BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047160
(129 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1A5J|A Chain A, Chicken B-Myb Dna Binding Domain, Repeat 2 And Repeat3,
Nmr, 32 Structures
Length = 110
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 40/74 (54%), Gaps = 11/74 (14%)
Query: 65 SLKKGALSPEEDQKLIN----YVTSRCLL-------RCGKSCRLCWRNYQRPDINRDSFT 113
L KG + EEDQK+I Y T + L R GK CR W N+ P++ + S+T
Sbjct: 4 DLVKGPWTKEEDQKVIELVKKYGTKQWTLIAKHLKGRLGKQCRERWHNHLNPEVKKSSWT 63
Query: 114 QEEDEIIIKLHQQL 127
+EED II + H+ L
Sbjct: 64 EEEDRIIFEAHKVL 77
>pdb|1H8A|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex3
Length = 128
Score = 50.1 bits (118), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 39/74 (52%), Gaps = 11/74 (14%)
Query: 65 SLKKGALSPEEDQKLINYV-----------TSRCLLRCGKSCRLCWRNYQRPDINRDSFT 113
L KG + EEDQ++I +V R GK CR W N+ P++ + S+T
Sbjct: 24 ELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNPEVKKTSWT 83
Query: 114 QEEDEIIIKLHQQL 127
+EED II + H++L
Sbjct: 84 EEEDRIIYQAHKRL 97
Score = 25.8 bits (55), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 10/33 (30%), Positives = 20/33 (60%)
Query: 90 RCGKSCRLCWRNYQRPDINRDSFTQEEDEIIIK 122
R C+ W+ P++N+ +T+EED+ +I+
Sbjct: 8 RTDVQCQHRWQKVLNPELNKGPWTKEEDQRVIE 40
>pdb|1MSE|C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb
Dna- Binding Domain With Cooperative Recognition Helices
pdb|1MSF|C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb
Dna- Binding Domain With Cooperative Recognition Helices
Length = 105
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 38/73 (52%), Gaps = 11/73 (15%)
Query: 66 LKKGALSPEEDQKLINYV-----------TSRCLLRCGKSCRLCWRNYQRPDINRDSFTQ 114
L KG + EEDQ++I V R GK CR W N+ P++ + S+T+
Sbjct: 2 LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTE 61
Query: 115 EEDEIIIKLHQQL 127
EED II + H++L
Sbjct: 62 EEDRIIYQAHKRL 74
>pdb|1GV2|A Chain A, Crystal Structure Of C-Myb R2r3
Length = 105
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 11/74 (14%)
Query: 65 SLKKGALSPEEDQKLINYV-----------TSRCLLRCGKSCRLCWRNYQRPDINRDSFT 113
L KG + EEDQ++I V R GK CR W N+ P++ + S+T
Sbjct: 1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWT 60
Query: 114 QEEDEIIIKLHQQL 127
+EED II + H++L
Sbjct: 61 EEEDRIIYQAHKRL 74
>pdb|1H88|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex1
pdb|1H89|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex2
Length = 159
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 40/83 (48%), Gaps = 11/83 (13%)
Query: 56 HEAQGRQKSSLKKGALSPEEDQKLINYV-----------TSRCLLRCGKSCRLCWRNYQR 104
H Q L KG + EEDQ++I V R GK CR W N+
Sbjct: 46 HRWQKVLNPELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLN 105
Query: 105 PDINRDSFTQEEDEIIIKLHQQL 127
P++ + S+T+EED II + H++L
Sbjct: 106 PEVKKTSWTEEEDRIIYQAHKRL 128
>pdb|3OSF|A Chain A, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-2f-13 Dna
pdb|3OSF|D Chain D, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-2f-13 Dna
pdb|3OSG|A Chain A, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-1-12 Dna
pdb|3OSG|D Chain D, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-1-12 Dna
Length = 126
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 10/68 (14%)
Query: 65 SLKKGALSPEEDQKL----------INYVTSRCLLRCGKSCRLCWRNYQRPDINRDSFTQ 114
+ KK +PEED+ L + + R + CR W+NY P I+ +T
Sbjct: 8 AAKKQKFTPEEDEMLKRAVAQHGSDWKMIAATFPNRNARQCRDRWKNYLAPSISHTPWTA 67
