Query 047160
Match_columns 129
No_of_seqs 162 out of 1245
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 08:17:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047160.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047160hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03212 Transcription repress 99.9 1.4E-25 3E-30 174.9 8.3 78 52-129 9-98 (249)
2 PLN03091 hypothetical protein; 99.9 9.2E-24 2E-28 175.4 8.7 74 56-129 2-87 (459)
3 KOG0048 Transcription factor, 99.9 8.8E-23 1.9E-27 159.2 7.8 66 64-129 5-82 (238)
4 KOG0049 Transcription factor, 99.7 2.3E-18 4.9E-23 148.5 7.4 89 40-128 325-431 (939)
5 PF13921 Myb_DNA-bind_6: Myb-l 99.6 2.5E-15 5.4E-20 93.7 6.1 50 71-120 1-60 (60)
6 PLN03212 Transcription repress 99.6 1.6E-15 3.5E-20 118.6 4.8 84 25-108 27-128 (249)
7 PLN03091 hypothetical protein; 99.5 5.9E-15 1.3E-19 123.1 6.0 81 25-105 16-114 (459)
8 KOG0049 Transcription factor, 99.5 3.8E-15 8.2E-20 128.8 4.0 90 40-129 270-380 (939)
9 KOG0048 Transcription factor, 99.3 2.5E-12 5.5E-17 100.3 6.8 83 24-106 10-110 (238)
10 PF00249 Myb_DNA-binding: Myb- 99.2 2.3E-11 5E-16 72.9 4.2 36 68-103 1-48 (48)
11 KOG0051 RNA polymerase I termi 98.9 1.8E-09 4E-14 93.5 6.5 81 46-126 354-453 (607)
12 COG5147 REB1 Myb superfamily p 98.9 8.4E-10 1.8E-14 94.4 4.2 66 64-129 16-92 (512)
13 KOG0050 mRNA splicing protein 98.8 4.8E-09 1E-13 89.4 3.7 63 66-128 5-78 (617)
14 smart00717 SANT SANT SWI3, AD 98.8 1.6E-08 3.4E-13 58.7 4.6 37 68-104 1-48 (49)
15 cd00167 SANT 'SWI3, ADA2, N-Co 98.5 1.9E-07 4E-12 53.4 4.2 34 70-103 1-45 (45)
16 COG5147 REB1 Myb superfamily p 98.5 1.9E-07 4.1E-12 80.1 5.5 94 25-119 22-132 (512)
17 KOG0050 mRNA splicing protein 98.3 2.7E-07 5.9E-12 78.8 1.7 71 34-104 18-104 (617)
18 PF13921 Myb_DNA-bind_6: Myb-l 98.2 1.1E-06 2.4E-11 54.3 3.2 44 35-79 10-60 (60)
19 KOG0051 RNA polymerase I termi 97.5 0.00024 5.3E-09 62.1 6.7 92 36-129 258-404 (607)
20 PF00249 Myb_DNA-binding: Myb- 97.4 0.00012 2.7E-09 43.4 2.7 21 109-129 1-21 (48)
21 TIGR02894 DNA_bind_RsfA transc 97.4 9.8E-05 2.1E-09 54.9 2.3 39 67-105 3-57 (161)
22 PF13837 Myb_DNA-bind_4: Myb/S 97.0 0.00086 1.9E-08 44.0 3.7 35 69-103 2-64 (90)
23 PRK13923 putative spore coat p 97.0 0.00045 9.8E-09 51.9 2.3 39 66-104 3-57 (170)
24 PF13325 MCRS_N: N-terminal re 97.0 0.002 4.3E-08 49.6 5.8 56 70-125 1-89 (199)
25 PF08914 Myb_DNA-bind_2: Rap1 96.6 0.0035 7.6E-08 40.0 3.8 40 68-107 2-61 (65)
26 smart00717 SANT SANT SWI3, AD 96.6 0.0024 5.2E-08 36.3 2.8 20 109-128 1-20 (49)
27 cd00167 SANT 'SWI3, ADA2, N-Co 95.8 0.009 1.9E-07 33.4 2.5 18 111-128 1-18 (45)
28 PF13873 Myb_DNA-bind_5: Myb/S 95.0 0.054 1.2E-06 34.7 4.5 36 68-103 2-69 (78)
29 TIGR01557 myb_SHAQKYF myb-like 94.9 0.068 1.5E-06 33.2 4.4 20 68-87 3-22 (57)
30 KOG0457 Histone acetyltransfer 92.8 0.17 3.7E-06 43.0 4.3 41 64-104 68-119 (438)
31 PF12776 Myb_DNA-bind_3: Myb/S 91.3 0.38 8.2E-06 31.6 4.0 17 86-102 45-61 (96)
32 KOG4282 Transcription factor G 90.2 0.42 9.1E-06 39.0 4.0 37 68-104 54-114 (345)
33 TIGR01557 myb_SHAQKYF myb-like 89.2 0.51 1.1E-05 29.2 3.0 20 109-128 3-22 (57)
34 KOG1279 Chromatin remodeling f 88.4 0.61 1.3E-05 40.6 3.9 38 65-102 250-297 (506)
35 PF08914 Myb_DNA-bind_2: Rap1 87.7 0.49 1.1E-05 30.1 2.2 18 110-127 3-20 (65)
36 PF09111 SLIDE: SLIDE; InterP 87.6 0.63 1.4E-05 32.9 2.9 23 106-128 46-68 (118)
37 PF11626 Rap1_C: TRF2-interact 86.8 0.62 1.3E-05 30.9 2.4 16 64-79 43-58 (87)
38 PF09111 SLIDE: SLIDE; InterP 83.4 2.2 4.9E-05 30.1 4.1 25 64-88 45-69 (118)
39 COG5259 RSC8 RSC chromatin rem 82.5 1.7 3.6E-05 37.7 3.6 36 67-102 278-323 (531)
40 PF13325 MCRS_N: N-terminal re 76.7 3.7 8.1E-05 31.6 3.7 36 67-102 72-125 (199)
41 KOG1279 Chromatin remodeling f 62.5 6.7 0.00014 34.3 2.6 22 108-129 252-273 (506)
42 KOG0457 Histone acetyltransfer 61.4 6.5 0.00014 33.7 2.3 24 105-128 68-91 (438)
43 KOG2656 DNA methyltransferase 61.0 10 0.00022 32.3 3.3 40 64-103 126-181 (445)
44 COG5114 Histone acetyltransfer 55.5 12 0.00026 31.3 2.8 39 66-104 61-110 (432)
45 PF11626 Rap1_C: TRF2-interact 55.1 8.8 0.00019 25.3 1.7 16 105-120 43-58 (87)
46 COG5118 BDP1 Transcription ini 45.8 29 0.00062 29.7 3.6 35 68-102 365-409 (507)
47 COG5259 RSC8 RSC chromatin rem 44.3 19 0.00041 31.4 2.4 22 108-129 278-299 (531)
48 PLN03142 Probable chromatin-re 41.0 45 0.00098 31.8 4.5 24 105-128 922-945 (1033)
49 PF09197 Rap1-DNA-bind: Rap1, 40.0 41 0.0009 23.3 3.2 16 70-85 1-16 (105)
50 PF11784 DUF3320: Protein of u 34.9 34 0.00073 20.4 1.9 24 75-98 29-52 (52)
51 PF10892 DUF2688: Protein of u 33.0 38 0.00083 21.1 1.9 17 67-83 41-57 (60)
52 PF04270 Strep_his_triad: Stre 31.0 19 0.00041 22.0 0.3 12 3-14 7-18 (53)
53 PF04504 DUF573: Protein of un 28.2 1E+02 0.0023 20.7 3.6 57 69-126 5-94 (98)
54 PF09846 DUF2073: Uncharacteri 25.5 62 0.0013 22.5 2.1 18 68-85 26-43 (104)
55 PF12304 BCLP: Beta-casein lik 25.2 25 0.00053 26.9 0.1 9 4-12 130-138 (188)
56 PF05182 Fip1: Fip1 motif; In 25.0 33 0.00072 20.2 0.6 6 1-6 24-29 (45)
57 PF09356 Phage_BR0599: Phage c 22.5 44 0.00096 21.7 0.9 19 86-104 51-69 (80)
58 KOG2656 DNA methyltransferase 22.4 98 0.0021 26.6 3.1 27 97-127 122-148 (445)
59 PLN03142 Probable chromatin-re 22.4 1.4E+02 0.0031 28.5 4.5 25 64-88 922-946 (1033)
60 PF04435 SPK: Domain of unknow 22.1 1.3E+02 0.0028 19.9 3.2 44 78-121 24-68 (109)
61 PF08466 IRK_N: Inward rectifi 20.8 20 0.00043 21.2 -0.9 28 72-99 13-45 (45)
No 1
>PLN03212 Transcription repressor MYB5; Provisional
Probab=99.92 E-value=1.4e-25 Score=174.94 Aligned_cols=78 Identities=37% Similarity=0.747 Sum_probs=74.3
Q ss_pred hhCCCCcccccCCCCCCCCCCHHHHHHHHHHHHhhC------------cccCchhHHHHHHHhcCCCCCCCCCCHHHHHH
Q 047160 52 LKFDHEAQGRQKSSLKKGALSPEEDQKLINYVTSRC------------LLRCGKSCRLCWRNYQRPDINRDSFTQEEDEI 119 (129)
Q Consensus 52 ~~~~~r~~~~~k~~i~kg~WT~eED~~L~~~v~~~G------------~gRt~~qcr~Rw~~~L~p~ik~~~Wt~eEd~~ 119 (129)
-+++++.+||.++.+++++||+|||++|+++|+++| ++|+++|||+||.++|+|.+++++||.|||++
T Consensus 9 ~~~~~~~pcc~K~glKRg~WT~EEDe~L~~lV~kyG~~nW~~IAk~~g~gRT~KQCReRW~N~L~P~I~kgpWT~EED~l 88 (249)
T PLN03212 9 PVSKKTTPCCTKMGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRGGITSDEEDL 88 (249)
T ss_pred CCCCCCCCCcccCCCcCCCCCHHHHHHHHHHHHHhCcccHHHHHHhhhcCCCcchHHHHHHHhhchhcccCCCChHHHHH
Confidence 357789999999999999999999999999999977 58999999999999999999999999999999
Q ss_pred HHHHHHhcCC
Q 047160 120 IIKLHQQLRD 129 (129)
Q Consensus 120 Ll~~v~~~G~ 129 (129)
|++++.+|||
T Consensus 89 Llel~~~~Gn 98 (249)
T PLN03212 89 ILRLHRLLGN 98 (249)
T ss_pred HHHHHHhccc
