BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047161
(720 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3JRN|A Chain A, Crystal Structure Of Tir Domain From Arabidopsis Thaliana
Length = 176
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 59/138 (42%), Positives = 69/138 (50%), Gaps = 22/138 (15%)
Query: 1 GVKIFEDHKELERGKAVSPGLFKAIEESRFSVVVFSRNYAYSTWCLDELAKI-------- 52
++ F+D KELE G+ SP L IE SRF+VVV S NYA S+WCLDEL I
Sbjct: 36 SIRTFKDDKELENGQRFSPELKSPIEVSRFAVVVVSENYAASSWCLDELVTIMDFEKKGS 95
Query: 53 -----------PTVVRKQTRSFHEAFAKHEEAFRESTEKVQNWRHALTEVANPSGWHLKD 101
P VR QT E F KH A RE EKV WR ALT A SG
Sbjct: 96 ITVMPIFYGVEPNHVRWQTGVLAEQFKKH--ASREDPEKVLKWRQALTNFAQLSG-DCSG 152
Query: 102 RHEVEFIQEIVKEISRKK 119
+ + + +I EIS KK
Sbjct: 153 DDDSKLVDKIANEISNKK 170
>pdb|3OZI|A Chain A, Crystal Structure Of The Tir Domain From The Flax Disease
Resistance Protein L6
pdb|3OZI|B Chain B, Crystal Structure Of The Tir Domain From The Flax Disease
Resistance Protein L6
Length = 204
Score = 79.0 bits (193), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 43/118 (36%), Positives = 60/118 (50%), Gaps = 22/118 (18%)
Query: 2 VKIFEDHKELERGKAVSPGLFKAIEESRFSVVVFSRNYAYSTWCLDELAKI--------- 52
+ F D EL +GK + P L +AI++S+ V + S YA S WCL ELA+I
Sbjct: 64 IHTFRDDDELLKGKEIGPNLLRAIDQSKIYVPIISSGYADSKWCLMELAEIVRRQEEDPR 123
Query: 53 -----------PTVVRKQTRSFHEAFAKHEEAFRESTEKVQNWRHALTEVANPSGWHL 99
P+ VR QT + +AF KH F T +QNW+ AL +V + GWH+
Sbjct: 124 RIILPIFYMVDPSDVRHQTGCYKKAFRKHANKFDGQT--IQNWKDALKKVGDLKGWHI 179
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 64/250 (25%), Positives = 98/250 (39%), Gaps = 31/250 (12%)
Query: 325 KHSADEILDVLEISFNGLKGRIEIMRKSPEEPGKCSRLWK----VADVSHVLRRNTAFLK 380
K +AD + D + L+ R + + P++ + S L A + + F
Sbjct: 69 KATADLLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHXTIDAAGLXELPDTXQQFAG 128
Query: 381 MTNLRLLKIHNLQLPAGLESLSDELRLLQWHGYP-LKSLPSSM-EMDKTLE----CNMCY 434
+ L L + LPA + SL + LR L P L LP + D + E N+
Sbjct: 129 LETLTLARNPLRALPASIASL-NRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQS 187
Query: 435 RRIEQFWKGIKNLIRTPDFTGAPNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIEL 494
R+E W GI++L + LQN SL R +L I
Sbjct: 188 LRLE--WTGIRSLPAS----------------IANLQNLKSLKI--RNSPLSALGPAIHH 227
Query: 495 LTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMPESLGQMESLEELDVSGT 554
L L L+L C L P G L+ + L CS L +P + ++ LE+LD+ G
Sbjct: 228 LPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGC 287
Query: 555 VIRQPVPSIF 564
V +PS+
Sbjct: 288 VNLSRLPSLI 297
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 50/108 (46%), Gaps = 2/108 (1%)
Query: 470 LQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSR 529
++ C LT LP +A+ + L L L L I LP++I ++L+++ + R
Sbjct: 157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGI-RSLPASIANLQNLKSLKI-R 214
Query: 530 CSKLENMPESLGQMESLEELDVSGTVIRQPVPSIFFPSRILKVYLFVD 577
S L + ++ + LEELD+ G + P IF LK + D
