Query 047160
Match_columns 129
No_of_seqs 162 out of 1245
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 14:20:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047160.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047160hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1h89_C C-MYB, MYB proto-oncoge 99.9 1E-26 3.5E-31 169.9 7.9 97 33-129 16-130 (159)
2 1h8a_C AMV V-MYB, MYB transfor 99.9 8E-26 2.7E-30 160.1 8.7 81 49-129 1-99 (128)
3 1gv2_A C-MYB, MYB proto-oncoge 99.9 2.4E-23 8.3E-28 142.5 8.7 65 65-129 1-76 (105)
4 3osg_A MYB21; transcription-DN 99.9 3.2E-23 1.1E-27 146.6 8.8 68 62-129 5-82 (126)
5 2k9n_A MYB24; R2R3 domain, DNA 99.9 3.2E-23 1.1E-27 142.7 8.3 62 68-129 1-73 (107)
6 3zqc_A MYB3; transcription-DNA 99.9 1.3E-22 4.3E-27 144.2 8.3 62 68-129 2-74 (131)
7 2dim_A Cell division cycle 5-l 99.8 9.7E-22 3.3E-26 126.1 4.2 55 63-117 4-69 (70)
8 1h89_C C-MYB, MYB proto-oncoge 99.8 5.3E-21 1.8E-25 139.5 4.5 65 65-129 3-78 (159)
9 3zqc_A MYB3; transcription-DNA 99.8 1E-19 3.5E-24 129.2 5.1 85 31-115 10-111 (131)
10 1gv2_A C-MYB, MYB proto-oncoge 99.7 5.1E-18 1.8E-22 115.9 7.2 76 31-106 12-104 (105)
11 2k9n_A MYB24; R2R3 domain, DNA 99.7 4.7E-18 1.6E-22 116.8 4.7 75 32-106 10-101 (107)
12 2roh_A RTBP1, telomere binding 99.7 3.9E-17 1.3E-21 115.3 7.5 66 64-129 27-113 (122)
13 1h8a_C AMV V-MYB, MYB transfor 99.7 4E-17 1.4E-21 115.1 7.0 78 29-106 33-127 (128)
14 2juh_A Telomere binding protei 99.7 3.9E-17 1.3E-21 115.1 6.7 67 63-129 12-99 (121)
15 3osg_A MYB21; transcription-DN 99.7 4.6E-17 1.6E-21 114.8 5.7 75 29-104 17-108 (126)
16 2d9a_A B-MYB, MYB-related prot 99.7 9.3E-17 3.2E-21 99.8 5.7 46 63-108 3-59 (60)
17 1gvd_A MYB proto-oncogene prot 99.6 2.1E-16 7.4E-21 95.5 5.2 41 66-106 1-52 (52)
18 1ity_A TRF1; helix-turn-helix, 99.6 3.3E-16 1.1E-20 100.0 5.3 51 63-113 5-68 (69)
19 1guu_A C-MYB, MYB proto-oncoge 99.6 3.9E-16 1.3E-20 94.3 4.9 41 66-106 1-52 (52)
20 2din_A Cell division cycle 5-l 99.6 3.7E-16 1.3E-20 98.9 2.3 50 62-111 3-61 (66)
21 3sjm_A Telomeric repeat-bindin 99.6 3.2E-15 1.1E-19 94.5 4.6 43 66-108 9-64 (64)
22 1x41_A Transcriptional adaptor 99.5 2.2E-14 7.5E-19 89.2 5.7 44 64-107 4-58 (60)
23 1w0t_A Telomeric repeat bindin 99.5 3.1E-14 1E-18 86.4 4.8 38 67-104 1-51 (53)
24 2cu7_A KIAA1915 protein; nucle 99.5 2.4E-14 8.3E-19 92.0 3.8 47 63-109 4-60 (72)
25 2yum_A ZZZ3 protein, zinc fing 99.5 4.7E-14 1.6E-18 91.1 5.1 49 63-111 3-67 (75)
26 1ign_A Protein (RAP1); RAP1,ye 99.5 8.7E-14 3E-18 107.7 6.9 63 64-126 4-111 (246)
27 2llk_A Cyclin-D-binding MYB-li 99.4 2.3E-13 7.9E-18 88.1 5.6 53 56-109 11-72 (73)
28 2aje_A Telomere repeat-binding 99.4 3.4E-13 1.2E-17 92.8 6.0 67 63-129 8-95 (105)
29 2elk_A SPCC24B10.08C protein; 99.4 4E-13 1.4E-17 83.0 5.2 40 64-103 5-56 (58)
30 2ckx_A NGTRF1, telomere bindin 99.4 1.7E-12 5.8E-17 85.9 6.9 58 69-126 1-79 (83)
31 2ltp_A Nuclear receptor corepr 98.8 1.2E-12 4.2E-17 87.4 0.0 43 63-105 11-63 (89)
32 2cqr_A RSGI RUH-043, DNAJ homo 99.1 6E-11 2.1E-15 76.6 5.4 43 62-104 12-68 (73)
33 2yus_A SWI/SNF-related matrix- 99.1 1.2E-10 4.2E-15 76.2 5.4 42 61-102 11-62 (79)
34 2llk_A Cyclin-D-binding MYB-li 99.0 2.3E-10 7.8E-15 73.9 3.5 35 95-129 9-43 (73)
35 2cjj_A Radialis; plant develop 98.8 5E-09 1.7E-13 70.5 4.4 37 67-103 7-57 (93)
36 1x58_A Hypothetical protein 49 98.7 2.7E-08 9.2E-13 62.2 4.7 39 67-105 7-58 (62)
37 2dim_A Cell division cycle 5-l 98.6 1E-08 3.5E-13 65.0 1.0 46 31-76 17-69 (70)
38 2din_A Cell division cycle 5-l 98.5 8.1E-08 2.8E-12 60.1 3.6 28 102-129 2-29 (66)
39 1fex_A TRF2-interacting telome 98.3 1.4E-06 4.7E-11 53.8 5.0 37 68-104 2-58 (59)
40 2eqr_A N-COR1, N-COR, nuclear 98.2 2E-06 7E-11 53.1 5.4 38 66-103 10-57 (61)
41 2cqq_A RSGI RUH-037, DNAJ homo 98.2 1.4E-06 4.8E-11 55.8 4.7 40 65-104 5-57 (72)
42 2cu7_A KIAA1915 protein; nucle 98.2 1E-06 3.4E-11 56.0 3.9 28 102-129 2-29 (72)
43 2d9a_A B-MYB, MYB-related prot 98.2 1.3E-06 4.5E-11 53.4 3.9 25 104-128 3-27 (60)
44 1gvd_A MYB proto-oncogene prot 98.1 2.4E-06 8.3E-11 50.8 3.4 23 107-129 1-23 (52)
45 1guu_A C-MYB, MYB proto-oncoge 98.1 2.5E-06 8.6E-11 50.7 3.1 23 107-129 1-23 (52)
46 2roh_A RTBP1, telomere binding 98.1 3.1E-06 1.1E-10 59.4 4.0 69 25-94 33-118 (122)
47 1x41_A Transcriptional adaptor 98.0 7E-06 2.4E-10 50.3 3.7 25 104-128 3-27 (60)
48 1w0t_A Telomeric repeat bindin 97.9 6.3E-06 2.2E-10 49.2 3.3 21 108-128 1-21 (53)
49 1ity_A TRF1; helix-turn-helix, 97.9 8.7E-06 3E-10 51.1 3.5 27 102-128 3-29 (69)
50 3sjm_A Telomeric repeat-bindin 97.9 9.7E-06 3.3E-10 50.6 3.3 23 107-129 9-31 (64)
51 2yum_A ZZZ3 protein, zinc fing 97.9 1.2E-05 4.2E-10 51.1 3.7 25 104-128 3-27 (75)
52 2elk_A SPCC24B10.08C protein; 97.8 1.7E-05 5.9E-10 48.3 3.8 25 104-128 4-28 (58)
53 2ltp_A Nuclear receptor corepr 96.9 5E-06 1.7E-10 55.0 0.0 29 101-129 8-36 (89)
54 1ign_A Protein (RAP1); RAP1,ye 97.7 3.6E-05 1.2E-09 59.6 4.5 51 35-85 20-111 (246)
55 2iw5_B Protein corest, REST co 97.7 4.3E-05 1.5E-09 58.7 4.6 39 66-104 131-179 (235)
56 1wgx_A KIAA1903 protein; MYB D 97.6 5.8E-05 2E-09 48.4 4.4 37 68-104 8-58 (73)
57 3hm5_A DNA methyltransferase 1 97.6 8.2E-05 2.8E-09 49.8 4.5 38 67-104 29-81 (93)
58 2juh_A Telomere binding protei 97.5 0.0001 3.5E-09 51.5 4.8 63 25-87 19-98 (121)
59 1x58_A Hypothetical protein 49 97.4 0.00012 4.2E-09 45.5 3.1 22 108-129 7-28 (62)
60 2ebi_A DNA binding protein GT- 97.3 0.00023 7.7E-09 46.3 4.2 38 67-104 3-64 (86)
61 3hm5_A DNA methyltransferase 1 97.3 0.00018 6.2E-09 48.1 3.3 33 93-129 18-50 (93)
62 2yus_A SWI/SNF-related matrix- 97.2 0.00031 1.1E-08 45.4 3.6 24 106-129 15-38 (79)
63 1ug2_A 2610100B20RIK gene prod 97.1 0.00047 1.6E-08 45.9 4.1 34 70-103 35-81 (95)
64 2lr8_A CAsp8-associated protei 96.1 8.4E-05 2.9E-09 47.0 0.0 35 70-104 16-62 (70)
65 2cqr_A RSGI RUH-043, DNAJ homo 97.0 0.00066 2.2E-08 43.3 3.6 24 105-128 14-37 (73)
66 4eef_G F-HB80.4, designed hema 96.2 0.0014 4.8E-08 42.0 1.0 33 68-100 20-66 (74)
67 4iej_A DNA methyltransferase 1 95.8 0.012 4.2E-07 39.1 4.5 38 67-104 29-81 (93)
68 1fex_A TRF2-interacting telome 95.5 0.012 4E-07 35.9 3.1 19 109-127 2-20 (59)
69 2eqr_A N-COR1, N-COR, nuclear 95.3 0.015 5.2E-07 35.3 3.3 22 108-129 11-32 (61)
70 2yqk_A Arginine-glutamic acid 95.2 0.04 1.4E-06 33.7 5.1 39 63-101 4-53 (63)
71 2cqq_A RSGI RUH-037, DNAJ homo 95.0 0.024 8.3E-07 35.8 3.7 23 106-128 5-27 (72)
72 1ofc_X ISWI protein; nuclear p 94.0 0.15 5.2E-06 40.4 7.0 22 107-128 210-231 (304)
73 2xag_B REST corepressor 1; ami 93.9 0.06 2.1E-06 45.3 4.6 37 66-102 378-424 (482)
74 2ckx_A NGTRF1, telomere bindin 93.4 0.1 3.4E-06 33.8 4.1 54 31-84 8-78 (83)
75 4a69_C Nuclear receptor corepr 92.7 0.15 5.1E-06 33.6 4.2 36 67-102 42-87 (94)
76 2yqk_A Arginine-glutamic acid 91.5 0.23 8E-06 30.2 3.8 25 104-128 4-28 (63)
77 2crg_A Metastasis associated p 89.8 0.54 1.9E-05 29.1 4.5 35 67-101 7-52 (70)
78 4iej_A DNA methyltransferase 1 88.6 0.45 1.5E-05 31.5 3.5 27 98-128 23-49 (93)
79 1ofc_X ISWI protein; nuclear p 88.1 0.92 3.2E-05 35.9 5.7 22 67-88 211-232 (304)
80 2iw5_B Protein corest, REST co 87.8 0.34 1.2E-05 37.1 2.9 21 109-129 133-153 (235)
81 1irz_A ARR10-B; helix-turn-hel 85.4 2.1 7.1E-05 26.3 5.1 23 66-88 5-27 (64)
82 1wgx_A KIAA1903 protein; MYB D 84.8 1.1 3.7E-05 28.3 3.7 21 108-128 7-27 (73)
83 1ug2_A 2610100B20RIK gene prod 84.5 0.67 2.3E-05 30.6 2.7 19 111-129 35-53 (95)
84 2lr8_A CAsp8-associated protei 84.8 0.19 6.6E-06 31.6 0.0 19 111-129 16-34 (70)
85 4b4c_A Chromodomain-helicase-D 84.3 1.2 4.2E-05 32.4 4.4 23 68-90 134-156 (211)
86 2aje_A Telomere repeat-binding 83.7 0.94 3.2E-05 30.4 3.2 64 24-87 14-94 (105)
87 2cjj_A Radialis; plant develop 79.2 0.86 2.9E-05 29.9 1.7 32 31-62 16-50 (93)
88 4b4c_A Chromodomain-helicase-D 76.6 2.2 7.4E-05 31.1 3.4 18 111-128 136-153 (211)
89 2crg_A Metastasis associated p 72.3 3.2 0.00011 25.5 2.9 20 109-128 8-27 (70)
90 3cz6_A DNA-binding protein RAP 69.6 2.3 8E-05 30.8 2.1 27 64-90 110-144 (168)
91 2xb0_X Chromo domain-containin 68.0 3.5 0.00012 32.0 2.9 20 70-89 170-189 (270)
92 4a69_C Nuclear receptor corepr 63.4 5.8 0.0002 25.8 2.9 20 109-128 43-62 (94)
93 1irz_A ARR10-B; helix-turn-hel 63.1 8.9 0.0003 23.4 3.5 22 107-128 5-26 (64)
94 2y9y_A Imitation switch protei 57.0 7.3 0.00025 31.6 3.0 21 108-128 227-247 (374)
95 2xb0_X Chromo domain-containin 53.5 8.2 0.00028 29.9 2.7 18 111-128 170-187 (270)
96 3cz6_A DNA-binding protein RAP 49.4 53 0.0018 23.7 6.2 28 94-121 98-126 (168)
97 2cs7_A Pneumococcal histidine 49.2 5 0.00017 23.9 0.7 13 3-15 10-22 (55)
98 2xag_B REST corepressor 1; ami 48.2 12 0.00042 31.3 3.1 20 109-128 380-399 (482)
99 2y9y_A Imitation switch protei 47.7 20 0.0007 29.0 4.3 21 67-87 227-247 (374)
100 3h8k_B Autocrine motility fact 39.5 19 0.00064 18.4 1.9 11 71-81 1-11 (28)
101 2p1m_A SKP1-like protein 1A; F 36.0 68 0.0023 22.1 5.1 28 88-122 126-153 (160)
102 3v7d_A Suppressor of kinetocho 28.2 80 0.0027 22.1 4.4 27 88-121 134-160 (169)
103 3d2y_A N-acetylmuramoyl-L-alan 26.1 1.5E+02 0.0051 22.2 5.8 36 94-129 225-260 (261)
104 2k0m_A Uncharacterized protein 21.9 53 0.0018 21.7 2.2 37 90-126 15-51 (104)
105 2hzd_A Transcriptional enhance 21.8 1.4E+02 0.0048 18.9 4.1 14 86-99 55-68 (82)
106 2ast_A S-phase kinase-associat 21.2 1E+02 0.0034 21.1 3.7 28 88-122 127-154 (159)
No 1
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.93 E-value=1e-26 Score=169.94 Aligned_cols=97 Identities=30% Similarity=0.502 Sum_probs=66.8
Q ss_pred hhHHHHhhhCCCChHHHhhhhCCCCccccc-------CCCCCCCCCCHHHHHHHHHHHHhhC-----------cccCchh
Q 047160 33 RQESKINAQSTMNWFQVKKLKFDHEAQGRQ-------KSSLKKGALSPEEDQKLINYVTSRC-----------LLRCGKS 94 (129)
Q Consensus 33 ~~~~~v~~~g~~~W~~Ia~~~~~~r~~~~~-------k~~i~kg~WT~eED~~L~~~v~~~G-----------~gRt~~q 94 (129)
.+...|..+|..+|..||+.+++++..+|. .|.+++|+||+|||++|+++|..+| +|||++|
T Consensus 16 ~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~q 95 (159)
T 1h89_C 16 KLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQ 95 (159)
T ss_dssp ---------------------------CHHHHHHTTTCTTCCCSCCCHHHHHHHHHHHHHHCSCCHHHHHHTSTTCCHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHccCCCcCCCCCChHHHHHHHHHHHHhCcccHHHHHHHcCCCCHHH