Confidence 9999999996
No 2
>PLN03091 hypothetical protein; Provisional
Probab=99.90 E-value=9.2e-24 Score=175.40 Aligned_cols=74 Identities=49% Similarity=0.842 Sum_probs=71.6
Q ss_pred CCcccccCCCCCCCCCCHHHHHHHHHHHHhhC------------cccCchhHHHHHHHhcCCCCCCCCCCHHHHHHHHHH
Q 047160 56 HEAQGRQKSSLKKGALSPEEDQKLINYVTSRC------------LLRCGKSCRLCWRNYQRPDINRDSFTQEEDEIIIKL 123 (129)
Q Consensus 56 ~r~~~~~k~~i~kg~WT~eED~~L~~~v~~~G------------~gRt~~qcr~Rw~~~L~p~ik~~~Wt~eEd~~Ll~~ 123 (129)
+|..||.++.+++++||+|||++|+++|.++| ++|+++|||+||.++|+|.+++++||.|||.+|+++
T Consensus 2 gr~~Cc~KqklrKg~WTpEEDe~L~~~V~kyG~~nWs~IAk~~g~gRT~KQCRERW~NyLdP~IkKgpWT~EED~lLLeL 81 (459)
T PLN03091 2 GRHSCCYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLIIEL 81 (459)
T ss_pred CCCccCcCCCCcCCCCCHHHHHHHHHHHHHhCcCCHHHHhhhhccCcCcchHhHHHHhccCCcccCCCCCHHHHHHHHHH
Confidence 68899999999999999999999999999988 489999999999999999999999999999999999
Q ss_pred HHhcCC
Q 047160 124 HQQLRD 129 (129)
Q Consensus 124 v~~~G~ 129 (129)
|.+||+
T Consensus 82 ~k~~Gn 87 (459)
T PLN03091 82 HAVLGN 87 (459)
T ss_pred HHHhCc
Confidence 999996
No 3
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]
Probab=99.88 E-value=8.8e-23 Score=159.17 Aligned_cols=66 Identities=50% Similarity=0.872 Sum_probs=62.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhhC------------cccCchhHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHhcCC
Q 047160 64 SSLKKGALSPEEDQKLINYVTSRC------------LLRCGKSCRLCWRNYQRPDINRDSFTQEEDEIIIKLHQQLRD 129 (129)
Q Consensus 64 ~~i~kg~WT~eED~~L~~~v~~~G------------~gRt~~qcr~Rw~~~L~p~ik~~~Wt~eEd~~Ll~~v~~~G~ 129 (129)
+.+.||+||+|||++|+.+|.++| .+|++++||.||.|||+|+|+++.||+|||.+|++|+..+||
T Consensus 5 ~~~~kGpWt~EED~~L~~~V~~~G~~~W~~i~k~~gl~R~GKSCRlRW~NyLrP~ikrg~fT~eEe~~Ii~lH~~~GN 82 (238)
T KOG0048|consen 5 PELVKGPWTQEEDLTQIRSIKSFGKHNGTALPKLAGLRRCGKSCRLRWTNYLRPDLKRGNFSDEEEDLIIKLHALLGN 82 (238)
T ss_pred ccccCCCCChHHHHHHHHHHHHhCCCCcchhhhhcCCCccchHHHHHhhcccCCCccCCCCCHHHHHHHHHHHHHHCc
Confidence 445689999999999999999988 499999999999999999999999999999999999999998
No 4
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]
Probab=99.75 E-value=2.3e-18 Score=148.50 Aligned_cols=89 Identities=21% Similarity=0.255 Sum_probs=83.1
Q ss_pred hhCCCChHHHhhhhCCCCccc-------ccCCCCCCCCCCHHHHHHHHHHHHhhC-----------cccCchhHHHHHHH
Q 047160 40 AQSTMNWFQVKKLKFDHEAQG-------RQKSSLKKGALSPEEDQKLINYVTSRC-----------LLRCGKSCRLCWRN 101 (129)
Q Consensus 40 ~~g~~~W~~Ia~~~~~~r~~~-------~~k~~i~kg~WT~eED~~L~~~v~~~G-----------~gRt~~qcr~Rw~~ 101 (129)
.++.++|.+|...|+++..++ .+.|++++|+||++||.+|+++|.+|| |||++.|||+||+|
T Consensus 325 ~nShI~w~kVV~Ympgr~~~qLI~R~~~~LdPsikhg~wt~~ED~~L~~AV~~Yg~kdw~k~R~~vPnRSdsQcR~RY~n 404 (939)
T KOG0049|consen 325 INSHIQWDKVVQYMPGRTRQQLITRFSHTLDPSVKHGRWTDQEDVLLVCAVSRYGAKDWAKVRQAVPNRSDSQCRERYTN 404 (939)
T ss_pred ccCccchHHHHHhcCCcchhhhhhhheeccCccccCCCCCCHHHHHHHHHHHHhCccchhhHHHhcCCccHHHHHHHHHH
Confidence 456789999999999876653 557999999999999999999999999 89999999999999
Q ss_pred hcCCCCCCCCCCHHHHHHHHHHHHhcC
Q 047160 102 YQRPDINRDSFTQEEDEIIIKLHQQLR 128 (129)
Q Consensus 102 ~L~p~ik~~~Wt~eEd~~Ll~~v~~~G 128 (129)
+|+...|.+.||-.||..||.+|.+||
T Consensus 405 vL~~s~K~~rW~l~edeqL~~~V~~YG 431 (939)
T KOG0049|consen 405 VLNRSAKVERWTLVEDEQLLYAVKVYG 431 (939)
T ss_pred HHHHhhccCceeecchHHHHHHHHHHc
Confidence 999999999999999999999999999
No 5
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A ....
Probab=99.60 E-value=2.5e-15 Score=93.70 Aligned_cols=50 Identities=42% Similarity=0.662 Sum_probs=45.3
Q ss_pred CCHHHHHHHHHHHHhhC---------cc-cCchhHHHHHHHhcCCCCCCCCCCHHHHHHH
Q 047160 71 LSPEEDQKLINYVTSRC---------LL-RCGKSCRLCWRNYQRPDINRDSFTQEEDEII 120 (129)
Q Consensus 71 WT~eED~~L~~~v~~~G---------~g-Rt~~qcr~Rw~~~L~p~ik~~~Wt~eEd~~L 120 (129)
||+|||++|+++|..+| .+ ||..||++||.++|+|.+++++||.+||..|
T Consensus 1 WT~eEd~~L~~~~~~~g~~W~~Ia~~l~~Rt~~~~~~r~~~~l~~~~~~~~wt~eEd~~L 60 (60)
T PF13921_consen 1 WTKEEDELLLELVKKYGNDWKKIAEHLGNRTPKQCRNRWRNHLRPKISRGPWTKEEDQRL 60 (60)
T ss_dssp S-HHHHHHHHHHHHHHTS-HHHHHHHSTTS-HHHHHHHHHHTTSTTSTSSSSSHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCcCHHHHHHHHCcCCHHHHHHHHHHHCcccccCCCcCHHHHhcC
Confidence 99999999999999987 34 9999999999999999999999999999886
No 6
>PLN03212 Transcription repressor MYB5; Provisional
Probab=99.58 E-value=1.6e-15 Score=118.64 Aligned_cols=84 Identities=15% Similarity=0.191 Sum_probs=69.5
Q ss_pred cchhhhhhhhHHHHhhhCCCChHHHhhhhC-CCCccccc-------CCCCCCCCCCHHHHHHHHHHHHhhC---------
Q 047160 25 PSLVTMSKRQESKINAQSTMNWFQVKKLKF-DHEAQGRQ-------KSSLKKGALSPEEDQKLINYVTSRC--------- 87 (129)
Q Consensus 25 ps~~~~s~~~~~~v~~~g~~~W~~Ia~~~~-~~r~~~~~-------k~~i~kg~WT~eED~~L~~~v~~~G--------- 87 (129)
|....-...+...|+.+|..+|..||+.++ +++..+|+ +|.+++++||+|||++|++++..+|
T Consensus 27 ~WT~EEDe~L~~lV~kyG~~nW~~IAk~~g~gRT~KQCReRW~N~L~P~I~kgpWT~EED~lLlel~~~~GnKWs~IAk~ 106 (249)
T PLN03212 27 PWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRGGITSDEEDLILRLHRLLGNRWSLIAGR 106 (249)
T ss_pred CCCHHHHHHHHHHHHHhCcccHHHHHHhhhcCCCcchHHHHHHHhhchhcccCCCChHHHHHHHHHHHhccccHHHHHhh
Confidence 344344555567788999999999999885 56666766 3999999999999999999999988
Q ss_pred -cccCchhHHHHHHHhcCCCCC
Q 047160 88 -LLRCGKSCRLCWRNYQRPDIN 108 (129)
Q Consensus 88 -~gRt~~qcr~Rw~~~L~p~ik 108 (129)
+|||++||++||+.+|+..+.
T Consensus 107 LpGRTDnqIKNRWns~LrK~l~ 128 (249)
T PLN03212 107 IPGRTDNEIKNYWNTHLRKKLL 128 (249)
T ss_pred cCCCCHHHHHHHHHHHHhHHHH
Confidence 899999999999998876543
No 7
>PLN03091 hypothetical protein; Provisional
Probab=99.55 E-value=5.9e-15 Score=123.13 Aligned_cols=81 Identities=15% Similarity=0.167 Sum_probs=67.5
Q ss_pred cchhhhhhhhHHHHhhhCCCChHHHhhhhC-CCCccccc-------CCCCCCCCCCHHHHHHHHHHHHhhC---------
Q 047160 25 PSLVTMSKRQESKINAQSTMNWFQVKKLKF-DHEAQGRQ-------KSSLKKGALSPEEDQKLINYVTSRC--------- 87 (129)
Q Consensus 25 ps~~~~s~~~~~~v~~~g~~~W~~Ia~~~~-~~r~~~~~-------k~~i~kg~WT~eED~~L~~~v~~~G--------- 87 (129)
+....-...+...|.++|..+|..||+.++ +|...+|+ +|.+++++||+|||++|+++|..+|
T Consensus 16 ~WTpEEDe~L~~~V~kyG~~nWs~IAk~~g~gRT~KQCRERW~NyLdP~IkKgpWT~EED~lLLeL~k~~GnKWskIAk~ 95 (459)
T PLN03091 16 LWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLIIELHAVLGNRWSQIAAQ 95 (459)
T ss_pred CCCHHHHHHHHHHHHHhCcCCHHHHhhhhccCcCcchHhHHHHhccCCcccCCCCCHHHHHHHHHHHHHhCcchHHHHHh
Confidence 344344455667789999999999999876 55556666 3999999999999999999999988
Q ss_pred -cccCchhHHHHHHHhcCC
Q 047160 88 -LLRCGKSCRLCWRNYQRP 105 (129)
Q Consensus 88 -~gRt~~qcr~Rw~~~L~p 105 (129)
+|||++||++||+..|+.