Sbjct: 215 NSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKD 262
>pdb|3D0R|A Chain A, Crystal Structure Of Calg3 From Micromonospora Echinospora
Determined In Space Group P2(1)
pdb|3D0R|B Chain B, Crystal Structure Of Calg3 From Micromonospora Echinospora
Determined In Space Group P2(1)
pdb|3OTI|A Chain A, Crystal Structure Of Calg3, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin T0 Bound
Form
pdb|3OTI|B Chain B, Crystal Structure Of Calg3, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin T0 Bound
Form
Length = 398
Score = 33.5 bits (75), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 39/93 (41%), Gaps = 13/93 (13%)
Query: 20 GLFKAIEESRFSVVVFSRNYAYSTWCLDELAKIPTVVRKQ----TRSFHEAFA------- 68
G +++ R +VV+ + D A +P V R Q TR H + A
Sbjct: 121 GTMALVDDYRPDLVVYEQGATVGLLAADR-AGVPAVQRNQSAWRTRGMHRSIASFLTDLM 179
Query: 69 -KHEEAFRESTEKVQNWRHALTEVANPSGWHLK 100
KH+ + E ++++ +L A P GW ++
Sbjct: 180 DKHQVSLPEPVATIESFPPSLLLEAEPEGWFMR 212
>pdb|3GTD|A Chain A, 2.4 Angstrom Crystal Structure Of Fumarate Hydratase From
Rickettsia Prowazekii
pdb|3GTD|B Chain B, 2.4 Angstrom Crystal Structure Of Fumarate Hydratase From
Rickettsia Prowazekii
Length = 482
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 49/107 (45%), Gaps = 6/107 (5%)
Query: 66 AFAKHEEAFRESTEKVQNWRHALTEVANPSGWHLKDRHEV-EFIQEIVKEISRKKGPRTL 124
A + E+A ++ Q T + + G+ +K +V EF Q+ K K +L
Sbjct: 232 ALERIEDALKKVYLLAQGGTAVGTGINSKIGFDIKFAQKVAEFTQQPFKTAPNKF--ESL 289
Query: 125 GILDDLVEMNSRLKKLRLLLDAESRDVRMIGI---CGMGGVELSEKD 168
D LVE + L + + L + D+R++G CG+G + L E +
Sbjct: 290 AAHDALVEFSGTLNTIAVSLMKIANDIRLLGSGPRCGLGELHLPENE 336
>pdb|1FYV|A Chain A, Crystal Structure Of The Tir Domain Of Human Tlr1
Length = 161
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 24/49 (48%)
Query: 1 GVKIFEDHKELERGKAVSPGLFKAIEESRFSVVVFSRNYAYSTWCLDEL 49
G +I + GK++ + IE+S S+ V S N+ S WC EL
Sbjct: 39 GXQICLHERNFVPGKSIVENIITCIEKSYKSIFVLSPNFVQSEWCHYEL 87
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 47/99 (47%), Gaps = 16/99 (16%)
Query: 479 LPREIATESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLEN-MP 537
+P+EI + + L LNL I +P + + L ++LS +KL+ +P
Sbjct: 645 IPKEIGS---------MPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSS-NKLDGRIP 694
Query: 538 ESLGQMESLEELDVSGTVIRQPVPSI-----FFPSRILK 571
+++ + L E+D+S + P+P + F P++ L
Sbjct: 695 QAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLN 733
Score = 28.9 bits (63), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 36/70 (51%)
Query: 496 TGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMPESLGQMESLEELDVSGTV 555
T L +++L++ ++ +P I ++L + LS S N+P LG SL LD++ +
Sbjct: 487 TNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNL 546
Query: 556 IRQPVPSIFF 565
+P+ F
Sbjct: 547 FNGTIPAAMF 556
>pdb|2QMR|A Chain A, Karyopherin Beta2TRANSPORTIN
pdb|2QMR|B Chain B, Karyopherin Beta2TRANSPORTIN
pdb|2QMR|C Chain C, Karyopherin Beta2TRANSPORTIN
pdb|2QMR|D Chain D, Karyopherin Beta2TRANSPORTIN
pdb|2Z5J|A Chain A, Free Transportin 1