Confidence 344567788889999999999888887776 3999999999999999999999988 5999999
Q ss_pred HHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHhcCC
Q 047160 95 CRLCWRNYQRPDINRDSFTQEEDEIIIKLHQQLRD 129 (129)
Q Consensus 95 cr~Rw~~~L~p~ik~~~Wt~eEd~~Ll~~v~~~G~ 129 (129)
|++||.++|+|.+++++||+|||.+|+++|.+||+
T Consensus 96 cr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~g~ 130 (159)
T 1h89_C 96 CRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGN 130 (159)
T ss_dssp HHHHHHHTTCTTSCCSCCCHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHhCccccccCCChHHHHHHHHHHHHHCC
Confidence 99999999999999999999999999999999996
No 2
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.93 E-value=8e-26 Score=160.05 Aligned_cols=81 Identities=33% Similarity=0.541 Sum_probs=64.4
Q ss_pred HhhhhCCCCcccccC-------CCCCCCCCCHHHHHHHHHHHHhhC-----------cccCchhHHHHHHHhcCCCCCCC
Q 047160 49 VKKLKFDHEAQGRQK-------SSLKKGALSPEEDQKLINYVTSRC-----------LLRCGKSCRLCWRNYQRPDINRD 110 (129)
Q Consensus 49 Ia~~~~~~r~~~~~k-------~~i~kg~WT~eED~~L~~~v~~~G-----------~gRt~~qcr~Rw~~~L~p~ik~~ 110 (129)
||+.+++++..+|.. |.+++|+||+|||++|+++|..+| +|||++||++||+++|+|.++++
T Consensus 1 Ia~~~~~Rt~~qC~~Rw~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~ 80 (128)
T 1h8a_C 1 MEAVIKNRTDVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNPEVKKT 80 (128)
T ss_dssp ---------------------CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHTTCSSSCCS
T ss_pred CccccCCCCHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHhcccccccc
Confidence 678888888877763 999999999999999999999988 69999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhcCC
Q 047160 111 SFTQEEDEIIIKLHQQLRD 129 (129)
Q Consensus 111 ~Wt~eEd~~Ll~~v~~~G~ 129 (129)
+||+|||..|+++|.+||+
T Consensus 81 ~WT~eEd~~L~~~~~~~G~ 99 (128)
T 1h8a_C 81 SWTEEEDRIIYQAHKRLGN 99 (128)
T ss_dssp CCCHHHHHHHHHHHHHHCS
T ss_pred cCCHHHHHHHHHHHHHHCc
Confidence 9999999999999999996
No 3
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.89 E-value=2.4e-23 Score=142.48 Aligned_cols=65 Identities=40% Similarity=0.669 Sum_probs=62.5
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhC-----------cccCchhHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHhcCC
Q 047160 65 SLKKGALSPEEDQKLINYVTSRC-----------LLRCGKSCRLCWRNYQRPDINRDSFTQEEDEIIIKLHQQLRD 129 (129)
Q Consensus 65 ~i~kg~WT~eED~~L~~~v~~~G-----------~gRt~~qcr~Rw~~~L~p~ik~~~Wt~eEd~~Ll~~v~~~G~ 129 (129)
.+++|+||+|||++|+++|..+| ++||++||++||.++|+|.+++++||+|||..|+++|.+||+
T Consensus 1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~ 76 (105)
T 1gv2_A 1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGN 76 (105)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHHSS
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHHHhCC
Confidence 46899999999999999999988 699999999999999999999999999999999999999996
No 4
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.89 E-value=3.2e-23 Score=146.56 Aligned_cols=68 Identities=31% Similarity=0.529 Sum_probs=64.4
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHhhC----------cccCchhHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHhcCC
Q 047160 62 QKSSLKKGALSPEEDQKLINYVTSRC----------LLRCGKSCRLCWRNYQRPDINRDSFTQEEDEIIIKLHQQLRD 129 (129)
Q Consensus 62 ~k~~i~kg~WT~eED~~L~~~v~~~G----------~gRt~~qcr~Rw~~~L~p~ik~~~Wt~eEd~~Ll~~v~~~G~ 129 (129)
.++..++|+||+|||++|+++|..+| ++||++||++||.++|+|.+++++||+|||.+|+++|.+||+
T Consensus 5 ~~~~~kk~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v~~~G~ 82 (126)
T 3osg_A 5 NLKAAKKQKFTPEEDEMLKRAVAQHGSDWKMIAATFPNRNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKIQEYGR 82 (126)
T ss_dssp C-CBCSSCCCCHHHHHHHHHHHHHHTTCHHHHHHTCTTCCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHHHHHCS
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHCc
Confidence 45778999999999999999999988 799999999999999999999999999999999999999996
No 5
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.89 E-value=3.2e-23 Score=142.75 Aligned_cols=62 Identities=29% Similarity=0.474 Sum_probs=60.1
Q ss_pred CCCCCHHHHHHHHHHHHhhC-----------cccCchhHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHhcCC
Q 047160 68 KGALSPEEDQKLINYVTSRC-----------LLRCGKSCRLCWRNYQRPDINRDSFTQEEDEIIIKLHQQLRD 129 (129)
Q Consensus 68 kg~WT~eED~~L~~~v~~~G-----------~gRt~~qcr~Rw~~~L~p~ik~~~Wt~eEd~~Ll~~v~~~G~ 129 (129)
||+||+|||++|+++|..+| ++||++||++||.++|+|.+++++||+|||..|+++|.+||+
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~~~~G~ 73 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYAEYGP 73 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTTSCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHHHHTCS
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCCCCHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHHhCc
Confidence 68999999999999999988 699999999999999999999999999999999999999996
No 6
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.88 E-value=1.3e-22 Score=144.24 Aligned_cols=62 Identities=32% Similarity=0.504 Sum_probs=60.3
Q ss_pred CCCCCHHHHHHHHHHHHhhC-----------cccCchhHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHhcCC
Q 047160 68 KGALSPEEDQKLINYVTSRC-----------LLRCGKSCRLCWRNYQRPDINRDSFTQEEDEIIIKLHQQLRD 129 (129)
Q Consensus 68 kg~WT~eED~~L~~~v~~~G-----------~gRt~~qcr~Rw~~~L~p~ik~~~Wt~eEd~~Ll~~v~~~G~ 129 (129)
+|+||+|||++|+++|..+| ++||+.||++||.++|+|.+++++||+|||.+|+++|.+||+
T Consensus 2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~ 74 (131)
T 3zqc_A 2 KGPFTEAEDDLIREYVKENGPQNWPRITSFLPNRSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNYLKLGS 74 (131)
T ss_dssp CSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCTTSCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHHHHHSCS
T ss_pred CCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHCCCCHHHHHHHHhhccCccccCCCCCHHHHHHHHHHHHHHCc
Confidence 79999999999999999988 699999999999999999999999999999999999999996
No 7
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=9.7e-22 Score=126.11 Aligned_cols=55 Identities=24% Similarity=0.372 Sum_probs=52.6
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhhC-----------cccCchhHHHHHHHhcCCCCCCCCCCHHHH
Q 047160 63 KSSLKKGALSPEEDQKLINYVTSRC-----------LLRCGKSCRLCWRNYQRPDINRDSFTQEED 117 (129)
Q Consensus 63 k~~i~kg~WT~eED~~L~~~v~~~G-----------~gRt~~qcr~Rw~~~L~p~ik~~~Wt~eEd 117 (129)
.+.+++|+||+|||++|+++|.++| ++||++||++||+++|+|.+++++||+|||
T Consensus 4 ~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~L~p~i~~~~wt~eEd 69 (70)
T 2dim_A 4 GSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSGPSS 69 (70)
T ss_dssp CSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHTSCSSSCCCCSCCSCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHHcCCcccCCCCChHhc
Confidence 4788999999999999999999988 699999999999999999999999999998
No 8
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.82 E-value=5.3e-21 Score=139.52 Aligned_cols=65 Identities=31% Similarity=0.478 Sum_probs=35.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhC-----------cccCchhHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHhcCC
Q 047160 65 SLKKGALSPEEDQKLINYVTSRC-----------LLRCGKSCRLCWRNYQRPDINRDSFTQEEDEIIIKLHQQLRD 129 (129)
Q Consensus 65 ~i~kg~WT~eED~~L~~~v~~~G-----------~gRt~~qcr~Rw~~~L~p~ik~~~Wt~eEd~~Ll~~v~~~G~ 129 (129)
.+++++||+|||++|+++|..+| ++||+.||++||.++|+|.+++++||+|||..|+++|.+||+
T Consensus 3 ~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~v~~~g~ 78 (159)
T 1h89_C 3 HLGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIKLVQKYGP 78 (159)
T ss_dssp ----------------------------------------CHHHHHHTTTCTTCCCSCCCHHHHHHHHHHHHHHCS
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHccCCCcCCCCCChHHHHHHHHHHHHhCc
Confidence 35789999999999999999988 699999999999999999999999999999999999999995
No 9
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.78 E-value=1e-19 Score=129.22 Aligned_cols=85 Identities=15% Similarity=0.235 Sum_probs=75.6
Q ss_pred hhhhHHHHhhhCCCChHHHhhhhCCCCccccc-------CCCCCCCCCCHHHHHHHHHHHHhhC----------cccCch
Q 047160 31 SKRQESKINAQSTMNWFQVKKLKFDHEAQGRQ-------KSSLKKGALSPEEDQKLINYVTSRC----------LLRCGK 93 (129)
Q Consensus 31 s~~~~~~v~~~g~~~W~~Ia~~~~~~r~~~~~-------k~~i~kg~WT~eED~~L~~~v~~~G----------~gRt~~ 93 (129)
...+...|..+|..+|..||..+++++..+|. .|.+++|+||+|||++|+++|.++| +|||++
T Consensus 10 D~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~ 89 (131)
T 3zqc_A 10 DDLIREYVKENGPQNWPRITSFLPNRSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNYLKLGSKWSVIAKLIPGRTDN 89 (131)
T ss_dssp HHHHHHHHHHHCSCCGGGGTTSCTTSCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHHHHHSCSCHHHHTTTSTTCCHH
T ss_pred HHHHHHHHHHhCcCCHHHHHHHHCCCCHHHHHHHHhhccCccccCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHH
Confidence 34455678889999999999999888887776 3999999999999999999999988 799999
Q ss_pred hHHHHHHHhcCCCCCCCCCCHH
Q 047160 94 SCRLCWRNYQRPDINRDSFTQE 115 (129)
Q Consensus 94 qcr~Rw~~~L~p~ik~~~Wt~e 115 (129)
||++||+++|++.+..++|+.+
T Consensus 90 ~~k~rw~~~l~~~~~~~~~~~~ 111 (131)
T 3zqc_A 90 AIKNRWNSSISKRISTNSNHKE 111 (131)
T ss_dssp HHHHHHHHTTGGGCCCCTTSCC
T ss_pred HHHHHHHHHHHHHhhcCCCccc
Confidence 9999999999999999888754
No 10
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.73 E-value=5.1e-18 Score=115.87 Aligned_cols=76 Identities=14% Similarity=0.167 Sum_probs=66.0
Q ss_pred hhhhHHHHhhhCCCChHHHhhhhCCCCccccc-------CCCCCCCCCCHHHHHHHHHHHHhhC----------cccCch
Q 047160 31 SKRQESKINAQSTMNWFQVKKLKFDHEAQGRQ-------KSSLKKGALSPEEDQKLINYVTSRC----------LLRCGK 93 (129)
Q Consensus 31 s~~~~~~v~~~g~~~W~~Ia~~~~~~r~~~~~-------k~~i~kg~WT~eED~~L~~~v~~~G----------~gRt~~ 93 (129)
.......|..+|..+|..||+.+++++..+|. .|.+++|+||+|||++|+++|.++| +|||+.
T Consensus 12 D~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~ 91 (105)
T 1gv2_A 12 DQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDN 91 (105)
T ss_dssp HHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHHSSCHHHHHTTCTTCCHH
T ss_pred HHHHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHH
Confidence 34455678889999999999999888887776 3999999999999999999999988 799999
Q ss_pred hHHHHHHHhcCCC
Q 047160 94 SCRLCWRNYQRPD 106 (129)
Q Consensus 94 qcr~Rw~~~L~p~ 106 (129)
||++||+.+|+..