T Consensus 96 LPGRTDnqIKNRWnslLKK 114 (459)
T PLN03091 96 LPGRTDNEIKNLWNSCLKK 114 (459)
T ss_pred cCCCCHHHHHHHHHHHHHH
Confidence 899999999999987754
No 8
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]
Probab=99.54 E-value=3.8e-15 Score=128.83 Aligned_cols=90 Identities=19% Similarity=0.201 Sum_probs=81.1
Q ss_pred hhCCCChHHHhhhhCCCCcc-cccC------CCCCCCCCCHHHHHHHHHHHHh--------------hCcccCchhHHHH
Q 047160 40 AQSTMNWFQVKKLKFDHEAQ-GRQK------SSLKKGALSPEEDQKLINYVTS--------------RCLLRCGKSCRLC 98 (129)
Q Consensus 40 ~~g~~~W~~Ia~~~~~~r~~-~~~k------~~i~kg~WT~eED~~L~~~v~~--------------~G~gRt~~qcr~R 98 (129)
.++..+|..||..+.+.|.. +|.. ..++...||.|||.+|+++|+. |.+||+..|.-.|
T Consensus 270 A~~~~~W~~IA~~Lgt~RS~yQC~~kF~t~~~~L~ekeWsEEed~kL~alV~~~~~nShI~w~kVV~Ympgr~~~qLI~R 349 (939)
T KOG0049|consen 270 APKFVSWPMIALNLGTNRSSYQCMEKFKTEVSQLSEKEWSEEEDTKLIALVKITSINSHIQWDKVVQYMPGRTRQQLITR 349 (939)
T ss_pred ccccccHHHHHHHhCCCcchHHHHHHHHHHHHHHHhhhcchhhhHHHHHHHHHhhccCccchHHHHHhcCCcchhhhhhh
Confidence 35788999999999886665 6663 6677789999999999999998 5599999999999
Q ss_pred HHHhcCCCCCCCCCCHHHHHHHHHHHHhcCC
Q 047160 99 WRNYQRPDINRDSFTQEEDEIIIKLHQQLRD 129 (129)
Q Consensus 99 w~~~L~p~ik~~~Wt~eEd~~Ll~~v~~~G~ 129 (129)
|...|+|++++|+||.+||.+|+.+|.+||-
T Consensus 350 ~~~~LdPsikhg~wt~~ED~~L~~AV~~Yg~ 380 (939)
T KOG0049|consen 350 FSHTLDPSVKHGRWTDQEDVLLVCAVSRYGA 380 (939)
T ss_pred heeccCccccCCCCCCHHHHHHHHHHHHhCc
Confidence 9999999999999999999999999999983
No 9
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]
Probab=99.34 E-value=2.5e-12 Score=100.34 Aligned_cols=83 Identities=18% Similarity=0.153 Sum_probs=71.0
Q ss_pred ccchhhhhhhhHHHHhhhCCCChHHHhhhhC-CCCccccc-------CCCCCCCCCCHHHHHHHHHHHHhhC--------
Q 047160 24 LPSLVTMSKRQESKINAQSTMNWFQVKKLKF-DHEAQGRQ-------KSSLKKGALSPEEDQKLINYVTSRC-------- 87 (129)
Q Consensus 24 ~ps~~~~s~~~~~~v~~~g~~~W~~Ia~~~~-~~r~~~~~-------k~~i~kg~WT~eED~~L~~~v~~~G-------- 87 (129)
-|....-...+..-|..+|..+|..|++.++ ++...+|+ +|++++|.||+|||.+|++++..+|
T Consensus 10 GpWt~EED~~L~~~V~~~G~~~W~~i~k~~gl~R~GKSCRlRW~NyLrP~ikrg~fT~eEe~~Ii~lH~~~GNrWs~IA~ 89 (238)
T KOG0048|consen 10 GPWTQEEDLTQIRSIKSFGKHNGTALPKLAGLRRCGKSCRLRWTNYLRPDLKRGNFSDEEEDLIIKLHALLGNRWSLIAG 89 (238)
T ss_pred CCCChHHHHHHHHHHHHhCCCCcchhhhhcCCCccchHHHHHhhcccCCCccCCCCCHHHHHHHHHHHHHHCcHHHHHHh
Confidence 3555566667778899999999999999988 55555555 4999999999999999999999988
Q ss_pred --cccCchhHHHHHHHhcCCC
Q 047160 88 --LLRCGKSCRLCWRNYQRPD 106 (129)
Q Consensus 88 --~gRt~~qcr~Rw~~~L~p~ 106 (129)
||||++.+++.|+.+|...
T Consensus 90 ~LPGRTDNeIKN~Wnt~lkkk 110 (238)
T KOG0048|consen 90 RLPGRTDNEVKNHWNTHLKKK 110 (238)
T ss_pred hCCCcCHHHHHHHHHHHHHHH
Confidence 9999999999999887543
No 10
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=99.19 E-value=2.3e-11 Score=72.86 Aligned_cols=36 Identities=33% Similarity=0.493 Sum_probs=31.7
Q ss_pred CCCCCHHHHHHHHHHHHhhC-----------c-ccCchhHHHHHHHhc
Q 047160 68 KGALSPEEDQKLINYVTSRC-----------L-LRCGKSCRLCWRNYQ 103 (129)
Q Consensus 68 kg~WT~eED~~L~~~v~~~G-----------~-gRt~~qcr~Rw~~~L 103 (129)
|++||+|||++|+++|.++| + +||..||++||+++|
T Consensus 1 r~~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~~~~~~~ 48 (48)
T PF00249_consen 1 RGPWTEEEDEKLLEAVKKYGKDNWKKIAKRMPGGRTAKQCRSRYQNLL 48 (48)
T ss_dssp S-SS-HHHHHHHHHHHHHSTTTHHHHHHHHHSSSSTHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCCcHHHHHHHHcCCCCCHHHHHHHHHhhC
Confidence 68999999999999999988 4 899999999999875
No 11
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]
Probab=98.93 E-value=1.8e-09 Score=93.45 Aligned_cols=81 Identities=28% Similarity=0.455 Sum_probs=66.5
Q ss_pred hHHHhhhhCCCCccc-----ccC--CCC-CCCCCCHHHHHHHHHHHHhhC---------cccCchhHHHHHHHhcCCCC-
Q 047160 46 WFQVKKLKFDHEAQG-----RQK--SSL-KKGALSPEEDQKLINYVTSRC---------LLRCGKSCRLCWRNYQRPDI- 107 (129)
Q Consensus 46 W~~Ia~~~~~~r~~~-----~~k--~~i-~kg~WT~eED~~L~~~v~~~G---------~gRt~~qcr~Rw~~~L~p~i- 107 (129)
|..+...+|.+.... .+. |-- .+|.||+||++.|..+|.++| .||.+..|++||.++..++-
T Consensus 354 ~n~~~~~Lp~R~~~siy~~~rR~y~~FE~~rg~wt~ee~eeL~~l~~~~g~~W~~Ig~~lgr~P~~crd~wr~~~~~g~~ 433 (607)
T KOG0051|consen 354 YNNLYKLLPYRDRKSIYHHLRRAYTPFENKRGKWTPEEEEELKKLVVEHGNDWKEIGKALGRMPMDCRDRWRQYVKCGSK 433 (607)
T ss_pred HHhhhhhcCcccchhHHHHHHhcCCccccccCCCCcchHHHHHHHHHHhcccHHHHHHHHccCcHHHHHHHHHhhccccc
Confidence 566677777633321 122 222 899999999999999999988 69999999999999999984
Q ss_pred -CCCCCCHHHHHHHHHHHHh
Q 047160 108 -NRDSFTQEEDEIIIKLHQQ 126 (129)
Q Consensus 108 -k~~~Wt~eEd~~Ll~~v~~ 126 (129)
+++.||.||+..|+++|.+
T Consensus 434 ~~r~~Ws~eEe~~Llk~V~~ 453 (607)
T KOG0051|consen 434 RNRGAWSIEEEEKLLKTVNE 453 (607)
T ss_pred cccCcchHHHHHHHHHHHHH
Confidence 8899999999999999974
No 12
>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]
Probab=98.92 E-value=8.4e-10 Score=94.36 Aligned_cols=66 Identities=27% Similarity=0.471 Sum_probs=61.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhhC-----------cccCchhHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHhcCC
Q 047160 64 SSLKKGALSPEEDQKLINYVTSRC-----------LLRCGKSCRLCWRNYQRPDINRDSFTQEEDEIIIKLHQQLRD 129 (129)
Q Consensus 64 ~~i~kg~WT~eED~~L~~~v~~~G-----------~gRt~~qcr~Rw~~~L~p~ik~~~Wt~eEd~~Ll~~v~~~G~ 129 (129)
..++.|.|+..||+.|+.+|+.+| ..++++||+.||+++|+|.+++..|+.+||..|+.+..++|+
T Consensus 16 ~~~k~gsw~~~EDe~l~~~vk~l~~nnws~vas~~~~~~~kq~~~rw~~~lnp~lk~~~~~~eed~~li~l~~~~~~ 92 (512)
T COG5147 16 TKRKGGSWKRTEDEDLKALVKKLGPNNWSKVASLLISSTGKQSSNRWNNHLNPQLKKKNWSEEEDEQLIDLDKELGT 92 (512)
T ss_pred ceecCCCCCCcchhHHHHHHhhcccccHHHHHHHhcccccccccchhhhhhchhcccccccHHHHHHHHHHHHhcCc
Confidence 556889999999999999999988 358999999999999999999999999999999999999985
No 13
>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=98.77 E-value=4.8e-09 Score=89.38 Aligned_cols=63 Identities=24% Similarity=0.454 Sum_probs=58.1
Q ss_pred CCCCCCCHHHHHHHHHHHHhhC-----------cccCchhHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHhcC
Q 047160 66 LKKGALSPEEDQKLINYVTSRC-----------LLRCGKSCRLCWRNYQRPDINRDSFTQEEDEIIIKLHQQLR 128 (129)
Q Consensus 66 i~kg~WT~eED~~L~~~v~~~G-----------~gRt~~qcr~Rw~~~L~p~ik~~~Wt~eEd~~Ll~~v~~~G 128 (129)
++-|.|+.-||+.|..+|..+| ...+++||+.||..+|||.|++..|+.+||..||.++..+.