pdb|2Z5K|A Chain A, Complex Of Transportin 1 With Tap Nls
pdb|2Z5M|A Chain A, Complex Of Transportin 1 With Tap Nls, Crystal Form 2
pdb|2Z5N|A Chain A, Complex Of Transportin 1 With Hnrnp D Nls
pdb|2Z5O|A Chain A, Complex Of Transportin 1 With Jktbp Nls
Length = 890
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 29/57 (50%), Gaps = 5/57 (8%)
Query: 449 RTPDFTGAPNLEEL---ILDGCKRLQN--CTSLTTLPREIATESLQKLIELLTGLVF 500
+ PD P + EL ILD KR+Q C++ TL E TE + L +L LVF
Sbjct: 472 QPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVF 528
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 47/99 (47%), Gaps = 16/99 (16%)
Query: 479 LPREIATESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLEN-MP 537
+P+EI + + L LNL I +P + + L ++LS +KL+ +P
Sbjct: 648 IPKEIGS---------MPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSS-NKLDGRIP 697
Query: 538 ESLGQMESLEELDVSGTVIRQPVPSI-----FFPSRILK 571
+++ + L E+D+S + P+P + F P++ L
Sbjct: 698 QAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLN 736
>pdb|3D0Q|A Chain A, Crystal Structure Of Calg3 From Micromonospora Echinospora
Determined In Space Group I222
pdb|3D0Q|B Chain B, Crystal Structure Of Calg3 From Micromonospora Echinospora
Determined In Space Group I222
Length = 398
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 38/93 (40%), Gaps = 13/93 (13%)
Query: 20 GLFKAIEESRFSVVVFSRNYAYSTWCLDELAKIPTVVRKQ----TRSFHEAFA------- 68
G +++ R +VV+ + D A +P V R Q TR H + A
Sbjct: 121 GTXALVDDYRPDLVVYEQGATVGLLAADR-AGVPAVQRNQSAWRTRGXHRSIASFLTDLX 179
Query: 69 -KHEEAFRESTEKVQNWRHALTEVANPSGWHLK 100
KH+ + E ++++ +L A P GW +
Sbjct: 180 DKHQVSLPEPVATIESFPPSLLLEAEPEGWFXR 212
>pdb|2H4M|A Chain A, Karyopherin Beta2TRANSPORTIN-M9nls
pdb|2H4M|B Chain B, Karyopherin Beta2TRANSPORTIN-M9nls
Length = 865
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 29/57 (50%), Gaps = 5/57 (8%)
Query: 449 RTPDFTGAPNLEEL---ILDGCKRLQN--CTSLTTLPREIATESLQKLIELLTGLVF 500
+ PD P + EL ILD KR+Q C++ TL E TE + L +L LVF
Sbjct: 447 QPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVF 503
>pdb|2OT8|A Chain A, Karyopherin Beta2TRANSPORTIN-Hnrnpm Nls Complex
pdb|2OT8|B Chain B, Karyopherin Beta2TRANSPORTIN-Hnrnpm Nls Complex
pdb|4FDD|A Chain A, Crystal Structure Of Kap Beta2-Py-Nls
pdb|4H1K|A Chain A, Crystal Structure Of Human Kap-Beta2 Bound To The Nls Of
Saccharomyces Cerevisiae Nab2
Length = 852
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 29/57 (50%), Gaps = 5/57 (8%)
Query: 449 RTPDFTGAPNLEEL---ILDGCKRLQN--CTSLTTLPREIATESLQKLIELLTGLVF 500
+ PD P + EL ILD KR+Q C++ TL E TE + L +L LVF
Sbjct: 434 QPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVF 490
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 495 LTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLEN-MPESLGQMESLEELDVSG 553
L L++L+++ V NG SL + ++ S EN +P+ ++ +L LD+S
Sbjct: 444 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 503
Query: 554 TVIRQPVPSIF 564
+ Q P+ F
Sbjct: 504 CQLEQLSPTAF 514