T Consensus 92 ~~k~rw~~~~~~~ 104 (105)
T 1gv2_A 92 AIKNHWNSTMRRK 104 (105)
T ss_dssp HHHHHHHHHTC--
T ss_pred HHHHHHHHHHhcc
Confidence 9999999998764
No 11
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.71 E-value=4.7e-18 Score=116.79 Aligned_cols=75 Identities=17% Similarity=0.271 Sum_probs=66.3
Q ss_pred hhhHHHHhhhCCCChHHHhhhhCCCCccccc-------CCCCCCCCCCHHHHHHHHHHHHhhC----------cccCchh
Q 047160 32 KRQESKINAQSTMNWFQVKKLKFDHEAQGRQ-------KSSLKKGALSPEEDQKLINYVTSRC----------LLRCGKS 94 (129)
Q Consensus 32 ~~~~~~v~~~g~~~W~~Ia~~~~~~r~~~~~-------k~~i~kg~WT~eED~~L~~~v~~~G----------~gRt~~q 94 (129)
..+...|..+|..+|..||..+++++..+|. .|.+++|+||+|||++|+++|.++| +|||++|
T Consensus 10 ~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~ 89 (107)
T 2k9n_A 10 LKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYAEYGPKWNKISKFLKNRSDNN 89 (107)
T ss_dssp HHHHHHHHHHCSSCHHHHHHHTTTSCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHH
T ss_pred HHHHHHHHHHCCCCHHHHhhhcCCCCHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHHhCcCHHHHHHHCCCCCHHH
Confidence 3455678889999999999999988877776 4999999999999999999999999 7999999
Q ss_pred HHHHHHHhcCCC
Q 047160 95 CRLCWRNYQRPD 106 (129)
Q Consensus 95 cr~Rw~~~L~p~ 106 (129)
|++||+.+++..
T Consensus 90 ~k~rw~~l~r~~ 101 (107)
T 2k9n_A 90 IRNRWMMIARHR 101 (107)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhhH
Confidence 999999888653
No 12
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.69 E-value=3.9e-17 Score=115.28 Aligned_cols=66 Identities=12% Similarity=0.101 Sum_probs=62.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhhC---------------cccCchhHHHHHHHhc-----CCCCCCCCCCHHH-HHHHHH
Q 047160 64 SSLKKGALSPEEDQKLINYVTSRC---------------LLRCGKSCRLCWRNYQ-----RPDINRDSFTQEE-DEIIIK 122 (129)
Q Consensus 64 ~~i~kg~WT~eED~~L~~~v~~~G---------------~gRt~~qcr~Rw~~~L-----~p~ik~~~Wt~eE-d~~Ll~ 122 (129)
...++++||+|||+.|+++|++|| ++||+.||++||.|+| +|.++++.|+++| +..|++
T Consensus 27 ~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~~~~p~~kr~~~~p~e~~~~v~~ 106 (122)
T 2roh_A 27 QRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTASIAPQQRRGAPVPQELLDRVLA 106 (122)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHHHSCTTTCCCSSCCHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCccccCCCCCCHHHHHHHHH
Confidence 556899999999999999999988 3899999999999999 8999999999999 899999
Q ss_pred HHHhcCC
Q 047160 123 LHQQLRD 129 (129)
Q Consensus 123 ~v~~~G~ 129 (129)
++..|||
T Consensus 107 ~h~~~g~ 113 (122)
T 2roh_A 107 AQAYWSV 113 (122)
T ss_dssp HHHHHHS
T ss_pred HHHHHhh
Confidence 9999997
No 13
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.69 E-value=4e-17 Score=115.15 Aligned_cols=78 Identities=14% Similarity=0.180 Sum_probs=67.3
Q ss_pred hhhhhhHHHHhhhCCCChHHHhhhhCCCCccccc-------CCCCCCCCCCHHHHHHHHHHHHhhC----------cccC
Q 047160 29 TMSKRQESKINAQSTMNWFQVKKLKFDHEAQGRQ-------KSSLKKGALSPEEDQKLINYVTSRC----------LLRC 91 (129)
Q Consensus 29 ~~s~~~~~~v~~~g~~~W~~Ia~~~~~~r~~~~~-------k~~i~kg~WT~eED~~L~~~v~~~G----------~gRt 91 (129)
.-.......+..+|..+|..||..+++++..+|. .|.+++|+||+|||++|+++|.++| +|||
T Consensus 33 eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt 112 (128)
T 1h8a_C 33 EEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRT 112 (128)
T ss_dssp HHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHTTCSSSCCSCCCHHHHHHHHHHHHHHCSCHHHHGGGSTTCC
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHCcCHHHHHHHCCCCC
Confidence 3344455678889999999999999988887765 4999999999999999999999988 7999
Q ss_pred chhHHHHHHHhcCCC
Q 047160 92 GKSCRLCWRNYQRPD 106 (129)
Q Consensus 92 ~~qcr~Rw~~~L~p~ 106 (129)
+.||++||+.+|+..
T Consensus 113 ~~~~k~r~~~~~~~~ 127 (128)
T 1h8a_C 113 DNAVKNHWNSTMRRK 127 (128)
T ss_dssp HHHHHHHHHTTTTC-
T ss_pred HHHHHHHHHHHHhcc
Confidence 999999999988753
No 14
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.69 E-value=3.9e-17 Score=115.14 Aligned_cols=67 Identities=15% Similarity=0.154 Sum_probs=63.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhhC---------------cccCchhHHHHHHHhcC-----CCCCCC-CCCHHHHHHHH
Q 047160 63 KSSLKKGALSPEEDQKLINYVTSRC---------------LLRCGKSCRLCWRNYQR-----PDINRD-SFTQEEDEIII 121 (129)
Q Consensus 63 k~~i~kg~WT~eED~~L~~~v~~~G---------------~gRt~~qcr~Rw~~~L~-----p~ik~~-~Wt~eEd~~Ll 121 (129)
.+..++++||+|||+.|+++|+++| ++||++||++||+++|+ |.++++ +|+++|+..|+
T Consensus 12 ~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~~~~p~~krg~~~p~e~~~rv~ 91 (121)
T 2juh_A 12 SQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRVL 91 (121)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHHHTCSTTCCCSCCCHHHHHHHH
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhhccCCcccCCCCCCHHHHHHHH
Confidence 4778999999999999999999988 39999999999999998 999999 99999999999
Q ss_pred HHHHhcCC
Q 047160 122 KLHQQLRD 129 (129)
Q Consensus 122 ~~v~~~G~ 129 (129)
+++..+||
T Consensus 92 ~~h~~~gn 99 (121)
T 2juh_A 92 AAHAYWSQ 99 (121)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHcc
Confidence 99999986
No 15
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.67 E-value=4.6e-17 Score=114.81 Aligned_cols=75 Identities=12% Similarity=0.178 Sum_probs=65.5
Q ss_pred hhhhhhHHHHhhhCCCChHHHhhhhCCCCccccc-------CCCCCCCCCCHHHHHHHHHHHHhhC----------cccC
Q 047160 29 TMSKRQESKINAQSTMNWFQVKKLKFDHEAQGRQ-------KSSLKKGALSPEEDQKLINYVTSRC----------LLRC 91 (129)
Q Consensus 29 ~~s~~~~~~v~~~g~~~W~~Ia~~~~~~r~~~~~-------k~~i~kg~WT~eED~~L~~~v~~~G----------~gRt 91 (129)
.-...+...|..+|. +|..||+.+++++..+|. .|.+++|+||+|||++|+++|.++| +|||
T Consensus 17 eED~~L~~~v~~~G~-~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v~~~G~~W~~Ia~~l~gRt 95 (126)
T 3osg_A 17 EEDEMLKRAVAQHGS-DWKMIAATFPNRNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKIQEYGRQWAIIAKFFPGRT 95 (126)
T ss_dssp HHHHHHHHHHHHHTT-CHHHHHHTCTTCCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHHHHHCSCHHHHHTTSTTCC
T ss_pred HHHHHHHHHHHHhCC-CHHHHHHHcCCCCHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCC
Confidence 334455677888887 999999999888887776 3999999999999999999999988 7999
Q ss_pred chhHHHHHHHhcC
Q 047160 92 GKSCRLCWRNYQR 104 (129)
Q Consensus 92 ~~qcr~Rw~~~L~ 104 (129)
+.||++||+.+++
T Consensus 96 ~~~~k~rw~~l~~ 108 (126)
T 3osg_A 96 DIHIKNRWVTISN 108 (126)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998875
No 16
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.66 E-value=9.3e-17 Score=99.80 Aligned_cols=46 Identities=22% Similarity=0.226 Sum_probs=43.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhhC-----------cccCchhHHHHHHHhcCCCCC
Q 047160 63 KSSLKKGALSPEEDQKLINYVTSRC-----------LLRCGKSCRLCWRNYQRPDIN 108 (129)
Q Consensus 63 k~~i~kg~WT~eED~~L~~~v~~~G-----------~gRt~~qcr~Rw~~~L~p~ik 108 (129)
.|.+++++||+|||++|+++|.++| ++||++||++||+++|+|.++
T Consensus 3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~i~ 59 (60)
T 2d9a_A 3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLSGPSS 59 (60)
T ss_dssp SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHTSCSSSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHHcCCccC
Confidence 3788999999999999999999988 699999999999999999986
No 17
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.64 E-value=2.1e-16 Score=95.53 Aligned_cols=41 Identities=44% Similarity=0.665 Sum_probs=38.7
Q ss_pred CCCCCCCHHHHHHHHHHHHhhC-----------cccCchhHHHHHHHhcCCC
Q 047160 66 LKKGALSPEEDQKLINYVTSRC-----------LLRCGKSCRLCWRNYQRPD 106 (129)
Q Consensus 66 i~kg~WT~eED~~L~~~v~~~G-----------~gRt~~qcr~Rw~~~L~p~ 106 (129)
+++|+||+|||++|+++|.++| +|||++||++||.++|+|+
T Consensus 1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1gvd_A 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPE 52 (52)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHHcCcC
Confidence 5799999999999999999988 6999999999999999995
No 18
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.63 E-value=3.3e-16 Score=99.98 Aligned_cols=51 Identities=20% Similarity=0.145 Sum_probs=46.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhhC-----------c--ccCchhHHHHHHHhcCCCCCCCCCC
Q 047160 63 KSSLKKGALSPEEDQKLINYVTSRC-----------L--LRCGKSCRLCWRNYQRPDINRDSFT 113 (129)
Q Consensus 63 k~~i~kg~WT~eED~~L~~~v~~~G-----------~--gRt~~qcr~Rw~~~L~p~ik~~~Wt 113 (129)
++..++++||+|||++|+++|.++| + +||++||++||+++|+|.+.++..+
T Consensus 5 ~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k~~~~ 68 (69)
T 1ity_A 5 HRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISSDSE 68 (69)
T ss_dssp TCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCCCCCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCCCCCC
Confidence 3667899999999999999999998 5 8999999999999999999998764
No 19
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.62 E-value=3.9e-16 Score=94.30 Aligned_cols=41 Identities=29% Similarity=0.460 Sum_probs=37.5
Q ss_pred CCCCCCCHHHHHHHHHHHHhhC-----------cccCchhHHHHHHHhcCCC
Q 047160 66 LKKGALSPEEDQKLINYVTSRC-----------LLRCGKSCRLCWRNYQRPD 106 (129)
Q Consensus 66 i~kg~WT~eED~~L~~~v~~~G-----------~gRt~~qcr~Rw~~~L~p~ 106 (129)
+++++||+|||++|+++|.++| ++||++||++||+++|+|+
T Consensus 1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1guu_A 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPE 52 (52)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHHcCcC
Confidence 4789999999999999999988 6999999999999999995
No 20
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=3.7e-16 Score=98.86 Aligned_cols=50 Identities=28% Similarity=0.264 Sum_probs=46.0
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHhhC---------cccCchhHHHHHHHhcCCCCCCCC
Q 047160 62 QKSSLKKGALSPEEDQKLINYVTSRC---------LLRCGKSCRLCWRNYQRPDINRDS 111 (129)
Q Consensus 62 ~k~~i~kg~WT~eED~~L~~~v~~~G---------~gRt~~qcr~Rw~~~L~p~ik~~~ 111 (129)
+.|.+++++||+|||++|+++|..+| +|||++||++||+++|+|.++++.
T Consensus 3 L~P~~~k~~WT~eED~~L~~~~~~~g~~W~~Ia~~~gRt~~qcr~Rw~~~l~~~~~~~~ 61 (66)
T 2din_A 3 SGSSGKKTEWSREEEEKLLHLAKLMPTQWRTIAPIIGRTAAQCLEHYEFLLDKAAQRDS 61 (66)
T ss_dssp CSSSSSCCCCCHHHHHHHHHHHHHCTTCHHHHHHHHSSCHHHHHHHHHHHHHHHHHSSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCCCHHHHhcccCcCHHHHHHHHHHHhChHhcCCC
Confidence 56899999999999999999999988 799999999999999999877653
No 21
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.55 E-value=3.2e-15 Score=94.48 Aligned_cols=43 Identities=23% Similarity=0.195 Sum_probs=39.1
Q ss_pred CCCCCCCHHHHHHHHHHHHhhC-----------c--ccCchhHHHHHHHhcCCCCC
Q 047160 66 LKKGALSPEEDQKLINYVTSRC-----------L--LRCGKSCRLCWRNYQRPDIN 108 (129)
Q Consensus 66 i~kg~WT~eED~~L~~~v~~~G-----------~--gRt~~qcr~Rw~~~L~p~ik 108 (129)
.++++||+|||++|+++|.+|| + +||+.||++||.++++|.++
T Consensus 9 ~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~glN 64 (64)
T 3sjm_A 9 TKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGMN 64 (64)
T ss_dssp -CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTCC
T ss_pred CCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccCCC
Confidence 4789999999999999999988 2 89999999999999999874
No 22
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.51 E-value=2.2e-14 Score=89.23 Aligned_cols=44 Identities=14% Similarity=0.184 Sum_probs=40.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhhC-----------cccCchhHHHHHHHhcCCCC
Q 047160 64 SSLKKGALSPEEDQKLINYVTSRC-----------LLRCGKSCRLCWRNYQRPDI 107 (129)
Q Consensus 64 ~~i~kg~WT~eED~~L~~~v~~~G-----------~gRt~~qcr~Rw~~~L~p~i 107 (129)
+.+.+++||+|||++|+++|..+| ++||++||++||+++|.+..
T Consensus 4 ~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~~~~ 58 (60)
T 1x41_A 4 GSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFSGPS 58 (60)
T ss_dssp CCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTTCSS
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHccCCC
Confidence 678999999999999999999988 69999999999999998754
No 23
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.48 E-value=3.1e-14 Score=86.38 Aligned_cols=38 Identities=26% Similarity=0.234 Sum_probs=35.5
Q ss_pred CCCCCCHHHHHHHHHHHHhhC-----------c--ccCchhHHHHHHHhcC
Q 047160 67 KKGALSPEEDQKLINYVTSRC-----------L--LRCGKSCRLCWRNYQR 104 (129)
Q Consensus 67 ~kg~WT~eED~~L~~~v~~~G-----------~--gRt~~qcr~Rw~~~L~ 104 (129)
++++||+|||++|+++|..+| + +||++||++||.++|.
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k 51 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK 51 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHc
Confidence 579999999999999999998 4 8999999999999985
No 24
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.47 E-value=2.4e-14 Score=91.97 Aligned_cols=47 Identities=15% Similarity=-0.028 Sum_probs=43.9
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhhC----------cccCchhHHHHHHHhcCCCCCC
Q 047160 63 KSSLKKGALSPEEDQKLINYVTSRC----------LLRCGKSCRLCWRNYQRPDINR 109 (129)
Q Consensus 63 k~~i~kg~WT~eED~~L~~~v~~~G----------~gRt~~qcr~Rw~~~L~p~ik~ 109 (129)
.|.+++++||+|||++|+++|..+| ++||++||++||+++|++.++.