T Consensus 5 ~kggvwrntEdeilkaav~kyg~nqws~i~sll~~kt~rqC~~rw~e~ldp~i~~tews~eederlLhlakl~p 78 (617)
T KOG0050|consen 5 IKGGVWRNTEDEVLKAAVMKYGKNQWSRIASLLNRKTARQCKARWEEWLDPAIKKTEWSREEDERLLHLAKLEP 78 (617)
T ss_pred EecceecccHHHHHHHHHHHcchHHHHHHHHHHhhcchhHHHHHHHHHhCHHHhhhhhhhhHHHHHHHHHHhcC
Confidence 4678999999999999999999 46699999999999999999999999999999999987653
No 14
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=98.76 E-value=1.6e-08 Score=58.73 Aligned_cols=37 Identities=35% Similarity=0.544 Sum_probs=33.8
Q ss_pred CCCCCHHHHHHHHHHHHhhC-----------cccCchhHHHHHHHhcC
Q 047160 68 KGALSPEEDQKLINYVTSRC-----------LLRCGKSCRLCWRNYQR 104 (129)
Q Consensus 68 kg~WT~eED~~L~~~v~~~G-----------~gRt~~qcr~Rw~~~L~ 104 (129)
+++||++||.+|+.++..+| ++||+.+|++||.+.+.
T Consensus 1 ~~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~~~~~rt~~~~~~~~~~~~~ 48 (49)
T smart00717 1 KGEWTEEEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRERWNNLLK 48 (49)
T ss_pred CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCHHHHHHHHHHHcC
Confidence 46899999999999999998 57999999999998765
No 15
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=98.51 E-value=1.9e-07 Score=53.36 Aligned_cols=34 Identities=35% Similarity=0.481 Sum_probs=31.2
Q ss_pred CCCHHHHHHHHHHHHhhC-----------cccCchhHHHHHHHhc
Q 047160 70 ALSPEEDQKLINYVTSRC-----------LLRCGKSCRLCWRNYQ 103 (129)
Q Consensus 70 ~WT~eED~~L~~~v~~~G-----------~gRt~~qcr~Rw~~~L 103 (129)
+||++||..|+.++..+| ++|++.||++||.+++
T Consensus 1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~~~~~rs~~~~~~~~~~~~ 45 (45)
T cd00167 1 PWTEEEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRERWRNLL 45 (45)
T ss_pred CCCHHHHHHHHHHHHHHCcCCHHHHHhHcCCCCHHHHHHHHHHhC
Confidence 599999999999999988 5899999999998763
No 16
>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]
Probab=98.49 E-value=1.9e-07 Score=80.11 Aligned_cols=94 Identities=18% Similarity=0.158 Sum_probs=74.1
Q ss_pred cchhhhhhhhHHHHhhhCCCChHHHhhhhCCCCccccc-------CCCCCCCCCCHHHHHHHHHHHHhhC----------
Q 047160 25 PSLVTMSKRQESKINAQSTMNWFQVKKLKFDHEAQGRQ-------KSSLKKGALSPEEDQKLINYVTSRC---------- 87 (129)
Q Consensus 25 ps~~~~s~~~~~~v~~~g~~~W~~Ia~~~~~~r~~~~~-------k~~i~kg~WT~eED~~L~~~v~~~G---------- 87 (129)
+....-.......|..+|..+|..||..+......+|. .|.++++.|+.|||..|+.+..++|
T Consensus 22 sw~~~EDe~l~~~vk~l~~nnws~vas~~~~~~~kq~~~rw~~~lnp~lk~~~~~~eed~~li~l~~~~~~~wstia~~~ 101 (512)
T COG5147 22 SWKRTEDEDLKALVKKLGPNNWSKVASLLISSTGKQSSNRWNNHLNPQLKKKNWSEEEDEQLIDLDKELGTQWSTIADYK 101 (512)
T ss_pred CCCCcchhHHHHHHhhcccccHHHHHHHhcccccccccchhhhhhchhcccccccHHHHHHHHHHHHhcCchhhhhcccc
Confidence 33444455566778899999999999997764555544 3999999999999999999999988
Q ss_pred cccCchhHHHHHHHhcCCCCCCCCCCHHHHHH
Q 047160 88 LLRCGKSCRLCWRNYQRPDINRDSFTQEEDEI 119 (129)
Q Consensus 88 ~gRt~~qcr~Rw~~~L~p~ik~~~Wt~eEd~~ 119 (129)
++|++.||.+||.+.|.+..+ ..||..++..
T Consensus 102 d~rt~~~~~ery~~~~~~~~s-~~~s~~~~~~ 132 (512)
T COG5147 102 DRRTAQQCVERYVNTLEDLSS-THDSKLQRRN 132 (512)
T ss_pred CccchHHHHHHHHHHhhhhhc-cccccccchh
Confidence 569999999999999988766 4555554433
No 17
>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=98.29 E-value=2.7e-07 Score=78.84 Aligned_cols=71 Identities=18% Similarity=0.287 Sum_probs=61.7
Q ss_pred hHHHHhhhCCCChHHHhhhhCCCCccccc-------CCCCCCCCCCHHHHHHHHHHHHhhC---------cccCchhHHH
Q 047160 34 QESKINAQSTMNWFQVKKLKFDHEAQGRQ-------KSSLKKGALSPEEDQKLINYVTSRC---------LLRCGKSCRL 97 (129)
Q Consensus 34 ~~~~v~~~g~~~W~~Ia~~~~~~r~~~~~-------k~~i~kg~WT~eED~~L~~~v~~~G---------~gRt~~qcr~ 97 (129)
..-.|..+|...|.+|++.+.-....+|. .|.|++-.|+.|||++|+.+...+- .||++.||.+
T Consensus 18 lkaav~kyg~nqws~i~sll~~kt~rqC~~rw~e~ldp~i~~tews~eederlLhlakl~p~qwrtIa~i~gr~~~qc~e 97 (617)
T KOG0050|consen 18 LKAAVMKYGKNQWSRIASLLNRKTARQCKARWEEWLDPAIKKTEWSREEDERLLHLAKLEPTQWRTIADIMGRTSQQCLE 97 (617)
T ss_pred HHHHHHHcchHHHHHHHHHHhhcchhHHHHHHHHHhCHHHhhhhhhhhHHHHHHHHHHhcCCccchHHHHhhhhHHHHHH
Confidence 34567889999999999998877777877 4999999999999999999988733 5999999999
Q ss_pred HHHHhcC
Q 047160 98 CWRNYQR 104 (129)
Q Consensus 98 Rw~~~L~ 104 (129)
||++.|+
T Consensus 98 Ry~~ll~ 104 (617)
T KOG0050|consen 98 RYNNLLD 104 (617)
T ss_pred HHHHHHH
Confidence 9998874
No 18
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A ....
Probab=98.23 E-value=1.1e-06 Score=54.29 Aligned_cols=44 Identities=16% Similarity=0.339 Sum_probs=32.5
Q ss_pred HHHHhhhCCCChHHHhhhhCCCCccccc-------CCCCCCCCCCHHHHHHH
Q 047160 35 ESKINAQSTMNWFQVKKLKFDHEAQGRQ-------KSSLKKGALSPEEDQKL 79 (129)
Q Consensus 35 ~~~v~~~g~~~W~~Ia~~~~~~r~~~~~-------k~~i~kg~WT~eED~~L 79 (129)
...+..+| .+|..||++++.++..+|. ++.+++++||++||++|
T Consensus 10 ~~~~~~~g-~~W~~Ia~~l~~Rt~~~~~~r~~~~l~~~~~~~~wt~eEd~~L 60 (60)
T PF13921_consen 10 LELVKKYG-NDWKKIAEHLGNRTPKQCRNRWRNHLRPKISRGPWTKEEDQRL 60 (60)
T ss_dssp HHHHHHHT-S-HHHHHHHSTTS-HHHHHHHHHHTTSTTSTSSSSSHHHHHHH
T ss_pred HHHHHHHC-cCHHHHHHHHCcCCHHHHHHHHHHHCcccccCCCcCHHHHhcC
Confidence 34555666 5899999998535555544 48999999999999987
No 19
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]
Probab=97.53 E-value=0.00024 Score=62.13 Aligned_cols=92 Identities=22% Similarity=0.121 Sum_probs=66.5
Q ss_pred HHHhhhCCCChHHHhhhhCCCCcccccC----------CC--------CCCCCCCHHHHHHHHHHHHhhC----------
Q 047160 36 SKINAQSTMNWFQVKKLKFDHEAQGRQK----------SS--------LKKGALSPEEDQKLINYVTSRC---------- 87 (129)
Q Consensus 36 ~~v~~~g~~~W~~Ia~~~~~~r~~~~~k----------~~--------i~kg~WT~eED~~L~~~v~~~G---------- 87 (129)
+.........|..|+.++.......|.. .. ++-+.|+.+||++|-..|..+.
T Consensus 258 ~~d~~~~~~~~~~~~~~l~a~~~ka~~~~~~y~k~~~t~s~~~~~~~e~~~~~F~~eed~ale~~V~~y~~~eg~s~~q~ 337 (607)
T KOG0051|consen 258 SGDIETPNVSEDSVLRYLRADSNKAGDEWLNYEKDDATGSTGRTKEDEINLKKFSKEEDAALENFVNEYLANEGWSSEQF 337 (607)
T ss_pred hhhhhccCccHHHHHHHHHhhhcccchhhhccccccccCccccchhhhhhhhhccHHHHHHHHHHHHHHHHhhCcchhhh
Confidence 4445556778999999987776665521 33 3338899999999999998822
Q ss_pred ------------------------cccCchhHHH---HHHHhcCCCCCCCCCCHHHHHHHHHHHHhcCC
Q 047160 88 ------------------------LLRCGKSCRL---CWRNYQRPDINRDSFTQEEDEIIIKLHQQLRD 129 (129)
Q Consensus 88 ------------------------~gRt~~qcr~---Rw~~~L~p~ik~~~Wt~eEd~~Ll~~v~~~G~ 129 (129)
|.|+.+.+.. |=++.+.+ ++|.||++|++.|..+|.++|+
T Consensus 338 ~~~i~s~~~~~~~~~l~n~~~~~Lp~R~~~siy~~~rR~y~~FE~--~rg~wt~ee~eeL~~l~~~~g~ 404 (607)
T KOG0051|consen 338 CQRIWSKDWKTIIRNLYNNLYKLLPYRDRKSIYHHLRRAYTPFEN--KRGKWTPEEEEELKKLVVEHGN 404 (607)
T ss_pred hhheeccCcchHHHHHHHhhhhhcCcccchhHHHHHHhcCCcccc--ccCCCCcchHHHHHHHHHHhcc
Confidence 3455555555 22233333 8999999999999999999996
No 20
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=97.44 E-value=0.00012 Score=43.37 Aligned_cols=21 Identities=29% Similarity=0.517 Sum_probs=17.8
Q ss_pred CCCCCHHHHHHHHHHHHhcCC
Q 047160 109 RDSFTQEEDEIIIKLHQQLRD 129 (129)
Q Consensus 109 ~~~Wt~eEd~~Ll~~v~~~G~ 129 (129)
+++||++||.+|+++|.+||+
T Consensus 1 r~~Wt~eE~~~l~~~v~~~g~ 21 (48)
T PF00249_consen 1 RGPWTEEEDEKLLEAVKKYGK 21 (48)
T ss_dssp S-SS-HHHHHHHHHHHHHSTT
T ss_pred CCCCCHHHHHHHHHHHHHhCC
Confidence 579999999999999999995
No 21
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=97.40 E-value=9.8e-05 Score=54.89 Aligned_cols=39 Identities=31% Similarity=0.509 Sum_probs=34.2
Q ss_pred CCCCCCHHHHHHHHHHHHhhC----------------cccCchhHHHHHHHhcCC
Q 047160 67 KKGALSPEEDQKLINYVTSRC----------------LLRCGKSCRLCWRNYQRP 105 (129)
Q Consensus 67 ~kg~WT~eED~~L~~~v~~~G----------------~gRt~~qcr~Rw~~~L~p 105 (129)
+...||.|||.+|-+.|-.|- .+||+-.|.-||+.+++.
