Query 047161
Match_columns 720
No_of_seqs 605 out of 4956
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 14:22:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047161.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047161hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3jrn_A AT1G72930 protein; TIR 100.0 1.7E-32 5.8E-37 251.7 6.4 121 1-124 36-175 (176)
2 2a5y_B CED-4; apoptosis; HET: 100.0 4.8E-30 1.6E-34 287.8 17.9 236 131-373 131-422 (549)
3 3ozi_A L6TR; plant TIR domain, 100.0 3.6E-31 1.2E-35 246.3 6.8 118 1-120 63-201 (204)
4 3rgz_A Protein brassinosteroid 99.9 7.9E-26 2.7E-30 264.8 8.8 77 623-699 634-714 (768)
5 4eco_A Uncharacterized protein 99.9 1.4E-25 4.9E-30 256.7 9.5 333 332-699 208-597 (636)
6 3t6q_A CD180 antigen; protein- 99.9 3.5E-24 1.2E-28 244.8 18.5 100 332-438 59-166 (606)
7 4ecn_A Leucine-rich repeat pro 99.9 3.1E-24 1.1E-28 250.1 18.2 209 377-605 443-710 (876)
8 3sfz_A APAF-1, apoptotic pepti 99.9 3.3E-24 1.1E-28 265.6 18.5 234 123-366 119-407 (1249)
9 3rgz_A Protein brassinosteroid 99.9 3.3E-25 1.1E-29 259.5 7.6 331 332-697 202-546 (768)
10 4eco_A Uncharacterized protein 99.9 5.9E-24 2E-28 243.3 16.6 304 377-701 201-578 (636)
11 4ecn_A Leucine-rich repeat pro 99.9 1.9E-24 6.4E-29 251.9 12.4 332 332-699 450-837 (876)
12 1vt4_I APAF-1 related killer D 99.9 4.3E-24 1.5E-28 242.7 14.4 216 128-366 128-399 (1221)
13 1jl5_A Outer protein YOPM; leu 99.9 2.8E-22 9.5E-27 219.5 25.4 343 332-709 13-419 (454)
14 3t6q_A CD180 antigen; protein- 99.9 7.5E-23 2.6E-27 233.7 19.7 347 332-699 35-486 (606)
15 2id5_A Lingo-1, leucine rich r 99.9 3.2E-22 1.1E-26 221.5 20.7 288 387-699 16-330 (477)
16 2ft3_A Biglycan; proteoglycan, 99.9 6.2E-22 2.1E-26 208.2 20.8 281 382-698 33-329 (332)
17 1xku_A Decorin; proteoglycan, 99.9 9.7E-22 3.3E-26 206.6 21.3 283 381-698 30-328 (330)
18 3vq2_A TLR4, TOLL-like recepto 99.9 7.4E-23 2.5E-27 233.8 13.5 212 492-710 346-572 (606)
19 2z7x_B TOLL-like receptor 1, v 99.9 1.2E-22 4.1E-27 227.6 14.8 347 334-710 4-496 (520)
20 3v47_A TOLL-like receptor 5B a 99.9 1.6E-21 5.5E-26 214.6 23.1 298 382-710 30-423 (455)
21 4fmz_A Internalin; leucine ric 99.9 1.5E-21 5.3E-26 206.6 20.9 278 377-699 61-343 (347)
22 2id5_A Lingo-1, leucine rich r 99.9 3.1E-22 1.1E-26 221.7 14.9 289 333-655 35-331 (477)
23 2z63_A TOLL-like receptor 4, v 99.9 2.3E-22 7.8E-27 228.0 14.1 164 539-710 368-546 (570)
24 3vq2_A TLR4, TOLL-like recepto 99.9 1.7E-22 5.8E-27 230.8 12.4 220 455-681 326-561 (606)
25 3o6n_A APL1; leucine-rich repe 99.9 3.2E-21 1.1E-25 207.5 20.3 281 381-699 44-349 (390)
26 3j0a_A TOLL-like receptor 5; m 99.9 8.4E-22 2.9E-26 233.1 16.8 343 332-699 26-436 (844)
27 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1.4E-21 4.8E-26 220.9 17.4 337 333-699 34-507 (562)
28 3bz5_A Internalin-J, INLJ; leu 99.9 1.8E-21 6.2E-26 213.2 17.8 278 376-699 58-349 (457)
29 1o6v_A Internalin A; bacterial 99.9 1.7E-21 5.8E-26 214.9 16.7 285 377-698 85-384 (466)
30 3oja_B Anopheles plasmodium-re 99.9 4.7E-21 1.6E-25 217.9 20.1 281 381-699 50-355 (597)
31 3v47_A TOLL-like receptor 5B a 99.9 3.2E-21 1.1E-25 212.1 17.9 133 544-682 275-412 (455)
32 4fmz_A Internalin; leucine ric 99.9 4.1E-21 1.4E-25 203.3 17.3 279 377-699 39-321 (347)
33 1ogq_A PGIP-2, polygalacturona 99.9 9.5E-22 3.2E-26 204.8 11.8 221 404-655 51-279 (313)
34 1ziw_A TOLL-like receptor 3; i 99.9 2.8E-21 9.7E-26 223.8 17.0 352 332-699 27-490 (680)
35 2z81_A CD282 antigen, TOLL-lik 99.9 5.3E-22 1.8E-26 223.9 10.4 201 497-711 311-526 (549)
36 4fcg_A Uncharacterized protein 99.9 4.7E-21 1.6E-25 200.7 16.7 197 453-697 100-309 (328)
37 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1.1E-20 3.7E-25 213.7 20.9 127 568-700 353-484 (562)
38 1ziw_A TOLL-like receptor 3; i 99.9 1E-20 3.6E-25 219.0 21.3 201 492-699 401-619 (680)
39 4fcg_A Uncharacterized protein 99.9 3.1E-21 1.1E-25 202.1 15.2 210 455-712 79-301 (328)
40 1ogq_A PGIP-2, polygalacturona 99.9 2E-21 6.8E-26 202.4 12.5 245 382-659 50-306 (313)
41 1z6t_A APAF-1, apoptotic prote 99.8 1.3E-20 4.5E-25 214.2 20.2 231 124-366 120-407 (591)
42 2z7x_B TOLL-like receptor 1, v 99.8 1.1E-20 3.6E-25 211.7 19.0 288 382-702 21-457 (520)
43 2z80_A TOLL-like receptor 2, v 99.8 3.1E-21 1.1E-25 204.7 12.6 273 380-677 29-313 (353)
44 1o6v_A Internalin A; bacterial 99.8 6.8E-21 2.3E-25 210.0 15.6 293 376-699 62-363 (466)
45 1ozn_A Reticulon 4 receptor; N 99.8 5.3E-20 1.8E-24 189.0 20.2 221 406-655 14-236 (285)
46 3j0a_A TOLL-like receptor 5; m 99.8 6E-21 2.1E-25 225.8 14.2 307 332-655 50-437 (844)
47 3bz5_A Internalin-J, INLJ; leu 99.8 7.6E-20 2.6E-24 200.3 21.8 272 377-698 37-327 (457)
48 3o6n_A APL1; leucine-rich repe 99.8 2.2E-20 7.7E-25 201.0 16.2 258 403-699 45-328 (390)
49 2z81_A CD282 antigen, TOLL-lik 99.8 1.2E-20 4.1E-25 212.8 14.1 160 377-559 45-211 (549)
50 2z66_A Variable lymphocyte rec 99.8 7.8E-20 2.7E-24 189.8 18.5 238 408-676 12-259 (306)
51 3oja_B Anopheles plasmodium-re 99.8 2.8E-20 9.5E-25 211.5 16.4 258 403-699 51-334 (597)
52 3zyj_A Leucine-rich repeat-con 99.8 1.7E-19 5.8E-24 197.3 22.0 241 385-655 46-290 (440)
53 1jl5_A Outer protein YOPM; leu 99.8 7.3E-19 2.5E-23 192.3 26.1 263 382-687 111-420 (454)
54 1xku_A Decorin; proteoglycan, 99.8 1.8E-19 6.2E-24 189.2 20.5 258 404-699 32-303 (330)
55 3g06_A SSPH2 (leucine-rich rep 99.8 5.9E-19 2E-23 199.1 25.5 265 382-709 40-305 (622)
56 3zyi_A Leucine-rich repeat-con 99.8 2.7E-19 9.2E-24 196.4 22.0 241 385-655 57-301 (452)
57 2ft3_A Biglycan; proteoglycan, 99.8 2.9E-19 9.9E-24 187.8 20.3 258 404-699 34-304 (332)
58 3zyj_A Leucine-rich repeat-con 99.8 6.4E-19 2.2E-23 192.7 23.8 241 404-676 44-290 (440)
59 2z66_A Variable lymphocyte rec 99.8 1.8E-19 6.1E-24 187.1 17.2 234 456-711 27-276 (306)
60 2z63_A TOLL-like receptor 4, v 99.8 1.7E-19 5.8E-24 204.3 18.2 86 492-578 120-210 (570)
61 3zyi_A Leucine-rich repeat-con 99.8 7.6E-19 2.6E-23 192.8 22.7 220 404-654 55-276 (452)
62 2z80_A TOLL-like receptor 2, v 99.8 2.7E-19 9.1E-24 189.8 15.4 273 407-711 35-330 (353)
63 1ozn_A Reticulon 4 receptor; N 99.8 4.4E-18 1.5E-22 174.7 21.6 201 455-676 30-236 (285)
64 3rfs_A Internalin B, repeat mo 99.8 1.1E-18 3.9E-23 177.6 16.5 213 453-693 37-250 (272)
65 4g8a_A TOLL-like receptor 4; l 99.8 3.8E-19 1.3E-23 204.1 14.3 209 495-710 370-594 (635)
66 3oja_A Leucine-rich immune mol 99.8 7.1E-19 2.4E-23 194.3 13.5 189 492-696 76-269 (487)
67 3o53_A Protein LRIM1, AGAP0063 99.8 4.6E-19 1.6E-23 184.9 11.1 190 492-697 76-270 (317)
68 1p9a_G Platelet glycoprotein I 99.8 4.7E-18 1.6E-22 174.5 18.3 195 405-655 12-206 (290)
69 2z62_A TOLL-like receptor 4, v 99.8 9.7E-18 3.3E-22 171.2 20.1 217 409-655 13-235 (276)
70 2o6q_A Variable lymphocyte rec 99.8 1.6E-17 5.6E-22 168.9 20.8 201 402-655 15-216 (270)
71 2z62_A TOLL-like receptor 4, v 99.8 7.9E-18 2.7E-22 171.9 17.5 203 457-676 28-235 (276)
72 3o53_A Protein LRIM1, AGAP0063 99.8 2.6E-18 9E-23 179.1 13.4 240 430-710 15-260 (317)
73 3g06_A SSPH2 (leucine-rich rep 99.8 5E-17 1.7E-21 183.4 24.0 242 382-686 61-305 (622)
74 1wwl_A Monocyte differentiatio 99.8 7.2E-20 2.4E-24 190.6 0.6 243 377-675 38-306 (312)
75 2o6q_A Variable lymphocyte rec 99.7 4.4E-17 1.5E-21 165.7 20.2 175 496-676 37-216 (270)
76 2xwt_C Thyrotropin receptor; s 99.7 1.2E-17 4E-22 166.7 15.0 178 453-677 51-238 (239)
77 4g8a_A TOLL-like receptor 4; l 99.7 1.3E-17 4.5E-22 191.2 15.6 149 393-564 42-193 (635)
78 1wwl_A Monocyte differentiatio 99.7 9.8E-20 3.3E-24 189.5 -2.3 177 493-699 118-306 (312)
79 1p9a_G Platelet glycoprotein I 99.7 8.5E-17 2.9E-21 165.2 19.6 197 453-676 6-206 (290)
80 3rfs_A Internalin B, repeat mo 99.7 4.5E-17 1.5E-21 165.8 17.1 160 492-662 81-240 (272)
81 3oja_A Leucine-rich immune mol 99.7 1.2E-17 4E-22 184.5 13.4 223 454-709 31-259 (487)
82 2xwt_C Thyrotropin receptor; s 99.7 5.2E-17 1.8E-21 161.9 16.1 191 457-696 31-233 (239)
83 3m19_A Variable lymphocyte rec 99.7 2.4E-16 8.4E-21 158.3 18.6 175 458-655 15-190 (251)
84 1h6u_A Internalin H; cell adhe 99.7 1.1E-16 3.9E-21 165.8 16.1 147 492-654 81-227 (308)
85 4ay9_X Follicle-stimulating ho 99.7 1.4E-16 4.7E-21 168.5 15.8 238 406-674 12-255 (350)
86 1h6u_A Internalin H; cell adhe 99.7 5.7E-16 2E-20 160.5 15.7 192 404-637 42-233 (308)
87 3m19_A Variable lymphocyte rec 99.7 2.5E-15 8.6E-20 150.9 19.8 179 404-635 15-193 (251)
88 4ay9_X Follicle-stimulating ho 99.7 8.7E-16 3E-20 162.3 16.2 221 456-699 29-256 (350)
89 4glp_A Monocyte differentiatio 99.6 3.7E-16 1.2E-20 162.3 10.2 178 493-675 114-304 (310)
90 2ast_B S-phase kinase-associat 99.6 8.5E-17 2.9E-21 169.2 2.5 69 611-684 242-312 (336)
91 4glp_A Monocyte differentiatio 99.6 4.2E-16 1.4E-20 161.9 7.4 198 494-699 89-304 (310)
92 1z7x_W Ribonuclease inhibitor; 99.6 1.7E-17 5.8E-22 182.6 -4.6 303 377-699 51-408 (461)
93 1h6t_A Internalin B; cell adhe 99.6 5.5E-15 1.9E-19 151.7 14.5 172 451-655 40-211 (291)
94 2o6s_A Variable lymphocyte rec 99.6 2.9E-14 9.9E-19 138.7 15.1 180 460-690 10-190 (208)
95 3cvr_A Invasion plasmid antige 99.6 3.6E-14 1.2E-18 158.1 17.4 160 457-655 80-241 (571)
96 2o6s_A Variable lymphocyte rec 99.6 6.8E-14 2.3E-18 136.0 17.0 160 453-662 24-183 (208)
97 3cvr_A Invasion plasmid antige 99.6 6E-14 2.1E-18 156.3 18.4 186 404-643 60-253 (571)
98 1z7x_W Ribonuclease inhibitor; 99.5 5.9E-17 2E-21 178.3 -6.5 299 378-699 24-380 (461)
99 1m9s_A Internalin B; cell inva 99.5 3.8E-14 1.3E-18 159.6 16.2 170 453-655 39-208 (605)
100 2ca6_A RAN GTPase-activating p 99.5 2.1E-16 7.1E-21 169.6 -2.9 239 424-699 31-313 (386)
101 4ezg_A Putative uncharacterize 99.5 2.3E-14 7.9E-19 138.0 11.4 151 454-655 41-192 (197)
102 1h6t_A Internalin B; cell adhe 99.5 4.2E-14 1.5E-18 145.1 13.8 168 492-676 42-211 (291)
103 2v9t_B SLIT homolog 2 protein 99.5 8.2E-14 2.8E-18 136.6 15.1 150 406-580 14-164 (220)
104 2xot_A Amphoterin-induced prot 99.5 3.6E-14 1.2E-18 150.5 13.1 136 494-655 62-200 (361)
105 2v9t_B SLIT homolog 2 protein 99.5 1.3E-13 4.3E-18 135.3 16.0 149 460-655 14-163 (220)
106 2v70_A SLIT-2, SLIT homolog 2 99.5 9.2E-14 3.2E-18 136.3 14.2 153 406-581 14-166 (220)
107 3goz_A Leucine-rich repeat-con 99.5 9.8E-16 3.3E-20 162.8 -0.1 228 408-655 3-264 (362)
108 3e6j_A Variable lymphocyte rec 99.5 1.4E-13 4.7E-18 135.9 15.0 150 407-581 23-172 (229)
109 2xot_A Amphoterin-induced prot 99.5 1E-13 3.5E-18 147.0 14.7 163 406-592 21-187 (361)
110 2ca6_A RAN GTPase-activating p 99.5 9.5E-16 3.2E-20 164.5 -1.9 172 377-580 27-228 (386)
111 1m9s_A Internalin B; cell inva 99.5 4.2E-14 1.4E-18 159.3 11.4 170 492-678 39-210 (605)
112 2v70_A SLIT-2, SLIT homolog 2 99.5 3.5E-13 1.2E-17 132.1 15.7 149 460-655 14-164 (220)
113 1xeu_A Internalin C; cellular 99.5 6.4E-14 2.2E-18 141.4 9.7 150 450-655 34-183 (263)
114 3e6j_A Variable lymphocyte rec 99.5 4.9E-13 1.7E-17 132.0 15.7 149 458-655 20-170 (229)
115 2ast_B S-phase kinase-associat 99.5 3.7E-15 1.3E-19 156.6 0.2 200 425-675 70-282 (336)
116 3goz_A Leucine-rich repeat-con 99.5 4.8E-15 1.7E-19 157.4 -0.6 250 386-655 2-295 (362)
117 4ezg_A Putative uncharacterize 99.4 1.5E-13 5E-18 132.4 9.4 110 452-580 83-193 (197)
118 4b8c_D Glucose-repressible alc 99.4 6.9E-14 2.3E-18 161.6 5.9 121 452-591 219-339 (727)
119 3h16_A TIR protein; bacteria T 99.4 7.1E-15 2.4E-19 134.6 -2.4 70 1-70 47-135 (154)
120 1xeu_A Internalin C; cellular 99.4 7.1E-13 2.4E-17 133.7 12.1 170 404-638 20-189 (263)
121 2ell_A Acidic leucine-rich nuc 99.4 1.2E-12 4.1E-17 122.4 10.8 132 494-655 22-158 (168)
122 1w8a_A SLIT protein; signaling 99.3 5E-12 1.7E-16 121.0 12.7 90 492-581 50-139 (192)
123 3ogk_B Coronatine-insensitive 99.3 3.4E-14 1.2E-18 161.4 -3.0 152 379-552 161-326 (592)
124 2wfh_A SLIT homolog 2 protein 99.3 9.5E-12 3.2E-16 119.1 14.6 109 457-581 31-139 (193)
125 2ell_A Acidic leucine-rich nuc 99.3 3.9E-12 1.3E-16 118.9 10.0 141 455-639 22-165 (168)
126 1dce_A Protein (RAB geranylger 99.3 1.8E-13 6.1E-18 153.2 0.1 106 521-661 442-549 (567)
127 2je0_A Acidic leucine-rich nuc 99.3 4.7E-12 1.6E-16 115.8 8.2 129 495-653 16-149 (149)
128 1w8a_A SLIT protein; signaling 99.3 1.9E-11 6.4E-16 116.9 12.0 127 460-634 11-139 (192)
129 2o6r_A Variable lymphocyte rec 99.3 5.1E-11 1.8E-15 112.3 14.9 110 457-581 28-137 (177)
130 2wfh_A SLIT homolog 2 protein 99.3 2.5E-11 8.5E-16 116.1 12.8 107 460-585 13-119 (193)
131 1a9n_A U2A', U2A'; complex (nu 99.3 8.1E-12 2.8E-16 117.7 9.2 133 451-655 13-151 (176)
132 2je0_A Acidic leucine-rich nuc 99.3 5.7E-12 1.9E-16 115.2 6.7 112 455-584 15-129 (149)
133 2o6r_A Variable lymphocyte rec 99.2 7.9E-11 2.7E-15 111.0 13.9 132 406-562 10-142 (177)
134 2p1m_B Transport inhibitor res 99.2 1.4E-13 4.6E-18 156.5 -7.6 316 379-702 102-518 (594)
135 4b8c_D Glucose-repressible alc 99.2 4.3E-12 1.5E-16 146.6 4.8 148 492-675 220-369 (727)
136 3ogk_B Coronatine-insensitive 99.2 1.6E-12 5.3E-17 147.7 -0.1 223 455-697 162-411 (592)
137 3sb4_A Hypothetical leucine ri 99.2 4.7E-11 1.6E-15 124.7 11.3 101 543-650 225-327 (329)
138 1a9n_A U2A', U2A'; complex (nu 99.2 3.2E-11 1.1E-15 113.6 6.6 85 492-578 60-150 (176)
139 1dce_A Protein (RAB geranylger 99.1 1.2E-10 4E-15 130.4 11.0 104 453-574 459-566 (567)
140 3g39_A Variable lymphocyte rec 99.1 3.6E-10 1.2E-14 105.6 11.9 107 458-582 10-116 (170)
141 2r9u_A Variable lymphocyte rec 99.1 5.2E-10 1.8E-14 104.9 11.9 104 460-582 15-119 (174)
142 2p1m_B Transport inhibitor res 99.1 6.8E-12 2.3E-16 142.4 -1.8 231 455-703 103-384 (594)
143 3ub2_A TOLL/interleukin-1 rece 99.1 1.6E-12 5.3E-17 117.0 -5.7 52 1-52 38-89 (146)
144 2r9u_A Variable lymphocyte rec 99.0 3.2E-09 1.1E-13 99.5 11.5 109 498-638 14-122 (174)
145 1ds9_A Outer arm dynein; leuci 99.0 4.3E-12 1.5E-16 122.1 -8.8 95 453-559 14-108 (198)
146 3g39_A Variable lymphocyte rec 98.9 3.7E-09 1.3E-13 98.6 11.4 108 497-636 10-117 (170)
147 1fyx_A TOLL-like receptor 2; b 98.9 1.3E-10 4.3E-15 105.3 1.0 52 1-52 34-85 (149)
148 4fdw_A Leucine rich hypothetic 98.9 4.5E-08 1.5E-12 104.5 20.9 173 453-654 176-355 (401)
149 1ds9_A Outer arm dynein; leuci 98.9 4.5E-12 1.5E-16 122.0 -10.5 149 492-650 14-180 (198)
150 3sb4_A Hypothetical leucine ri 98.9 7.2E-09 2.5E-13 108.0 12.4 94 591-693 225-325 (329)
151 2j67_A TOLL like receptor 10; 98.9 2.3E-10 8E-15 106.3 0.8 52 1-52 64-115 (178)
152 2ifg_A High affinity nerve gro 98.8 2.1E-08 7E-13 105.4 11.9 89 492-581 27-116 (347)
153 1t3g_A X-linked interleukin-1 98.8 9.6E-10 3.3E-14 100.4 0.9 52 1-52 41-93 (159)
154 4fdw_A Leucine rich hypothetic 98.8 2E-07 6.7E-12 99.6 18.7 209 453-693 154-374 (401)
155 2js7_A Myeloid differentiation 98.8 7.1E-10 2.4E-14 101.4 -0.5 52 1-52 44-96 (160)
156 2qen_A Walker-type ATPase; unk 98.6 4.7E-07 1.6E-11 94.9 15.7 182 121-308 5-249 (350)
157 2ifg_A High affinity nerve gro 98.6 8.7E-08 3E-12 100.5 10.0 101 500-602 12-113 (347)
158 1w5s_A Origin recognition comp 98.6 2.5E-07 8.5E-12 99.5 13.7 176 126-305 20-266 (412)
159 2fna_A Conserved hypothetical 98.5 3E-07 1E-11 96.7 11.6 178 121-309 6-254 (357)
160 1njg_A DNA polymerase III subu 98.4 7.5E-06 2.6E-10 80.5 16.4 173 127-307 22-230 (250)
161 3un9_A NLR family member X1; l 98.3 9.6E-09 3.3E-13 108.6 -7.1 165 455-655 70-250 (372)
162 3un9_A NLR family member X1; l 98.2 2.9E-08 9.9E-13 104.9 -5.3 86 495-580 125-223 (372)
163 4fs7_A Uncharacterized protein 98.2 4.1E-05 1.4E-09 81.5 17.9 16 452-467 157-172 (394)
164 2qby_B CDC6 homolog 3, cell di 98.1 0.0001 3.5E-09 78.1 19.0 192 128-323 20-270 (384)
165 2chg_A Replication factor C sm 98.1 4.2E-05 1.4E-09 74.0 14.0 169 127-304 16-203 (226)
166 2v1u_A Cell division control p 98.1 9.5E-05 3.2E-09 78.3 17.9 193 127-323 18-276 (387)
167 1sxj_B Activator 1 37 kDa subu 98.0 4.4E-05 1.5E-09 78.8 13.7 170 127-305 20-210 (323)
168 4fs7_A Uncharacterized protein 98.0 0.00015 5.2E-09 77.1 17.7 76 495-575 229-304 (394)
169 2qby_A CDC6 homolog 1, cell di 97.9 3.8E-05 1.3E-09 81.4 11.7 173 126-302 18-242 (386)
170 2ra8_A Uncharacterized protein 97.9 1.7E-06 5.7E-11 90.7 1.0 91 453-553 135-228 (362)
171 2ra8_A Uncharacterized protein 97.8 4.4E-06 1.5E-10 87.5 2.1 15 378-392 135-149 (362)
172 3rw6_A Nuclear RNA export fact 97.8 7.4E-06 2.5E-10 81.3 2.5 82 492-575 166-258 (267)
173 1fnn_A CDC6P, cell division co 97.7 0.00049 1.7E-08 72.8 15.6 176 127-303 16-245 (389)
174 1iqp_A RFCS; clamp loader, ext 97.6 0.00091 3.1E-08 68.8 16.0 169 127-304 24-211 (327)
175 1io0_A Tropomodulin; LRR prote 97.6 2E-05 6.9E-10 74.1 2.8 118 453-580 32-163 (185)
176 3rw6_A Nuclear RNA export fact 97.6 4.4E-05 1.5E-09 75.7 5.4 83 454-551 167-258 (267)
177 4gt6_A Cell surface protein; l 97.6 0.0024 8.1E-08 67.8 19.1 214 453-697 133-365 (394)
178 3e4g_A ATP synthase subunit S, 97.5 1.8E-05 6.3E-10 72.7 0.6 85 621-706 61-155 (176)
179 4h09_A Hypothetical leucine ri 97.4 0.0093 3.2E-07 62.7 19.7 16 377-392 64-79 (379)
180 4gt6_A Cell surface protein; l 97.2 0.013 4.3E-07 62.1 19.2 190 492-696 133-341 (394)
181 1io0_A Tropomodulin; LRR prote 97.2 0.00024 8.1E-09 66.7 5.0 94 453-557 61-164 (185)
182 3e4g_A ATP synthase subunit S, 97.2 9.6E-05 3.3E-09 68.0 2.1 85 456-555 60-150 (176)
183 1hqc_A RUVB; extended AAA-ATPa 96.8 0.012 4.1E-07 60.3 13.5 173 126-306 10-212 (324)
184 2chq_A Replication factor C sm 96.7 0.037 1.3E-06 56.3 16.6 169 126-303 15-202 (319)
185 3h4m_A Proteasome-activating n 96.7 0.037 1.3E-06 55.4 15.8 162 125-297 14-222 (285)
186 1jr3_A DNA polymerase III subu 96.5 0.038 1.3E-06 57.7 15.3 171 127-305 15-221 (373)
187 3d8b_A Fidgetin-like protein 1 96.2 0.17 5.9E-06 52.4 18.3 191 103-305 62-295 (357)
188 1d2n_A N-ethylmaleimide-sensit 96.1 0.19 6.7E-06 49.7 17.2 184 128-324 33-262 (272)
189 4h09_A Hypothetical leucine ri 96.0 0.06 2.1E-06 56.3 13.6 81 492-575 236-317 (379)
190 1sxj_A Activator 1 95 kDa subu 95.9 0.12 4.1E-06 56.6 15.9 167 127-305 38-253 (516)
191 2qz4_A Paraplegin; AAA+, SPG7, 95.9 0.34 1.1E-05 47.5 17.6 166 127-299 5-215 (262)
192 1sxj_D Activator 1 41 kDa subu 95.2 0.45 1.5E-05 48.9 16.6 167 127-304 36-234 (353)
193 1sxj_E Activator 1 40 kDa subu 95.2 0.16 5.3E-06 52.5 12.8 98 206-303 134-235 (354)
194 1jbk_A CLPB protein; beta barr 94.9 0.052 1.8E-06 50.2 7.6 132 127-269 21-193 (195)
195 3u61_B DNA polymerase accessor 94.9 0.18 6.1E-06 51.4 12.3 163 127-300 25-211 (324)
196 3bos_A Putative DNA replicatio 94.9 0.054 1.9E-06 52.4 7.8 167 126-303 26-215 (242)
197 3pfi_A Holliday junction ATP-d 94.6 0.43 1.5E-05 48.8 14.3 170 126-303 27-225 (338)
198 3rfe_A Platelet glycoprotein I 94.2 0.088 3E-06 45.6 6.6 53 500-556 12-67 (130)
199 3eie_A Vacuolar protein sortin 94.2 1.3 4.4E-05 44.9 16.5 164 126-297 16-219 (322)
200 3syl_A Protein CBBX; photosynt 94.1 0.62 2.1E-05 46.9 13.9 139 129-275 32-218 (309)
201 2z4s_A Chromosomal replication 93.2 0.89 3E-05 48.4 13.8 115 206-323 194-332 (440)
202 2qp9_X Vacuolar protein sortin 93.1 4.5 0.00015 41.5 18.5 162 126-297 49-252 (355)
203 3rfe_A Platelet glycoprotein I 93.1 0.16 5.6E-06 43.9 6.3 37 496-533 31-68 (130)
204 3pvs_A Replication-associated 93.0 0.96 3.3E-05 48.2 13.5 165 127-302 25-212 (447)
205 3vfd_A Spastin; ATPase, microt 92.9 4.1 0.00014 42.4 18.2 172 125-304 112-325 (389)
206 1l8q_A Chromosomal replication 92.9 1.3 4.6E-05 44.8 14.1 89 206-299 98-202 (324)
207 3b9p_A CG5977-PA, isoform A; A 92.5 5 0.00017 39.7 17.7 170 125-304 18-232 (297)
208 3uk6_A RUVB-like 2; hexameric 92.5 3.7 0.00013 42.2 17.2 90 208-302 191-300 (368)
209 1xwi_A SKD1 protein; VPS4B, AA 92.4 5 0.00017 40.5 17.5 165 127-298 11-215 (322)
210 3cf0_A Transitional endoplasmi 92.0 5.2 0.00018 39.9 17.0 162 127-299 14-222 (301)
211 3te6_A Regulatory protein SIR3 92.0 0.88 3E-05 45.9 11.1 138 130-274 22-211 (318)
212 2zan_A Vacuolar protein sortin 91.9 4 0.00014 43.4 16.8 166 126-298 132-337 (444)
213 3hu3_A Transitional endoplasmi 90.0 3.5 0.00012 44.4 14.1 159 128-297 204-406 (489)
214 1a5t_A Delta prime, HOLB; zinc 88.3 10 0.00035 38.3 15.7 95 205-305 107-205 (334)
215 1sxj_C Activator 1 40 kDa subu 88.0 10 0.00034 38.5 15.5 163 128-301 25-208 (340)
216 1pgv_A TMD-1, tropomodulin TMD 88.0 0.51 1.8E-05 43.9 4.9 90 455-554 39-136 (197)
217 1pgv_A TMD-1, tropomodulin TMD 87.3 0.27 9.3E-06 45.8 2.6 90 487-577 32-135 (197)
218 3n70_A Transport activator; si 84.4 2.5 8.5E-05 36.9 7.4 108 129-243 2-115 (145)
219 2r62_A Cell division protease 84.3 1.4 4.9E-05 43.1 6.4 142 126-274 9-196 (268)
220 2p65_A Hypothetical protein PF 83.4 3.7 0.00013 37.0 8.5 46 127-180 21-66 (187)
221 4b4t_M 26S protease regulatory 83.2 16 0.00053 38.5 14.0 161 127-298 180-387 (434)
222 1r6b_X CLPA protein; AAA+, N-t 82.8 16 0.00054 41.7 15.3 137 127-274 185-362 (758)
223 2gno_A DNA polymerase III, gam 81.3 8.8 0.0003 38.3 10.9 132 134-274 3-152 (305)
224 3ec2_A DNA replication protein 81.2 3 0.0001 37.8 6.9 85 151-242 38-141 (180)
225 1lv7_A FTSH; alpha/beta domain 80.8 30 0.001 33.1 14.5 142 126-274 10-195 (257)
226 4b4t_J 26S protease regulatory 79.7 47 0.0016 34.4 15.9 160 128-298 148-354 (405)
227 2ce7_A Cell division protein F 78.5 30 0.001 36.8 14.5 162 126-298 14-221 (476)
228 2bjv_A PSP operon transcriptio 78.0 16 0.00055 35.3 11.5 35 128-162 6-40 (265)
229 4b4t_L 26S protease subunit RP 77.8 43 0.0015 35.1 15.1 161 127-298 180-387 (437)
230 4b4t_H 26S protease regulatory 75.0 68 0.0023 33.8 15.6 160 128-298 209-415 (467)
231 3pxi_A Negative regulator of g 74.8 15 0.00051 42.0 11.7 140 128-273 491-674 (758)
232 1qvr_A CLPB protein; coiled co 74.3 10 0.00036 43.9 10.3 135 127-272 169-343 (854)
233 3pxg_A Negative regulator of g 73.5 32 0.0011 36.5 13.2 135 127-274 179-338 (468)
234 1ofh_A ATP-dependent HSL prote 72.1 8.5 0.00029 38.2 7.9 47 128-180 15-73 (310)
235 4b4t_I 26S protease regulatory 70.8 65 0.0022 33.6 14.1 161 127-298 181-388 (437)
236 4fcw_A Chaperone protein CLPB; 69.5 41 0.0014 33.1 12.4 36 129-164 18-60 (311)
237 3pxi_A Negative regulator of g 68.2 40 0.0014 38.3 13.3 135 127-274 179-338 (758)
238 1ojl_A Transcriptional regulat 68.2 44 0.0015 33.0 12.1 35 128-162 2-36 (304)
239 3co5_A Putative two-component 65.1 4.6 0.00016 35.1 3.6 35 129-163 5-39 (143)
240 1in4_A RUVB, holliday junction 64.7 95 0.0032 31.0 14.0 167 128-302 25-220 (334)
241 4b4t_K 26S protease regulatory 63.7 1.4E+02 0.0049 31.0 16.5 161 127-298 171-379 (428)
242 1ixz_A ATP-dependent metallopr 63.1 1E+02 0.0035 29.1 13.9 142 126-274 14-199 (254)
243 3hyn_A Putative signal transdu 61.2 6.3 0.00022 35.5 3.6 50 3-52 47-104 (189)
244 3t15_A Ribulose bisphosphate c 60.3 96 0.0033 30.3 12.8 117 150-275 35-199 (293)
245 2dhr_A FTSH; AAA+ protein, hex 54.3 1.7E+02 0.0057 31.2 14.1 143 125-274 28-214 (499)
246 1iy2_A ATP-dependent metallopr 54.1 1.5E+02 0.0053 28.3 14.9 142 125-274 37-223 (278)
247 1ypw_A Transitional endoplasmi 52.3 1.2E+02 0.0042 34.6 13.5 141 127-275 203-386 (806)
248 2kjq_A DNAA-related protein; s 49.7 25 0.00086 30.6 5.7 17 151-167 36-52 (149)
249 3cf2_A TER ATPase, transitiona 47.6 1.2E+02 0.004 34.6 12.1 161 127-298 203-407 (806)
250 1jr3_D DNA polymerase III, del 44.0 1.6E+02 0.0055 29.3 11.7 99 204-303 74-183 (343)
251 1r6b_X CLPA protein; AAA+, N-t 42.7 1.1E+02 0.0037 34.7 11.2 36 128-163 458-500 (758)
252 2r44_A Uncharacterized protein 38.8 80 0.0027 31.4 8.3 135 128-275 27-199 (331)
253 2lci_A Protein OR36; structura 36.3 1.5E+02 0.005 22.9 8.2 58 191-250 10-67 (134)
254 2w58_A DNAI, primosome compone 36.3 60 0.002 29.4 6.4 37 127-163 24-66 (202)
255 2x8a_A Nuclear valosin-contain 36.2 2.9E+02 0.01 26.4 12.2 139 128-274 10-191 (274)
256 3m6a_A ATP-dependent protease 35.4 4.4E+02 0.015 28.2 15.3 137 128-274 81-266 (543)
257 1qvr_A CLPB protein; coiled co 34.3 2.8E+02 0.0094 31.8 12.9 35 129-163 559-600 (854)
258 1g5t_A COB(I)alamin adenosyltr 31.8 37 0.0013 31.1 3.9 50 195-244 108-163 (196)
259 1zu4_A FTSY; GTPase, signal re 29.0 77 0.0026 31.6 6.1 94 58-165 13-119 (320)
260 1eiw_A Hypothetical protein MT 27.8 18 0.0006 29.9 0.9 30 23-52 34-63 (111)
261 1tue_A Replication protein E1; 26.9 58 0.002 30.2 4.3 29 137-166 45-73 (212)
262 2vhj_A Ntpase P4, P4; non- hyd 23.0 1.8E+02 0.0061 29.0 7.3 58 152-217 124-193 (331)
263 2qgz_A Helicase loader, putati 22.3 75 0.0026 31.4 4.6 14 151-164 152-165 (308)
264 3ro3_B Minsc, peptide of prote 21.8 56 0.0019 17.7 1.8 14 78-91 7-20 (22)
265 1um8_A ATP-dependent CLP prote 21.5 6E+02 0.021 25.3 11.6 18 254-271 266-283 (376)
266 2pjx_C Syntaxin-4; membrane tr 20.4 29 0.00098 19.6 0.5 23 10-36 7-29 (29)
No 1
>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana}
Probab=99.97 E-value=1.7e-32 Score=251.71 Aligned_cols=121 Identities=47% Similarity=0.687 Sum_probs=98.6
Q ss_pred CceEeecCCCCCCCCcccHHHHHHHHhccceeEEeccCcccchhhhhhhccc-------------------Ccccccccc
Q 047161 1 GVKIFEDHKELERGKAVSPGLFKAIEESRFSVVVFSRNYAYSTWCLDELAKI-------------------PTVVRKQTR 61 (720)
Q Consensus 1 gi~~f~d~~~l~~g~~~~~~l~~ai~~s~~~ivv~S~~ya~s~wcl~el~~i-------------------p~~vr~~~~ 61 (720)
||+||+||+++++|+.|+++|.+||++|+++|||||+|||+|+||++||++| |++||+|+|
T Consensus 36 gi~~f~D~~~l~~G~~i~~~l~~aIe~Sri~IvV~S~ny~~S~WCl~EL~~i~~~~~~~~~~ViPIfy~V~ps~Vr~q~g 115 (176)
T 3jrn_A 36 SIRTFKDDKELENGQRFSPELKSPIEVSRFAVVVVSENYAASSWCLDELVTIMDFEKKGSITVMPIFYGVEPNHVRWQTG 115 (176)
T ss_dssp TCCEECCCC--------------CCTTEEEEEEEECTTTTTCHHHHHHHHHHHHHHHTTSCEEEEEECSSCHHHHHHTCT
T ss_pred CCEEEEEcccccCCCchHHHHHHHHHhCCEEEEEecCCcCCChhHHHHHHHHHhhhccCCCEEEEEEecCCHHHhhhccC
Confidence 8999999989999999999999999999999999999999999999999998 999999999
Q ss_pred hHHHHHHHHHHHhhhChHHHHHHHHHHHHhccCCcccccChhHHHHHHHHHHhhhhccCCCcc
Q 047161 62 SFHEAFAKHEEAFRESTEKVQNWRHALTEVANPSGWHLKDRHEVEFIQEIVKEISRKKGPRTL 124 (720)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~v~~w~~~l~~~~~~~g~~~~~~~e~~~i~~i~~~i~~~~~~~~~ 124 (720)
+|++||.+|+++ .+.+++++||+||++||+++||++. ++|+++|++||++|.++++++++
T Consensus 116 ~fg~af~~~~~~--~~~~~~~~Wr~AL~~va~~~G~~~~-~~e~~~i~~Iv~~v~~~l~~~~~ 175 (176)
T 3jrn_A 116 VLAEQFKKHASR--EDPEKVLKWRQALTNFAQLSGDCSG-DDDSKLVDKIANEISNKKTIYAT 175 (176)
T ss_dssp HHHHHHHHHHTT--SCHHHHHHHHHHHHHHTTSCCEECC-SCHHHHHHHHHHHHHTTCC----
T ss_pred cHHHHHHHHHhc--cCHHHHHHHHHHHHHHhcccceecC-CCHHHHHHHHHHHHHHHhcCCCC
Confidence 999999999987 5679999999999999999999984 67999999999999999987654
No 2
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=99.97 E-value=4.8e-30 Score=287.81 Aligned_cols=236 Identities=17% Similarity=0.172 Sum_probs=182.6
Q ss_pred cccchhHHHHHHhhhcc-CCCeEEEEEecCCCc---------------------------cccch--hcHHHHHHHHHHh
Q 047161 131 VEMNSRLKKLRLLLDAE-SRDVRMIGICGMGGV---------------------------ELSEK--DGLIALQKQLLSK 180 (720)
Q Consensus 131 vG~~~~~~~i~~~L~~~-~~~~~vi~I~G~gGi---------------------------~vs~~--~~~~~~~~~il~~ 180 (720)
|||+.++++|.++|..+ ..+++||+||||||| ++++. ++...++++|+.+
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~ 210 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLM 210 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHHHHH
Confidence 69999999999999654 456899999999999 22333 3688899999998
Q ss_pred hhhccc-cee-----ccchhhHHHHHHHHhcC-CeEEEEecCCcHHHHHHHhccCCCCCCCCeEEEEcCChhhhhhcc-c
Q 047161 181 TLMEID-IEI-----RNDFDGIKMIKRELRRR-NVLVVIDDAVHIRQLNRLAGKHSWFGSGSRIIIPTRDEHLLRTLR-V 252 (720)
Q Consensus 181 ~~~~~~-~~~-----~~~~~~~~~l~~~l~~k-r~LlVLDdv~~~~~~~~l~~~~~~~~~gsrIivTTR~~~v~~~~~-~ 252 (720)
+..... ... .+...++..+++.|++| ||||||||||+.+++ .+.. .+||+||||||++.|+..++ .
T Consensus 211 l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~~~-----~~gs~ilvTTR~~~v~~~~~~~ 284 (549)
T 2a5y_B 211 LKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-RWAQ-----ELRLRCLVTTRDVEISNAASQT 284 (549)
T ss_dssp HTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-HHHH-----HTTCEEEEEESBGGGGGGCCSC
T ss_pred HhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhh-cccc-----cCCCEEEEEcCCHHHHHHcCCC
Confidence 643321 111 12334588999999996 999999999999875 2221 27999999999999999886 4
Q ss_pred cceEecCCCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHhCCCchHHHHhhhhccCCCHHHHHHHHh-hhhcCCchhH
Q 047161 253 DGVYKVEKLDDDEALELFNKRAFDGQPSKDYVELIKRIVKYADGLPFALETLGSVLFGRSVDGWRSTLE-RLNKHSADEI 331 (720)
Q Consensus 253 ~~~~~l~~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~i~~~c~glPLai~~~g~~l~~k~~~~W~~~l~-~l~~~~~~~i 331 (720)
..+|+|++|+.+|||+||.++||....++++.+++.+|+++|+|+||||+++|+.|+.++. +|...+. .++..+..++
T Consensus 285 ~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~w-~~~~~l~~~l~~~~~~~i 363 (549)
T 2a5y_B 285 CEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNPATLMMFFKSCEPKTF-EKMAQLNNKLESRGLVGV 363 (549)
T ss_dssp EEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSSH-HHHHHHHHHHHHHCSSTT
T ss_pred CeEEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCChHHHHHHHHHhccchH-HHHHHhHHHhhcccHHHH
Confidence 5789999999999999999999976435788899999999999999999999999988743 2333333 4444356778
Q ss_pred HHHHHhhhcCCchh----hh-----------hhhcCCCCCCCccccchhh--hhHHHHh
Q 047161 332 LDVLEISFNGLKGR----IE-----------IMRKSPEEPGKCSRLWKVA--DVSHVLR 373 (720)
Q Consensus 332 l~~L~lSyn~L~~~----~~-----------~~~~~p~~~~~l~~Lw~~~--~~~~~~~ 373 (720)
..+|.+||++|+.+ +. ||+.||+++.--+++|+++ |++....
T Consensus 364 ~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~i~~w~a~~~G~i~~~~ 422 (549)
T 2a5y_B 364 ECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIPVKLWSCVIPVDICSNE 422 (549)
T ss_dssp CCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEEHHHHHHHSCC------
T ss_pred HHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeeeeeeeeeeccceeccCC
Confidence 99999999999876 55 9999998876558999999 7776543
No 3
>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum}
Probab=99.96 E-value=3.6e-31 Score=246.29 Aligned_cols=118 Identities=36% Similarity=0.712 Sum_probs=111.5
Q ss_pred CceEeecCCCCCCCCcccHHHHHHHHhccceeEEeccCcccchhhhhhhccc--------------------Cccccccc
Q 047161 1 GVKIFEDHKELERGKAVSPGLFKAIEESRFSVVVFSRNYAYSTWCLDELAKI--------------------PTVVRKQT 60 (720)
Q Consensus 1 gi~~f~d~~~l~~g~~~~~~l~~ai~~s~~~ivv~S~~ya~s~wcl~el~~i--------------------p~~vr~~~ 60 (720)
||+||+|++++++|+.|.++|.+||++|+++|||||+|||+|.||++||++| |++||+|+
T Consensus 63 GI~~f~D~~el~~G~~I~~~l~~aIe~Sri~IvV~S~nYa~S~WCl~EL~~I~e~~~~~~~~~ViPIFY~VdPs~Vr~q~ 142 (204)
T 3ozi_A 63 KIHTFRDDDELLKGKEIGPNLLRAIDQSKIYVPIISSGYADSKWCLMELAEIVRRQEEDPRRIILPIFYMVDPSDVRHQT 142 (204)
T ss_dssp TCCEEEEETTTCCGGGTTTTHHHHHHHCSEEEEEECTTGGGCHHHHHHHHHHHHHHHHCTTSEECCEEESSCHHHHHHTC
T ss_pred CCcEEEeCCccCCCCchHHHHHHHHHhCcEeeEEEEcccccCcHHHHHHHHHHHHHHhcCCeeeEEEEeecCHHHHHhcc
Confidence 8999999989999999999999999999999999999999999999999998 99999999
Q ss_pred chHHHHHHHHHHHhhhChHHHHHHHHHHHHhccCCcccccC-hhHHHHHHHHHHhhhhccC
Q 047161 61 RSFHEAFAKHEEAFRESTEKVQNWRHALTEVANPSGWHLKD-RHEVEFIQEIVKEISRKKG 120 (720)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~v~~w~~~l~~~~~~~g~~~~~-~~e~~~i~~i~~~i~~~~~ 120 (720)
|+|++||.+|++++ +.+++++||+||++||+++||++.+ ..|+++|++|+++|+++++
T Consensus 143 g~fg~af~~~~~~~--~~~~v~~Wr~AL~~va~lsG~~~~~~~~e~~~i~~Iv~di~~kl~ 201 (204)
T 3ozi_A 143 GCYKKAFRKHANKF--DGQTIQNWKDALKKVGDLKGWHIGKNDKQGAIADKVSADIWSHIS 201 (204)
T ss_dssp TTHHHHHHHHTTTS--CHHHHHHHHHHHHHHHTSCBEEECTTSCHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHhh--CHHHHHHHHHHHHHHhccCceecCCCCCHHHHHHHHHHHHHHHhc
Confidence 99999999999875 4589999999999999999999988 5688999999999998764
No 4
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.92 E-value=7.9e-26 Score=264.84 Aligned_cols=77 Identities=14% Similarity=0.117 Sum_probs=58.2
Q ss_pred ccEEECCCCCCc-cccccccCCCCCceeeccccccccccCCc-c--cccceEeeecCcccccchhhccCchhHhhhhhhc
Q 047161 623 LKKLNLRRNNFV-SLRGTINHLPKFKHLKLDDCKRLRSLSEL-P--SDIKKVRVHGCTSLATISDALRSCNSATSRIFCI 698 (720)
Q Consensus 623 L~~L~Ls~n~l~-~lp~~i~~l~~L~~L~L~~c~~L~~lp~l-p--~~L~~L~l~~c~~L~~lp~~~~~~~~L~~l~~~~ 698 (720)
|+.|+|++|+++ .+|.+++++++|+.|+|++|..-..+|.- . ++|+.|++++|..-+.+|..+.++++|+.+++++
T Consensus 634 L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~ 713 (768)
T 3rgz_A 634 MMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSN 713 (768)
T ss_dssp CCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCS
T ss_pred ccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcC
Confidence 367888888887 67888888888888888888655456532 1 5688888888877778888888888888877776
Q ss_pred c
Q 047161 699 N 699 (720)
Q Consensus 699 n 699 (720)
|
T Consensus 714 N 714 (768)
T 3rgz_A 714 N 714 (768)
T ss_dssp S
T ss_pred C
Confidence 6
No 5
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.92 E-value=1.4e-25 Score=256.69 Aligned_cols=333 Identities=13% Similarity=0.130 Sum_probs=259.0
Q ss_pred HHHHHhhhcCCchh-----------hhhhhcCCCCCC--CccccchhhhhHHHHhcC--cchhccCCcceEEEeccc-cC
Q 047161 332 LDVLEISFNGLKGR-----------IEIMRKSPEEPG--KCSRLWKVADVSHVLRRN--TAFLKMTNLRLLKIHNLQ-LP 395 (720)
Q Consensus 332 l~~L~lSyn~L~~~-----------~~~~~~~p~~~~--~l~~Lw~~~~~~~~~~~~--~~~~~l~~L~~L~l~~~~-l~ 395 (720)
++.|++++|.+.+. ....+..|..++ .+.+|..+....+.+.+. ..|.++++|+.|++++|. +.
T Consensus 208 L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~ 287 (636)
T 4eco_A 208 LRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGIS 287 (636)
T ss_dssp CCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSC
T ss_pred CCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCc
Confidence 56788999999883 000011388888 888888887766665543 378899999999999987 43
Q ss_pred -----CcccCc-----cccceEEEecCCCCCCCCC--CC-CCCcceEeeCCCCchhHHhhhccCccccCCCCCCCCceee
Q 047161 396 -----AGLESL-----SDELRLLQWHGYPLKSLPS--SM-EMDKTLECNMCYRRIEQFWKGIKNLIRTPDFTGAPNLEEL 462 (720)
Q Consensus 396 -----~~~~~l-----~~~l~~L~~~~~~~~~lp~--~~-~~~~l~~L~l~~~~i~~l~~~~~~l~~~~~~~~l~~L~~L 462 (720)
..+..+ ...++.|++++|.+..+|. .+ ...++..|++++|.+.. .+|.++.+++|++|
T Consensus 288 ~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g---------~ip~~~~l~~L~~L 358 (636)
T 4eco_A 288 GEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEG---------KLPAFGSEIKLASL 358 (636)
T ss_dssp HHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEE---------ECCCCEEEEEESEE
T ss_pred cccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCcc---------chhhhCCCCCCCEE
Confidence 333333 2569999999999999998 55 45788999999887651 23467888899999
Q ss_pred ecCCCCCCCCCCCCcccCccchhhhHHHHhccCCC-CcEEeccCCCCCcccCCCCCCCC--CCCEEeccCCCCCcccCcC
Q 047161 463 ILDGCKRLQNCTSLTTLPREIATESLQKLIELLTG-LVFLNLNDCKILVRLPSTINGWK--SLRTVNLSRCSKLENMPES 539 (720)
Q Consensus 463 ~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~-L~~L~Ls~n~~~~~lp~~i~~l~--~L~~L~L~~~~~l~~lp~~ 539 (720)
++++|. +..+|.. ++.+++ |++|++++|.+. .+|..++.++ +|++|++++|.+.+..|..