T Consensus 4 ~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~~ 60 (72)
T 2cu7_A 4 GSSGYSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKC 60 (72)
T ss_dssp CCSSCCCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCS
T ss_pred CCCcCCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHHHhc
Confidence 5889999999999999999999999 7999999999999999887766
No 25
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.47 E-value=4.7e-14 Score=91.07 Aligned_cols=49 Identities=16% Similarity=0.001 Sum_probs=45.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhhC----------------cccCchhHHHHHHHhcCCCCCCCC
Q 047160 63 KSSLKKGALSPEEDQKLINYVTSRC----------------LLRCGKSCRLCWRNYQRPDINRDS 111 (129)
Q Consensus 63 k~~i~kg~WT~eED~~L~~~v~~~G----------------~gRt~~qcr~Rw~~~L~p~ik~~~ 111 (129)
+|.+.+++||+|||++|+++|..+| ++||++||++||+++|.+.++.+.
T Consensus 3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~~k~g~ 67 (75)
T 2yum_A 3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLTKAGI 67 (75)
T ss_dssp CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGGSTTCS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCC
Confidence 5888999999999999999999988 599999999999999999887764
No 26
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.46 E-value=8.7e-14 Score=107.66 Aligned_cols=63 Identities=22% Similarity=0.338 Sum_probs=55.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhhC----------------cccCchhHHHHHHHhcCCCCC-------------------
Q 047160 64 SSLKKGALSPEEDQKLINYVTSRC----------------LLRCGKSCRLCWRNYQRPDIN------------------- 108 (129)
Q Consensus 64 ~~i~kg~WT~eED~~L~~~v~~~G----------------~gRt~~qcr~Rw~~~L~p~ik------------------- 108 (129)
+.+++++||+|||+.|+++|.++| +|||++|||+||+++|.+.+.
T Consensus 4 ~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~~ln~vy~~ded~~Li~d~~Gn~ 83 (246)
T 1ign_A 4 PSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDGNL 83 (246)
T ss_dssp ----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTSCB
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhhhcccccccCcchhhhhccCCCc
Confidence 456899999999999999999975 799999999999999999986
Q ss_pred ----------CCCCCHHHHHHHHHHHHh
Q 047160 109 ----------RDSFTQEEDEIIIKLHQQ 126 (129)
Q Consensus 109 ----------~~~Wt~eEd~~Ll~~v~~ 126 (129)
+..||.+||..|+..+.+
T Consensus 84 ikis~lp~siK~rftaeeDy~L~~~i~~ 111 (246)
T 1ign_A 84 IKTKVLPPSIKRKFSADEDYTLAIAVKK 111 (246)
T ss_dssp CEESSCCCCSCCCCCHHHHHHHHHHHHH
T ss_pred eeeeccCccccCccchhccHHHHHHHHH
Confidence 789999999999998876
No 27
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.42 E-value=2.3e-13 Score=88.07 Aligned_cols=53 Identities=25% Similarity=0.149 Sum_probs=39.4
Q ss_pred CCcccccCCCCCCCCCCHHHHHHHHHHHHhhC---------cccCchhHHHHHHHhcCCCCCC
Q 047160 56 HEAQGRQKSSLKKGALSPEEDQKLINYVTSRC---------LLRCGKSCRLCWRNYQRPDINR 109 (129)
Q Consensus 56 ~r~~~~~k~~i~kg~WT~eED~~L~~~v~~~G---------~gRt~~qcr~Rw~~~L~p~ik~ 109 (129)
.+......|++++|+||+|||++|+++|.++| .|||++||++||+. |....+.
T Consensus 11 ~~~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~kW~~IA~~lgRt~~q~knRw~~-L~~~~~~ 72 (73)
T 2llk_A 11 RENLYFQGDRNHVGKYTPEEIEKLKELRIKHGNDWATIGAALGRSASSVKDRCRL-MKDTCNT 72 (73)
T ss_dssp --------CCCCCCSSCHHHHHHHHHHHHHHSSCHHHHHHHHTSCHHHHHHHHHH-CSCCCSC
T ss_pred cceeeecCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHhCCCHHHHHHHHHH-HHHHccC
Confidence 33445567999999999999999999999988 39999999999984 5544443
No 28
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.40 E-value=3.4e-13 Score=92.85 Aligned_cols=67 Identities=15% Similarity=0.111 Sum_probs=58.4
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhhC---------------cccCchhHHHHHHHhc-----CCCCCCCCCCHHHHHH-HH
Q 047160 63 KSSLKKGALSPEEDQKLINYVTSRC---------------LLRCGKSCRLCWRNYQ-----RPDINRDSFTQEEDEI-II 121 (129)
Q Consensus 63 k~~i~kg~WT~eED~~L~~~v~~~G---------------~gRt~~qcr~Rw~~~L-----~p~ik~~~Wt~eEd~~-Ll 121 (129)
....++++||+|||+.|++.|+++| ++||+.||++||.++| +|.++++.-+++|-.. ++
T Consensus 8 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~~~~p~~~rg~~~P~~~l~rv~ 87 (105)
T 2aje_A 8 PQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAKISPQQRRGEPVPQELLNRVL 87 (105)
T ss_dssp -CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTTTCCTTTTTCCSCCCHHHHHHH
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCcccccCCCCCHHHHHHHH
Confidence 3667899999999999999999988 3899999999999999 7999999888887766 88
Q ss_pred HHHHhcCC
Q 047160 122 KLHQQLRD 129 (129)
Q Consensus 122 ~~v~~~G~ 129 (129)
+|+..+|+
T Consensus 88 ~~~~~~~~ 95 (105)
T 2aje_A 88 NAHGYWTQ 95 (105)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88877653
No 29
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.39 E-value=4e-13 Score=83.01 Aligned_cols=40 Identities=20% Similarity=0.131 Sum_probs=36.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhhC-----------c-ccCchhHHHHHHHhc
Q 047160 64 SSLKKGALSPEEDQKLINYVTSRC-----------L-LRCGKSCRLCWRNYQ 103 (129)
Q Consensus 64 ~~i~kg~WT~eED~~L~~~v~~~G-----------~-gRt~~qcr~Rw~~~L 103 (129)
..+.+++||+|||++|+++|.++| + +||++||++||.+++
T Consensus 5 ~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 5 SSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY 56 (58)
T ss_dssp CCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence 346789999999999999999988 6 899999999999875
No 30
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.36 E-value=1.7e-12 Score=85.90 Aligned_cols=58 Identities=17% Similarity=0.179 Sum_probs=50.6
Q ss_pred CCCCHHHHHHHHHHHHhhC---------------cccCchhHHHHHHHhc-----CCCCCCC-CCCHHHHHHHHHHHHh
Q 047160 69 GALSPEEDQKLINYVTSRC---------------LLRCGKSCRLCWRNYQ-----RPDINRD-SFTQEEDEIIIKLHQQ 126 (129)
Q Consensus 69 g~WT~eED~~L~~~v~~~G---------------~gRt~~qcr~Rw~~~L-----~p~ik~~-~Wt~eEd~~Ll~~v~~ 126 (129)
.+||+|||+.|+++|+++| ++||++||++||+|+| +|.++++ +..++....++.++..
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~~~~p~~~~~~~~p~~~~~rv~~~~a~ 79 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRVLAAHAY 79 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhccCCcccccCCCCCHHHHHHHHHHHHH
Confidence 4899999999999999988 4899999999999998 7877776 7778887888888764
No 31
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=98.85 E-value=1.2e-12 Score=87.36 Aligned_cols=43 Identities=14% Similarity=0.135 Sum_probs=40.3
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhhC----------cccCchhHHHHHHHhcCC
Q 047160 63 KSSLKKGALSPEEDQKLINYVTSRC----------LLRCGKSCRLCWRNYQRP 105 (129)
Q Consensus 63 k~~i~kg~WT~eED~~L~~~v~~~G----------~gRt~~qcr~Rw~~~L~p 105 (129)
.|.+.+|+||+|||++|+++|..+| +|||++||++||+++|+.
T Consensus 11 ~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~IA~~l~gRt~~q~k~r~~~~lrk 63 (89)
T 2ltp_A 11 RENLYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKKR 63 (89)
Confidence 5888999999999999999999988 799999999999999874
No 32
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.14 E-value=6e-11 Score=76.64 Aligned_cols=43 Identities=5% Similarity=0.057 Sum_probs=39.1
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHhhC--------------cccCchhHHHHHHHhcC
Q 047160 62 QKSSLKKGALSPEEDQKLINYVTSRC--------------LLRCGKSCRLCWRNYQR 104 (129)
Q Consensus 62 ~k~~i~kg~WT~eED~~L~~~v~~~G--------------~gRt~~qcr~Rw~~~L~ 104 (129)
.++.+.+++||+|||.+|++++..+| ||||++||++||++++.
T Consensus 12 ~~~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 12 ERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVS 68 (73)
T ss_dssp CTTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHS
T ss_pred cccccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 45778999999999999999999987 79999999999998875
No 33
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.09 E-value=1.2e-10 Score=76.15 Aligned_cols=42 Identities=14% Similarity=0.137 Sum_probs=38.0
Q ss_pred ccCCCCCCCCCCHHHHHHHHHHHHhhC----------cccCchhHHHHHHHh
Q 047160 61 RQKSSLKKGALSPEEDQKLINYVTSRC----------LLRCGKSCRLCWRNY 102 (129)
Q Consensus 61 ~~k~~i~kg~WT~eED~~L~~~v~~~G----------~gRt~~qcr~Rw~~~ 102 (129)
+......+++||+|||++|+++|.++| ++||+.||++||.++
T Consensus 11 ~~~~~~~~~~WT~eEd~~Ll~~v~~~G~~W~~IA~~v~~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 11 KSKGASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRL 62 (79)
T ss_dssp CCCSSCCSCCCCHHHHHHHHHHHHHSSSCHHHHHHHHSSCCHHHHHHHHTTS
T ss_pred CccccccCCCcCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHh
Confidence 345677899999999999999999988 799999999999988
No 34
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=98.99 E-value=2.3e-10 Score=73.91 Aligned_cols=35 Identities=17% Similarity=0.067 Sum_probs=24.6
Q ss_pred HHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHhcCC
Q 047160 95 CRLCWRNYQRPDINRDSFTQEEDEIIIKLHQQLRD 129 (129)
Q Consensus 95 cr~Rw~~~L~p~ik~~~Wt~eEd~~Ll~~v~~~G~ 129 (129)
.--||.++|+|++++++||+|||++|+++|.+||+
T Consensus 9 ~~~~~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~ 43 (73)
T 2llk_A 9 SGRENLYFQGDRNHVGKYTPEEIEKLKELRIKHGN 43 (73)
T ss_dssp ----------CCCCCCSSCHHHHHHHHHHHHHHSS
T ss_pred cCcceeeecCCCCCCCCCCHHHHHHHHHHHHHHCC
Confidence 34589999999999999999999999999999996
No 35
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=98.78 E-value=5e-09 Score=70.46 Aligned_cols=37 Identities=8% Similarity=-0.013 Sum_probs=33.2
Q ss_pred CCCCCCHHHHHHHHHHHHhhC--------------cccCchhHHHHHHHhc
Q 047160 67 KKGALSPEEDQKLINYVTSRC--------------LLRCGKSCRLCWRNYQ 103 (129)
Q Consensus 67 ~kg~WT~eED~~L~~~v~~~G--------------~gRt~~qcr~Rw~~~L 103 (129)
.+++||+|||++|.+++..+| +|||++||++||.+++
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~ 57 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILV 57 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 467999999999999999875 7999999999999875
No 36
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=98.66 E-value=2.7e-08 Score=62.19 Aligned_cols=39 Identities=13% Similarity=-0.003 Sum_probs=36.0
Q ss_pred CCCCCCHHHHHHHHHHHHhhC-------------cccCchhHHHHHHHhcCC
Q 047160 67 KKGALSPEEDQKLINYVTSRC-------------LLRCGKSCRLCWRNYQRP 105 (129)
Q Consensus 67 ~kg~WT~eED~~L~~~v~~~G-------------~gRt~~qcr~Rw~~~L~p 105 (129)
.+.+||+|||+.|++.|+++| ++||+.++++||++....
T Consensus 7 ~r~~WT~EE~~~L~~gV~k~G~~W~~I~~~y~f~~~RT~VdLKdk~r~L~k~ 58 (62)
T 1x58_A 7 GRKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRLISG 58 (62)
T ss_dssp CSSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHHHHhHhHHHHHHhCCCccCcccchHHHHHHHHHhc
Confidence 678999999999999999998 699999999999998754
No 37
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.58 E-value=1e-08 Score=64.97 Aligned_cols=46 Identities=15% Similarity=0.211 Sum_probs=39.0
Q ss_pred hhhhHHHHhhhCCCChHHHhhhhCCCCccccc-------CCCCCCCCCCHHHH
Q 047160 31 SKRQESKINAQSTMNWFQVKKLKFDHEAQGRQ-------KSSLKKGALSPEED 76 (129)
Q Consensus 31 s~~~~~~v~~~g~~~W~~Ia~~~~~~r~~~~~-------k~~i~kg~WT~eED 76 (129)
...+...|..+|..+|..||.++++++..+|+ +|.+++++||+|||
T Consensus 17 D~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~L~p~i~~~~wt~eEd 69 (70)
T 2dim_A 17 DEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSGPSS 69 (70)
T ss_dssp HHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHTSCSSSCCCCSCCSCC
T ss_pred HHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHHcCCcccCCCCChHhc
Confidence 34456678889989999999999988777776 49999999999998
No 38
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.50 E-value=8.1e-08 Score=60.10 Aligned_cols=28 Identities=14% Similarity=0.318 Sum_probs=27.0
Q ss_pred hcCCCCCCCCCCHHHHHHHHHHHHhcCC
Q 047160 102 YQRPDINRDSFTQEEDEIIIKLHQQLRD 129 (129)
Q Consensus 102 ~L~p~ik~~~Wt~eEd~~Ll~~v~~~G~ 129 (129)
+|+|.+++++||+|||.+|+++|.+||+
T Consensus 2 ~L~P~~~k~~WT~eED~~L~~~~~~~g~ 29 (66)
T 2din_A 2 SSGSSGKKTEWSREEEEKLLHLAKLMPT 29 (66)
T ss_dssp CCSSSSSCCCCCHHHHHHHHHHHHHCTT
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 7999999999999999999999999996
No 39
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=98.26 E-value=1.4e-06 Score=53.77 Aligned_cols=37 Identities=16% Similarity=0.190 Sum_probs=33.3
Q ss_pred CCCCCHHHHHHHHHHHHhh--------C------------cccCchhHHHHHHHhcC
Q 047160 68 KGALSPEEDQKLINYVTSR--------C------------LLRCGKSCRLCWRNYQR 104 (129)
Q Consensus 68 kg~WT~eED~~L~~~v~~~--------G------------~gRt~~qcr~Rw~~~L~ 104 (129)
+.+||+|||+.|++.|.++ | ++||-.+||+||.++|.
