Query 047161
Match_columns 720
No_of_seqs 605 out of 4956
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 08:18:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047161.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047161hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 100.0 3E-91 6.6E-96 839.7 57.8 655 1-682 40-910 (1153)
2 KOG4658 Apoptotic ATPase [Sign 100.0 9.7E-54 2.1E-58 488.2 21.5 523 131-687 161-792 (889)
3 PF00931 NB-ARC: NB-ARC domain 100.0 3.6E-31 7.7E-36 274.2 11.8 239 133-371 1-284 (287)
4 PLN03194 putative disease resi 99.9 2.4E-27 5.3E-32 214.8 8.2 107 1-120 54-178 (187)
5 PLN00113 leucine-rich repeat r 99.9 1.2E-23 2.6E-28 254.2 11.1 348 332-699 142-533 (968)
6 PLN00113 leucine-rich repeat r 99.9 1.4E-23 3E-28 253.7 10.0 207 492-698 232-461 (968)
7 KOG4194 Membrane glycoprotein 99.9 1.4E-24 3E-29 224.0 0.6 339 333-710 81-466 (873)
8 KOG0444 Cytoskeletal regulator 99.8 4E-23 8.7E-28 214.4 -4.8 310 332-682 57-379 (1255)
9 KOG4194 Membrane glycoprotein 99.8 2.5E-21 5.5E-26 200.2 3.5 304 365-699 83-426 (873)
10 KOG0444 Cytoskeletal regulator 99.8 2.9E-21 6.3E-26 200.7 -3.1 239 385-655 10-256 (1255)
11 KOG0472 Leucine-rich repeat pr 99.7 1.2E-20 2.6E-25 187.1 -8.6 325 332-699 116-538 (565)
12 KOG0472 Leucine-rich repeat pr 99.7 2.4E-19 5.3E-24 178.0 -1.1 166 332-531 139-308 (565)
13 PLN03210 Resistant to P. syrin 99.7 9.4E-17 2E-21 194.8 19.4 269 403-704 558-907 (1153)
14 KOG0618 Serine/threonine phosp 99.7 1.7E-18 3.7E-23 188.8 -5.7 208 487-699 255-486 (1081)
15 PRK15387 E3 ubiquitin-protein 99.7 1.1E-15 2.4E-20 172.4 16.1 173 497-699 283-455 (788)
16 PRK15370 E3 ubiquitin-protein 99.6 9.1E-16 2E-20 174.2 10.4 225 383-661 179-404 (754)
17 KOG0617 Ras suppressor protein 99.6 2.3E-17 5E-22 145.6 -5.2 180 447-678 23-203 (264)
18 PRK15370 E3 ubiquitin-protein 99.6 1.5E-14 3.2E-19 164.4 13.6 243 403-699 178-425 (754)
19 PRK15387 E3 ubiquitin-protein 99.6 3.5E-14 7.5E-19 160.4 16.3 237 408-709 206-442 (788)
20 KOG0618 Serine/threonine phosp 99.5 3E-16 6.5E-21 171.5 -2.1 265 379-679 196-490 (1081)
21 KOG0617 Ras suppressor protein 99.5 4E-16 8.8E-21 137.8 -5.8 170 417-643 25-195 (264)
22 KOG4237 Extracellular matrix p 99.3 2.2E-13 4.8E-18 135.9 -1.9 276 407-712 50-375 (498)
23 KOG4237 Extracellular matrix p 99.2 1.8E-12 4E-17 129.5 -1.0 245 391-655 55-357 (498)
24 PF01582 TIR: TIR domain; Int 99.1 4.6E-12 1E-16 115.5 -0.8 89 1-89 28-140 (141)
25 KOG0532 Leucine-rich repeat (L 99.1 4.1E-12 9E-17 132.5 -4.7 171 453-675 94-270 (722)
26 KOG4658 Apoptotic ATPase [Sign 99.0 7.1E-11 1.5E-15 136.8 2.3 251 415-693 513-774 (889)
27 cd00116 LRR_RI Leucine-rich re 99.0 1.2E-11 2.6E-16 130.1 -5.3 235 426-699 24-288 (319)
28 cd00116 LRR_RI Leucine-rich re 98.9 2.5E-10 5.4E-15 120.1 -0.7 231 404-676 24-289 (319)
29 KOG0532 Leucine-rich repeat (L 98.7 9.7E-10 2.1E-14 115.2 -2.8 173 333-564 78-254 (722)
30 smart00255 TIR Toll - interleu 98.7 2.7E-08 6E-13 90.7 6.9 90 1-93 30-139 (140)
31 PF14580 LRR_9: Leucine-rich r 98.7 8.5E-09 1.8E-13 96.1 2.6 132 415-575 9-147 (175)
32 COG4886 Leucine-rich repeat (L 98.7 2.1E-08 4.5E-13 108.8 5.6 174 455-655 114-288 (394)
33 COG4886 Leucine-rich repeat (L 98.6 5.2E-08 1.1E-12 105.7 6.0 196 386-640 97-296 (394)
34 PF14580 LRR_9: Leucine-rich r 98.6 3.2E-08 6.9E-13 92.3 3.5 80 495-578 18-98 (175)
35 PLN03150 hypothetical protein; 98.5 1.7E-07 3.7E-12 106.7 8.1 105 459-578 420-525 (623)
36 PLN03150 hypothetical protein; 98.5 1.8E-07 3.9E-12 106.5 7.9 83 497-579 419-501 (623)
37 KOG3207 Beta-tubulin folding c 98.5 2.4E-08 5.3E-13 101.8 0.5 31 624-654 304-336 (505)
38 KOG3207 Beta-tubulin folding c 98.5 2.9E-08 6.3E-13 101.3 0.2 201 454-673 118-334 (505)
39 KOG1259 Nischarin, modulator o 98.4 2.7E-08 5.8E-13 96.5 -1.3 128 493-655 281-410 (490)
40 PF13855 LRR_8: Leucine rich r 98.4 2.8E-07 6.1E-12 70.3 4.4 60 496-556 1-61 (61)
41 PRK15386 type III secretion pr 98.4 1.6E-06 3.4E-11 90.8 10.9 50 497-554 73-122 (426)
42 PRK15386 type III secretion pr 98.4 1.7E-06 3.7E-11 90.4 10.7 73 492-577 48-121 (426)
43 KOG1259 Nischarin, modulator o 98.3 3.3E-07 7.2E-12 89.0 3.9 52 623-676 354-410 (490)
44 PF13855 LRR_8: Leucine rich r 98.3 5.4E-07 1.2E-11 68.8 4.0 60 457-531 1-60 (61)
45 KOG0531 Protein phosphatase 1, 98.0 1.7E-06 3.7E-11 94.2 1.3 176 453-655 91-266 (414)
46 PF13676 TIR_2: TIR domain; PD 98.0 8.6E-07 1.9E-11 75.8 -1.3 51 1-52 24-74 (102)
47 KOG2120 SCF ubiquitin ligase, 97.8 4.7E-07 1E-11 88.0 -6.2 194 458-693 186-391 (419)
48 KOG1859 Leucine-rich repeat pr 97.8 6.5E-07 1.4E-11 96.8 -6.6 173 378-580 105-291 (1096)
49 PF01637 Arch_ATPase: Archaeal 97.8 0.00039 8.4E-09 69.2 13.6 169 130-302 1-232 (234)
50 KOG1909 Ran GTPase-activating 97.7 9.1E-06 2E-10 81.2 0.6 82 612-699 209-308 (382)
51 KOG1859 Leucine-rich repeat pr 97.7 1.1E-06 2.3E-11 95.2 -7.2 82 497-582 165-246 (1096)
52 KOG1909 Ran GTPase-activating 97.6 1.7E-05 3.6E-10 79.4 0.5 116 453-580 181-310 (382)
53 PRK00411 cdc6 cell division co 97.6 0.0017 3.6E-08 70.5 16.0 198 125-323 27-282 (394)
54 PF12799 LRR_4: Leucine Rich r 97.6 6.5E-05 1.4E-09 52.5 3.2 41 622-663 2-42 (44)
55 KOG0531 Protein phosphatase 1, 97.5 1.8E-05 4E-10 86.1 -0.0 59 381-439 71-132 (414)
56 PF12799 LRR_4: Leucine Rich r 97.5 9E-05 2E-09 51.8 2.9 34 497-531 2-35 (44)
57 TIGR03015 pepcterm_ATPase puta 97.5 0.0083 1.8E-07 61.2 18.5 104 204-308 121-242 (269)
58 PRK06893 DNA replication initi 97.4 0.002 4.4E-08 63.8 12.9 141 151-301 39-200 (229)
59 KOG4341 F-box protein containi 97.3 1.6E-05 3.5E-10 81.3 -4.1 248 454-709 161-445 (483)
60 PF05729 NACHT: NACHT domain 97.2 0.0018 3.8E-08 60.6 8.7 70 204-273 79-162 (166)
61 TIGR00635 ruvB Holliday juncti 97.1 0.0069 1.5E-07 63.1 13.0 171 128-306 4-203 (305)
62 KOG4579 Leucine-rich repeat (L 97.1 3E-05 6.5E-10 67.2 -3.9 84 492-578 49-133 (177)
63 KOG4579 Leucine-rich repeat (L 97.1 3.2E-05 6.8E-10 67.0 -3.9 96 453-565 49-144 (177)
64 KOG2982 Uncharacterized conser 97.0 0.00024 5.2E-09 69.7 1.2 184 455-662 69-267 (418)
65 PRK00080 ruvB Holliday junctio 97.0 0.0081 1.8E-07 63.2 12.7 172 126-305 23-223 (328)
66 TIGR02928 orc1/cdc6 family rep 97.0 0.034 7.3E-07 59.6 17.3 175 125-299 12-241 (365)
67 PRK13342 recombination factor 96.9 0.015 3.2E-07 63.3 14.0 165 128-304 12-196 (413)
68 KOG3665 ZYG-1-like serine/thre 96.9 0.00027 5.8E-09 80.7 0.1 107 457-579 122-231 (699)
69 KOG2120 SCF ubiquitin ligase, 96.6 3.7E-05 8E-10 75.2 -8.1 178 520-704 185-378 (419)
70 PRK04841 transcriptional regul 96.5 0.03 6.4E-07 68.0 14.4 176 126-310 12-231 (903)
71 PTZ00112 origin recognition co 96.5 0.05 1.1E-06 62.3 14.4 183 125-308 752-986 (1164)
72 KOG1644 U2-associated snRNP A' 96.3 0.0092 2E-07 55.7 6.3 31 624-654 116-150 (233)
73 TIGR01242 26Sp45 26S proteasom 96.3 0.041 8.9E-07 58.8 12.4 162 126-298 120-328 (364)
74 KOG2739 Leucine-rich acidic nu 96.2 0.0025 5.4E-08 61.9 2.3 87 493-580 62-155 (260)
75 PF13173 AAA_14: AAA domain 96.2 0.019 4.2E-07 51.0 7.8 109 152-266 3-127 (128)
76 KOG3665 ZYG-1-like serine/thre 96.0 0.0056 1.2E-07 70.1 3.8 84 492-578 169-260 (699)
77 KOG1644 U2-associated snRNP A' 95.9 0.015 3.2E-07 54.4 5.5 83 492-575 60-147 (233)
78 PRK05564 DNA polymerase III su 95.8 0.51 1.1E-05 49.2 17.4 165 128-304 4-190 (313)
79 TIGR03420 DnaA_homol_Hda DnaA 95.8 0.16 3.5E-06 50.1 12.9 161 134-304 23-201 (226)
80 COG5238 RNA1 Ran GTPase-activa 95.7 0.0044 9.5E-08 60.3 1.2 186 455-655 28-253 (388)
81 KOG2739 Leucine-rich acidic nu 95.6 0.0034 7.4E-08 61.0 0.2 87 493-582 40-130 (260)
82 KOG2982 Uncharacterized conser 95.4 0.0023 5.1E-08 62.9 -1.6 61 518-578 69-131 (418)
83 PRK07471 DNA polymerase III su 95.4 0.96 2.1E-05 48.0 17.7 96 205-305 140-239 (365)
84 PF13306 LRR_5: Leucine rich r 95.2 0.085 1.8E-06 46.7 7.9 103 452-576 7-111 (129)
85 PLN03025 replication factor C 95.1 0.52 1.1E-05 49.3 14.5 163 127-298 12-194 (319)
86 PRK13341 recombination factor 94.9 0.39 8.5E-06 55.6 14.0 159 128-298 28-211 (725)
87 TIGR02397 dnaX_nterm DNA polym 94.8 1.4 3E-05 46.9 17.3 171 126-304 12-218 (355)
88 PRK07003 DNA polymerase III su 94.8 1.4 3.1E-05 50.4 17.6 164 127-298 15-214 (830)
89 PF00560 LRR_1: Leucine Rich R 94.5 0.017 3.6E-07 33.6 0.8 20 623-642 2-21 (22)
90 PF00560 LRR_1: Leucine Rich R 94.4 0.02 4.4E-07 33.2 1.2 21 497-518 1-21 (22)
91 PRK08727 hypothetical protein; 94.4 1.4 2.9E-05 43.8 15.0 138 152-298 42-198 (233)
92 PF13306 LRR_5: Leucine rich r 94.4 0.11 2.3E-06 46.1 6.4 80 492-575 8-88 (129)
93 PRK09087 hypothetical protein; 94.3 0.53 1.1E-05 46.4 11.6 135 151-302 44-193 (226)
94 PRK12402 replication factor C 94.3 1.2 2.7E-05 46.8 15.3 167 127-302 14-224 (337)
95 PRK04195 replication factor C 94.2 1 2.2E-05 50.1 14.9 167 126-302 12-200 (482)
96 PRK00440 rfc replication facto 94.0 1.6 3.5E-05 45.5 15.4 166 126-300 15-199 (319)
97 PRK08084 DNA replication initi 93.9 1.4 3E-05 43.8 13.9 139 150-298 44-203 (235)
98 TIGR02903 spore_lon_C ATP-depe 93.8 1.1 2.5E-05 51.1 14.4 111 195-306 281-397 (615)
99 PRK03992 proteasome-activating 93.6 1.7 3.6E-05 46.8 14.7 160 127-297 130-336 (389)
100 COG2256 MGS1 ATPase related to 93.4 1.3 2.8E-05 46.4 12.5 156 128-298 30-206 (436)
101 PTZ00202 tuzin; Provisional 93.4 1.1 2.4E-05 47.8 12.2 146 123-272 257-432 (550)
102 PRK14961 DNA polymerase III su 93.4 5 0.00011 42.8 17.8 167 127-301 15-217 (363)
103 PRK05642 DNA replication initi 93.3 3.8 8.3E-05 40.6 15.7 137 152-298 46-202 (234)
104 cd00009 AAA The AAA+ (ATPases 93.3 0.86 1.9E-05 40.8 10.4 107 131-245 1-131 (151)
105 PF00308 Bac_DnaA: Bacterial d 93.2 3.7 8.1E-05 40.2 15.2 120 150-276 33-181 (219)
106 PHA02544 44 clamp loader, smal 93.1 1.1 2.3E-05 46.9 12.1 140 125-272 18-171 (316)
107 PRK14963 DNA polymerase III su 93.1 2.4 5.2E-05 47.1 15.2 165 128-301 14-214 (504)
108 KOG3864 Uncharacterized conser 93.1 0.056 1.2E-06 50.7 2.1 81 622-703 102-189 (221)
109 KOG2123 Uncharacterized conser 92.9 0.0038 8.3E-08 60.9 -6.0 99 456-574 18-123 (388)
110 PRK07940 DNA polymerase III su 92.7 4.7 0.0001 43.3 16.2 94 205-304 116-213 (394)
111 TIGR00678 holB DNA polymerase 92.6 3.3 7E-05 39.5 13.7 89 205-300 95-187 (188)
112 PRK14960 DNA polymerase III su 92.4 9.2 0.0002 43.5 18.4 167 127-301 14-216 (702)
113 COG5238 RNA1 Ran GTPase-activa 92.4 0.037 8E-07 54.1 -0.1 181 492-676 26-253 (388)
114 PRK08691 DNA polymerase III su 92.3 2.4 5.1E-05 48.4 13.9 167 127-301 15-217 (709)
115 KOG1947 Leucine rich repeat pr 92.3 0.01 2.2E-07 66.2 -4.8 42 667-709 403-446 (482)
116 PRK08903 DnaA regulatory inact 92.3 3 6.5E-05 41.1 13.4 166 130-307 21-202 (227)
117 PRK12323 DNA polymerase III su 92.2 2.7 5.8E-05 47.5 13.9 169 127-303 15-224 (700)
118 KOG2123 Uncharacterized conser 92.0 0.0091 2E-07 58.4 -4.6 79 454-550 38-123 (388)
119 KOG3678 SARM protein (with ste 91.9 0.2 4.4E-06 52.3 4.6 115 1-124 639-761 (832)
120 PRK06645 DNA polymerase III su 91.8 3.6 7.8E-05 45.7 14.5 166 127-300 20-225 (507)
121 TIGR00362 DnaA chromosomal rep 91.8 8.5 0.00018 41.8 17.4 176 151-336 136-355 (405)
122 PRK14086 dnaA chromosomal repl 91.5 6.2 0.00013 44.5 15.9 120 152-277 315-462 (617)
123 PRK09112 DNA polymerase III su 91.2 4 8.7E-05 43.1 13.5 98 205-305 140-241 (351)
124 PRK14970 DNA polymerase III su 90.9 11 0.00023 40.4 16.8 165 127-299 16-204 (367)
125 KOG0991 Replication factor C, 90.8 2.4 5.2E-05 40.9 10.0 90 126-219 25-126 (333)
126 PRK14087 dnaA chromosomal repl 90.5 13 0.00027 40.9 17.1 97 207-303 207-318 (450)
127 PRK14962 DNA polymerase III su 90.5 8.6 0.00019 42.4 15.8 171 127-306 13-221 (472)
128 PRK14949 DNA polymerase III su 90.5 4 8.7E-05 47.8 13.5 165 127-300 15-216 (944)
129 TIGR02881 spore_V_K stage V sp 90.5 6.9 0.00015 39.5 14.2 67 207-275 106-192 (261)
130 PTZ00454 26S protease regulato 90.3 5.7 0.00012 42.8 13.9 162 126-298 143-351 (398)
131 COG1373 Predicted ATPase (AAA+ 90.2 3.8 8.2E-05 44.2 12.6 111 153-270 39-163 (398)
132 KOG2227 Pre-initiation complex 90.2 4.6 0.0001 43.2 12.5 151 125-276 147-340 (529)
133 PRK14955 DNA polymerase III su 90.1 14 0.0003 40.0 16.8 166 127-301 15-225 (397)
134 PTZ00361 26 proteosome regulat 89.9 3.7 8E-05 44.7 12.1 143 128-277 183-370 (438)
135 PF13504 LRR_7: Leucine rich r 89.8 0.21 4.5E-06 26.9 1.3 11 521-531 2-12 (17)
136 PRK05896 DNA polymerase III su 89.5 14 0.00031 41.6 16.6 171 127-305 15-222 (605)
137 COG1474 CDC6 Cdc6-related prot 89.5 10 0.00022 40.4 14.8 175 126-304 15-238 (366)
138 PRK07994 DNA polymerase III su 89.3 21 0.00045 40.9 17.8 170 127-301 15-217 (647)
139 KOG1947 Leucine rich repeat pr 89.2 0.046 1E-06 60.9 -3.2 112 454-578 185-305 (482)
140 PF13401 AAA_22: AAA domain; P 89.1 1.6 3.5E-05 38.5 7.5 72 169-243 50-125 (131)
141 PRK00149 dnaA chromosomal repl 89.0 15 0.00032 40.6 16.4 179 151-339 148-370 (450)
142 PRK14957 DNA polymerase III su 88.9 9.4 0.0002 42.8 14.7 165 127-299 15-215 (546)
143 PRK14956 DNA polymerase III su 88.7 10 0.00022 41.6 14.2 164 127-299 17-217 (484)
144 COG3899 Predicted ATPase [Gene 88.6 5.5 0.00012 47.4 13.3 105 204-310 152-266 (849)
145 smart00370 LRR Leucine-rich re 88.2 0.39 8.4E-06 29.0 1.9 22 543-564 1-22 (26)
146 smart00369 LRR_TYP Leucine-ric 88.2 0.39 8.4E-06 29.0 1.9 22 543-564 1-22 (26)
147 TIGR02880 cbbX_cfxQ probable R 87.9 28 0.0006 35.7 16.4 69 206-274 121-208 (284)
148 PRK06620 hypothetical protein; 87.7 7.3 0.00016 38.0 11.5 108 152-275 45-161 (214)
149 PRK06305 DNA polymerase III su 87.5 22 0.00047 39.1 16.3 164 127-299 16-217 (451)
150 PRK14959 DNA polymerase III su 87.4 19 0.00042 40.8 15.9 103 205-308 118-225 (624)
151 KOG0473 Leucine-rich repeat pr 87.4 0.022 4.7E-07 54.3 -5.9 88 452-557 37-124 (326)
152 PF08937 DUF1863: MTH538 TIR-l 87.2 0.54 1.2E-05 41.8 3.1 46 7-52 50-95 (130)
153 PRK14951 DNA polymerase III su 86.9 46 0.001 38.0 18.7 167 127-301 15-222 (618)
154 PRK14954 DNA polymerase III su 86.9 30 0.00065 39.6 17.3 92 205-299 126-223 (620)
155 PRK09111 DNA polymerase III su 86.6 50 0.0011 37.7 18.8 173 126-302 22-231 (598)
156 PRK08451 DNA polymerase III su 86.0 31 0.00068 38.6 16.5 166 127-301 13-215 (535)
157 PRK14964 DNA polymerase III su 85.9 48 0.001 36.7 17.7 169 127-300 12-213 (491)
158 KOG0989 Replication factor C, 85.7 30 0.00065 35.2 14.4 208 126-339 34-267 (346)
159 PRK07764 DNA polymerase III su 85.6 38 0.00082 40.2 17.7 164 127-299 14-216 (824)
160 TIGR02639 ClpA ATP-dependent C 85.6 7 0.00015 46.0 11.9 153 107-274 164-358 (731)
161 PRK14971 DNA polymerase III su 85.2 42 0.0009 38.5 17.5 167 127-299 16-217 (614)
162 PRK14958 DNA polymerase III su 84.6 49 0.0011 37.0 17.3 166 127-301 15-217 (509)
163 CHL00176 ftsH cell division pr 84.4 20 0.00042 41.3 14.4 163 126-297 181-387 (638)
164 COG3903 Predicted ATPase [Gene 84.0 1.6 3.6E-05 45.8 5.1 148 195-345 77-240 (414)
165 PRK14950 DNA polymerase III su 83.8 23 0.00049 40.5 14.7 169 127-303 15-220 (585)
166 PRK14969 DNA polymerase III su 83.7 52 0.0011 37.0 17.2 164 127-299 15-215 (527)
167 KOG2543 Origin recognition com 83.4 3.4 7.3E-05 43.0 6.9 144 126-272 4-191 (438)
168 KOG4341 F-box protein containi 83.0 1 2.2E-05 47.2 3.1 16 455-470 318-333 (483)
169 PRK07133 DNA polymerase III su 82.8 29 0.00063 40.2 14.8 165 127-299 17-214 (725)
170 PF05673 DUF815: Protein of un 82.5 9.9 0.00021 37.5 9.5 117 124-249 23-156 (249)
171 PRK05707 DNA polymerase III su 81.9 21 0.00045 37.4 12.4 94 206-304 106-203 (328)
172 PRK14952 DNA polymerase III su 81.3 72 0.0016 36.3 17.1 164 127-299 12-214 (584)
173 TIGR03689 pup_AAA proteasome A 81.0 19 0.00041 40.0 12.2 143 127-275 181-379 (512)
174 PF07725 LRR_3: Leucine Rich R 80.5 1.5 3.3E-05 24.6 1.8 19 426-444 1-19 (20)
175 PRK07399 DNA polymerase III su 80.2 44 0.00095 34.8 14.1 94 205-303 123-220 (314)
176 PRK12422 chromosomal replicati 80.0 12 0.00025 41.1 10.2 119 151-276 141-286 (445)
177 PRK14088 dnaA chromosomal repl 79.2 55 0.0012 35.9 15.1 138 151-297 130-298 (440)
178 TIGR01241 FtsH_fam ATP-depende 79.2 36 0.00078 38.0 14.1 163 127-298 54-260 (495)
179 PRK11034 clpA ATP-dependent Cl 78.7 19 0.00041 42.3 11.9 136 128-274 186-362 (758)
180 PRK06647 DNA polymerase III su 78.1 87 0.0019 35.5 16.5 167 127-301 15-217 (563)
181 PF05496 RuvB_N: Holliday junc 77.7 40 0.00086 32.9 11.7 166 126-301 22-218 (233)
182 PRK14965 DNA polymerase III su 77.6 1.1E+02 0.0024 34.8 17.5 163 127-298 15-214 (576)
183 PF13191 AAA_16: AAA ATPase do 77.6 3.3 7.2E-05 39.0 4.6 34 130-163 2-36 (185)
184 smart00370 LRR Leucine-rich re 77.4 1.7 3.7E-05 26.1 1.6 18 496-514 2-19 (26)
185 smart00369 LRR_TYP Leucine-ric 77.4 1.7 3.7E-05 26.1 1.6 18 496-514 2-19 (26)
186 PRK12377 putative replication 77.2 76 0.0016 31.7 14.2 60 151-216 101-173 (248)
187 CHL00181 cbbX CbbX; Provisiona 75.3 1E+02 0.0022 31.6 16.1 70 207-276 123-211 (287)
188 PRK05563 DNA polymerase III su 74.8 1.1E+02 0.0023 34.9 16.2 166 127-300 15-216 (559)
189 CHL00195 ycf46 Ycf46; Provisio 74.3 1.5E+02 0.0032 33.0 20.7 144 127-277 227-408 (489)
190 TIGR03345 VI_ClpV1 type VI sec 74.2 34 0.00074 40.9 12.6 151 107-272 169-361 (852)
191 COG0593 DnaA ATPase involved i 73.9 1E+02 0.0022 33.2 14.7 182 150-339 112-333 (408)
192 PF14516 AAA_35: AAA-like doma 73.1 70 0.0015 33.5 13.5 54 252-310 192-245 (331)
193 COG2909 MalT ATP-dependent tra 72.8 83 0.0018 36.8 14.3 174 127-309 18-238 (894)
194 CHL00095 clpC Clp protease ATP 71.5 33 0.00071 41.0 11.7 134 128-272 179-352 (821)
195 PRK08181 transposase; Validate 71.4 11 0.00024 38.1 6.7 12 152-163 107-118 (269)
196 TIGR03346 chaperone_ClpB ATP-d 69.8 49 0.0011 39.8 12.7 134 128-273 173-348 (852)
197 KOG0473 Leucine-rich repeat pr 66.8 0.23 4.9E-06 47.7 -6.0 83 426-534 43-125 (326)
198 PRK08058 DNA polymerase III su 66.7 1.7E+02 0.0037 30.6 14.9 69 205-273 109-181 (329)
199 PRK08116 hypothetical protein; 66.6 20 0.00043 36.3 7.4 42 201-243 174-220 (268)
200 smart00364 LRR_BAC Leucine-ric 65.1 4.1 8.8E-05 24.6 1.2 16 623-638 4-19 (26)
201 TIGR02639 ClpA ATP-dependent C 65.0 2E+02 0.0042 34.0 16.2 96 127-229 453-578 (731)
202 COG2384 Predicted SAM-dependen 64.1 13 0.00028 35.8 5.0 57 148-211 83-139 (226)
203 TIGR01243 CDC48 AAA family ATP 62.9 1.2E+02 0.0025 35.9 13.9 163 127-298 177-381 (733)
204 PRK14953 DNA polymerase III su 61.8 2.6E+02 0.0057 31.1 18.9 168 127-302 15-218 (486)
205 PRK14948 DNA polymerase III su 61.7 3E+02 0.0065 31.7 20.0 168 127-302 15-220 (620)
206 PRK10865 protein disaggregatio 61.0 81 0.0018 37.9 12.2 135 128-274 178-354 (857)
207 TIGR00602 rad24 checkpoint pro 60.3 1.4E+02 0.0031 34.3 13.3 41 126-166 82-125 (637)
208 PF13516 LRR_6: Leucine Rich r 59.9 4.6 0.0001 23.6 0.9 14 544-557 2-15 (24)
209 smart00367 LRR_CC Leucine-rich 59.5 6.7 0.00014 23.5 1.5 13 644-656 2-14 (26)
210 PF00004 AAA: ATPase family as 59.4 88 0.0019 27.0 9.6 57 154-217 1-69 (132)
211 PRK07952 DNA replication prote 58.7 2E+02 0.0043 28.7 14.7 27 45-71 7-34 (244)
212 TIGR01243 CDC48 AAA family ATP 58.2 2E+02 0.0044 33.9 14.9 160 128-298 453-657 (733)
213 PRK11889 flhF flagellar biosyn 58.0 1.8E+02 0.004 31.2 12.6 13 150-162 240-252 (436)
214 KOG3864 Uncharacterized conser 57.3 6.4 0.00014 37.4 1.7 38 424-469 100-137 (221)
215 smart00365 LRR_SD22 Leucine-ri 55.9 9.3 0.0002 23.2 1.7 16 543-558 1-16 (26)
216 TIGR03346 chaperone_ClpB ATP-d 55.1 1.4E+02 0.0031 35.9 13.0 35 128-162 565-606 (852)
217 TIGR03345 VI_ClpV1 type VI sec 54.9 1.2E+02 0.0025 36.6 12.0 35 128-162 566-607 (852)
218 COG0466 Lon ATP-dependent Lon 53.0 1.3E+02 0.0028 34.6 11.0 143 126-275 321-509 (782)
219 PF02463 SMC_N: RecF/RecN/SMC 52.1 13 0.00029 36.2 3.2 45 206-250 158-205 (220)
220 PRK08769 DNA polymerase III su 51.0 1E+02 0.0022 32.1 9.6 94 205-305 112-209 (319)
221 PRK06526 transposase; Provisio 49.1 44 0.00096 33.5 6.4 13 152-164 99-111 (254)
222 PRK10733 hflB ATP-dependent me 48.9 2.9E+02 0.0062 32.1 13.7 74 204-277 242-338 (644)
223 PRK10865 protein disaggregatio 46.0 4.4E+02 0.0095 31.8 15.1 36 127-162 567-609 (857)
224 COG1484 DnaC DNA replication p 46.0 60 0.0013 32.6 6.8 62 150-217 104-178 (254)
225 CHL00095 clpC Clp protease ATP 45.7 2.2E+02 0.0049 34.1 12.6 110 128-243 509-661 (821)
226 PF04816 DUF633: Family of unk 45.4 24 0.00052 34.1 3.7 59 150-215 66-124 (205)
227 PRK06964 DNA polymerase III su 44.8 4E+02 0.0087 28.1 13.6 91 205-304 131-225 (342)
228 PRK06090 DNA polymerase III su 44.5 1.6E+02 0.0035 30.6 9.8 90 206-304 108-201 (319)
229 COG2607 Predicted ATPase (AAA+ 43.8 3.4E+02 0.0074 27.0 12.2 116 124-248 56-188 (287)
230 PHA00729 NTP-binding motif con 42.1 3E+02 0.0064 27.1 10.6 108 149-276 15-142 (226)
231 KOG1514 Origin recognition com 41.7 5E+02 0.011 30.0 13.3 112 126-241 394-546 (767)
232 cd01128 rho_factor Transcripti 41.0 27 0.00059 34.9 3.4 15 204-218 101-115 (249)
233 PF01695 IstB_IS21: IstB-like 40.5 22 0.00048 33.5 2.6 12 152-163 48-59 (178)
234 PRK09183 transposase/IS protei 39.6 86 0.0019 31.5 6.8 14 152-165 103-116 (259)
235 KOG0741 AAA+-type ATPase [Post 38.7 3.3E+02 0.0072 30.3 11.0 135 150-294 537-704 (744)
236 PRK06921 hypothetical protein; 38.5 87 0.0019 31.7 6.7 26 151-182 117-142 (266)
237 COG0542 clpA ATP-binding subun 38.5 2.7E+02 0.0058 32.8 11.1 109 128-242 491-642 (786)
238 PF13177 DNA_pol3_delta2: DNA 38.2 1.8E+02 0.0038 26.8 8.2 57 205-261 101-161 (162)
239 smart00368 LRR_RI Leucine rich 37.2 27 0.00058 21.4 1.7 14 544-557 2-15 (28)
240 PF14532 Sigma54_activ_2: Sigm 36.6 73 0.0016 28.3 5.3 103 131-243 1-109 (138)
241 PRK06835 DNA replication prote 36.5 1.1E+02 0.0025 31.9 7.3 84 152-242 184-287 (329)
242 smart00382 AAA ATPases associa 36.0 1.2E+02 0.0027 25.9 6.8 23 198-220 69-92 (148)
243 TIGR01069 mutS2 MutS2 family p 35.2 46 0.00099 39.3 4.6 112 205-324 401-521 (771)
244 PRK06871 DNA polymerase III su 35.1 3.1E+02 0.0067 28.6 10.2 92 205-302 106-201 (325)
245 COG1222 RPT1 ATP-dependent 26S 34.8 5.8E+02 0.012 27.0 13.3 185 128-323 151-392 (406)
246 PF08357 SEFIR: SEFIR domain; 34.6 32 0.0007 31.1 2.6 40 1-40 30-71 (150)
247 KOG2004 Mitochondrial ATP-depe 34.1 95 0.002 35.6 6.4 86 126-218 409-517 (906)
248 PRK10787 DNA-binding ATP-depen 33.6 8.9E+02 0.019 28.9 17.2 142 127-275 321-507 (784)
249 cd00561 CobA_CobO_BtuR ATP:cor 33.5 52 0.0011 30.3 3.7 49 197-245 85-139 (159)
250 KOG2228 Origin recognition com 33.2 6E+02 0.013 26.7 12.3 35 128-162 24-60 (408)
251 COG2236 Predicted phosphoribos 32.5 55 0.0012 31.1 3.8 16 203-219 85-100 (192)
252 PRK11034 clpA ATP-dependent Cl 30.6 3.7E+02 0.008 31.8 10.9 37 128-164 458-501 (758)
253 PF05621 TniB: Bacterial TniB 30.5 6.2E+02 0.013 26.1 11.8 134 166-302 105-259 (302)
254 KOG0731 AAA+-type ATPase conta 29.2 8.3E+02 0.018 28.8 12.9 168 126-301 309-521 (774)
255 PF10137 TIR-like: Predicted n 28.8 65 0.0014 28.3 3.4 27 11-37 34-60 (125)
256 KOG4308 LRR-containing protein 28.7 0.86 1.9E-05 50.1 -10.3 170 486-655 105-301 (478)
257 COG0470 HolB ATPase involved i 27.8 4.4E+02 0.0096 27.0 10.3 56 205-260 108-167 (325)
258 PRK04132 replication factor C 27.5 6.1E+02 0.013 30.4 11.9 95 206-301 630-728 (846)
259 PRK08939 primosomal protein Dn 26.6 1.5E+02 0.0032 30.7 6.1 37 206-242 217-259 (306)
260 PF13604 AAA_30: AAA domain; P 26.3 5.7E+02 0.012 24.3 9.9 37 206-244 93-131 (196)
261 KOG2028 ATPase related to the 25.6 5.7E+02 0.012 27.1 9.7 116 147-272 158-292 (554)
262 PRK07993 DNA polymerase III su 25.5 4.8E+02 0.01 27.4 9.8 93 205-303 107-203 (334)
263 cd03028 GRX_PICOT_like Glutare 25.0 39 0.00085 27.6 1.3 22 23-46 3-24 (90)
264 PF05725 FNIP: FNIP Repeat; I 24.6 98 0.0021 21.3 3.0 30 644-674 12-43 (44)
265 TIGR01425 SRP54_euk signal rec 23.9 7.2E+02 0.016 27.1 10.8 17 150-166 99-115 (429)
266 KOG2170 ATPase of the AAA+ sup 23.6 3.2E+02 0.007 28.1 7.4 76 148-229 107-203 (344)
267 KOG3763 mRNA export factor TAP 23.5 33 0.00072 37.7 0.7 12 495-506 243-254 (585)
268 PRK08699 DNA polymerase III su 22.7 8.8E+02 0.019 25.3 14.0 84 209-301 116-203 (325)
269 TIGR00767 rho transcription te 22.2 99 0.0021 33.2 3.8 15 204-218 253-267 (415)
270 KOG0780 Signal recognition par 21.6 1E+03 0.022 25.6 11.5 14 149-162 99-112 (483)
271 PF00910 RNA_helicase: RNA hel 21.2 1E+02 0.0022 26.0 3.2 61 154-218 1-61 (107)
272 COG3267 ExeA Type II secretory 20.8 8.6E+02 0.019 24.4 12.4 102 204-305 128-246 (269)
273 PRK09376 rho transcription ter 20.7 1.3E+02 0.0028 32.3 4.3 16 204-219 254-269 (416)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=3e-91 Score=839.73 Aligned_cols=655 Identities=34% Similarity=0.568 Sum_probs=535.8
Q ss_pred CceEeecCCCCCCCCcccHHHHHHHHhccceeEEeccCcccchhhhhhhccc-------------------Ccccccccc
Q 047161 1 GVKIFEDHKELERGKAVSPGLFKAIEESRFSVVVFSRNYAYSTWCLDELAKI-------------------PTVVRKQTR 61 (720)
Q Consensus 1 gi~~f~d~~~l~~g~~~~~~l~~ai~~s~~~ivv~S~~ya~s~wcl~el~~i-------------------p~~vr~~~~ 61 (720)
||.||+|+ ++++|+.|++++++||++|+|||||||++||+|+||||||++| |+|||+|+|
T Consensus 40 ~i~~f~d~-~~~~g~~~~~~l~~~i~~s~~~ivv~s~~ya~s~wcl~el~~i~~~~~~~~~~v~pvfy~v~p~~v~~~~g 118 (1153)
T PLN03210 40 LIIAFKDN-EIERSQSLDPELKQAIRDSRIAVVVFSKNYASSSWCLNELLEIVRCKEELGQLVIPVFYGLDPSHVRKQTG 118 (1153)
T ss_pred CCeEEccC-CccCCCcccHHHHHHHHhCeEEEEEecCCcccchHHHHHHHHHHHhhhhcCceEEEEEecccHHHHhhccc
Confidence 89999998 7999999999999999999999999999999999999999999 999999999
Q ss_pred hHHHHHHHHHHHhhhChHHHHHHHHHHHHhccCCcccccC-hhHHHHHHHHHHhhhhccCCCccCCCCCccccchhHHHH
Q 047161 62 SFHEAFAKHEEAFRESTEKVQNWRHALTEVANPSGWHLKD-RHEVEFIQEIVKEISRKKGPRTLGILDDLVEMNSRLKKL 140 (720)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~v~~w~~~l~~~~~~~g~~~~~-~~e~~~i~~i~~~i~~~~~~~~~~~~~~~vG~~~~~~~i 140 (720)
+|++||.+|+++. +.+++++||+||++||+++||++.. ++|+++|++||++|.+++..+++.+.+++|||+++++++
T Consensus 119 ~f~~~f~~~~~~~--~~~~~~~w~~al~~~~~~~g~~~~~~~~E~~~i~~Iv~~v~~~l~~~~~~~~~~~vG~~~~l~~l 196 (1153)
T PLN03210 119 DFGEAFEKTCQNK--TEDEKIQWKQALTDVANILGYHSQNWPNEAKMIEEIANDVLGKLNLTPSNDFEDFVGIEDHIAKM 196 (1153)
T ss_pred hHHHHHHHHhccc--chhHHHHHHHHHHHHhCcCceecCCCCCHHHHHHHHHHHHHHhhccccCcccccccchHHHHHHH
Confidence 9999999998753 4678999999999999999999876 889999999999999999988888889999999999999
Q ss_pred HHhhhccCCCeEEEEEecCCCccccchhc--------------------------------------HHHHHHHHHHhhh
Q 047161 141 RLLLDAESRDVRMIGICGMGGVELSEKDG--------------------------------------LIALQKQLLSKTL 182 (720)
Q Consensus 141 ~~~L~~~~~~~~vi~I~G~gGi~vs~~~~--------------------------------------~~~~~~~il~~~~ 182 (720)
..+|..+.++++|||||||||++.++-+. ...++++++.+++
T Consensus 197 ~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~l~~il 276 (1153)
T PLN03210 197 SSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFISKSMEIYSSANPDDYNMKLHLQRAFLSEIL 276 (1153)
T ss_pred HHHHccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeeccccccchhhcccccccccchhHHHHHHHHHHHh
Confidence 99998788899999999999992221100 1234455555544
Q ss_pred hcccceeccchhhHHHHHHHHhcCCeEEEEecCCcHHHHHHHhccCCCCCCCCeEEEEcCChhhhhhccccceEecCCCC
Q 047161 183 MEIDIEIRNDFDGIKMIKRELRRRNVLVVIDDAVHIRQLNRLAGKHSWFGSGSRIIIPTRDEHLLRTLRVDGVYKVEKLD 262 (720)
Q Consensus 183 ~~~~~~~~~~~~~~~~l~~~l~~kr~LlVLDdv~~~~~~~~l~~~~~~~~~gsrIivTTR~~~v~~~~~~~~~~~l~~L~ 262 (720)
........ ....+++++++||+||||||||+.++|+.+.....|+++|||||||||+++++..++++++|+|+.|+
T Consensus 277 ~~~~~~~~----~~~~~~~~L~~krvLLVLDdv~~~~~l~~L~~~~~~~~~GsrIIiTTrd~~vl~~~~~~~~~~v~~l~ 352 (1153)
T PLN03210 277 DKKDIKIY----HLGAMEERLKHRKVLIFIDDLDDQDVLDALAGQTQWFGSGSRIIVITKDKHFLRAHGIDHIYEVCLPS 352 (1153)
T ss_pred CCCCcccC----CHHHHHHHHhCCeEEEEEeCCCCHHHHHHHHhhCccCCCCcEEEEEeCcHHHHHhcCCCeEEEecCCC
Confidence 33322221 12568889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCC-CCCchHHHHHHHHHHHhCCCchHHHHhhhhccCCCHHHHHHHHhhhhcCCchhHHHHHHhhhcC
Q 047161 263 DDEALELFNKRAFDG-QPSKDYVELIKRIVKYADGLPFALETLGSVLFGRSVDGWRSTLERLNKHSADEILDVLEISFNG 341 (720)
Q Consensus 263 ~~~s~~Lf~~~af~~-~~~~~~~~~~~~i~~~c~glPLai~~~g~~l~~k~~~~W~~~l~~l~~~~~~~il~~L~lSyn~ 341 (720)
.+|||+||+++||+. .++.++++++++|+++|+|+|||++++|+.|++++..+|++++++++..++.+|.++|++||++
T Consensus 353 ~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k~~~~W~~~l~~L~~~~~~~I~~~L~~SYd~ 432 (1153)
T PLN03210 353 NELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLNVLGSYLRGRDKEDWMDMLPRLRNGLDGKIEKTLRVSYDG 432 (1153)
T ss_pred HHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHhCccHHHHHHHHHhhhc
Confidence 999999999999988 6777899999999999999999999999999999999999999999988889999999999999
Q ss_pred Cchh-----hhhhhcCC---------------------------------------------------------CCCCCc
Q 047161 342 LKGR-----IEIMRKSP---------------------------------------------------------EEPGKC 359 (720)
Q Consensus 342 L~~~-----~~~~~~~p---------------------------------------------------------~~~~~l 359 (720)
|++. |.+++-|+ .+.++.
T Consensus 433 L~~~~~k~~Fl~ia~ff~~~~~~~v~~~l~~~~~~~~~~l~~L~~ksLi~~~~~~~~MHdLl~~~~r~i~~~~~~~~~~r 512 (1153)
T PLN03210 433 LNNKKDKAIFRHIACLFNGEKVNDIKLLLANSDLDVNIGLKNLVDKSLIHVREDIVEMHSLLQEMGKEIVRAQSNEPGER 512 (1153)
T ss_pred cCccchhhhhheehhhcCCCCHHHHHHHHHhcCCCchhChHHHHhcCCEEEcCCeEEhhhHHHHHHHHHHHhhcCCCCcc
Confidence 9653 11111111 223455
Q ss_pred cccchhhhhHHHHhcCc-----------------------chhccCCcceEEEecc----------ccCCcccCccccce
Q 047161 360 SRLWKVADVSHVLRRNT-----------------------AFLKMTNLRLLKIHNL----------QLPAGLESLSDELR 406 (720)
Q Consensus 360 ~~Lw~~~~~~~~~~~~~-----------------------~~~~l~~L~~L~l~~~----------~l~~~~~~l~~~l~ 406 (720)
.++|..+++...+...+ +|.+|.+|++|++..+ .+|.++..++..++
T Consensus 513 ~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr 592 (1153)
T PLN03210 513 EFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLR 592 (1153)
T ss_pred eeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccE
Confidence 67777777666554321 6899999999999654 35677888899999
Q ss_pred EEEecCCCCCCCCCCCCCCcceEeeCCCCchhHHhhhcc--------------CccccCCCCCCCCceeeecCCCCCCCC
Q 047161 407 LLQWHGYPLKSLPSSMEMDKTLECNMCYRRIEQFWKGIK--------------NLIRTPDFTGAPNLEELILDGCKRLQN 472 (720)
Q Consensus 407 ~L~~~~~~~~~lp~~~~~~~l~~L~l~~~~i~~l~~~~~--------------~l~~~~~~~~l~~L~~L~L~~~~~l~~ 472 (720)
.|.|.+|+++.+|..+...+++.|++.++++..+|.+.. .+..+|+++.+++|+.|+|++|..+
T Consensus 593 ~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L-- 670 (1153)
T PLN03210 593 LLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSL-- 670 (1153)
T ss_pred EEEecCCCCCCCCCcCCccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCc--
Confidence 999999999999999999999999999999999987643 2344556666667777777666543
Q ss_pred CCCCcccCccchhhhHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCCCcccCcCcCCCCCCCEEecc
Q 047161 473 CTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMPESLGQMESLEELDVS 552 (720)
Q Consensus 473 ~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~L~ 552 (720)
..+|.. ++++++|++|++++|..++.+|..+ ++++|++|++++|..++.+|.. ..+|++|+++
T Consensus 671 ----~~lp~s---------i~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~ 733 (1153)
T PLN03210 671 ----VELPSS---------IQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLD 733 (1153)
T ss_pred ----cccchh---------hhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecC
Confidence 556655 8889999999999988888899877 7899999999999888888754 3567888888
Q ss_pred CcccccCCcccc-----------------------------CCcCCceEEEeecCCCCCCCCCcccccccccccccCCCC
Q 047161 553 GTVIRQPVPSIF-----------------------------FPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSD 603 (720)
Q Consensus 553 ~n~l~~~~~~~~-----------------------------~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~ 603 (720)
+|.+..+|.... ..+++|+.|++++|......+..+..+..|+.+.+..+.
T Consensus 734 ~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~ 813 (1153)
T PLN03210 734 ETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCI 813 (1153)
T ss_pred CCccccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCC
Confidence 888776664321 112456667776665555556667788888888887654
Q ss_pred cccccCCCCCCCCCCCcc----------------cccEEECCCCCCccccccccCCCCCceeeccccccccccCCcc---
Q 047161 604 SMALMLPSLSGLCSLTEL----------------NLKKLNLRRNNFVSLRGTINHLPKFKHLKLDDCKRLRSLSELP--- 664 (720)
Q Consensus 604 ~~~~~~~~l~~l~~L~~L----------------~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~lp--- 664 (720)
.... +|...++++|+.| +|+.|+|++|.++.+|.++..+++|+.|++++|++++.+|..+
T Consensus 814 ~L~~-LP~~~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L 892 (1153)
T PLN03210 814 NLET-LPTGINLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKL 892 (1153)
T ss_pred CcCe-eCCCCCccccCEEECCCCCccccccccccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccccc
Confidence 3322 2221133344333 4578999999999999999999999999999999999988644
Q ss_pred cccceEeeecCcccccch
Q 047161 665 SDIKKVRVHGCTSLATIS 682 (720)
Q Consensus 665 ~~L~~L~l~~c~~L~~lp 682 (720)
++|+.|++.+|.+|..++
T Consensus 893 ~~L~~L~l~~C~~L~~~~ 910 (1153)
T PLN03210 893 KHLETVDFSDCGALTEAS 910 (1153)
T ss_pred cCCCeeecCCCccccccc
Confidence 568888999999998765
No 2
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=9.7e-54 Score=488.17 Aligned_cols=523 Identities=22% Similarity=0.315 Sum_probs=367.6
Q ss_pred cccchhHHHHHHhhhccCCCeEEEEEecCCCc--------------------------cccchhcHHHHHHHHHHhhhhc
Q 047161 131 VEMNSRLKKLRLLLDAESRDVRMIGICGMGGV--------------------------ELSEKDGLIALQKQLLSKTLME 184 (720)
Q Consensus 131 vG~~~~~~~i~~~L~~~~~~~~vi~I~G~gGi--------------------------~vs~~~~~~~~~~~il~~~~~~ 184 (720)
||.+..++++.+.|..++. .+|||+||||+ +||+.|+...++++|+..+..
T Consensus 161 VG~e~~~~kl~~~L~~d~~--~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~- 237 (889)
T KOG4658|consen 161 VGLETMLEKLWNRLMEDDV--GIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLGL- 237 (889)
T ss_pred ccHHHHHHHHHHHhccCCC--CEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHhcc-
Confidence 9999999999999975444 99999999999 789999999999999998433
Q ss_pred cccee--ccchhhHHHHHHHHhcCCeEEEEecCCcHHHHHHHhccCCCCCCCCeEEEEcCChhhhhh-ccccceEecCCC
Q 047161 185 IDIEI--RNDFDGIKMIKRELRRRNVLVVIDDAVHIRQLNRLAGKHSWFGSGSRIIIPTRDEHLLRT-LRVDGVYKVEKL 261 (720)
Q Consensus 185 ~~~~~--~~~~~~~~~l~~~l~~kr~LlVLDdv~~~~~~~~l~~~~~~~~~gsrIivTTR~~~v~~~-~~~~~~~~l~~L 261 (720)
..... .+.++.+.+|.+.|++|||+|||||||+..+|+.+..++|...+||+|++|||++.|+.. |+++..++++.|
T Consensus 238 ~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~L 317 (889)
T KOG4658|consen 238 LDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIEVECL 317 (889)
T ss_pred CCcccchhhHHHHHHHHHHHhccCceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCcccccccc
Confidence 22222 233688899999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred CHHHHHHHHHHHhcCC--CCCchHHHHHHHHHHHhCCCchHHHHhhhhccCC-CHHHHHHHHhhhhcC-------CchhH
Q 047161 262 DDDEALELFNKRAFDG--QPSKDYVELIKRIVKYADGLPFALETLGSVLFGR-SVDGWRSTLERLNKH-------SADEI 331 (720)
Q Consensus 262 ~~~~s~~Lf~~~af~~--~~~~~~~~~~~~i~~~c~glPLai~~~g~~l~~k-~~~~W~~~l~~l~~~-------~~~~i 331 (720)
+.+|||.||++.||.. ...+.+.++|++++++|+|+|||++++|+.|+.| +.++|+.+.+.++.. ..+.|
T Consensus 318 ~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i 397 (889)
T KOG4658|consen 318 TPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEESI 397 (889)
T ss_pred CccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhhh
Confidence 9999999999999988 4445599999999999999999999999999985 778999999977654 24679
Q ss_pred HHHHHhhhcCCchh----hhhhhcCCCCCC----CccccchhhhhHHHHhcCc--------chhc----------c--CC
Q 047161 332 LDVLEISFNGLKGR----IEIMRKSPEEPG----KCSRLWKVADVSHVLRRNT--------AFLK----------M--TN 383 (720)
Q Consensus 332 l~~L~lSyn~L~~~----~~~~~~~p~~~~----~l~~Lw~~~~~~~~~~~~~--------~~~~----------l--~~ 383 (720)
+++|++||++|+.+ |+||+.||+++. .++.+|+++||++...... .++. - .+
T Consensus 398 ~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~~~ 477 (889)
T KOG4658|consen 398 LPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDEGR 477 (889)
T ss_pred HHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccccc
Confidence 99999999999964 999999999974 8999999999987733211 1110 0 34
Q ss_pred cceEEEeccccC------C---------------cccCc-----cccceEEEecCCCCCCCCCCCCCCcceEeeCCCCc-
Q 047161 384 LRLLKIHNLQLP------A---------------GLESL-----SDELRLLQWHGYPLKSLPSSMEMDKTLECNMCYRR- 436 (720)
Q Consensus 384 L~~L~l~~~~l~------~---------------~~~~l-----~~~l~~L~~~~~~~~~lp~~~~~~~l~~L~l~~~~- 436 (720)
....+||+.... . +.... ....|...+.+|.+..++......++++|-+..+.
T Consensus 478 ~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~ 557 (889)
T KOG4658|consen 478 KETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSD 557 (889)
T ss_pred eeEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEEeccchhhccCCCCCCccceEEEeecch
Confidence 567777764220 0 11111 12456777777777777776666667777666664
Q ss_pred -hhHHhhhccCccccCCCCCCCCceeeecCCCCCCCCCCCCcccCccchhhhHHHHhccCCCCcEEeccCCCCCcccCCC
Q 047161 437 -IEQFWKGIKNLIRTPDFTGAPNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILVRLPST 515 (720)
Q Consensus 437 -i~~l~~~~~~l~~~~~~~~l~~L~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~ 515 (720)
+...... .|..++.|++|||++|..+ .+||.. |+.|-+||||+++++. +..+|.+
T Consensus 558 ~l~~is~~--------ff~~m~~LrVLDLs~~~~l------~~LP~~---------I~~Li~LryL~L~~t~-I~~LP~~ 613 (889)
T KOG4658|consen 558 WLLEISGE--------FFRSLPLLRVLDLSGNSSL------SKLPSS---------IGELVHLRYLDLSDTG-ISHLPSG 613 (889)
T ss_pred hhhhcCHH--------HHhhCcceEEEECCCCCcc------CcCChH---------HhhhhhhhcccccCCC-ccccchH
Confidence 2222111 2677888888888887654 677777 8888888888888887 6688888
Q ss_pred CCCCCCCCEEeccCCCCCcccCcCcCCCCCCCEEeccCcccccCCc--cccCCcCCceEEEeecCCCCCCCCCccccccc
Q 047161 516 INGWKSLRTVNLSRCSKLENMPESLGQMESLEELDVSGTVIRQPVP--SIFFPSRILKVYLFVDTRDHRTSSSSWHLWFP 593 (720)
Q Consensus 516 i~~l~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~L~~n~l~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~ 593 (720)
+++|..|.+|++..+..+..+|.....|++|++|.+.......... .....+.+|+.+....... .+ ...+..+..
T Consensus 614 l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~-~~-~e~l~~~~~ 691 (889)
T KOG4658|consen 614 LGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV-LL-LEDLLGMTR 691 (889)
T ss_pred HHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh-Hh-HhhhhhhHH
Confidence 8888888888888877677777767778888888887654221111 1112224444444422211 00 011112222
Q ss_pred ccccccC---CCCcccccCCCCCCCCCCCcccccEEECCCCCCcccc-cc-----ccC-CCCCceeeccccccccccC--
Q 047161 594 FSLMQKG---SSDSMALMLPSLSGLCSLTELNLKKLNLRRNNFVSLR-GT-----INH-LPKFKHLKLDDCKRLRSLS-- 661 (720)
Q Consensus 594 l~~l~l~---~~~~~~~~~~~l~~l~~L~~L~L~~L~Ls~n~l~~lp-~~-----i~~-l~~L~~L~L~~c~~L~~lp-- 661 (720)
+...... ...........+..+.+| +.|.+.++.+.+.. .+ ... ++++..+.+.+|..++.+.
T Consensus 692 L~~~~~~l~~~~~~~~~~~~~~~~l~~L-----~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~ 766 (889)
T KOG4658|consen 692 LRSLLQSLSIEGCSKRTLISSLGSLGNL-----EELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWL 766 (889)
T ss_pred HHHHhHhhhhcccccceeecccccccCc-----ceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccchh
Confidence 2111100 111112223334555555 44444444443211 11 111 4456666666666555554
Q ss_pred CcccccceEeeecCcccccchhhccC
Q 047161 662 ELPSDIKKVRVHGCTSLATISDALRS 687 (720)
Q Consensus 662 ~lp~~L~~L~l~~c~~L~~lp~~~~~ 687 (720)
.+|++|+.|.+..|..++.+.+....
T Consensus 767 ~f~~~L~~l~l~~~~~~e~~i~~~k~ 792 (889)
T KOG4658|consen 767 LFAPHLTSLSLVSCRLLEDIIPKLKA 792 (889)
T ss_pred hccCcccEEEEecccccccCCCHHHH
Confidence 35677888888887777666543333
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=99.97 E-value=3.6e-31 Score=274.17 Aligned_cols=239 Identities=31% Similarity=0.475 Sum_probs=186.2
Q ss_pred cchhHHHHHHhhhccCCCeEEEEEecCCCc-------------------------cccchhcHHHHHHHHHHhhhhccc-
Q 047161 133 MNSRLKKLRLLLDAESRDVRMIGICGMGGV-------------------------ELSEKDGLIALQKQLLSKTLMEID- 186 (720)
Q Consensus 133 ~~~~~~~i~~~L~~~~~~~~vi~I~G~gGi-------------------------~vs~~~~~~~~~~~il~~~~~~~~- 186 (720)
||.++++|.+.|....++.++|+|+||||+ .++...+...+.++|+.++.....
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~ 80 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSS 80 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-ST
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccc
Confidence 688999999999876689999999999999 234445557788888888433311
Q ss_pred c-eeccchhhHHHHHHHHhcCCeEEEEecCCcHHHHHHHhccCCCCCCCCeEEEEcCChhhhhhccc-cceEecCCCCHH
Q 047161 187 I-EIRNDFDGIKMIKRELRRRNVLVVIDDAVHIRQLNRLAGKHSWFGSGSRIIIPTRDEHLLRTLRV-DGVYKVEKLDDD 264 (720)
Q Consensus 187 ~-~~~~~~~~~~~l~~~l~~kr~LlVLDdv~~~~~~~~l~~~~~~~~~gsrIivTTR~~~v~~~~~~-~~~~~l~~L~~~ 264 (720)
. ...+.......+++.|+++++||||||||+..+|+.+...++.++.||+||||||+..|+..++. ...|++++|+.+
T Consensus 81 ~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~L~~~ 160 (287)
T PF00931_consen 81 ISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEPLSEE 160 (287)
T ss_dssp SSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS--HH
T ss_pred cccccccccccccchhhhccccceeeeeeecccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 1 33566678899999999999999999999999999999888888889999999999999988765 679999999999
Q ss_pred HHHHHHHHHhcCCC--CCchHHHHHHHHHHHhCCCchHHHHhhhhccCC-CHHHHHHHHhhhhcC------CchhHHHHH
Q 047161 265 EALELFNKRAFDGQ--PSKDYVELIKRIVKYADGLPFALETLGSVLFGR-SVDGWRSTLERLNKH------SADEILDVL 335 (720)
Q Consensus 265 ~s~~Lf~~~af~~~--~~~~~~~~~~~i~~~c~glPLai~~~g~~l~~k-~~~~W~~~l~~l~~~------~~~~il~~L 335 (720)
||++||.+.++... ..+...+.+++|+++|+|+|||++++|++|+.+ +..+|+++++++... ....+..++
T Consensus 161 ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~l 240 (287)
T PF00931_consen 161 EALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRSVFSAL 240 (287)
T ss_dssp HHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999998763 445567889999999999999999999999653 678999999876543 247799999
Q ss_pred HhhhcCCchh----hhhhhcCCCCCC----CccccchhhhhHHH
Q 047161 336 EISFNGLKGR----IEIMRKSPEEPG----KCSRLWKVADVSHV 371 (720)
Q Consensus 336 ~lSyn~L~~~----~~~~~~~p~~~~----~l~~Lw~~~~~~~~ 371 (720)
.+||+.|+.. +.+++.||.+.. .++++|.+++++..
T Consensus 241 ~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~ 284 (287)
T PF00931_consen 241 ELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISS 284 (287)
T ss_dssp HHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC-
T ss_pred eechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCcc
Confidence 9999999987 789999998754 89999999998643
No 4
>PLN03194 putative disease resistance protein; Provisional
Probab=99.94 E-value=2.4e-27 Score=214.80 Aligned_cols=107 Identities=24% Similarity=0.380 Sum_probs=97.8
Q ss_pred CceEeecCCCCCCCCcccHHHHHHHHhccceeEEeccCcccchhhhhhhccc---------------Ccccccc-cchHH
Q 047161 1 GVKIFEDHKELERGKAVSPGLFKAIEESRFSVVVFSRNYAYSTWCLDELAKI---------------PTVVRKQ-TRSFH 64 (720)
Q Consensus 1 gi~~f~d~~~l~~g~~~~~~l~~ai~~s~~~ivv~S~~ya~s~wcl~el~~i---------------p~~vr~~-~~~~~ 64 (720)
||+||+|++++++|+.|.++|.+||++|+++|||||++||+|+|||+||++| |+|||+| .|.
T Consensus 54 GI~vF~D~~el~~G~~i~~~L~~AIeeSri~IvVfS~~Ya~S~WCLdEL~~I~e~~~~ViPIFY~VdPsdVr~q~~~~-- 131 (187)
T PLN03194 54 NLRPFLDNKNMKPGDKLFDKINSAIRNCKVGVAVFSPRYCESYFCLHELALIMESKKRVIPIFCDVKPSQLRVVDNGT-- 131 (187)
T ss_pred CCEEEEcCccccCCCcHHHHHHHHHHhCeEEEEEECCCcccchhHHHHHHHHHHcCCEEEEEEecCCHHHhhccccCC--
Confidence 8999999999999999999999999999999999999999999999999999 9999997 433
Q ss_pred HHHHHHHHHhhhChHHHHHHHHHHHHhccCCccccc--ChhHHHHHHHHHHhhhhccC
Q 047161 65 EAFAKHEEAFRESTEKVQNWRHALTEVANPSGWHLK--DRHEVEFIQEIVKEISRKKG 120 (720)
Q Consensus 65 ~~~~~~~~~~~~~~~~v~~w~~~l~~~~~~~g~~~~--~~~e~~~i~~i~~~i~~~~~ 120 (720)
.+.++|++||+||++||+++|+++. +++|+++|++|++.|.+++.
T Consensus 132 -----------~~~e~v~~Wr~AL~~va~l~G~~~~~~~~~e~e~i~~iv~~v~k~l~ 178 (187)
T PLN03194 132 -----------CPDEEIRRFNWALEEAKYTVGLTFDSLKGNWSEVVTMASDAVIKNLI 178 (187)
T ss_pred -----------CCHHHHHHHHHHHHHHhccccccCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 2357899999999999999998775 48899999999999987753
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.89 E-value=1.2e-23 Score=254.21 Aligned_cols=348 Identities=19% Similarity=0.252 Sum_probs=199.6
Q ss_pred HHHHHhhhcCCchhhhhhhcCCCCCCCccccchhhhhHHHHhcC--cchhccCCcceEEEecccc----CCcccCccccc
Q 047161 332 LDVLEISFNGLKGRIEIMRKSPEEPGKCSRLWKVADVSHVLRRN--TAFLKMTNLRLLKIHNLQL----PAGLESLSDEL 405 (720)
Q Consensus 332 l~~L~lSyn~L~~~~~~~~~~p~~~~~l~~Lw~~~~~~~~~~~~--~~~~~l~~L~~L~l~~~~l----~~~~~~l~~~l 405 (720)
++.|++++|.+.+.. |..++.+.+|..++...+.+.+. ..+.++++|++|++++|.+ |..+..+ ..+
T Consensus 142 L~~L~Ls~n~~~~~~------p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l-~~L 214 (968)
T PLN00113 142 LETLDLSNNMLSGEI------PNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQM-KSL 214 (968)
T ss_pred CCEEECcCCcccccC------ChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCc-CCc
Confidence 455666666665443 55566666666665555544322 2566777777777776654 2333333 346
Q ss_pred eEEEecCCCCC-CCCCCCC-CCcceEeeCCCCchhHHhhhccCccccCCCCCCCCceeeecCCCCC-------CCCCCCC
Q 047161 406 RLLQWHGYPLK-SLPSSME-MDKTLECNMCYRRIEQFWKGIKNLIRTPDFTGAPNLEELILDGCKR-------LQNCTSL 476 (720)
Q Consensus 406 ~~L~~~~~~~~-~lp~~~~-~~~l~~L~l~~~~i~~l~~~~~~l~~~~~~~~l~~L~~L~L~~~~~-------l~~~~~L 476 (720)
+.|++++|.+. .+|..+. ..+++.|++.+|++... .+..++.+++|++|++++|.. +.++++|
T Consensus 215 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~--------~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 286 (968)
T PLN00113 215 KWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGP--------IPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKL 286 (968)
T ss_pred cEEECcCCccCCcCChhHhcCCCCCEEECcCceeccc--------cChhHhCCCCCCEEECcCCeeeccCchhHhhccCc
Confidence 77777776665 4555443 45666777766655321 122356666777777766641 1222233
Q ss_pred ccc--CccchhhhHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCCCcccCcCcCCCCCCCEEeccCc
Q 047161 477 TTL--PREIATESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMPESLGQMESLEELDVSGT 554 (720)
Q Consensus 477 ~~l--p~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~L~~n 554 (720)
+.+ ..+...+.+|..+..+++|++|++++|.+.+.+|..++++++|++|++++|.+.+.+|..++.+++|+.|++++|
T Consensus 287 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n 366 (968)
T PLN00113 287 ISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTN 366 (968)
T ss_pred CEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCC
Confidence 322 112222334444666666777777666666666666666677777777766666666666666677777777777
Q ss_pred ccccCCccccCCcCCceEEEeecCCCCCCCCCcccccccccccccCCCCcccccCCCCCCCCCCCcccccEEECCCCCCc
Q 047161 555 VIRQPVPSIFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSLSGLCSLTELNLKKLNLRRNNFV 634 (720)
Q Consensus 555 ~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~L~Ls~n~l~ 634 (720)
.+.+..|..+..+++|+.|++.+|.+.+..+..+..+..++.+.+..+......+..+..+++| +.|++++|.+.
T Consensus 367 ~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L-----~~L~Ls~N~l~ 441 (968)
T PLN00113 367 NLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLV-----YFLDISNNNLQ 441 (968)
T ss_pred eeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCC-----CEEECcCCccc
Confidence 6665544444444666777776666666666666666677777776666554444445666655 44555555554
Q ss_pred c-ccccccCCCCCceeeccccccccccCCc--------------------------ccccceEeeecCcccccchhhccC
Q 047161 635 S-LRGTINHLPKFKHLKLDDCKRLRSLSEL--------------------------PSDIKKVRVHGCTSLATISDALRS 687 (720)
Q Consensus 635 ~-lp~~i~~l~~L~~L~L~~c~~L~~lp~l--------------------------p~~L~~L~l~~c~~L~~lp~~~~~ 687 (720)
. +|..+..+++|+.|++++|.....+|.. .++|+.|++++|.....+|..+.+
T Consensus 442 ~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 521 (968)
T PLN00113 442 GRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSS 521 (968)
T ss_pred CccChhhccCCCCcEEECcCceeeeecCcccccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcC
Confidence 2 3334444555555555555433222221 134666666666666666766777
Q ss_pred chhHhhhhhhcc
Q 047161 688 CNSATSRIFCIN 699 (720)
Q Consensus 688 ~~~L~~l~~~~n 699 (720)
+++|+.|++++|
T Consensus 522 l~~L~~L~Ls~N 533 (968)
T PLN00113 522 CKKLVSLDLSHN 533 (968)
T ss_pred ccCCCEEECCCC
Confidence 777777666544
No 6
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.89 E-value=1.4e-23 Score=253.75 Aligned_cols=207 Identities=17% Similarity=0.146 Sum_probs=106.0
Q ss_pred hccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCCCcccCcCcCCCCCCCEEeccCcccccCCccccCCcCCce
Q 047161 492 IELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMPESLGQMESLEELDVSGTVIRQPVPSIFFPSRILK 571 (720)
Q Consensus 492 i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~ 571 (720)
++.+++|++|++++|.+.+.+|..++++++|++|++++|.+.+.+|..+.++++|++|++++|.+.+.+|..+..+++|+
T Consensus 232 l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 311 (968)
T PLN00113 232 IGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLE 311 (968)
T ss_pred HhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCc
Confidence 45555555555555554445555555555555555555544445555555555555555555555544444333335555
Q ss_pred EEEeecCCCCCCCCCcccccccccccccCCCCcccccCCCCCCCCCCCccc-------------------ccEEECCCCC
Q 047161 572 VYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSLSGLCSLTELN-------------------LKKLNLRRNN 632 (720)
Q Consensus 572 ~L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~-------------------L~~L~Ls~n~ 632 (720)
.|++.+|.+.+..+..+..+..|+.+.+..+......+..++.+++|+.|+ |+.|++++|.
T Consensus 312 ~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~ 391 (968)
T PLN00113 312 ILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNS 391 (968)
T ss_pred EEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCE
Confidence 555555555444444444555555555544443332222344444432221 1445555555
Q ss_pred Cc-cccccccCCCCCceeeccccccccccCCc---ccccceEeeecCcccccchhhccCchhHhhhhhhc
Q 047161 633 FV-SLRGTINHLPKFKHLKLDDCKRLRSLSEL---PSDIKKVRVHGCTSLATISDALRSCNSATSRIFCI 698 (720)
Q Consensus 633 l~-~lp~~i~~l~~L~~L~L~~c~~L~~lp~l---p~~L~~L~l~~c~~L~~lp~~~~~~~~L~~l~~~~ 698 (720)
+. .+|.++..+++|+.|++++|.....+|.. .++|+.|++++|.....+|..+..+++|+.|++..
T Consensus 392 l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~ 461 (968)
T PLN00113 392 LEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLAR 461 (968)
T ss_pred ecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcC
Confidence 54 44555666666666666666433333321 13466666666665555666666666666655543
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.89 E-value=1.4e-24 Score=224.03 Aligned_cols=339 Identities=23% Similarity=0.269 Sum_probs=221.6
Q ss_pred HHHHhhhcCCchhhhhhhcCCCCCCCccccchhhhhHHHHhcCcchhccCC-cceEEEeccccCC----cccCccccceE
Q 047161 333 DVLEISFNGLKGRIEIMRKSPEEPGKCSRLWKVADVSHVLRRNTAFLKMTN-LRLLKIHNLQLPA----GLESLSDELRL 407 (720)
Q Consensus 333 ~~L~lSyn~L~~~~~~~~~~p~~~~~l~~Lw~~~~~~~~~~~~~~~~~l~~-L~~L~l~~~~l~~----~~~~l~~~l~~ 407 (720)
+.|++|||.|.... +..+.++..|.....-.|.+...+.|+.... ++.|++.+|.++. .+..++ .++.
T Consensus 81 ~~LdlsnNkl~~id------~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~-alrs 153 (873)
T KOG4194|consen 81 QTLDLSNNKLSHID------FEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALP-ALRS 153 (873)
T ss_pred eeeeccccccccCc------HHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHh-hhhh
Confidence 56999999998775 4556678888888888888888888877665 9999999998854 233333 4899
Q ss_pred EEecCCCCCCCCCC-CC-CCcceEeeCCCCchhHHhhhccCccccCCCCCCCCceeeecCCCCCCCCCCCCcccCccchh
Q 047161 408 LQWHGYPLKSLPSS-ME-MDKTLECNMCYRRIEQFWKGIKNLIRTPDFTGAPNLEELILDGCKRLQNCTSLTTLPREIAT 485 (720)
Q Consensus 408 L~~~~~~~~~lp~~-~~-~~~l~~L~l~~~~i~~l~~~~~~l~~~~~~~~l~~L~~L~L~~~~~l~~~~~L~~lp~~~~~ 485 (720)
++++.|.+.++|.. |. ..++.+|+++.|.|..+..+. |.++.+|.+|.|+.|. ++.+|...
T Consensus 154 lDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~--------F~~lnsL~tlkLsrNr-------ittLp~r~-- 216 (873)
T KOG4194|consen 154 LDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGH--------FDSLNSLLTLKLSRNR-------ITTLPQRS-- 216 (873)
T ss_pred hhhhhchhhcccCCCCCCCCCceEEeecccccccccccc--------ccccchheeeecccCc-------ccccCHHH--
Confidence 99999999988753 43 378999999999998876553 7788888888888887 56666543
Q ss_pred hhHHHHhccCCCCcEEeccCCCCCccc-CCCCCCCCCCCE------------------------EeccCCCCCcccCcCc
Q 047161 486 ESLQKLIELLTGLVFLNLNDCKILVRL-PSTINGWKSLRT------------------------VNLSRCSKLENMPESL 540 (720)
Q Consensus 486 ~~l~~~i~~l~~L~~L~Ls~n~~~~~l-p~~i~~l~~L~~------------------------L~L~~~~~l~~lp~~~ 540 (720)
|.+|++|+.|+|..|.+ ... -..|.+|++|+. |+|..|+....--.++
T Consensus 217 ------Fk~L~~L~~LdLnrN~i-rive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~l 289 (873)
T KOG4194|consen 217 ------FKRLPKLESLDLNRNRI-RIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWL 289 (873)
T ss_pred ------hhhcchhhhhhccccce-eeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccc
Confidence 55566666666666652 222 223444444444 4444443333222334
Q ss_pred CCCCCCCEEeccCcccccCCccccCCcCCceEEEeecCCCCCCCCCcccccccccccccCCCCcccccCCCCCCCCCCCc
Q 047161 541 GQMESLEELDVSGTVIRQPVPSIFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSLSGLCSLTE 620 (720)
Q Consensus 541 ~~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~l~~l~~L~~ 620 (720)
.+|++|+.|++++|.|..+....+..+++|+.|++++|+++.+.+.+|..+..|+.|.++.|......-..|.++.+|
T Consensus 290 fgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL-- 367 (873)
T KOG4194|consen 290 FGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSL-- 367 (873)
T ss_pred cccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhh--
Confidence 455555555555555555544444444555555555555555555555555555555555554443333334444444
Q ss_pred ccccEEECCCCCCcc-c---cccccCCCCCceeeccccccccccCC-----cccccceEeeecCcccccchhhccCchhH
Q 047161 621 LNLKKLNLRRNNFVS-L---RGTINHLPKFKHLKLDDCKRLRSLSE-----LPSDIKKVRVHGCTSLATISDALRSCNSA 691 (720)
Q Consensus 621 L~L~~L~Ls~n~l~~-l---p~~i~~l~~L~~L~L~~c~~L~~lp~-----lp~~L~~L~l~~c~~L~~lp~~~~~~~~L 691 (720)
+.|||++|.+.- + ...+..|++|+.|.+.+| +++++|. + +.|+.|++.++.--..=|+.|..+ .|
T Consensus 368 ---~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gN-qlk~I~krAfsgl-~~LE~LdL~~NaiaSIq~nAFe~m-~L 441 (873)
T KOG4194|consen 368 ---HKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGN-QLKSIPKRAFSGL-EALEHLDLGDNAIASIQPNAFEPM-EL 441 (873)
T ss_pred ---hhhcCcCCeEEEEEecchhhhccchhhhheeecCc-eeeecchhhhccC-cccceecCCCCcceeecccccccc-hh
Confidence 677788887652 2 234577999999999998 5888874 3 569999999877555557788887 78
Q ss_pred hhhhhh-----cccc-hhHHHHHhh
Q 047161 692 TSRIFC-----INCP-KLILNWLQQ 710 (720)
Q Consensus 692 ~~l~~~-----~nc~-~l~~~w~~~ 710 (720)
++|.+. ++|. +.+..|+..
T Consensus 442 k~Lv~nSssflCDCql~Wl~qWl~~ 466 (873)
T KOG4194|consen 442 KELVMNSSSFLCDCQLKWLAQWLYR 466 (873)
T ss_pred hhhhhcccceEEeccHHHHHHHHHh
Confidence 776543 2354 456777753
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.84 E-value=4e-23 Score=214.43 Aligned_cols=310 Identities=22% Similarity=0.281 Sum_probs=182.6
Q ss_pred HHHHHhhhcCCchhhhhhhcCCCCCCCccccchhhhhHHHHhcC---cchhccCCcceEEEeccccC---CcccCccccc
Q 047161 332 LDVLEISFNGLKGRIEIMRKSPEEPGKCSRLWKVADVSHVLRRN---TAFLKMTNLRLLKIHNLQLP---AGLESLSDEL 405 (720)
Q Consensus 332 l~~L~lSyn~L~~~~~~~~~~p~~~~~l~~Lw~~~~~~~~~~~~---~~~~~l~~L~~L~l~~~~l~---~~~~~l~~~l 405 (720)
++.|.++.|.|...+ ..+..|.+|.....-.|.+.+. +.+..|..|..|+++.|++. ..+.+ .+..
T Consensus 57 LEHLs~~HN~L~~vh-------GELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~-AKn~ 128 (1255)
T KOG0444|consen 57 LEHLSMAHNQLISVH-------GELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEY-AKNS 128 (1255)
T ss_pred hhhhhhhhhhhHhhh-------hhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhhhcchhhhh-hcCc
Confidence 566677777775442 3344556666555555555443 24556777777777777663 33333 2446
Q ss_pred eEEEecCCCCCCCCCCC--CCCcceEeeCCCCchhHHhhhccCccccCCCCCCCCceeeecCCCCCCCCCCCCcccCccc
Q 047161 406 RLLQWHGYPLKSLPSSM--EMDKTLECNMCYRRIEQFWKGIKNLIRTPDFTGAPNLEELILDGCKRLQNCTSLTTLPREI 483 (720)
Q Consensus 406 ~~L~~~~~~~~~lp~~~--~~~~l~~L~l~~~~i~~l~~~~~~l~~~~~~~~l~~L~~L~L~~~~~l~~~~~L~~lp~~~ 483 (720)
-.|++++|.+.+||... ....+..|++++|++..+ +|...++.+|++|+|++|+-. .-.|+.+|.
T Consensus 129 iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~L---------PPQ~RRL~~LqtL~Ls~NPL~--hfQLrQLPs-- 195 (1255)
T KOG0444|consen 129 IVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEML---------PPQIRRLSMLQTLKLSNNPLN--HFQLRQLPS-- 195 (1255)
T ss_pred EEEEcccCccccCCchHHHhhHhHhhhccccchhhhc---------CHHHHHHhhhhhhhcCCChhh--HHHHhcCcc--
Confidence 66777777777777643 455666777777777665 455677788888888888611 001122222
Q ss_pred hhhhHHHHhccCCCCcEEeccCCCC-CcccCCCCCCCCCCCEEeccCCCCCcccCcCcCCCCCCCEEeccCcccccCCcc
Q 047161 484 ATESLQKLIELLTGLVFLNLNDCKI-LVRLPSTINGWKSLRTVNLSRCSKLENMPESLGQMESLEELDVSGTVIRQPVPS 562 (720)
Q Consensus 484 ~~~~l~~~i~~l~~L~~L~Ls~n~~-~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~L~~n~l~~~~~~ 562 (720)
+++|++|.+++++. ...+|.++..|.+|..+|+|.| .+..+|+.+.++++|+.|+|++|.++++...
T Consensus 196 -----------mtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N-~Lp~vPecly~l~~LrrLNLS~N~iteL~~~ 263 (1255)
T KOG0444|consen 196 -----------MTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSEN-NLPIVPECLYKLRNLRRLNLSGNKITELNMT 263 (1255)
T ss_pred -----------chhhhhhhcccccchhhcCCCchhhhhhhhhcccccc-CCCcchHHHhhhhhhheeccCcCceeeeecc
Confidence 45555666655432 2345666666666666666665 3555666666666666666666666665544
Q ss_pred ccCCcCCceEEEeecCCCCCCCCCcccccccccccccCCCCcccccCCC-CCCCCCCCcccccEEECCCCCCcccccccc
Q 047161 563 IFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPS-LSGLCSLTELNLKKLNLRRNNFVSLRGTIN 641 (720)
Q Consensus 563 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~-l~~l~~L~~L~L~~L~Ls~n~l~~lp~~i~ 641 (720)
...- .+|++|+++.|++..+ |...+.+..|..+...+|.+.-..+|+ ++.+..| +.+..++|.+.-+|..+.
T Consensus 264 ~~~W-~~lEtLNlSrNQLt~L-P~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~L-----evf~aanN~LElVPEglc 336 (1255)
T KOG0444|consen 264 EGEW-ENLETLNLSRNQLTVL-PDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQL-----EVFHAANNKLELVPEGLC 336 (1255)
T ss_pred HHHH-hhhhhhccccchhccc-hHHHhhhHHHHHHHhccCcccccCCccchhhhhhh-----HHHHhhccccccCchhhh
Confidence 4333 5666666666665543 345566666666666666655555555 6666655 444555666665666666
Q ss_pred CCCCCceeeccccccccccCC---cccccceEeeecCcccccch
Q 047161 642 HLPKFKHLKLDDCKRLRSLSE---LPSDIKKVRVHGCTSLATIS 682 (720)
Q Consensus 642 ~l~~L~~L~L~~c~~L~~lp~---lp~~L~~L~l~~c~~L~~lp 682 (720)
.++.|+.|.|++| .|.++|+ +-+.|+.|+++.+++|..-|
T Consensus 337 RC~kL~kL~L~~N-rLiTLPeaIHlL~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 337 RCVKLQKLKLDHN-RLITLPEAIHLLPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred hhHHHHHhccccc-ceeechhhhhhcCCcceeeccCCcCccCCC
Confidence 6666666666555 3445553 22446666666666665554
No 9
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.82 E-value=2.5e-21 Score=200.16 Aligned_cols=304 Identities=18% Similarity=0.221 Sum_probs=224.5
Q ss_pred hhhhHHHHhcCc--chhccCCcceEEEeccccCC--cccCccccceEEEecCCCCCCCCCCC--CCCcceEeeCCCCchh
Q 047161 365 VADVSHVLRRNT--AFLKMTNLRLLKIHNLQLPA--GLESLSDELRLLQWHGYPLKSLPSSM--EMDKTLECNMCYRRIE 438 (720)
Q Consensus 365 ~~~~~~~~~~~~--~~~~l~~L~~L~l~~~~l~~--~~~~l~~~l~~L~~~~~~~~~lp~~~--~~~~l~~L~l~~~~i~ 438 (720)
++...|.+.... .|.++.+|+.+++..|.+.. .+......+..|++.+|.+.++.+.- ....++.++++.|.+.
T Consensus 83 LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is 162 (873)
T KOG4194|consen 83 LDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLIS 162 (873)
T ss_pred eeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhh
Confidence 444555555443 67899999999999997632 23444566889999999988876432 3456788899998887
Q ss_pred HHhhhccCccccCCCCCCCCceeeecCCCCCCCCCCCCcccCccchhhhHHHHhccCCCCcEEeccCCCCCcccC-CCCC
Q 047161 439 QFWKGIKNLIRTPDFTGAPNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILVRLP-STIN 517 (720)
Q Consensus 439 ~l~~~~~~l~~~~~~~~l~~L~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp-~~i~ 517 (720)
.+. .|.|..-.++++|+|++|. ++.+.... |..+.+|..|.|++|++ ..+| .+|.