T Consensus 3 RQDAWT~eeDlLLAEtVLrhIReG~TQL~AFeEvg~~L~RTsAACGFRWNs~VRk 57 (161)
T TIGR02894 3 RQDAWTHEEDLLLAETVLRHIREGSTQLSAFEEVGRALNRTAAACGFRWNAYVRK 57 (161)
T ss_pred cccccccHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHcccHHHhcchHHHHHHH
Confidence 567899999999999888732 799999999999999873
No 22
>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A.
Probab=97.03 E-value=0.00086 Score=43.97 Aligned_cols=35 Identities=26% Similarity=0.422 Sum_probs=24.3
Q ss_pred CCCCHHHHHHHHHHHHh----------------------------hCcccCchhHHHHHHHhc
Q 047160 69 GALSPEEDQKLINYVTS----------------------------RCLLRCGKSCRLCWRNYQ 103 (129)
Q Consensus 69 g~WT~eED~~L~~~v~~----------------------------~G~gRt~~qcr~Rw~~~L 103 (129)
..||.+|...|+.++.. +|..||+.||+++|.+..
T Consensus 2 ~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L~ 64 (90)
T PF13837_consen 2 RNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKNLK 64 (90)
T ss_dssp -SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 47999999999887766 346899999999999865
No 23
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=96.99 E-value=0.00045 Score=51.87 Aligned_cols=39 Identities=26% Similarity=0.438 Sum_probs=33.2
Q ss_pred CCCCCCCHHHHHHHHHHHHhhC----------------cccCchhHHHHHHHhcC
Q 047160 66 LKKGALSPEEDQKLINYVTSRC----------------LLRCGKSCRLCWRNYQR 104 (129)
Q Consensus 66 i~kg~WT~eED~~L~~~v~~~G----------------~gRt~~qcr~Rw~~~L~ 104 (129)
.++..||.|||.+|-+.|-.++ .+||..+|..||+.+++
T Consensus 3 ~rqdawt~e~d~llae~vl~~i~eg~tql~afe~~g~~L~rt~aac~fRwNs~vr 57 (170)
T PRK13923 3 TRQDAWTQERDGLLAEVVLRHIREGGTQLKAFEEVGDALKRTAAACGFRWNSVVR 57 (170)
T ss_pred chhhhhhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHhhhHHHHHhHHHHHHH
Confidence 3577999999999977777644 69999999999988876
No 24
>PF13325 MCRS_N: N-terminal region of micro-spherule protein
Probab=96.99 E-value=0.002 Score=49.55 Aligned_cols=56 Identities=23% Similarity=0.329 Sum_probs=45.5
Q ss_pred CCCHHHHHHHHHHHHhh------------CcccCchhHHHHHHHhc-CCCC--------------------CCCCCCHHH
Q 047160 70 ALSPEEDQKLINYVTSR------------CLLRCGKSCRLCWRNYQ-RPDI--------------------NRDSFTQEE 116 (129)
Q Consensus 70 ~WT~eED~~L~~~v~~~------------G~gRt~~qcr~Rw~~~L-~p~i--------------------k~~~Wt~eE 116 (129)
.|++++|-+|+.+|..- ...-|-.-+.+||+..| +|.+ .+.+||.+|
T Consensus 1 rW~~~DDl~Li~av~~~~~L~~v~~gvkFS~~fT~~Ei~~RW~~llyd~~is~~a~~~m~~l~p~~~~~iq~kalfS~~E 80 (199)
T PF13325_consen 1 RWKPEDDLLLINAVEQTNDLESVHLGVKFSCKFTLQEIEERWYALLYDPVISRIAVAAMRNLHPELIAAIQSKALFSKEE 80 (199)
T ss_pred CCCchhhHHHHHHHHHhcCHHHHHccCCcCCcCcHHHHHHHHHHHHcChhhHHHHHHHHHhCCcchhhcccccCCCCHHH
Confidence 59999999999999982 24558888999999877 5554 346999999
Q ss_pred HHHHHHHHH
Q 047160 117 DEIIIKLHQ 125 (129)
Q Consensus 117 d~~Ll~~v~ 125 (129)
|++|.....
T Consensus 81 E~lL~~v~s 89 (199)
T PF13325_consen 81 EQLLGTVAS 89 (199)
T ss_pred HHHHHhhhh
Confidence 999988654
No 25
>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif. The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.
Probab=96.60 E-value=0.0035 Score=40.01 Aligned_cols=40 Identities=20% Similarity=0.218 Sum_probs=25.0
Q ss_pred CCCCCHHHHHHHHHHHHhh---C----------------c-ccCchhHHHHHHHhcCCCC
Q 047160 68 KGALSPEEDQKLINYVTSR---C----------------L-LRCGKSCRLCWRNYQRPDI 107 (129)
Q Consensus 68 kg~WT~eED~~L~~~v~~~---G----------------~-gRt~~qcr~Rw~~~L~p~i 107 (129)
+-++|.|||+.|+..|..+ | + .+|-.+-|+||...|.+..
T Consensus 2 R~~fT~edD~~l~~~v~~~~~~~~~~~Gn~iwk~le~~~~t~HtwQSwR~Ry~K~L~~~~ 61 (65)
T PF08914_consen 2 RTPFTEEDDAALLDYVKENERQGGSVSGNKIWKELEEKHPTRHTWQSWRDRYLKHLRGRP 61 (65)
T ss_dssp -----HHHHHHHHHHHHHT--STTTTTSSHHHHHHHHS-SSS--SHHHHHHHHHHT----
T ss_pred CCCCCHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccc
Confidence 4589999999999999652 1 4 8888999999999987654
No 26
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=96.58 E-value=0.0024 Score=36.34 Aligned_cols=20 Identities=35% Similarity=0.685 Sum_probs=18.6
Q ss_pred CCCCCHHHHHHHHHHHHhcC
Q 047160 109 RDSFTQEEDEIIIKLHQQLR 128 (129)
Q Consensus 109 ~~~Wt~eEd~~Ll~~v~~~G 128 (129)
+++||++||..|+.++.+||
T Consensus 1 ~~~Wt~~E~~~l~~~~~~~g 20 (49)
T smart00717 1 KGEWTEEEDELLIELVKKYG 20 (49)
T ss_pred CCCCCHHHHHHHHHHHHHHC
Confidence 36899999999999999998
No 27
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=95.84 E-value=0.009 Score=33.40 Aligned_cols=18 Identities=28% Similarity=0.595 Sum_probs=17.3
Q ss_pred CCCHHHHHHHHHHHHhcC
Q 047160 111 SFTQEEDEIIIKLHQQLR 128 (129)
Q Consensus 111 ~Wt~eEd~~Ll~~v~~~G 128 (129)
+||.+||..|+.++.+||
T Consensus 1 ~Wt~eE~~~l~~~~~~~g 18 (45)
T cd00167 1 PWTEEEDELLLEAVKKYG 18 (45)
T ss_pred CCCHHHHHHHHHHHHHHC
Confidence 599999999999999999
No 28
>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain
Probab=95.04 E-value=0.054 Score=34.72 Aligned_cols=36 Identities=28% Similarity=0.348 Sum_probs=29.8
Q ss_pred CCCCCHHHHHHHHHHHHhh--------------------------------CcccCchhHHHHHHHhc
Q 047160 68 KGALSPEEDQKLINYVTSR--------------------------------CLLRCGKSCRLCWRNYQ 103 (129)
Q Consensus 68 kg~WT~eED~~L~~~v~~~--------------------------------G~gRt~~qcr~Rw~~~L 103 (129)
+..||++|...|+++|.++ |..||..|++..|.+..
T Consensus 2 ~~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk 69 (78)
T PF13873_consen 2 KPNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLK 69 (78)
T ss_pred CCCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Confidence 4579999999999999881 14889999999998764
No 29
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=94.92 E-value=0.068 Score=33.15 Aligned_cols=20 Identities=5% Similarity=0.107 Sum_probs=18.4
Q ss_pred CCCCCHHHHHHHHHHHHhhC
Q 047160 68 KGALSPEEDQKLINYVTSRC 87 (129)
Q Consensus 68 kg~WT~eED~~L~~~v~~~G 87 (129)
+-.||+||..+.+++++.+|
T Consensus 3 r~~WT~eeh~~Fl~ai~~~G 22 (57)
T TIGR01557 3 RVVWTEDLHDRFLQAVQKLG 22 (57)
T ss_pred CCCCCHHHHHHHHHHHHHhC
Confidence 45799999999999999988
No 30
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=92.78 E-value=0.17 Score=43.04 Aligned_cols=41 Identities=7% Similarity=0.087 Sum_probs=35.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhhC-----------cccCchhHHHHHHHhcC
Q 047160 64 SSLKKGALSPEEDQKLINYVTSRC-----------LLRCGKSCRLCWRNYQR 104 (129)
Q Consensus 64 ~~i~kg~WT~eED~~L~~~v~~~G-----------~gRt~~qcr~Rw~~~L~ 104 (129)
-.+-...||.+|+-+|+++++.+| -.++..+|++.|.+++-
T Consensus 68 ~~i~~~~WtadEEilLLea~~t~G~GNW~dIA~hIGtKtkeeck~hy~k~fv 119 (438)
T KOG0457|consen 68 FPILDPSWTADEEILLLEAAETYGFGNWQDIADHIGTKTKEECKEHYLKHFV 119 (438)
T ss_pred CCCCCCCCChHHHHHHHHHHHHhCCCcHHHHHHHHcccchHHHHHHHHHHHh
Confidence 455677899999999999999977 36899999999998774
No 31
>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains.