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHcc
Confidence 5689999999999999886 3 79999999999999875
No 40
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.24 E-value=2e-06 Score=53.08 Aligned_cols=38 Identities=8% Similarity=0.019 Sum_probs=34.1
Q ss_pred CCCCCCCHHHHHHHHHHHHhhC----------cccCchhHHHHHHHhc
Q 047160 66 LKKGALSPEEDQKLINYVTSRC----------LLRCGKSCRLCWRNYQ 103 (129)
Q Consensus 66 i~kg~WT~eED~~L~~~v~~~G----------~gRt~~qcr~Rw~~~L 103 (129)
...++||+|||+++.+++..+| ++||..||.++|....
T Consensus 10 ~~~~~WT~eE~~~F~~~~~~~gk~w~~Ia~~l~~rt~~~~v~~Yy~~K 57 (61)
T 2eqr_A 10 QFMNVWTDHEKEIFKDKFIQHPKNFGLIASYLERKSVPDCVLYYYLTK 57 (61)
T ss_dssp SCCCSCCHHHHHHHHHHHHHSTTCHHHHHHHCTTSCHHHHHHHHHHHT
T ss_pred ccCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHhc
Confidence 3568999999999999999988 8999999999998654
No 41
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.23 E-value=1.4e-06 Score=55.80 Aligned_cols=40 Identities=13% Similarity=-0.023 Sum_probs=35.1
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhC-------------cccCchhHHHHHHHhcC
Q 047160 65 SLKKGALSPEEDQKLINYVTSRC-------------LLRCGKSCRLCWRNYQR 104 (129)
Q Consensus 65 ~i~kg~WT~eED~~L~~~v~~~G-------------~gRt~~qcr~Rw~~~L~ 104 (129)
..+.+.||.|||++|..++..++ +|||.+||+++|..+.+
T Consensus 5 ~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~lgRt~~eV~~~y~~L~~ 57 (72)
T 2cqq_A 5 SSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHELGRSVTDVTTKAKQLKD 57 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 44678999999999999999976 58999999999997764
No 42
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.22 E-value=1e-06 Score=56.03 Aligned_cols=28 Identities=14% Similarity=0.039 Sum_probs=26.1
Q ss_pred hcCCCCCCCCCCHHHHHHHHHHHHhcCC
Q 047160 102 YQRPDINRDSFTQEEDEIIIKLHQQLRD 129 (129)
Q Consensus 102 ~L~p~ik~~~Wt~eEd~~Ll~~v~~~G~ 129 (129)
.++|.+++++||+|||.+|+++|.+||+
T Consensus 2 s~~p~~~~~~WT~eEd~~l~~~~~~~G~ 29 (72)
T 2cu7_A 2 SSGSSGYSVKWTIEEKELFEQGLAKFGR 29 (72)
T ss_dssp CCCCSSCCCCCCHHHHHHHHHHHHHTCS
T ss_pred CCCCCcCCCCCCHHHHHHHHHHHHHHCc
Confidence 3689999999999999999999999996
No 43
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=98.20 E-value=1.3e-06 Score=53.44 Aligned_cols=25 Identities=28% Similarity=0.339 Sum_probs=24.0
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhcC
Q 047160 104 RPDINRDSFTQEEDEIIIKLHQQLR 128 (129)
Q Consensus 104 ~p~ik~~~Wt~eEd~~Ll~~v~~~G 128 (129)
+|.+++++||+|||.+|+++|.+||
T Consensus 3 ~p~~~k~~Wt~eED~~L~~~v~~~G 27 (60)
T 2d9a_A 3 SGSSGKVKWTHEEDEQLRALVRQFG 27 (60)
T ss_dssp SCCCCCSCCCHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhC
Confidence 5889999999999999999999999
No 44
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=98.09 E-value=2.4e-06 Score=50.79 Aligned_cols=23 Identities=35% Similarity=0.530 Sum_probs=21.5
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCC
Q 047160 107 INRDSFTQEEDEIIIKLHQQLRD 129 (129)
Q Consensus 107 ik~~~Wt~eEd~~Ll~~v~~~G~ 129 (129)
+++++||+|||..|+++|.+||+
T Consensus 1 l~k~~Wt~eED~~L~~~v~~~G~ 23 (52)
T 1gvd_A 1 LIKGPWTKEEDQRLIKLVQKYGP 23 (52)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHCT
T ss_pred CCCCCCCHHHHHHHHHHHHHHCc
Confidence 57899999999999999999995
No 45
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=98.06 E-value=2.5e-06 Score=50.66 Aligned_cols=23 Identities=35% Similarity=0.479 Sum_probs=20.2
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCC
Q 047160 107 INRDSFTQEEDEIIIKLHQQLRD 129 (129)
Q Consensus 107 ik~~~Wt~eEd~~Ll~~v~~~G~ 129 (129)
+++++||+|||..|+++|.+||+
T Consensus 1 i~~~~Wt~eED~~L~~~v~~~G~ 23 (52)
T 1guu_A 1 LGKTRWTREEDEKLKKLVEQNGT 23 (52)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCS
T ss_pred CCCCCCCHHHHHHHHHHHHHhCC
Confidence 57899999999999999999995
No 46
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=98.06 E-value=3.1e-06 Score=59.39 Aligned_cols=69 Identities=14% Similarity=0.151 Sum_probs=53.8
Q ss_pred cchhhhhhhhHHHHhhhCCCChHHHhhhh----CCCCccccc------------CCCCCCCCCCHHH-HHHHHHHHHhhC
Q 047160 25 PSLVTMSKRQESKINAQSTMNWFQVKKLK----FDHEAQGRQ------------KSSLKKGALSPEE-DQKLINYVTSRC 87 (129)
Q Consensus 25 ps~~~~s~~~~~~v~~~g~~~W~~Ia~~~----~~~r~~~~~------------k~~i~kg~WT~eE-D~~L~~~v~~~G 87 (129)
|....-.......|..+|..+|..|+... .+++..+|. .|.+++|.|+++| |..|++++..+|
T Consensus 33 ~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~~~~p~~kr~~~~p~e~~~~v~~~h~~~g 112 (122)
T 2roh_A 33 PFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTASIAPQQRRGAPVPQELLDRVLAAQAYWS 112 (122)
T ss_dssp CCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHHHSCTTTCCCSSCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCccccCCCCCCHHHHHHHHHHHHHHh
Confidence 34445555666778999999999999985 445554544 3899999999999 999999999999
Q ss_pred cccCchh
Q 047160 88 LLRCGKS 94 (129)
Q Consensus 88 ~gRt~~q 94 (129)
+|..+|
T Consensus 113 -~~~~~~ 118 (122)
T 2roh_A 113 -VDSSGR 118 (122)
T ss_dssp -SSCSCC
T ss_pred -hHHhhh
Confidence 666655
No 47
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=97.95 E-value=7e-06 Score=50.32 Aligned_cols=25 Identities=12% Similarity=0.143 Sum_probs=23.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhcC
Q 047160 104 RPDINRDSFTQEEDEIIIKLHQQLR 128 (129)
Q Consensus 104 ~p~ik~~~Wt~eEd~~Ll~~v~~~G 128 (129)
.|.+.+++||+|||.+|+++|.+||
T Consensus 3 s~~~~~~~WT~eED~~L~~~v~~~G 27 (60)
T 1x41_A 3 SGSSGDPSWTAQEEMALLEAVMDCG 27 (60)
T ss_dssp CCCCCCSSSCHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHC
Confidence 4688999999999999999999999
No 48
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=97.94 E-value=6.3e-06 Score=49.22 Aligned_cols=21 Identities=19% Similarity=0.216 Sum_probs=19.9
Q ss_pred CCCCCCHHHHHHHHHHHHhcC
Q 047160 108 NRDSFTQEEDEIIIKLHQQLR 128 (129)
Q Consensus 108 k~~~Wt~eEd~~Ll~~v~~~G 128 (129)
++++||+|||..|+++|.+||
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G 21 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYG 21 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHC
T ss_pred CCCCCCHHHHHHHHHHHHHHC
Confidence 578999999999999999999
No 49
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=97.90 E-value=8.7e-06 Score=51.13 Aligned_cols=27 Identities=15% Similarity=0.117 Sum_probs=24.6
Q ss_pred hcCCCCCCCCCCHHHHHHHHHHHHhcC
Q 047160 102 YQRPDINRDSFTQEEDEIIIKLHQQLR 128 (129)
Q Consensus 102 ~L~p~ik~~~Wt~eEd~~Ll~~v~~~G 128 (129)
...|..++++||+|||..|+++|.+||
T Consensus 3 ~~~~~~~r~~WT~eED~~L~~~v~~~G 29 (69)
T 1ity_A 3 EKHRARKRQAWLWEEDKNLRSGVRKYG 29 (69)
T ss_dssp CTTCSSSCCCCCHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHC
Confidence 356788899999999999999999999
No 50
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=97.86 E-value=9.7e-06 Score=50.57 Aligned_cols=23 Identities=22% Similarity=0.264 Sum_probs=20.7
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCC
Q 047160 107 INRDSFTQEEDEIIIKLHQQLRD 129 (129)
Q Consensus 107 ik~~~Wt~eEd~~Ll~~v~~~G~ 129 (129)
.++++||+|||+.|+++|.+||.
T Consensus 9 ~kk~~WT~eED~~L~~~V~~~G~ 31 (64)
T 3sjm_A 9 TKKQKWTVEESEWVKAGVQKYGE 31 (64)
T ss_dssp -CCCCCCHHHHHHHHHHHHHHCT
T ss_pred CCCCCCCHHHHHHHHHHHHccCC
Confidence 47889999999999999999994
No 51
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.86 E-value=1.2e-05 Score=51.14 Aligned_cols=25 Identities=16% Similarity=0.143 Sum_probs=23.9
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhcC
Q 047160 104 RPDINRDSFTQEEDEIIIKLHQQLR 128 (129)
Q Consensus 104 ~p~ik~~~Wt~eEd~~Ll~~v~~~G 128 (129)
+|.+.+++||+|||.+|+++|.+||
T Consensus 3 ~p~~~~~~WT~eEd~~L~~~v~~~g 27 (75)
T 2yum_A 3 SGSSGNQLWTVEEQKKLEQLLIKYP 27 (75)
T ss_dssp CCCCCSSCCCHHHHHHHHHHHHHSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhC
Confidence 5889999999999999999999999
No 52
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=97.82 E-value=1.7e-05 Score=48.31 Aligned_cols=25 Identities=12% Similarity=0.221 Sum_probs=22.7
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhcC
Q 047160 104 RPDINRDSFTQEEDEIIIKLHQQLR 128 (129)
Q Consensus 104 ~p~ik~~~Wt~eEd~~Ll~~v~~~G 128 (129)
+..+.+++||+|||.+|+++|.+||
T Consensus 4 ~~p~~~~~WT~eED~~L~~~v~~~G 28 (58)
T 2elk_A 4 GSSGFDENWGADEELLLIDACETLG 28 (58)
T ss_dssp CCCSCCCCCCHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHC
Confidence 4567789999999999999999999
No 53
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=96.89 E-value=5e-06 Score=55.01 Aligned_cols=29 Identities=17% Similarity=0.064 Sum_probs=26.8
Q ss_pred HhcCCCCCCCCCCHHHHHHHHHHHHhcCC
Q 047160 101 NYQRPDINRDSFTQEEDEIIIKLHQQLRD 129 (129)
Q Consensus 101 ~~L~p~ik~~~Wt~eEd~~Ll~~v~~~G~ 129 (129)
..++|.+++++||+|||.+|+++|.+||+
T Consensus 8 ~~~~p~~~~~~WT~eEd~~l~~~~~~~G~ 36 (89)
T 2ltp_A 8 SSGRENLYFQGWTEEEMGTAKKGLLEHGR 36 (89)
Confidence 45789999999999999999999999996
No 54
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=97.68 E-value=3.6e-05 Score=59.57 Aligned_cols=51 Identities=18% Similarity=0.191 Sum_probs=38.6
Q ss_pred HHHHhhhCCC-----ChHHHhhhhCCCCccccc-------CCCCC-----------------------------CCCCCH
Q 047160 35 ESKINAQSTM-----NWFQVKKLKFDHEAQGRQ-------KSSLK-----------------------------KGALSP 73 (129)
Q Consensus 35 ~~~v~~~g~~-----~W~~Ia~~~~~~r~~~~~-------k~~i~-----------------------------kg~WT~ 73 (129)
.+.+..+|.. .|..||++|++++..+|+ ++.+. +.+||.