T Consensus 163 ~i~--------~~sfp~~~ni~~L~La~N~-------It~l~~~~--------F~~lnsL~tlkLsrNri-ttLp~r~Fk 218 (873)
T KOG4194|consen 163 EIP--------KPSFPAKVNIKKLNLASNR-------ITTLETGH--------FDSLNSLLTLKLSRNRI-TTLPQRSFK 218 (873)
T ss_pred ccc--------CCCCCCCCCceEEeecccc-------cccccccc--------ccccchheeeecccCcc-cccCHHHhh
Confidence 763 3568888899999999998 56665443 77888999999999995 5555 4566
Q ss_pred CCCCCCEEeccCCCCCcccCcCcCCCCCCCEEeccCcccccCCccccCCcCCceEEEeecCCCCCCCCCccccccccccc
Q 047161 518 GWKSLRTVNLSRCSKLENMPESLGQMESLEELDVSGTVIRQPVPSIFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLM 597 (720)
Q Consensus 518 ~l~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~l 597 (720)
+|+.|+.|+|..|.+-..---.|..|++|+.|.+..|.+..+..+.|..+.++++|++..|++..+....+.++..|+.|
T Consensus 219 ~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L 298 (873)
T KOG4194|consen 219 RLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQL 298 (873)
T ss_pred hcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhh
Confidence 69999999999986432213457889999999999999998888888888999999999999988888888999999999
Q ss_pred ccCCCCcccccCCCCCCCCCCCcccccEEECCCCCCcccc-cccc------------------------CCCCCceeecc
Q 047161 598 QKGSSDSMALMLPSLSGLCSLTELNLKKLNLRRNNFVSLR-GTIN------------------------HLPKFKHLKLD 652 (720)
Q Consensus 598 ~l~~~~~~~~~~~~l~~l~~L~~L~L~~L~Ls~n~l~~lp-~~i~------------------------~l~~L~~L~L~ 652 (720)
+++.|.+....+.+++-+++| +.|+|++|+++.++ ..+. .+++|+.|+|+
T Consensus 299 ~lS~NaI~rih~d~WsftqkL-----~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr 373 (873)
T KOG4194|consen 299 DLSYNAIQRIHIDSWSFTQKL-----KELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLR 373 (873)
T ss_pred ccchhhhheeecchhhhcccc-----eeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCc
Confidence 999888888888888888877 44555555555554 3334 44455555555
Q ss_pred ccccccccC-------CcccccceEeeecCcccccch-hhccCchhHhhhhhhcc
Q 047161 653 DCKRLRSLS-------ELPSDIKKVRVHGCTSLATIS-DALRSCNSATSRIFCIN 699 (720)
Q Consensus 653 ~c~~L~~lp-------~lp~~L~~L~l~~c~~L~~lp-~~~~~~~~L~~l~~~~n 699 (720)
+|.---.+. .+ ++|+.|.+.| .+++++| ..|.+++.|+.|++-.|
T Consensus 374 ~N~ls~~IEDaa~~f~gl-~~LrkL~l~g-Nqlk~I~krAfsgl~~LE~LdL~~N 426 (873)
T KOG4194|consen 374 SNELSWCIEDAAVAFNGL-PSLRKLRLTG-NQLKSIPKRAFSGLEALEHLDLGDN 426 (873)
T ss_pred CCeEEEEEecchhhhccc-hhhhheeecC-ceeeecchhhhccCcccceecCCCC
Confidence 543111111 12 5688888887 5588888 57888888888877655
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.79 E-value=2.9e-21 Score=200.74 Aligned_cols=239 Identities=20% Similarity=0.308 Sum_probs=165.2
Q ss_pred ceEEEeccccC-----CcccCccccceEEEecCCCCCCCCCCCC-CCcceEeeCCCCchhHHhhhccCccccCCCCCCCC
Q 047161 385 RLLKIHNLQLP-----AGLESLSDELRLLQWHGYPLKSLPSSME-MDKTLECNMCYRRIEQFWKGIKNLIRTPDFTGAPN 458 (720)
Q Consensus 385 ~~L~l~~~~l~-----~~~~~l~~~l~~L~~~~~~~~~lp~~~~-~~~l~~L~l~~~~i~~l~~~~~~l~~~~~~~~l~~ 458 (720)
+-.++++|.+. .....+ ..+++|.+....+..+|.... ..++.+|.+.+|++..+.. .++.++.
T Consensus 10 rGvDfsgNDFsg~~FP~~v~qM-t~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhG---------ELs~Lp~ 79 (1255)
T KOG0444|consen 10 RGVDFSGNDFSGDRFPHDVEQM-TQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHG---------ELSDLPR 79 (1255)
T ss_pred ecccccCCcCCCCcCchhHHHh-hheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhh---------hhccchh
Confidence 44455555443 333333 347778888777888887654 4566777777777766543 2567777
Q ss_pred ceeeecCCCCCCCCCCCCcccCccchhhhHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCCCcccCc
Q 047161 459 LEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMPE 538 (720)
Q Consensus 459 L~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~ 538 (720)
||.+++..|. +.+ .-+|.. |.++.-|..||||+|+ +.+.|..+..-+++-+|+||+|+ +..+|.
T Consensus 80 LRsv~~R~N~-LKn----sGiP~d---------iF~l~dLt~lDLShNq-L~EvP~~LE~AKn~iVLNLS~N~-IetIPn 143 (1255)
T KOG0444|consen 80 LRSVIVRDNN-LKN----SGIPTD---------IFRLKDLTILDLSHNQ-LREVPTNLEYAKNSIVLNLSYNN-IETIPN 143 (1255)
T ss_pred hHHHhhhccc-ccc----CCCCch---------hcccccceeeecchhh-hhhcchhhhhhcCcEEEEcccCc-cccCCc
Confidence 8888887776 110 235655 7778888888888887 67788888888888888888874 566775
Q ss_pred C-cCCCCCCCEEeccCcccccCCccccCCcCCceEEEeecCCCCCCCCCcccccccccccccCCCCcccccCC-CCCCCC
Q 047161 539 S-LGQMESLEELDVSGTVIRQPVPSIFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLP-SLSGLC 616 (720)
Q Consensus 539 ~-~~~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~-~l~~l~ 616 (720)
. +-+|+.|-.|||++|++..+||++-.+ ..|++|.+++|.+....-..+..+.+|+.+.+++.+..-..+| ++.++.
T Consensus 144 ~lfinLtDLLfLDLS~NrLe~LPPQ~RRL-~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~ 222 (1255)
T KOG0444|consen 144 SLFINLTDLLFLDLSNNRLEMLPPQIRRL-SMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLH 222 (1255)
T ss_pred hHHHhhHhHhhhccccchhhhcCHHHHHH-hhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhh
Confidence 4 557888888888888888888887776 7888888888877776666667777777777776655444444 366666
Q ss_pred CCCcccccEEECCCCCCccccccccCCCCCceeeccccc
Q 047161 617 SLTELNLKKLNLRRNNFVSLRGTINHLPKFKHLKLDDCK 655 (720)
Q Consensus 617 ~L~~L~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~ 655 (720)
+| ..+|+|.|++..+|.++-++++|+.|+|++|+
T Consensus 223 NL-----~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~ 256 (1255)
T KOG0444|consen 223 NL-----RDVDLSENNLPIVPECLYKLRNLRRLNLSGNK 256 (1255)
T ss_pred hh-----hhccccccCCCcchHHHhhhhhhheeccCcCc
Confidence 55 56666777776677776667777777777664
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.74 E-value=1.2e-20 Score=187.15 Aligned_cols=325 Identities=22% Similarity=0.294 Sum_probs=207.4
Q ss_pred HHHHHhhhcCCchhhhhhhcCCCCCCCccccchhhhhHHHHhcC-cchhccCCcceEEEeccccC---CcccCccccceE
Q 047161 332 LDVLEISFNGLKGRIEIMRKSPEEPGKCSRLWKVADVSHVLRRN-TAFLKMTNLRLLKIHNLQLP---AGLESLSDELRL 407 (720)
Q Consensus 332 l~~L~lSyn~L~~~~~~~~~~p~~~~~l~~Lw~~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~l~---~~~~~l~~~l~~ 407 (720)
+..++.|||.+... |.+++.+..+-..++..|.+... ..+..+.++..+++.+|.+. +..-. .+.+++
T Consensus 116 l~~l~~s~n~~~el-------~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ 187 (565)
T KOG0472|consen 116 LVKLDCSSNELKEL-------PDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIA-MKRLKH 187 (565)
T ss_pred hhhhhccccceeec-------CchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchhhCCHHHHH-HHHHHh
Confidence 45667777777654 66666666666666666555543 25566666666777666552 22222 345677
Q ss_pred EEecCCCCCCCCCCCC-CCcceEeeCCCCchhHHhhhccCccccCCCCCCCCceeeecCCCCCCCCCCCCcccCccchhh
Q 047161 408 LQWHGYPLKSLPSSME-MDKTLECNMCYRRIEQFWKGIKNLIRTPDFTGAPNLEELILDGCKRLQNCTSLTTLPREIATE 486 (720)
Q Consensus 408 L~~~~~~~~~lp~~~~-~~~l~~L~l~~~~i~~l~~~~~~l~~~~~~~~l~~L~~L~L~~~~~l~~~~~L~~lp~~~~~~ 486 (720)
++...|.++.+|..++ ..++..|++..|++.. .|.|.+|..|..|+++.|. ++.+|.+.
T Consensus 188 ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~----------lPef~gcs~L~Elh~g~N~-------i~~lpae~--- 247 (565)
T KOG0472|consen 188 LDCNSNLLETLPPELGGLESLELLYLRRNKIRF----------LPEFPGCSLLKELHVGENQ-------IEMLPAEH--- 247 (565)
T ss_pred cccchhhhhcCChhhcchhhhHHHHhhhccccc----------CCCCCccHHHHHHHhcccH-------HHhhHHHH---
Confidence 7777777777777664 3445555566665543 4677788888888877776 56666653
Q ss_pred hHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCCCcccCcCcCCCCCCCEEeccCcccccCCccccCC
Q 047161 487 SLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMPESLGQMESLEELDVSGTVIRQPVPSIFFP 566 (720)
Q Consensus 487 ~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~L~~n~l~~~~~~~~~~ 566 (720)
..++++|.+|||++|+ ++++|..++.+.+|.+||+|+|. +..+|.++|+| .|+.|-+.+|.+..+-.++...
T Consensus 248 -----~~~L~~l~vLDLRdNk-lke~Pde~clLrsL~rLDlSNN~-is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~ 319 (565)
T KOG0472|consen 248 -----LKHLNSLLVLDLRDNK-LKEVPDEICLLRSLERLDLSNND-ISSLPYSLGNL-HLKFLALEGNPLRTIRREIISK 319 (565)
T ss_pred -----hcccccceeeeccccc-cccCchHHHHhhhhhhhcccCCc-cccCCcccccc-eeeehhhcCCchHHHHHHHHcc
Confidence 4489999999999998 78999999999999999999985 66789999999 8999999999877654443322
Q ss_pred cC--CceEEEe--ecCCCCC----------CCCCc---ccccccccccccCCCCcccc----------------------
Q 047161 567 SR--ILKVYLF--VDTRDHR----------TSSSS---WHLWFPFSLMQKGSSDSMAL---------------------- 607 (720)
Q Consensus 567 ~~--~L~~L~l--~~~~~~~----------~~~~~---~~~l~~l~~l~l~~~~~~~~---------------------- 607 (720)
.+ -|++|.- .+-+.+. .++.. ...+...+.+..+..+....
T Consensus 320 gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNq 399 (565)
T KOG0472|consen 320 GTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQ 399 (565)
T ss_pred cHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccch
Confidence 11 1222110 0000000 01111 12233333333332222110
Q ss_pred ---------------------------cCCCCCCCCCCCcccccEEECCCCCCccccccccCCCCCceeecccccccccc
Q 047161 608 ---------------------------MLPSLSGLCSLTELNLKKLNLRRNNFVSLRGTINHLPKFKHLKLDDCKRLRSL 660 (720)
Q Consensus 608 ---------------------------~~~~l~~l~~L~~L~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~l 660 (720)
....++.++ +|..|+|++|-+..+|..++.+..|+.|+|+.|+ ...+
T Consensus 400 L~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~-----kLt~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~Nr-Fr~l 473 (565)
T KOG0472|consen 400 LCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQ-----KLTFLDLSNNLLNDLPEEMGSLVRLQTLNLSFNR-FRML 473 (565)
T ss_pred HhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhh-----cceeeecccchhhhcchhhhhhhhhheecccccc-cccc
Confidence 000122222 3478899999999999999999999999999884 3333
Q ss_pred CC--------------------cc-------cccceEeeecCcccccchhhccCchhHhhhhhhcc
Q 047161 661 SE--------------------LP-------SDIKKVRVHGCTSLATISDALRSCNSATSRIFCIN 699 (720)
Q Consensus 661 p~--------------------lp-------~~L~~L~l~~c~~L~~lp~~~~~~~~L~~l~~~~n 699 (720)
|. ++ .+|..|++.+ ..+..+|..+++|++|+.|.+..|
T Consensus 474 P~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~n-Ndlq~IPp~LgnmtnL~hLeL~gN 538 (565)
T KOG0472|consen 474 PECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQN-NDLQQIPPILGNMTNLRHLELDGN 538 (565)
T ss_pred hHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCC-CchhhCChhhccccceeEEEecCC
Confidence 31 22 3577777766 558889999999999998777655
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.73 E-value=2.4e-19 Score=178.01 Aligned_cols=166 Identities=25% Similarity=0.273 Sum_probs=131.4
Q ss_pred HHHHHhhhcCCchhhhhhhcCCCCCCCccccchhhhhHHHHhcCc-chhccCCcceEEEecccc---CCcccCccccceE
Q 047161 332 LDVLEISFNGLKGRIEIMRKSPEEPGKCSRLWKVADVSHVLRRNT-AFLKMTNLRLLKIHNLQL---PAGLESLSDELRL 407 (720)
Q Consensus 332 l~~L~lSyn~L~~~~~~~~~~p~~~~~l~~Lw~~~~~~~~~~~~~-~~~~l~~L~~L~l~~~~l---~~~~~~l~~~l~~ 407 (720)
+..++...|++... |.++..+.++-.+....+.+.... ..-.|+.|+.++...|.+ |+.+..+. .+..
T Consensus 139 l~dl~~~~N~i~sl-------p~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~-~L~~ 210 (565)
T KOG0472|consen 139 LEDLDATNNQISSL-------PEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPPELGGLE-SLEL 210 (565)
T ss_pred hhhhhccccccccC-------chHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhhcCChhhcchh-hhHH
Confidence 45556666666655 788888888877777766666543 334499999999988865 66666553 4778
Q ss_pred EEecCCCCCCCCCCCCCCcceEeeCCCCchhHHhhhccCccccCCCCCCCCceeeecCCCCCCCCCCCCcccCccchhhh
Q 047161 408 LQWHGYPLKSLPSSMEMDKTLECNMCYRRIEQFWKGIKNLIRTPDFTGAPNLEELILDGCKRLQNCTSLTTLPREIATES 487 (720)
Q Consensus 408 L~~~~~~~~~lp~~~~~~~l~~L~l~~~~i~~l~~~~~~l~~~~~~~~l~~L~~L~L~~~~~l~~~~~L~~lp~~~~~~~ 487 (720)
|++..|.+..+|+.-+...+.+++...|+++.+.... ...+++|.+|||..|+ ++++|++
T Consensus 211 LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~--------~~~L~~l~vLDLRdNk-------lke~Pde----- 270 (565)
T KOG0472|consen 211 LYLRRNKIRFLPEFPGCSLLKELHVGENQIEMLPAEH--------LKHLNSLLVLDLRDNK-------LKEVPDE----- 270 (565)
T ss_pred HHhhhcccccCCCCCccHHHHHHHhcccHHHhhHHHH--------hcccccceeeeccccc-------cccCchH-----
Confidence 8999999999996667788888999988888775543 5688899999999998 7899998
Q ss_pred HHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCC
Q 047161 488 LQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCS 531 (720)
Q Consensus 488 l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~ 531 (720)
++.+.+|.+||+|+|. +..+|.++|++ +|+.|-+-||.
T Consensus 271 ----~clLrsL~rLDlSNN~-is~Lp~sLgnl-hL~~L~leGNP 308 (565)
T KOG0472|consen 271 ----ICLLRSLERLDLSNND-ISSLPYSLGNL-HLKFLALEGNP 308 (565)
T ss_pred ----HHHhhhhhhhcccCCc-cccCCcccccc-eeeehhhcCCc
Confidence 8889999999999998 67899999999 88888887774
No 13
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.72 E-value=9.4e-17 Score=194.78 Aligned_cols=269 Identities=24% Similarity=0.370 Sum_probs=142.9
Q ss_pred ccceEEEecCCCC-------CCCCCCCC--CCcceEeeCCCCchhHHhhhccCccccCCCCCCCCceeeecCCCCC----
Q 047161 403 DELRLLQWHGYPL-------KSLPSSME--MDKTLECNMCYRRIEQFWKGIKNLIRTPDFTGAPNLEELILDGCKR---- 469 (720)
Q Consensus 403 ~~l~~L~~~~~~~-------~~lp~~~~--~~~l~~L~l~~~~i~~l~~~~~~l~~~~~~~~l~~L~~L~L~~~~~---- 469 (720)
..+++|.+..+.. ..+|..+. +.+++.|.+.++.++.+... ..+.+|+.|++++|.-
T Consensus 558 ~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~----------f~~~~L~~L~L~~s~l~~L~ 627 (1153)
T PLN03210 558 RNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSN----------FRPENLVKLQMQGSKLEKLW 627 (1153)
T ss_pred ccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCc----------CCccCCcEEECcCccccccc
Confidence 4577777755432 13555443 34677777776665554322 2344555555555430
Q ss_pred --CCCCCC-----------CcccCccchhhhHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCCCccc
Q 047161 470 --LQNCTS-----------LTTLPREIATESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENM 536 (720)
Q Consensus 470 --l~~~~~-----------L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~l~~l 536 (720)
...+++ +..+|. ++.+++|+.|+|++|..+..+|.+++++++|++|++++|..++.+
T Consensus 628 ~~~~~l~~Lk~L~Ls~~~~l~~ip~----------ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~L 697 (1153)
T PLN03210 628 DGVHSLTGLRNIDLRGSKNLKEIPD----------LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEIL 697 (1153)
T ss_pred cccccCCCCCEEECCCCCCcCcCCc----------cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCcc
Confidence 000111 133332 455666666666666666666666666666666666666666666
Q ss_pred CcCcCCCCCCCEEeccCcccccCCccccCCcCCceEEEeecCCCCCCCCCcccccc------------------------
Q 047161 537 PESLGQMESLEELDVSGTVIRQPVPSIFFPSRILKVYLFVDTRDHRTSSSSWHLWF------------------------ 592 (720)
Q Consensus 537 p~~~~~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~------------------------ 592 (720)
|..+ ++++|+.|++++|...+..|.. .++|+.|++.+|.+..++... .+.
T Consensus 698 p~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~~lP~~~--~l~~L~~L~l~~~~~~~l~~~~~~l~~ 771 (1153)
T PLN03210 698 PTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIEEFPSNL--RLENLDELILCEMKSEKLWERVQPLTP 771 (1153)
T ss_pred CCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccccccccc--cccccccccccccchhhccccccccch
Confidence 6544 5666666666666543333322 255666666666554443221 112
Q ss_pred -------cccccccCCCCcccccCCCCCCCCCCCcccccEEECCCC-CCccccccccCCCCCceeeccccccccccCCcc
Q 047161 593 -------PFSLMQKGSSDSMALMLPSLSGLCSLTELNLKKLNLRRN-NFVSLRGTINHLPKFKHLKLDDCKRLRSLSELP 664 (720)
Q Consensus 593 -------~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~L~Ls~n-~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~lp 664 (720)
.|+.+.+..+......+.+++++++| +.|++++| .+..+|..+ ++++|+.|++++|..+..+|.++
T Consensus 772 ~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L-----~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~~ 845 (1153)
T PLN03210 772 LMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKL-----EHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDIS 845 (1153)
T ss_pred hhhhccccchheeCCCCCCccccChhhhCCCCC-----CEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccccc
Confidence 22223332222222222224444444 55666654 455666554 56677777777776666555433
Q ss_pred -----------------------cccceEeeecCcccccchhhccCchhHhhhhhhcccchhH
Q 047161 665 -----------------------SDIKKVRVHGCTSLATISDALRSCNSATSRIFCINCPKLI 704 (720)
Q Consensus 665 -----------------------~~L~~L~l~~c~~L~~lp~~~~~~~~L~~l~~~~nc~~l~ 704 (720)
++|+.|++.+|++|+.+|..+..+++|+.+.+ .+|+.+.
T Consensus 846 ~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l-~~C~~L~ 907 (1153)
T PLN03210 846 TNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDF-SDCGALT 907 (1153)
T ss_pred cccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeec-CCCcccc
Confidence 24555556666666666665556666665333 3676653
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.66 E-value=1.7e-18 Score=188.84 Aligned_cols=208 Identities=22% Similarity=0.272 Sum_probs=134.4
Q ss_pred hHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCCCcccCcCcCCCCCCCEEeccCcccccCCccccCC
Q 047161 487 SLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMPESLGQMESLEELDVSGTVIRQPVPSIFFP 566 (720)
Q Consensus 487 ~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~L~~n~l~~~~~~~~~~ 566 (720)
.+|++++.+.+|+.|+..+|. +..+|..+...++|+.|.+..| .+..+|...+.+++|++|+|..|.+..+|+..+.-
T Consensus 255 ~lp~wi~~~~nle~l~~n~N~-l~~lp~ri~~~~~L~~l~~~~n-el~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v 332 (1081)
T KOG0618|consen 255 NLPEWIGACANLEALNANHNR-LVALPLRISRITSLVSLSAAYN-ELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAV 332 (1081)
T ss_pred cchHHHHhcccceEecccchh-HHhhHHHHhhhhhHHHHHhhhh-hhhhCCCcccccceeeeeeehhccccccchHHHhh
Confidence 345557777777777777776 4677777777777777777776 46667777777888888888888887777755543
Q ss_pred cC-CceEEEeecCCCCCCCCCcccccccccccccCCCCcccccCCCCCCCCCCCcccc-------------------cEE
Q 047161 567 SR-ILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSLSGLCSLTELNL-------------------KKL 626 (720)
Q Consensus 567 ~~-~L~~L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~L-------------------~~L 626 (720)
+. +|+.|..+.|.+...+...-..+..++.+.+.+|.+.+..+|.+.+..+|+.|+| ++|
T Consensus 333 ~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL 412 (1081)
T KOG0618|consen 333 LNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEEL 412 (1081)
T ss_pred hhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHH
Confidence 22 2566666666665555444445566778888888888888888888888866643 556
Q ss_pred ECCCCCCccccccccCCCCCceeeccccccccccCCcc--cccceEeeecCcccccc--hhhccCchhHhhhhhhcc
Q 047161 627 NLRRNNFVSLRGTINHLPKFKHLKLDDCKRLRSLSELP--SDIKKVRVHGCTSLATI--SDALRSCNSATSRIFCIN 699 (720)
Q Consensus 627 ~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~lp--~~L~~L~l~~c~~L~~l--p~~~~~~~~L~~l~~~~n 699 (720)
+||||.++.+|..+.+++.|++|...+| .+..+|++. +.|+.++++ |..|+.+ |.... .++|+.|++..|
T Consensus 413 ~LSGNkL~~Lp~tva~~~~L~tL~ahsN-~l~~fPe~~~l~qL~~lDlS-~N~L~~~~l~~~~p-~p~LkyLdlSGN 486 (1081)
T KOG0618|consen 413 NLSGNKLTTLPDTVANLGRLHTLRAHSN-QLLSFPELAQLPQLKVLDLS-CNNLSEVTLPEALP-SPNLKYLDLSGN 486 (1081)
T ss_pred hcccchhhhhhHHHHhhhhhHHHhhcCC-ceeechhhhhcCcceEEecc-cchhhhhhhhhhCC-CcccceeeccCC
Confidence 6666666666666666666666655555 355555433 456666664 3444333 22222 256666666655
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.66 E-value=1.1e-15 Score=172.44 Aligned_cols=173 Identities=21% Similarity=0.170 Sum_probs=88.2
Q ss_pred CCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCCCcccCcCcCCCCCCCEEeccCcccccCCccccCCcCCceEEEee
Q 047161 497 GLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMPESLGQMESLEELDVSGTVIRQPVPSIFFPSRILKVYLFV 576 (720)
Q Consensus 497 ~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~ 576 (720)
+|+.|++++|. +..+|.. +++|++|++++|.+ ..+|... .+|+.|++++|.+.++|. ...+|+.|+++
T Consensus 283 ~L~~L~Ls~N~-Lt~LP~~---p~~L~~LdLS~N~L-~~Lp~lp---~~L~~L~Ls~N~L~~LP~----lp~~Lq~LdLS 350 (788)
T PRK15387 283 GLCKLWIFGNQ-LTSLPVL---PPGLQELSVSDNQL-ASLPALP---SELCKLWAYNNQLTSLPT----LPSGLQELSVS 350 (788)
T ss_pred hcCEEECcCCc-ccccccc---ccccceeECCCCcc-ccCCCCc---ccccccccccCccccccc----cccccceEecC
Confidence 34455555554 3344432 24455555555432 2333321 234445555555554432 11345555555
Q ss_pred cCCCCCCCCCcccccccccccccCCCCcccccCCCCCCCCCCCcccccEEECCCCCCccccccccCCCCCceeecccccc
Q 047161 577 DTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSLSGLCSLTELNLKKLNLRRNNFVSLRGTINHLPKFKHLKLDDCKR 656 (720)
Q Consensus 577 ~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~ 656 (720)
+|.+..++.. + ..+..+.+..|.+.. +|.+ .. +|+.|++++|.++.+|.. .++|+.|++++| .
T Consensus 351 ~N~Ls~LP~l-p---~~L~~L~Ls~N~L~~--LP~l--~~-----~L~~LdLs~N~Lt~LP~l---~s~L~~LdLS~N-~ 413 (788)
T PRK15387 351 DNQLASLPTL-P---SELYKLWAYNNRLTS--LPAL--PS-----GLKELIVSGNRLTSLPVL---PSELKELMVSGN-R 413 (788)
T ss_pred CCccCCCCCC-C---cccceehhhcccccc--Cccc--cc-----ccceEEecCCcccCCCCc---ccCCCEEEccCC-c
Confidence 5555443321 1 122333333332221 1211 11 236677777777776643 246777777777 3
Q ss_pred ccccCCcccccceEeeecCcccccchhhccCchhHhhhhhhcc
Q 047161 657 LRSLSELPSDIKKVRVHGCTSLATISDALRSCNSATSRIFCIN 699 (720)
Q Consensus 657 L~~lp~lp~~L~~L~l~~c~~L~~lp~~~~~~~~L~~l~~~~n 699 (720)
+..+|.+|.+|+.|+++++. ++++|..+.++++|..+++.+|
T Consensus 414 LssIP~l~~~L~~L~Ls~Nq-Lt~LP~sl~~L~~L~~LdLs~N 455 (788)
T PRK15387 414 LTSLPMLPSGLLSLSVYRNQ-LTRLPESLIHLSSETTVNLEGN 455 (788)
T ss_pred CCCCCcchhhhhhhhhccCc-ccccChHHhhccCCCeEECCCC
Confidence 66677766677777776643 6677777777777777666655
No 16
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.62 E-value=9.1e-16 Score=174.24 Aligned_cols=225 Identities=18% Similarity=0.246 Sum_probs=137.7
Q ss_pred CcceEEEeccccCCcccCccccceEEEecCCCCCCCCCCCCCCcceEeeCCCCchhHHhhhccCccccCCCCCCCCceee
Q 047161 383 NLRLLKIHNLQLPAGLESLSDELRLLQWHGYPLKSLPSSMEMDKTLECNMCYRRIEQFWKGIKNLIRTPDFTGAPNLEEL 462 (720)
Q Consensus 383 ~L~~L~l~~~~l~~~~~~l~~~l~~L~~~~~~~~~lp~~~~~~~l~~L~l~~~~i~~l~~~~~~l~~~~~~~~l~~L~~L 462 (720)
+...|+++++.+......++..++.|++++|.+..+|..+. .++..|++++|++..+... + .++|+.|
T Consensus 179 ~~~~L~L~~~~LtsLP~~Ip~~L~~L~Ls~N~LtsLP~~l~-~nL~~L~Ls~N~LtsLP~~---------l--~~~L~~L 246 (754)
T PRK15370 179 NKTELRLKILGLTTIPACIPEQITTLILDNNELKSLPENLQ-GNIKTLYANSNQLTSIPAT---------L--PDTIQEM 246 (754)
T ss_pred CceEEEeCCCCcCcCCcccccCCcEEEecCCCCCcCChhhc-cCCCEEECCCCccccCChh---------h--hccccEE
Confidence 34567777766654334456778889999999998887654 4777888887776544221 1 2368888
Q ss_pred ecCCCCCCCCCCCCcccCccchhhhHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCCCcccCcCcCC
Q 047161 463 ILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMPESLGQ 542 (720)
Q Consensus 463 ~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~ 542 (720)
+|++|. +..+|.. +. .+|++|++++|. +..+|..+. ++|++|++++|. +..+|..+.
T Consensus 247 ~Ls~N~-------L~~LP~~---------l~--s~L~~L~Ls~N~-L~~LP~~l~--~sL~~L~Ls~N~-Lt~LP~~lp- 303 (754)
T PRK15370 247 ELSINR-------ITELPER---------LP--SALQSLDLFHNK-ISCLPENLP--EELRYLSVYDNS-IRTLPAHLP- 303 (754)
T ss_pred ECcCCc-------cCcCChh---------Hh--CCCCEEECcCCc-cCccccccC--CCCcEEECCCCc-cccCcccch-
Confidence 888876 4566654 22 468888888777 456777664 578888888875 445665543
Q ss_pred CCCCCEEeccCcccccCCccccCCcCCceEEEeecCCCCCCCCCcccccccccccccCCCCcccccCCC-CCCCCCCCcc
Q 047161 543 MESLEELDVSGTVIRQPVPSIFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPS-LSGLCSLTEL 621 (720)
Q Consensus 543 L~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~-l~~l~~L~~L 621 (720)
++|+.|++++|.+..+|.... ++|+.|++.+|.+..++.... ..|..+++..|++.. +|. +. +
T Consensus 304 -~sL~~L~Ls~N~Lt~LP~~l~---~sL~~L~Ls~N~Lt~LP~~l~---~sL~~L~Ls~N~L~~--LP~~lp--~----- 367 (754)
T PRK15370 304 -SGITHLNVQSNSLTALPETLP---PGLKTLEAGENALTSLPASLP---PELQVLDVSKNQITV--LPETLP--P----- 367 (754)
T ss_pred -hhHHHHHhcCCccccCCcccc---ccceeccccCCccccCChhhc---CcccEEECCCCCCCc--CChhhc--C-----
Confidence 467888888888877665433 678888887777665443221 344445555444321 111 10 1
Q ss_pred cccEEECCCCCCccccccccCCCCCceeeccccccccccC
Q 047161 622 NLKKLNLRRNNFVSLRGTINHLPKFKHLKLDDCKRLRSLS 661 (720)
Q Consensus 622 ~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp 661 (720)
+|+.|+|++|.++.+|..+. .+|+.|++++| .+..+|
T Consensus 368 ~L~~LdLs~N~Lt~LP~~l~--~sL~~LdLs~N-~L~~LP 404 (754)
T PRK15370 368 TITTLDVSRNALTNLPENLP--AALQIMQASRN-NLVRLP 404 (754)
T ss_pred CcCEEECCCCcCCCCCHhHH--HHHHHHhhccC-CcccCc
Confidence 23555555665555554443 24555555555 344444
No 17
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.59 E-value=2.3e-17 Score=145.58 Aligned_cols=180 Identities=27% Similarity=0.483 Sum_probs=141.7
Q ss_pred ccccCCCCCCCCceeeecCCCCCCCCCCCCcccCccchhhhHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEe
Q 047161 447 LIRTPDFTGAPNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVN 526 (720)
Q Consensus 447 l~~~~~~~~l~~L~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~ 526 (720)
+..+|.+-.+.++..|.|++|+ +..+|++ |..+.+|+.|++++|. +..+|.+|+.++.|+.|+
T Consensus 23 f~~~~gLf~~s~ITrLtLSHNK-------l~~vppn---------ia~l~nlevln~~nnq-ie~lp~~issl~klr~ln 85 (264)
T KOG0617|consen 23 FEELPGLFNMSNITRLTLSHNK-------LTVVPPN---------IAELKNLEVLNLSNNQ-IEELPTSISSLPKLRILN 85 (264)
T ss_pred HhhcccccchhhhhhhhcccCc-------eeecCCc---------HHHhhhhhhhhcccch-hhhcChhhhhchhhhhee
Confidence 3345667778888999999988 7888888 8899999999999988 788999999999999999
Q ss_pred ccCCCCCcccCcCcCCCCCCCEEeccCccccc-CCccccCCcCCceEEEeecCCCCCCCCCcccccccccccccCCCCcc
Q 047161 527 LSRCSKLENMPESLGQMESLEELDVSGTVIRQ-PVPSIFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSM 605 (720)
Q Consensus 527 L~~~~~l~~lp~~~~~L~~L~~L~L~~n~l~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~ 605 (720)
++-| .+..+|..||.++.|+.||+.+|++.+ ..|+.+.-++.|+.|.+++|.+
T Consensus 86 vgmn-rl~~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndf------------------------- 139 (264)
T KOG0617|consen 86 VGMN-RLNILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDF------------------------- 139 (264)
T ss_pred cchh-hhhcCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCc-------------------------
Confidence 9887 467889999999999999999998765 3333333337777777654433
Q ss_pred cccCCCCCCCCCCCcccccEEECCCCCCccccccccCCCCCceeeccccccccccCCcccccceEeeecCccc
Q 047161 606 ALMLPSLSGLCSLTELNLKKLNLRRNNFVSLRGTINHLPKFKHLKLDDCKRLRSLSELPSDIKKVRVHGCTSL 678 (720)
Q Consensus 606 ~~~~~~l~~l~~L~~L~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~lp~~L~~L~l~~c~~L 678 (720)
...++.++.+++| +.|.+.+|.+-++|..++.++.|+.|.+.+|+ +.-+||.|-.|++.+....
T Consensus 140 e~lp~dvg~lt~l-----qil~lrdndll~lpkeig~lt~lrelhiqgnr----l~vlppel~~l~l~~~k~v 203 (264)
T KOG0617|consen 140 EILPPDVGKLTNL-----QILSLRDNDLLSLPKEIGDLTRLRELHIQGNR----LTVLPPELANLDLVGNKQV 203 (264)
T ss_pred ccCChhhhhhcce-----eEEeeccCchhhCcHHHHHHHHHHHHhcccce----eeecChhhhhhhhhhhHHH
Confidence 2334557777776 67778889999999999999999999999996 5666777777777765544
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.57 E-value=1.5e-14 Score=164.41 Aligned_cols=243 Identities=17% Similarity=0.253 Sum_probs=178.3
Q ss_pred ccceEEEecCCCCCCCCCCCCCCcceEeeCCCCchhHHhhhccCccccCCCCCCCCceeeecCCCCCCCCCCCCcccCcc
Q 047161 403 DELRLLQWHGYPLKSLPSSMEMDKTLECNMCYRRIEQFWKGIKNLIRTPDFTGAPNLEELILDGCKRLQNCTSLTTLPRE 482 (720)
Q Consensus 403 ~~l~~L~~~~~~~~~lp~~~~~~~l~~L~l~~~~i~~l~~~~~~l~~~~~~~~l~~L~~L~L~~~~~l~~~~~L~~lp~~ 482 (720)
+....|+++++.++++|..+. ..+..|++++|++..++.. + +++|++|++++|. ++.+|..
T Consensus 178 ~~~~~L~L~~~~LtsLP~~Ip-~~L~~L~Ls~N~LtsLP~~---------l--~~nL~~L~Ls~N~-------LtsLP~~ 238 (754)
T PRK15370 178 NNKTELRLKILGLTTIPACIP-EQITTLILDNNELKSLPEN---------L--QGNIKTLYANSNQ-------LTSIPAT 238 (754)
T ss_pred cCceEEEeCCCCcCcCCcccc-cCCcEEEecCCCCCcCChh---------h--ccCCCEEECCCCc-------cccCChh
Confidence 446778999999999998663 5788999999988765432 1 3589999999987 5677765
Q ss_pred chhhhHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCCCcccCcCcCCCCCCCEEeccCcccccCCcc
Q 047161 483 IATESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMPESLGQMESLEELDVSGTVIRQPVPS 562 (720)
Q Consensus 483 ~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~L~~n~l~~~~~~ 562 (720)
+ ..+|+.|+|++|. +..+|..+. .+|++|++++|. +..+|..+. ++|+.|++++|.+..+|..
T Consensus 239 ---------l--~~~L~~L~Ls~N~-L~~LP~~l~--s~L~~L~Ls~N~-L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~ 301 (754)
T PRK15370 239 ---------L--PDTIQEMELSINR-ITELPERLP--SALQSLDLFHNK-ISCLPENLP--EELRYLSVYDNSIRTLPAH 301 (754)
T ss_pred ---------h--hccccEEECcCCc-cCcCChhHh--CCCCEEECcCCc-cCccccccC--CCCcEEECCCCccccCccc
Confidence 2 2479999999998 568888764 589999999885 457887664 5899999999999988764
Q ss_pred ccCCcCCceEEEeecCCCCCCCCCcccccccccccccCCCCcccccCCCCCCCCCCCcccccEEECCCCCCccccccccC
Q 047161 563 IFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSLSGLCSLTELNLKKLNLRRNNFVSLRGTINH 642 (720)
Q Consensus 563 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~L~Ls~n~l~~lp~~i~~ 642 (720)
.. ++|+.|++++|.+..++...+ .+|..+.+..+.+... +..+. + +|+.|++++|+++.+|..+.
T Consensus 302 lp---~sL~~L~Ls~N~Lt~LP~~l~---~sL~~L~Ls~N~Lt~L-P~~l~--~-----sL~~L~Ls~N~L~~LP~~lp- 366 (754)
T PRK15370 302 LP---SGITHLNVQSNSLTALPETLP---PGLKTLEAGENALTSL-PASLP--P-----ELQVLDVSKNQITVLPETLP- 366 (754)
T ss_pred ch---hhHHHHHhcCCccccCCcccc---ccceeccccCCccccC-Chhhc--C-----cccEEECCCCCCCcCChhhc-
Confidence 43 678899999998887654433 4566666766654431 11121 2 34788999999998887664
Q ss_pred CCCCceeeccccccccccC-CcccccceEeeecCcccccchhhccC----chhHhhhhhhcc
Q 047161 643 LPKFKHLKLDDCKRLRSLS-ELPSDIKKVRVHGCTSLATISDALRS----CNSATSRIFCIN 699 (720)
Q Consensus 643 l~~L~~L~L~~c~~L~~lp-~lp~~L~~L~l~~c~~L~~lp~~~~~----~~~L~~l~~~~n 699 (720)
++|+.|+|++| .+..+| .+|.+|+.|++++| .+..+|..+.+ ++.+..+++.+|
T Consensus 367 -~~L~~LdLs~N-~Lt~LP~~l~~sL~~LdLs~N-~L~~LP~sl~~~~~~~~~l~~L~L~~N 425 (754)
T PRK15370 367 -PTITTLDVSRN-ALTNLPENLPAALQIMQASRN-NLVRLPESLPHFRGEGPQPTRIIVEYN 425 (754)
T ss_pred -CCcCEEECCCC-cCCCCCHhHHHHHHHHhhccC-CcccCchhHHHHhhcCCCccEEEeeCC
Confidence 68999999998 466776 35677999999885 46777765544 355566555554
No 19
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.57 E-value=3.5e-14 Score=160.42 Aligned_cols=237 Identities=22% Similarity=0.216 Sum_probs=166.9
Q ss_pred EEecCCCCCCCCCCCCCCcceEeeCCCCchhHHhhhccCccccCCCCCCCCceeeecCCCCCCCCCCCCcccCccchhhh
Q 047161 408 LQWHGYPLKSLPSSMEMDKTLECNMCYRRIEQFWKGIKNLIRTPDFTGAPNLEELILDGCKRLQNCTSLTTLPREIATES 487 (720)
Q Consensus 408 L~~~~~~~~~lp~~~~~~~l~~L~l~~~~i~~l~~~~~~l~~~~~~~~l~~L~~L~L~~~~~l~~~~~L~~lp~~~~~~~ 487 (720)
|+++.+.++++|..+. .++..|.+..|++..+ |. .+++|++|+|++|. |+.+|..
T Consensus 206 LdLs~~~LtsLP~~l~-~~L~~L~L~~N~Lt~L----------P~--lp~~Lk~LdLs~N~-------LtsLP~l----- 260 (788)
T PRK15387 206 LNVGESGLTTLPDCLP-AHITTLVIPDNNLTSL----------PA--LPPELRTLEVSGNQ-------LTSLPVL----- 260 (788)
T ss_pred EEcCCCCCCcCCcchh-cCCCEEEccCCcCCCC----------CC--CCCCCcEEEecCCc-------cCcccCc-----
Confidence 3444444444444432 2444455555444332 21 24689999999987 5677653
Q ss_pred HHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCCCcccCcCcCCCCCCCEEeccCcccccCCccccCCc
Q 047161 488 LQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMPESLGQMESLEELDVSGTVIRQPVPSIFFPS 567 (720)
Q Consensus 488 l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~L~~n~l~~~~~~~~~~~ 567 (720)
.++|+.|++++|. +..+|.. ..+|+.|++++|. +..+|.. +++|+.|++++|.+.++|.. .
T Consensus 261 -------p~sL~~L~Ls~N~-L~~Lp~l---p~~L~~L~Ls~N~-Lt~LP~~---p~~L~~LdLS~N~L~~Lp~l----p 321 (788)
T PRK15387 261 -------PPGLLELSIFSNP-LTHLPAL---PSGLCKLWIFGNQ-LTSLPVL---PPGLQELSVSDNQLASLPAL----P 321 (788)
T ss_pred -------ccccceeeccCCc-hhhhhhc---hhhcCEEECcCCc-ccccccc---ccccceeECCCCccccCCCC----c
Confidence 4678999999998 5677763 3678899999985 5567763 47899999999999987652 2
Q ss_pred CCceEEEeecCCCCCCCCCcccccccccccccCCCCcccccCCCCCCCCCCCcccccEEECCCCCCccccccccCCCCCc
Q 047161 568 RILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSLSGLCSLTELNLKKLNLRRNNFVSLRGTINHLPKFK 647 (720)
Q Consensus 568 ~~L~~L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~L~Ls~n~l~~lp~~i~~l~~L~ 647 (720)
.+|+.|.+.+|.+..++.. ...|+.|+++.|.+.. +|.+ .. +|+.|++++|.+..+|.. .++|+
T Consensus 322 ~~L~~L~Ls~N~L~~LP~l----p~~Lq~LdLS~N~Ls~--LP~l--p~-----~L~~L~Ls~N~L~~LP~l---~~~L~ 385 (788)
T PRK15387 322 SELCKLWAYNNQLTSLPTL----PSGLQELSVSDNQLAS--LPTL--PS-----ELYKLWAYNNRLTSLPAL---PSGLK 385 (788)
T ss_pred ccccccccccCcccccccc----ccccceEecCCCccCC--CCCC--Cc-----ccceehhhccccccCccc---ccccc
Confidence 5788899999988876531 2467788888776553 2221 12 346788999999998854 35799
Q ss_pred eeeccccccccccCCcccccceEeeecCcccccchhhccCchhHhhhhhhcccchhHHHHHh
Q 047161 648 HLKLDDCKRLRSLSELPSDIKKVRVHGCTSLATISDALRSCNSATSRIFCINCPKLILNWLQ 709 (720)
Q Consensus 648 ~L~L~~c~~L~~lp~lp~~L~~L~l~~c~~L~~lp~~~~~~~~L~~l~~~~nc~~l~~~w~~ 709 (720)
.|++++| .+..+|.+|++|+.|+++++. +..+|... .+|+.|++.+|.-.-+|..+.
T Consensus 386 ~LdLs~N-~Lt~LP~l~s~L~~LdLS~N~-LssIP~l~---~~L~~L~Ls~NqLt~LP~sl~ 442 (788)
T PRK15387 386 ELIVSGN-RLTSLPVLPSELKELMVSGNR-LTSLPMLP---SGLLSLSVYRNQLTRLPESLI 442 (788)
T ss_pred eEEecCC-cccCCCCcccCCCEEEccCCc-CCCCCcch---hhhhhhhhccCcccccChHHh
Confidence 9999998 588899999999999999975 78888643 467777888776665655444
No 20
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.55 E-value=3e-16 Score=171.53 Aligned_cols=265 Identities=23% Similarity=0.291 Sum_probs=164.5
Q ss_pred hccCCcceEEEeccccCCcccCccccceEEEecCCCCCCCCCCCCCCcceEeeCCCCchhHHhhhccCccccCCCCCCCC
Q 047161 379 LKMTNLRLLKIHNLQLPAGLESLSDELRLLQWHGYPLKSLPSSMEMDKTLECNMCYRRIEQFWKGIKNLIRTPDFTGAPN 458 (720)
Q Consensus 379 ~~l~~L~~L~l~~~~l~~~~~~l~~~l~~L~~~~~~~~~lp~~~~~~~l~~L~l~~~~i~~l~~~~~~l~~~~~~~~l~~ 458 (720)
..+.+|+.+....|++.. +...-..++.+..+.|++..+-..+.+.++..++++++++..+.. .++.+.+
T Consensus 196 s~~~~l~~l~c~rn~ls~-l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp~---------wi~~~~n 265 (1081)
T KOG0618|consen 196 SNLANLEVLHCERNQLSE-LEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLPE---------WIGACAN 265 (1081)
T ss_pred hhccchhhhhhhhcccce-EEecCcchheeeeccCcceeeccccccccceeeecchhhhhcchH---------HHHhccc
Confidence 344445555555554432 222223356666666666655445555666666666665555431 1455666
Q ss_pred ceeeecCCCCCCCCCCCCcccCccchhhhHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCCCcccCc
Q 047161 459 LEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMPE 538 (720)
Q Consensus 459 L~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~ 538 (720)
|+.++..+|. |..+|.. +...++|++|...+|. +..+|.....+++|++|+|..|. +..+|+
T Consensus 266 le~l~~n~N~-------l~~lp~r---------i~~~~~L~~l~~~~ne-l~yip~~le~~~sL~tLdL~~N~-L~~lp~ 327 (1081)
T KOG0618|consen 266 LEALNANHNR-------LVALPLR---------ISRITSLVSLSAAYNE-LEYIPPFLEGLKSLRTLDLQSNN-LPSLPD 327 (1081)
T ss_pred ceEecccchh-------HHhhHHH---------HhhhhhHHHHHhhhhh-hhhCCCcccccceeeeeeehhcc-ccccch
Confidence 6666666655 3444443 4444455555555554 34444444445555555555442 333332
Q ss_pred C--------------------------cCCCCCCCEEeccCcccccCCccccCCcCCceEEEeecCCCCCCCCCcccccc
Q 047161 539 S--------------------------LGQMESLEELDVSGTVIRQPVPSIFFPSRILKVYLFVDTRDHRTSSSSWHLWF 592 (720)
Q Consensus 539 ~--------------------------~~~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~ 592 (720)
. =..+..|+.|++.+|.++...-..+....+|+.|++++|+++.++...+..+.
T Consensus 328 ~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle 407 (1081)
T KOG0618|consen 328 NFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLE 407 (1081)
T ss_pred HHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchH
Confidence 1 11345677788888888764433333348999999999999999999999999
Q ss_pred cccccccCCCCcccccCCCCCCCCCCCcccccEEECCCCCCccccccccCCCCCceeecccccccccc--C-Ccc-cccc
Q 047161 593 PFSLMQKGSSDSMALMLPSLSGLCSLTELNLKKLNLRRNNFVSLRGTINHLPKFKHLKLDDCKRLRSL--S-ELP-SDIK 668 (720)
Q Consensus 593 ~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~l--p-~lp-~~L~ 668 (720)
.|+.+.+++|.+.... ..+..+..| +.|...+|.+..+| .+..++.|+.+|++.|. |+.+ | .+| ++|+
T Consensus 408 ~LeeL~LSGNkL~~Lp-~tva~~~~L-----~tL~ahsN~l~~fP-e~~~l~qL~~lDlS~N~-L~~~~l~~~~p~p~Lk 479 (1081)
T KOG0618|consen 408 ELEELNLSGNKLTTLP-DTVANLGRL-----HTLRAHSNQLLSFP-ELAQLPQLKVLDLSCNN-LSEVTLPEALPSPNLK 479 (1081)
T ss_pred HhHHHhcccchhhhhh-HHHHhhhhh-----HHHhhcCCceeech-hhhhcCcceEEecccch-hhhhhhhhhCCCcccc
Confidence 9999999988765543 335666666 56667788888889 78888999999998774 4433 2 466 8899
Q ss_pred eEeeecCcccc
Q 047161 669 KVRVHGCTSLA 679 (720)
Q Consensus 669 ~L~l~~c~~L~ 679 (720)
+|+++|+..+.
T Consensus 480 yLdlSGN~~l~ 490 (1081)
T KOG0618|consen 480 YLDLSGNTRLV 490 (1081)
T ss_pred eeeccCCcccc
Confidence 99999887643
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.49 E-value=4e-16 Score=137.78 Aligned_cols=170 Identities=21% Similarity=0.294 Sum_probs=137.5
Q ss_pred CCCCCCCCCcceEeeCCCCchhHHhhhccCccccCCCCCCCCceeeecCCCCCCCCCCCCcccCccchhhhHHHHhccCC
Q 047161 417 SLPSSMEMDKTLECNMCYRRIEQFWKGIKNLIRTPDFTGAPNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLT 496 (720)
Q Consensus 417 ~lp~~~~~~~l~~L~l~~~~i~~l~~~~~~l~~~~~~~~l~~L~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~ 496 (720)
.+|.-|......+|.+++|++... +|.+..+.+|++|++++|+ ++++|.+ ++.++
T Consensus 25 ~~~gLf~~s~ITrLtLSHNKl~~v---------ppnia~l~nlevln~~nnq-------ie~lp~~---------issl~ 79 (264)
T KOG0617|consen 25 ELPGLFNMSNITRLTLSHNKLTVV---------PPNIAELKNLEVLNLSNNQ-------IEELPTS---------ISSLP 79 (264)
T ss_pred hcccccchhhhhhhhcccCceeec---------CCcHHHhhhhhhhhcccch-------hhhcChh---------hhhch
Confidence 455555556666666666665443 4668899999999999998 7899998 89999
Q ss_pred CCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCCCc-ccCcCcCCCCCCCEEeccCcccccCCccccCCcCCceEEEe
Q 047161 497 GLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLE-NMPESLGQMESLEELDVSGTVIRQPVPSIFFPSRILKVYLF 575 (720)
Q Consensus 497 ~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~l~-~lp~~~~~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l 575 (720)
+|+.|++.-|+ +..+|..||.++.|+.|||++|.... .+|..|..|+.|+.|++++|.+.-+|+.++.+ ++|+.|.+
T Consensus 80 klr~lnvgmnr-l~~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~l-t~lqil~l 157 (264)
T KOG0617|consen 80 KLRILNVGMNR-LNILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKL-TNLQILSL 157 (264)
T ss_pred hhhheecchhh-hhcCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhh-cceeEEee
Confidence 99999999988 67899999999999999999987653 68999999999999999999999999999888 99999998
Q ss_pred ecCCCCCCCCCcccccccccccccCCCCcccccCCCCCCCCCCCcccccEEECCCCCCccccccccCC
Q 047161 576 VDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSLSGLCSLTELNLKKLNLRRNNFVSLRGTINHL 643 (720)
Q Consensus 576 ~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~L~Ls~n~l~~lp~~i~~l 643 (720)
.+|.+..+ +.+++.++.| ++|++.+|.++-+|..++++
T Consensus 158 rdndll~l-------------------------pkeig~lt~l-----relhiqgnrl~vlppel~~l 195 (264)
T KOG0617|consen 158 RDNDLLSL-------------------------PKEIGDLTRL-----RELHIQGNRLTVLPPELANL 195 (264)
T ss_pred ccCchhhC-------------------------cHHHHHHHHH-----HHHhcccceeeecChhhhhh
Confidence 66644332 1225556655 67788999999999776554
No 22
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.29 E-value=2.2e-13 Score=135.91 Aligned_cols=276 Identities=19% Similarity=0.219 Sum_probs=184.5
Q ss_pred EEEecCCCCCCCCCCCCCCcceEeeCCCCchhHHhhhccCccccCCCCCCCCceeeecCCCCCCCCCCCCcccCccchhh
Q 047161 407 LLQWHGYPLKSLPSSMEMDKTLECNMCYRRIEQFWKGIKNLIRTPDFTGAPNLEELILDGCKRLQNCTSLTTLPREIATE 486 (720)
Q Consensus 407 ~L~~~~~~~~~lp~~~~~~~l~~L~l~~~~i~~l~~~~~~l~~~~~~~~l~~L~~L~L~~~~~l~~~~~L~~lp~~~~~~ 486 (720)
..+-++-.++++|..+. ...+++.+..|+|+.+..+. |+.+++||.|||++|. |..|.+..
T Consensus 50 ~VdCr~~GL~eVP~~LP-~~tveirLdqN~I~~iP~~a--------F~~l~~LRrLdLS~N~-------Is~I~p~A--- 110 (498)
T KOG4237|consen 50 IVDCRGKGLTEVPANLP-PETVEIRLDQNQISSIPPGA--------FKTLHRLRRLDLSKNN-------ISFIAPDA--- 110 (498)
T ss_pred eEEccCCCcccCcccCC-CcceEEEeccCCcccCChhh--------ccchhhhceecccccc-------hhhcChHh---
Confidence 34555666778887763 45567788888887775543 8899999999999887 56664433
Q ss_pred hHHHHhccCCCCcEEeccCCCCCcccCC-CCCCCCCCCEEeccCCCCCcccCcCcCCCCCCCEEeccCcccccCCccccC
Q 047161 487 SLQKLIELLTGLVFLNLNDCKILVRLPS-TINGWKSLRTVNLSRCSKLENMPESLGQMESLEELDVSGTVIRQPVPSIFF 565 (720)
Q Consensus 487 ~l~~~i~~l~~L~~L~Ls~n~~~~~lp~-~i~~l~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~L~~n~l~~~~~~~~~ 565 (720)
|..+.+|..|-+.+++.+..+|. .|++|.+|+.|.+.-|.......+.+..|++|..|.+.+|.+..+....+.
T Consensus 111 -----F~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~ 185 (498)
T KOG4237|consen 111 -----FKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQ 185 (498)
T ss_pred -----hhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhcccccc
Confidence 66777777776666334677775 567888888888888766655567788889999999999888888776776
Q ss_pred CcCCceEEEeecCCCC------------CCCCCccccccc----------------------cccc--ccCCCCcccccC
Q 047161 566 PSRILKVYLFVDTRDH------------RTSSSSWHLWFP----------------------FSLM--QKGSSDSMALML 609 (720)
Q Consensus 566 ~~~~L~~L~l~~~~~~------------~~~~~~~~~l~~----------------------l~~l--~l~~~~~~~~~~ 609 (720)
.+.+++++++..|.+- ...+..+++..- ++.+ .+......+...
T Consensus 186 ~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~c 265 (498)
T KOG4237|consen 186 GLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSIC 265 (498)
T ss_pred chhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcC
Confidence 6688888887665521 111111111110 0000 000111111122
Q ss_pred CC--CCCCCCCCcccccEEECCCCCCccc-cccccCCCCCceeeccccccccccCCc----ccccceEeeecCcccccch
Q 047161 610 PS--LSGLCSLTELNLKKLNLRRNNFVSL-RGTINHLPKFKHLKLDDCKRLRSLSEL----PSDIKKVRVHGCTSLATIS 682 (720)
Q Consensus 610 ~~--l~~l~~L~~L~L~~L~Ls~n~l~~l-p~~i~~l~~L~~L~L~~c~~L~~lp~l----p~~L~~L~l~~c~~L~~lp 682 (720)
|. |..+++| +.|+|++|.++.+ +.++..+..++.|.|..|+ ++.+..- -..|+.|++.+..--.-.|
T Consensus 266 P~~cf~~L~~L-----~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~-l~~v~~~~f~~ls~L~tL~L~~N~it~~~~ 339 (498)
T KOG4237|consen 266 PAKCFKKLPNL-----RKLNLSNNKITRIEDGAFEGAAELQELYLTRNK-LEFVSSGMFQGLSGLKTLSLYDNQITTVAP 339 (498)
T ss_pred hHHHHhhcccc-----eEeccCCCccchhhhhhhcchhhhhhhhcCcch-HHHHHHHhhhccccceeeeecCCeeEEEec
Confidence 22 6666665 7889999999987 5889999999999999984 5555431 1569999999976555566
Q ss_pred hhccCchhHhhhhhhcc---cch---hHHHHHhhcc
Q 047161 683 DALRSCNSATSRIFCIN---CPK---LILNWLQQYS 712 (720)
Q Consensus 683 ~~~~~~~~L~~l~~~~n---c~~---l~~~w~~~~~ 712 (720)
..|..+.+|..+.+..| |.. .+..|+++..
T Consensus 340 ~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~ 375 (498)
T KOG4237|consen 340 GAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKS 375 (498)
T ss_pred ccccccceeeeeehccCcccCccchHHHHHHHhhCC
Confidence 77877888877666544 543 3578998754
No 23
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.19 E-value=1.8e-12 Score=129.45 Aligned_cols=245 Identities=17% Similarity=0.188 Sum_probs=173.9
Q ss_pred ccccCCcccCccccceEEEecCCCCCCCCCC-C-CCCcceEeeCCCCchhHHhhhccCccccCCCCCCCCceeeecCCCC
Q 047161 391 NLQLPAGLESLSDELRLLQWHGYPLKSLPSS-M-EMDKTLECNMCYRRIEQFWKGIKNLIRTPDFTGAPNLEELILDGCK 468 (720)
Q Consensus 391 ~~~l~~~~~~l~~~l~~L~~~~~~~~~lp~~-~-~~~~l~~L~l~~~~i~~l~~~~~~l~~~~~~~~l~~L~~L~L~~~~ 468 (720)
+-.+.+....+|.....+.++.|.+++||+. | ...+++++++++|+|..+..+ .|.++++|-.|-+.++.
T Consensus 55 ~~GL~eVP~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~--------AF~GL~~l~~Lvlyg~N 126 (498)
T KOG4237|consen 55 GKGLTEVPANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPD--------AFKGLASLLSLVLYGNN 126 (498)
T ss_pred CCCcccCcccCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChH--------hhhhhHhhhHHHhhcCC
Confidence 3344455567788899999999999999964 4 468999999999999877433 48888888888888854
Q ss_pred CCCCCCCCcccCccchhh----------------hHHHHhccCCCCcEEeccCCCCCcccCC-CCCCCCCCCEEeccCCC
Q 047161 469 RLQNCTSLTTLPREIATE----------------SLQKLIELLTGLVFLNLNDCKILVRLPS-TINGWKSLRTVNLSRCS 531 (720)
Q Consensus 469 ~l~~~~~L~~lp~~~~~~----------------~l~~~i~~l~~L~~L~Ls~n~~~~~lp~-~i~~l~~L~~L~L~~~~ 531 (720)
.+ +++|...+.+ .....+..+++|..|.+.+|. +..++. ++..+.+++++.+..|.
T Consensus 127 kI------~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~-~q~i~~~tf~~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 127 KI------TDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNK-IQSICKGTFQGLAAIKTLHLAQNP 199 (498)
T ss_pred ch------hhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchh-hhhhccccccchhccchHhhhcCc
Confidence 44 6666543321 123347788888888888887 566666 78888888888887765
Q ss_pred CC------------cccCcCcCCCCCCCEE-------------------------eccCcccc-cCCccccCCcCCceEE
Q 047161 532 KL------------ENMPESLGQMESLEEL-------------------------DVSGTVIR-QPVPSIFFPSRILKVY 573 (720)
Q Consensus 532 ~l------------~~lp~~~~~L~~L~~L-------------------------~L~~n~l~-~~~~~~~~~~~~L~~L 573 (720)
+. ...|..++......-. ..+.+... ..|..-+..+++|++|
T Consensus 200 ~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~l 279 (498)
T KOG4237|consen 200 FICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKL 279 (498)
T ss_pred cccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEe
Confidence 22 1122222221111111 11112111 2222334456899999
Q ss_pred EeecCCCCCCCCCcccccccccccccCCCCcccccCCCCCCCCCCCcccccEEECCCCCCccc-cccccCCCCCceeecc
Q 047161 574 LFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSLSGLCSLTELNLKKLNLRRNNFVSL-RGTINHLPKFKHLKLD 652 (720)
Q Consensus 574 ~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~L~Ls~n~l~~l-p~~i~~l~~L~~L~L~ 652 (720)
++++|.++.+.+..|.+...++.+.+..|.+.......|.++..| +.|+|.+|+++.+ |..+..+.+|.+|.|-
T Consensus 280 nlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L-----~tL~L~~N~it~~~~~aF~~~~~l~~l~l~ 354 (498)
T KOG4237|consen 280 NLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGL-----KTLSLYDNQITTVAPGAFQTLFSLSTLNLL 354 (498)
T ss_pred ccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccc-----eeeeecCCeeEEEecccccccceeeeeehc
Confidence 999999999999999999999999999888776666668888877 6788999999965 6788889999999998
Q ss_pred ccc
Q 047161 653 DCK 655 (720)
Q Consensus 653 ~c~ 655 (720)
.|+
T Consensus 355 ~Np 357 (498)
T KOG4237|consen 355 SNP 357 (498)
T ss_pred cCc
Confidence 766
No 24
>PF01582 TIR: TIR domain; InterPro: IPR000157 In Drosophila melanogaster the Toll protein is involved in establishment of dorso-ventral polarity in the embryo. In addition, members of the Toll family play a key role in innate antibacterial and antifungal immunity in insects as well as in mammals. These proteins are type-I transmembrane receptors that share an intracellular 200 residue domain with the interleukin-1 receptor (IL-1R), the Toll/IL-1R homologous region (TIR). The similarity between Toll-like receptors (LTRs) and IL-1R is not restricted to sequence homology since these proteins also share a similar signalling pathway. They both induce the activation of a Rel type transcription factor via an adaptor protein and a protein kinase []. Interestingly, MyD88, a cytoplasmic adaptor protein found in mammals, contains a TIR domain associated to a DEATH domain (see IPR000488 from INTERPRO) [, , ]. Besides the mammalian and Drosophila melanogaster proteins, a TIR domain is also found in a number of plant proteins implicated in host defence []. As MyD88, these proteins are cytoplasmic. Site directed mutagenesis and deletion analysis have shown that the TIR domain is essential for Toll and IL-1R activities. Sequence analysis have revealed the presence of three highly conserved regions among the different members of the family: box 1 (FDAFISY), box 2 (GYKLC-RD-PG), and box 3 (a conserved W surrounded by basic residues). It has been proposed that boxes 1 and 2 are involved in the binding of proteins involved in signalling, whereas box 3 is primarily involved in directing localization of receptor, perhaps through interactions with cytoskeletal elements [].; GO: 0005515 protein binding, 0007165 signal transduction, 0005622 intracellular; PDB: 3J0A_A 2J67_B 3JRN_A 1FYV_A 1O77_D 1FYX_A 1FYW_A 3OZI_B 1T3G_B 2JS7_A ....
Probab=99.14 E-value=4.6e-12 Score=115.52 Aligned_cols=89 Identities=31% Similarity=0.493 Sum_probs=75.3
Q ss_pred CceEeecCCCCCCCCcccHHHHHHHHhccceeEEeccCcccchhhhhhhccc---------------------Ccccc-c
Q 047161 1 GVKIFEDHKELERGKAVSPGLFKAIEESRFSVVVFSRNYAYSTWCLDELAKI---------------------PTVVR-K 58 (720)
Q Consensus 1 gi~~f~d~~~l~~g~~~~~~l~~ai~~s~~~ivv~S~~ya~s~wcl~el~~i---------------------p~~vr-~ 58 (720)
|+++|.|+.++..|..+.+++.+||++|+++|||||++|++|.||+.|+..+ +++|+ .
T Consensus 28 g~~~c~~~rD~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~s~wc~~el~~a~~~~~~~~~~~~Il~v~~~v~~~~~~~~ 107 (141)
T PF01582_consen 28 GYKLCLDERDFLPGESILDNIQEAIERSRRTIVVLSRNYLSSEWCLFELQEALERLLEEGRDKLILPVFYDVSPSDVRPD 107 (141)
T ss_dssp TS-EEEHHHCTSSSSCHHHHHHHHHHTEEEEEEEESHHHHHHTHHHHHHHHHHHHHHCSTCTTEEEEESSSS-CHHCHTH
T ss_pred CeEEEEechhhcccccccchhhHhhhhceeeEEEeecccccccchhhhhhhhhhhccccccccceeeEeccCChhhcChh
Confidence 7899999988999999999999999999999999999999999999999988 77787 6
Q ss_pred ccchHHHHHHHHHHHhhhC--hHHHHHHHHHHH
Q 047161 59 QTRSFHEAFAKHEEAFRES--TEKVQNWRHALT 89 (720)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~--~~~v~~w~~~l~ 89 (720)
+.+.+..++..+......+ ..+...|++++.
T Consensus 108 ~~~~~~~~~~~~~~w~~~~~~~~~~~fW~~l~~ 140 (141)
T PF01582_consen 108 QSLRFLLRFLTYLRWPDDDSREDRSWFWKKLRY 140 (141)
T ss_dssp HHHHHHHHCTHCEETSSSGGGGGHHHHHHHHHH
T ss_pred hhHHHHHHhhhheeCCCCCCccHHHHHHHHHhc
Confidence 7777887776665544332 467889998875
No 25
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.08 E-value=4.1e-12 Score=132.53 Aligned_cols=171 Identities=25% Similarity=0.326 Sum_probs=132.1
Q ss_pred CCCCCCceeeecCCCCCCCCCCCCcccCccchhhhHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCC
Q 047161 453 FTGAPNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSK 532 (720)
Q Consensus 453 ~~~l~~L~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~ 532 (720)
+..|-.|+.|.|..|. ++.+|.. ++++..|.+|||+.|. +..+|..++.|+ |+.|.+++| .
T Consensus 94 ~~~f~~Le~liLy~n~-------~r~ip~~---------i~~L~~lt~l~ls~Nq-lS~lp~~lC~lp-Lkvli~sNN-k 154 (722)
T KOG0532|consen 94 ACAFVSLESLILYHNC-------IRTIPEA---------ICNLEALTFLDLSSNQ-LSHLPDGLCDLP-LKVLIVSNN-K 154 (722)
T ss_pred HHHHHHHHHHHHHhcc-------ceecchh---------hhhhhHHHHhhhccch-hhcCChhhhcCc-ceeEEEecC-c
Confidence 4455567777787766 5777776 8889999999999998 678899998887 899999886 5
Q ss_pred CcccCcCcCCCCCCCEEeccCcccccCCccccCCcCCceEEEeecCCCCCCCCCcccccccccccccCCCCcccccCCCC
Q 047161 533 LENMPESLGQMESLEELDVSGTVIRQPVPSIFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSL 612 (720)
Q Consensus 533 l~~lp~~~~~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~l 612 (720)
++.+|+.++.+..|.+||.+.|.+..+|+..+++ .+|+.|.+..|.+..++ +.+
T Consensus 155 l~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l-~slr~l~vrRn~l~~lp-------------------------~El 208 (722)
T KOG0532|consen 155 LTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYL-TSLRDLNVRRNHLEDLP-------------------------EEL 208 (722)
T ss_pred cccCCcccccchhHHHhhhhhhhhhhchHHhhhH-HHHHHHHHhhhhhhhCC-------------------------HHH
Confidence 7889999998899999999999999999988887 88888777555433321 112
Q ss_pred CCCCCCCcccccEEECCCCCCccccccccCCCCCceeeccccccccccCC------cccccceEeeecC
Q 047161 613 SGLCSLTELNLKKLNLRRNNFVSLRGTINHLPKFKHLKLDDCKRLRSLSE------LPSDIKKVRVHGC 675 (720)
Q Consensus 613 ~~l~~L~~L~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~------lp~~L~~L~l~~c 675 (720)
-.|.|..||+|+|++..+|-.|.+|..|++|.|.+|+ |++-|. .---.++|++.-|
T Consensus 209 ------~~LpLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNP-LqSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 209 ------CSLPLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNP-LQSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred ------hCCceeeeecccCceeecchhhhhhhhheeeeeccCC-CCCChHHHHhccceeeeeeecchhc
Confidence 2335688999999999999999999999999999997 443331 1122678888877
No 26
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.03 E-value=7.1e-11 Score=136.78 Aligned_cols=251 Identities=22% Similarity=0.298 Sum_probs=158.8
Q ss_pred CCCCCCCCCCCcceEeeCCCCchhHHhhhccCccccCCCCCCCCceeeecCCCCCCCCCCCCcccCccchhhhHHHHhcc
Q 047161 415 LKSLPSSMEMDKTLECNMCYRRIEQFWKGIKNLIRTPDFTGAPNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIEL 494 (720)
Q Consensus 415 ~~~lp~~~~~~~l~~L~l~~~~i~~l~~~~~~l~~~~~~~~l~~L~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~ 494 (720)
....|........++..+.++++.... .-..++.|++|-+.+|.. .+..++..+ |..
T Consensus 513 ~~~~~~~~~~~~~rr~s~~~~~~~~~~----------~~~~~~~L~tLll~~n~~-----~l~~is~~f--------f~~ 569 (889)
T KOG4658|consen 513 LSEIPQVKSWNSVRRMSLMNNKIEHIA----------GSSENPKLRTLLLQRNSD-----WLLEISGEF--------FRS 569 (889)
T ss_pred ccccccccchhheeEEEEeccchhhcc----------CCCCCCccceEEEeecch-----hhhhcCHHH--------Hhh
Confidence 334565555667777777777665542 334566789998888763 124555554 778
Q ss_pred CCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCCCcccCcCcCCCCCCCEEeccCcccccCCccccCCcCCceEEE
Q 047161 495 LTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMPESLGQMESLEELDVSGTVIRQPVPSIFFPSRILKVYL 574 (720)
Q Consensus 495 l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ 574 (720)
++.|++|||++|...+.+|.+|++|-+||+|+++++ .+..+|..+++|+.|.+|++..+.....++.+...+++|++|.
T Consensus 570 m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t-~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~ 648 (889)
T KOG4658|consen 570 LPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDT-GISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLR 648 (889)
T ss_pred CcceEEEECCCCCccCcCChHHhhhhhhhcccccCC-CccccchHHHHHHhhheeccccccccccccchhhhcccccEEE
Confidence 999999999999989999999999999999999996 5779999999999999999999987777777777569999999
Q ss_pred eecCC--CCCCCCCcccccccccccccCCCCcccccCCCCCCCCCCCcccccEEECCCCCCccccccccCCCCCceeecc
Q 047161 575 FVDTR--DHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSLSGLCSLTELNLKKLNLRRNNFVSLRGTINHLPKFKHLKLD 652 (720)
Q Consensus 575 l~~~~--~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~ 652 (720)
+.... .....-.....+.+|+.+....... .....+..++.|..+. ..+.+.++.....+..+..+.+|+.|.+.
T Consensus 649 l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~--~~~e~l~~~~~L~~~~-~~l~~~~~~~~~~~~~~~~l~~L~~L~i~ 725 (889)
T KOG4658|consen 649 LPRSALSNDKLLLKELENLEHLENLSITISSV--LLLEDLLGMTRLRSLL-QSLSIEGCSKRTLISSLGSLGNLEELSIL 725 (889)
T ss_pred eeccccccchhhHHhhhcccchhhheeecchh--HhHhhhhhhHHHHHHh-HhhhhcccccceeecccccccCcceEEEE
Confidence 85443 1111111222233333322211111 0111122223332211 23333445555667777888899999999
Q ss_pred ccccccccCCc---------ccccceEeeecCcccccchhhccCchhHhh
Q 047161 653 DCKRLRSLSEL---------PSDIKKVRVHGCTSLATISDALRSCNSATS 693 (720)
Q Consensus 653 ~c~~L~~lp~l---------p~~L~~L~l~~c~~L~~lp~~~~~~~~L~~ 693 (720)
+|...+..... .+++..+.+.+|..++.+. +..-.++|+.
T Consensus 726 ~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~-~~~f~~~L~~ 774 (889)
T KOG4658|consen 726 DCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLT-WLLFAPHLTS 774 (889)
T ss_pred cCCCchhhcccccccchhhhHHHHHHHHhhccccccccc-hhhccCcccE
Confidence 88754322111 2245566666666555443 2223344554
No 27
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.00 E-value=1.2e-11 Score=130.11 Aligned_cols=235 Identities=17% Similarity=0.172 Sum_probs=120.7
Q ss_pred cceEeeCCCCchhHHhhhccCccccCCCCCCCCceeeecCCCCCCCCCCCCcccCccchhhhHHHHhccCCCCcEEeccC
Q 047161 426 KTLECNMCYRRIEQFWKGIKNLIRTPDFTGAPNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLND 505 (720)
Q Consensus 426 ~l~~L~l~~~~i~~l~~~~~~l~~~~~~~~l~~L~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~ 505 (720)
.+..+.+.++.+..-... . -...+...++|+.|+++++. +...+. ....++..+..+++|++|++++
T Consensus 24 ~L~~l~l~~~~l~~~~~~--~--i~~~l~~~~~l~~l~l~~~~-------~~~~~~--~~~~~~~~l~~~~~L~~L~l~~ 90 (319)
T cd00116 24 CLQVLRLEGNTLGEEAAK--A--LASALRPQPSLKELCLSLNE-------TGRIPR--GLQSLLQGLTKGCGLQELDLSD 90 (319)
T ss_pred hccEEeecCCCCcHHHHH--H--HHHHHhhCCCceEEeccccc-------cCCcch--HHHHHHHHHHhcCceeEEEccC
Confidence 366666666655321000 0 00124455667777777654 111111 1233344466777888888888
Q ss_pred CCCCcccCCCCCCCCC---CCEEeccCCCCCc----ccCcCcCCC-CCCCEEeccCcccccCC----ccccCCcCCceEE
Q 047161 506 CKILVRLPSTINGWKS---LRTVNLSRCSKLE----NMPESLGQM-ESLEELDVSGTVIRQPV----PSIFFPSRILKVY 573 (720)
Q Consensus 506 n~~~~~lp~~i~~l~~---L~~L~L~~~~~l~----~lp~~~~~L-~~L~~L~L~~n~l~~~~----~~~~~~~~~L~~L 573 (720)
|.+....+..+..+.+ |++|++++|.... .+...+..+ ++|+.|++++|.+++.. ...+..+++|+.|
T Consensus 91 ~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L 170 (319)
T cd00116 91 NALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKEL 170 (319)
T ss_pred CCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEE
Confidence 7765445544444444 8888888776542 223344555 77888888888776321 1122223567777
Q ss_pred EeecCCCCCCCCCcccccccccccccCCCCcccccCCCCCCCCCCCcccccEEECCCCCCc-----cccccccCCCCCce
Q 047161 574 LFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSLSGLCSLTELNLKKLNLRRNNFV-----SLRGTINHLPKFKH 648 (720)
Q Consensus 574 ~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~L~Ls~n~l~-----~lp~~i~~l~~L~~ 648 (720)
++.+|.+....... ....+..+++| +.|++++|.+. .++..+..+++|++
T Consensus 171 ~l~~n~l~~~~~~~--------------------l~~~l~~~~~L-----~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~ 225 (319)
T cd00116 171 NLANNGIGDAGIRA--------------------LAEGLKANCNL-----EVLDLNNNGLTDEGASALAETLASLKSLEV 225 (319)
T ss_pred ECcCCCCchHHHHH--------------------HHHHHHhCCCC-----CEEeccCCccChHHHHHHHHHhcccCCCCE
Confidence 77655443210000 00011222333 55666666554 23344556677777
Q ss_pred eeccccccccc-----cC-Cc---ccccceEeeecCccc----ccchhhccCchhHhhhhhhcc
Q 047161 649 LKLDDCKRLRS-----LS-EL---PSDIKKVRVHGCTSL----ATISDALRSCNSATSRIFCIN 699 (720)
Q Consensus 649 L~L~~c~~L~~-----lp-~l---p~~L~~L~l~~c~~L----~~lp~~~~~~~~L~~l~~~~n 699 (720)
|++++|+ +.. +. .+ .+.|++|++.+|.-- ..+...+..+++|+.+++..|
T Consensus 226 L~ls~n~-l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N 288 (319)
T cd00116 226 LNLGDNN-LTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGN 288 (319)
T ss_pred EecCCCc-CchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCC
Confidence 7777764 221 11 11 145777777776421 233444455566666665554
No 28
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.88 E-value=2.5e-10 Score=120.13 Aligned_cols=231 Identities=20% Similarity=0.195 Sum_probs=139.5
Q ss_pred cceEEEecCCCCC-----CCCCCC-CCCcceEeeCCCCchhHHhhhccCccc-cCCCCCCCCceeeecCCCCCCCCCCCC
Q 047161 404 ELRLLQWHGYPLK-----SLPSSM-EMDKTLECNMCYRRIEQFWKGIKNLIR-TPDFTGAPNLEELILDGCKRLQNCTSL 476 (720)
Q Consensus 404 ~l~~L~~~~~~~~-----~lp~~~-~~~~l~~L~l~~~~i~~l~~~~~~l~~-~~~~~~l~~L~~L~L~~~~~l~~~~~L 476 (720)
.++.+.+.++.+. .++..+ ....+.++.+.++.+...... +.. ...+..+++|+.|++++|. +
T Consensus 24 ~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~---~~~~~~~l~~~~~L~~L~l~~~~-------~ 93 (319)
T cd00116 24 CLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRG---LQSLLQGLTKGCGLQELDLSDNA-------L 93 (319)
T ss_pred hccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchH---HHHHHHHHHhcCceeEEEccCCC-------C
Confidence 3888899988874 234333 234578888887765421000 000 1235668899999999987 2
Q ss_pred cc-cCccchhhhHHHHhccCCCCcEEeccCCCCCc----ccCCCCCCC-CCCCEEeccCCCCCc----ccCcCcCCCCCC
Q 047161 477 TT-LPREIATESLQKLIELLTGLVFLNLNDCKILV----RLPSTINGW-KSLRTVNLSRCSKLE----NMPESLGQMESL 546 (720)
Q Consensus 477 ~~-lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~----~lp~~i~~l-~~L~~L~L~~~~~l~----~lp~~~~~L~~L 546 (720)
.. .+.. +...... ++|++|++++|.+.. .+...+..+ ++|+.|++++|.+.+ .++..+..+++|
T Consensus 94 ~~~~~~~-----~~~l~~~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L 167 (319)
T cd00116 94 GPDGCGV-----LESLLRS-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDL 167 (319)
T ss_pred ChhHHHH-----HHHHhcc-CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCc
Confidence 21 1211 1111223 559999999998552 334455667 899999999998763 344567778899
Q ss_pred CEEeccCcccccCC----ccccCCcCCceEEEeecCCCCCCCCCcccccccccccccCCCCcccccCCCCCCCCCCCccc
Q 047161 547 EELDVSGTVIRQPV----PSIFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSLSGLCSLTELN 622 (720)
Q Consensus 547 ~~L~L~~n~l~~~~----~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~ 622 (720)
++|++++|.+.+.. +......++|+.|++++|.+.......+ ...+..+++|
T Consensus 168 ~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l--------------------~~~~~~~~~L---- 223 (319)
T cd00116 168 KELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASAL--------------------AETLASLKSL---- 223 (319)
T ss_pred CEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHH--------------------HHHhcccCCC----
Confidence 99999999987421 1112222689999997776542211100 0113344444
Q ss_pred ccEEECCCCCCccc-cccc-----cCCCCCceeeccccccc--------cccCCcccccceEeeecCc
Q 047161 623 LKKLNLRRNNFVSL-RGTI-----NHLPKFKHLKLDDCKRL--------RSLSELPSDIKKVRVHGCT 676 (720)
Q Consensus 623 L~~L~Ls~n~l~~l-p~~i-----~~l~~L~~L~L~~c~~L--------~~lp~lp~~L~~L~l~~c~ 676 (720)
+.|++++|.++.. +..+ ...+.|++|++++|..- ..++.+ ++|+.++++++.
T Consensus 224 -~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~-~~L~~l~l~~N~ 289 (319)
T cd00116 224 -EVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEK-ESLLELDLRGNK 289 (319)
T ss_pred -CEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcC-CCccEEECCCCC
Confidence 6778888877631 1111 12478888888888521 122333 468888888755
No 29
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.71 E-value=9.7e-10 Score=115.17 Aligned_cols=173 Identities=25% Similarity=0.359 Sum_probs=113.2
Q ss_pred HHHHhhhcCCchhhhhhhcCCCCCCCccccchhhhhHHHHhcC-cchhccCCcceEEEecccc---CCcccCccccceEE
Q 047161 333 DVLEISFNGLKGRIEIMRKSPEEPGKCSRLWKVADVSHVLRRN-TAFLKMTNLRLLKIHNLQL---PAGLESLSDELRLL 408 (720)
Q Consensus 333 ~~L~lSyn~L~~~~~~~~~~p~~~~~l~~Lw~~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~l---~~~~~~l~~~l~~L 408 (720)
...++|-|.++.. |++...+..|-....+.|.+... ++..++..|.+++++.|++ |..++.++ |+.|
T Consensus 78 ~~aDlsrNR~~el-------p~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp--Lkvl 148 (722)
T KOG0532|consen 78 VFADLSRNRFSEL-------PEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP--LKVL 148 (722)
T ss_pred hhhhccccccccC-------chHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCc--ceeE
Confidence 3456677766544 55555455444444444444433 3667777888888888866 55566665 7778
Q ss_pred EecCCCCCCCCCCCCCCcceEeeCCCCchhHHhhhccCccccCCCCCCCCceeeecCCCCCCCCCCCCcccCccchhhhH
Q 047161 409 QWHGYPLKSLPSSMEMDKTLECNMCYRRIEQFWKGIKNLIRTPDFTGAPNLEELILDGCKRLQNCTSLTTLPREIATESL 488 (720)
Q Consensus 409 ~~~~~~~~~lp~~~~~~~l~~L~l~~~~i~~l~~~~~~l~~~~~~~~l~~L~~L~L~~~~~l~~~~~L~~lp~~~~~~~l 488 (720)
.+.+|.++.+|.. ++.++.|..||.+.|. +..+|..
T Consensus 149 i~sNNkl~~lp~~-------------------------------ig~~~tl~~ld~s~ne-------i~slpsq------ 184 (722)
T KOG0532|consen 149 IVSNNKLTSLPEE-------------------------------IGLLPTLAHLDVSKNE-------IQSLPSQ------ 184 (722)
T ss_pred EEecCccccCCcc-------------------------------cccchhHHHhhhhhhh-------hhhchHH------
Confidence 8888888888865 3455566777777766 4566665
Q ss_pred HHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCCCcccCcCcCCCCCCCEEeccCcccccCCcccc
Q 047161 489 QKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMPESLGQMESLEELDVSGTVIRQPVPSIF 564 (720)
Q Consensus 489 ~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~L~~n~l~~~~~~~~ 564 (720)
++.+.+|+.|++++|+ ...+|+.++.| .|..||++.| .+..+|-.|.+|+.|++|-|.+|.+...|.++.