T Consensus 359 ~L~~N~-------l~~lp~~---------l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~ 421 (636)
T 4eco_A 359 NLAYNQ-------ITEIPAN---------FCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKN 421 (636)
T ss_dssp ECCSSE-------EEECCTT---------SEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCS
T ss_pred ECCCCc-------cccccHh---------hhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhh
Confidence 999987 5677777 888998 999999999854 8998887755 8999999999988888888
Q ss_pred cC-------CCCCCCEEeccCcccccCCccccCCcCCceEEEeecCCCCCCCCCcccccc-------cccccccCCCCcc
Q 047161 540 LG-------QMESLEELDVSGTVIRQPVPSIFFPSRILKVYLFVDTRDHRTSSSSWHLWF-------PFSLMQKGSSDSM 605 (720)
Q Consensus 540 ~~-------~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~-------~l~~l~l~~~~~~ 605 (720)
+. .+++|++|++++|.+..+|+..+..+++|+.|++++|.+..++...+.... .++.++++.+...
T Consensus 422 l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 501 (636)
T 4eco_A 422 FDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT 501 (636)
T ss_dssp SCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC
T ss_pred hcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCC
Confidence 88 888999999999999988888777668999999999999987777766554 8888999888776
Q ss_pred cccCCCCC--CCCCCCcccccEEECCCCCCccccccccCCCCCceeecccc------ccccccCCc---ccccceEeeec
Q 047161 606 ALMLPSLS--GLCSLTELNLKKLNLRRNNFVSLRGTINHLPKFKHLKLDDC------KRLRSLSEL---PSDIKKVRVHG 674 (720)
Q Consensus 606 ~~~~~~l~--~l~~L~~L~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c------~~L~~lp~l---p~~L~~L~l~~ 674 (720)
. .+..+. .+++| +.|+|++|.++.+|..+.++++|+.|+|++| .....+|.- .++|+.|++++
T Consensus 502 ~-lp~~~~~~~l~~L-----~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~ 575 (636)
T 4eco_A 502 K-LSDDFRATTLPYL-----VGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGS 575 (636)
T ss_dssp B-CCGGGSTTTCTTC-----CEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCS
T ss_pred c-cChhhhhccCCCc-----CEEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCC
Confidence 2 222344 77776 7888999999999999999999999999654 334455531 15699999998
Q ss_pred CcccccchhhccCchhHhhhhhhcc
Q 047161 675 CTSLATISDALRSCNSATSRIFCIN 699 (720)
Q Consensus 675 c~~L~~lp~~~~~~~~L~~l~~~~n 699 (720)
|.. +.+|..+. ++|+.|++.+|
T Consensus 576 N~l-~~ip~~~~--~~L~~L~Ls~N 597 (636)
T 4eco_A 576 NDI-RKVNEKIT--PNISVLDIKDN 597 (636)
T ss_dssp SCC-CBCCSCCC--TTCCEEECCSC
T ss_pred CcC-CccCHhHh--CcCCEEECcCC
Confidence 875 88987765 78888777766
No 6
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.91 E-value=3.5e-24 Score=244.83 Aligned_cols=100 Identities=16% Similarity=0.091 Sum_probs=54.9
Q ss_pred HHHHHhhhcCCchhhhhhhcCCCCCCCccccchhhhhHHHHhcC--cchhccCCcceEEEeccccCC----cccCccccc
Q 047161 332 LDVLEISFNGLKGRIEIMRKSPEEPGKCSRLWKVADVSHVLRRN--TAFLKMTNLRLLKIHNLQLPA----GLESLSDEL 405 (720)
Q Consensus 332 l~~L~lSyn~L~~~~~~~~~~p~~~~~l~~Lw~~~~~~~~~~~~--~~~~~l~~L~~L~l~~~~l~~----~~~~l~~~l 405 (720)
++.|++|+|.+.... |..+..+.+|..++...+.+... ..|+++++|++|++++|.+.. .+.. ...+
T Consensus 59 L~~L~Ls~n~i~~~~------~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~-l~~L 131 (606)
T 3t6q_A 59 LTFLDLTRCQIYWIH------EDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHN-QKTL 131 (606)
T ss_dssp CSEEECTTCCCCEEC------TTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTT-CTTC
T ss_pred ceEEECCCCccceeC------hhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhcc-CCcc
Confidence 445556666555443 55555555555555544444332 246666666666666665532 1222 2346
Q ss_pred eEEEecCCCCCCC--CCCCCCCcceEeeCCCCchh
Q 047161 406 RLLQWHGYPLKSL--PSSMEMDKTLECNMCYRRIE 438 (720)
Q Consensus 406 ~~L~~~~~~~~~l--p~~~~~~~l~~L~l~~~~i~ 438 (720)
+.|++++|.+..+ |..+...+++.|++++|.+.
T Consensus 132 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 166 (606)
T 3t6q_A 132 ESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIH 166 (606)
T ss_dssp CEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCC
T ss_pred cEEECCCCcccccCcccccCCcccCEEEcccCccc
Confidence 6677776666654 44455566666666666554
No 7
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.91 E-value=3.1e-24 Score=250.08 Aligned_cols=209 Identities=16% Similarity=0.155 Sum_probs=117.1
Q ss_pred chhccCCcceEEEeccccCC---------------------ccc--CccccceEEEecCCC-CCCCCCCCC-CCcceEee
Q 047161 377 AFLKMTNLRLLKIHNLQLPA---------------------GLE--SLSDELRLLQWHGYP-LKSLPSSME-MDKTLECN 431 (720)
Q Consensus 377 ~~~~l~~L~~L~l~~~~l~~---------------------~~~--~l~~~l~~L~~~~~~-~~~lp~~~~-~~~l~~L~ 431 (720)
.|+++++|+.|++++|.+.. .+. .+ ..++.|++++|. ...+|..+. ..+++.|+
T Consensus 443 ~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L-~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~ 521 (876)
T 4ecn_A 443 AIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNL-KDLTDVELYNCPNMTQLPDFLYDLPELQSLN 521 (876)
T ss_dssp GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGC-TTCCEEEEESCTTCCSCCGGGGGCSSCCEEE
T ss_pred HHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccC-CCCCEEECcCCCCCccChHHHhCCCCCCEEE
Confidence 57889999999999986644 222 33 459999999887 567887664 67899999
Q ss_pred CCCCc-hhH--Hhhhcc--------------------CccccCC---CCCCCCceeeecCCCCCCCCCCCCcccCccchh
Q 047161 432 MCYRR-IEQ--FWKGIK--------------------NLIRTPD---FTGAPNLEELILDGCKRLQNCTSLTTLPREIAT 485 (720)
Q Consensus 432 l~~~~-i~~--l~~~~~--------------------~l~~~~~---~~~l~~L~~L~L~~~~~l~~~~~L~~lp~~~~~ 485 (720)
+++|+ +.. +..... .+..+|. ++.+++|+.|+|++|. +..+| .
T Consensus 522 Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~-------l~~lp-~--- 590 (876)
T 4ecn_A 522 IACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNK-------VRHLE-A--- 590 (876)
T ss_dssp CTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSC-------CCBCC-C---
T ss_pred CcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCC-------cccch-h---
Confidence 99987 543 322211 2223333 4555555555555554 23333 2
Q ss_pred hhHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCC-CCEEeccCCCCCcccCcCcCCCCC--CCEEeccCcccccCCcc
Q 047161 486 ESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKS-LRTVNLSRCSKLENMPESLGQMES--LEELDVSGTVIRQPVPS 562 (720)
Q Consensus 486 ~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~-L~~L~L~~~~~l~~lp~~~~~L~~--L~~L~L~~n~l~~~~~~ 562 (720)
++.+++|+.|+|++|.+. .+|..++++++ |++|+|++|.+. .+|..+..++. |+.|++++|.+.+.+|.
T Consensus 591 ------~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~ 662 (876)
T 4ecn_A 591 ------FGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRN 662 (876)
T ss_dssp ------CCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSS
T ss_pred ------hcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCcccc
Confidence 555555566666555533 55555555555 666666555433 55554444432 55555555555444332
Q ss_pred ccC-----CcCCceEEEeecCCCCCCCCCcccccccccccccCCCCcc
Q 047161 563 IFF-----PSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSM 605 (720)
Q Consensus 563 ~~~-----~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~ 605 (720)
+.. .+.+|+.|++++|.+..++...+..+..|+.++++.+.+.
T Consensus 663 l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~ 710 (876)
T 4ecn_A 663 ISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT 710 (876)
T ss_dssp CSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS
T ss_pred chhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC
Confidence 220 0134555555555555444444444555555555554443
No 8
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.91 E-value=3.3e-24 Score=265.58 Aligned_cols=234 Identities=18% Similarity=0.236 Sum_probs=179.6
Q ss_pred ccCCCCCccccchhHHHHHHhhhccCCCeEEEEEecCCCcc---------------------------ccc--hhcHHHH
Q 047161 123 TLGILDDLVEMNSRLKKLRLLLDAESRDVRMIGICGMGGVE---------------------------LSE--KDGLIAL 173 (720)
Q Consensus 123 ~~~~~~~~vG~~~~~~~i~~~L~~~~~~~~vi~I~G~gGi~---------------------------vs~--~~~~~~~ 173 (720)
.+.....+|||++++++|.++|...++++++|+|+||||++ +++ ..+....
T Consensus 119 ~p~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 198 (1249)
T 3sfz_A 119 VPQRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMK 198 (1249)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHH
T ss_pred CCCCCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHH
Confidence 34456779999999999999997767889999999999991 112 1223334
Q ss_pred HHHHHHhhhhccc---ceeccchhhHHHHHHHHhcC--CeEEEEecCCcHHHHHHHhccCCCCCCCCeEEEEcCChhhhh
Q 047161 174 QKQLLSKTLMEID---IEIRNDFDGIKMIKRELRRR--NVLVVIDDAVHIRQLNRLAGKHSWFGSGSRIIIPTRDEHLLR 248 (720)
Q Consensus 174 ~~~il~~~~~~~~---~~~~~~~~~~~~l~~~l~~k--r~LlVLDdv~~~~~~~~l~~~~~~~~~gsrIivTTR~~~v~~ 248 (720)
.+.++..+..... ....+.+.....++..+.+| ||||||||||+.++|+.+ ++|||||||||++.|+.
T Consensus 199 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~-------~~~~~ilvTtR~~~~~~ 271 (1249)
T 3sfz_A 199 LQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF-------DNQCQILLTTRDKSVTD 271 (1249)
T ss_dssp HHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTT-------CSSCEEEEEESSTTTTT
T ss_pred HHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhh-------cCCCEEEEEcCCHHHHH
Confidence 4555555322211 11234455666777777666 999999999999887764 68999999999999995
Q ss_pred h-ccccceEecCC-CCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHhCCCchHHHHhhhhccCCCHHHHHHHHhhhhcC
Q 047161 249 T-LRVDGVYKVEK-LDDDEALELFNKRAFDGQPSKDYVELIKRIVKYADGLPFALETLGSVLFGRSVDGWRSTLERLNKH 326 (720)
Q Consensus 249 ~-~~~~~~~~l~~-L~~~~s~~Lf~~~af~~~~~~~~~~~~~~i~~~c~glPLai~~~g~~l~~k~~~~W~~~l~~l~~~ 326 (720)
. ++..+.|++++ |+.+||++||...++.. .+++.+.+++|+++|+|+||||+++|+.|+.+. ..|+..++.+...
T Consensus 272 ~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~--~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~-~~~~~~l~~l~~~ 348 (1249)
T 3sfz_A 272 SVMGPKHVVPVESGLGREKGLEILSLFVNMK--KEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP-NRWAYYLRQLQNK 348 (1249)
T ss_dssp TCCSCBCCEECCSSCCHHHHHHHHHHHHTSC--STTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS-SCHHHHHHHHHSC
T ss_pred hhcCCceEEEecCCCCHHHHHHHHHHhhCCC--hhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh-hHHHHHHHHHhhh
Confidence 5 56678999996 99999999999998654 234456789999999999999999999998865 5799998877543
Q ss_pred C-----------chhHHHHHHhhhcCCchh----hhhhhcCCCCCC----Cccccchhh
Q 047161 327 S-----------ADEILDVLEISFNGLKGR----IEIMRKSPEEPG----KCSRLWKVA 366 (720)
Q Consensus 327 ~-----------~~~il~~L~lSyn~L~~~----~~~~~~~p~~~~----~l~~Lw~~~ 366 (720)
. ...+..+|++||+.|+.. +.+++.||++.. .+..+|.++
T Consensus 349 ~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~ 407 (1249)
T 3sfz_A 349 QFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLE 407 (1249)
T ss_dssp CCCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCC
T ss_pred hhhhcccccccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCC
Confidence 2 246899999999999988 778999998753 567777643
No 9
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.91 E-value=3.3e-25 Score=259.54 Aligned_cols=331 Identities=18% Similarity=0.197 Sum_probs=164.4
Q ss_pred HHHHHhhhcCCchhhhhhhcCCCCCCCccccchhhhhHHHHhcC--cchhccCCcceEEEeccccCCcccC-ccccceEE
Q 047161 332 LDVLEISFNGLKGRIEIMRKSPEEPGKCSRLWKVADVSHVLRRN--TAFLKMTNLRLLKIHNLQLPAGLES-LSDELRLL 408 (720)
Q Consensus 332 l~~L~lSyn~L~~~~~~~~~~p~~~~~l~~Lw~~~~~~~~~~~~--~~~~~l~~L~~L~l~~~~l~~~~~~-l~~~l~~L 408 (720)
++.|++++|.+.+.. |. ++.+..|..++...+.+.+. ..|..+++|+.|++++|.+...+.. ....++.|
T Consensus 202 L~~L~Ls~n~l~~~~------~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L 274 (768)
T 3rgz_A 202 LEFLDVSSNNFSTGI------PF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYL 274 (768)
T ss_dssp CCEEECCSSCCCSCC------CB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEE
T ss_pred CCEEECcCCcCCCCC------cc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCccccCCCCEE
Confidence 445566666665442 33 55555555555444444332 2566677777777777655321111 22446777
Q ss_pred EecCCCCC-CCCCCCCC--CcceEeeCCCCchhHHhhhccCccccCCCCCCCCceeeecCCCCCCCCCCCCc-ccCccch
Q 047161 409 QWHGYPLK-SLPSSMEM--DKTLECNMCYRRIEQFWKGIKNLIRTPDFTGAPNLEELILDGCKRLQNCTSLT-TLPREIA 484 (720)
Q Consensus 409 ~~~~~~~~-~lp~~~~~--~~l~~L~l~~~~i~~l~~~~~~l~~~~~~~~l~~L~~L~L~~~~~l~~~~~L~-~lp~~~~ 484 (720)
++++|.+. .+|..+.. .++++|++++|.+... .++.|+.+++|++|++++|. +. .+|...
T Consensus 275 ~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~--------~p~~~~~l~~L~~L~L~~n~-------l~~~ip~~~- 338 (768)
T 3rgz_A 275 SLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGA--------VPPFFGSCSLLESLALSSNN-------FSGELPMDT- 338 (768)
T ss_dssp ECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEEC--------CCGGGGGCTTCCEEECCSSE-------EEEECCHHH-
T ss_pred ECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCc--------cchHHhcCCCccEEECCCCc-------ccCcCCHHH-
Confidence 77777665 66665532 5677777777665422 12235666677777777665 11 222211
Q ss_pred hhhHHHHhccCCCCcEEeccCCCCCcccCCCCCCCC-CCCEEeccCCCCCcccCcCcCC--CCCCCEEeccCcccccCCc
Q 047161 485 TESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWK-SLRTVNLSRCSKLENMPESLGQ--MESLEELDVSGTVIRQPVP 561 (720)
Q Consensus 485 ~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~-~L~~L~L~~~~~l~~lp~~~~~--L~~L~~L~L~~n~l~~~~~ 561 (720)
++.+++|++|++++|.+.+.+|..+++++ +|++|++++|.+.+.+|..+.. +++|++|++++|.+.+..|
T Consensus 339 -------l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p 411 (768)
T 3rgz_A 339 -------LLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIP 411 (768)
T ss_dssp -------HTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECC
T ss_pred -------HhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccC
Confidence 44455555555555554445555555544 5555555555444444444443 4455555555555544444
Q ss_pred cccCCcCCceEEEeecCCCCCCCCCcccccccccccccCCCCcccccCCCCCCCCCCCcccccEEECCCCCCc-cccccc
Q 047161 562 SIFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSLSGLCSLTELNLKKLNLRRNNFV-SLRGTI 640 (720)
Q Consensus 562 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~L~Ls~n~l~-~lp~~i 640 (720)
..+..+++|+.|++++|.+.+..+..+..+..++.+.+..+......+..+..+++| +.|++++|.++ .+|.++
T Consensus 412 ~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L-----~~L~L~~N~l~~~~p~~l 486 (768)
T 3rgz_A 412 PTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTL-----ETLILDFNDLTGEIPSGL 486 (768)
T ss_dssp GGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTC-----CEEECCSSCCCSCCCGGG
T ss_pred HHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCc-----eEEEecCCcccCcCCHHH
Confidence 333333555555555555544444445555555555554444433333334444443 34444444444 344444
Q ss_pred cCCCCCceeeccccccccccCCcc---cccceEeeecCcccccchhhccCchhHhhhhhh
Q 047161 641 NHLPKFKHLKLDDCKRLRSLSELP---SDIKKVRVHGCTSLATISDALRSCNSATSRIFC 697 (720)
Q Consensus 641 ~~l~~L~~L~L~~c~~L~~lp~lp---~~L~~L~l~~c~~L~~lp~~~~~~~~L~~l~~~ 697 (720)
.++++|+.|+|++|+....+|... ++|+.|++++|...+.+|..+.++++|+.+++.
T Consensus 487 ~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls 546 (768)
T 3rgz_A 487 SNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLN 546 (768)
T ss_dssp GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECC
T ss_pred hcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECC
Confidence 445555555555544322333211 334455555544444444444444444444443
No 10
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.91 E-value=5.9e-24 Score=243.32 Aligned_cols=304 Identities=18% Similarity=0.212 Sum_probs=208.2
Q ss_pred chhccCCcceEEEeccccCC---------------------ccc--CccccceEEEecCCCC-CCCCCCCC-CCcceEee
Q 047161 377 AFLKMTNLRLLKIHNLQLPA---------------------GLE--SLSDELRLLQWHGYPL-KSLPSSME-MDKTLECN 431 (720)
Q Consensus 377 ~~~~l~~L~~L~l~~~~l~~---------------------~~~--~l~~~l~~L~~~~~~~-~~lp~~~~-~~~l~~L~ 431 (720)
.|+++++|++|++++|.+.. .+. .+ ..++.|++++|.+ ..+|..+. ..+++.|+
T Consensus 201 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l-~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 279 (636)
T 4eco_A 201 AVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNL-KDLTDVEVYNCPNLTKLPTFLKALPEMQLIN 279 (636)
T ss_dssp GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGC-TTCCEEEEECCTTCSSCCTTTTTCSSCCEEE
T ss_pred HHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhccc-CCCCEEEecCCcCCccChHHHhcCCCCCEEE
Confidence 58889999999999986544 333 33 4599999999875 57887775 67899999
Q ss_pred CCCCc-hhH--Hhhhcc-------------------CccccCC---CCCCCCceeeecCCCCCCCCCCCCc-ccCccchh
Q 047161 432 MCYRR-IEQ--FWKGIK-------------------NLIRTPD---FTGAPNLEELILDGCKRLQNCTSLT-TLPREIAT 485 (720)
Q Consensus 432 l~~~~-i~~--l~~~~~-------------------~l~~~~~---~~~l~~L~~L~L~~~~~l~~~~~L~-~lp~~~~~ 485 (720)
+++|+ +.. +..... .+..+|. ++.+++|++|++++|. +. .+| .
T Consensus 280 Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~-------l~g~ip-~--- 348 (636)
T 4eco_A 280 VACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQ-------LEGKLP-A--- 348 (636)
T ss_dssp CTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCC-------CEEECC-C---
T ss_pred CcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCc-------Cccchh-h---
Confidence 99997 553 322211 2223333 5555566666666555 33 445 3
Q ss_pred hhHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCC-CCEEeccCCCCCcccCcCcCCCC--CCCEEeccCcccccCCcc
Q 047161 486 ESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKS-LRTVNLSRCSKLENMPESLGQME--SLEELDVSGTVIRQPVPS 562 (720)
Q Consensus 486 ~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~-L~~L~L~~~~~l~~lp~~~~~L~--~L~~L~L~~n~l~~~~~~ 562 (720)
++.+++|++|++++|.+ ..+|..++++++ |++|++++|.+. .+|..++.++ +|++|++++|.+.+..|.
T Consensus 349 ------~~~l~~L~~L~L~~N~l-~~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~ 420 (636)
T 4eco_A 349 ------FGSEIKLASLNLAYNQI-TEIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGK 420 (636)
T ss_dssp ------CEEEEEESEEECCSSEE-EECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTC
T ss_pred ------hCCCCCCCEEECCCCcc-ccccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchh
Confidence 66677777777777763 367777777777 777777777544 6777666544 777777777777775554
Q ss_pred ccC-------CcCCceEEEeecCCCCCCCCCcccccccccccccCCCCcccccCCCCCCCC-CCCcc-cccEEECCCCCC
Q 047161 563 IFF-------PSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSLSGLC-SLTEL-NLKKLNLRRNNF 633 (720)
Q Consensus 563 ~~~-------~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~l~~l~-~L~~L-~L~~L~Ls~n~l 633 (720)
.+. .+.+|+.|++++|.+..++...+..+..++.+++..+.........+..+. .++.+ +|+.|+|++|.+
T Consensus 421 ~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l 500 (636)
T 4eco_A 421 NFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKL 500 (636)
T ss_dssp SSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCC
T ss_pred hhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcC
Confidence 443 336777777777777776666666677777777777766522221222221 00000 348899999999
Q ss_pred cccccccc--CCCCCceeeccccccccccCCcc---cccceEeee------cCcccccchhhccCchhHhhhhhhcccc
Q 047161 634 VSLRGTIN--HLPKFKHLKLDDCKRLRSLSELP---SDIKKVRVH------GCTSLATISDALRSCNSATSRIFCINCP 701 (720)
Q Consensus 634 ~~lp~~i~--~l~~L~~L~L~~c~~L~~lp~lp---~~L~~L~l~------~c~~L~~lp~~~~~~~~L~~l~~~~nc~ 701 (720)
+.+|..+. .+++|+.|+|++|+ +..+|.-. ++|+.|+++ ++...+.+|..+.++++|+.|++.+|--
T Consensus 501 ~~lp~~~~~~~l~~L~~L~Ls~N~-l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 578 (636)
T 4eco_A 501 TKLSDDFRATTLPYLVGIDLSYNS-FSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI 578 (636)
T ss_dssp CBCCGGGSTTTCTTCCEEECCSSC-CSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC
T ss_pred CccChhhhhccCCCcCEEECCCCC-CCCcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC
Confidence 99998887 99999999999995 55566422 679999995 4556788999999999999988876643
No 11
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.90 E-value=1.9e-24 Score=251.93 Aligned_cols=332 Identities=13% Similarity=0.121 Sum_probs=250.8
Q ss_pred HHHHHhhhcCCchhhh-----------hhhcCCCCCC--CccccchhhhhHHHHhcC--cchhccCCcceEEEeccc-cC
Q 047161 332 LDVLEISFNGLKGRIE-----------IMRKSPEEPG--KCSRLWKVADVSHVLRRN--TAFLKMTNLRLLKIHNLQ-LP 395 (720)
Q Consensus 332 l~~L~lSyn~L~~~~~-----------~~~~~p~~~~--~l~~Lw~~~~~~~~~~~~--~~~~~l~~L~~L~l~~~~-l~ 395 (720)
++.|++++|.|.+..+ .....|..++ .+.+|..+....+.+.+. ..|.++++|+.|++++|. +.
T Consensus 450 L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~ls 529 (876)
T 4ecn_A 450 LQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGIS 529 (876)
T ss_dssp CCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSC
T ss_pred CCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcc
Confidence 5778999999988200 0011388877 888888887776655443 478999999999999997 43
Q ss_pred -----CcccCcc------ccceEEEecCCCCCCCCC--CC-CCCcceEeeCCCCchhHHhhhccCccccCCCCCCCCcee
Q 047161 396 -----AGLESLS------DELRLLQWHGYPLKSLPS--SM-EMDKTLECNMCYRRIEQFWKGIKNLIRTPDFTGAPNLEE 461 (720)
Q Consensus 396 -----~~~~~l~------~~l~~L~~~~~~~~~lp~--~~-~~~~l~~L~l~~~~i~~l~~~~~~l~~~~~~~~l~~L~~ 461 (720)
..+..+. ..++.|++++|.+..+|. .+ ...++..|++++|.+.. +|.|+.+++|+.
T Consensus 530 g~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~----------lp~~~~L~~L~~ 599 (876)
T 4ecn_A 530 AAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRH----------LEAFGTNVKLTD 599 (876)
T ss_dssp HHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCB----------CCCCCTTSEESE
T ss_pred cccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCccc----------chhhcCCCcceE
Confidence 3333322 369999999999999998 55 46789999999987753 357899999999
Q ss_pred eecCCCCCCCCCCCCcccCccchhhhHHHHhccCCC-CcEEeccCCCCCcccCCCCCCCCC--CCEEeccCCCCCcccCc
Q 047161 462 LILDGCKRLQNCTSLTTLPREIATESLQKLIELLTG-LVFLNLNDCKILVRLPSTINGWKS--LRTVNLSRCSKLENMPE 538 (720)
Q Consensus 462 L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~-L~~L~Ls~n~~~~~lp~~i~~l~~--L~~L~L~~~~~l~~lp~ 538 (720)
|+|++|. +..+|.. ++.+++ |++|+|++|.+ ..+|..++.++. |++|++++|.+.+.+|.
T Consensus 600 L~Ls~N~-------l~~lp~~---------l~~l~~~L~~L~Ls~N~L-~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~ 662 (876)
T 4ecn_A 600 LKLDYNQ-------IEEIPED---------FCAFTDQVEGLGFSHNKL-KYIPNIFNAKSVYVMGSVDFSYNKIGSEGRN 662 (876)
T ss_dssp EECCSSC-------CSCCCTT---------SCEECTTCCEEECCSSCC-CSCCSCCCTTCSSCEEEEECCSSCTTTTSSS
T ss_pred EECcCCc-------cccchHH---------HhhccccCCEEECcCCCC-CcCchhhhccccCCCCEEECcCCcCCCcccc
Confidence 9999998 5677776 788888 99999999985 488988877755 99999999987776553
Q ss_pred ---CcC--CCCCCCEEeccCcccccCCccccCCcCCceEEEeecCCCCCCCCCcccccc-------cccccccCCCCccc
Q 047161 539 ---SLG--QMESLEELDVSGTVIRQPVPSIFFPSRILKVYLFVDTRDHRTSSSSWHLWF-------PFSLMQKGSSDSMA 606 (720)
Q Consensus 539 ---~~~--~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~-------~l~~l~l~~~~~~~ 606 (720)
.++ .+++|+.|++++|.+..+|+..+..+++|+.|++++|.+..++...+.... .|+.+++..+.+..
T Consensus 663 l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~ 742 (876)
T 4ecn_A 663 ISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS 742 (876)
T ss_dssp CSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCC
T ss_pred chhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCcc
Confidence 233 445899999999999988887775568999999999988877776665443 78888888887662
Q ss_pred ccCCCCC--CCCCCCcccccEEECCCCCCccccccccCCCCCceeeccccc------cccccCC-c--ccccceEeeecC
Q 047161 607 LMLPSLS--GLCSLTELNLKKLNLRRNNFVSLRGTINHLPKFKHLKLDDCK------RLRSLSE-L--PSDIKKVRVHGC 675 (720)
Q Consensus 607 ~~~~~l~--~l~~L~~L~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~------~L~~lp~-l--p~~L~~L~l~~c 675 (720)
.+..+. .+++| +.|+|++|.++.+|..+.++++|+.|+|++|+ ....+|. + .++|+.|++++|
T Consensus 743 -lp~~l~~~~l~~L-----~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N 816 (876)
T 4ecn_A 743 -LSDDFRATTLPYL-----SNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSN 816 (876)
T ss_dssp -CCGGGSTTTCTTC-----CEEECCSSCCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSS
T ss_pred -chHHhhhccCCCc-----CEEEeCCCCCCccchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCC
Confidence 222344 67766 77888899888888888889999999997743 3444442 1 156888999888
Q ss_pred cccccchhhccCchhHhhhhhhcc
Q 047161 676 TSLATISDALRSCNSATSRIFCIN 699 (720)
Q Consensus 676 ~~L~~lp~~~~~~~~L~~l~~~~n 699 (720)
.. +.+|..+. ++|+.|++++|
T Consensus 817 ~L-~~Ip~~l~--~~L~~LdLs~N 837 (876)
T 4ecn_A 817 DI-RKVDEKLT--PQLYILDIADN 837 (876)
T ss_dssp CC-CBCCSCCC--SSSCEEECCSC
T ss_pred CC-CccCHhhc--CCCCEEECCCC
Confidence 65 88887654 57887777655
No 12
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.90 E-value=4.3e-24 Score=242.68 Aligned_cols=216 Identities=19% Similarity=0.192 Sum_probs=162.8
Q ss_pred CCccccchhHHHHHHhhhccCCCeEEEEEecCCCc--------------------------cccchhcHHHHHHHHHHhh
Q 047161 128 DDLVEMNSRLKKLRLLLDAESRDVRMIGICGMGGV--------------------------ELSEKDGLIALQKQLLSKT 181 (720)
Q Consensus 128 ~~~vG~~~~~~~i~~~L~~~~~~~~vi~I~G~gGi--------------------------~vs~~~~~~~~~~~il~~~ 181 (720)
+..|||+.++++|.++|.. .++++||+|+||||+ ++++.++...+...++..+
T Consensus 128 k~~VGRe~eLeeL~elL~~-~d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL 206 (1221)
T 1vt4_I 128 KYNVSRLQPYLKLRQALLE-LRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLL 206 (1221)
T ss_dssp CSCCCCHHHHHHHHHHHHH-CCSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHhc-cCCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 4459999999999999864 245899999999999 2344455556666665542
Q ss_pred hhcc-----cce-----eccchhhHHHHHHHH---hcCCeEEEEecCCcHHHHHHHhccCCCCCCCCeEEEEcCChhhhh
Q 047161 182 LMEI-----DIE-----IRNDFDGIKMIKREL---RRRNVLVVIDDAVHIRQLNRLAGKHSWFGSGSRIIIPTRDEHLLR 248 (720)
Q Consensus 182 ~~~~-----~~~-----~~~~~~~~~~l~~~l---~~kr~LlVLDdv~~~~~~~~l~~~~~~~~~gsrIivTTR~~~v~~ 248 (720)
.... ..+ ..+.+.....+++.| .+||+||||||||+.++|+.+. +|||||||||++.++.
T Consensus 207 ~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f~-------pGSRILVTTRd~~Va~ 279 (1221)
T 1vt4_I 207 YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN-------LSCKILLTTRFKQVTD 279 (1221)
T ss_dssp HHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHHH-------SSCCEEEECSCSHHHH
T ss_pred hhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhhC-------CCeEEEEeccChHHHH
Confidence 1110 000 112334566777766 6799999999999999998762 7999999999999997
Q ss_pred hccccceEecC------CCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHhCCCchHHHHhhhhccCC--CHHHHHHHH
Q 047161 249 TLRVDGVYKVE------KLDDDEALELFNKRAFDGQPSKDYVELIKRIVKYADGLPFALETLGSVLFGR--SVDGWRSTL 320 (720)
Q Consensus 249 ~~~~~~~~~l~------~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~i~~~c~glPLai~~~g~~l~~k--~~~~W~~~l 320 (720)
.+.....|+++ +|+.+|||+||+++ |+.. ..++..++ |+|+||||+++|+.|+++ +.++|+..
T Consensus 280 ~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~-~g~~----~eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~eeW~~~- 350 (1221)
T 1vt4_I 280 FLSAATTTHISLDHHSMTLTPDEVKSLLLKY-LDCR----PQDLPREV---LTTNPRRLSIIAESIRDGLATWDNWKHV- 350 (1221)
T ss_dssp HHHHHSSCEEEECSSSSCCCHHHHHHHHHHH-HCCC----TTTHHHHH---CCCCHHHHHHHHHHHHHSCSSHHHHHHC-
T ss_pred hcCCCeEEEecCccccCCcCHHHHHHHHHHH-cCCC----HHHHHHHH---hCCCHHHHHHHHHHHhCCCCCHHHHhcC-
Confidence 66555578888 99999999999998 4322 12333343 999999999999999986 77889763
Q ss_pred hhhhcCCchhHHHHHHhhhcCCchh-----hhhhhcCCCCCC----Cccccchhh
Q 047161 321 ERLNKHSADEILDVLEISFNGLKGR-----IEIMRKSPEEPG----KCSRLWKVA 366 (720)
Q Consensus 321 ~~l~~~~~~~il~~L~lSyn~L~~~-----~~~~~~~p~~~~----~l~~Lw~~~ 366 (720)
....+..+|++||+.|+.. +.+++.||++.. .+..+|.++
T Consensus 351 ------~~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~ae 399 (1221)
T 1vt4_I 351 ------NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDV 399 (1221)
T ss_dssp ------SCHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSS
T ss_pred ------ChhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCC
Confidence 3578999999999999876 468999998653 467888866
No 13
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.90 E-value=2.8e-22 Score=219.47 Aligned_cols=343 Identities=17% Similarity=0.160 Sum_probs=173.2
Q ss_pred HHHHHhhhcCCchhhhhhhcCCCCCCCccccchhhhhHHHHhcC--cchhccCC-------------cceEEEeccccCC
Q 047161 332 LDVLEISFNGLKGRIEIMRKSPEEPGKCSRLWKVADVSHVLRRN--TAFLKMTN-------------LRLLKIHNLQLPA 396 (720)
Q Consensus 332 l~~L~lSyn~L~~~~~~~~~~p~~~~~l~~Lw~~~~~~~~~~~~--~~~~~l~~-------------L~~L~l~~~~l~~ 396 (720)
++.|.+++|.+ +.. |..++++.+|..++...+.+.+. ..++++.+ ++.|+++++.+..
T Consensus 13 L~~L~l~~n~l-~~i------P~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~ 85 (454)
T 1jl5_A 13 LQEPLRHSSNL-TEM------PVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS 85 (454)
T ss_dssp ----------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC
T ss_pred chhhhcccCch-hhC------ChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc
Confidence 34455555555 232 55555555555555444444321 12333322 3555555555432
Q ss_pred cccCccccceEEEecCCCCCCCCCCCCCCcceEeeCCCCchhHHhh----------hccCccccCCCCCCCCceeeecCC
Q 047161 397 GLESLSDELRLLQWHGYPLKSLPSSMEMDKTLECNMCYRRIEQFWK----------GIKNLIRTPDFTGAPNLEELILDG 466 (720)
Q Consensus 397 ~~~~l~~~l~~L~~~~~~~~~lp~~~~~~~l~~L~l~~~~i~~l~~----------~~~~l~~~~~~~~l~~L~~L~L~~ 466 (720)
+...+..++.|++++|.++.+|... .+++.|++++|.+..+.. ..+.+..+|.|+.+++|++|++++
T Consensus 86 -lp~~~~~L~~L~l~~n~l~~lp~~~--~~L~~L~l~~n~l~~l~~~~~~L~~L~L~~n~l~~lp~~~~l~~L~~L~l~~ 162 (454)
T 1jl5_A 86 -LPELPPHLESLVASCNSLTELPELP--QSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDN 162 (454)
T ss_dssp -CCSCCTTCSEEECCSSCCSSCCCCC--TTCCEEECCSSCCSCCCSCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCS
T ss_pred -CCCCcCCCCEEEccCCcCCcccccc--CCCcEEECCCCccCcccCCCCCCCEEECcCCCCCCCcccCCCCCCCEEECCC
Confidence 2223444555555555555555432 344444444443332211 111233456788889999999998
Q ss_pred CCCCCCC----CCCcccC--ccchhhhHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCCCcccCcCc
Q 047161 467 CKRLQNC----TSLTTLP--REIATESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMPESL 540 (720)
Q Consensus 467 ~~~l~~~----~~L~~lp--~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~ 540 (720)
|. +..+ .+|+.+. .+.. ..+| .++.+++|++|++++|.+ ..+|... ++|++|++++|.+. .+|. +
T Consensus 163 N~-l~~lp~~~~~L~~L~L~~n~l-~~l~-~~~~l~~L~~L~l~~N~l-~~l~~~~---~~L~~L~l~~n~l~-~lp~-~ 233 (454)
T 1jl5_A 163 NS-LKKLPDLPPSLEFIAAGNNQL-EELP-ELQNLPFLTAIYADNNSL-KKLPDLP---LSLESIVAGNNILE-ELPE-L 233 (454)
T ss_dssp SC-CSCCCCCCTTCCEEECCSSCC-SSCC-CCTTCTTCCEEECCSSCC-SSCCCCC---TTCCEEECCSSCCS-SCCC-C
T ss_pred Cc-CcccCCCcccccEEECcCCcC-CcCc-cccCCCCCCEEECCCCcC-CcCCCCc---CcccEEECcCCcCC-cccc-c
Confidence 86 2111 1111110 0000 0122 256667777777777663 3355432 46777777776443 6663 7
Q ss_pred CCCCCCCEEeccCcccccCCccccCCcCCceEEEeecCCCCCCCCCcccccccccccccCCCCcccccCCCCCCCCCCCc
Q 047161 541 GQMESLEELDVSGTVIRQPVPSIFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSLSGLCSLTE 620 (720)
Q Consensus 541 ~~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~l~~l~~L~~ 620 (720)
+.+++|++|++++|.+.+++.. +++|+.|++++|.+.+++.. ...++.++++.+...... .+ .++|+.
T Consensus 234 ~~l~~L~~L~l~~N~l~~l~~~----~~~L~~L~l~~N~l~~l~~~----~~~L~~L~ls~N~l~~l~--~~--~~~L~~ 301 (454)
T 1jl5_A 234 QNLPFLTTIYADNNLLKTLPDL----PPSLEALNVRDNYLTDLPEL----PQSLTFLDVSENIFSGLS--EL--PPNLYY 301 (454)
T ss_dssp TTCTTCCEEECCSSCCSSCCSC----CTTCCEEECCSSCCSCCCCC----CTTCCEEECCSSCCSEES--CC--CTTCCE
T ss_pred CCCCCCCEEECCCCcCCccccc----ccccCEEECCCCcccccCcc----cCcCCEEECcCCccCccc--Cc--CCcCCE
Confidence 7788888888888877776542 26777777777776664432 245666666665544311 00 012222
Q ss_pred c---------------cccEEECCCCCCccccccccCCCCCceeeccccccccccCCcccccceEeeecCcccc--cchh
Q 047161 621 L---------------NLKKLNLRRNNFVSLRGTINHLPKFKHLKLDDCKRLRSLSELPSDIKKVRVHGCTSLA--TISD 683 (720)
Q Consensus 621 L---------------~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~lp~~L~~L~l~~c~~L~--~lp~ 683 (720)
| +|+.|++++|.++.+|.. +++|+.|++++| .++.+|..+++|+.|++++|.-.. .+|.
T Consensus 302 L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~lp~~---~~~L~~L~L~~N-~l~~lp~~l~~L~~L~L~~N~l~~l~~ip~ 377 (454)
T 1jl5_A 302 LNASSNEIRSLCDLPPSLEELNVSNNKLIELPAL---PPRLERLIASFN-HLAEVPELPQNLKQLHVEYNPLREFPDIPE 377 (454)
T ss_dssp EECCSSCCSEECCCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSS-CCSCCCCCCTTCCEEECCSSCCSSCCCCCT
T ss_pred EECcCCcCCcccCCcCcCCEEECCCCcccccccc---CCcCCEEECCCC-ccccccchhhhccEEECCCCCCCcCCCChH
Confidence 2 458889999998888864 588999999998 577888877899999999987555 6788
Q ss_pred hccCc-------------hhHhhhhhhcccch---hHHHHHh
Q 047161 684 ALRSC-------------NSATSRIFCINCPK---LILNWLQ 709 (720)
Q Consensus 684 ~~~~~-------------~~L~~l~~~~nc~~---l~~~w~~ 709 (720)
++..+ ++|+.|++.+|... .+|.|+.
T Consensus 378 ~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP~sl~ 419 (454)
T 1jl5_A 378 SVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPESVE 419 (454)
T ss_dssp TCCEEECCC---------------------------------
T ss_pred HHHhhhhcccccccccccCcCCEEECCCCcCCccccchhhHh
Confidence 88777 78999888876443 3555554
No 14
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.89 E-value=7.5e-23 Score=233.75 Aligned_cols=347 Identities=15% Similarity=0.121 Sum_probs=195.7
Q ss_pred HHHHHhhhcCCchhhhhhhcCCCCCCCccccchhhhhHHHHhcC--cchhccCCcceEEEecccc----CCcccCccccc
Q 047161 332 LDVLEISFNGLKGRIEIMRKSPEEPGKCSRLWKVADVSHVLRRN--TAFLKMTNLRLLKIHNLQL----PAGLESLSDEL 405 (720)
Q Consensus 332 l~~L~lSyn~L~~~~~~~~~~p~~~~~l~~Lw~~~~~~~~~~~~--~~~~~l~~L~~L~l~~~~l----~~~~~~l~~~l 405 (720)
++.|++|+|.+.... |..+..+.+|..++...+.+... .+|.++++|+.|++++|.+ +..+..+ ..+
T Consensus 35 l~~L~Ls~n~i~~~~------~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l-~~L 107 (606)
T 3t6q_A 35 TECLEFSFNVLPTIQ------NTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGP-KAL 107 (606)
T ss_dssp CCEEECTTCCCSEEC------TTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSC-TTC
T ss_pred CcEEEccCCccCcCC------hhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhccc-ccc
Confidence 577899999998765 77788888888887777665543 3689999999999999976 3344443 569
Q ss_pred eEEEecCCCCCCC-CCCC-CCCcceEeeCCCCchhHHhhhccCccccCCCCCCCCceeeecCCCCC-------CCCCCCC
Q 047161 406 RLLQWHGYPLKSL-PSSM-EMDKTLECNMCYRRIEQFWKGIKNLIRTPDFTGAPNLEELILDGCKR-------LQNCTSL 476 (720)
Q Consensus 406 ~~L~~~~~~~~~l-p~~~-~~~~l~~L~l~~~~i~~l~~~~~~l~~~~~~~~l~~L~~L~L~~~~~-------l~~~~~L 476 (720)
+.|++++|.+..+ |..+ ...++++|++++|.+..+ ..|.+..+++|++|++++|.- ++.++++
T Consensus 108 ~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~--------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 179 (606)
T 3t6q_A 108 KHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSI--------KLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQA 179 (606)
T ss_dssp CEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCC--------CCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTC
T ss_pred cEeeccccCcccCCcchhccCCcccEEECCCCccccc--------CcccccCCcccCEEEcccCcccccChhhhhhhccc
Confidence 9999999999987 3444 467899999999887643 224555677888888887751 1222222
Q ss_pred c------------ccCccchhh------------hH--------------------------------------------
Q 047161 477 T------------TLPREIATE------------SL-------------------------------------------- 488 (720)
Q Consensus 477 ~------------~lp~~~~~~------------~l-------------------------------------------- 488 (720)
+ .++...+.. .+
T Consensus 180 ~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L 259 (606)
T 3t6q_A 180 TNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESI 259 (606)
T ss_dssp CSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEE
T ss_pred ceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEE
Confidence 2 111111000 00
Q ss_pred -----------HHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCCCcccCcCcCCCCCCCEEeccCcccc
Q 047161 489 -----------QKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMPESLGQMESLEELDVSGTVIR 557 (720)
Q Consensus 489 -----------~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~L~~n~l~ 557 (720)
+..++.+++|++|++++|. +..+|..++++++|++|++++|.+.+..|..+.++++|++|++++|.+.
T Consensus 260 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~ 338 (606)
T 3t6q_A 260 NLQKHYFFNISSNTFHCFSGLQELDLTATH-LSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKR 338 (606)
T ss_dssp ECTTCCCSSCCTTTTTTCTTCSEEECTTSC-CSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSC
T ss_pred EeecCccCccCHHHhccccCCCEEeccCCc-cCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcc
Confidence 1113334444444444444 2344444444444444444444433333444444444444444444444
Q ss_pred c-CCccccCCcCCceEEEeecCCCCCCC--CCcccccccccccccCCCCcccccCCCCCCCCCCCcccccEEECCCCCCc
Q 047161 558 Q-PVPSIFFPSRILKVYLFVDTRDHRTS--SSSWHLWFPFSLMQKGSSDSMALMLPSLSGLCSLTELNLKKLNLRRNNFV 634 (720)
Q Consensus 558 ~-~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~l~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~L~Ls~n~l~ 634 (720)
+ .++..+..+++|+.|++++|.+.... +..+..+..++.+++..+.........+..+++| +.|++++|.+.
T Consensus 339 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-----~~L~l~~n~l~ 413 (606)
T 3t6q_A 339 LELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQL-----ELLDLAFTRLK 413 (606)
T ss_dssp CBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTC-----SEEECTTCCEE
T ss_pred cccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccC-----CeEECCCCcCC
Confidence 2 22222333344555555444444433 3344444555555554444433333334444443 56667777666
Q ss_pred cc-c-ccccCCCCCceeeccccccccccCCc---ccccceEeeecCccccc-c--hhhccCchhHhhhhhhcc
Q 047161 635 SL-R-GTINHLPKFKHLKLDDCKRLRSLSEL---PSDIKKVRVHGCTSLAT-I--SDALRSCNSATSRIFCIN 699 (720)
Q Consensus 635 ~l-p-~~i~~l~~L~~L~L~~c~~L~~lp~l---p~~L~~L~l~~c~~L~~-l--p~~~~~~~~L~~l~~~~n 699 (720)
.. | ..+..+++|+.|++++|..-...|.. .++|++|++++|.--.. + +..+.++++|+.|++.+|
T Consensus 414 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n 486 (606)
T 3t6q_A 414 VKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFC 486 (606)
T ss_dssp CCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTS
T ss_pred CcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCC
Confidence 43 2 33667777777777777432222221 24577777777654331 2 245666777777666644
No 15
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.89 E-value=3.2e-22 Score=221.54 Aligned_cols=288 Identities=18% Similarity=0.210 Sum_probs=171.4
Q ss_pred EEEeccccCCcccCccccceEEEecCCCCCCCCC-CC-CCCcceEeeCCCCchhHHhhhccCccccCCCCCCCCceeeec
Q 047161 387 LKIHNLQLPAGLESLSDELRLLQWHGYPLKSLPS-SM-EMDKTLECNMCYRRIEQFWKGIKNLIRTPDFTGAPNLEELIL 464 (720)
Q Consensus 387 L~l~~~~l~~~~~~l~~~l~~L~~~~~~~~~lp~-~~-~~~~l~~L~l~~~~i~~l~~~~~~l~~~~~~~~l~~L~~L~L 464 (720)
++.+++.+......++..++.|++++|.+..++. .| ...++++|++++|.+..+. +..|.++++|++|+|
T Consensus 16 v~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~--------~~~~~~l~~L~~L~L 87 (477)
T 2id5_A 16 VLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVE--------PGAFNNLFNLRTLGL 87 (477)
T ss_dssp EECCSCCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEEC--------TTTTTTCTTCCEEEC
T ss_pred EEeCCCCcCcCCCCCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeC--------hhhhhCCccCCEEEC
Confidence 3444444332223344556666666666665532 33 2456666666666554331 123566666666666
Q ss_pred CCCCCCCCCCCCcccCccchhhhHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCCCcccCcCcCCCC
Q 047161 465 DGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMPESLGQME 544 (720)
Q Consensus 465 ~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~L~ 544 (720)
++|. +..+|... ++.+++|++|+|++|.+.+..|..+.++++|++|++++|.+.+..|..+..++
T Consensus 88 ~~n~-------l~~~~~~~--------~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 152 (477)
T 2id5_A 88 RSNR-------LKLIPLGV--------FTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLN 152 (477)
T ss_dssp CSSC-------CCSCCTTS--------STTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCT
T ss_pred CCCc-------CCccCccc--------ccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCC
Confidence 6665 44555432 45566666666666665555555666666666666666655555555666666
Q ss_pred CCCEEeccCcccccCCccccCCcCCceEEEeecCCCCCCCCCcccccccccccccCCCCcccccCCCCCCCCCCCcc---
Q 047161 545 SLEELDVSGTVIRQPVPSIFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSLSGLCSLTEL--- 621 (720)
Q Consensus 545 ~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L--- 621 (720)
+|++|++++|.+.+.++..+..+++|+.|++.+|.+..+.+..+..+..++.+++..+.......+......+|+.|
T Consensus 153 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 232 (477)
T 2id5_A 153 SLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSIT 232 (477)
T ss_dssp TCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEE
T ss_pred CCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECc
Confidence 66666666666666665545445666666666666666655556666666655555443333222222111222221
Q ss_pred ----------------cccEEECCCCCCcccc-ccccCCCCCceeeccccccccccC-C-cc--cccceEeeecCccccc
Q 047161 622 ----------------NLKKLNLRRNNFVSLR-GTINHLPKFKHLKLDDCKRLRSLS-E-LP--SDIKKVRVHGCTSLAT 680 (720)
Q Consensus 622 ----------------~L~~L~Ls~n~l~~lp-~~i~~l~~L~~L~L~~c~~L~~lp-~-lp--~~L~~L~l~~c~~L~~ 680 (720)
+|+.|+|++|.++.++ ..+..+++|+.|+|++|. +..++ . +. ++|+.|++++|. ++.