Probab=91.30 E-value=0.38 Score=31.60 Aligned_cols=17 Identities=18% Similarity=0.229 Sum_probs=12.3
Q ss_pred hCcccCchhHHHHHHHh
Q 047160 86 RCLLRCGKSCRLCWRNY 102 (129)
Q Consensus 86 ~G~gRt~~qcr~Rw~~~ 102 (129)
.|...+..||++||...
T Consensus 45 ~~~~~t~~qlknk~~~l 61 (96)
T PF12776_consen 45 TGLNYTKKQLKNKWKTL 61 (96)
T ss_pred hCCcccHHHHHHHHHHH
Confidence 44566888999988744
No 32
>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription]
Probab=90.18 E-value=0.42 Score=38.97 Aligned_cols=37 Identities=24% Similarity=0.253 Sum_probs=32.1
Q ss_pred CCCCCHHHHHHHHHHHHh------------------------hCcccCchhHHHHHHHhcC
Q 047160 68 KGALSPEEDQKLINYVTS------------------------RCLLRCGKSCRLCWRNYQR 104 (129)
Q Consensus 68 kg~WT~eED~~L~~~v~~------------------------~G~gRt~~qcr~Rw~~~L~ 104 (129)
...|+.+|=..|+.+... .|.-||+.||+++|.+...
T Consensus 54 ~~~Ws~~et~~Li~~~~~~~~~~~~~~~k~~~We~va~k~~~~g~~rs~~qck~K~~nl~k 114 (345)
T KOG4282|consen 54 EPRWSEEETLTLIEIRGEMDVALRRGKLKGPLWEEVARKMAELGYPRSPKQCKAKIENLKK 114 (345)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 468999999999998876 5579999999999998763
No 33
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=89.20 E-value=0.51 Score=29.17 Aligned_cols=20 Identities=20% Similarity=0.310 Sum_probs=18.4
Q ss_pred CCCCCHHHHHHHHHHHHhcC
Q 047160 109 RDSFTQEEDEIIIKLHQQLR 128 (129)
Q Consensus 109 ~~~Wt~eEd~~Ll~~v~~~G 128 (129)
+-.||+||....++++..+|
T Consensus 3 r~~WT~eeh~~Fl~ai~~~G 22 (57)
T TIGR01557 3 RVVWTEDLHDRFLQAVQKLG 22 (57)
T ss_pred CCCCCHHHHHHHHHHHHHhC
Confidence 45899999999999999998
No 34
>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]
Probab=88.37 E-value=0.61 Score=40.61 Aligned_cols=38 Identities=11% Similarity=0.118 Sum_probs=32.9
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhC----------cccCchhHHHHHHHh
Q 047160 65 SLKKGALSPEEDQKLINYVTSRC----------LLRCGKSCRLCWRNY 102 (129)
Q Consensus 65 ~i~kg~WT~eED~~L~~~v~~~G----------~gRt~~qcr~Rw~~~ 102 (129)
...++.||.+|+.+|+++|+.|| ..||..||-.++...
T Consensus 250 ~~~~~~WT~qE~lLLLE~ie~y~ddW~kVa~hVg~ks~eqCI~kFL~L 297 (506)
T KOG1279|consen 250 ESARPNWTEQETLLLLEAIEMYGDDWNKVADHVGTKSQEQCILKFLRL 297 (506)
T ss_pred ccCCCCccHHHHHHHHHHHHHhcccHHHHHhccCCCCHHHHHHHHHhc
Confidence 34567899999999999999988 599999999999753
No 35
>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif. The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.
Probab=87.70 E-value=0.49 Score=30.07 Aligned_cols=18 Identities=22% Similarity=0.484 Sum_probs=12.7
Q ss_pred CCCCHHHHHHHHHHHHhc
Q 047160 110 DSFTQEEDEIIIKLHQQL 127 (129)
Q Consensus 110 ~~Wt~eEd~~Ll~~v~~~ 127 (129)
.+||.+||++|++.|.++
T Consensus 3 ~~fT~edD~~l~~~v~~~ 20 (65)
T PF08914_consen 3 TPFTEEDDAALLDYVKEN 20 (65)
T ss_dssp ----HHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHh
Confidence 489999999999999764
No 36
>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices. It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.
Probab=87.58 E-value=0.63 Score=32.93 Aligned_cols=23 Identities=13% Similarity=0.385 Sum_probs=19.2
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcC
Q 047160 106 DINRDSFTQEEDEIIIKLHQQLR 128 (129)
Q Consensus 106 ~ik~~~Wt~eEd~~Ll~~v~~~G 128 (129)
..++..+|++||..||..+.+||
T Consensus 46 ~~~~k~yseeEDRfLl~~~~~~G 68 (118)
T PF09111_consen 46 NNKKKVYSEEEDRFLLCMLYKYG 68 (118)
T ss_dssp TSS-SSS-HHHHHHHHHHHHHHT
T ss_pred CCCCCCcCcHHHHHHHHHHHHhC
Confidence 56677999999999999999998
No 37
>PF11626 Rap1_C: TRF2-interacting telomeric protein/Rap1 - C terminal domain; InterPro: IPR021661 This family of proteins represents the C-terminal domain of the protein Rap-1, which plays a distinct role in silencing at the silent mating-type loci and telomeres []. The Rap-1 C terminus adopts an all-helical fold. Rap1 carries out its function by recruiting the Sir3 and Sir4 proteins to chromatin via its C-terminal domain []. ; PDB: 3K6G_C 3CZ6_A 3OWT_A.
Probab=86.78 E-value=0.62 Score=30.90 Aligned_cols=16 Identities=31% Similarity=0.530 Sum_probs=9.5
Q ss_pred CCCCCCCCCHHHHHHH
Q 047160 64 SSLKKGALSPEEDQKL 79 (129)
Q Consensus 64 ~~i~kg~WT~eED~~L 79 (129)
|.-..|-||+|+|+.|
T Consensus 43 P~n~~GiWT~eDD~~L 58 (87)
T PF11626_consen 43 PDNMPGIWTPEDDEML 58 (87)
T ss_dssp -TT-TT---HHHHHHH
T ss_pred CCCCCCCcCHHHHHHH
Confidence 5556888999999998
No 38
>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices. It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.
Probab=83.42 E-value=2.2 Score=30.10 Aligned_cols=25 Identities=28% Similarity=0.222 Sum_probs=20.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhhCc
Q 047160 64 SSLKKGALSPEEDQKLINYVTSRCL 88 (129)
Q Consensus 64 ~~i~kg~WT~eED~~L~~~v~~~G~ 88 (129)
|+-++..||.+||.-|+.++..+|-
T Consensus 45 ~~~~~k~yseeEDRfLl~~~~~~G~ 69 (118)
T PF09111_consen 45 PNNKKKVYSEEEDRFLLCMLYKYGY 69 (118)
T ss_dssp STSS-SSS-HHHHHHHHHHHHHHTT
T ss_pred CCCCCCCcCcHHHHHHHHHHHHhCC
Confidence 3557778999999999999999995
No 39
>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]
Probab=82.49 E-value=1.7 Score=37.71 Aligned_cols=36 Identities=14% Similarity=0.115 Sum_probs=31.8
Q ss_pred CCCCCCHHHHHHHHHHHHhhC----------cccCchhHHHHHHHh
Q 047160 67 KKGALSPEEDQKLINYVTSRC----------LLRCGKSCRLCWRNY 102 (129)
Q Consensus 67 ~kg~WT~eED~~L~~~v~~~G----------~gRt~~qcr~Rw~~~ 102 (129)
....||.+|-.+|++.++.|| ..+|..||-.+|.+.
T Consensus 278 ~dk~WS~qE~~LLLEGIe~ygDdW~kVA~HVgtKt~EqCIl~FL~L 323 (531)
T COG5259 278 RDKNWSRQELLLLLEGIEMYGDDWDKVARHVGTKTKEQCILHFLQL 323 (531)
T ss_pred ccccccHHHHHHHHHHHHHhhhhHHHHHHHhCCCCHHHHHHHHHcC
Confidence 455899999999999999988 589999999999853
No 40
>PF13325 MCRS_N: N-terminal region of micro-spherule protein
Probab=76.70 E-value=3.7 Score=31.64 Aligned_cols=36 Identities=33% Similarity=0.289 Sum_probs=30.1
Q ss_pred CCCCCCHHHHHHHHHHHHh------------------hCcccCchhHHHHHHHh
Q 047160 67 KKGALSPEEDQKLINYVTS------------------RCLLRCGKSCRLCWRNY 102 (129)
Q Consensus 67 ~kg~WT~eED~~L~~~v~~------------------~G~gRt~~qcr~Rw~~~ 102 (129)
.+-+||.+||++|...... +-++||+++-...|...
T Consensus 72 ~kalfS~~EE~lL~~v~s~~~p~le~Fq~LL~~n~~vFh~sRTak~L~~HW~lm 125 (199)
T PF13325_consen 72 SKALFSKEEEQLLGTVASSSQPSLETFQELLDKNRSVFHPSRTAKSLQDHWRLM 125 (199)
T ss_pred ccCCCCHHHHHHHHhhhhccCCcHHHHHHHHHhChhhhccccCHHHHHHHHHHH
Confidence 6779999999999997644 22799999999999964
No 41
>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]
Probab=62.53 E-value=6.7 Score=34.31 Aligned_cols=22 Identities=18% Similarity=0.388 Sum_probs=19.6
Q ss_pred CCCCCCHHHHHHHHHHHHhcCC
Q 047160 108 NRDSFTQEEDEIIIKLHQQLRD 129 (129)
Q Consensus 108 k~~~Wt~eEd~~Ll~~v~~~G~ 129 (129)
-...||++|..+||+.+..||.