T Consensus 185 ---l~~l~slr~l~vrRn~-l~~lp~El~~L-pLi~lDfScN-kis~iPv~fr~m~~Lq~l~LenNPLqSPPAqIC 254 (722)
T KOG0532|consen 185 ---LGYLTSLRDLNVRRNH-LEDLPEELCSL-PLIRLDFSCN-KISYLPVDFRKMRHLQVLQLENNPLQSPPAQIC 254 (722)
T ss_pred ---hhhHHHHHHHHHhhhh-hhhCCHHHhCC-ceeeeecccC-ceeecchhhhhhhhheeeeeccCCCCCChHHHH
Confidence 6677777777777776 45667666644 3677777765 455677777777777777777777776665544
No 30
>smart00255 TIR Toll - interleukin 1 - resistance.
Probab=98.71 E-value=2.7e-08 Score=90.70 Aligned_cols=90 Identities=38% Similarity=0.618 Sum_probs=70.2
Q ss_pred CceEeecCCCCCCCCcccHHHHHHHHhccceeEEeccCcccchhhhhhhccc--------------------Cccccccc
Q 047161 1 GVKIFEDHKELERGKAVSPGLFKAIEESRFSVVVFSRNYAYSTWCLDELAKI--------------------PTVVRKQT 60 (720)
Q Consensus 1 gi~~f~d~~~l~~g~~~~~~l~~ai~~s~~~ivv~S~~ya~s~wcl~el~~i--------------------p~~vr~~~ 60 (720)
|+.+|.|+. ...|.... ++.+||++|++.|+|+|++|..|.||..|+..+ |.++..+.
T Consensus 30 ~~~v~~d~~-~~~~~~~~-~i~~~i~~s~~~i~vlS~~~~~S~w~~~E~~~a~~~~~~~~~~~iIPI~~~~~~~~~~~~~ 107 (140)
T smart00255 30 GLCVFIDDF-EPGGGDLE-EIDEAIEKSRIAIVVLSPNYAESEWCLDELVAALENALEEGGLRVIPIFYEVIPSDVRKQP 107 (140)
T ss_pred CcEEEecCc-ccccchHH-HHHHHHHHCcEEEEEECcccccChhHHHHHHHHHHHHHHcCCCeEEEEEEecChHHHHhcc
Confidence 688999985 33333334 999999999999999999999999999999776 56688888
Q ss_pred chHHHHHHHHHHHhhhChHHHHHHHHHHHHhcc
Q 047161 61 RSFHEAFAKHEEAFRESTEKVQNWRHALTEVAN 93 (720)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~v~~w~~~l~~~~~ 93 (720)
+.+..++..+..+...+..+ ..|++.+..+++
T Consensus 108 ~~l~~~~~~~~~~w~~~~~~-~fW~~~~~~l~~ 139 (140)
T smart00255 108 GKFRKVLKKNYLKWPEDEKE-RFWKKALYAVPS 139 (140)
T ss_pred cHHHHHHHHHHhhcCCchhH-HHHHHHHHHhcc
Confidence 89999887774444333332 689998877653
No 31
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.68 E-value=8.5e-09 Score=96.08 Aligned_cols=132 Identities=19% Similarity=0.222 Sum_probs=40.3
Q ss_pred CCCCCCCCCCCcceEeeCCCCchhHHhhhccCccccCCCC-CCCCceeeecCCCCCCCCCCCCcccCccchhhhHHHHhc
Q 047161 415 LKSLPSSMEMDKTLECNMCYRRIEQFWKGIKNLIRTPDFT-GAPNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIE 493 (720)
Q Consensus 415 ~~~lp~~~~~~~l~~L~l~~~~i~~l~~~~~~l~~~~~~~-~l~~L~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~ 493 (720)
+..+|......++++|++.++.+..+ ..++ .+.+|+.|+|++|. ++.++. +.
T Consensus 9 i~~~~~~~n~~~~~~L~L~~n~I~~I----------e~L~~~l~~L~~L~Ls~N~-------I~~l~~----------l~ 61 (175)
T PF14580_consen 9 IEQIAQYNNPVKLRELNLRGNQISTI----------ENLGATLDKLEVLDLSNNQ-------ITKLEG----------LP 61 (175)
T ss_dssp -------------------------------------S--TT-TT--EEE-TTS---------S--TT------------
T ss_pred cccccccccccccccccccccccccc----------cchhhhhcCCCEEECCCCC-------CccccC----------cc
Confidence 33444444444555566666555443 1233 45677777777776 455543 55
Q ss_pred cCCCCcEEeccCCCCCcccCCCC-CCCCCCCEEeccCCCCCcccC--cCcCCCCCCCEEeccCcccccCCc---cccCCc
Q 047161 494 LLTGLVFLNLNDCKILVRLPSTI-NGWKSLRTVNLSRCSKLENMP--ESLGQMESLEELDVSGTVIRQPVP---SIFFPS 567 (720)
Q Consensus 494 ~l~~L~~L~Ls~n~~~~~lp~~i-~~l~~L~~L~L~~~~~l~~lp--~~~~~L~~L~~L~L~~n~l~~~~~---~~~~~~ 567 (720)
.+++|+.|++++|. +..+++.+ ..+++|++|++++|.+. .+. ..+..+++|+.|++.+|++...+. .+...+
T Consensus 62 ~L~~L~~L~L~~N~-I~~i~~~l~~~lp~L~~L~L~~N~I~-~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~l 139 (175)
T PF14580_consen 62 GLPRLKTLDLSNNR-ISSISEGLDKNLPNLQELYLSNNKIS-DLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKL 139 (175)
T ss_dssp --TT--EEE--SS----S-CHHHHHH-TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-
T ss_pred ChhhhhhcccCCCC-CCccccchHHhCCcCCEEECcCCcCC-ChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHc
Confidence 67777777777777 34454333 24677777777776542 222 235567777777777777765432 122334
Q ss_pred CCceEEEe
Q 047161 568 RILKVYLF 575 (720)
Q Consensus 568 ~~L~~L~l 575 (720)
++|+.|+.
T Consensus 140 P~Lk~LD~ 147 (175)
T PF14580_consen 140 PSLKVLDG 147 (175)
T ss_dssp TT-SEETT
T ss_pred ChhheeCC
Confidence 66666654
No 32
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.66 E-value=2.1e-08 Score=108.80 Aligned_cols=174 Identities=26% Similarity=0.357 Sum_probs=102.5
Q ss_pred CCCCceeeecCCCCCCCCCCCCcccCccchhhhHHHHhccCC-CCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCCC
Q 047161 455 GAPNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLT-GLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKL 533 (720)
Q Consensus 455 ~l~~L~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~-~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~l 533 (720)
.++.+..|++.+|. +..++.. .+.+. +|+.|++++|. +..+|..++.+++|+.|++++|. +
T Consensus 114 ~~~~l~~L~l~~n~-------i~~i~~~---------~~~~~~nL~~L~l~~N~-i~~l~~~~~~l~~L~~L~l~~N~-l 175 (394)
T COG4886 114 ELTNLTSLDLDNNN-------ITDIPPL---------IGLLKSNLKELDLSDNK-IESLPSPLRNLPNLKNLDLSFND-L 175 (394)
T ss_pred cccceeEEecCCcc-------cccCccc---------cccchhhcccccccccc-hhhhhhhhhccccccccccCCch-h
Confidence 34567777777766 4566664 45553 77777777777 56666667777778888777764 5
Q ss_pred cccCcCcCCCCCCCEEeccCcccccCCccccCCcCCceEEEeecCCCCCCCCCcccccccccccccCCCCcccccCCCCC
Q 047161 534 ENMPESLGQMESLEELDVSGTVIRQPVPSIFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSLS 613 (720)
Q Consensus 534 ~~lp~~~~~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~l~ 613 (720)
..+|...+.+++|+.|++++|.+..+|+.+... ..|+.|.+.+|.... ....+..+..+..+.+..+.... .+..++
T Consensus 176 ~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~-~~L~~l~~~~N~~~~-~~~~~~~~~~l~~l~l~~n~~~~-~~~~~~ 252 (394)
T COG4886 176 SDLPKLLSNLSNLNNLDLSGNKISDLPPEIELL-SALEELDLSNNSIIE-LLSSLSNLKNLSGLELSNNKLED-LPESIG 252 (394)
T ss_pred hhhhhhhhhhhhhhheeccCCccccCchhhhhh-hhhhhhhhcCCccee-cchhhhhcccccccccCCceeee-ccchhc
Confidence 556666657777777778777777777654333 557777776553111 11112222222222222221111 012234
Q ss_pred CCCCCCcccccEEECCCCCCccccccccCCCCCceeeccccc
Q 047161 614 GLCSLTELNLKKLNLRRNNFVSLRGTINHLPKFKHLKLDDCK 655 (720)
Q Consensus 614 ~l~~L~~L~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~ 655 (720)
.++++ +.|++++|.++.++. +..+.+|+.|+++++.
T Consensus 253 ~l~~l-----~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n~ 288 (394)
T COG4886 253 NLSNL-----ETLDLSNNQISSISS-LGSLTNLRELDLSGNS 288 (394)
T ss_pred ccccc-----ceecccccccccccc-ccccCccCEEeccCcc
Confidence 44443 666777777776665 6667777777777765
No 33
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.59 E-value=5.2e-08 Score=105.73 Aligned_cols=196 Identities=23% Similarity=0.296 Sum_probs=140.1
Q ss_pred eEEEeccccCCcccCcc--ccceEEEecCCCCCCCCCCCCCC--cceEeeCCCCchhHHhhhccCccccCCCCCCCCcee
Q 047161 386 LLKIHNLQLPAGLESLS--DELRLLQWHGYPLKSLPSSMEMD--KTLECNMCYRRIEQFWKGIKNLIRTPDFTGAPNLEE 461 (720)
Q Consensus 386 ~L~l~~~~l~~~~~~l~--~~l~~L~~~~~~~~~lp~~~~~~--~l~~L~l~~~~i~~l~~~~~~l~~~~~~~~l~~L~~ 461 (720)
.+....+.+......+. ..+..+.+.++.+..+|...... ++..+++..|++..+. ..+..+++|+.
T Consensus 97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~---------~~~~~l~~L~~ 167 (394)
T COG4886 97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLP---------SPLRNLPNLKN 167 (394)
T ss_pred eeeccccccccCchhhhcccceeEEecCCcccccCccccccchhhcccccccccchhhhh---------hhhhccccccc
Confidence 46666666533222222 35888999999999999877765 7888888888887763 23678888999
Q ss_pred eecCCCCCCCCCCCCcccCccchhhhHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCCCcccCcCcC
Q 047161 462 LILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMPESLG 541 (720)
Q Consensus 462 L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~ 541 (720)
|++++|. +..+|.. .+.++.|+.|++++|. +..+|..+..+..|++|.+++|. ....+..+.
T Consensus 168 L~l~~N~-------l~~l~~~---------~~~~~~L~~L~ls~N~-i~~l~~~~~~~~~L~~l~~~~N~-~~~~~~~~~ 229 (394)
T COG4886 168 LDLSFND-------LSDLPKL---------LSNLSNLNNLDLSGNK-ISDLPPEIELLSALEELDLSNNS-IIELLSSLS 229 (394)
T ss_pred cccCCch-------hhhhhhh---------hhhhhhhhheeccCCc-cccCchhhhhhhhhhhhhhcCCc-ceecchhhh
Confidence 9999888 6777765 4468888999999888 67788877677779999988874 445666788
Q ss_pred CCCCCCEEeccCcccccCCccccCCcCCceEEEeecCCCCCCCCCcccccccccccccCCCCcccccCCCCCCCCCCCcc
Q 047161 542 QMESLEELDVSGTVIRQPVPSIFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSLSGLCSLTEL 621 (720)
Q Consensus 542 ~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L 621 (720)
++.++..|.+.+|++...+..+..+ .+++.|++++|.+..+ +.++.+.+|
T Consensus 230 ~~~~l~~l~l~~n~~~~~~~~~~~l-~~l~~L~~s~n~i~~i--------------------------~~~~~~~~l--- 279 (394)
T COG4886 230 NLKNLSGLELSNNKLEDLPESIGNL-SNLETLDLSNNQISSI--------------------------SSLGSLTNL--- 279 (394)
T ss_pred hcccccccccCCceeeeccchhccc-cccceecccccccccc--------------------------ccccccCcc---
Confidence 8888888888888877665444444 6788888765543332 114444444
Q ss_pred cccEEECCCCCCccccccc
Q 047161 622 NLKKLNLRRNNFVSLRGTI 640 (720)
Q Consensus 622 ~L~~L~Ls~n~l~~lp~~i 640 (720)
+.|++++|.+...+...
T Consensus 280 --~~L~~s~n~~~~~~~~~ 296 (394)
T COG4886 280 --RELDLSGNSLSNALPLI 296 (394)
T ss_pred --CEEeccCccccccchhh
Confidence 78999999888665443
No 34
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.58 E-value=3.2e-08 Score=92.25 Aligned_cols=80 Identities=19% Similarity=0.212 Sum_probs=15.5
Q ss_pred CCCCcEEeccCCCCCcccCCCCC-CCCCCCEEeccCCCCCcccCcCcCCCCCCCEEeccCcccccCCccccCCcCCceEE
Q 047161 495 LTGLVFLNLNDCKILVRLPSTIN-GWKSLRTVNLSRCSKLENMPESLGQMESLEELDVSGTVIRQPVPSIFFPSRILKVY 573 (720)
Q Consensus 495 l~~L~~L~Ls~n~~~~~lp~~i~-~l~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L 573 (720)
..+++.|+|++|.+ ..+ +.++ .+.+|+.|++++|. +..++ .+..++.|++|++++|.++.+.+.....+++|+.|
T Consensus 18 ~~~~~~L~L~~n~I-~~I-e~L~~~l~~L~~L~Ls~N~-I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L 93 (175)
T PF14580_consen 18 PVKLRELNLRGNQI-STI-ENLGATLDKLEVLDLSNNQ-ITKLE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQEL 93 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS---S--T-T----TT--EEE--SS---S-CHHHHHH-TT--EE
T ss_pred cccccccccccccc-ccc-cchhhhhcCCCEEECCCCC-Ccccc-CccChhhhhhcccCCCCCCccccchHHhCCcCCEE
Confidence 33455555555542 222 2233 34455555555543 22232 34445555555555555554433222222444444
Q ss_pred EeecC
Q 047161 574 LFVDT 578 (720)
Q Consensus 574 ~l~~~ 578 (720)
.+.+|
T Consensus 94 ~L~~N 98 (175)
T PF14580_consen 94 YLSNN 98 (175)
T ss_dssp E-TTS
T ss_pred ECcCC
Confidence 44333
No 35
>PLN03150 hypothetical protein; Provisional
Probab=98.52 E-value=1.7e-07 Score=106.74 Aligned_cols=105 Identities=29% Similarity=0.363 Sum_probs=75.6
Q ss_pred ceeeecCCCCCCCCCCCCcccCccchhhhHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCCCcccCc
Q 047161 459 LEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMPE 538 (720)
Q Consensus 459 L~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~ 538 (720)
++.|+|++|.-- ..+|.. ++.+++|+.|+|++|.+.+.+|..++.+++|++|+|++|.+.+.+|.
T Consensus 420 v~~L~L~~n~L~------g~ip~~---------i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~ 484 (623)
T PLN03150 420 IDGLGLDNQGLR------GFIPND---------ISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPE 484 (623)
T ss_pred EEEEECCCCCcc------ccCCHH---------HhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCch
Confidence 666777766511 234443 78888888888888887778888888888888888888888888888
Q ss_pred CcCCCCCCCEEeccCcccccCCccccCC-cCCceEEEeecC
Q 047161 539 SLGQMESLEELDVSGTVIRQPVPSIFFP-SRILKVYLFVDT 578 (720)
Q Consensus 539 ~~~~L~~L~~L~L~~n~l~~~~~~~~~~-~~~L~~L~l~~~ 578 (720)
.+++|++|++|+|++|.+.+..|..+.. ..++..+++.+|
T Consensus 485 ~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N 525 (623)
T PLN03150 485 SLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDN 525 (623)
T ss_pred HHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCC
Confidence 8888888888888888888765544322 234455555444
No 36
>PLN03150 hypothetical protein; Provisional
Probab=98.51 E-value=1.8e-07 Score=106.52 Aligned_cols=83 Identities=27% Similarity=0.316 Sum_probs=61.0
Q ss_pred CCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCCCcccCcCcCCCCCCCEEeccCcccccCCccccCCcCCceEEEee
Q 047161 497 GLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMPESLGQMESLEELDVSGTVIRQPVPSIFFPSRILKVYLFV 576 (720)
Q Consensus 497 ~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~ 576 (720)
.++.|+|++|.+.+.+|..++++++|+.|+|++|.+.+.+|..++.+++|+.|+|++|.+.+.+|..+..+++|+.|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 36778888888777888888888888888888887777888778888888888888888877666544444555555554
Q ss_pred cCC
Q 047161 577 DTR 579 (720)
Q Consensus 577 ~~~ 579 (720)
+|.
T Consensus 499 ~N~ 501 (623)
T PLN03150 499 GNS 501 (623)
T ss_pred CCc
Confidence 443
No 37
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.50 E-value=2.4e-08 Score=101.81 Aligned_cols=31 Identities=29% Similarity=0.464 Sum_probs=18.2
Q ss_pred cEEECCCCCCcccc--ccccCCCCCceeecccc
Q 047161 624 KKLNLRRNNFVSLR--GTINHLPKFKHLKLDDC 654 (720)
Q Consensus 624 ~~L~Ls~n~l~~lp--~~i~~l~~L~~L~L~~c 654 (720)
++|+++.|++..++ ..+..+++|+.|.+..+
T Consensus 304 ~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n 336 (505)
T KOG3207|consen 304 EYLNISENNIRDWRSLNHLRTLENLKHLRITLN 336 (505)
T ss_pred eeeecccCccccccccchhhccchhhhhhcccc
Confidence 66677777766555 23445566666665444
No 38
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.47 E-value=2.9e-08 Score=101.27 Aligned_cols=201 Identities=17% Similarity=0.205 Sum_probs=122.9
Q ss_pred CCCCCceeeecCCCCCCCCCCCCcccCccchhhhHHHHhccCCCCcEEeccCCCCCcc--cCCCCCCCCCCCEEeccCCC
Q 047161 454 TGAPNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILVR--LPSTINGWKSLRTVNLSRCS 531 (720)
Q Consensus 454 ~~l~~L~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~--lp~~i~~l~~L~~L~L~~~~ 531 (720)
++++.|+...|.++. +...+.+ .....+++++.|||++|-+... +-.-...|++|+.|+|+.|.
T Consensus 118 sn~kkL~~IsLdn~~-------V~~~~~~-------~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nr 183 (505)
T KOG3207|consen 118 SNLKKLREISLDNYR-------VEDAGIE-------EYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNR 183 (505)
T ss_pred hhHHhhhheeecCcc-------ccccchh-------hhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhccccccc
Confidence 567778888888776 2222221 1166788888999988754322 22233568888888888886
Q ss_pred CCcccCcC-cCCCCCCCEEeccCcccccC-CccccCCcCCceEEEeecCCCCCCCCCcccccccccccccCCCCccccc-
Q 047161 532 KLENMPES-LGQMESLEELDVSGTVIRQP-VPSIFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALM- 608 (720)
Q Consensus 532 ~l~~lp~~-~~~L~~L~~L~L~~n~l~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~- 608 (720)
+..-.... -..+++|+.|.|+.|.++.- ...+...+++|..|.+..|...........-+..++.|+++.++..+..
T Consensus 184 l~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~ 263 (505)
T KOG3207|consen 184 LSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQ 263 (505)
T ss_pred ccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccccccc
Confidence 54322211 23567788888888877632 1223333578888888877644445555566677788888877766543
Q ss_pred CCCCCCCCCCCcccccEEECCCCCCccc--ccc-----ccCCCCCceeecccccc--ccccCCcc--cccceEeee
Q 047161 609 LPSLSGLCSLTELNLKKLNLRRNNFVSL--RGT-----INHLPKFKHLKLDDCKR--LRSLSELP--SDIKKVRVH 673 (720)
Q Consensus 609 ~~~l~~l~~L~~L~L~~L~Ls~n~l~~l--p~~-----i~~l~~L~~L~L~~c~~--L~~lp~lp--~~L~~L~l~ 673 (720)
.+..+.++.| ..|+++.+.+.++ |+. ...+++|++|++..|+- +.++..+- ++|+.|.+.
T Consensus 264 ~~~~~~l~~L-----~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~ 334 (505)
T KOG3207|consen 264 GYKVGTLPGL-----NQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRIT 334 (505)
T ss_pred ccccccccch-----hhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcc
Confidence 2335666665 4556666766643 433 35688888888888863 33333222 345555543
No 39
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.43 E-value=2.7e-08 Score=96.46 Aligned_cols=128 Identities=23% Similarity=0.308 Sum_probs=83.4
Q ss_pred ccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCCCcccCcCcCCCCCCCEEeccCcccccCCccccCCcCCceE
Q 047161 493 ELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMPESLGQMESLEELDVSGTVIRQPVPSIFFPSRILKV 572 (720)
Q Consensus 493 ~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~~ 572 (720)
...+.|+.||||+|. +..+.+++.-++.++.|++|+|.+.. + ..+..|++|++|||++|.+.....-...+ .+.++
T Consensus 281 dTWq~LtelDLS~N~-I~~iDESvKL~Pkir~L~lS~N~i~~-v-~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KL-GNIKt 356 (490)
T KOG1259|consen 281 DTWQELTELDLSGNL-ITQIDESVKLAPKLRRLILSQNRIRT-V-QNLAELPQLQLLDLSGNLLAECVGWHLKL-GNIKT 356 (490)
T ss_pred chHhhhhhccccccc-hhhhhhhhhhccceeEEeccccceee-e-hhhhhcccceEeecccchhHhhhhhHhhh-cCEee
Confidence 335567777777776 56667777667777777777775433 2 23666777777777777665543322222 56666
Q ss_pred EEeecCCCCCCCCCcccccccccccccCCCCcccccCCCCCCCCCCCcccccEEECCCCCCcccc--ccccCCCCCceee
Q 047161 573 YLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSLSGLCSLTELNLKKLNLRRNNFVSLR--GTINHLPKFKHLK 650 (720)
Q Consensus 573 L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~L~Ls~n~l~~lp--~~i~~l~~L~~L~ 650 (720)
|.++.|.+ ..++++..|- +|..||+++|++..+. ..|+++|.|+.+.
T Consensus 357 L~La~N~i-----------------------------E~LSGL~KLY--SLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~ 405 (490)
T KOG1259|consen 357 LKLAQNKI-----------------------------ETLSGLRKLY--SLVNLDLSSNQIEELDEVNHIGNLPCLETLR 405 (490)
T ss_pred eehhhhhH-----------------------------hhhhhhHhhh--hheeccccccchhhHHHhcccccccHHHHHh
Confidence 66644322 1233333332 3478899999988765 5789999999999
Q ss_pred ccccc
Q 047161 651 LDDCK 655 (720)
Q Consensus 651 L~~c~ 655 (720)
|.+||
T Consensus 406 L~~NP 410 (490)
T KOG1259|consen 406 LTGNP 410 (490)
T ss_pred hcCCC
Confidence 99997
No 40
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.42 E-value=2.8e-07 Score=70.34 Aligned_cols=60 Identities=23% Similarity=0.411 Sum_probs=37.1
Q ss_pred CCCcEEeccCCCCCcccC-CCCCCCCCCCEEeccCCCCCcccCcCcCCCCCCCEEeccCccc
Q 047161 496 TGLVFLNLNDCKILVRLP-STINGWKSLRTVNLSRCSKLENMPESLGQMESLEELDVSGTVI 556 (720)
Q Consensus 496 ~~L~~L~Ls~n~~~~~lp-~~i~~l~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~L~~n~l 556 (720)
++|++|++++|++ ..+| ..+.++++|++|++++|.+...-|..|..+++|++|++++|++
T Consensus 1 p~L~~L~l~~n~l-~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKL-TEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTE-SEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCC-CccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 3566677777663 3444 4556677777777776655444445666777777777776653
No 41
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.41 E-value=1.6e-06 Score=90.76 Aligned_cols=50 Identities=26% Similarity=0.656 Sum_probs=27.8
Q ss_pred CCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCCCcccCcCcCCCCCCCEEeccCc
Q 047161 497 GLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMPESLGQMESLEELDVSGT 554 (720)
Q Consensus 497 ~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~L~~n 554 (720)
+|+.|.+++|..+..+|..+ .++|++|++++|..+..+|.. |+.|+++.+
T Consensus 73 sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~s------Le~L~L~~n 122 (426)
T PRK15386 73 ELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPES------VRSLEIKGS 122 (426)
T ss_pred CCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccccc------cceEEeCCC
Confidence 46666666665555666544 246666666666555555532 444555443
No 42
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.39 E-value=1.7e-06 Score=90.44 Aligned_cols=73 Identities=25% Similarity=0.349 Sum_probs=56.9
Q ss_pred hccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCCCcccCcCcCCCCCCCEEeccCc-ccccCCccccCCcCCc
Q 047161 492 IELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMPESLGQMESLEELDVSGT-VIRQPVPSIFFPSRIL 570 (720)
Q Consensus 492 i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~L~~n-~l~~~~~~~~~~~~~L 570 (720)
+..+.+++.|++++|. +..+|. -..+|++|.+++|..+..+|..+. ++|++|++++| .+..+| .+|
T Consensus 48 ~~~~~~l~~L~Is~c~-L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP-------~sL 114 (426)
T PRK15386 48 IEEARASGRLYIKDCD-IESLPV---LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLP-------ESV 114 (426)
T ss_pred HHHhcCCCEEEeCCCC-CcccCC---CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCcccccccc-------ccc
Confidence 5667999999999996 788883 245799999999999888987663 58999999998 555444 557
Q ss_pred eEEEeec
Q 047161 571 KVYLFVD 577 (720)
Q Consensus 571 ~~L~l~~ 577 (720)
+.|.+..
T Consensus 115 e~L~L~~ 121 (426)
T PRK15386 115 RSLEIKG 121 (426)
T ss_pred ceEEeCC
Confidence 7777643
No 43
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.34 E-value=3.3e-07 Score=89.03 Aligned_cols=52 Identities=23% Similarity=0.455 Sum_probs=29.2
Q ss_pred ccEEECCCCCCccccccccCCCCCceeeccccc--c---ccccCCcccccceEeeecCc
Q 047161 623 LKKLNLRRNNFVSLRGTINHLPKFKHLKLDDCK--R---LRSLSELPSDIKKVRVHGCT 676 (720)
Q Consensus 623 L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~--~---L~~lp~lp~~L~~L~l~~c~ 676 (720)
++.|.|++|.+..+. .++.+-+|..|++++|+ + ...+..+| +|+.|.+.++|
T Consensus 354 IKtL~La~N~iE~LS-GL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LP-CLE~l~L~~NP 410 (490)
T KOG1259|consen 354 IKTLKLAQNKIETLS-GLRKLYSLVNLDLSSNQIEELDEVNHIGNLP-CLETLRLTGNP 410 (490)
T ss_pred EeeeehhhhhHhhhh-hhHhhhhheeccccccchhhHHHhccccccc-HHHHHhhcCCC
Confidence 356666777665554 45566666777777664 1 12223333 36666666655
No 44
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.33 E-value=5.4e-07 Score=68.76 Aligned_cols=60 Identities=32% Similarity=0.447 Sum_probs=52.5
Q ss_pred CCceeeecCCCCCCCCCCCCcccCccchhhhHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCC
Q 047161 457 PNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCS 531 (720)
Q Consensus 457 ~~L~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~ 531 (720)
|+|++|++++|. ++.+|... |..+++|++|++++|.+...-|..|.++++|++|++++|.
T Consensus 1 p~L~~L~l~~n~-------l~~i~~~~--------f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNK-------LTEIPPDS--------FSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSST-------ESEECTTT--------TTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCC-------CCccCHHH--------HcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 579999999997 68888765 8889999999999999766666788999999999999985
No 45
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.01 E-value=1.7e-06 Score=94.17 Aligned_cols=176 Identities=21% Similarity=0.206 Sum_probs=100.7
Q ss_pred CCCCCCceeeecCCCCCCCCCCCCcccCccchhhhHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCC
Q 047161 453 FTGAPNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSK 532 (720)
Q Consensus 453 ~~~l~~L~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~ 532 (720)
+..+++|..|++.+|. ++.+... +..+++|++|++++|.+ +.+ ..+..++.|+.|++++|.+
T Consensus 91 l~~~~~l~~l~l~~n~-------i~~i~~~---------l~~~~~L~~L~ls~N~I-~~i-~~l~~l~~L~~L~l~~N~i 152 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNK-------IEKIENL---------LSSLVNLQVLDLSFNKI-TKL-EGLSTLTLLKELNLSGNLI 152 (414)
T ss_pred cccccceeeeeccccc-------hhhcccc---------hhhhhcchheecccccc-ccc-cchhhccchhhheeccCcc
Confidence 5667777777777776 4555443 55577777777777773 333 2355667777777777743
Q ss_pred CcccCcCcCCCCCCCEEeccCcccccCCccccCCcCCceEEEeecCCCCCCCCCcccccccccccccCCCCcccccCCCC
Q 047161 533 LENMPESLGQMESLEELDVSGTVIRQPVPSIFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSL 612 (720)
Q Consensus 533 l~~lp~~~~~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~l 612 (720)
..+ ..+..+++|+.+++++|.+..+.+.....+.+++.+.+.+|....+...... ..+..+.+..+ .+..+
T Consensus 153 -~~~-~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~~~~~~--~~l~~~~l~~n-----~i~~~ 223 (414)
T KOG0531|consen 153 -SDI-SGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREIEGLDLL--KKLVLLSLLDN-----KISKL 223 (414)
T ss_pred -hhc-cCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhcccchHHH--HHHHHhhcccc-----cceec
Confidence 333 2355577777777777777766552012226666666666655443222111 11111112211 11222
Q ss_pred CCCCCCCcccccEEECCCCCCccccccccCCCCCceeeccccc
Q 047161 613 SGLCSLTELNLKKLNLRRNNFVSLRGTINHLPKFKHLKLDDCK 655 (720)
Q Consensus 613 ~~l~~L~~L~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~ 655 (720)
.++..+..+.|+.+++++|.+..++..+..+.++..|++.++.
T Consensus 224 ~~l~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~ 266 (414)
T KOG0531|consen 224 EGLNELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSNR 266 (414)
T ss_pred cCcccchhHHHHHHhcccCccccccccccccccccccchhhcc
Confidence 2333222213577788888887776667777888888887764
No 46
>PF13676 TIR_2: TIR domain; PDB: 3H16_B 3UB4_A 2Y92_A 3UB3_A 3UB2_A.
Probab=97.98 E-value=8.6e-07 Score=75.79 Aligned_cols=51 Identities=33% Similarity=0.606 Sum_probs=43.5
Q ss_pred CceEeecCCCCCCCCcccHHHHHHHHhccceeEEeccCcccchhhhhhhccc
Q 047161 1 GVKIFEDHKELERGKAVSPGLFKAIEESRFSVVVFSRNYAYSTWCLDELAKI 52 (720)
Q Consensus 1 gi~~f~d~~~l~~g~~~~~~l~~ai~~s~~~ivv~S~~ya~s~wcl~el~~i 52 (720)
|+.+|.|. ++..|+.+...+.+||++|++.|+++|++|..|.||..|+...
T Consensus 24 g~~v~~d~-~~~~g~~~~~~i~~~i~~s~~~i~~~S~~~~~s~~~~~E~~~a 74 (102)
T PF13676_consen 24 GIRVFLDR-DIPPGEDWREEIERAIERSDCVIVLLSPNYLKSPWCRFELGAA 74 (102)
T ss_dssp T--EE-GG-EE-TTS-HHCCCHHCCTTEEEEEEEEEHHHHCTHHHHHHHHHH
T ss_pred CCEEEEEE-eCCCCCCHHHHHHHHHHhCCEEEEEECcccccChHHHHHHHHH
Confidence 78999998 8999999999999999999999999999999999999999554
No 47
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.83 E-value=4.7e-07 Score=88.04 Aligned_cols=194 Identities=20% Similarity=0.208 Sum_probs=118.0
Q ss_pred CceeeecCCCCCCCCCCCCcccCccchhhhHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCCCcccC
Q 047161 458 NLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMP 537 (720)
Q Consensus 458 ~L~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp 537 (720)
.|++|||+... +...++...+..+.+|+.|.|.++.+...+-..|.+-.+|+.|+|++|+..++..
T Consensus 186 Rlq~lDLS~s~--------------it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~ 251 (419)
T KOG2120|consen 186 RLQHLDLSNSV--------------ITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENA 251 (419)
T ss_pred hhHHhhcchhh--------------eeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhH
Confidence 58889998743 1122233336778888888888888666666677778888999998887665443
Q ss_pred --cCcCCCCCCCEEeccCcccccCCcc--ccCCcCCceEEEeecCCCCCCCCCcccccccccccccCCCCcccccCCC-C
Q 047161 538 --ESLGQMESLEELDVSGTVIRQPVPS--IFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPS-L 612 (720)
Q Consensus 538 --~~~~~L~~L~~L~L~~n~l~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~-l 612 (720)
-.+.+++.|..|+|+-|.+....-. +..-..+|..|+++++.-+- ....+.. .
T Consensus 252 ~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl----------------------~~sh~~tL~ 309 (419)
T KOG2120|consen 252 LQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNL----------------------QKSHLSTLV 309 (419)
T ss_pred HHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhh----------------------hhhHHHHHH
Confidence 2366788888888888865432211 11112567777775442111 0001111 1
Q ss_pred CCCCCCCcccccEEECCCCC-Cc-cccccccCCCCCceeeccccccc-----cccCCcccccceEeeecCcccccchhhc
Q 047161 613 SGLCSLTELNLKKLNLRRNN-FV-SLRGTINHLPKFKHLKLDDCKRL-----RSLSELPSDIKKVRVHGCTSLATISDAL 685 (720)
Q Consensus 613 ~~l~~L~~L~L~~L~Ls~n~-l~-~lp~~i~~l~~L~~L~L~~c~~L-----~~lp~lp~~L~~L~l~~c~~L~~lp~~~ 685 (720)
..+++| .+||||+|. ++ ..-..+..++.|++|.++.|-.+ -.+... |+|.+|++.||-.=+.+--..
T Consensus 310 ~rcp~l-----~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~-psl~yLdv~g~vsdt~mel~~ 383 (419)
T KOG2120|consen 310 RRCPNL-----VHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSK-PSLVYLDVFGCVSDTTMELLK 383 (419)
T ss_pred HhCCce-----eeeccccccccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccC-cceEEEEeccccCchHHHHHH
Confidence 234444 678888874 32 22234578999999999999643 112222 569999999987654444333
Q ss_pred cCchhHhh
Q 047161 686 RSCNSATS 693 (720)
Q Consensus 686 ~~~~~L~~ 693 (720)
..|++|+.
T Consensus 384 e~~~~lki 391 (419)
T KOG2120|consen 384 EMLSHLKI 391 (419)
T ss_pred HhCccccc
Confidence 44555544
No 48
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.79 E-value=6.5e-07 Score=96.84 Aligned_cols=173 Identities=23% Similarity=0.315 Sum_probs=107.3
Q ss_pred hhccCCcceEEEeccccC--CcccCccccceEEEecCC----------CCCCCCCCCCCCcceEeeCCCCchhHHhhhcc
Q 047161 378 FLKMTNLRLLKIHNLQLP--AGLESLSDELRLLQWHGY----------PLKSLPSSMEMDKTLECNMCYRRIEQFWKGIK 445 (720)
Q Consensus 378 ~~~l~~L~~L~l~~~~l~--~~~~~l~~~l~~L~~~~~----------~~~~lp~~~~~~~l~~L~l~~~~i~~l~~~~~ 445 (720)
+.....|+.|.+.++.+. .++..+...+..|..++. ....+.+.+.+..+...+.++|.+..+...
T Consensus 105 ifpF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~~mD~S-- 182 (1096)
T KOG1859|consen 105 IFPFRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLVLMDES-- 182 (1096)
T ss_pred eccccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHHhHHHH--
Confidence 445667777777776553 222222223333322211 122444455566777777777777655432
Q ss_pred CccccCCCCCCCCceeeecCCCCCCCCCCCCcccCccchhhhHHHHhccCCCCcEEeccCCCCCcccCC-CCCCCCCCCE
Q 047161 446 NLIRTPDFTGAPNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILVRLPS-TINGWKSLRT 524 (720)
Q Consensus 446 ~l~~~~~~~~l~~L~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~-~i~~l~~L~~ 524 (720)
+.-++.|+.|+|++|+ ++.+. + +..+++|++|||++|. +..+|. +...+. |+.
T Consensus 183 -------Lqll~ale~LnLshNk-------~~~v~-~---------Lr~l~~LkhLDlsyN~-L~~vp~l~~~gc~-L~~ 236 (1096)
T KOG1859|consen 183 -------LQLLPALESLNLSHNK-------FTKVD-N---------LRRLPKLKHLDLSYNC-LRHVPQLSMVGCK-LQL 236 (1096)
T ss_pred -------HHHHHHhhhhccchhh-------hhhhH-H---------HHhcccccccccccch-hccccccchhhhh-hee
Confidence 4556788999999987 34444 2 7778889999999988 566664 223344 889
Q ss_pred EeccCCCCCcccCcCcCCCCCCCEEeccCcccccCCc-cccCCcCCceEEEeecCCC
Q 047161 525 VNLSRCSKLENMPESLGQMESLEELDVSGTVIRQPVP-SIFFPSRILKVYLFVDTRD 580 (720)
Q Consensus 525 L~L~~~~~l~~lp~~~~~L~~L~~L~L~~n~l~~~~~-~~~~~~~~L~~L~l~~~~~ 580 (720)
|++++|. +.++ ..+.+|.+|+.||+++|-+.+.-. .....+..|+.|.+.+|.+
T Consensus 237 L~lrnN~-l~tL-~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 237 LNLRNNA-LTTL-RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred eeecccH-HHhh-hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 9998874 4444 357888999999999987765321 1112236777777776654
No 49
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=97.77 E-value=0.00039 Score=69.21 Aligned_cols=169 Identities=18% Similarity=0.193 Sum_probs=81.4
Q ss_pred ccccchhHHHHHHhhhccCCCeEEEEEecCCCccccc----------------------hhcHHHHHHHH----------
Q 047161 130 LVEMNSRLKKLRLLLDAESRDVRMIGICGMGGVELSE----------------------KDGLIALQKQL---------- 177 (720)
Q Consensus 130 ~vG~~~~~~~i~~~L~~~~~~~~vi~I~G~gGi~vs~----------------------~~~~~~~~~~i---------- 177 (720)
++||++++++|.+.+.. +..+.+.|+|..|++.|. ..........+
T Consensus 1 F~gR~~el~~l~~~l~~--~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~l 78 (234)
T PF01637_consen 1 FFGREKELEKLKELLES--GPSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSFIEETSLADEL 78 (234)
T ss_dssp S-S-HHHHHHHHHCHHH----SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHHHHHHHHHCHC
T ss_pred CCCHHHHHHHHHHHHHh--hcCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHHHHHHHHHHHH
Confidence 68999999999998854 335667789999981110 00111111111
Q ss_pred HHhhh---hcccc------eeccchhhHHHHHHHHh--cCCeEEEEecCCcHH-----------HHHHHhccCCCCCCCC
Q 047161 178 LSKTL---MEIDI------EIRNDFDGIKMIKRELR--RRNVLVVIDDAVHIR-----------QLNRLAGKHSWFGSGS 235 (720)
Q Consensus 178 l~~~~---~~~~~------~~~~~~~~~~~l~~~l~--~kr~LlVLDdv~~~~-----------~~~~l~~~~~~~~~gs 235 (720)
...+. ..... ...........+-+.+. +++++||+||+.... .+..+........+.+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 158 (234)
T PF01637_consen 79 SEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNVS 158 (234)
T ss_dssp HHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTEE
T ss_pred HHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCce
Confidence 11110 00000 00122233344444443 456999999987554 1223333322233344
Q ss_pred eEEEEcCChhhhhh--------ccccceEecCCCCHHHHHHHHHHHhcCC-CCCchHHHHHHHHHHHhCCCchHHH
Q 047161 236 RIIIPTRDEHLLRT--------LRVDGVYKVEKLDDDEALELFNKRAFDG-QPSKDYVELIKRIVKYADGLPFALE 302 (720)
Q Consensus 236 rIivTTR~~~v~~~--------~~~~~~~~l~~L~~~~s~~Lf~~~af~~-~~~~~~~~~~~~i~~~c~glPLai~ 302 (720)
.| +++....+... .+-...+.+++++.+++++++...+-.. .. +.-.+..++|...+||.|..|.
T Consensus 159 ~v-~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~gG~P~~l~ 232 (234)
T PF01637_consen 159 IV-ITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKELIKL-PFSDEDIEEIYSLTGGNPRYLQ 232 (234)
T ss_dssp EE-EEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC-------HHHHHHHHHHHTT-HHHHH
T ss_pred EE-EECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHhhcc-cCCHHHHHHHHHHhCCCHHHHh
Confidence 44 44444444433 1223359999999999999998864332 11 1123445889999999998775
No 50
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.71 E-value=9.1e-06 Score=81.22 Aligned_cols=82 Identities=21% Similarity=0.322 Sum_probs=52.8
Q ss_pred CCCCCCCCcccccEEECCCCCCc-----cccccccCCCCCceeecccccccccc---------CCcccccceEeeecCcc
Q 047161 612 LSGLCSLTELNLKKLNLRRNNFV-----SLRGTINHLPKFKHLKLDDCKRLRSL---------SELPSDIKKVRVHGCTS 677 (720)
Q Consensus 612 l~~l~~L~~L~L~~L~Ls~n~l~-----~lp~~i~~l~~L~~L~L~~c~~L~~l---------p~lp~~L~~L~l~~c~~ 677 (720)
+..+++| +.|||.+|.|+ .+...++.+++|+.|++++|- ++.= ....|+|+.|.+.+|.-
T Consensus 209 l~~~~~L-----evLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcl-l~~~Ga~a~~~al~~~~p~L~vl~l~gNeI 282 (382)
T KOG1909|consen 209 LEHCPHL-----EVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCL-LENEGAIAFVDALKESAPSLEVLELAGNEI 282 (382)
T ss_pred HHhCCcc-----eeeecccchhhhHHHHHHHHHhcccchheeecccccc-cccccHHHHHHHHhccCCCCceeccCcchh
Confidence 5667766 77888888776 334556778899999999994 3322 22335688888888753
Q ss_pred ccc----chhhccCchhHhhhhhhcc
Q 047161 678 LAT----ISDALRSCNSATSRIFCIN 699 (720)
Q Consensus 678 L~~----lp~~~~~~~~L~~l~~~~n 699 (720)
-.. +-..+...+.|..|++..|
T Consensus 283 t~da~~~la~~~~ek~dL~kLnLngN 308 (382)
T KOG1909|consen 283 TRDAALALAACMAEKPDLEKLNLNGN 308 (382)
T ss_pred HHHHHHHHHHHHhcchhhHHhcCCcc
Confidence 211 1123344677777777665
No 51
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.66 E-value=1.1e-06 Score=95.23 Aligned_cols=82 Identities=17% Similarity=0.182 Sum_probs=57.5
Q ss_pred CCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCCCcccCcCcCCCCCCCEEeccCcccccCCccccCCcCCceEEEee
Q 047161 497 GLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMPESLGQMESLEELDVSGTVIRQPVPSIFFPSRILKVYLFV 576 (720)
Q Consensus 497 ~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~ 576 (720)
.|.+.+.++|. +..+.+++.-++.|+.|||++|.+... +.+..|+.|.+|||++|.+..+|.-.... ..|+.|.+.
T Consensus 165 ~L~~a~fsyN~-L~~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~g-c~L~~L~lr 240 (1096)
T KOG1859|consen 165 KLATASFSYNR-LVLMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVG-CKLQLLNLR 240 (1096)
T ss_pred hHhhhhcchhh-HHhHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhccccccchhh-hhheeeeec
Confidence 56667777776 566677777788888888888765442 26777888888888888887776544444 447888876
Q ss_pred cCCCCC
Q 047161 577 DTRDHR 582 (720)
Q Consensus 577 ~~~~~~ 582 (720)
+|.+..
T Consensus 241 nN~l~t 246 (1096)
T KOG1859|consen 241 NNALTT 246 (1096)
T ss_pred ccHHHh
Confidence 665443
No 52
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.60 E-value=1.7e-05 Score=79.41 Aligned_cols=116 Identities=25% Similarity=0.347 Sum_probs=66.4
Q ss_pred CCCCCCceeeecCCCCCCCCCCCCcccCccchhhhHHHHhccCCCCcEEeccCCCCCc----ccCCCCCCCCCCCEEecc
Q 047161 453 FTGAPNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILV----RLPSTINGWKSLRTVNLS 528 (720)
Q Consensus 453 ~~~l~~L~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~----~lp~~i~~l~~L~~L~L~ 528 (720)
|...+.|+.+.++.|.- -|... ..+...+.++++|+.|||++|.+.. .+...++.+++|+.|+++
T Consensus 181 ~~~~~~leevr~~qN~I---------~~eG~--~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~ 249 (382)
T KOG1909|consen 181 FQSHPTLEEVRLSQNGI---------RPEGV--TALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLG 249 (382)
T ss_pred HHhccccceEEEecccc---------cCchh--HHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccc
Confidence 44556777777777651 11111 2233347778888888888877543 233445567788888888
Q ss_pred CCCCCcccCc----Cc-CCCCCCCEEeccCcccccCC-----ccccCCcCCceEEEeecCCC
Q 047161 529 RCSKLENMPE----SL-GQMESLEELDVSGTVIRQPV-----PSIFFPSRILKVYLFVDTRD 580 (720)
Q Consensus 529 ~~~~l~~lp~----~~-~~L~~L~~L~L~~n~l~~~~-----~~~~~~~~~L~~L~l~~~~~ 580 (720)
+|.....-.. .+ ...++|+.|.+.+|.++.-- ..... .+.|..|.+.+|++
T Consensus 250 dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~e-k~dL~kLnLngN~l 310 (382)
T KOG1909|consen 250 DCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAE-KPDLEKLNLNGNRL 310 (382)
T ss_pred ccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhc-chhhHHhcCCcccc
Confidence 8754332111 11 23567888888887765421 11112 26677777766665
No 53
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=97.59 E-value=0.0017 Score=70.49 Aligned_cols=198 Identities=16% Similarity=0.111 Sum_probs=112.6
Q ss_pred CCCCCccccchhHHHHHHhhhcc--CCCeEEEEEecCCCccccc-------------------------hhcHHHHHHHH
Q 047161 125 GILDDLVEMNSRLKKLRLLLDAE--SRDVRMIGICGMGGVELSE-------------------------KDGLIALQKQL 177 (720)
Q Consensus 125 ~~~~~~vG~~~~~~~i~~~L~~~--~~~~~vi~I~G~gGi~vs~-------------------------~~~~~~~~~~i 177 (720)
..++.++||++++++|...+... ......+-|+|..|++.+. ..+...+..++
T Consensus 27 ~~P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i 106 (394)
T PRK00411 27 YVPENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEI 106 (394)
T ss_pred CcCCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHH
Confidence 35678999999999999888432 2334456799999992111 12233455566
Q ss_pred HHhhhhcccc-eeccchhhHHHHHHHHh--cCCeEEEEecCCcHH------HHHHHhccCCCCCCCCe--EEEEcCChhh
Q 047161 178 LSKTLMEIDI-EIRNDFDGIKMIKRELR--RRNVLVVIDDAVHIR------QLNRLAGKHSWFGSGSR--IIIPTRDEHL 246 (720)
Q Consensus 178 l~~~~~~~~~-~~~~~~~~~~~l~~~l~--~kr~LlVLDdv~~~~------~~~~l~~~~~~~~~gsr--IivTTR~~~v 246 (720)
+.++...... ...+..+....+.+.++ ++..+||||+++... .+..+...... .++++ ||.++.+..+
T Consensus 107 ~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~-~~~~~v~vI~i~~~~~~ 185 (394)
T PRK00411 107 ARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEE-YPGARIGVIGISSDLTF 185 (394)
T ss_pred HHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhc-cCCCeEEEEEEECCcch
Confidence 6664321111 11233455566667665 456899999998753 24444433222 23444 6667666544
Q ss_pred hhhcc-------ccceEecCCCCHHHHHHHHHHHh---cCC-CCC-chHHHHHHHHHHHhCCCchHHHHhhhhc-----c
Q 047161 247 LRTLR-------VDGVYKVEKLDDDEALELFNKRA---FDG-QPS-KDYVELIKRIVKYADGLPFALETLGSVL-----F 309 (720)
Q Consensus 247 ~~~~~-------~~~~~~l~~L~~~~s~~Lf~~~a---f~~-~~~-~~~~~~~~~i~~~c~glPLai~~~g~~l-----~ 309 (720)
..... ....+.+++.+.++..+++..++ |.. ... ..++.+++.+....|..+.|+..+-.+. +
T Consensus 186 ~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~ 265 (394)
T PRK00411 186 LYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAERE 265 (394)
T ss_pred hhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHc
Confidence 33221 12367899999999999998775 322 222 2233333434333566777777654322 1
Q ss_pred C---CCHHHHHHHHhhh
Q 047161 310 G---RSVDGWRSTLERL 323 (720)
Q Consensus 310 ~---k~~~~W~~~l~~l 323 (720)
+ -+.+..+.+++++
T Consensus 266 ~~~~I~~~~v~~a~~~~ 282 (394)
T PRK00411 266 GSRKVTEEDVRKAYEKS 282 (394)
T ss_pred CCCCcCHHHHHHHHHHH
Confidence 1 1556666666544
No 54
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.58 E-value=6.5e-05 Score=52.54 Aligned_cols=41 Identities=29% Similarity=0.560 Sum_probs=33.6
Q ss_pred cccEEECCCCCCccccccccCCCCCceeeccccccccccCCc
Q 047161 622 NLKKLNLRRNNFVSLRGTINHLPKFKHLKLDDCKRLRSLSEL 663 (720)
Q Consensus 622 ~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~l 663 (720)
+|++|++++|+++.+|..+++|++|+.|++++|+ +++++.+
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~-i~~i~~l 42 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNP-ISDISPL 42 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSC-CSBEGGG
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCC-CCCCcCC
Confidence 3588999999999999889999999999999994 6665544
No 55
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.54 E-value=1.8e-05 Score=86.07 Aligned_cols=59 Identities=14% Similarity=0.208 Sum_probs=27.2
Q ss_pred cCCcceEEEeccccCCccc--CccccceEEEecCCCCCCCCC-CCCCCcceEeeCCCCchhH
Q 047161 381 MTNLRLLKIHNLQLPAGLE--SLSDELRLLQWHGYPLKSLPS-SMEMDKTLECNMCYRRIEQ 439 (720)
Q Consensus 381 l~~L~~L~l~~~~l~~~~~--~l~~~l~~L~~~~~~~~~lp~-~~~~~~l~~L~l~~~~i~~ 439 (720)
+..++.+.+..|.+..... .....+..+++.+|.+..+.. .-...++..|++++|.|..
T Consensus 71 l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~ 132 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITK 132 (414)
T ss_pred hHhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheecccccccc
Confidence 3444444555555543111 112345666666666665554 2223444444444444443
No 56
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.49 E-value=9e-05 Score=51.82 Aligned_cols=34 Identities=29% Similarity=0.465 Sum_probs=16.1
Q ss_pred CCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCC
Q 047161 497 GLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCS 531 (720)
Q Consensus 497 ~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~ 531 (720)
+|++|++++|. +..+|..+++|++|++|++++|.
T Consensus 2 ~L~~L~l~~N~-i~~l~~~l~~l~~L~~L~l~~N~ 35 (44)
T PF12799_consen 2 NLEELDLSNNQ-ITDLPPELSNLPNLETLNLSNNP 35 (44)
T ss_dssp T-SEEEETSSS--SSHGGHGTTCTTSSEEEETSSC
T ss_pred cceEEEccCCC-CcccCchHhCCCCCCEEEecCCC
Confidence 45555555554 23444445555555555555543
No 57
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=97.47 E-value=0.0083 Score=61.21 Aligned_cols=104 Identities=19% Similarity=0.265 Sum_probs=66.9
Q ss_pred hcCCeEEEEecCCcH--HHHHHHhccCCC---CCCCCeEEEEcCChhhhhhc----------cccceEecCCCCHHHHHH
Q 047161 204 RRRNVLVVIDDAVHI--RQLNRLAGKHSW---FGSGSRIIIPTRDEHLLRTL----------RVDGVYKVEKLDDDEALE 268 (720)
Q Consensus 204 ~~kr~LlVLDdv~~~--~~~~~l~~~~~~---~~~gsrIivTTR~~~v~~~~----------~~~~~~~l~~L~~~~s~~ 268 (720)
.++++++|+||++.. ..++.+...... ......|++|... .....+ .....+++++++.+|..+
T Consensus 121 ~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~-~~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e~~~ 199 (269)
T TIGR03015 121 AGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQP-EFRETLQSPQLQQLRQRIIASCHLGPLDREETRE 199 (269)
T ss_pred CCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCH-HHHHHHcCchhHHHHhheeeeeeCCCCCHHHHHH
Confidence 578899999999874 346665532221 1122244555543 222111 123467899999999999
Q ss_pred HHHHHhcCC--CCC-chHHHHHHHHHHHhCCCchHHHHhhhhc
Q 047161 269 LFNKRAFDG--QPS-KDYVELIKRIVKYADGLPFALETLGSVL 308 (720)
Q Consensus 269 Lf~~~af~~--~~~-~~~~~~~~~i~~~c~glPLai~~~g~~l 308 (720)
++...+-.. ... .--.+..+.|++.++|.|..+..++..+
T Consensus 200 ~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 200 YIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 888765322 111 1124677889999999999999888776
No 58
>PRK06893 DNA replication initiation factor; Validated
Probab=97.43 E-value=0.002 Score=63.81 Aligned_cols=141 Identities=17% Similarity=0.201 Sum_probs=82.7
Q ss_pred eEEEEEecCCCccccchhcHHHHHHHHHHhhhhcc-cceeccc---hhhHHHHHHHHhcCCeEEEEecCCcH---HHHH-
Q 047161 151 VRMIGICGMGGVELSEKDGLIALQKQLLSKTLMEI-DIEIRND---FDGIKMIKRELRRRNVLVVIDDAVHI---RQLN- 222 (720)
Q Consensus 151 ~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~~-~~~~~~~---~~~~~~l~~~l~~kr~LlVLDdv~~~---~~~~- 222 (720)
.+.+.|||..|+ +..++...+..++.... .....+. ......+.+.++ +.-+||+||+|.. .+|+
T Consensus 39 ~~~l~l~G~~G~------GKThL~~ai~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~-~~dlLilDDi~~~~~~~~~~~ 111 (229)
T PRK06893 39 QPFFYIWGGKSS------GKSHLLKAVSNHYLLNQRTAIYIPLSKSQYFSPAVLENLE-QQDLVCLDDLQAVIGNEEWEL 111 (229)
T ss_pred CCeEEEECCCCC------CHHHHHHHHHHHHHHcCCCeEEeeHHHhhhhhHHHHhhcc-cCCEEEEeChhhhcCChHHHH
Confidence 356889999999 55566666665532211 1111111 111222333333 3358999999963 4455
Q ss_pred HHhccCCCC-CCCCeEEEEcCC----------hhhhhhccccceEecCCCCHHHHHHHHHHHhcCC--CCCchHHHHHHH
Q 047161 223 RLAGKHSWF-GSGSRIIIPTRD----------EHLLRTLRVDGVYKVEKLDDDEALELFNKRAFDG--QPSKDYVELIKR 289 (720)
Q Consensus 223 ~l~~~~~~~-~~gsrIivTTR~----------~~v~~~~~~~~~~~l~~L~~~~s~~Lf~~~af~~--~~~~~~~~~~~~ 289 (720)
.+...+... ..|+.|||||.+ +.+...++....+++++++.++.++++.++++.. ..+ ++...-
T Consensus 112 ~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~l~l~---~~v~~~ 188 (229)
T PRK06893 112 AIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRGIELS---DEVANF 188 (229)
T ss_pred HHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHH
Confidence 233323222 246666555443 4677777767799999999999999999999754 222 234455
Q ss_pred HHHHhCCCchHH
Q 047161 290 IVKYADGLPFAL 301 (720)
Q Consensus 290 i~~~c~glPLai 301 (720)
+++.+.|-.-++
T Consensus 189 L~~~~~~d~r~l 200 (229)
T PRK06893 189 LLKRLDRDMHTL 200 (229)
T ss_pred HHHhccCCHHHH
Confidence 666676654433
No 59
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.28 E-value=1.6e-05 Score=81.28 Aligned_cols=248 Identities=20% Similarity=0.326 Sum_probs=119.8
Q ss_pred CCCCCceeeecCCCCCC---------CCCCCCcccC----ccchhhhHHHHhccCCCCcEEeccCCCCCcc--cCCCCCC
Q 047161 454 TGAPNLEELILDGCKRL---------QNCTSLTTLP----REIATESLQKLIELLTGLVFLNLNDCKILVR--LPSTING 518 (720)
Q Consensus 454 ~~l~~L~~L~L~~~~~l---------~~~~~L~~lp----~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~--lp~~i~~ 518 (720)
..++++++|.+.+|..+ ..|++++.+. .++....+......+++|.||++++|..+.. +-.-..+
T Consensus 161 ~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG 240 (483)
T KOG4341|consen 161 SNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRG 240 (483)
T ss_pred hhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhcc
Confidence 34566666666666533 1233333321 1122223333456688888888888864432 1122345
Q ss_pred CCCCCEEeccCCCCCcc--cCcCcCCCCCCCEEeccCcccccCC--ccccCCcCCceEEEeecCCCCCCCCCcc----cc
Q 047161 519 WKSLRTVNLSRCSKLEN--MPESLGQMESLEELDVSGTVIRQPV--PSIFFPSRILKVYLFVDTRDHRTSSSSW----HL 590 (720)
Q Consensus 519 l~~L~~L~L~~~~~l~~--lp~~~~~L~~L~~L~L~~n~l~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~----~~ 590 (720)
+..++.+.+.||...+. +-..-+.+..+-.+++.+|...... -.+...+..|+.|+.+++... ....+ ..
T Consensus 241 ~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~--~d~~l~aLg~~ 318 (483)
T KOG4341|consen 241 CKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDI--TDEVLWALGQH 318 (483)
T ss_pred chhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCC--chHHHHHHhcC
Confidence 56666776667643321 1011122333444444444221111 111222345555555444321 11110 01
Q ss_pred cccccccccCCC-CcccccCCCC-CCCCCCCcccccEEECCCCCCc---cccccccCCCCCceeecccccccccc-----
Q 047161 591 WFPFSLMQKGSS-DSMALMLPSL-SGLCSLTELNLKKLNLRRNNFV---SLRGTINHLPKFKHLKLDDCKRLRSL----- 660 (720)
Q Consensus 591 l~~l~~l~l~~~-~~~~~~~~~l-~~l~~L~~L~L~~L~Ls~n~l~---~lp~~i~~l~~L~~L~L~~c~~L~~l----- 660 (720)
..+|+.+.+... .+.+..+..+ .+.+.| +.+++.++... ++-.--.+++.|+.|.|++|.....-
T Consensus 319 ~~~L~~l~l~~c~~fsd~~ft~l~rn~~~L-----e~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l 393 (483)
T KOG4341|consen 319 CHNLQVLELSGCQQFSDRGFTMLGRNCPHL-----ERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHL 393 (483)
T ss_pred CCceEEEeccccchhhhhhhhhhhcCChhh-----hhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhh
Confidence 122222222211 1112222222 233444 45555554322 12222357889999999998754443
Q ss_pred CC---cccccceEeeecCcccccch-hhccCchhHhhhhhhcccchhHHHHHh
Q 047161 661 SE---LPSDIKKVRVHGCTSLATIS-DALRSCNSATSRIFCINCPKLILNWLQ 709 (720)
Q Consensus 661 p~---lp~~L~~L~l~~c~~L~~lp-~~~~~~~~L~~l~~~~nc~~l~~~w~~ 709 (720)
.. --..|+.|.+.+|+.+..-- ..+..|++|+. ...+.|...++..+.
T Consensus 394 ~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Ler-i~l~~~q~vtk~~i~ 445 (483)
T KOG4341|consen 394 SSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLER-IELIDCQDVTKEAIS 445 (483)
T ss_pred hhccccccccceeeecCCCCchHHHHHHHhhCcccce-eeeechhhhhhhhhH
Confidence 11 12468889999999875544 56777888888 555578887766554
No 60
>PF05729 NACHT: NACHT domain
Probab=97.17 E-value=0.0018 Score=60.55 Aligned_cols=70 Identities=19% Similarity=0.376 Sum_probs=49.5
Q ss_pred hcCCeEEEEecCCcHHH---------HHHHh-ccCCC-CCCCCeEEEEcCChhh---hhhccccceEecCCCCHHHHHHH
Q 047161 204 RRRNVLVVIDDAVHIRQ---------LNRLA-GKHSW-FGSGSRIIIPTRDEHL---LRTLRVDGVYKVEKLDDDEALEL 269 (720)
Q Consensus 204 ~~kr~LlVLDdv~~~~~---------~~~l~-~~~~~-~~~gsrIivTTR~~~v---~~~~~~~~~~~l~~L~~~~s~~L 269 (720)
+.+++++|+|++++... +..+. .-+.. ..++.+||||||.... .........++++++++++..++
T Consensus 79 ~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 158 (166)
T PF05729_consen 79 KNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEEDIKQY 158 (166)
T ss_pred cCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHHHHHH
Confidence 57899999999986432 22222 22221 2468999999998766 33344456899999999999999
Q ss_pred HHHH
Q 047161 270 FNKR 273 (720)
Q Consensus 270 f~~~ 273 (720)
+.+.
T Consensus 159 ~~~~ 162 (166)
T PF05729_consen 159 LRKY 162 (166)
T ss_pred HHHH
Confidence 8664
No 61
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=97.08 E-value=0.0069 Score=63.08 Aligned_cols=171 Identities=15% Similarity=0.093 Sum_probs=97.5
Q ss_pred CCccccchhHHHHHHhhhcc---CCCeEEEEEecCCCccccchhcHHHHHHHHHHhhhhccccee-ccchhhHHHHHHHH
Q 047161 128 DDLVEMNSRLKKLRLLLDAE---SRDVRMIGICGMGGVELSEKDGLIALQKQLLSKTLMEIDIEI-RNDFDGIKMIKREL 203 (720)
Q Consensus 128 ~~~vG~~~~~~~i~~~L~~~---~~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~~~~~~-~~~~~~~~~l~~~l 203 (720)
.++||++..++++..++... ......+-++|+.|+ +...+.+.+..++ +..-... .........+...+
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~------GKT~la~~ia~~~-~~~~~~~~~~~~~~~~~l~~~l 76 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGL------GKTTLAHIIANEM-GVNLKITSGPALEKPGDLAAIL 76 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCC------CHHHHHHHHHHHh-CCCEEEeccchhcCchhHHHHH
Confidence 46999999999998887521 233556779999999 4444555555542 2110000 00001112222222
Q ss_pred h--cCCeEEEEecCCcH--HHHHHHhccCC-------------------CCCCCCeEEEEcCChhhhhhc--cccceEec
Q 047161 204 R--RRNVLVVIDDAVHI--RQLNRLAGKHS-------------------WFGSGSRIIIPTRDEHLLRTL--RVDGVYKV 258 (720)
Q Consensus 204 ~--~kr~LlVLDdv~~~--~~~~~l~~~~~-------------------~~~~gsrIivTTR~~~v~~~~--~~~~~~~l 258 (720)
. +...++++||+... .+.+.+...+. ...+..-|..||+...+.... .....+++
T Consensus 77 ~~~~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t~~~~~l~~~l~sR~~~~~~l 156 (305)
T TIGR00635 77 TNLEEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGATTRAGMLTSPLRDRFGIILRL 156 (305)
T ss_pred HhcccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEecCCccccCHHHHhhcceEEEe
Confidence 1 35568889998743 22222222111 011245566677765543321 12347899
Q ss_pred CCCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHhCCCchHHHHhhh
Q 047161 259 EKLDDDEALELFNKRAFDGQPSKDYVELIKRIVKYADGLPFALETLGS 306 (720)
Q Consensus 259 ~~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~i~~~c~glPLai~~~g~ 306 (720)
++++.+|..+++.+.+......- -.+....+++.|+|.|-.+..++.
T Consensus 157 ~~l~~~e~~~il~~~~~~~~~~~-~~~al~~ia~~~~G~pR~~~~ll~ 203 (305)
T TIGR00635 157 EFYTVEELAEIVSRSAGLLNVEI-EPEAALEIARRSRGTPRIANRLLR 203 (305)
T ss_pred CCCCHHHHHHHHHHHHHHhCCCc-CHHHHHHHHHHhCCCcchHHHHHH
Confidence 99999999999998875431111 134557899999999966554444
No 62
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.07 E-value=3e-05 Score=67.15 Aligned_cols=84 Identities=18% Similarity=0.231 Sum_probs=47.5
Q ss_pred hccCCCCcEEeccCCCCCcccCCCCC-CCCCCCEEeccCCCCCcccCcCcCCCCCCCEEeccCcccccCCccccCCcCCc
Q 047161 492 IELLTGLVFLNLNDCKILVRLPSTIN-GWKSLRTVNLSRCSKLENMPESLGQMESLEELDVSGTVIRQPVPSIFFPSRIL 570 (720)
Q Consensus 492 i~~l~~L~~L~Ls~n~~~~~lp~~i~-~l~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~L~~n~l~~~~~~~~~~~~~L 570 (720)
+....+|...+|++|. ...+|+.+. +.+.+.+|++++| .+..+|..+..|+.|+.|+++.|.+...|.-++.+ .+|
T Consensus 49 l~~~~el~~i~ls~N~-fk~fp~kft~kf~t~t~lNl~~n-eisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L-~~l 125 (177)
T KOG4579|consen 49 LSKGYELTKISLSDNG-FKKFPKKFTIKFPTATTLNLANN-EISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPL-IKL 125 (177)
T ss_pred HhCCceEEEEecccch-hhhCCHHHhhccchhhhhhcchh-hhhhchHHHhhhHHhhhcccccCccccchHHHHHH-HhH
Confidence 4445556666666665 455555543 3345666666665 34556666666666666666666666655544442 455
Q ss_pred eEEEeecC
Q 047161 571 KVYLFVDT 578 (720)
Q Consensus 571 ~~L~l~~~ 578 (720)
..|+..+|
T Consensus 126 ~~Lds~~n 133 (177)
T KOG4579|consen 126 DMLDSPEN 133 (177)
T ss_pred HHhcCCCC
Confidence 44444333
No 63
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.06 E-value=3.2e-05 Score=67.01 Aligned_cols=96 Identities=18% Similarity=0.318 Sum_probs=79.1
Q ss_pred CCCCCCceeeecCCCCCCCCCCCCcccCccchhhhHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCC
Q 047161 453 FTGAPNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSK 532 (720)
Q Consensus 453 ~~~l~~L~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~ 532 (720)
+++...|...+|++|. ++.+|..+ ...++.++.|+|++|. +..+|..+..++.|+.|+++.|.
T Consensus 49 l~~~~el~~i~ls~N~-------fk~fp~kf--------t~kf~t~t~lNl~~ne-isdvPeE~Aam~aLr~lNl~~N~- 111 (177)
T KOG4579|consen 49 LSKGYELTKISLSDNG-------FKKFPKKF--------TIKFPTATTLNLANNE-ISDVPEELAAMPALRSLNLRFNP- 111 (177)
T ss_pred HhCCceEEEEecccch-------hhhCCHHH--------hhccchhhhhhcchhh-hhhchHHHhhhHHhhhcccccCc-
Confidence 4556678889999988 67888764 4456689999999998 78899999999999999999986
Q ss_pred CcccCcCcCCCCCCCEEeccCcccccCCccccC
Q 047161 533 LENMPESLGQMESLEELDVSGTVIRQPVPSIFF 565 (720)
Q Consensus 533 l~~lp~~~~~L~~L~~L~L~~n~l~~~~~~~~~ 565 (720)
+...|..+..|.+|-.|+..+|.+..++-..+.
T Consensus 112 l~~~p~vi~~L~~l~~Lds~~na~~eid~dl~~ 144 (177)
T KOG4579|consen 112 LNAEPRVIAPLIKLDMLDSPENARAEIDVDLFY 144 (177)
T ss_pred cccchHHHHHHHhHHHhcCCCCccccCcHHHhc
Confidence 556788888899999999999998888766444
No 64
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.02 E-value=0.00024 Score=69.66 Aligned_cols=184 Identities=21% Similarity=0.168 Sum_probs=100.1
Q ss_pred CCCCceeeecCCCCCCCCCCCCcccCccchhhhHHHHhccCCCCcEEeccCCCCC---cccCCCCCCCCCCCEEeccCCC
Q 047161 455 GAPNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKIL---VRLPSTINGWKSLRTVNLSRCS 531 (720)
Q Consensus 455 ~l~~L~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~---~~lp~~i~~l~~L~~L~L~~~~ 531 (720)
.++.++.|||.+|. +..-. .+-..+.++++|++|+|+.|.+. +.+| -.+.+|++|-|.|..
T Consensus 69 ~~~~v~elDL~~N~-------iSdWs------eI~~ile~lP~l~~LNls~N~L~s~I~~lp---~p~~nl~~lVLNgT~ 132 (418)
T KOG2982|consen 69 SVTDVKELDLTGNL-------ISDWS------EIGAILEQLPALTTLNLSCNSLSSDIKSLP---LPLKNLRVLVLNGTG 132 (418)
T ss_pred Hhhhhhhhhcccch-------hccHH------HHHHHHhcCccceEeeccCCcCCCccccCc---ccccceEEEEEcCCC
Confidence 46678888998876 22211 12222778999999999988743 2333 245789999888754
Q ss_pred CC-cccCcCcCCCCCCCEEeccCcccccCCcc---ccCCcCCceEEEeecCCCCCC-----CCCcccccccccccccCCC
Q 047161 532 KL-ENMPESLGQMESLEELDVSGTVIRQPVPS---IFFPSRILKVYLFVDTRDHRT-----SSSSWHLWFPFSLMQKGSS 602 (720)
Q Consensus 532 ~l-~~lp~~~~~L~~L~~L~L~~n~l~~~~~~---~~~~~~~L~~L~l~~~~~~~~-----~~~~~~~l~~l~~l~l~~~ 602 (720)
.. ......+..+|.+++|.++.|.+...... +-.-.+.+++|+...|..... ....|.+ ...+....+
T Consensus 133 L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpn---v~sv~v~e~ 209 (418)
T KOG2982|consen 133 LSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPN---VNSVFVCEG 209 (418)
T ss_pred CChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhccc---chheeeecC
Confidence 32 12234466788888888888854432111 111113455555543322110 0011111 111111111
Q ss_pred Cccccc-CCCCCCCCCCCcccccEEECCCCCCcccc--ccccCCCCCceeeccccccccccCC
Q 047161 603 DSMALM-LPSLSGLCSLTELNLKKLNLRRNNFVSLR--GTINHLPKFKHLKLDDCKRLRSLSE 662 (720)
Q Consensus 603 ~~~~~~-~~~l~~l~~L~~L~L~~L~Ls~n~l~~lp--~~i~~l~~L~~L~L~~c~~L~~lp~ 662 (720)
.+.+.. ......++.+ ..|+|+.|++.++. ..+..+++|..|.++++|-+..+..
T Consensus 210 PlK~~s~ek~se~~p~~-----~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~ 267 (418)
T KOG2982|consen 210 PLKTESSEKGSEPFPSL-----SCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRG 267 (418)
T ss_pred cccchhhcccCCCCCcc-----hhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccC
Confidence 111111 1113334443 35677888877654 4567899999999999997766654
No 65
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=97.00 E-value=0.0081 Score=63.17 Aligned_cols=172 Identities=16% Similarity=0.089 Sum_probs=97.8
Q ss_pred CCCCccccchhHHHHHHhhhc---cCCCeEEEEEecCCCccccchhcHHHHHHHHHHhhhhccccee-ccchhhHHHHHH
Q 047161 126 ILDDLVEMNSRLKKLRLLLDA---ESRDVRMIGICGMGGVELSEKDGLIALQKQLLSKTLMEIDIEI-RNDFDGIKMIKR 201 (720)
Q Consensus 126 ~~~~~vG~~~~~~~i~~~L~~---~~~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~~~~~~-~~~~~~~~~l~~ 201 (720)
..+++||++..++.+..++.. .......+-|+|+.|+ +...+.+.+.+.+ +..-... .........+..
T Consensus 23 ~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~------GKT~la~~ia~~l-~~~~~~~~~~~~~~~~~l~~ 95 (328)
T PRK00080 23 SLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGL------GKTTLANIIANEM-GVNIRITSGPALEKPGDLAA 95 (328)
T ss_pred CHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCc------cHHHHHHHHHHHh-CCCeEEEecccccChHHHHH
Confidence 346799999999999877753 2334567789999999 4444444444442 2110000 000111122222
Q ss_pred HHh--cCCeEEEEecCCcHH--HHHHHhccCCC-------------------CCCCCeEEEEcCChhhhhhc--cccceE
Q 047161 202 ELR--RRNVLVVIDDAVHIR--QLNRLAGKHSW-------------------FGSGSRIIIPTRDEHLLRTL--RVDGVY 256 (720)
Q Consensus 202 ~l~--~kr~LlVLDdv~~~~--~~~~l~~~~~~-------------------~~~gsrIivTTR~~~v~~~~--~~~~~~ 256 (720)
.+. ++.-+|++||+.... ..+.+...+.. -.+.+-|..|||...+.... .....+
T Consensus 96 ~l~~l~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li~at~~~~~l~~~L~sRf~~~~ 175 (328)
T PRK00080 96 ILTNLEEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLIGATTRAGLLTSPLRDRFGIVQ 175 (328)
T ss_pred HHHhcccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceeecCCCceEEeecCCcccCCHHHHHhcCeee
Confidence 222 345688899987532 22222211110 01234566777755543332 123468
Q ss_pred ecCCCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHhCCCchHHHHhh
Q 047161 257 KVEKLDDDEALELFNKRAFDGQPSKDYVELIKRIVKYADGLPFALETLG 305 (720)
Q Consensus 257 ~l~~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~i~~~c~glPLai~~~g 305 (720)
++++++.++..+++.+.+-..... --.+....|++.|+|.|-.+..+.
T Consensus 176 ~l~~~~~~e~~~il~~~~~~~~~~-~~~~~~~~ia~~~~G~pR~a~~~l 223 (328)
T PRK00080 176 RLEFYTVEELEKIVKRSARILGVE-IDEEGALEIARRSRGTPRIANRLL 223 (328)
T ss_pred ecCCCCHHHHHHHHHHHHHHcCCC-cCHHHHHHHHHHcCCCchHHHHHH
Confidence 999999999999999887544111 112457889999999996544443
No 66
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=96.95 E-value=0.034 Score=59.57 Aligned_cols=175 Identities=15% Similarity=0.130 Sum_probs=98.4
Q ss_pred CCCCCccccchhHHHHHHhhhc--cCCCeEEEEEecCCCccccc-----------------------------hhcHHHH
Q 047161 125 GILDDLVEMNSRLKKLRLLLDA--ESRDVRMIGICGMGGVELSE-----------------------------KDGLIAL 173 (720)
Q Consensus 125 ~~~~~~vG~~~~~~~i~~~L~~--~~~~~~vi~I~G~gGi~vs~-----------------------------~~~~~~~ 173 (720)
..++.++||++++++|...+.. .......+-|+|++|++.+. ..+...+
T Consensus 12 ~~p~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~ 91 (365)
T TIGR02928 12 YVPDRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQV 91 (365)
T ss_pred CCCCCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHH
Confidence 4456899999999999998853 12334567899999992211 0122345
Q ss_pred HHHHHHhhhh--cccc-eeccchhhHHHHHHHHh--cCCeEEEEecCCcHH-----HHHHHhccCCC-CCCCC--eEEEE
Q 047161 174 QKQLLSKTLM--EIDI-EIRNDFDGIKMIKRELR--RRNVLVVIDDAVHIR-----QLNRLAGKHSW-FGSGS--RIIIP 240 (720)
Q Consensus 174 ~~~il~~~~~--~~~~-~~~~~~~~~~~l~~~l~--~kr~LlVLDdv~~~~-----~~~~l~~~~~~-~~~gs--rIivT 240 (720)
..+++.++.. .... ...+..+....+.+.+. +++++||||+++... .+..+.....+ ..+++ .+|.+
T Consensus 92 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i 171 (365)
T TIGR02928 92 LVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGI 171 (365)
T ss_pred HHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEE
Confidence 5555555421 1100 00122233445555553 567899999998761 13333322111 11222 35555
Q ss_pred cCChhhhhhc------cc-cceEecCCCCHHHHHHHHHHHhc---CC-CCCchHHHHHHHHHHHhCCCch
Q 047161 241 TRDEHLLRTL------RV-DGVYKVEKLDDDEALELFNKRAF---DG-QPSKDYVELIKRIVKYADGLPF 299 (720)
Q Consensus 241 TR~~~v~~~~------~~-~~~~~l~~L~~~~s~~Lf~~~af---~~-~~~~~~~~~~~~i~~~c~glPL 299 (720)
|........+ .. ...+.+++.+.+|-.+++..++- .. ...++..+...+++..+.|.|-
T Consensus 172 ~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R 241 (365)
T TIGR02928 172 SNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDAR 241 (365)
T ss_pred ECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHH
Confidence 5544332211 11 24678999999999999988763 22 2333444555667777778873
No 67
>PRK13342 recombination factor protein RarA; Reviewed
Probab=96.90 E-value=0.015 Score=63.26 Aligned_cols=165 Identities=16% Similarity=0.197 Sum_probs=93.2
Q ss_pred CCccccchhHHH---HHHhhhccCCCeEEEEEecCCCccccchhcHHHHHHHHHHhhhhcccceeccch-------hhHH
Q 047161 128 DDLVEMNSRLKK---LRLLLDAESRDVRMIGICGMGGVELSEKDGLIALQKQLLSKTLMEIDIEIRNDF-------DGIK 197 (720)
Q Consensus 128 ~~~vG~~~~~~~---i~~~L~~~~~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~~~~~~~~~~-------~~~~ 197 (720)
+++||.+..+.. +..++. ......+-++|.+|++ ...+.+.+... ............ ...+
T Consensus 12 ~d~vGq~~~v~~~~~L~~~i~--~~~~~~ilL~GppGtG------KTtLA~~ia~~-~~~~~~~l~a~~~~~~~ir~ii~ 82 (413)
T PRK13342 12 DEVVGQEHLLGPGKPLRRMIE--AGRLSSMILWGPPGTG------KTTLARIIAGA-TDAPFEALSAVTSGVKDLREVIE 82 (413)
T ss_pred HHhcCcHHHhCcchHHHHHHH--cCCCceEEEECCCCCC------HHHHHHHHHHH-hCCCEEEEecccccHHHHHHHHH
Confidence 568888766554 666653 3455677889999994 33444444443 222211111111 1122
Q ss_pred HHHHHH-hcCCeEEEEecCCcH--HHHHHHhccCCCCCCCCeEEE--EcCChh--hhhhc-cccceEecCCCCHHHHHHH
Q 047161 198 MIKREL-RRRNVLVVIDDAVHI--RQLNRLAGKHSWFGSGSRIII--PTRDEH--LLRTL-RVDGVYKVEKLDDDEALEL 269 (720)
Q Consensus 198 ~l~~~l-~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIiv--TTR~~~--v~~~~-~~~~~~~l~~L~~~~s~~L 269 (720)
..+... .+++.+|++|+++.. .+.+.|...+. .|..++| ||.+.. +.... .--..+++++++.++.+++
T Consensus 83 ~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le---~~~iilI~att~n~~~~l~~aL~SR~~~~~~~~ls~e~i~~l 159 (413)
T PRK13342 83 EARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVE---DGTITLIGATTENPSFEVNPALLSRAQVFELKPLSEEDIEQL 159 (413)
T ss_pred HHHHhhhcCCceEEEEechhhhCHHHHHHHHHHhh---cCcEEEEEeCCCChhhhccHHHhccceeeEeCCCCHHHHHHH
Confidence 222111 357889999999864 45666665554 3555554 344432 11111 1125789999999999999
Q ss_pred HHHHhcCC-CCC-chHHHHHHHHHHHhCCCchHHHHh
Q 047161 270 FNKRAFDG-QPS-KDYVELIKRIVKYADGLPFALETL 304 (720)
Q Consensus 270 f~~~af~~-~~~-~~~~~~~~~i~~~c~glPLai~~~ 304 (720)
+.+.+-.. ... .--.+....+++.|+|.+..+..+
T Consensus 160 L~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~ 196 (413)
T PRK13342 160 LKRALEDKERGLVELDDEALDALARLANGDARRALNL 196 (413)
T ss_pred HHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHH
Confidence 98854321 111 112455677889999988765443
No 68
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.86 E-value=0.00027 Score=80.71 Aligned_cols=107 Identities=16% Similarity=0.272 Sum_probs=63.2
Q ss_pred CCceeeecCCCCCCCCCCCCcccCccchhhhHHHHhccCCCCcEEeccCCCCC-cccCCCCCCCCCCCEEeccCCCCCcc
Q 047161 457 PNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKIL-VRLPSTINGWKSLRTVNLSRCSKLEN 535 (720)
Q Consensus 457 ~~L~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~-~~lp~~i~~l~~L~~L~L~~~~~l~~ 535 (720)
.+|++|+++|...+ ... .....-..||+|+.|.+++-.+. ..+-.-..++++|..||+|++. ++.
T Consensus 122 ~nL~~LdI~G~~~~---------s~~----W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~Tn-I~n 187 (699)
T KOG3665|consen 122 QNLQHLDISGSELF---------SNG----WPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTN-ISN 187 (699)
T ss_pred HhhhhcCccccchh---------hcc----HHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCC-ccC
Confidence 57888888885422 111 11111234788888888774422 1122223467888888888864 444
Q ss_pred cCcCcCCCCCCCEEeccCccccc--CCccccCCcCCceEEEeecCC
Q 047161 536 MPESLGQMESLEELDVSGTVIRQ--PVPSIFFPSRILKVYLFVDTR 579 (720)
Q Consensus 536 lp~~~~~L~~L~~L~L~~n~l~~--~~~~~~~~~~~L~~L~l~~~~ 579 (720)
+ .++++|++|+.|.+.+=.+.. ....++.+ ++|+.|+++...