T Consensus 233 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~ 310 (477)
T 2id5_A 233 HCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQ-LAVVEPYAFRGLNYLRVLNVSGNQ-LTT 310 (477)
T ss_dssp SSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSC-CSEECTTTBTTCTTCCEEECCSSC-CSC
T ss_pred CCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCc-cceECHHHhcCcccCCEEECCCCc-Cce
Confidence 2377888888888766 457788888888888884 44442 1 11 569999999974 666
Q ss_pred ch-hhccCchhHhhhhhhcc
Q 047161 681 IS-DALRSCNSATSRIFCIN 699 (720)
Q Consensus 681 lp-~~~~~~~~L~~l~~~~n 699 (720)
+| ..+.++++|+.+.+..|
T Consensus 311 ~~~~~~~~l~~L~~L~l~~N 330 (477)
T 2id5_A 311 LEESVFHSVGNLETLILDSN 330 (477)
T ss_dssp CCGGGBSCGGGCCEEECCSS
T ss_pred eCHhHcCCCcccCEEEccCC
Confidence 66 46788999999888766
No 16
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.88 E-value=6.2e-22 Score=208.25 Aligned_cols=281 Identities=14% Similarity=0.188 Sum_probs=224.7
Q ss_pred CCcceEEEeccccCCcccCccccceEEEecCCCCCCCCC-CC-CCCcceEeeCCCCchhHHhhhccCccccCCCCCCCCc
Q 047161 382 TNLRLLKIHNLQLPAGLESLSDELRLLQWHGYPLKSLPS-SM-EMDKTLECNMCYRRIEQFWKGIKNLIRTPDFTGAPNL 459 (720)
Q Consensus 382 ~~L~~L~l~~~~l~~~~~~l~~~l~~L~~~~~~~~~lp~-~~-~~~~l~~L~l~~~~i~~l~~~~~~l~~~~~~~~l~~L 459 (720)
.+++.++++++.+.......+..++.|++++|.+..++. .+ ...++++|++++|.+..+. +..|..+++|
T Consensus 33 c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~--------~~~~~~l~~L 104 (332)
T 2ft3_A 33 CHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIH--------EKAFSPLRKL 104 (332)
T ss_dssp EETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEEC--------GGGSTTCTTC
T ss_pred ccCCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccC--------HhHhhCcCCC
Confidence 467888888887654334455679999999999988864 44 4678999999998876542 2348889999
Q ss_pred eeeecCCCCCCCCCCCCcccCccchhhhHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCCC--cccC
Q 047161 460 EELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKL--ENMP 537 (720)
Q Consensus 460 ~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~l--~~lp 537 (720)
++|++++|. +..+|.. +. ++|++|++++|.+....+..++++++|++|++++|.+. +..|
T Consensus 105 ~~L~L~~n~-------l~~l~~~---------~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 166 (332)
T 2ft3_A 105 QKLYISKNH-------LVEIPPN---------LP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEP 166 (332)
T ss_dssp CEEECCSSC-------CCSCCSS---------CC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCT
T ss_pred CEEECCCCc-------CCccCcc---------cc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCc
Confidence 999999987 5778876 33 78999999999855444446889999999999999764 3567
Q ss_pred cCcCCCCCCCEEeccCcccccCCccccCCcCCceEEEeecCCCCCCCCCcccccccccccccCCCCcccccCCCCCCCCC
Q 047161 538 ESLGQMESLEELDVSGTVIRQPVPSIFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSLSGLCS 617 (720)
Q Consensus 538 ~~~~~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~l~~l~~ 617 (720)
..+..+ +|++|++++|.+.++|.... ++|+.|++++|.+....+..+..+..++.+++..+.........+..+++
T Consensus 167 ~~~~~l-~L~~L~l~~n~l~~l~~~~~---~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 242 (332)
T 2ft3_A 167 GAFDGL-KLNYLRISEAKLTGIPKDLP---ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPT 242 (332)
T ss_dssp TSSCSC-CCSCCBCCSSBCSSCCSSSC---SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTT
T ss_pred ccccCC-ccCEEECcCCCCCccCcccc---CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCC
Confidence 778888 99999999999999877654 78999999999999999899999999999999988777655556777777
Q ss_pred CCcccccEEECCCCCCccccccccCCCCCceeeccccccccccCC-----c-----ccccceEeeecCccc--ccchhhc
Q 047161 618 LTELNLKKLNLRRNNFVSLRGTINHLPKFKHLKLDDCKRLRSLSE-----L-----PSDIKKVRVHGCTSL--ATISDAL 685 (720)
Q Consensus 618 L~~L~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~-----l-----p~~L~~L~l~~c~~L--~~lp~~~ 685 (720)
| +.|++++|.++.+|.++..+++|+.|++++|+ ++.+|. . .++|+.|++.+++.. ...|..+
T Consensus 243 L-----~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~ 316 (332)
T 2ft3_A 243 L-----RELHLDNNKLSRVPAGLPDLKLLQVVYLHTNN-ITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATF 316 (332)
T ss_dssp C-----CEEECCSSCCCBCCTTGGGCTTCCEEECCSSC-CCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGG
T ss_pred C-----CEEECCCCcCeecChhhhcCccCCEEECCCCC-CCccChhHccccccccccccccceEeecCcccccccCcccc
Confidence 6 78899999999999999999999999999994 666542 1 256899999998855 4556788
Q ss_pred cCchhHhhhhhhc
Q 047161 686 RSCNSATSRIFCI 698 (720)
Q Consensus 686 ~~~~~L~~l~~~~ 698 (720)
.++++|+.+.+..
T Consensus 317 ~~l~~L~~l~l~~ 329 (332)
T 2ft3_A 317 RCVTDRLAIQFGN 329 (332)
T ss_dssp TTBCCSTTEEC--
T ss_pred cccchhhhhhccc
Confidence 8899998866653
No 17
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.88 E-value=9.7e-22 Score=206.59 Aligned_cols=283 Identities=15% Similarity=0.167 Sum_probs=227.5
Q ss_pred cCCcceEEEeccccCCcccCccccceEEEecCCCCCCCCC-CC-CCCcceEeeCCCCchhHHhhhccCccccCCCCCCCC
Q 047161 381 MTNLRLLKIHNLQLPAGLESLSDELRLLQWHGYPLKSLPS-SM-EMDKTLECNMCYRRIEQFWKGIKNLIRTPDFTGAPN 458 (720)
Q Consensus 381 l~~L~~L~l~~~~l~~~~~~l~~~l~~L~~~~~~~~~lp~-~~-~~~~l~~L~l~~~~i~~l~~~~~~l~~~~~~~~l~~ 458 (720)
..+++.++++++.+..-...++..++.|++++|.+..+|. .+ ...++++|++++|.+..+. +..|..+++
T Consensus 30 ~c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~--------~~~~~~l~~ 101 (330)
T 1xku_A 30 QCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKIS--------PGAFAPLVK 101 (330)
T ss_dssp EEETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBC--------TTTTTTCTT
T ss_pred cCCCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeC--------HHHhcCCCC
Confidence 3467888888877654444556789999999999998876 34 4678999999998876431 234889999
Q ss_pred ceeeecCCCCCCCCCCCCcccCccchhhhHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCCCc--cc
Q 047161 459 LEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLE--NM 536 (720)
Q Consensus 459 L~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~l~--~l 536 (720)
|++|++++|. +..+|.. +. ++|++|++++|.+.+..+..++++++|++|++++|.+.. ..
T Consensus 102 L~~L~Ls~n~-------l~~l~~~---------~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 163 (330)
T 1xku_A 102 LERLYLSKNQ-------LKELPEK---------MP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIE 163 (330)
T ss_dssp CCEEECCSSC-------CSBCCSS---------CC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBC
T ss_pred CCEEECCCCc-------CCccChh---------hc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcC
Confidence 9999999987 5778876 32 789999999999666555668899999999999997643 56
Q ss_pred CcCcCCCCCCCEEeccCcccccCCccccCCcCCceEEEeecCCCCCCCCCcccccccccccccCCCCcccccCCCCCCCC
Q 047161 537 PESLGQMESLEELDVSGTVIRQPVPSIFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSLSGLC 616 (720)
Q Consensus 537 p~~~~~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~l~~l~ 616 (720)
|..+.++++|++|++++|.+..+|.... ++|+.|++++|.+....+..+..+..++.++++.+.........+..++
T Consensus 164 ~~~~~~l~~L~~L~l~~n~l~~l~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 240 (330)
T 1xku_A 164 NGAFQGMKKLSYIRIADTNITTIPQGLP---PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTP 240 (330)
T ss_dssp TTGGGGCTTCCEEECCSSCCCSCCSSCC---TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGST
T ss_pred hhhccCCCCcCEEECCCCccccCCcccc---ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCC
Confidence 7788999999999999999998877654 7899999999999998888999999999999998887766555677777
Q ss_pred CCCcccccEEECCCCCCccccccccCCCCCceeeccccccccccCC--c--------ccccceEeeecCccc--ccchhh
Q 047161 617 SLTELNLKKLNLRRNNFVSLRGTINHLPKFKHLKLDDCKRLRSLSE--L--------PSDIKKVRVHGCTSL--ATISDA 684 (720)
Q Consensus 617 ~L~~L~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~--l--------p~~L~~L~l~~c~~L--~~lp~~ 684 (720)
+| +.|++++|.++.+|.++..+++|++|++++|+ ++.+|. + .++|+.|++.+++.. ...|..
T Consensus 241 ~L-----~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~-i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~ 314 (330)
T 1xku_A 241 HL-----RELHLNNNKLVKVPGGLADHKYIQVVYLHNNN-ISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPST 314 (330)
T ss_dssp TC-----CEEECCSSCCSSCCTTTTTCSSCCEEECCSSC-CCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGG
T ss_pred CC-----CEEECCCCcCccCChhhccCCCcCEEECCCCc-CCccChhhcCCcccccccccccceEeecCcccccccCccc
Confidence 76 78899999999999999999999999999994 666652 1 256889999988743 244577
Q ss_pred ccCchhHhhhhhhc
Q 047161 685 LRSCNSATSRIFCI 698 (720)
Q Consensus 685 ~~~~~~L~~l~~~~ 698 (720)
+.++.+++.+++..
T Consensus 315 f~~~~~l~~l~L~~ 328 (330)
T 1xku_A 315 FRCVYVRAAVQLGN 328 (330)
T ss_dssp GTTCCCGGGEEC--
T ss_pred cccccceeEEEecc
Confidence 88888888866654
No 18
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.88 E-value=7.4e-23 Score=233.78 Aligned_cols=212 Identities=16% Similarity=0.173 Sum_probs=164.2
Q ss_pred hccCCCCcEEeccCCCCCcc--cCCCCCCCCCCCEEeccCCCCCcccCcCcCCCCCCCEEeccCcccccCCc-cccCCcC
Q 047161 492 IELLTGLVFLNLNDCKILVR--LPSTINGWKSLRTVNLSRCSKLENMPESLGQMESLEELDVSGTVIRQPVP-SIFFPSR 568 (720)
Q Consensus 492 i~~l~~L~~L~Ls~n~~~~~--lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~L~~n~l~~~~~-~~~~~~~ 568 (720)
++.+++|++|++++|.+.+. .|..++.+++|++|++++|. +..+|..+..+++|++|++++|.+.+.++ ..+..++
T Consensus 346 ~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~ 424 (606)
T 3vq2_A 346 KVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNG-AIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLE 424 (606)
T ss_dssp CCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCS-EEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCT
T ss_pred hccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCc-cccchhhccCCCCCCeeECCCCccCCccChhhhhccc
Confidence 55678888888888875443 36777888888888888875 55577888889999999999998888776 5555568
Q ss_pred CceEEEeecCCCCCCCCCcccccccccccccCCCCcccc-cCCCCCCCCCCCcccccEEECCCCCCccc-cccccCCCCC
Q 047161 569 ILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMAL-MLPSLSGLCSLTELNLKKLNLRRNNFVSL-RGTINHLPKF 646 (720)
Q Consensus 569 ~L~~L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~-~~~~l~~l~~L~~L~L~~L~Ls~n~l~~l-p~~i~~l~~L 646 (720)
+|+.|++++|.+....+..+..+..++.+++..+...+. ....++.+++| +.|++++|.++.+ |.++.++++|
T Consensus 425 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L-----~~L~Ls~n~l~~~~~~~~~~l~~L 499 (606)
T 3vq2_A 425 KLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNL-----TFLDLSKCQLEQISWGVFDTLHRL 499 (606)
T ss_dssp TCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTC-----CEEECTTSCCCEECTTTTTTCTTC
T ss_pred cCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCC-----CEEECCCCcCCccChhhhcccccC
Confidence 999999999988888888888889999999988877664 34447778776 7889999999876 5778999999
Q ss_pred ceeeccccccccccCC-cc--cccceEeeecCcccccchhhccCch-hHhhhhhhcc-----cch-hHHHHHhh
Q 047161 647 KHLKLDDCKRLRSLSE-LP--SDIKKVRVHGCTSLATISDALRSCN-SATSRIFCIN-----CPK-LILNWLQQ 710 (720)
Q Consensus 647 ~~L~L~~c~~L~~lp~-lp--~~L~~L~l~~c~~L~~lp~~~~~~~-~L~~l~~~~n-----c~~-l~~~w~~~ 710 (720)
++|++++|+.....|. +. ++|+.|++++|. ++.+|..+..++ +|+.+++..| |+. ....|+++
T Consensus 500 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~p~~~~~l~~~L~~l~l~~N~~~c~c~~~~~~~~l~~ 572 (606)
T 3vq2_A 500 QLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNR-IETSKGILQHFPKSLAFFNLTNNSVACICEHQKFLQWVKE 572 (606)
T ss_dssp CEEECCSSCCSCEEGGGTTTCTTCCEEECTTSC-CCCEESCGGGSCTTCCEEECCSCCCCCSSTTHHHHTTTTT
T ss_pred CEEECCCCcCCCcCHHHccCCCcCCEEECCCCc-CcccCHhHhhhcccCcEEEccCCCcccCCccHHHHHHHHc
Confidence 9999999953333232 22 569999999986 789998888887 5888887765 442 23567654
No 19
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.88 E-value=1.2e-22 Score=227.58 Aligned_cols=347 Identities=15% Similarity=0.174 Sum_probs=224.0
Q ss_pred HHHhhhcCCchhhhhhhcCCCCCCCccccchhhhhHHHHhcC--cchhccCCcceEEEeccccC----CcccCccccceE
Q 047161 334 VLEISFNGLKGRIEIMRKSPEEPGKCSRLWKVADVSHVLRRN--TAFLKMTNLRLLKIHNLQLP----AGLESLSDELRL 407 (720)
Q Consensus 334 ~L~lSyn~L~~~~~~~~~~p~~~~~l~~Lw~~~~~~~~~~~~--~~~~~l~~L~~L~l~~~~l~----~~~~~l~~~l~~ 407 (720)
.|++|+|+|... |..+. .++..++...+.+.+. ..|.++++|++|++++|.+. ..+..+ ..+++
T Consensus 4 ~l~ls~n~l~~i-------p~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~ 73 (520)
T 2z7x_B 4 LVDRSKNGLIHV-------PKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFN-QELEY 73 (520)
T ss_dssp EEECTTSCCSSC-------CCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTC-TTCCE
T ss_pred eEecCCCCcccc-------ccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcc-cCCCE
Confidence 356777777643 44333 3344444444444443 26788888888888888763 334443 45888
Q ss_pred EEecCCCCCCCCCCCCCCcceEeeCCCCchhHHhhhccCccccCCCCCCCCceeeecCCCCC----CCCCCCC--cc---
Q 047161 408 LQWHGYPLKSLPSSMEMDKTLECNMCYRRIEQFWKGIKNLIRTPDFTGAPNLEELILDGCKR----LQNCTSL--TT--- 478 (720)
Q Consensus 408 L~~~~~~~~~lp~~~~~~~l~~L~l~~~~i~~l~~~~~~l~~~~~~~~l~~L~~L~L~~~~~----l~~~~~L--~~--- 478 (720)
|++++|.+..+|.. ...++++|++++|.+..+. .+..|+.+++|++|++++|.- +..++++ +.
T Consensus 74 L~Ls~N~l~~lp~~-~l~~L~~L~L~~N~l~~~~-------~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~l 145 (520)
T 2z7x_B 74 LDLSHNKLVKISCH-PTVNLKHLDLSFNAFDALP-------ICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLL 145 (520)
T ss_dssp EECCSSCCCEEECC-CCCCCSEEECCSSCCSSCC-------CCGGGGGCTTCCEEEEEESSCCGGGGGGGTTSCEEEEEE
T ss_pred EecCCCceeecCcc-ccCCccEEeccCCcccccc-------chhhhccCCcceEEEecCcccchhhccccccceeeEEEe
Confidence 88888888888877 7788888888888765421 012356666666666666641 1112222 11
Q ss_pred ----------cCccc------------------------------------------------hhhhHHHHhcc------
Q 047161 479 ----------LPREI------------------------------------------------ATESLQKLIEL------ 494 (720)
Q Consensus 479 ----------lp~~~------------------------------------------------~~~~l~~~i~~------ 494 (720)
.|..+ ..+.+| .++.
T Consensus 146 ~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~ 224 (520)
T 2z7x_B 146 VLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSN 224 (520)
T ss_dssp EECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCE
T ss_pred ecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhh
Confidence 12111 011111 1222
Q ss_pred ---------------------CCCCcEEeccCCCCCcccCCCC-----CCCCCCCEEeccCCCCCcccCc-C--------
Q 047161 495 ---------------------LTGLVFLNLNDCKILVRLPSTI-----NGWKSLRTVNLSRCSKLENMPE-S-------- 539 (720)
Q Consensus 495 ---------------------l~~L~~L~Ls~n~~~~~lp~~i-----~~l~~L~~L~L~~~~~l~~lp~-~-------- 539 (720)
.++|++|++++|.+.+.+|..+ +++++|+.+++++|.. .+|. .
T Consensus 225 L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~ 302 (520)
T 2z7x_B 225 LTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNM 302 (520)
T ss_dssp EEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTC
T ss_pred ccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccC
Confidence 2367777777777666888887 7777777777666654 3441 0
Q ss_pred -----------------cCCCCCCCEEeccCcccccCCccccCCcCCceEEEeecCCCCCCC--CCcccccccccccccC
Q 047161 540 -----------------LGQMESLEELDVSGTVIRQPVPSIFFPSRILKVYLFVDTRDHRTS--SSSWHLWFPFSLMQKG 600 (720)
Q Consensus 540 -----------------~~~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~l~~l~~l~l~ 600 (720)
...+++|++|++++|.+.+..+..+..+++|+.|++++|.+..+. +..+..+..++.++++
T Consensus 303 ~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls 382 (520)
T 2z7x_B 303 NIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDIS 382 (520)
T ss_dssp CCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECC
T ss_pred ceeEEEcCCCccccccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECC
Confidence 157788888888888888865555555588888888888877643 3557778888888888
Q ss_pred CCCccc-ccCCCCCCCCCCCcccccEEECCCCCCc-cccccccCCCCCceeeccccccccccCCc---ccccceEeeecC
Q 047161 601 SSDSMA-LMLPSLSGLCSLTELNLKKLNLRRNNFV-SLRGTINHLPKFKHLKLDDCKRLRSLSEL---PSDIKKVRVHGC 675 (720)
Q Consensus 601 ~~~~~~-~~~~~l~~l~~L~~L~L~~L~Ls~n~l~-~lp~~i~~l~~L~~L~L~~c~~L~~lp~l---p~~L~~L~l~~c 675 (720)
.+.... .....+..+++| +.|++++|.++ .+|..+. ++|+.|++++| .++.+|.- .++|+.|++++|
T Consensus 383 ~N~l~~~l~~~~~~~l~~L-----~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~L~~N 454 (520)
T 2z7x_B 383 QNSVSYDEKKGDCSWTKSL-----LSLNMSSNILTDTIFRCLP--PRIKVLDLHSN-KIKSIPKQVVKLEALQELNVASN 454 (520)
T ss_dssp SSCCBCCGGGCSCCCCTTC-----CEEECCSSCCCGGGGGSCC--TTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSS
T ss_pred CCcCCcccccchhccCccC-----CEEECcCCCCCcchhhhhc--ccCCEEECCCC-cccccchhhhcCCCCCEEECCCC
Confidence 877665 333336666665 67888888885 4555443 68999999998 46666642 157999999997
Q ss_pred cccccchhh-ccCchhHhhhhhhcc---cch---hH-HHHHhh
Q 047161 676 TSLATISDA-LRSCNSATSRIFCIN---CPK---LI-LNWLQQ 710 (720)
Q Consensus 676 ~~L~~lp~~-~~~~~~L~~l~~~~n---c~~---l~-~~w~~~ 710 (720)
.++.+|.. +.++++|+.+++..| |.. .. ..|+.+
T Consensus 455 -~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~~~~~~~~ 496 (520)
T 2z7x_B 455 -QLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNK 496 (520)
T ss_dssp -CCCCCCTTTTTTCTTCCEEECCSSCBCCCHHHHHHHHHHHHH
T ss_pred -cCCccCHHHhccCCcccEEECcCCCCcccCCchHHHHHHHHh
Confidence 47788876 888999999887766 332 22 667765
No 20
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.88 E-value=1.6e-21 Score=214.55 Aligned_cols=298 Identities=20% Similarity=0.308 Sum_probs=194.5
Q ss_pred CCcceEEEeccccC----CcccCccccceEEEecCCCCC-CCC-CCC-CCCcceEeeCCCCchhHHhhhccCccccCCCC
Q 047161 382 TNLRLLKIHNLQLP----AGLESLSDELRLLQWHGYPLK-SLP-SSM-EMDKTLECNMCYRRIEQFWKGIKNLIRTPDFT 454 (720)
Q Consensus 382 ~~L~~L~l~~~~l~----~~~~~l~~~l~~L~~~~~~~~-~lp-~~~-~~~~l~~L~l~~~~i~~l~~~~~~l~~~~~~~ 454 (720)
.++++|++++|.+. ..+..+ ..++.|++++|.+. .+| ..+ ...++++|++++|.+..+. +..|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l-~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~--------~~~~~ 100 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRL-QDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLE--------TGAFN 100 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSC-TTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEEC--------TTTTT
T ss_pred CccCEEEecCCccCcCChhHhccC-ccccEEECcCCcccceECcccccccccCCEEeCCCCccCccC--------hhhcc
Confidence 45677777776552 233333 34677777776654 443 233 3466677777766654331 22366
Q ss_pred CCCCceeeecCCCCCCCCCCCCcccCccchhhhHHHH--hccCCCCcEEeccCCCCCcccCCC-CCCCCCCCEEeccCCC
Q 047161 455 GAPNLEELILDGCKRLQNCTSLTTLPREIATESLQKL--IELLTGLVFLNLNDCKILVRLPST-INGWKSLRTVNLSRCS 531 (720)
Q Consensus 455 ~l~~L~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~--i~~l~~L~~L~Ls~n~~~~~lp~~-i~~l~~L~~L~L~~~~ 531 (720)
++++|++|+|++|. +.. ..+.. ++.+++|++|+|++|.+.+..|.. ++++++|++|++++|.
T Consensus 101 ~l~~L~~L~L~~n~-------l~~--------~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~ 165 (455)
T 3v47_A 101 GLANLEVLTLTQCN-------LDG--------AVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNK 165 (455)
T ss_dssp TCTTCCEEECTTSC-------CBT--------HHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCC
T ss_pred CcccCCEEeCCCCC-------CCc--------cccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCc
Confidence 67777777777765 221 11111 667888888888888866655665 6788888888888887
Q ss_pred CCcccCcCcCCC----------------------------------CCCCEEeccCcccccCCccccC------------
Q 047161 532 KLENMPESLGQM----------------------------------ESLEELDVSGTVIRQPVPSIFF------------ 565 (720)
Q Consensus 532 ~l~~lp~~~~~L----------------------------------~~L~~L~L~~n~l~~~~~~~~~------------ 565 (720)
+.+..|..+..+ ++|++|++++|.+.+..+..+.
T Consensus 166 l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~ 245 (455)
T 3v47_A 166 VKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLI 245 (455)
T ss_dssp BSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEE
T ss_pred ccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEe
Confidence 666555555433 4566666666655432211100
Q ss_pred ---------------------------CcCCceEEEeecCCCCCCCCCcccccccccccccCCCCcccccCCCCCCCCCC
Q 047161 566 ---------------------------PSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSLSGLCSL 618 (720)
Q Consensus 566 ---------------------------~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~l~~l~~L 618 (720)
..++|+.|++++|.+....+..+..+..++.+++..+.........+.++++|
T Consensus 246 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 325 (455)
T 3v47_A 246 LSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHL 325 (455)
T ss_dssp CTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred eccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccC
Confidence 01356666666666666666677777778888887777666555567777766
Q ss_pred CcccccEEECCCCCCccc-cccccCCCCCceeecccccccccc-CC-cc--cccceEeeecCcccccchh-hccCchhHh
Q 047161 619 TELNLKKLNLRRNNFVSL-RGTINHLPKFKHLKLDDCKRLRSL-SE-LP--SDIKKVRVHGCTSLATISD-ALRSCNSAT 692 (720)
Q Consensus 619 ~~L~L~~L~Ls~n~l~~l-p~~i~~l~~L~~L~L~~c~~L~~l-p~-lp--~~L~~L~l~~c~~L~~lp~-~~~~~~~L~ 692 (720)
+.|++++|.++.+ |..+.++++|+.|+|++|. +..+ |. +. ++|++|++++|. ++.+|. .+..+++|+
T Consensus 326 -----~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~ 398 (455)
T 3v47_A 326 -----LKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNH-IRALGDQSFLGLPNLKELALDTNQ-LKSVPDGIFDRLTSLQ 398 (455)
T ss_dssp -----CEEECCSSCCCEECGGGGTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCC
T ss_pred -----CEEECCCCccCCcChhHhcCcccCCEEECCCCc-ccccChhhccccccccEEECCCCc-cccCCHhHhccCCccc
Confidence 7889999999977 5778999999999999995 4444 32 21 679999999975 666764 568899999
Q ss_pred hhhhhcc-----cchh--HHHHHhh
Q 047161 693 SRIFCIN-----CPKL--ILNWLQQ 710 (720)
Q Consensus 693 ~l~~~~n-----c~~l--~~~w~~~ 710 (720)
.+.+.+| ||.+ +..|+.+
T Consensus 399 ~L~l~~N~l~~~~~~~~~l~~~l~~ 423 (455)
T 3v47_A 399 KIWLHTNPWDCSCPRIDYLSRWLNK 423 (455)
T ss_dssp EEECCSSCBCCCTTTTHHHHHHHHH
T ss_pred EEEccCCCcccCCCcchHHHHHHHh
Confidence 9888776 7743 5678874
No 21
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.88 E-value=1.5e-21 Score=206.56 Aligned_cols=278 Identities=17% Similarity=0.191 Sum_probs=156.9
Q ss_pred chhccCCcceEEEeccccCCcc-cCccccceEEEecCCCCCCCCCCCCCCcceEeeCCCCchhHHhhhccCccccCCCCC
Q 047161 377 AFLKMTNLRLLKIHNLQLPAGL-ESLSDELRLLQWHGYPLKSLPSSMEMDKTLECNMCYRRIEQFWKGIKNLIRTPDFTG 455 (720)
Q Consensus 377 ~~~~l~~L~~L~l~~~~l~~~~-~~l~~~l~~L~~~~~~~~~lp~~~~~~~l~~L~l~~~~i~~l~~~~~~l~~~~~~~~ 455 (720)
.+..+++|+.|++++|.+.... ......++.|++++|.+..+|......++++|+++++.+..+ +.+..
T Consensus 61 ~~~~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~l~~n~i~~~----------~~~~~ 130 (347)
T 4fmz_A 61 GIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNEDNISDI----------SPLAN 130 (347)
T ss_dssp TGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEECTTSCCCCC----------GGGTT
T ss_pred hhhhcCCccEEEccCCccccchhhhcCCcCCEEEccCCcccCchHHcCCCcCCEEECcCCcccCc----------hhhcc
Confidence 4555666666666665542211 111234666666666666555433455566666655554322 22555
Q ss_pred CCCceeeecCCCCCCCCCCCCcccCccchhhhHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCCCcc
Q 047161 456 APNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLEN 535 (720)
Q Consensus 456 l~~L~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~l~~ 535 (720)
+++|++|++++|..+ ..++. +..+++|++|++++|.+. .++. ++.+++|++|++++|.+. .
T Consensus 131 l~~L~~L~l~~n~~~------~~~~~----------~~~l~~L~~L~l~~~~~~-~~~~-~~~l~~L~~L~l~~n~l~-~ 191 (347)
T 4fmz_A 131 LTKMYSLNLGANHNL------SDLSP----------LSNMTGLNYLTVTESKVK-DVTP-IANLTDLYSLSLNYNQIE-D 191 (347)
T ss_dssp CTTCCEEECTTCTTC------CCCGG----------GTTCTTCCEEECCSSCCC-CCGG-GGGCTTCSEEECTTSCCC-C
T ss_pred CCceeEEECCCCCCc------ccccc----------hhhCCCCcEEEecCCCcC-Cchh-hccCCCCCEEEccCCccc-c
Confidence 666666666666422 22211 556667777777776633 3333 666677777777776433 3
Q ss_pred cCcCcCCCCCCCEEeccCcccccCCccccCCcCCceEEEeecCCCCCCCCCcccccccccccccCCCCcccccCCCCCCC
Q 047161 536 MPESLGQMESLEELDVSGTVIRQPVPSIFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSLSGL 615 (720)
Q Consensus 536 lp~~~~~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~l~~l 615 (720)
++. +..+++|+.|++++|.+.+.++ +..+++|+.|++++|.+....+ +..+..++.+++..+..... +.+..+
T Consensus 192 ~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l 264 (347)
T 4fmz_A 192 ISP-LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDL 264 (347)
T ss_dssp CGG-GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTC
T ss_pred ccc-ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hhHhcC
Confidence 333 6666777777777776666554 2333677777777776666544 56666666666666554432 335555
Q ss_pred CCCCcccccEEECCCCCCccccccccCCCCCceeeccccccccccC----CcccccceEeeecCcccccchhhccCchhH
Q 047161 616 CSLTELNLKKLNLRRNNFVSLRGTINHLPKFKHLKLDDCKRLRSLS----ELPSDIKKVRVHGCTSLATISDALRSCNSA 691 (720)
Q Consensus 616 ~~L~~L~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp----~lp~~L~~L~l~~c~~L~~lp~~~~~~~~L 691 (720)
++| +.|++++|.++.+| .+..+++|+.|++++|+.-...| .+ ++|+.|++++|+ +..++. +..+++|
T Consensus 265 ~~L-----~~L~l~~n~l~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l-~~L~~L~L~~n~-l~~~~~-~~~l~~L 335 (347)
T 4fmz_A 265 TKL-----KMLNVGSNQISDIS-VLNNLSQLNSLFLNNNQLGNEDMEVIGGL-TNLTTLFLSQNH-ITDIRP-LASLSKM 335 (347)
T ss_dssp TTC-----CEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCGGGHHHHHTC-TTCSEEECCSSS-CCCCGG-GGGCTTC
T ss_pred CCc-----CEEEccCCccCCCh-hhcCCCCCCEEECcCCcCCCcChhHhhcc-ccCCEEEccCCc-cccccC-hhhhhcc
Confidence 544 56667777776664 46667777777777774221111 12 457777777766 444443 5666677
Q ss_pred hhhhhhcc
Q 047161 692 TSRIFCIN 699 (720)
Q Consensus 692 ~~l~~~~n 699 (720)
+.+++.+|
T Consensus 336 ~~L~l~~N 343 (347)
T 4fmz_A 336 DSADFANQ 343 (347)
T ss_dssp SEESSSCC
T ss_pred ceeehhhh
Confidence 66555533
No 22
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.87 E-value=3.1e-22 Score=221.66 Aligned_cols=289 Identities=18% Similarity=0.196 Sum_probs=161.3
Q ss_pred HHHHhhhcCCchhhhhhhcCCCCCCCccccchhhhhHHHHhcC--cchhccCCcceEEEeccccCC---cccCccccceE
Q 047161 333 DVLEISFNGLKGRIEIMRKSPEEPGKCSRLWKVADVSHVLRRN--TAFLKMTNLRLLKIHNLQLPA---GLESLSDELRL 407 (720)
Q Consensus 333 ~~L~lSyn~L~~~~~~~~~~p~~~~~l~~Lw~~~~~~~~~~~~--~~~~~l~~L~~L~l~~~~l~~---~~~~l~~~l~~ 407 (720)
+.|++++|.+.... |..+..+.+|..++...+.+... .+|.++++|+.|++++|.+.. ....-...++.
T Consensus 35 ~~L~L~~n~l~~~~------~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 108 (477)
T 2id5_A 35 RLLDLGKNRIKTLN------QDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTK 108 (477)
T ss_dssp SEEECCSSCCCEEC------TTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCE
T ss_pred cEEECCCCccceEC------HhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCE
Confidence 45566666665443 33444444444444333333221 244555555555555554421 11111233555
Q ss_pred EEecCCCCCCCCC-CC-CCCcceEeeCCCCchhHHhhhccCccccCCCCCCCCceeeecCCCCCCCCCCCCcccCccchh
Q 047161 408 LQWHGYPLKSLPS-SM-EMDKTLECNMCYRRIEQFWKGIKNLIRTPDFTGAPNLEELILDGCKRLQNCTSLTTLPREIAT 485 (720)
Q Consensus 408 L~~~~~~~~~lp~-~~-~~~~l~~L~l~~~~i~~l~~~~~~l~~~~~~~~l~~L~~L~L~~~~~l~~~~~L~~lp~~~~~ 485 (720)
|++++|.+..++. .+ ...++..|++.+|.+..+. ...|..+++|+.|+|++|. +..++..
T Consensus 109 L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~--------~~~~~~l~~L~~L~l~~n~-------l~~~~~~--- 170 (477)
T 2id5_A 109 LDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYIS--------HRAFSGLNSLEQLTLEKCN-------LTSIPTE--- 170 (477)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEEC--------TTSSTTCTTCCEEEEESCC-------CSSCCHH---
T ss_pred EECCCCccccCChhHccccccCCEEECCCCccceeC--------hhhccCCCCCCEEECCCCc-------CcccChh---
Confidence 5555555544322 22 2344555555544443221 1134555555555555554 3333332
Q ss_pred hhHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCCCcccCcCcCCCCCCCEEeccCcccccCCccccC
Q 047161 486 ESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMPESLGQMESLEELDVSGTVIRQPVPSIFF 565 (720)
Q Consensus 486 ~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~L~~n~l~~~~~~~~~ 565 (720)
.+..+++|+.|++++|.+.+..+..+.++++|++|++++|...+.+|..+....+|++|++++|.+.+.++..+.
T Consensus 171 -----~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 245 (477)
T 2id5_A 171 -----ALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVR 245 (477)
T ss_dssp -----HHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHT
T ss_pred -----HhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhc
Confidence 256667777777777765555555666777777777777766666666665666777777777777766655555
Q ss_pred CcCCceEEEeecCCCCCCCCCcccccccccccccCCCCcccccCCCCCCCCCCCcccccEEECCCCCCccccc-cccCCC
Q 047161 566 PSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSLSGLCSLTELNLKKLNLRRNNFVSLRG-TINHLP 644 (720)
Q Consensus 566 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~L~Ls~n~l~~lp~-~i~~l~ 644 (720)
.+++|+.|++++|.+..+.+..+..+..|+.+.+..+.........+.++++| +.|+|++|.++.+|. .+..++
T Consensus 246 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L-----~~L~L~~N~l~~~~~~~~~~l~ 320 (477)
T 2id5_A 246 HLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYL-----RVLNVSGNQLTTLEESVFHSVG 320 (477)
T ss_dssp TCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTC-----CEEECCSSCCSCCCGGGBSCGG
T ss_pred CccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccC-----CEEECCCCcCceeCHhHcCCCc
Confidence 55677777777777666666666666677777766666655555556666655 566667777666653 446666
Q ss_pred CCceeeccccc
Q 047161 645 KFKHLKLDDCK 655 (720)
Q Consensus 645 ~L~~L~L~~c~ 655 (720)
+|+.|+|++|+
T Consensus 321 ~L~~L~l~~N~ 331 (477)
T 2id5_A 321 NLETLILDSNP 331 (477)
T ss_dssp GCCEEECCSSC
T ss_pred ccCEEEccCCC
Confidence 77777776664
No 23
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.87 E-value=2.3e-22 Score=227.98 Aligned_cols=164 Identities=20% Similarity=0.290 Sum_probs=106.6
Q ss_pred CcCCCCCCCEEeccCcccccCCccccCCcCCceEEEeecCCCCCCCC-CcccccccccccccCCCCcccccCCCCCCCCC
Q 047161 539 SLGQMESLEELDVSGTVIRQPVPSIFFPSRILKVYLFVDTRDHRTSS-SSWHLWFPFSLMQKGSSDSMALMLPSLSGLCS 617 (720)
Q Consensus 539 ~~~~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~l~~l~l~~~~~~~~~~~~l~~l~~ 617 (720)
.+..+++|++|++++|.+.+.++. +..+++|+.|++.+|.+....+ ..+..+..++.+++..+.........+.++++
T Consensus 368 ~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 446 (570)
T 2z63_A 368 SDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS 446 (570)
T ss_dssp HHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTT
T ss_pred cccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCc
Confidence 344444555555555555444444 2223555555555555554433 34555666666666665554444444555555
Q ss_pred CCcccccEEECCCCCCc--cccccccCCCCCceeecccccccccc-CC-cc--cccceEeeecCcccccch-hhccCchh
Q 047161 618 LTELNLKKLNLRRNNFV--SLRGTINHLPKFKHLKLDDCKRLRSL-SE-LP--SDIKKVRVHGCTSLATIS-DALRSCNS 690 (720)
Q Consensus 618 L~~L~L~~L~Ls~n~l~--~lp~~i~~l~~L~~L~L~~c~~L~~l-p~-lp--~~L~~L~l~~c~~L~~lp-~~~~~~~~ 690 (720)
| +.|++++|.+. .+|..+..+++|+.|++++|. +..+ |. +. ++|+.|++++|. +..+| ..+.++++
T Consensus 447 L-----~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~ 519 (570)
T 2z63_A 447 L-----EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ-LEQLSPTAFNSLSSLQVLNMASNQ-LKSVPDGIFDRLTS 519 (570)
T ss_dssp C-----CEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTT
T ss_pred C-----cEEECcCCcCccccchhhhhcccCCCEEECCCCc-cccCChhhhhcccCCCEEeCCCCc-CCCCCHHHhhcccC
Confidence 5 78899999886 588899999999999999995 4444 42 22 579999999985 55554 67889999
Q ss_pred Hhhhhhhcc-----cchh--HHHHHhh
Q 047161 691 ATSRIFCIN-----CPKL--ILNWLQQ 710 (720)
Q Consensus 691 L~~l~~~~n-----c~~l--~~~w~~~ 710 (720)
|+.+.+..| ||.. .+.|+..
T Consensus 520 L~~L~l~~N~~~~~~~~~~~~~~wl~~ 546 (570)
T 2z63_A 520 LQKIWLHTNPWDCSCPRIDYLSRWLNK 546 (570)
T ss_dssp CCEEECCSSCBCCCTTTTHHHHHHHHH
T ss_pred CcEEEecCCcccCCCcchHHHHHHHHh
Confidence 999888776 6654 3488875
No 24
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.87 E-value=1.7e-22 Score=230.77 Aligned_cols=220 Identities=16% Similarity=0.130 Sum_probs=169.7
Q ss_pred CCCCceeeecCCCCC-----CCCCCCCcccCc--cchhh--hHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEE
Q 047161 455 GAPNLEELILDGCKR-----LQNCTSLTTLPR--EIATE--SLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTV 525 (720)
Q Consensus 455 ~l~~L~~L~L~~~~~-----l~~~~~L~~lp~--~~~~~--~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L 525 (720)
.+++|+.|++++|.. +..+++|+.+.- +...+ ..|..+..+++|++|++++|. +..+|..++.+++|++|
T Consensus 326 ~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L 404 (606)
T 3vq2_A 326 DLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNG-AIIMSANFMGLEELQHL 404 (606)
T ss_dssp CCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCS-EEEECCCCTTCTTCCEE
T ss_pred CCCccceeeccCCcCccchhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCc-cccchhhccCCCCCCee
Confidence 555555566555531 223444444321 11111 124558889999999999998 56688899999999999
Q ss_pred eccCCCCCcccC-cCcCCCCCCCEEeccCcccccCCccccCCcCCceEEEeecCCCCC-CCCCcccccccccccccCCCC
Q 047161 526 NLSRCSKLENMP-ESLGQMESLEELDVSGTVIRQPVPSIFFPSRILKVYLFVDTRDHR-TSSSSWHLWFPFSLMQKGSSD 603 (720)
Q Consensus 526 ~L~~~~~l~~lp-~~~~~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~l~~l~~l~l~~~~ 603 (720)
++++|.+.+..| ..+..+++|++|++++|.+.+.++..+..+++|+.|++++|.+.+ ..+..+..+..|+.++++.+.
T Consensus 405 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~ 484 (606)
T 3vq2_A 405 DFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQ 484 (606)
T ss_dssp ECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC
T ss_pred ECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCc
Confidence 999997777666 578899999999999999999887777777999999999998887 467888899999999999988
Q ss_pred cccccCCCCCCCCCCCcccccEEECCCCCCccc-cccccCCCCCceeeccccccccccCC----cccccceEeeecCccc
Q 047161 604 SMALMLPSLSGLCSLTELNLKKLNLRRNNFVSL-RGTINHLPKFKHLKLDDCKRLRSLSE----LPSDIKKVRVHGCTSL 678 (720)
Q Consensus 604 ~~~~~~~~l~~l~~L~~L~L~~L~Ls~n~l~~l-p~~i~~l~~L~~L~L~~c~~L~~lp~----lp~~L~~L~l~~c~~L 678 (720)
........+.++++| +.|++++|.++.+ |..+.++++|+.|+|++|+ ++.+|. +|.+|+.|++++++-.
T Consensus 485 l~~~~~~~~~~l~~L-----~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~p~~~~~l~~~L~~l~l~~N~~~ 558 (606)
T 3vq2_A 485 LEQISWGVFDTLHRL-----QLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNR-IETSKGILQHFPKSLAFFNLTNNSVA 558 (606)
T ss_dssp CCEECTTTTTTCTTC-----CEEECCSSCCSCEEGGGTTTCTTCCEEECTTSC-CCCEESCGGGSCTTCCEEECCSCCCC
T ss_pred CCccChhhhcccccC-----CEEECCCCcCCCcCHHHccCCCcCCEEECCCCc-CcccCHhHhhhcccCcEEEccCCCcc
Confidence 777666668888877 7888999999876 7888999999999999995 667764 4457999999987754
Q ss_pred ccc
Q 047161 679 ATI 681 (720)
Q Consensus 679 ~~l 681 (720)
...
T Consensus 559 c~c 561 (606)
T 3vq2_A 559 CIC 561 (606)
T ss_dssp CSS
T ss_pred cCC
Confidence 433
No 25
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.87 E-value=3.2e-21 Score=207.55 Aligned_cols=281 Identities=18% Similarity=0.233 Sum_probs=170.5
Q ss_pred cCCcceEEEecccc---CCcccCccccceEEEecCCCCCCCCC-CC-CCCcceEeeCCCCchhHHhhhccCccccCCCCC
Q 047161 381 MTNLRLLKIHNLQL---PAGLESLSDELRLLQWHGYPLKSLPS-SM-EMDKTLECNMCYRRIEQFWKGIKNLIRTPDFTG 455 (720)
Q Consensus 381 l~~L~~L~l~~~~l---~~~~~~l~~~l~~L~~~~~~~~~lp~-~~-~~~~l~~L~l~~~~i~~l~~~~~~l~~~~~~~~ 455 (720)
+.+++.++++++.+ |..+......++.|++++|.+..+|. .+ ...++++|+++++.+..+.. ..|+.
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--------~~~~~ 115 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPP--------HVFQN 115 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCT--------TTTTT
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCH--------HHhcC
Confidence 34555555555543 22211112335555555555555443 22 24455555555554433211 12455
Q ss_pred CCCceeeecCCCCCCCCCCCCcccCccchhhhHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCCCcc
Q 047161 456 APNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLEN 535 (720)
Q Consensus 456 l~~L~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~l~~ 535 (720)
+++|++|++++|. +..+|... ++.+++|++|++++|.+.+..|..++++++|++|++++|.+..
T Consensus 116 l~~L~~L~L~~n~-------l~~l~~~~--------~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~- 179 (390)
T 3o6n_A 116 VPLLTVLVLERND-------LSSLPRGI--------FHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH- 179 (390)
T ss_dssp CTTCCEEECCSSC-------CCCCCTTT--------TTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSB-
T ss_pred CCCCCEEECCCCc-------cCcCCHHH--------hcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCc-
Confidence 5556666665554 34444432 3455555555555555444444445555555555555554332
Q ss_pred cC-c----------------CcCCCCCCCEEeccCcccccCCccccCCcCCceEEEeecCCCCCCCCCcccccccccccc
Q 047161 536 MP-E----------------SLGQMESLEELDVSGTVIRQPVPSIFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQ 598 (720)
Q Consensus 536 lp-~----------------~~~~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~l~ 598 (720)
++ . .+...++|++|++++|.+...+... .++|+.|++.+|.+... ..+..+..++.++
T Consensus 180 ~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~ 254 (390)
T 3o6n_A 180 VDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPV---NVELTILKLQHNNLTDT--AWLLNYPGLVEVD 254 (390)
T ss_dssp CCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCC---CSSCCEEECCSSCCCCC--GGGGGCTTCSEEE
T ss_pred cccccccccceeecccccccccCCCCcceEEECCCCeeeeccccc---cccccEEECCCCCCccc--HHHcCCCCccEEE
Confidence 11 0 0112245666666666666554433 26788888888877765 4677788888888
Q ss_pred cCCCCcccccCCCCCCCCCCCcccccEEECCCCCCccccccccCCCCCceeeccccccccccCC-cc--cccceEeeecC
Q 047161 599 KGSSDSMALMLPSLSGLCSLTELNLKKLNLRRNNFVSLRGTINHLPKFKHLKLDDCKRLRSLSE-LP--SDIKKVRVHGC 675 (720)
Q Consensus 599 l~~~~~~~~~~~~l~~l~~L~~L~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~-lp--~~L~~L~l~~c 675 (720)
++.+.........+..+++| +.|++++|.++.+|..+..+++|+.|++++| .+..+|. ++ ++|+.|++++|
T Consensus 255 Ls~n~l~~~~~~~~~~l~~L-----~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~N 328 (390)
T 3o6n_A 255 LSYNELEKIMYHPFVKMQRL-----ERLYISNNRLVALNLYGQPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDHN 328 (390)
T ss_dssp CCSSCCCEEESGGGTTCSSC-----CEEECCSSCCCEEECSSSCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEECCSS
T ss_pred CCCCcCCCcChhHccccccC-----CEEECCCCcCcccCcccCCCCCCCEEECCCC-cceecCccccccCcCCEEECCCC
Confidence 88887766655567777776 7888899999999988888999999999999 4556653 22 67999999987
Q ss_pred cccccchhhccCchhHhhhhhhcc
Q 047161 676 TSLATISDALRSCNSATSRIFCIN 699 (720)
Q Consensus 676 ~~L~~lp~~~~~~~~L~~l~~~~n 699 (720)
. +..+| +..+++|+.+.+.+|
T Consensus 329 ~-i~~~~--~~~~~~L~~L~l~~N 349 (390)
T 3o6n_A 329 S-IVTLK--LSTHHTLKNLTLSHN 349 (390)
T ss_dssp C-CCCCC--CCTTCCCSEEECCSS
T ss_pred c-cceeC--chhhccCCEEEcCCC
Confidence 6 56665 667888888777765
No 26
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.87 E-value=8.4e-22 Score=233.11 Aligned_cols=343 Identities=15% Similarity=0.146 Sum_probs=198.8
Q ss_pred HHHHHhhhcCCchhhhhhhcCCCCCCCccccchhhhhHHHHhc---CcchhccCCcceEEEecccc----CCcccCcccc
Q 047161 332 LDVLEISFNGLKGRIEIMRKSPEEPGKCSRLWKVADVSHVLRR---NTAFLKMTNLRLLKIHNLQL----PAGLESLSDE 404 (720)
Q Consensus 332 l~~L~lSyn~L~~~~~~~~~~p~~~~~l~~Lw~~~~~~~~~~~---~~~~~~l~~L~~L~l~~~~l----~~~~~~l~~~ 404 (720)
++.|++|+|.+.... |..+..+.+|..++...+.... ..+|.++++|++|++++|.+ |..+..+ ..
T Consensus 26 l~~LdLs~N~i~~i~------~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l-~~ 98 (844)
T 3j0a_A 26 TERLLLSFNYIRTVT------ASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGL-FH 98 (844)
T ss_dssp CCEEEEESCCCCEEC------SSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSC-SS
T ss_pred cCEEECCCCcCCccC------hhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCC-cc
Confidence 467889999987665 7778888888877766553221 23688899999999998876 3445544 45
Q ss_pred ceEEEecCCCCCC-CCCC--C-CCCcceEeeCCCCchhHHhhhccCccccCCCCCCCCceeeecCCCCCCC-------CC
Q 047161 405 LRLLQWHGYPLKS-LPSS--M-EMDKTLECNMCYRRIEQFWKGIKNLIRTPDFTGAPNLEELILDGCKRLQ-------NC 473 (720)
Q Consensus 405 l~~L~~~~~~~~~-lp~~--~-~~~~l~~L~l~~~~i~~l~~~~~~l~~~~~~~~l~~L~~L~L~~~~~l~-------~~ 473 (720)
++.|++++|.+.. +|.. + ...++++|++++|.+..+. ..+.|+++++|++|+|++|.--. .+
T Consensus 99 L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~-------~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l 171 (844)
T 3j0a_A 99 LFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLY-------LHPSFGKLNSLKSIDFSSNQIFLVCEHELEPL 171 (844)
T ss_dssp CCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCC-------CCGGGGTCSSCCEEEEESSCCCCCCSGGGHHH
T ss_pred cCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccc-------cchhHhhCCCCCEEECCCCcCCeeCHHHcccc
Confidence 8899999998875 4443 3 4678888998888775431 11347888999999999886210 00
Q ss_pred --CCCcccC--ccchhhhHHHHhccCC------CCcEEeccCCCCCcccCCCCCC-------------------------
Q 047161 474 --TSLTTLP--REIATESLQKLIELLT------GLVFLNLNDCKILVRLPSTING------------------------- 518 (720)
Q Consensus 474 --~~L~~lp--~~~~~~~l~~~i~~l~------~L~~L~Ls~n~~~~~lp~~i~~------------------------- 518 (720)
++|+.+. .+...+..|..++.++ +|++|++++|.+.+..|..+..
T Consensus 172 ~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~ 251 (844)
T 3j0a_A 172 QGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHN 251 (844)
T ss_dssp HHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSS
T ss_pred cCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccc
Confidence 1111110 0000000111122222 2566666665443333322211
Q ss_pred -------------CCCCCEEeccCCCCCcccCcCcCCCCCCCEEeccCcccccCCccccCCcCCceEEEeecCCCCCCCC
Q 047161 519 -------------WKSLRTVNLSRCSKLENMPESLGQMESLEELDVSGTVIRQPVPSIFFPSRILKVYLFVDTRDHRTSS 585 (720)
Q Consensus 519 -------------l~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 585 (720)
.++|++|++++|.+.+..|..+..+++|+.|++++|.+.+.++..+..+++|+.|++++|.+..+.+
T Consensus 252 l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 331 (844)
T 3j0a_A 252 IKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYS 331 (844)
T ss_dssp STTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCS
T ss_pred cCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCH
Confidence 1456666666655555455556666666666666666666555554444666666666666655555
Q ss_pred CcccccccccccccCCCCcccccCCCCCCCCCCCcccccEEECCCCCCccccccccCCCCCceeeccccccccccCCccc
Q 047161 586 SSWHLWFPFSLMQKGSSDSMALMLPSLSGLCSLTELNLKKLNLRRNNFVSLRGTINHLPKFKHLKLDDCKRLRSLSELPS 665 (720)
Q Consensus 586 ~~~~~l~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~lp~ 665 (720)
..+..+..++.+++..+.........+.++++| +.|++++|.++.++. +++|+.|++++| .+..+|..+.