Query: 115 EEDEIIIK 122
EED ++++
Sbjct: 68 EEDALLVQ 75
>pdb|3ZQC|A Chain A, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
pdb|3ZQC|D Chain D, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
pdb|3ZQC|G Chain G, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
pdb|3ZQC|J Chain J, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
Length = 131
Score = 32.7 bits (73), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 11/71 (15%)
Query: 68 KGALSPEEDQKLINYV-----------TSRCLLRCGKSCRLCWRNYQRPDINRDSFTQEE 116
KG + ED + YV TS R K CR W N+ P + + ++T EE
Sbjct: 2 KGPFTEAEDDLIREYVKENGPQNWPRITSFLPNRSPKQCRERWFNHLDPAVVKHAWTPEE 61
Query: 117 DEIIIKLHQQL 127
DE I + + +L
Sbjct: 62 DETIFRNYLKL 72
>pdb|1GVD|A Chain A, Crystal Structure Of C-Myb R2 V103l Mutant
Length = 52
Score = 28.1 bits (61), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 22/52 (42%), Gaps = 11/52 (21%)
Query: 66 LKKGALSPEEDQKLINYV-----------TSRCLLRCGKSCRLCWRNYQRPD 106
L KG + EEDQ+LI V R GK CR W N+ P+
Sbjct: 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPE 52
>pdb|2K9N|A Chain A, Solution Nmr Structure Of The R2r3 Dna Binding Domain Of
Myb1 Protein From Protozoan Parasite Trichomonas
Vaginalis
pdb|2KDZ|A Chain A, Structure Of The R2r3 Dna Binding Domain Of Myb1 Protein
From Protozoan Parasite Trichomonas Vaginalis In Complex
With Mre-1MRE-2r Dna
Length = 107
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 11/38 (28%), Positives = 20/38 (52%)
Query: 83 VTSRCLLRCGKSCRLCWRNYQRPDINRDSFTQEEDEII 120
++ + R + CR W NY P + D ++ EED ++
Sbjct: 27 ISQLMITRNPRQCRERWNNYINPALRTDPWSPEEDMLL 64
>pdb|1MBG|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 2
pdb|1MBH|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 2
Length = 53
Score = 26.9 bits (58), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 11/52 (21%)
Query: 66 LKKGALSPEEDQKLINYV-----------TSRCLLRCGKSCRLCWRNYQRPD 106
L KG + EEDQ++I V R GK CR W N+ P+
Sbjct: 1 LIKGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPE 52
>pdb|1GV5|A Chain A, Crystal Structure Of C-Myb R2
Length = 52
Score = 26.9 bits (58), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 11/52 (21%)
Query: 66 LKKGALSPEEDQKLINYV-----------TSRCLLRCGKSCRLCWRNYQRPD 106
L KG + EEDQ++I V R GK CR W N+ P+
Sbjct: 1 LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPE 52
>pdb|2ZIR|B Chain B, Crystal Structure Of Rat Protein Farnesyltransferase
Complexed With A Benzofuran Inhibitor And Fpp
pdb|2ZIS|B Chain B, Crystal Structure Of Rat Protein Farnesyltransferase
Complexed With A Bezoruran Inhibitor And Fpp
Length = 440
Score = 26.6 bits (57), Expect = 3.5, Method: Composition-based stats.
Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 24 LPSLVTMSKRQESKINAQSTMNWFQVKKLKFDHEAQGR 61
L +LV + K E +N +S + W ++++F+ QGR
Sbjct: 259 LAALVILKK--ERSLNLKSLLQWVTSRQMRFEGGFQGR 294
>pdb|1FT1|B Chain B, Crystal Structure Of Protein Farnesyltransferase At 2.25
Angstroms Resolution
pdb|1FPP|B Chain B, Protein Farnesyltransferase Complex With Farnesyl
Diphosphate
pdb|1QBQ|B Chain B, Structure Of Rat Farnesyl Protein Transferase Complexed
With A Cvim Peptide And Alpha-Hydroxyfarnesylphosphonic
Acid.
pdb|1D8D|B Chain B, Co-Crystal Structure Of Rat Protein Farnesyltransferase
Complexed With A K-Ras4b Peptide Substrate And Fpp
Analog At 2.0a Resolution
pdb|1D8E|B Chain B, Zinc-Depleted Ftase Complexed With K-Ras4b Peptide
Substrate And Fpp Analog.