T Consensus 188 l-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L-~~L~vLDIS~~~ 231 (699)
T KOG3665|consen 188 L-SGISRLKNLQVLSMRNLEFESYQDLIDLFNL-KKLRVLDISRDK 231 (699)
T ss_pred c-HHHhccccHHHHhccCCCCCchhhHHHHhcc-cCCCeeeccccc
Confidence 4 567788888888777655543 22234454 888888886543
No 69
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=96.56 E-value=3.7e-05 Score=75.18 Aligned_cols=178 Identities=14% Similarity=0.129 Sum_probs=102.9
Q ss_pred CCCCEEeccCCCCCc-ccCcCcCCCCCCCEEeccCcccccCCccccCCcCCceEEEeecCCCCCCCCC----cccccccc
Q 047161 520 KSLRTVNLSRCSKLE-NMPESLGQMESLEELDVSGTVIRQPVPSIFFPSRILKVYLFVDTRDHRTSSS----SWHLWFPF 594 (720)
Q Consensus 520 ~~L~~L~L~~~~~l~-~lp~~~~~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~----~~~~l~~l 594 (720)
+.|++|||+.-.+.. .+-..+..+..|+.|.|.++.+...+......-.+|+.|+++.+. ++... .+..+..|
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~s--G~t~n~~~ll~~scs~L 262 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCS--GFTENALQLLLSSCSRL 262 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeecccccc--ccchhHHHHHHHhhhhH
Confidence 358999998754332 222345678889999999988876544333333889999986553 22222 23344445
Q ss_pred cccccCCCCcccccCCC-CCCCCCCCcccccEEECCCCC--Cc--cccccccCCCCCceeeccccccccc-----cCCcc
Q 047161 595 SLMQKGSSDSMALMLPS-LSGLCSLTELNLKKLNLRRNN--FV--SLRGTINHLPKFKHLKLDDCKRLRS-----LSELP 664 (720)
Q Consensus 595 ~~l~l~~~~~~~~~~~~-l~~l~~L~~L~L~~L~Ls~n~--l~--~lp~~i~~l~~L~~L~L~~c~~L~~-----lp~lp 664 (720)
..++++-+......... ..... =+|..|+|+|+. +. .+..-...+++|..|+|++|..++. +-.+
T Consensus 263 ~~LNlsWc~l~~~~Vtv~V~his----e~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf- 337 (419)
T KOG2120|consen 263 DELNLSWCFLFTEKVTVAVAHIS----ETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKF- 337 (419)
T ss_pred hhcCchHhhccchhhhHHHhhhc----hhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhc-
Confidence 55554433322221111 00000 033677788762 21 2333346789999999999986654 1123
Q ss_pred cccceEeeecCcccccc-hhhccCchhHhhhhhhcccchhH
Q 047161 665 SDIKKVRVHGCTSLATI-SDALRSCNSATSRIFCINCPKLI 704 (720)
Q Consensus 665 ~~L~~L~l~~c~~L~~l-p~~~~~~~~L~~l~~~~nc~~l~ 704 (720)
+.|++|.++.|-.+--- --.+...|+|..|+...-||.-.
T Consensus 338 ~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~vsdt~ 378 (419)
T KOG2120|consen 338 NYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCVSDTT 378 (419)
T ss_pred chheeeehhhhcCCChHHeeeeccCcceEEEEeccccCchH
Confidence 45999999999754211 12566778888866655555543
No 70
>PRK04841 transcriptional regulator MalT; Provisional
Probab=96.51 E-value=0.03 Score=67.97 Aligned_cols=176 Identities=16% Similarity=0.142 Sum_probs=99.6
Q ss_pred CCCCccccchhHHHHHHhhhccCCCeEEEEEecCCCcccc--------------------chhcHHHHHHHHHHhhhhcc
Q 047161 126 ILDDLVEMNSRLKKLRLLLDAESRDVRMIGICGMGGVELS--------------------EKDGLIALQKQLLSKTLMEI 185 (720)
Q Consensus 126 ~~~~~vG~~~~~~~i~~~L~~~~~~~~vi~I~G~gGi~vs--------------------~~~~~~~~~~~il~~~~~~~ 185 (720)
....+|-|..-.+.+. +....+++.|+|++|.++| ...+...+...++..+-...
T Consensus 12 ~~~~~~~R~rl~~~l~-----~~~~~~~~~v~apaG~GKTtl~~~~~~~~~~~~w~~l~~~d~~~~~f~~~l~~~l~~~~ 86 (903)
T PRK04841 12 RLHNTVVRERLLAKLS-----GANNYRLVLVTSPAGYGKTTLISQWAAGKNNLGWYSLDESDNQPERFASYLIAALQQAT 86 (903)
T ss_pred CccccCcchHHHHHHh-----cccCCCeEEEECCCCCCHHHHHHHHHHhCCCeEEEecCcccCCHHHHHHHHHHHHHHhc
Confidence 3456776764444442 2346789999999999211 12233444455555531111
Q ss_pred cce---e---------ccchhhHHHHHHHHh--cCCeEEEEecCCcHH---HHHHHhccCCCCCCCCeEEEEcCChhhh-
Q 047161 186 DIE---I---------RNDFDGIKMIKRELR--RRNVLVVIDDAVHIR---QLNRLAGKHSWFGSGSRIIIPTRDEHLL- 247 (720)
Q Consensus 186 ~~~---~---------~~~~~~~~~l~~~l~--~kr~LlVLDdv~~~~---~~~~l~~~~~~~~~gsrIivTTR~~~v~- 247 (720)
... . .+.......+-..+. +.+++|||||+...+ ..+.+...+....++-++|||||..--.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~~~~ 166 (903)
T PRK04841 87 NGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLPPLG 166 (903)
T ss_pred CcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCCCCc
Confidence 000 0 111112222333332 678999999997542 1223333333334667888999984211
Q ss_pred -hhcc-ccceEecC----CCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHhCCCchHHHHhhhhccC
Q 047161 248 -RTLR-VDGVYKVE----KLDDDEALELFNKRAFDGQPSKDYVELIKRIVKYADGLPFALETLGSVLFG 310 (720)
Q Consensus 248 -~~~~-~~~~~~l~----~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~i~~~c~glPLai~~~g~~l~~ 310 (720)
.... .....++. +++.+|+.++|.......- -.+...++.+.|+|.|+++..++..+.+
T Consensus 167 ~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~~----~~~~~~~l~~~t~Gwp~~l~l~~~~~~~ 231 (903)
T PRK04841 167 IANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSPI----EAAESSRLCDDVEGWATALQLIALSARQ 231 (903)
T ss_pred hHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCCC----CHHHHHHHHHHhCChHHHHHHHHHHHhh
Confidence 1111 12244555 8999999999976543221 1234578999999999999988876653
No 71
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=96.49 E-value=0.05 Score=62.27 Aligned_cols=183 Identities=13% Similarity=0.135 Sum_probs=95.4
Q ss_pred CCCCCccccchhHHHHHHhhhc---cCCCeEEEEEecCCCccccc------------------------------hhcHH
Q 047161 125 GILDDLVEMNSRLKKLRLLLDA---ESRDVRMIGICGMGGVELSE------------------------------KDGLI 171 (720)
Q Consensus 125 ~~~~~~vG~~~~~~~i~~~L~~---~~~~~~vi~I~G~gGi~vs~------------------------------~~~~~ 171 (720)
..++.++|||+++++|...|.. +...-.++-|+|+.|.+.+. ..+..
T Consensus 752 YVPD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~ 831 (1164)
T PTZ00112 752 VVPKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPN 831 (1164)
T ss_pred cCCCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHH
Confidence 4557899999999999888852 23334677899999981110 01222
Q ss_pred HHHHHHHHhhhhcccceeccchhhHHHHHHHHh---cCCeEEEEecCCcHH--HHHHHhccCCCC-CCCCeEEE--EcCC
Q 047161 172 ALQKQLLSKTLMEIDIEIRNDFDGIKMIKRELR---RRNVLVVIDDAVHIR--QLNRLAGKHSWF-GSGSRIII--PTRD 243 (720)
Q Consensus 172 ~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~l~---~kr~LlVLDdv~~~~--~~~~l~~~~~~~-~~gsrIiv--TTR~ 243 (720)
.+...|..++.+..........+....+.+.+. +...+||||+|+... .=+.|...+.|. ..+++|+| +|.+
T Consensus 832 sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGISNd 911 (1164)
T PTZ00112 832 AAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAISNT 911 (1164)
T ss_pred HHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEecCc
Confidence 344444444322221111122223334444432 223589999998542 112222222221 24667655 3432
Q ss_pred --------hhhhhhccccceEecCCCCHHHHHHHHHHHhcCC---CCCchHHHHHHHHHHHhCCCchHHHHhhhhc
Q 047161 244 --------EHLLRTLRVDGVYKVEKLDDDEALELFNKRAFDG---QPSKDYVELIKRIVKYADGLPFALETLGSVL 308 (720)
Q Consensus 244 --------~~v~~~~~~~~~~~l~~L~~~~s~~Lf~~~af~~---~~~~~~~~~~~~i~~~c~glPLai~~~g~~l 308 (720)
..|...++.. .+..++.+.++-.+++..+|-.. ..+..++-+++.++...|-.-.|+.++-.+.
T Consensus 912 lDLperLdPRLRSRLg~e-eIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAg 986 (1164)
T PTZ00112 912 MDLPERLIPRCRSRLAFG-RLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAF 986 (1164)
T ss_pred hhcchhhhhhhhhccccc-cccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHH
Confidence 2222333322 35568999999999999887532 2233334444444444444556666554443
No 72
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.33 E-value=0.0092 Score=55.72 Aligned_cols=31 Identities=19% Similarity=0.349 Sum_probs=16.0
Q ss_pred cEEECCCCCCccccc----cccCCCCCceeecccc
Q 047161 624 KKLNLRRNNFVSLRG----TINHLPKFKHLKLDDC 654 (720)
Q Consensus 624 ~~L~Ls~n~l~~lp~----~i~~l~~L~~L~L~~c 654 (720)
++|.+-+|..+..+. .+..+|+|+.||...-
T Consensus 116 ~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 116 EYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred ceeeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 344444554443321 2355677777777653
No 73
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=96.31 E-value=0.041 Score=58.76 Aligned_cols=162 Identities=19% Similarity=0.283 Sum_probs=92.3
Q ss_pred CCCCccccchhHHHHHHhhhcc--C---------CCeEEEEEecCCCccccchhcHHHHHHHHHHhhhhcccceecc---
Q 047161 126 ILDDLVEMNSRLKKLRLLLDAE--S---------RDVRMIGICGMGGVELSEKDGLIALQKQLLSKTLMEIDIEIRN--- 191 (720)
Q Consensus 126 ~~~~~vG~~~~~~~i~~~L~~~--~---------~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~~~~~~~~--- 191 (720)
..+++.|+++.++++.+.+... . ...+-|.++|..|. +...+.+.+...+ .........
T Consensus 120 ~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGt------GKT~lakaia~~l-~~~~~~v~~~~l 192 (364)
T TIGR01242 120 SYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGT------GKTLLAKAVAHET-NATFIRVVGSEL 192 (364)
T ss_pred CHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCC------CHHHHHHHHHHhC-CCCEEecchHHH
Confidence 3356899999999998776311 1 22345889999999 3334444444331 111111100
Q ss_pred ----chhhHHHHHHHH----hcCCeEEEEecCCcH-------------H---HHHHHhccCCCC--CCCCeEEEEcCChh
Q 047161 192 ----DFDGIKMIKREL----RRRNVLVVIDDAVHI-------------R---QLNRLAGKHSWF--GSGSRIIIPTRDEH 245 (720)
Q Consensus 192 ----~~~~~~~l~~~l----~~kr~LlVLDdv~~~-------------~---~~~~l~~~~~~~--~~gsrIivTTR~~~ 245 (720)
..+....++..+ .....+|++||++.. + .+..+...+... ..+.+||.||....
T Consensus 193 ~~~~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~ 272 (364)
T TIGR01242 193 VRKYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPD 272 (364)
T ss_pred HHHhhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCChh
Confidence 011112233322 235679999998753 1 133333333322 24667888887543
Q ss_pred -----hhhhccccceEecCCCCHHHHHHHHHHHhcCCCCC--chHHHHHHHHHHHhCCCc
Q 047161 246 -----LLRTLRVDGVYKVEKLDDDEALELFNKRAFDGQPS--KDYVELIKRIVKYADGLP 298 (720)
Q Consensus 246 -----v~~~~~~~~~~~l~~L~~~~s~~Lf~~~af~~~~~--~~~~~~~~~i~~~c~glP 298 (720)
+.+....+..+++...+.++..++|..++.+.... .++ ..+++.+.|..
T Consensus 273 ~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~~----~~la~~t~g~s 328 (364)
T TIGR01242 273 ILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVDL----EAIAKMTEGAS 328 (364)
T ss_pred hCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCCH----HHHHHHcCCCC
Confidence 33223456789999999999999999988665222 233 45566676654
No 74
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.25 E-value=0.0025 Score=61.92 Aligned_cols=87 Identities=22% Similarity=0.198 Sum_probs=51.7
Q ss_pred ccCCCCcEEeccCC--CCCcccCCCCCCCCCCCEEeccCCCCC--cccCcCcCCCCCCCEEeccCcccccCC---ccccC
Q 047161 493 ELLTGLVFLNLNDC--KILVRLPSTINGWKSLRTVNLSRCSKL--ENMPESLGQMESLEELDVSGTVIRQPV---PSIFF 565 (720)
Q Consensus 493 ~~l~~L~~L~Ls~n--~~~~~lp~~i~~l~~L~~L~L~~~~~l--~~lp~~~~~L~~L~~L~L~~n~l~~~~---~~~~~ 565 (720)
-.|++|++|.++.| ...+.++....++++|++|++++|.+. .+++ .+..+.+|..|++.+|..+..- ..++.
T Consensus 62 P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~-pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ 140 (260)
T KOG2739|consen 62 PKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLR-PLKELENLKSLDLFNCSVTNLDDYREKVFL 140 (260)
T ss_pred CCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccc-hhhhhcchhhhhcccCCccccccHHHHHHH
Confidence 33667777777777 444555555556677777777777543 1221 2445666777777777655532 23455
Q ss_pred CcCCceEEEeecCCC
Q 047161 566 PSRILKVYLFVDTRD 580 (720)
Q Consensus 566 ~~~~L~~L~l~~~~~ 580 (720)
++++|+.|+-.+...
T Consensus 141 ll~~L~~LD~~dv~~ 155 (260)
T KOG2739|consen 141 LLPSLKYLDGCDVDG 155 (260)
T ss_pred HhhhhccccccccCC
Confidence 556777666544433
No 75
>PF13173 AAA_14: AAA domain
Probab=96.20 E-value=0.019 Score=51.04 Aligned_cols=109 Identities=20% Similarity=0.142 Sum_probs=70.2
Q ss_pred EEEEEecCCCccccchhcHHHHHHHHHHhhhh-ccc--ceeccchh-------hHHHHHHHHhcCCeEEEEecCCcHHHH
Q 047161 152 RMIGICGMGGVELSEKDGLIALQKQLLSKTLM-EID--IEIRNDFD-------GIKMIKRELRRRNVLVVIDDAVHIRQL 221 (720)
Q Consensus 152 ~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~-~~~--~~~~~~~~-------~~~~l~~~l~~kr~LlVLDdv~~~~~~ 221 (720)
+++.|.|..|+ +...+.++++.+... ... .+..+... ..+.+.+....++.+|++|+|....+|
T Consensus 3 ~~~~l~G~R~v------GKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iDEiq~~~~~ 76 (128)
T PF13173_consen 3 KIIILTGPRGV------GKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPDLLEYFLELIKPGKKYIFIDEIQYLPDW 76 (128)
T ss_pred CeEEEECCCCC------CHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhhhHHHHHHhhccCCcEEEEehhhhhccH
Confidence 57889999998 455566666655330 110 11111111 223344444457888999999998888
Q ss_pred HHHhccCCCCCCCCeEEEEcCChhhhhhc------cccceEecCCCCHHHH
Q 047161 222 NRLAGKHSWFGSGSRIIIPTRDEHLLRTL------RVDGVYKVEKLDDDEA 266 (720)
Q Consensus 222 ~~l~~~~~~~~~gsrIivTTR~~~v~~~~------~~~~~~~l~~L~~~~s 266 (720)
......+-..++..+||+|+.+......- |-...++|.+|+..|-
T Consensus 77 ~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 77 EDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred HHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 87777666556678999999988776431 2234789999988763
No 76
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=95.96 E-value=0.0056 Score=70.10 Aligned_cols=84 Identities=18% Similarity=0.152 Sum_probs=45.4
Q ss_pred hccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCCCcccC--cCcCCCCCCCEEeccCcccccCCc------cc
Q 047161 492 IELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMP--ESLGQMESLEELDVSGTVIRQPVP------SI 563 (720)
Q Consensus 492 i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp--~~~~~L~~L~~L~L~~n~l~~~~~------~~ 563 (720)
..++++|..||+|++. +..+ ..+++|++|++|.+.+=.+ ...+ ..+.+|++|+.||+|.......+- .-
T Consensus 169 c~sFpNL~sLDIS~Tn-I~nl-~GIS~LknLq~L~mrnLe~-e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec 245 (699)
T KOG3665|consen 169 CASFPNLRSLDISGTN-ISNL-SGISRLKNLQVLSMRNLEF-ESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLEC 245 (699)
T ss_pred hhccCccceeecCCCC-ccCc-HHHhccccHHHHhccCCCC-CchhhHHHHhcccCCCeeeccccccccchHHHHHHHHh
Confidence 5566777777777766 3444 5566777777776654221 1111 134567777777777654433321 01
Q ss_pred cCCcCCceEEEeecC
Q 047161 564 FFPSRILKVYLFVDT 578 (720)
Q Consensus 564 ~~~~~~L~~L~l~~~ 578 (720)
...+++|+.|+.+++
T Consensus 246 ~~~LpeLrfLDcSgT 260 (699)
T KOG3665|consen 246 GMVLPELRFLDCSGT 260 (699)
T ss_pred cccCccccEEecCCc
Confidence 112366666666544
No 77
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.91 E-value=0.015 Score=54.40 Aligned_cols=83 Identities=22% Similarity=0.221 Sum_probs=44.0
Q ss_pred hccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCCCcccC--cCcCCCCCCCEEeccCcccccCCc---cccCC
Q 047161 492 IELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMP--ESLGQMESLEELDVSGTVIRQPVP---SIFFP 566 (720)
Q Consensus 492 i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp--~~~~~L~~L~~L~L~~n~l~~~~~---~~~~~ 566 (720)
+..++.|.+|.+.+|.+...-|.--.-+++|++|.|.+|++. ++- +.+..++.|++|.+-+|.+....- -....
T Consensus 60 lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~-~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~k 138 (233)
T KOG1644|consen 60 LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQ-ELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYK 138 (233)
T ss_pred CCCccccceEEecCCcceeeccchhhhccccceEEecCcchh-hhhhcchhccCCccceeeecCCchhcccCceeEEEEe
Confidence 455666666666666643333322233456677777666432 221 124456667777776666554332 12233
Q ss_pred cCCceEEEe
Q 047161 567 SRILKVYLF 575 (720)
Q Consensus 567 ~~~L~~L~l 575 (720)
+++|++|++
T Consensus 139 lp~l~~LDF 147 (233)
T KOG1644|consen 139 LPSLRTLDF 147 (233)
T ss_pred cCcceEeeh
Confidence 466666666
No 78
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=95.79 E-value=0.51 Score=49.24 Aligned_cols=165 Identities=17% Similarity=0.244 Sum_probs=94.8
Q ss_pred CCccccchhHHHHHHhhhccCCCeEEEEEecCCCccccchhcHHHHHHHHHHhhhhc----cccee------ccchhhHH
Q 047161 128 DDLVEMNSRLKKLRLLLDAESRDVRMIGICGMGGVELSEKDGLIALQKQLLSKTLME----IDIEI------RNDFDGIK 197 (720)
Q Consensus 128 ~~~vG~~~~~~~i~~~L~~~~~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~----~~~~~------~~~~~~~~ 197 (720)
++++|-+..++.+...+..+ .-...+-++|..|+ +...+.+.+...+... ...+. ....-..+
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~-~~~ha~Lf~G~~G~------Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~ 76 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKN-RFSHAHIIVGEDGI------GKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVD 76 (313)
T ss_pred hhccCcHHHHHHHHHHHHcC-CCCceEEeECCCCC------CHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHH
Confidence 46788887788888777432 22335578899998 3333334443332211 10111 00111122
Q ss_pred HHHHHH--------hcCCeEEEEecC--CcHHHHHHHhccCCCCCCCCeEEEEcCChhhh-hhccc-cceEecCCCCHHH
Q 047161 198 MIKREL--------RRRNVLVVIDDA--VHIRQLNRLAGKHSWFGSGSRIIIPTRDEHLL-RTLRV-DGVYKVEKLDDDE 265 (720)
Q Consensus 198 ~l~~~l--------~~kr~LlVLDdv--~~~~~~~~l~~~~~~~~~gsrIivTTR~~~v~-~~~~~-~~~~~l~~L~~~~ 265 (720)
.+++.. .+++=++|+||+ .+...++.|...+....+++.+|++|.+.+.. ..... ...+++.+++.++
T Consensus 77 ~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc~~~~~~~~~~~~ 156 (313)
T PRK05564 77 DIRNIIEEVNKKPYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQIYKLNRLSKEE 156 (313)
T ss_pred HHHHHHHHHhcCcccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhceeeeCCCcCHHH
Confidence 333322 233334555554 45667999998888777899999888765432 22211 2488999999999
Q ss_pred HHHHHHHHhcCCCCCchHHHHHHHHHHHhCCCchHHHHh
Q 047161 266 ALELFNKRAFDGQPSKDYVELIKRIVKYADGLPFALETL 304 (720)
Q Consensus 266 s~~Lf~~~af~~~~~~~~~~~~~~i~~~c~glPLai~~~ 304 (720)
..+...+.. .... .+....++.+++|.|..+...
T Consensus 157 ~~~~l~~~~-~~~~----~~~~~~l~~~~~g~~~~a~~~ 190 (313)
T PRK05564 157 IEKFISYKY-NDIK----EEEKKSAIAFSDGIPGKVEKF 190 (313)
T ss_pred HHHHHHHHh-cCCC----HHHHHHHHHHcCCCHHHHHHH
Confidence 887775542 2111 233567889999988755433
No 79
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=95.75 E-value=0.16 Score=50.12 Aligned_cols=161 Identities=19% Similarity=0.142 Sum_probs=83.4
Q ss_pred chhHHHHHHhhhccCCCeEEEEEecCCCccccchhcHHHHHHHHHHhhhhcc-cceeccchhhHH---HHHHHHhcCCeE
Q 047161 134 NSRLKKLRLLLDAESRDVRMIGICGMGGVELSEKDGLIALQKQLLSKTLMEI-DIEIRNDFDGIK---MIKRELRRRNVL 209 (720)
Q Consensus 134 ~~~~~~i~~~L~~~~~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~~-~~~~~~~~~~~~---~l~~~l~~kr~L 209 (720)
+..++.+..++. ...-..|-|+|..|++ ...+.+.+..+..... ..-..+...... .+...+.+ .-+
T Consensus 23 ~~~~~~l~~~~~--~~~~~~lll~G~~G~G------KT~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~l 93 (226)
T TIGR03420 23 AELLAALRQLAA--GKGDRFLYLWGESGSG------KSHLLQAACAAAEERGKSAIYLPLAELAQADPEVLEGLEQ-ADL 93 (226)
T ss_pred HHHHHHHHHHHh--cCCCCeEEEECCCCCC------HHHHHHHHHHHHHhcCCcEEEEeHHHHHHhHHHHHhhccc-CCE
Confidence 334566666653 2345678899999994 4444444444422111 111111111111 22222333 348
Q ss_pred EEEecCCcHH---HH-HHHhccCCC-CCCCCeEEEEcCCh---------hhhhhccccceEecCCCCHHHHHHHHHHHhc
Q 047161 210 VVIDDAVHIR---QL-NRLAGKHSW-FGSGSRIIIPTRDE---------HLLRTLRVDGVYKVEKLDDDEALELFNKRAF 275 (720)
Q Consensus 210 lVLDdv~~~~---~~-~~l~~~~~~-~~~gsrIivTTR~~---------~v~~~~~~~~~~~l~~L~~~~s~~Lf~~~af 275 (720)
||+||++... .| +.+...+.. ...+.+||+||+.. .+...+.....+++++++.++-..++.+.+-
T Consensus 94 LvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~~~~~i~l~~l~~~e~~~~l~~~~~ 173 (226)
T TIGR03420 94 VCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAWGLVFQLPPLSDEEKIAALQSRAA 173 (226)
T ss_pred EEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHHhcCeeEecCCCCHHHHHHHHHHHHH
Confidence 9999998653 22 333332221 12345889988743 2222333345789999999999998876542
Q ss_pred CCCCCchHHHHHHHHHHHhCCCchHHHHh
Q 047161 276 DGQPSKDYVELIKRIVKYADGLPFALETL 304 (720)
Q Consensus 276 ~~~~~~~~~~~~~~i~~~c~glPLai~~~ 304 (720)
.....- -.+....+++.+.|.|..+..+
T Consensus 174 ~~~~~~-~~~~l~~L~~~~~gn~r~L~~~ 201 (226)
T TIGR03420 174 RRGLQL-PDEVADYLLRHGSRDMGSLMAL 201 (226)
T ss_pred HcCCCC-CHHHHHHHHHhccCCHHHHHHH
Confidence 221110 1233455666677777665543
No 80
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=95.68 E-value=0.0044 Score=60.28 Aligned_cols=186 Identities=20% Similarity=0.168 Sum_probs=87.8
Q ss_pred CCCCceeeecCCCCCCCCCCCCcccCccchhhhHHHHhccCCCCcEEeccCCCCCcc----cC-------CCCCCCCCCC
Q 047161 455 GAPNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILVR----LP-------STINGWKSLR 523 (720)
Q Consensus 455 ~l~~L~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~----lp-------~~i~~l~~L~ 523 (720)
.+..+..++||||.. .+ -....+-..|.+-.+|+..++++-. ++. +| ..+-+|+.|+
T Consensus 28 ~~d~~~evdLSGNti-------gt----EA~e~l~~~ia~~~~L~vvnfsd~f-tgr~kde~~~~L~~Ll~aLlkcp~l~ 95 (388)
T COG5238 28 MMDELVEVDLSGNTI-------GT----EAMEELCNVIANVRNLRVVNFSDAF-TGRDKDELYSNLVMLLKALLKCPRLQ 95 (388)
T ss_pred hhcceeEEeccCCcc-------cH----HHHHHHHHHHhhhcceeEeehhhhh-hcccHHHHHHHHHHHHHHHhcCCcce
Confidence 467888999999861 10 0111222224445555555555422 221 11 1233456666
Q ss_pred EEeccCCCCCcccCcC----cCCCCCCCEEeccCcccccCCcc--------------ccCCcCCceEEEeecCCCCCCCC
Q 047161 524 TVNLSRCSKLENMPES----LGQMESLEELDVSGTVIRQPVPS--------------IFFPSRILKVYLFVDTRDHRTSS 585 (720)
Q Consensus 524 ~L~L~~~~~l~~lp~~----~~~L~~L~~L~L~~n~l~~~~~~--------------~~~~~~~L~~L~l~~~~~~~~~~ 585 (720)
+.+||.|.+....|+. +.+-+.|.+|.+++|.+--.... .... +.|++.....|++...+.
T Consensus 96 ~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~k-p~Le~vicgrNRlengs~ 174 (388)
T COG5238 96 KVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADK-PKLEVVICGRNRLENGSK 174 (388)
T ss_pred eeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccC-CCceEEEeccchhccCcH
Confidence 6666666555555433 33445566666665543211110 0111 445555555555444332
Q ss_pred Cccc----ccccccccccCCCCcccccCCC--CCCCCCCCcccccEEECCCCCCcccc-----ccccCCCCCceeecccc
Q 047161 586 SSWH----LWFPFSLMQKGSSDSMALMLPS--LSGLCSLTELNLKKLNLRRNNFVSLR-----GTINHLPKFKHLKLDDC 654 (720)
Q Consensus 586 ~~~~----~l~~l~~l~l~~~~~~~~~~~~--l~~l~~L~~L~L~~L~Ls~n~l~~lp-----~~i~~l~~L~~L~L~~c 654 (720)
..+. .-..+..+.+..|.+....+.. +-++...+ +|+.|||.+|.|+..- ..+...+.|+.|.+.+|
T Consensus 175 ~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~--~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDC 252 (388)
T COG5238 175 ELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSH--SLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDC 252 (388)
T ss_pred HHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhC--cceeeeccccchhhhhHHHHHHHhcccchhhhccccch
Confidence 2211 1122333333344333221111 11211111 3478888999877332 23456677899999988
Q ss_pred c
Q 047161 655 K 655 (720)
Q Consensus 655 ~ 655 (720)
-
T Consensus 253 l 253 (388)
T COG5238 253 L 253 (388)
T ss_pred h
Confidence 3
No 81
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.62 E-value=0.0034 Score=61.03 Aligned_cols=87 Identities=15% Similarity=0.162 Sum_probs=60.3
Q ss_pred ccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCC--CCCcccCcCcCCCCCCCEEeccCcccccC--CccccCCcC
Q 047161 493 ELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRC--SKLENMPESLGQMESLEELDVSGTVIRQP--VPSIFFPSR 568 (720)
Q Consensus 493 ~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~--~~l~~lp~~~~~L~~L~~L~L~~n~l~~~--~~~~~~~~~ 568 (720)
..+..|++|++.++..+. + ..+-.|++|++|.++.| ...+.++....++++|++|++++|+++-+ ...... +.
T Consensus 40 d~~~~le~ls~~n~gltt-~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~-l~ 116 (260)
T KOG2739|consen 40 DEFVELELLSVINVGLTT-L-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKE-LE 116 (260)
T ss_pred ccccchhhhhhhccceee-c-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhh-hc
Confidence 345667777777766332 2 24557899999999999 66677777777889999999999988741 112222 26
Q ss_pred CceEEEeecCCCCC
Q 047161 569 ILKVYLFVDTRDHR 582 (720)
Q Consensus 569 ~L~~L~l~~~~~~~ 582 (720)
+|..|++.+|.-..
T Consensus 117 nL~~Ldl~n~~~~~ 130 (260)
T KOG2739|consen 117 NLKSLDLFNCSVTN 130 (260)
T ss_pred chhhhhcccCCccc
Confidence 67777776665444
No 82
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.44 E-value=0.0023 Score=62.93 Aligned_cols=61 Identities=18% Similarity=0.298 Sum_probs=44.0
Q ss_pred CCCCCCEEeccCCCCCc--ccCcCcCCCCCCCEEeccCcccccCCccccCCcCCceEEEeecC
Q 047161 518 GWKSLRTVNLSRCSKLE--NMPESLGQMESLEELDVSGTVIRQPVPSIFFPSRILKVYLFVDT 578 (720)
Q Consensus 518 ~l~~L~~L~L~~~~~l~--~lp~~~~~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~ 578 (720)
..+.++.|||.+|.+.. ++-..+.+||.|+.|+|+.|.+...+...-....+|++|.+.+.
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT 131 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGT 131 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCC
Confidence 46788999999986542 33344678999999999999887665554333478888888443
No 83
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=95.40 E-value=0.96 Score=48.02 Aligned_cols=96 Identities=16% Similarity=0.124 Sum_probs=63.6
Q ss_pred cCCeEEEEecCCcH--HHHHHHhccCCCCCCCCeEEEEcCCh-hhhhhccc-cceEecCCCCHHHHHHHHHHHhcCCCCC
Q 047161 205 RRNVLVVIDDAVHI--RQLNRLAGKHSWFGSGSRIIIPTRDE-HLLRTLRV-DGVYKVEKLDDDEALELFNKRAFDGQPS 280 (720)
Q Consensus 205 ~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIivTTR~~-~v~~~~~~-~~~~~l~~L~~~~s~~Lf~~~af~~~~~ 280 (720)
+.+-++|+||++.. .....|...+.....+..+|++|.+. .+...... -..+.+.+++.++..+.+...... . .
T Consensus 140 ~~~kVviIDead~m~~~aanaLLK~LEepp~~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~-~-~ 217 (365)
T PRK07471 140 GGWRVVIVDTADEMNANAANALLKVLEEPPARSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPD-L-P 217 (365)
T ss_pred CCCEEEEEechHhcCHHHHHHHHHHHhcCCCCeEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhccc-C-C
Confidence 56678999999754 44666666665444567777777665 34333222 247899999999999998875321 1 1
Q ss_pred chHHHHHHHHHHHhCCCchHHHHhh
Q 047161 281 KDYVELIKRIVKYADGLPFALETLG 305 (720)
Q Consensus 281 ~~~~~~~~~i~~~c~glPLai~~~g 305 (720)
. .. ...++..++|.|..+..+.
T Consensus 218 ~--~~-~~~l~~~s~Gsp~~Al~ll 239 (365)
T PRK07471 218 D--DP-RAALAALAEGSVGRALRLA 239 (365)
T ss_pred H--HH-HHHHHHHcCCCHHHHHHHh
Confidence 1 11 2578899999998665543
No 84
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.20 E-value=0.085 Score=46.74 Aligned_cols=103 Identities=18% Similarity=0.280 Sum_probs=56.4
Q ss_pred CCCCCCCceeeecCCCCCCCCCCCCcccCccchhhhHHHHhccCCCCcEEeccCCCCCcccC-CCCCCCCCCCEEeccCC
Q 047161 452 DFTGAPNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILVRLP-STINGWKSLRTVNLSRC 530 (720)
Q Consensus 452 ~~~~l~~L~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp-~~i~~l~~L~~L~L~~~ 530 (720)
.|.++++|+.+.+... ++.++... |..+++|+.+.+.++ +..++ ..+.++++|+.+.+..+
T Consensus 7 ~F~~~~~l~~i~~~~~--------~~~I~~~~--------F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~~~ 68 (129)
T PF13306_consen 7 AFYNCSNLESITFPNT--------IKKIGENA--------FSNCTSLKSINFPNN--LTSIGDNAFSNCKSLESITFPNN 68 (129)
T ss_dssp TTTT-TT--EEEETST----------EE-TTT--------TTT-TT-SEEEESST--TSCE-TTTTTT-TT-EEEEETST
T ss_pred HHhCCCCCCEEEECCC--------eeEeChhh--------ccccccccccccccc--ccccceeeeeccccccccccccc
Confidence 3777888888888743 25666554 667778888888764 33333 45667778888888652
Q ss_pred CCCcccC-cCcCCCCCCCEEeccCcccccCCccccCCcCCceEEEee
Q 047161 531 SKLENMP-ESLGQMESLEELDVSGTVIRQPVPSIFFPSRILKVYLFV 576 (720)
Q Consensus 531 ~~l~~lp-~~~~~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~ 576 (720)
...++ ..+..+++|+.+++..+ +..+....+.. ..|+.+.+.
T Consensus 69 --~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~-~~l~~i~~~ 111 (129)
T PF13306_consen 69 --LKSIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSN-CNLKEINIP 111 (129)
T ss_dssp --T-EE-TTTTTT-TTECEEEETTT--BEEHTTTTTT--T--EEE-T
T ss_pred --ccccccccccccccccccccCcc-ccEEchhhhcC-CCceEEEEC
Confidence 33333 45667888888888765 66666666666 377777663
No 85
>PLN03025 replication factor C subunit; Provisional
Probab=95.07 E-value=0.52 Score=49.29 Aligned_cols=163 Identities=17% Similarity=0.257 Sum_probs=91.8
Q ss_pred CCCccccchhHHHHHHhhhccCCCeEEEEEecCCCccccchhcHHHHHHHHHHhhhhcc----cceeccc-hhhHHHHHH
Q 047161 127 LDDLVEMNSRLKKLRLLLDAESRDVRMIGICGMGGVELSEKDGLIALQKQLLSKTLMEI----DIEIRND-FDGIKMIKR 201 (720)
Q Consensus 127 ~~~~vG~~~~~~~i~~~L~~~~~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~~----~~~~~~~-~~~~~~l~~ 201 (720)
.++++|-+..++.+..++.. +...-+-++|..|++. ..+...+.+.+.+.. ..+.... ....+.+++
T Consensus 12 l~~~~g~~~~~~~L~~~~~~--~~~~~lll~Gp~G~GK------Ttla~~la~~l~~~~~~~~~~eln~sd~~~~~~vr~ 83 (319)
T PLN03025 12 LDDIVGNEDAVSRLQVIARD--GNMPNLILSGPPGTGK------TTSILALAHELLGPNYKEAVLELNASDDRGIDVVRN 83 (319)
T ss_pred HHHhcCcHHHHHHHHHHHhc--CCCceEEEECCCCCCH------HHHHHHHHHHHhcccCccceeeecccccccHHHHHH
Confidence 35688988888888777643 3444567999999943 344444444432211 0111111 112233333
Q ss_pred HHh-----------cCCeEEEEecCCcH--HHHHHHhccCCCCCCCCeEEEEcCCh-hhhhhccc-cceEecCCCCHHHH
Q 047161 202 ELR-----------RRNVLVVIDDAVHI--RQLNRLAGKHSWFGSGSRIIIPTRDE-HLLRTLRV-DGVYKVEKLDDDEA 266 (720)
Q Consensus 202 ~l~-----------~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIivTTR~~-~v~~~~~~-~~~~~l~~L~~~~s 266 (720)
.++ ++.-++++|+++.. ...+.+...+......+++|++|... .+...... -..+++++++.++.
T Consensus 84 ~i~~~~~~~~~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~~i~f~~l~~~~l 163 (319)
T PLN03025 84 KIKMFAQKKVTLPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEI 163 (319)
T ss_pred HHHHHHhccccCCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhhcccCCCCCHHHH
Confidence 321 34568999999864 33455555454445677887777543 22221111 13789999999999
Q ss_pred HHHHHHHhcCCCCCchHHHHHHHHHHHhCCCc
Q 047161 267 LELFNKRAFDGQPSKDYVELIKRIVKYADGLP 298 (720)
Q Consensus 267 ~~Lf~~~af~~~~~~~~~~~~~~i~~~c~glP 298 (720)
.+.+.+.+-.....-+ .+....+++.++|-.
T Consensus 164 ~~~L~~i~~~egi~i~-~~~l~~i~~~~~gDl 194 (319)
T PLN03025 164 LGRLMKVVEAEKVPYV-PEGLEAIIFTADGDM 194 (319)
T ss_pred HHHHHHHHHHcCCCCC-HHHHHHHHHHcCCCH
Confidence 8888776643311111 234567778888755
No 86
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=94.90 E-value=0.39 Score=55.57 Aligned_cols=159 Identities=18% Similarity=0.230 Sum_probs=84.3
Q ss_pred CCccccchhHH---HHHHhhhccCCCeEEEEEecCCCccccchhcHHHHHHHHHHhhhhcccceec-------cchhhHH
Q 047161 128 DDLVEMNSRLK---KLRLLLDAESRDVRMIGICGMGGVELSEKDGLIALQKQLLSKTLMEIDIEIR-------NDFDGIK 197 (720)
Q Consensus 128 ~~~vG~~~~~~---~i~~~L~~~~~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~~~~~~~-------~~~~~~~ 197 (720)
+++||.+..+. .+...+. .+.+..+-++|.+|++.+. +.+.+... ......... +..+...
T Consensus 28 dd~vGQe~ii~~~~~L~~~i~--~~~~~slLL~GPpGtGKTT------LA~aIA~~-~~~~f~~lna~~~~i~dir~~i~ 98 (725)
T PRK13341 28 EEFVGQDHILGEGRLLRRAIK--ADRVGSLILYGPPGVGKTT------LARIIANH-TRAHFSSLNAVLAGVKDLRAEVD 98 (725)
T ss_pred HHhcCcHHHhhhhHHHHHHHh--cCCCceEEEECCCCCCHHH------HHHHHHHH-hcCcceeehhhhhhhHHHHHHHH
Confidence 56888877664 3444443 3456667899999994443 33333222 111111111 1111112
Q ss_pred HHHHHH--hcCCeEEEEecCC--cHHHHHHHhccCCCCCCCCeEEE--EcCChh--hhhhcc-ccceEecCCCCHHHHHH
Q 047161 198 MIKREL--RRRNVLVVIDDAV--HIRQLNRLAGKHSWFGSGSRIII--PTRDEH--LLRTLR-VDGVYKVEKLDDDEALE 268 (720)
Q Consensus 198 ~l~~~l--~~kr~LlVLDdv~--~~~~~~~l~~~~~~~~~gsrIiv--TTR~~~--v~~~~~-~~~~~~l~~L~~~~s~~ 268 (720)
...+.+ .+++.++|||||+ +..+++.|..... .|+.++| ||.+.. +..... -...+.+++|+.++...
T Consensus 99 ~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE---~g~IiLI~aTTenp~~~l~~aL~SR~~v~~l~pLs~edi~~ 175 (725)
T PRK13341 99 RAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVE---NGTITLIGATTENPYFEVNKALVSRSRLFRLKSLSDEDLHQ 175 (725)
T ss_pred HHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhc---CceEEEEEecCCChHhhhhhHhhccccceecCCCCHHHHHH
Confidence 222222 2467799999997 4556777765443 4665555 344431 211111 12478999999999999
Q ss_pred HHHHHhcC------CCCCchHHHHHHHHHHHhCCCc
Q 047161 269 LFNKRAFD------GQPSKDYVELIKRIVKYADGLP 298 (720)
Q Consensus 269 Lf~~~af~------~~~~~~~~~~~~~i~~~c~glP 298 (720)
++.+.+-. .....--.+....+++.+.|.-
T Consensus 176 IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~ 211 (725)
T PRK13341 176 LLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDA 211 (725)
T ss_pred HHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCH
Confidence 98875531 1101111334456677777743
No 87
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=94.83 E-value=1.4 Score=46.94 Aligned_cols=171 Identities=13% Similarity=0.156 Sum_probs=97.1
Q ss_pred CCCCccccchhHHHHHHhhhccCCCeEEEEEecCCCccccchhcHHHHHHHHHHhhhhcc--------------------
Q 047161 126 ILDDLVEMNSRLKKLRLLLDAESRDVRMIGICGMGGVELSEKDGLIALQKQLLSKTLMEI-------------------- 185 (720)
Q Consensus 126 ~~~~~vG~~~~~~~i~~~L~~~~~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~~-------------------- 185 (720)
..+++||.+..++.+.+.+..+. -...+-++|..|++. ..+.+.+...+....
T Consensus 12 ~~~~iig~~~~~~~l~~~~~~~~-~~~~~Ll~G~~G~GK------t~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~ 84 (355)
T TIGR02397 12 TFEDVIGQEHIVQTLKNAIKNGR-IAHAYLFSGPRGTGK------TSIARIFAKALNCQNGPDGEPCNECESCKEINSGS 84 (355)
T ss_pred cHhhccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCH------HHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCC
Confidence 34678999999999988885321 234567899999833 333333333322110
Q ss_pred ccee---ccc-hhh---HHHHHHHH-----hcCCeEEEEecCCcH--HHHHHHhccCCCCCCCCeEEEEcCChh-hhhhc
Q 047161 186 DIEI---RND-FDG---IKMIKREL-----RRRNVLVVIDDAVHI--RQLNRLAGKHSWFGSGSRIIIPTRDEH-LLRTL 250 (720)
Q Consensus 186 ~~~~---~~~-~~~---~~~l~~~l-----~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIivTTR~~~-v~~~~ 250 (720)
..+. ... ... ...+.+.+ .+++-++|+|+++.. ...+.+...+........+|++|.+.+ +....
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lIl~~~~~~~l~~~l 164 (355)
T TIGR02397 85 SLDVIEIDAASNNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILATTEPHKIPATI 164 (355)
T ss_pred CCCEEEeeccccCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcCHHHHHHHHHHHhCCccceeEEEEeCCHHHHHHHH
Confidence 0010 000 011 12232322 245558889998654 456677766655556677777765443 33322
Q ss_pred c-ccceEecCCCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHhCCCchHHHHh
Q 047161 251 R-VDGVYKVEKLDDDEALELFNKRAFDGQPSKDYVELIKRIVKYADGLPFALETL 304 (720)
Q Consensus 251 ~-~~~~~~l~~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~i~~~c~glPLai~~~ 304 (720)
. -...++.++++.++..+.+...+-.....-+ .+....+++.++|.|..+...
T Consensus 165 ~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~i~-~~a~~~l~~~~~g~~~~a~~~ 218 (355)
T TIGR02397 165 LSRCQRFDFKRIPLEDIVERLKKILDKEGIKIE-DEALELIARAADGSLRDALSL 218 (355)
T ss_pred HhheeEEEcCCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHcCCChHHHHHH
Confidence 1 1247888999999988888776533211111 245667788899988655443
No 88
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=94.82 E-value=1.4 Score=50.37 Aligned_cols=164 Identities=13% Similarity=0.124 Sum_probs=93.7
Q ss_pred CCCccccchhHHHHHHhhhccCCCeEEEEEecCCCccccchhcHHHHHHHHHHhhh--------------------hccc
Q 047161 127 LDDLVEMNSRLKKLRLLLDAESRDVRMIGICGMGGVELSEKDGLIALQKQLLSKTL--------------------MEID 186 (720)
Q Consensus 127 ~~~~vG~~~~~~~i~~~L~~~~~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~--------------------~~~~ 186 (720)
.+++||-+..++.|.+.+..+. --..+-++|..|++.+. +...+.+.+. ....
T Consensus 15 FdEVIGQe~Vv~~L~~aL~~gR-L~HAyLFtGPpGvGKTT------lAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h 87 (830)
T PRK07003 15 FASLVGQEHVVRALTHALDGGR-LHHAYLFTGTRGVGKTT------LSRIFAKALNCETGVTSQPCGVCRACREIDEGRF 87 (830)
T ss_pred HHHHcCcHHHHHHHHHHHhcCC-CCeEEEEECCCCCCHHH------HHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCC
Confidence 3679999999999988885332 12344589999983332 1111111110 0000
Q ss_pred c---eecc-chhhHHHHHHHHh--------cCCeEEEEecCCcHH--HHHHHhccCCCCCCCCeEEEEcCChh-hhhhcc
Q 047161 187 I---EIRN-DFDGIKMIKRELR--------RRNVLVVIDDAVHIR--QLNRLAGKHSWFGSGSRIIIPTRDEH-LLRTLR 251 (720)
Q Consensus 187 ~---~~~~-~~~~~~~l~~~l~--------~kr~LlVLDdv~~~~--~~~~l~~~~~~~~~gsrIivTTR~~~-v~~~~~ 251 (720)
. +++. ....++.+++.+. ++.-++|+|+|+... .++.|...+.......++|+||.+.+ +.....
T Consensus 88 ~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KIp~TIr 167 (830)
T PRK07003 88 VDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVL 167 (830)
T ss_pred ceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhccchhh
Confidence 0 1100 0122333433332 344578899998653 47888777765556788877777643 332221
Q ss_pred c-cceEecCCCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHhCCCc
Q 047161 252 V-DGVYKVEKLDDDEALELFNKRAFDGQPSKDYVELIKRIVKYADGLP 298 (720)
Q Consensus 252 ~-~~~~~l~~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~i~~~c~glP 298 (720)
. -..|+++.++.++..+.+.+.+-...... -.+..+.|++.++|..
T Consensus 168 SRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~i-d~eAL~lIA~~A~Gsm 214 (830)
T PRK07003 168 SRCLQFNLKQMPAGHIVSHLERILGEERIAF-EPQALRLLARAAQGSM 214 (830)
T ss_pred hheEEEecCCcCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCH
Confidence 1 24789999999999988887654321111 1234566778887754
No 89
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.46 E-value=0.017 Score=33.56 Aligned_cols=20 Identities=30% Similarity=0.514 Sum_probs=14.9
Q ss_pred ccEEECCCCCCccccccccC
Q 047161 623 LKKLNLRRNNFVSLRGTINH 642 (720)
Q Consensus 623 L~~L~Ls~n~l~~lp~~i~~ 642 (720)
|++|+|++|+++.+|.++++
T Consensus 2 L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp ESEEEETSSEESEEGTTTTT
T ss_pred ccEEECCCCcCEeCChhhcC
Confidence 57788888888888866554
No 90
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.44 E-value=0.02 Score=33.17 Aligned_cols=21 Identities=24% Similarity=0.585 Sum_probs=11.8
Q ss_pred CCcEEeccCCCCCcccCCCCCC
Q 047161 497 GLVFLNLNDCKILVRLPSTING 518 (720)
Q Consensus 497 ~L~~L~Ls~n~~~~~lp~~i~~ 518 (720)
+|++|+|++|.+ ..+|.+|++
T Consensus 1 ~L~~Ldls~n~l-~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNL-TSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEE-SEEGTTTTT
T ss_pred CccEEECCCCcC-EeCChhhcC
Confidence 356666666653 356665543
No 91
>PRK08727 hypothetical protein; Validated
Probab=94.44 E-value=1.4 Score=43.80 Aligned_cols=138 Identities=17% Similarity=0.117 Sum_probs=75.9
Q ss_pred EEEEEecCCCccccchhcHHHHHHHHHHhhhhcc-cceeccchhhHHHHHHHHh--cCCeEEEEecCCcH---HHHH-HH
Q 047161 152 RMIGICGMGGVELSEKDGLIALQKQLLSKTLMEI-DIEIRNDFDGIKMIKRELR--RRNVLVVIDDAVHI---RQLN-RL 224 (720)
Q Consensus 152 ~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~~-~~~~~~~~~~~~~l~~~l~--~kr~LlVLDdv~~~---~~~~-~l 224 (720)
..+.|+|..|. +..++...+..++.... .....+..+....+.+.+. .+--+||+||+... ..|+ .+
T Consensus 42 ~~l~l~G~~G~------GKThL~~a~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~l~~~dlLiIDDi~~l~~~~~~~~~l 115 (233)
T PRK08727 42 DWLYLSGPAGT------GKTHLALALCAAAEQAGRSSAYLPLQAAAGRLRDALEALEGRSLVALDGLESIAGQREDEVAL 115 (233)
T ss_pred CeEEEECCCCC------CHHHHHHHHHHHHHHcCCcEEEEeHHHhhhhHHHHHHHHhcCCEEEEeCcccccCChHHHHHH
Confidence 45899999999 45555555555432221 1111122222333333222 24468999998743 2233 22
Q ss_pred hccCCC-CCCCCeEEEEcCC---------hhhhhhccccceEecCCCCHHHHHHHHHHHhcCC--CCCchHHHHHHHHHH
Q 047161 225 AGKHSW-FGSGSRIIIPTRD---------EHLLRTLRVDGVYKVEKLDDDEALELFNKRAFDG--QPSKDYVELIKRIVK 292 (720)
Q Consensus 225 ~~~~~~-~~~gsrIivTTR~---------~~v~~~~~~~~~~~l~~L~~~~s~~Lf~~~af~~--~~~~~~~~~~~~i~~ 292 (720)
...+.. ...|..||+||+. .++...++....+++++++.++-.+++.++|... ..+ .+...-+++
T Consensus 116 f~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~a~~~~l~l~---~e~~~~La~ 192 (233)
T PRK08727 116 FDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRERAQRRGLALD---EAAIDWLLT 192 (233)
T ss_pred HHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHH
Confidence 222111 1346679999984 2333333334588999999999999999877643 222 233455666
Q ss_pred HhCCCc
Q 047161 293 YADGLP 298 (720)
Q Consensus 293 ~c~glP 298 (720)
.+.|-.
T Consensus 193 ~~~rd~ 198 (233)
T PRK08727 193 HGEREL 198 (233)
T ss_pred hCCCCH
Confidence 666543
No 92
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.38 E-value=0.11 Score=46.07 Aligned_cols=80 Identities=15% Similarity=0.163 Sum_probs=45.8
Q ss_pred hccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCCCcccC-cCcCCCCCCCEEeccCcccccCCccccCCcCCc
Q 047161 492 IELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMP-ESLGQMESLEELDVSGTVIRQPVPSIFFPSRIL 570 (720)
Q Consensus 492 i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp-~~~~~L~~L~~L~L~~n~l~~~~~~~~~~~~~L 570 (720)
|...++|+.+.+..+ ....-...+.++++|+.+.+..+ +..++ ..+.++++|+.+.+.. .+..+....+..+++|
T Consensus 8 F~~~~~l~~i~~~~~-~~~I~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 8 FYNCSNLESITFPNT-IKKIGENAFSNCTSLKSINFPNN--LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL 83 (129)
T ss_dssp TTT-TT--EEEETST---EE-TTTTTT-TT-SEEEESST--TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred HhCCCCCCEEEECCC-eeEeChhhccccccccccccccc--ccccceeeeecccccccccccc-cccccccccccccccc
Confidence 667778888888753 23333345677778999988774 44444 4577787888888865 5555566666655788
Q ss_pred eEEEe
Q 047161 571 KVYLF 575 (720)
Q Consensus 571 ~~L~l 575 (720)
+.+.+
T Consensus 84 ~~i~~ 88 (129)
T PF13306_consen 84 KNIDI 88 (129)
T ss_dssp CEEEE
T ss_pred ccccc
Confidence 87777
No 93
>PRK09087 hypothetical protein; Validated
Probab=94.33 E-value=0.53 Score=46.41 Aligned_cols=135 Identities=16% Similarity=0.099 Sum_probs=76.8
Q ss_pred eEEEEEecCCCccccchhcHHHHHHHHHHhhhhcccceeccchhhHHHHHHHHhcCCeEEEEecCCc----HHHHHHHhc
Q 047161 151 VRMIGICGMGGVELSEKDGLIALQKQLLSKTLMEIDIEIRNDFDGIKMIKRELRRRNVLVVIDDAVH----IRQLNRLAG 226 (720)
Q Consensus 151 ~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVLDdv~~----~~~~~~l~~ 226 (720)
-+.+.|||..|.+. .++.+.+... .+.. ..+.......+-..+.+ -+|++||+.. .+.+-.+..
T Consensus 44 ~~~l~l~G~~GsGK------ThLl~~~~~~-~~~~---~i~~~~~~~~~~~~~~~--~~l~iDDi~~~~~~~~~lf~l~n 111 (226)
T PRK09087 44 SPVVVLAGPVGSGK------THLASIWREK-SDAL---LIHPNEIGSDAANAAAE--GPVLIEDIDAGGFDETGLFHLIN 111 (226)
T ss_pred CCeEEEECCCCCCH------HHHHHHHHHh-cCCE---EecHHHcchHHHHhhhc--CeEEEECCCCCCCCHHHHHHHHH
Confidence 35689999999944 4444444333 1111 11111122222222322 4788899953 233333332
Q ss_pred cCCCCCCCCeEEEEcC---------ChhhhhhccccceEecCCCCHHHHHHHHHHHhcCC--CCCchHHHHHHHHHHHhC
Q 047161 227 KHSWFGSGSRIIIPTR---------DEHLLRTLRVDGVYKVEKLDDDEALELFNKRAFDG--QPSKDYVELIKRIVKYAD 295 (720)
Q Consensus 227 ~~~~~~~gsrIivTTR---------~~~v~~~~~~~~~~~l~~L~~~~s~~Lf~~~af~~--~~~~~~~~~~~~i~~~c~ 295 (720)
... ..|..||+|++ ..++...+....++++++++.++-.+++.+++-.. ..+ +++..-+++.+.
T Consensus 112 ~~~--~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~~~~~~l~---~ev~~~La~~~~ 186 (226)
T PRK09087 112 SVR--QAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLFADRQLYVD---PHVVYYLVSRME 186 (226)
T ss_pred HHH--hCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHhh
Confidence 222 34677999887 34455555556799999999999999999887433 222 344555666666
Q ss_pred CCchHHH
Q 047161 296 GLPFALE 302 (720)
Q Consensus 296 glPLai~ 302 (720)
|-.-++.
T Consensus 187 r~~~~l~ 193 (226)
T PRK09087 187 RSLFAAQ 193 (226)
T ss_pred hhHHHHH
Confidence 6554444
No 94
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=94.26 E-value=1.2 Score=46.82 Aligned_cols=167 Identities=17% Similarity=0.171 Sum_probs=90.7
Q ss_pred CCCccccchhHHHHHHhhhccCCCeEEEEEecCCCccccchhcHHHHHHHHHHhhhhcc---c-c--eeccc--------
Q 047161 127 LDDLVEMNSRLKKLRLLLDAESRDVRMIGICGMGGVELSEKDGLIALQKQLLSKTLMEI---D-I--EIRND-------- 192 (720)
Q Consensus 127 ~~~~vG~~~~~~~i~~~L~~~~~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~~---~-~--~~~~~-------- 192 (720)
.++++|++..++.+..++.. +..+.+-++|..|.+.+ .+.+.+.+.+.... . . +..+.
T Consensus 14 ~~~~~g~~~~~~~L~~~~~~--~~~~~lll~Gp~GtGKT------~la~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~ 85 (337)
T PRK12402 14 LEDILGQDEVVERLSRAVDS--PNLPHLLVQGPPGSGKT------AAVRALARELYGDPWENNFTEFNVADFFDQGKKYL 85 (337)
T ss_pred HHHhcCCHHHHHHHHHHHhC--CCCceEEEECCCCCCHH------HHHHHHHHHhcCcccccceEEechhhhhhcchhhh
Confidence 36789999999999888753 34445779999999333 22222222211100 0 0 00000
Q ss_pred -----------------hhhHHHHHHHH---------hcCCeEEEEecCCcH--HHHHHHhccCCCCCCCCeEEEEcCCh
Q 047161 193 -----------------FDGIKMIKREL---------RRRNVLVVIDDAVHI--RQLNRLAGKHSWFGSGSRIIIPTRDE 244 (720)
Q Consensus 193 -----------------~~~~~~l~~~l---------~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIivTTR~~ 244 (720)
......+++.+ .+.+-+||+||+... +..+.+...+.......++|+||...
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~ 165 (337)
T PRK12402 86 VEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQP 165 (337)
T ss_pred hcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCCh
Confidence 00112222221 134458999999754 33445555444444567788877543
Q ss_pred -hhhhhcc-ccceEecCCCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHhCCCchHHH
Q 047161 245 -HLLRTLR-VDGVYKVEKLDDDEALELFNKRAFDGQPSKDYVELIKRIVKYADGLPFALE 302 (720)
Q Consensus 245 -~v~~~~~-~~~~~~l~~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~i~~~c~glPLai~ 302 (720)
.+..... -...+++.+++.++..+.+.+.+-..... --.+....+++.++|.+-.+.
T Consensus 166 ~~~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~-~~~~al~~l~~~~~gdlr~l~ 224 (337)
T PRK12402 166 SKLIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVD-YDDDGLELIAYYAGGDLRKAI 224 (337)
T ss_pred hhCchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHH
Confidence 2322221 12467889999999888888765433111 113445677788888664443
No 95
>PRK04195 replication factor C large subunit; Provisional
Probab=94.16 E-value=1 Score=50.05 Aligned_cols=167 Identities=16% Similarity=0.130 Sum_probs=94.7
Q ss_pred CCCCccccchhHHHHHHhhhcc--CCCeEEEEEecCCCccccchhcHHHHHHHHHHhhhhccccee--cc---chhhHHH
Q 047161 126 ILDDLVEMNSRLKKLRLLLDAE--SRDVRMIGICGMGGVELSEKDGLIALQKQLLSKTLMEIDIEI--RN---DFDGIKM 198 (720)
Q Consensus 126 ~~~~~vG~~~~~~~i~~~L~~~--~~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~~~~~~--~~---~~~~~~~ 198 (720)
..++++|.+..++.+..++..- ....+.+-|+|..|+ +...+.+.+..++ +...... .+ .+.....
T Consensus 12 ~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~------GKTtla~ala~el-~~~~ielnasd~r~~~~i~~~ 84 (482)
T PRK04195 12 TLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGV------GKTSLAHALANDY-GWEVIELNASDQRTADVIERV 84 (482)
T ss_pred CHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCC------CHHHHHHHHHHHc-CCCEEEEcccccccHHHHHHH
Confidence 3467999999999999988532 122677889999999 4444445555542 2111111 11 1111111
Q ss_pred HHHHH-----h-cCCeEEEEecCCcHH------HHHHHhccCCCCCCCCeEEEEcCChh-hhh-hc-cccceEecCCCCH
Q 047161 199 IKREL-----R-RRNVLVVIDDAVHIR------QLNRLAGKHSWFGSGSRIIIPTRDEH-LLR-TL-RVDGVYKVEKLDD 263 (720)
Q Consensus 199 l~~~l-----~-~kr~LlVLDdv~~~~------~~~~l~~~~~~~~~gsrIivTTR~~~-v~~-~~-~~~~~~~l~~L~~ 263 (720)
+.... . .++-+||+|+++... .+..+...+. ..+..||+|+.+.. +.. .. .....+++.+++.
T Consensus 85 i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~--~~~~~iIli~n~~~~~~~k~Lrsr~~~I~f~~~~~ 162 (482)
T PRK04195 85 AGEAATSGSLFGARRKLILLDEVDGIHGNEDRGGARAILELIK--KAKQPIILTANDPYDPSLRELRNACLMIEFKRLST 162 (482)
T ss_pred HHHhhccCcccCCCCeEEEEecCcccccccchhHHHHHHHHHH--cCCCCEEEeccCccccchhhHhccceEEEecCCCH
Confidence 21111 1 267789999998642 2455554444 23445777765432 111 11 1234788999999
Q ss_pred HHHHHHHHHHhcCCCCCchHHHHHHHHHHHhCCCchHHH
Q 047161 264 DEALELFNKRAFDGQPSKDYVELIKRIVKYADGLPFALE 302 (720)
Q Consensus 264 ~~s~~Lf~~~af~~~~~~~~~~~~~~i~~~c~glPLai~ 302 (720)
++....+.+.+......-+ .+....|++.++|-.-++.
T Consensus 163 ~~i~~~L~~i~~~egi~i~-~eaL~~Ia~~s~GDlR~ai 200 (482)
T PRK04195 163 RSIVPVLKRICRKEGIECD-DEALKEIAERSGGDLRSAI 200 (482)
T ss_pred HHHHHHHHHHHHHcCCCCC-HHHHHHHHHHcCCCHHHHH
Confidence 9988888776644311111 2456777888888654443
No 96
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=93.97 E-value=1.6 Score=45.49 Aligned_cols=166 Identities=14% Similarity=0.151 Sum_probs=94.6
Q ss_pred CCCCccccchhHHHHHHhhhccCCCeEEEEEecCCCccccchhcHHHHHHHHHHhhhhccc----cee-----ccchhhH
Q 047161 126 ILDDLVEMNSRLKKLRLLLDAESRDVRMIGICGMGGVELSEKDGLIALQKQLLSKTLMEID----IEI-----RNDFDGI 196 (720)
Q Consensus 126 ~~~~~vG~~~~~~~i~~~L~~~~~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~~~----~~~-----~~~~~~~ 196 (720)
..++++|++..++.+..++.. .....+-|+|..|.+ ...+.+.+..++..... ... .......
T Consensus 15 ~~~~~~g~~~~~~~l~~~i~~--~~~~~~ll~G~~G~G------Kt~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~ 86 (319)
T PRK00440 15 TLDEIVGQEEIVERLKSYVKE--KNMPHLLFAGPPGTG------KTTAALALARELYGEDWRENFLELNASDERGIDVIR 86 (319)
T ss_pred cHHHhcCcHHHHHHHHHHHhC--CCCCeEEEECCCCCC------HHHHHHHHHHHHcCCccccceEEeccccccchHHHH
Confidence 345689999999999888853 334457899999984 33444444444322111 111 0111111
Q ss_pred HHHHHHHh------cCCeEEEEecCCcH--HHHHHHhccCCCCCCCCeEEEEcCCh-hhhhhc-cccceEecCCCCHHHH
Q 047161 197 KMIKRELR------RRNVLVVIDDAVHI--RQLNRLAGKHSWFGSGSRIIIPTRDE-HLLRTL-RVDGVYKVEKLDDDEA 266 (720)
Q Consensus 197 ~~l~~~l~------~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIivTTR~~-~v~~~~-~~~~~~~l~~L~~~~s 266 (720)
+.+.+... ..+-++++|+++.. +..+.+...+....+.+++|+++... .+.... .-...+++++++.++.
T Consensus 87 ~~i~~~~~~~~~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~~~~~l~~~ei 166 (319)
T PRK00440 87 NKIKEFARTAPVGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCAVFRFSPLKKEAV 166 (319)
T ss_pred HHHHHHHhcCCCCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhheeeeCCCCHHHH
Confidence 23333322 23558899998743 34556665555555667777776432 222211 1123688999999998
Q ss_pred HHHHHHHhcCCCCCchHHHHHHHHHHHhCCCchH
Q 047161 267 LELFNKRAFDGQPSKDYVELIKRIVKYADGLPFA 300 (720)
Q Consensus 267 ~~Lf~~~af~~~~~~~~~~~~~~i~~~c~glPLa 300 (720)
.....+.+-.....- -.+....+++.++|.+--
T Consensus 167 ~~~l~~~~~~~~~~i-~~~al~~l~~~~~gd~r~ 199 (319)
T PRK00440 167 AERLRYIAENEGIEI-TDDALEAIYYVSEGDMRK 199 (319)
T ss_pred HHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHH
Confidence 888887664331110 123456778888887654
No 97
>PRK08084 DNA replication initiation factor; Provisional
Probab=93.94 E-value=1.4 Score=43.76 Aligned_cols=139 Identities=17% Similarity=0.132 Sum_probs=75.1
Q ss_pred CeEEEEEecCCCccccchhcHHHHHHHHHHhhhhc-ccceeccchh---hHHHHHHHHhcCCeEEEEecCCcH---HHHH
Q 047161 150 DVRMIGICGMGGVELSEKDGLIALQKQLLSKTLME-IDIEIRNDFD---GIKMIKRELRRRNVLVVIDDAVHI---RQLN 222 (720)
Q Consensus 150 ~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~-~~~~~~~~~~---~~~~l~~~l~~kr~LlVLDdv~~~---~~~~ 222 (720)
..+.+-|+|..|.+ ..++...+...+... ......+.+. ....+.+.+.+ --++++|||... .+|+
T Consensus 44 ~~~~l~l~Gp~G~G------KThLl~a~~~~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~-~dlliiDdi~~~~~~~~~~ 116 (235)
T PRK08084 44 HSGYIYLWSREGAG------RSHLLHAACAELSQRGRAVGYVPLDKRAWFVPEVLEGMEQ-LSLVCIDNIECIAGDELWE 116 (235)
T ss_pred CCCeEEEECCCCCC------HHHHHHHHHHHHHhCCCeEEEEEHHHHhhhhHHHHHHhhh-CCEEEEeChhhhcCCHHHH
Confidence 34578899999994 445555555442211 0111111111 12233333332 247889999653 3344
Q ss_pred HHh-ccCCC-CCCC-CeEEEEcCCh---------hhhhhccccceEecCCCCHHHHHHHHHHHhcCC--CCCchHHHHHH
Q 047161 223 RLA-GKHSW-FGSG-SRIIIPTRDE---------HLLRTLRVDGVYKVEKLDDDEALELFNKRAFDG--QPSKDYVELIK 288 (720)
Q Consensus 223 ~l~-~~~~~-~~~g-srIivTTR~~---------~v~~~~~~~~~~~l~~L~~~~s~~Lf~~~af~~--~~~~~~~~~~~ 288 (720)
... ..+.. ...| .++|+||+.. .+...+....++++++++.++-.+.+.++|-.. ..+ ++...
T Consensus 117 ~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~~l~---~~v~~ 193 (235)
T PRK08084 117 MAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQLRARLRGFELP---EDVGR 193 (235)
T ss_pred HHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHHHHHHHHcCCCCC---HHHHH
Confidence 222 11111 1134 3789999743 444455555789999999999999988766432 222 23445
Q ss_pred HHHHHhCCCc
Q 047161 289 RIVKYADGLP 298 (720)
Q Consensus 289 ~i~~~c~glP 298 (720)
-+++.+.|-.
T Consensus 194 ~L~~~~~~d~ 203 (235)
T PRK08084 194 FLLKRLDREM 203 (235)
T ss_pred HHHHhhcCCH
Confidence 5666665544
No 98
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=93.76 E-value=1.1 Score=51.12 Aligned_cols=111 Identities=14% Similarity=-0.004 Sum_probs=65.6
Q ss_pred hHHHHHHHHhcCCeEEEEecCCcHH--HHHHHhccCCCCCCCCeEEE--EcCChhhhh-hcc-ccceEecCCCCHHHHHH
Q 047161 195 GIKMIKRELRRRNVLVVIDDAVHIR--QLNRLAGKHSWFGSGSRIII--PTRDEHLLR-TLR-VDGVYKVEKLDDDEALE 268 (720)
Q Consensus 195 ~~~~l~~~l~~kr~LlVLDdv~~~~--~~~~l~~~~~~~~~gsrIiv--TTR~~~v~~-~~~-~~~~~~l~~L~~~~s~~ 268 (720)
.+..+.+.+++++++++-|+.|..+ .|+.+...+....+...|++ ||++..... ... --..+.+.+++.+|.++
T Consensus 281 ~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~ 360 (615)
T TIGR02903 281 LQNKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIAL 360 (615)
T ss_pred HHHHHHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHH
Confidence 4667778888888888877776543 38888777766666665665 677543211 111 11356789999999999
Q ss_pred HHHHHhcCCCCCchHHHHHHHHHHHhCCCchHHHHhhh
Q 047161 269 LFNKRAFDGQPSKDYVELIKRIVKYADGLPFALETLGS 306 (720)
Q Consensus 269 Lf~~~af~~~~~~~~~~~~~~i~~~c~glPLai~~~g~ 306 (720)
++.+.+-.....-. .+....+.+++..-+-|+..++.
T Consensus 361 Il~~~a~~~~v~ls-~eal~~L~~ys~~gRraln~L~~ 397 (615)
T TIGR02903 361 IVLNAAEKINVHLA-AGVEELIARYTIEGRKAVNILAD 397 (615)
T ss_pred HHHHHHHHcCCCCC-HHHHHHHHHCCCcHHHHHHHHHH
Confidence 99886542211000 23334444444433445544443
No 99
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=93.57 E-value=1.7 Score=46.83 Aligned_cols=160 Identities=16% Similarity=0.257 Sum_probs=88.3
Q ss_pred CCCccccchhHHHHHHhhhc-----------cCCCeEEEEEecCCCccccchhcHHHHHHHHHHhhhhcccceeccc---
Q 047161 127 LDDLVEMNSRLKKLRLLLDA-----------ESRDVRMIGICGMGGVELSEKDGLIALQKQLLSKTLMEIDIEIRND--- 192 (720)
Q Consensus 127 ~~~~vG~~~~~~~i~~~L~~-----------~~~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~~~~~~~~~--- 192 (720)
.++++|+++.++++.+.+.. +-...+-|-++|..|.+ ...+.+.+..+ ...........
T Consensus 130 ~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtG------KT~lAkaia~~-~~~~~i~v~~~~l~ 202 (389)
T PRK03992 130 YEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTG------KTLLAKAVAHE-TNATFIRVVGSELV 202 (389)
T ss_pred HHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCC------hHHHHHHHHHH-hCCCEEEeehHHHh
Confidence 35688999999999876531 11234557889999983 33444444443 22111111000
Q ss_pred ----hhhHHHHHHHH----hcCCeEEEEecCCcH-------------HH---HHHHhccCCCC--CCCCeEEEEcCChhh
Q 047161 193 ----FDGIKMIKREL----RRRNVLVVIDDAVHI-------------RQ---LNRLAGKHSWF--GSGSRIIIPTRDEHL 246 (720)
Q Consensus 193 ----~~~~~~l~~~l----~~kr~LlVLDdv~~~-------------~~---~~~l~~~~~~~--~~gsrIivTTR~~~v 246 (720)
.+....++..+ .....+|++||++.. +. +..+....... ..+-+||.||...+.
T Consensus 203 ~~~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~~~~ 282 (389)
T PRK03992 203 QKFIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNRIDI 282 (389)
T ss_pred HhhccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEEecCChhh
Confidence 01112233222 245689999999754 11 12222222221 235568888875443
Q ss_pred hhh-----ccccceEecCCCCHHHHHHHHHHHhcCCC--CCchHHHHHHHHHHHhCCC
Q 047161 247 LRT-----LRVDGVYKVEKLDDDEALELFNKRAFDGQ--PSKDYVELIKRIVKYADGL 297 (720)
Q Consensus 247 ~~~-----~~~~~~~~l~~L~~~~s~~Lf~~~af~~~--~~~~~~~~~~~i~~~c~gl 297 (720)
... -..+..++++..+.++-.++|..++.+.. ...++. .+++.+.|.
T Consensus 283 ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~~~----~la~~t~g~ 336 (389)
T PRK03992 283 LDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDLE----ELAELTEGA 336 (389)
T ss_pred CCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCCHH----HHHHHcCCC
Confidence 221 13466899999999999999998876542 223443 445555554
No 100
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=93.41 E-value=1.3 Score=46.39 Aligned_cols=156 Identities=15% Similarity=0.235 Sum_probs=87.9
Q ss_pred CCccccchhHHHHHHhhhccCCCeEEEEEecCCCccccchhcHHHHHHHHHHhhhhcccceeccchhhHHHHHH------
Q 047161 128 DDLVEMNSRLKKLRLLLDAESRDVRMIGICGMGGVELSEKDGLIALQKQLLSKTLMEIDIEIRNDFDGIKMIKR------ 201 (720)
Q Consensus 128 ~~~vG~~~~~~~i~~~L~~~~~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~------ 201 (720)
++++|-+..+.++++ ...+.-+-.||.+|++.+ .+.+-|... .+......+......+.+++
T Consensus 30 ~HLlg~~~~lrr~v~-----~~~l~SmIl~GPPG~GKT------TlA~liA~~-~~~~f~~~sAv~~gvkdlr~i~e~a~ 97 (436)
T COG2256 30 EHLLGEGKPLRRAVE-----AGHLHSMILWGPPGTGKT------TLARLIAGT-TNAAFEALSAVTSGVKDLREIIEEAR 97 (436)
T ss_pred HhhhCCCchHHHHHh-----cCCCceeEEECCCCCCHH------HHHHHHHHh-hCCceEEeccccccHHHHHHHHHHHH
Confidence 456777766666653 455666678999999433 333333332 33322222222222232322
Q ss_pred --HHhcCCeEEEEecCCc--HHHHHHHhccCCCCCCCCeEEE--EcCChhhhh--h-ccccceEecCCCCHHHHHHHHHH
Q 047161 202 --ELRRRNVLVVIDDAVH--IRQLNRLAGKHSWFGSGSRIII--PTRDEHLLR--T-LRVDGVYKVEKLDDDEALELFNK 272 (720)
Q Consensus 202 --~l~~kr~LlVLDdv~~--~~~~~~l~~~~~~~~~gsrIiv--TTR~~~v~~--~-~~~~~~~~l~~L~~~~s~~Lf~~ 272 (720)
+..|+|.+|.+|.|.. ..|-+.+.... ..|.-|+| ||-+..-.- . ..-..+|++++|+.+|-.++..+
T Consensus 98 ~~~~~gr~tiLflDEIHRfnK~QQD~lLp~v---E~G~iilIGATTENPsF~ln~ALlSR~~vf~lk~L~~~di~~~l~r 174 (436)
T COG2256 98 KNRLLGRRTILFLDEIHRFNKAQQDALLPHV---ENGTIILIGATTENPSFELNPALLSRARVFELKPLSSEDIKKLLKR 174 (436)
T ss_pred HHHhcCCceEEEEehhhhcChhhhhhhhhhh---cCCeEEEEeccCCCCCeeecHHHhhhhheeeeecCCHHHHHHHHHH
Confidence 2347899999999974 44556555444 46777766 666553311 1 11135899999999999999988
Q ss_pred HhcCC--CCC---chH-HHHHHHHHHHhCCCc
Q 047161 273 RAFDG--QPS---KDY-VELIKRIVKYADGLP 298 (720)
Q Consensus 273 ~af~~--~~~---~~~-~~~~~~i~~~c~glP 298 (720)
-+-.. ... ..+ ++.-.-++..+.|--
T Consensus 175 a~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~ 206 (436)
T COG2256 175 ALLDEERGLGGQIIVLDEEALDYLVRLSNGDA 206 (436)
T ss_pred HHhhhhcCCCcccccCCHHHHHHHHHhcCchH
Confidence 33211 111 111 234455677777743
No 101
>PTZ00202 tuzin; Provisional
Probab=93.40 E-value=1.1 Score=47.85 Aligned_cols=146 Identities=14% Similarity=0.157 Sum_probs=84.6
Q ss_pred ccCCCCCccccchhHHHHHHhhhccC-CCeEEEEEecCCCcccc-----------------chhcHHHHHHHHHHhhhhc
Q 047161 123 TLGILDDLVEMNSRLKKLRLLLDAES-RDVRMIGICGMGGVELS-----------------EKDGLIALQKQLLSKTLME 184 (720)
Q Consensus 123 ~~~~~~~~vG~~~~~~~i~~~L~~~~-~~~~vi~I~G~gGi~vs-----------------~~~~~~~~~~~il~~~~~~ 184 (720)
.+.+...++||+.+...+...|...+ ...+++.|.|++|.+.| +..+...+...++.+ ++.
T Consensus 257 lPa~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~~~qL~vNprg~eElLr~LL~A-LGV 335 (550)
T PTZ00202 257 APAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEGMPAVFVDVRGTEDTLRSVVKA-LGV 335 (550)
T ss_pred CCCCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcCCceEEEECCCCHHHHHHHHHHH-cCC
Confidence 45567899999999999999986333 33568899999999222 223567777777777 443
Q ss_pred ccceeccchhhHHHHHHHH-----h-cCCeEEEEe--cCCcHHH-HHHHhccCCCCCCCCeEEEEcCChhhhhhccc---
Q 047161 185 IDIEIRNDFDGIKMIKREL-----R-RRNVLVVID--DAVHIRQ-LNRLAGKHSWFGSGSRIIIPTRDEHLLRTLRV--- 252 (720)
Q Consensus 185 ~~~~~~~~~~~~~~l~~~l-----~-~kr~LlVLD--dv~~~~~-~~~l~~~~~~~~~gsrIivTTR~~~v~~~~~~--- 252 (720)
... ....++.+.|.+.+ . |++.+||+- +=.+..- ..+. -.+.+.-.-+.|++---.+.+....-.
T Consensus 336 ~p~--~~k~dLLrqIqeaLl~~~~e~GrtPVLII~lreg~~l~rvyne~-v~la~drr~ch~v~evpleslt~~~~~lpr 412 (550)
T PTZ00202 336 PNV--EACGDLLDFISEACRRAKKMNGETPLLVLKLREGSSLQRVYNEV-VALACDRRLCHVVIEVPLESLTIANTLLPR 412 (550)
T ss_pred CCc--ccHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCcHHHHHHHH-HHHHccchhheeeeeehHhhcchhcccCcc
Confidence 211 12234445555444 2 677777763 1111111 1111 112222345667776555554322211
Q ss_pred cceEecCCCCHHHHHHHHHH
Q 047161 253 DGVYKVEKLDDDEALELFNK 272 (720)
Q Consensus 253 ~~~~~l~~L~~~~s~~Lf~~ 272 (720)
-+-|-++..+.++|.+.-.+
T Consensus 413 ldf~~vp~fsr~qaf~y~~h 432 (550)
T PTZ00202 413 LDFYLVPNFSRSQAFAYTQH 432 (550)
T ss_pred ceeEecCCCCHHHHHHHHhh
Confidence 13688999999999876543
No 102
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.37 E-value=5 Score=42.81 Aligned_cols=167 Identities=13% Similarity=0.128 Sum_probs=96.1
Q ss_pred CCCccccchhHHHHHHhhhccCCCeEEEEEecCCCccccchhcHHHHHHHHHHhhhhcc--------------------c
Q 047161 127 LDDLVEMNSRLKKLRLLLDAESRDVRMIGICGMGGVELSEKDGLIALQKQLLSKTLMEI--------------------D 186 (720)
Q Consensus 127 ~~~~vG~~~~~~~i~~~L~~~~~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~~--------------------~ 186 (720)
.++++|-+..++.+.+.+..+ .-...+-++|..|++. ..+.+.+...+.... .
T Consensus 15 ~~~iiGq~~~~~~l~~~~~~~-~~~h~~L~~Gp~G~GK------Ttla~~la~~l~c~~~~~~~pc~~c~~c~~~~~~~~ 87 (363)
T PRK14961 15 FRDIIGQKHIVTAISNGLSLG-RIHHAWLLSGTRGVGK------TTIARLLAKSLNCQNGITSNPCRKCIICKEIEKGLC 87 (363)
T ss_pred hhhccChHHHHHHHHHHHHcC-CCCeEEEEecCCCCCH------HHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCC
Confidence 367899999999888877532 2234567999999833 333333333321100 0
Q ss_pred ceec--c--chhhHHHHHH---HH-----hcCCeEEEEecCCcHH--HHHHHhccCCCCCCCCeEEEEcCCh-hhhhhcc
Q 047161 187 IEIR--N--DFDGIKMIKR---EL-----RRRNVLVVIDDAVHIR--QLNRLAGKHSWFGSGSRIIIPTRDE-HLLRTLR 251 (720)
Q Consensus 187 ~~~~--~--~~~~~~~l~~---~l-----~~kr~LlVLDdv~~~~--~~~~l~~~~~~~~~gsrIivTTR~~-~v~~~~~ 251 (720)
.+.. + .....+.+++ .+ .+++-++|+|++.... .++.+...+.......++|++|.+. .+.....
T Consensus 88 ~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~~tI~ 167 (363)
T PRK14961 88 LDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPKTIL 167 (363)
T ss_pred CceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhhHHHH
Confidence 0000 0 0012233333 22 2345589999998654 4777777776555667777776543 3333221
Q ss_pred -ccceEecCCCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHhCCCchHH
Q 047161 252 -VDGVYKVEKLDDDEALELFNKRAFDGQPSKDYVELIKRIVKYADGLPFAL 301 (720)
Q Consensus 252 -~~~~~~l~~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~i~~~c~glPLai 301 (720)
--..+++++++.++..+...+.+-.....- -.+....+++.++|.|-.+
T Consensus 168 SRc~~~~~~~l~~~el~~~L~~~~~~~g~~i-~~~al~~ia~~s~G~~R~a 217 (363)
T PRK14961 168 SRCLQFKLKIISEEKIFNFLKYILIKESIDT-DEYALKLIAYHAHGSMRDA 217 (363)
T ss_pred hhceEEeCCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHH
Confidence 124789999999998888776553321111 1234566888899987543
No 103
>PRK05642 DNA replication initiation factor; Validated
Probab=93.27 E-value=3.8 Score=40.61 Aligned_cols=137 Identities=19% Similarity=0.172 Sum_probs=76.0
Q ss_pred EEEEEecCCCccccchhcHHHHHHHHHHhhhhc-ccceeccchhhH---HHHHHHHhcCCeEEEEecCCcH---HHHHH-
Q 047161 152 RMIGICGMGGVELSEKDGLIALQKQLLSKTLME-IDIEIRNDFDGI---KMIKRELRRRNVLVVIDDAVHI---RQLNR- 223 (720)
Q Consensus 152 ~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~-~~~~~~~~~~~~---~~l~~~l~~kr~LlVLDdv~~~---~~~~~- 223 (720)
..+.|||..|+ +..++.+.+..++... ...-..+.++.. ..+.+.+++-. ++|+||+... .+|+.