T Consensus 332 ~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L-----~~L~Ls~N~l~~i~~----~~~L~~L~l~~N-~l~~l~~~~~ 401 (844)
T 3j0a_A 332 SNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKL-----QTLDLRDNALTTIHF----IPSIPDIFLSGN-KLVTLPKINL 401 (844)
T ss_dssp CSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCC-----CEEEEETCCSCCCSS----CCSCSEEEEESC-CCCCCCCCCT
T ss_pred HHhcCCCCCCEEECCCCCCCccChhhhcCCCCC-----CEEECCCCCCCcccC----CCCcchhccCCC-Cccccccccc
Confidence 566666666666666555444333345555544 455556666554442 556666666666 3445555555
Q ss_pred ccceEeeecCcccccch--hhccCchhHhhhhhhcc
Q 047161 666 DIKKVRVHGCTSLATIS--DALRSCNSATSRIFCIN 699 (720)
Q Consensus 666 ~L~~L~l~~c~~L~~lp--~~~~~~~~L~~l~~~~n 699 (720)
+++.|+++++. +..++ ..+.++++|+.|++..|
T Consensus 402 ~l~~L~ls~N~-l~~l~~~~~~~~l~~L~~L~Ls~N 436 (844)
T 3j0a_A 402 TANLIHLSENR-LENLDILYFLLRVPHLQILILNQN 436 (844)
T ss_dssp TCCEEECCSCC-CCSSTTHHHHTTCTTCCEEEEESC
T ss_pred ccceeecccCc-cccCchhhhhhcCCccceeeCCCC
Confidence 66666666543 44433 23446777777666654
No 27
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.86 E-value=1.4e-21 Score=220.91 Aligned_cols=337 Identities=15% Similarity=0.145 Sum_probs=197.0
Q ss_pred HHHHhhhcCCchhhhhhhcCCCCCCCccccchhhhhHHHHhcC--cchhccCCcceEEEeccccC----CcccCccccce
Q 047161 333 DVLEISFNGLKGRIEIMRKSPEEPGKCSRLWKVADVSHVLRRN--TAFLKMTNLRLLKIHNLQLP----AGLESLSDELR 406 (720)
Q Consensus 333 ~~L~lSyn~L~~~~~~~~~~p~~~~~l~~Lw~~~~~~~~~~~~--~~~~~l~~L~~L~l~~~~l~----~~~~~l~~~l~ 406 (720)
+.+++++++|... |..+. .++..++...+.+.+. ..|.++++|+.|++++|.+. ..+..+ ..++
T Consensus 34 ~~l~ls~~~L~~i-------p~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l-~~L~ 103 (562)
T 3a79_B 34 SMVDYSNRNLTHV-------PKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFN-QDLE 103 (562)
T ss_dssp CEEECTTSCCCSC-------CTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTC-TTCC
T ss_pred cEEEcCCCCCccC-------CCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCC-CCCC
Confidence 4567777777653 43322 2333333333444433 26778888888888888663 333333 4588
Q ss_pred EEEecCCCCCCCCCCCCCCcceEeeCCCCchhHHhhhccCccccCCCCCCCCceeeecCCCCC----CCCCCCC--ccc-
Q 047161 407 LLQWHGYPLKSLPSSMEMDKTLECNMCYRRIEQFWKGIKNLIRTPDFTGAPNLEELILDGCKR----LQNCTSL--TTL- 479 (720)
Q Consensus 407 ~L~~~~~~~~~lp~~~~~~~l~~L~l~~~~i~~l~~~~~~l~~~~~~~~l~~L~~L~L~~~~~----l~~~~~L--~~l- 479 (720)
+|++++|.+..+|.. ...++++|++++|++..+.. +..|+++++|++|++++|.- +..++++ +.+
T Consensus 104 ~L~Ls~N~l~~lp~~-~l~~L~~L~Ls~N~l~~l~~-------p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~ 175 (562)
T 3a79_B 104 YLDVSHNRLQNISCC-PMASLRHLDLSFNDFDVLPV-------CKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCIL 175 (562)
T ss_dssp EEECTTSCCCEECSC-CCTTCSEEECCSSCCSBCCC-------CGGGGGCTTCCEEEEECSBCCTTTTGGGTTSCEEEEE
T ss_pred EEECCCCcCCccCcc-ccccCCEEECCCCCccccCc-------hHhhcccCcccEEecCCCccccCchhhhhhceeeEEE
Confidence 888888888888877 77788888888877654321 11245555555555555531 1111111 000
Q ss_pred ------------Cccch----------------------------------------------h----------------
Q 047161 480 ------------PREIA----------------------------------------------T---------------- 485 (720)
Q Consensus 480 ------------p~~~~----------------------------------------------~---------------- 485 (720)
|..+. .
T Consensus 176 L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~ 255 (562)
T 3a79_B 176 LDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVT 255 (562)
T ss_dssp EEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEE
T ss_pred eecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEE
Confidence 00000 0
Q ss_pred -----------hhHHHHhccCCCCcEEeccCCCCCcccCCCC-----CCCCC--------------------------CC
Q 047161 486 -----------ESLQKLIELLTGLVFLNLNDCKILVRLPSTI-----NGWKS--------------------------LR 523 (720)
Q Consensus 486 -----------~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i-----~~l~~--------------------------L~ 523 (720)
..++..+ ..++|++|++++|.+.+.+|..+ +++++ |+
T Consensus 256 L~~~~l~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~ 334 (562)
T 3a79_B 256 LQHIETTWKCSVKLFQFF-WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIK 334 (562)
T ss_dssp EEEEEECHHHHHHHHHHH-TTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCS
T ss_pred ecCCcCcHHHHHHHHHhh-hcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcce
Confidence 0011111 12378888888887766788766 33332 44
Q ss_pred EEeccCCCCCcccCcCcCCCCCCCEEeccCcccccCCccccCCcCCceEEEeecCCCCCCCC--CcccccccccccccCC
Q 047161 524 TVNLSRCSKLENMPESLGQMESLEELDVSGTVIRQPVPSIFFPSRILKVYLFVDTRDHRTSS--SSWHLWFPFSLMQKGS 601 (720)
Q Consensus 524 ~L~L~~~~~l~~lp~~~~~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~l~~l~~l~l~~ 601 (720)
+|++++|.+.. .+ ..+.+++|++|++++|.+.+..+..+..+++|+.|++++|.+..+.. ..+..+..++.++++.
T Consensus 335 ~L~l~~n~~~~-~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~ 412 (562)
T 3a79_B 335 MLSISDTPFIH-MV-CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSL 412 (562)
T ss_dssp EEEEESSCCCC-CC-CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTT
T ss_pred EEEccCCCccc-cc-CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCC
Confidence 44444443211 11 11567778888888887777555555555778888887777776542 4567777777777777
Q ss_pred CCccc-ccCCCCCCCCCCCcccccEEECCCCCCc-cccccccCCCCCceeeccccccccccCCcc---cccceEeeecCc
Q 047161 602 SDSMA-LMLPSLSGLCSLTELNLKKLNLRRNNFV-SLRGTINHLPKFKHLKLDDCKRLRSLSELP---SDIKKVRVHGCT 676 (720)
Q Consensus 602 ~~~~~-~~~~~l~~l~~L~~L~L~~L~Ls~n~l~-~lp~~i~~l~~L~~L~L~~c~~L~~lp~lp---~~L~~L~l~~c~ 676 (720)
+.... .....+..+++| +.|++++|.++ .+|..+. ++|+.|++++| .++.+|.-- ++|+.|++++|.
T Consensus 413 N~l~~~~~~~~~~~l~~L-----~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N-~l~~ip~~~~~l~~L~~L~L~~N~ 484 (562)
T 3a79_B 413 NSLNSHAYDRTCAWAESI-----LVLNLSSNMLTGSVFRCLP--PKVKVLDLHNN-RIMSIPKDVTHLQALQELNVASNQ 484 (562)
T ss_dssp SCCBSCCSSCCCCCCTTC-----CEEECCSSCCCGGGGSSCC--TTCSEEECCSS-CCCCCCTTTTSSCCCSEEECCSSC
T ss_pred CcCCCccChhhhcCcccC-----CEEECCCCCCCcchhhhhc--CcCCEEECCCC-cCcccChhhcCCCCCCEEECCCCC
Confidence 76655 222236666655 66777777775 3444333 57788888877 455665311 457778887754
Q ss_pred ccccchhh-ccCchhHhhhhhhcc
Q 047161 677 SLATISDA-LRSCNSATSRIFCIN 699 (720)
Q Consensus 677 ~L~~lp~~-~~~~~~L~~l~~~~n 699 (720)
++.+|.. +..+++|+.+++..|
T Consensus 485 -l~~l~~~~~~~l~~L~~L~l~~N 507 (562)
T 3a79_B 485 -LKSVPDGVFDRLTSLQYIWLHDN 507 (562)
T ss_dssp -CCCCCTTSTTTCTTCCCEECCSC
T ss_pred -CCCCCHHHHhcCCCCCEEEecCC
Confidence 6677765 777777777776665
No 28
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.86 E-value=1.8e-21 Score=213.18 Aligned_cols=278 Identities=17% Similarity=0.116 Sum_probs=154.9
Q ss_pred cchhccCCcceEEEeccccCCcccCccccceEEEecCCCCCCCCCCCCCCcceEeeCCCCchhHHhhhccCccccCCCCC
Q 047161 376 TAFLKMTNLRLLKIHNLQLPAGLESLSDELRLLQWHGYPLKSLPSSMEMDKTLECNMCYRRIEQFWKGIKNLIRTPDFTG 455 (720)
Q Consensus 376 ~~~~~l~~L~~L~l~~~~l~~~~~~l~~~l~~L~~~~~~~~~lp~~~~~~~l~~L~l~~~~i~~l~~~~~~l~~~~~~~~ 455 (720)
+.+..+++|+.|++++|.+..........++.|++++|.+..+| .....++++|++++|++..+ | ++.
T Consensus 58 ~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~l~~L~~L~L~~N~l~~l----------~-~~~ 125 (457)
T 3bz5_A 58 TGIEKLTGLTKLICTSNNITTLDLSQNTNLTYLACDSNKLTNLD-VTPLTKLTYLNCDTNKLTKL----------D-VSQ 125 (457)
T ss_dssp TTGGGCTTCSEEECCSSCCSCCCCTTCTTCSEEECCSSCCSCCC-CTTCTTCCEEECCSSCCSCC----------C-CTT
T ss_pred hhhcccCCCCEEEccCCcCCeEccccCCCCCEEECcCCCCceee-cCCCCcCCEEECCCCcCCee----------c-CCC
Confidence 34556666666666666553321122234666666666666654 22345666666666655332 2 556
Q ss_pred CCCceeeecCCCCCCCCCCCCcccCccchhhhHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCCCcc
Q 047161 456 APNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLEN 535 (720)
Q Consensus 456 l~~L~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~l~~ 535 (720)
+++|++|++++|. ++.++ ++.+++|++|++++|..++.+ .++.+++|++|++++|.+. .
T Consensus 126 l~~L~~L~l~~N~-------l~~l~-----------l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~-~ 184 (457)
T 3bz5_A 126 NPLLTYLNCARNT-------LTEID-----------VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKIT-E 184 (457)
T ss_dssp CTTCCEEECTTSC-------CSCCC-----------CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCC-C
T ss_pred CCcCCEEECCCCc-------cceec-----------cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccc-e
Confidence 6666666666665 23321 445666666776666545555 3556666777777666433 3
Q ss_pred cCcCcCCCCCCCEEeccCcccccCCccccCCcCCceEEEeecCCCCCCCCCcccccccccccccCCCCcccccCCCCCCC
Q 047161 536 MPESLGQMESLEELDVSGTVIRQPVPSIFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSLSGL 615 (720)
Q Consensus 536 lp~~~~~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~l~~l 615 (720)
+| ++.+++|+.|++++|.+.+.+ +..+++|+.|++++|.+.+++ +..+..++.+++..+...... ++.+
T Consensus 185 l~--l~~l~~L~~L~l~~N~l~~~~---l~~l~~L~~L~Ls~N~l~~ip---~~~l~~L~~L~l~~N~l~~~~---~~~l 253 (457)
T 3bz5_A 185 LD--VSQNKLLNRLNCDTNNITKLD---LNQNIQLTFLDCSSNKLTEID---VTPLTQLTYFDCSVNPLTELD---VSTL 253 (457)
T ss_dssp CC--CTTCTTCCEEECCSSCCSCCC---CTTCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSSCCSCCC---CTTC
T ss_pred ec--cccCCCCCEEECcCCcCCeec---cccCCCCCEEECcCCcccccC---ccccCCCCEEEeeCCcCCCcC---HHHC
Confidence 44 566666777777766666652 223366677777666666643 555666666666666554432 3344
Q ss_pred CCCCcc-----cccEEECCCCCCc-cccccccCCCCCceeeccccccccccCCcccccceEeeecCcccccchh------
Q 047161 616 CSLTEL-----NLKKLNLRRNNFV-SLRGTINHLPKFKHLKLDDCKRLRSLSELPSDIKKVRVHGCTSLATISD------ 683 (720)
Q Consensus 616 ~~L~~L-----~L~~L~Ls~n~l~-~lp~~i~~l~~L~~L~L~~c~~L~~lp~lp~~L~~L~l~~c~~L~~lp~------ 683 (720)
++|+.| +|+.|++++|.+. .+| +..+++|+.|++++|+.++.+|.-.++|+.|++++|++|+.+.-
T Consensus 254 ~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~ 331 (457)
T 3bz5_A 254 SKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELT 331 (457)
T ss_dssp TTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCS
T ss_pred CCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCccc
Confidence 444444 3455666666533 344 35667777777777776666654333444444444444433320
Q ss_pred --hccCchhHhhhhhhcc
Q 047161 684 --ALRSCNSATSRIFCIN 699 (720)
Q Consensus 684 --~~~~~~~L~~l~~~~n 699 (720)
.+.+|++|+.|++..|
T Consensus 332 ~l~l~~l~~L~~L~l~~N 349 (457)
T 3bz5_A 332 ELDVSHNTKLKSLSCVNA 349 (457)
T ss_dssp CCCCTTCTTCSEEECCSS
T ss_pred ccccccCCcCcEEECCCC
Confidence 2555666666555544
No 29
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.86 E-value=1.7e-21 Score=214.87 Aligned_cols=285 Identities=15% Similarity=0.161 Sum_probs=161.1
Q ss_pred chhccCCcceEEEeccccCCc--ccCccccceEEEecCCCCCCCCCCCCCCcceEeeCCCCchhHHhh--hc--------
Q 047161 377 AFLKMTNLRLLKIHNLQLPAG--LESLSDELRLLQWHGYPLKSLPSSMEMDKTLECNMCYRRIEQFWK--GI-------- 444 (720)
Q Consensus 377 ~~~~l~~L~~L~l~~~~l~~~--~~~l~~~l~~L~~~~~~~~~lp~~~~~~~l~~L~l~~~~i~~l~~--~~-------- 444 (720)
.+..+++|++|++++|.+... +.. ...++.|++++|.+..+|......++++|+++++.+..+.. ..
T Consensus 85 ~~~~l~~L~~L~l~~n~l~~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l 163 (466)
T 1o6v_A 85 PLKNLTKLVDILMNNNQIADITPLAN-LTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSF 163 (466)
T ss_dssp GGTTCTTCCEEECCSSCCCCCGGGTT-CTTCCEEECCSSCCCCCGGGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEE
T ss_pred hhhccccCCEEECCCCccccChhhcC-CCCCCEEECCCCCCCCChHHcCCCCCCEEECCCCccCCChhhccCCcccEeec
Confidence 355555666666655554221 122 23355666666655555543344555555555554433211 00
Q ss_pred -cCccccCCCCCCCCceeeecCCCCCCCCCCCCcccCccchhhhHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCC
Q 047161 445 -KNLIRTPDFTGAPNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLR 523 (720)
Q Consensus 445 -~~l~~~~~~~~l~~L~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~ 523 (720)
..+...+.+..+++|++|++++|. +..++. +..+++|++|++++|.+.+..| ++.+++|+
T Consensus 164 ~~~~~~~~~~~~l~~L~~L~l~~n~-------l~~~~~----------l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~ 224 (466)
T 1o6v_A 164 GNQVTDLKPLANLTTLERLDISSNK-------VSDISV----------LAKLTNLESLIATNNQISDITP--LGILTNLD 224 (466)
T ss_dssp EESCCCCGGGTTCTTCCEEECCSSC-------CCCCGG----------GGGCTTCSEEECCSSCCCCCGG--GGGCTTCC
T ss_pred CCcccCchhhccCCCCCEEECcCCc-------CCCChh----------hccCCCCCEEEecCCccccccc--ccccCCCC
Confidence 011223346777778888887776 233321 5667777777777776444333 56677777
Q ss_pred EEeccCCCCCcccCcCcCCCCCCCEEeccCcccccCCccccCCcCCceEEEeecCCCCCCCCCcccccccccccccCCCC
Q 047161 524 TVNLSRCSKLENMPESLGQMESLEELDVSGTVIRQPVPSIFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSD 603 (720)
Q Consensus 524 ~L~L~~~~~l~~lp~~~~~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~ 603 (720)
+|++++|.+. .++ .+..+++|++|++++|.+.+.++ +..+++|+.|++++|.+....+ +..+..++.+++..+.
T Consensus 225 ~L~l~~n~l~-~~~-~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~ 298 (466)
T 1o6v_A 225 ELSLNGNQLK-DIG-TLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQ 298 (466)
T ss_dssp EEECCSSCCC-CCG-GGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSC
T ss_pred EEECCCCCcc-cch-hhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCc
Confidence 7777776533 333 46667777777777777766655 3334677777777776666544 5666666667666655
Q ss_pred cccccCCCCCCCCCCCcccccEEECCCCCCccccccccCCCCCceeeccccccccccCCcc--cccceEeeecCcccccc
Q 047161 604 SMALMLPSLSGLCSLTELNLKKLNLRRNNFVSLRGTINHLPKFKHLKLDDCKRLRSLSELP--SDIKKVRVHGCTSLATI 681 (720)
Q Consensus 604 ~~~~~~~~l~~l~~L~~L~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~lp--~~L~~L~l~~c~~L~~l 681 (720)
..... .+..+++| +.|++++|.++.++. +..+++|+.|++++| .+..++.+. ++|+.|++++|......
T Consensus 299 l~~~~--~~~~l~~L-----~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~l~~n~l~~~~ 369 (466)
T 1o6v_A 299 LEDIS--PISNLKNL-----TYLTLYFNNISDISP-VSSLTKLQRLFFYNN-KVSDVSSLANLTNINWLSAGHNQISDLT 369 (466)
T ss_dssp CSCCG--GGGGCTTC-----SEEECCSSCCSCCGG-GGGCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSSCCCBCG
T ss_pred ccCch--hhcCCCCC-----CEEECcCCcCCCchh-hccCccCCEeECCCC-ccCCchhhccCCCCCEEeCCCCccCccc
Confidence 44322 24455544 566667776666553 566677777777776 344444333 45777777766543333
Q ss_pred hhhccCchhHhhhhhhc
Q 047161 682 SDALRSCNSATSRIFCI 698 (720)
Q Consensus 682 p~~~~~~~~L~~l~~~~ 698 (720)
| +..+++|+.+.+..
T Consensus 370 ~--~~~l~~L~~L~l~~ 384 (466)
T 1o6v_A 370 P--LANLTRITQLGLND 384 (466)
T ss_dssp G--GTTCTTCCEEECCC
T ss_pred h--hhcCCCCCEEeccC
Confidence 3 56666666655543
No 30
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.86 E-value=4.7e-21 Score=217.92 Aligned_cols=281 Identities=18% Similarity=0.227 Sum_probs=162.4
Q ss_pred cCCcceEEEecccc---CCcccCccccceEEEecCCCCCCCCC-CC-CCCcceEeeCCCCchhHHhhhccCccccCCCCC
Q 047161 381 MTNLRLLKIHNLQL---PAGLESLSDELRLLQWHGYPLKSLPS-SM-EMDKTLECNMCYRRIEQFWKGIKNLIRTPDFTG 455 (720)
Q Consensus 381 l~~L~~L~l~~~~l---~~~~~~l~~~l~~L~~~~~~~~~lp~-~~-~~~~l~~L~l~~~~i~~l~~~~~~l~~~~~~~~ 455 (720)
+.+++.++++++.+ |..+......++.|++++|.+..+|. .+ ...+++.|++++|.+..+.. ..|+.
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--------~~~~~ 121 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPP--------HVFQN 121 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCT--------TTTTT
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCH--------HHHcC
Confidence 34455555555443 22211112335555555555554442 22 23455555555554433211 12455
Q ss_pred CCCceeeecCCCCCCCCCCCCcccCccchhhhHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCCCcc
Q 047161 456 APNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLEN 535 (720)
Q Consensus 456 l~~L~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~l~~ 535 (720)
+++|++|+|++|. +..+|... ++.+++|++|+|++|.+.+..|..++++++|++|++++|.+.+
T Consensus 122 l~~L~~L~L~~n~-------l~~l~~~~--------~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~- 185 (597)
T 3oja_B 122 VPLLTVLVLERND-------LSSLPRGI--------FHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH- 185 (597)
T ss_dssp CTTCCEEECCSSC-------CCCCCTTT--------TTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSB-
T ss_pred CCCCCEEEeeCCC-------CCCCCHHH--------hccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCC-
Confidence 5555666665554 34444432 3455555555555555444444455555555555555554332
Q ss_pred cC-c----------------CcCCCCCCCEEeccCcccccCCccccCCcCCceEEEeecCCCCCCCCCcccccccccccc
Q 047161 536 MP-E----------------SLGQMESLEELDVSGTVIRQPVPSIFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQ 598 (720)
Q Consensus 536 lp-~----------------~~~~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~l~ 598 (720)
+| . .+...++|+.|++++|.+...++... ++|+.|++++|.+.+. ..+..+..|..++
T Consensus 186 ~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~---~~L~~L~L~~n~l~~~--~~l~~l~~L~~L~ 260 (597)
T 3oja_B 186 VDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVN---VELTILKLQHNNLTDT--AWLLNYPGLVEVD 260 (597)
T ss_dssp CCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCC---SCCCEEECCSSCCCCC--GGGGGCTTCSEEE
T ss_pred cChhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccC---CCCCEEECCCCCCCCC--hhhccCCCCCEEE
Confidence 21 0 11223345555555555555444332 5677777777776653 5567777888888
Q ss_pred cCCCCcccccCCCCCCCCCCCcccccEEECCCCCCccccccccCCCCCceeeccccccccccCCc-c--cccceEeeecC
Q 047161 599 KGSSDSMALMLPSLSGLCSLTELNLKKLNLRRNNFVSLRGTINHLPKFKHLKLDDCKRLRSLSEL-P--SDIKKVRVHGC 675 (720)
Q Consensus 599 l~~~~~~~~~~~~l~~l~~L~~L~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~l-p--~~L~~L~l~~c 675 (720)
++.+......+..++++++| +.|+|++|.++.+|..+..+++|+.|+|++|. +..+|.. . ++|+.|++++|
T Consensus 261 Ls~N~l~~~~~~~~~~l~~L-----~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~l~~L~~L~L~~N 334 (597)
T 3oja_B 261 LSYNELEKIMYHPFVKMQRL-----ERLYISNNRLVALNLYGQPIPTLKVLDLSHNH-LLHVERNQPQFDRLENLYLDHN 334 (597)
T ss_dssp CCSSCCCEEESGGGTTCSSC-----CEEECTTSCCCEEECSSSCCTTCCEEECCSSC-CCCCGGGHHHHTTCSEEECCSS
T ss_pred CCCCccCCCCHHHhcCccCC-----CEEECCCCCCCCCCcccccCCCCcEEECCCCC-CCccCcccccCCCCCEEECCCC
Confidence 88877766655567777766 67788888888888777788888888888884 5555531 1 56888888887
Q ss_pred cccccchhhccCchhHhhhhhhcc
Q 047161 676 TSLATISDALRSCNSATSRIFCIN 699 (720)
Q Consensus 676 ~~L~~lp~~~~~~~~L~~l~~~~n 699 (720)
. +..+| +..+++|+.+.+.+|
T Consensus 335 ~-l~~~~--~~~~~~L~~L~l~~N 355 (597)
T 3oja_B 335 S-IVTLK--LSTHHTLKNLTLSHN 355 (597)
T ss_dssp C-CCCCC--CCTTCCCSEEECCSS
T ss_pred C-CCCcC--hhhcCCCCEEEeeCC
Confidence 6 45554 556777777776655
No 31
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.86 E-value=3.2e-21 Score=212.10 Aligned_cols=133 Identities=17% Similarity=0.191 Sum_probs=98.2
Q ss_pred CCCCEEeccCcccccCCccccCCcCCceEEEeecCCCCCCCCCcccccccccccccCCCCcccccCCCCCCCCCCCcccc
Q 047161 544 ESLEELDVSGTVIRQPVPSIFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSLSGLCSLTELNL 623 (720)
Q Consensus 544 ~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~L 623 (720)
++|++|++++|.+.+.++..+..+++|+.|++++|.+....+..+..+..|+.++++.+.........+.++++|
T Consensus 275 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L----- 349 (455)
T 3v47_A 275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKL----- 349 (455)
T ss_dssp SCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTC-----
T ss_pred cCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccC-----
Confidence 578888888888888777766666888888888888888777788888888888888777655544456777766
Q ss_pred cEEECCCCCCccc-cccccCCCCCceeeccccccccccCC--c--ccccceEeeecCcccccch
Q 047161 624 KKLNLRRNNFVSL-RGTINHLPKFKHLKLDDCKRLRSLSE--L--PSDIKKVRVHGCTSLATIS 682 (720)
Q Consensus 624 ~~L~Ls~n~l~~l-p~~i~~l~~L~~L~L~~c~~L~~lp~--l--p~~L~~L~l~~c~~L~~lp 682 (720)
+.|+|++|.++.+ |.++..+++|++|+|++| .++.+|. + .++|+.|++++++--...|
T Consensus 350 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 350 EVLDLSYNHIRALGDQSFLGLPNLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp CEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred CEEECCCCcccccChhhccccccccEEECCCC-ccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 6778888888866 567788888888888887 4555553 1 1568888888776544444
No 32
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.86 E-value=4.1e-21 Score=203.33 Aligned_cols=279 Identities=15% Similarity=0.214 Sum_probs=221.7
Q ss_pred chhccCCcceEEEeccccCC--cccCccccceEEEecCCCCCCCCCCCCCCcceEeeCCCCchhHHhhhccCccccCCCC
Q 047161 377 AFLKMTNLRLLKIHNLQLPA--GLESLSDELRLLQWHGYPLKSLPSSMEMDKTLECNMCYRRIEQFWKGIKNLIRTPDFT 454 (720)
Q Consensus 377 ~~~~l~~L~~L~l~~~~l~~--~~~~l~~~l~~L~~~~~~~~~lp~~~~~~~l~~L~l~~~~i~~l~~~~~~l~~~~~~~ 454 (720)
.+..+++|+.|+++++.+.. .+.. ...++.|++++|.+..+|......++++|+++++.+..+ +.+.
T Consensus 39 ~~~~l~~L~~L~l~~~~i~~~~~~~~-~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~~----------~~~~ 107 (347)
T 4fmz_A 39 TQEELESITKLVVAGEKVASIQGIEY-LTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDI----------SALQ 107 (347)
T ss_dssp CHHHHTTCSEEECCSSCCCCCTTGGG-CTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCC----------GGGT
T ss_pred cchhcccccEEEEeCCccccchhhhh-cCCccEEEccCCccccchhhhcCCcCCEEEccCCcccCc----------hHHc
Confidence 45678889999999887632 2333 346999999999999988755678899999998876543 4588
Q ss_pred CCCCceeeecCCCCCCCCCCCCcccCccchhhhHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCCCc
Q 047161 455 GAPNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLE 534 (720)
Q Consensus 455 ~l~~L~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~l~ 534 (720)
.+++|++|++++|. +..++. +..+++|++|++++|.....++ .++.+++|++|++++|....
T Consensus 108 ~l~~L~~L~l~~n~-------i~~~~~----------~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~ 169 (347)
T 4fmz_A 108 NLTNLRELYLNEDN-------ISDISP----------LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKD 169 (347)
T ss_dssp TCTTCSEEECTTSC-------CCCCGG----------GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCC
T ss_pred CCCcCCEEECcCCc-------ccCchh----------hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCC
Confidence 99999999999987 455544 6779999999999997666555 48899999999999986544
Q ss_pred ccCcCcCCCCCCCEEeccCcccccCCccccCCcCCceEEEeecCCCCCCCCCcccccccccccccCCCCcccccCCCCCC
Q 047161 535 NMPESLGQMESLEELDVSGTVIRQPVPSIFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSLSG 614 (720)
Q Consensus 535 ~lp~~~~~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~l~~ 614 (720)
++. +..+++|++|++++|.+.+.++ +..+++|+.|++.+|.+....+ +..+..++.+++..+....... +..
T Consensus 170 -~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~ 241 (347)
T 4fmz_A 170 -VTP-IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LAN 241 (347)
T ss_dssp -CGG-GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTT
T ss_pred -chh-hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhc
Confidence 443 8899999999999999988776 3445899999999998877655 7788889999998877654332 666
Q ss_pred CCCCCcccccEEECCCCCCccccccccCCCCCceeeccccccccccCCcc--cccceEeeecCcccccchhhccCchhHh
Q 047161 615 LCSLTELNLKKLNLRRNNFVSLRGTINHLPKFKHLKLDDCKRLRSLSELP--SDIKKVRVHGCTSLATISDALRSCNSAT 692 (720)
Q Consensus 615 l~~L~~L~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~lp--~~L~~L~l~~c~~L~~lp~~~~~~~~L~ 692 (720)
+++| +.|++++|.++.++ .+..+++|+.|++++| .+..++.+. ++|+.|++++|......|..+.++++|+
T Consensus 242 l~~L-----~~L~l~~n~l~~~~-~~~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 314 (347)
T 4fmz_A 242 LSQL-----TWLEIGTNQISDIN-AVKDLTKLKMLNVGSN-QISDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLT 314 (347)
T ss_dssp CTTC-----CEEECCSSCCCCCG-GGTTCTTCCEEECCSS-CCCCCGGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCS
T ss_pred CCCC-----CEEECCCCccCCCh-hHhcCCCcCEEEccCC-ccCCChhhcCCCCCCEEECcCCcCCCcChhHhhccccCC
Confidence 7766 78889999998875 6888999999999999 466666443 6799999999986667778899999999
Q ss_pred hhhhhcc
Q 047161 693 SRIFCIN 699 (720)
Q Consensus 693 ~l~~~~n 699 (720)
.+++.+|
T Consensus 315 ~L~L~~n 321 (347)
T 4fmz_A 315 TLFLSQN 321 (347)
T ss_dssp EEECCSS
T ss_pred EEEccCC
Confidence 9777755
No 33
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.86 E-value=9.5e-22 Score=204.77 Aligned_cols=221 Identities=15% Similarity=0.168 Sum_probs=107.9
Q ss_pred cceEEEecCCCCC---CCCCCCC-CCcceEeeCCC-CchhHHhhhccCccccCCCCCCCCceeeecCCCCCCCCCCCCc-
Q 047161 404 ELRLLQWHGYPLK---SLPSSME-MDKTLECNMCY-RRIEQFWKGIKNLIRTPDFTGAPNLEELILDGCKRLQNCTSLT- 477 (720)
Q Consensus 404 ~l~~L~~~~~~~~---~lp~~~~-~~~l~~L~l~~-~~i~~l~~~~~~l~~~~~~~~l~~L~~L~L~~~~~l~~~~~L~- 477 (720)
.++.++++++.+. .+|..+. ...++.|++++ +.+... .++.|+.+++|++|+|++|. +.
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~--------~p~~l~~l~~L~~L~Ls~n~-------l~~ 115 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGP--------IPPAIAKLTQLHYLYITHTN-------VSG 115 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESC--------CCGGGGGCTTCSEEEEEEEC-------CEE
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCccccc--------CChhHhcCCCCCEEECcCCe-------eCC
Confidence 4555666666554 3444332 33444444442 332211 01224555555555555554 22
Q ss_pred ccCccchhhhHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCCCcccCcCcCCCC-CCCEEeccCccc
Q 047161 478 TLPREIATESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMPESLGQME-SLEELDVSGTVI 556 (720)
Q Consensus 478 ~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~L~-~L~~L~L~~n~l 556 (720)
.+|.. ++.+++|++|++++|.+.+.+|..++++++|++|++++|.+.+.+|..++.++ +|++|++++|.+
T Consensus 116 ~~p~~---------~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l 186 (313)
T 1ogq_A 116 AIPDF---------LSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRL 186 (313)
T ss_dssp ECCGG---------GGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEE
T ss_pred cCCHH---------HhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCee
Confidence 34443 55555566666655554445555555555666666655555445555555555 555666655555
Q ss_pred ccCCccccCCcCCceEEEeecCCCCCCCCCcccccccccccccCCCCcccccCCCCCCCCCCCcccccEEECCCCCCc-c
Q 047161 557 RQPVPSIFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSLSGLCSLTELNLKKLNLRRNNFV-S 635 (720)
Q Consensus 557 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~L~Ls~n~l~-~ 635 (720)
.+..+..+..++ |+.|++++|.+.+..+..+..+..++.+++..+.... .++.+..+++| ++|++++|.++ .
T Consensus 187 ~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~l~~L-----~~L~Ls~N~l~~~ 259 (313)
T 1ogq_A 187 TGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAF-DLGKVGLSKNL-----NGLDLRNNRIYGT 259 (313)
T ss_dssp EEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECC-BGGGCCCCTTC-----CEEECCSSCCEEC
T ss_pred eccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceee-ecCcccccCCC-----CEEECcCCcccCc
Confidence 544444443323 5555555555554444444444555555444443321 11223333333 44444555544 3
Q ss_pred ccccccCCCCCceeeccccc
Q 047161 636 LRGTINHLPKFKHLKLDDCK 655 (720)
Q Consensus 636 lp~~i~~l~~L~~L~L~~c~ 655 (720)
+|.++..+++|+.|++++|+
T Consensus 260 ~p~~l~~l~~L~~L~Ls~N~ 279 (313)
T 1ogq_A 260 LPQGLTQLKFLHSLNVSFNN 279 (313)
T ss_dssp CCGGGGGCTTCCEEECCSSE
T ss_pred CChHHhcCcCCCEEECcCCc
Confidence 44444455555555555543
No 34
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.86 E-value=2.8e-21 Score=223.75 Aligned_cols=352 Identities=15% Similarity=0.145 Sum_probs=175.5
Q ss_pred HHHHHhhhcCCchhhhhhhcCCCCCCCccccchhhhhHHHHhcC--cchhccCCcceEEEeccccC---C-cccCccccc
Q 047161 332 LDVLEISFNGLKGRIEIMRKSPEEPGKCSRLWKVADVSHVLRRN--TAFLKMTNLRLLKIHNLQLP---A-GLESLSDEL 405 (720)
Q Consensus 332 l~~L~lSyn~L~~~~~~~~~~p~~~~~l~~Lw~~~~~~~~~~~~--~~~~~l~~L~~L~l~~~~l~---~-~~~~l~~~l 405 (720)
++.|++++|.+.+.. |..+..+.+|..++...+.+.+. .+|.++++|+.|++++|.+. . .+.. ...+
T Consensus 27 l~~L~Ls~n~l~~~~------~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~-l~~L 99 (680)
T 1ziw_A 27 ITVLNLTHNQLRRLP------AANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAF-CTNL 99 (680)
T ss_dssp CSEEECCSSCCCCCC------GGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTT-CTTC
T ss_pred CcEEECCCCCCCCcC------HHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhcc-CCCC
Confidence 455667777665542 23344455555544444433332 25667777777777766552 2 1222 2357
Q ss_pred eEEEecCCCCCCCCC-CC-CCCcceEeeCCCCchhHHhhhccCccccCCCCCCCCceeeecCCCCCC---------CCCC
Q 047161 406 RLLQWHGYPLKSLPS-SM-EMDKTLECNMCYRRIEQFWKGIKNLIRTPDFTGAPNLEELILDGCKRL---------QNCT 474 (720)
Q Consensus 406 ~~L~~~~~~~~~lp~-~~-~~~~l~~L~l~~~~i~~l~~~~~~l~~~~~~~~l~~L~~L~L~~~~~l---------~~~~ 474 (720)
++|++++|.+..+|. .+ ...++++|++++|.+.... +..++.+++|++|++++|.-- ..++
T Consensus 100 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--------~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~ 171 (680)
T 1ziw_A 100 TELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTK--------LGTQVQLENLQELLLSNNKIQALKSEELDIFANS 171 (680)
T ss_dssp SEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCC--------CCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTC
T ss_pred CEEECCCCccCccChhHccccCCCCEEECCCCcccccC--------chhhcccccCCEEEccCCcccccCHHHhhccccc
Confidence 777777777766653 33 3456777777766554321 122455566666666655310 0111
Q ss_pred CCc----------ccCccchh--------------------hhHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCC--C
Q 047161 475 SLT----------TLPREIAT--------------------ESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKS--L 522 (720)
Q Consensus 475 ~L~----------~lp~~~~~--------------------~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~--L 522 (720)
+|+ .++...+. ..++..+ ..++|+.|++++|.+.+..|..+.+++. |
T Consensus 172 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l-~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L 250 (680)
T 1ziw_A 172 SLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLEL-ANTSIRNLSLSNSQLSTTSNTTFLGLKWTNL 250 (680)
T ss_dssp EESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHH-TTSCCCEEECTTSCCCEECTTTTGGGGGSCC
T ss_pred cccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHh-hhccccEEEccCCcccccChhHhhccCcCCC
Confidence 122 22211000 0000000 1245666666666655555556655543 6
Q ss_pred CEEeccCCCCCcccCcCcCCCCCCCEEeccCcccccCCccccCCcCCceEEEeecCCCCC---------CCCCccccccc
Q 047161 523 RTVNLSRCSKLENMPESLGQMESLEELDVSGTVIRQPVPSIFFPSRILKVYLFVDTRDHR---------TSSSSWHLWFP 593 (720)
Q Consensus 523 ~~L~L~~~~~l~~lp~~~~~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~---------~~~~~~~~l~~ 593 (720)
++|++++|.+.+..|..++.+++|++|++++|.+.+.++..+..+++|+.|++.++...+ +....+..+..
T Consensus 251 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~ 330 (680)
T 1ziw_A 251 TMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKC 330 (680)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTT
T ss_pred CEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCC
Confidence 666666666555555566666666666666666666555444444555555554332211 11123334444
Q ss_pred ccccccCCCCcccccCCCCCCCCCCCccc-----------------------ccEEECCCCCCccc-cccccCCCCCcee
Q 047161 594 FSLMQKGSSDSMALMLPSLSGLCSLTELN-----------------------LKKLNLRRNNFVSL-RGTINHLPKFKHL 649 (720)
Q Consensus 594 l~~l~l~~~~~~~~~~~~l~~l~~L~~L~-----------------------L~~L~Ls~n~l~~l-p~~i~~l~~L~~L 649 (720)
++.+++..+.........+.++++|+.|+ |+.|++++|.++.+ |..+..+++|+.|
T Consensus 331 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 410 (680)
T 1ziw_A 331 LEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVL 410 (680)
T ss_dssp CCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred CCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEE
Confidence 44444444443333322344444443331 34455555555543 3445555555555
Q ss_pred eccccccccccCC-----c-----------------------ccccceEeeecCc--ccccchhhccCchhHhhhhhhcc
Q 047161 650 KLDDCKRLRSLSE-----L-----------------------PSDIKKVRVHGCT--SLATISDALRSCNSATSRIFCIN 699 (720)
Q Consensus 650 ~L~~c~~L~~lp~-----l-----------------------p~~L~~L~l~~c~--~L~~lp~~~~~~~~L~~l~~~~n 699 (720)
++++|..-..+|. + .++|+.|++.+|. .+..+|..+.++++|+.|++.+|
T Consensus 411 ~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N 490 (680)
T 1ziw_A 411 DLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNN 490 (680)
T ss_dssp ECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSS
T ss_pred eCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCC
Confidence 5555542222221 1 1345555555543 23556777778888888777655
No 35
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.85 E-value=5.3e-22 Score=223.86 Aligned_cols=201 Identities=17% Similarity=0.241 Sum_probs=122.8
Q ss_pred CCcEEeccCCCCCcccCCCC-CCCCCCCEEeccCCCCCcccC---cCcCCCCCCCEEeccCcccccCCc--cccCCcCCc
Q 047161 497 GLVFLNLNDCKILVRLPSTI-NGWKSLRTVNLSRCSKLENMP---ESLGQMESLEELDVSGTVIRQPVP--SIFFPSRIL 570 (720)
Q Consensus 497 ~L~~L~Ls~n~~~~~lp~~i-~~l~~L~~L~L~~~~~l~~lp---~~~~~L~~L~~L~L~~n~l~~~~~--~~~~~~~~L 570 (720)
+|+.|++++|. +..+|..+ .++++|++|++++|.+.+.+| ..++.+++|++|++++|.+.+.++ ..+..+++|
T Consensus 311 ~L~~L~l~~n~-l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L 389 (549)
T 2z81_A 311 KVKRITVENSK-VFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNL 389 (549)
T ss_dssp TCCEEEEESSC-CCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTC
T ss_pred cceEEEeccCc-cccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCC
Confidence 34444444444 23444444 246666666666665555443 235566666666666666665542 223334666
Q ss_pred eEEEeecCCCCCCCCCcccccccccccccCCCCcccccCCCCCCCCCCCcccccEEECCCCCCccccccccCCCCCceee
Q 047161 571 KVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSLSGLCSLTELNLKKLNLRRNNFVSLRGTINHLPKFKHLK 650 (720)
Q Consensus 571 ~~L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~ 650 (720)
+.|++++|.+..++ ..+..+..++.++++.+....... .+ .+ +|+.|++++|+++.++ ..+++|++|+
T Consensus 390 ~~L~Ls~N~l~~lp-~~~~~~~~L~~L~Ls~N~l~~l~~-~~--~~-----~L~~L~Ls~N~l~~~~---~~l~~L~~L~ 457 (549)
T 2z81_A 390 TSLDISRNTFHPMP-DSCQWPEKMRFLNLSSTGIRVVKT-CI--PQ-----TLEVLDVSNNNLDSFS---LFLPRLQELY 457 (549)
T ss_dssp CEEECTTCCCCCCC-SCCCCCTTCCEEECTTSCCSCCCT-TS--CT-----TCSEEECCSSCCSCCC---CCCTTCCEEE
T ss_pred CEEECCCCCCccCC-hhhcccccccEEECCCCCcccccc-hh--cC-----CceEEECCCCChhhhc---ccCChhcEEE
Confidence 66666666665433 334455566666666554332110 01 01 3477888888887665 5789999999
Q ss_pred ccccccccccCCc--ccccceEeeecCcccccchhhccCchhHhhhhhhcc-----cch--hHHHHHhhc
Q 047161 651 LDDCKRLRSLSEL--PSDIKKVRVHGCTSLATISDALRSCNSATSRIFCIN-----CPK--LILNWLQQY 711 (720)
Q Consensus 651 L~~c~~L~~lp~l--p~~L~~L~l~~c~~L~~lp~~~~~~~~L~~l~~~~n-----c~~--l~~~w~~~~ 711 (720)
|++| .++.+|.. .++|+.|++++|.--...|..+.++++|+.+++..| ||. .+..|+.+.
T Consensus 458 Ls~N-~l~~ip~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~~l~~~l~~~ 526 (549)
T 2z81_A 458 ISRN-KLKTLPDASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKN 526 (549)
T ss_dssp CCSS-CCSSCCCGGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHHHHHHHHHHHHHC
T ss_pred CCCC-ccCcCCCcccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCccHHHHHHHHHhc
Confidence 9999 57777753 367999999998644444567899999999888766 553 356688653
No 36
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.85 E-value=4.7e-21 Score=200.74 Aligned_cols=197 Identities=22% Similarity=0.344 Sum_probs=139.1
Q ss_pred CCCCCCceeeecCCCCCCCCCCCCcccCccchhhhHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCC
Q 047161 453 FTGAPNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSK 532 (720)
Q Consensus 453 ~~~l~~L~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~ 532 (720)
+..+++|++|+|++|. +..+|.. ++.+++|++|+|++|.+ ..+|..++++++|++|++++|..
T Consensus 100 l~~l~~L~~L~L~~n~-------l~~lp~~---------~~~l~~L~~L~Ls~n~l-~~lp~~l~~l~~L~~L~L~~n~~ 162 (328)
T 4fcg_A 100 AFRLSHLQHMTIDAAG-------LMELPDT---------MQQFAGLETLTLARNPL-RALPASIASLNRLRELSIRACPE 162 (328)
T ss_dssp GGGGTTCSEEEEESSC-------CCCCCSC---------GGGGTTCSEEEEESCCC-CCCCGGGGGCTTCCEEEEEEETT
T ss_pred hhhCCCCCEEECCCCC-------ccchhHH---------HhccCCCCEEECCCCcc-ccCcHHHhcCcCCCEEECCCCCC
Confidence 4567788888888876 5667766 77888888888888874 47788888888888888888878
Q ss_pred CcccCcCcCC---------CCCCCEEeccCcccccCCccccCCcCCceEEEeecCCCCCCCCCcccccccccccccCCCC
Q 047161 533 LENMPESLGQ---------MESLEELDVSGTVIRQPVPSIFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSD 603 (720)
Q Consensus 533 l~~lp~~~~~---------L~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~ 603 (720)
.+.+|..++. +++|++|++++|.+..+|..+... ++|+.|++++|.+.++++
T Consensus 163 ~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l-~~L~~L~L~~N~l~~l~~------------------ 223 (328)
T 4fcg_A 163 LTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANL-QNLKSLKIRNSPLSALGP------------------ 223 (328)
T ss_dssp CCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGC-TTCCEEEEESSCCCCCCG------------------
T ss_pred ccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCC-CCCCEEEccCCCCCcCch------------------
Confidence 8888877654 888888888888888666554444 788888887776554322
Q ss_pred cccccCCCCCCCCCCCcccccEEECCCCCCc-cccccccCCCCCceeeccccccccccCCcc---cccceEeeecCcccc
Q 047161 604 SMALMLPSLSGLCSLTELNLKKLNLRRNNFV-SLRGTINHLPKFKHLKLDDCKRLRSLSELP---SDIKKVRVHGCTSLA 679 (720)
Q Consensus 604 ~~~~~~~~l~~l~~L~~L~L~~L~Ls~n~l~-~lp~~i~~l~~L~~L~L~~c~~L~~lp~lp---~~L~~L~l~~c~~L~ 679 (720)
.+..+++| +.|++++|++. .+|.++..+++|++|+|++|.....+|... ++|+.|++++|..++
T Consensus 224 -------~l~~l~~L-----~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~ 291 (328)
T 4fcg_A 224 -------AIHHLPKL-----EELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLS 291 (328)
T ss_dssp -------GGGGCTTC-----CEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCC
T ss_pred -------hhccCCCC-----CEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchh
Confidence 23334444 56666666554 556667777777777777776666666321 457777777777777
Q ss_pred cchhhccCchhHhhhhhh
Q 047161 680 TISDALRSCNSATSRIFC 697 (720)
Q Consensus 680 ~lp~~~~~~~~L~~l~~~ 697 (720)
.+|+++.++++|+.+.+.
T Consensus 292 ~iP~~l~~L~~L~~l~l~ 309 (328)
T 4fcg_A 292 RLPSLIAQLPANCIILVP 309 (328)
T ss_dssp CCCGGGGGSCTTCEEECC
T ss_pred hccHHHhhccCceEEeCC
Confidence 777777777777664443
No 37
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.85 E-value=1.1e-20 Score=213.66 Aligned_cols=127 Identities=13% Similarity=0.075 Sum_probs=77.5
Q ss_pred CCceEEEeecCCCCCCCCCcccccccccccccCCCCccccc--CCCCCCCCCCCcccccEEECCCCCCcc-ccc-cccCC
Q 047161 568 RILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALM--LPSLSGLCSLTELNLKKLNLRRNNFVS-LRG-TINHL 643 (720)
Q Consensus 568 ~~L~~L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~--~~~l~~l~~L~~L~L~~L~Ls~n~l~~-lp~-~i~~l 643 (720)
++|+.|++++|.+.+..+..+..+..++.+++..+...... ...+.++++| +.|++++|.++. +|. .+..+
T Consensus 353 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L-----~~L~l~~N~l~~~~~~~~~~~l 427 (562)
T 3a79_B 353 SSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSL-----ETLDVSLNSLNSHAYDRTCAWA 427 (562)
T ss_dssp CCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTC-----CEEECTTSCCBSCCSSCCCCCC
T ss_pred CCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCC-----CEEECCCCcCCCccChhhhcCc
Confidence 34444444444444444444444444444444444333211 1123334433 667777777775 664 35677
Q ss_pred CCCceeeccccccccccC-CcccccceEeeecCcccccchhhccCchhHhhhhhhccc
Q 047161 644 PKFKHLKLDDCKRLRSLS-ELPSDIKKVRVHGCTSLATISDALRSCNSATSRIFCINC 700 (720)
Q Consensus 644 ~~L~~L~L~~c~~L~~lp-~lp~~L~~L~l~~c~~L~~lp~~~~~~~~L~~l~~~~nc 700 (720)
++|+.|++++|..-..+| .+|++|+.|++++| .++.+|..+.++++|+.|++.+|.
T Consensus 428 ~~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N-~l~~ip~~~~~l~~L~~L~L~~N~ 484 (562)
T 3a79_B 428 ESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNN-RIMSIPKDVTHLQALQELNVASNQ 484 (562)
T ss_dssp TTCCEEECCSSCCCGGGGSSCCTTCSEEECCSS-CCCCCCTTTTSSCCCSEEECCSSC
T ss_pred ccCCEEECCCCCCCcchhhhhcCcCCEEECCCC-cCcccChhhcCCCCCCEEECCCCC
Confidence 788888888775333333 34578999999998 688999888899999998887764
No 38
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.85 E-value=1e-20 Score=218.99 Aligned_cols=201 Identities=19% Similarity=0.207 Sum_probs=158.7
Q ss_pred hccCCCCcEEeccCCCCCcccC-CCCCCCCCCCEEeccCCCCCcccCcCcCCCCCCCEEeccCcccc--cCCccccCCcC
Q 047161 492 IELLTGLVFLNLNDCKILVRLP-STINGWKSLRTVNLSRCSKLENMPESLGQMESLEELDVSGTVIR--QPVPSIFFPSR 568 (720)
Q Consensus 492 i~~l~~L~~L~Ls~n~~~~~lp-~~i~~l~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~L~~n~l~--~~~~~~~~~~~ 568 (720)
+..+++|++|++++|.+.+.+| ..+.++++|++|++++|.+.+..|..+..+++|+.|++++|.+. +..|..+..++
T Consensus 401 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~ 480 (680)
T 1ziw_A 401 FSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLR 480 (680)
T ss_dssp TTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCT
T ss_pred hhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCC
Confidence 7778888899998888666666 56788888999999888766666777888889999999988876 34455555568
Q ss_pred CceEEEeecCCCCCCCCCcccccccccccccCCCCcccccC--------CCCCCCCCCCcccccEEECCCCCCccccc-c
Q 047161 569 ILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALML--------PSLSGLCSLTELNLKKLNLRRNNFVSLRG-T 639 (720)
Q Consensus 569 ~L~~L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~--------~~l~~l~~L~~L~L~~L~Ls~n~l~~lp~-~ 639 (720)
+|+.|++++|.+..+++..+..+..++.++++.+....... ..+.++++| +.|+|++|.++.+|. .