T Consensus 20 le~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~~ln~vy~~ded~~Li~d~~Gn~ikis~lp~siK~rfta 99 (246)
T 1ign_A 20 LDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDGNLIKTKVLPPSIKRKFSA 99 (246)
T ss_dssp HHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTSCBCEESSCCCCSCCCCCH
T ss_pred HHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhhhcccccccCcchhhhhccCCCceeeeccCccccCccch
Confidence 3445566543 399999999988777665 25554 889999
Q ss_pred HHHHHHHHHHHh
Q 047160 74 EEDQKLINYVTS 85 (129)
Q Consensus 74 eED~~L~~~v~~ 85 (129)
|||-.|...+.+
T Consensus 100 eeDy~L~~~i~~ 111 (246)
T 1ign_A 100 DEDYTLAIAVKK 111 (246)
T ss_dssp HHHHHHHHHHHH
T ss_pred hccHHHHHHHHH
Confidence 999999998765
No 55
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=97.66 E-value=4.3e-05 Score=58.71 Aligned_cols=39 Identities=13% Similarity=0.084 Sum_probs=35.6
Q ss_pred CCCCCCCHHHHHHHHHHHHhhC----------cccCchhHHHHHHHhcC
Q 047160 66 LKKGALSPEEDQKLINYVTSRC----------LLRCGKSCRLCWRNYQR 104 (129)
Q Consensus 66 i~kg~WT~eED~~L~~~v~~~G----------~gRt~~qcr~Rw~~~L~ 104 (129)
...++||+||+.++++++..|| ++||..||++.|+++.+
T Consensus 131 k~s~~WTeEE~~lFleAl~kYGKDW~~IAk~VgTKT~~QcKnfY~~~kK 179 (235)
T 2iw5_B 131 KCNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRR 179 (235)
T ss_dssp CCCSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTT
T ss_pred ccCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 4567999999999999999999 79999999999998865
No 56
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=97.64 E-value=5.8e-05 Score=48.40 Aligned_cols=37 Identities=22% Similarity=0.126 Sum_probs=32.2
Q ss_pred CCCCCHHHHHHHHHHHHhhC--------------cccCchhHHHHHHHhcC
Q 047160 68 KGALSPEEDQKLINYVTSRC--------------LLRCGKSCRLCWRNYQR 104 (129)
Q Consensus 68 kg~WT~eED~~L~~~v~~~G--------------~gRt~~qcr~Rw~~~L~ 104 (129)
.+.||.+||.+|..++..+. +|||..+|+.||...++
T Consensus 8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~~ 58 (73)
T 1wgx_A 8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPR 58 (73)
T ss_dssp SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSS
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence 45799999999999888754 68999999999998764
No 57
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=97.58 E-value=8.2e-05 Score=49.81 Aligned_cols=38 Identities=11% Similarity=0.031 Sum_probs=33.3
Q ss_pred CCCCCCHHHHHHHHHHHHhhC---------------cccCchhHHHHHHHhcC
Q 047160 67 KKGALSPEEDQKLINYVTSRC---------------LLRCGKSCRLCWRNYQR 104 (129)
Q Consensus 67 ~kg~WT~eED~~L~~~v~~~G---------------~gRt~~qcr~Rw~~~L~ 104 (129)
..++||.||+..|++++.++| ++||..++++||..+.+
T Consensus 29 ~~~~WTkEETd~Lf~L~~~fdlRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~ 81 (93)
T 3hm5_A 29 HDDAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICA 81 (93)
T ss_dssp CBTTBCHHHHHHHHHHHHHTTTCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCeeeehhhhccCCCCCCCHHHHHHHHHHHHH
Confidence 348999999999999999976 37999999999997654
No 58
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=97.54 E-value=0.0001 Score=51.50 Aligned_cols=63 Identities=11% Similarity=0.099 Sum_probs=51.1
Q ss_pred cchhhhhhhhHHHHhhhCCCChHHHhhhh----CCCCccccc------------CCCCCCC-CCCHHHHHHHHHHHHhhC
Q 047160 25 PSLVTMSKRQESKINAQSTMNWFQVKKLK----FDHEAQGRQ------------KSSLKKG-ALSPEEDQKLINYVTSRC 87 (129)
Q Consensus 25 ps~~~~s~~~~~~v~~~g~~~W~~Ia~~~----~~~r~~~~~------------k~~i~kg-~WT~eED~~L~~~v~~~G 87 (129)
|....-...+...|..+|..+|..|+..+ ++++..+|. .|.+++| +|++|||..|++++..+|
T Consensus 19 ~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~~~~p~~krg~~~p~e~~~rv~~~h~~~g 98 (121)
T 2juh_A 19 PFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRVLAAHAYWS 98 (121)
T ss_dssp CCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHHHTCSTTCCCSCCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhhccCCcccCCCCCCHHHHHHHHHHHHHHc
Confidence 55555666677889999999999999996 455555544 2899999 999999999999999988
No 59
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=97.37 E-value=0.00012 Score=45.47 Aligned_cols=22 Identities=23% Similarity=0.382 Sum_probs=20.4
Q ss_pred CCCCCCHHHHHHHHHHHHhcCC
Q 047160 108 NRDSFTQEEDEIIIKLHQQLRD 129 (129)
Q Consensus 108 k~~~Wt~eEd~~Ll~~v~~~G~ 129 (129)
.+.+||+|||+.|++.|++||+
T Consensus 7 ~r~~WT~EE~~~L~~gV~k~G~ 28 (62)
T 1x58_A 7 GRKDFTKEEVNYLFHGVKTMGN 28 (62)
T ss_dssp CSSSCCHHHHHHHHHHHHHHCS
T ss_pred CCCCCCHHHHHHHHHHHHHHhH
Confidence 5679999999999999999995
No 60
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=97.33 E-value=0.00023 Score=46.27 Aligned_cols=38 Identities=21% Similarity=0.409 Sum_probs=32.4
Q ss_pred CCCCCCHHHHHHHHHHHHh------------------------hCcccCchhHHHHHHHhcC
Q 047160 67 KKGALSPEEDQKLINYVTS------------------------RCLLRCGKSCRLCWRNYQR 104 (129)
Q Consensus 67 ~kg~WT~eED~~L~~~v~~------------------------~G~gRt~~qcr~Rw~~~L~ 104 (129)
....||.+|-.+|++++.. .|-.||+.||+++|.+...
T Consensus 3 R~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k 64 (86)
T 2ebi_A 3 RAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLK 64 (86)
T ss_dssp CSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 3568999999999999876 4468999999999998763
No 61
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=97.28 E-value=0.00018 Score=48.12 Aligned_cols=33 Identities=15% Similarity=0.277 Sum_probs=29.4
Q ss_pred hhHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHhcCC
Q 047160 93 KSCRLCWRNYQRPDINRDSFTQEEDEIIIKLHQQLRD 129 (129)
Q Consensus 93 ~qcr~Rw~~~L~p~ik~~~Wt~eEd~~Ll~~v~~~G~ 129 (129)
.=+.++|.++|.+ ++||.||+..|++|+++||.
T Consensus 18 ~yt~eeY~~~L~~----~~WTkEETd~Lf~L~~~fdl 50 (93)
T 3hm5_A 18 VYSEQEYQLYLHD----DAWTKAETDHLFDLSRRFDL 50 (93)
T ss_dssp CCCHHHHHHHTCB----TTBCHHHHHHHHHHHHHTTT
T ss_pred ccCHHHHHHHcCC----CCCCHHHHHHHHHHHHHhCC
Confidence 4567899999987 89999999999999999984
No 62
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=97.19 E-value=0.00031 Score=45.41 Aligned_cols=24 Identities=13% Similarity=0.299 Sum_probs=21.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCC
Q 047160 106 DINRDSFTQEEDEIIIKLHQQLRD 129 (129)
Q Consensus 106 ~ik~~~Wt~eEd~~Ll~~v~~~G~ 129 (129)
...+++||+|||.+|+++|.+||+
T Consensus 15 ~~~~~~WT~eEd~~Ll~~v~~~G~ 38 (79)
T 2yus_A 15 ASAGREWTEQETLLLLEALEMYKD 38 (79)
T ss_dssp SCCSCCCCHHHHHHHHHHHHHSSS
T ss_pred cccCCCcCHHHHHHHHHHHHHhCC
Confidence 456789999999999999999984
No 63
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.13 E-value=0.00047 Score=45.93 Aligned_cols=34 Identities=9% Similarity=0.112 Sum_probs=30.4
Q ss_pred CCCHHHHHHHHHHHHhhCc-------------ccCchhHHHHHHHhc
Q 047160 70 ALSPEEDQKLINYVTSRCL-------------LRCGKSCRLCWRNYQ 103 (129)
Q Consensus 70 ~WT~eED~~L~~~v~~~G~-------------gRt~~qcr~Rw~~~L 103 (129)
-||.|||..|+...++.|+ +|+.+|+++||...+
T Consensus 35 lWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm 81 (95)
T 1ug2_A 35 LWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELM 81 (95)
T ss_dssp SSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHH
T ss_pred EeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 4999999999999999883 799999999998654
No 64
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=96.14 E-value=8.4e-05 Score=47.02 Aligned_cols=35 Identities=9% Similarity=0.117 Sum_probs=31.2
Q ss_pred CCCHHHHHHHHHHHHhhC------------cccCchhHHHHHHHhcC
Q 047160 70 ALSPEEDQKLINYVTSRC------------LLRCGKSCRLCWRNYQR 104 (129)
Q Consensus 70 ~WT~eED~~L~~~v~~~G------------~gRt~~qcr~Rw~~~L~ 104 (129)
.||.|||..|+..+++.| .+|+++|+.+||...+.
T Consensus 16 lWTReeDR~IL~~cq~~G~s~~tfa~iA~~Lnks~~QV~~RF~~Lm~ 62 (70)
T 2lr8_A 16 LWTRNDDRVILLECQKRGPSSKTFAYLAAKLDKNPNQVSERFQQLMK 62 (70)
Confidence 599999999999999977 49999999999987653
No 65
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=96.98 E-value=0.00066 Score=43.33 Aligned_cols=24 Identities=17% Similarity=0.239 Sum_probs=22.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcC
Q 047160 105 PDINRDSFTQEEDEIIIKLHQQLR 128 (129)
Q Consensus 105 p~ik~~~Wt~eEd~~Ll~~v~~~G 128 (129)
+.+.+++||.+||.+|++++..||
T Consensus 14 ~~~~~~~WT~eEd~~L~~al~~~g 37 (73)
T 2cqr_A 14 ARSAEEPWTQNQQKLLELALQQYP 37 (73)
T ss_dssp TTCSSCCCCHHHHHHHHHHHHHSC
T ss_pred cccCCCCCCHHHHHHHHHHHHHcC
Confidence 567788999999999999999998
No 66
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=96.15 E-value=0.0014 Score=41.99 Aligned_cols=33 Identities=6% Similarity=-0.082 Sum_probs=27.6
Q ss_pred CCCCCHHHHHHHHHHHHhhC--------------cccCchhHHHHHH
Q 047160 68 KGALSPEEDQKLINYVTSRC--------------LLRCGKSCRLCWR 100 (129)
Q Consensus 68 kg~WT~eED~~L~~~v~~~G--------------~gRt~~qcr~Rw~ 100 (129)
.++||.|||.+|..++..+. ||||..+|+.+|.
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence 45899999999999998855 6899999999884
No 67
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=95.82 E-value=0.012 Score=39.14 Aligned_cols=38 Identities=11% Similarity=0.031 Sum_probs=32.4
Q ss_pred CCCCCCHHHHHHHHHHHHhhC---------------cccCchhHHHHHHHhcC
Q 047160 67 KKGALSPEEDQKLINYVTSRC---------------LLRCGKSCRLCWRNYQR 104 (129)
Q Consensus 67 ~kg~WT~eED~~L~~~v~~~G---------------~gRt~~qcr~Rw~~~L~ 104 (129)
....||.||...|++++..+. ..||-.+.++||..+.+
T Consensus 29 ~~~~WT~eETd~LfdLc~~fdlRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~ 81 (93)
T 4iej_A 29 HDDAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICA 81 (93)
T ss_dssp CBTTBCHHHHHHHHHHHHHTTTCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCeEEEeeccccCCCCCCCHHHHHHHHHHHHH
Confidence 346899999999999999955 37999999999987653
No 68
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=95.48 E-value=0.012 Score=35.87 Aligned_cols=19 Identities=26% Similarity=0.391 Sum_probs=17.6
Q ss_pred CCCCCHHHHHHHHHHHHhc
Q 047160 109 RDSFTQEEDEIIIKLHQQL 127 (129)
Q Consensus 109 ~~~Wt~eEd~~Ll~~v~~~ 127 (129)
+.+||+|||..|++.|.++
T Consensus 2 R~~FT~edD~~L~~~v~~~ 20 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKEN 20 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHh
Confidence 4589999999999999998
No 69
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.31 E-value=0.015 Score=35.31 Aligned_cols=22 Identities=23% Similarity=0.172 Sum_probs=19.8
Q ss_pred CCCCCCHHHHHHHHHHHHhcCC
Q 047160 108 NRDSFTQEEDEIIIKLHQQLRD 129 (129)
Q Consensus 108 k~~~Wt~eEd~~Ll~~v~~~G~ 129 (129)
..++||++|+.++++++.+||.
T Consensus 11 ~~~~WT~eE~~~F~~~~~~~gk 32 (61)
T 2eqr_A 11 FMNVWTDHEKEIFKDKFIQHPK 32 (61)
T ss_dssp CCCSCCHHHHHHHHHHHHHSTT
T ss_pred cCCCCCHHHHHHHHHHHHHhCC
Confidence 4569999999999999999984
No 70
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.24 E-value=0.04 Score=33.72 Aligned_cols=39 Identities=8% Similarity=-0.061 Sum_probs=33.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhhC-----------cccCchhHHHHHHH
Q 047160 63 KSSLKKGALSPEEDQKLINYVTSRC-----------LLRCGKSCRLCWRN 101 (129)
Q Consensus 63 k~~i~kg~WT~eED~~L~~~v~~~G-----------~gRt~~qcr~Rw~~ 101 (129)
.|.+....||+||-.+-.+++..+| +.|+..||..-|..
T Consensus 4 ~p~~~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~ 53 (63)
T 2yqk_A 4 GSSGIEKCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITFYYY 53 (63)
T ss_dssp CCCCCCCSCCHHHHHHHHHHHHHTCSCHHHHHHHSCTTSCHHHHHHHHHH
T ss_pred CCCcCCCCcCHHHHHHHHHHHHHhCccHHHHHHHHcCCCcHHHHHHHHhc
Confidence 4777889999999999999888877 68999999988764
No 71
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=95.01 E-value=0.024 Score=35.79 Aligned_cols=23 Identities=9% Similarity=0.133 Sum_probs=20.6
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcC
Q 047160 106 DINRDSFTQEEDEIIIKLHQQLR 128 (129)
Q Consensus 106 ~ik~~~Wt~eEd~~Ll~~v~~~G 128 (129)
..+.+.||.|||.+|.+++..|+
T Consensus 5 ~~~~~~WT~eE~k~fe~al~~~p 27 (72)
T 2cqq_A 5 SSGAPEWTEEDLSQLTRSMVKFP 27 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHSC
T ss_pred CCCCCCCCHHHHHHHHHHHHHCC
Confidence 45678999999999999999997
No 72
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=94.05 E-value=0.15 Score=40.42 Aligned_cols=22 Identities=18% Similarity=0.371 Sum_probs=19.4
Q ss_pred CCCCCCCHHHHHHHHHHHHhcC
Q 047160 107 INRDSFTQEEDEIIIKLHQQLR 128 (129)
Q Consensus 107 ik~~~Wt~eEd~~Ll~~v~~~G 128 (129)
.+...||++||..||-.+.+||
T Consensus 210 ~k~k~yteeEDRfLL~~l~k~G 231 (304)
T 1ofc_X 210 NKGKNYTEIEDRFLVCMLHKLG 231 (304)
T ss_dssp CCCSSCCHHHHHHHHHHHHHHC
T ss_pred CCCCccCHHHHHHHHHHHHHhc
Confidence 3556999999999999999998
No 73
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=93.89 E-value=0.06 Score=45.26 Aligned_cols=37 Identities=11% Similarity=0.033 Sum_probs=33.1
Q ss_pred CCCCCCCHHHHHHHHHHHHhhC----------cccCchhHHHHHHHh
Q 047160 66 LKKGALSPEEDQKLINYVTSRC----------LLRCGKSCRLCWRNY 102 (129)
Q Consensus 66 i~kg~WT~eED~~L~~~v~~~G----------~gRt~~qcr~Rw~~~ 102 (129)
....+||.||-.++++++.+|| ..||..||+..|.++
T Consensus 378 ~~~~~WT~eE~~~f~~al~~yGkdw~~IA~~VgTKT~~Qvk~fy~~~ 424 (482)
T 2xag_B 378 KCNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNY 424 (482)
T ss_dssp CCCSCCCHHHHHHHHHHHHHHTTCHHHHHHHHSSCCHHHHHHHHHHT
T ss_pred ccCCCCCHHHHHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHHHH
Confidence 3467999999999999999999 699999999999865
No 74
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=93.43 E-value=0.1 Score=33.79 Aligned_cols=54 Identities=9% Similarity=0.107 Sum_probs=38.1
Q ss_pred hhhhHHHHhhhCCCChHHHhhh----hCCCCccccc------------CCCCCCC-CCCHHHHHHHHHHHH
Q 047160 31 SKRQESKINAQSTMNWFQVKKL----KFDHEAQGRQ------------KSSLKKG-ALSPEEDQKLINYVT 84 (129)
Q Consensus 31 s~~~~~~v~~~g~~~W~~Ia~~----~~~~r~~~~~------------k~~i~kg-~WT~eED~~L~~~v~ 84 (129)
.......|..+|..+|..|++. +++++..+|. .|.+++| +..++.+..++.+..