T Consensus 252 ~~~~WT~qE~lLLLE~ie~y~d 273 (506)
T KOG1279|consen 252 ARPNWTEQETLLLLEAIEMYGD 273 (506)
T ss_pred CCCCccHHHHHHHHHHHHHhcc
Confidence 3458999999999999999984
No 42
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=61.36 E-value=6.5 Score=33.68 Aligned_cols=24 Identities=17% Similarity=0.254 Sum_probs=20.9
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcC
Q 047160 105 PDINRDSFTQEEDEIIIKLHQQLR 128 (129)
Q Consensus 105 p~ik~~~Wt~eEd~~Ll~~v~~~G 128 (129)
-.+-...||.+|+..||+++..||
T Consensus 68 ~~i~~~~WtadEEilLLea~~t~G 91 (438)
T KOG0457|consen 68 FPILDPSWTADEEILLLEAAETYG 91 (438)
T ss_pred CCCCCCCCChHHHHHHHHHHHHhC
Confidence 356667999999999999999987
No 43
>KOG2656 consensus DNA methyltransferase 1-associated protein-1 [Chromatin structure and dynamics; Transcription]
Probab=60.98 E-value=10 Score=32.31 Aligned_cols=40 Identities=15% Similarity=0.097 Sum_probs=33.7
Q ss_pred CCCCCCCCCHHHHHHHHHHHHh----------------hCcccCchhHHHHHHHhc
Q 047160 64 SSLKKGALSPEEDQKLINYVTS----------------RCLLRCGKSCRLCWRNYQ 103 (129)
Q Consensus 64 ~~i~kg~WT~eED~~L~~~v~~----------------~G~gRt~~qcr~Rw~~~L 103 (129)
..+....||.||-+-|+.+... |+..||-...++||+.+.
T Consensus 126 ~~l~dn~WskeETD~LF~lck~fDLRf~VIaDRyd~qq~~~sRTvEdLKeRyY~v~ 181 (445)
T KOG2656|consen 126 AHLNDNSWSKEETDYLFDLCKRFDLRFFVIADRYDNQQYKKSRTVEDLKERYYSVC 181 (445)
T ss_pred HhhccccccHHHHHHHHHHHHhcCeeEEEEeeccchhhccccccHHHHHHHHHHHH
Confidence 4556678999999999999998 446799999999998654
No 44
>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=55.50 E-value=12 Score=31.29 Aligned_cols=39 Identities=10% Similarity=0.114 Sum_probs=33.6
Q ss_pred CCCCCCCHHHHHHHHHHHHhhC-----------cccCchhHHHHHHHhcC
Q 047160 66 LKKGALSPEEDQKLINYVTSRC-----------LLRCGKSCRLCWRNYQR 104 (129)
Q Consensus 66 i~kg~WT~eED~~L~~~v~~~G-----------~gRt~~qcr~Rw~~~L~ 104 (129)
|-..-|+..|+-+|++..+..| -.|+...|+++|..+++
T Consensus 61 I~~e~WgadEEllli~~~~TlGlGNW~dIadyiGsr~kee~k~HylK~y~ 110 (432)
T COG5114 61 IGEEGWGADEELLLIECLDTLGLGNWEDIADYIGSRAKEEIKSHYLKMYD 110 (432)
T ss_pred ccCCCcCchHHHHHHHHHHhcCCCcHHHHHHHHhhhhhHHHHHHHHHHHh
Confidence 4455799999999999999966 36999999999998887
No 45
>PF11626 Rap1_C: TRF2-interacting telomeric protein/Rap1 - C terminal domain; InterPro: IPR021661 This family of proteins represents the C-terminal domain of the protein Rap-1, which plays a distinct role in silencing at the silent mating-type loci and telomeres []. The Rap-1 C terminus adopts an all-helical fold. Rap1 carries out its function by recruiting the Sir3 and Sir4 proteins to chromatin via its C-terminal domain []. ; PDB: 3K6G_C 3CZ6_A 3OWT_A.
Probab=55.10 E-value=8.8 Score=25.25 Aligned_cols=16 Identities=38% Similarity=0.636 Sum_probs=9.7
Q ss_pred CCCCCCCCCHHHHHHH
Q 047160 105 PDINRDSFTQEEDEII 120 (129)
Q Consensus 105 p~ik~~~Wt~eEd~~L 120 (129)
|....|-||+++|..|
T Consensus 43 P~n~~GiWT~eDD~~L 58 (87)
T PF11626_consen 43 PDNMPGIWTPEDDEML 58 (87)
T ss_dssp -TT-TT---HHHHHHH
T ss_pred CCCCCCCcCHHHHHHH
Confidence 6677889999999988
No 46
>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]
Probab=45.80 E-value=29 Score=29.72 Aligned_cols=35 Identities=14% Similarity=-0.046 Sum_probs=31.2
Q ss_pred CCCCCHHHHHHHHHHHHhhC----------cccCchhHHHHHHHh
Q 047160 68 KGALSPEEDQKLINYVTSRC----------LLRCGKSCRLCWRNY 102 (129)
Q Consensus 68 kg~WT~eED~~L~~~v~~~G----------~gRt~~qcr~Rw~~~ 102 (129)
--+||.+|-++...+....| |.|+-+|++-.|.+-
T Consensus 365 ~~~Ws~~e~ekFYKALs~wGtdF~LIs~lfP~R~RkqIKaKfi~E 409 (507)
T COG5118 365 ALRWSKKEIEKFYKALSIWGTDFSLISSLFPNRERKQIKAKFIKE 409 (507)
T ss_pred CCcccHHHHHHHHHHHHHhcchHHHHHHhcCchhHHHHHHHHHHH
Confidence 34799999999999999988 899999999999854
No 47
>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]
Probab=44.34 E-value=19 Score=31.42 Aligned_cols=22 Identities=9% Similarity=0.212 Sum_probs=19.7
Q ss_pred CCCCCCHHHHHHHHHHHHhcCC
Q 047160 108 NRDSFTQEEDEIIIKLHQQLRD 129 (129)
Q Consensus 108 k~~~Wt~eEd~~Ll~~v~~~G~ 129 (129)
....||.+|..+||+.++.||.
T Consensus 278 ~dk~WS~qE~~LLLEGIe~ygD 299 (531)
T COG5259 278 RDKNWSRQELLLLLEGIEMYGD 299 (531)
T ss_pred ccccccHHHHHHHHHHHHHhhh
Confidence 4559999999999999999984
No 48
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=40.96 E-value=45 Score=31.75 Aligned_cols=24 Identities=13% Similarity=0.248 Sum_probs=20.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcC
Q 047160 105 PDINRDSFTQEEDEIIIKLHQQLR 128 (129)
Q Consensus 105 p~ik~~~Wt~eEd~~Ll~~v~~~G 128 (129)
+..++..+|++||..||-.+.+||
T Consensus 922 ~~~~~~~~~~~~d~~~~~~~~~~g 945 (1033)
T PLN03142 922 GQNKGKLYNEECDRFMLCMVHKLG 945 (1033)
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhc
Confidence 344555799999999999999998
No 49
>PF09197 Rap1-DNA-bind: Rap1, DNA-binding; InterPro: IPR015280 Members of this entry, which are predominantly found in the yeast protein Rap1, assume a secondary structure consisting of a three-helix bundle and an N-terminal arm. They contain an Arg-Asp-Arg-Lys sequence that interacts with an ACAregion in the 3, region of the DNA-binding site []. ; PDB: 1IGN_A 3UKG_A.
Probab=40.00 E-value=41 Score=23.35 Aligned_cols=16 Identities=13% Similarity=0.339 Sum_probs=11.2
Q ss_pred CCCHHHHHHHHHHHHh
Q 047160 70 ALSPEEDQKLINYVTS 85 (129)
Q Consensus 70 ~WT~eED~~L~~~v~~ 85 (129)
++|++||..|-..|..
T Consensus 1 kfTA~dDY~Lc~~i~~ 16 (105)
T PF09197_consen 1 KFTADDDYALCKAIKK 16 (105)
T ss_dssp ---HHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHH
Confidence 4799999999888865
No 50
>PF11784 DUF3320: Protein of unknown function (DUF3320); InterPro: IPR021754 This family is conserved in Proteobacteria and Chlorobi families. Many members are annotated as being putative DNA helicase-related proteins.
Probab=34.86 E-value=34 Score=20.42 Aligned_cols=24 Identities=25% Similarity=0.190 Sum_probs=15.8
Q ss_pred HHHHHHHHHHhhCcccCchhHHHH
Q 047160 75 EDQKLINYVTSRCLLRCGKSCRLC 98 (129)
Q Consensus 75 ED~~L~~~v~~~G~gRt~~qcr~R 98 (129)
+|.+...+...+|..|++..+++|
T Consensus 29 ~~~L~~Ri~~a~G~~R~G~rI~~r 52 (52)
T PF11784_consen 29 EDELARRIARAWGLSRAGSRIRER 52 (52)
T ss_pred HHHHHHHHHHHcCcccchHHHhcC
Confidence 344444555568888888877764
No 51
>PF10892 DUF2688: Protein of unknown function (DUF2688); InterPro: IPR024392 Members of this protein family are annotated as KleB, and may play a role in the regulation of transcription in plasmids.
Probab=33.02 E-value=38 Score=21.07 Aligned_cols=17 Identities=24% Similarity=0.540 Sum_probs=13.2
Q ss_pred CCCCCCHHHHHHHHHHH
Q 047160 67 KKGALSPEEDQKLINYV 83 (129)
Q Consensus 67 ~kg~WT~eED~~L~~~v 83 (129)
--+=-|||||..|.+..
T Consensus 41 C~~CitpEE~~~I~e~~ 57 (60)
T PF10892_consen 41 CGDCITPEEDREILEAT 57 (60)
T ss_pred hhccCCHHHHHHHHHHH
Confidence 34457999999998864
No 52
>PF04270 Strep_his_triad: Streptococcal histidine triad protein ; InterPro: IPR006270 This entry represents a repeated sequence region that includes a His-X-X-His-X-His (histidine triad) motif, which is found in family of Streptococcal proteins. Members of the family are suggested to cleave human complement component 3, and family member PhpA has been shown in vaccine studies to be a protective antigen in mice []. ; PDB: 2CS7_C.
Probab=31.02 E-value=19 Score=22.01 Aligned_cols=12 Identities=50% Similarity=0.805 Sum_probs=4.9
Q ss_pred CCCCCcceeeec
Q 047160 3 YGFNPARIIRVH 14 (129)
Q Consensus 3 ~~~~~~~~~~~~ 14 (129)
|.|||+.|+.--
T Consensus 7 yvFdp~dI~~~~ 18 (53)
T PF04270_consen 7 YVFDPADIISET 18 (53)
T ss_dssp -B--GGG--EE-
T ss_pred ceeCHHHccccC
Confidence 789999998753
No 53
>PF04504 DUF573: Protein of unknown function, DUF573; InterPro: IPR007592 This is a family of uncharacterised proteins.