T Consensus 481 ~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L-----~~L~L~~N~l~~i~~~~ 555 (680)
T 1ziw_A 481 NLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHL-----HILNLESNGFDEIPVEV 555 (680)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTC-----CEEECCSSCCCCCCTTT
T ss_pred CCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCC-----CEEECCCCCCCCCCHHH
Confidence 99999999999999988889999999999999887765421 125666665 788999999999985 5
Q ss_pred ccCCCCCceeeccccccccccCCcc----cccceEeeecCcccccch-hhcc-CchhHhhhhhhcc
Q 047161 640 INHLPKFKHLKLDDCKRLRSLSELP----SDIKKVRVHGCTSLATIS-DALR-SCNSATSRIFCIN 699 (720)
Q Consensus 640 i~~l~~L~~L~L~~c~~L~~lp~lp----~~L~~L~l~~c~~L~~lp-~~~~-~~~~L~~l~~~~n 699 (720)
+.++++|+.|+|++| .++.+|.-. ++|+.|++++|. ++.++ ..+. .+++|+.+++..|
T Consensus 556 ~~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~~~L~~l~l~~N 619 (680)
T 1ziw_A 556 FKDLFELKIIDLGLN-NLNTLPASVFNNQVSLKSLNLQKNL-ITSVEKKVFGPAFRNLTELDMRFN 619 (680)
T ss_dssp TTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECTTSC-CCBCCHHHHHHHHTTCSEEECTTC
T ss_pred cccccCcceeECCCC-CCCcCCHhHhCCCCCCCEEECCCCc-CCccChhHhcccccccCEEEccCC
Confidence 799999999999998 577776421 679999999984 66666 4454 5788888777665
No 39
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.85 E-value=3.1e-21 Score=202.14 Aligned_cols=210 Identities=21% Similarity=0.316 Sum_probs=170.6
Q ss_pred CCCCceeeecCCCCCCCCCCCCcccCccchhhhHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCCCc
Q 047161 455 GAPNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLE 534 (720)
Q Consensus 455 ~l~~L~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~l~ 534 (720)
..++++.|+|++|. +..+|.. ++.+++|++|+|++|.+. .+|..++++++|++|+|++|.+.
T Consensus 79 ~~~~l~~L~L~~n~-------l~~lp~~---------l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~- 140 (328)
T 4fcg_A 79 TQPGRVALELRSVP-------LPQFPDQ---------AFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR- 140 (328)
T ss_dssp TSTTCCEEEEESSC-------CSSCCSC---------GGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-
T ss_pred cccceeEEEccCCC-------chhcChh---------hhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-
Confidence 35689999999988 6788887 888999999999999955 89999999999999999999755
Q ss_pred ccCcCcCCCCCCCEEeccCcccccCCccccC---------CcCCceEEEeecCCCCCCCCCcccccccccccccCCCCcc
Q 047161 535 NMPESLGQMESLEELDVSGTVIRQPVPSIFF---------PSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSM 605 (720)
Q Consensus 535 ~lp~~~~~L~~L~~L~L~~n~l~~~~~~~~~---------~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~ 605 (720)
.+|..++++++|++|++++|.+.+..|..+. .+++|+.|++++|.+..++
T Consensus 141 ~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp--------------------- 199 (328)
T 4fcg_A 141 ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLP--------------------- 199 (328)
T ss_dssp CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCC---------------------
T ss_pred cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcch---------------------
Confidence 8899999999999999999877765554432 2488888888776544221
Q ss_pred cccCCCCCCCCCCCcccccEEECCCCCCccccccccCCCCCceeeccccccccccCCcc---cccceEeeecCcccccch
Q 047161 606 ALMLPSLSGLCSLTELNLKKLNLRRNNFVSLRGTINHLPKFKHLKLDDCKRLRSLSELP---SDIKKVRVHGCTSLATIS 682 (720)
Q Consensus 606 ~~~~~~l~~l~~L~~L~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~lp---~~L~~L~l~~c~~L~~lp 682 (720)
..++.+++| +.|+|++|.++.+|..+..+++|+.|++++|.....+|... ++|+.|++++|..++.+|
T Consensus 200 ----~~l~~l~~L-----~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p 270 (328)
T 4fcg_A 200 ----ASIANLQNL-----KSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLP 270 (328)
T ss_dssp ----GGGGGCTTC-----CEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCC
T ss_pred ----HhhcCCCCC-----CEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcc
Confidence 124556655 78899999999999999999999999999998888887532 679999999999999999
Q ss_pred hhccCchhHhhhhhhcc-cchhHHHHHhhcc
Q 047161 683 DALRSCNSATSRIFCIN-CPKLILNWLQQYS 712 (720)
Q Consensus 683 ~~~~~~~~L~~l~~~~n-c~~l~~~w~~~~~ 712 (720)
..+.++++|+.|++.+| ....+|.|+...+
T Consensus 271 ~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~ 301 (328)
T 4fcg_A 271 LDIHRLTQLEKLDLRGCVNLSRLPSLIAQLP 301 (328)
T ss_dssp TTGGGCTTCCEEECTTCTTCCCCCGGGGGSC
T ss_pred hhhhcCCCCCEEeCCCCCchhhccHHHhhcc
Confidence 99999999999777753 2233566665433
No 40
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.85 E-value=2e-21 Score=202.36 Aligned_cols=245 Identities=17% Similarity=0.211 Sum_probs=179.5
Q ss_pred CCcceEEEeccccCC------cccCccccceEEEecC-CCCC-CCCCCCC-CCcceEeeCCCCchhHHhhhccCccccCC
Q 047161 382 TNLRLLKIHNLQLPA------GLESLSDELRLLQWHG-YPLK-SLPSSME-MDKTLECNMCYRRIEQFWKGIKNLIRTPD 452 (720)
Q Consensus 382 ~~L~~L~l~~~~l~~------~~~~l~~~l~~L~~~~-~~~~-~lp~~~~-~~~l~~L~l~~~~i~~l~~~~~~l~~~~~ 452 (720)
.+++.|+++++.+.. .+..+ ..++.|++++ |.+. .+|..+. ..++++|++++|.+... .+..
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l-~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~--------~p~~ 120 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANL-PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGA--------IPDF 120 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGC-TTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEE--------CCGG
T ss_pred ceEEEEECCCCCccCCcccChhHhCC-CCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCc--------CCHH
Confidence 456677777765542 23332 3467777763 4443 5665553 56677777777665421 1223
Q ss_pred CCCCCCceeeecCCCCCCCCCCCCc-ccCccchhhhHHHHhccCCCCcEEeccCCCCCcccCCCCCCCC-CCCEEeccCC
Q 047161 453 FTGAPNLEELILDGCKRLQNCTSLT-TLPREIATESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWK-SLRTVNLSRC 530 (720)
Q Consensus 453 ~~~l~~L~~L~L~~~~~l~~~~~L~-~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~-~L~~L~L~~~ 530 (720)
|..+++|++|++++|. +. .+|.. ++.+++|++|++++|.+.+.+|..+++++ +|++|++++|
T Consensus 121 ~~~l~~L~~L~Ls~N~-------l~~~~p~~---------~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N 184 (313)
T 1ogq_A 121 LSQIKTLVTLDFSYNA-------LSGTLPPS---------ISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRN 184 (313)
T ss_dssp GGGCTTCCEEECCSSE-------EESCCCGG---------GGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSS
T ss_pred HhCCCCCCEEeCCCCc-------cCCcCChH---------HhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCC
Confidence 7788889999998886 34 45655 78888999999999887778888888887 8999999988
Q ss_pred CCCcccCcCcCCCCCCCEEeccCcccccCCccccCCcCCceEEEeecCCCCCCCCCcccccccccccccCCCCcccccCC
Q 047161 531 SKLENMPESLGQMESLEELDVSGTVIRQPVPSIFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLP 610 (720)
Q Consensus 531 ~~l~~lp~~~~~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~ 610 (720)
.+.+.+|..+..++ |++|++++|.+.+.++..+..+++|+.|++++|.+.+..+. +..+..++.+++..+...+..+.
T Consensus 185 ~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~ 262 (313)
T 1ogq_A 185 RLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQ 262 (313)
T ss_dssp EEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCG
T ss_pred eeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCCh
Confidence 87778888888887 99999999988887777777778899999988888765554 66778888888888877655555
Q ss_pred CCCCCCCCCcccccEEECCCCCCc-cccccccCCCCCceeeccccccccc
Q 047161 611 SLSGLCSLTELNLKKLNLRRNNFV-SLRGTINHLPKFKHLKLDDCKRLRS 659 (720)
Q Consensus 611 ~l~~l~~L~~L~L~~L~Ls~n~l~-~lp~~i~~l~~L~~L~L~~c~~L~~ 659 (720)
.+..+++| +.|+|++|.++ .+|.. ..+++|+.|++++|+.+..
T Consensus 263 ~l~~l~~L-----~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 263 GLTQLKFL-----HSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp GGGGCTTC-----CEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEES
T ss_pred HHhcCcCC-----CEEECcCCcccccCCCC-ccccccChHHhcCCCCccC
Confidence 57777766 67888888888 56654 7788888888888875544
No 41
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.85 E-value=1.3e-20 Score=214.22 Aligned_cols=231 Identities=19% Similarity=0.228 Sum_probs=168.5
Q ss_pred cCCCCCccccchhHHHHHHhhhccCCCeEEEEEecCCCccccch--------------h------------cHHHHHHHH
Q 047161 124 LGILDDLVEMNSRLKKLRLLLDAESRDVRMIGICGMGGVELSEK--------------D------------GLIALQKQL 177 (720)
Q Consensus 124 ~~~~~~~vG~~~~~~~i~~~L~~~~~~~~vi~I~G~gGi~vs~~--------------~------------~~~~~~~~i 177 (720)
+.....+|||+.++++|.+.|....++.++|+|+||||++.+.- | +...+...+
T Consensus 120 P~~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~~~~~~~~~l 199 (591)
T 1z6t_A 120 PQRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQDKSGLLMKL 199 (591)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESCCHHHHHHHH
T ss_pred CCCCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCCchHHHHHHH
Confidence 34567899999999999999976566789999999999932211 1 111222222
Q ss_pred H---Hhhhhc-c---cceeccchhhHHHHHHHHhc--CCeEEEEecCCcHHHHHHHhccCCCCCCCCeEEEEcCChhhhh
Q 047161 178 L---SKTLME-I---DIEIRNDFDGIKMIKRELRR--RNVLVVIDDAVHIRQLNRLAGKHSWFGSGSRIIIPTRDEHLLR 248 (720)
Q Consensus 178 l---~~~~~~-~---~~~~~~~~~~~~~l~~~l~~--kr~LlVLDdv~~~~~~~~l~~~~~~~~~gsrIivTTR~~~v~~ 248 (720)
. .. +.. . .....+.+.....++..+.+ +++||||||||+..+++. +++|++||||||+..++.
T Consensus 200 ~~l~~~-l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~-------l~~~~~ilvTsR~~~~~~ 271 (591)
T 1z6t_A 200 QNLCTR-LDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKA-------FDSQCQILLTTRDKSVTD 271 (591)
T ss_dssp HHHHHH-HCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHT-------TCSSCEEEEEESCGGGGT
T ss_pred HHHHHH-hccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHH-------hcCCCeEEEECCCcHHHH
Confidence 2 12 111 0 11223445566778888876 799999999999877654 367999999999999987
Q ss_pred hccccceEec---CCCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHhCCCchHHHHhhhhccCCCHHHHHHHHhhhhc
Q 047161 249 TLRVDGVYKV---EKLDDDEALELFNKRAFDGQPSKDYVELIKRIVKYADGLPFALETLGSVLFGRSVDGWRSTLERLNK 325 (720)
Q Consensus 249 ~~~~~~~~~l---~~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~i~~~c~glPLai~~~g~~l~~k~~~~W~~~l~~l~~ 325 (720)
.++ ...|++ ++|+.+||++||...++.. .....+.+.+|+++|+|+|||++.+|+.++.+. .+|+.+++.+..
T Consensus 272 ~~~-~~~~~v~~l~~L~~~ea~~L~~~~~~~~--~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~-~~w~~~l~~l~~ 347 (591)
T 1z6t_A 272 SVM-GPKYVVPVESSLGKEKGLEILSLFVNMK--KADLPEQAHSIIKECKGSPLVVSLIGALLRDFP-NRWEYYLKQLQN 347 (591)
T ss_dssp TCC-SCEEEEECCSSCCHHHHHHHHHHHHTSC--GGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST-TCHHHHHHHHHS
T ss_pred hcC-CCceEeecCCCCCHHHHHHHHHHHhCCC--cccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc-hhHHHHHHHHHH
Confidence 654 345555 5899999999999999763 222345688999999999999999999998753 479998887764
Q ss_pred CC-----------chhHHHHHHhhhcCCchh----hhhhhcCCCCCC----Cccccchhh
Q 047161 326 HS-----------ADEILDVLEISFNGLKGR----IEIMRKSPEEPG----KCSRLWKVA 366 (720)
Q Consensus 326 ~~-----------~~~il~~L~lSyn~L~~~----~~~~~~~p~~~~----~l~~Lw~~~ 366 (720)
.. ...+..++..||+.|+.. +.+++.||.+.. .+..+|..+
T Consensus 348 ~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~ 407 (591)
T 1z6t_A 348 KQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDME 407 (591)
T ss_dssp CCCCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCC
T ss_pred hHHHHhhhccccchHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccC
Confidence 32 257899999999999987 778888987543 356667544
No 42
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.85 E-value=1.1e-20 Score=211.72 Aligned_cols=288 Identities=16% Similarity=0.124 Sum_probs=175.9
Q ss_pred CCcceEEEeccccCCc----ccCccccceEEEecCCCCCCC-CCCC-CCCcceEeeCCCCchhHHhhhccCccccCCCCC
Q 047161 382 TNLRLLKIHNLQLPAG----LESLSDELRLLQWHGYPLKSL-PSSM-EMDKTLECNMCYRRIEQFWKGIKNLIRTPDFTG 455 (720)
Q Consensus 382 ~~L~~L~l~~~~l~~~----~~~l~~~l~~L~~~~~~~~~l-p~~~-~~~~l~~L~l~~~~i~~l~~~~~~l~~~~~~~~ 455 (720)
++++.|++++|.+... +..+ ..++.|++++|.+..+ |..+ ...++++|++++|++..+ |.. .
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l----------p~~-~ 88 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSL-SKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKI----------SCH-P 88 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTC-TTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEE----------ECC-C
T ss_pred ccccEEECCCCcccccChhhcccc-ccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeec----------Ccc-c
Confidence 5666677766665322 2222 3466777777766655 3333 345666677666665432 223 5
Q ss_pred CCCceeeecCCCCCCCCCCCCcc--cCccchhhhHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCC--CEEeccCCC
Q 047161 456 APNLEELILDGCKRLQNCTSLTT--LPREIATESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSL--RTVNLSRCS 531 (720)
Q Consensus 456 l~~L~~L~L~~~~~l~~~~~L~~--lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L--~~L~L~~~~ 531 (720)
+++|++|+|++|. +.. +|.. ++.+++|++|++++|.+.+ ..++.+++| ++|++++|.
T Consensus 89 l~~L~~L~L~~N~-------l~~~~~p~~---------~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~ 149 (520)
T 2z7x_B 89 TVNLKHLDLSFNA-------FDALPICKE---------FGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGE 149 (520)
T ss_dssp CCCCSEEECCSSC-------CSSCCCCGG---------GGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECT
T ss_pred cCCccEEeccCCc-------cccccchhh---------hccCCcceEEEecCcccch---hhccccccceeeEEEeeccc
Confidence 6677777777766 333 3344 7778888888888887543 346667777 888888877
Q ss_pred C--CcccCcCcCCCC-----------------------------------------------------------------
Q 047161 532 K--LENMPESLGQME----------------------------------------------------------------- 544 (720)
Q Consensus 532 ~--l~~lp~~~~~L~----------------------------------------------------------------- 544 (720)
+ .+..|..+..+.
T Consensus 150 l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~ 229 (520)
T 2z7x_B 150 TYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNN 229 (520)
T ss_dssp TTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEE
T ss_pred ccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccc
Confidence 6 555565555533
Q ss_pred ------------------CCCEEeccCcccccCCcccc-----CCcCCceEEEeecCCCCCCCC----------------
Q 047161 545 ------------------SLEELDVSGTVIRQPVPSIF-----FPSRILKVYLFVDTRDHRTSS---------------- 585 (720)
Q Consensus 545 ------------------~L~~L~L~~n~l~~~~~~~~-----~~~~~L~~L~l~~~~~~~~~~---------------- 585 (720)
+|++|++++|.+.+..|... ..+++|+.+++..|.+ .++.
T Consensus 230 ~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~ 308 (520)
T 2z7x_B 230 IETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFT 308 (520)
T ss_dssp EEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEE
T ss_pred cccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce-ecchhhhhcccccCceeEEE
Confidence 67777777777774333322 2234444444444443 1110
Q ss_pred --------Cc-ccccccccccccCCCCcccccCCCCCCCCCCCccc---------------------ccEEECCCCCCcc
Q 047161 586 --------SS-WHLWFPFSLMQKGSSDSMALMLPSLSGLCSLTELN---------------------LKKLNLRRNNFVS 635 (720)
Q Consensus 586 --------~~-~~~l~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~---------------------L~~L~Ls~n~l~~ 635 (720)
.. +..+..++.++++.+......+..+..+++|+.|+ |+.|++++|.++.
T Consensus 309 l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~ 388 (520)
T 2z7x_B 309 VSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSY 388 (520)
T ss_dssp EESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBC
T ss_pred cCCCccccccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCc
Confidence 00 14555666666666665554445566666664442 3667777777775
Q ss_pred -cccc-ccCCCCCceeeccccccccccC-CcccccceEeeecCcccccchhhccCchhHhhhhhhcccch
Q 047161 636 -LRGT-INHLPKFKHLKLDDCKRLRSLS-ELPSDIKKVRVHGCTSLATISDALRSCNSATSRIFCINCPK 702 (720)
Q Consensus 636 -lp~~-i~~l~~L~~L~L~~c~~L~~lp-~lp~~L~~L~l~~c~~L~~lp~~~~~~~~L~~l~~~~nc~~ 702 (720)
+|.. +..+++|+.|++++|..-..+| .+|++|+.|++++| .++.+|..+.++++|+.+++.+|.-.
T Consensus 389 ~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~L~~N~l~ 457 (520)
T 2z7x_B 389 DEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSN-KIKSIPKQVVKLEALQELNVASNQLK 457 (520)
T ss_dssp CGGGCSCCCCTTCCEEECCSSCCCGGGGGSCCTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred ccccchhccCccCCEEECcCCCCCcchhhhhcccCCEEECCCC-cccccchhhhcCCCCCEEECCCCcCC
Confidence 6643 5667777777777775333343 34568999999887 46789988889999999888766433
No 43
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.84 E-value=3.1e-21 Score=204.67 Aligned_cols=273 Identities=12% Similarity=0.158 Sum_probs=207.7
Q ss_pred ccCCcceEEEeccccCCcccCccccceEEEecCCCCCCCCC-CC-CCCcceEeeCCCCchhHHhhhccCccccCCCCCCC
Q 047161 380 KMTNLRLLKIHNLQLPAGLESLSDELRLLQWHGYPLKSLPS-SM-EMDKTLECNMCYRRIEQFWKGIKNLIRTPDFTGAP 457 (720)
Q Consensus 380 ~l~~L~~L~l~~~~l~~~~~~l~~~l~~L~~~~~~~~~lp~-~~-~~~~l~~L~l~~~~i~~l~~~~~~l~~~~~~~~l~ 457 (720)
.+.....++.+++.+..-...++..++.|++++|.+..+|. .+ ...+++.|++++|.+..+. ...|..++
T Consensus 29 ~C~~~~~c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~--------~~~~~~l~ 100 (353)
T 2z80_A 29 SCDRNGICKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIE--------EDSFSSLG 100 (353)
T ss_dssp EECTTSEEECCSTTCSSCCTTCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEEC--------TTTTTTCT
T ss_pred CCCCCeEeeCCCCCcccccccccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccC--------HhhcCCCC
Confidence 34445567777777655444556679999999999988876 33 4678889999888776532 12488899
Q ss_pred CceeeecCCCCCCCCCCCCcccCccchhhhHHHHhccCCCCcEEeccCCCCCcccCC--CCCCCCCCCEEeccCCCCCcc
Q 047161 458 NLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILVRLPS--TINGWKSLRTVNLSRCSKLEN 535 (720)
Q Consensus 458 ~L~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~--~i~~l~~L~~L~L~~~~~l~~ 535 (720)
+|++|++++|. +..+|... ++.+++|++|++++|. +..+|. .++++++|++|++++|...+.
T Consensus 101 ~L~~L~Ls~n~-------l~~~~~~~--------~~~l~~L~~L~L~~n~-l~~l~~~~~~~~l~~L~~L~l~~n~~~~~ 164 (353)
T 2z80_A 101 SLEHLDLSYNY-------LSNLSSSW--------FKPLSSLTFLNLLGNP-YKTLGETSLFSHLTKLQILRVGNMDTFTK 164 (353)
T ss_dssp TCCEEECCSSC-------CSSCCHHH--------HTTCTTCSEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCE
T ss_pred CCCEEECCCCc-------CCcCCHhH--------hCCCccCCEEECCCCC-CcccCchhhhccCCCCcEEECCCCccccc
Confidence 99999999987 56666543 7789999999999998 456766 788999999999999854555
Q ss_pred c-CcCcCCCCCCCEEeccCcccccCCccccCCcCCceEEEeecCCCCCCCCCcccccccccccccCCCCcccccCCCC--
Q 047161 536 M-PESLGQMESLEELDVSGTVIRQPVPSIFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSL-- 612 (720)
Q Consensus 536 l-p~~~~~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~l-- 612 (720)
+ |..++++++|++|++++|.+.+.++..+..+++|+.|++++|.+..++...+..+..++.+++..+.........+
T Consensus 165 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~ 244 (353)
T 2z80_A 165 IQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELST 244 (353)
T ss_dssp ECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC----
T ss_pred cCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCcccccccccccc
Confidence 5 5678899999999999999998877777667899999999998877666666677888888888887666544432
Q ss_pred -CCCCCCCcccccEEECCCCCCccccccccCCCCCceeeccccccccccCCc----ccccceEeeecCcc
Q 047161 613 -SGLCSLTELNLKKLNLRRNNFVSLRGTINHLPKFKHLKLDDCKRLRSLSEL----PSDIKKVRVHGCTS 677 (720)
Q Consensus 613 -~~l~~L~~L~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~l----p~~L~~L~l~~c~~ 677 (720)
.....++.++|+.+.++++.+..+|.++..+++|+.|++++| .++.+|.- .++|++|++++++-
T Consensus 245 ~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N~~ 313 (353)
T 2z80_A 245 GETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRN-QLKSVPDGIFDRLTSLQKIWLHTNPW 313 (353)
T ss_dssp --CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred ccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCC-CCCccCHHHHhcCCCCCEEEeeCCCc
Confidence 345567667777777777777788988999999999999998 46667641 15688888888763
No 44
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.84 E-value=6.8e-21 Score=210.01 Aligned_cols=293 Identities=17% Similarity=0.215 Sum_probs=215.5
Q ss_pred cchhccCCcceEEEeccccCCc--ccCccccceEEEecCCCCCCCCCCCCCCcceEeeCCCCchhHHhhhccCccccCCC
Q 047161 376 TAFLKMTNLRLLKIHNLQLPAG--LESLSDELRLLQWHGYPLKSLPSSMEMDKTLECNMCYRRIEQFWKGIKNLIRTPDF 453 (720)
Q Consensus 376 ~~~~~l~~L~~L~l~~~~l~~~--~~~l~~~l~~L~~~~~~~~~lp~~~~~~~l~~L~l~~~~i~~l~~~~~~l~~~~~~ 453 (720)
+.+..+++|+.|++++|.+... +..+ ..++.|++++|.+..++......++++|+++++.+..+ +.+
T Consensus 62 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~----------~~~ 130 (466)
T 1o6v_A 62 DGVEYLNNLTQINFSNNQLTDITPLKNL-TKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDI----------DPL 130 (466)
T ss_dssp TTGGGCTTCCEEECCSSCCCCCGGGTTC-TTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCC----------GGG
T ss_pred cchhhhcCCCEEECCCCccCCchhhhcc-ccCCEEECCCCccccChhhcCCCCCCEEECCCCCCCCC----------hHH
Confidence 3567889999999999977432 3333 56999999999999888744578899999998876543 347
Q ss_pred CCCCCceeeecCCCC-----CCCCCCCCcccCccchhhhHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEecc
Q 047161 454 TGAPNLEELILDGCK-----RLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLS 528 (720)
Q Consensus 454 ~~l~~L~~L~L~~~~-----~l~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~ 528 (720)
..+++|++|++++|. .+..+++|+.+.-......++ .++.+++|++|++++|.+ ..++ .+..+++|++|+++
T Consensus 131 ~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~l~~L~~L~l~~n~l-~~~~-~l~~l~~L~~L~l~ 207 (466)
T 1o6v_A 131 KNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLK-PLANLTTLERLDISSNKV-SDIS-VLAKLTNLESLIAT 207 (466)
T ss_dssp TTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCG-GGTTCTTCCEEECCSSCC-CCCG-GGGGCTTCSEEECC
T ss_pred cCCCCCCEEECCCCccCCChhhccCCcccEeecCCcccCch-hhccCCCCCEEECcCCcC-CCCh-hhccCCCCCEEEec
Confidence 888899999998885 223344444332111001111 177888999999999884 4444 47888999999999
Q ss_pred CCCCCcccCcCcCCCCCCCEEeccCcccccCCccccCCcCCceEEEeecCCCCCCCCCcccccccccccccCCCCccccc
Q 047161 529 RCSKLENMPESLGQMESLEELDVSGTVIRQPVPSIFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALM 608 (720)
Q Consensus 529 ~~~~l~~lp~~~~~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~ 608 (720)
+|.+.+..| ++.+++|++|++++|.+.+.+ .+ ..+++|+.|++++|.+....+ +..+..++.+.+..+......
T Consensus 208 ~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~-~l-~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~ 281 (466)
T 1o6v_A 208 NNQISDITP--LGILTNLDELSLNGNQLKDIG-TL-ASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNIS 281 (466)
T ss_dssp SSCCCCCGG--GGGCTTCCEEECCSSCCCCCG-GG-GGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCG
T ss_pred CCccccccc--ccccCCCCEEECCCCCcccch-hh-hcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCccc
Confidence 987655444 778889999999999888763 33 334889999999988877655 778888888888887665432
Q ss_pred CCCCCCCCCCCcccccEEECCCCCCccccccccCCCCCceeeccccccccccCCcc--cccceEeeecCcccccchhhcc
Q 047161 609 LPSLSGLCSLTELNLKKLNLRRNNFVSLRGTINHLPKFKHLKLDDCKRLRSLSELP--SDIKKVRVHGCTSLATISDALR 686 (720)
Q Consensus 609 ~~~l~~l~~L~~L~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~lp--~~L~~L~l~~c~~L~~lp~~~~ 686 (720)
.+..+++| +.|++++|.++.++. +..+++|+.|++++|+ +..++.+. ++|+.|++++|. +..++ .+.
T Consensus 282 --~~~~l~~L-----~~L~L~~n~l~~~~~-~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~l~~n~-l~~~~-~l~ 350 (466)
T 1o6v_A 282 --PLAGLTAL-----TNLELNENQLEDISP-ISNLKNLTYLTLYFNN-ISDISPVSSLTKLQRLFFYNNK-VSDVS-SLA 350 (466)
T ss_dssp --GGTTCTTC-----SEEECCSSCCSCCGG-GGGCTTCSEEECCSSC-CSCCGGGGGCTTCCEEECCSSC-CCCCG-GGT
T ss_pred --cccCCCcc-----CeEEcCCCcccCchh-hcCCCCCCEEECcCCc-CCCchhhccCccCCEeECCCCc-cCCch-hhc
Confidence 26666665 788899999998875 7889999999999995 54444332 679999999984 66664 678
Q ss_pred CchhHhhhhhhcc
Q 047161 687 SCNSATSRIFCIN 699 (720)
Q Consensus 687 ~~~~L~~l~~~~n 699 (720)
++++|+.+.+.+|
T Consensus 351 ~l~~L~~L~l~~n 363 (466)
T 1o6v_A 351 NLTNINWLSAGHN 363 (466)
T ss_dssp TCTTCCEEECCSS
T ss_pred cCCCCCEEeCCCC
Confidence 8999999777654
No 45
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.84 E-value=5.3e-20 Score=189.02 Aligned_cols=221 Identities=19% Similarity=0.202 Sum_probs=170.9
Q ss_pred eEEEecCCCCCCCCCCCCCCcceEeeCCCCchhHHhhhccCccccCCCCCCCCceeeecCCCCCCCCCCCCcccCccchh
Q 047161 406 RLLQWHGYPLKSLPSSMEMDKTLECNMCYRRIEQFWKGIKNLIRTPDFTGAPNLEELILDGCKRLQNCTSLTTLPREIAT 485 (720)
Q Consensus 406 ~~L~~~~~~~~~lp~~~~~~~l~~L~l~~~~i~~l~~~~~~l~~~~~~~~l~~L~~L~L~~~~~l~~~~~L~~lp~~~~~ 485 (720)
+.++..++.+..+|..+ ..++++|+++++.+..+.. ..|..+++|++|++++|. +..++...
T Consensus 14 ~~~~c~~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~--------~~~~~~~~L~~L~l~~n~-------l~~~~~~~-- 75 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI-PAASQRIFLHGNRISHVPA--------ASFRACRNLTILWLHSNV-------LARIDAAA-- 75 (285)
T ss_dssp CEEECCSSCCSSCCTTC-CTTCSEEECTTSCCCEECT--------TTTTTCTTCCEEECCSSC-------CCEECTTT--
T ss_pred eEEEcCcCCcccCCcCC-CCCceEEEeeCCcCCccCH--------HHcccCCCCCEEECCCCc-------cceeCHhh--
Confidence 45666677777777654 3567777777776654321 237788899999999886 45553322
Q ss_pred hhHHHHhccCCCCcEEeccCCCCCccc-CCCCCCCCCCCEEeccCCCCCcccCcCcCCCCCCCEEeccCcccccCCcccc
Q 047161 486 ESLQKLIELLTGLVFLNLNDCKILVRL-PSTINGWKSLRTVNLSRCSKLENMPESLGQMESLEELDVSGTVIRQPVPSIF 564 (720)
Q Consensus 486 ~~l~~~i~~l~~L~~L~Ls~n~~~~~l-p~~i~~l~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~L~~n~l~~~~~~~~ 564 (720)
++.+++|++|++++|..++.+ |..+.++++|++|++++|.+.+..|..+.++++|++|++++|.+.+.++..+
T Consensus 76 ------~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 149 (285)
T 1ozn_A 76 ------FTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTF 149 (285)
T ss_dssp ------TTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred ------cCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHh
Confidence 778899999999998734444 7788889999999999987776667778889999999999999988888766
Q ss_pred CCcCCceEEEeecCCCCCCCCCcccccccccccccCCCCcccccCCCCCCCCCCCcccccEEECCCCCCcccc-ccccCC
Q 047161 565 FPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSLSGLCSLTELNLKKLNLRRNNFVSLR-GTINHL 643 (720)
Q Consensus 565 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~L~Ls~n~l~~lp-~~i~~l 643 (720)
..+++|+.|++++|.+..+++..+..+..++.+++..+.........+..+++| +.|++++|.++.+| ..+..+
T Consensus 150 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-----~~L~l~~n~l~~~~~~~~~~l 224 (285)
T 1ozn_A 150 RDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRL-----MTLYLFANNLSALPTEALAPL 224 (285)
T ss_dssp TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTC-----CEEECCSSCCSCCCHHHHTTC
T ss_pred ccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccc-----cEeeCCCCcCCcCCHHHcccC
Confidence 666899999999888888877778888888888888887766666667777776 77888899888877 457888
Q ss_pred CCCceeeccccc
Q 047161 644 PKFKHLKLDDCK 655 (720)
Q Consensus 644 ~~L~~L~L~~c~ 655 (720)
++|+.|++++|+
T Consensus 225 ~~L~~L~l~~N~ 236 (285)
T 1ozn_A 225 RALQYLRLNDNP 236 (285)
T ss_dssp TTCCEEECCSSC
T ss_pred cccCEEeccCCC
Confidence 999999999886
No 46
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.84 E-value=6e-21 Score=225.80 Aligned_cols=307 Identities=15% Similarity=0.126 Sum_probs=194.2
Q ss_pred HHHHHhhhcCCchhhhhhhcCCCCCCCccccchhhhhHHHHhcC--cchhccCCcceEEEeccccCCc------ccCccc
Q 047161 332 LDVLEISFNGLKGRIEIMRKSPEEPGKCSRLWKVADVSHVLRRN--TAFLKMTNLRLLKIHNLQLPAG------LESLSD 403 (720)
Q Consensus 332 l~~L~lSyn~L~~~~~~~~~~p~~~~~l~~Lw~~~~~~~~~~~~--~~~~~l~~L~~L~l~~~~l~~~------~~~l~~ 403 (720)
++.|++|+|...... .|..+..+.+|..++...+.+... ..|.++.+|+.|++++|.+... +.. ..
T Consensus 50 L~~LdLs~n~~~~~i-----~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~-L~ 123 (844)
T 3j0a_A 50 LQLLELGSQYTPLTI-----DKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRN-LK 123 (844)
T ss_dssp CSEEEECTTCCCCEE-----CTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSS-CS
T ss_pred CeEEeCCCCCCcccc-----CHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccc-cC
Confidence 455666666432221 144555666666665555544432 3566677777777766655321 222 23
Q ss_pred cceEEEecCCCCCCCCC--CC-CCCcceEeeCCCCchhHHhhhc------c----------Ccc--ccCCCCCCC-----
Q 047161 404 ELRLLQWHGYPLKSLPS--SM-EMDKTLECNMCYRRIEQFWKGI------K----------NLI--RTPDFTGAP----- 457 (720)
Q Consensus 404 ~l~~L~~~~~~~~~lp~--~~-~~~~l~~L~l~~~~i~~l~~~~------~----------~l~--~~~~~~~l~----- 457 (720)
.++.|++++|.+..++. .+ ...++++|++++|.+....... . .+. .+..+..++
T Consensus 124 ~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~ 203 (844)
T 3j0a_A 124 ALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRN 203 (844)
T ss_dssp SCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTT
T ss_pred CCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCcccc
Confidence 46667777766665532 22 3556666666666553221000 0 000 111233333
Q ss_pred -CceeeecCCCCCCCCCCCCcccCccchh---------------------------hhHHHHhcc--CCCCcEEeccCCC
Q 047161 458 -NLEELILDGCKRLQNCTSLTTLPREIAT---------------------------ESLQKLIEL--LTGLVFLNLNDCK 507 (720)
Q Consensus 458 -~L~~L~L~~~~~l~~~~~L~~lp~~~~~---------------------------~~l~~~i~~--l~~L~~L~Ls~n~ 507 (720)
.|+.|++++|..- ..++..+.. ...+..+.. .++|+.|++++|.
T Consensus 204 ~~L~~L~Ls~n~l~------~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~ 277 (844)
T 3j0a_A 204 MVLEILDVSGNGWT------VDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGF 277 (844)
T ss_dssp CCBSEEBCSSCCSS------TTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCC
T ss_pred CceeEEecCCCcCc------hhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCc
Confidence 3888888887521 112211100 000111222 2689999999999
Q ss_pred CCcccCCCCCCCCCCCEEeccCCCCCcccCcCcCCCCCCCEEeccCcccccCCccccCCcCCceEEEeecCCCCCCCCCc
Q 047161 508 ILVRLPSTINGWKSLRTVNLSRCSKLENMPESLGQMESLEELDVSGTVIRQPVPSIFFPSRILKVYLFVDTRDHRTSSSS 587 (720)
Q Consensus 508 ~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 587 (720)
+.+..|..++.+++|++|+|++|.+.+..|..+..+++|++|++++|.+.+.++..+..+++|+.|++++|.+..+.+..
T Consensus 278 l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~ 357 (844)
T 3j0a_A 278 VFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQT 357 (844)
T ss_dssp CCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSC
T ss_pred ccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhh
Confidence 87777889999999999999999888888889999999999999999999998877777799999999999999999999
Q ss_pred ccccccccccccCCCCcccccCCCCCCCCCCCcc---------------cccEEECCCCCCccccc--cccCCCCCceee
Q 047161 588 WHLWFPFSLMQKGSSDSMALMLPSLSGLCSLTEL---------------NLKKLNLRRNNFVSLRG--TINHLPKFKHLK 650 (720)
Q Consensus 588 ~~~l~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L---------------~L~~L~Ls~n~l~~lp~--~i~~l~~L~~L~ 650 (720)
|..+..|+.+++..+...... .+++|+.| +++.|++++|.++.++. .+.++++|+.|+
T Consensus 358 ~~~l~~L~~L~Ls~N~l~~i~-----~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~ 432 (844)
T 3j0a_A 358 FKFLEKLQTLDLRDNALTTIH-----FIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILI 432 (844)
T ss_dssp SCSCCCCCEEEEETCCSCCCS-----SCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEE
T ss_pred hcCCCCCCEEECCCCCCCccc-----CCCCcchhccCCCCcccccccccccceeecccCccccCchhhhhhcCCccceee
Confidence 999999999999887654321 23333322 23556666666665432 344667777777
Q ss_pred ccccc
Q 047161 651 LDDCK 655 (720)
Q Consensus 651 L~~c~ 655 (720)
|++|.
T Consensus 433 Ls~N~ 437 (844)
T 3j0a_A 433 LNQNR 437 (844)
T ss_dssp EESCC
T ss_pred CCCCc
Confidence 77764
No 47
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.84 E-value=7.6e-20 Score=200.29 Aligned_cols=272 Identities=16% Similarity=0.145 Sum_probs=211.7
Q ss_pred chhccCCcceEEEeccccCC--cccCccccceEEEecCCCCCCCCCCCCCCcceEeeCCCCchhHHhhhccCccccCCCC
Q 047161 377 AFLKMTNLRLLKIHNLQLPA--GLESLSDELRLLQWHGYPLKSLPSSMEMDKTLECNMCYRRIEQFWKGIKNLIRTPDFT 454 (720)
Q Consensus 377 ~~~~l~~L~~L~l~~~~l~~--~~~~l~~~l~~L~~~~~~~~~lp~~~~~~~l~~L~l~~~~i~~l~~~~~~l~~~~~~~ 454 (720)
.++++++|+.|++++|.+.. ++..+ ..++.|++++|.+..+| .....++++|++++|.+..+ + ++
T Consensus 37 ~~~~l~~L~~L~Ls~n~l~~~~~l~~l-~~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N~l~~~----------~-~~ 103 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSSITDMTGIEKL-TGLTKLICTSNNITTLD-LSQNTNLTYLACDSNKLTNL----------D-VT 103 (457)
T ss_dssp EHHHHTTCCEEECCSSCCCCCTTGGGC-TTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCC----------C-CT
T ss_pred ChhHcCCCCEEEccCCCcccChhhccc-CCCCEEEccCCcCCeEc-cccCCCCCEEECcCCCCcee----------e-cC
Confidence 67889999999999998753 33333 46999999999999987 44568899999999887543 2 78
Q ss_pred CCCCceeeecCCCCCCCCCCCCcccCccchhhhHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCCCc
Q 047161 455 GAPNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLE 534 (720)
Q Consensus 455 ~l~~L~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~l~ 534 (720)
.+++|++|++++|. +..+| ++.+++|++|++++|.+.+ +| ++++++|++|++++|...+
T Consensus 104 ~l~~L~~L~L~~N~-------l~~l~-----------~~~l~~L~~L~l~~N~l~~-l~--l~~l~~L~~L~l~~n~~~~ 162 (457)
T 3bz5_A 104 PLTKLTYLNCDTNK-------LTKLD-----------VSQNPLLTYLNCARNTLTE-ID--VSHNTQLTELDCHLNKKIT 162 (457)
T ss_dssp TCTTCCEEECCSSC-------CSCCC-----------CTTCTTCCEEECTTSCCSC-CC--CTTCTTCCEEECTTCSCCC
T ss_pred CCCcCCEEECCCCc-------CCeec-----------CCCCCcCCEEECCCCccce-ec--cccCCcCCEEECCCCCccc
Confidence 99999999999997 44443 6679999999999999554 54 8899999999999998777
Q ss_pred ccCcCcCCCCCCCEEeccCcccccCCccccCCcCCceEEEeecCCCCCCCCCcccccccccccccCCCCcccccCCCCCC
Q 047161 535 NMPESLGQMESLEELDVSGTVIRQPVPSIFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSLSG 614 (720)
Q Consensus 535 ~lp~~~~~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~l~~ 614 (720)
.+ .++.+++|++|++++|.+.+++ +..+++|+.|++++|.+..+ .+..+..++.+++..+.... +| +..
T Consensus 163 ~~--~~~~l~~L~~L~ls~n~l~~l~---l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~--ip-~~~ 231 (457)
T 3bz5_A 163 KL--DVTPQTQLTTLDCSFNKITELD---VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE--ID-VTP 231 (457)
T ss_dssp CC--CCTTCTTCCEEECCSSCCCCCC---CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC--CC-CTT
T ss_pred cc--ccccCCcCCEEECCCCccceec---cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc--cC-ccc
Confidence 77 4889999999999999999976 33448999999999998886 47788899999999888766 33 677
Q ss_pred CCCCCcccccEEECCCCCCccccc-cccCCC-------CCceeeccccccccccCCcc-cccceEeeecCcccccchhh-
Q 047161 615 LCSLTELNLKKLNLRRNNFVSLRG-TINHLP-------KFKHLKLDDCKRLRSLSELP-SDIKKVRVHGCTSLATISDA- 684 (720)
Q Consensus 615 l~~L~~L~L~~L~Ls~n~l~~lp~-~i~~l~-------~L~~L~L~~c~~L~~lp~lp-~~L~~L~l~~c~~L~~lp~~- 684 (720)
+++| +.|++++|.++.+|. .+.++. +|+.|++++|+.+..+|.-. ++|+.|++++|..++.+|..
T Consensus 232 l~~L-----~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~l~~l~~~~ 306 (457)
T 3bz5_A 232 LTQL-----TYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQA 306 (457)
T ss_dssp CTTC-----SEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCTTCCCCCCTTCTTCCEEECTT
T ss_pred cCCC-----CEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCcccccccccCCEEECCCCcccceeccCC
Confidence 7766 788999999998772 233333 45566677776666665321 67999999999988888853
Q ss_pred -------ccCchhHhhhhhhc
Q 047161 685 -------LRSCNSATSRIFCI 698 (720)
Q Consensus 685 -------~~~~~~L~~l~~~~ 698 (720)
+.++++|+.|.+..
T Consensus 307 ~~L~~L~l~~~~~L~~L~L~~ 327 (457)
T 3bz5_A 307 AGITELDLSQNPKLVYLYLNN 327 (457)
T ss_dssp CCCSCCCCTTCTTCCEEECTT
T ss_pred CcceEechhhcccCCEEECCC
Confidence 33445555544443
No 48
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.83 E-value=2.2e-20 Score=200.97 Aligned_cols=258 Identities=14% Similarity=0.160 Sum_probs=195.4
Q ss_pred ccceEEEecCCCCCCCCCCC--CCCcceEeeCCCCchhHHhhhccCccccCCCCCCCCceeeecCCCCCCCCCCCCcccC
Q 047161 403 DELRLLQWHGYPLKSLPSSM--EMDKTLECNMCYRRIEQFWKGIKNLIRTPDFTGAPNLEELILDGCKRLQNCTSLTTLP 480 (720)
Q Consensus 403 ~~l~~L~~~~~~~~~lp~~~--~~~~l~~L~l~~~~i~~l~~~~~~l~~~~~~~~l~~L~~L~L~~~~~l~~~~~L~~lp 480 (720)
..++.+++.++.++.+|..+ ...+++.|+++++.+..+.. ..|..+++|++|+|++|. +..++
T Consensus 45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~--------~~~~~l~~L~~L~L~~n~-------l~~~~ 109 (390)
T 3o6n_A 45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDT--------YAFAYAHTIQKLYMGFNA-------IRYLP 109 (390)
T ss_dssp CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECT--------TTTTTCTTCCEEECCSSC-------CCCCC
T ss_pred CCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccCh--------hhccCCCCcCEEECCCCC-------CCcCC
Confidence 56899999999999999753 36789999999988765422 258899999999999987 56665
Q ss_pred ccchhhhHHHHhccCCCCcEEeccCCCCCcccCCC-CCCCCCCCEEeccCCCCCcccCcCcCCCCCCCEEeccCcccccC
Q 047161 481 REIATESLQKLIELLTGLVFLNLNDCKILVRLPST-INGWKSLRTVNLSRCSKLENMPESLGQMESLEELDVSGTVIRQP 559 (720)
Q Consensus 481 ~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~-i~~l~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~L~~n~l~~~ 559 (720)
... ++.+++|++|++++|.+ ..+|.. ++++++|++|++++|.+.+..|..++.+++|++|++++|.+.+.
T Consensus 110 ~~~--------~~~l~~L~~L~L~~n~l-~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 180 (390)
T 3o6n_A 110 PHV--------FQNVPLLTVLVLERNDL-SSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV 180 (390)
T ss_dssp TTT--------TTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC
T ss_pred HHH--------hcCCCCCCEEECCCCcc-CcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc
Confidence 543 78899999999999984 567766 58999999999999987776677899999999999999999887
Q ss_pred CccccCCcCCceEEEeecCCCCC-------------------CCCCcccccccccccccCCCCcccccCCCCCCCCCCCc
Q 047161 560 VPSIFFPSRILKVYLFVDTRDHR-------------------TSSSSWHLWFPFSLMQKGSSDSMALMLPSLSGLCSLTE 620 (720)
Q Consensus 560 ~~~~~~~~~~L~~L~l~~~~~~~-------------------~~~~~~~~l~~l~~l~l~~~~~~~~~~~~l~~l~~L~~ 620 (720)
+.... ++|+.|++++|.+.. ++... ...++.+.+..+..... +.+..+++|
T Consensus 181 ~~~~l---~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~n~l~~~--~~l~~l~~L-- 250 (390)
T 3o6n_A 181 DLSLI---PSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPV---NVELTILKLQHNNLTDT--AWLLNYPGL-- 250 (390)
T ss_dssp CGGGC---TTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCC---CSSCCEEECCSSCCCCC--GGGGGCTTC--
T ss_pred ccccc---cccceeecccccccccCCCCcceEEECCCCeeeeccccc---cccccEEECCCCCCccc--HHHcCCCCc--
Confidence 54332 566666665554443 22111 23455555655554432 335555554
Q ss_pred ccccEEECCCCCCccc-cccccCCCCCceeeccccccccccCCc---ccccceEeeecCcccccchhhccCchhHhhhhh
Q 047161 621 LNLKKLNLRRNNFVSL-RGTINHLPKFKHLKLDDCKRLRSLSEL---PSDIKKVRVHGCTSLATISDALRSCNSATSRIF 696 (720)
Q Consensus 621 L~L~~L~Ls~n~l~~l-p~~i~~l~~L~~L~L~~c~~L~~lp~l---p~~L~~L~l~~c~~L~~lp~~~~~~~~L~~l~~ 696 (720)
+.|++++|.++.+ |..+..+++|+.|++++| .+..+|.. .++|+.|++++| .+..+|..+..+++|+.|++
T Consensus 251 ---~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L 325 (390)
T 3o6n_A 251 ---VEVDLSYNELEKIMYHPFVKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYL 325 (390)
T ss_dssp ---SEEECCSSCCCEEESGGGTTCSSCCEEECCSS-CCCEEECSSSCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEEC
T ss_pred ---cEEECCCCcCCCcChhHccccccCCEEECCCC-cCcccCcccCCCCCCCEEECCCC-cceecCccccccCcCCEEEC
Confidence 7889999999866 678899999999999998 46666542 267999999998 57789988888899998777
Q ss_pred hcc
Q 047161 697 CIN 699 (720)
Q Consensus 697 ~~n 699 (720)
.+|
T Consensus 326 ~~N 328 (390)
T 3o6n_A 326 DHN 328 (390)
T ss_dssp CSS
T ss_pred CCC
Confidence 655
No 49
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.83 E-value=1.2e-20 Score=212.82 Aligned_cols=160 Identities=18% Similarity=0.188 Sum_probs=117.1
Q ss_pred chhccCCcceEEEeccccC----CcccCccccceEEEecCCCCCCCCCC-C-CCCcceEeeCCCCchhHHhhhccCcccc
Q 047161 377 AFLKMTNLRLLKIHNLQLP----AGLESLSDELRLLQWHGYPLKSLPSS-M-EMDKTLECNMCYRRIEQFWKGIKNLIRT 450 (720)
Q Consensus 377 ~~~~l~~L~~L~l~~~~l~----~~~~~l~~~l~~L~~~~~~~~~lp~~-~-~~~~l~~L~l~~~~i~~l~~~~~~l~~~ 450 (720)
.|.++++|++|++++|.+. ..+..+ ..++.|++++|.+..+|.. + ...++++|++++|.+..+. .+
T Consensus 45 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-------~~ 116 (549)
T 2z81_A 45 DLRACANLQVLILKSSRINTIEGDAFYSL-GSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLG-------VT 116 (549)
T ss_dssp TTSSCTTCCEEECTTSCCCEECTTTTTTC-TTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSC-------SS
T ss_pred hhhcCCcccEEECCCCCcCccChhhcccc-ccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccc-------hh
Confidence 6788888888888888662 334333 4588888888888877753 3 4567888888887765321 12
Q ss_pred CCCCCCCCceeeecCCCCCCCCCCCCcccCccchhhhHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCC
Q 047161 451 PDFTGAPNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRC 530 (720)
Q Consensus 451 ~~~~~l~~L~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~ 530 (720)
+.++.+++|++|++++|..+ ..+|... ++.+++|++|++++|.+.+..|..++++++|++|++++|
T Consensus 117 ~~~~~l~~L~~L~L~~n~~~------~~~~~~~--------~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n 182 (549)
T 2z81_A 117 SLFPNLTNLQTLRIGNVETF------SEIRRID--------FAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLS 182 (549)
T ss_dssp CSCTTCTTCCEEEEEESSSC------CEECTTT--------TTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECS
T ss_pred hhhhccCCccEEECCCCccc------cccCHhh--------hhcccccCeeeccCCcccccChhhhhccccCceEecccC
Confidence 35778888888888887633 4555322 778888999999998877778888888999999999887
Q ss_pred CCCcccCcC-cCCCCCCCEEeccCcccccC
Q 047161 531 SKLENMPES-LGQMESLEELDVSGTVIRQP 559 (720)
Q Consensus 531 ~~l~~lp~~-~~~L~~L~~L~L~~n~l~~~ 559 (720)
.. +.+|.. ++.+++|++|++++|.+.+.