T Consensus 8 d~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~~~~p~~~~~~~~p~~~~~rv~~~~a 78 (83)
T 2ckx_A 8 VEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRVLAAHA 78 (83)
T ss_dssp HHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhccCCcccccCCCCCHHHHHHHHHHHH
Confidence 3445567889999999999996 5566555544 2554554 577788788887764
No 75
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=92.66 E-value=0.15 Score=33.59 Aligned_cols=36 Identities=11% Similarity=0.048 Sum_probs=31.0
Q ss_pred CCCCCCHHHHHHHHHHHHhhC----------cccCchhHHHHHHHh
Q 047160 67 KKGALSPEEDQKLINYVTSRC----------LLRCGKSCRLCWRNY 102 (129)
Q Consensus 67 ~kg~WT~eED~~L~~~v~~~G----------~gRt~~qcr~Rw~~~ 102 (129)
....||+||-.+..+++..+| ++||..||-+-|...
T Consensus 42 ~~~~WT~eE~~~F~~~~~~~gK~F~~Ia~~l~~Kt~~~cV~~YY~~ 87 (94)
T 4a69_C 42 VMNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYLT 87 (94)
T ss_dssp HTCCCCHHHHHHHHHHHHHSTTCHHHHHHTCTTCCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHHhcc
Confidence 356899999999999998877 899999999988643
No 76
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=91.47 E-value=0.23 Score=30.16 Aligned_cols=25 Identities=16% Similarity=0.106 Sum_probs=22.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhcC
Q 047160 104 RPDINRDSFTQEEDEIIIKLHQQLR 128 (129)
Q Consensus 104 ~p~ik~~~Wt~eEd~~Ll~~v~~~G 128 (129)
.|.+....||+||-.+..+.+.+||
T Consensus 4 ~p~~~~~~WT~eE~~~Fe~~l~~yG 28 (63)
T 2yqk_A 4 GSSGIEKCWTEDEVKRFVKGLRQYG 28 (63)
T ss_dssp CCCCCCCSCCHHHHHHHHHHHHHTC
T ss_pred CCCcCCCCcCHHHHHHHHHHHHHhC
Confidence 4778889999999999999999998
No 77
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=89.82 E-value=0.54 Score=29.14 Aligned_cols=35 Identities=9% Similarity=-0.144 Sum_probs=30.2
Q ss_pred CCCCCCHHHHHHHHHHHHhhC-----------cccCchhHHHHHHH
Q 047160 67 KKGALSPEEDQKLINYVTSRC-----------LLRCGKSCRLCWRN 101 (129)
Q Consensus 67 ~kg~WT~eED~~L~~~v~~~G-----------~gRt~~qcr~Rw~~ 101 (129)
....||+||-.+-.+++..+| ++||..||..-|..
T Consensus 7 ~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~ 52 (70)
T 2crg_A 7 GMEEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYYM 52 (70)
T ss_dssp SSCCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCccHHHHHHHHcCCCCHHHHHHHHHh
Confidence 456899999999999998877 68999999988874
No 78
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=88.56 E-value=0.45 Score=31.51 Aligned_cols=27 Identities=19% Similarity=0.450 Sum_probs=21.5
Q ss_pred HHHHhcCCCCCCCCCCHHHHHHHHHHHHhcC
Q 047160 98 CWRNYQRPDINRDSFTQEEDEIIIKLHQQLR 128 (129)
Q Consensus 98 Rw~~~L~p~ik~~~Wt~eEd~~Ll~~v~~~G 128 (129)
-|..+|. ...||.||-..|++|+++|+
T Consensus 23 EY~~~L~----~~~WT~eETd~LfdLc~~fd 49 (93)
T 4iej_A 23 EYQLYLH----DDAWTKAETDHLFDLSRRFD 49 (93)
T ss_dssp HHHHHTC----BTTBCHHHHHHHHHHHHHTT
T ss_pred HHHHHhC----CCCCCHHHHHHHHHHHHHcC
Confidence 3555554 25899999999999999985
No 79
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=88.10 E-value=0.92 Score=35.91 Aligned_cols=22 Identities=18% Similarity=0.154 Sum_probs=19.3
Q ss_pred CCCCCCHHHHHHHHHHHHhhCc
Q 047160 67 KKGALSPEEDQKLINYVTSRCL 88 (129)
Q Consensus 67 ~kg~WT~eED~~L~~~v~~~G~ 88 (129)
+...||.+||..|+-.+..+|-
T Consensus 211 k~k~yteeEDRfLL~~l~k~G~ 232 (304)
T 1ofc_X 211 KGKNYTEIEDRFLVCMLHKLGF 232 (304)
T ss_dssp CCSSCCHHHHHHHHHHHHHHCT
T ss_pred CCCccCHHHHHHHHHHHHHhcC
Confidence 4557999999999999999883
No 80
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=87.80 E-value=0.34 Score=37.07 Aligned_cols=21 Identities=14% Similarity=0.257 Sum_probs=19.3
Q ss_pred CCCCCHHHHHHHHHHHHhcCC
Q 047160 109 RDSFTQEEDEIIIKLHQQLRD 129 (129)
Q Consensus 109 ~~~Wt~eEd~~Ll~~v~~~G~ 129 (129)
.++||+||+.++++++.+||+
T Consensus 133 s~~WTeEE~~lFleAl~kYGK 153 (235)
T 2iw5_B 133 NARWTTEEQLLAVQAIRKYGR 153 (235)
T ss_dssp CSSCCHHHHHHHHHHHHHHSS
T ss_pred CCCCCHHHHHHHHHHHHHHCc
Confidence 459999999999999999995
No 81
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=85.39 E-value=2.1 Score=26.32 Aligned_cols=23 Identities=13% Similarity=0.052 Sum_probs=20.2
Q ss_pred CCCCCCCHHHHHHHHHHHHhhCc
Q 047160 66 LKKGALSPEEDQKLINYVTSRCL 88 (129)
Q Consensus 66 i~kg~WT~eED~~L~~~v~~~G~ 88 (129)
..+-.||+|.-+.-+++|+++|.
T Consensus 5 k~r~~WT~elH~~Fv~Av~~LG~ 27 (64)
T 1irz_A 5 KPRVLWTHELHNKFLAAVDHLGV 27 (64)
T ss_dssp CSSCSSCHHHHHHHHHHHHHHCT
T ss_pred CCCCcCCHHHHHHHHHHHHHhCC
Confidence 35668999999999999999993
No 82
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=84.78 E-value=1.1 Score=28.25 Aligned_cols=21 Identities=10% Similarity=0.107 Sum_probs=18.0
Q ss_pred CCCCCCHHHHHHHHHHHHhcC
Q 047160 108 NRDSFTQEEDEIIIKLHQQLR 128 (129)
Q Consensus 108 k~~~Wt~eEd~~Ll~~v~~~G 128 (129)
....||.+|+.+|..+...|+
T Consensus 7 ~~~~WT~eE~k~fe~ALa~~~ 27 (73)
T 1wgx_A 7 GDKEWNEKELQKLHCAFASLP 27 (73)
T ss_dssp SSSCCCHHHHHHHHHHHHHSC
T ss_pred CCCCCCHHHHHHHHHHHHHCC
Confidence 345899999999999988875
No 83
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=84.49 E-value=0.67 Score=30.65 Aligned_cols=19 Identities=26% Similarity=0.478 Sum_probs=17.6
Q ss_pred CCCHHHHHHHHHHHHhcCC
Q 047160 111 SFTQEEDEIIIKLHQQLRD 129 (129)
Q Consensus 111 ~Wt~eEd~~Ll~~v~~~G~ 129 (129)
-||.|||..||...++.|+
T Consensus 35 lWTRe~DR~IL~~cQ~~G~ 53 (95)
T 1ug2_A 35 LWTREADRVILTMCQEQGA 53 (95)
T ss_dssp SSCHHHHHHHHHHHHHTTS
T ss_pred EeccccCHHHHHHHHhcCC
Confidence 7999999999999999874
No 84
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=84.80 E-value=0.19 Score=31.56 Aligned_cols=19 Identities=21% Similarity=0.321 Sum_probs=17.5
Q ss_pred CCCHHHHHHHHHHHHhcCC
Q 047160 111 SFTQEEDEIIIKLHQQLRD 129 (129)
Q Consensus 111 ~Wt~eEd~~Ll~~v~~~G~ 129 (129)
-||.|||..||..+++.|+
T Consensus 16 lWTReeDR~IL~~cq~~G~ 34 (70)
T 2lr8_A 16 LWTRNDDRVILLECQKRGP 34 (70)
Confidence 7999999999999998884
No 85
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=84.34 E-value=1.2 Score=32.41 Aligned_cols=23 Identities=13% Similarity=-0.000 Sum_probs=20.5
Q ss_pred CCCCCHHHHHHHHHHHHhhCccc
Q 047160 68 KGALSPEEDQKLINYVTSRCLLR 90 (129)
Q Consensus 68 kg~WT~eED~~L~~~v~~~G~gR 90 (129)
.-.||.+||..|+..|.+||-|+
T Consensus 134 ~~~W~~~~D~~LL~Gi~k~G~g~ 156 (211)
T 4b4c_A 134 DIDWGKEDDSNLLIGIYEYGYGS 156 (211)
T ss_dssp SSCCCHHHHHHHHHHHHHHCTTC
T ss_pred CCCccHHHHHHHHHHHHHHCcCc
Confidence 44699999999999999999776
No 86
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=83.73 E-value=0.94 Score=30.44 Aligned_cols=64 Identities=16% Similarity=0.115 Sum_probs=45.5
Q ss_pred ccchhhhhhhhHHHHhhhCCCChHHHhhhh----CCCCccccc------------CCCCCCCCCCHHHHHH-HHHHHHhh
Q 047160 24 LPSLVTMSKRQESKINAQSTMNWFQVKKLK----FDHEAQGRQ------------KSSLKKGALSPEEDQK-LINYVTSR 86 (129)
Q Consensus 24 ~ps~~~~s~~~~~~v~~~g~~~W~~Ia~~~----~~~r~~~~~------------k~~i~kg~WT~eED~~-L~~~v~~~ 86 (129)
.|....-...+...|..+|..+|..|+..+ ++++..+|. .|.+++|.=+|.|=-. ++++....
T Consensus 14 ~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~~~~p~~~rg~~~P~~~l~rv~~~~~~~ 93 (105)
T 2aje_A 14 RPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAKISPQQRRGEPVPQELLNRVLNAHGYW 93 (105)
T ss_dssp CSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTTTCCTTTTTCCSCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCcccccCCCCCHHHHHHHHHHHHHH
Confidence 355555666677889999999999999975 344444443 3889999888877655 66666554
Q ss_pred C
Q 047160 87 C 87 (129)
Q Consensus 87 G 87 (129)
|
T Consensus 94 ~ 94 (105)
T 2aje_A 94 T 94 (105)
T ss_dssp H
T ss_pred H
Confidence 4
No 87
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=79.22 E-value=0.86 Score=29.91 Aligned_cols=32 Identities=13% Similarity=0.163 Sum_probs=23.2
Q ss_pred hhhhHHHHhhhC---CCChHHHhhhhCCCCccccc
Q 047160 31 SKRQESKINAQS---TMNWFQVKKLKFDHEAQGRQ 62 (129)
Q Consensus 31 s~~~~~~v~~~g---~~~W~~Ia~~~~~~r~~~~~ 62 (129)
.+.+...+..++ ...|..||.++++++..+|.