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 495 LTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLEN-MPESLGQMESLEELDVSG 553
L L++L+++ V NG SL + ++ S EN +P+ ++ +L LD+S
Sbjct: 420 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 479
Query: 554 TVIRQPVPSIF 564
+ Q P+ F
Sbjct: 480 CQLEQLSPTAF 490
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 495 LTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLEN-MPESLGQMESLEELDVSG 553
L L++L+++ V NG SL + ++ S EN +P+ ++ +L LD+S
Sbjct: 420 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 479
Query: 554 TVIRQPVPSIF 564
+ Q P+ F
Sbjct: 480 CQLEQLSPTAF 490
>pdb|2J67|A Chain A, The Tir Domain Of Human Toll-Like Receptor 10 (Tlr10)
pdb|2J67|B Chain B, The Tir Domain Of Human Toll-Like Receptor 10 (Tlr10)
Length = 178
Score = 29.6 bits (65), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 21/39 (53%)
Query: 11 LERGKAVSPGLFKAIEESRFSVVVFSRNYAYSTWCLDEL 49
+ GK++S + IE+S S+ V S N+ + WC E
Sbjct: 74 FDPGKSISENIVSFIEKSYKSIFVLSPNFVQNEWCHYEF 112
>pdb|2KHN|A Chain A, Nmr Solution Structure Of The Eh 1 Domain From Human
Intersectin-1 Protein. Northeast Structural Genomics
Consortium Target Hr3646e
Length = 121
Score = 29.3 bits (64), Expect = 8.7, Method: Composition-based stats.
Identities = 25/92 (27%), Positives = 41/92 (44%), Gaps = 3/92 (3%)
Query: 309 FGRSVDGWRSTLERLNKHSAD-EILDVLEISFNGLKGRIEIMRKSPEEPGKCSRLWKVAD 367
FG S+D W T+E KH L + G + R + +P +++W +AD
Sbjct: 18 FGGSLDTWAITVEERAKHDQQFHSLKPISGFITGDQARNFFFQSGLPQP-VLAQIWALAD 76
Query: 368 VSHVLRRNTA-FLKMTNLRLLKIHNLQLPAGL 398
+++ R + F L LK+ QLP+ L
Sbjct: 77 MNNDGRMDQVEFSIAMKLIKLKLQGYQLPSAL 108
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 28.9 bits (63), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 495 LTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLEN-MPESLGQMESLEELDVSG 553
L L++L+++ V NG SL + ++ S EN +P+ ++ +L LD+S
Sbjct: 125 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 184
Query: 554 TVIRQPVPSIF 564
+ Q P+ F
Sbjct: 185 CQLEQLSPTAF 195
>pdb|4DLQ|A Chain A, Crystal Structure Of The Gain And Hormr Domains Of Cirl
1LATROPHILIN 1 (Cl1)
Length = 381
Score = 28.9 bits (63), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 30/56 (53%)
Query: 281 KDYVELIKRIVKYADGLPFALETLGSVLFGRSVDGWRSTLERLNKHSADEILDVLE 336
K+Y ++ KR D + +ET+ ++L +++ W+ H+A +LDVLE
Sbjct: 145 KNYNKMHKRERTCKDYIKAVVETVDNLLRPEALESWKDMNATEQVHTATMLLDVLE 200
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,966,310
Number of Sequences: 62578
Number of extensions: 805981
Number of successful extensions: 2133
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 2097
Number of HSP's gapped (non-prelim): 38
length of query: 720
length of database: 14,973,337
effective HSP length: 106
effective length of query: 614
effective length of database: 8,340,069
effective search space: 5120802366
effective search space used: 5120802366
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)