T Consensus 46 ~~l~l~G~~G~------GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~~d-~LiiDDi~~~~~~~~~~~~ 118 (234)
T PRK05642 46 SLIYLWGKDGV------GRSHLLQAACLRFEQRGEPAVYLPLAELLDRGPELLDNLEQYE-LVCLDDLDVIAGKADWEEA 118 (234)
T ss_pred CeEEEECCCCC------CHHHHHHHHHHHHHhCCCcEEEeeHHHHHhhhHHHHHhhhhCC-EEEEechhhhcCChHHHHH
Confidence 56789999999 4555555555543221 111111222222 23444454443 5788999633 34433
Q ss_pred HhccCCC-CCCCCeEEEEcCChh---------hhhhccccceEecCCCCHHHHHHHHHHHhcCC--CCCchHHHHHHHHH
Q 047161 224 LAGKHSW-FGSGSRIIIPTRDEH---------LLRTLRVDGVYKVEKLDDDEALELFNKRAFDG--QPSKDYVELIKRIV 291 (720)
Q Consensus 224 l~~~~~~-~~~gsrIivTTR~~~---------v~~~~~~~~~~~l~~L~~~~s~~Lf~~~af~~--~~~~~~~~~~~~i~ 291 (720)
+...+.. ...|.+||+||+... +...++...++++++++.++-.+...+++... ..+ ++...-++
T Consensus 119 Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ka~~~~~~l~---~ev~~~L~ 195 (234)
T PRK05642 119 LFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLRASRRGLHLT---DEVGHFIL 195 (234)
T ss_pred HHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHH
Confidence 3333322 134678888887422 22223334578999999999999988776543 222 24455566
Q ss_pred HHhCCCc
Q 047161 292 KYADGLP 298 (720)
Q Consensus 292 ~~c~glP 298 (720)
+.+.|-.
T Consensus 196 ~~~~~d~ 202 (234)
T PRK05642 196 TRGTRSM 202 (234)
T ss_pred HhcCCCH
Confidence 6665544
No 104
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=93.26 E-value=0.86 Score=40.82 Aligned_cols=107 Identities=13% Similarity=0.134 Sum_probs=57.9
Q ss_pred cccchhHHHHHHhhhccCCCeEEEEEecCCCccccchhcHHHHHHHHHHhhhhccc-c-ee-----ccchhhHH------
Q 047161 131 VEMNSRLKKLRLLLDAESRDVRMIGICGMGGVELSEKDGLIALQKQLLSKTLMEID-I-EI-----RNDFDGIK------ 197 (720)
Q Consensus 131 vG~~~~~~~i~~~L~~~~~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~~~-~-~~-----~~~~~~~~------ 197 (720)
+|++..+..+...+.. ..-+.+.|+|..|++ ...+.+.+...+..... . .. ........
T Consensus 1 ~~~~~~~~~i~~~~~~--~~~~~v~i~G~~G~G------KT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 72 (151)
T cd00009 1 VGQEEAIEALREALEL--PPPKNLLLYGPPGTG------KTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFL 72 (151)
T ss_pred CchHHHHHHHHHHHhC--CCCCeEEEECCCCCC------HHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhhh
Confidence 4677788888877743 244578899999994 44455555555311100 0 00 00000010
Q ss_pred ---HHHHHHhcCCeEEEEecCCcH-----HHHHHHhccCCCC---CCCCeEEEEcCChh
Q 047161 198 ---MIKRELRRRNVLVVIDDAVHI-----RQLNRLAGKHSWF---GSGSRIIIPTRDEH 245 (720)
Q Consensus 198 ---~l~~~l~~kr~LlVLDdv~~~-----~~~~~l~~~~~~~---~~gsrIivTTR~~~ 245 (720)
........+..++|+||++.. ..+..+....... ..+.+||+||....
T Consensus 73 ~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 73 VRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred HhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 011222457789999999853 2233333333222 36778888887654
No 105
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=93.15 E-value=3.7 Score=40.21 Aligned_cols=120 Identities=19% Similarity=0.280 Sum_probs=65.6
Q ss_pred CeEEEEEecCCCccccchhcHHHHHHHHHHhhhhcc-ccee--ccchhh------------HHHHHHHHhcCCeEEEEec
Q 047161 150 DVRMIGICGMGGVELSEKDGLIALQKQLLSKTLMEI-DIEI--RNDFDG------------IKMIKRELRRRNVLVVIDD 214 (720)
Q Consensus 150 ~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~~-~~~~--~~~~~~------------~~~l~~~l~~kr~LlVLDd 214 (720)
....+-|+|..|. |..++.+.+...+.... ...+ .+.++. ...+++.+++-. +|++||
T Consensus 33 ~~~~l~l~G~~G~------GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~~~~~~~~~~~~~~~~~D-lL~iDD 105 (219)
T PF00308_consen 33 RYNPLFLYGPSGL------GKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFADALRDGEIEEFKDRLRSAD-LLIIDD 105 (219)
T ss_dssp SSSEEEEEESTTS------SHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHHHHTTSHHHHHHHHCTSS-EEEEET
T ss_pred CCCceEEECCCCC------CHHHHHHHHHHHHHhccccccceeecHHHHHHHHHHHHHcccchhhhhhhhcCC-EEEEec
Confidence 3455789999999 55566666666543321 1111 111121 234455556444 678899
Q ss_pred CCcH---HHHHH-HhccCCC-CCCCCeEEEEcCCh---------hhhhhccccceEecCCCCHHHHHHHHHHHhcC
Q 047161 215 AVHI---RQLNR-LAGKHSW-FGSGSRIIIPTRDE---------HLLRTLRVDGVYKVEKLDDDEALELFNKRAFD 276 (720)
Q Consensus 215 v~~~---~~~~~-l~~~~~~-~~~gsrIivTTR~~---------~v~~~~~~~~~~~l~~L~~~~s~~Lf~~~af~ 276 (720)
|... ..|+. +...+.. ...|.+||+|++.. ++...+...-++++++++.++-.+++.++|-.
T Consensus 106 i~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~ 181 (219)
T PF00308_consen 106 IQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRILQKKAKE 181 (219)
T ss_dssp GGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHHHHHHHHH
T ss_pred chhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHHHHHHHHH
Confidence 9753 22322 2222211 13577899999543 22333344458999999999999999888753
No 106
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=93.09 E-value=1.1 Score=46.93 Aligned_cols=140 Identities=11% Similarity=0.104 Sum_probs=76.5
Q ss_pred CCCCCccccchhHHHHHHhhhccCCCeEEEEEecCCCccccchhcHHHHHHHHHHhhhhccccee--cc--chhhHHHHH
Q 047161 125 GILDDLVEMNSRLKKLRLLLDAESRDVRMIGICGMGGVELSEKDGLIALQKQLLSKTLMEIDIEI--RN--DFDGIKMIK 200 (720)
Q Consensus 125 ~~~~~~vG~~~~~~~i~~~L~~~~~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~~~~~~--~~--~~~~~~~l~ 200 (720)
...++++|.+...+.+..++..+ .-..++-++|..|++. ..+.+.+..++ +...... .+ .+...+.+.
T Consensus 18 ~~~~~~~~~~~~~~~l~~~~~~~-~~~~~lll~G~~G~GK------T~la~~l~~~~-~~~~~~i~~~~~~~~~i~~~l~ 89 (316)
T PHA02544 18 STIDECILPAADKETFKSIVKKG-RIPNMLLHSPSPGTGK------TTVAKALCNEV-GAEVLFVNGSDCRIDFVRNRLT 89 (316)
T ss_pred CcHHHhcCcHHHHHHHHHHHhcC-CCCeEEEeeCcCCCCH------HHHHHHHHHHh-CccceEeccCcccHHHHHHHHH
Confidence 34477999999999999888532 2345677799999943 33444444432 1111111 11 111112222
Q ss_pred HHH-----hcCCeEEEEecCCcH---HHHHHHhccCCCCCCCCeEEEEcCChhhh-hhc-cccceEecCCCCHHHHHHHH
Q 047161 201 REL-----RRRNVLVVIDDAVHI---RQLNRLAGKHSWFGSGSRIIIPTRDEHLL-RTL-RVDGVYKVEKLDDDEALELF 270 (720)
Q Consensus 201 ~~l-----~~kr~LlVLDdv~~~---~~~~~l~~~~~~~~~gsrIivTTR~~~v~-~~~-~~~~~~~l~~L~~~~s~~Lf 270 (720)
+.. .+.+-++|+||++.. +..+.+...+.....+.++|+||...... ... .--..+.++..+.++..+++
T Consensus 90 ~~~~~~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~~~i~~~~p~~~~~~~il 169 (316)
T PHA02544 90 RFASTVSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRCRVIDFGVPTKEEQIEMM 169 (316)
T ss_pred HHHHhhcccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhceEEEeCCCCHHHHHHHH
Confidence 222 134557889999755 22344444344445678899998754321 111 11135677777777777665
Q ss_pred HH
Q 047161 271 NK 272 (720)
Q Consensus 271 ~~ 272 (720)
..
T Consensus 170 ~~ 171 (316)
T PHA02544 170 KQ 171 (316)
T ss_pred HH
Confidence 43
No 107
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.08 E-value=2.4 Score=47.10 Aligned_cols=165 Identities=13% Similarity=0.149 Sum_probs=95.6
Q ss_pred CCccccchhHHHHHHhhhccCCCe-EEEEEecCCCccccchhcHHHHHHHHHHhhhhc-------------------ccc
Q 047161 128 DDLVEMNSRLKKLRLLLDAESRDV-RMIGICGMGGVELSEKDGLIALQKQLLSKTLME-------------------IDI 187 (720)
Q Consensus 128 ~~~vG~~~~~~~i~~~L~~~~~~~-~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~-------------------~~~ 187 (720)
+++||-+..++.+...+.. +.+ ..+-++|..|++.+. +.+.+...+... ...
T Consensus 14 ~dvvGq~~v~~~L~~~i~~--~~l~ha~Lf~GppGtGKTT------lA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~h~ 85 (504)
T PRK14963 14 DEVVGQEHVKEVLLAALRQ--GRLGHAYLFSGPRGVGKTT------TARLIAMAVNCSGEDPKPCGECESCLAVRRGAHP 85 (504)
T ss_pred HHhcChHHHHHHHHHHHHc--CCCCeEEEEECCCCCCHHH------HHHHHHHHHhccCCCCCCCCcChhhHHHhcCCCC
Confidence 5689988888888877753 233 345799999994332 222222221100 000
Q ss_pred ee---c-cchhhH---HHHHHHH-----hcCCeEEEEecCCcH--HHHHHHhccCCCCCCCCeEEEEcC-Chhhhhhccc
Q 047161 188 EI---R-NDFDGI---KMIKREL-----RRRNVLVVIDDAVHI--RQLNRLAGKHSWFGSGSRIIIPTR-DEHLLRTLRV 252 (720)
Q Consensus 188 ~~---~-~~~~~~---~~l~~~l-----~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIivTTR-~~~v~~~~~~ 252 (720)
+. . ...... +.+++.+ .+++-++|+|+++.. ..++.|...+........+|++|. ...+...+..
T Consensus 86 dv~el~~~~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~S 165 (504)
T PRK14963 86 DVLEIDAASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILS 165 (504)
T ss_pred ceEEecccccCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHhc
Confidence 00 0 001122 2233333 246668999999854 457788777765555666665554 3444333222
Q ss_pred -cceEecCCCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHhCCCchHH
Q 047161 253 -DGVYKVEKLDDDEALELFNKRAFDGQPSKDYVELIKRIVKYADGLPFAL 301 (720)
Q Consensus 253 -~~~~~l~~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~i~~~c~glPLai 301 (720)
...|++.+++.++..+.+.+.+-.....- -.+....|++.++|.+--+
T Consensus 166 Rc~~~~f~~ls~~el~~~L~~i~~~egi~i-~~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 166 RTQHFRFRRLTEEEIAGKLRRLLEAEGREA-EPEALQLVARLADGAMRDA 214 (504)
T ss_pred ceEEEEecCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHH
Confidence 24799999999999999988765431111 1244567888899987544
No 108
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.06 E-value=0.056 Score=50.67 Aligned_cols=81 Identities=16% Similarity=0.352 Sum_probs=60.9
Q ss_pred cccEEECCCCCCcccc-ccccCCCCCceeecccccc-----ccccCCcccccceEeeecCcccccch-hhccCchhHhhh
Q 047161 622 NLKKLNLRRNNFVSLR-GTINHLPKFKHLKLDDCKR-----LRSLSELPSDIKKVRVHGCTSLATIS-DALRSCNSATSR 694 (720)
Q Consensus 622 ~L~~L~Ls~n~l~~lp-~~i~~l~~L~~L~L~~c~~-----L~~lp~lp~~L~~L~l~~c~~L~~lp-~~~~~~~~L~~l 694 (720)
.++.++-++..+...- ..+.++++++.|.+.+|.. |+.+..+.++|+.|++++|+.+++-. .++..+++|+.
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~- 180 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRR- 180 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHH-
Confidence 4577887777665332 3567888999999999985 45566677899999999999998876 67788888888
Q ss_pred hhhcccchh
Q 047161 695 IFCINCPKL 703 (720)
Q Consensus 695 ~~~~nc~~l 703 (720)
+..++.|..
T Consensus 181 L~l~~l~~v 189 (221)
T KOG3864|consen 181 LHLYDLPYV 189 (221)
T ss_pred HHhcCchhh
Confidence 444566655
No 109
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.87 E-value=0.0038 Score=60.90 Aligned_cols=99 Identities=22% Similarity=0.206 Sum_probs=59.4
Q ss_pred CCCceeeecCCCCCCCCCCCCcccCccchhhhHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCCCcc
Q 047161 456 APNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLEN 535 (720)
Q Consensus 456 l~~L~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~l~~ 535 (720)
+.+.+.|+..||. |..+.- ...++.|++|.||-|++ ..+ ..+..+++|+.|.|+.|.+ ..
T Consensus 18 l~~vkKLNcwg~~-------L~DIsi----------c~kMp~lEVLsLSvNkI-ssL-~pl~rCtrLkElYLRkN~I-~s 77 (388)
T KOG2123|consen 18 LENVKKLNCWGCG-------LDDISI----------CEKMPLLEVLSLSVNKI-SSL-APLQRCTRLKELYLRKNCI-ES 77 (388)
T ss_pred HHHhhhhcccCCC-------ccHHHH----------HHhcccceeEEeecccc-ccc-hhHHHHHHHHHHHHHhccc-cc
Confidence 4456667777765 333322 55677788888887773 343 3356777788888877643 22
Q ss_pred cCc--CcCCCCCCCEEeccCcccccCCcc-----ccCCcCCceEEE
Q 047161 536 MPE--SLGQMESLEELDVSGTVIRQPVPS-----IFFPSRILKVYL 574 (720)
Q Consensus 536 lp~--~~~~L~~L~~L~L~~n~l~~~~~~-----~~~~~~~L~~L~ 574 (720)
+.+ -+.++++|+.|-|..|.-.+..+. ....+++|+.|+
T Consensus 78 ldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 78 LDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred HHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 322 255777778887777765554332 222346666665
No 110
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=92.68 E-value=4.7 Score=43.33 Aligned_cols=94 Identities=19% Similarity=0.136 Sum_probs=60.7
Q ss_pred cCCeEEEEecCCcH--HHHHHHhccCCCCCCCCeEEEEcCCh-hhhhhccc-cceEecCCCCHHHHHHHHHHHhcCCCCC
Q 047161 205 RRNVLVVIDDAVHI--RQLNRLAGKHSWFGSGSRIIIPTRDE-HLLRTLRV-DGVYKVEKLDDDEALELFNKRAFDGQPS 280 (720)
Q Consensus 205 ~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIivTTR~~-~v~~~~~~-~~~~~l~~L~~~~s~~Lf~~~af~~~~~ 280 (720)
+++-++++|+++.. .....|...+....++..+|++|.+. .+...... -..+.+++++.++..+.+..... . +
T Consensus 116 ~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~--~-~ 192 (394)
T PRK07940 116 GRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDG--V-D 192 (394)
T ss_pred CCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhcC--C-C
Confidence 34457888999864 34566666665555677777666654 44433321 24889999999999988874321 1 1
Q ss_pred chHHHHHHHHHHHhCCCchHHHHh
Q 047161 281 KDYVELIKRIVKYADGLPFALETL 304 (720)
Q Consensus 281 ~~~~~~~~~i~~~c~glPLai~~~ 304 (720)
.+.+..++..++|.|.....+
T Consensus 193 ---~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 193 ---PETARRAARASQGHIGRARRL 213 (394)
T ss_pred ---HHHHHHHHHHcCCCHHHHHHH
Confidence 244667899999999755444
No 111
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=92.56 E-value=3.3 Score=39.47 Aligned_cols=89 Identities=25% Similarity=0.265 Sum_probs=60.9
Q ss_pred cCCeEEEEecCCcH--HHHHHHhccCCCCCCCCeEEEEcCCh-hhhhhcc-ccceEecCCCCHHHHHHHHHHHhcCCCCC
Q 047161 205 RRNVLVVIDDAVHI--RQLNRLAGKHSWFGSGSRIIIPTRDE-HLLRTLR-VDGVYKVEKLDDDEALELFNKRAFDGQPS 280 (720)
Q Consensus 205 ~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIivTTR~~-~v~~~~~-~~~~~~l~~L~~~~s~~Lf~~~af~~~~~ 280 (720)
+.+-++|+||+... +.++.|...+....+.+.+|++|++. .+..... -...+++.+++.++..+.+.++ + ..
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~~~~~~~l~~~---g-i~ 170 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEALLQWLIRQ---G-IS 170 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCCHHHHHHHHHHc---C-CC
Confidence 45668899998754 44777777776655677777777653 3332221 1248999999999988888776 1 11
Q ss_pred chHHHHHHHHHHHhCCCchH
Q 047161 281 KDYVELIKRIVKYADGLPFA 300 (720)
Q Consensus 281 ~~~~~~~~~i~~~c~glPLa 300 (720)
.+....+++.++|.|..
T Consensus 171 ---~~~~~~i~~~~~g~~r~ 187 (188)
T TIGR00678 171 ---EEAAELLLALAGGSPGA 187 (188)
T ss_pred ---HHHHHHHHHHcCCCccc
Confidence 34577889999998753
No 112
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.45 E-value=9.2 Score=43.49 Aligned_cols=167 Identities=18% Similarity=0.130 Sum_probs=96.2
Q ss_pred CCCccccchhHHHHHHhhhccCCCeEEEEEecCCCccccchhcHHHHHHHHHHhhhh--------------------ccc
Q 047161 127 LDDLVEMNSRLKKLRLLLDAESRDVRMIGICGMGGVELSEKDGLIALQKQLLSKTLM--------------------EID 186 (720)
Q Consensus 127 ~~~~vG~~~~~~~i~~~L~~~~~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~--------------------~~~ 186 (720)
.+++||.+..++.+..++..+ .-...+-++|..|++.+ .+.+.+.+.+.. ...
T Consensus 14 FddVIGQe~vv~~L~~aI~~g-rl~HAyLF~GPpGvGKT------TlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~h 86 (702)
T PRK14960 14 FNELVGQNHVSRALSSALERG-RLHHAYLFTGTRGVGKT------TIARILAKCLNCETGVTSTPCEVCATCKAVNEGRF 86 (702)
T ss_pred HHHhcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHH------HHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCC
Confidence 367999999989998888532 22356678999999433 222222222111 000
Q ss_pred cee---c-cchhhHHHHHHHH--------hcCCeEEEEecCCcH--HHHHHHhccCCCCCCCCeEEEEcCChh-hhhhc-
Q 047161 187 IEI---R-NDFDGIKMIKREL--------RRRNVLVVIDDAVHI--RQLNRLAGKHSWFGSGSRIIIPTRDEH-LLRTL- 250 (720)
Q Consensus 187 ~~~---~-~~~~~~~~l~~~l--------~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIivTTR~~~-v~~~~- 250 (720)
.+. . ......+.+|+.+ .+++-++|+|+|... ...+.|...+.....+.++|++|.+.. +....
T Consensus 87 pDviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kIp~TIl 166 (702)
T PRK14960 87 IDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVI 166 (702)
T ss_pred CceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhhhHHHH
Confidence 111 0 0012333344333 256668899999864 456777766665556677887776542 32111
Q ss_pred cccceEecCCCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHhCCCchHH
Q 047161 251 RVDGVYKVEKLDDDEALELFNKRAFDGQPSKDYVELIKRIVKYADGLPFAL 301 (720)
Q Consensus 251 ~~~~~~~l~~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~i~~~c~glPLai 301 (720)
.--..+++++++.++..+.+.+.+-+.....+ .+....|++.++|-+-.+
T Consensus 167 SRCq~feFkpLs~eEI~k~L~~Il~kEgI~id-~eAL~~IA~~S~GdLRdA 216 (702)
T PRK14960 167 SRCLQFTLRPLAVDEITKHLGAILEKEQIAAD-QDAIWQIAESAQGSLRDA 216 (702)
T ss_pred HhhheeeccCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHcCCCHHHH
Confidence 11247899999999988888776543321111 233466788888866433
No 113
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=92.36 E-value=0.037 Score=54.06 Aligned_cols=181 Identities=18% Similarity=0.150 Sum_probs=107.9
Q ss_pred hccCCCCcEEeccCCCCCcc----cCCCCCCCCCCCEEeccCCCCCcc----cCc-------CcCCCCCCCEEeccCccc
Q 047161 492 IELLTGLVFLNLNDCKILVR----LPSTINGWKSLRTVNLSRCSKLEN----MPE-------SLGQMESLEELDVSGTVI 556 (720)
Q Consensus 492 i~~l~~L~~L~Ls~n~~~~~----lp~~i~~l~~L~~L~L~~~~~l~~----lp~-------~~~~L~~L~~L~L~~n~l 556 (720)
+..+..+..++||+|.+... +...|.+-.+|+..+++.- +++. +|+ .+-+||.|+..+||.|.+
T Consensus 26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~-ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAf 104 (388)
T COG5238 26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDA-FTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAF 104 (388)
T ss_pred HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhh-hhcccHHHHHHHHHHHHHHHhcCCcceeeecccccc
Confidence 45588899999999986543 3344556788999888863 4442 232 456899999999999987
Q ss_pred ccC-Ccc---ccCCcCCceEEEeecCCCCCCCCCccc-------------ccccccccccCCCCcccccCCCCC-CCCCC
Q 047161 557 RQP-VPS---IFFPSRILKVYLFVDTRDHRTSSSSWH-------------LWFPFSLMQKGSSDSMALMLPSLS-GLCSL 618 (720)
Q Consensus 557 ~~~-~~~---~~~~~~~L~~L~l~~~~~~~~~~~~~~-------------~l~~l~~l~l~~~~~~~~~~~~l~-~l~~L 618 (720)
..- |+. .....+.|.+|.+.+|+...+....+. .-++|+......|........... .+.+=
T Consensus 105 g~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh 184 (388)
T COG5238 105 GSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESH 184 (388)
T ss_pred CcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhh
Confidence 643 322 223348999999998887766444332 112333333333322221111000 00000
Q ss_pred CcccccEEECCCCCCcc--cc----ccccCCCCCceeeccccccc--------cccCCcccccceEeeecCc
Q 047161 619 TELNLKKLNLRRNNFVS--LR----GTINHLPKFKHLKLDDCKRL--------RSLSELPSDIKKVRVHGCT 676 (720)
Q Consensus 619 ~~L~L~~L~Ls~n~l~~--lp----~~i~~l~~L~~L~L~~c~~L--------~~lp~lp~~L~~L~l~~c~ 676 (720)
=+|+.+.+..|.+.. +. -.+..+.+|+.|+|.+|..- ..+|.+|. |+.|.+.+|-
T Consensus 185 --~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~-lrEL~lnDCl 253 (388)
T COG5238 185 --ENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNL-LRELRLNDCL 253 (388)
T ss_pred --cCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccch-hhhccccchh
Confidence 034777788887751 11 12356789999999998521 11244444 8888888884
No 114
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=92.34 E-value=2.4 Score=48.38 Aligned_cols=167 Identities=16% Similarity=0.133 Sum_probs=92.9
Q ss_pred CCCccccchhHHHHHHhhhccCCCeEEEEEecCCCccccchhcHHHHHHHHHHhhhh--------------------ccc
Q 047161 127 LDDLVEMNSRLKKLRLLLDAESRDVRMIGICGMGGVELSEKDGLIALQKQLLSKTLM--------------------EID 186 (720)
Q Consensus 127 ~~~~vG~~~~~~~i~~~L~~~~~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~--------------------~~~ 186 (720)
.+++||.+..++.|.+.+..+ .--..+-++|..|++.+. +.+.+.+.+.. ...
T Consensus 15 FddIIGQe~vv~~L~~ai~~~-rl~Ha~Lf~GP~GvGKTT------lAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~ 87 (709)
T PRK08691 15 FADLVGQEHVVKALQNALDEG-RLHHAYLLTGTRGVGKTT------IARILAKSLNCENAQHGEPCGVCQSCTQIDAGRY 87 (709)
T ss_pred HHHHcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCcHHH------HHHHHHHHhcccCCCCCCCCcccHHHHHHhccCc
Confidence 367999999999999888532 123456789999994332 22222222110 000
Q ss_pred ce---ec-cchhhHHHHHHHH--------hcCCeEEEEecCCcHH--HHHHHhccCCCCCCCCeEEEEcCCh-hhhhhc-
Q 047161 187 IE---IR-NDFDGIKMIKREL--------RRRNVLVVIDDAVHIR--QLNRLAGKHSWFGSGSRIIIPTRDE-HLLRTL- 250 (720)
Q Consensus 187 ~~---~~-~~~~~~~~l~~~l--------~~kr~LlVLDdv~~~~--~~~~l~~~~~~~~~gsrIivTTR~~-~v~~~~- 250 (720)
.+ .. .....++.+++.+ .+++-++|+|++.... ..+.|...+.......++|++|.+. ++....
T Consensus 88 ~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~kL~~TIr 167 (709)
T PRK08691 88 VDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVL 167 (709)
T ss_pred cceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCccccchHHH
Confidence 00 10 1112333444433 2566789999998643 3555665554444566777766543 332221
Q ss_pred cccceEecCCCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHhCCCchHH
Q 047161 251 RVDGVYKVEKLDDDEALELFNKRAFDGQPSKDYVELIKRIVKYADGLPFAL 301 (720)
Q Consensus 251 ~~~~~~~l~~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~i~~~c~glPLai 301 (720)
+--..|+++.++.++..+.+.+.+-.....- -.+....|++.++|-+.-+
T Consensus 168 SRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~i-d~eAL~~Ia~~A~GslRdA 217 (709)
T PRK08691 168 SRCLQFVLRNMTAQQVADHLAHVLDSEKIAY-EPPALQLLGRAAAGSMRDA 217 (709)
T ss_pred HHHhhhhcCCCCHHHHHHHHHHHHHHcCCCc-CHHHHHHHHHHhCCCHHHH
Confidence 1113678889999998888776553321111 1234567888888877433
No 115
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=92.29 E-value=0.01 Score=66.16 Aligned_cols=42 Identities=14% Similarity=0.301 Sum_probs=23.3
Q ss_pred cceEeeecCcccccchhhcc--CchhHhhhhhhcccchhHHHHHh
Q 047161 667 IKKVRVHGCTSLATISDALR--SCNSATSRIFCINCPKLILNWLQ 709 (720)
Q Consensus 667 L~~L~l~~c~~L~~lp~~~~--~~~~L~~l~~~~nc~~l~~~w~~ 709 (720)
++.|.+..|.....---... .+.++.. ....+|+.....+..
T Consensus 403 l~~L~l~~~~~~t~~~l~~~~~~~~~~~~-l~~~~~~~~~~~~~~ 446 (482)
T KOG1947|consen 403 LRVLNLSDCRLVTDKGLRCLADSCSNLKD-LDLSGCRVITLKSLE 446 (482)
T ss_pred cceEecccCccccccchHHHhhhhhcccc-CCccCcccccchhhh
Confidence 78888888875543321111 1555555 334467777655543
No 116
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=92.26 E-value=3 Score=41.12 Aligned_cols=166 Identities=17% Similarity=0.147 Sum_probs=81.2
Q ss_pred ccccchhH-HHHHHhhhccCCCeEEEEEecCCCccccchhcHHHHHHHHHHhhhhcc-cceeccchhhHHHHHHHHhcCC
Q 047161 130 LVEMNSRL-KKLRLLLDAESRDVRMIGICGMGGVELSEKDGLIALQKQLLSKTLMEI-DIEIRNDFDGIKMIKRELRRRN 207 (720)
Q Consensus 130 ~vG~~~~~-~~i~~~L~~~~~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~~-~~~~~~~~~~~~~l~~~l~~kr 207 (720)
+.|..... ..+.++.. +....+.+.|+|..|+ +..++...+..+..... .....+.......+ .. ....
T Consensus 21 ~~~~~~~~~~~l~~~~~-~~~~~~~~~l~G~~G~------GKT~La~ai~~~~~~~~~~~~~i~~~~~~~~~-~~-~~~~ 91 (227)
T PRK08903 21 VAGENAELVARLRELAA-GPVADRFFYLWGEAGS------GRSHLLQALVADASYGGRNARYLDAASPLLAF-DF-DPEA 91 (227)
T ss_pred ccCCcHHHHHHHHHHHh-ccCCCCeEEEECCCCC------CHHHHHHHHHHHHHhCCCcEEEEehHHhHHHH-hh-cccC
Confidence 34554444 33333332 2234456789999999 55556665655532211 11111211221111 11 2234
Q ss_pred eEEEEecCCcHH--HHHHHhccCCCC-CCCCe-EEEEcCChhhhh--------hccccceEecCCCCHHHHHHHHHHHhc
Q 047161 208 VLVVIDDAVHIR--QLNRLAGKHSWF-GSGSR-IIIPTRDEHLLR--------TLRVDGVYKVEKLDDDEALELFNKRAF 275 (720)
Q Consensus 208 ~LlVLDdv~~~~--~~~~l~~~~~~~-~~gsr-IivTTR~~~v~~--------~~~~~~~~~l~~L~~~~s~~Lf~~~af 275 (720)
-++|+||+.... +-+.+...+... ..|.. ||+|++...... .+.....++++++++++-..++.+.+-
T Consensus 92 ~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~~ 171 (227)
T PRK08903 92 ELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYELKPLSDADKIAALKAAAA 171 (227)
T ss_pred CEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHHHH
Confidence 478899997532 222333333211 23443 666666432211 222235789999998876666655332
Q ss_pred CC--CCCchHHHHHHHHHHHhCCCchHHHHhhhh
Q 047161 276 DG--QPSKDYVELIKRIVKYADGLPFALETLGSV 307 (720)
Q Consensus 276 ~~--~~~~~~~~~~~~i~~~c~glPLai~~~g~~ 307 (720)
.. ..+ ++....+++.+.|.+..++.+-..
T Consensus 172 ~~~v~l~---~~al~~L~~~~~gn~~~l~~~l~~ 202 (227)
T PRK08903 172 ERGLQLA---DEVPDYLLTHFRRDMPSLMALLDA 202 (227)
T ss_pred HcCCCCC---HHHHHHHHHhccCCHHHHHHHHHH
Confidence 11 111 234555666777777766554433
No 117
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.15 E-value=2.7 Score=47.48 Aligned_cols=169 Identities=14% Similarity=0.132 Sum_probs=96.6
Q ss_pred CCCccccchhHHHHHHhhhccCCCeEEEEEecCCCccccchhcHHHHHHHHHHhhhhc----------------------
Q 047161 127 LDDLVEMNSRLKKLRLLLDAESRDVRMIGICGMGGVELSEKDGLIALQKQLLSKTLME---------------------- 184 (720)
Q Consensus 127 ~~~~vG~~~~~~~i~~~L~~~~~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~---------------------- 184 (720)
.+++||-+..++.|.+.+..+. --..+-++|..|++.+ .+-+.+.+.+...
T Consensus 15 FddVIGQe~vv~~L~~al~~gR-LpHA~LFtGP~GvGKT------TLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~~I 87 (700)
T PRK12323 15 FTTLVGQEHVVRALTHALEQQR-LHHAYLFTGTRGVGKT------TLSRILAKSLNCTGADGEGGITAQPCGQCRACTEI 87 (700)
T ss_pred HHHHcCcHHHHHHHHHHHHhCC-CceEEEEECCCCCCHH------HHHHHHHHHhcCCCccccccCCCCCCcccHHHHHH
Confidence 3679999988888888885321 1234567999998322 2222222221110
Q ss_pred ---c---cceecc-chhhHHHHHHHH--------hcCCeEEEEecCCcH--HHHHHHhccCCCCCCCCeEEE-EcCChhh
Q 047161 185 ---I---DIEIRN-DFDGIKMIKREL--------RRRNVLVVIDDAVHI--RQLNRLAGKHSWFGSGSRIII-PTRDEHL 246 (720)
Q Consensus 185 ---~---~~~~~~-~~~~~~~l~~~l--------~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIiv-TTR~~~v 246 (720)
. ...++. ....++.+++.+ .++.-++|+|+|+.. ..++.|...+..-....++|+ ||...++
T Consensus 88 ~aG~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kL 167 (700)
T PRK12323 88 DAGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKI 167 (700)
T ss_pred HcCCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhh
Confidence 0 001100 012233333332 345668999999864 457888877765555666554 5555555
Q ss_pred hhhccc-cceEecCCCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHhCCCchHHHH
Q 047161 247 LRTLRV-DGVYKVEKLDDDEALELFNKRAFDGQPSKDYVELIKRIVKYADGLPFALET 303 (720)
Q Consensus 247 ~~~~~~-~~~~~l~~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~i~~~c~glPLai~~ 303 (720)
...... -..|.++.++.++..+.+.+.+-......+ .+..+.|++.++|.|.....
T Consensus 168 lpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~~d-~eAL~~IA~~A~Gs~RdALs 224 (700)
T PRK12323 168 PVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIAHE-VNALRLLAQAAQGSMRDALS 224 (700)
T ss_pred hhHHHHHHHhcccCCCChHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHcCCCHHHHHH
Confidence 443322 247899999999998888766533211111 23346788999998864443
No 118
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.04 E-value=0.0091 Score=58.35 Aligned_cols=79 Identities=27% Similarity=0.255 Sum_probs=50.7
Q ss_pred CCCCCceeeecCCCCCCCCCCCCcccCccchhhhHHHHhccCCCCcEEeccCCCCCcccCC--CCCCCCCCCEEeccCCC
Q 047161 454 TGAPNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILVRLPS--TINGWKSLRTVNLSRCS 531 (720)
Q Consensus 454 ~~l~~L~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~--~i~~l~~L~~L~L~~~~ 531 (720)
.+++.|++|.|+-|+ +..|.+ +..+++|+.|+|..|. +..+.+ .+.++++|++|.|..|.
T Consensus 38 ~kMp~lEVLsLSvNk-------IssL~p----------l~rCtrLkElYLRkN~-I~sldEL~YLknlpsLr~LWL~ENP 99 (388)
T KOG2123|consen 38 EKMPLLEVLSLSVNK-------ISSLAP----------LQRCTRLKELYLRKNC-IESLDELEYLKNLPSLRTLWLDENP 99 (388)
T ss_pred HhcccceeEEeeccc-------cccchh----------HHHHHHHHHHHHHhcc-cccHHHHHHHhcCchhhhHhhccCC
Confidence 467788888888776 445544 6667777778887776 333322 24567777888777776
Q ss_pred CCcccCc-----CcCCCCCCCEEe
Q 047161 532 KLENMPE-----SLGQMESLEELD 550 (720)
Q Consensus 532 ~l~~lp~-----~~~~L~~L~~L~ 550 (720)
-.+.-+. .+.-|++|+.||
T Consensus 100 Cc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 100 CCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred cccccchhHHHHHHHHcccchhcc
Confidence 6555443 244566777664
No 119
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=91.92 E-value=0.2 Score=52.33 Aligned_cols=115 Identities=18% Similarity=0.260 Sum_probs=74.2
Q ss_pred CceEeecCCCCCCCCcccHHHHHHHHhccceeEEeccCccc--------chhhhhhhcccCcccccccchHHHHHHHHHH
Q 047161 1 GVKIFEDHKELERGKAVSPGLFKAIEESRFSVVVFSRNYAY--------STWCLDELAKIPTVVRKQTRSFHEAFAKHEE 72 (720)
Q Consensus 1 gi~~f~d~~~l~~g~~~~~~l~~ai~~s~~~ivv~S~~ya~--------s~wcl~el~~ip~~vr~~~~~~~~~~~~~~~ 72 (720)
|.++|+|-++|..|.. .+.+++-|+.+|-+|.|+++|--. -.|.-.|++..-++-++.---|..||.--+.
T Consensus 639 GyrVFIDVdKL~AGKF-dssLlkni~aAkhFiLVLtP~sLDr~lnD~nCeDWVHKEl~~Afe~~KNIiPI~D~aFE~Pt~ 717 (832)
T KOG3678|consen 639 GYRVFIDVDKLYAGKF-DSSLLKNIQAAKHFILVLTPNSLDRLLNDDNCEDWVHKELKCAFEHQKNIIPIFDTAFEFPTK 717 (832)
T ss_pred CceEEEehhhhhcccc-cHHHHHHHHhhheeEEEeCcchHHHHhccccHHHHHHHHHHHHHHhcCCeeeeecccccCCCc
Confidence 7899999889999875 669999999999999999997533 2576777766544444444444555432211
Q ss_pred HhhhChHHHHHHHHHHHHhccCCcccccChhHHHHHHHHHHhhhhccCCCcc
Q 047161 73 AFRESTEKVQNWRHALTEVANPSGWHLKDRHEVEFIQEIVKEISRKKGPRTL 124 (720)
Q Consensus 73 ~~~~~~~~v~~w~~~l~~~~~~~g~~~~~~~e~~~i~~i~~~i~~~~~~~~~ 124 (720)
. + .--+.+..+..+.|......+.-.-+.++|.-+...++.+++
T Consensus 718 e-----d---~iPnDirmi~kyNGvKWvHdYQdA~maKvvRFitGe~nRttp 761 (832)
T KOG3678|consen 718 E-----D---QIPNDIRMITKYNGVKWVHDYQDACMAKVVRFITGELNRTTP 761 (832)
T ss_pred h-----h---cCcHHHHHHHhccCeeeehhhHHHHHHHHHHHHhccccCCCC
Confidence 1 1 111234444555665444455555677888877777765543
No 120
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=91.83 E-value=3.6 Score=45.65 Aligned_cols=166 Identities=15% Similarity=0.156 Sum_probs=96.2
Q ss_pred CCCccccchhHHHHHHhhhccCCCeEEEEEecCCCccccchhcHHHHHHHHHHhhhhc----------------------
Q 047161 127 LDDLVEMNSRLKKLRLLLDAESRDVRMIGICGMGGVELSEKDGLIALQKQLLSKTLME---------------------- 184 (720)
Q Consensus 127 ~~~~vG~~~~~~~i~~~L~~~~~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~---------------------- 184 (720)
..++||-+.-+..+...+..+ .-..-+-++|..|++.+. +.+-+.+.+...
T Consensus 20 f~dliGq~~vv~~L~~ai~~~-ri~~a~Lf~Gp~G~GKTT------~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~i~ 92 (507)
T PRK06645 20 FAELQGQEVLVKVLSYTILND-RLAGGYLLTGIRGVGKTT------SARIIAKAVNCSALITENTTIKTCEQCTNCISFN 92 (507)
T ss_pred HHHhcCcHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHH------HHHHHHHHhcCccccccCcCcCCCCCChHHHHHh
Confidence 367899888888887766432 122456689999983332 222222221100
Q ss_pred --cccee---c-cchhhHHHHHHHH--------hcCCeEEEEecCCcH--HHHHHHhccCCCCCCCCeEE-EEcCChhhh
Q 047161 185 --IDIEI---R-NDFDGIKMIKREL--------RRRNVLVVIDDAVHI--RQLNRLAGKHSWFGSGSRII-IPTRDEHLL 247 (720)
Q Consensus 185 --~~~~~---~-~~~~~~~~l~~~l--------~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIi-vTTR~~~v~ 247 (720)
...+. + ......+.+++.+ .+++-++|+|+++.. ..++.|...+....+..++| +||+...+.
T Consensus 93 ~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI~ 172 (507)
T PRK06645 93 NHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIP 172 (507)
T ss_pred cCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHhh
Confidence 00000 0 0112333344332 356778999999864 55888887776555566655 455655665
Q ss_pred hhccc-cceEecCCCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHhCCCchH
Q 047161 248 RTLRV-DGVYKVEKLDDDEALELFNKRAFDGQPSKDYVELIKRIVKYADGLPFA 300 (720)
Q Consensus 248 ~~~~~-~~~~~l~~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~i~~~c~glPLa 300 (720)
..... ...+++++++.++..+.+.+.+-.....-+ .+....|++.++|.+--
T Consensus 173 ~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi~ie-~eAL~~Ia~~s~GslR~ 225 (507)
T PRK06645 173 ATIISRCQRYDLRRLSFEEIFKLLEYITKQENLKTD-IEALRIIAYKSEGSARD 225 (507)
T ss_pred HHHHhcceEEEccCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHcCCCHHH
Confidence 44322 247899999999999999887754321111 23345688888887643
No 121
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=91.79 E-value=8.5 Score=41.76 Aligned_cols=176 Identities=18% Similarity=0.200 Sum_probs=90.3
Q ss_pred eEEEEEecCCCccccchhcHHHHHHHHHHhhhhcc-cce--eccchhh------------HHHHHHHHhcCCeEEEEecC
Q 047161 151 VRMIGICGMGGVELSEKDGLIALQKQLLSKTLMEI-DIE--IRNDFDG------------IKMIKRELRRRNVLVVIDDA 215 (720)
Q Consensus 151 ~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~~-~~~--~~~~~~~------------~~~l~~~l~~kr~LlVLDdv 215 (720)
...+-|+|..|. |..++.+.+...+.... ... ..+..+. ...+++.+++ .=+|||||+
T Consensus 136 ~n~l~l~G~~G~------GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~-~dlLiiDDi 208 (405)
T TIGR00362 136 YNPLFIYGGVGL------GKTHLLHAIGNEILENNPNAKVVYVSSEKFTNDFVNALRNNKMEEFKEKYRS-VDLLLIDDI 208 (405)
T ss_pred CCeEEEECCCCC------cHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHHHHHHHHcCCHHHHHHHHHh-CCEEEEehh
Confidence 345789999999 44455555555432211 011 1111111 1123333433 337889999
Q ss_pred CcHH---HH-HHHhccCCCC-CCCCeEEEEcCC-hh--------hhhhccccceEecCCCCHHHHHHHHHHHhcCC--CC
Q 047161 216 VHIR---QL-NRLAGKHSWF-GSGSRIIIPTRD-EH--------LLRTLRVDGVYKVEKLDDDEALELFNKRAFDG--QP 279 (720)
Q Consensus 216 ~~~~---~~-~~l~~~~~~~-~~gsrIivTTR~-~~--------v~~~~~~~~~~~l~~L~~~~s~~Lf~~~af~~--~~ 279 (720)
.... .+ +.+...+... ..|..||+||.. .. +...+....++++++.+.++-.+++.+.+-.. ..
T Consensus 209 ~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~~~~~~~~l 288 (405)
T TIGR00362 209 QFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQKKAEEEGLEL 288 (405)
T ss_pred hhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCC
Confidence 7431 11 2222222111 235568887763 11 22223333478999999999999999887543 22
Q ss_pred CchHHHHHHHHHHHhCCCchH----HHHhhhh--ccC--CCHHHHHHHHhhhh-----cCCchhHHHHHH
Q 047161 280 SKDYVELIKRIVKYADGLPFA----LETLGSV--LFG--RSVDGWRSTLERLN-----KHSADEILDVLE 336 (720)
Q Consensus 280 ~~~~~~~~~~i~~~c~glPLa----i~~~g~~--l~~--k~~~~W~~~l~~l~-----~~~~~~il~~L~ 336 (720)
+ +++...+++.+.|..-. +..+... +.+ -+.+..+.++...- ....+.|.++..
T Consensus 289 ~---~e~l~~ia~~~~~~~r~l~~~l~~l~~~a~~~~~~it~~~~~~~L~~~~~~~~~~it~~~I~~~Va 355 (405)
T TIGR00362 289 P---DEVLEFIAKNIRSNVRELEGALNRLLAYASLTGKPITLELAKEALKDLLRAKKKEITIENIQEVVA 355 (405)
T ss_pred C---HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhccccCCCCCHHHHHHHHH
Confidence 2 34556667777775543 2222211 122 26667777776431 123355666555
No 122
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=91.51 E-value=6.2 Score=44.52 Aligned_cols=120 Identities=11% Similarity=0.142 Sum_probs=66.9
Q ss_pred EEEEEecCCCccccchhcHHHHHHHHHHhhhhc---ccceeccchhhHHHHHHHHhcC-----------CeEEEEecCCc
Q 047161 152 RMIGICGMGGVELSEKDGLIALQKQLLSKTLME---IDIEIRNDFDGIKMIKRELRRR-----------NVLVVIDDAVH 217 (720)
Q Consensus 152 ~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~---~~~~~~~~~~~~~~l~~~l~~k-----------r~LlVLDdv~~ 217 (720)
..+-|+|-.|. +..++...|...+... ...--.+..+....+...++.+ -=+|||||+..
T Consensus 315 NpL~LyG~sGs------GKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~al~~~~~~~f~~~y~~~DLLlIDDIq~ 388 (617)
T PRK14086 315 NPLFIYGESGL------GKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRRRYREMDILLVDDIQF 388 (617)
T ss_pred CcEEEECCCCC------CHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHhccHHHHHHHhhcCCEEEEehhcc
Confidence 34789999998 5556666666653321 1111122222222222222221 23788999964
Q ss_pred H---HHHH-HHhccCCC-CCCCCeEEEEcCCh---------hhhhhccccceEecCCCCHHHHHHHHHHHhcCC
Q 047161 218 I---RQLN-RLAGKHSW-FGSGSRIIIPTRDE---------HLLRTLRVDGVYKVEKLDDDEALELFNKRAFDG 277 (720)
Q Consensus 218 ~---~~~~-~l~~~~~~-~~~gsrIivTTR~~---------~v~~~~~~~~~~~l~~L~~~~s~~Lf~~~af~~ 277 (720)
. +.|+ .+...+.. ...|..|||||+.. .+...+...-+++++..+.+.-..++.+++-..
T Consensus 389 l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka~~r 462 (617)
T PRK14086 389 LEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAVQE 462 (617)
T ss_pred ccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHHHHhc
Confidence 3 2222 22222211 13466788888752 233334445689999999999999999887544
No 123
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=91.16 E-value=4 Score=43.11 Aligned_cols=98 Identities=18% Similarity=0.137 Sum_probs=62.2
Q ss_pred cCCeEEEEecCCcH--HHHHHHhccCCCCCCCCeEEE-EcCChhhhhhccc-cceEecCCCCHHHHHHHHHHHhcCCCCC
Q 047161 205 RRNVLVVIDDAVHI--RQLNRLAGKHSWFGSGSRIII-PTRDEHLLRTLRV-DGVYKVEKLDDDEALELFNKRAFDGQPS 280 (720)
Q Consensus 205 ~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIiv-TTR~~~v~~~~~~-~~~~~l~~L~~~~s~~Lf~~~af~~~~~ 280 (720)
+++-++|+|+++.. ...+.|...+........+|+ |++-..+...... -..+++.+++.++..+.+.+.+....
T Consensus 140 g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~~-- 217 (351)
T PRK09112 140 GNWRIVIIDPADDMNRNAANAILKTLEEPPARALFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQG-- 217 (351)
T ss_pred CCceEEEEEchhhcCHHHHHHHHHHHhcCCCCceEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcccC--
Confidence 56678999999854 345666665554334555444 4444444433221 24899999999999999987432111
Q ss_pred chHHHHHHHHHHHhCCCchHHHHhh
Q 047161 281 KDYVELIKRIVKYADGLPFALETLG 305 (720)
Q Consensus 281 ~~~~~~~~~i~~~c~glPLai~~~g 305 (720)
--.+....+++.++|.|.....+.
T Consensus 218 -~~~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 218 -SDGEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred -CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 113345678999999998665443
No 124
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.89 E-value=11 Score=40.39 Aligned_cols=165 Identities=15% Similarity=0.167 Sum_probs=90.5
Q ss_pred CCCccccchhHHHHHHhhhccCCCeEEEEEecCCCccccchhcHHHHHHHHHHhhhhc------c--ccee---cc-chh
Q 047161 127 LDDLVEMNSRLKKLRLLLDAESRDVRMIGICGMGGVELSEKDGLIALQKQLLSKTLME------I--DIEI---RN-DFD 194 (720)
Q Consensus 127 ~~~~vG~~~~~~~i~~~L~~~~~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~------~--~~~~---~~-~~~ 194 (720)
.++++|.+..++.+.+.+..+ .-...+-++|..|++.+ .+.+.+...+... . .... .. ...
T Consensus 16 ~~~iig~~~~~~~l~~~i~~~-~~~~~~L~~G~~G~GKt------~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~ 88 (367)
T PRK14970 16 FDDVVGQSHITNTLLNAIENN-HLAQALLFCGPRGVGKT------TCARILARKINQPGYDDPNEDFSFNIFELDAASNN 88 (367)
T ss_pred HHhcCCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHH------HHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCC
Confidence 367899999999888888532 22346779999998444 3333333332110 0 0000 00 001
Q ss_pred hHHHHHHHH--------hcCCeEEEEecCCcH--HHHHHHhccCCCCCCCCeEEEEc-CChhhhhhcc-ccceEecCCCC
Q 047161 195 GIKMIKREL--------RRRNVLVVIDDAVHI--RQLNRLAGKHSWFGSGSRIIIPT-RDEHLLRTLR-VDGVYKVEKLD 262 (720)
Q Consensus 195 ~~~~l~~~l--------~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIivTT-R~~~v~~~~~-~~~~~~l~~L~ 262 (720)
..+.+++.+ .+++-++++|++... ..++.+...+........+|++| +...+..... -...++.++++
T Consensus 89 ~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~l~sr~~~v~~~~~~ 168 (367)
T PRK14970 89 SVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILSRCQIFDFKRIT 168 (367)
T ss_pred CHHHHHHHHHHHhhccccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHHHHhcceeEecCCcc
Confidence 112232222 245567999998753 34666665554333455655555 4334332221 12478999999
Q ss_pred HHHHHHHHHHHhcCCCCCchHHHHHHHHHHHhCCCch
Q 047161 263 DDEALELFNKRAFDGQPSKDYVELIKRIVKYADGLPF 299 (720)
Q Consensus 263 ~~~s~~Lf~~~af~~~~~~~~~~~~~~i~~~c~glPL 299 (720)
.++....+...+-.....- -.+....+++.++|-+-
T Consensus 169 ~~~l~~~l~~~~~~~g~~i-~~~al~~l~~~~~gdlr 204 (367)
T PRK14970 169 IKDIKEHLAGIAVKEGIKF-EDDALHIIAQKADGALR 204 (367)
T ss_pred HHHHHHHHHHHHHHcCCCC-CHHHHHHHHHhCCCCHH
Confidence 9998888887665431100 12445667777887554
No 125
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=90.79 E-value=2.4 Score=40.89 Aligned_cols=90 Identities=20% Similarity=0.461 Sum_probs=52.4
Q ss_pred CCCCccccchhHHHHHHhhhccCCCeEEEEEecCCCccccchhcHHHHHHHHHHhhhhccccee-ccchhhHHHHHHHHh
Q 047161 126 ILDDLVEMNSRLKKLRLLLDAESRDVRMIGICGMGGVELSEKDGLIALQKQLLSKTLMEIDIEI-RNDFDGIKMIKRELR 204 (720)
Q Consensus 126 ~~~~~vG~~~~~~~i~~~L~~~~~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~~~~~~-~~~~~~~~~l~~~l~ 204 (720)
.-.++||-++.++++.-.- .+.++.-+-|.||+|++.+. .+..+.+.++..-..+.-.+. .+.+.+++.+|++++
T Consensus 25 ~l~dIVGNe~tv~rl~via--~~gnmP~liisGpPG~GKTT--si~~LAr~LLG~~~ke~vLELNASdeRGIDvVRn~IK 100 (333)
T KOG0991|consen 25 VLQDIVGNEDTVERLSVIA--KEGNMPNLIISGPPGTGKTT--SILCLARELLGDSYKEAVLELNASDERGIDVVRNKIK 100 (333)
T ss_pred HHHHhhCCHHHHHHHHHHH--HcCCCCceEeeCCCCCchhh--HHHHHHHHHhChhhhhHhhhccCccccccHHHHHHHH
Confidence 3457899998888876554 45678888899999995443 233344444432111111111 123345565655553
Q ss_pred -----------cCCeEEEEecCCcHH
Q 047161 205 -----------RRNVLVVIDDAVHIR 219 (720)
Q Consensus 205 -----------~kr~LlVLDdv~~~~ 219 (720)
++-=.|+||..++..
T Consensus 101 ~FAQ~kv~lp~grhKIiILDEADSMT 126 (333)
T KOG0991|consen 101 MFAQKKVTLPPGRHKIIILDEADSMT 126 (333)
T ss_pred HHHHhhccCCCCceeEEEeeccchhh
Confidence 334468899998753
No 126
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=90.53 E-value=13 Score=40.93 Aligned_cols=97 Identities=14% Similarity=0.189 Sum_probs=59.7
Q ss_pred CeEEEEecCCcH---HH-HHHHhccCCC-CCCCCeEEEEcCC---------hhhhhhccccceEecCCCCHHHHHHHHHH
Q 047161 207 NVLVVIDDAVHI---RQ-LNRLAGKHSW-FGSGSRIIIPTRD---------EHLLRTLRVDGVYKVEKLDDDEALELFNK 272 (720)
Q Consensus 207 r~LlVLDdv~~~---~~-~~~l~~~~~~-~~~gsrIivTTR~---------~~v~~~~~~~~~~~l~~L~~~~s~~Lf~~ 272 (720)
.-+||+||+... +. .+.+...+.. ...|..||+|+.. +.+...+...-++.+++++.++-.+++.+
T Consensus 207 ~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~ 286 (450)
T PRK14087 207 NDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKK 286 (450)
T ss_pred CCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHH
Confidence 458889999643 22 2333333321 1345578888653 23333334445788999999999999998
Q ss_pred HhcCCCC-CchHHHHHHHHHHHhCCCchHHHH
Q 047161 273 RAFDGQP-SKDYVELIKRIVKYADGLPFALET 303 (720)
Q Consensus 273 ~af~~~~-~~~~~~~~~~i~~~c~glPLai~~ 303 (720)
++-.... ..--++...-|++.++|.|-.+..
T Consensus 287 ~~~~~gl~~~l~~evl~~Ia~~~~gd~R~L~g 318 (450)
T PRK14087 287 EIKNQNIKQEVTEEAINFISNYYSDDVRKIKG 318 (450)
T ss_pred HHHhcCCCCCCCHHHHHHHHHccCCCHHHHHH
Confidence 8743211 112245677788999998865543
No 127
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.53 E-value=8.6 Score=42.44 Aligned_cols=171 Identities=19% Similarity=0.164 Sum_probs=92.5
Q ss_pred CCCccccchhHHHHHHhhhccCCCe-EEEEEecCCCccccchhcHHHHHHHHHHhhhhc--------------------c
Q 047161 127 LDDLVEMNSRLKKLRLLLDAESRDV-RMIGICGMGGVELSEKDGLIALQKQLLSKTLME--------------------I 185 (720)
Q Consensus 127 ~~~~vG~~~~~~~i~~~L~~~~~~~-~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~--------------------~ 185 (720)
.+++||-+.-+..+...+.. +.+ ..+-++|..|++.+ .+.+-+...+... .
T Consensus 13 ~~divGq~~i~~~L~~~i~~--~~l~~~~Lf~GPpGtGKT------TlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~ 84 (472)
T PRK14962 13 FSEVVGQDHVKKLIINALKK--NSISHAYIFAGPRGTGKT------TVARILAKSLNCENRKGVEPCNECRACRSIDEGT 84 (472)
T ss_pred HHHccCcHHHHHHHHHHHHc--CCCCeEEEEECCCCCCHH------HHHHHHHHHhccccCCCCCCCcccHHHHHHhcCC
Confidence 36799988777777766642 334 45678999999433 2223333221110 0
Q ss_pred ---cceecc-chhhHHH---HHHHH-----hcCCeEEEEecCCcH--HHHHHHhccCCCCCCCCeEEE-EcCChhhhhhc
Q 047161 186 ---DIEIRN-DFDGIKM---IKREL-----RRRNVLVVIDDAVHI--RQLNRLAGKHSWFGSGSRIII-PTRDEHLLRTL 250 (720)
Q Consensus 186 ---~~~~~~-~~~~~~~---l~~~l-----~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIiv-TTR~~~v~~~~ 250 (720)
-..... .....+. +.+.. .+++-++|+|+++.. .+.+.+...+........+|+ ||....+....
T Consensus 85 ~~dv~el~aa~~~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Ilattn~~kl~~~L 164 (472)
T PRK14962 85 FMDVIELDAASNRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTNLEKVPPTI 164 (472)
T ss_pred CCccEEEeCcccCCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEEEeCChHhhhHHH
Confidence 001111 1122222 33332 245668999999754 346666666654334445444 44334443332
Q ss_pred cc-cceEecCCCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHhCC-CchHHHHhhh
Q 047161 251 RV-DGVYKVEKLDDDEALELFNKRAFDGQPSKDYVELIKRIVKYADG-LPFALETLGS 306 (720)
Q Consensus 251 ~~-~~~~~l~~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~i~~~c~g-lPLai~~~g~ 306 (720)
.. -..+++++++.++....+.+.+-.....- -.+....++++++| ++.|+..+..
T Consensus 165 ~SR~~vv~f~~l~~~el~~~L~~i~~~egi~i-~~eal~~Ia~~s~GdlR~aln~Le~ 221 (472)
T PRK14962 165 ISRCQVIEFRNISDELIIKRLQEVAEAEGIEI-DREALSFIAKRASGGLRDALTMLEQ 221 (472)
T ss_pred hcCcEEEEECCccHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 21 24789999999998888887664321111 12345567777765 4566655544
No 128
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.48 E-value=4 Score=47.84 Aligned_cols=165 Identities=18% Similarity=0.164 Sum_probs=95.3
Q ss_pred CCCccccchhHHHHHHhhhccCCCeE-EEEEecCCCccccchhcHHHHHHHHHHhhhhccc-------------------
Q 047161 127 LDDLVEMNSRLKKLRLLLDAESRDVR-MIGICGMGGVELSEKDGLIALQKQLLSKTLMEID------------------- 186 (720)
Q Consensus 127 ~~~~vG~~~~~~~i~~~L~~~~~~~~-vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~~~------------------- 186 (720)
..++||-+..++.+.+.+.. +.+. .+-++|..|++. ..+.+.+.+.+.....
T Consensus 15 FddIIGQe~Iv~~LknaI~~--~rl~HAyLFtGPpGtGK------TTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~ 86 (944)
T PRK14949 15 FEQMVGQSHVLHALTNALTQ--QRLHHAYLFTGTRGVGK------TSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGR 86 (944)
T ss_pred HHHhcCcHHHHHHHHHHHHh--CCCCeEEEEECCCCCCH------HHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCC
Confidence 36789999988888887743 3343 346899999833 3333333333211100
Q ss_pred ----ceeccc-hhhHHHHH---HHH-----hcCCeEEEEecCCcH--HHHHHHhccCCCCCCCCeEEEEcCC-hhhhhhc
Q 047161 187 ----IEIRND-FDGIKMIK---REL-----RRRNVLVVIDDAVHI--RQLNRLAGKHSWFGSGSRIIIPTRD-EHLLRTL 250 (720)
Q Consensus 187 ----~~~~~~-~~~~~~l~---~~l-----~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIivTTR~-~~v~~~~ 250 (720)
...... ...++.+| +.+ .+++-++|+|++... +.++.|...+.......++|++|.+ ..+....
T Consensus 87 ~~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe~~kLl~TI 166 (944)
T PRK14949 87 FVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTV 166 (944)
T ss_pred CceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCCchhchHHH
Confidence 000000 11222222 222 367779999999854 5577877777655566776665554 4444332
Q ss_pred cc-cceEecCCCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHhCCCchH
Q 047161 251 RV-DGVYKVEKLDDDEALELFNKRAFDGQPSKDYVELIKRIVKYADGLPFA 300 (720)
Q Consensus 251 ~~-~~~~~l~~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~i~~~c~glPLa 300 (720)
-. -..|++++|+.++..+.+.+.+-..... --.+....|++.++|.|--
T Consensus 167 lSRCq~f~fkpLs~eEI~~~L~~il~~EgI~-~edeAL~lIA~~S~Gd~R~ 216 (944)
T PRK14949 167 LSRCLQFNLKSLTQDEIGTQLNHILTQEQLP-FEAEALTLLAKAANGSMRD 216 (944)
T ss_pred HHhheEEeCCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHH
Confidence 21 2489999999999998887654322111 1124456788889997743
No 129
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=90.47 E-value=6.9 Score=39.51 Aligned_cols=67 Identities=10% Similarity=0.079 Sum_probs=41.3
Q ss_pred CeEEEEecCCc----------HHHHHHHhccCCCCCCCCeEEEEcCChhh----------hhhccccceEecCCCCHHHH
Q 047161 207 NVLVVIDDAVH----------IRQLNRLAGKHSWFGSGSRIIIPTRDEHL----------LRTLRVDGVYKVEKLDDDEA 266 (720)
Q Consensus 207 r~LlVLDdv~~----------~~~~~~l~~~~~~~~~gsrIivTTR~~~v----------~~~~~~~~~~~l~~L~~~~s 266 (720)
.-+|++|++.. .+..+.+..........-.+|+++..... ... ....++++.++.+|-
T Consensus 106 ~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~~~~~~~~~~~~p~L~sR--f~~~i~f~~~~~~el 183 (261)
T TIGR02881 106 GGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGYSDEMDYFLSLNPGLRSR--FPISIDFPDYTVEEL 183 (261)
T ss_pred CCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecCCcchhHHHHhcChHHHhc--cceEEEECCCCHHHH
Confidence 35888999975 23455565555433333355566543322 122 234678899999999
Q ss_pred HHHHHHHhc
Q 047161 267 LELFNKRAF 275 (720)
Q Consensus 267 ~~Lf~~~af 275 (720)
.+++.+.+-
T Consensus 184 ~~Il~~~~~ 192 (261)
T TIGR02881 184 MEIAERMVK 192 (261)
T ss_pred HHHHHHHHH
Confidence 999887664
No 130
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=90.26 E-value=5.7 Score=42.77 Aligned_cols=162 Identities=15% Similarity=0.166 Sum_probs=87.9
Q ss_pred CCCCccccchhHHHHHHhhhc-----------cCCCeEEEEEecCCCccccchhcHHHHHHHHHHhhhhcccceec----
Q 047161 126 ILDDLVEMNSRLKKLRLLLDA-----------ESRDVRMIGICGMGGVELSEKDGLIALQKQLLSKTLMEIDIEIR---- 190 (720)
Q Consensus 126 ~~~~~vG~~~~~~~i~~~L~~-----------~~~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~~~~~~~---- 190 (720)
...++.|.+..+++|.+.+.. +-...+-|-++|..|.+ ...+.+.+... .........
T Consensus 143 ~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTG------KT~LAkalA~~-l~~~fi~i~~s~l 215 (398)
T PTZ00454 143 TYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTG------KTMLAKAVAHH-TTATFIRVVGSEF 215 (398)
T ss_pred CHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCC------HHHHHHHHHHh-cCCCEEEEehHHH
Confidence 335689999999988776531 11234567899999983 33333333333 111111110
Q ss_pred ---cchhhHHHHHHH----HhcCCeEEEEecCCcHH----------------HHHHHhccCCCC--CCCCeEEEEcCChh
Q 047161 191 ---NDFDGIKMIKRE----LRRRNVLVVIDDAVHIR----------------QLNRLAGKHSWF--GSGSRIIIPTRDEH 245 (720)
Q Consensus 191 ---~~~~~~~~l~~~----l~~kr~LlVLDdv~~~~----------------~~~~l~~~~~~~--~~gsrIivTTR~~~ 245 (720)
...+....+++. ......+|++|+++... .+..+...+... ..+-.||.||...+
T Consensus 216 ~~k~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d 295 (398)
T PTZ00454 216 VQKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRAD 295 (398)
T ss_pred HHHhcchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCch
Confidence 001111222222 24577899999976420 122333333322 23556888887554
Q ss_pred hhhh-----ccccceEecCCCCHHHHHHHHHHHhcCC--CCCchHHHHHHHHHHHhCCCc
Q 047161 246 LLRT-----LRVDGVYKVEKLDDDEALELFNKRAFDG--QPSKDYVELIKRIVKYADGLP 298 (720)
Q Consensus 246 v~~~-----~~~~~~~~l~~L~~~~s~~Lf~~~af~~--~~~~~~~~~~~~i~~~c~glP 298 (720)
.... -..+..+++...+.++..++|..+.-+. ....++. ++++...|+-
T Consensus 296 ~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd~~----~la~~t~g~s 351 (398)
T PTZ00454 296 TLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVDLE----DFVSRPEKIS 351 (398)
T ss_pred hCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccCHH----HHHHHcCCCC
Confidence 4322 2456788999999999888888665433 2233444 3445555543
No 131
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=90.23 E-value=3.8 Score=44.21 Aligned_cols=111 Identities=19% Similarity=0.176 Sum_probs=71.3
Q ss_pred EEEEecCCCccccchhcHHHHHHHHHHhhhhc----cccee-ccchhhHHHHHHHHh---cCCeEEEEecCCcHHHHHHH
Q 047161 153 MIGICGMGGVELSEKDGLIALQKQLLSKTLME----IDIEI-RNDFDGIKMIKRELR---RRNVLVVIDDAVHIRQLNRL 224 (720)
Q Consensus 153 vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~----~~~~~-~~~~~~~~~l~~~l~---~kr~LlVLDdv~~~~~~~~l 224 (720)
++.|.|+-++ +...+.+.+....... ...+. .+..++.+.++.... .++..|+||.|.....|+..
T Consensus 39 i~~i~GpR~~------GKTtll~~l~~~~~~~~iy~~~~d~~~~~~~l~d~~~~~~~~~~~~~~yifLDEIq~v~~W~~~ 112 (398)
T COG1373 39 IILILGPRQV------GKTTLLKLLIKGLLEEIIYINFDDLRLDRIELLDLLRAYIELKEREKSYIFLDEIQNVPDWERA 112 (398)
T ss_pred EEEEECCccc------cHHHHHHHHHhhCCcceEEEEecchhcchhhHHHHHHHHHHhhccCCceEEEecccCchhHHHH
Confidence 8999999988 4444445555553222 00111 111222232333222 26689999999999999988
Q ss_pred hccCCCCCCCCeEEEEcCChhhhhhc------cccceEecCCCCHHHHHHHH
Q 047161 225 AGKHSWFGSGSRIIIPTRDEHLLRTL------RVDGVYKVEKLDDDEALELF 270 (720)
Q Consensus 225 ~~~~~~~~~gsrIivTTR~~~v~~~~------~~~~~~~l~~L~~~~s~~Lf 270 (720)
...+-+.++. +|++|+-+..+...- |-...+++-||+..|-..+-
T Consensus 113 lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~~~ 163 (398)
T COG1373 113 LKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLKLK 163 (398)
T ss_pred HHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHhhc
Confidence 8887777776 899999877664432 33457899999999987653
No 132
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=90.19 E-value=4.6 Score=43.18 Aligned_cols=151 Identities=16% Similarity=0.213 Sum_probs=84.8
Q ss_pred CCCCCccccchhHHHHHHhhhc--cCCCeEEEEEecCCCc----------------c-----ccch----hcHHHHHHHH
Q 047161 125 GILDDLVEMNSRLKKLRLLLDA--ESRDVRMIGICGMGGV----------------E-----LSEK----DGLIALQKQL 177 (720)
Q Consensus 125 ~~~~~~vG~~~~~~~i~~~L~~--~~~~~~vi~I~G~gGi----------------~-----vs~~----~~~~~~~~~i 177 (720)
..+..++||+.++..+.+++.. +.+.-+-+-|.|-.|. . |+-. .....+.+.|
T Consensus 147 ~~p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI 226 (529)
T KOG2227|consen 147 APPGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKI 226 (529)
T ss_pred CCCCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHHH
Confidence 3456799999999999998852 3344445556666665 0 1111 2344667777
Q ss_pred HHhhhhcccceeccchhhHHHHHHHHhcCC--eEEEEecCCcHHH--HHHHhccCCCC-CCCCeEEEEcCChhh--hh--
Q 047161 178 LSKTLMEIDIEIRNDFDGIKMIKRELRRRN--VLVVIDDAVHIRQ--LNRLAGKHSWF-GSGSRIIIPTRDEHL--LR-- 248 (720)
Q Consensus 178 l~~~~~~~~~~~~~~~~~~~~l~~~l~~kr--~LlVLDdv~~~~~--~~~l~~~~~~~-~~gsrIivTTR~~~v--~~-- 248 (720)
+..+........ ...+.++++.+..++.+ +++|||.++.... -+.|...|.|- -++||+|+.---..+ .+
T Consensus 227 ~~~~~q~~~s~~-~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTdR~ 305 (529)
T KOG2227|consen 227 FSSLLQDLVSPG-TGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTDRF 305 (529)
T ss_pred HHHHHHHhcCCc-hhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHHHH
Confidence 777533322221 11344556666665544 8999998875432 12233333333 357887765422111 11
Q ss_pred --hcc-----ccceEecCCCCHHHHHHHHHHHhcC
Q 047161 249 --TLR-----VDGVYKVEKLDDDEALELFNKRAFD 276 (720)
Q Consensus 249 --~~~-----~~~~~~l~~L~~~~s~~Lf~~~af~ 276 (720)
... .......++-+.++-.+++..+.-.
T Consensus 306 LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~ 340 (529)
T KOG2227|consen 306 LPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSE 340 (529)
T ss_pred hhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhc
Confidence 111 1235666777888888888877643
No 133
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.07 E-value=14 Score=39.98 Aligned_cols=166 Identities=11% Similarity=0.097 Sum_probs=94.0
Q ss_pred CCCccccchhHHHHHHhhhccCCCeE-EEEEecCCCccccchhcHHHHHHHHHHhhhhcc--------------------
Q 047161 127 LDDLVEMNSRLKKLRLLLDAESRDVR-MIGICGMGGVELSEKDGLIALQKQLLSKTLMEI-------------------- 185 (720)
Q Consensus 127 ~~~~vG~~~~~~~i~~~L~~~~~~~~-vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~~-------------------- 185 (720)
.++++|-+.-++.+...+.. +.+. .+-++|..|++.+ .+...+.+.+....
T Consensus 15 ~~eiiGq~~~~~~L~~~~~~--~~~~ha~lf~Gp~G~GKt------t~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~ 86 (397)
T PRK14955 15 FADITAQEHITRTIQNSLRM--GRVGHGYIFSGLRGVGKT------TAARVFAKAVNCQRMIDDADYLQEVTEPCGECES 86 (397)
T ss_pred HhhccChHHHHHHHHHHHHh--CCcceeEEEECCCCCCHH------HHHHHHHHHhcCCCCcCcccccccCCCCCCCCHH
Confidence 36789988888888887743 3443 3678999999333 22222222221100
Q ss_pred --------cce---ecc-chhhHHHH---HHHH-----hcCCeEEEEecCCcH--HHHHHHhccCCCCCCCCeEEEEc-C
Q 047161 186 --------DIE---IRN-DFDGIKMI---KREL-----RRRNVLVVIDDAVHI--RQLNRLAGKHSWFGSGSRIIIPT-R 242 (720)
Q Consensus 186 --------~~~---~~~-~~~~~~~l---~~~l-----~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIivTT-R 242 (720)
..+ ... .....+.+ .+.+ .+++-++|+|++... ..++.+...+....+.+.+|++| +
T Consensus 87 c~~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~ 166 (397)
T PRK14955 87 CRDFDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTE 166 (397)
T ss_pred HHHHhcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCC
Confidence 000 000 11112333 3333 245568899998754 45777877776555677766655 4
Q ss_pred Chhhhhhccc-cceEecCCCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHhCCCchHH
Q 047161 243 DEHLLRTLRV-DGVYKVEKLDDDEALELFNKRAFDGQPSKDYVELIKRIVKYADGLPFAL 301 (720)
Q Consensus 243 ~~~v~~~~~~-~~~~~l~~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~i~~~c~glPLai 301 (720)
-..+...... ...+++++++.++..+.+...+-.... .--.+....+++.++|.+--+
T Consensus 167 ~~kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~-~i~~~al~~l~~~s~g~lr~a 225 (397)
T PRK14955 167 LHKIPATIASRCQRFNFKRIPLEEIQQQLQGICEAEGI-SVDADALQLIGRKAQGSMRDA 225 (397)
T ss_pred hHHhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHH
Confidence 4555433221 237889999999888777665422110 011344677888999977433
No 134
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=89.86 E-value=3.7 Score=44.65 Aligned_cols=143 Identities=15% Similarity=0.211 Sum_probs=80.7
Q ss_pred CCccccchhHHHHHHhhhc-----------cCCCeEEEEEecCCCccccchhcHHHHHHHHHHhhhhcccceecc-----
Q 047161 128 DDLVEMNSRLKKLRLLLDA-----------ESRDVRMIGICGMGGVELSEKDGLIALQKQLLSKTLMEIDIEIRN----- 191 (720)
Q Consensus 128 ~~~vG~~~~~~~i~~~L~~-----------~~~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~~~~~~~~----- 191 (720)
.++.|++..+++|.+.+.. +-...+-|.++|..|.+ ...+.+.+...+ .........
T Consensus 183 ~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTG------KT~LAraIA~el-~~~fi~V~~seL~~ 255 (438)
T PTZ00361 183 ADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTG------KTLLAKAVANET-SATFLRVVGSELIQ 255 (438)
T ss_pred HHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCC------HHHHHHHHHHhh-CCCEEEEecchhhh
Confidence 5688999999998776631 11233457799999983 333344443331 111111100
Q ss_pred --chhhHHHHHHHH----hcCCeEEEEecCCcHH----------------HHHHHhccCCCC--CCCCeEEEEcCChhhh
Q 047161 192 --DFDGIKMIKREL----RRRNVLVVIDDAVHIR----------------QLNRLAGKHSWF--GSGSRIIIPTRDEHLL 247 (720)
Q Consensus 192 --~~~~~~~l~~~l----~~kr~LlVLDdv~~~~----------------~~~~l~~~~~~~--~~gsrIivTTR~~~v~ 247 (720)
..+....++..+ .+...+|++|+++... .+-.+...+..+ ..+-+||+||...+..
T Consensus 256 k~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d~L 335 (438)
T PTZ00361 256 KYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRIESL 335 (438)
T ss_pred hhcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCChHHh
Confidence 001122233222 3577889999976321 012222222221 2356788888765544
Q ss_pred hh-----ccccceEecCCCCHHHHHHHHHHHhcCC
Q 047161 248 RT-----LRVDGVYKVEKLDDDEALELFNKRAFDG 277 (720)
Q Consensus 248 ~~-----~~~~~~~~l~~L~~~~s~~Lf~~~af~~ 277 (720)
.. -..+..+++...+.++..++|..++-+.
T Consensus 336 DpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~ 370 (438)
T PTZ00361 336 DPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKM 370 (438)
T ss_pred hHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcC
Confidence 33 1346789999999999999999877544
No 135
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=89.79 E-value=0.21 Score=26.86 Aligned_cols=11 Identities=45% Similarity=0.625 Sum_probs=4.2
Q ss_pred CCCEEeccCCC
Q 047161 521 SLRTVNLSRCS 531 (720)
Q Consensus 521 ~L~~L~L~~~~ 531 (720)
+|++|++++|.
T Consensus 2 ~L~~L~l~~n~ 12 (17)
T PF13504_consen 2 NLRTLDLSNNR 12 (17)
T ss_dssp T-SEEEETSS-
T ss_pred ccCEEECCCCC
Confidence 34444444443
No 136
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=89.54 E-value=14 Score=41.63 Aligned_cols=171 Identities=17% Similarity=0.149 Sum_probs=93.1
Q ss_pred CCCccccchhHHHHHHhhhccCCCeEEEEEecCCCccccchhcHHHHHHHHHHhhhhcc--------------------c
Q 047161 127 LDDLVEMNSRLKKLRLLLDAESRDVRMIGICGMGGVELSEKDGLIALQKQLLSKTLMEI--------------------D 186 (720)
Q Consensus 127 ~~~~vG~~~~~~~i~~~L~~~~~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~~--------------------~ 186 (720)
..++||.+..++.+.+.+..+ .-...+-++|+.|++.+ .+...+...+.... .
T Consensus 15 F~dIIGQe~iv~~L~~aI~~~-rl~hA~Lf~GP~GvGKT------TlA~~lAk~L~C~~~~~~~~Cg~C~sCr~i~~~~h 87 (605)
T PRK05896 15 FKQIIGQELIKKILVNAILNN-KLTHAYIFSGPRGIGKT------SIAKIFAKAINCLNPKDGDCCNSCSVCESINTNQS 87 (605)
T ss_pred HHHhcCcHHHHHHHHHHHHcC-CCCceEEEECCCCCCHH------HHHHHHHHHhcCCCCCCCCCCcccHHHHHHHcCCC
Confidence 467899999998888877432 22345678999999322 22222222211100 0
Q ss_pred ce---ecc-chhhHHHHHHHH--------hcCCeEEEEecCCc--HHHHHHHhccCCCCCCCCeEEEEc-CChhhhhhcc
Q 047161 187 IE---IRN-DFDGIKMIKREL--------RRRNVLVVIDDAVH--IRQLNRLAGKHSWFGSGSRIIIPT-RDEHLLRTLR 251 (720)
Q Consensus 187 ~~---~~~-~~~~~~~l~~~l--------~~kr~LlVLDdv~~--~~~~~~l~~~~~~~~~gsrIivTT-R~~~v~~~~~ 251 (720)
.+ ... .....+.+++.. .+++=++|+|+++. ...++.|...+........+|++| .-..+.....
T Consensus 88 ~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl~TI~ 167 (605)
T PRK05896 88 VDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIPLTII 167 (605)
T ss_pred CceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhhHHHH
Confidence 00 100 012223333222 23444699999875 345777777665444566666555 4444433221
Q ss_pred -ccceEecCCCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHhCCCch-HHHHhh
Q 047161 252 -VDGVYKVEKLDDDEALELFNKRAFDGQPSKDYVELIKRIVKYADGLPF-ALETLG 305 (720)
Q Consensus 252 -~~~~~~l~~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~i~~~c~glPL-ai~~~g 305 (720)
-...+++.+++.++....+...+-.....-+ .+....+++.++|-+- |+..+-
T Consensus 168 SRcq~ieF~~Ls~~eL~~~L~~il~kegi~Is-~eal~~La~lS~GdlR~AlnlLe 222 (605)
T PRK05896 168 SRCQRYNFKKLNNSELQELLKSIAKKEKIKIE-DNAIDKIADLADGSLRDGLSILD 222 (605)
T ss_pred hhhhhcccCCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHcCCcHHHHHHHHH
Confidence 1247899999999988877775533211111 2345678888888654 444433
No 137
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=89.54 E-value=10 Score=40.38 Aligned_cols=175 Identities=18% Similarity=0.250 Sum_probs=99.5
Q ss_pred CCCCccccchhHHHHHHhhhc--cCCCeEEEEEecCCCccc-------------------------cchhcHHHHHHHHH
Q 047161 126 ILDDLVEMNSRLKKLRLLLDA--ESRDVRMIGICGMGGVEL-------------------------SEKDGLIALQKQLL 178 (720)
Q Consensus 126 ~~~~~vG~~~~~~~i~~~L~~--~~~~~~vi~I~G~gGi~v-------------------------s~~~~~~~~~~~il 178 (720)
.++.+.+||++++++...|.. ......-+-|+|..|.+. -...+..++..+|+
T Consensus 15 iP~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~ 94 (366)
T COG1474 15 IPEELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKIL 94 (366)
T ss_pred CcccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHH
Confidence 445599999999999887752 111112277889998811 01234456666777
Q ss_pred HhhhhcccceeccchhhHHHHHHHHh--cCCeEEEEecCCcHHH-----HHHHhccCCCCCCCCeE--EEEcCChhhhhh
Q 047161 179 SKTLMEIDIEIRNDFDGIKMIKRELR--RRNVLVVIDDAVHIRQ-----LNRLAGKHSWFGSGSRI--IIPTRDEHLLRT 249 (720)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~l~~~l~--~kr~LlVLDdv~~~~~-----~~~l~~~~~~~~~gsrI--ivTTR~~~v~~~ 249 (720)
+++. ..........+..+.+.+.+. ++.+++|||+++.... +-.|......+ .++| |.++-+..+...
T Consensus 95 ~~~~-~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~--~~~v~vi~i~n~~~~~~~ 171 (366)
T COG1474 95 NKLG-KVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGEN--KVKVSIIAVSNDDKFLDY 171 (366)
T ss_pred HHcC-CCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhcccc--ceeEEEEEEeccHHHHHH
Confidence 7632 222223444556667777774 5889999999986432 33333333322 4554 444444444333
Q ss_pred c--------cccceEecCCCCHHHHHHHHHHHh---cCC-CCCchHHHHHHHHHHHhCC-CchHHHHh
Q 047161 250 L--------RVDGVYKVEKLDDDEALELFNKRA---FDG-QPSKDYVELIKRIVKYADG-LPFALETL 304 (720)
Q Consensus 250 ~--------~~~~~~~l~~L~~~~s~~Lf~~~a---f~~-~~~~~~~~~~~~i~~~c~g-lPLai~~~ 304 (720)
+ +.. .+..++=+.+|-.......+ |.. ....+..+++..++..-+| .-.|+..+
T Consensus 172 ld~rv~s~l~~~-~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidil 238 (366)
T COG1474 172 LDPRVKSSLGPS-EIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDIL 238 (366)
T ss_pred hhhhhhhccCcc-eeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHH
Confidence 2 222 25677777888777777765 444 4455555555555555554 44455443
No 138
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=89.26 E-value=21 Score=40.94 Aligned_cols=170 Identities=16% Similarity=0.141 Sum_probs=92.4
Q ss_pred CCCccccchhHHHHHHhhhccCCCe-EEEEEecCCCccccchhcHHHHHHHHHHh----------------hhhcccce-
Q 047161 127 LDDLVEMNSRLKKLRLLLDAESRDV-RMIGICGMGGVELSEKDGLIALQKQLLSK----------------TLMEIDIE- 188 (720)
Q Consensus 127 ~~~~vG~~~~~~~i~~~L~~~~~~~-~vi~I~G~gGi~vs~~~~~~~~~~~il~~----------------~~~~~~~~- 188 (720)
.+++||-+..++.+.+.+.. +.+ ..+-++|..|++.+.-.. .+.+.+... +..+...+
T Consensus 15 f~divGQe~vv~~L~~~l~~--~rl~hAyLf~Gp~GvGKTTlAr--~lAk~L~c~~~~~~~pCg~C~~C~~i~~g~~~D~ 90 (647)
T PRK07994 15 FAEVVGQEHVLTALANALDL--GRLHHAYLFSGTRGVGKTTIAR--LLAKGLNCETGITATPCGECDNCREIEQGRFVDL 90 (647)
T ss_pred HHHhcCcHHHHHHHHHHHHc--CCCCeEEEEECCCCCCHHHHHH--HHHHhhhhccCCCCCCCCCCHHHHHHHcCCCCCc
Confidence 36799988888888887743 233 335689999983332111 111111110 00000000
Q ss_pred --eccc-hhhHHHHH---HHH-----hcCCeEEEEecCCcH--HHHHHHhccCCCCCCCCeEEEEcCC-hhhhhhccc-c
Q 047161 189 --IRND-FDGIKMIK---REL-----RRRNVLVVIDDAVHI--RQLNRLAGKHSWFGSGSRIIIPTRD-EHLLRTLRV-D 253 (720)
Q Consensus 189 --~~~~-~~~~~~l~---~~l-----~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIivTTR~-~~v~~~~~~-~ 253 (720)
.... ....+.++ +.+ .+++-++|+|+|... ...+.|...+.......++|.+|.+ ..+...... .