Probab=28.22 E-value=1e+02 Score=20.69 Aligned_cols=57 Identities=14% Similarity=0.166 Sum_probs=36.2
Q ss_pred CCCCHHHHHHHHHHHHhh----C--c-----------------ccCchh-------HHHHHHHhcCCCCCCC---CCCHH
Q 047160 69 GALSPEEDQKLINYVTSR----C--L-----------------LRCGKS-------CRLCWRNYQRPDINRD---SFTQE 115 (129)
Q Consensus 69 g~WT~eED~~L~~~v~~~----G--~-----------------gRt~~q-------cr~Rw~~~L~p~ik~~---~Wt~e 115 (129)
--||+|++-.|++.+-.+ | | .=+..| .+.||.+.... .+.| .++..
T Consensus 5 R~WS~eDEi~iL~gl~~~~~~~G~~p~~d~~~f~~~vk~~l~~~~s~~Ql~~KirrLK~Ky~~~~~k-~~~g~~~~~~~~ 83 (98)
T PF04504_consen 5 RLWSEEDEIVILQGLIDFRAKTGKSPQPDMNAFYDFVKGSLSFDVSKNQLYDKIRRLKKKYRNAVKK-SKNGKDPSFSKP 83 (98)
T ss_pred CCCCchHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHhhh-cccCcCCCCCCH
Confidence 369999999999877763 4 1 112222 34566655544 2233 67888
Q ss_pred HHHHHHHHHHh
Q 047160 116 EDEIIIKLHQQ 126 (129)
Q Consensus 116 Ed~~Ll~~v~~ 126 (129)
-|..+.+|..+
T Consensus 84 hd~~~f~Lsk~ 94 (98)
T PF04504_consen 84 HDRRLFELSKK 94 (98)
T ss_pred hHHHHHHHHHH
Confidence 88888888764
No 54
>PF09846 DUF2073: Uncharacterized protein conserved in archaea (DUF2073); InterPro: IPR012017 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=25.52 E-value=62 Score=22.49 Aligned_cols=18 Identities=39% Similarity=0.684 Sum_probs=14.9
Q ss_pred CCCCCHHHHHHHHHHHHh
Q 047160 68 KGALSPEEDQKLINYVTS 85 (129)
Q Consensus 68 kg~WT~eED~~L~~~v~~ 85 (129)
-+-|||+|..+|++..-.
T Consensus 26 E~GLtPeEe~~LIE~TM~ 43 (104)
T PF09846_consen 26 EEGLTPEEESKLIEMTMT 43 (104)
T ss_pred cCCCChHHHHHHHHHHHH
Confidence 456999999999987654
No 55
>PF12304 BCLP: Beta-casein like protein; InterPro: IPR020977 This entry represents eukaryotic proteins that are typically between 216 to 240 amino acids in length which have two conserved sequence motifs: VLR and TRIY. Beta-casein-like protein is associated with cell morphology and a regulation of growth pattern of tumours. It is found in adenocarcinomas of uterine cervical tissues[].
Probab=25.25 E-value=25 Score=26.93 Aligned_cols=9 Identities=44% Similarity=0.870 Sum_probs=6.9
Q ss_pred CCCCcceee
Q 047160 4 GFNPARIIR 12 (129)
Q Consensus 4 ~~~~~~~~~ 12 (129)
-||||||..
T Consensus 130 PFDpTRIY~ 138 (188)
T PF12304_consen 130 PFDPTRIYD 138 (188)
T ss_pred CCCcchHHH
Confidence 489999863
No 56
>PF05182 Fip1: Fip1 motif; InterPro: IPR007854 This short motif is about 40 amino acids in length and is found in the Fip1 protein that is a component of a Saccharomyces cerevisiae pre-mRNA polyadenylation factor that directly interacts with poly(A) polymerase []. This region of Fip1 is needed for the interaction with the Yth1 subunit of the complex and for specific polyadenylation of the cleaved mRNA precursor [].
Probab=25.02 E-value=33 Score=20.25 Aligned_cols=6 Identities=83% Similarity=1.802 Sum_probs=3.8
Q ss_pred CCCCCC
Q 047160 1 FRYGFN 6 (129)
Q Consensus 1 ~~~~~~ 6 (129)
|.||||
T Consensus 24 FNYGf~ 29 (45)
T PF05182_consen 24 FNYGFN 29 (45)
T ss_pred cCCCCC
Confidence 556666
No 57
>PF09356 Phage_BR0599: Phage conserved hypothetical protein BR0599; InterPro: IPR018964 This entry describes the C-terminal region of a family of proteins found almost exclusively in phage or in prophage regions of bacterial genomes, including the phage-like Rhodobacter capsulatus (Rhodopseudomonas capsulata) gene transfer agent, which packages DNA. An apparent exception is Wolbachia pipientis wMel, a bacterial endosymbiont of the fruit fly, which has several candidate phage-related genes physically separate from obvious prophage regions.
Probab=22.50 E-value=44 Score=21.75 Aligned_cols=19 Identities=16% Similarity=0.109 Sum_probs=15.8
Q ss_pred hCcccCchhHHHHHHHhcC
Q 047160 86 RCLLRCGKSCRLCWRNYQR 104 (129)
Q Consensus 86 ~G~gRt~~qcr~Rw~~~L~ 104 (129)
-|..++-..|+.||.|.++
T Consensus 51 ~GCDkt~~tC~~kF~N~~N 69 (80)
T PF09356_consen 51 PGCDKTFATCRAKFNNALN 69 (80)
T ss_pred eCCCCCHHHHHHHhCCccc
Confidence 3467889999999999876
No 58
>KOG2656 consensus DNA methyltransferase 1-associated protein-1 [Chromatin structure and dynamics; Transcription]
Probab=22.45 E-value=98 Score=26.57 Aligned_cols=27 Identities=15% Similarity=0.327 Sum_probs=20.9
Q ss_pred HHHHHhcCCCCCCCCCCHHHHHHHHHHHHhc
Q 047160 97 LCWRNYQRPDINRDSFTQEEDEIIIKLHQQL 127 (129)
Q Consensus 97 ~Rw~~~L~p~ik~~~Wt~eEd~~Ll~~v~~~ 127 (129)
+-|.++|+- ..||.+|-+.|++|.+.|
T Consensus 122 eEYe~~l~d----n~WskeETD~LF~lck~f 148 (445)
T KOG2656|consen 122 EEYEAHLND----NSWSKEETDYLFDLCKRF 148 (445)
T ss_pred HHHHHhhcc----ccccHHHHHHHHHHHHhc
Confidence 345555543 689999999999999876
No 59
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=22.43 E-value=1.4e+02 Score=28.50 Aligned_cols=25 Identities=16% Similarity=0.054 Sum_probs=20.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhhCc
Q 047160 64 SSLKKGALSPEEDQKLINYVTSRCL 88 (129)
Q Consensus 64 ~~i~kg~WT~eED~~L~~~v~~~G~ 88 (129)
+.-++..+|.|||..|+-.+.++|-
T Consensus 922 ~~~~~~~~~~~~d~~~~~~~~~~g~ 946 (1033)
T PLN03142 922 GQNKGKLYNEECDRFMLCMVHKLGY 946 (1033)
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhcc
Confidence 3334556999999999999999883
No 60
>PF04435 SPK: Domain of unknown function (DUF545) ; InterPro: IPR006570 SPK is a domain of unknown function found in SET and PHD domain containing proteins and protein kinases.
Probab=22.05 E-value=1.3e+02 Score=19.86 Aligned_cols=44 Identities=20% Similarity=0.235 Sum_probs=33.6
Q ss_pred HHHHHHHhhCcccCchhHHHHHHHhcCCCCC-CCCCCHHHHHHHH
Q 047160 78 KLINYVTSRCLLRCGKSCRLCWRNYQRPDIN-RDSFTQEEDEIII 121 (129)
Q Consensus 78 ~L~~~v~~~G~gRt~~qcr~Rw~~~L~p~ik-~~~Wt~eEd~~Ll 121 (129)
...+.....|..|+....++||...|.|.+- ...++.++-..|+
T Consensus 24 l~~~f~~~~~~~~~~~~l~~~~~~~l~~~i~~~~~~d~~tk~~m~ 68 (109)
T PF04435_consen 24 LWEEFKKKSGSKRSPKSLRKRFRRKLAPNIHKLSDFDLETKAKML 68 (109)
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 3444555678889999999999999988877 6678877766554
No 61
>PF08466 IRK_N: Inward rectifier potassium channel N-terminal; InterPro: IPR013673 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Inwardly-rectifying potassium channels (Kir) are the principal class of two-TM domain potassium channels. They are characterised by the property of inward-rectification, which is described as the ability to allow large inward currents and smaller outward currents. Inwardly rectifying potassium channels (Kir) are responsible for regulating diverse processes including: cellular excitability, vascular tone, heart rate, renal salt flow, and insulin release []. To date, around twenty members of this superfamily have been cloned, which can be grouped into six families by sequence similarity, and these are designated Kir1.x-6.x [, ]. Cloned Kir channel cDNAs encode proteins of between ~370-500 residues, both N- and C-termini are thought to be cytoplasmic, and the N terminus lacks a signal sequence. Kir channel alpha subunits possess only 2TM domains linked with a P-domain. Thus, Kir channels share similarity with the fifth and sixth domains, and P-domain of the other families. It is thought that four Kir subunits assemble to form a tetrameric channel complex, which may be hetero- or homomeric []. This metazoan domain is found to the N terminus of the IPR013521 from INTERPRO domain in Inward rectifier potassium channels (KIR2 or IRK2). ; PDB: 1U4F_A 2GIX_A.
Probab=20.83 E-value=20 Score=21.23 Aligned_cols=28 Identities=25% Similarity=0.316 Sum_probs=2.0
Q ss_pred CHHHHHHHHHH---HHhhCc--ccCchhHHHHH
Q 047160 72 SPEEDQKLINY---VTSRCL--LRCGKSCRLCW 99 (129)
Q Consensus 72 T~eED~~L~~~---v~~~G~--gRt~~qcr~Rw 99 (129)
|.|||-+=+.. +.-+|. ..|..||++||
T Consensus 13 S~eEdglkl~tm~~~ng~gngk~htrrk~rsRF 45 (45)
T PF08466_consen 13 SSEEDGLKLSTMPAVNGFGNGKVHTRRKCRSRF 45 (45)
T ss_dssp -----------------------------SS-S
T ss_pred eccccceeeecccccCCccCCceecccccccCC
Confidence 45666654433 333553 34777777775
Done!