identities=7% Similarity=-0.026 Sum_probs=33.4
Q ss_pred cHHHHHHHHHHHHHHhchhcccCcChHHHHHHHHHHHHHHhC
Q 047159 84 DTKLEHLAFYLIELSLVQYEALKFKPSLLCASAIYVARCTLQ 125 (137)
Q Consensus 84 d~~~~~~a~yl~el~l~d~~~~~~~pS~iAaaai~lA~~~l~ 125 (137)
...+...|-.+.+-.+....+..+++..+|+||+++|.+.-.
T Consensus 58 ~~~t~~~A~~~~dRf~~~~~~~~~~~qlv~~acL~lA~K~eE 99 (258)
T 2i53_A 58 HYDTLATGIIYFHRFYMFHSFKQFPRYVTGACCLFLAGKVEE 99 (258)
T ss_dssp CHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHTT
T ss_pred ChHHHHHHHHHHHHHHHhCChhhcCHHHHHHHHHHHHHcccc
Confidence 355666677777777776778889999999999999998754
No 25
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=69.12 E-value=9.1 Score=28.65 Aligned_cols=41 Identities=12% Similarity=0.223 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHhchhcccCcChHHHHHHHHHHHHHHhC
Q 047159 85 TKLEHLAFYLIELSLVQYEALKFKPSLLCASAIYVARCTLQ 125 (137)
Q Consensus 85 ~~~~~~a~yl~el~l~d~~~~~~~pS~iAaaai~lA~~~l~ 125 (137)
..+...|..+.+--+....+..+.|..+|+||+++|.+.-.
T Consensus 61 ~~t~~tA~~~~~RF~~~~s~~~~~~~lva~acLfLA~K~EE 101 (285)
T 3rgf_B 61 QQVIATATVYFKRFYARYSLKSIDPVLMAPTCVFLASKVEE 101 (285)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhCCchhcCHHHHHHHHHHHHHhhhc
Confidence 44555555555655666677889999999999999998754
No 26
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Probab=68.90 E-value=11 Score=28.90 Aligned_cols=43 Identities=7% Similarity=0.148 Sum_probs=32.9
Q ss_pred ccHHHHHHHHHHHHHHhchhcccCcChHHHHHHHHHHHHHHhC
Q 047159 83 SDTKLEHLAFYLIELSLVQYEALKFKPSLLCASAIYVARCTLQ 125 (137)
Q Consensus 83 ~d~~~~~~a~yl~el~l~d~~~~~~~pS~iAaaai~lA~~~l~ 125 (137)
....+...|..+.+--+....+..+.|..||+||+++|.++=.
T Consensus 75 Lp~~t~~tA~~~~~RF~~~~s~~~~~~~lva~acLfLA~K~EE 117 (323)
T 1jkw_A 75 MPRSVVGTACMYFKRFYLNNSVMEYHPRIIMLTCAFLACKVDE 117 (323)
T ss_dssp CCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHhhhCChhhcCHHHHHHHHHHHHHhhhc
Confidence 3445556666666666666778889999999999999998754
No 27
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=68.37 E-value=10 Score=29.56 Aligned_cols=42 Identities=10% Similarity=0.074 Sum_probs=33.7
Q ss_pred cHHHHHHHHHHHHHHhchhcccCcChHHHHHHHHHHHHHHhC
Q 047159 84 DTKLEHLAFYLIELSLVQYEALKFKPSLLCASAIYVARCTLQ 125 (137)
Q Consensus 84 d~~~~~~a~yl~el~l~d~~~~~~~pS~iAaaai~lA~~~l~ 125 (137)
...+..+|-.+.+-.+....+..+.+..+|+||+++|.++-.