T Consensus 91 ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl~TI~SRC 170 (647)
T PRK07994 91 IEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRC 170 (647)
T ss_pred eeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccchHHHhhh
Confidence 1000 11222222 222 356678999999854 4577777666654456666655554 444433221 2
Q ss_pred ceEecCCCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHhCCCchHH
Q 047161 254 GVYKVEKLDDDEALELFNKRAFDGQPSKDYVELIKRIVKYADGLPFAL 301 (720)
Q Consensus 254 ~~~~l~~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~i~~~c~glPLai 301 (720)
..|++++++.++..+.+.+.+-......+ .+....|++.++|.+-.+
T Consensus 171 ~~~~f~~Ls~~ei~~~L~~il~~e~i~~e-~~aL~~Ia~~s~Gs~R~A 217 (647)
T PRK07994 171 LQFHLKALDVEQIRQQLEHILQAEQIPFE-PRALQLLARAADGSMRDA 217 (647)
T ss_pred eEeeCCCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHcCCCHHHH
Confidence 48999999999999888765422211111 233467888899977533
No 139
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=89.22 E-value=0.046 Score=60.86 Aligned_cols=112 Identities=23% Similarity=0.366 Sum_probs=65.6
Q ss_pred CCCCCceeeecCCCCCCCCCCCCcccCccchhhhHHHHhccCCCCcEEeccCC-CCCcccC----CCCCCCCCCCEEecc
Q 047161 454 TGAPNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDC-KILVRLP----STINGWKSLRTVNLS 528 (720)
Q Consensus 454 ~~l~~L~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n-~~~~~lp----~~i~~l~~L~~L~L~ 528 (720)
..+++|+.|.+.+|..+ .... +-......++|+.|++++| ......+ .....+.+|+.|+++
T Consensus 185 ~~~~~L~~l~l~~~~~~------~~~~-------~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~ 251 (482)
T KOG1947|consen 185 SSCPLLKRLSLSGCSKI------TDDS-------LDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLS 251 (482)
T ss_pred hhCchhhHhhhcccccC------Chhh-------HHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchh
Confidence 45688888888887644 2111 1222667889999999873 2222222 223456888899998
Q ss_pred CCCCCcccC-cCc-CCCCCCCEEeccCcc-ccc-CCccccCCcCCceEEEeecC
Q 047161 529 RCSKLENMP-ESL-GQMESLEELDVSGTV-IRQ-PVPSIFFPSRILKVYLFVDT 578 (720)
Q Consensus 529 ~~~~l~~lp-~~~-~~L~~L~~L~L~~n~-l~~-~~~~~~~~~~~L~~L~l~~~ 578 (720)
+|...+..- ..+ ..+++|++|.+.+|. ++. -...+...+++|+.|++..+
T Consensus 252 ~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c 305 (482)
T KOG1947|consen 252 GCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGC 305 (482)
T ss_pred hhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecC
Confidence 886432211 112 237788888877776 332 12223344577888888544
No 140
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=89.07 E-value=1.6 Score=38.49 Aligned_cols=72 Identities=19% Similarity=0.178 Sum_probs=44.7
Q ss_pred cHHHHHHHHHHhhhhcccceeccchhhHHHHHHHHhcCCe-EEEEecCCcH---HHHHHHhccCCCCCCCCeEEEEcCC
Q 047161 169 GLIALQKQLLSKTLMEIDIEIRNDFDGIKMIKRELRRRNV-LVVIDDAVHI---RQLNRLAGKHSWFGSGSRIIIPTRD 243 (720)
Q Consensus 169 ~~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~-LlVLDdv~~~---~~~~~l~~~~~~~~~gsrIivTTR~ 243 (720)
+...+.+.++..+ ........+..+..+.+.+.+...+. +||+||+... +.++.+..... ..+-+||++.+.
T Consensus 50 ~~~~~~~~i~~~l-~~~~~~~~~~~~l~~~~~~~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 50 TPRDFAQEILEAL-GLPLKSRQTSDELRSLLIDALDRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp SHHHHHHHHHHHH-T-SSSSTS-HHHHHHHHHHHHHHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred CHHHHHHHHHHHh-CccccccCCHHHHHHHHHHHHHhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 4566777777773 32222223455666778888876655 9999999876 23566655444 566677776654
No 141
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=89.05 E-value=15 Score=40.57 Aligned_cols=179 Identities=16% Similarity=0.167 Sum_probs=92.7
Q ss_pred eEEEEEecCCCccccchhcHHHHHHHHHHhhhhcc-ccee--ccchhhH------------HHHHHHHhcCCeEEEEecC
Q 047161 151 VRMIGICGMGGVELSEKDGLIALQKQLLSKTLMEI-DIEI--RNDFDGI------------KMIKRELRRRNVLVVIDDA 215 (720)
Q Consensus 151 ~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~~-~~~~--~~~~~~~------------~~l~~~l~~kr~LlVLDdv 215 (720)
..-+-|+|..|. |..++.+.+...+.... .... .+..+.. ..+++.++ +--+||+|||
T Consensus 148 ~~~l~l~G~~G~------GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~-~~dlLiiDDi 220 (450)
T PRK00149 148 YNPLFIYGGVGL------GKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDFVNALRNNTMEEFKEKYR-SVDVLLIDDI 220 (450)
T ss_pred CCeEEEECCCCC------CHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHcCcHHHHHHHHh-cCCEEEEehh
Confidence 455789999998 44455555555532211 1111 1111111 22333444 2448899999
Q ss_pred CcH---H-HHHHHhccCCC-CCCCCeEEEEcCCh---------hhhhhccccceEecCCCCHHHHHHHHHHHhcCC--CC
Q 047161 216 VHI---R-QLNRLAGKHSW-FGSGSRIIIPTRDE---------HLLRTLRVDGVYKVEKLDDDEALELFNKRAFDG--QP 279 (720)
Q Consensus 216 ~~~---~-~~~~l~~~~~~-~~~gsrIivTTR~~---------~v~~~~~~~~~~~l~~L~~~~s~~Lf~~~af~~--~~ 279 (720)
... + .-+.+...+.. ...|..||+||... .+...+....++++++.+.++-.+++.+++-.. ..
T Consensus 221 ~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~~~~~~~~~l 300 (450)
T PRK00149 221 QFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILKKKAEEEGIDL 300 (450)
T ss_pred hhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence 642 1 11222222211 12355688887642 122333334578999999999999999987542 22
Q ss_pred CchHHHHHHHHHHHhCCCchH----HHHhhhh--ccC--CCHHHHHHHHhhhhc-----CCchhHHHHHHhhh
Q 047161 280 SKDYVELIKRIVKYADGLPFA----LETLGSV--LFG--RSVDGWRSTLERLNK-----HSADEILDVLEISF 339 (720)
Q Consensus 280 ~~~~~~~~~~i~~~c~glPLa----i~~~g~~--l~~--k~~~~W~~~l~~l~~-----~~~~~il~~L~lSy 339 (720)
+ .++...|++.+.|-.-. +..+... +.+ -+....++++..+.. ...+.|+++.--.|
T Consensus 301 ~---~e~l~~ia~~~~~~~R~l~~~l~~l~~~~~~~~~~it~~~~~~~l~~~~~~~~~~~~~~~i~~~v~~~~ 370 (450)
T PRK00149 301 P---DEVLEFIAKNITSNVRELEGALNRLIAYASLTGKPITLELAKEALKDLLAAQKKKITIENIQKVVAEYY 370 (450)
T ss_pred C---HHHHHHHHcCcCCCHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHc
Confidence 2 24456667777765442 2222221 122 266777777775421 23355555544333
No 142
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.92 E-value=9.4 Score=42.77 Aligned_cols=165 Identities=14% Similarity=0.103 Sum_probs=90.8
Q ss_pred CCCccccchhHHHHHHhhhccCCCeEEEEEecCCCccccchhcHHHHHHHHHHhhhhcc--------------------c
Q 047161 127 LDDLVEMNSRLKKLRLLLDAESRDVRMIGICGMGGVELSEKDGLIALQKQLLSKTLMEI--------------------D 186 (720)
Q Consensus 127 ~~~~vG~~~~~~~i~~~L~~~~~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~~--------------------~ 186 (720)
.+++||-+..++.+...+..+ .-...+-++|..|++ ...+.+.+.+.+.... .
T Consensus 15 f~diiGq~~~v~~L~~~i~~~-rl~ha~Lf~Gp~GvG------KTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~ 87 (546)
T PRK14957 15 FAEVAGQQHALNSLVHALETQ-KVHHAYLFTGTRGVG------KTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSF 87 (546)
T ss_pred HHHhcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCC------HHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCC
Confidence 367899999888888877432 223446689999993 3333333333321100 0
Q ss_pred ce---ecc-chhhHHH---HHHHH-----hcCCeEEEEecCCcH--HHHHHHhccCCCCCCCCeEEE-EcCChhhhhhcc
Q 047161 187 IE---IRN-DFDGIKM---IKREL-----RRRNVLVVIDDAVHI--RQLNRLAGKHSWFGSGSRIII-PTRDEHLLRTLR 251 (720)
Q Consensus 187 ~~---~~~-~~~~~~~---l~~~l-----~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIiv-TTR~~~v~~~~~ 251 (720)
.+ ... ...+.+. +.+.+ .+++-++|+|++... ..++.|...+.......++|+ ||.-..+.....
T Consensus 88 ~dlieidaas~~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~Ttd~~kil~tI~ 167 (546)
T PRK14957 88 IDLIEIDAASRTGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYHKIPVTIL 167 (546)
T ss_pred CceEEeecccccCHHHHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEEECChhhhhhhHH
Confidence 00 000 1111222 22222 356778999999854 457777777765555666664 544444443321
Q ss_pred -ccceEecCCCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHhCCCch
Q 047161 252 -VDGVYKVEKLDDDEALELFNKRAFDGQPSKDYVELIKRIVKYADGLPF 299 (720)
Q Consensus 252 -~~~~~~l~~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~i~~~c~glPL 299 (720)
--..+++++++.++-.+.+.+.+-...... -.+....+++.++|-+-
T Consensus 168 SRc~~~~f~~Ls~~eI~~~L~~il~~egi~~-e~~Al~~Ia~~s~GdlR 215 (546)
T PRK14957 168 SRCIQLHLKHISQADIKDQLKIILAKENINS-DEQSLEYIAYHAKGSLR 215 (546)
T ss_pred HheeeEEeCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHH
Confidence 124889999999998777665432211111 12334567788888553
No 143
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.68 E-value=10 Score=41.60 Aligned_cols=164 Identities=17% Similarity=0.132 Sum_probs=92.1
Q ss_pred CCCccccchhHHHHHHhhhccCCCeE-EEEEecCCCccccchhcHHHHHHHHHHhhhhc--------------------c
Q 047161 127 LDDLVEMNSRLKKLRLLLDAESRDVR-MIGICGMGGVELSEKDGLIALQKQLLSKTLME--------------------I 185 (720)
Q Consensus 127 ~~~~vG~~~~~~~i~~~L~~~~~~~~-vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~--------------------~ 185 (720)
.+++||-+..+..+...+.. +.+. .+-++|..|++.+ .+.+.+.+.+... .
T Consensus 17 f~dvVGQe~iv~~L~~~i~~--~ri~ha~Lf~GP~GtGKT------TlAriLAk~Lnce~~~~~~pCg~C~sC~~i~~g~ 88 (484)
T PRK14956 17 FRDVIHQDLAIGALQNALKS--GKIGHAYIFFGPRGVGKT------TIARILAKRLNCENPIGNEPCNECTSCLEITKGI 88 (484)
T ss_pred HHHHhChHHHHHHHHHHHHc--CCCCeEEEEECCCCCCHH------HHHHHHHHhcCcccccCccccCCCcHHHHHHccC
Confidence 36789988888888887743 3333 4678999998322 2222222221110 0
Q ss_pred c---ceecc-chhhHHHHH---HHH-----hcCCeEEEEecCCcH--HHHHHHhccCCCCCCCCeEE-EEcCChhhhhhc
Q 047161 186 D---IEIRN-DFDGIKMIK---REL-----RRRNVLVVIDDAVHI--RQLNRLAGKHSWFGSGSRII-IPTRDEHLLRTL 250 (720)
Q Consensus 186 ~---~~~~~-~~~~~~~l~---~~l-----~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIi-vTTR~~~v~~~~ 250 (720)
. ..... ...+.+.++ +.+ .++.-++|+|+|... +.++.|...+........+| .||....+....
T Consensus 89 ~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI 168 (484)
T PRK14956 89 SSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETI 168 (484)
T ss_pred CccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHH
Confidence 0 00100 111222222 222 356668999999854 55888877775443455545 455445554333
Q ss_pred cc-cceEecCCCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHhCCCch
Q 047161 251 RV-DGVYKVEKLDDDEALELFNKRAFDGQPSKDYVELIKRIVKYADGLPF 299 (720)
Q Consensus 251 ~~-~~~~~l~~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~i~~~c~glPL 299 (720)
.. -..|.+.+++.++-.+.+.+.+-.....- -.+....|++.++|.+-
T Consensus 169 ~SRCq~~~f~~ls~~~i~~~L~~i~~~Egi~~-e~eAL~~Ia~~S~Gd~R 217 (484)
T PRK14956 169 LSRCQDFIFKKVPLSVLQDYSEKLCKIENVQY-DQEGLFWIAKKGDGSVR 217 (484)
T ss_pred HhhhheeeecCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCChHH
Confidence 22 23799999999988887777653321111 13345778889999873
No 144
>COG3899 Predicted ATPase [General function prediction only]
Probab=88.58 E-value=5.5 Score=47.44 Aligned_cols=105 Identities=14% Similarity=0.151 Sum_probs=62.6
Q ss_pred hcCCeEEEEecCCcHHH-----HHHHhccCCCCC-CCCeE--EEEcCCh-hhhhhc-cccceEecCCCCHHHHHHHHHHH
Q 047161 204 RRRNVLVVIDDAVHIRQ-----LNRLAGKHSWFG-SGSRI--IIPTRDE-HLLRTL-RVDGVYKVEKLDDDEALELFNKR 273 (720)
Q Consensus 204 ~~kr~LlVLDdv~~~~~-----~~~l~~~~~~~~-~gsrI--ivTTR~~-~v~~~~-~~~~~~~l~~L~~~~s~~Lf~~~ 273 (720)
+.|+..+|+||+.-.+. ++.+.....-+. .-..| +.|.+.. ...... .....+.+.+|+..+.-.+....
T Consensus 152 ~~~plVi~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~ 231 (849)
T COG3899 152 EEHPLVIVLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAAT 231 (849)
T ss_pred ccCCeEEEEecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHH
Confidence 35799999999942222 344443332000 01122 2223322 111111 22368999999999999998776
Q ss_pred hcCCCCCchHHHHHHHHHHHhCCCchHHHHhhhhccC
Q 047161 274 AFDGQPSKDYVELIKRIVKYADGLPFALETLGSVLFG 310 (720)
Q Consensus 274 af~~~~~~~~~~~~~~i~~~c~glPLai~~~g~~l~~ 310 (720)
.... .....+..+.|+++.+|.|+-+.-+-..+..
T Consensus 232 l~~~--~~~~~p~~~~i~~kt~GnPfFi~e~lk~l~~ 266 (849)
T COG3899 232 LGCT--KLLPAPLLELIFEKTKGNPFFIEEFLKALYE 266 (849)
T ss_pred hCCc--ccccchHHHHHHHHhcCCCccHHHHHHHHHh
Confidence 5442 1223456788999999999988877666654
No 145
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=88.15 E-value=0.39 Score=28.99 Aligned_cols=22 Identities=32% Similarity=0.549 Sum_probs=15.7
Q ss_pred CCCCCEEeccCcccccCCcccc
Q 047161 543 MESLEELDVSGTVIRQPVPSIF 564 (720)
Q Consensus 543 L~~L~~L~L~~n~l~~~~~~~~ 564 (720)
|++|++|+|++|.+..+|+..+
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHHc
Confidence 4567777787777777776655
No 146
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=88.15 E-value=0.39 Score=28.99 Aligned_cols=22 Identities=32% Similarity=0.549 Sum_probs=15.7
Q ss_pred CCCCCEEeccCcccccCCcccc
Q 047161 543 MESLEELDVSGTVIRQPVPSIF 564 (720)
Q Consensus 543 L~~L~~L~L~~n~l~~~~~~~~ 564 (720)
|++|++|+|++|.+..+|+..+
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHHc
Confidence 4567777787777777776655
No 147
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=87.88 E-value=28 Score=35.67 Aligned_cols=69 Identities=13% Similarity=0.071 Sum_probs=44.3
Q ss_pred CCeEEEEecCCc-----------HHHHHHHhccCCCCCCCCeEEEEcCChhhhhhc--------cccceEecCCCCHHHH
Q 047161 206 RNVLVVIDDAVH-----------IRQLNRLAGKHSWFGSGSRIIIPTRDEHLLRTL--------RVDGVYKVEKLDDDEA 266 (720)
Q Consensus 206 kr~LlVLDdv~~-----------~~~~~~l~~~~~~~~~gsrIivTTR~~~v~~~~--------~~~~~~~l~~L~~~~s 266 (720)
..-+|++|++.. .+.++.|...+.....+-+||++|.....-... .....+++++++.+|-
T Consensus 121 ~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl 200 (284)
T TIGR02880 121 MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAEL 200 (284)
T ss_pred cCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHH
Confidence 346888999963 223555666555444566777777543322111 1245789999999999
Q ss_pred HHHHHHHh
Q 047161 267 LELFNKRA 274 (720)
Q Consensus 267 ~~Lf~~~a 274 (720)
.+++.+.+
T Consensus 201 ~~I~~~~l 208 (284)
T TIGR02880 201 LVIAGLML 208 (284)
T ss_pred HHHHHHHH
Confidence 99988765
No 148
>PRK06620 hypothetical protein; Validated
Probab=87.65 E-value=7.3 Score=38.00 Aligned_cols=108 Identities=16% Similarity=0.079 Sum_probs=58.7
Q ss_pred EEEEEecCCCccccchhcHHHHHHHHHHhhhhcccceeccchhhHHHHHHHHhcCCeEEEEecCCcHHH--HHHHhccCC
Q 047161 152 RMIGICGMGGVELSEKDGLIALQKQLLSKTLMEIDIEIRNDFDGIKMIKRELRRRNVLVVIDDAVHIRQ--LNRLAGKHS 229 (720)
Q Consensus 152 ~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVLDdv~~~~~--~~~l~~~~~ 229 (720)
+.+-|||..|++.| ++.+-+... ... ..... .....+.. +..-++++|||....+ +-.+...+.
T Consensus 45 ~~l~l~Gp~G~GKT------hLl~a~~~~-~~~---~~~~~---~~~~~~~~-~~~d~lliDdi~~~~~~~lf~l~N~~~ 110 (214)
T PRK06620 45 FTLLIKGPSSSGKT------YLTKIWQNL-SNA---YIIKD---IFFNEEIL-EKYNAFIIEDIENWQEPALLHIFNIIN 110 (214)
T ss_pred ceEEEECCCCCCHH------HHHHHHHhc-cCC---EEcch---hhhchhHH-hcCCEEEEeccccchHHHHHHHHHHHH
Confidence 56889999999544 333333222 111 11110 00011222 2345788899974322 222222221
Q ss_pred CCCCCCeEEEEcCCh-------hhhhhccccceEecCCCCHHHHHHHHHHHhc
Q 047161 230 WFGSGSRIIIPTRDE-------HLLRTLRVDGVYKVEKLDDDEALELFNKRAF 275 (720)
Q Consensus 230 ~~~~gsrIivTTR~~-------~v~~~~~~~~~~~l~~L~~~~s~~Lf~~~af 275 (720)
..|..||+|++.. ++...+...-++++++++.++-..+..+.+-
T Consensus 111 --e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~ 161 (214)
T PRK06620 111 --EKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFS 161 (214)
T ss_pred --hcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHH
Confidence 3577899998733 2233334445899999999998888777653
No 149
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=87.46 E-value=22 Score=39.13 Aligned_cols=164 Identities=13% Similarity=0.164 Sum_probs=89.7
Q ss_pred CCCccccchhHHHHHHhhhccCCCe-EEEEEecCCCccccchhcHHHHHHHHHHhhhhc---------------------
Q 047161 127 LDDLVEMNSRLKKLRLLLDAESRDV-RMIGICGMGGVELSEKDGLIALQKQLLSKTLME--------------------- 184 (720)
Q Consensus 127 ~~~~vG~~~~~~~i~~~L~~~~~~~-~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~--------------------- 184 (720)
.++++|-+..++.+.+.+.. +.+ ..+-++|..|++.+ .+.+.+...+...
T Consensus 16 ~~diiGq~~~v~~L~~~i~~--~~i~ha~Lf~Gp~G~GKt------t~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~ 87 (451)
T PRK06305 16 FSEILGQDAVVAVLKNALRF--NRAAHAYLFSGIRGTGKT------TLARIFAKALNCQNPTEDQEPCNQCASCKEISSG 87 (451)
T ss_pred HHHhcCcHHHHHHHHHHHHc--CCCceEEEEEcCCCCCHH------HHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcC
Confidence 36799999888888888743 333 44668999998332 2222222222110
Q ss_pred ccce---ecc-chhhHHHH---HHHH-----hcCCeEEEEecCCcH--HHHHHHhccCCCCCCCCeEEEEcC-Chhhhhh
Q 047161 185 IDIE---IRN-DFDGIKMI---KREL-----RRRNVLVVIDDAVHI--RQLNRLAGKHSWFGSGSRIIIPTR-DEHLLRT 249 (720)
Q Consensus 185 ~~~~---~~~-~~~~~~~l---~~~l-----~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIivTTR-~~~v~~~ 249 (720)
...+ ... ...+.+.+ .+.+ .+++-++|+|+++.. ...+.|...+.....+..+|++|. ...+...
T Consensus 88 ~~~d~~~i~g~~~~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~Il~t~~~~kl~~t 167 (451)
T PRK06305 88 TSLDVLEIDGASHRGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLATTEIHKIPGT 167 (451)
T ss_pred CCCceEEeeccccCCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEEEEeCChHhcchH
Confidence 0000 110 11112222 2223 256678899998754 345666666654445666666653 3444333
Q ss_pred cc-ccceEecCCCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHhCCCch
Q 047161 250 LR-VDGVYKVEKLDDDEALELFNKRAFDGQPSKDYVELIKRIVKYADGLPF 299 (720)
Q Consensus 250 ~~-~~~~~~l~~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~i~~~c~glPL 299 (720)
.. -...++++.++.++..+.+.+.+-+.... --.+....+++.++|-+-
T Consensus 168 I~sRc~~v~f~~l~~~el~~~L~~~~~~eg~~-i~~~al~~L~~~s~gdlr 217 (451)
T PRK06305 168 ILSRCQKMHLKRIPEETIIDKLALIAKQEGIE-TSREALLPIARAAQGSLR 217 (451)
T ss_pred HHHhceEEeCCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHH
Confidence 21 12478999999999888777654322110 112345677888888553
No 150
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=87.42 E-value=19 Score=40.83 Aligned_cols=103 Identities=17% Similarity=0.143 Sum_probs=64.3
Q ss_pred cCCeEEEEecCCcH--HHHHHHhccCCCCCCCCeEEEEcCC-hhhhhhcc-ccceEecCCCCHHHHHHHHHHHhcCCCCC
Q 047161 205 RRNVLVVIDDAVHI--RQLNRLAGKHSWFGSGSRIIIPTRD-EHLLRTLR-VDGVYKVEKLDDDEALELFNKRAFDGQPS 280 (720)
Q Consensus 205 ~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIivTTR~-~~v~~~~~-~~~~~~l~~L~~~~s~~Lf~~~af~~~~~ 280 (720)
+++-++|+|++... ..++.|...+........+|++|.+ ..+..... --..++++.++.++..+.+...+......
T Consensus 118 g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi~ 197 (624)
T PRK14959 118 GRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGVD 197 (624)
T ss_pred CCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhhHHHHhhhhccccCCCCHHHHHHHHHHHHHHcCCC
Confidence 56678999999754 4467777666543445566665554 44443321 12378899999999998888766543111
Q ss_pred chHHHHHHHHHHHhCCCc-hHHHHhhhhc
Q 047161 281 KDYVELIKRIVKYADGLP-FALETLGSVL 308 (720)
Q Consensus 281 ~~~~~~~~~i~~~c~glP-Lai~~~g~~l 308 (720)
- -.+....+++.++|-+ .|+..+...+
T Consensus 198 i-d~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 198 Y-DPAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred C-CHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 1 1244567888888854 6666665443
No 151
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=87.40 E-value=0.022 Score=54.34 Aligned_cols=88 Identities=17% Similarity=0.189 Sum_probs=66.2
Q ss_pred CCCCCCCceeeecCCCCCCCCCCCCcccCccchhhhHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCC
Q 047161 452 DFTGAPNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCS 531 (720)
Q Consensus 452 ~~~~l~~L~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~ 531 (720)
++..+....+||++.|. +..+..+ +.-++.|..|+++.|. +..+|..++.+..+..+++..|
T Consensus 37 ei~~~kr~tvld~~s~r-------~vn~~~n---------~s~~t~~~rl~~sknq-~~~~~~d~~q~~e~~~~~~~~n- 98 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNR-------LVNLGKN---------FSILTRLVRLDLSKNQ-IKFLPKDAKQQRETVNAASHKN- 98 (326)
T ss_pred hhhccceeeeehhhhhH-------HHhhccc---------hHHHHHHHHHhccHhh-HhhChhhHHHHHHHHHHHhhcc-
Confidence 35667778888888877 3445555 6667778888888877 6778888888888888877665
Q ss_pred CCcccCcCcCCCCCCCEEeccCcccc
Q 047161 532 KLENMPESLGQMESLEELDVSGTVIR 557 (720)
Q Consensus 532 ~l~~lp~~~~~L~~L~~L~L~~n~l~ 557 (720)
.....|.++++++.++++++.+|.+.
T Consensus 99 ~~~~~p~s~~k~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 99 NHSQQPKSQKKEPHPKKNEQKKTEFF 124 (326)
T ss_pred chhhCCccccccCCcchhhhccCcch
Confidence 46778888888888888888877644
No 152
>PF08937 DUF1863: MTH538 TIR-like domain (DUF1863); InterPro: IPR015032 This protein adopts the flavodoxin fold, that is, five parallel beta-strands and four helical segments. The structure is a three-layer sandwich with alpha-1 and alpha-4 on one side of the beta-sheet, and alpha-2 and alpha-3 on the other side. Probable role in signal transduction as a phosphorylation-independent conformational switch protein []. This domain is similar to the TIR domain [].; PDB: 3HYN_A.
Probab=87.25 E-value=0.54 Score=41.82 Aligned_cols=46 Identities=17% Similarity=0.245 Sum_probs=31.4
Q ss_pred cCCCCCCCCcccHHHHHHHHhccceeEEeccCcccchhhhhhhccc
Q 047161 7 DHKELERGKAVSPGLFKAIEESRFSVVVFSRNYAYSTWCLDELAKI 52 (720)
Q Consensus 7 d~~~l~~g~~~~~~l~~ai~~s~~~ivv~S~~ya~s~wcl~el~~i 52 (720)
++.+....+.|...|.++|.+|.+.||+.|++-+.|+|+-.|+...
T Consensus 50 ~~~~~~~~~~ik~~I~~~i~~s~~~IVLig~~T~~s~wV~~EI~~A 95 (130)
T PF08937_consen 50 SRDDDSSSEYIKRKIRERIKNSSVTIVLIGPNTAKSKWVNWEIEYA 95 (130)
T ss_dssp TTS---TTTTHHHHHHHHHHTEEEEEEE--TT----HHHHHHHHHH
T ss_pred CccccchHHHHHHHHHHHHhcCCEEEEEeCCCcccCcHHHHHHHHH
Confidence 3334445668899999999999999999999999999999998643
No 153
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=86.92 E-value=46 Score=38.05 Aligned_cols=167 Identities=12% Similarity=0.123 Sum_probs=93.8
Q ss_pred CCCccccchhHHHHHHhhhccCCCeEEEEEecCCCccccchhcHHHHHHHHHHhhhh-----------------------
Q 047161 127 LDDLVEMNSRLKKLRLLLDAESRDVRMIGICGMGGVELSEKDGLIALQKQLLSKTLM----------------------- 183 (720)
Q Consensus 127 ~~~~vG~~~~~~~i~~~L~~~~~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~----------------------- 183 (720)
.+++||-+..++.+.+.+..+ .-...+-++|..|++.+. +.+-+.+.+..
T Consensus 15 f~dviGQe~vv~~L~~~l~~~-rl~ha~Lf~Gp~GvGKTt------lAr~lAk~LnC~~~~~~~~~~~~pCg~C~~C~~i 87 (618)
T PRK14951 15 FSEMVGQEHVVQALTNALTQQ-RLHHAYLFTGTRGVGKTT------VSRILAKSLNCQGPDGQGGITATPCGVCQACRDI 87 (618)
T ss_pred HHHhcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHH------HHHHHHHHhcCCCcccccCCCCCCCCccHHHHHH
Confidence 367899777778888877532 223456789999983332 22222222110
Q ss_pred --ccccee---c-cchhhHHHHHHHHh--------cCCeEEEEecCCcH--HHHHHHhccCCCCCCCCeEEEEc-CChhh
Q 047161 184 --EIDIEI---R-NDFDGIKMIKRELR--------RRNVLVVIDDAVHI--RQLNRLAGKHSWFGSGSRIIIPT-RDEHL 246 (720)
Q Consensus 184 --~~~~~~---~-~~~~~~~~l~~~l~--------~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIivTT-R~~~v 246 (720)
....+. + .....++.+++.+. ++.-++|+|+|+.. ..++.|...+.......++|++| ....+
T Consensus 88 ~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~ki 167 (618)
T PRK14951 88 DSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKV 167 (618)
T ss_pred HcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchhh
Confidence 000011 0 01123444444442 34557899999854 45777777776544566666555 43444
Q ss_pred hhhccc-cceEecCCCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHhCCCchHH
Q 047161 247 LRTLRV-DGVYKVEKLDDDEALELFNKRAFDGQPSKDYVELIKRIVKYADGLPFAL 301 (720)
Q Consensus 247 ~~~~~~-~~~~~l~~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~i~~~c~glPLai 301 (720)
...... -..++++.++.++..+.+.+.+-.....-+ .+....+++.++|-+--+
T Consensus 168 l~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~ie-~~AL~~La~~s~GslR~a 222 (618)
T PRK14951 168 PVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVPAE-PQALRLLARAARGSMRDA 222 (618)
T ss_pred hHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHcCCCHHHH
Confidence 433221 247899999999988888776543211111 234567788888876433
No 154
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=86.89 E-value=30 Score=39.56 Aligned_cols=92 Identities=14% Similarity=0.100 Sum_probs=57.3
Q ss_pred cCCeEEEEecCCcH--HHHHHHhccCCCCCCCCeEEEEc-CChhhhhhcc-ccceEecCCCCHHHHHHHHHHHhcCC--C
Q 047161 205 RRNVLVVIDDAVHI--RQLNRLAGKHSWFGSGSRIIIPT-RDEHLLRTLR-VDGVYKVEKLDDDEALELFNKRAFDG--Q 278 (720)
Q Consensus 205 ~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIivTT-R~~~v~~~~~-~~~~~~l~~L~~~~s~~Lf~~~af~~--~ 278 (720)
+++-++|+|+++.. ...+.|...+..-...+.+|++| +-..+..... -...+++.+++.++....+.+.+-.. .
T Consensus 126 ~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kLl~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi~ 205 (620)
T PRK14954 126 GRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKIPATIASRCQRFNFKRIPLDEIQSQLQMICRAEGIQ 205 (620)
T ss_pred CCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHHHHhhceEEecCCCCHHHHHHHHHHHHHHcCCC
Confidence 45557899998764 34677777666544566655544 4455544322 23578999999998877776644322 1
Q ss_pred CCchHHHHHHHHHHHhCCCch
Q 047161 279 PSKDYVELIKRIVKYADGLPF 299 (720)
Q Consensus 279 ~~~~~~~~~~~i~~~c~glPL 299 (720)
.. .+....+++.++|-.-
T Consensus 206 I~---~eal~~La~~s~Gdlr 223 (620)
T PRK14954 206 ID---ADALQLIARKAQGSMR 223 (620)
T ss_pred CC---HHHHHHHHHHhCCCHH
Confidence 22 2345678888888553
No 155
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=86.57 E-value=50 Score=37.69 Aligned_cols=173 Identities=14% Similarity=0.159 Sum_probs=94.0
Q ss_pred CCCCccccchhHHHHHHhhhccCCCeEEEEEecCCCccccchhcHHHHHHHHHHh---------------------hhhc
Q 047161 126 ILDDLVEMNSRLKKLRLLLDAESRDVRMIGICGMGGVELSEKDGLIALQKQLLSK---------------------TLME 184 (720)
Q Consensus 126 ~~~~~vG~~~~~~~i~~~L~~~~~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~---------------------~~~~ 184 (720)
..+++||.+..++.+.+.+..+. -..-+-++|..|++.+... ..+.+.+... +...
T Consensus 22 ~f~dliGq~~~v~~L~~~~~~gr-i~ha~L~~Gp~GvGKTt~A--r~lAk~L~c~~~~~~~~~~~~~cg~c~~C~~i~~g 98 (598)
T PRK09111 22 TFDDLIGQEAMVRTLTNAFETGR-IAQAFMLTGVRGVGKTTTA--RILARALNYEGPDGDGGPTIDLCGVGEHCQAIMEG 98 (598)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHH--HHHHHhhCcCCccccCCCccccCcccHHHHHHhcC
Confidence 34679999999999988875321 1234668999998322211 0111111110 0000
Q ss_pred cccee---c-cchhhHHHHHHH---H-----hcCCeEEEEecCCcH--HHHHHHhccCCCCCCCCeEEEEc-CChhhhhh
Q 047161 185 IDIEI---R-NDFDGIKMIKRE---L-----RRRNVLVVIDDAVHI--RQLNRLAGKHSWFGSGSRIIIPT-RDEHLLRT 249 (720)
Q Consensus 185 ~~~~~---~-~~~~~~~~l~~~---l-----~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIivTT-R~~~v~~~ 249 (720)
...+. . .....++.+++. + .+++=++|+|++... ...+.|...+....+.+.+|++| ...++...
T Consensus 99 ~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~kll~t 178 (598)
T PRK09111 99 RHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRKVPVT 178 (598)
T ss_pred CCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhhhhHH
Confidence 00100 0 011223333333 2 234557899998754 34666766665555667766544 44455433
Q ss_pred ccc-cceEecCCCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHhCCCchHHH
Q 047161 250 LRV-DGVYKVEKLDDDEALELFNKRAFDGQPSKDYVELIKRIVKYADGLPFALE 302 (720)
Q Consensus 250 ~~~-~~~~~l~~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~i~~~c~glPLai~ 302 (720)
... -..++++.++.++..+.+.+.+-.....- -.+....|++.++|-+.-+.
T Consensus 179 I~SRcq~~~f~~l~~~el~~~L~~i~~kegi~i-~~eAl~lIa~~a~Gdlr~al 231 (598)
T PRK09111 179 VLSRCQRFDLRRIEADVLAAHLSRIAAKEGVEV-EDEALALIARAAEGSVRDGL 231 (598)
T ss_pred HHhheeEEEecCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHH
Confidence 321 24789999999998888877653321111 12445678888898875443
No 156
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=86.02 E-value=31 Score=38.57 Aligned_cols=166 Identities=18% Similarity=0.208 Sum_probs=95.6
Q ss_pred CCCccccchhHHHHHHhhhccCCCeE-EEEEecCCCccccchhcHHHHHHHHHHhhhhcc--------------------
Q 047161 127 LDDLVEMNSRLKKLRLLLDAESRDVR-MIGICGMGGVELSEKDGLIALQKQLLSKTLMEI-------------------- 185 (720)
Q Consensus 127 ~~~~vG~~~~~~~i~~~L~~~~~~~~-vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~~-------------------- 185 (720)
.+++||-+..++.+...+.. +.+. ++-++|..|.+ ...+.+.+...+....
T Consensus 13 fdeiiGqe~v~~~L~~~I~~--grl~hayLf~Gp~G~G------KTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~ 84 (535)
T PRK08451 13 FDELIGQESVSKTLSLALDN--NRLAHAYLFSGLRGSG------KTSSARIFARALVCEQGPSSTPCDTCIQCQSALENR 84 (535)
T ss_pred HHHccCcHHHHHHHHHHHHc--CCCCeeEEEECCCCCc------HHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcC
Confidence 36789988888888887743 3333 45689999983 3333333333322111
Q ss_pred ccee---c-cchhhHHHHHHHHh--------cCCeEEEEecCCcH--HHHHHHhccCCCCCCCCeEEEEcCCh-hhhhhc
Q 047161 186 DIEI---R-NDFDGIKMIKRELR--------RRNVLVVIDDAVHI--RQLNRLAGKHSWFGSGSRIIIPTRDE-HLLRTL 250 (720)
Q Consensus 186 ~~~~---~-~~~~~~~~l~~~l~--------~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIivTTR~~-~v~~~~ 250 (720)
..+. . ....+.+.+++.+. +++-++|+|++... +..+.|...+....+..++|++|.+. .+....
T Consensus 85 h~dv~eldaas~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd~~kL~~tI 164 (535)
T PRK08451 85 HIDIIEMDAASNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPLKLPATI 164 (535)
T ss_pred CCeEEEeccccccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECChhhCchHH
Confidence 0111 1 01123444544442 44568899999754 44677777666555677777777653 222221
Q ss_pred cc-cceEecCCCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHhCCCchHH
Q 047161 251 RV-DGVYKVEKLDDDEALELFNKRAFDGQPSKDYVELIKRIVKYADGLPFAL 301 (720)
Q Consensus 251 ~~-~~~~~l~~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~i~~~c~glPLai 301 (720)
.. ...+++.+++.++..+...+.+-.....- -.+....+++.++|-+--+
T Consensus 165 ~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~i-~~~Al~~Ia~~s~GdlR~a 215 (535)
T PRK08451 165 LSRTQHFRFKQIPQNSIISHLKTILEKEGVSY-EPEALEILARSGNGSLRDT 215 (535)
T ss_pred HhhceeEEcCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCcHHHH
Confidence 11 24789999999998887766553321111 1244567888888877443
No 157
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=85.93 E-value=48 Score=36.72 Aligned_cols=169 Identities=17% Similarity=0.164 Sum_probs=94.4
Q ss_pred CCCccccchhHHHHHHhhhccCCCeE-EEEEecCCCccccchhcHHHHHHHHHH----------------hhhhccccee
Q 047161 127 LDDLVEMNSRLKKLRLLLDAESRDVR-MIGICGMGGVELSEKDGLIALQKQLLS----------------KTLMEIDIEI 189 (720)
Q Consensus 127 ~~~~vG~~~~~~~i~~~L~~~~~~~~-vi~I~G~gGi~vs~~~~~~~~~~~il~----------------~~~~~~~~~~ 189 (720)
.+++||-+..++.+.+.+.. +.+. -+-++|..|++.+....+ +.+.+.. .+......+.
T Consensus 12 f~dliGQe~vv~~L~~a~~~--~ri~ha~Lf~Gp~G~GKTT~Ari--lAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv 87 (491)
T PRK14964 12 FKDLVGQDVLVRILRNAFTL--NKIPQSILLVGASGVGKTTCARI--ISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDV 87 (491)
T ss_pred HHHhcCcHHHHHHHHHHHHc--CCCCceEEEECCCCccHHHHHHH--HHHHHcCcCCCCCCCccccHHHHHHhccCCCCE
Confidence 46799988888888777643 3333 567899999844332111 1111110 0000111111
Q ss_pred ---c-cchhhHHHHHHHH--------hcCCeEEEEecCCcH--HHHHHHhccCCCCCCCCeEEEEc-CChhhhhhccc-c
Q 047161 190 ---R-NDFDGIKMIKREL--------RRRNVLVVIDDAVHI--RQLNRLAGKHSWFGSGSRIIIPT-RDEHLLRTLRV-D 253 (720)
Q Consensus 190 ---~-~~~~~~~~l~~~l--------~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIivTT-R~~~v~~~~~~-~ 253 (720)
+ ......+.+++.+ .+++=++|+|+|... ...+.|...+....+..++|++| ...++...... -
T Consensus 88 ~eidaas~~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIlatte~~Kl~~tI~SRc 167 (491)
T PRK14964 88 IEIDAASNTSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATTEVKKIPVTIISRC 167 (491)
T ss_pred EEEecccCCCHHHHHHHHHHHHhccccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEEeCChHHHHHHHHHhh
Confidence 1 1122344444433 245567999999754 44677777776555677766655 44555443322 2
Q ss_pred ceEecCCCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHhCCCchH
Q 047161 254 GVYKVEKLDDDEALELFNKRAFDGQPSKDYVELIKRIVKYADGLPFA 300 (720)
Q Consensus 254 ~~~~l~~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~i~~~c~glPLa 300 (720)
..+++++++.++-.+.+.+.+-.....-+ .+....|++.++|-+-.
T Consensus 168 ~~~~f~~l~~~el~~~L~~ia~~Egi~i~-~eAL~lIa~~s~GslR~ 213 (491)
T PRK14964 168 QRFDLQKIPTDKLVEHLVDIAKKENIEHD-EESLKLIAENSSGSMRN 213 (491)
T ss_pred eeeecccccHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHcCCCHHH
Confidence 47899999999988888876654311111 23345678888887643
No 158
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=85.67 E-value=30 Score=35.21 Aligned_cols=208 Identities=20% Similarity=0.279 Sum_probs=112.5
Q ss_pred CCCCccccchhHHHHHHhhhccCCCeEEEEEecCCCccccchhcHHHHHHHHHH-hhhhccccee-ccchhhHHHHHHHH
Q 047161 126 ILDDLVEMNSRLKKLRLLLDAESRDVRMIGICGMGGVELSEKDGLIALQKQLLS-KTLMEIDIEI-RNDFDGIKMIKREL 203 (720)
Q Consensus 126 ~~~~~vG~~~~~~~i~~~L~~~~~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~-~~~~~~~~~~-~~~~~~~~~l~~~l 203 (720)
..++++|-+..+..+.+-+.. ....+.-.+|..|.+.+... .-+.+++.. ++....-.+. .+.+.++..++...
T Consensus 34 t~de~~gQe~vV~~L~~a~~~--~~lp~~LFyGPpGTGKTSta--lafar~L~~~~~~~~rvl~lnaSderGisvvr~Ki 109 (346)
T KOG0989|consen 34 TFDELAGQEHVVQVLKNALLR--RILPHYLFYGPPGTGKTSTA--LAFARALNCEQLFPCRVLELNASDERGISVVREKI 109 (346)
T ss_pred cHHhhcchHHHHHHHHHHHhh--cCCceEEeeCCCCCcHhHHH--HHHHHHhcCccccccchhhhcccccccccchhhhh
Confidence 345688888777777766643 56778889999998433221 111122211 1000000000 12223333333332
Q ss_pred h------c----------CC-eEEEEecCCcH--HHHHHHhccCCCCCCCCeEEEEcCChhh-hhhccc-cceEecCCCC
Q 047161 204 R------R----------RN-VLVVIDDAVHI--RQLNRLAGKHSWFGSGSRIIIPTRDEHL-LRTLRV-DGVYKVEKLD 262 (720)
Q Consensus 204 ~------~----------kr-~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIivTTR~~~v-~~~~~~-~~~~~l~~L~ 262 (720)
+ . +. =.+|||+++.. +.|..+......+..-+|.|..|..-.. -...-. -..|..++|.
T Consensus 110 k~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~SRC~KfrFk~L~ 189 (346)
T KOG0989|consen 110 KNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVSRCQKFRFKKLK 189 (346)
T ss_pred cCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHHhhHHHhcCCCcc
Confidence 2 1 12 35779999875 5599999999888888886666544332 211111 1368899999
Q ss_pred HHHHHHHHHHHhcCCCCCchHHHHHHHHHHHhCCC-chHHHHhhhhcc-CCCHHHHHHHHhhhh-cCCchhHHHHHHhhh
Q 047161 263 DDEALELFNKRAFDGQPSKDYVELIKRIVKYADGL-PFALETLGSVLF-GRSVDGWRSTLERLN-KHSADEILDVLEISF 339 (720)
Q Consensus 263 ~~~s~~Lf~~~af~~~~~~~~~~~~~~i~~~c~gl-PLai~~~g~~l~-~k~~~~W~~~l~~l~-~~~~~~il~~L~lSy 339 (720)
+++..+-+...|-+....-+ .+.-+.|+++++|- --|+.++-++-. ++.... ..+.+.+. -.+++.+...|++.+
T Consensus 190 d~~iv~rL~~Ia~~E~v~~d-~~al~~I~~~S~GdLR~Ait~Lqsls~~gk~It~-~~~~e~~~GvVp~~~l~~lle~a~ 267 (346)
T KOG0989|consen 190 DEDIVDRLEKIASKEGVDID-DDALKLIAKISDGDLRRAITTLQSLSLLGKRITT-SLVNEELAGVVPDEKLLDLLELAL 267 (346)
T ss_pred hHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHcCCcHHHHHHHHHHhhccCcccch-HHHHHHHhccCCHHHHHHHHHHHH
Confidence 99988888877754421111 23457788999884 445554433322 232110 11122333 345566666666655
No 159
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=85.60 E-value=38 Score=40.24 Aligned_cols=164 Identities=12% Similarity=0.145 Sum_probs=90.9
Q ss_pred CCCccccchhHHHHHHhhhccCCCe-EEEEEecCCCccccchhcHHHHHHHHHHhhhhc---------------------
Q 047161 127 LDDLVEMNSRLKKLRLLLDAESRDV-RMIGICGMGGVELSEKDGLIALQKQLLSKTLME--------------------- 184 (720)
Q Consensus 127 ~~~~vG~~~~~~~i~~~L~~~~~~~-~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~--------------------- 184 (720)
.+++||-+..++.|...+.. +.+ ..+-++|..|++.+ .+.+-+.+.+...
T Consensus 14 f~eiiGqe~v~~~L~~~i~~--~ri~Ha~Lf~Gp~G~GKT------t~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~ 85 (824)
T PRK07764 14 FAEVIGQEHVTEPLSTALDS--GRINHAYLFSGPRGCGKT------SSARILARSLNCVEGPTSTPCGECDSCVALAPGG 85 (824)
T ss_pred HHHhcCcHHHHHHHHHHHHh--CCCCceEEEECCCCCCHH------HHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCC
Confidence 36789988888888888753 333 34678999999332 2222222221100
Q ss_pred -cccee---cc-chhhHHHHH---HHH-----hcCCeEEEEecCCcH--HHHHHHhccCCCCCCCCeEEEEc-CChhhhh
Q 047161 185 -IDIEI---RN-DFDGIKMIK---REL-----RRRNVLVVIDDAVHI--RQLNRLAGKHSWFGSGSRIIIPT-RDEHLLR 248 (720)
Q Consensus 185 -~~~~~---~~-~~~~~~~l~---~~l-----~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIivTT-R~~~v~~ 248 (720)
...+. .. ....++.++ +.+ .+++=++|+|+++.. ..++.|...+..-.....+|++| ....+..
T Consensus 86 ~~~~dv~eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~kLl~ 165 (824)
T PRK07764 86 PGSLDVTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDKVIG 165 (824)
T ss_pred CCCCcEEEecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhH
Confidence 00111 00 111233333 322 245557889999854 44777777776655677766555 4445554
Q ss_pred hccc-cceEecCCCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHhCCCch
Q 047161 249 TLRV-DGVYKVEKLDDDEALELFNKRAFDGQPSKDYVELIKRIVKYADGLPF 299 (720)
Q Consensus 249 ~~~~-~~~~~l~~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~i~~~c~glPL 299 (720)
.+.. ...|++..++.++-.+.+.+.+-...... -.+....+++.++|-+.
T Consensus 166 TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv~i-d~eal~lLa~~sgGdlR 216 (824)
T PRK07764 166 TIRSRTHHYPFRLVPPEVMRGYLERICAQEGVPV-EPGVLPLVIRAGGGSVR 216 (824)
T ss_pred HHHhheeEEEeeCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHH
Confidence 4322 35789999999988877766432211111 12234567778888663
No 160
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=85.56 E-value=7 Score=45.99 Aligned_cols=153 Identities=19% Similarity=0.167 Sum_probs=79.6
Q ss_pred HHHHHHHhhhhccCCCccCCCCCccccchhHHHHHHhhhccCCCeEEEEEecCCCccccchhcHHHHHHHHHHhhhhcc-
Q 047161 107 FIQEIVKEISRKKGPRTLGILDDLVEMNSRLKKLRLLLDAESRDVRMIGICGMGGVELSEKDGLIALQKQLLSKTLMEI- 185 (720)
Q Consensus 107 ~i~~i~~~i~~~~~~~~~~~~~~~vG~~~~~~~i~~~L~~~~~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~~- 185 (720)
.+++...++..+..+. ..+.++||+.+++++.+.|.... ..=+-++|..|++. ..+.+.+...+....
T Consensus 164 ~l~~~~~~l~~~~r~~---~l~~~igr~~ei~~~~~~L~~~~--~~n~lL~G~pG~GK------T~l~~~la~~~~~~~~ 232 (731)
T TIGR02639 164 ALEKYTVDLTEKAKNG---KIDPLIGREDELERTIQVLCRRK--KNNPLLVGEPGVGK------TAIAEGLALRIAEGKV 232 (731)
T ss_pred HHHHHhhhHHHHHhcC---CCCcccCcHHHHHHHHHHHhcCC--CCceEEECCCCCCH------HHHHHHHHHHHHhCCC
Confidence 3444444444333332 23569999999999998885432 22345899999833 333333333321110
Q ss_pred -----cceec--cch----------hhHHHHHHHH----hcCCeEEEEecCCcH-----------HHHHHHhccCCCCCC
Q 047161 186 -----DIEIR--NDF----------DGIKMIKREL----RRRNVLVVIDDAVHI-----------RQLNRLAGKHSWFGS 233 (720)
Q Consensus 186 -----~~~~~--~~~----------~~~~~l~~~l----~~kr~LlVLDdv~~~-----------~~~~~l~~~~~~~~~ 233 (720)
..... +.. +....+++.+ +.++.+|++|++... +.-+-++..+. .
T Consensus 233 p~~l~~~~~~~~~~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~---~ 309 (731)
T TIGR02639 233 PENLKNAKIYSLDMGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALS---S 309 (731)
T ss_pred chhhcCCeEEEecHHHHhhhccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHh---C
Confidence 00010 000 1112344333 246789999998733 11223333332 3
Q ss_pred CC-eEEEEcCChhhhhh--------ccccceEecCCCCHHHHHHHHHHHh
Q 047161 234 GS-RIIIPTRDEHLLRT--------LRVDGVYKVEKLDDDEALELFNKRA 274 (720)
Q Consensus 234 gs-rIivTTR~~~v~~~--------~~~~~~~~l~~L~~~~s~~Lf~~~a 274 (720)
|. ++|-+|...+.... -.. .++++++++.++..+++....
T Consensus 310 g~i~~IgaTt~~e~~~~~~~d~al~rRf-~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 310 GKLRCIGSTTYEEYKNHFEKDRALSRRF-QKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred CCeEEEEecCHHHHHHHhhhhHHHHHhC-ceEEeCCCCHHHHHHHHHHHH
Confidence 33 34444443222111 122 368999999999999998644
No 161
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=85.19 E-value=42 Score=38.52 Aligned_cols=167 Identities=14% Similarity=0.164 Sum_probs=92.5
Q ss_pred CCCccccchhHHHHHHhhhccCCCe-EEEEEecCCCccccchhcHHHHH-HHHHHh-----------------hhhcccc
Q 047161 127 LDDLVEMNSRLKKLRLLLDAESRDV-RMIGICGMGGVELSEKDGLIALQ-KQLLSK-----------------TLMEIDI 187 (720)
Q Consensus 127 ~~~~vG~~~~~~~i~~~L~~~~~~~-~vi~I~G~gGi~vs~~~~~~~~~-~~il~~-----------------~~~~~~~ 187 (720)
.+++||-+..++.+...+.. +.+ ..+-++|..|++.+. ...+. +.+... +......
T Consensus 16 f~~viGq~~~~~~L~~~i~~--~~l~hayLf~Gp~G~GKtt---~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~ 90 (614)
T PRK14971 16 FESVVGQEALTTTLKNAIAT--NKLAHAYLFCGPRGVGKTT---CARIFAKTINCQNLTADGEACNECESCVAFNEQRSY 90 (614)
T ss_pred HHHhcCcHHHHHHHHHHHHc--CCCCeeEEEECCCCCCHHH---HHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCC
Confidence 36789988888888888743 334 346789999984443 11111 112100 0000001
Q ss_pred ee---c-cchhhHHHHHHHH--------hcCCeEEEEecCCcH--HHHHHHhccCCCCCCCCeEEE-EcCChhhhhhccc
Q 047161 188 EI---R-NDFDGIKMIKREL--------RRRNVLVVIDDAVHI--RQLNRLAGKHSWFGSGSRIII-PTRDEHLLRTLRV 252 (720)
Q Consensus 188 ~~---~-~~~~~~~~l~~~l--------~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIiv-TTR~~~v~~~~~~ 252 (720)
+. . ......+.+++.+ .+++=++|+|++... ..++.|...+.....++.+|+ ||+...+......
T Consensus 91 n~~~ld~~~~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL~tt~~~kIl~tI~S 170 (614)
T PRK14971 91 NIHELDAASNNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATTEKHKILPTILS 170 (614)
T ss_pred ceEEecccccCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEEEeCCchhchHHHHh
Confidence 10 0 0011123333332 244557899998754 457777777665556677665 4455555544322
Q ss_pred -cceEecCCCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHhCCCch
Q 047161 253 -DGVYKVEKLDDDEALELFNKRAFDGQPSKDYVELIKRIVKYADGLPF 299 (720)
Q Consensus 253 -~~~~~l~~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~i~~~c~glPL 299 (720)
..++++++++.++....+.+.+-......+ .+....+++.++|-.-
T Consensus 171 Rc~iv~f~~ls~~ei~~~L~~ia~~egi~i~-~~al~~La~~s~gdlr 217 (614)
T PRK14971 171 RCQIFDFNRIQVADIVNHLQYVASKEGITAE-PEALNVIAQKADGGMR 217 (614)
T ss_pred hhheeecCCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHcCCCHH
Confidence 347899999999988888765543211111 2345677888888654
No 162
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=84.60 E-value=49 Score=37.01 Aligned_cols=166 Identities=13% Similarity=0.094 Sum_probs=91.5
Q ss_pred CCCccccchhHHHHHHhhhccCCCe-EEEEEecCCCccccchhcHHHHHHHHHHhhhh--------------------cc
Q 047161 127 LDDLVEMNSRLKKLRLLLDAESRDV-RMIGICGMGGVELSEKDGLIALQKQLLSKTLM--------------------EI 185 (720)
Q Consensus 127 ~~~~vG~~~~~~~i~~~L~~~~~~~-~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~--------------------~~ 185 (720)
.+++||-+..++.+.+.+.. +.+ ..+-++|..|++.+ .+.+-+.+.+.. ..
T Consensus 15 f~divGq~~v~~~L~~~~~~--~~l~ha~Lf~Gp~G~GKT------t~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~ 86 (509)
T PRK14958 15 FQEVIGQAPVVRALSNALDQ--QYLHHAYLFTGTRGVGKT------TISRILAKCLNCEKGVSANPCNDCENCREIDEGR 86 (509)
T ss_pred HHHhcCCHHHHHHHHHHHHh--CCCCeeEEEECCCCCCHH------HHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCC
Confidence 36799999999999888853 233 24568999998333 222222222110 00
Q ss_pred cce---ec-cchhhHHHHHHHHh--------cCCeEEEEecCCcH--HHHHHHhccCCCCCCCCeEEEEcCC-hhhhhhc
Q 047161 186 DIE---IR-NDFDGIKMIKRELR--------RRNVLVVIDDAVHI--RQLNRLAGKHSWFGSGSRIIIPTRD-EHLLRTL 250 (720)
Q Consensus 186 ~~~---~~-~~~~~~~~l~~~l~--------~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIivTTR~-~~v~~~~ 250 (720)
..+ .. .....++.+++.+. ++.-++|+|+|+.. ...+.|...+....+..++|++|.+ .++....
T Consensus 87 ~~d~~eidaas~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlattd~~kl~~tI 166 (509)
T PRK14958 87 FPDLFEVDAASRTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDHHKLPVTV 166 (509)
T ss_pred CceEEEEcccccCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEECChHhchHHH
Confidence 001 11 11233444444432 45567889999853 4567777666655566777765544 3443322
Q ss_pred cc-cceEecCCCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHhCCCchHH
Q 047161 251 RV-DGVYKVEKLDDDEALELFNKRAFDGQPSKDYVELIKRIVKYADGLPFAL 301 (720)
Q Consensus 251 ~~-~~~~~l~~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~i~~~c~glPLai 301 (720)
.. -..+++++++.++-.+.+.+.+-.....-+ .+....+++.++|-+--+
T Consensus 167 ~SRc~~~~f~~l~~~~i~~~l~~il~~egi~~~-~~al~~ia~~s~GslR~a 217 (509)
T PRK14958 167 LSRCLQFHLAQLPPLQIAAHCQHLLKEENVEFE-NAALDLLARAANGSVRDA 217 (509)
T ss_pred HHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHcCCcHHHH
Confidence 11 246889999988876655444322211111 223456788888877544
No 163
>CHL00176 ftsH cell division protein; Validated
Probab=84.37 E-value=20 Score=41.27 Aligned_cols=163 Identities=17% Similarity=0.211 Sum_probs=88.4
Q ss_pred CCCCccccchhHHHHHHhhh---c-------cCCCeEEEEEecCCCccccchhcHHHHHHHHHHhhhhcccceec-----
Q 047161 126 ILDDLVEMNSRLKKLRLLLD---A-------ESRDVRMIGICGMGGVELSEKDGLIALQKQLLSKTLMEIDIEIR----- 190 (720)
Q Consensus 126 ~~~~~vG~~~~~~~i~~~L~---~-------~~~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~~~~~~~----- 190 (720)
..++++|.++.++++.+.+. . +..-.+-|-++|..|. +...+.+.+... .+.......
T Consensus 181 ~f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGT------GKT~LAralA~e-~~~p~i~is~s~f~ 253 (638)
T CHL00176 181 TFRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGT------GKTLLAKAIAGE-AEVPFFSISGSEFV 253 (638)
T ss_pred CHHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCC------CHHHHHHHHHHH-hCCCeeeccHHHHH
Confidence 34578999988888766542 1 1112345789999999 333334444333 111111100
Q ss_pred ------cchhhHHHHHHHHhcCCeEEEEecCCcHH----------------HHHHHhccCCCC--CCCCeEEEEcCChhh
Q 047161 191 ------NDFDGIKMIKRELRRRNVLVVIDDAVHIR----------------QLNRLAGKHSWF--GSGSRIIIPTRDEHL 246 (720)
Q Consensus 191 ------~~~~~~~~l~~~l~~kr~LlVLDdv~~~~----------------~~~~l~~~~~~~--~~gsrIivTTR~~~v 246 (720)
........+.....+...+|++||++... .+..+...++.+ ..|-.||.||...+.
T Consensus 254 ~~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~ 333 (638)
T CHL00176 254 EMFVGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVDI 333 (638)
T ss_pred HHhhhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCchHh
Confidence 01111222333335678899999996431 133444333322 235567777776544
Q ss_pred hhh-----ccccceEecCCCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHhCCC
Q 047161 247 LRT-----LRVDGVYKVEKLDDDEALELFNKRAFDGQPSKDYVELIKRIVKYADGL 297 (720)
Q Consensus 247 ~~~-----~~~~~~~~l~~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~i~~~c~gl 297 (720)
... -..+..+.+...+.++-.++++.++-...... ......+++.+.|.
T Consensus 334 LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~~--d~~l~~lA~~t~G~ 387 (638)
T CHL00176 334 LDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLSP--DVSLELIARRTPGF 387 (638)
T ss_pred hhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccch--hHHHHHHHhcCCCC
Confidence 332 23466788999999999999988775431111 11234566666663
No 164
>COG3903 Predicted ATPase [General function prediction only]
Probab=83.99 E-value=1.6 Score=45.79 Aligned_cols=148 Identities=24% Similarity=0.260 Sum_probs=97.8
Q ss_pred hHHHHHHHHhcCCeEEEEecCCcHHH-HHHHhccCCCCCCCCeEEEEcCChhhhhhccccceEecCCCCHH-HHHHHHHH
Q 047161 195 GIKMIKRELRRRNVLVVIDDAVHIRQ-LNRLAGKHSWFGSGSRIIIPTRDEHLLRTLRVDGVYKVEKLDDD-EALELFNK 272 (720)
Q Consensus 195 ~~~~l~~~l~~kr~LlVLDdv~~~~~-~~~l~~~~~~~~~gsrIivTTR~~~v~~~~~~~~~~~l~~L~~~-~s~~Lf~~ 272 (720)
....+..+..++|.++|+||--+... -..+...+..+.+.-+|+.|+|+.... ..+..+.++.|+.- ++.++|..
T Consensus 77 ~~~~~~~~~~~rr~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l~---~ge~~~~~~~L~~~d~a~~lf~~ 153 (414)
T COG3903 77 AVDTLVRRIGDRRALLVLDNCEHLLDACAALIVALLGACPRLAILATSREAILV---AGEVHRRVPSLSLFDEAIELFVC 153 (414)
T ss_pred HHHHHHHHHhhhhHHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhcc---cccccccCCccccCCchhHHHHH
Confidence 45567788889999999998765432 223333333344556788888865543 33557788888765 79999987
Q ss_pred HhcCC----CCCchHHHHHHHHHHHhCCCchHHHHhhhhccCCCHHHHHHHHh-h---hhcC------CchhHHHHHHhh
Q 047161 273 RAFDG----QPSKDYVELIKRIVKYADGLPFALETLGSVLFGRSVDGWRSTLE-R---LNKH------SADEILDVLEIS 338 (720)
Q Consensus 273 ~af~~----~~~~~~~~~~~~i~~~c~glPLai~~~g~~l~~k~~~~W~~~l~-~---l~~~------~~~~il~~L~lS 338 (720)
.|-.. .....-.....+|.++..|.|++|...++..+.....+--+-++ . ++.. ........++.|
T Consensus 154 ra~~~~~~f~l~~~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws 233 (414)
T COG3903 154 RAVLVALSFWLTDDNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWS 233 (414)
T ss_pred HHHHhccceeecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhh
Confidence 77433 11223345567888999999999999998888765555444443 1 2221 124457788888
Q ss_pred hcCCchh
Q 047161 339 FNGLKGR 345 (720)
Q Consensus 339 yn~L~~~ 345 (720)
|--|++.
T Consensus 234 ~~lLtgw 240 (414)
T COG3903 234 YALLTGW 240 (414)
T ss_pred hHhhhhH
Confidence 8888766
No 165
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=83.76 E-value=23 Score=40.51 Aligned_cols=169 Identities=14% Similarity=0.113 Sum_probs=92.8
Q ss_pred CCCccccchhHHHHHHhhhccCCCeEEEEEecCCCccccchhcHHHHHHHHHHhhh---------------------hcc
Q 047161 127 LDDLVEMNSRLKKLRLLLDAESRDVRMIGICGMGGVELSEKDGLIALQKQLLSKTL---------------------MEI 185 (720)
Q Consensus 127 ~~~~vG~~~~~~~i~~~L~~~~~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~---------------------~~~ 185 (720)
.+++||-+.-++.+...+..+. --..+-++|..|++.+ .+.+.+.+.+. ...
T Consensus 15 ~~eiiGq~~~~~~L~~~i~~~~-i~~a~Lf~Gp~G~GKT------tlA~~lA~~l~c~~~~~~~~~c~~c~~c~~i~~~~ 87 (585)
T PRK14950 15 FAELVGQEHVVQTLRNAIAEGR-VAHAYLFTGPRGVGKT------STARILAKAVNCTTNDPKGRPCGTCEMCRAIAEGS 87 (585)
T ss_pred HHHhcCCHHHHHHHHHHHHhCC-CceEEEEECCCCCCHH------HHHHHHHHHhcCCCCCCCCCCCccCHHHHHHhcCC
Confidence 3679999988888888775321 1234568999998322 22222222111 000
Q ss_pred ccee---cc-chhhHH---HHHHHHh-----cCCeEEEEecCCcH--HHHHHHhccCCCCCCCCeEEEEcCC-hhhhhhc
Q 047161 186 DIEI---RN-DFDGIK---MIKRELR-----RRNVLVVIDDAVHI--RQLNRLAGKHSWFGSGSRIIIPTRD-EHLLRTL 250 (720)
Q Consensus 186 ~~~~---~~-~~~~~~---~l~~~l~-----~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIivTTR~-~~v~~~~ 250 (720)
..+. .. .....+ .+.+.+. +++-++|+|++... +..+.|...+........+|++|.+ ..+....
T Consensus 88 ~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll~tI 167 (585)
T PRK14950 88 AVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVPATI 167 (585)
T ss_pred CCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhhHHH
Confidence 1110 00 011122 2223222 45668999998743 4567777666554556677666643 3443322
Q ss_pred c-ccceEecCCCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHhCCCchHHHH
Q 047161 251 R-VDGVYKVEKLDDDEALELFNKRAFDGQPSKDYVELIKRIVKYADGLPFALET 303 (720)
Q Consensus 251 ~-~~~~~~l~~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~i~~~c~glPLai~~ 303 (720)
. -...++++.++.++....+.+.+-.....- -.+....+++.++|.+..+..
T Consensus 168 ~SR~~~i~f~~l~~~el~~~L~~~a~~egl~i-~~eal~~La~~s~Gdlr~al~ 220 (585)
T PRK14950 168 LSRCQRFDFHRHSVADMAAHLRKIAAAEGINL-EPGALEAIARAATGSMRDAEN 220 (585)
T ss_pred HhccceeeCCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHHH
Confidence 1 124678889999988888777654331111 124466788899998864443
No 166
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=83.72 E-value=52 Score=37.00 Aligned_cols=164 Identities=13% Similarity=0.140 Sum_probs=90.5
Q ss_pred CCCccccchhHHHHHHhhhccCCCe-EEEEEecCCCccccchhcHHHHHHHHHHhhhhc--------------------c
Q 047161 127 LDDLVEMNSRLKKLRLLLDAESRDV-RMIGICGMGGVELSEKDGLIALQKQLLSKTLME--------------------I 185 (720)
Q Consensus 127 ~~~~vG~~~~~~~i~~~L~~~~~~~-~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~--------------------~ 185 (720)
.+++||-+..++.+.+.+.. +.+ ..+-++|..|++.+ .+.+-+.+.+... .
T Consensus 15 f~divGq~~v~~~L~~~i~~--~~~~ha~Lf~Gp~G~GKT------t~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~ 86 (527)
T PRK14969 15 FSELVGQEHVVRALTNALEQ--QRLHHAYLFTGTRGVGKT------TLARILAKSLNCETGVTATPCGVCSACLEIDSGR 86 (527)
T ss_pred HHHhcCcHHHHHHHHHHHHc--CCCCEEEEEECCCCCCHH------HHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCC
Confidence 36789999888888888753 233 34568999998433 2222222221110 0
Q ss_pred cce---ec-cchhhHHHHHHHH--------hcCCeEEEEecCCcH--HHHHHHhccCCCCCCCCeEEEEcCC-hhhhhhc
Q 047161 186 DIE---IR-NDFDGIKMIKREL--------RRRNVLVVIDDAVHI--RQLNRLAGKHSWFGSGSRIIIPTRD-EHLLRTL 250 (720)
Q Consensus 186 ~~~---~~-~~~~~~~~l~~~l--------~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIivTTR~-~~v~~~~ 250 (720)
..+ .. ......+.+++.+ .+++-++|+|+++.. ...+.+...+........+|++|.+ ..+....
T Consensus 87 ~~d~~ei~~~~~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t~d~~kil~tI 166 (527)
T PRK14969 87 FVDLIEVDAASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPQKIPVTV 166 (527)
T ss_pred CCceeEeeccccCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEeCChhhCchhH
Confidence 000 00 0012233344332 255668999999854 3466777666654456666666644 3333221
Q ss_pred cc-cceEecCCCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHhCCCch
Q 047161 251 RV-DGVYKVEKLDDDEALELFNKRAFDGQPSKDYVELIKRIVKYADGLPF 299 (720)
Q Consensus 251 ~~-~~~~~l~~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~i~~~c~glPL 299 (720)
.. -..++++.++.++..+.+.+.+-...... -.+....+++.++|.+-
T Consensus 167 ~SRc~~~~f~~l~~~~i~~~L~~il~~egi~~-~~~al~~la~~s~Gslr 215 (527)
T PRK14969 167 LSRCLQFNLKQMPPPLIVSHLQHILEQENIPF-DATALQLLARAAAGSMR 215 (527)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHH
Confidence 11 24788999999988877766543221111 12334667888888774
No 167
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=83.44 E-value=3.4 Score=43.02 Aligned_cols=144 Identities=18% Similarity=0.251 Sum_probs=81.4
Q ss_pred CCCCccccchhHHHHHHhhhccCCCe-EEEEEecCCCc--------------------cccchhcHHHHHHHHHHhhh-h
Q 047161 126 ILDDLVEMNSRLKKLRLLLDAESRDV-RMIGICGMGGV--------------------ELSEKDGLIALQKQLLSKTL-M 183 (720)
Q Consensus 126 ~~~~~vG~~~~~~~i~~~L~~~~~~~-~vi~I~G~gGi--------------------~vs~~~~~~~~~~~il~~~~-~ 183 (720)
..+.+.+|+.+++.+..++...+..+ ..|-|+|-.|. +.-..|..+.+.++|+.+.. .
T Consensus 4 l~~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~~vw~n~~ecft~~~lle~IL~~~~~~ 83 (438)
T KOG2543|consen 4 LEPNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLNLENVWLNCVECFTYAILLEKILNKSQLA 83 (438)
T ss_pred cccCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcCCcceeeehHHhccHHHHHHHHHHHhccC
Confidence 34678899999999999996555533 44578999988 23345677777888888742 1
Q ss_pred ccccee-----ccchhhHHHHHH--HHh--cCCeEEEEecCCcHHHHHH-----Hh---ccCCCCCCCCeEEEEcCC---
Q 047161 184 EIDIEI-----RNDFDGIKMIKR--ELR--RRNVLVVIDDAVHIRQLNR-----LA---GKHSWFGSGSRIIIPTRD--- 243 (720)
Q Consensus 184 ~~~~~~-----~~~~~~~~~l~~--~l~--~kr~LlVLDdv~~~~~~~~-----l~---~~~~~~~~gsrIivTTR~--- 243 (720)
.++... .+..+.+..+.+ ... +++++||||+++...+.+. +. ...+ .+ .-+|+++--
T Consensus 84 d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~--~~-~i~iils~~~~e 160 (438)
T KOG2543|consen 84 DKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLN--EP-TIVIILSAPSCE 160 (438)
T ss_pred CCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhC--CC-ceEEEEeccccH
Confidence 111111 122222333333 122 4699999999987655222 11 1222 12 223333322
Q ss_pred hhhhhhccccc--eEecCCCCHHHHHHHHHH
Q 047161 244 EHLLRTLRVDG--VYKVEKLDDDEALELFNK 272 (720)
Q Consensus 244 ~~v~~~~~~~~--~~~l~~L~~~~s~~Lf~~ 272 (720)
++-...+|+.. +...+.-+.+|-.+++.+
T Consensus 161 ~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~ 191 (438)
T KOG2543|consen 161 KQYLINTGTLEIVVLHFPQYSVEETQVILSR 191 (438)
T ss_pred HHhhcccCCCCceEEecCCCCHHHHHHHHhc
Confidence 22222245543 455667788888887754
No 168
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=82.97 E-value=1 Score=47.16 Aligned_cols=16 Identities=38% Similarity=0.719 Sum_probs=11.8
Q ss_pred CCCCceeeecCCCCCC
Q 047161 455 GAPNLEELILDGCKRL 470 (720)
Q Consensus 455 ~l~~L~~L~L~~~~~l 470 (720)
+..+|++|-+++|+.+
T Consensus 318 ~~~~L~~l~l~~c~~f 333 (483)
T KOG4341|consen 318 HCHNLQVLELSGCQQF 333 (483)
T ss_pred CCCceEEEeccccchh
Confidence 5578888888888754
No 169
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=82.76 E-value=29 Score=40.19 Aligned_cols=165 Identities=15% Similarity=0.173 Sum_probs=89.7
Q ss_pred CCCccccchhHHHHHHhhhccCCCeEEEEEecCCCccccchhcHHHHHHHHHHhhhhcc-----------------ccee
Q 047161 127 LDDLVEMNSRLKKLRLLLDAESRDVRMIGICGMGGVELSEKDGLIALQKQLLSKTLMEI-----------------DIEI 189 (720)
Q Consensus 127 ~~~~vG~~~~~~~i~~~L~~~~~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~~-----------------~~~~ 189 (720)
..++||-+..++.+...+..+ .-...+-++|..|++.+ .+.+.+...+.... ..+.
T Consensus 17 f~dIiGQe~~v~~L~~aI~~~-rl~HAYLF~GP~GtGKT------t~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~Dv 89 (725)
T PRK07133 17 FDDIVGQDHIVQTLKNIIKSN-KISHAYLFSGPRGTGKT------SVAKIFANALNCSHKTDLLEPCQECIENVNNSLDI 89 (725)
T ss_pred HHHhcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCcHH------HHHHHHHHHhcccccCCCCCchhHHHHhhcCCCcE
Confidence 357889888888888877432 12334567999998332 22222222211100 0010
Q ss_pred ---cc----chhhHHHHHHHHh-----cCCeEEEEecCCcH--HHHHHHhccCCCCCCCCeEE-EEcCChhhhhhcc-cc
Q 047161 190 ---RN----DFDGIKMIKRELR-----RRNVLVVIDDAVHI--RQLNRLAGKHSWFGSGSRII-IPTRDEHLLRTLR-VD 253 (720)
Q Consensus 190 ---~~----~~~~~~~l~~~l~-----~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIi-vTTR~~~v~~~~~-~~ 253 (720)
.. ..+.++.+.+.+. +++-++|+|++... ..+..|...+........+| +||+...+..... -.
T Consensus 90 ieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~TI~SRc 169 (725)
T PRK07133 90 IEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPLTILSRV 169 (725)
T ss_pred EEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhHHHHhhc
Confidence 00 0111233333332 56668899998743 45777777666544555555 4555555543321 12
Q ss_pred ceEecCCCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHhCCCch
Q 047161 254 GVYKVEKLDDDEALELFNKRAFDGQPSKDYVELIKRIVKYADGLPF 299 (720)
Q Consensus 254 ~~~~l~~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~i~~~c~glPL 299 (720)
..+++.+++.++..+.+...+-......+ .+....+++.++|-+-
T Consensus 170 q~ieF~~L~~eeI~~~L~~il~kegI~id-~eAl~~LA~lS~GslR 214 (725)
T PRK07133 170 QRFNFRRISEDEIVSRLEFILEKENISYE-KNALKLIAKLSSGSLR 214 (725)
T ss_pred eeEEccCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHcCCCHH
Confidence 48899999999988877765432211111 2335567788888653
No 170
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=82.50 E-value=9.9 Score=37.50 Aligned_cols=117 Identities=17% Similarity=0.117 Sum_probs=64.2
Q ss_pred cCCCCCccccchhHHHHHHhh---hccCCCeEEEEEecCCCccccchhcHHHHHHHHHHhhhhccccee-----ccchhh
Q 047161 124 LGILDDLVEMNSRLKKLRLLL---DAESRDVRMIGICGMGGVELSEKDGLIALQKQLLSKTLMEIDIEI-----RNDFDG 195 (720)
Q Consensus 124 ~~~~~~~vG~~~~~~~i~~~L---~~~~~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~~~~~~-----~~~~~~ 195 (720)
+...++++|+|.+++.|++=. ..+. ...-|-+||..|.+. ..+.+.++... ....... .+...
T Consensus 23 ~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~-pannvLL~G~rGtGK------SSlVkall~~y-~~~GLRlIev~k~~L~~- 93 (249)
T PF05673_consen 23 PIRLDDLIGIERQKEALIENTEQFLQGL-PANNVLLWGARGTGK------SSLVKALLNEY-ADQGLRLIEVSKEDLGD- 93 (249)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHHcCC-CCcceEEecCCCCCH------HHHHHHHHHHH-hhcCceEEEECHHHhcc-
Confidence 345567999999998886422 1222 233455799999844 45555565552 2222211 11111
Q ss_pred HHHHHHHH--hcCCeEEEEecCC---cHHHHHHHhccCCCC---CCC-CeEEEEcCChhhhhh
Q 047161 196 IKMIKREL--RRRNVLVVIDDAV---HIRQLNRLAGKHSWF---GSG-SRIIIPTRDEHLLRT 249 (720)
Q Consensus 196 ~~~l~~~l--~~kr~LlVLDdv~---~~~~~~~l~~~~~~~---~~g-srIivTTR~~~v~~~ 249 (720)
...+-+.+ +..||+|.+||.. ++.....|+..+..+ .|. -.|.+||.-+++...
T Consensus 94 l~~l~~~l~~~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSNRRHLv~E 156 (249)
T PF05673_consen 94 LPELLDLLRDRPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSNRRHLVPE 156 (249)
T ss_pred HHHHHHHHhcCCCCEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecchhhccch
Confidence 23334444 3579999999985 233456666655422 222 345556655566544
No 171
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=81.85 E-value=21 Score=37.41 Aligned_cols=94 Identities=15% Similarity=0.163 Sum_probs=60.6
Q ss_pred CCeEEEEecCCcH--HHHHHHhccCCCCCCCCeEEEEcCCh-hhhhhccc-cceEecCCCCHHHHHHHHHHHhcCCCCCc
Q 047161 206 RNVLVVIDDAVHI--RQLNRLAGKHSWFGSGSRIIIPTRDE-HLLRTLRV-DGVYKVEKLDDDEALELFNKRAFDGQPSK 281 (720)
Q Consensus 206 kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIivTTR~~-~v~~~~~~-~~~~~l~~L~~~~s~~Lf~~~af~~~~~~ 281 (720)
++=.+|+|+++.. .....|...+..-..++.+|+||.+. .+...... -..+.+.+++.+++.+.+.... ....
T Consensus 106 ~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~-~~~~-- 182 (328)
T PRK05707 106 GRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQAL-PESD-- 182 (328)
T ss_pred CCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhc-ccCC--
Confidence 3334567999853 45666666665544677777777765 44444322 2368999999999998887653 1111
Q ss_pred hHHHHHHHHHHHhCCCchHHHHh
Q 047161 282 DYVELIKRIVKYADGLPFALETL 304 (720)
Q Consensus 282 ~~~~~~~~i~~~c~glPLai~~~ 304 (720)
.+-...++..++|.|..+..+
T Consensus 183 --~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 183 --ERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred --hHHHHHHHHHcCCCHHHHHHH
Confidence 223456788999999765544
No 172
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=81.31 E-value=72 Score=36.29 Aligned_cols=164 Identities=16% Similarity=0.158 Sum_probs=91.4
Q ss_pred CCCccccchhHHHHHHhhhccCCCeE-EEEEecCCCccccchhcHHHHHHHHHHhhhh----------------------
Q 047161 127 LDDLVEMNSRLKKLRLLLDAESRDVR-MIGICGMGGVELSEKDGLIALQKQLLSKTLM---------------------- 183 (720)
Q Consensus 127 ~~~~vG~~~~~~~i~~~L~~~~~~~~-vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~---------------------- 183 (720)
.+++||-+..++.+...+.. +.+. .+-++|..|++.+. +.+-+...+..
T Consensus 12 f~eivGq~~i~~~L~~~i~~--~r~~ha~Lf~Gp~G~GKTt------~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~~~ 83 (584)
T PRK14952 12 FAEVVGQEHVTEPLSSALDA--GRINHAYLFSGPRGCGKTS------SARILARSLNCAQGPTATPCGVCESCVALAPNG 83 (584)
T ss_pred HHHhcCcHHHHHHHHHHHHc--CCCCeEEEEECCCCCCHHH------HHHHHHHHhccccCCCCCcccccHHHHHhhccc
Confidence 36799988888888888753 3343 45789999993222 22222222110
Q ss_pred ccccee---cc-chhhHHHHH---HHH-----hcCCeEEEEecCCc--HHHHHHHhccCCCCCCCCeEEE-EcCChhhhh
Q 047161 184 EIDIEI---RN-DFDGIKMIK---REL-----RRRNVLVVIDDAVH--IRQLNRLAGKHSWFGSGSRIII-PTRDEHLLR 248 (720)
Q Consensus 184 ~~~~~~---~~-~~~~~~~l~---~~l-----~~kr~LlVLDdv~~--~~~~~~l~~~~~~~~~gsrIiv-TTR~~~v~~ 248 (720)
....+. +. ....++.++ +.+ .+++=++|+|++.. ....+.|...+........+|+ ||....+..
T Consensus 84 ~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~kll~ 163 (584)
T PRK14952 84 PGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLP 163 (584)
T ss_pred CCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHhhHH
Confidence 000111 00 111233333 222 24556889999874 4557777777765555666555 444455544
Q ss_pred hccc-cceEecCCCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHhCCCch
Q 047161 249 TLRV-DGVYKVEKLDDDEALELFNKRAFDGQPSKDYVELIKRIVKYADGLPF 299 (720)
Q Consensus 249 ~~~~-~~~~~l~~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~i~~~c~glPL 299 (720)
.... ...|+...++.++..+.+.+.+-.....-+ .+....|++.++|-+-
T Consensus 164 TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~i~-~~al~~Ia~~s~GdlR 214 (584)
T PRK14952 164 TIRSRTHHYPFRLLPPRTMRALIARICEQEGVVVD-DAVYPLVIRAGGGSPR 214 (584)
T ss_pred HHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHcCCCHH
Confidence 3321 347899999999988777765543211111 2334567778888663
No 173
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=81.05 E-value=19 Score=39.98 Aligned_cols=143 Identities=17% Similarity=0.259 Sum_probs=79.1
Q ss_pred CCCccccchhHHHHHHhhhc-----------cCCCeEEEEEecCCCccccchhcHHHHHHHHHHhhhhc---------cc
Q 047161 127 LDDLVEMNSRLKKLRLLLDA-----------ESRDVRMIGICGMGGVELSEKDGLIALQKQLLSKTLME---------ID 186 (720)
Q Consensus 127 ~~~~vG~~~~~~~i~~~L~~-----------~~~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~---------~~ 186 (720)
..++.|.+..++++...+.. +-...+-|-++|..|.+. ..+.+.+...+... ..