pdb|1JCR|B Chain B, Crystal Structure Of Rat Protein Farnesyltransferase
Complexed With The Non-Substrate Tetrapeptide Inhibitor
Cvfm And Farnesyl Diphosphate Substrate
pdb|1JCS|B Chain B, Crystal Structure Of Rat Protein Farnesyltransferase
Complexed With The Peptide Substrate Tkcvfm And An
Analog Of Farnesyl Diphosphate
pdb|1KZO|B Chain B, Protein Farnesyltransferase Complexed With Farnesylated
K-Ras4b Peptide Product And Farnesyl Diphosphate
Substrate Bound Simultaneously
pdb|1KZP|B Chain B, Protein Farnesyltransferase Complexed With A Farnesylated
K-Ras4b Peptide Product
pdb|1O5M|B Chain B, Structure Of Fpt Bound To The Inhibitor Sch66336
pdb|1SA5|B Chain B, Rat Protein Farnesyltransferase Complexed With Fpp And
Bms- 214662
pdb|1TN7|B Chain B, Protein Farnesyltransferase Complexed With A Tc21 Peptide
Substrate And A Fpp Analog At 2.3a Resolution
pdb|1TN8|B Chain B, Protein Farnesyltransferase Complexed With A H-Ras Peptide
Substrate And A Fpp Analog At 2.25a Resolution
pdb|3DPY|B Chain B, Protein Farnesyltransferase Complexed With Fpp And Caged
Tkcvim Substrate
pdb|3E30|B Chain B, Protein Farnesyltransferase Complexed With Fpp And
Ethylene Diamine Inhibitor 4
pdb|3E32|B Chain B, Protein Farnesyltransferase Complexed With Fpp And
Ethylenediamine Scaffold Inhibitor 2
pdb|3E33|B Chain B, Protein Farnesyltransferase Complexed With Fpp And
Ethylenediamine Scaffold Inhibitor 7
pdb|3E34|B Chain B, Protein Farnesyltransferase Complexed With Fpp And
Ethylenediamine-Scaffold Inhibitor 10
pdb|3KSL|B Chain B, Structure Of Fpt Bound To Datfp-Dh-Gpp
pdb|3KSQ|B Chain B, Discovery Of C-Imidazole Azaheptapyridine Fpt Inhibitors
Length = 437
Score = 26.6 bits (57), Expect = 3.5, Method: Composition-based stats.
Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 24 LPSLVTMSKRQESKINAQSTMNWFQVKKLKFDHEAQGR 61
L +LV + K E +N +S + W ++++F+ QGR
Sbjct: 256 LAALVILKK--ERSLNLKSLLQWVTSRQMRFEGGFQGR 291
>pdb|1NL4|B Chain B, Crystal Structure Of Rat Farnesyl Transferase In Complex
With A Potent Biphenyl Inhibitor
pdb|2BED|B Chain B, Structure Of Fpt Bound To Inhibitor Sch207736
pdb|2R2L|B Chain B, Structure Of Farnesyl Protein Transferase Bound To Pb-93
Length = 401
Score = 26.6 bits (57), Expect = 3.7, Method: Composition-based stats.
Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 24 LPSLVTMSKRQESKINAQSTMNWFQVKKLKFDHEAQGR 61
L +LV + K E +N +S + W ++++F+ QGR
Sbjct: 234 LAALVILKK--ERSLNLKSLLQWVTSRQMRFEGGFQGR 269
>pdb|1N95|B Chain B, Aryl Tetrahydrophyridine Inhbitors Of Farnesyltranferase:
Glycine, Phenylalanine And Histidine Derivatives
pdb|1N9A|B Chain B, Farnesyltransferase Complex With Tetrahydropyridine
Inhibitors
pdb|1NI1|B Chain B, Imidazole And Cyanophenyl Farnesyl Transferase Inhibitors
Length = 402
Score = 26.6 bits (57), Expect = 3.7, Method: Composition-based stats.
Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 24 LPSLVTMSKRQESKINAQSTMNWFQVKKLKFDHEAQGR 61
L +LV + K E +N +S + W ++++F+ QGR
Sbjct: 235 LAALVILKK--ERSLNLKSLLQWVTSRQMRFEGGFQGR 270
>pdb|1FT2|B Chain B, Co-Crystal Structure Of Protein Farnesyltransferase
Complexed With A Farnesyl Diphosphate Substrate
Length = 401
Score = 26.6 bits (57), Expect = 3.8, Method: Composition-based stats.
Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 24 LPSLVTMSKRQESKINAQSTMNWFQVKKLKFDHEAQGR 61
L +LV + K E +N +S + W ++++F+ QGR
Sbjct: 235 LAALVILKK--ERSLNLKSLLQWVTSRQMRFEGGFQGR 270
>pdb|1O1R|B Chain B, Structure Of Fpt Bound To Ggpp
pdb|1O1S|B Chain B, Structure Of Fpt Bound To Isoprenoid Analog 3b
pdb|1O1T|B Chain B, Structure Of Fpt Bound To The Cvim-Fpp Product
pdb|3EU5|B Chain B, Crystal Structure Of Ftase(Alpha-Subunit; Beta-Subunit
Delta C10) In Complex With Biotingpp
pdb|4GTM|B Chain B, Ftase In Complex With Bms Analogue 11
pdb|4GTO|B Chain B, Ftase In Complex With Bms Analogue 14
pdb|4GTP|B Chain B, Ftase In Complex With Bms Analogue 16
pdb|4GTQ|B Chain B, Ftase In Complex With Bms Analogue 12
pdb|4GTR|B Chain B, Ftase In Complex With Bms Analogue 13
Length = 427
Score = 26.6 bits (57), Expect = 3.9, Method: Composition-based stats.
Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 24 LPSLVTMSKRQESKINAQSTMNWFQVKKLKFDHEAQGR 61
L +LV + K E +N +S + W ++++F+ QGR
Sbjct: 256 LAALVILKK--ERSLNLKSLLQWVTSRQMRFEGGFQGR 291
>pdb|3EUV|B Chain B, Crystal Structure Of Ftase(Alpha-Subunit; Beta-Subunit
Delta C10, W102t, Y154t) In Complex With Biotingpp
Length = 427
Score = 26.6 bits (57), Expect = 3.9, Method: Composition-based stats.
Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 24 LPSLVTMSKRQESKINAQSTMNWFQVKKLKFDHEAQGR 61
L +LV + K E +N +S + W ++++F+ QGR
Sbjct: 256 LAALVILKK--ERSLNLKSLLQWVTSRQMRFEGGFQGR 291
>pdb|1N94|B Chain B, Aryl Tetrahydropyridine Inhbitors Of Farnesyltransferase:
Glycine, Phenylalanine And Histidine Derivates
pdb|1X81|B Chain B, Farnesyl Transferase Structure Of Jansen Compound
Length = 397
Score = 26.6 bits (57), Expect = 3.9, Method: Composition-based stats.
Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 24 LPSLVTMSKRQESKINAQSTMNWFQVKKLKFDHEAQGR 61
L +LV + K E +N +S + W ++++F+ QGR
Sbjct: 235 LAALVILKK--ERSLNLKSLLQWVTSRQMRFEGGFQGR 270
>pdb|3PZ4|B Chain B, Crystal Structure Of Ftase(Alpha-Subunit; Beta-Subunit
Delta C10) In Complex With Bms3 And Lipid Substrate Fpp
Length = 426
Score = 26.6 bits (57), Expect = 3.9, Method: Composition-based stats.
Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 24 LPSLVTMSKRQESKINAQSTMNWFQVKKLKFDHEAQGR 61
L +LV + K E +N +S + W ++++F+ QGR
Sbjct: 255 LAALVILKK--ERSLNLKSLLQWVTSRQMRFEGGFQGR 290
>pdb|2XAF|B Chain B, Crystal Structure Of Lsd1-Corest In Complex With
Para-Bromo- (+)-Cis-2-Phenylcyclopropyl-1-Amine
pdb|2XAG|B Chain B, Crystal Structure Of Lsd1-Corest In Complex With
Para-Bromo- (-)-Trans-2-Phenylcyclopropyl-1-Amine
pdb|2XAH|B Chain B, Crystal Structure Of Lsd1-Corest In Complex With (+)-
Trans-2-Phenylcyclopropyl-1-Amine
pdb|2XAJ|B Chain B, Crystal Structure Of Lsd1-Corest In Complex With
(-)-Trans- 2-Phenylcyclopropyl-1-Amine
pdb|2XAQ|B Chain B, Crystal Structure Of Lsd1-Corest In Complex With A
Tranylcypromine Derivative (Mc2584, 13b)
pdb|2XAS|B Chain B, Crystal Structure Of Lsd1-Corest In Complex With A
Tranylcypromine Derivative (Mc2580, 14e)
Length = 482
Score = 26.2 bits (56), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Query: 25 PSLVTMSKRQESKINAQSTMNWFQVKKLKFDHEAQGRQKSSLKKGALSPEEDQKLI--NY 82
P + + + +ESK T QVKK K +A+ R K KG +ED + + N
Sbjct: 269 PIDIEVDQNKESKKEVPPTETVPQVKKEKHSTQAKNRAKRKPPKGMFLSQEDVEAVSANA 328