T Consensus 16 d~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k 50 (93)
T 2cjj_A 16 NKAFERALAVYDKDTPDRWANVARAVEGRTPEEVK 50 (93)
T ss_dssp HHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHH
T ss_pred HHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHH
Confidence 334445566676 46799999999987777765
No 88
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=76.57 E-value=2.2 Score=31.08 Aligned_cols=18 Identities=11% Similarity=0.165 Sum_probs=17.3
Q ss_pred CCCHHHHHHHHHHHHhcC
Q 047160 111 SFTQEEDEIIIKLHQQLR 128 (129)
Q Consensus 111 ~Wt~eEd~~Ll~~v~~~G 128 (129)
.||.+||..||..+.+||
T Consensus 136 ~W~~~~D~~LL~Gi~k~G 153 (211)
T 4b4c_A 136 DWGKEDDSNLLIGIYEYG 153 (211)
T ss_dssp CCCHHHHHHHHHHHHHHC
T ss_pred CccHHHHHHHHHHHHHHC
Confidence 699999999999999998
No 89
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=72.25 E-value=3.2 Score=25.49 Aligned_cols=20 Identities=5% Similarity=0.136 Sum_probs=18.3
Q ss_pred CCCCCHHHHHHHHHHHHhcC
Q 047160 109 RDSFTQEEDEIIIKLHQQLR 128 (129)
Q Consensus 109 ~~~Wt~eEd~~Ll~~v~~~G 128 (129)
...||++|-.+..+.+..||
T Consensus 8 ~~~WT~eE~~~Fe~~l~~yG 27 (70)
T 2crg_A 8 MEEWSASEACLFEEALEKYG 27 (70)
T ss_dssp SCCCCHHHHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhC
Confidence 45899999999999999998
No 90
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=69.59 E-value=2.3 Score=30.83 Aligned_cols=27 Identities=19% Similarity=0.209 Sum_probs=20.9
Q ss_pred CCCCCCCCCHHHHHHHH--------HHHHhhCccc
Q 047160 64 SSLKKGALSPEEDQKLI--------NYVTSRCLLR 90 (129)
Q Consensus 64 ~~i~kg~WT~eED~~L~--------~~v~~~G~gR 90 (129)
|.-..|-||+|+|+.|. .+++++|.+|
T Consensus 110 P~N~pGIWT~eDDe~L~s~d~~dikrL~kKHG~er 144 (168)
T 3cz6_A 110 PPNVPGIWTHDDDESLKSNDQEQIRKLVKKHGTGR 144 (168)
T ss_dssp CTTCTTCCCHHHHHHHHSCCHHHHHHHHHHHCHHH
T ss_pred CCCCCCCCChhhHHHHHcCCHHHHHHHHHHhCHHH
Confidence 77789999999999875 3666677544
No 91
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=68.02 E-value=3.5 Score=32.02 Aligned_cols=20 Identities=30% Similarity=0.165 Sum_probs=18.4
Q ss_pred CCCHHHHHHHHHHHHhhCcc
Q 047160 70 ALSPEEDQKLINYVTSRCLL 89 (129)
Q Consensus 70 ~WT~eED~~L~~~v~~~G~g 89 (129)
.|+.+||..|+..|.+||-|
T Consensus 170 ~W~~~dD~~LLvGIykyGyG 189 (270)
T 2xb0_X 170 NWTKEEDEKLLIGVFKYGYG 189 (270)
T ss_dssp CCCHHHHHHHHHHHHHHCTT
T ss_pred CcChHHHHHHHHHHHHHcCC
Confidence 59999999999999999955
No 92
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=63.37 E-value=5.8 Score=25.77 Aligned_cols=20 Identities=15% Similarity=0.189 Sum_probs=18.0
Q ss_pred CCCCCHHHHHHHHHHHHhcC
Q 047160 109 RDSFTQEEDEIIIKLHQQLR 128 (129)
Q Consensus 109 ~~~Wt~eEd~~Ll~~v~~~G 128 (129)
...||+||..+..+....||
T Consensus 43 ~~~WT~eE~~~F~~~~~~~g 62 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHP 62 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHST
T ss_pred CCCCCHHHHHHHHHHHHHcC
Confidence 45899999999999999987
No 93
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=63.12 E-value=8.9 Score=23.40 Aligned_cols=22 Identities=18% Similarity=0.143 Sum_probs=19.4
Q ss_pred CCCCCCCHHHHHHHHHHHHhcC
Q 047160 107 INRDSFTQEEDEIIIKLHQQLR 128 (129)
Q Consensus 107 ik~~~Wt~eEd~~Ll~~v~~~G 128 (129)
..+-.||+|.-...+++|.++|
T Consensus 5 k~r~~WT~elH~~Fv~Av~~LG 26 (64)
T 1irz_A 5 KPRVLWTHELHNKFLAAVDHLG 26 (64)
T ss_dssp CSSCSSCHHHHHHHHHHHHHHC
T ss_pred CCCCcCCHHHHHHHHHHHHHhC
Confidence 3455899999999999999998
No 94
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=56.98 E-value=7.3 Score=31.64 Aligned_cols=21 Identities=24% Similarity=0.521 Sum_probs=18.8
Q ss_pred CCCCCCHHHHHHHHHHHHhcC
Q 047160 108 NRDSFTQEEDEIIIKLHQQLR 128 (129)
Q Consensus 108 k~~~Wt~eEd~~Ll~~v~~~G 128 (129)
+...||++||..||-++.+||
T Consensus 227 k~k~yteeEDRfLL~~l~k~G 247 (374)
T 2y9y_A 227 NKRTYSEEEDRFILLMLFKYG 247 (374)
T ss_dssp SCCCSCHHHHHHHHHHHHHHT
T ss_pred CCCccCHHHHHHHHHHHHHhc
Confidence 455899999999999999998
No 95
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=53.53 E-value=8.2 Score=29.88 Aligned_cols=18 Identities=28% Similarity=0.314 Sum_probs=17.2
Q ss_pred CCCHHHHHHHHHHHHhcC
Q 047160 111 SFTQEEDEIIIKLHQQLR 128 (129)
Q Consensus 111 ~Wt~eEd~~Ll~~v~~~G 128 (129)
.|+.+||..||.-|.+||
T Consensus 170 ~W~~~dD~~LLvGIykyG 187 (270)
T 2xb0_X 170 NWTKEEDEKLLIGVFKYG 187 (270)
T ss_dssp CCCHHHHHHHHHHHHHHC
T ss_pred CcChHHHHHHHHHHHHHc
Confidence 699999999999999998
No 96
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=49.38 E-value=53 Score=23.67 Aligned_cols=28 Identities=14% Similarity=0.196 Sum_probs=22.4
Q ss_pred hHHHHHHHhcC-CCCCCCCCCHHHHHHHH
Q 047160 94 SCRLCWRNYQR-PDINRDSFTQEEDEIII 121 (129)
Q Consensus 94 qcr~Rw~~~L~-p~ik~~~Wt~eEd~~Ll 121 (129)
++.+.|..-.. |....|-||.++|+.|.
T Consensus 98 ~VL~~l~~GkgiP~N~pGIWT~eDDe~L~ 126 (168)
T 3cz6_A 98 YFLNMFKDNVNPPPNVPGIWTHDDDESLK 126 (168)
T ss_dssp HHHHHHHHTCSSCTTCTTCCCHHHHHHHH
T ss_pred HHHHHHHhCCCCCCCCCCCCChhhHHHHH
Confidence 67777777666 66889999999998764
No 97
>2cs7_A Pneumococcal histidine triad A protein; PHTA, pneumococcal histidine triad protein, structural genomics, unknown function; 1.20A {Streptococcus pneumoniae} SCOP: d.9.2.1
Probab=49.24 E-value=5 Score=23.90 Aligned_cols=13 Identities=38% Similarity=0.483 Sum_probs=10.3
Q ss_pred CCCCCcceeeecC
Q 047160 3 YGFNPARIIRVHP 15 (129)
Q Consensus 3 ~~~~~~~~~~~~p 15 (129)
|.|||+.|+.--.
T Consensus 10 yvF~p~dIvs~~~ 22 (55)
T 2cs7_A 10 YIFNASDIIEDTG 22 (55)
T ss_dssp CBCCGGGCCEECS
T ss_pred cEECHHHheecCC
Confidence 7899999987543
No 98
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=48.16 E-value=12 Score=31.32 Aligned_cols=20 Identities=15% Similarity=0.275 Sum_probs=18.8
Q ss_pred CCCCCHHHHHHHHHHHHhcC
Q 047160 109 RDSFTQEEDEIIIKLHQQLR 128 (129)
Q Consensus 109 ~~~Wt~eEd~~Ll~~v~~~G 128 (129)
...||++|-.++++++.+||
T Consensus 380 ~~~WT~eE~~~f~~al~~yG 399 (482)
T 2xag_B 380 NARWTTEEQLLAVQAIRKYG 399 (482)
T ss_dssp CSCCCHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHC
Confidence 46999999999999999998
No 99
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=47.75 E-value=20 Score=29.01 Aligned_cols=21 Identities=24% Similarity=0.219 Sum_probs=18.6
Q ss_pred CCCCCCHHHHHHHHHHHHhhC
Q 047160 67 KKGALSPEEDQKLINYVTSRC 87 (129)
Q Consensus 67 ~kg~WT~eED~~L~~~v~~~G 87 (129)
+...||.+||..|+-++..+|
T Consensus 227 k~k~yteeEDRfLL~~l~k~G 247 (374)
T 2y9y_A 227 NKRTYSEEEDRFILLMLFKYG 247 (374)
T ss_dssp SCCCSCHHHHHHHHHHHHHHT
T ss_pred CCCccCHHHHHHHHHHHHHhc
Confidence 345799999999999999988
No 100
>3h8k_B Autocrine motility factor receptor, isoform 2; alpha beta, all alpha, ligase, UBL conjugation pathway, endo reticulum, membrane, metal-binding; 1.80A {Homo sapiens} PDB: 3fsh_C
Probab=39.48 E-value=19 Score=18.45 Aligned_cols=11 Identities=27% Similarity=0.504 Sum_probs=9.1
Q ss_pred CCHHHHHHHHH
Q 047160 71 LSPEEDQKLIN 81 (129)
Q Consensus 71 WT~eED~~L~~ 81 (129)
||++|-+..++
T Consensus 1 ~s~~eRq~~Lq 11 (28)
T 3h8k_B 1 WSADERQRMLV 11 (28)
T ss_dssp CCHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 89999888764
No 101
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*
Probab=35.97 E-value=68 Score=22.11 Aligned_cols=28 Identities=25% Similarity=0.385 Sum_probs=22.1
Q ss_pred cccCchhHHHHHHHhcCCCCCCCCCCHHHHHHHHH
Q 047160 88 LLRCGKSCRLCWRNYQRPDINRDSFTQEEDEIIIK 122 (129)
Q Consensus 88 ~gRt~~qcr~Rw~~~L~p~ik~~~Wt~eEd~~Ll~ 122 (129)
.|+|..+||.-+ +|.. .+|+||++.|.+
T Consensus 126 kgkt~eeir~~f------~I~n-d~t~eEe~~ir~ 153 (160)
T 2p1m_A 126 KGKTPEEIRTTF------NIKN-DFTPEEEEEVRR 153 (160)
T ss_dssp TTCCHHHHHHHT------TCCC-CCCHHHHHHHHH
T ss_pred cCCCHHHHHHHc------CCCC-CCCHHHHHHHHH
Confidence 699999999987 3443 599999987754
No 102
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A*
Probab=28.19 E-value=80 Score=22.08 Aligned_cols=27 Identities=30% Similarity=0.315 Sum_probs=21.8
Q ss_pred cccCchhHHHHHHHhcCCCCCCCCCCHHHHHHHH
Q 047160 88 LLRCGKSCRLCWRNYQRPDINRDSFTQEEDEIII 121 (129)
Q Consensus 88 ~gRt~~qcr~Rw~~~L~p~ik~~~Wt~eEd~~Ll 121 (129)
.|+|+.++|.-|+ |.. .||+||++.+.
T Consensus 134 kgktpeeiR~~f~------I~n-d~t~eEe~~ir 160 (169)
T 3v7d_A 134 RGRSPEEIRRTFN------IVN-DFTPEEEAAIR 160 (169)
T ss_dssp TTCCHHHHHHHHT------CCC-CCCHHHHHHHH
T ss_pred cCCCHHHHHHHcC------CCC-CCCHHHHHHHH
Confidence 6999999999883 444 49999998764
No 103
>3d2y_A N-acetylmuramoyl-L-alanine amidase AMID; zinc amidase, PGRP, peptidoglycan recognizing protein, AMPD, acetylmuramyl-L-alanine amidase; HET: AH0; 1.75A {Escherichia coli} PDB: 2bh7_A 2wkx_A 2bgx_A* 3d2z_A
Probab=26.07 E-value=1.5e+02 Score=22.17 Aligned_cols=36 Identities=14% Similarity=0.190 Sum_probs=27.9
Q ss_pred hHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHhcCC
Q 047160 94 SCRLCWRNYQRPDINRDSFTQEEDEIIIKLHQQLRD 129 (129)
Q Consensus 94 qcr~Rw~~~L~p~ik~~~Wt~eEd~~Ll~~v~~~G~ 129 (129)
+.-..|....+|....|.-..+--.+|..|+.+|.+
T Consensus 225 ~aV~aFQ~~~r~l~~dGi~d~~T~~~L~~l~~ky~~ 260 (261)
T 3d2y_A 225 RVIMAFQMHFRPTLYNGEADAETQAIAEALLEKYGQ 260 (261)
T ss_dssp HHHHHHHHHHCTTCCSCCCBHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhccC
Confidence 455566666677777888889888999999988864
No 104
>2k0m_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Rhodospirillum rubrum atcc 11170}
Probab=21.89 E-value=53 Score=21.65 Aligned_cols=37 Identities=3% Similarity=-0.034 Sum_probs=28.7
Q ss_pred cCchhHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHh
Q 047160 90 RCGKSCRLCWRNYQRPDINRDSFTQEEDEIIIKLHQQ 126 (129)
Q Consensus 90 Rt~~qcr~Rw~~~L~p~ik~~~Wt~eEd~~Ll~~v~~ 126 (129)
.|..++...+++.|+.--....-+++|...|++|...
T Consensus 15 ~s~~~~~~~~k~iL~~y~~g~~l~~~d~~~l~~lL~~ 51 (104)
T 2k0m_A 15 ARKADALAFMKVMLNRYRPGDIVSTVDGAFLVEALKR 51 (104)
T ss_dssp SSHHHHHHHHHHHHHHSCTTEECCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHh
Confidence 4778899999999986555668889877777777653
No 105
>2hzd_A Transcriptional enhancer factor TEF-1; DNA-binding, helix-turn-helix, gene regulation; NMR {Homo sapiens}
Probab=21.85 E-value=1.4e+02 Score=18.86 Aligned_cols=14 Identities=14% Similarity=-0.102 Sum_probs=9.2
Q ss_pred hCcccCchhHHHHH
Q 047160 86 RCLLRCGKSCRLCW 99 (129)
Q Consensus 86 ~G~gRt~~qcr~Rw 99 (129)
.|..||.+||..+-
T Consensus 55 tGk~RtrKQVSShi 68 (82)
T 2hzd_A 55 TGKTRTRKQVSSHI 68 (82)
T ss_dssp HSCCCCSHHHHHHH
T ss_pred HcccCCccchhHHH
Confidence 45677777776653
No 106
>2ast_A S-phase kinase-associated protein 1A; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} PDB: 2ass_A* 2e31_B 2e32_B 3l2o_A 1p22_B* 2ovr_A* 2ovp_A 1fqv_B* 2ovq_A*
Probab=21.21 E-value=1e+02 Score=21.07 Aligned_cols=28 Identities=25% Similarity=0.348 Sum_probs=21.5
Q ss_pred cccCchhHHHHHHHhcCCCCCCCCCCHHHHHHHHH
Q 047160 88 LLRCGKSCRLCWRNYQRPDINRDSFTQEEDEIIIK 122 (129)
Q Consensus 88 ~gRt~~qcr~Rw~~~L~p~ik~~~Wt~eEd~~Ll~ 122 (129)
.|.|..+||.-|+ |.. .+|+||++.+.+
T Consensus 127 ~gkt~eeir~~f~------I~~-d~t~eEe~~ir~ 154 (159)
T 2ast_A 127 KGKTPEEIRKTFN------IKN-DFTEEEEAQVRK 154 (159)
T ss_dssp SSCCHHHHHHHTT------CCC-CSCTTHHHHHHH
T ss_pred cCCCHHHHHHHcC------CCC-CCCHHHHHHHHH
Confidence 6899999999983 433 589999877653
Done!