T Consensus 55 ~~~t~~tAv~~~dRFl~~~sv~~~~~qlva~acLfLA~K~EE 96 (358)
T 2pk2_A 55 SQLTINTAIVYMHRFYMIQSFTRFPGNSVAPAALFLAAKVEE 96 (358)
T ss_dssp CHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHhhcc
Confidence 355666777777777777778889999999999999998754
No 28
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=62.39 E-value=11 Score=24.30 Aligned_cols=50 Identities=12% Similarity=0.083 Sum_probs=33.7
Q ss_pred CcHHHHHHHHH--hhhhhcccCchhhhhh---Hhhhchhhhhhhc-ccCCHHHHHHHHHHHHHH
Q 047159 16 ITPQMIGICHS--CQVHLKFDLMAETLYL---MVTLSVKDLISIS-ETYTRDHMLRMEKLMLKK 73 (137)
Q Consensus 16 it~~mR~~Lvd--~~v~~~~~l~~eTl~L---AV~l~~~~~~~~~-~~yt~~~i~~mE~~IL~~ 73 (137)
|++.- .++| +|+|..|++.++++-- |.+. ..- ..-|.+.+..+|+++|++
T Consensus 40 i~~~d--~VldKc~ELC~~y~lda~e~VeeWmAFst------s~~g~~pT~enL~~FEhEvl~k 95 (101)
T 2keb_A 40 LDCEE--ALIEKLVELCVQYGQNEEGMVGELIAFCT------STHKVGLTSEILNSFEHEFLSK 95 (101)
T ss_dssp CBCCH--HHHHHHHHHHHHHTCCHHHHHHHHHHHHH------HHTCSBCCHHHHHHHHHHTHHH
T ss_pred CCCCH--HHHHHHHHHHHHcCCCHHHHHHHHHHHHH------hcCCCCCCHHHHHHHHHHHHHH
Confidence 55555 4667 8999999988776532 2211 111 456899999999999875
No 29
>2wh0_Q Pkcev3, protein kinase C epsilon type, NPKC-epsilon; tandem binding, phosphoprotein, signaling protein, 14-3-3, cytoplasm, acetylation; HET: SEP; 2.25A {Homo sapiens}
Probab=61.63 E-value=7 Score=19.07 Aligned_cols=18 Identities=22% Similarity=0.370 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHcCCc
Q 047159 60 RDHMLRMEKLMLKKLKFR 77 (137)
Q Consensus 60 ~~~i~~mE~~IL~~L~~~ 77 (137)
.++|.++|..|-++|.|+
T Consensus 12 dqeikelennirkalsfd 29 (31)
T 2wh0_Q 12 DQEIKELENNIRKALSFD 29 (31)
T ss_pred HHHHHHHHHHHHHHhccc
Confidence 478999999999999986
No 30
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*
Probab=42.22 E-value=48 Score=24.28 Aligned_cols=41 Identities=12% Similarity=0.097 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHhchhcccCcChHHHHHHHHHHHHHHhC
Q 047159 85 TKLEHLAFYLIELSLVQYEALKFKPSLLCASAIYVARCTLQ 125 (137)
Q Consensus 85 ~~~~~~a~yl~el~l~d~~~~~~~pS~iAaaai~lA~~~l~ 125 (137)
...-.+|-.+++-.+....+-...+..+|+||+++|.+.-.
T Consensus 56 ~~tl~lAv~~lDRfl~~~~v~~~~lqlv~~acL~iA~K~eE 96 (269)
T 2b9r_A 56 QETMYMTVSIIDRFMQNNSVPKKMLQLVGVTAMFIASKYEE 96 (269)
T ss_dssp HHHHHHHHHHHHHHHTTSCCCGGGHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhcCCCCcHHHhhHHHHHHHHHHHhccc
Confidence 44555666666666666667778899999999999999754
No 31
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=39.93 E-value=73 Score=24.50 Aligned_cols=43 Identities=9% Similarity=-0.049 Sum_probs=31.4
Q ss_pred cHHHHHHHHHHHHHHhchhcccCcChHHHHHHHHHHHHHHhCC
Q 047159 84 DTKLEHLAFYLIELSLVQYEALKFKPSLLCASAIYVARCTLQM 126 (137)
Q Consensus 84 d~~~~~~a~yl~el~l~d~~~~~~~pS~iAaaai~lA~~~l~~ 126 (137)
...+...|..+...+.-.-.+-.-+...+||||+|+|.+.-+.
T Consensus 143 p~~v~d~A~~lyk~a~~~~~~rGrs~e~vaAAclYiACR~~~~ 185 (345)
T 4bbr_M 143 PKIVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRAEV 185 (345)
T ss_dssp CHHHHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHHHHHHhcCCccCCCHHHHHHHHHHHHHHhcCC
Confidence 3456667777777665443455688999999999999987663
No 32
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A
Probab=38.82 E-value=50 Score=23.89 Aligned_cols=40 Identities=10% Similarity=0.087 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHhchhcccCcChHHHHHHHHHHHHHHhC
Q 047159 86 KLEHLAFYLIELSLVQYEALKFKPSLLCASAIYVARCTLQ 125 (137)
Q Consensus 86 ~~~~~a~yl~el~l~d~~~~~~~pS~iAaaai~lA~~~l~ 125 (137)
..-.+|-.+++-.+.........+..+|+||+++|.+.-.
T Consensus 71 etl~lAv~~~DRfls~~~v~~~~lqLv~~acl~iA~K~eE 110 (254)
T 2f2c_A 71 SVFPLSVSILDRYLCKKQGTKKTLQKIGAACVLIGSKIRT 110 (254)
T ss_dssp THHHHHHHHHHHHTTTSCCCTTTHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHccCCcCHHHccHHHHHHHHHHHHhcc
Confidence 3445555556665555566778899999999999999854
No 33
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A
Probab=36.21 E-value=56 Score=23.86 Aligned_cols=38 Identities=24% Similarity=0.169 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHhchhcccCcChHHHHHHHHHHHHHHhC
Q 047159 88 EHLAFYLIELSLVQYEALKFKPSLLCASAIYVARCTLQ 125 (137)
Q Consensus 88 ~~~a~yl~el~l~d~~~~~~~pS~iAaaai~lA~~~l~ 125 (137)
-.+|-.+++--+.........+..+|+||+++|.+.-.