Query: 83 VTSRCLLR 90
+ +LR
Sbjct: 329 TAATTVLR 336
>pdb|3NT2|A Chain A, Crystal Structure Of Myo-Inositol Dehydrogenase From
Bacillus Subtilis With Bound Cofactor
pdb|3NT2|B Chain B, Crystal Structure Of Myo-Inositol Dehydrogenase From
Bacillus Subtilis With Bound Cofactor
pdb|3NT4|A Chain A, Crystal Structure Of Myo-Inositol Dehydrogenase From
Bacillus Subtilis With Bound Cofactor Nadh And Inositol
pdb|3NT4|B Chain B, Crystal Structure Of Myo-Inositol Dehydrogenase From
Bacillus Subtilis With Bound Cofactor Nadh And Inositol
pdb|3NT5|A Chain A, Crystal Structure Of Myo-Inositol Dehydrogenase From
Bacillus Subtilis With Bound Cofactor And Product
Inosose
pdb|3NT5|B Chain B, Crystal Structure Of Myo-Inositol Dehydrogenase From
Bacillus Subtilis With Bound Cofactor And Product
Inosose
Length = 344
Score = 25.4 bits (54), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Query: 21 LVILPSLVTMSKRQESKINAQSTMNWFQVKKLKFDHEAQGRQKSSLKKGALS-PEEDQKL 79
++ LP ++S R+E + + M+W + +D E Q S KKG +S P
Sbjct: 247 IIKLPEPSSISLRKEGRFSTDILMDWQRRFVAAYDVEIQDFIDSIQKKGEVSGPTAWDGY 306
Query: 80 INYVTSRCLLRCGKS 94
I VT+ ++ +S
Sbjct: 307 IAAVTTDACVKAQES 321
>pdb|3NTO|A Chain A, Crystal Structure Of K97v Mutant Myo-Inositol
Dehydrogenase From Bacillus Subtilis
pdb|3NTQ|A Chain A, Crystal Structure Of K97v Mutant Myo-Inositol
Dehydrogenase From Bacillus Subtilis With Bound Cofactor
Nad
pdb|3NTQ|B Chain B, Crystal Structure Of K97v Mutant Myo-Inositol
Dehydrogenase From Bacillus Subtilis With Bound Cofactor
Nad
pdb|3NTR|A Chain A, Crystal Structure Of K97v Mutant Of Myo-Inositol
Dehydrogenase From Bacillus Subtilis With Bound Cofactor
Nad And Inositol
pdb|3NTR|B Chain B, Crystal Structure Of K97v Mutant Of Myo-Inositol
Dehydrogenase From Bacillus Subtilis With Bound Cofactor
Nad And Inositol
Length = 344
Score = 25.4 bits (54), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Query: 21 LVILPSLVTMSKRQESKINAQSTMNWFQVKKLKFDHEAQGRQKSSLKKGALS-PEEDQKL 79
++ LP ++S R+E + + M+W + +D E Q S KKG +S P
Sbjct: 247 IIKLPEPSSISLRKEGRFSTDILMDWQRRFVAAYDVEIQDFIDSIQKKGEVSGPTAWDGY 306
Query: 80 INYVTSRCLLRCGKS 94
I VT+ ++ +S
Sbjct: 307 IAAVTTDACVKAQES 321
>pdb|2AKJ|A Chain A, Structure Of Spinach Nitrite Reductase
Length = 608
Score = 25.4 bits (54), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 24/117 (20%), Positives = 46/117 (39%), Gaps = 10/117 (8%)
Query: 1 FRYGFNPARIIRVHPGPGRFLV--ILPSLVTMS-----KRQESKINAQSTMNWFQVKKLK 53
FR G NPA +++ P + + + L T+S K + +K + + W + +
Sbjct: 86 FRSGINPAEKVKIEKDPMKLFIEDGISDLATLSMEEVDKSKHNKDDIDVRLKWLGLFHRR 145
Query: 54 FDHEAQGRQKSSLKKGALSPEEDQKLINYVTSRCLLRCGK-SCRLCW--RNYQRPDI 107
H + + L G + E+ + L + + C + R W R PD+
Sbjct: 146 KHHYGRFMMRLKLPNGVTTSEQTRYLASVIKKYGKDGCADVTTRQNWQIRGVVLPDV 202
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,840,206
Number of Sequences: 62578
Number of extensions: 131869
Number of successful extensions: 333
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 313
Number of HSP's gapped (non-prelim): 29
length of query: 129
length of database: 14,973,337
effective HSP length: 88
effective length of query: 41
effective length of database: 9,466,473
effective search space: 388125393
effective search space used: 388125393
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)