T Consensus 181 ~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGK------T~LAKAlA~eL~~~i~~~~~~~~~f 254 (512)
T TIGR03689 181 YADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGK------TLIAKAVANSLAQRIGAETGDKSYF 254 (512)
T ss_pred HHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcH------HHHHHHHHHhhccccccccCCceeE
Confidence 35688899999888776531 112234577899999833 33444444442110 00
Q ss_pred ceec----------cchhhHHHHHHHHh-----cCCeEEEEecCCcHH---------H-----HHHHhccCCCCC--CCC
Q 047161 187 IEIR----------NDFDGIKMIKRELR-----RRNVLVVIDDAVHIR---------Q-----LNRLAGKHSWFG--SGS 235 (720)
Q Consensus 187 ~~~~----------~~~~~~~~l~~~l~-----~kr~LlVLDdv~~~~---------~-----~~~l~~~~~~~~--~gs 235 (720)
.... ........+.+..+ +++++|++|+++... + ...+...++... .+.
T Consensus 255 l~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~~~V 334 (512)
T TIGR03689 255 LNIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESLDNV 334 (512)
T ss_pred EeccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccCCce
Confidence 0000 00111222222222 478999999997431 1 223333333222 344
Q ss_pred eEEEEcCChhhhhh-----ccccceEecCCCCHHHHHHHHHHHhc
Q 047161 236 RIIIPTRDEHLLRT-----LRVDGVYKVEKLDDDEALELFNKRAF 275 (720)
Q Consensus 236 rIivTTR~~~v~~~-----~~~~~~~~l~~L~~~~s~~Lf~~~af 275 (720)
.||.||...+.... -..+..++++..+.++..++|.++.-
T Consensus 335 iVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~ 379 (512)
T TIGR03689 335 IVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLT 379 (512)
T ss_pred EEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhh
Confidence 56667765544321 24567899999999999999998753
No 174
>PF07725 LRR_3: Leucine Rich Repeat; InterPro: IPR011713 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by the IPR001611 from INTERPRO model.
Probab=80.47 E-value=1.5 Score=24.60 Aligned_cols=19 Identities=37% Similarity=0.941 Sum_probs=16.6
Q ss_pred cceEeeCCCCchhHHhhhc
Q 047161 426 KTLECNMCYRRIEQFWKGI 444 (720)
Q Consensus 426 ~l~~L~l~~~~i~~l~~~~ 444 (720)
++++|++++++++.+|.+.
T Consensus 1 ~LVeL~m~~S~lekLW~G~ 19 (20)
T PF07725_consen 1 NLVELNMPYSKLEKLWEGV 19 (20)
T ss_pred CcEEEECCCCChHHhcCcc
Confidence 4688999999999999875
No 175
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=80.17 E-value=44 Score=34.75 Aligned_cols=94 Identities=20% Similarity=0.193 Sum_probs=59.4
Q ss_pred cCCeEEEEecCCcH--HHHHHHhccCCCCCCCCeEEEEc-CChhhhhhccc-cceEecCCCCHHHHHHHHHHHhcCCCCC
Q 047161 205 RRNVLVVIDDAVHI--RQLNRLAGKHSWFGSGSRIIIPT-RDEHLLRTLRV-DGVYKVEKLDDDEALELFNKRAFDGQPS 280 (720)
Q Consensus 205 ~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIivTT-R~~~v~~~~~~-~~~~~l~~L~~~~s~~Lf~~~af~~~~~ 280 (720)
+++=++|+|++... .....|...+.... ...+|++| +-..+...... ...+++.+++.++..+.+.+.......
T Consensus 123 ~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~fILi~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~~- 200 (314)
T PRK07399 123 APRKVVVIEDAETMNEAAANALLKTLEEPG-NGTLILIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEIL- 200 (314)
T ss_pred CCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCeEEEEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhccccc-
Confidence 56667889998754 34666666664444 34555554 44555554432 247899999999999998876421111
Q ss_pred chHHHHHHHHHHHhCCCchHHHH
Q 047161 281 KDYVELIKRIVKYADGLPFALET 303 (720)
Q Consensus 281 ~~~~~~~~~i~~~c~glPLai~~ 303 (720)
...-..++..++|-|..+..
T Consensus 201 ---~~~~~~l~~~a~Gs~~~al~ 220 (314)
T PRK07399 201 ---NINFPELLALAQGSPGAAIA 220 (314)
T ss_pred ---hhHHHHHHHHcCCCHHHHHH
Confidence 11125778899999976554
No 176
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=79.99 E-value=12 Score=41.09 Aligned_cols=119 Identities=13% Similarity=0.070 Sum_probs=62.7
Q ss_pred eEEEEEecCCCccccchhcHHHHHHHHHHhhhhc-ccceeccchhhH------------HHHHHHHhcCCeEEEEecCCc
Q 047161 151 VRMIGICGMGGVELSEKDGLIALQKQLLSKTLME-IDIEIRNDFDGI------------KMIKRELRRRNVLVVIDDAVH 217 (720)
Q Consensus 151 ~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~-~~~~~~~~~~~~------------~~l~~~l~~kr~LlVLDdv~~ 217 (720)
..-+-|+|..|+ |..++.+.+...+... ...--.+.+... +..+..++ +.-++++||+..
T Consensus 141 ~npl~L~G~~G~------GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~~~~~l~~~~~~~f~~~~~-~~dvLiIDDiq~ 213 (445)
T PRK12422 141 FNPIYLFGPEGS------GKTHLMQAAVHALRESGGKILYVRSELFTEHLVSAIRSGEMQRFRQFYR-NVDALFIEDIEV 213 (445)
T ss_pred CceEEEEcCCCC------CHHHHHHHHHHHHHHcCCCEEEeeHHHHHHHHHHHHhcchHHHHHHHcc-cCCEEEEcchhh
Confidence 345789999999 4455555555543211 101001111111 12222232 344788899865
Q ss_pred HHH----HHHHhccCCC-CCCCCeEEEEcCCh---------hhhhhccccceEecCCCCHHHHHHHHHHHhcC
Q 047161 218 IRQ----LNRLAGKHSW-FGSGSRIIIPTRDE---------HLLRTLRVDGVYKVEKLDDDEALELFNKRAFD 276 (720)
Q Consensus 218 ~~~----~~~l~~~~~~-~~~gsrIivTTR~~---------~v~~~~~~~~~~~l~~L~~~~s~~Lf~~~af~ 276 (720)
... -+.+...+.. ...|..||+||... .+...+.....+++++++.++-..++.+++-.
T Consensus 214 l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k~~~ 286 (445)
T PRK12422 214 FSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLERKAEA 286 (445)
T ss_pred hcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHHHHH
Confidence 321 1222222211 12356788888542 22223333458899999999999999887743
No 177
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=79.20 E-value=55 Score=35.88 Aligned_cols=138 Identities=16% Similarity=0.197 Sum_probs=72.1
Q ss_pred eEEEEEecCCCccccchhcHHHHHHHHHHhhhhcc-ccee--ccchhhH------------HHHHHHHhcCCeEEEEecC
Q 047161 151 VRMIGICGMGGVELSEKDGLIALQKQLLSKTLMEI-DIEI--RNDFDGI------------KMIKRELRRRNVLVVIDDA 215 (720)
Q Consensus 151 ~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~~-~~~~--~~~~~~~------------~~l~~~l~~kr~LlVLDdv 215 (720)
..-+-|+|..|. |..++.+.+...+.... .... .+.++.. ...++.++.+.-+|++||+
T Consensus 130 ~n~l~lyG~~G~------GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~~~~~~~~~~~~f~~~~~~~~dvLlIDDi 203 (440)
T PRK14088 130 YNPLFIYGGVGL------GKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNEFREKYRKKVDVLLIDDV 203 (440)
T ss_pred CCeEEEEcCCCC------cHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHhcccHHHHHHHHHhcCCEEEEech
Confidence 345889999998 44455555555432211 0111 1111111 1233333334568999999
Q ss_pred CcH---HHH-HHHhccCCC-CCCCCeEEEEcC-Chhh--------hhhccccceEecCCCCHHHHHHHHHHHhcCC--CC
Q 047161 216 VHI---RQL-NRLAGKHSW-FGSGSRIIIPTR-DEHL--------LRTLRVDGVYKVEKLDDDEALELFNKRAFDG--QP 279 (720)
Q Consensus 216 ~~~---~~~-~~l~~~~~~-~~~gsrIivTTR-~~~v--------~~~~~~~~~~~l~~L~~~~s~~Lf~~~af~~--~~ 279 (720)
... ..+ +.+...+.. ...|..||+||. ...- ...+...-+.++++.+.+.-..++.+++-.. ..
T Consensus 204 ~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~~~~~~~~l 283 (440)
T PRK14088 204 QFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIARKMLEIEHGEL 283 (440)
T ss_pred hhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHHHHHHhcCCCC
Confidence 743 111 122222211 123557888874 3222 1222334578999999999999998887533 22
Q ss_pred CchHHHHHHHHHHHhCCC
Q 047161 280 SKDYVELIKRIVKYADGL 297 (720)
Q Consensus 280 ~~~~~~~~~~i~~~c~gl 297 (720)
+ .++...|++.+.|.
T Consensus 284 ~---~ev~~~Ia~~~~~~ 298 (440)
T PRK14088 284 P---EEVLNFVAENVDDN 298 (440)
T ss_pred C---HHHHHHHHhccccC
Confidence 2 24455666666654
No 178
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=79.20 E-value=36 Score=38.01 Aligned_cols=163 Identities=19% Similarity=0.241 Sum_probs=84.3
Q ss_pred CCCccccchhHHHHHHhhh---c-------cCCCeEEEEEecCCCccccchhcHHHHHHHHHHhhhhcccceecc-----
Q 047161 127 LDDLVEMNSRLKKLRLLLD---A-------ESRDVRMIGICGMGGVELSEKDGLIALQKQLLSKTLMEIDIEIRN----- 191 (720)
Q Consensus 127 ~~~~vG~~~~~~~i~~~L~---~-------~~~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~~~~~~~~----- 191 (720)
.++++|.+..++++.+++. . +..-.+=+-++|..|. +...+.+.+... ..........
T Consensus 54 ~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGt------GKT~la~alA~~-~~~~~~~i~~~~~~~ 126 (495)
T TIGR01241 54 FKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGT------GKTLLAKAVAGE-AGVPFFSISGSDFVE 126 (495)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCC------CHHHHHHHHHHH-cCCCeeeccHHHHHH
Confidence 4578898888777765443 1 1122234778999998 333444444433 1111111100
Q ss_pred --chhhHHHHHHH----HhcCCeEEEEecCCcHH------------H----HHHHhccCCCC--CCCCeEEEEcCChhh-
Q 047161 192 --DFDGIKMIKRE----LRRRNVLVVIDDAVHIR------------Q----LNRLAGKHSWF--GSGSRIIIPTRDEHL- 246 (720)
Q Consensus 192 --~~~~~~~l~~~----l~~kr~LlVLDdv~~~~------------~----~~~l~~~~~~~--~~gsrIivTTR~~~v- 246 (720)
.......++.. ......+|++||++... . ...+...++.. ..+-.||.||...+.
T Consensus 127 ~~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~~~~l 206 (495)
T TIGR01241 127 MFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRPDVL 206 (495)
T ss_pred HHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEecCChhhc
Confidence 00111223322 23566899999996531 1 22232222222 223456667765432
Q ss_pred ----hhhccccceEecCCCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHhCCCc
Q 047161 247 ----LRTLRVDGVYKVEKLDDDEALELFNKRAFDGQPSKDYVELIKRIVKYADGLP 298 (720)
Q Consensus 247 ----~~~~~~~~~~~l~~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~i~~~c~glP 298 (720)
.+....+..++++..+.++-.++|..+.-......+ .+ ...+++.+.|.-
T Consensus 207 d~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~-~~-l~~la~~t~G~s 260 (495)
T TIGR01241 207 DPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPD-VD-LKAVARRTPGFS 260 (495)
T ss_pred CHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcc-hh-HHHHHHhCCCCC
Confidence 222245678899999999999999877644321111 11 236667777643
No 179
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=78.71 E-value=19 Score=42.26 Aligned_cols=136 Identities=19% Similarity=0.219 Sum_probs=71.0
Q ss_pred CCccccchhHHHHHHhhhccCCCeEEEEEecCCCccccchhcHHHHHHHHHHhhhhcc------cceec-----------
Q 047161 128 DDLVEMNSRLKKLRLLLDAESRDVRMIGICGMGGVELSEKDGLIALQKQLLSKTLMEI------DIEIR----------- 190 (720)
Q Consensus 128 ~~~vG~~~~~~~i~~~L~~~~~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~~------~~~~~----------- 190 (720)
+.++||+.+++++.+.|..... .-+-++|..|++.+ .+.+.+...+.... .....
T Consensus 186 ~~liGR~~ei~~~i~iL~r~~~--~n~LLvGppGvGKT------~lae~la~~i~~~~vP~~l~~~~~~~l~~~~llaG~ 257 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRRRK--NNPLLVGESGVGKT------AIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGT 257 (758)
T ss_pred CcCcCCCHHHHHHHHHHhccCC--CCeEEECCCCCCHH------HHHHHHHHHHHhcCCCchhcCCeEEeccHHHHhccc
Confidence 4699999999999998865322 22347999998333 23333332221110 00000
Q ss_pred ----cchhhHHHHHHHH-hcCCeEEEEecCCcH----------HHHHHHhccCCCCCCC-CeEEEEcCChhhhhhc----
Q 047161 191 ----NDFDGIKMIKREL-RRRNVLVVIDDAVHI----------RQLNRLAGKHSWFGSG-SRIIIPTRDEHLLRTL---- 250 (720)
Q Consensus 191 ----~~~~~~~~l~~~l-~~kr~LlVLDdv~~~----------~~~~~l~~~~~~~~~g-srIivTTR~~~v~~~~---- 250 (720)
+.......+-+.+ +.+..+|++|++... .+...+..++- ..| =+||-+|......+..
T Consensus 258 ~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L--~~g~i~vIgATt~~E~~~~~~~D~ 335 (758)
T PRK11034 258 KYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLL--SSGKIRVIGSTTYQEFSNIFEKDR 335 (758)
T ss_pred chhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHH--hCCCeEEEecCChHHHHHHhhccH
Confidence 1111122222233 346789999999743 11222222222 233 2345455433321111
Q ss_pred ----cccceEecCCCCHHHHHHHHHHHh
Q 047161 251 ----RVDGVYKVEKLDDDEALELFNKRA 274 (720)
Q Consensus 251 ----~~~~~~~l~~L~~~~s~~Lf~~~a 274 (720)
.. ..+++++.+.++..+++....
T Consensus 336 AL~rRF-q~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 336 ALARRF-QKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred HHHhhC-cEEEeCCCCHHHHHHHHHHHH
Confidence 22 378999999999999987643
No 180
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=78.06 E-value=87 Score=35.54 Aligned_cols=167 Identities=13% Similarity=0.116 Sum_probs=94.7
Q ss_pred CCCccccchhHHHHHHhhhccCCCeEEEEEecCCCccccchhcHHHHHHHHHHhhhhc--------------------cc
Q 047161 127 LDDLVEMNSRLKKLRLLLDAESRDVRMIGICGMGGVELSEKDGLIALQKQLLSKTLME--------------------ID 186 (720)
Q Consensus 127 ~~~~vG~~~~~~~i~~~L~~~~~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~--------------------~~ 186 (720)
..++||-+..++.+...+..+ .-...+-++|..|++. ..+.+.+...+... ..
T Consensus 15 f~diiGqe~iv~~L~~~i~~~-~i~hayLf~Gp~G~GK------Tt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~i~~~~~ 87 (563)
T PRK06647 15 FNSLEGQDFVVETLKHSIESN-KIANAYIFSGPRGVGK------TSSARAFARCLNCVNGPTPMPCGECSSCKSIDNDNS 87 (563)
T ss_pred HHHccCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCH------HHHHHHHHHhhccccCCCCCCCccchHHHHHHcCCC
Confidence 367899888888888888532 2233567899999833 33333333332211 00
Q ss_pred ce---eccc-hhhHHHHHHHH--------hcCCeEEEEecCCcH--HHHHHHhccCCCCCCCCeEEEEcCC-hhhhhhcc
Q 047161 187 IE---IRND-FDGIKMIKREL--------RRRNVLVVIDDAVHI--RQLNRLAGKHSWFGSGSRIIIPTRD-EHLLRTLR 251 (720)
Q Consensus 187 ~~---~~~~-~~~~~~l~~~l--------~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIivTTR~-~~v~~~~~ 251 (720)
.+ .... ....+.+++.. .+++=++|+|++... ..++.|...+....+...+|.+|.+ ..+.....
T Consensus 88 ~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~~tI~ 167 (563)
T PRK06647 88 LDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLPATIK 167 (563)
T ss_pred CCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhHHHHH
Confidence 11 1101 12233333322 356668889998754 4577777777655556666665543 44433322
Q ss_pred c-cceEecCCCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHhCCCchHH
Q 047161 252 V-DGVYKVEKLDDDEALELFNKRAFDGQPSKDYVELIKRIVKYADGLPFAL 301 (720)
Q Consensus 252 ~-~~~~~l~~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~i~~~c~glPLai 301 (720)
. -..++.++++.++-.+.+.+.+......- -.+....+++.++|-+-.+
T Consensus 168 SRc~~~~f~~l~~~el~~~L~~i~~~egi~i-d~eAl~lLa~~s~GdlR~a 217 (563)
T PRK06647 168 SRCQHFNFRLLSLEKIYNMLKKVCLEDQIKY-EDEALKWIAYKSTGSVRDA 217 (563)
T ss_pred HhceEEEecCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHH
Confidence 1 23688999999988888877664331111 1234556778888877543
No 181
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=77.72 E-value=40 Score=32.95 Aligned_cols=166 Identities=17% Similarity=0.162 Sum_probs=86.1
Q ss_pred CCCCccccchhHHHHHHhhh---ccCCCeEEEEEecCCCccccchhcHHHHHHHHHHhhhhcccc-----eeccchhhHH
Q 047161 126 ILDDLVEMNSRLKKLRLLLD---AESRDVRMIGICGMGGVELSEKDGLIALQKQLLSKTLMEIDI-----EIRNDFDGIK 197 (720)
Q Consensus 126 ~~~~~vG~~~~~~~i~~~L~---~~~~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~~~~-----~~~~~~~~~~ 197 (720)
..+++||-+.-++.+.-++. ...+.+.-+-.||.+|++ ...+..-|... .+..-. ......++..
T Consensus 22 ~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~G------KTTLA~IIA~e-~~~~~~~~sg~~i~k~~dl~~ 94 (233)
T PF05496_consen 22 SLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLG------KTTLARIIANE-LGVNFKITSGPAIEKAGDLAA 94 (233)
T ss_dssp SCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSS------HHHHHHHHHHH-CT--EEEEECCC--SCHHHHH
T ss_pred CHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccc------hhHHHHHHHhc-cCCCeEeccchhhhhHHHHHH
Confidence 34789999888887765553 234567788899999994 34444444444 222111 1112223333
Q ss_pred HHHHHHhcCCeEEEEecCCcH--HHHHHHhccCCC--------CCCC-----------CeEEEEcCChhhhhhccc--cc
Q 047161 198 MIKRELRRRNVLVVIDDAVHI--RQLNRLAGKHSW--------FGSG-----------SRIIIPTRDEHLLRTLRV--DG 254 (720)
Q Consensus 198 ~l~~~l~~kr~LlVLDdv~~~--~~~~~l~~~~~~--------~~~g-----------srIivTTR~~~v~~~~~~--~~ 254 (720)
.+. .++ ++-+|.+|.+... .+-+.|.....+ .+++ +-|=.|||...+..-+.. .-
T Consensus 95 il~-~l~-~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligATTr~g~ls~pLrdRFgi 172 (233)
T PF05496_consen 95 ILT-NLK-EGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGATTRAGLLSSPLRDRFGI 172 (233)
T ss_dssp HHH-T---TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEEESSGCCTSHCCCTTSSE
T ss_pred HHH-hcC-CCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEeeeeccccccchhHHhhcce
Confidence 322 233 4557778999754 333333322211 1222 345578887666544432 23
Q ss_pred eEecCCCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHhCCCchHH
Q 047161 255 VYKVEKLDDDEALELFNKRAFDGQPSKDYVELIKRIVKYADGLPFAL 301 (720)
Q Consensus 255 ~~~l~~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~i~~~c~glPLai 301 (720)
..+++.-+.+|-.++..+.|-.-.. .--++.+.+|+++|.|-|--+
T Consensus 173 ~~~l~~Y~~~el~~Iv~r~a~~l~i-~i~~~~~~~Ia~rsrGtPRiA 218 (233)
T PF05496_consen 173 VLRLEFYSEEELAKIVKRSARILNI-EIDEDAAEEIARRSRGTPRIA 218 (233)
T ss_dssp EEE----THHHHHHHHHHCCHCTT--EE-HHHHHHHHHCTTTSHHHH
T ss_pred ecchhcCCHHHHHHHHHHHHHHhCC-CcCHHHHHHHHHhcCCChHHH
Confidence 5689999999999998876643211 112466889999999999543
No 182
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=77.61 E-value=1.1e+02 Score=34.81 Aligned_cols=163 Identities=15% Similarity=0.169 Sum_probs=87.2
Q ss_pred CCCccccchhHHHHHHhhhccCCCe-EEEEEecCCCccccchhcHHHHHHHHHHhhhh--------------------cc
Q 047161 127 LDDLVEMNSRLKKLRLLLDAESRDV-RMIGICGMGGVELSEKDGLIALQKQLLSKTLM--------------------EI 185 (720)
Q Consensus 127 ~~~~vG~~~~~~~i~~~L~~~~~~~-~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~--------------------~~ 185 (720)
.+++||-+..++.+.+.+.. +.+ ..+-++|..|++.+. +.+.+...+.. ..
T Consensus 15 f~~iiGq~~v~~~L~~~i~~--~~~~hayLf~Gp~G~GKtt------~A~~lak~l~c~~~~~~~~c~~c~~c~~i~~g~ 86 (576)
T PRK14965 15 FSDLTGQEHVSRTLQNAIDT--GRVAHAFLFTGARGVGKTS------TARILAKALNCEQGLTAEPCNVCPPCVEITEGR 86 (576)
T ss_pred HHHccCcHHHHHHHHHHHHc--CCCCeEEEEECCCCCCHHH------HHHHHHHhhcCCCCCCCCCCCccHHHHHHhcCC
Confidence 36799999888888888753 333 345689999983322 22222222111 01
Q ss_pred cce---ec-cchhh---HHHHHHHHh-----cCCeEEEEecCCcH--HHHHHHhccCCCCCCCCeEEE-EcCChhhhhhc
Q 047161 186 DIE---IR-NDFDG---IKMIKRELR-----RRNVLVVIDDAVHI--RQLNRLAGKHSWFGSGSRIII-PTRDEHLLRTL 250 (720)
Q Consensus 186 ~~~---~~-~~~~~---~~~l~~~l~-----~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIiv-TTR~~~v~~~~ 250 (720)
..+ .. ..... ++.+.+.++ +++=++|+|+|... ...+.|...+........+|+ ||....+....
T Consensus 87 ~~d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~~tI 166 (576)
T PRK14965 87 SVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPITI 166 (576)
T ss_pred CCCeeeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhhHHH
Confidence 111 11 00112 223333332 34457889998754 446667666654445666665 44445554433
Q ss_pred cc-cceEecCCCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHhCCCc
Q 047161 251 RV-DGVYKVEKLDDDEALELFNKRAFDGQPSKDYVELIKRIVKYADGLP 298 (720)
Q Consensus 251 ~~-~~~~~l~~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~i~~~c~glP 298 (720)
.. ...++++.++.++....+...+-.....-+ .+....+++.++|-.
T Consensus 167 ~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~i~-~~al~~la~~a~G~l 214 (576)
T PRK14965 167 LSRCQRFDFRRIPLQKIVDRLRYIADQEGISIS-DAALALVARKGDGSM 214 (576)
T ss_pred HHhhhhhhcCCCCHHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHcCCCH
Confidence 21 236788899988887766654322211111 233456777777754
No 183
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=77.58 E-value=3.3 Score=39.00 Aligned_cols=34 Identities=32% Similarity=0.447 Sum_probs=21.4
Q ss_pred ccccchhHHHHHHhhh-ccCCCeEEEEEecCCCcc
Q 047161 130 LVEMNSRLKKLRLLLD-AESRDVRMIGICGMGGVE 163 (720)
Q Consensus 130 ~vG~~~~~~~i~~~L~-~~~~~~~vi~I~G~gGi~ 163 (720)
+|||+++.+++...+. ......+.+-|+|..|++
T Consensus 2 fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~G 36 (185)
T PF13191_consen 2 FVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSG 36 (185)
T ss_dssp -TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSS
T ss_pred CCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCC
Confidence 7999999999999994 334557899999999993
No 184
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=77.41 E-value=1.7 Score=26.11 Aligned_cols=18 Identities=33% Similarity=0.490 Sum_probs=8.2
Q ss_pred CCCcEEeccCCCCCcccCC
Q 047161 496 TGLVFLNLNDCKILVRLPS 514 (720)
Q Consensus 496 ~~L~~L~Ls~n~~~~~lp~ 514 (720)
++|++|+|++|. +..+|.
T Consensus 2 ~~L~~L~L~~N~-l~~lp~ 19 (26)
T smart00370 2 PNLRELDLSNNQ-LSSLPP 19 (26)
T ss_pred CCCCEEECCCCc-CCcCCH
Confidence 344555555554 333443
No 185
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=77.41 E-value=1.7 Score=26.11 Aligned_cols=18 Identities=33% Similarity=0.490 Sum_probs=8.2
Q ss_pred CCCcEEeccCCCCCcccCC
Q 047161 496 TGLVFLNLNDCKILVRLPS 514 (720)
Q Consensus 496 ~~L~~L~Ls~n~~~~~lp~ 514 (720)
++|++|+|++|. +..+|.
T Consensus 2 ~~L~~L~L~~N~-l~~lp~ 19 (26)
T smart00369 2 PNLRELDLSNNQ-LSSLPP 19 (26)
T ss_pred CCCCEEECCCCc-CCcCCH
Confidence 344555555554 333443
No 186
>PRK12377 putative replication protein; Provisional
Probab=77.20 E-value=76 Score=31.69 Aligned_cols=60 Identities=15% Similarity=0.146 Sum_probs=32.0
Q ss_pred eEEEEEecCCCccccchhcHHHHHHHHHHhhhhc-ccceeccchhhHHHHHHHHh------------cCCeEEEEecCC
Q 047161 151 VRMIGICGMGGVELSEKDGLIALQKQLLSKTLME-IDIEIRNDFDGIKMIKRELR------------RRNVLVVIDDAV 216 (720)
Q Consensus 151 ~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~-~~~~~~~~~~~~~~l~~~l~------------~kr~LlVLDdv~ 216 (720)
...+.++|..|. +..++...|...+... ...-..+..++...++.... .+-=||||||+.
T Consensus 101 ~~~l~l~G~~Gt------GKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~l~~~dLLiIDDlg 173 (248)
T PRK12377 101 CTNFVFSGKPGT------GKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHESYDNGQSGEKFLQELCKVDLLVLDEIG 173 (248)
T ss_pred CCeEEEECCCCC------CHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHHHHHhccchHHHHHHHhcCCCEEEEcCCC
Confidence 356789999998 4445555555553321 11222233344444433221 244589999993
No 187
>CHL00181 cbbX CbbX; Provisional
Probab=75.27 E-value=1e+02 Score=31.56 Aligned_cols=70 Identities=11% Similarity=0.112 Sum_probs=45.2
Q ss_pred CeEEEEecCCcH-----------HHHHHHhccCCCCCCCCeEEEEcCChhhhhhc--------cccceEecCCCCHHHHH
Q 047161 207 NVLVVIDDAVHI-----------RQLNRLAGKHSWFGSGSRIIIPTRDEHLLRTL--------RVDGVYKVEKLDDDEAL 267 (720)
Q Consensus 207 r~LlVLDdv~~~-----------~~~~~l~~~~~~~~~gsrIivTTR~~~v~~~~--------~~~~~~~l~~L~~~~s~ 267 (720)
.-.|++|++... +..+.|.........+-+||.++....+.... .....++.++++.+|-.
T Consensus 123 ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~ 202 (287)
T CHL00181 123 GGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELL 202 (287)
T ss_pred CCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHH
Confidence 458899999642 33455555554444556778887654442211 23457899999999999
Q ss_pred HHHHHHhcC
Q 047161 268 ELFNKRAFD 276 (720)
Q Consensus 268 ~Lf~~~af~ 276 (720)
+++.+.+-+
T Consensus 203 ~I~~~~l~~ 211 (287)
T CHL00181 203 QIAKIMLEE 211 (287)
T ss_pred HHHHHHHHH
Confidence 998877643
No 188
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=74.81 E-value=1.1e+02 Score=34.87 Aligned_cols=166 Identities=13% Similarity=0.121 Sum_probs=90.2
Q ss_pred CCCccccchhHHHHHHhhhccCCCeEEEEEecCCCccccchhcHHHHHHHHHHhhhh--------------------ccc
Q 047161 127 LDDLVEMNSRLKKLRLLLDAESRDVRMIGICGMGGVELSEKDGLIALQKQLLSKTLM--------------------EID 186 (720)
Q Consensus 127 ~~~~vG~~~~~~~i~~~L~~~~~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~--------------------~~~ 186 (720)
.+++||.+..++.+.+.+..+. -...+-++|..|.+.+ .+.+.+...+.. ...
T Consensus 15 f~~viGq~~v~~~L~~~i~~~~-~~hayLf~Gp~GtGKT------t~Ak~lAkal~c~~~~~~~pC~~C~~C~~i~~g~~ 87 (559)
T PRK05563 15 FEDVVGQEHITKTLKNAIKQGK-ISHAYLFSGPRGTGKT------SAAKIFAKAVNCLNPPDGEPCNECEICKAITNGSL 87 (559)
T ss_pred HHhccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHH------HHHHHHHHHhcCCCCCCCCCCCccHHHHHHhcCCC
Confidence 3689999998999988885432 2334557999998332 222222222110 001
Q ss_pred cee---c-cchhhHH---HHHHHH-----hcCCeEEEEecCCcH--HHHHHHhccCCCCCCCCeEEE-EcCChhhhhhcc
Q 047161 187 IEI---R-NDFDGIK---MIKREL-----RRRNVLVVIDDAVHI--RQLNRLAGKHSWFGSGSRIII-PTRDEHLLRTLR 251 (720)
Q Consensus 187 ~~~---~-~~~~~~~---~l~~~l-----~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIiv-TTR~~~v~~~~~ 251 (720)
.+. . ......+ .+++.. .+++-++|+|++... ..+..|...+........+|+ ||.-..+.....
T Consensus 88 ~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~~tI~ 167 (559)
T PRK05563 88 MDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIPATIL 167 (559)
T ss_pred CCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCcHHHH
Confidence 111 0 0012233 333332 345667889999844 557777766654434555554 444444433321
Q ss_pred -ccceEecCCCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHhCCCchH
Q 047161 252 -VDGVYKVEKLDDDEALELFNKRAFDGQPSKDYVELIKRIVKYADGLPFA 300 (720)
Q Consensus 252 -~~~~~~l~~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~i~~~c~glPLa 300 (720)
-...++..+++.++..+.+...+-.....-+ .+....+++.++|-+..
T Consensus 168 SRc~~~~f~~~~~~ei~~~L~~i~~~egi~i~-~~al~~ia~~s~G~~R~ 216 (559)
T PRK05563 168 SRCQRFDFKRISVEDIVERLKYILDKEGIEYE-DEALRLIARAAEGGMRD 216 (559)
T ss_pred hHheEEecCCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHcCCCHHH
Confidence 1236788899998888877765533211111 23455677788876643
No 189
>CHL00195 ycf46 Ycf46; Provisional
Probab=74.33 E-value=1.5e+02 Score=33.00 Aligned_cols=144 Identities=13% Similarity=0.060 Sum_probs=76.5
Q ss_pred CCCccccchhHHHHHHhhh---c-----cCCCeEEEEEecCCCccccchhcHHHHHHHHHHhhhhccccee-------cc
Q 047161 127 LDDLVEMNSRLKKLRLLLD---A-----ESRDVRMIGICGMGGVELSEKDGLIALQKQLLSKTLMEIDIEI-------RN 191 (720)
Q Consensus 127 ~~~~vG~~~~~~~i~~~L~---~-----~~~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~~~~~~-------~~ 191 (720)
.+++.|++.-++.+.+... . +-...+-|-++|..|.+. ..+.+.+... .+..-... .-
T Consensus 227 ~~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGK------TllAkaiA~e-~~~~~~~l~~~~l~~~~ 299 (489)
T CHL00195 227 ISDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGK------SLTAKAIAND-WQLPLLRLDVGKLFGGI 299 (489)
T ss_pred HHHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcH------HHHHHHHHHH-hCCCEEEEEhHHhcccc
Confidence 3568888877766654321 0 112334577999999833 3333444443 21110110 00
Q ss_pred chhhHHHHHHHH----hcCCeEEEEecCCcHHH--------------HHHHhccCCCCCCCCeEEEEcCChhh-----hh
Q 047161 192 DFDGIKMIKREL----RRRNVLVVIDDAVHIRQ--------------LNRLAGKHSWFGSGSRIIIPTRDEHL-----LR 248 (720)
Q Consensus 192 ~~~~~~~l~~~l----~~kr~LlVLDdv~~~~~--------------~~~l~~~~~~~~~gsrIivTTR~~~v-----~~ 248 (720)
..+....+++.+ ...+++|++|+++.... ...+...+.....+--||.||...+- .+
T Consensus 300 vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTTN~~~~Ld~allR 379 (489)
T CHL00195 300 VGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATANNIDLLPLEILR 379 (489)
T ss_pred cChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEecCChhhCCHHHhC
Confidence 011122333333 35789999999974311 11122212212233346667765542 22
Q ss_pred hccccceEecCCCCHHHHHHHHHHHhcCC
Q 047161 249 TLRVDGVYKVEKLDDDEALELFNKRAFDG 277 (720)
Q Consensus 249 ~~~~~~~~~l~~L~~~~s~~Lf~~~af~~ 277 (720)
.-..+..+.+..-+.++-.++|..+.-+.
T Consensus 380 ~GRFD~~i~v~lP~~~eR~~Il~~~l~~~ 408 (489)
T CHL00195 380 KGRFDEIFFLDLPSLEEREKIFKIHLQKF 408 (489)
T ss_pred CCcCCeEEEeCCcCHHHHHHHHHHHHhhc
Confidence 23567789999999999999998877543
No 190
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=74.25 E-value=34 Score=40.93 Aligned_cols=151 Identities=16% Similarity=0.194 Sum_probs=79.6
Q ss_pred HHHHHHHhhhhccCCCccCCCCCccccchhHHHHHHhhhccCCCeEEEEEecCCCccccchhcHHHHHHHHHHhhhhccc
Q 047161 107 FIQEIVKEISRKKGPRTLGILDDLVEMNSRLKKLRLLLDAESRDVRMIGICGMGGVELSEKDGLIALQKQLLSKTLMEID 186 (720)
Q Consensus 107 ~i~~i~~~i~~~~~~~~~~~~~~~vG~~~~~~~i~~~L~~~~~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~~~ 186 (720)
.+++...++..+..+. ..+.+|||+.++.++++.|.... ..-+-++|.+|++ ...+.+.+...+....-
T Consensus 169 ~l~~~~~~L~~~~r~~---~ld~~iGr~~ei~~~i~~l~r~~--~~n~lLvG~pGvG------KTal~~~La~~i~~~~v 237 (852)
T TIGR03345 169 ALDQYTTDLTAQAREG---KIDPVLGRDDEIRQMIDILLRRR--QNNPILTGEAGVG------KTAVVEGLALRIAAGDV 237 (852)
T ss_pred hHHHHhhhHHHHhcCC---CCCcccCCHHHHHHHHHHHhcCC--cCceeEECCCCCC------HHHHHHHHHHHHhhCCC
Confidence 3444444444333332 33579999999999998885432 2233489999983 33344444433211100
Q ss_pred ------cee------------ccchhhHHHHHHHH---h--cCCeEEEEecCCcHH-------HHH---HHhccCCCCCC
Q 047161 187 ------IEI------------RNDFDGIKMIKREL---R--RRNVLVVIDDAVHIR-------QLN---RLAGKHSWFGS 233 (720)
Q Consensus 187 ------~~~------------~~~~~~~~~l~~~l---~--~kr~LlVLDdv~~~~-------~~~---~l~~~~~~~~~ 233 (720)
... ....+....+++.+ + +++.+|++|++.... +-+ -|...+ ..
T Consensus 238 ~~~l~~~~i~~l~l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l---~~ 314 (852)
T TIGR03345 238 PPALRNVRLLSLDLGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPAL---AR 314 (852)
T ss_pred CccccCCeEEEeehhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHh---hC
Confidence 000 00111112333333 2 468999999986542 111 233322 23
Q ss_pred C-CeEEEEcCChhhhhhc--------cccceEecCCCCHHHHHHHHHH
Q 047161 234 G-SRIIIPTRDEHLLRTL--------RVDGVYKVEKLDDDEALELFNK 272 (720)
Q Consensus 234 g-srIivTTR~~~v~~~~--------~~~~~~~l~~L~~~~s~~Lf~~ 272 (720)
| =++|-||.....-... .. .++.+++++.++..+++..
T Consensus 315 G~l~~IgaTT~~e~~~~~~~d~AL~rRf-~~i~v~eps~~~~~~iL~~ 361 (852)
T TIGR03345 315 GELRTIAATTWAEYKKYFEKDPALTRRF-QVVKVEEPDEETAIRMLRG 361 (852)
T ss_pred CCeEEEEecCHHHHhhhhhccHHHHHhC-eEEEeCCCCHHHHHHHHHH
Confidence 3 3566666543321111 12 3789999999999999754
No 191
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=73.94 E-value=1e+02 Score=33.16 Aligned_cols=182 Identities=20% Similarity=0.253 Sum_probs=92.6
Q ss_pred CeEEEEEecCCCccccchhcHHHHHHHHHHhhhhccc-cee--ccchh------------hHHHHHHHHhcCCeEEEEec
Q 047161 150 DVRMIGICGMGGVELSEKDGLIALQKQLLSKTLMEID-IEI--RNDFD------------GIKMIKRELRRRNVLVVIDD 214 (720)
Q Consensus 150 ~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~~~-~~~--~~~~~------------~~~~l~~~l~~kr~LlVLDd 214 (720)
....+-|||.-|. |..++.+.+-..+..... ... .+... ..++.++.. .-=++++||
T Consensus 112 ~~nplfi~G~~Gl------GKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~~v~a~~~~~~~~Fk~~y--~~dlllIDD 183 (408)
T COG0593 112 AYNPLFIYGGVGL------GKTHLLQAIGNEALANGPNARVVYLTSEDFTNDFVKALRDNEMEKFKEKY--SLDLLLIDD 183 (408)
T ss_pred cCCcEEEECCCCC------CHHHHHHHHHHHHHhhCCCceEEeccHHHHHHHHHHHHHhhhHHHHHHhh--ccCeeeech
Confidence 4667889999998 555666666555332211 011 11111 122333333 334788999
Q ss_pred CCcHH---HH-HHHhccCCC-CCCCCeEEEEcCC---------hhhhhhccccceEecCCCCHHHHHHHHHHHhcCC--C
Q 047161 215 AVHIR---QL-NRLAGKHSW-FGSGSRIIIPTRD---------EHLLRTLRVDGVYKVEKLDDDEALELFNKRAFDG--Q 278 (720)
Q Consensus 215 v~~~~---~~-~~l~~~~~~-~~~gsrIivTTR~---------~~v~~~~~~~~~~~l~~L~~~~s~~Lf~~~af~~--~ 278 (720)
++-.. .| +.+...+.. ...|..||+|++. .++...++..-++++++.+.+.......++|-.. .
T Consensus 184 iq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kka~~~~~~ 263 (408)
T COG0593 184 IQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILRKKAEDRGIE 263 (408)
T ss_pred HhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHHHHHHHhcCCC
Confidence 86421 12 222222221 1234589999853 3444445555689999999999999999977544 3
Q ss_pred CCc-hHHHHHHHHHHHhCCCchHHHHhhhh-c-cCC--CHHHHHHHHhhhhc----CCchhHHHHHHhhh
Q 047161 279 PSK-DYVELIKRIVKYADGLPFALETLGSV-L-FGR--SVDGWRSTLERLNK----HSADEILDVLEISF 339 (720)
Q Consensus 279 ~~~-~~~~~~~~i~~~c~glPLai~~~g~~-l-~~k--~~~~W~~~l~~l~~----~~~~~il~~L~lSy 339 (720)
.+. -..-++.++-.-..-+.-|+..+... + .++ +...=+++++.+.. ...++|+++.--.|
T Consensus 264 i~~ev~~~la~~~~~nvReLegaL~~l~~~a~~~~~~iTi~~v~e~L~~~~~~~~~itie~I~~~Va~~y 333 (408)
T COG0593 264 IPDEVLEFLAKRLDRNVRELEGALNRLDAFALFTKRAITIDLVKEILKDLLRAGEKITIEDIQKIVAEYY 333 (408)
T ss_pred CCHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcCccCcHHHHHHHHHHhhcccccCCHHHHHHHHHHHh
Confidence 333 33334444333333333344322211 1 121 44445555553322 34455555544333
No 192
>PF14516 AAA_35: AAA-like domain
Probab=73.10 E-value=70 Score=33.53 Aligned_cols=54 Identities=13% Similarity=0.319 Sum_probs=42.3
Q ss_pred ccceEecCCCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHhCCCchHHHHhhhhccC
Q 047161 252 VDGVYKVEKLDDDEALELFNKRAFDGQPSKDYVELIKRIVKYADGLPFALETLGSVLFG 310 (720)
Q Consensus 252 ~~~~~~l~~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~i~~~c~glPLai~~~g~~l~~ 310 (720)
+...+++++.+.+|...|..++-..-. ....+++...+||+|.-+..++..+..
T Consensus 192 Ig~~i~L~~Ft~~ev~~L~~~~~~~~~-----~~~~~~l~~~tgGhP~Lv~~~~~~l~~ 245 (331)
T PF14516_consen 192 IGQPIELPDFTPEEVQELAQRYGLEFS-----QEQLEQLMDWTGGHPYLVQKACYLLVE 245 (331)
T ss_pred cccceeCCCCCHHHHHHHHHhhhccCC-----HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 345789999999999999988643211 122788999999999999999988865
No 193
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=72.77 E-value=83 Score=36.80 Aligned_cols=174 Identities=17% Similarity=0.134 Sum_probs=97.4
Q ss_pred CCCccccchhHHHHHHhhhccCCCeEEEEEecCCCcc-----------------------ccchhcHHHHHHHHHHhhhh
Q 047161 127 LDDLVEMNSRLKKLRLLLDAESRDVRMIGICGMGGVE-----------------------LSEKDGLIALQKQLLSKTLM 183 (720)
Q Consensus 127 ~~~~vG~~~~~~~i~~~L~~~~~~~~vi~I~G~gGi~-----------------------vs~~~~~~~~~~~il~~~~~ 183 (720)
....|-|..-.+ .|. ...+.|.+-|.-++|-+ -..+.+..++...++..+-.
T Consensus 18 ~~~~v~R~rL~~----~L~-~~~~~RL~li~APAGfGKttl~aq~~~~~~~~~~v~Wlslde~dndp~rF~~yLi~al~~ 92 (894)
T COG2909 18 PDNYVVRPRLLD----RLR-RANDYRLILISAPAGFGKTTLLAQWRELAADGAAVAWLSLDESDNDPARFLSYLIAALQQ 92 (894)
T ss_pred cccccccHHHHH----HHh-cCCCceEEEEeCCCCCcHHHHHHHHHHhcCcccceeEeecCCccCCHHHHHHHHHHHHHH
Confidence 344555544333 332 23578888888888871 12234566666666666421
Q ss_pred cccce------------eccchhhHHHHHHHHh--cCCeEEEEecCC---cHHHHHHHhccCCCCCCCCeEEEEcCChhh
Q 047161 184 EIDIE------------IRNDFDGIKMIKRELR--RRNVLVVIDDAV---HIRQLNRLAGKHSWFGSGSRIIIPTRDEHL 246 (720)
Q Consensus 184 ~~~~~------------~~~~~~~~~~l~~~l~--~kr~LlVLDdv~---~~~~~~~l~~~~~~~~~gsrIivTTR~~~v 246 (720)
-.... ..+.....+.+...+. .+...+||||.. +..--+.+..-+....++=..|||||..--
T Consensus 93 ~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP~ 172 (894)
T COG2909 93 ATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRPQ 172 (894)
T ss_pred hCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCCC
Confidence 11100 0122223333444443 468899999964 332233333333444478889999997632
Q ss_pred ---hhhccccceEecC----CCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHhCCCchHHHHhhhhcc
Q 047161 247 ---LRTLRVDGVYKVE----KLDDDEALELFNKRAFDGQPSKDYVELIKRIVKYADGLPFALETLGSVLF 309 (720)
Q Consensus 247 ---~~~~~~~~~~~l~----~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~i~~~c~glPLai~~~g~~l~ 309 (720)
++.---+...++. .++.+|+-++|.......-+ +.-.+.+.+...|.+-|+..++=.++
T Consensus 173 l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l~Ld----~~~~~~L~~~teGW~~al~L~aLa~~ 238 (894)
T COG2909 173 LGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGSLPLD----AADLKALYDRTEGWAAALQLIALALR 238 (894)
T ss_pred CcccceeehhhHHhcChHhhcCChHHHHHHHHHcCCCCCC----hHHHHHHHhhcccHHHHHHHHHHHcc
Confidence 2211112233333 58899999999876422211 22356778888999988888777776
No 194
>CHL00095 clpC Clp protease ATP binding subunit
Probab=71.46 E-value=33 Score=41.04 Aligned_cols=134 Identities=17% Similarity=0.194 Sum_probs=69.9
Q ss_pred CCccccchhHHHHHHhhhccCCCeEEEEEecCCCccccchhcHHHHHHHHHHhhhhcc------ccee--cc--------
Q 047161 128 DDLVEMNSRLKKLRLLLDAESRDVRMIGICGMGGVELSEKDGLIALQKQLLSKTLMEI------DIEI--RN-------- 191 (720)
Q Consensus 128 ~~~vG~~~~~~~i~~~L~~~~~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~~------~~~~--~~-------- 191 (720)
+.++||+++++++.+.|...... -+-++|.+|++.+ .+.+.+...+.... .... .+
T Consensus 179 ~~~igr~~ei~~~~~~L~r~~~~--n~lL~G~pGvGKT------al~~~la~~i~~~~vp~~l~~~~i~~l~~~~l~ag~ 250 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRRTKN--NPILIGEPGVGKT------AIAEGLAQRIVNRDVPDILEDKLVITLDIGLLLAGT 250 (821)
T ss_pred CCCCCcHHHHHHHHHHHcccccC--CeEEECCCCCCHH------HHHHHHHHHHHhCCCChhhcCCeEEEeeHHHHhccC
Confidence 46899999999999999643222 2358999999433 33333333321100 0000 00
Q ss_pred --chhhHHHHHHHH----hcCCeEEEEecCCcHH----------HHHHHhccCCCCCCC-CeEEEEcCChhhhhhc----
Q 047161 192 --DFDGIKMIKREL----RRRNVLVVIDDAVHIR----------QLNRLAGKHSWFGSG-SRIIIPTRDEHLLRTL---- 250 (720)
Q Consensus 192 --~~~~~~~l~~~l----~~kr~LlVLDdv~~~~----------~~~~l~~~~~~~~~g-srIivTTR~~~v~~~~---- 250 (720)
..+..+++++.+ ..++.+|++|++.... .-+-|...+ ..| =++|.+|.........
T Consensus 251 ~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l---~rg~l~~IgaTt~~ey~~~ie~D~ 327 (821)
T CHL00095 251 KYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPAL---ARGELQCIGATTLDEYRKHIEKDP 327 (821)
T ss_pred CCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHH---hCCCcEEEEeCCHHHHHHHHhcCH
Confidence 011122333333 3568999999985321 111222222 122 2455555544432211
Q ss_pred ---cccceEecCCCCHHHHHHHHHH
Q 047161 251 ---RVDGVYKVEKLDDDEALELFNK 272 (720)
Q Consensus 251 ---~~~~~~~l~~L~~~~s~~Lf~~ 272 (720)
.--.++.++..+.++...++..
T Consensus 328 aL~rRf~~I~v~ep~~~e~~aILr~ 352 (821)
T CHL00095 328 ALERRFQPVYVGEPSVEETIEILFG 352 (821)
T ss_pred HHHhcceEEecCCCCHHHHHHHHHH
Confidence 1123678888999998888764
No 195
>PRK08181 transposase; Validated
Probab=71.44 E-value=11 Score=38.11 Aligned_cols=12 Identities=17% Similarity=0.077 Sum_probs=9.4
Q ss_pred EEEEEecCCCcc
Q 047161 152 RMIGICGMGGVE 163 (720)
Q Consensus 152 ~vi~I~G~gGi~ 163 (720)
.-+-++|..|.+
T Consensus 107 ~nlll~Gp~GtG 118 (269)
T PRK08181 107 ANLLLFGPPGGG 118 (269)
T ss_pred ceEEEEecCCCc
Confidence 347899999983
No 196
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=69.77 E-value=49 Score=39.80 Aligned_cols=134 Identities=13% Similarity=0.185 Sum_probs=70.8
Q ss_pred CCccccchhHHHHHHhhhccCCCeEEEEEecCCCccccchhcHHHHHHHHHHhhhhcc------ccee-----c------
Q 047161 128 DDLVEMNSRLKKLRLLLDAESRDVRMIGICGMGGVELSEKDGLIALQKQLLSKTLMEI------DIEI-----R------ 190 (720)
Q Consensus 128 ~~~vG~~~~~~~i~~~L~~~~~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~~------~~~~-----~------ 190 (720)
+.+|||+.++.+++..|...... -+-++|..|++ ...+.+.+...+.... .... .
T Consensus 173 ~~~igr~~ei~~~~~~l~r~~~~--n~lL~G~pGvG------KT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~l~a~~ 244 (852)
T TIGR03346 173 DPVIGRDEEIRRTIQVLSRRTKN--NPVLIGEPGVG------KTAIVEGLAQRIVNGDVPESLKNKRLLALDMGALIAGA 244 (852)
T ss_pred CcCCCcHHHHHHHHHHHhcCCCC--ceEEEcCCCCC------HHHHHHHHHHHHhccCCchhhcCCeEEEeeHHHHhhcc
Confidence 56999999999999988643322 23479999983 3333334433321110 0000 0
Q ss_pred ----cchhhHHHHHHHHh--cCCeEEEEecCCcHH----------HHHHHhccCCCCCCCC-eEEEEcCChhhhhhc---
Q 047161 191 ----NDFDGIKMIKRELR--RRNVLVVIDDAVHIR----------QLNRLAGKHSWFGSGS-RIIIPTRDEHLLRTL--- 250 (720)
Q Consensus 191 ----~~~~~~~~l~~~l~--~kr~LlVLDdv~~~~----------~~~~l~~~~~~~~~gs-rIivTTR~~~v~~~~--- 250 (720)
........+-+.+. +++.+|++|++.... .-+.|+..+ ..|. ++|-+|.....-...
T Consensus 245 ~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l---~~g~i~~IgaTt~~e~r~~~~~d 321 (852)
T TIGR03346 245 KYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPAL---ARGELHCIGATTLDEYRKYIEKD 321 (852)
T ss_pred hhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhh---hcCceEEEEeCcHHHHHHHhhcC
Confidence 01111222222332 468999999987442 122232222 2332 445444433331111
Q ss_pred -----cccceEecCCCCHHHHHHHHHHH
Q 047161 251 -----RVDGVYKVEKLDDDEALELFNKR 273 (720)
Q Consensus 251 -----~~~~~~~l~~L~~~~s~~Lf~~~ 273 (720)
.. .++.+...+.++..+++...
T Consensus 322 ~al~rRf-~~i~v~~p~~~~~~~iL~~~ 348 (852)
T TIGR03346 322 AALERRF-QPVFVDEPTVEDTISILRGL 348 (852)
T ss_pred HHHHhcC-CEEEeCCCCHHHHHHHHHHH
Confidence 12 35789999999999988754
No 197
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=66.82 E-value=0.23 Score=47.65 Aligned_cols=83 Identities=12% Similarity=0.116 Sum_probs=61.6
Q ss_pred cceEeeCCCCchhHHhhhccCccccCCCCCCCCceeeecCCCCCCCCCCCCcccCccchhhhHHHHhccCCCCcEEeccC
Q 047161 426 KTLECNMCYRRIEQFWKGIKNLIRTPDFTGAPNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLND 505 (720)
Q Consensus 426 ~l~~L~l~~~~i~~l~~~~~~l~~~~~~~~l~~L~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~ 505 (720)
....++++.+++..+-. .|+.++.|..|+++.|. +..+|.. ++.+..++.+++..
T Consensus 43 r~tvld~~s~r~vn~~~---------n~s~~t~~~rl~~sknq-------~~~~~~d---------~~q~~e~~~~~~~~ 97 (326)
T KOG0473|consen 43 RVTVLDLSSNRLVNLGK---------NFSILTRLVRLDLSKNQ-------IKFLPKD---------AKQQRETVNAASHK 97 (326)
T ss_pred eeeeehhhhhHHHhhcc---------chHHHHHHHHHhccHhh-------HhhChhh---------HHHHHHHHHHHhhc
Confidence 44445666655544422 25667788889999877 5677777 77788888888887
Q ss_pred CCCCcccCCCCCCCCCCCEEeccCCCCCc
Q 047161 506 CKILVRLPSTINGWKSLRTVNLSRCSKLE 534 (720)
Q Consensus 506 n~~~~~lp~~i~~l~~L~~L~L~~~~~l~ 534 (720)
|. ....|.+++.++.++++++.++.+..
T Consensus 98 n~-~~~~p~s~~k~~~~k~~e~k~~~~~~ 125 (326)
T KOG0473|consen 98 NN-HSQQPKSQKKEPHPKKNEQKKTEFFR 125 (326)
T ss_pred cc-hhhCCccccccCCcchhhhccCcchH
Confidence 76 78899999999999999998876543
No 198
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=66.67 E-value=1.7e+02 Score=30.60 Aligned_cols=69 Identities=16% Similarity=0.201 Sum_probs=46.4
Q ss_pred cCCeEEEEecCCcH--HHHHHHhccCCCCCCCCeEEEEcCCh-hhhhhccc-cceEecCCCCHHHHHHHHHHH
Q 047161 205 RRNVLVVIDDAVHI--RQLNRLAGKHSWFGSGSRIIIPTRDE-HLLRTLRV-DGVYKVEKLDDDEALELFNKR 273 (720)
Q Consensus 205 ~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIivTTR~~-~v~~~~~~-~~~~~l~~L~~~~s~~Lf~~~ 273 (720)
+.+=.+|+|++... +..+.|...+.....++.+|++|.+. .+...... -..+++.+++.++..+.+...
T Consensus 109 ~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ll~TIrSRc~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 109 SNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQILPTILSRCQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred cCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhCcHHHHhhceeeeCCCCCHHHHHHHHHHc
Confidence 34446888998754 34667777776656788888777653 44443322 247899999999998877653
No 199
>PRK08116 hypothetical protein; Validated
Probab=66.56 E-value=20 Score=36.33 Aligned_cols=42 Identities=19% Similarity=0.250 Sum_probs=22.6
Q ss_pred HHHhcCCeEEEEecCCc--HHHH--HHHhccCCC-CCCCCeEEEEcCC
Q 047161 201 RELRRRNVLVVIDDAVH--IRQL--NRLAGKHSW-FGSGSRIIIPTRD 243 (720)
Q Consensus 201 ~~l~~kr~LlVLDdv~~--~~~~--~~l~~~~~~-~~~gsrIivTTR~ 243 (720)
+.+.+-. ||||||+.. ...| +.+...+.. ...|..+||||..
T Consensus 174 ~~l~~~d-lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~ 220 (268)
T PRK08116 174 RSLVNAD-LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNL 220 (268)
T ss_pred HHhcCCC-EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 3344444 799999942 2223 223322221 2356779999963
No 200
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=65.11 E-value=4.1 Score=24.64 Aligned_cols=16 Identities=44% Similarity=0.607 Sum_probs=12.2
Q ss_pred ccEEECCCCCCccccc
Q 047161 623 LKKLNLRRNNFVSLRG 638 (720)
Q Consensus 623 L~~L~Ls~n~l~~lp~ 638 (720)
|+.|++++|+++++|.
T Consensus 4 L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 4 LKELNVSNNQLTSLPE 19 (26)
T ss_pred cceeecCCCccccCcc
Confidence 4677888888888874
No 201
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=64.96 E-value=2e+02 Score=34.05 Aligned_cols=96 Identities=15% Similarity=0.153 Sum_probs=52.1
Q ss_pred CCCccccchhHHHHHHhhhcc------C-CCeEEEEEecCCCccccchhcHHHHHHHHHHhhhhccccee--cc------
Q 047161 127 LDDLVEMNSRLKKLRLLLDAE------S-RDVRMIGICGMGGVELSEKDGLIALQKQLLSKTLMEIDIEI--RN------ 191 (720)
Q Consensus 127 ~~~~vG~~~~~~~i~~~L~~~------~-~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~~~~~~--~~------ 191 (720)
...++|-+..++.+.+.+... . .-..++-++|..|++.+ .+.+.+...+ ...-... ..
T Consensus 453 ~~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT------~lA~~la~~l-~~~~~~~d~se~~~~~~ 525 (731)
T TIGR02639 453 KAKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKT------ELAKQLAEAL-GVHLERFDMSEYMEKHT 525 (731)
T ss_pred hcceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHH------HHHHHHHHHh-cCCeEEEeCchhhhccc
Confidence 356899988888887766421 1 12456789999999333 3333333321 1100000 00
Q ss_pred ------------chhhHHHHHHHHhcCCe-EEEEecCCcH--HHHHHHhccCC
Q 047161 192 ------------DFDGIKMIKRELRRRNV-LVVIDDAVHI--RQLNRLAGKHS 229 (720)
Q Consensus 192 ------------~~~~~~~l~~~l~~kr~-LlVLDdv~~~--~~~~~l~~~~~ 229 (720)
-.+....+.+.++.+.+ +++||+++.. +.++.|...+.
T Consensus 526 ~~~lig~~~gyvg~~~~~~l~~~~~~~p~~VvllDEieka~~~~~~~Ll~~ld 578 (731)
T TIGR02639 526 VSRLIGAPPGYVGFEQGGLLTEAVRKHPHCVLLLDEIEKAHPDIYNILLQVMD 578 (731)
T ss_pred HHHHhcCCCCCcccchhhHHHHHHHhCCCeEEEEechhhcCHHHHHHHHHhhc
Confidence 00112245566655555 8999999853 44666666554
No 202
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=64.15 E-value=13 Score=35.85 Aligned_cols=57 Identities=16% Similarity=0.135 Sum_probs=31.7
Q ss_pred CCCeEEEEEecCCCccccchhcHHHHHHHHHHhhhhcccceeccchhhHHHHHHHHhcCCeEEE
Q 047161 148 SRDVRMIGICGMGGVELSEKDGLIALQKQLLSKTLMEIDIEIRNDFDGIKMIKRELRRRNVLVV 211 (720)
Q Consensus 148 ~~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlV 211 (720)
++++.++.|.||||. -+..+.++-.+.+ ..-..-+-.+..-...+|++|....|-|+
T Consensus 83 ~d~~d~ivIAGMGG~------lI~~ILee~~~~l-~~~~rlILQPn~~~~~LR~~L~~~~~~I~ 139 (226)
T COG2384 83 EDEIDVIVIAGMGGT------LIREILEEGKEKL-KGVERLILQPNIHTYELREWLSANSYEIK 139 (226)
T ss_pred cCCcCEEEEeCCcHH------HHHHHHHHhhhhh-cCcceEEECCCCCHHHHHHHHHhCCceee
Confidence 357899999999996 3334443333331 11111122333445567777777766555
No 203
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=62.94 E-value=1.2e+02 Score=35.94 Aligned_cols=163 Identities=16% Similarity=0.183 Sum_probs=82.0
Q ss_pred CCCccccchhHHHHHHhhhc-----------cCCCeEEEEEecCCCccccchhcHHHHHHHHHHhhhhcccceec-----
Q 047161 127 LDDLVEMNSRLKKLRLLLDA-----------ESRDVRMIGICGMGGVELSEKDGLIALQKQLLSKTLMEIDIEIR----- 190 (720)
Q Consensus 127 ~~~~vG~~~~~~~i~~~L~~-----------~~~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~~~~~~~----- 190 (720)
.+++.|++..++++.+++.. +-...+-|.++|..|.+. ..+.+.+...+ ........
T Consensus 177 ~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGK------T~laraia~~~-~~~~i~i~~~~i~ 249 (733)
T TIGR01243 177 YEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGK------TLLAKAVANEA-GAYFISINGPEIM 249 (733)
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCCh------HHHHHHHHHHh-CCeEEEEecHHHh
Confidence 35688999999998777631 112235577999999843 34444444431 11111110
Q ss_pred ------cchhhHHHHHHHHhcCCeEEEEecCCcHH-------------HHHHHhccCCCC-CCCCeEEE-EcCChh-hhh
Q 047161 191 ------NDFDGIKMIKRELRRRNVLVVIDDAVHIR-------------QLNRLAGKHSWF-GSGSRIII-PTRDEH-LLR 248 (720)
Q Consensus 191 ------~~~~~~~~l~~~l~~kr~LlVLDdv~~~~-------------~~~~l~~~~~~~-~~gsrIiv-TTR~~~-v~~ 248 (720)
........+.....+...+|++||++... ....+...+... ..+..+|| ||.... +-.
T Consensus 250 ~~~~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~vivI~atn~~~~ld~ 329 (733)
T TIGR01243 250 SKYYGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVIVIGATNRPDALDP 329 (733)
T ss_pred cccccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEEEEeecCChhhcCH
Confidence 01111222223334566889999985421 122333333222 23344444 554332 211
Q ss_pred h----ccccceEecCCCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHhCCCc
Q 047161 249 T----LRVDGVYKVEKLDDDEALELFNKRAFDGQPSKDYVELIKRIVKYADGLP 298 (720)
Q Consensus 249 ~----~~~~~~~~l~~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~i~~~c~glP 298 (720)
. ...+..+.+...+.++-.+++..+.-......+ .....+++.+.|.-
T Consensus 330 al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d--~~l~~la~~t~G~~ 381 (733)
T TIGR01243 330 ALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAED--VDLDKLAEVTHGFV 381 (733)
T ss_pred HHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCccc--cCHHHHHHhCCCCC
Confidence 1 123557788888888888888754422211111 11345666677654
No 204
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=61.80 E-value=2.6e+02 Score=31.08 Aligned_cols=168 Identities=11% Similarity=0.106 Sum_probs=90.3
Q ss_pred CCCccccchhHHHHHHhhhccCCCeEEEEEecCCCccccchhcHHHHHHHHHHhhhh--------------------ccc
Q 047161 127 LDDLVEMNSRLKKLRLLLDAESRDVRMIGICGMGGVELSEKDGLIALQKQLLSKTLM--------------------EID 186 (720)
Q Consensus 127 ~~~~vG~~~~~~~i~~~L~~~~~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~--------------------~~~ 186 (720)
..+++|-+.-++.+.+.+..+ .-...+-++|..|++.+ .+.+-+...+.. ...
T Consensus 15 f~diiGq~~i~~~L~~~i~~~-~i~hayLf~Gp~G~GKT------tlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~ 87 (486)
T PRK14953 15 FKEVIGQEIVVRILKNAVKLQ-RVSHAYIFAGPRGTGKT------TIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSF 87 (486)
T ss_pred HHHccChHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHH------HHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCC
Confidence 357889998888888888532 12234567999999432 222222222110 000
Q ss_pred cee---c-cchhhH---HHHHHHH-----hcCCeEEEEecCCcH--HHHHHHhccCCCCCCCCeEEEEc-CChhhhhhcc
Q 047161 187 IEI---R-NDFDGI---KMIKREL-----RRRNVLVVIDDAVHI--RQLNRLAGKHSWFGSGSRIIIPT-RDEHLLRTLR 251 (720)
Q Consensus 187 ~~~---~-~~~~~~---~~l~~~l-----~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIivTT-R~~~v~~~~~ 251 (720)
.+. . ...... +.+.+.. .+++-++|+|+++.. ...+.|...+....+...+|++| +-..+.....
T Consensus 88 ~d~~eidaas~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~Il~tt~~~kl~~tI~ 167 (486)
T PRK14953 88 PDLIEIDAASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTTEYDKIPPTIL 167 (486)
T ss_pred CcEEEEeCccCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEECCHHHHHHHHH
Confidence 000 0 011122 2333333 256668999998754 44666666665544556655554 4344433221
Q ss_pred -ccceEecCCCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHhCCCchHHH
Q 047161 252 -VDGVYKVEKLDDDEALELFNKRAFDGQPSKDYVELIKRIVKYADGLPFALE 302 (720)
Q Consensus 252 -~~~~~~l~~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~i~~~c~glPLai~ 302 (720)
-...+++.+++.++-...+.+.+-...... -.+....++..++|.+-.+.
T Consensus 168 SRc~~i~f~~ls~~el~~~L~~i~k~egi~i-d~~al~~La~~s~G~lr~al 218 (486)
T PRK14953 168 SRCQRFIFSKPTKEQIKEYLKRICNEEKIEY-EEKALDLLAQASEGGMRDAA 218 (486)
T ss_pred HhceEEEcCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHH
Confidence 123788999999998877776553221111 12334567778888665443
No 205
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=61.73 E-value=3e+02 Score=31.72 Aligned_cols=168 Identities=15% Similarity=0.129 Sum_probs=90.3
Q ss_pred CCCccccchhHHHHHHhhhccCCCeEEEEEecCCCccccchhcHHHHHHHHHHhhhh----------------------c
Q 047161 127 LDDLVEMNSRLKKLRLLLDAESRDVRMIGICGMGGVELSEKDGLIALQKQLLSKTLM----------------------E 184 (720)
Q Consensus 127 ~~~~vG~~~~~~~i~~~L~~~~~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~----------------------~ 184 (720)
..+++|-+..++.+...+..+. -..-+-++|..|++.+. +.+.+.+.+.. .
T Consensus 15 f~~liGq~~i~~~L~~~l~~~r-l~~a~Lf~Gp~G~GKtt------lA~~lAk~L~c~~~~~~~~~~Cg~C~~C~~i~~g 87 (620)
T PRK14948 15 FDELVGQEAIATTLKNALISNR-IAPAYLFTGPRGTGKTS------SARILAKSLNCLNSDKPTPEPCGKCELCRAIAAG 87 (620)
T ss_pred HhhccChHHHHHHHHHHHHcCC-CCceEEEECCCCCChHH------HHHHHHHHhcCCCcCCCCCCCCcccHHHHHHhcC
Confidence 3578898888888888875322 12345688999983221 11112111110 0
Q ss_pred ccc---eecc-chhhHHHHHHHH--------hcCCeEEEEecCCcH--HHHHHHhccCCCCCCCCeEEEEcCC-hhhhhh
Q 047161 185 IDI---EIRN-DFDGIKMIKREL--------RRRNVLVVIDDAVHI--RQLNRLAGKHSWFGSGSRIIIPTRD-EHLLRT 249 (720)
Q Consensus 185 ~~~---~~~~-~~~~~~~l~~~l--------~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIivTTR~-~~v~~~ 249 (720)
... .... .....+.+++.+ .+++-++|+|+++.. +.++.|...+........+|++|.+ ..+...
T Consensus 88 ~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~llpT 167 (620)
T PRK14948 88 NALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPT 167 (620)
T ss_pred CCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhhHH
Confidence 000 0111 112333444333 245567899999854 4577777776644445555555543 344433
Q ss_pred ccc-cceEecCCCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHhCCCchHHH
Q 047161 250 LRV-DGVYKVEKLDDDEALELFNKRAFDGQPSKDYVELIKRIVKYADGLPFALE 302 (720)
Q Consensus 250 ~~~-~~~~~l~~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~i~~~c~glPLai~ 302 (720)
... -..+++..++.++....+.+.+-.....- -.+....+++.++|.+..+.
T Consensus 168 IrSRc~~~~f~~l~~~ei~~~L~~ia~kegi~i-s~~al~~La~~s~G~lr~A~ 220 (620)
T PRK14948 168 IISRCQRFDFRRIPLEAMVQHLSEIAEKESIEI-EPEALTLVAQRSQGGLRDAE 220 (620)
T ss_pred HHhheeEEEecCCCHHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHcCCCHHHHH
Confidence 221 23677888988888777766553321110 12345678888888775443
No 206
>PRK10865 protein disaggregation chaperone; Provisional
Probab=60.96 E-value=81 Score=37.90 Aligned_cols=135 Identities=14% Similarity=0.142 Sum_probs=70.4
Q ss_pred CCccccchhHHHHHHhhhccCCCeEEEEEecCCCccccchhcHHHHHHHHHHhhhhcc------cce-----eccc----
Q 047161 128 DDLVEMNSRLKKLRLLLDAESRDVRMIGICGMGGVELSEKDGLIALQKQLLSKTLMEI------DIE-----IRND---- 192 (720)
Q Consensus 128 ~~~vG~~~~~~~i~~~L~~~~~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~~------~~~-----~~~~---- 192 (720)
+.+|||+.++.+++..|..... .-+-++|.+|++ ...+.+.+...+.... ... ....
T Consensus 178 ~~vigr~~ei~~~i~iL~r~~~--~n~lL~G~pGvG------KT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~l~ag~ 249 (857)
T PRK10865 178 DPVIGRDEEIRRTIQVLQRRTK--NNPVLIGEPGVG------KTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGA 249 (857)
T ss_pred CcCCCCHHHHHHHHHHHhcCCc--CceEEECCCCCC------HHHHHHHHHHHhhcCCCchhhCCCEEEEEehhhhhhcc
Confidence 5699999999999998864322 224488999983 3334444444322100 000 0000
Q ss_pred ---hhhHHHHHHHH-----hcCCeEEEEecCCcHH----------HHHHHhccCCCCCCC-CeEEEEcCChhhhhhc---
Q 047161 193 ---FDGIKMIKREL-----RRRNVLVVIDDAVHIR----------QLNRLAGKHSWFGSG-SRIIIPTRDEHLLRTL--- 250 (720)
Q Consensus 193 ---~~~~~~l~~~l-----~~kr~LlVLDdv~~~~----------~~~~l~~~~~~~~~g-srIivTTR~~~v~~~~--- 250 (720)
.+..+.++..+ .+++.+|++|++.... .-+-|+..+ ..| =++|-+|.-...-...
T Consensus 250 ~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l---~~g~l~~IgaTt~~e~r~~~~~d 326 (857)
T PRK10865 250 KYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPAL---ARGELHCVGATTLDEYRQYIEKD 326 (857)
T ss_pred chhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchh---hcCCCeEEEcCCCHHHHHHhhhc
Confidence 01111233322 2468999999986542 112222222 233 2455555444321111
Q ss_pred -----cccceEecCCCCHHHHHHHHHHHh
Q 047161 251 -----RVDGVYKVEKLDDDEALELFNKRA 274 (720)
Q Consensus 251 -----~~~~~~~l~~L~~~~s~~Lf~~~a 274 (720)
..+ .+.+...+.++..+++....
T Consensus 327 ~al~rRf~-~i~v~eP~~~~~~~iL~~l~ 354 (857)
T PRK10865 327 AALERRFQ-KVFVAEPSVEDTIAILRGLK 354 (857)
T ss_pred HHHHhhCC-EEEeCCCCHHHHHHHHHHHh
Confidence 223 45577778999999886543
No 207
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=60.30 E-value=1.4e+02 Score=34.34 Aligned_cols=41 Identities=20% Similarity=0.301 Sum_probs=30.1
Q ss_pred CCCCccccchhHHHHHHhhhcc---CCCeEEEEEecCCCccccc
Q 047161 126 ILDDLVEMNSRLKKLRLLLDAE---SRDVRMIGICGMGGVELSE 166 (720)
Q Consensus 126 ~~~~~vG~~~~~~~i~~~L~~~---~~~~~vi~I~G~gGi~vs~ 166 (720)
..++++|-+..++++..++... ....+++.|+|..|.+.+.
T Consensus 82 ~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTT 125 (637)
T TIGR00602 82 TQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKST 125 (637)
T ss_pred CHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHH
Confidence 4467899888888888887532 2334679999999995444
No 208
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=59.95 E-value=4.6 Score=23.63 Aligned_cols=14 Identities=43% Similarity=0.567 Sum_probs=7.7
Q ss_pred CCCCEEeccCcccc
Q 047161 544 ESLEELDVSGTVIR 557 (720)
Q Consensus 544 ~~L~~L~L~~n~l~ 557 (720)
++|++|+|++|.+.
T Consensus 2 ~~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 2 PNLETLDLSNNQIT 15 (24)
T ss_dssp TT-SEEE-TSSBEH
T ss_pred CCCCEEEccCCcCC
Confidence 56667777776654
No 209
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=59.52 E-value=6.7 Score=23.54 Aligned_cols=13 Identities=31% Similarity=0.884 Sum_probs=7.0
Q ss_pred CCCceeecccccc
Q 047161 644 PKFKHLKLDDCKR 656 (720)
Q Consensus 644 ~~L~~L~L~~c~~ 656 (720)
++|++|+|++|++
T Consensus 2 ~~L~~L~l~~C~~ 14 (26)
T smart00367 2 PNLRELDLSGCTN 14 (26)
T ss_pred CCCCEeCCCCCCC
Confidence 4555555555543
No 210
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=59.40 E-value=88 Score=27.00 Aligned_cols=57 Identities=23% Similarity=0.181 Sum_probs=30.3
Q ss_pred EEEecCCCccccchhcHHHHHHHHHHhhhhccccee-------ccchhhHHHHHHHHh----cC-CeEEEEecCCc
Q 047161 154 IGICGMGGVELSEKDGLIALQKQLLSKTLMEIDIEI-------RNDFDGIKMIKRELR----RR-NVLVVIDDAVH 217 (720)
Q Consensus 154 i~I~G~gGi~vs~~~~~~~~~~~il~~~~~~~~~~~-------~~~~~~~~~l~~~l~----~k-r~LlVLDdv~~ 217 (720)
|-|+|..|. +...+.+.+.+.+ +..-... ....+..+.++..++ .. +.+|++||++.
T Consensus 1 ill~G~~G~------GKT~l~~~la~~l-~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~ 69 (132)
T PF00004_consen 1 ILLHGPPGT------GKTTLARALAQYL-GFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDK 69 (132)
T ss_dssp EEEESSTTS------SHHHHHHHHHHHT-TSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGG
T ss_pred CEEECcCCC------CeeHHHHHHHhhc-ccccccccccccccccccccccccccccccccccccceeeeeccchh
Confidence 458899998 4555556666552 2111111 111222333333332 33 79999999874
No 211
>PRK07952 DNA replication protein DnaC; Validated
Probab=58.69 E-value=2e+02 Score=28.66 Aligned_cols=27 Identities=19% Similarity=0.325 Sum_probs=15.5
Q ss_pred hhhhhccc-CcccccccchHHHHHHHHH
Q 047161 45 CLDELAKI-PTVVRKQTRSFHEAFAKHE 71 (720)
Q Consensus 45 cl~el~~i-p~~vr~~~~~~~~~~~~~~ 71 (720)
.|+-|.+| |.+|...-.+.++-.+...
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 34 (244)
T PRK07952 7 LMQRLQKMMPAHIKPAFKTGEELLAWQK 34 (244)
T ss_pred HHHHHHHhCcccCCCCcCCHHHHHHHHH
Confidence 35556666 8888776555554444433
No 212
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=58.17 E-value=2e+02 Score=33.91 Aligned_cols=160 Identities=19% Similarity=0.214 Sum_probs=85.9
Q ss_pred CCccccchhHHHHHHhhhc-----------cCCCeEEEEEecCCCccccchhcHHHHHHHHHHhhhhcccceec------
Q 047161 128 DDLVEMNSRLKKLRLLLDA-----------ESRDVRMIGICGMGGVELSEKDGLIALQKQLLSKTLMEIDIEIR------ 190 (720)
Q Consensus 128 ~~~vG~~~~~~~i~~~L~~-----------~~~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~~~~~~~------ 190 (720)
.++.|.+..++++.+.+.. +-...+-|-++|..|. +...+.+.+... .+.......
T Consensus 453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGt------GKT~lakalA~e-~~~~fi~v~~~~l~~ 525 (733)
T TIGR01243 453 SDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGT------GKTLLAKAVATE-SGANFIAVRGPEILS 525 (733)
T ss_pred hhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCC------CHHHHHHHHHHh-cCCCEEEEehHHHhh
Confidence 5688888888888765531 1122344778999998 333444444433 111111110
Q ss_pred ----cchhhHHHHHHHH-hcCCeEEEEecCCcHH--------------HHHHHhccCCCC--CCCCeEEEEcCChhhhhh
Q 047161 191 ----NDFDGIKMIKREL-RRRNVLVVIDDAVHIR--------------QLNRLAGKHSWF--GSGSRIIIPTRDEHLLRT 249 (720)
Q Consensus 191 ----~~~~~~~~l~~~l-~~kr~LlVLDdv~~~~--------------~~~~l~~~~~~~--~~gsrIivTTR~~~v~~~ 249 (720)
........+.+.. ......|++|+++... ....+...++.. ..+--||.||...+....
T Consensus 526 ~~vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~~ld~ 605 (733)
T TIGR01243 526 KWVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPDILDP 605 (733)
T ss_pred cccCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEEEEEeCCChhhCCH
Confidence 0111122222222 3567899999986421 123333333322 223456777766554432
Q ss_pred -----ccccceEecCCCCHHHHHHHHHHHhcCC--CCCchHHHHHHHHHHHhCCCc
Q 047161 250 -----LRVDGVYKVEKLDDDEALELFNKRAFDG--QPSKDYVELIKRIVKYADGLP 298 (720)
Q Consensus 250 -----~~~~~~~~l~~L~~~~s~~Lf~~~af~~--~~~~~~~~~~~~i~~~c~glP 298 (720)
-..+..+.++..+.++-.++|..+.-+. ....++. .+++.+.|.-
T Consensus 606 allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~l~----~la~~t~g~s 657 (733)
T TIGR01243 606 ALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVDLE----ELAEMTEGYT 657 (733)
T ss_pred hhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccCCHH----HHHHHcCCCC
Confidence 1456788999999999999998765433 2223343 3455566643
No 213
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=57.95 E-value=1.8e+02 Score=31.25 Aligned_cols=13 Identities=38% Similarity=0.675 Sum_probs=11.5
Q ss_pred CeEEEEEecCCCc
Q 047161 150 DVRMIGICGMGGV 162 (720)
Q Consensus 150 ~~~vi~I~G~gGi 162 (720)
+.++|+++|.+|+
T Consensus 240 ~~~vI~LVGptGv 252 (436)
T PRK11889 240 EVQTIALIGPTGV 252 (436)
T ss_pred CCcEEEEECCCCC
Confidence 4579999999999
No 214
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=57.30 E-value=6.4 Score=37.37 Aligned_cols=38 Identities=16% Similarity=0.074 Sum_probs=21.3
Q ss_pred CCcceEeeCCCCchhHHhhhccCccccCCCCCCCCceeeecCCCCC
Q 047161 424 MDKTLECNMCYRRIEQFWKGIKNLIRTPDFTGAPNLEELILDGCKR 469 (720)
Q Consensus 424 ~~~l~~L~l~~~~i~~l~~~~~~l~~~~~~~~l~~L~~L~L~~~~~ 469 (720)
...+..++-+++.|...- ...+..++.++.|.+.+|..
T Consensus 100 ~~~IeaVDAsds~I~~eG--------le~L~~l~~i~~l~l~~ck~ 137 (221)
T KOG3864|consen 100 NVKIEAVDASDSSIMYEG--------LEHLRDLRSIKSLSLANCKY 137 (221)
T ss_pred cceEEEEecCCchHHHHH--------HHHHhccchhhhheeccccc
Confidence 345555555555554331 22355666777777777763
No 215
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=55.93 E-value=9.3 Score=23.16 Aligned_cols=16 Identities=44% Similarity=0.698 Sum_probs=10.5
Q ss_pred CCCCCEEeccCccccc
Q 047161 543 MESLEELDVSGTVIRQ 558 (720)
Q Consensus 543 L~~L~~L~L~~n~l~~ 558 (720)
+++|+.|++++|.|+.
T Consensus 1 L~~L~~L~L~~NkI~~ 16 (26)
T smart00365 1 LTNLEELDLSQNKIKK 16 (26)
T ss_pred CCccCEEECCCCccce
Confidence 3567777777776654
No 216
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=55.14 E-value=1.4e+02 Score=35.87 Aligned_cols=35 Identities=14% Similarity=0.221 Sum_probs=26.0
Q ss_pred CCccccchhHHHHHHhhhcc------C-CCeEEEEEecCCCc
Q 047161 128 DDLVEMNSRLKKLRLLLDAE------S-RDVRMIGICGMGGV 162 (720)
Q Consensus 128 ~~~vG~~~~~~~i~~~L~~~------~-~~~~vi~I~G~gGi 162 (720)
..++|-+..++.+...+... . ....++.++|..|+
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~Gv 606 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGV 606 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCC
Confidence 56899999999998777521 1 12456789999999
No 217
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=54.87 E-value=1.2e+02 Score=36.55 Aligned_cols=35 Identities=11% Similarity=0.284 Sum_probs=26.2
Q ss_pred CCccccchhHHHHHHhhhc-------cCCCeEEEEEecCCCc
Q 047161 128 DDLVEMNSRLKKLRLLLDA-------ESRDVRMIGICGMGGV 162 (720)
Q Consensus 128 ~~~vG~~~~~~~i~~~L~~-------~~~~~~vi~I~G~gGi 162 (720)
..++|-+.-++.+.+.+.. ......++-.+|..|+
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~Gv 607 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGV 607 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCC
Confidence 5689999999888776631 1233567889999999
No 218
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=53.02 E-value=1.3e+02 Score=34.63 Aligned_cols=143 Identities=17% Similarity=0.189 Sum_probs=82.1
Q ss_pred CCCCccccchhHHHHHHhhhc----cCCCeEEEEEecCCCccccchhcHHHHHHHHHHhhhhccccee-----ccchhh-
Q 047161 126 ILDDLVEMNSRLKKLRLLLDA----ESRDVRMIGICGMGGVELSEKDGLIALQKQLLSKTLMEIDIEI-----RNDFDG- 195 (720)
Q Consensus 126 ~~~~~vG~~~~~~~i~~~L~~----~~~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~~~~~~-----~~~~~~- 195 (720)
.+.+-+|.++.+++|.+.|.- +.-+=.+++.||.+|+ +..++-+.|.+. ++++.... .+..+.