T Consensus 78 l~lAv~~lDRfls~~~v~~~~lqlv~~acL~iAsK~EE 115 (271)
T 2w96_A 78 FPLAMNYLDRFLSLEPVKKSRLQLLGATCMFVASKMKE 115 (271)
T ss_dssp HHHHHHHHHHHHTTSCCCTTTHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCCcCCcCHHHHHHHHHHHHHHHHHHhh
Confidence 34444445555544566778899999999999999755
No 34
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ...
Probab=35.33 E-value=44 Score=24.31 Aligned_cols=40 Identities=25% Similarity=0.203 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHhchhcccCcChHHHHHHHHHHHHHHhC
Q 047159 86 KLEHLAFYLIELSLVQYEALKFKPSLLCASAIYVARCTLQ 125 (137)
Q Consensus 86 ~~~~~a~yl~el~l~d~~~~~~~pS~iAaaai~lA~~~l~ 125 (137)
..-.+|-.+++--+....+....+..+|+||+++|.+.-.
T Consensus 58 ~tl~lAv~~lDRfls~~~v~~~~lqlv~~acl~iA~K~ee 97 (260)
T 2cch_B 58 ETLHLAVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEE 97 (260)
T ss_dssp HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhccCCCCHHHHhHHHHHHHHHHHHhcc
Confidence 3444444444544444455667788999999999998765
No 35
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1
Probab=34.89 E-value=50 Score=23.94 Aligned_cols=42 Identities=17% Similarity=0.100 Sum_probs=30.3
Q ss_pred cHHHHHHHHHHHHHHhchhcccCcChHHHHHHHHHHHHHHhC
Q 047159 84 DTKLEHLAFYLIELSLVQYEALKFKPSLLCASAIYVARCTLQ 125 (137)
Q Consensus 84 d~~~~~~a~yl~el~l~d~~~~~~~pS~iAaaai~lA~~~l~ 125 (137)
....-.+|-.+++-.+.....-...+..+|+||+++|.+.-.
T Consensus 68 ~~etl~lAv~~~DRfls~~~v~~~~lqLv~~acl~iA~K~eE 109 (257)
T 1g3n_C 68 EPNVVALALNLLDRLLLIKQVSKEHFQKTGSACLLVASKLRS 109 (257)
T ss_dssp CHHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHC
T ss_pred CccHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHcc
Confidence 344555666666666655566677888999999999999754
No 36
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=31.50 E-value=59 Score=24.43 Aligned_cols=38 Identities=21% Similarity=0.094 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHhchhcccCcChHHHHHHHHHHHHHHhC
Q 047159 88 EHLAFYLIELSLVQYEALKFKPSLLCASAIYVARCTLQ 125 (137)
Q Consensus 88 ~~~a~yl~el~l~d~~~~~~~pS~iAaaai~lA~~~l~ 125 (137)
-.+|-.+++--+.........+..+|++|+++|.++-.
T Consensus 92 ~~lAv~~lDRfls~~~v~~~~lqLv~~tcL~lAsK~eE 129 (306)
T 3g33_B 92 FPLAMNYLDRYLSCVPTRKAQLQLLGAVCMLLASKLRE 129 (306)
T ss_dssp HHHHHHHHHHHHHHCCCCGGGHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhcc
Confidence 33444444444444556778899999999999999744
No 37
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=21.96 E-value=1.6e+02 Score=21.62 Aligned_cols=40 Identities=15% Similarity=0.095 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHhch-hcccCcChHHHHHHHHHHHHHHhC
Q 047159 86 KLEHLAFYLIELSLVQ-YEALKFKPSLLCASAIYVARCTLQ 125 (137)
Q Consensus 86 ~~~~~a~yl~el~l~d-~~~~~~~pS~iAaaai~lA~~~l~ 125 (137)
..-.+|-.+++-.+.- ...-...+..+|+||+++|.+.-.
T Consensus 69 ~tl~lAv~~lDRfls~~~~v~~~~lqlv~~acL~iA~K~eE 109 (283)
T 1w98_B 69 ETFYLAQDFFDRYMATQENVVKTLLQLIGISSLFIAAKLEE 109 (283)
T ss_dssp HHHHHHHHHHHHHHHHCCCCCGGGHHHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcc
Confidence 3344444444443333 235567889999999999999864
Done!