T Consensus 183 ~~-~~~~~~~~~~l~~L~~L~L~~n~l~~~ 211 (549)
T 2z81_A 183 ES-AFLLEIFADILSSVRYLELRDTNLARF 211 (549)
T ss_dssp BS-TTHHHHHHHSTTTBSEEEEESCBCTTC
T ss_pred cc-cccchhhHhhcccccEEEccCCccccc
Confidence 53 445544 35688999999999988774
No 50
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.83 E-value=7.8e-20 Score=189.82 Aligned_cols=238 Identities=18% Similarity=0.208 Sum_probs=135.4
Q ss_pred EEecCCCCCCCCCCCCCCcceEeeCCCCchhHHhhhccCccccCCCCCCCCceeeecCCCCCCCCCCCCccc---Cccch
Q 047161 408 LQWHGYPLKSLPSSMEMDKTLECNMCYRRIEQFWKGIKNLIRTPDFTGAPNLEELILDGCKRLQNCTSLTTL---PREIA 484 (720)
Q Consensus 408 L~~~~~~~~~lp~~~~~~~l~~L~l~~~~i~~l~~~~~~l~~~~~~~~l~~L~~L~L~~~~~l~~~~~L~~l---p~~~~ 484 (720)
++.+++.++.+|..+. .++++|+++++.+..+... .|..+++|++|+|++|. +..+ +..
T Consensus 12 l~c~~~~l~~ip~~~~-~~l~~L~L~~n~l~~i~~~--------~~~~l~~L~~L~L~~n~-------l~~~~~~~~~-- 73 (306)
T 2z66_A 12 IRCNSKGLTSVPTGIP-SSATRLELESNKLQSLPHG--------VFDKLTQLTKLSLSSNG-------LSFKGCCSQS-- 73 (306)
T ss_dssp EECCSSCCSSCCSCCC-TTCCEEECCSSCCCCCCTT--------TTTTCTTCSEEECCSSC-------CCEEEEEEHH--
T ss_pred EEcCCCCcccCCCCCC-CCCCEEECCCCccCccCHh--------HhhccccCCEEECCCCc-------cCcccCcccc--
Confidence 3444444445554332 3444555554444322111 15566666666666665 2222 222
Q ss_pred hhhHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCCCcccC-cCcCCCCCCCEEeccCcccccCCccc
Q 047161 485 TESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMP-ESLGQMESLEELDVSGTVIRQPVPSI 563 (720)
Q Consensus 485 ~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp-~~~~~L~~L~~L~L~~n~l~~~~~~~ 563 (720)
+..+++|++|++++|. +..+|..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+.++..
T Consensus 74 -------~~~~~~L~~L~Ls~n~-i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 145 (306)
T 2z66_A 74 -------DFGTTSLKYLDLSFNG-VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI 145 (306)
T ss_dssp -------HHSCSCCCEEECCSCS-EEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTT
T ss_pred -------cccccccCEEECCCCc-cccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhh
Confidence 4456666666666666 34556666666666666666664332222 35666666666666666666666555
Q ss_pred cCCcCCceEEEeecCCCCC-CCCCcccccccccccccCCCCcccccCCCCCCCCCCCcccccEEECCCCCCccccc-ccc
Q 047161 564 FFPSRILKVYLFVDTRDHR-TSSSSWHLWFPFSLMQKGSSDSMALMLPSLSGLCSLTELNLKKLNLRRNNFVSLRG-TIN 641 (720)
Q Consensus 564 ~~~~~~L~~L~l~~~~~~~-~~~~~~~~l~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~L~Ls~n~l~~lp~-~i~ 641 (720)
+..+++|+.|++++|.+.. ..+..+..+..++.++++.+.........+..+++| +.|++++|.++.+|. .+.
T Consensus 146 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L-----~~L~L~~N~l~~~~~~~~~ 220 (306)
T 2z66_A 146 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL-----QVLNMSHNNFFSLDTFPYK 220 (306)
T ss_dssp TTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTC-----CEEECTTSCCSBCCSGGGT
T ss_pred cccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCC-----CEEECCCCccCccChhhcc
Confidence 5545666666666665544 344455555556666665555544444446666655 667777777776653 567
Q ss_pred CCCCCceeeccccccccccC----CcccccceEeeecCc
Q 047161 642 HLPKFKHLKLDDCKRLRSLS----ELPSDIKKVRVHGCT 676 (720)
Q Consensus 642 ~l~~L~~L~L~~c~~L~~lp----~lp~~L~~L~l~~c~ 676 (720)
.+++|+.|++++|+.-...| .+|++|+.|++++++
T Consensus 221 ~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 221 CLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp TCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred CcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCC
Confidence 77788888888775322222 345567777777765
No 51
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.83 E-value=2.8e-20 Score=211.55 Aligned_cols=258 Identities=14% Similarity=0.161 Sum_probs=198.2
Q ss_pred ccceEEEecCCCCCCCCCCC--CCCcceEeeCCCCchhHHhhhccCccccCCCCCCCCceeeecCCCCCCCCCCCCcccC
Q 047161 403 DELRLLQWHGYPLKSLPSSM--EMDKTLECNMCYRRIEQFWKGIKNLIRTPDFTGAPNLEELILDGCKRLQNCTSLTTLP 480 (720)
Q Consensus 403 ~~l~~L~~~~~~~~~lp~~~--~~~~l~~L~l~~~~i~~l~~~~~~l~~~~~~~~l~~L~~L~L~~~~~l~~~~~L~~lp 480 (720)
..++.+.+.++.+..+|..+ ...+++.|+++++.+..+. +..|+.+++|++|+|++|. +..+|
T Consensus 51 ~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~--------~~~~~~l~~L~~L~L~~n~-------l~~~~ 115 (597)
T 3oja_B 51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEID--------TYAFAYAHTIQKLYMGFNA-------IRYLP 115 (597)
T ss_dssp CCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEEC--------TTTTTTCTTCCEEECCSSC-------CCCCC
T ss_pred CCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCC--------hHHhcCCCCCCEEECCCCc-------CCCCC
Confidence 45789999999999999754 3578999999998876542 2258899999999999997 56676
Q ss_pred ccchhhhHHHHhccCCCCcEEeccCCCCCcccCCC-CCCCCCCCEEeccCCCCCcccCcCcCCCCCCCEEeccCcccccC
Q 047161 481 REIATESLQKLIELLTGLVFLNLNDCKILVRLPST-INGWKSLRTVNLSRCSKLENMPESLGQMESLEELDVSGTVIRQP 559 (720)
Q Consensus 481 ~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~-i~~l~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~L~~n~l~~~ 559 (720)
... ++.+++|++|+|++|.+. .+|.. ++++++|++|+|++|.+.+..|..++++++|++|++++|.+.+.
T Consensus 116 ~~~--------~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 186 (597)
T 3oja_B 116 PHV--------FQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV 186 (597)
T ss_dssp TTT--------TTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC
T ss_pred HHH--------HcCCCCCCEEEeeCCCCC-CCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc
Confidence 653 788999999999999854 56655 58999999999999988777778899999999999999999987
Q ss_pred CccccCCcCCceEEEeecCCCCC-------------------CCCCcccccccccccccCCCCcccccCCCCCCCCCCCc
Q 047161 560 VPSIFFPSRILKVYLFVDTRDHR-------------------TSSSSWHLWFPFSLMQKGSSDSMALMLPSLSGLCSLTE 620 (720)
Q Consensus 560 ~~~~~~~~~~L~~L~l~~~~~~~-------------------~~~~~~~~l~~l~~l~l~~~~~~~~~~~~l~~l~~L~~ 620 (720)
+...+ ++|+.|++++|.+.. ++...+ ..+..+.+..+...+ ++.+..+++|
T Consensus 187 ~~~~l---~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~---~~L~~L~L~~n~l~~--~~~l~~l~~L-- 256 (597)
T 3oja_B 187 DLSLI---PSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVN---VELTILKLQHNNLTD--TAWLLNYPGL-- 256 (597)
T ss_dssp CGGGC---TTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCC---SCCCEEECCSSCCCC--CGGGGGCTTC--
T ss_pred Chhhh---hhhhhhhcccCccccccCCchhheeeccCCcccccccccC---CCCCEEECCCCCCCC--ChhhccCCCC--
Confidence 64432 566666665554443 222211 245555666555443 2345566655
Q ss_pred ccccEEECCCCCCccc-cccccCCCCCceeeccccccccccCCc---ccccceEeeecCcccccchhhccCchhHhhhhh
Q 047161 621 LNLKKLNLRRNNFVSL-RGTINHLPKFKHLKLDDCKRLRSLSEL---PSDIKKVRVHGCTSLATISDALRSCNSATSRIF 696 (720)
Q Consensus 621 L~L~~L~Ls~n~l~~l-p~~i~~l~~L~~L~L~~c~~L~~lp~l---p~~L~~L~l~~c~~L~~lp~~~~~~~~L~~l~~ 696 (720)
+.|+|++|.+..+ |..+..+++|+.|+|++| .+..+|.. .++|+.|++++|. +..+|..+..+++|+.|++
T Consensus 257 ---~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~l~~L~~L~L 331 (597)
T 3oja_B 257 ---VEVDLSYNELEKIMYHPFVKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHNH-LLHVERNQPQFDRLENLYL 331 (597)
T ss_dssp ---SEEECCSSCCCEEESGGGTTCSSCCEEECTTS-CCCEEECSSSCCTTCCEEECCSSC-CCCCGGGHHHHTTCSEEEC
T ss_pred ---CEEECCCCccCCCCHHHhcCccCCCEEECCCC-CCCCCCcccccCCCCcEEECCCCC-CCccCcccccCCCCCEEEC
Confidence 7889999999866 678999999999999998 46666643 2679999999985 6689988888999999887
Q ss_pred hcc
Q 047161 697 CIN 699 (720)
Q Consensus 697 ~~n 699 (720)
.+|
T Consensus 332 ~~N 334 (597)
T 3oja_B 332 DHN 334 (597)
T ss_dssp CSS
T ss_pred CCC
Confidence 765
No 52
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.83 E-value=1.7e-19 Score=197.28 Aligned_cols=241 Identities=20% Similarity=0.197 Sum_probs=185.7
Q ss_pred ceEEEeccccCCcccCccccceEEEecCCCCCCCCC-CC-CCCcceEeeCCCCchhHHhhhccCccccCCCCCCCCceee
Q 047161 385 RLLKIHNLQLPAGLESLSDELRLLQWHGYPLKSLPS-SM-EMDKTLECNMCYRRIEQFWKGIKNLIRTPDFTGAPNLEEL 462 (720)
Q Consensus 385 ~~L~l~~~~l~~~~~~l~~~l~~L~~~~~~~~~lp~-~~-~~~~l~~L~l~~~~i~~l~~~~~~l~~~~~~~~l~~L~~L 462 (720)
..++..+..+......++..++.|++++|.+..++. .+ ...+++.|++++|.+..+.. ..|.++++|++|
T Consensus 46 ~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~--------~~~~~l~~L~~L 117 (440)
T 3zyj_A 46 SKVICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEI--------GAFNGLANLNTL 117 (440)
T ss_dssp CEEECCSCCCSSCCSCCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECG--------GGGTTCSSCCEE
T ss_pred CEEEeCCCCcCcCCCCCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccCh--------hhccCCccCCEE
Confidence 345555555544444556778888898888887763 33 45778888888887765422 247788899999
Q ss_pred ecCCCCCCCCCCCCcccCccchhhhHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCCCcccCc-CcC
Q 047161 463 ILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMPE-SLG 541 (720)
Q Consensus 463 ~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~-~~~ 541 (720)
+|++|. +..+|... +..+++|++|+|++|.+....+..+.++++|++|++++|..++.+|. .+.
T Consensus 118 ~L~~n~-------l~~~~~~~--------~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~ 182 (440)
T 3zyj_A 118 ELFDNR-------LTTIPNGA--------FVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFE 182 (440)
T ss_dssp ECCSSC-------CSSCCTTT--------SCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTT
T ss_pred ECCCCc-------CCeeCHhH--------hhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhh
Confidence 999886 56776543 77889999999999886554455788899999999998777777775 588
Q ss_pred CCCCCCEEeccCcccccCCccccCCcCCceEEEeecCCCCCCCCCcccccccccccccCCCCcccccCCCCCCCCCCCcc
Q 047161 542 QMESLEELDVSGTVIRQPVPSIFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSLSGLCSLTEL 621 (720)
Q Consensus 542 ~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L 621 (720)
++++|++|++++|.+..++. +. .+++|+.|++++|.+..+.+..|..+..|+.+.+..+.........+.++++|
T Consensus 183 ~l~~L~~L~L~~n~l~~~~~-~~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L--- 257 (440)
T 3zyj_A 183 GLSNLRYLNLAMCNLREIPN-LT-PLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSL--- 257 (440)
T ss_dssp TCSSCCEEECTTSCCSSCCC-CT-TCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTC---
T ss_pred cccccCeecCCCCcCccccc-cC-CCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCC---
Confidence 89999999999998887763 33 34889999999998888888888888899999888888777666668888776
Q ss_pred cccEEECCCCCCccccc-cccCCCCCceeeccccc
Q 047161 622 NLKKLNLRRNNFVSLRG-TINHLPKFKHLKLDDCK 655 (720)
Q Consensus 622 ~L~~L~Ls~n~l~~lp~-~i~~l~~L~~L~L~~c~ 655 (720)
+.|+|++|+++.+|. .+..+++|+.|+|++|+
T Consensus 258 --~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 258 --VEINLAHNNLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp --CEEECTTSCCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred --CEEECCCCCCCccChhHhccccCCCEEEcCCCC
Confidence 778888998888874 45788899999998876
No 53
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.83 E-value=7.3e-19 Score=192.29 Aligned_cols=263 Identities=17% Similarity=0.191 Sum_probs=143.7
Q ss_pred CCcceEEEeccccCCcccCccccceEEEecCCCCCCCCCCCCCCcceEeeCCCCchhHHhhh----------ccCccccC
Q 047161 382 TNLRLLKIHNLQLPAGLESLSDELRLLQWHGYPLKSLPSSMEMDKTLECNMCYRRIEQFWKG----------IKNLIRTP 451 (720)
Q Consensus 382 ~~L~~L~l~~~~l~~~~~~l~~~l~~L~~~~~~~~~lp~~~~~~~l~~L~l~~~~i~~l~~~----------~~~l~~~~ 451 (720)
.+|+.|++++|.+.. +...+..++.|++++|.+..+|......++++|++++|++..+... .+.+..+|
T Consensus 111 ~~L~~L~l~~n~l~~-l~~~~~~L~~L~L~~n~l~~lp~~~~l~~L~~L~l~~N~l~~lp~~~~~L~~L~L~~n~l~~l~ 189 (454)
T 1jl5_A 111 QSLKSLLVDNNNLKA-LSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELP 189 (454)
T ss_dssp TTCCEEECCSSCCSC-CCSCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCC
T ss_pred CCCcEEECCCCccCc-ccCCCCCCCEEECcCCCCCCCcccCCCCCCCEEECCCCcCcccCCCcccccEEECcCCcCCcCc
Confidence 455555555555432 3334456777888888777777544466777888877766543221 12344456
Q ss_pred CCCCCCCceeeecCCCCCCCCCCCCcccCccchhhhHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCC
Q 047161 452 DFTGAPNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCS 531 (720)
Q Consensus 452 ~~~~l~~L~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~ 531 (720)
.++.+++|++|++++|. +..+|.. .++|++|++++|.+ ..+|. ++.+++|++|++++|.
T Consensus 190 ~~~~l~~L~~L~l~~N~-------l~~l~~~------------~~~L~~L~l~~n~l-~~lp~-~~~l~~L~~L~l~~N~ 248 (454)
T 1jl5_A 190 ELQNLPFLTAIYADNNS-------LKKLPDL------------PLSLESIVAGNNIL-EELPE-LQNLPFLTTIYADNNL 248 (454)
T ss_dssp CCTTCTTCCEEECCSSC-------CSSCCCC------------CTTCCEEECCSSCC-SSCCC-CTTCTTCCEEECCSSC
T ss_pred cccCCCCCCEEECCCCc-------CCcCCCC------------cCcccEEECcCCcC-Ccccc-cCCCCCCCEEECCCCc
Confidence 67777777778777776 3334432 24677777777763 46663 6777777777777765
Q ss_pred CCcccCcCcCCCCCCCEEeccCcccccCCccccCCcCCceEEEeecCCCCCCCCCc---------------cccc-cccc
Q 047161 532 KLENMPESLGQMESLEELDVSGTVIRQPVPSIFFPSRILKVYLFVDTRDHRTSSSS---------------WHLW-FPFS 595 (720)
Q Consensus 532 ~l~~lp~~~~~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~---------------~~~l-~~l~ 595 (720)
+. .+|.. +++|++|++++|.+.++|.. +++|+.|++++|.+.+++... +..+ ..++
T Consensus 249 l~-~l~~~---~~~L~~L~l~~N~l~~l~~~----~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~ 320 (454)
T 1jl5_A 249 LK-TLPDL---PPSLEALNVRDNYLTDLPEL----PQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLE 320 (454)
T ss_dssp CS-SCCSC---CTTCCEEECCSSCCSCCCCC----CTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCC
T ss_pred CC-ccccc---ccccCEEECCCCcccccCcc----cCcCCEEECcCCccCcccCcCCcCCEEECcCCcCCcccCCcCcCC
Confidence 43 35542 35667777777766665432 155666666666555432110 0111 2455
Q ss_pred ccccCCCCcccccCCCCCCCCCCCcccccEEECCCCCCccccccccCCCCCceeeccccccccccCCcc-----------
Q 047161 596 LMQKGSSDSMALMLPSLSGLCSLTELNLKKLNLRRNNFVSLRGTINHLPKFKHLKLDDCKRLRSLSELP----------- 664 (720)
Q Consensus 596 ~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~lp----------- 664 (720)
.++++.+.... ++. .++ +|+.|++++|.++.+|. .+++|++|++++|+ +..+|.+|
T Consensus 321 ~L~Ls~N~l~~--lp~--~~~-----~L~~L~L~~N~l~~lp~---~l~~L~~L~L~~N~-l~~l~~ip~~l~~L~~n~~ 387 (454)
T 1jl5_A 321 ELNVSNNKLIE--LPA--LPP-----RLERLIASFNHLAEVPE---LPQNLKQLHVEYNP-LREFPDIPESVEDLRMNSH 387 (454)
T ss_dssp EEECCSSCCSC--CCC--CCT-----TCCEEECCSSCCSCCCC---CCTTCCEEECCSSC-CSSCCCCCTTCCEEECCC-
T ss_pred EEECCCCcccc--ccc--cCC-----cCCEEECCCCccccccc---hhhhccEEECCCCC-CCcCCCChHHHHhhhhccc
Confidence 55555544332 221 123 34889999999999987 47899999999985 55544433
Q ss_pred --------cccceEeeecCcccc--cchhhccC
Q 047161 665 --------SDIKKVRVHGCTSLA--TISDALRS 687 (720)
Q Consensus 665 --------~~L~~L~l~~c~~L~--~lp~~~~~ 687 (720)
++|+.|+++++.-.+ .+|.++..
T Consensus 388 ~~~i~~~~~~L~~L~ls~N~l~~~~~iP~sl~~ 420 (454)
T 1jl5_A 388 LAEVPELPQNLKQLHVETNPLREFPDIPESVED 420 (454)
T ss_dssp ---------------------------------
T ss_pred ccccccccCcCCEEECCCCcCCccccchhhHhh
Confidence 567888888876444 66665443
No 54
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.83 E-value=1.8e-19 Score=189.20 Aligned_cols=258 Identities=19% Similarity=0.268 Sum_probs=203.7
Q ss_pred cceEEEecCCCCCCCCCCCCCCcceEeeCCCCchhHHhhhccCccccCCCCCCCCceeeecCCCCCCCCCCCCccc-Ccc
Q 047161 404 ELRLLQWHGYPLKSLPSSMEMDKTLECNMCYRRIEQFWKGIKNLIRTPDFTGAPNLEELILDGCKRLQNCTSLTTL-PRE 482 (720)
Q Consensus 404 ~l~~L~~~~~~~~~lp~~~~~~~l~~L~l~~~~i~~l~~~~~~l~~~~~~~~l~~L~~L~L~~~~~l~~~~~L~~l-p~~ 482 (720)
.++.++++++.+..+|..+. ..++.|+++++++..+.. ..|..+++|++|+|++|. +..+ |..
T Consensus 32 ~l~~l~~~~~~l~~lp~~~~-~~l~~L~L~~n~i~~~~~--------~~~~~l~~L~~L~L~~n~-------l~~~~~~~ 95 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDLP-PDTALLDLQNNKITEIKD--------GDFKNLKNLHTLILINNK-------ISKISPGA 95 (330)
T ss_dssp ETTEEECTTSCCCSCCCSCC-TTCCEEECCSSCCCCBCT--------TTTTTCTTCCEEECCSSC-------CCCBCTTT
T ss_pred CCeEEEecCCCccccCccCC-CCCeEEECCCCcCCEeCh--------hhhccCCCCCEEECCCCc-------CCeeCHHH
Confidence 57889999999999998764 578899999998765422 248899999999999987 5566 444
Q ss_pred chhhhHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCCCcccCcCcCCCCCCCEEeccCccccc--CC
Q 047161 483 IATESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMPESLGQMESLEELDVSGTVIRQ--PV 560 (720)
Q Consensus 483 ~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~L~~n~l~~--~~ 560 (720)
++.+++|++|++++|. +..+|..+. ++|++|++++|.+.+..+..+.++++|++|++++|.+.. ..
T Consensus 96 ---------~~~l~~L~~L~Ls~n~-l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 163 (330)
T 1xku_A 96 ---------FAPLVKLERLYLSKNQ-LKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIE 163 (330)
T ss_dssp ---------TTTCTTCCEEECCSSC-CSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBC
T ss_pred ---------hcCCCCCCEEECCCCc-CCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcC
Confidence 8889999999999998 568888775 899999999997766556678999999999999999864 55
Q ss_pred ccccCCcCCceEEEeecCCCCCCCCCcccccccccccccCCCCcccccCCCCCCCCCCCcccccEEECCCCCCcccc-cc
Q 047161 561 PSIFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSLSGLCSLTELNLKKLNLRRNNFVSLR-GT 639 (720)
Q Consensus 561 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~L~Ls~n~l~~lp-~~ 639 (720)
+..+..+++|+.|++++|.+..++...+ ..++.+++..+.........+.++++| +.|++++|.++.++ ..
T Consensus 164 ~~~~~~l~~L~~L~l~~n~l~~l~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L-----~~L~Ls~n~l~~~~~~~ 235 (330)
T 1xku_A 164 NGAFQGMKKLSYIRIADTNITTIPQGLP---PSLTELHLDGNKITKVDAASLKGLNNL-----AKLGLSFNSISAVDNGS 235 (330)
T ss_dssp TTGGGGCTTCCEEECCSSCCCSCCSSCC---TTCSEEECTTSCCCEECTGGGTTCTTC-----CEEECCSSCCCEECTTT
T ss_pred hhhccCCCCcCEEECCCCccccCCcccc---ccCCEEECCCCcCCccCHHHhcCCCCC-----CEEECCCCcCceeChhh
Confidence 5556666999999999999888766544 678888888887766655568888876 78899999999876 47
Q ss_pred ccCCCCCceeeccccccccccCC-cc--cccceEeeecCcccccchh-hccC------chhHhhhhhhcc
Q 047161 640 INHLPKFKHLKLDDCKRLRSLSE-LP--SDIKKVRVHGCTSLATISD-ALRS------CNSATSRIFCIN 699 (720)
Q Consensus 640 i~~l~~L~~L~L~~c~~L~~lp~-lp--~~L~~L~l~~c~~L~~lp~-~~~~------~~~L~~l~~~~n 699 (720)
+..+++|+.|++++| .+..+|. +. ++|++|++++|. ++.+|. .+.. .++|..+.+..|
T Consensus 236 ~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N~-i~~~~~~~f~~~~~~~~~~~l~~l~l~~N 303 (330)
T 1xku_A 236 LANTPHLRELHLNNN-KLVKVPGGLADHKYIQVVYLHNNN-ISAIGSNDFCPPGYNTKKASYSGVSLFSN 303 (330)
T ss_dssp GGGSTTCCEEECCSS-CCSSCCTTTTTCSSCCEEECCSSC-CCCCCTTSSSCSSCCTTSCCCSEEECCSS
T ss_pred ccCCCCCCEEECCCC-cCccCChhhccCCCcCEEECCCCc-CCccChhhcCCcccccccccccceEeecC
Confidence 899999999999999 4667764 22 679999999875 666663 3322 245555555544
No 55
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.82 E-value=5.9e-19 Score=199.08 Aligned_cols=265 Identities=21% Similarity=0.163 Sum_probs=191.9
Q ss_pred CCcceEEEeccccCCcccCccccceEEEecCCCCCCCCCCCCCCcceEeeCCCCchhHHhhhccCccccCCCCCCCCcee
Q 047161 382 TNLRLLKIHNLQLPAGLESLSDELRLLQWHGYPLKSLPSSMEMDKTLECNMCYRRIEQFWKGIKNLIRTPDFTGAPNLEE 461 (720)
Q Consensus 382 ~~L~~L~l~~~~l~~~~~~l~~~l~~L~~~~~~~~~lp~~~~~~~l~~L~l~~~~i~~l~~~~~~l~~~~~~~~l~~L~~ 461 (720)
.+++.++++++.+..-...++..++.|++++|.++.+|. ...++..|++++|++..+ |. .+++|++
T Consensus 40 ~~l~~L~ls~n~L~~lp~~l~~~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N~l~~l----------p~--~l~~L~~ 105 (622)
T 3g06_A 40 NGNAVLNVGESGLTTLPDCLPAHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLTSL----------PV--LPPGLLE 105 (622)
T ss_dssp HCCCEEECCSSCCSCCCSCCCTTCSEEEECSCCCSCCCC--CCTTCCEEEECSCCCSCC----------CC--CCTTCCE
T ss_pred CCCcEEEecCCCcCccChhhCCCCcEEEecCCCCCCCCC--cCCCCCEEEcCCCcCCcC----------CC--CCCCCCE
Confidence 357788888887754333445678899999998888887 457888888888876532 33 6788999
Q ss_pred eecCCCCCCCCCCCCcccCccchhhhHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCCCcccCcCcC
Q 047161 462 LILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMPESLG 541 (720)
Q Consensus 462 L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~ 541 (720)
|+|++|. +..+|.. +++|++|++++|. +..+|.. +++|++|++++|.+ ..+|..
T Consensus 106 L~Ls~N~-------l~~l~~~------------l~~L~~L~L~~N~-l~~lp~~---l~~L~~L~Ls~N~l-~~l~~~-- 159 (622)
T 3g06_A 106 LSIFSNP-------LTHLPAL------------PSGLCKLWIFGNQ-LTSLPVL---PPGLQELSVSDNQL-ASLPAL-- 159 (622)
T ss_dssp EEECSCC-------CCCCCCC------------CTTCCEEECCSSC-CSCCCCC---CTTCCEEECCSSCC-SCCCCC--
T ss_pred EECcCCc-------CCCCCCC------------CCCcCEEECCCCC-CCcCCCC---CCCCCEEECcCCcC-CCcCCc--
Confidence 9998886 4566553 6778888998887 4557764 48888999988854 456653
Q ss_pred CCCCCCEEeccCcccccCCccccCCcCCceEEEeecCCCCCCCCCcccccccccccccCCCCcccccCCCCCCCCCCCcc
Q 047161 542 QMESLEELDVSGTVIRQPVPSIFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSLSGLCSLTEL 621 (720)
Q Consensus 542 ~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L 621 (720)
+++|+.|++++|.+.+++ ..+++|+.|++++|.+..++.. +..+..+.+..+.... ++. .+++
T Consensus 160 -~~~L~~L~L~~N~l~~l~----~~~~~L~~L~Ls~N~l~~l~~~----~~~L~~L~L~~N~l~~--l~~--~~~~---- 222 (622)
T 3g06_A 160 -PSELCKLWAYNNQLTSLP----MLPSGLQELSVSDNQLASLPTL----PSELYKLWAYNNRLTS--LPA--LPSG---- 222 (622)
T ss_dssp -CTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCSCCCCC----CTTCCEEECCSSCCSS--CCC--CCTT----
T ss_pred -cCCCCEEECCCCCCCCCc----ccCCCCcEEECCCCCCCCCCCc----cchhhEEECcCCcccc--cCC--CCCC----
Confidence 467888888888888876 2237888888888887775542 3566666666665442 221 1233
Q ss_pred cccEEECCCCCCccccccccCCCCCceeeccccccccccCCcccccceEeeecCcccccchhhccCchhHhhhhhhcccc
Q 047161 622 NLKKLNLRRNNFVSLRGTINHLPKFKHLKLDDCKRLRSLSELPSDIKKVRVHGCTSLATISDALRSCNSATSRIFCINCP 701 (720)
Q Consensus 622 ~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~lp~~L~~L~l~~c~~L~~lp~~~~~~~~L~~l~~~~nc~ 701 (720)
|+.|++++|.++.+| ..+++|+.|+|++| .+..+|..+++|+.|++++| .+..+|..+.++++|+.+++.+|.-
T Consensus 223 -L~~L~Ls~N~L~~lp---~~l~~L~~L~Ls~N-~L~~lp~~~~~L~~L~Ls~N-~L~~lp~~l~~l~~L~~L~L~~N~l 296 (622)
T 3g06_A 223 -LKELIVSGNRLTSLP---VLPSELKELMVSGN-RLTSLPMLPSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNPL 296 (622)
T ss_dssp -CCEEECCSSCCSCCC---CCCTTCCEEECCSS-CCSCCCCCCTTCCEEECCSS-CCCSCCGGGGGSCTTCEEECCSCCC
T ss_pred -CCEEEccCCccCcCC---CCCCcCcEEECCCC-CCCcCCcccccCcEEeCCCC-CCCcCCHHHhhccccCEEEecCCCC
Confidence 478888999998888 45688999999998 67788887788999999987 4778898888999998877776632
Q ss_pred -hhHHHHHh
Q 047161 702 -KLILNWLQ 709 (720)
Q Consensus 702 -~l~~~w~~ 709 (720)
...+..+.
T Consensus 297 ~~~~~~~l~ 305 (622)
T 3g06_A 297 SERTLQALR 305 (622)
T ss_dssp CHHHHHHHH
T ss_pred CCcCHHHHH
Confidence 33344443
No 56
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.82 E-value=2.7e-19 Score=196.42 Aligned_cols=241 Identities=20% Similarity=0.166 Sum_probs=189.9
Q ss_pred ceEEEeccccCCcccCccccceEEEecCCCCCCCC-CCC-CCCcceEeeCCCCchhHHhhhccCccccCCCCCCCCceee
Q 047161 385 RLLKIHNLQLPAGLESLSDELRLLQWHGYPLKSLP-SSM-EMDKTLECNMCYRRIEQFWKGIKNLIRTPDFTGAPNLEEL 462 (720)
Q Consensus 385 ~~L~l~~~~l~~~~~~l~~~l~~L~~~~~~~~~lp-~~~-~~~~l~~L~l~~~~i~~l~~~~~~l~~~~~~~~l~~L~~L 462 (720)
..++..+..+......++..++.|++++|.+..++ ..| ...+++.|++++|.+..+. ...|.++++|++|
T Consensus 57 ~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~--------~~~~~~l~~L~~L 128 (452)
T 3zyi_A 57 SKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIE--------VGAFNGLASLNTL 128 (452)
T ss_dssp CEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEEC--------TTTTTTCTTCCEE
T ss_pred cEEEECCCCcCccCCCCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcC--------hhhccCcccCCEE
Confidence 44555555554434455677889999999888774 344 4678888999888776542 2347889999999
Q ss_pred ecCCCCCCCCCCCCcccCccchhhhHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCCCcccCc-CcC
Q 047161 463 ILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMPE-SLG 541 (720)
Q Consensus 463 ~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~-~~~ 541 (720)
+|++|. +..+|... +..+++|++|+|++|.+....+..+.++++|++|++++|..++.+|. .+.
T Consensus 129 ~L~~n~-------l~~~~~~~--------~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~ 193 (452)
T 3zyi_A 129 ELFDNW-------LTVIPSGA--------FEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFE 193 (452)
T ss_dssp ECCSSC-------CSBCCTTT--------SSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTT
T ss_pred ECCCCc-------CCccChhh--------hcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhcc
Confidence 999987 56777654 77899999999999986544445788999999999999878887775 588
Q ss_pred CCCCCCEEeccCcccccCCccccCCcCCceEEEeecCCCCCCCCCcccccccccccccCCCCcccccCCCCCCCCCCCcc
Q 047161 542 QMESLEELDVSGTVIRQPVPSIFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSLSGLCSLTEL 621 (720)
Q Consensus 542 ~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L 621 (720)
.+++|++|++++|.+.+++ .+.. +++|+.|++++|.+..+.+..|..+..|+.+.+..+.........+.++++|
T Consensus 194 ~l~~L~~L~L~~n~l~~~~-~~~~-l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L--- 268 (452)
T 3zyi_A 194 GLFNLKYLNLGMCNIKDMP-NLTP-LVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASL--- 268 (452)
T ss_dssp TCTTCCEEECTTSCCSSCC-CCTT-CTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTC---
T ss_pred CCCCCCEEECCCCcccccc-cccc-cccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCC---
Confidence 8999999999999998875 3333 4899999999999998888889999999999998888777766678888876
Q ss_pred cccEEECCCCCCccccc-cccCCCCCceeeccccc
Q 047161 622 NLKKLNLRRNNFVSLRG-TINHLPKFKHLKLDDCK 655 (720)
Q Consensus 622 ~L~~L~Ls~n~l~~lp~-~i~~l~~L~~L~L~~c~ 655 (720)
+.|+|++|.++.+|. .+..+++|+.|+|++|+
T Consensus 269 --~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 269 --VELNLAHNNLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp --CEEECCSSCCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred --CEEECCCCcCCccChHHhccccCCCEEEccCCC
Confidence 788889999998874 46788999999999886
No 57
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.82 E-value=2.9e-19 Score=187.79 Aligned_cols=258 Identities=18% Similarity=0.268 Sum_probs=203.2
Q ss_pred cceEEEecCCCCCCCCCCCCCCcceEeeCCCCchhHHhhhccCccccCCCCCCCCceeeecCCCCCCCCCCCCcccCccc
Q 047161 404 ELRLLQWHGYPLKSLPSSMEMDKTLECNMCYRRIEQFWKGIKNLIRTPDFTGAPNLEELILDGCKRLQNCTSLTTLPREI 483 (720)
Q Consensus 404 ~l~~L~~~~~~~~~lp~~~~~~~l~~L~l~~~~i~~l~~~~~~l~~~~~~~~l~~L~~L~L~~~~~l~~~~~L~~lp~~~ 483 (720)
.++.++++++.+..+|..+. ..++.|+++++.+..+. ...|..+++|++|++++|. +..++...
T Consensus 34 ~l~~l~~~~~~l~~ip~~~~-~~l~~L~l~~n~i~~~~--------~~~~~~l~~L~~L~L~~n~-------l~~~~~~~ 97 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEIS-PDTTLLDLQNNDISELR--------KDDFKGLQHLYALVLVNNK-------ISKIHEKA 97 (332)
T ss_dssp ETTEEECCSSCCSSCCSCCC-TTCCEEECCSSCCCEEC--------TTTTTTCTTCCEEECCSSC-------CCEECGGG
T ss_pred cCCEEECCCCCccccCCCCC-CCCeEEECCCCcCCccC--------HhHhhCCCCCcEEECCCCc-------cCccCHhH
Confidence 57889999999999998774 68899999999876542 1248899999999999997 56664332
Q ss_pred hhhhHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCCCcccCcCcCCCCCCCEEeccCccccc--CCc
Q 047161 484 ATESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMPESLGQMESLEELDVSGTVIRQ--PVP 561 (720)
Q Consensus 484 ~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~L~~n~l~~--~~~ 561 (720)
++.+++|++|++++|. +..+|..+. ++|++|++++|.+....+..+.++++|++|++++|.+.. ..+
T Consensus 98 --------~~~l~~L~~L~L~~n~-l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 166 (332)
T 2ft3_A 98 --------FSPLRKLQKLYISKNH-LVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEP 166 (332)
T ss_dssp --------STTCTTCCEEECCSSC-CCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCT
T ss_pred --------hhCcCCCCEEECCCCc-CCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCc
Confidence 8889999999999998 568888775 899999999997665444568999999999999999964 666
Q ss_pred cccCCcCCceEEEeecCCCCCCCCCcccccccccccccCCCCcccccCCCCCCCCCCCcccccEEECCCCCCcccc-ccc
Q 047161 562 SIFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSLSGLCSLTELNLKKLNLRRNNFVSLR-GTI 640 (720)
Q Consensus 562 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~L~Ls~n~l~~lp-~~i 640 (720)
..+..+ +|+.|++++|.+..++...+ ..++.+++..+.........+..+++| +.|++++|.++.++ .++
T Consensus 167 ~~~~~l-~L~~L~l~~n~l~~l~~~~~---~~L~~L~l~~n~i~~~~~~~l~~l~~L-----~~L~L~~N~l~~~~~~~~ 237 (332)
T 2ft3_A 167 GAFDGL-KLNYLRISEAKLTGIPKDLP---ETLNELHLDHNKIQAIELEDLLRYSKL-----YRLGLGHNQIRMIENGSL 237 (332)
T ss_dssp TSSCSC-CCSCCBCCSSBCSSCCSSSC---SSCSCCBCCSSCCCCCCTTSSTTCTTC-----SCCBCCSSCCCCCCTTGG
T ss_pred ccccCC-ccCEEECcCCCCCccCcccc---CCCCEEECCCCcCCccCHHHhcCCCCC-----CEEECCCCcCCcCChhHh
Confidence 666664 89999999999988766544 577888888887776666668888877 67788999999876 478
Q ss_pred cCCCCCceeeccccccccccCC-cc--cccceEeeecCcccccch-hhccC------chhHhhhhhhcc
Q 047161 641 NHLPKFKHLKLDDCKRLRSLSE-LP--SDIKKVRVHGCTSLATIS-DALRS------CNSATSRIFCIN 699 (720)
Q Consensus 641 ~~l~~L~~L~L~~c~~L~~lp~-lp--~~L~~L~l~~c~~L~~lp-~~~~~------~~~L~~l~~~~n 699 (720)
..+++|+.|++++| .+..+|. +. ++|+.|+++++. ++.+| ..+.+ ..+|+.+.+..|
T Consensus 238 ~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~~~~~~~l~~L~l~~N 304 (332)
T 2ft3_A 238 SFLPTLRELHLDNN-KLSRVPAGLPDLKLLQVVYLHTNN-ITKVGVNDFCPVGFGVKRAYYNGISLFNN 304 (332)
T ss_dssp GGCTTCCEEECCSS-CCCBCCTTGGGCTTCCEEECCSSC-CCBCCTTSSSCSSCCSSSCCBSEEECCSS
T ss_pred hCCCCCCEEECCCC-cCeecChhhhcCccCCEEECCCCC-CCccChhHccccccccccccccceEeecC
Confidence 99999999999999 4667765 22 679999999975 66666 34433 345666555543
No 58
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.82 E-value=6.4e-19 Score=192.68 Aligned_cols=241 Identities=15% Similarity=0.150 Sum_probs=171.8
Q ss_pred cceEEEecCCCCCCCCCCCCCCcceEeeCCCCchhHHhhhccCccccCCCCCCCCceeeecCCCCCCCCCCCCcccCccc
Q 047161 404 ELRLLQWHGYPLKSLPSSMEMDKTLECNMCYRRIEQFWKGIKNLIRTPDFTGAPNLEELILDGCKRLQNCTSLTTLPREI 483 (720)
Q Consensus 404 ~l~~L~~~~~~~~~lp~~~~~~~l~~L~l~~~~i~~l~~~~~~l~~~~~~~~l~~L~~L~L~~~~~l~~~~~L~~lp~~~ 483 (720)
....++..+..+..+|..+. ..++.|++++|++..+.. ..|..+++|++|+|++|. +..++...
T Consensus 44 ~~~~v~c~~~~l~~iP~~~~-~~l~~L~L~~n~i~~~~~--------~~~~~l~~L~~L~Ls~n~-------i~~i~~~~ 107 (440)
T 3zyj_A 44 QFSKVICVRKNLREVPDGIS-TNTRLLNLHENQIQIIKV--------NSFKHLRHLEILQLSRNH-------IRTIEIGA 107 (440)
T ss_dssp TSCEEECCSCCCSSCCSCCC-TTCSEEECCSCCCCEECT--------TTTSSCSSCCEEECCSSC-------CCEECGGG
T ss_pred CCCEEEeCCCCcCcCCCCCC-CCCcEEEccCCcCCeeCH--------HHhhCCCCCCEEECCCCc-------CCccChhh
Confidence 35567888888999998764 578888888888765432 348889999999999987 56666443
Q ss_pred hhhhHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCCCcccCcCcCCCCCCCEEeccCc-ccccCCcc
Q 047161 484 ATESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMPESLGQMESLEELDVSGT-VIRQPVPS 562 (720)
Q Consensus 484 ~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~L~~n-~l~~~~~~ 562 (720)
|..+++|++|+|++|.+....+..+.++++|++|+|++|.+....+..+.++++|++|++++| .+..+++.
T Consensus 108 --------~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~ 179 (440)
T 3zyj_A 108 --------FNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEG 179 (440)
T ss_dssp --------GTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTT
T ss_pred --------ccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcc
Confidence 788999999999999855444457889999999999998766555557889999999999984 45666666
Q ss_pred ccCCcCCceEEEeecCCCCCCCCCcccccccccccccCCCCcccccCCCCCCCCCCCcccccEEECCCCCCcccc-cccc
Q 047161 563 IFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSLSGLCSLTELNLKKLNLRRNNFVSLR-GTIN 641 (720)
Q Consensus 563 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~L~Ls~n~l~~lp-~~i~ 641 (720)
.+..+++|+.|++++|.+..++ .+..+..|+.++++.|.........+.++++| +.|+|++|.++.++ ..+.
T Consensus 180 ~~~~l~~L~~L~L~~n~l~~~~--~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L-----~~L~L~~n~l~~~~~~~~~ 252 (440)
T 3zyj_A 180 AFEGLSNLRYLNLAMCNLREIP--NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHL-----QKLWMIQSQIQVIERNAFD 252 (440)
T ss_dssp TTTTCSSCCEEECTTSCCSSCC--CCTTCSSCCEEECTTSCCCEECTTTTTTCTTC-----CEEECTTCCCCEECTTSST
T ss_pred hhhcccccCeecCCCCcCcccc--ccCCCcccCEEECCCCccCccChhhhccCccC-----CEEECCCCceeEEChhhhc
Confidence 6666789999999888777654 35666667777777666655555556666655 56666777776553 4566
Q ss_pred CCCCCceeeccccccccccCC--c--ccccceEeeecCc
Q 047161 642 HLPKFKHLKLDDCKRLRSLSE--L--PSDIKKVRVHGCT 676 (720)
Q Consensus 642 ~l~~L~~L~L~~c~~L~~lp~--l--p~~L~~L~l~~c~ 676 (720)
++++|+.|+|++| .+..+|. + .++|+.|++++++
T Consensus 253 ~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 253 NLQSLVEINLAHN-NLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp TCTTCCEEECTTS-CCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred CCCCCCEEECCCC-CCCccChhHhccccCCCEEEcCCCC
Confidence 6777777777776 3444442 1 1446666666544
No 59
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.81 E-value=1.8e-19 Score=187.12 Aligned_cols=234 Identities=19% Similarity=0.249 Sum_probs=191.9
Q ss_pred CCCceeeecCCCCCCCCCCCCcccCccchhhhHHHHhccCCCCcEEeccCCCCC--cccCCCCCCCCCCCEEeccCCCCC
Q 047161 456 APNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKIL--VRLPSTINGWKSLRTVNLSRCSKL 533 (720)
Q Consensus 456 l~~L~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~--~~lp~~i~~l~~L~~L~L~~~~~l 533 (720)
.++|++|+|++|. +..+|... ++.+++|++|++++|.+. +..|..+..+++|++|++++|. +
T Consensus 27 ~~~l~~L~L~~n~-------l~~i~~~~--------~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~-i 90 (306)
T 2z66_A 27 PSSATRLELESNK-------LQSLPHGV--------FDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG-V 90 (306)
T ss_dssp CTTCCEEECCSSC-------CCCCCTTT--------TTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCS-E
T ss_pred CCCCCEEECCCCc-------cCccCHhH--------hhccccCCEEECCCCccCcccCcccccccccccCEEECCCCc-c
Confidence 4689999999997 67788764 688999999999999854 2236677789999999999985 5
Q ss_pred cccCcCcCCCCCCCEEeccCcccccCCc-cccCCcCCceEEEeecCCCCCCCCCcccccccccccccCCCCcccc-cCCC
Q 047161 534 ENMPESLGQMESLEELDVSGTVIRQPVP-SIFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMAL-MLPS 611 (720)
Q Consensus 534 ~~lp~~~~~L~~L~~L~L~~n~l~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~-~~~~ 611 (720)
..+|..+..+++|++|++++|.+.+.++ ..+..+++|+.|++++|.+....+..+..+..++.+.+..+..... ....
T Consensus 91 ~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 170 (306)
T 2z66_A 91 ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI 170 (306)
T ss_dssp EEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSC
T ss_pred ccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhH
Confidence 5688889999999999999999999876 4555569999999999999988888899999999999998877663 3445
Q ss_pred CCCCCCCCcccccEEECCCCCCccc-cccccCCCCCceeeccccccccccCCcc----cccceEeeecCcccccchhhcc
Q 047161 612 LSGLCSLTELNLKKLNLRRNNFVSL-RGTINHLPKFKHLKLDDCKRLRSLSELP----SDIKKVRVHGCTSLATISDALR 686 (720)
Q Consensus 612 l~~l~~L~~L~L~~L~Ls~n~l~~l-p~~i~~l~~L~~L~L~~c~~L~~lp~lp----~~L~~L~l~~c~~L~~lp~~~~ 686 (720)
+..+++| +.|++++|.++.+ |..+..+++|+.|++++|. +..++..+ ++|+.|++++|.-....|..+.
T Consensus 171 ~~~l~~L-----~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 244 (306)
T 2z66_A 171 FTELRNL-----TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN-FFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQ 244 (306)
T ss_dssp CTTCTTC-----CEEECTTSCCCEECTTTTTTCTTCCEEECTTSC-CSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCC
T ss_pred HhhCcCC-----CEEECCCCCcCCcCHHHhcCCCCCCEEECCCCc-cCccChhhccCcccCCEeECCCCCCcccCHHHHH
Confidence 7888876 7889999999987 6788999999999999995 55555422 6799999999987777778888
Q ss_pred Cch-hHhhhhhhcc---c--c-hhHHHHHhhc
Q 047161 687 SCN-SATSRIFCIN---C--P-KLILNWLQQY 711 (720)
Q Consensus 687 ~~~-~L~~l~~~~n---c--~-~l~~~w~~~~ 711 (720)
.++ +|+.+++..| | + .....|+...
T Consensus 245 ~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~ 276 (306)
T 2z66_A 245 HFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQ 276 (306)
T ss_dssp CCCTTCCEEECTTCCEECSGGGHHHHHHHHHT
T ss_pred hhhccCCEEEccCCCeecccChHHHHHHHHhh
Confidence 884 8999888776 3 3 2346788653
No 60
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.81 E-value=1.7e-19 Score=204.29 Aligned_cols=86 Identities=21% Similarity=0.182 Sum_probs=40.6
Q ss_pred hccCCCCcEEeccCCCCCc-ccCCCCCCCCCCCEEeccCCCCCcccCcCcCCCCCC----CEEeccCcccccCCccccCC
Q 047161 492 IELLTGLVFLNLNDCKILV-RLPSTINGWKSLRTVNLSRCSKLENMPESLGQMESL----EELDVSGTVIRQPVPSIFFP 566 (720)
Q Consensus 492 i~~l~~L~~L~Ls~n~~~~-~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~L~~L----~~L~L~~n~l~~~~~~~~~~ 566 (720)
++.+++|++|++++|.+.+ .+|..++++++|++|++++|.+.+..|..++.+++| +.|++++|.+.+.++..+..
T Consensus 120 ~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~ 199 (570)
T 2z63_A 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE 199 (570)
T ss_dssp CTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTT
T ss_pred ccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhcc
Confidence 4445555555555554332 244455555555555555544433333444444444 45555555555544444443
Q ss_pred cCCceEEEeecC
Q 047161 567 SRILKVYLFVDT 578 (720)
Q Consensus 567 ~~~L~~L~l~~~ 578 (720)
.+|+.|++.+|
T Consensus 200 -~~L~~L~l~~n 210 (570)
T 2z63_A 200 -IRLHKLTLRNN 210 (570)
T ss_dssp -CEEEEEEEESC
T ss_pred -CcceeEecccc
Confidence 24555554443
No 61
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.81 E-value=7.6e-19 Score=192.80 Aligned_cols=220 Identities=17% Similarity=0.122 Sum_probs=133.9
Q ss_pred cceEEEecCCCCCCCCCCCCCCcceEeeCCCCchhHHhhhccCccccCCCCCCCCceeeecCCCCCCCCCCCCcccCccc
Q 047161 404 ELRLLQWHGYPLKSLPSSMEMDKTLECNMCYRRIEQFWKGIKNLIRTPDFTGAPNLEELILDGCKRLQNCTSLTTLPREI 483 (720)
Q Consensus 404 ~l~~L~~~~~~~~~lp~~~~~~~l~~L~l~~~~i~~l~~~~~~l~~~~~~~~l~~L~~L~L~~~~~l~~~~~L~~lp~~~ 483 (720)
....++..+..+..+|..+. .+++.|++++|++..+. ...|..+++|++|+|++|. +..++...