T Consensus 321 Ld~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGV------GKTSLgkSIA~a-l~RkfvR~sLGGvrDEAEIR 393 (782)
T COG0466 321 LDKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGV------GKTSLGKSIAKA-LGRKFVRISLGGVRDEAEIR 393 (782)
T ss_pred hcccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCC------CchhHHHHHHHH-hCCCEEEEecCccccHHHhc
Confidence 345678999999999999852 2233479999999999 566777777777 44433322 122211
Q ss_pred ----------HHHHHHHH---hcCCeEEEEecCCcHHH------HHHHhccCCCCCC-------------CCeEE-EEcC
Q 047161 196 ----------IKMIKREL---RRRNVLVVIDDAVHIRQ------LNRLAGKHSWFGS-------------GSRII-IPTR 242 (720)
Q Consensus 196 ----------~~~l~~~l---~~kr~LlVLDdv~~~~~------~~~l~~~~~~~~~-------------gsrIi-vTTR 242 (720)
..++-+-+ +-+.=+++||.|+.... -.+|...++-..+ =|.|+ |||-
T Consensus 394 GHRRTYIGamPGrIiQ~mkka~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmFiaTA 473 (782)
T COG0466 394 GHRRTYIGAMPGKIIQGMKKAGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMFIATA 473 (782)
T ss_pred cccccccccCChHHHHHHHHhCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheEEEeec
Confidence 11233333 34778899999975422 2333333321100 15543 3442
Q ss_pred C-hh-hh-hhccccceEecCCCCHHHHHHHHHHHhc
Q 047161 243 D-EH-LL-RTLRVDGVYKVEKLDDDEALELFNKRAF 275 (720)
Q Consensus 243 ~-~~-v~-~~~~~~~~~~l~~L~~~~s~~Lf~~~af 275 (720)
+ -+ +- ..+.-..++++.+-+++|=.+.=++|..
T Consensus 474 Nsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~Li 509 (782)
T COG0466 474 NSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHLI 509 (782)
T ss_pred CccccCChHHhcceeeeeecCCChHHHHHHHHHhcc
Confidence 2 22 11 1112234788888888888877666653
No 219
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=52.12 E-value=13 Score=36.20 Aligned_cols=45 Identities=18% Similarity=0.285 Sum_probs=28.3
Q ss_pred CCeEEEEecCCcH---HHHHHHhccCCCCCCCCeEEEEcCChhhhhhc
Q 047161 206 RNVLVVIDDAVHI---RQLNRLAGKHSWFGSGSRIIIPTRDEHLLRTL 250 (720)
Q Consensus 206 kr~LlVLDdv~~~---~~~~~l~~~~~~~~~gsrIivTTR~~~v~~~~ 250 (720)
.-=++|||||+.. .....+...+......+.+||||-++.++..+
T Consensus 158 ~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~~~Q~ii~Th~~~~~~~a 205 (220)
T PF02463_consen 158 PSPFLILDEVDAALDEQNRKRLADLLKELSKQSQFIITTHNPEMFEDA 205 (220)
T ss_dssp --SEEEEESTTTTS-HHHHHHHHHHHHHHTTTSEEEEE-S-HHHHTT-
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 4457899999843 33455554444445678999999999988765
No 220
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=50.97 E-value=1e+02 Score=32.06 Aligned_cols=94 Identities=17% Similarity=0.092 Sum_probs=61.2
Q ss_pred cCCeEEEEecCCcHH--HHHHHhccCCCCCCCCeEEEEcCC-hhhhhhccc-cceEecCCCCHHHHHHHHHHHhcCCCCC
Q 047161 205 RRNVLVVIDDAVHIR--QLNRLAGKHSWFGSGSRIIIPTRD-EHLLRTLRV-DGVYKVEKLDDDEALELFNKRAFDGQPS 280 (720)
Q Consensus 205 ~kr~LlVLDdv~~~~--~~~~l~~~~~~~~~gsrIivTTR~-~~v~~~~~~-~~~~~l~~L~~~~s~~Lf~~~af~~~~~ 280 (720)
+++=++|+|+++... .-..|...+..-.+++.+|++|.+ ..+...... -..+.+.+++.+++.+.+.... ..
T Consensus 112 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRCq~i~~~~~~~~~~~~~L~~~~---~~- 187 (319)
T PRK08769 112 GIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRLEFKLPPAHEALAWLLAQG---VS- 187 (319)
T ss_pred CCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhheEeeCCCcCHHHHHHHHHHcC---CC-
Confidence 455678899988653 355555555544567777777764 455544432 2367899999999988876531 11
Q ss_pred chHHHHHHHHHHHhCCCchHHHHhh
Q 047161 281 KDYVELIKRIVKYADGLPFALETLG 305 (720)
Q Consensus 281 ~~~~~~~~~i~~~c~glPLai~~~g 305 (720)
..-+..++..++|.|+.+..+.
T Consensus 188 ---~~~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 188 ---ERAAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred ---hHHHHHHHHHcCCCHHHHHHHh
Confidence 1225677899999998765543
No 221
>PRK06526 transposase; Provisional
Probab=49.14 E-value=44 Score=33.52 Aligned_cols=13 Identities=15% Similarity=0.100 Sum_probs=9.8
Q ss_pred EEEEEecCCCccc
Q 047161 152 RMIGICGMGGVEL 164 (720)
Q Consensus 152 ~vi~I~G~gGi~v 164 (720)
.-+.|+|.+|.+.
T Consensus 99 ~nlll~Gp~GtGK 111 (254)
T PRK06526 99 ENVVFLGPPGTGK 111 (254)
T ss_pred ceEEEEeCCCCch
Confidence 3578999999933
No 222
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=48.85 E-value=2.9e+02 Score=32.09 Aligned_cols=74 Identities=18% Similarity=0.191 Sum_probs=45.3
Q ss_pred hcCCeEEEEecCCcHH------------H----HHHHhccCCCCC--CCCeEEEEcCChhhhhhc-----cccceEecCC
Q 047161 204 RRRNVLVVIDDAVHIR------------Q----LNRLAGKHSWFG--SGSRIIIPTRDEHLLRTL-----RVDGVYKVEK 260 (720)
Q Consensus 204 ~~kr~LlVLDdv~~~~------------~----~~~l~~~~~~~~--~gsrIivTTR~~~v~~~~-----~~~~~~~l~~ 260 (720)
......|++|+++... . ...+...++.+. .|--+|.||...+..... ..+..+.+..
T Consensus 242 ~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~ 321 (644)
T PRK10733 242 KAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGL 321 (644)
T ss_pred hcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCC
Confidence 3567899999987541 1 223332233222 244556688766654321 3467888999
Q ss_pred CCHHHHHHHHHHHhcCC
Q 047161 261 LDDDEALELFNKRAFDG 277 (720)
Q Consensus 261 L~~~~s~~Lf~~~af~~ 277 (720)
.+.++-.+++..+.-..
T Consensus 322 Pd~~~R~~Il~~~~~~~ 338 (644)
T PRK10733 322 PDVRGREQILKVHMRRV 338 (644)
T ss_pred CCHHHHHHHHHHHhhcC
Confidence 99888888888776443
No 223
>PRK10865 protein disaggregation chaperone; Provisional
Probab=46.04 E-value=4.4e+02 Score=31.80 Aligned_cols=36 Identities=14% Similarity=0.202 Sum_probs=25.8
Q ss_pred CCCccccchhHHHHHHhhhcc-------CCCeEEEEEecCCCc
Q 047161 127 LDDLVEMNSRLKKLRLLLDAE-------SRDVRMIGICGMGGV 162 (720)
Q Consensus 127 ~~~~vG~~~~~~~i~~~L~~~-------~~~~~vi~I~G~gGi 162 (720)
...++|-+..++.+...+... .....++.++|..|+
T Consensus 567 ~~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~ 609 (857)
T PRK10865 567 HHRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGV 609 (857)
T ss_pred CCeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCC
Confidence 356889999888887766421 122457889999999
No 224
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=45.98 E-value=60 Score=32.57 Aligned_cols=62 Identities=21% Similarity=0.214 Sum_probs=32.0
Q ss_pred CeEEEEEecCCCccccchhcHHHHHHHHHHhhhhc-ccceeccchhhHHHHHHHHh------------cCCeEEEEecCC
Q 047161 150 DVRMIGICGMGGVELSEKDGLIALQKQLLSKTLME-IDIEIRNDFDGIKMIKRELR------------RRNVLVVIDDAV 216 (720)
Q Consensus 150 ~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~-~~~~~~~~~~~~~~l~~~l~------------~kr~LlVLDdv~ 216 (720)
...=+.++|..|+ +..++...|...+... ...-..+..++...++.... .+-=||||||+-
T Consensus 104 ~~~nl~l~G~~G~------GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~l~~~dlLIiDDlG 177 (254)
T COG1484 104 RGENLVLLGPPGV------GKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEGRLEEKLLRELKKVDLLIIDDIG 177 (254)
T ss_pred cCCcEEEECCCCC------cHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhcCchHHHHHHHhhcCCEEEEeccc
Confidence 4455789999998 4444455555554311 11112233344444433222 123478999985
Q ss_pred c
Q 047161 217 H 217 (720)
Q Consensus 217 ~ 217 (720)
.
T Consensus 178 ~ 178 (254)
T COG1484 178 Y 178 (254)
T ss_pred C
Confidence 4
No 225
>CHL00095 clpC Clp protease ATP binding subunit
Probab=45.73 E-value=2.2e+02 Score=34.10 Aligned_cols=110 Identities=15% Similarity=0.154 Sum_probs=60.0
Q ss_pred CCccccchhHHHHHHhhhc-------cCCCeEEEEEecCCCccccchhcHHHHHHHHHHhhhhccc-c---eec------
Q 047161 128 DDLVEMNSRLKKLRLLLDA-------ESRDVRMIGICGMGGVELSEKDGLIALQKQLLSKTLMEID-I---EIR------ 190 (720)
Q Consensus 128 ~~~vG~~~~~~~i~~~L~~-------~~~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~~~-~---~~~------ 190 (720)
..++|-+.-++.|...+.. ....+.++-++|..|++ ...+.+.+...+.+... . +..
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvG------Kt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~ 582 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVG------KTELTKALASYFFGSEDAMIRLDMSEYMEKH 582 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCc------HHHHHHHHHHHhcCCccceEEEEchhccccc
Confidence 5688988888888776641 11224456689999993 33333333333221110 0 000
Q ss_pred cc------------hhhHHHHHHHHhcCCe-EEEEecCCcH--HHHHHHhccCCCC-----------CCCCeEEEEcCC
Q 047161 191 ND------------FDGIKMIKRELRRRNV-LVVIDDAVHI--RQLNRLAGKHSWF-----------GSGSRIIIPTRD 243 (720)
Q Consensus 191 ~~------------~~~~~~l~~~l~~kr~-LlVLDdv~~~--~~~~~l~~~~~~~-----------~~gsrIivTTR~ 243 (720)
.. .+....+.+.++.+.| ++++|++... +.++.|...+..+ ...+-||+||..
T Consensus 583 ~~~~l~g~~~gyvg~~~~~~l~~~~~~~p~~VvllDeieka~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~Tsn~ 661 (821)
T CHL00095 583 TVSKLIGSPPGYVGYNEGGQLTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMTSNL 661 (821)
T ss_pred cHHHhcCCCCcccCcCccchHHHHHHhCCCeEEEECChhhCCHHHHHHHHHHhccCceecCCCcEEecCceEEEEeCCc
Confidence 00 0011346667776665 7889999753 4466666665532 134557777764
No 226
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=45.41 E-value=24 Score=34.06 Aligned_cols=59 Identities=25% Similarity=0.232 Sum_probs=31.2
Q ss_pred CeEEEEEecCCCccccchhcHHHHHHHHHHhhhhcccceeccchhhHHHHHHHHhcCCeEEEEecC
Q 047161 150 DVRMIGICGMGGVELSEKDGLIALQKQLLSKTLMEIDIEIRNDFDGIKMIKRELRRRNVLVVIDDA 215 (720)
Q Consensus 150 ~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVLDdv 215 (720)
++.+|.|.||||. .+..+.++.... ......=+-.+......+|++|....|-|+=.++
T Consensus 66 ~~d~ivIAGMGG~------lI~~ILe~~~~~-~~~~~~lILqP~~~~~~LR~~L~~~gf~I~~E~l 124 (205)
T PF04816_consen 66 DVDTIVIAGMGGE------LIIEILEAGPEK-LSSAKRLILQPNTHAYELRRWLYENGFEIIDEDL 124 (205)
T ss_dssp ---EEEEEEE-HH------HHHHHHHHTGGG-GTT--EEEEEESS-HHHHHHHHHHTTEEEEEEEE
T ss_pred CCCEEEEecCCHH------HHHHHHHhhHHH-hccCCeEEEeCCCChHHHHHHHHHCCCEEEEeEE
Confidence 4789999999996 233333322222 1111111234445678899999999988775543
No 227
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=44.80 E-value=4e+02 Score=28.07 Aligned_cols=91 Identities=18% Similarity=0.185 Sum_probs=60.5
Q ss_pred cCCeEEEEecCCcH--HHHHHHhccCCCCCCCCeEEEEcCC-hhhhhhccc-cceEecCCCCHHHHHHHHHHHhcCCCCC
Q 047161 205 RRNVLVVIDDAVHI--RQLNRLAGKHSWFGSGSRIIIPTRD-EHLLRTLRV-DGVYKVEKLDDDEALELFNKRAFDGQPS 280 (720)
Q Consensus 205 ~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIivTTR~-~~v~~~~~~-~~~~~l~~L~~~~s~~Lf~~~af~~~~~ 280 (720)
+++=.+|+|+++.. ..+..|...+..-.++..+|.+|.+ ..+...... -..+.+.+++.++..+.+..... +
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~~---~- 206 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQGV---A- 206 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcCC---C-
Confidence 44556788998854 4577887777766678876666655 555544322 24788999999999988876421 1
Q ss_pred chHHHHHHHHHHHhCCCchHHHHh
Q 047161 281 KDYVELIKRIVKYADGLPFALETL 304 (720)
Q Consensus 281 ~~~~~~~~~i~~~c~glPLai~~~ 304 (720)
+ ...++..++|.|..+..+
T Consensus 207 -~----~~~~l~~~~Gsp~~Al~~ 225 (342)
T PRK06964 207 -D----ADALLAEAGGAPLAALAL 225 (342)
T ss_pred -h----HHHHHHHcCCCHHHHHHH
Confidence 1 123577889999755544
No 228
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=44.45 E-value=1.6e+02 Score=30.62 Aligned_cols=90 Identities=17% Similarity=0.172 Sum_probs=61.4
Q ss_pred CCeEEEEecCCcH--HHHHHHhccCCCCCCCCeEEEEcCC-hhhhhhccc-cceEecCCCCHHHHHHHHHHHhcCCCCCc
Q 047161 206 RNVLVVIDDAVHI--RQLNRLAGKHSWFGSGSRIIIPTRD-EHLLRTLRV-DGVYKVEKLDDDEALELFNKRAFDGQPSK 281 (720)
Q Consensus 206 kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIivTTR~-~~v~~~~~~-~~~~~l~~L~~~~s~~Lf~~~af~~~~~~ 281 (720)
++=.+|+|++... .....|...+..-.+++.+|++|.+ ..+...... -..+.+.+++.+++.+.+..... .
T Consensus 108 ~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRCq~~~~~~~~~~~~~~~L~~~~~----~- 182 (319)
T PRK06090 108 GYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQQWVVTPPSTAQAMQWLKGQGI----T- 182 (319)
T ss_pred CceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcceeEeCCCCCHHHHHHHHHHcCC----c-
Confidence 3446778988754 4477777777655667777776665 456655433 23789999999999988765311 1
Q ss_pred hHHHHHHHHHHHhCCCchHHHHh
Q 047161 282 DYVELIKRIVKYADGLPFALETL 304 (720)
Q Consensus 282 ~~~~~~~~i~~~c~glPLai~~~ 304 (720)
....++..++|.|+.+..+
T Consensus 183 ----~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 183 ----VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred ----hHHHHHHHcCCCHHHHHHH
Confidence 1346788999999877654
No 229
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=43.77 E-value=3.4e+02 Score=26.98 Aligned_cols=116 Identities=19% Similarity=0.171 Sum_probs=62.1
Q ss_pred cCCCCCccccchhHHHHHHhhh---ccCCCeEEEEEecCCCccccchhcHHHHHHHHHHhhhhcccc---ee--ccchhh
Q 047161 124 LGILDDLVEMNSRLKKLRLLLD---AESRDVRMIGICGMGGVELSEKDGLIALQKQLLSKTLMEIDI---EI--RNDFDG 195 (720)
Q Consensus 124 ~~~~~~~vG~~~~~~~i~~~L~---~~~~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~~~~---~~--~~~~~~ 195 (720)
..+-..++|.|..++.+++=.. .+- ..--|-.||.-|.+.| ++.+.++..+ ..... ++ .+...
T Consensus 56 ~i~L~~l~Gvd~qk~~L~~NT~~F~~G~-pANnVLLwGaRGtGKS------SLVKA~~~e~-~~~glrLVEV~k~dl~~- 126 (287)
T COG2607 56 PIDLADLVGVDRQKEALVRNTEQFAEGL-PANNVLLWGARGTGKS------SLVKALLNEY-ADEGLRLVEVDKEDLAT- 126 (287)
T ss_pred CcCHHHHhCchHHHHHHHHHHHHHHcCC-cccceEEecCCCCChH------HHHHHHHHHH-HhcCCeEEEEcHHHHhh-
Confidence 3455679999999988864221 121 1222456777777333 4555555553 22221 11 12212
Q ss_pred HHHHHHHHh--cCCeEEEEecCCc---HHHHHHHhccCCCC---CCCCeEEEEcCC-hhhhh
Q 047161 196 IKMIKRELR--RRNVLVVIDDAVH---IRQLNRLAGKHSWF---GSGSRIIIPTRD-EHLLR 248 (720)
Q Consensus 196 ~~~l~~~l~--~kr~LlVLDdv~~---~~~~~~l~~~~~~~---~~gsrIivTTR~-~~v~~ 248 (720)
...|-+.|+ .+||.|..||..- .+....|+..+..+ .|...++..|.+ ++...
T Consensus 127 Lp~l~~~Lr~~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSNRRHLl~ 188 (287)
T COG2607 127 LPDLVELLRARPEKFILFCDDLSFEEGDDAYKALKSALEGGVEGRPANVLFYATSNRRHLLP 188 (287)
T ss_pred HHHHHHHHhcCCceEEEEecCCCCCCCchHHHHHHHHhcCCcccCCCeEEEEEecCCccccc
Confidence 233444554 6899999999852 34467777666532 234455555544 34433
No 230
>PHA00729 NTP-binding motif containing protein
Probab=42.11 E-value=3e+02 Score=27.06 Aligned_cols=108 Identities=9% Similarity=0.052 Sum_probs=55.0
Q ss_pred CCeEEEEEecCCCccccchhcHHHHHHHHHHhhh--------------hcccceeccchhhHHHHHHHHhcC-C-eEEEE
Q 047161 149 RDVRMIGICGMGGVELSEKDGLIALQKQLLSKTL--------------MEIDIEIRNDFDGIKMIKRELRRR-N-VLVVI 212 (720)
Q Consensus 149 ~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~--------------~~~~~~~~~~~~~~~~l~~~l~~k-r-~LlVL 212 (720)
.+...|.|+|.+|++.|. +...+...+. .....-.-+.+++...++....+. + =+||+
T Consensus 15 ~~f~nIlItG~pGvGKT~------LA~aLa~~l~~~l~~l~~~~~~~d~~~~~~fid~~~Ll~~L~~a~~~~~~~dlLII 88 (226)
T PHA00729 15 NGFVSAVIFGKQGSGKTT------YALKVARDVFWKLNNLSTKDDAWQYVQNSYFFELPDALEKIQDAIDNDYRIPLIIF 88 (226)
T ss_pred CCeEEEEEECCCCCCHHH------HHHHHHHHHHhhcccccchhhHHhcCCcEEEEEHHHHHHHHHHHHhcCCCCCEEEE
Confidence 345578899999995443 3333333321 011122345566667776655442 2 37899
Q ss_pred ecC--CcHH-HHHHHhccCCCCCCCCeEEEEcCChhhhhhcc-ccceEecCCCCHHHHHHHHHHHhcC
Q 047161 213 DDA--VHIR-QLNRLAGKHSWFGSGSRIIIPTRDEHLLRTLR-VDGVYKVEKLDDDEALELFNKRAFD 276 (720)
Q Consensus 213 Ddv--~~~~-~~~~l~~~~~~~~~gsrIivTTR~~~v~~~~~-~~~~~~l~~L~~~~s~~Lf~~~af~ 276 (720)
||+ |-.. .|..-. . +--..+...+. -...+.+.++++++..+.+..+.+.
T Consensus 89 Dd~G~~~~~~~wh~~~-----------~---~~yf~L~~aLrSR~~l~il~~ls~edL~~~Lr~Rg~~ 142 (226)
T PHA00729 89 DDAGIWLSKYVWYEDY-----------M---KTFYKIYALIRTRVSAVIFTTPSPEDLAFYLREKGWY 142 (226)
T ss_pred eCCchhhcccchhhhc-----------c---chHHHHHHHHHhhCcEEEEecCCHHHHHHHHHhCCCc
Confidence 993 4322 133100 0 00001111111 1235677778888888888876653
No 231
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=41.66 E-value=5e+02 Score=30.01 Aligned_cols=112 Identities=12% Similarity=0.125 Sum_probs=64.2
Q ss_pred CCCCccccchhHHHHHHhhhc--cC-CCeEEEEEecCCCccccc------------------------------hhcHHH
Q 047161 126 ILDDLVEMNSRLKKLRLLLDA--ES-RDVRMIGICGMGGVELSE------------------------------KDGLIA 172 (720)
Q Consensus 126 ~~~~~vG~~~~~~~i~~~L~~--~~-~~~~vi~I~G~gGi~vs~------------------------------~~~~~~ 172 (720)
.++.+-+||.+..+|...+.. .+ ..-+.+-|.|..|.+... -.....
T Consensus 394 vp~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~ 473 (767)
T KOG1514|consen 394 VPESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPRE 473 (767)
T ss_pred ccccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHH
Confidence 556788999999999988852 22 334478899999982211 112333
Q ss_pred HHHHHHHhhhhcccceeccchhhHHHHHHHHh-----cCCeEEEEecCCcHHH--HHHHhccCCCC-CCCCeEEEEc
Q 047161 173 LQKQLLSKTLMEIDIEIRNDFDGIKMIKRELR-----RRNVLVVIDDAVHIRQ--LNRLAGKHSWF-GSGSRIIIPT 241 (720)
Q Consensus 173 ~~~~il~~~~~~~~~~~~~~~~~~~~l~~~l~-----~kr~LlVLDdv~~~~~--~~~l~~~~~~~-~~gsrIivTT 241 (720)
+...|...+. .+........+.+..++. .+..++++|.++..-. -+-+-.-|+|- .++||++|.+
T Consensus 474 ~Y~~I~~~ls----g~~~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~ 546 (767)
T KOG1514|consen 474 IYEKIWEALS----GERVTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIA 546 (767)
T ss_pred HHHHHHHhcc----cCcccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEE
Confidence 3344444421 122233444555666664 4567788888764322 12223344554 5789987766
No 232
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=40.99 E-value=27 Score=34.87 Aligned_cols=15 Identities=13% Similarity=0.561 Sum_probs=12.7
Q ss_pred hcCCeEEEEecCCcH
Q 047161 204 RRRNVLVVIDDAVHI 218 (720)
Q Consensus 204 ~~kr~LlVLDdv~~~ 218 (720)
.|+++++++|++...
T Consensus 101 ~G~~vll~iDei~r~ 115 (249)
T cd01128 101 HGKDVVILLDSITRL 115 (249)
T ss_pred CCCCEEEEEECHHHh
Confidence 489999999998654
No 233
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=40.49 E-value=22 Score=33.48 Aligned_cols=12 Identities=17% Similarity=0.202 Sum_probs=8.8
Q ss_pred EEEEEecCCCcc
Q 047161 152 RMIGICGMGGVE 163 (720)
Q Consensus 152 ~vi~I~G~gGi~ 163 (720)
.-+.|+|..|++
T Consensus 48 ~~l~l~G~~G~G 59 (178)
T PF01695_consen 48 ENLILYGPPGTG 59 (178)
T ss_dssp -EEEEEESTTSS
T ss_pred eEEEEEhhHhHH
Confidence 347889999983
No 234
>PRK09183 transposase/IS protein; Provisional
Probab=39.57 E-value=86 Score=31.54 Aligned_cols=14 Identities=29% Similarity=0.321 Sum_probs=10.4
Q ss_pred EEEEEecCCCcccc
Q 047161 152 RMIGICGMGGVELS 165 (720)
Q Consensus 152 ~vi~I~G~gGi~vs 165 (720)
..+.|+|..|.+.|
T Consensus 103 ~~v~l~Gp~GtGKT 116 (259)
T PRK09183 103 ENIVLLGPSGVGKT 116 (259)
T ss_pred CeEEEEeCCCCCHH
Confidence 45779999999444
No 235
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=38.71 E-value=3.3e+02 Score=30.30 Aligned_cols=135 Identities=15% Similarity=0.214 Sum_probs=76.8
Q ss_pred CeEEEEEecCCCccccchhcHHHHHHHHHHhhhhccccee--------ccchhhHHHHHHHH----hcCCeEEEEecCCc
Q 047161 150 DVRMIGICGMGGVELSEKDGLIALQKQLLSKTLMEIDIEI--------RNDFDGIKMIKREL----RRRNVLVVIDDAVH 217 (720)
Q Consensus 150 ~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~~~~~~--------~~~~~~~~~l~~~l----~~kr~LlVLDdv~~ 217 (720)
.+..+-+.|..|. +...+..+|... ..-....+ .+.......+++.+ +..=-.||+||+..
T Consensus 537 ~lvSvLl~Gp~~s------GKTaLAA~iA~~-S~FPFvKiiSpe~miG~sEsaKc~~i~k~F~DAYkS~lsiivvDdiEr 609 (744)
T KOG0741|consen 537 PLVSVLLEGPPGS------GKTALAAKIALS-SDFPFVKIISPEDMIGLSESAKCAHIKKIFEDAYKSPLSIIVVDDIER 609 (744)
T ss_pred cceEEEEecCCCC------ChHHHHHHHHhh-cCCCeEEEeChHHccCccHHHHHHHHHHHHHHhhcCcceEEEEcchhh
Confidence 4555678899998 344444444433 11111111 12222233344433 56667899999987
Q ss_pred HHHHHHHhccC------------CCCC-CCCe--EEEEcCChhhhhhccc----cceEecCCCCH-HHHHHHHHHHh-cC
Q 047161 218 IRQLNRLAGKH------------SWFG-SGSR--IIIPTRDEHLLRTLRV----DGVYKVEKLDD-DEALELFNKRA-FD 276 (720)
Q Consensus 218 ~~~~~~l~~~~------------~~~~-~gsr--IivTTR~~~v~~~~~~----~~~~~l~~L~~-~~s~~Lf~~~a-f~ 276 (720)
.-+|-.+...+ .... .|-| |+-||....|++.|+. +..|.|+.++. ++..+.++..- |.
T Consensus 610 LiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~~~~~~~vl~~~n~fs 689 (744)
T KOG0741|consen 610 LLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTTGEQLLEVLEELNIFS 689 (744)
T ss_pred hhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccCchHHHHHHHHHccCCC
Confidence 76655443332 2222 3444 6678888999999975 45889999887 77777776543 32
Q ss_pred CCCCchHHHHHHHHHHHh
Q 047161 277 GQPSKDYVELIKRIVKYA 294 (720)
Q Consensus 277 ~~~~~~~~~~~~~i~~~c 294 (720)
+.+...++++...+|
T Consensus 690 ---d~~~~~~~~~~~~~~ 704 (744)
T KOG0741|consen 690 ---DDEVRAIAEQLLSKK 704 (744)
T ss_pred ---cchhHHHHHHHhccc
Confidence 233344445555544
No 236
>PRK06921 hypothetical protein; Provisional
Probab=38.52 E-value=87 Score=31.66 Aligned_cols=26 Identities=19% Similarity=0.248 Sum_probs=17.3
Q ss_pred eEEEEEecCCCccccchhcHHHHHHHHHHhhh
Q 047161 151 VRMIGICGMGGVELSEKDGLIALQKQLLSKTL 182 (720)
Q Consensus 151 ~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~ 182 (720)
..-+.++|..|. +..++...|...+.
T Consensus 117 ~~~l~l~G~~G~------GKThLa~aia~~l~ 142 (266)
T PRK06921 117 KNSIALLGQPGS------GKTHLLTAAANELM 142 (266)
T ss_pred CCeEEEECCCCC------cHHHHHHHHHHHHh
Confidence 456789999998 44555555555543
No 237
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=38.49 E-value=2.7e+02 Score=32.77 Aligned_cols=109 Identities=17% Similarity=0.198 Sum_probs=64.8
Q ss_pred CCccccchhHHHHHHhhh-------ccCCCeEEEEEecCCCccccchhcHHHHHHHHHHhhhhccccee-ccch------
Q 047161 128 DDLVEMNSRLKKLRLLLD-------AESRDVRMIGICGMGGVELSEKDGLIALQKQLLSKTLMEIDIEI-RNDF------ 193 (720)
Q Consensus 128 ~~~vG~~~~~~~i~~~L~-------~~~~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~~~~~~-~~~~------ 193 (720)
..++|-+.-++.+..-+. ..+..+.+.--+|+-|+ +...+.+.+...+++.+..-+ -+..
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGV------GKTELAkaLA~~Lfg~e~aliR~DMSEy~EkH 564 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGV------GKTELAKALAEALFGDEQALIRIDMSEYMEKH 564 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcc------cHHHHHHHHHHHhcCCCccceeechHHHHHHH
Confidence 458898888888876653 22334667777999999 444444555444433221100 0000
Q ss_pred ---------------hhHHHHHHHHhcCCe-EEEEecCCc--HHHHHHHhccCCCC----CCC-------CeEEEEcC
Q 047161 194 ---------------DGIKMIKRELRRRNV-LVVIDDAVH--IRQLNRLAGKHSWF----GSG-------SRIIIPTR 242 (720)
Q Consensus 194 ---------------~~~~~l~~~l~~kr~-LlVLDdv~~--~~~~~~l~~~~~~~----~~g-------srIivTTR 242 (720)
+--..+.+.+++|.| .|.||.|.. .+..+-+...++.+ +.| +-||+||.
T Consensus 565 sVSrLIGaPPGYVGyeeGG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDdGrLTD~~Gr~VdFrNtiIImTSN 642 (786)
T COG0542 565 SVSRLIGAPPGYVGYEEGGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDDGRLTDGQGRTVDFRNTIIIMTSN 642 (786)
T ss_pred HHHHHhCCCCCCceeccccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcCCeeecCCCCEEecceeEEEEecc
Confidence 012356778888988 666899974 46677777777654 233 55777775
No 238
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=38.24 E-value=1.8e+02 Score=26.79 Aligned_cols=57 Identities=21% Similarity=0.270 Sum_probs=34.8
Q ss_pred cCCeEEEEecCCcH--HHHHHHhccCCCCCCCCeEEEEcCChh-hhhhcccc-ceEecCCC
Q 047161 205 RRNVLVVIDDAVHI--RQLNRLAGKHSWFGSGSRIIIPTRDEH-LLRTLRVD-GVYKVEKL 261 (720)
Q Consensus 205 ~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIivTTR~~~-v~~~~~~~-~~~~l~~L 261 (720)
+++=.+|+||++.. +....|...+.....++++|++|++.+ +......- ..+.+++|
T Consensus 101 ~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~~~il~TI~SRc~~i~~~~l 161 (162)
T PF13177_consen 101 GKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNPSKILPTIRSRCQVIRFRPL 161 (162)
T ss_dssp SSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-GGGS-HHHHTTSEEEEE---
T ss_pred CCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECChHHChHHHHhhceEEecCCC
Confidence 45567889999864 557777777766678899988888765 44433221 24555544
No 239
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=37.18 E-value=27 Score=21.40 Aligned_cols=14 Identities=43% Similarity=0.558 Sum_probs=9.7
Q ss_pred CCCCEEeccCcccc
Q 047161 544 ESLEELDVSGTVIR 557 (720)
Q Consensus 544 ~~L~~L~L~~n~l~ 557 (720)
++|++|+|++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 45777777777664
No 240
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=36.60 E-value=73 Score=28.30 Aligned_cols=103 Identities=15% Similarity=0.144 Sum_probs=48.4
Q ss_pred cccchhHHHHHHhhhccCCCeEEEEEecCCCccccchhcHHHHHHHHHHhhhhccc-c-eeccch-hhHHHHHHHHhcCC
Q 047161 131 VEMNSRLKKLRLLLDAESRDVRMIGICGMGGVELSEKDGLIALQKQLLSKTLMEID-I-EIRNDF-DGIKMIKRELRRRN 207 (720)
Q Consensus 131 vG~~~~~~~i~~~L~~~~~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~~~-~-~~~~~~-~~~~~l~~~l~~kr 207 (720)
||....++++.+.+..-...-.-|-|+|..|. +...+.+.|-.. ..... . ...+.. ...+.+.+ -+.
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~Gt------GK~~~A~~lh~~-~~~~~~~~~~~~~~~~~~~~l~~---a~~ 70 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGT------GKSLLARALHRY-SGRANGPFIVIDCASLPAELLEQ---AKG 70 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-EEEECCTTS------SHHHHHHCCHHT-TTTCCS-CCCCCHHCTCHHHHHH---CTT
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCC------CHHHHHHHHHhh-cCccCCCeEEechhhCcHHHHHH---cCC
Confidence 56667777777666433333344678999998 222222222221 11100 0 000111 11121222 266
Q ss_pred eEEEEecCCcHH--HHHHHhccCCC-CCCCCeEEEEcCC
Q 047161 208 VLVVIDDAVHIR--QLNRLAGKHSW-FGSGSRIIIPTRD 243 (720)
Q Consensus 208 ~LlVLDdv~~~~--~~~~l~~~~~~-~~~gsrIivTTR~ 243 (720)
--++++|++... ....+...+.. .....|+|.||+.
T Consensus 71 gtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~RlI~ss~~ 109 (138)
T PF14532_consen 71 GTLYLKNIDRLSPEAQRRLLDLLKRQERSNVRLIASSSQ 109 (138)
T ss_dssp SEEEEECGCCS-HHHHHHHHHHHHHCTTTTSEEEEEECC
T ss_pred CEEEECChHHCCHHHHHHHHHHHHhcCCCCeEEEEEeCC
Confidence 668899997543 33333333321 1467799999873
No 241
>PRK06835 DNA replication protein DnaC; Validated
Probab=36.49 E-value=1.1e+02 Score=31.93 Aligned_cols=84 Identities=19% Similarity=0.123 Sum_probs=40.7
Q ss_pred EEEEEecCCCccccchhcHHHHHHHHHHhhhhcc-cceeccchhhHHHHHH--------------HHhcCCeEEEEecCC
Q 047161 152 RMIGICGMGGVELSEKDGLIALQKQLLSKTLMEI-DIEIRNDFDGIKMIKR--------------ELRRRNVLVVIDDAV 216 (720)
Q Consensus 152 ~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~~-~~~~~~~~~~~~~l~~--------------~l~~kr~LlVLDdv~ 216 (720)
.-+.++|..|+ |..++...|...+.... .+-..+..++...++. .+. .-=||||||+.
T Consensus 184 ~~Lll~G~~Gt------GKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l~-~~DLLIIDDlG 256 (329)
T PRK06835 184 ENLLFYGNTGT------GKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDLLI-NCDLLIIDDLG 256 (329)
T ss_pred CcEEEECCCCC------cHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHHhc-cCCEEEEeccC
Confidence 56889999998 44444555554433221 1111222233333322 222 33579999994
Q ss_pred cH----HHHHHHhccCCCC-CCCCeEEEEcC
Q 047161 217 HI----RQLNRLAGKHSWF-GSGSRIIIPTR 242 (720)
Q Consensus 217 ~~----~~~~~l~~~~~~~-~~gsrIivTTR 242 (720)
.. ...+.+...+... ..|-.+||||.
T Consensus 257 ~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSN 287 (329)
T PRK06835 257 TEKITEFSKSELFNLINKRLLRQKKMIISTN 287 (329)
T ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCEEEECC
Confidence 32 2122333322211 23456888886
No 242
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=36.01 E-value=1.2e+02 Score=25.94 Aligned_cols=23 Identities=9% Similarity=0.231 Sum_probs=15.0
Q ss_pred HHHHHHhcCC-eEEEEecCCcHHH
Q 047161 198 MIKRELRRRN-VLVVIDDAVHIRQ 220 (720)
Q Consensus 198 ~l~~~l~~kr-~LlVLDdv~~~~~ 220 (720)
.+.+..+..+ .+|++|++.....
T Consensus 69 ~~~~~~~~~~~~viiiDei~~~~~ 92 (148)
T smart00382 69 LALALARKLKPDVLILDEITSLLD 92 (148)
T ss_pred HHHHHHHhcCCCEEEEECCcccCC
Confidence 3444444444 9999999987543
No 243
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=35.18 E-value=46 Score=39.34 Aligned_cols=112 Identities=18% Similarity=0.233 Sum_probs=59.5
Q ss_pred cCCeEEEEecCCc---HHHHH----HHhccCCCCCCCCeEEEEcCChhhhhhcccc-ceEecCCCCHH-HHHHHHHHHhc
Q 047161 205 RRNVLVVIDDAVH---IRQLN----RLAGKHSWFGSGSRIIIPTRDEHLLRTLRVD-GVYKVEKLDDD-EALELFNKRAF 275 (720)
Q Consensus 205 ~kr~LlVLDdv~~---~~~~~----~l~~~~~~~~~gsrIivTTR~~~v~~~~~~~-~~~~l~~L~~~-~s~~Lf~~~af 275 (720)
.++-|+++|..-. ...-. .+...+. ..|+.+|+||-...+....... .+... .+..+ +... |..+.-
T Consensus 401 ~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~--~~g~~viitTH~~eL~~~~~~~~~v~~~-~~~~d~~~l~-p~Ykl~ 476 (771)
T TIGR01069 401 TENSLVLFDELGAGTDPDEGSALAISILEYLL--KQNAQVLITTHYKELKALMYNNEGVENA-SVLFDEETLS-PTYKLL 476 (771)
T ss_pred CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHH--hcCCEEEEECChHHHHHHhcCCCCeEEe-EEEEcCCCCc-eEEEEC
Confidence 3789999999863 22222 2223332 3588999999998875432111 11110 00101 1100 111111
Q ss_pred CCCCCchHHHHHHHHHHHhCCCchHHHHhhhhccCCCHHHHHHHHhhhh
Q 047161 276 DGQPSKDYVELIKRIVKYADGLPFALETLGSVLFGRSVDGWRSTLERLN 324 (720)
Q Consensus 276 ~~~~~~~~~~~~~~i~~~c~glPLai~~~g~~l~~k~~~~W~~~l~~l~ 324 (720)
.+.+. ...|-.|++++ |+|-.+..-|..+.+....+.+.++.++.
T Consensus 477 ~G~~g---~S~a~~iA~~~-Glp~~ii~~A~~~~~~~~~~~~~li~~L~ 521 (771)
T TIGR01069 477 KGIPG---ESYAFEIAQRY-GIPHFIIEQAKTFYGEFKEEINVLIEKLS 521 (771)
T ss_pred CCCCC---CcHHHHHHHHh-CcCHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 11222 22366677766 89999888888887655556666666543
No 244
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=35.14 E-value=3.1e+02 Score=28.64 Aligned_cols=92 Identities=15% Similarity=0.144 Sum_probs=61.1
Q ss_pred cCCeEEEEecCCcH--HHHHHHhccCCCCCCCCeEEEEcCCh-hhhhhccc-cceEecCCCCHHHHHHHHHHHhcCCCCC
Q 047161 205 RRNVLVVIDDAVHI--RQLNRLAGKHSWFGSGSRIIIPTRDE-HLLRTLRV-DGVYKVEKLDDDEALELFNKRAFDGQPS 280 (720)
Q Consensus 205 ~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIivTTR~~-~v~~~~~~-~~~~~l~~L~~~~s~~Lf~~~af~~~~~ 280 (720)
+++=.+|+|+++.. .....|...+..-.++..+|++|.+. .+...... -..+.+.+++.++..+.+...+..
T Consensus 106 g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~~~~~~~~~~~~~~~~L~~~~~~---- 181 (325)
T PRK06871 106 GGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQTWLIHPPEEQQALDWLQAQSSA---- 181 (325)
T ss_pred CCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhceEEeCCCCCHHHHHHHHHHHhcc----
Confidence 45556779999865 34677777666556677777777654 55544332 247899999999999888765311
Q ss_pred chHHHHHHHHHHHhCCCchHHH
Q 047161 281 KDYVELIKRIVKYADGLPFALE 302 (720)
Q Consensus 281 ~~~~~~~~~i~~~c~glPLai~ 302 (720)
+. ..+...+..++|.|+.+.
T Consensus 182 ~~--~~~~~~~~l~~g~p~~A~ 201 (325)
T PRK06871 182 EI--SEILTALRINYGRPLLAL 201 (325)
T ss_pred Ch--HHHHHHHHHcCCCHHHHH
Confidence 11 124566788999996443
No 245
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=34.82 E-value=5.8e+02 Score=27.03 Aligned_cols=185 Identities=16% Similarity=0.257 Sum_probs=107.9
Q ss_pred CCccccchhHHHHHHhhhc-----------cCCCeEEEEEecCCCccccchhcHHHHHHHHHHhhhhcccceec------
Q 047161 128 DDLVEMNSRLKKLRLLLDA-----------ESRDVRMIGICGMGGVELSEKDGLIALQKQLLSKTLMEIDIEIR------ 190 (720)
Q Consensus 128 ~~~vG~~~~~~~i~~~L~~-----------~~~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~~~~~~~------ 190 (720)
.++=|.++++++|.+-... +-+..+=|-.||.+|. +..-+.+.+.++ .........
T Consensus 151 ~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGT------GKTLLAkAVA~~-T~AtFIrvvgSElVq 223 (406)
T COG1222 151 EDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGT------GKTLLAKAVANQ-TDATFIRVVGSELVQ 223 (406)
T ss_pred hhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCC------cHHHHHHHHHhc-cCceEEEeccHHHHH
Confidence 4466788888888765431 1123344668999998 334444444444 222222221
Q ss_pred -cchhhHHHHHHHH----hcCCeEEEEecCCcH--------------HH--HHHHhccCCCCCCC--CeEEEEcCChhhh
Q 047161 191 -NDFDGIKMIKREL----RRRNVLVVIDDAVHI--------------RQ--LNRLAGKHSWFGSG--SRIIIPTRDEHLL 247 (720)
Q Consensus 191 -~~~~~~~~l~~~l----~~kr~LlVLDdv~~~--------------~~--~~~l~~~~~~~~~g--srIivTTR~~~v~ 247 (720)
-..++...+|+.+ ......|.+|.++.. -| .-+|...++.|.+. -|||..|.-.+++
T Consensus 224 KYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~D~L 303 (406)
T COG1222 224 KYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRPDIL 303 (406)
T ss_pred HHhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecCCcccc
Confidence 1113344455544 256788888988632 11 44566666666553 4788888766554
Q ss_pred hh-----ccccceEecCCCCHHHHHHHHHHHhcCC--CCCchHHHHHHHHHHHhCCCc----hHHHHhhhhcc--C-C--
Q 047161 248 RT-----LRVDGVYKVEKLDDDEALELFNKRAFDG--QPSKDYVELIKRIVKYADGLP----FALETLGSVLF--G-R-- 311 (720)
Q Consensus 248 ~~-----~~~~~~~~l~~L~~~~s~~Lf~~~af~~--~~~~~~~~~~~~i~~~c~glP----Lai~~~g~~l~--~-k-- 311 (720)
.- -..+..++++.-+.+.-.++|.-|+-+. ...-+++.+ ++.|.|.- -|+.+=|+++. . +
T Consensus 304 DPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e~l----a~~~~g~sGAdlkaictEAGm~AiR~~R~~ 379 (406)
T COG1222 304 DPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLELL----ARLTEGFSGADLKAICTEAGMFAIRERRDE 379 (406)
T ss_pred ChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHHHH----HHhcCCCchHHHHHHHHHHhHHHHHhccCe
Confidence 43 3567899999778888888999888766 444566544 45566554 34445566654 2 2
Q ss_pred -CHHHHHHHHhhh
Q 047161 312 -SVDGWRSTLERL 323 (720)
Q Consensus 312 -~~~~W~~~l~~l 323 (720)
+.++..++.++.
T Consensus 380 Vt~~DF~~Av~KV 392 (406)
T COG1222 380 VTMEDFLKAVEKV 392 (406)
T ss_pred ecHHHHHHHHHHH
Confidence 455666665543
No 246
>PF08357 SEFIR: SEFIR domain; InterPro: IPR013568 This domain is found in IL17 receptors (IL17Rs, e.g. Q60943 from SWISSPROT) and SEF proteins (e.g. Q8QHJ9 from SWISSPROT). The latter are feedback inhibitors of FGF signalling and are also thought to be receptors. Due to its similarity to the TIR domain (IPR000157 from INTERPRO), the SEFIR region is thought to be involved in homotypic interactions with other SEFIR/TIR-domain-containing proteins. Thus, SEFs and IL17Rs may be involved in TOLL/IL1R-like signalling pathways [].
Probab=34.56 E-value=32 Score=31.14 Aligned_cols=40 Identities=23% Similarity=0.335 Sum_probs=33.5
Q ss_pred CceEeecCCCCCC--CCcccHHHHHHHHhccceeEEeccCcc
Q 047161 1 GVKIFEDHKELER--GKAVSPGLFKAIEESRFSVVVFSRNYA 40 (720)
Q Consensus 1 gi~~f~d~~~l~~--g~~~~~~l~~ai~~s~~~ivv~S~~ya 40 (720)
||.|..|-++... +.....=+.++|+++...|||.|+.|.
T Consensus 30 g~~V~lD~~~~~~i~~~g~~~W~~~~~~~ad~Vliv~S~~~~ 71 (150)
T PF08357_consen 30 GIDVILDQWELNEIARQGPPRWMERQIREADKVLIVCSPGYK 71 (150)
T ss_pred CCceeecHHhhcccccCCHHHHHHHHHhcCCEEEEEeccchh
Confidence 7899999877744 666777899999999999999998663
No 247
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=34.09 E-value=95 Score=35.64 Aligned_cols=86 Identities=17% Similarity=0.224 Sum_probs=55.7
Q ss_pred CCCCccccchhHHHHHHhhh----ccCCCeEEEEEecCCCccccchhcHHHHHHHHHHhhhhccccee-----ccchh--
Q 047161 126 ILDDLVEMNSRLKKLRLLLD----AESRDVRMIGICGMGGVELSEKDGLIALQKQLLSKTLMEIDIEI-----RNDFD-- 194 (720)
Q Consensus 126 ~~~~~vG~~~~~~~i~~~L~----~~~~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~~~~~~-----~~~~~-- 194 (720)
.+++-+|+++-+++|.+++- .++-+=++++.+|..|+ +..++.+.|.+. ++++.... .+..+
T Consensus 409 LdeDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGV------GKTSI~kSIA~A-LnRkFfRfSvGG~tDvAeIk 481 (906)
T KOG2004|consen 409 LDEDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGV------GKTSIAKSIARA-LNRKFFRFSVGGMTDVAEIK 481 (906)
T ss_pred hcccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCC------CcccHHHHHHHH-hCCceEEEeccccccHHhhc
Confidence 34668999999999999884 34556689999999999 455666667666 33332211 11111
Q ss_pred ---------hHHHHHHHHh---cCCeEEEEecCCcH
Q 047161 195 ---------GIKMIKRELR---RRNVLVVIDDAVHI 218 (720)
Q Consensus 195 ---------~~~~l~~~l~---~kr~LlVLDdv~~~ 218 (720)
...++-++|+ -..=|+.+|.|+..
T Consensus 482 GHRRTYVGAMPGkiIq~LK~v~t~NPliLiDEvDKl 517 (906)
T KOG2004|consen 482 GHRRTYVGAMPGKIIQCLKKVKTENPLILIDEVDKL 517 (906)
T ss_pred ccceeeeccCChHHHHHHHhhCCCCceEEeehhhhh
Confidence 1234555664 34568888998754
No 248
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=33.65 E-value=8.9e+02 Score=28.88 Aligned_cols=142 Identities=12% Similarity=0.156 Sum_probs=73.9
Q ss_pred CCCccccchhHHHHHHhhhc----cCCCeEEEEEecCCCccccchhcHHHHHHHHHHhhhhccccee-----ccchh---
Q 047161 127 LDDLVEMNSRLKKLRLLLDA----ESRDVRMIGICGMGGVELSEKDGLIALQKQLLSKTLMEIDIEI-----RNDFD--- 194 (720)
Q Consensus 127 ~~~~vG~~~~~~~i~~~L~~----~~~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~~~~~~-----~~~~~--- 194 (720)
+.+.+|.+..+++|.++|.. +...-.++.++|..|++.+ .+.+.+... ++...... .+..+
T Consensus 321 ~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKT------tl~~~ia~~-l~~~~~~i~~~~~~d~~~i~g 393 (784)
T PRK10787 321 DTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKT------SLGQSIAKA-TGRKYVRMALGGVRDEAEIRG 393 (784)
T ss_pred hhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHH------HHHHHHHHH-hCCCEEEEEcCCCCCHHHhcc
Confidence 35689999999999988852 1234567999999999433 333333322 11111100 01000
Q ss_pred --------hHHHHHHHHhc---CCeEEEEecCCcHHH------HHHHhccCCCC--------------C-CCCeEEEEcC
Q 047161 195 --------GIKMIKRELRR---RNVLVVIDDAVHIRQ------LNRLAGKHSWF--------------G-SGSRIIIPTR 242 (720)
Q Consensus 195 --------~~~~l~~~l~~---kr~LlVLDdv~~~~~------~~~l~~~~~~~--------------~-~gsrIivTTR 242 (720)
....+.+.++. +.-+++||.++.... ...+...+... . ...-+|.||.
T Consensus 394 ~~~~~~g~~~G~~~~~l~~~~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i~TaN 473 (784)
T PRK10787 394 HRRTYIGSMPGKLIQKMAKVGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSN 473 (784)
T ss_pred chhccCCCCCcHHHHHHHhcCCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceEEEEcCC
Confidence 01122222322 344788999975421 23343333210 1 2223455554
Q ss_pred Chhhhhhc-cccceEecCCCCHHHHHHHHHHHhc
Q 047161 243 DEHLLRTL-RVDGVYKVEKLDDDEALELFNKRAF 275 (720)
Q Consensus 243 ~~~v~~~~-~~~~~~~l~~L~~~~s~~Lf~~~af 275 (720)
...+-... +--.++++.+++.+|-.++..++..
T Consensus 474 ~~~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L~ 507 (784)
T PRK10787 474 SMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHLL 507 (784)
T ss_pred CCCCCHHHhcceeeeecCCCCHHHHHHHHHHhhh
Confidence 43332111 1123788999999998888877653
No 249
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=33.47 E-value=52 Score=30.31 Aligned_cols=49 Identities=10% Similarity=0.122 Sum_probs=30.8
Q ss_pred HHHHHHHh-cCCeEEEEecCCcHHH-----HHHHhccCCCCCCCCeEEEEcCChh
Q 047161 197 KMIKRELR-RRNVLVVIDDAVHIRQ-----LNRLAGKHSWFGSGSRIIIPTRDEH 245 (720)
Q Consensus 197 ~~l~~~l~-~kr~LlVLDdv~~~~~-----~~~l~~~~~~~~~gsrIivTTR~~~ 245 (720)
+..++.++ ++-=|+|||++-..-. .+.+...+.....+.-||+|.|+..
T Consensus 85 ~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p 139 (159)
T cd00561 85 AFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 34444444 3556999999865422 3444444444456778999999853
No 250
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=33.19 E-value=6e+02 Score=26.72 Aligned_cols=35 Identities=23% Similarity=0.249 Sum_probs=21.0
Q ss_pred CCccccchhHHHHHHhhhcc--CCCeEEEEEecCCCc
Q 047161 128 DDLVEMNSRLKKLRLLLDAE--SRDVRMIGICGMGGV 162 (720)
Q Consensus 128 ~~~vG~~~~~~~i~~~L~~~--~~~~~vi~I~G~gGi 162 (720)
..++|..++..++-.++... .++---|.|+|..|.
T Consensus 24 ~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgs 60 (408)
T KOG2228|consen 24 INLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGS 60 (408)
T ss_pred cceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCC
Confidence 45788877777777777421 122333456677776
No 251
>COG2236 Predicted phosphoribosyltransferases [General function prediction only]
Probab=32.49 E-value=55 Score=31.13 Aligned_cols=16 Identities=44% Similarity=0.646 Sum_probs=12.3
Q ss_pred HhcCCeEEEEecCCcHH
Q 047161 203 LRRRNVLVVIDDAVHIR 219 (720)
Q Consensus 203 l~~kr~LlVLDdv~~~~ 219 (720)
++|||+||| |||.+..
T Consensus 85 l~GkkVLIV-DDI~DTG 100 (192)
T COG2236 85 LSGKKVLIV-DDIVDTG 100 (192)
T ss_pred cCCCeEEEE-ecccCch
Confidence 789999776 8887653
No 252
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=30.58 E-value=3.7e+02 Score=31.84 Aligned_cols=37 Identities=14% Similarity=0.111 Sum_probs=26.2
Q ss_pred CCccccchhHHHHHHhhhcc-------CCCeEEEEEecCCCccc
Q 047161 128 DDLVEMNSRLKKLRLLLDAE-------SRDVRMIGICGMGGVEL 164 (720)
Q Consensus 128 ~~~vG~~~~~~~i~~~L~~~-------~~~~~vi~I~G~gGi~v 164 (720)
..++|-+..++.|...+... ...+..+-++|..|++.
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGK 501 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGK 501 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCH
Confidence 45899998888887776421 12255788999999943
No 253
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=30.50 E-value=6.2e+02 Score=26.07 Aligned_cols=134 Identities=17% Similarity=0.094 Sum_probs=70.6
Q ss_pred chhcHHHHHHHHHHhhhhcccceeccchhhHHHHHHHHhc-CCeEEEEecCCcH------HH---HHHHhccCCCCCCCC
Q 047161 166 EKDGLIALQKQLLSKTLMEIDIEIRNDFDGIKMIKRELRR-RNVLVVIDDAVHI------RQ---LNRLAGKHSWFGSGS 235 (720)
Q Consensus 166 ~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~l~~-kr~LlVLDdv~~~------~~---~~~l~~~~~~~~~gs 235 (720)
...+...+...|+..+ +...............+...++. +-=+||+|.+.+. +| +..| ..+.+.-.=+
T Consensus 105 ~~p~~~~~Y~~IL~~l-gaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~L-K~L~NeL~ip 182 (302)
T PF05621_consen 105 PEPDERRFYSAILEAL-GAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNAL-KFLGNELQIP 182 (302)
T ss_pred CCCChHHHHHHHHHHh-CcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHH-HHHhhccCCC
Confidence 3467788889999884 33222223444444555555543 3446888999764 11 2222 2222223345
Q ss_pred eEEEEcCChhhhhhccc-----cceEecCCCCHHHHHHHHHHHhcCC----CCCc--hHHHHHHHHHHHhCCCchHHH
Q 047161 236 RIIIPTRDEHLLRTLRV-----DGVYKVEKLDDDEALELFNKRAFDG----QPSK--DYVELIKRIVKYADGLPFALE 302 (720)
Q Consensus 236 rIivTTR~~~v~~~~~~-----~~~~~l~~L~~~~s~~Lf~~~af~~----~~~~--~~~~~~~~i~~~c~glPLai~ 302 (720)
-|.|-|++.--+-.... -.++.++....++-+.-|- ..|.. ..++ ...+++..|...++|+.--+.
T Consensus 183 iV~vGt~~A~~al~~D~QLa~RF~~~~Lp~W~~d~ef~~LL-~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l~ 259 (302)
T PF05621_consen 183 IVGVGTREAYRALRTDPQLASRFEPFELPRWELDEEFRRLL-ASFERALPLRKPSNLASPELARRIHERSEGLIGELS 259 (302)
T ss_pred eEEeccHHHHHHhccCHHHHhccCCccCCCCCCCcHHHHHH-HHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHHH
Confidence 56666654322221111 1356777766555544332 22322 1122 346788999999999874433
No 254
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=29.19 E-value=8.3e+02 Score=28.78 Aligned_cols=168 Identities=14% Similarity=0.165 Sum_probs=98.0
Q ss_pred CCCCccccchhHHHHHHhhh---c-------cCCCeEEEEEecCCCccccchhcHHHHHHHHHHhhhhccccee------
Q 047161 126 ILDDLVEMNSRLKKLRLLLD---A-------ESRDVRMIGICGMGGVELSEKDGLIALQKQLLSKTLMEIDIEI------ 189 (720)
Q Consensus 126 ~~~~~vG~~~~~~~i~~~L~---~-------~~~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~~~~~~------ 189 (720)
...++.|.|+.+++|.++.. . +..-.+=+-++|..|. +..-+.+.+... .+-.....
T Consensus 309 ~FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGT------GKTLLAKAiAGE-AgVPF~svSGSEFv 381 (774)
T KOG0731|consen 309 KFKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGT------GKTLLAKAIAGE-AGVPFFSVSGSEFV 381 (774)
T ss_pred ccccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCC------cHHHHHHHHhcc-cCCceeeechHHHH
Confidence 34679999988887766542 1 1122344678999998 222222322222 11000000
Q ss_pred -ccchhhHHHHHHHHh----cCCeEEEEecCCcH-----------------HHHHHHhccCCCCCCCCe--EEEEcCChh
Q 047161 190 -RNDFDGIKMIKRELR----RRNVLVVIDDAVHI-----------------RQLNRLAGKHSWFGSGSR--IIIPTRDEH 245 (720)
Q Consensus 190 -~~~~~~~~~l~~~l~----~kr~LlVLDdv~~~-----------------~~~~~l~~~~~~~~~gsr--IivTTR~~~ 245 (720)
.-...+...++..+. +....|.+|+++.. ..+.++....+.+..++. ++-+|+..+
T Consensus 382 E~~~g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tnr~d 461 (774)
T KOG0731|consen 382 EMFVGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATNRPD 461 (774)
T ss_pred HHhcccchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEeccCCcc
Confidence 000111333444443 45567888876531 116677766666655553 344666666
Q ss_pred hhhhc-----cccceEecCCCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHhCCCchHH
Q 047161 246 LLRTL-----RVDGVYKVEKLDDDEALELFNKRAFDGQPSKDYVELIKRIVKYADGLPFAL 301 (720)
Q Consensus 246 v~~~~-----~~~~~~~l~~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~i~~~c~glPLai 301 (720)
+.... ..+..+.+..-+..+..++|..|+-......+..++++ ++...-|++=|.
T Consensus 462 ~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~-~a~~t~gf~gad 521 (774)
T KOG0731|consen 462 ILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSK-LASLTPGFSGAD 521 (774)
T ss_pred ccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHH-HHhcCCCCcHHH
Confidence 65432 45778889999999999999999876644456667777 888888887553
No 255
>PF10137 TIR-like: Predicted nucleotide-binding protein containing TIR-like domain; InterPro: IPR019302 This entry represents a TIR-like domain found in a family of prokaryotic predicted nucleotide-binding proteins. Their exact function has not, as yet, been defined.
Probab=28.75 E-value=65 Score=28.28 Aligned_cols=27 Identities=22% Similarity=0.412 Sum_probs=23.8
Q ss_pred CCCCCcccHHHHHHHHhccceeEEecc
Q 047161 11 LERGKAVSPGLFKAIEESRFSVVVFSR 37 (720)
Q Consensus 11 l~~g~~~~~~l~~ai~~s~~~ivv~S~ 37 (720)
-..|..+-+.+.+++.++..|||++++
T Consensus 34 ~~~g~tiie~le~~~~~~~faIvl~Tp 60 (125)
T PF10137_consen 34 PNLGQTIIEKLEEAADSVDFAIVLFTP 60 (125)
T ss_pred CCCCCchHHHHHHHhccCCEEEEEEcc
Confidence 367888888999999999999999997
No 256
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=28.71 E-value=0.86 Score=50.13 Aligned_cols=170 Identities=18% Similarity=0.140 Sum_probs=0.0
Q ss_pred hhHHHHhccCCCCcEEeccCCCCCcc----cCCCCCCC-CCCCEEeccCCCCCc----ccCcCcCCCCCCCEEeccCccc
Q 047161 486 ESLQKLIELLTGLVFLNLNDCKILVR----LPSTINGW-KSLRTVNLSRCSKLE----NMPESLGQMESLEELDVSGTVI 556 (720)
Q Consensus 486 ~~l~~~i~~l~~L~~L~Ls~n~~~~~----lp~~i~~l-~~L~~L~L~~~~~l~----~lp~~~~~L~~L~~L~L~~n~l 556 (720)
..+-..+....+|..|++++|.+... +-..+... ..|++|++..|.... .+...+.....|+.++++.|.+
T Consensus 105 ~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l 184 (478)
T KOG4308|consen 105 EELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGL 184 (478)
T ss_pred HHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhccc
Q ss_pred cc-----CCccccC---CcCCceEEEeecCCCCCC----CCCccccccc-ccccccCCCCcccccCCC----CCCC-CCC
Q 047161 557 RQ-----PVPSIFF---PSRILKVYLFVDTRDHRT----SSSSWHLWFP-FSLMQKGSSDSMALMLPS----LSGL-CSL 618 (720)
Q Consensus 557 ~~-----~~~~~~~---~~~~L~~L~l~~~~~~~~----~~~~~~~l~~-l~~l~l~~~~~~~~~~~~----l~~l-~~L 618 (720)
.. .+..... ...++++|.+.+|..... ....+..... +..+++.+|...+..... +..+ ..+
T Consensus 185 ~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l 264 (478)
T KOG4308|consen 185 IELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETL 264 (478)
T ss_pred chhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhh
Q ss_pred CcccccEEECCCCCCccccccccCCCCCceeeccccc
Q 047161 619 TELNLKKLNLRRNNFVSLRGTINHLPKFKHLKLDDCK 655 (720)
Q Consensus 619 ~~L~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~ 655 (720)
+.+.++...+..-....+...+..+++++.|.+++|+
T Consensus 265 ~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~ 301 (478)
T KOG4308|consen 265 RVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNP 301 (478)
T ss_pred hhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCc
No 257
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=27.83 E-value=4.4e+02 Score=27.03 Aligned_cols=56 Identities=23% Similarity=0.258 Sum_probs=34.6
Q ss_pred cCCeEEEEecCCcHHH--HHHHhccCCCCCCCCeEEEEcCC-hhhhhhccc-cceEecCC
Q 047161 205 RRNVLVVIDDAVHIRQ--LNRLAGKHSWFGSGSRIIIPTRD-EHLLRTLRV-DGVYKVEK 260 (720)
Q Consensus 205 ~kr~LlVLDdv~~~~~--~~~l~~~~~~~~~gsrIivTTR~-~~v~~~~~~-~~~~~l~~ 260 (720)
+++-++++|+++.... -..+...........++|++|.+ ..+...... -..+++.+
T Consensus 108 ~~~kviiidead~mt~~A~nallk~lEep~~~~~~il~~n~~~~il~tI~SRc~~i~f~~ 167 (325)
T COG0470 108 GGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFILITNDPSKILPTIRSRCQRIRFKP 167 (325)
T ss_pred CCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEEEEcCChhhccchhhhcceeeecCC
Confidence 5677889999987533 55666666555678888888873 344333222 12455555
No 258
>PRK04132 replication factor C small subunit; Provisional
Probab=27.50 E-value=6.1e+02 Score=30.42 Aligned_cols=95 Identities=15% Similarity=0.198 Sum_probs=61.8
Q ss_pred CCeEEEEecCCcH--HHHHHHhccCCCCCCCCeEEEEcCCh-hhhhhccc-cceEecCCCCHHHHHHHHHHHhcCCCCCc
Q 047161 206 RNVLVVIDDAVHI--RQLNRLAGKHSWFGSGSRIIIPTRDE-HLLRTLRV-DGVYKVEKLDDDEALELFNKRAFDGQPSK 281 (720)
Q Consensus 206 kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIivTTR~~-~v~~~~~~-~~~~~l~~L~~~~s~~Lf~~~af~~~~~~ 281 (720)
+.-++|+|+++.. ++.+.|...+.......++|.+|.+. .+...... ...+++++++.++-.+.+.+.+-.....-
T Consensus 630 ~~KVvIIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~i 709 (846)
T PRK04132 630 SFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLEL 709 (846)
T ss_pred CCEEEEEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCCC
Confidence 3468999999864 46777777776555667777666543 44333322 24889999999988887776553221111
Q ss_pred hHHHHHHHHHHHhCCCchHH
Q 047161 282 DYVELIKRIVKYADGLPFAL 301 (720)
Q Consensus 282 ~~~~~~~~i~~~c~glPLai 301 (720)
+ .+....+++.|+|-+-.+
T Consensus 710 ~-~e~L~~Ia~~s~GDlR~A 728 (846)
T PRK04132 710 T-EEGLQAILYIAEGDMRRA 728 (846)
T ss_pred C-HHHHHHHHHHcCCCHHHH
Confidence 1 345678899999987443
No 259
>PRK08939 primosomal protein DnaI; Reviewed
Probab=26.61 E-value=1.5e+02 Score=30.73 Aligned_cols=37 Identities=8% Similarity=0.081 Sum_probs=21.0
Q ss_pred CCeEEEEecCCcH--HHHH--HHhccC-CCC-CCCCeEEEEcC
Q 047161 206 RNVLVVIDDAVHI--RQLN--RLAGKH-SWF-GSGSRIIIPTR 242 (720)
Q Consensus 206 kr~LlVLDdv~~~--~~~~--~l~~~~-~~~-~~gsrIivTTR 242 (720)
+-=||||||+.-+ ..|. .+.... ... ..+-.+|+||.
T Consensus 217 ~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSN 259 (306)
T PRK08939 217 EAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSN 259 (306)
T ss_pred CCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECC
Confidence 4567999999643 3353 343332 222 24556788885
No 260
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=26.26 E-value=5.7e+02 Score=24.26 Aligned_cols=37 Identities=27% Similarity=0.465 Sum_probs=22.6
Q ss_pred CCeEEEEecCCcH--HHHHHHhccCCCCCCCCeEEEEcCCh
Q 047161 206 RNVLVVIDDAVHI--RQLNRLAGKHSWFGSGSRIIIPTRDE 244 (720)
Q Consensus 206 kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIivTTR~~ 244 (720)
++-+||+|++.-. .++..+...... .|.|+|+.=-..
T Consensus 93 ~~~vliVDEasmv~~~~~~~ll~~~~~--~~~klilvGD~~ 131 (196)
T PF13604_consen 93 KKDVLIVDEASMVDSRQLARLLRLAKK--SGAKLILVGDPN 131 (196)
T ss_dssp STSEEEESSGGG-BHHHHHHHHHHS-T---T-EEEEEE-TT
T ss_pred cccEEEEecccccCHHHHHHHHHHHHh--cCCEEEEECCcc
Confidence 3468999998854 457777776652 588888755433
No 261
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=25.61 E-value=5.7e+02 Score=27.12 Aligned_cols=116 Identities=18% Similarity=0.287 Sum_probs=64.9
Q ss_pred cCCCeEEEEEecCCCccccchhcHHHHHHHHHHhhhhccc---cee-------ccchhhHHHHH--HHHhcCCeEEEEec
Q 047161 147 ESRDVRMIGICGMGGVELSEKDGLIALQKQLLSKTLMEID---IEI-------RNDFDGIKMIK--RELRRRNVLVVIDD 214 (720)
Q Consensus 147 ~~~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~~~---~~~-------~~~~~~~~~l~--~~l~~kr~LlVLDd 214 (720)
+.+.+..+-.||..|. +...+.+-|... ..... .+. .+.....+.-+ ..+.++|-.|.+|.
T Consensus 158 eq~~ipSmIlWGppG~------GKTtlArlia~t-sk~~SyrfvelSAt~a~t~dvR~ife~aq~~~~l~krkTilFiDE 230 (554)
T KOG2028|consen 158 EQNRIPSMILWGPPGT------GKTTLARLIAST-SKKHSYRFVELSATNAKTNDVRDIFEQAQNEKSLTKRKTILFIDE 230 (554)
T ss_pred HcCCCCceEEecCCCC------chHHHHHHHHhh-cCCCceEEEEEeccccchHHHHHHHHHHHHHHhhhcceeEEEeHH
Confidence 3567777889999998 333444444433 11110 111 11112222222 22457888999999
Q ss_pred CCcH--HHHHHHhccCCCCCCCCeEEE--EcCChhhhh---hccccceEecCCCCHHHHHHHHHH
Q 047161 215 AVHI--RQLNRLAGKHSWFGSGSRIII--PTRDEHLLR---TLRVDGVYKVEKLDDDEALELFNK 272 (720)
Q Consensus 215 v~~~--~~~~~l~~~~~~~~~gsrIiv--TTR~~~v~~---~~~~~~~~~l~~L~~~~s~~Lf~~ 272 (720)
|..- .|-+.+. |.-..|+-++| ||.+....- ...--.++-++.|..++-..++.+
T Consensus 231 iHRFNksQQD~fL---P~VE~G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~v~~iL~r 292 (554)
T KOG2028|consen 231 IHRFNKSQQDTFL---PHVENGDITLIGATTENPSFQLNAALLSRCRVFVLEKLPVNAVVTILMR 292 (554)
T ss_pred hhhhhhhhhhccc---ceeccCceEEEecccCCCccchhHHHHhccceeEeccCCHHHHHHHHHH
Confidence 9643 3333333 33456776665 776654311 111124788999999998888877
No 262
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=25.53 E-value=4.8e+02 Score=27.36 Aligned_cols=93 Identities=18% Similarity=0.168 Sum_probs=60.9
Q ss_pred cCCeEEEEecCCcH--HHHHHHhccCCCCCCCCeEEEEcCC-hhhhhhccc-cceEecCCCCHHHHHHHHHHHhcCCCCC
Q 047161 205 RRNVLVVIDDAVHI--RQLNRLAGKHSWFGSGSRIIIPTRD-EHLLRTLRV-DGVYKVEKLDDDEALELFNKRAFDGQPS 280 (720)
Q Consensus 205 ~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIivTTR~-~~v~~~~~~-~~~~~l~~L~~~~s~~Lf~~~af~~~~~ 280 (720)
+++=.+|+|+++.. ..-..|...+..-.+++.+|.+|.+ ..+...... -..+.+.+++.+++.+...... + .+
T Consensus 107 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSRCq~~~~~~~~~~~~~~~L~~~~-~--~~ 183 (334)
T PRK07993 107 GGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSRCRLHYLAPPPEQYALTWLSREV-T--MS 183 (334)
T ss_pred CCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhccccccCCCCCHHHHHHHHHHcc-C--CC
Confidence 55567888988754 3466677666655567777777766 456555332 2367899999999988775432 1 11
Q ss_pred chHHHHHHHHHHHhCCCchHHHH
Q 047161 281 KDYVELIKRIVKYADGLPFALET 303 (720)
Q Consensus 281 ~~~~~~~~~i~~~c~glPLai~~ 303 (720)
.+.+..++..++|.|..+..
T Consensus 184 ---~~~a~~~~~la~G~~~~Al~ 203 (334)
T PRK07993 184 ---QDALLAALRLSAGAPGAALA 203 (334)
T ss_pred ---HHHHHHHHHHcCCCHHHHHH
Confidence 12256778999999965443
No 263
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=25.03 E-value=39 Score=27.56 Aligned_cols=22 Identities=32% Similarity=0.469 Sum_probs=16.4
Q ss_pred HHHHhccceeEEeccCcccchhhh
Q 047161 23 KAIEESRFSVVVFSRNYAYSTWCL 46 (720)
Q Consensus 23 ~ai~~s~~~ivv~S~~ya~s~wcl 46 (720)
+.|.+. -|||||+.+++.+||.
T Consensus 3 ~~i~~~--~vvvf~k~~~~~~~Cp 24 (90)
T cd03028 3 KLIKEN--PVVLFMKGTPEEPRCG 24 (90)
T ss_pred hhhccC--CEEEEEcCCCCCCCCc
Confidence 344444 3799999999999884
No 264
>PF05725 FNIP: FNIP Repeat; InterPro: IPR008615 This repeat is approximately 22 residues long and is only found in Dictyostelium discoideum (Slime mould). It appears to be related to IPR001611 from INTERPRO. The alignment consists of two tandem repeats. It is termed the FNIP repeat after the pattern of conserved residues.
Probab=24.56 E-value=98 Score=21.26 Aligned_cols=30 Identities=17% Similarity=0.308 Sum_probs=17.5
Q ss_pred CCCceeecccc--ccccccCCcccccceEeeec
Q 047161 644 PKFKHLKLDDC--KRLRSLSELPSDIKKVRVHG 674 (720)
Q Consensus 644 ~~L~~L~L~~c--~~L~~lp~lp~~L~~L~l~~ 674 (720)
+++++|.+.++ +.+. ...+|++|++|.+..
T Consensus 12 ~~l~~L~~g~~fn~~i~-~~~lP~sl~~L~fg~ 43 (44)
T PF05725_consen 12 SSLKSLIFGSSFNQPIE-PGSLPNSLKSLSFGY 43 (44)
T ss_pred CCCeEEEECCccCccCC-CCccCCCceEEEeeC
Confidence 46777777332 2222 335778888887754
No 265
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=23.85 E-value=7.2e+02 Score=27.10 Aligned_cols=17 Identities=18% Similarity=0.294 Sum_probs=13.4
Q ss_pred CeEEEEEecCCCccccc
Q 047161 150 DVRMIGICGMGGVELSE 166 (720)
Q Consensus 150 ~~~vi~I~G~gGi~vs~ 166 (720)
...||.++|..|++.++
T Consensus 99 ~~~vi~lvG~~GvGKTT 115 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTT 115 (429)
T ss_pred CCeEEEEECCCCCCHHH
Confidence 36899999999995443
No 266
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=23.60 E-value=3.2e+02 Score=28.07 Aligned_cols=76 Identities=13% Similarity=0.100 Sum_probs=43.2
Q ss_pred CCCeEEEEEecCCCccccchhcHHHHHHHHHHhhh-------------hc-ccceeccchhhHHHHHHHHh-----cCCe
Q 047161 148 SRDVRMIGICGMGGVELSEKDGLIALQKQLLSKTL-------------ME-IDIEIRNDFDGIKMIKRELR-----RRNV 208 (720)
Q Consensus 148 ~~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~-------------~~-~~~~~~~~~~~~~~l~~~l~-----~kr~ 208 (720)
..+.-|++.+|-.|.+.+ .+.+-|.+.+. .. ..++....++-..+++++++ -+|-
T Consensus 107 p~KPLvLSfHG~tGTGKN------~Va~iiA~n~~~~Gl~S~~V~~fvat~hFP~~~~ie~Yk~eL~~~v~~~v~~C~rs 180 (344)
T KOG2170|consen 107 PRKPLVLSFHGWTGTGKN------YVAEIIAENLYRGGLRSPFVHHFVATLHFPHASKIEDYKEELKNRVRGTVQACQRS 180 (344)
T ss_pred CCCCeEEEecCCCCCchh------HHHHHHHHHHHhccccchhHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 456789999999998322 22222222211 11 11222333444455555554 4899
Q ss_pred EEEEecCCcH--HHHHHHhccCC
Q 047161 209 LVVIDDAVHI--RQLNRLAGKHS 229 (720)
Q Consensus 209 LlVLDdv~~~--~~~~~l~~~~~ 229 (720)
|.|+|+|+.. .-.+.|.+-++
T Consensus 181 lFIFDE~DKmp~gLld~lkpfLd 203 (344)
T KOG2170|consen 181 LFIFDEVDKLPPGLLDVLKPFLD 203 (344)
T ss_pred eEEechhhhcCHhHHHHHhhhhc
Confidence 9999999865 33666666555
No 267
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=23.54 E-value=33 Score=37.72 Aligned_cols=12 Identities=25% Similarity=0.213 Sum_probs=6.7
Q ss_pred CCCCcEEeccCC
Q 047161 495 LTGLVFLNLNDC 506 (720)
Q Consensus 495 l~~L~~L~Ls~n 506 (720)
.++|..|+|++|
T Consensus 243 apklk~L~LS~N 254 (585)
T KOG3763|consen 243 APKLKTLDLSHN 254 (585)
T ss_pred cchhheeecccc
Confidence 455555555555
No 268
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=22.75 E-value=8.8e+02 Score=25.26 Aligned_cols=84 Identities=14% Similarity=0.200 Sum_probs=46.1
Q ss_pred EEEEecCCcH--HHHHHHhccCCCCCCCCeEEEEcCCh-hhhhhccc-cceEecCCCCHHHHHHHHHHHhcCCCCCchHH
Q 047161 209 LVVIDDAVHI--RQLNRLAGKHSWFGSGSRIIIPTRDE-HLLRTLRV-DGVYKVEKLDDDEALELFNKRAFDGQPSKDYV 284 (720)
Q Consensus 209 LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIivTTR~~-~v~~~~~~-~~~~~l~~L~~~~s~~Lf~~~af~~~~~~~~~ 284 (720)
.+|+|++... ..-..+...+.....+..+|++|.+. .+...... -..+.+.+++.+++.+.+..... ...
T Consensus 116 V~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~~~----~~~-- 189 (325)
T PRK08699 116 VILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRERGV----AEP-- 189 (325)
T ss_pred EEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhcCC----CcH--
Confidence 3455777643 33333443333223456566666664 45444322 24788999999999887765311 111
Q ss_pred HHHHHHHHHhCCCchHH
Q 047161 285 ELIKRIVKYADGLPFAL 301 (720)
Q Consensus 285 ~~~~~i~~~c~glPLai 301 (720)
...+..++|-|+.+
T Consensus 190 ---~~~l~~~~g~p~~~ 203 (325)
T PRK08699 190 ---EERLAFHSGAPLFD 203 (325)
T ss_pred ---HHHHHHhCCChhhh
Confidence 11235688988643
No 269
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=22.15 E-value=99 Score=33.21 Aligned_cols=15 Identities=13% Similarity=0.643 Sum_probs=12.9
Q ss_pred hcCCeEEEEecCCcH
Q 047161 204 RRRNVLVVIDDAVHI 218 (720)
Q Consensus 204 ~~kr~LlVLDdv~~~ 218 (720)
.|++++|++|++...
T Consensus 253 ~GkdVVLlIDEitR~ 267 (415)
T TIGR00767 253 HKKDVVILLDSITRL 267 (415)
T ss_pred cCCCeEEEEEChhHH
Confidence 589999999999754
No 270
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.59 E-value=1e+03 Score=25.55 Aligned_cols=14 Identities=21% Similarity=0.349 Sum_probs=9.8
Q ss_pred CCeEEEEEecCCCc
Q 047161 149 RDVRMIGICGMGGV 162 (720)
Q Consensus 149 ~~~~vi~I~G~gGi 162 (720)
.+..||-+||.-|.
T Consensus 99 ~kpsVimfVGLqG~ 112 (483)
T KOG0780|consen 99 GKPSVIMFVGLQGS 112 (483)
T ss_pred CCCcEEEEEeccCC
Confidence 35667777777776
No 271
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=21.16 E-value=1e+02 Score=25.95 Aligned_cols=61 Identities=23% Similarity=0.129 Sum_probs=30.6
Q ss_pred EEEecCCCccccchhcHHHHHHHHHHhhhhcccceeccchhhHHHHHHHHhcCCeEEEEecCCcH
Q 047161 154 IGICGMGGVELSEKDGLIALQKQLLSKTLMEIDIEIRNDFDGIKMIKRELRRRNVLVVIDDAVHI 218 (720)
Q Consensus 154 i~I~G~gGi~vs~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVLDdv~~~ 218 (720)
|-|+|.+|++.|.-.. .+.+++++.+.......... .....+...-.+++++ +|+||++..
T Consensus 1 I~i~G~~G~GKS~l~~--~l~~~l~~~~~~~~~~~vy~-~~~~~~~w~gY~~q~v-vi~DD~~~~ 61 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAK--ELAKDLLKHIGEPTKDSVYT-RNPGDKFWDGYQGQPV-VIIDDFGQD 61 (107)
T ss_pred CEEECCCCCCHHHHHH--HHHHHHHHHhccCCCCcEEe-CCCccchhhccCCCcE-EEEeecCcc
Confidence 4589999996554322 34455555421111111111 1223334444556655 778998743
No 272
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=20.82 E-value=8.6e+02 Score=24.41 Aligned_cols=102 Identities=20% Similarity=0.270 Sum_probs=55.6
Q ss_pred hcCC-eEEEEecCCcH--HHHHHHhccCCCCCCCC---eEEEEcCCh-------hhhhhc--cccceEecCCCCHHHHHH
Q 047161 204 RRRN-VLVVIDDAVHI--RQLNRLAGKHSWFGSGS---RIIIPTRDE-------HLLRTL--RVDGVYKVEKLDDDEALE 268 (720)
Q Consensus 204 ~~kr-~LlVLDdv~~~--~~~~~l~~~~~~~~~gs---rIivTTR~~-------~v~~~~--~~~~~~~l~~L~~~~s~~ 268 (720)
++|| +.++.||..+. +.++.++--......+| +|+..-.-+ .+.+.. .++-.|++++++.++.-.
T Consensus 128 ~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~~~t~~ 207 (269)
T COG3267 128 KGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTEAETGL 207 (269)
T ss_pred hCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcChHHHHH
Confidence 5788 89999998654 33454443221111122 233322110 111111 122129999999998777
Q ss_pred HHHHHhcCC-CCCc-hHHHHHHHHHHHhCCCchHHHHhh
Q 047161 269 LFNKRAFDG-QPSK-DYVELIKRIVKYADGLPFALETLG 305 (720)
Q Consensus 269 Lf~~~af~~-~~~~-~~~~~~~~i~~~c~glPLai~~~g 305 (720)
....+.-+. .+.+ --.+....|.....|.|.++..++
T Consensus 208 yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~ 246 (269)
T COG3267 208 YLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLA 246 (269)
T ss_pred HHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHH
Confidence 776654433 2222 123455677888899998887654
No 273
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=20.69 E-value=1.3e+02 Score=32.27 Aligned_cols=16 Identities=13% Similarity=0.513 Sum_probs=13.2
Q ss_pred hcCCeEEEEecCCcHH
Q 047161 204 RRRNVLVVIDDAVHIR 219 (720)
Q Consensus 204 ~~kr~LlVLDdv~~~~ 219 (720)
.|++++|++|++....
T Consensus 254 ~G~dVlL~iDsItR~a 269 (416)
T PRK09376 254 HGKDVVILLDSITRLA 269 (416)
T ss_pred cCCCEEEEEEChHHHH
Confidence 6899999999997543
Done!