T Consensus 55 ~~~~v~c~~~~l~~iP~~~~-~~l~~L~L~~n~i~~~~--------~~~~~~l~~L~~L~Ls~n~-------i~~~~~~~ 118 (452)
T 3zyi_A 55 QFSKVVCTRRGLSEVPQGIP-SNTRYLNLMENNIQMIQ--------ADTFRHLHHLEVLQLGRNS-------IRQIEVGA 118 (452)
T ss_dssp SSCEEECCSSCCSSCCSCCC-TTCSEEECCSSCCCEEC--------TTTTTTCTTCCEEECCSSC-------CCEECTTT
T ss_pred CCcEEEECCCCcCccCCCCC-CCccEEECcCCcCceEC--------HHHcCCCCCCCEEECCCCc-------cCCcChhh
Confidence 34567777888888887654 56777777777765432 2346777778888887776 45555332
Q ss_pred hhhhHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCCCcccCcCcCCCCCCCEEeccCc-ccccCCcc
Q 047161 484 ATESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMPESLGQMESLEELDVSGT-VIRQPVPS 562 (720)
Q Consensus 484 ~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~L~~n-~l~~~~~~ 562 (720)
+..+++|++|+|++|.+....+..++++++|++|+|++|.+....+..+.++++|++|++++| .+..+++.
T Consensus 119 --------~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~ 190 (452)
T 3zyi_A 119 --------FNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEG 190 (452)
T ss_dssp --------TTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTT
T ss_pred --------ccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChh
Confidence 667777888888877754444445777778888888777655433446777778888888773 45555555
Q ss_pred ccCCcCCceEEEeecCCCCCCCCCcccccccccccccCCCCcccccCCCCCCCCCCCcccccEEECCCCCCccc-ccccc
Q 047161 563 IFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSLSGLCSLTELNLKKLNLRRNNFVSL-RGTIN 641 (720)
Q Consensus 563 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~L~Ls~n~l~~l-p~~i~ 641 (720)
.+..+++|+.|++++|.+..++ .+..+..|+.++++.+.........+.++++| +.|+|++|.++.+ |..+.
T Consensus 191 ~~~~l~~L~~L~L~~n~l~~~~--~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L-----~~L~L~~n~l~~~~~~~~~ 263 (452)
T 3zyi_A 191 AFEGLFNLKYLNLGMCNIKDMP--NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSL-----KKLWVMNSQVSLIERNAFD 263 (452)
T ss_dssp TTTTCTTCCEEECTTSCCSSCC--CCTTCTTCCEEECTTSCCSEECGGGGTTCTTC-----CEEECTTSCCCEECTTTTT
T ss_pred hccCCCCCCEEECCCCcccccc--cccccccccEEECcCCcCcccCcccccCccCC-----CEEEeCCCcCceECHHHhc
Confidence 5555577777777777665542 24444455555555444444333334444443 4444555555443 23444
Q ss_pred CCCCCceeecccc
Q 047161 642 HLPKFKHLKLDDC 654 (720)
Q Consensus 642 ~l~~L~~L~L~~c 654 (720)
++++|+.|+|++|
T Consensus 264 ~l~~L~~L~L~~N 276 (452)
T 3zyi_A 264 GLASLVELNLAHN 276 (452)
T ss_dssp TCTTCCEEECCSS
T ss_pred CCCCCCEEECCCC
Confidence 5555555555555
No 62
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.80 E-value=2.7e-19 Score=189.78 Aligned_cols=273 Identities=17% Similarity=0.215 Sum_probs=199.2
Q ss_pred EEEecCCCCCCCCCCCCCCcceEeeCCCCchhHHhhhccCccccCCCCCCCCceeeecCCCCCCCCCCCCcccCccchhh
Q 047161 407 LLQWHGYPLKSLPSSMEMDKTLECNMCYRRIEQFWKGIKNLIRTPDFTGAPNLEELILDGCKRLQNCTSLTTLPREIATE 486 (720)
Q Consensus 407 ~L~~~~~~~~~lp~~~~~~~l~~L~l~~~~i~~l~~~~~~l~~~~~~~~l~~L~~L~L~~~~~l~~~~~L~~lp~~~~~~ 486 (720)
..+.+++.++.+|..+. .++++|+++++.+..+.. ..|..+++|++|++++|. +..++...
T Consensus 35 ~c~~~~~~l~~iP~~~~-~~L~~L~l~~n~i~~~~~--------~~~~~l~~L~~L~L~~n~-------l~~~~~~~--- 95 (353)
T 2z80_A 35 ICKGSSGSLNSIPSGLT-EAVKSLDLSNNRITYISN--------SDLQRCVNLQALVLTSNG-------INTIEEDS--- 95 (353)
T ss_dssp EEECCSTTCSSCCTTCC-TTCCEEECTTSCCCEECT--------TTTTTCTTCCEEECTTSC-------CCEECTTT---
T ss_pred EeeCCCCCccccccccc-ccCcEEECCCCcCcccCH--------HHhccCCCCCEEECCCCc-------cCccCHhh---
Confidence 47788899999998765 488899999888765422 248889999999999987 56665432
Q ss_pred hHHHHhccCCCCcEEeccCCCCCcccCCC-CCCCCCCCEEeccCCCCCcccCc--CcCCCCCCCEEeccCc-ccccCCcc
Q 047161 487 SLQKLIELLTGLVFLNLNDCKILVRLPST-INGWKSLRTVNLSRCSKLENMPE--SLGQMESLEELDVSGT-VIRQPVPS 562 (720)
Q Consensus 487 ~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~-i~~l~~L~~L~L~~~~~l~~lp~--~~~~L~~L~~L~L~~n-~l~~~~~~ 562 (720)
++.+++|++|++++|.+. .+|.. ++++++|++|++++|.+. .+|. .+.++++|++|++++| .+...++.
T Consensus 96 -----~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~ 168 (353)
T 2z80_A 96 -----FSSLGSLEHLDLSYNYLS-NLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRK 168 (353)
T ss_dssp -----TTTCTTCCEEECCSSCCS-SCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTT
T ss_pred -----cCCCCCCCEEECCCCcCC-cCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHH
Confidence 788999999999999854 55554 788999999999998644 5665 6889999999999998 47777776
Q ss_pred ccCCcCCceEEEeecCCCCCCCCCcccccccccccccCCCCcccccCCCCCCCCCCCcccccEEECCCCCCcccc-ccc-
Q 047161 563 IFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSLSGLCSLTELNLKKLNLRRNNFVSLR-GTI- 640 (720)
Q Consensus 563 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~L~Ls~n~l~~lp-~~i- 640 (720)
.+..+++|+.|++++|.+....+..+..+..++.+++..+.........+..+++| +.|++++|.++.++ ..+
T Consensus 169 ~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L-----~~L~L~~n~l~~~~~~~l~ 243 (353)
T 2z80_A 169 DFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSV-----ECLELRDTDLDTFHFSELS 243 (353)
T ss_dssp TTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTE-----EEEEEESCBCTTCCCC---
T ss_pred HccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccc-----cEEECCCCccccccccccc
Confidence 66666899999999998888888888888888888887766432221113334544 77788888877654 222
Q ss_pred --cCCCCCceeecccccc----ccccCC---cccccceEeeecCcccccchhh-ccCchhHhhhhhhcc-----cchh--
Q 047161 641 --NHLPKFKHLKLDDCKR----LRSLSE---LPSDIKKVRVHGCTSLATISDA-LRSCNSATSRIFCIN-----CPKL-- 703 (720)
Q Consensus 641 --~~l~~L~~L~L~~c~~----L~~lp~---lp~~L~~L~l~~c~~L~~lp~~-~~~~~~L~~l~~~~n-----c~~l-- 703 (720)
...+.++.++++++.- +..+|. -.++|+.|++++|. ++.+|.. +.++++|+.+++..| ||.+
T Consensus 244 ~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~~l~~ 322 (353)
T 2z80_A 244 TGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQ-LKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDY 322 (353)
T ss_dssp ---CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCBCCCHHHHHH
T ss_pred cccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCC-CCccCHHHHhcCCCCCEEEeeCCCccCcCCCcHH
Confidence 3456777788877641 112332 11579999999974 7789977 488999999888776 5544
Q ss_pred HHHHHhhc
Q 047161 704 ILNWLQQY 711 (720)
Q Consensus 704 ~~~w~~~~ 711 (720)
+..|+...
T Consensus 323 l~~~~~~~ 330 (353)
T 2z80_A 323 LSRWLNKN 330 (353)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHhc
Confidence 46787653
No 63
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.79 E-value=4.4e-18 Score=174.66 Aligned_cols=201 Identities=16% Similarity=0.221 Sum_probs=157.6
Q ss_pred CCCCceeeecCCCCCCCCCCCCcccCccchhhhHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCCCc
Q 047161 455 GAPNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLE 534 (720)
Q Consensus 455 ~l~~L~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~l~ 534 (720)
-.++|++|++++|. +..++... +..+++|++|++++|.+.+..|..++++++|++|++++|..++
T Consensus 30 ~~~~l~~L~l~~n~-------i~~~~~~~--------~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~ 94 (285)
T 1ozn_A 30 IPAASQRIFLHGNR-------ISHVPAAS--------FRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLR 94 (285)
T ss_dssp CCTTCSEEECTTSC-------CCEECTTT--------TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCC
T ss_pred CCCCceEEEeeCCc-------CCccCHHH--------cccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCcc
Confidence 35789999999987 57777543 7889999999999998766668899999999999999997455
Q ss_pred cc-CcCcCCCCCCCEEeccCcccccCCccccCCcCCceEEEeecCCCCCCCCCcccccccccccccCCCCcccccCCCCC
Q 047161 535 NM-PESLGQMESLEELDVSGTVIRQPVPSIFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSLS 613 (720)
Q Consensus 535 ~l-p~~~~~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~l~ 613 (720)
.+ |..+..+++|++|++++|.+.+.++..+..+++|+.|++++|.+..+.+..+..+..++.+++..+.........+.
T Consensus 95 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 174 (285)
T 1ozn_A 95 SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFR 174 (285)
T ss_dssp CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTT
T ss_pred ccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhc
Confidence 55 77899999999999999999999888777779999999999988888777777788888888877766554444466
Q ss_pred CCCCCCcccccEEECCCCCCccc-cccccCCCCCceeeccccccccccCC--c--ccccceEeeecCc
Q 047161 614 GLCSLTELNLKKLNLRRNNFVSL-RGTINHLPKFKHLKLDDCKRLRSLSE--L--PSDIKKVRVHGCT 676 (720)
Q Consensus 614 ~l~~L~~L~L~~L~Ls~n~l~~l-p~~i~~l~~L~~L~L~~c~~L~~lp~--l--p~~L~~L~l~~c~ 676 (720)
++++| +.|++++|.++.+ |.++..+++|+.|++++|. +..+|. + .++|+.|++++++
T Consensus 175 ~l~~L-----~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 175 GLHSL-----DRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANN-LSALPTEALAPLRALQYLRLNDNP 236 (285)
T ss_dssp TCTTC-----CEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CSCCCHHHHTTCTTCCEEECCSSC
T ss_pred Ccccc-----CEEECCCCcccccCHhHccCcccccEeeCCCCc-CCcCCHHHcccCcccCEEeccCCC
Confidence 66665 6777788877765 6677778888888888873 444432 1 1457777777665
No 64
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.79 E-value=1.1e-18 Score=177.61 Aligned_cols=213 Identities=12% Similarity=0.140 Sum_probs=142.3
Q ss_pred CCCCCCceeeecCCCCCCCCCCCCcccCccchhhhHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCC
Q 047161 453 FTGAPNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSK 532 (720)
Q Consensus 453 ~~~l~~L~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~ 532 (720)
+..+++|+.|++++|. +..++. ++.+++|++|++++|.+. .+| .++++++|++|++++|.+
T Consensus 37 ~~~l~~L~~L~l~~~~-------i~~~~~----------l~~l~~L~~L~l~~n~l~-~~~-~l~~l~~L~~L~L~~n~l 97 (272)
T 3rfs_A 37 QNELNSIDQIIANNSD-------IKSVQG----------IQYLPNVRYLALGGNKLH-DIS-ALKELTNLTYLILTGNQL 97 (272)
T ss_dssp HHHHTTCCEEECTTSC-------CCCCTT----------GGGCTTCCEEECTTSCCC-CCG-GGTTCTTCCEEECTTSCC
T ss_pred cccccceeeeeeCCCC-------cccccc----------cccCCCCcEEECCCCCCC-Cch-hhcCCCCCCEEECCCCcc
Confidence 4455666677776665 333332 556667777777766633 233 566667777777776655
Q ss_pred CcccCcCcCCCCCCCEEeccCcccccCCccccCCcCCceEEEeecCCCCCCCCCcccccccccccccCCCCcccccCCCC
Q 047161 533 LENMPESLGQMESLEELDVSGTVIRQPVPSIFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSL 612 (720)
Q Consensus 533 l~~lp~~~~~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~l 612 (720)
.+..|..++++++|++|++++|.+.+.++..+..+++|+.|++++|.+..+.+..+..+..|+.+++..+.........+
T Consensus 98 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 177 (272)
T 3rfs_A 98 QSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVF 177 (272)
T ss_dssp CCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred CccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHh
Confidence 44444446666777777777777666666655555667777777666666666666666666666666666554444446
Q ss_pred CCCCCCCcccccEEECCCCCCccccc-cccCCCCCceeeccccccccccCCcccccceEeeecCcccccchhhccCchhH
Q 047161 613 SGLCSLTELNLKKLNLRRNNFVSLRG-TINHLPKFKHLKLDDCKRLRSLSELPSDIKKVRVHGCTSLATISDALRSCNSA 691 (720)
Q Consensus 613 ~~l~~L~~L~L~~L~Ls~n~l~~lp~-~i~~l~~L~~L~L~~c~~L~~lp~lp~~L~~L~l~~c~~L~~lp~~~~~~~~L 691 (720)
..+++| +.|++++|.++.+|. .+..+++|+.|++++|+.. .-.+.|+.|.+..+..-+.+|.++..++..
T Consensus 178 ~~l~~L-----~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~----~~~~~l~~l~~~~n~~~g~ip~~~~~~~~~ 248 (272)
T 3rfs_A 178 DKLTQL-----KDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD----CTCPGIRYLSEWINKHSGVVRNSAGSVAPD 248 (272)
T ss_dssp TTCTTC-----CEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC----CCTTTTHHHHHHHHHTGGGBBCTTSCBCGG
T ss_pred cCCccC-----CEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcc----ccCcHHHHHHHHHHhCCCcccCcccccCCC
Confidence 777766 788899999998774 4688999999999999733 333468888888877778888888776654
Q ss_pred hh
Q 047161 692 TS 693 (720)
Q Consensus 692 ~~ 693 (720)
..
T Consensus 249 ~~ 250 (272)
T 3rfs_A 249 SA 250 (272)
T ss_dssp GS
T ss_pred CC
Confidence 43
No 65
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.79 E-value=3.8e-19 Score=204.07 Aligned_cols=209 Identities=20% Similarity=0.257 Sum_probs=146.7
Q ss_pred CCCCcEEeccCCCCC--cccCCCCCCCCCCCEEeccCCCCCcccCcCcCCCCCCCEEeccCcccccCC-ccccCCcCCce
Q 047161 495 LTGLVFLNLNDCKIL--VRLPSTINGWKSLRTVNLSRCSKLENMPESLGQMESLEELDVSGTVIRQPV-PSIFFPSRILK 571 (720)
Q Consensus 495 l~~L~~L~Ls~n~~~--~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~L~~n~l~~~~-~~~~~~~~~L~ 571 (720)
+++|++|++++|.+. +..|..+..+.+|++|+++.|. ....+..+..+++|+.+++.++...... ...+..+.+++
T Consensus 370 l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~-~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~ 448 (635)
T 4g8a_A 370 LPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNG-VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLI 448 (635)
T ss_dssp CTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCS-EEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCC
T ss_pred ccccccchhhccccccccccccchhhhhhhhhhhccccc-cccccccccccccccchhhhhccccccccccccccccccc
Confidence 445555555555432 1223333445555555555543 2334556777888888888877665543 34455568888
Q ss_pred EEEeecCCCCCCCCCcccccccccccccCCCCcccccCC-CCCCCCCCCcccccEEECCCCCCccc-cccccCCCCCcee
Q 047161 572 VYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLP-SLSGLCSLTELNLKKLNLRRNNFVSL-RGTINHLPKFKHL 649 (720)
Q Consensus 572 ~L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~-~l~~l~~L~~L~L~~L~Ls~n~l~~l-p~~i~~l~~L~~L 649 (720)
.++++.|.+....+..+..+..++.+.+..++......+ .+..+++| +.|+|++|+++.+ |..+.++++|+.|
T Consensus 449 ~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L-----~~L~Ls~N~L~~l~~~~f~~l~~L~~L 523 (635)
T 4g8a_A 449 YLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL-----TFLDLSQCQLEQLSPTAFNSLSSLQVL 523 (635)
T ss_dssp EEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTC-----CEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred cccccccccccccccccccchhhhhhhhhhcccccccCchhhhhcccc-----CEEECCCCccCCcChHHHcCCCCCCEE
Confidence 999988888888888888889999999888775554444 47777776 7889999999987 5778999999999
Q ss_pred eccccccccccCCcc----cccceEeeecCcccccchhhccCc-hhHhhhhhhcc-----cc-hhHHHHHhh
Q 047161 650 KLDDCKRLRSLSELP----SDIKKVRVHGCTSLATISDALRSC-NSATSRIFCIN-----CP-KLILNWLQQ 710 (720)
Q Consensus 650 ~L~~c~~L~~lp~lp----~~L~~L~l~~c~~L~~lp~~~~~~-~~L~~l~~~~n-----c~-~l~~~w~~~ 710 (720)
+|++| .+..++..+ ++|+.|+++++.-....|..+.++ ++|+.+++..| |. .....|+++
T Consensus 524 ~Ls~N-~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~~~~~~wl~~ 594 (635)
T 4g8a_A 524 NMSHN-NFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKD 594 (635)
T ss_dssp ECTTS-CCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGGGHHHHHHHHH
T ss_pred ECCCC-cCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCCcHHHHHHHHh
Confidence 99999 566666432 579999999987656666778887 67888887665 44 225678865
No 66
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.78 E-value=7.1e-19 Score=194.33 Aligned_cols=189 Identities=11% Similarity=0.026 Sum_probs=110.7
Q ss_pred hccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCCCcccCcCcCCCCCCCEEeccCcccccCCccccCCcCCce
Q 047161 492 IELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMPESLGQMESLEELDVSGTVIRQPVPSIFFPSRILK 571 (720)
Q Consensus 492 i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~ 571 (720)
++.+++|++|+|++|. +..+|. .++|++|++++|.+.+..+. .+++|++|++++|.+.+.++..+..+++|+
T Consensus 76 l~~l~~L~~L~Ls~N~-l~~l~~----~~~L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 147 (487)
T 3oja_A 76 LESLSTLRTLDLNNNY-VQELLV----GPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQ 147 (487)
T ss_dssp CTTCTTCCEEECCSSE-EEEEEE----CTTCCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEE
T ss_pred cccCCCCCEEEecCCc-CCCCCC----CCCcCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCC
Confidence 3344555555555554 222221 14455555555443332221 234455555555555554443333335555
Q ss_pred EEEeecCCCCCCCCCccc-ccccccccccCCCCcccccCCCCCCCCCCCcccccEEECCCCCCccccccccCCCCCceee
Q 047161 572 VYLFVDTRDHRTSSSSWH-LWFPFSLMQKGSSDSMALMLPSLSGLCSLTELNLKKLNLRRNNFVSLRGTINHLPKFKHLK 650 (720)
Q Consensus 572 ~L~l~~~~~~~~~~~~~~-~l~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~ 650 (720)
.|++++|.+.+..+..+. .+..|..++++.|.+... +....+++| +.|+|++|.++.+|..+..+++|+.|+
T Consensus 148 ~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~--~~~~~l~~L-----~~L~Ls~N~l~~~~~~~~~l~~L~~L~ 220 (487)
T 3oja_A 148 YLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV--KGQVVFAKL-----KTLDLSSNKLAFMGPEFQSAAGVTWIS 220 (487)
T ss_dssp EEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE--ECCCCCTTC-----CEEECCSSCCCEECGGGGGGTTCSEEE
T ss_pred EEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc--cccccCCCC-----CEEECCCCCCCCCCHhHcCCCCccEEE
Confidence 555555554444333332 344555555555444333 223345555 788899999999988888999999999
Q ss_pred ccccccccccCCc---ccccceEeeecCccc-ccchhhccCchhHhhhhh
Q 047161 651 LDDCKRLRSLSEL---PSDIKKVRVHGCTSL-ATISDALRSCNSATSRIF 696 (720)
Q Consensus 651 L~~c~~L~~lp~l---p~~L~~L~l~~c~~L-~~lp~~~~~~~~L~~l~~ 696 (720)
|++|. +..+|.. .++|+.|++++|+-. ..+|.++..++.|..+..
T Consensus 221 Ls~N~-l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~ 269 (487)
T 3oja_A 221 LRNNK-LVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAK 269 (487)
T ss_dssp CTTSC-CCEECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHH
T ss_pred ecCCc-CcccchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEec
Confidence 99984 6666642 257899999998866 577888888888887655
No 67
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.77 E-value=4.6e-19 Score=184.88 Aligned_cols=190 Identities=11% Similarity=0.015 Sum_probs=109.0
Q ss_pred hccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCCCcccCcCcCCCCCCCEEeccCcccccCCccccCCcCCce
Q 047161 492 IELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMPESLGQMESLEELDVSGTVIRQPVPSIFFPSRILK 571 (720)
Q Consensus 492 i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~ 571 (720)
+..+++|++|++++|.+ ..+| .+++|++|++++|.+.+..+. .+++|++|++++|.+.+.++..+..+++|+
T Consensus 76 ~~~l~~L~~L~Ls~n~l-~~l~----~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~ 147 (317)
T 3o53_A 76 LESLSTLRTLDLNNNYV-QELL----VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQ 147 (317)
T ss_dssp ETTCTTCCEEECCSSEE-EEEE----ECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEE
T ss_pred hhhcCCCCEEECcCCcc-cccc----CCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCC
Confidence 33444555555555442 2222 124455555555433322221 234455555555555544443333334555
Q ss_pred EEEeecCCCCCCCCCcc-cccccccccccCCCCcccccCCCCCCCCCCCcccccEEECCCCCCccccccccCCCCCceee
Q 047161 572 VYLFVDTRDHRTSSSSW-HLWFPFSLMQKGSSDSMALMLPSLSGLCSLTELNLKKLNLRRNNFVSLRGTINHLPKFKHLK 650 (720)
Q Consensus 572 ~L~l~~~~~~~~~~~~~-~~l~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~ 650 (720)
.|++++|.+....+..+ ..+..++.++++.+..... +....+++| +.|++++|.++.+|..+..+++|+.|+
T Consensus 148 ~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~--~~~~~l~~L-----~~L~Ls~N~l~~l~~~~~~l~~L~~L~ 220 (317)
T 3o53_A 148 YLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV--KGQVVFAKL-----KTLDLSSNKLAFMGPEFQSAAGVTWIS 220 (317)
T ss_dssp EEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE--ECCCCCTTC-----CEEECCSSCCCEECGGGGGGTTCSEEE
T ss_pred EEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc--ccccccccC-----CEEECCCCcCCcchhhhcccCcccEEE
Confidence 55555554444433333 2344445555544443332 222335554 788889999998888888899999999
Q ss_pred ccccccccccCCcc---cccceEeeecCccc-ccchhhccCchhHhhhhhh
Q 047161 651 LDDCKRLRSLSELP---SDIKKVRVHGCTSL-ATISDALRSCNSATSRIFC 697 (720)
Q Consensus 651 L~~c~~L~~lp~lp---~~L~~L~l~~c~~L-~~lp~~~~~~~~L~~l~~~ 697 (720)
+++| .+..+|... ++|+.|++++++-. ..+|.++..++.|+.+...
T Consensus 221 L~~N-~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~ 270 (317)
T 3o53_A 221 LRNN-KLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (317)
T ss_dssp CTTS-CCCEECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHH
T ss_pred CcCC-cccchhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECC
Confidence 9998 466666422 57899999988866 6778888888888886554
No 68
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.77 E-value=4.7e-18 Score=174.53 Aligned_cols=195 Identities=19% Similarity=0.176 Sum_probs=138.8
Q ss_pred ceEEEecCCCCCCCCCCCCCCcceEeeCCCCchhHHhhhccCccccCCCCCCCCceeeecCCCCCCCCCCCCcccCccch
Q 047161 405 LRLLQWHGYPLKSLPSSMEMDKTLECNMCYRRIEQFWKGIKNLIRTPDFTGAPNLEELILDGCKRLQNCTSLTTLPREIA 484 (720)
Q Consensus 405 l~~L~~~~~~~~~lp~~~~~~~l~~L~l~~~~i~~l~~~~~~l~~~~~~~~l~~L~~L~L~~~~~l~~~~~L~~lp~~~~ 484 (720)
++.+++.++.++.+|..+. ..+..|++++|.+..+.. ..|..+++|++|+|++|. +..++.
T Consensus 12 l~~l~~~~~~l~~ip~~~~-~~l~~L~L~~N~l~~~~~--------~~~~~l~~L~~L~L~~n~-------l~~~~~--- 72 (290)
T 1p9a_G 12 HLEVNCDKRNLTALPPDLP-KDTTILHLSENLLYTFSL--------ATLMPYTRLTQLNLDRAE-------LTKLQV--- 72 (290)
T ss_dssp CCEEECTTSCCSSCCSCCC-TTCCEEECTTSCCSEEEG--------GGGTTCTTCCEEECTTSC-------CCEEEC---
T ss_pred ccEEECCCCCCCcCCCCCC-CCCCEEEcCCCcCCccCH--------HHhhcCCCCCEEECCCCc-------cCcccC---
Confidence 5566666666667765543 455666666666543321 236777888888888876 455544
Q ss_pred hhhHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCCCcccCcCcCCCCCCCEEeccCcccccCCcccc
Q 047161 485 TESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMPESLGQMESLEELDVSGTVIRQPVPSIF 564 (720)
Q Consensus 485 ~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~L~~n~l~~~~~~~~ 564 (720)
.+.+++|++|++++|. +..+|..+..+++|++|++++|.+.+..|..|..+++|++|++++|.+.++++..+
T Consensus 73 -------~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 144 (290)
T 1p9a_G 73 -------DGTLPVLGTLDLSHNQ-LQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLL 144 (290)
T ss_dssp -------CSCCTTCCEEECCSSC-CSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTT
T ss_pred -------CCCCCcCCEEECCCCc-CCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhc
Confidence 3457788888888887 45778878888888888888876555444668888888888888888888887776
Q ss_pred CCcCCceEEEeecCCCCCCCCCcccccccccccccCCCCcccccCCCCCCCCCCCcccccEEECCCCCCccccccccCCC
Q 047161 565 FPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSLSGLCSLTELNLKKLNLRRNNFVSLRGTINHLP 644 (720)
Q Consensus 565 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~L~Ls~n~l~~lp~~i~~l~ 644 (720)
..+++|+.|++++|.+..+++. .+..+++| +.|+|++|.++.+|..+..++
T Consensus 145 ~~l~~L~~L~L~~N~l~~l~~~------------------------~~~~l~~L-----~~L~L~~N~l~~ip~~~~~~~ 195 (290)
T 1p9a_G 145 TPTPKLEKLSLANNNLTELPAG------------------------LLNGLENL-----DTLLLQENSLYTIPKGFFGSH 195 (290)
T ss_dssp TTCTTCCEEECTTSCCSCCCTT------------------------TTTTCTTC-----CEEECCSSCCCCCCTTTTTTC
T ss_pred ccccCCCEEECCCCcCCccCHH------------------------HhcCcCCC-----CEEECCCCcCCccChhhcccc
Confidence 6667888888866655443322 24455555 778889999999998888888
Q ss_pred CCceeeccccc
Q 047161 645 KFKHLKLDDCK 655 (720)
Q Consensus 645 ~L~~L~L~~c~ 655 (720)
+|+.|+|++|+
T Consensus 196 ~L~~l~L~~Np 206 (290)
T 1p9a_G 196 LLPFAFLHGNP 206 (290)
T ss_dssp CCSEEECCSCC
T ss_pred cCCeEEeCCCC
Confidence 99999999876
No 69
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.77 E-value=9.7e-18 Score=171.18 Aligned_cols=217 Identities=16% Similarity=0.206 Sum_probs=140.0
Q ss_pred EecCCCCCCCCCCCCCCcceEeeCCCCchhHHhhhccCccccCCCCCCCCceeeecCCCCCCCCCCCCcccCccchhhhH
Q 047161 409 QWHGYPLKSLPSSMEMDKTLECNMCYRRIEQFWKGIKNLIRTPDFTGAPNLEELILDGCKRLQNCTSLTTLPREIATESL 488 (720)
Q Consensus 409 ~~~~~~~~~lp~~~~~~~l~~L~l~~~~i~~l~~~~~~l~~~~~~~~l~~L~~L~L~~~~~l~~~~~L~~lp~~~~~~~l 488 (720)
+..+..+..+|..+. ..+++|+++++.+..+.. ..|..+++|++|++++|. +..++...
T Consensus 13 ~c~~~~l~~ip~~l~-~~l~~L~ls~n~l~~~~~--------~~~~~l~~L~~L~l~~n~-------l~~~~~~~----- 71 (276)
T 2z62_A 13 QCMELNFYKIPDNLP-FSTKNLDLSFNPLRHLGS--------YSFFSFPELQVLDLSRCE-------IQTIEDGA----- 71 (276)
T ss_dssp ECTTSCCSSCCSSSC-TTCCEEECTTCCCCEECT--------TTTTTCTTCSEEECTTCC-------CCEECTTT-----
T ss_pred EecCCCccccCCCCC-CCccEEECCCCcccccCH--------hHhccccCCcEEECCCCc-------CCccCHHH-----
Confidence 334444555565442 356666666665544311 147778888888888886 46665532
Q ss_pred HHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCCCcccCcCcCCCCCCCEEeccCcccccCC-ccccCCc
Q 047161 489 QKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMPESLGQMESLEELDVSGTVIRQPV-PSIFFPS 567 (720)
Q Consensus 489 ~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~L~~n~l~~~~-~~~~~~~ 567 (720)
+..+++|++|++++|.+.+..|..+.++++|++|++++|.+.+..+..++++++|++|++++|.+.+.. +..+..+
T Consensus 72 ---~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l 148 (276)
T 2z62_A 72 ---YQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNL 148 (276)
T ss_dssp ---TTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGC
T ss_pred ---ccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccC
Confidence 777888888888888866666677888888888888888766555556888888888888888887743 4444445
Q ss_pred CCceEEEeecCCCCCCCCCccccccccc----ccccCCCCcccccCCCCCCCCCCCcccccEEECCCCCCcccccc-ccC
Q 047161 568 RILKVYLFVDTRDHRTSSSSWHLWFPFS----LMQKGSSDSMALMLPSLSGLCSLTELNLKKLNLRRNNFVSLRGT-INH 642 (720)
Q Consensus 568 ~~L~~L~l~~~~~~~~~~~~~~~l~~l~----~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~L~Ls~n~l~~lp~~-i~~ 642 (720)
++|+.|++++|.+..+.+..+..+..+. .++++.+.........+.. . +|+.|++++|.++.+|.. +..
T Consensus 149 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~-~-----~L~~L~L~~n~l~~~~~~~~~~ 222 (276)
T 2z62_A 149 TNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-I-----RLKELALDTNQLKSVPDGIFDR 222 (276)
T ss_dssp TTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCS-C-----CEEEEECCSSCCSCCCTTTTTT
T ss_pred CCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCC-C-----cccEEECCCCceeecCHhHhcc
Confidence 8888888888877776666665555554 3444444433222221211 1 346666666666666543 356
Q ss_pred CCCCceeeccccc
Q 047161 643 LPKFKHLKLDDCK 655 (720)
Q Consensus 643 l~~L~~L~L~~c~ 655 (720)
+++|+.|++++|+
T Consensus 223 l~~L~~L~l~~N~ 235 (276)
T 2z62_A 223 LTSLQKIWLHTNP 235 (276)
T ss_dssp CCSCCEEECCSSC
T ss_pred cccccEEEccCCc
Confidence 6666666666664
No 70
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.77 E-value=1.6e-17 Score=168.87 Aligned_cols=201 Identities=20% Similarity=0.252 Sum_probs=144.4
Q ss_pred cccceEEEecCCCCCCCCCCCCCCcceEeeCCCCchhHHhhhccCccccCCCCCCCCceeeecCCCCCCCCCCCCcccCc
Q 047161 402 SDELRLLQWHGYPLKSLPSSMEMDKTLECNMCYRRIEQFWKGIKNLIRTPDFTGAPNLEELILDGCKRLQNCTSLTTLPR 481 (720)
Q Consensus 402 ~~~l~~L~~~~~~~~~lp~~~~~~~l~~L~l~~~~i~~l~~~~~~l~~~~~~~~l~~L~~L~L~~~~~l~~~~~L~~lp~ 481 (720)
....+.++.+++.++.+|..+. ..++.|+++++++..+. ...|..+++|++|+|++|. +..+|.
T Consensus 15 ~~~~~~l~~~~~~l~~ip~~~~-~~l~~L~l~~n~l~~~~--------~~~~~~l~~L~~L~l~~n~-------l~~i~~ 78 (270)
T 2o6q_A 15 NNNKNSVDCSSKKLTAIPSNIP-ADTKKLDLQSNKLSSLP--------SKAFHRLTKLRLLYLNDNK-------LQTLPA 78 (270)
T ss_dssp ETTTTEEECTTSCCSSCCSCCC-TTCSEEECCSSCCSCCC--------TTSSSSCTTCCEEECCSSC-------CSCCCT
T ss_pred CCCCCEEEccCCCCCccCCCCC-CCCCEEECcCCCCCeeC--------HHHhcCCCCCCEEECCCCc-------cCeeCh
Confidence 3445677788888888876553 45667777776654431 1247778888888888876 566666
Q ss_pred cchhhhHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCCCcccCcCcCCCCCCCEEeccCcccccCCc
Q 047161 482 EIATESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMPESLGQMESLEELDVSGTVIRQPVP 561 (720)
Q Consensus 482 ~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~L~~n~l~~~~~ 561 (720)
.. +..+++|++|++++|.+....+..+.++++|++|++++|.+.+..|..++.+++|++|++++|.+.+.++
T Consensus 79 ~~--------~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 150 (270)
T 2o6q_A 79 GI--------FKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPK 150 (270)
T ss_dssp TT--------TSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred hh--------hcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCH
Confidence 53 5678888888888887544444556788888888888887666555667888888888888888888877
Q ss_pred cccCCcCCceEEEeecCCCCCCCCCcccccccccccccCCCCcccccCCCCCCCCCCCcccccEEECCCCCCccccc-cc
Q 047161 562 SIFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSLSGLCSLTELNLKKLNLRRNNFVSLRG-TI 640 (720)
Q Consensus 562 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~L~Ls~n~l~~lp~-~i 640 (720)
..+..+++|+.|++++|.+..+.+ ..+.++++| +.|++++|.++.+|. .+
T Consensus 151 ~~~~~l~~L~~L~L~~n~l~~~~~------------------------~~~~~l~~L-----~~L~L~~N~l~~~~~~~~ 201 (270)
T 2o6q_A 151 GVFDKLTSLKELRLYNNQLKRVPE------------------------GAFDKLTEL-----KTLKLDNNQLKRVPEGAF 201 (270)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCT------------------------TTTTTCTTC-----CEEECCSSCCSCCCTTTT
T ss_pred hHccCCcccceeEecCCcCcEeCh------------------------hHhccCCCc-----CEEECCCCcCCcCCHHHh
Confidence 766666888888887665544322 224555655 788889999988875 47
Q ss_pred cCCCCCceeeccccc
Q 047161 641 NHLPKFKHLKLDDCK 655 (720)
Q Consensus 641 ~~l~~L~~L~L~~c~ 655 (720)
..+++|+.|+|++|+
T Consensus 202 ~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 202 DSLEKLKMLQLQENP 216 (270)
T ss_dssp TTCTTCCEEECCSSC
T ss_pred ccccCCCEEEecCCC
Confidence 788999999999886
No 71
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.76 E-value=7.9e-18 Score=171.86 Aligned_cols=203 Identities=17% Similarity=0.119 Sum_probs=152.7
Q ss_pred CCceeeecCCCCCCCCCCCCcccCccchhhhHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCCCccc
Q 047161 457 PNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENM 536 (720)
Q Consensus 457 ~~L~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~l~~l 536 (720)
++|++|++++|. +..++... +..+++|++|++++|.+.+..+..++++++|++|++++|.+.+..
T Consensus 28 ~~l~~L~ls~n~-------l~~~~~~~--------~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 92 (276)
T 2z62_A 28 FSTKNLDLSFNP-------LRHLGSYS--------FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 92 (276)
T ss_dssp TTCCEEECTTCC-------CCEECTTT--------TTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEEC
T ss_pred CCccEEECCCCc-------ccccCHhH--------hccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccC
Confidence 579999999987 57776532 788999999999999866555668899999999999999877766
Q ss_pred CcCcCCCCCCCEEeccCcccccCCccccCCcCCceEEEeecCCCCCCC-CCcccccccccccccCCCCcccccCCCCCCC
Q 047161 537 PESLGQMESLEELDVSGTVIRQPVPSIFFPSRILKVYLFVDTRDHRTS-SSSWHLWFPFSLMQKGSSDSMALMLPSLSGL 615 (720)
Q Consensus 537 p~~~~~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~l~~l~~l~l~~~~~~~~~~~~l~~l 615 (720)
|..+.++++|++|++++|.+.+.++..+..+++|+.|++++|.+.... +..+..+..++.++++.+.........+..+
T Consensus 93 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 172 (276)
T 2z62_A 93 LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVL 172 (276)
T ss_dssp TTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHH
T ss_pred hhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhh
Confidence 688999999999999999999988866666699999999998887754 6677777777777777776655544445555
Q ss_pred CCCCcccccEEECCCCCCccccccccCCCCCceeeccccccccccCCc----ccccceEeeecCc
Q 047161 616 CSLTELNLKKLNLRRNNFVSLRGTINHLPKFKHLKLDDCKRLRSLSEL----PSDIKKVRVHGCT 676 (720)
Q Consensus 616 ~~L~~L~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~l----p~~L~~L~l~~c~ 676 (720)
++|+.|.+ .|++++|.++.+|.......+|+.|++++|. ++.+|.- .++|+.|++++++
T Consensus 173 ~~L~~l~l-~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 173 HQMPLLNL-SLDLSLNPMNFIQPGAFKEIRLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp HTCTTCCE-EEECCSSCCCEECTTSSCSCCEEEEECCSSC-CSCCCTTTTTTCCSCCEEECCSSC
T ss_pred hhccccce-eeecCCCcccccCccccCCCcccEEECCCCc-eeecCHhHhcccccccEEEccCCc
Confidence 55544432 6777888777776655555577788887774 5555431 1456777776544
No 72
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.76 E-value=2.6e-18 Score=179.13 Aligned_cols=240 Identities=18% Similarity=0.179 Sum_probs=187.9
Q ss_pred eeCCCCchhHHhhhccCccccCCCCCCCCceeeecCCCCCCCCCCCCcccCccchhhhHHHHhccCCCCcEEeccCCCCC
Q 047161 430 CNMCYRRIEQFWKGIKNLIRTPDFTGAPNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKIL 509 (720)
Q Consensus 430 L~l~~~~i~~l~~~~~~l~~~~~~~~l~~L~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~ 509 (720)
.++..+.+....... +..+++|++|+|++|. +..++... ++.+++|++|+|++|.+.
T Consensus 15 ~~ls~~~l~~~~~~~--------~~~~~~L~~L~L~~n~-------l~~~~~~~--------~~~l~~L~~L~Ls~n~l~ 71 (317)
T 3o53_A 15 EKVTDSSLKQALASL--------RQSAWNVKELDLSGNP-------LSQISAAD--------LAPFTKLELLNLSSNVLY 71 (317)
T ss_dssp ESCCTTTHHHHHHHH--------HTTGGGCSEEECTTSC-------CCCCCHHH--------HTTCTTCCEEECTTSCCE
T ss_pred eeccccchhhhHHHH--------hccCCCCCEEECcCCc-------cCcCCHHH--------hhCCCcCCEEECCCCcCC
Confidence 345555555544332 4567899999999997 55555322 889999999999999965
Q ss_pred cccCCCCCCCCCCCEEeccCCCCCcccCcCcCCCCCCCEEeccCcccccCCccccCCcCCceEEEeecCCCCCCCCCccc
Q 047161 510 VRLPSTINGWKSLRTVNLSRCSKLENMPESLGQMESLEELDVSGTVIRQPVPSIFFPSRILKVYLFVDTRDHRTSSSSWH 589 (720)
Q Consensus 510 ~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 589 (720)
+..| ++.+++|++|++++|. +..+| .+++|++|++++|.+.+.++..+ ++|+.|++++|.+..+.+..+.
T Consensus 72 ~~~~--~~~l~~L~~L~Ls~n~-l~~l~----~~~~L~~L~l~~n~l~~~~~~~~---~~L~~L~l~~N~l~~~~~~~~~ 141 (317)
T 3o53_A 72 ETLD--LESLSTLRTLDLNNNY-VQELL----VGPSIETLHAANNNISRVSCSRG---QGKKNIYLANNKITMLRDLDEG 141 (317)
T ss_dssp EEEE--ETTCTTCCEEECCSSE-EEEEE----ECTTCCEEECCSSCCSEEEECCC---SSCEEEECCSSCCCSGGGBCTG
T ss_pred cchh--hhhcCCCCEEECcCCc-ccccc----CCCCcCEEECCCCccCCcCcccc---CCCCEEECCCCCCCCccchhhh
Confidence 5444 8899999999999986 44444 34899999999999999877653 7899999999999999998999
Q ss_pred ccccccccccCCCCcccccCCCC-CCCCCCCcccccEEECCCCCCccccccccCCCCCceeeccccccccccCC-c--cc
Q 047161 590 LWFPFSLMQKGSSDSMALMLPSL-SGLCSLTELNLKKLNLRRNNFVSLRGTINHLPKFKHLKLDDCKRLRSLSE-L--PS 665 (720)
Q Consensus 590 ~l~~l~~l~l~~~~~~~~~~~~l-~~l~~L~~L~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~-l--p~ 665 (720)
.+..++.++++.+.........+ ..+++| +.|++++|.++.+|... .+++|+.|++++|. +..+|. + .+
T Consensus 142 ~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L-----~~L~L~~N~l~~~~~~~-~l~~L~~L~Ls~N~-l~~l~~~~~~l~ 214 (317)
T 3o53_A 142 CRSRVQYLDLKLNEIDTVNFAELAASSDTL-----EHLNLQYNFIYDVKGQV-VFAKLKTLDLSSNK-LAFMGPEFQSAA 214 (317)
T ss_dssp GGSSEEEEECTTSCCCEEEGGGGGGGTTTC-----CEEECTTSCCCEEECCC-CCTTCCEEECCSSC-CCEECGGGGGGT
T ss_pred ccCCCCEEECCCCCCCcccHHHHhhccCcC-----CEEECCCCcCccccccc-ccccCCEEECCCCc-CCcchhhhcccC
Confidence 99999999999988776655554 356665 78999999999887544 58999999999994 556643 2 26
Q ss_pred ccceEeeecCcccccchhhccCchhHhhhhhhcccch--hHHHHHhh
Q 047161 666 DIKKVRVHGCTSLATISDALRSCNSATSRIFCINCPK--LILNWLQQ 710 (720)
Q Consensus 666 ~L~~L~l~~c~~L~~lp~~~~~~~~L~~l~~~~nc~~--l~~~w~~~ 710 (720)
+|+.|++++| .+..+|..+..+++|+.+++..|--. ..+.|+..
T Consensus 215 ~L~~L~L~~N-~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~ 260 (317)
T 3o53_A 215 GVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSK 260 (317)
T ss_dssp TCSEEECTTS-CCCEECTTCCCCTTCCEEECTTCCCBHHHHHHHHHT
T ss_pred cccEEECcCC-cccchhhHhhcCCCCCEEEccCCCccCcCHHHHHhc
Confidence 7999999997 57789999999999999888876322 34555543
No 73
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.75 E-value=5e-17 Score=183.38 Aligned_cols=242 Identities=24% Similarity=0.223 Sum_probs=136.1
Q ss_pred CCcceEEEeccccCCcccCccccceEEEecCCCCCCCCCCCCCCcceEeeCCCCchhHHhhhccCccccCCCCCCCCcee
Q 047161 382 TNLRLLKIHNLQLPAGLESLSDELRLLQWHGYPLKSLPSSMEMDKTLECNMCYRRIEQFWKGIKNLIRTPDFTGAPNLEE 461 (720)
Q Consensus 382 ~~L~~L~l~~~~l~~~~~~l~~~l~~L~~~~~~~~~lp~~~~~~~l~~L~l~~~~i~~l~~~~~~l~~~~~~~~l~~L~~ 461 (720)
++|+.|++++|.+.. +...+..++.|++++|.++.+|. ...++..|++++|.+..+ |. .+++|+.
T Consensus 61 ~~L~~L~L~~N~l~~-lp~~l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~l~~l----------~~--~l~~L~~ 125 (622)
T 3g06_A 61 AHITTLVIPDNNLTS-LPALPPELRTLEVSGNQLTSLPV--LPPGLLELSIFSNPLTHL----------PA--LPSGLCK 125 (622)
T ss_dssp TTCSEEEECSCCCSC-CCCCCTTCCEEEECSCCCSCCCC--CCTTCCEEEECSCCCCCC----------CC--CCTTCCE
T ss_pred CCCcEEEecCCCCCC-CCCcCCCCCEEEcCCCcCCcCCC--CCCCCCEEECcCCcCCCC----------CC--CCCCcCE
Confidence 356667777666542 22244557777777777777666 445666666666655432 22 4556677
Q ss_pred eecCCCCCCCCCCCCcccCccchhhhHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCCCcccCcCcC
Q 047161 462 LILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMPESLG 541 (720)
Q Consensus 462 L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~ 541 (720)
|++++|. +..+|.. +++|++|++++|. +..+|.. +.+|+.|++++|. +..+| .
T Consensus 126 L~L~~N~-------l~~lp~~------------l~~L~~L~Ls~N~-l~~l~~~---~~~L~~L~L~~N~-l~~l~---~ 178 (622)
T 3g06_A 126 LWIFGNQ-------LTSLPVL------------PPGLQELSVSDNQ-LASLPAL---PSELCKLWAYNNQ-LTSLP---M 178 (622)
T ss_dssp EECCSSC-------CSCCCCC------------CTTCCEEECCSSC-CSCCCCC---CTTCCEEECCSSC-CSCCC---C
T ss_pred EECCCCC-------CCcCCCC------------CCCCCEEECcCCc-CCCcCCc---cCCCCEEECCCCC-CCCCc---c
Confidence 7776665 4455543 3566667777665 3345542 3556666666654 33355 3
Q ss_pred CCCCCCEEeccCcccccCCccccCCcCCceEEEeecCCCCCCCCCcccccccccccccCCCCcccccCCCCCCCCCCCcc
Q 047161 542 QMESLEELDVSGTVIRQPVPSIFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSLSGLCSLTEL 621 (720)
Q Consensus 542 ~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L 621 (720)
.+++|+.|++++|.+.+++.. +++|+.|++.+|.+..++.. +.++..++++.|.+... + ..+++|
T Consensus 179 ~~~~L~~L~Ls~N~l~~l~~~----~~~L~~L~L~~N~l~~l~~~----~~~L~~L~Ls~N~L~~l--p--~~l~~L--- 243 (622)
T 3g06_A 179 LPSGLQELSVSDNQLASLPTL----PSELYKLWAYNNRLTSLPAL----PSGLKELIVSGNRLTSL--P--VLPSEL--- 243 (622)
T ss_dssp CCTTCCEEECCSSCCSCCCCC----CTTCCEEECCSSCCSSCCCC----CTTCCEEECCSSCCSCC--C--CCCTTC---
T ss_pred cCCCCcEEECCCCCCCCCCCc----cchhhEEECcCCcccccCCC----CCCCCEEEccCCccCcC--C--CCCCcC---
Confidence 456666666666666665432 25666666666666554421 24455555655544331 1 223333
Q ss_pred cccEEECCCCCCccccccccCCCCCceeeccccccccccCCcc---cccceEeeecCcccccchhhcc
Q 047161 622 NLKKLNLRRNNFVSLRGTINHLPKFKHLKLDDCKRLRSLSELP---SDIKKVRVHGCTSLATISDALR 686 (720)
Q Consensus 622 ~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~lp---~~L~~L~l~~c~~L~~lp~~~~ 686 (720)
+.|+|++|.++.+|. .+++|+.|+|++| .+..+|.-- ++|+.|++++|+--+..|..+.
T Consensus 244 --~~L~Ls~N~L~~lp~---~~~~L~~L~Ls~N-~L~~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~ 305 (622)
T 3g06_A 244 --KELMVSGNRLTSLPM---LPSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNPLSERTLQALR 305 (622)
T ss_dssp --CEEECCSSCCSCCCC---CCTTCCEEECCSS-CCCSCCGGGGGSCTTCEEECCSCCCCHHHHHHHH
T ss_pred --cEEECCCCCCCcCCc---ccccCcEEeCCCC-CCCcCCHHHhhccccCEEEecCCCCCCcCHHHHH
Confidence 566666666666665 4566666777666 344554311 4566666666665555554443
No 74
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.75 E-value=7.2e-20 Score=190.55 Aligned_cols=243 Identities=17% Similarity=0.199 Sum_probs=130.3
Q ss_pred chhccCCcceEEEeccccCCcccCccccceEEEecCCCCCC--CCCCC--------CCCcceEeeCCCCchhHHhhhccC
Q 047161 377 AFLKMTNLRLLKIHNLQLPAGLESLSDELRLLQWHGYPLKS--LPSSM--------EMDKTLECNMCYRRIEQFWKGIKN 446 (720)
Q Consensus 377 ~~~~l~~L~~L~l~~~~l~~~~~~l~~~l~~L~~~~~~~~~--lp~~~--------~~~~l~~L~l~~~~i~~l~~~~~~ 446 (720)
.++.+.+|+.+++++|.+ .....++..++.+++++|.+.. +|..+ ...++++|++++|++...
T Consensus 38 ~~~~~~~L~~l~l~~n~l-~~p~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~------ 110 (312)
T 1wwl_A 38 LYGGGRSLEYLLKRVDTE-ADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGT------ 110 (312)
T ss_dssp EEEEEEECTTHHHHCCTT-CCCHHHHHHHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSC------
T ss_pred EEccCCCceeEeeccccc-ccHHHHHHHHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccch------
Confidence 344555666666666655 2222233345556665555532 33322 244555555555544321
Q ss_pred ccccCCC--CCCCCceeeecCCCCCCCCCCCCcccCccchhhhHHHHhccC-----CCCcEEeccCCCCCcccCCCCCCC
Q 047161 447 LIRTPDF--TGAPNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELL-----TGLVFLNLNDCKILVRLPSTINGW 519 (720)
Q Consensus 447 l~~~~~~--~~l~~L~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l-----~~L~~L~Ls~n~~~~~lp~~i~~l 519 (720)
.+..+ ..+++|++|+|++|. +..+|.. ++.+ ++|++|++++|.+.+..|..++++
T Consensus 111 --~~~~~~~~~l~~L~~L~Ls~N~-------l~~~~~~---------~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l 172 (312)
T 1wwl_A 111 --APPPLLEATGPDLNILNLRNVS-------WATRDAW---------LAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF 172 (312)
T ss_dssp --CCCCSSSCCSCCCSEEEEESCB-------CSSSSSH---------HHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred --hHHHHHHhcCCCccEEEccCCC-------CcchhHH---------HHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence 01112 567777777777766 3444433 3333 677777777777555555677777
Q ss_pred CCCCEEeccCCCCCcc--cCcCc--CCCCCCCEEeccCcccccC---CccccCCcCCceEEEeecCCCCCCCCCcccccc
Q 047161 520 KSLRTVNLSRCSKLEN--MPESL--GQMESLEELDVSGTVIRQP---VPSIFFPSRILKVYLFVDTRDHRTSSSSWHLWF 592 (720)
Q Consensus 520 ~~L~~L~L~~~~~l~~--lp~~~--~~L~~L~~L~L~~n~l~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~ 592 (720)
++|++|++++|.+.+. +|..+ +.+++|++|++++|.+.+. +...+..+++|+.|++++|.+.+..+
T Consensus 173 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~------- 245 (312)
T 1wwl_A 173 PALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAG------- 245 (312)
T ss_dssp SSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCC-------
T ss_pred CCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccc-------
Confidence 7777777777765544 23333 6677777777777777632 22333334677777776666555332
Q ss_pred cccccccCCCCcccccCCCCCCCCCCCcccccEEECCCCCCccccccccCCCCCceeeccccccccccCCcc--cccceE
Q 047161 593 PFSLMQKGSSDSMALMLPSLSGLCSLTELNLKKLNLRRNNFVSLRGTINHLPKFKHLKLDDCKRLRSLSELP--SDIKKV 670 (720)
Q Consensus 593 ~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~lp--~~L~~L 670 (720)
.+.+..+++| +.|++++|.++.+|.++. ++|++|++++| .++.+|.+. ++|+.|
T Consensus 246 ----------------~~~~~~l~~L-----~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N-~l~~~p~~~~l~~L~~L 301 (312)
T 1wwl_A 246 ----------------APSCDWPSQL-----NSLNLSFTGLKQVPKGLP--AKLSVLDLSYN-RLDRNPSPDELPQVGNL 301 (312)
T ss_dssp ----------------CSCCCCCTTC-----CEEECTTSCCSSCCSSCC--SEEEEEECCSS-CCCSCCCTTTSCEEEEE
T ss_pred ----------------hhhhhhcCCC-----CEEECCCCccChhhhhcc--CCceEEECCCC-CCCCChhHhhCCCCCEE
Confidence 1122233333 455556666655555544 55666666655 344444321 345555
Q ss_pred eeecC
Q 047161 671 RVHGC 675 (720)
Q Consensus 671 ~l~~c 675 (720)
+++++
T Consensus 302 ~L~~N 306 (312)
T 1wwl_A 302 SLKGN 306 (312)
T ss_dssp ECTTC
T ss_pred eccCC
Confidence 55543
No 75
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.75 E-value=4.4e-17 Score=165.70 Aligned_cols=175 Identities=17% Similarity=0.193 Sum_probs=107.9
Q ss_pred CCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCCCcccCcCcCCCCCCCEEeccCcccccCCccccCCcCCceEEEe
Q 047161 496 TGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMPESLGQMESLEELDVSGTVIRQPVPSIFFPSRILKVYLF 575 (720)
Q Consensus 496 ~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l 575 (720)
++|+.|++++|.+....|..++++++|++|++++|.+....+..+.++++|++|++++|.+.++++..+..+++|+.|++
T Consensus 37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 116 (270)
T 2o6q_A 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRL 116 (270)
T ss_dssp TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEEC
T ss_pred CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEEC
Confidence 34555555555533333334555555555555555433222223455555555555555555555554444455555555
Q ss_pred ecCCCCCCCCCcccccccccccccCCCCcccccCCCCCCCCCCCcccccEEECCCCCCccccc-cccCCCCCceeecccc
Q 047161 576 VDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSLSGLCSLTELNLKKLNLRRNNFVSLRG-TINHLPKFKHLKLDDC 654 (720)
Q Consensus 576 ~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~L~Ls~n~l~~lp~-~i~~l~~L~~L~L~~c 654 (720)
++|.+..+.+..|..+..|+.+++..+.........+..+++| +.|++++|.++.+|. .+..+++|+.|+|++|
T Consensus 117 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L-----~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N 191 (270)
T 2o6q_A 117 DRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSL-----KELRLYNNQLKRVPEGAFDKLTELKTLKLDNN 191 (270)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC-----CEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred CCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCccc-----ceeEecCCcCcEeChhHhccCCCcCEEECCCC
Confidence 5555555555555555555555555555444433346777776 788999999998875 5789999999999999
Q ss_pred ccccccCC--cc--cccceEeeecCc
Q 047161 655 KRLRSLSE--LP--SDIKKVRVHGCT 676 (720)
Q Consensus 655 ~~L~~lp~--lp--~~L~~L~l~~c~ 676 (720)
.+..+|. +. ++|+.|++.+++
T Consensus 192 -~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 192 -QLKRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp -CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred -cCCcCCHHHhccccCCCEEEecCCC
Confidence 5666664 22 579999998876
No 76
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.74 E-value=1.2e-17 Score=166.69 Aligned_cols=178 Identities=11% Similarity=0.166 Sum_probs=103.7
Q ss_pred CCCCCCceeeecCCCCCCCCCCCCcccCccchhhhHHHHhccCCCCcEEeccC-CCCCcccCCCCCCCCCCCEEeccCCC
Q 047161 453 FTGAPNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLND-CKILVRLPSTINGWKSLRTVNLSRCS 531 (720)
Q Consensus 453 ~~~l~~L~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~-n~~~~~lp~~i~~l~~L~~L~L~~~~ 531 (720)
|..+++|++|++++|..+ +.++... +..+++|++|++++ |.+....|..+.++++|++|++++|.
T Consensus 51 ~~~l~~L~~L~l~~n~~l------~~i~~~~--------f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~ 116 (239)
T 2xwt_C 51 FSNLPNISRIYVSIDVTL------QQLESHS--------FYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTG 116 (239)
T ss_dssp TTTCTTCCEEEEECCSSC------CEECTTT--------EESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEEC
T ss_pred ccCCCCCcEEeCCCCCCc------ceeCHhH--------cCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCC
Confidence 556666677777666422 4555422 55666677777766 55333223455666667777776664
Q ss_pred CCcccCcCcCCCCCCC---EEeccCc-ccccCCccccCCcCCce-EEEeecCCCCCCCCCcccccccccccccCCCCccc
Q 047161 532 KLENMPESLGQMESLE---ELDVSGT-VIRQPVPSIFFPSRILK-VYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMA 606 (720)
Q Consensus 532 ~l~~lp~~~~~L~~L~---~L~L~~n-~l~~~~~~~~~~~~~L~-~L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~ 606 (720)
+. .+|. ++.+++|+ +|++++| .+.++++..+..+++|+ .|++++|.+..++...
T Consensus 117 l~-~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~------------------- 175 (239)
T 2xwt_C 117 LK-MFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYA------------------- 175 (239)
T ss_dssp CC-SCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTT-------------------
T ss_pred Cc-cccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhh-------------------
Confidence 33 3555 66666666 6666666 66666665555556666 6666555444332222
Q ss_pred ccCCCCCCCCCCCcccccEEECCCCC-Ccccc-ccccCC-CCCceeeccccccccccCCc-ccccceEeeecCcc
Q 047161 607 LMLPSLSGLCSLTELNLKKLNLRRNN-FVSLR-GTINHL-PKFKHLKLDDCKRLRSLSEL-PSDIKKVRVHGCTS 677 (720)
Q Consensus 607 ~~~~~l~~l~~L~~L~L~~L~Ls~n~-l~~lp-~~i~~l-~~L~~L~L~~c~~L~~lp~l-p~~L~~L~l~~c~~ 677 (720)
+.. + +|+.|++++|. ++.+| ..+..+ ++|+.|++++| .++.+|.- .++|+.|++.++..
T Consensus 176 -----~~~-~-----~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N-~l~~l~~~~~~~L~~L~l~~~~~ 238 (239)
T 2xwt_C 176 -----FNG-T-----KLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQT-SVTALPSKGLEHLKELIARNTWT 238 (239)
T ss_dssp -----TTT-C-----EEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTC-CCCCCCCTTCTTCSEEECTTC--
T ss_pred -----cCC-C-----CCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCC-ccccCChhHhccCceeeccCccC
Confidence 222 2 34677777773 77765 446667 77777777776 35555532 35677777776654
No 77
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.73 E-value=1.3e-17 Score=191.18 Aligned_cols=149 Identities=20% Similarity=0.227 Sum_probs=115.0
Q ss_pred ccCCcccCccccceEEEecCCCCCCCCC-CC-CCCcceEeeCCCCchhHHhhhccCccccCCCCCCCCceeeecCCCCCC
Q 047161 393 QLPAGLESLSDELRLLQWHGYPLKSLPS-SM-EMDKTLECNMCYRRIEQFWKGIKNLIRTPDFTGAPNLEELILDGCKRL 470 (720)
Q Consensus 393 ~l~~~~~~l~~~l~~L~~~~~~~~~lp~-~~-~~~~l~~L~l~~~~i~~l~~~~~~l~~~~~~~~l~~L~~L~L~~~~~l 470 (720)
.+......+|..++.|++++|.++.+|. .| ...+++.|++++|++..+..+ .|.++++|++|+|++|.
T Consensus 42 ~l~~vP~~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~--------~f~~L~~L~~L~Ls~N~-- 111 (635)
T 4g8a_A 42 NFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDG--------AYQSLSHLSTLILTGNP-- 111 (635)
T ss_dssp CCSSCCSSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTT--------TTTTCTTCCEEECTTCC--
T ss_pred CcCccCCCCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChh--------HhcCCCCCCEEEccCCc--
Confidence 3333334567778999999999998875 44 467889999998887654322 38889999999999987
Q ss_pred CCCCCCcccCccchhhhHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCCCc-ccCcCcCCCCCCCEE
Q 047161 471 QNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLE-NMPESLGQMESLEEL 549 (720)
Q Consensus 471 ~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~l~-~lp~~~~~L~~L~~L 549 (720)
|+.+|... |+.+++|++|+|++|.+.+..|..|+++++|++|++++|.+.. ..|..++.+++|++|
T Consensus 112 -----l~~l~~~~--------f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L 178 (635)
T 4g8a_A 112 -----IQSLALGA--------FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHL 178 (635)
T ss_dssp -----CCEECGGG--------GTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEE
T ss_pred -----CCCCCHHH--------hcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhh
Confidence 67787654 7889999999999998655444568899999999999987654 467788889999999
Q ss_pred eccCcccccCCcccc
Q 047161 550 DVSGTVIRQPVPSIF 564 (720)
Q Consensus 550 ~L~~n~l~~~~~~~~ 564 (720)
++++|.+.+.++..+
T Consensus 179 ~L~~N~l~~~~~~~l 193 (635)
T 4g8a_A 179 DLSSNKIQSIYCTDL 193 (635)
T ss_dssp ECCSSCCCEECGGGG
T ss_pred cccCccccccccccc
Confidence 999998888766544
No 78
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.73 E-value=9.8e-20 Score=189.53 Aligned_cols=177 Identities=15% Similarity=0.154 Sum_probs=108.6
Q ss_pred ccCCCCcEEeccCCCCCcccCCCCCCC-----CCCCEEeccCCCCCcccCcCcCCCCCCCEEeccCcccccC---Cccc-
Q 047161 493 ELLTGLVFLNLNDCKILVRLPSTINGW-----KSLRTVNLSRCSKLENMPESLGQMESLEELDVSGTVIRQP---VPSI- 563 (720)
Q Consensus 493 ~~l~~L~~L~Ls~n~~~~~lp~~i~~l-----~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~L~~n~l~~~---~~~~- 563 (720)
+.+++|++|+|++|.+.+. |..++.+ ++|++|++++|.+.+..|..++++++|++|++++|.+.+. ++..
T Consensus 118 ~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 196 (312)
T 1wwl_A 118 ATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALC 196 (312)
T ss_dssp CCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSC
T ss_pred hcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHH
Confidence 4555666666666553333 5545444 5566666666554444445555566666666666554432 2222
Q ss_pred cCCcCCceEEEeecCCCCCCCCCcccccccccccccCCCCcccccCCCCCCCCCCCcccccEEECCCCCCcccc--cccc
Q 047161 564 FFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSLSGLCSLTELNLKKLNLRRNNFVSLR--GTIN 641 (720)
Q Consensus 564 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~L~Ls~n~l~~lp--~~i~ 641 (720)
+..+++|+.|++++|.+..+. ......+.++++| +.|++++|.++..+ ..+.
T Consensus 197 ~~~l~~L~~L~L~~N~l~~~~---------------------~~~~~~~~~l~~L-----~~L~Ls~N~l~~~~~~~~~~ 250 (312)
T 1wwl_A 197 PLKFPTLQVLALRNAGMETPS---------------------GVCSALAAARVQL-----QGLDLSHNSLRDAAGAPSCD 250 (312)
T ss_dssp TTSCTTCCEEECTTSCCCCHH---------------------HHHHHHHHTTCCC-----SEEECTTSCCCSSCCCSCCC
T ss_pred hccCCCCCEEECCCCcCcchH---------------------HHHHHHHhcCCCC-----CEEECCCCcCCcccchhhhh
Confidence 122355555555444332110 0000012345555 78999999998755 4566
Q ss_pred CCCCCceeeccccccccccCC-cccccceEeeecCcccccchhhccCchhHhhhhhhcc
Q 047161 642 HLPKFKHLKLDDCKRLRSLSE-LPSDIKKVRVHGCTSLATISDALRSCNSATSRIFCIN 699 (720)
Q Consensus 642 ~l~~L~~L~L~~c~~L~~lp~-lp~~L~~L~l~~c~~L~~lp~~~~~~~~L~~l~~~~n 699 (720)
.+++|++|++++|. ++.+|. ++++|++|+++++ .++.+|. +..+++|+.+++.+|
T Consensus 251 ~l~~L~~L~Ls~N~-l~~ip~~~~~~L~~L~Ls~N-~l~~~p~-~~~l~~L~~L~L~~N 306 (312)
T 1wwl_A 251 WPSQLNSLNLSFTG-LKQVPKGLPAKLSVLDLSYN-RLDRNPS-PDELPQVGNLSLKGN 306 (312)
T ss_dssp CCTTCCEEECTTSC-CSSCCSSCCSEEEEEECCSS-CCCSCCC-TTTSCEEEEEECTTC
T ss_pred hcCCCCEEECCCCc-cChhhhhccCCceEEECCCC-CCCCChh-HhhCCCCCEEeccCC
Confidence 78999999999994 667764 4578999999997 4777777 889999999887765
No 79
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.73 E-value=8.5e-17 Score=165.15 Aligned_cols=197 Identities=19% Similarity=0.149 Sum_probs=138.1
Q ss_pred CCCCCCceeeecCCCCCCCCCCCCcccCccchhhhHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCC
Q 047161 453 FTGAPNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSK 532 (720)
Q Consensus 453 ~~~l~~L~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~ 532 (720)
++.+++++.++++++. ++.+|.. + .++|+.|+|++|.+.+..|..+.++++|++|++++|.+
T Consensus 6 ~~~l~~l~~l~~~~~~-------l~~ip~~---------~--~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l 67 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRN-------LTALPPD---------L--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL 67 (290)
T ss_dssp EECSTTCCEEECTTSC-------CSSCCSC---------C--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCC
T ss_pred ccccCCccEEECCCCC-------CCcCCCC---------C--CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCcc
Confidence 4566677777777765 5666665 2 25677777777776555566677777777777777754
Q ss_pred CcccCcCcCCCCCCCEEeccCcccccCCccccCCcCCceEEEeecCCCCCCCCCcccccccccccccCCCCcccccCCCC
Q 047161 533 LENMPESLGQMESLEELDVSGTVIRQPVPSIFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSL 612 (720)
Q Consensus 533 l~~lp~~~~~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~l 612 (720)
. .+|.. +.+++|++|++++|.+..+|...... ++|+.|++++|.+..+++..|..+..|+.+.+..+.+.......+
T Consensus 68 ~-~~~~~-~~l~~L~~L~Ls~N~l~~l~~~~~~l-~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 144 (290)
T 1p9a_G 68 T-KLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTL-PALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLL 144 (290)
T ss_dssp C-EEECC-SCCTTCCEEECCSSCCSSCCCCTTTC-TTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTT
T ss_pred C-cccCC-CCCCcCCEEECCCCcCCcCchhhccC-CCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhc
Confidence 3 34433 67777777777777777666544433 777777777777777777777777777777777766655444446
Q ss_pred CCCCCCCcccccEEECCCCCCcccccc-ccCCCCCceeeccccccccccCCcc---cccceEeeecCc
Q 047161 613 SGLCSLTELNLKKLNLRRNNFVSLRGT-INHLPKFKHLKLDDCKRLRSLSELP---SDIKKVRVHGCT 676 (720)
Q Consensus 613 ~~l~~L~~L~L~~L~Ls~n~l~~lp~~-i~~l~~L~~L~L~~c~~L~~lp~lp---~~L~~L~l~~c~ 676 (720)
..+++| +.|+|++|.++.+|.. +..+++|+.|+|++|+ ++.+|.-. ++|+.|++.+++
T Consensus 145 ~~l~~L-----~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~-l~~ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 145 TPTPKL-----EKLSLANNNLTELPAGLLNGLENLDTLLLQENS-LYTIPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp TTCTTC-----CEEECTTSCCSCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCCCSEEECCSCC
T ss_pred ccccCC-----CEEECCCCcCCccCHHHhcCcCCCCEEECCCCc-CCccChhhcccccCCeEEeCCCC
Confidence 677766 7888999999998854 5789999999999984 66666421 468888888655
No 80
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.73 E-value=4.5e-17 Score=165.79 Aligned_cols=160 Identities=12% Similarity=0.062 Sum_probs=95.4
Q ss_pred hccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCCCcccCcCcCCCCCCCEEeccCcccccCCccccCCcCCce
Q 047161 492 IELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMPESLGQMESLEELDVSGTVIRQPVPSIFFPSRILK 571 (720)
Q Consensus 492 i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~ 571 (720)
++.+++|++|++++|.+.+..|..++++++|++|++++|.+.+..|..++.+++|++|++++|.+.+.++..+..+++|+
T Consensus 81 l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 160 (272)
T 3rfs_A 81 LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLT 160 (272)
T ss_dssp GTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred hcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCC
Confidence 45556666666666654433333455566666666666554443334455566666666666666655555544445666
Q ss_pred EEEeecCCCCCCCCCcccccccccccccCCCCcccccCCCCCCCCCCCcccccEEECCCCCCccccccccCCCCCceeec
Q 047161 572 VYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSLSGLCSLTELNLKKLNLRRNNFVSLRGTINHLPKFKHLKL 651 (720)
Q Consensus 572 ~L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L 651 (720)
.|++++|.+..+.+..+..+..++.+++..+.........+..+++| +.|++++|.+. +.+++|+.|++
T Consensus 161 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L-----~~L~l~~N~~~------~~~~~l~~l~~ 229 (272)
T 3rfs_A 161 ELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSL-----QYIWLHDNPWD------CTCPGIRYLSE 229 (272)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC-----CEEECCSSCBC------CCTTTTHHHHH
T ss_pred EEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCC-----CEEEccCCCcc------ccCcHHHHHHH
Confidence 66666666555555555555666666666555554433346677766 77888888654 45678888888
Q ss_pred cccccccccCC
Q 047161 652 DDCKRLRSLSE 662 (720)
Q Consensus 652 ~~c~~L~~lp~ 662 (720)
..|..-..+|.
T Consensus 230 ~~n~~~g~ip~ 240 (272)
T 3rfs_A 230 WINKHSGVVRN 240 (272)
T ss_dssp HHHHTGGGBBC
T ss_pred HHHhCCCcccC
Confidence 88865555554
No 81
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.73 E-value=1.2e-17 Score=184.52 Aligned_cols=223 Identities=19% Similarity=0.183 Sum_probs=180.5
Q ss_pred CCCCCceeeecCCCCCCCCCCCCcccCccchhhhHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCCC
Q 047161 454 TGAPNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKL 533 (720)
Q Consensus 454 ~~l~~L~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~l 533 (720)
..+++|++|+|++|. +..+++.. ++.+++|++|+|++|.+.+..| ++.+++|++|+|++|. +
T Consensus 31 ~~~~~L~~L~Ls~n~-------l~~~~~~~--------~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~-l 92 (487)
T 3oja_A 31 QSAWNVKELDLSGNP-------LSQISAAD--------LAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNY-V 92 (487)
T ss_dssp TTGGGCCEEECCSSC-------CCCCCGGG--------GTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSE-E
T ss_pred ccCCCccEEEeeCCc-------CCCCCHHH--------HhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCc-C
Confidence 356699999999997 56665432 8899999999999999665555 8999999999999985 4
Q ss_pred cccCcCcCCCCCCCEEeccCcccccCCccccCCcCCceEEEeecCCCCCCCCCcccccccccccccCCCCcccccCCCCC
Q 047161 534 ENMPESLGQMESLEELDVSGTVIRQPVPSIFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSLS 613 (720)
Q Consensus 534 ~~lp~~~~~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~l~ 613 (720)
+.+|. .++|++|++++|.+.+.++..+ ++|+.|++++|.+.+..+..+..+..|..++++.|...+..+..+.
T Consensus 93 ~~l~~----~~~L~~L~L~~N~l~~~~~~~l---~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~ 165 (487)
T 3oja_A 93 QELLV----GPSIETLHAANNNISRVSCSRG---QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELA 165 (487)
T ss_dssp EEEEE----CTTCCEEECCSSCCCCEEECCC---SSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGG
T ss_pred CCCCC----CCCcCEEECcCCcCCCCCcccc---CCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHh
Confidence 44553 3899999999999999887643 7899999999999999999999999999999999988776666654
Q ss_pred -CCCCCCcccccEEECCCCCCccccccccCCCCCceeeccccccccccCC-cc--cccceEeeecCcccccchhhccCch
Q 047161 614 -GLCSLTELNLKKLNLRRNNFVSLRGTINHLPKFKHLKLDDCKRLRSLSE-LP--SDIKKVRVHGCTSLATISDALRSCN 689 (720)
Q Consensus 614 -~l~~L~~L~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~-lp--~~L~~L~l~~c~~L~~lp~~~~~~~ 689 (720)
.+++| +.|+|++|.++.+|.. ..+++|+.|+|++|. +..+|. +. ++|+.|++++|. +..+|..+..++
T Consensus 166 ~~l~~L-----~~L~Ls~N~l~~~~~~-~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~l~~l~ 237 (487)
T 3oja_A 166 ASSDTL-----EHLNLQYNFIYDVKGQ-VVFAKLKTLDLSSNK-LAFMGPEFQSAAGVTWISLRNNK-LVLIEKALRFSQ 237 (487)
T ss_dssp GGTTTC-----CEEECTTSCCCEEECC-CCCTTCCEEECCSSC-CCEECGGGGGGTTCSEEECTTSC-CCEECTTCCCCT
T ss_pred hhCCcc-----cEEecCCCcccccccc-ccCCCCCEEECCCCC-CCCCCHhHcCCCCccEEEecCCc-CcccchhhccCC
Confidence 67766 7889999999988754 469999999999995 555543 22 679999999965 778999999999
Q ss_pred hHhhhhhhcccch--hHHHHHh
Q 047161 690 SATSRIFCINCPK--LILNWLQ 709 (720)
Q Consensus 690 ~L~~l~~~~nc~~--l~~~w~~ 709 (720)
+|+.+++..|.-. ..+.|+.
T Consensus 238 ~L~~L~l~~N~l~c~~~~~~~~ 259 (487)
T 3oja_A 238 NLEHFDLRGNGFHCGTLRDFFS 259 (487)
T ss_dssp TCCEEECTTCCBCHHHHHHHHT
T ss_pred CCCEEEcCCCCCcCcchHHHHH
Confidence 9999888766222 3445554
No 82
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.72 E-value=5.2e-17 Score=161.95 Aligned_cols=191 Identities=17% Similarity=0.196 Sum_probs=139.3
Q ss_pred CCceeeecCCCCCCCCCCCCcccCccchhhhHHHHhccCCCCcEEeccCCCCCcccC-CCCCCCCCCCEEeccC-CCCCc
Q 047161 457 PNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILVRLP-STINGWKSLRTVNLSR-CSKLE 534 (720)
Q Consensus 457 ~~L~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp-~~i~~l~~L~~L~L~~-~~~l~ 534 (720)
++|++|++++|. ++.+|... ++.+++|++|++++|..++.+| ..++++++|++|++++ |.+..
T Consensus 31 ~~l~~L~l~~n~-------l~~i~~~~--------~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~ 95 (239)
T 2xwt_C 31 PSTQTLKLIETH-------LRTIPSHA--------FSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTY 95 (239)
T ss_dssp TTCCEEEEESCC-------CSEECTTT--------TTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCE
T ss_pred CcccEEEEeCCc-------ceEECHHH--------ccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeE
Confidence 378899998887 57777643 7788999999999986344454 4778899999999988 65444
Q ss_pred ccCcCcCCCCCCCEEeccCcccccCCccccCCcCCce---EEEeecC-CCCCCCCCcccccccccccccCCCCcccccCC
Q 047161 535 NMPESLGQMESLEELDVSGTVIRQPVPSIFFPSRILK---VYLFVDT-RDHRTSSSSWHLWFPFSLMQKGSSDSMALMLP 610 (720)
Q Consensus 535 ~lp~~~~~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~---~L~l~~~-~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~ 610 (720)
..|..|..+++|++|++++|.+.++|. +..+++|+ .|++++| .+..++ ..
T Consensus 96 i~~~~f~~l~~L~~L~l~~n~l~~lp~--~~~l~~L~~L~~L~l~~N~~l~~i~------------------------~~ 149 (239)
T 2xwt_C 96 IDPDALKELPLLKFLGIFNTGLKMFPD--LTKVYSTDIFFILEITDNPYMTSIP------------------------VN 149 (239)
T ss_dssp ECTTSEECCTTCCEEEEEEECCCSCCC--CTTCCBCCSEEEEEEESCTTCCEEC------------------------TT
T ss_pred cCHHHhCCCCCCCEEeCCCCCCccccc--cccccccccccEEECCCCcchhhcC------------------------cc
Confidence 334568889999999999998888665 33346776 8888666 443322 22
Q ss_pred CCCCCCCCCccccc-EEECCCCCCccccccccCCCCCceeeccccccccccCC-----cccccceEeeecCcccccchhh
Q 047161 611 SLSGLCSLTELNLK-KLNLRRNNFVSLRGTINHLPKFKHLKLDDCKRLRSLSE-----LPSDIKKVRVHGCTSLATISDA 684 (720)
Q Consensus 611 ~l~~l~~L~~L~L~-~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~-----lp~~L~~L~l~~c~~L~~lp~~ 684 (720)
.+.++++| + .|++++|.++.+|......++|+.|++++|+.++.+|. +.++|+.|+++++ .++.+|..
T Consensus 150 ~~~~l~~L-----~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N-~l~~l~~~ 223 (239)
T 2xwt_C 150 AFQGLCNE-----TLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQT-SVTALPSK 223 (239)
T ss_dssp TTTTTBSS-----EEEEECCSCCCCEECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTC-CCCCCCCT
T ss_pred cccchhcc-----eeEEEcCCCCCcccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCC-ccccCChh
Confidence 35566665 7 89999999999987654458999999999977877763 2157999999985 47788864
Q ss_pred ccCchhHhhhhh
Q 047161 685 LRSCNSATSRIF 696 (720)
Q Consensus 685 ~~~~~~L~~l~~ 696 (720)
.+++|+.|.+
T Consensus 224 --~~~~L~~L~l 233 (239)
T 2xwt_C 224 --GLEHLKELIA 233 (239)
T ss_dssp --TCTTCSEEEC
T ss_pred --HhccCceeec
Confidence 4556666443
No 83
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.71 E-value=2.4e-16 Score=158.29 Aligned_cols=175 Identities=15% Similarity=0.165 Sum_probs=116.0
Q ss_pred CceeeecCCCCCCCCCCCCcccCccchhhhHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCCCcccC
Q 047161 458 NLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMP 537 (720)
Q Consensus 458 ~L~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp 537 (720)
+.++++++++. +..+|.. +. ++|+.|+|++|.+.+..|..++++++|++|+|++|.+.+..|
T Consensus 15 ~~~~l~~~~~~-------l~~~p~~---------~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 76 (251)
T 3m19_A 15 GKKEVDCQGKS-------LDSVPSG---------IP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSA 76 (251)
T ss_dssp GGTEEECTTCC-------CSSCCSC---------CC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCT
T ss_pred CCeEEecCCCC-------ccccCCC---------CC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCH
Confidence 45566666654 4566654 22 466777777776555555566677777777777766555555
Q ss_pred cCcCCCCCCCEEeccCcccccCCccccCCcCCceEEEeecCCCCCCCCCcccccccccccccCCCCcccccCCCCCCCCC
Q 047161 538 ESLGQMESLEELDVSGTVIRQPVPSIFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSLSGLCS 617 (720)
Q Consensus 538 ~~~~~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~l~~l~~ 617 (720)
..+..+++|++|++++|.+.+.++..+..+++|+.|++++|.+..+++..|..+..|+.+++..+.+.......+..+++
T Consensus 77 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 156 (251)
T 3m19_A 77 GVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTN 156 (251)
T ss_dssp TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred hHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcC
Confidence 55666777777777777777666666555567777777766666666666666666666666666555444434666666
Q ss_pred CCcccccEEECCCCCCccccc-cccCCCCCceeeccccc
Q 047161 618 LTELNLKKLNLRRNNFVSLRG-TINHLPKFKHLKLDDCK 655 (720)
Q Consensus 618 L~~L~L~~L~Ls~n~l~~lp~-~i~~l~~L~~L~L~~c~ 655 (720)
| +.|+|++|.++.+|. .+..+++|+.|+|++|+
T Consensus 157 L-----~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 157 L-----QTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp C-----CEEECCSSCCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred C-----CEEECCCCcCCccCHHHHhCCCCCCEEEeeCCc
Confidence 5 678888888887764 67788888888888886
No 84
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.70 E-value=1.1e-16 Score=165.82 Aligned_cols=147 Identities=15% Similarity=0.209 Sum_probs=62.9
Q ss_pred hccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCCCcccCcCcCCCCCCCEEeccCcccccCCccccCCcCCce
Q 047161 492 IELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMPESLGQMESLEELDVSGTVIRQPVPSIFFPSRILK 571 (720)
Q Consensus 492 i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~ 571 (720)
+..+++|++|++++|. +..+| .++.+++|++|++++|.+. .+|. +..+++|++|++++|.+.+.++ +..+++|+
T Consensus 81 ~~~l~~L~~L~L~~n~-l~~~~-~~~~l~~L~~L~l~~n~l~-~~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~ 154 (308)
T 1h6u_A 81 LKNLTKITELELSGNP-LKNVS-AIAGLQSIKTLDLTSTQIT-DVTP-LAGLSNLQVLYLDLNQITNISP--LAGLTNLQ 154 (308)
T ss_dssp GTTCCSCCEEECCSCC-CSCCG-GGTTCTTCCEEECTTSCCC-CCGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCC
T ss_pred HccCCCCCEEEccCCc-CCCch-hhcCCCCCCEEECCCCCCC-Cchh-hcCCCCCCEEECCCCccCcCcc--ccCCCCcc
Confidence 3344555555555554 22232 3444555555555554322 2332 4455555555555555544433 22224555
Q ss_pred EEEeecCCCCCCCCCcccccccccccccCCCCcccccCCCCCCCCCCCcccccEEECCCCCCccccccccCCCCCceeec
Q 047161 572 VYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSLSGLCSLTELNLKKLNLRRNNFVSLRGTINHLPKFKHLKL 651 (720)
Q Consensus 572 ~L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L 651 (720)
.|++++|.+..+.+ +..+..|+.+++..+...... .+..+++| +.|++++|.++.+| .+..+++|+.|++
T Consensus 155 ~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~--~l~~l~~L-----~~L~L~~N~l~~~~-~l~~l~~L~~L~l 224 (308)
T 1h6u_A 155 YLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDIS--PLASLPNL-----IEVHLKNNQISDVS-PLANTSNLFIVTL 224 (308)
T ss_dssp EEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG--GGGGCTTC-----CEEECTTSCCCBCG-GGTTCTTCCEEEE
T ss_pred EEEccCCcCCCChh--hcCCCCCCEEECCCCccCcCh--hhcCCCCC-----CEEEccCCccCccc-cccCCCCCCEEEc
Confidence 55555444444332 344444444444443332211 12333332 34444444444444 2444444444444
Q ss_pred ccc
Q 047161 652 DDC 654 (720)
Q Consensus 652 ~~c 654 (720)
++|
T Consensus 225 ~~N 227 (308)
T 1h6u_A 225 TNQ 227 (308)
T ss_dssp EEE
T ss_pred cCC
Confidence 444
No 85
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.70 E-value=1.4e-16 Score=168.50 Aligned_cols=238 Identities=14% Similarity=0.154 Sum_probs=140.3
Q ss_pred eEEEecCCCCCCCCCCCCCCcceEeeCCCCchhHHhhhccCccccCCCCCCCCceeeecCCCCCCCCCCCCcccCccchh
Q 047161 406 RLLQWHGYPLKSLPSSMEMDKTLECNMCYRRIEQFWKGIKNLIRTPDFTGAPNLEELILDGCKRLQNCTSLTTLPREIAT 485 (720)
Q Consensus 406 ~~L~~~~~~~~~lp~~~~~~~l~~L~l~~~~i~~l~~~~~~l~~~~~~~~l~~L~~L~L~~~~~l~~~~~L~~lp~~~~~ 485 (720)
+.++.+++.++++|..+ ..++++|++++|+++.+..+ .|.++++|++|+|++|..+ +.+|...
T Consensus 12 ~~v~C~~~~Lt~iP~~l-~~~l~~L~Ls~N~i~~i~~~--------~f~~l~~L~~L~Ls~N~i~------~~i~~~~-- 74 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL-PRNAIELRFVLTKLRVIQKG--------AFSGFGDLEKIEISQNDVL------EVIEADV-- 74 (350)
T ss_dssp TEEEEESTTCCSCCTTC-CTTCSEEEEESCCCSEECTT--------SSTTCTTCCEEEEECCTTC------CEECTTS--
T ss_pred CEEEecCCCCCccCcCc-CCCCCEEEccCCcCCCcCHH--------HHcCCCCCCEEECcCCCCC------CccChhH--
Confidence 34556666777777655 24556666666665543221 2677777777777777622 3455433
Q ss_pred hhHHHHhccCCCCcE-EeccCCCCCcccCCCCCCCCCCCEEeccCCCCCcccCcCcCCCCCCCEEeccC-cccccCCccc
Q 047161 486 ESLQKLIELLTGLVF-LNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMPESLGQMESLEELDVSG-TVIRQPVPSI 563 (720)
Q Consensus 486 ~~l~~~i~~l~~L~~-L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~L~~-n~l~~~~~~~ 563 (720)
|.++++|+. +.+++|.+....|..+.++++|++|++++|.+....+..+....++..|++.+ +.+..+++..
T Consensus 75 ------f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~ 148 (350)
T 4ay9_X 75 ------FSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNS 148 (350)
T ss_dssp ------BCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTS
T ss_pred ------hhcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccc
Confidence 556666654 44445554444455667777777777777754443334455556666777754 3555555544
Q ss_pred cCC-cCCceEEEeecCCCCCCCCCcccccccccccccCCCCcccccCC-CCCCCCCCCcccccEEECCCCCCcccccccc
Q 047161 564 FFP-SRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLP-SLSGLCSLTELNLKKLNLRRNNFVSLRGTIN 641 (720)
Q Consensus 564 ~~~-~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~-~l~~l~~L~~L~L~~L~Ls~n~l~~lp~~i~ 641 (720)
+.. ...++.|++++|.+..+.+..|.. ..+..+.+..++......+ .|.++++| +.|+|++|+++.+|..
T Consensus 149 f~~~~~~l~~L~L~~N~i~~i~~~~f~~-~~L~~l~l~~~n~l~~i~~~~f~~l~~L-----~~LdLs~N~l~~lp~~-- 220 (350)
T 4ay9_X 149 FVGLSFESVILWLNKNGIQEIHNSAFNG-TQLDELNLSDNNNLEELPNDVFHGASGP-----VILDISRTRIHSLPSY-- 220 (350)
T ss_dssp STTSBSSCEEEECCSSCCCEECTTSSTT-EEEEEEECTTCTTCCCCCTTTTTTEECC-----SEEECTTSCCCCCCSS--
T ss_pred hhhcchhhhhhccccccccCCChhhccc-cchhHHhhccCCcccCCCHHHhccCccc-----chhhcCCCCcCccChh--
Confidence 333 235677777777777666665543 3455555554333333222 35666655 6677777777777753
Q ss_pred CCCCCceeeccccccccccCCcc--cccceEeeec
Q 047161 642 HLPKFKHLKLDDCKRLRSLSELP--SDIKKVRVHG 674 (720)
Q Consensus 642 ~l~~L~~L~L~~c~~L~~lp~lp--~~L~~L~l~~ 674 (720)
.+.+|+.|.+.+|.+++.+|.+. ++|+.+++.+
T Consensus 221 ~~~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 221 GLENLKKLRARSTYNLKKLPTLEKLVALMEASLTY 255 (350)
T ss_dssp SCTTCCEEECTTCTTCCCCCCTTTCCSCCEEECSC
T ss_pred hhccchHhhhccCCCcCcCCCchhCcChhhCcCCC
Confidence 35666777777777777777654 4566666643
No 86
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.67 E-value=5.7e-16 Score=160.53 Aligned_cols=192 Identities=14% Similarity=0.183 Sum_probs=94.9
Q ss_pred cceEEEecCCCCCCCCCCCCCCcceEeeCCCCchhHHhhhccCccccCCCCCCCCceeeecCCCCCCCCCCCCcccCccc
Q 047161 404 ELRLLQWHGYPLKSLPSSMEMDKTLECNMCYRRIEQFWKGIKNLIRTPDFTGAPNLEELILDGCKRLQNCTSLTTLPREI 483 (720)
Q Consensus 404 ~l~~L~~~~~~~~~lp~~~~~~~l~~L~l~~~~i~~l~~~~~~l~~~~~~~~l~~L~~L~L~~~~~l~~~~~L~~lp~~~ 483 (720)
.++.|++.++.+..+|......+++.|++++|.+..+ +.+..+++|++|++++|. +..++ .
T Consensus 42 ~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~----------~~~~~l~~L~~L~L~~n~-------l~~~~-~- 102 (308)
T 1h6u_A 42 GITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDL----------APLKNLTKITELELSGNP-------LKNVS-A- 102 (308)
T ss_dssp TCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCC----------GGGTTCCSCCEEECCSCC-------CSCCG-G-
T ss_pred CcCEEEeeCCCccCchhhhccCCCCEEEccCCcCCCC----------hhHccCCCCCEEEccCCc-------CCCch-h-
Confidence 3555555555555555333345555555555544322 124555555555555554 23332 1
Q ss_pred hhhhHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCCCcccCcCcCCCCCCCEEeccCcccccCCccc
Q 047161 484 ATESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMPESLGQMESLEELDVSGTVIRQPVPSI 563 (720)
Q Consensus 484 ~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~L~~n~l~~~~~~~ 563 (720)
+..+++|++|++++|.+ ..+|. ++.+++|++|++++|.+. .+|. ++.+++|++|++++|.+.+.++
T Consensus 103 --------~~~l~~L~~L~l~~n~l-~~~~~-l~~l~~L~~L~l~~n~l~-~~~~-l~~l~~L~~L~l~~n~l~~~~~-- 168 (308)
T 1h6u_A 103 --------IAGLQSIKTLDLTSTQI-TDVTP-LAGLSNLQVLYLDLNQIT-NISP-LAGLTNLQYLSIGNAQVSDLTP-- 168 (308)
T ss_dssp --------GTTCTTCCEEECTTSCC-CCCGG-GTTCTTCCEEECCSSCCC-CCGG-GGGCTTCCEEECCSSCCCCCGG--
T ss_pred --------hcCCCCCCEEECCCCCC-CCchh-hcCCCCCCEEECCCCccC-cCcc-ccCCCCccEEEccCCcCCCChh--
Confidence 45555555555555553 23332 555555555555555432 2332 5555555555555555555444
Q ss_pred cCCcCCceEEEeecCCCCCCCCCcccccccccccccCCCCcccccCCCCCCCCCCCcccccEEECCCCCCcccc
Q 047161 564 FFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSLSGLCSLTELNLKKLNLRRNNFVSLR 637 (720)
Q Consensus 564 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~L~Ls~n~l~~lp 637 (720)
+..+++|+.|++++|.+..+.+ +..+..++.+++..+...... .+..+++| +.|++++|.++..|
T Consensus 169 l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L-----~~L~l~~N~i~~~~ 233 (308)
T 1h6u_A 169 LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNL-----FIVTLTNQTITNQP 233 (308)
T ss_dssp GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTC-----CEEEEEEEEEECCC
T ss_pred hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCccc--cccCCCCC-----CEEEccCCeeecCC
Confidence 2223555555555555554433 445555555555555443322 24444444 44445555554444
No 87
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.66 E-value=2.5e-15 Score=150.87 Aligned_cols=179 Identities=18% Similarity=0.190 Sum_probs=109.3
Q ss_pred cceEEEecCCCCCCCCCCCCCCcceEeeCCCCchhHHhhhccCccccCCCCCCCCceeeecCCCCCCCCCCCCcccCccc
Q 047161 404 ELRLLQWHGYPLKSLPSSMEMDKTLECNMCYRRIEQFWKGIKNLIRTPDFTGAPNLEELILDGCKRLQNCTSLTTLPREI 483 (720)
Q Consensus 404 ~l~~L~~~~~~~~~lp~~~~~~~l~~L~l~~~~i~~l~~~~~~l~~~~~~~~l~~L~~L~L~~~~~l~~~~~L~~lp~~~ 483 (720)
..+.++.+++.+..+|..+. ..+..|+++++.+..+.. ..|..+++|++|+|++|. +..++...
T Consensus 15 ~~~~l~~~~~~l~~~p~~~~-~~l~~L~L~~n~l~~~~~--------~~~~~l~~L~~L~L~~n~-------l~~~~~~~ 78 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGIP-ADTEKLDLQSTGLATLSD--------ATFRGLTKLTWLNLDYNQ-------LQTLSAGV 78 (251)
T ss_dssp GGTEEECTTCCCSSCCSCCC-TTCCEEECTTSCCCCCCT--------TTTTTCTTCCEEECTTSC-------CCCCCTTT
T ss_pred CCeEEecCCCCccccCCCCC-CCCCEEEccCCCcCccCH--------hHhcCcccCCEEECCCCc-------CCccCHhH
Confidence 45678888888889887654 456666666666544321 235666667777776665 34444332
Q ss_pred hhhhHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCCCcccCcCcCCCCCCCEEeccCcccccCCccc
Q 047161 484 ATESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMPESLGQMESLEELDVSGTVIRQPVPSI 563 (720)
Q Consensus 484 ~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~L~~n~l~~~~~~~ 563 (720)
+..+++|++|+|++|.+.+..|..++.+++|++|+|++|.+.+..|..+..+++|++|++++|.+.++++..
T Consensus 79 --------~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 150 (251)
T 3m19_A 79 --------FDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGA 150 (251)
T ss_dssp --------TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred --------hccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHH
Confidence 556666777777766654444445566667777777666544333334566666777777777666666655
Q ss_pred cCCcCCceEEEeecCCCCCCCCCcccccccccccccCCCCcccccCCCCCCCCCCCcccccEEECCCCCCcc
Q 047161 564 FFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSLSGLCSLTELNLKKLNLRRNNFVS 635 (720)
Q Consensus 564 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~L~Ls~n~l~~ 635 (720)
+..+++|+.|++++|.+..+. ...+..+++| +.|+|++|.+..
T Consensus 151 ~~~l~~L~~L~L~~N~l~~~~------------------------~~~~~~l~~L-----~~L~l~~N~~~c 193 (251)
T 3m19_A 151 FDKLTNLQTLSLSTNQLQSVP------------------------HGAFDRLGKL-----QTITLFGNQFDC 193 (251)
T ss_dssp TTTCTTCCEEECCSSCCSCCC------------------------TTTTTTCTTC-----CEEECCSCCBCT
T ss_pred cCcCcCCCEEECCCCcCCccC------------------------HHHHhCCCCC-----CEEEeeCCceeC
Confidence 544466666666555444332 2235556655 677888887753
No 88
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.66 E-value=8.7e-16 Score=162.33 Aligned_cols=221 Identities=16% Similarity=0.127 Sum_probs=172.2
Q ss_pred CCCceeeecCCCCCCCCCCCCcccCccchhhhHHHHhccCCCCcEEeccCCCCCcccCC-CCCCCCCCCEE-eccCCCCC
Q 047161 456 APNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILVRLPS-TINGWKSLRTV-NLSRCSKL 533 (720)
Q Consensus 456 l~~L~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~-~i~~l~~L~~L-~L~~~~~l 533 (720)
.+++++|+|++|. |+.+|... |..+++|++|+|++|.+.+.+|. .|.++++|+++ .+++|.+.
T Consensus 29 ~~~l~~L~Ls~N~-------i~~i~~~~--------f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~ 93 (350)
T 4ay9_X 29 PRNAIELRFVLTK-------LRVIQKGA--------FSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLL 93 (350)
T ss_dssp CTTCSEEEEESCC-------CSEECTTS--------STTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCC
T ss_pred CCCCCEEEccCCc-------CCCcCHHH--------HcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCccc
Confidence 3689999999998 78898754 78899999999999997787775 56889998864 55556555
Q ss_pred cccCcCcCCCCCCCEEeccCcccccCCccccCCcCCceEEEeec-CCCCCCCCCcccccc-cccccccCCCCcccccCCC
Q 047161 534 ENMPESLGQMESLEELDVSGTVIRQPVPSIFFPSRILKVYLFVD-TRDHRTSSSSWHLWF-PFSLMQKGSSDSMALMLPS 611 (720)
Q Consensus 534 ~~lp~~~~~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~l~-~l~~l~l~~~~~~~~~~~~ 611 (720)
...|..|..+++|++|++++|.+...++..+.....+..|++.+ +.+..+....|..+. .+..+.+..+.+.......
T Consensus 94 ~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~ 173 (350)
T 4ay9_X 94 YINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSA 173 (350)
T ss_dssp EECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTS
T ss_pred ccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhh
Confidence 55567899999999999999999998887665557788888865 456667777777765 4677888877765433333
Q ss_pred CCCCCCCCcccccEEECC-CCCCccccc-cccCCCCCceeeccccccccccCC-cccccceEeeecCcccccchhhccCc
Q 047161 612 LSGLCSLTELNLKKLNLR-RNNFVSLRG-TINHLPKFKHLKLDDCKRLRSLSE-LPSDIKKVRVHGCTSLATISDALRSC 688 (720)
Q Consensus 612 l~~l~~L~~L~L~~L~Ls-~n~l~~lp~-~i~~l~~L~~L~L~~c~~L~~lp~-lp~~L~~L~l~~c~~L~~lp~~~~~~ 688 (720)
+. .. +|..++++ +|.++.+|. .+..+++|+.|+|++| .++.+|. ...+|+.|.+.+|..++.+|. +.++
T Consensus 174 f~-~~-----~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N-~l~~lp~~~~~~L~~L~~l~~~~l~~lP~-l~~l 245 (350)
T 4ay9_X 174 FN-GT-----QLDELNLSDNNNLEELPNDVFHGASGPVILDISRT-RIHSLPSYGLENLKKLRARSTYNLKKLPT-LEKL 245 (350)
T ss_dssp ST-TE-----EEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTS-CCCCCCSSSCTTCCEEECTTCTTCCCCCC-TTTC
T ss_pred cc-cc-----chhHHhhccCCcccCCCHHHhccCcccchhhcCCC-CcCccChhhhccchHhhhccCCCcCcCCC-chhC
Confidence 32 22 45788887 478889985 5689999999999999 5788875 347899999999999999995 6778
Q ss_pred hhHhhhhhhcc
Q 047161 689 NSATSRIFCIN 699 (720)
Q Consensus 689 ~~L~~l~~~~n 699 (720)
++|+.+.+.++
T Consensus 246 ~~L~~l~l~~~ 256 (350)
T 4ay9_X 246 VALMEASLTYP 256 (350)
T ss_dssp CSCCEEECSCH
T ss_pred cChhhCcCCCC
Confidence 88877666543
No 89
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.64 E-value=3.7e-16 Score=162.31 Aligned_cols=178 Identities=12% Similarity=0.062 Sum_probs=74.6
Q ss_pred ccCCCCcEEeccCCCCCcccC----CCCCCCCCCCEEeccCCCCCcccCcCcCCCCCCCEEeccCccccc---CCccc-c
Q 047161 493 ELLTGLVFLNLNDCKILVRLP----STINGWKSLRTVNLSRCSKLENMPESLGQMESLEELDVSGTVIRQ---PVPSI-F 564 (720)
Q Consensus 493 ~~l~~L~~L~Ls~n~~~~~lp----~~i~~l~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~L~~n~l~~---~~~~~-~ 564 (720)
+.+++|++|+|++|.+.+..| ..+..+++|++|++++|.+.+..|..++.+++|++|++++|.+.+ .++.. .
T Consensus 114 ~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~ 193 (310)
T 4glp_A 114 ATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCP 193 (310)
T ss_dssp CCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCT
T ss_pred ccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhh
Confidence 344445555555444333222 122334445555555444433333444444555555555544332 11111 1
Q ss_pred CCcCCceEEEeecCCCCCCCCC---cccccccccccccCCCCcccccCCCCCCCCCCCcccccEEECCCCCCcccccccc
Q 047161 565 FPSRILKVYLFVDTRDHRTSSS---SWHLWFPFSLMQKGSSDSMALMLPSLSGLCSLTELNLKKLNLRRNNFVSLRGTIN 641 (720)
Q Consensus 565 ~~~~~L~~L~l~~~~~~~~~~~---~~~~l~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~L~Ls~n~l~~lp~~i~ 641 (720)
..+++|+.|++++|.+..+... .+..+..|+.++++.|......++.+..+..+. +|+.|+|++|.++.+|..+.
T Consensus 194 ~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~--~L~~L~Ls~N~l~~lp~~~~ 271 (310)
T 4glp_A 194 HKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSS--ALNSLNLSFAGLEQVPKGLP 271 (310)
T ss_dssp TSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCT--TCCCEECCSSCCCSCCSCCC
T ss_pred hcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcC--cCCEEECCCCCCCchhhhhc
Confidence 1224444444444444322111 122333444444444443333223333332111 12455566666666655443
Q ss_pred CCCCCceeeccccccccccCCcc--cccceEeeecC
Q 047161 642 HLPKFKHLKLDDCKRLRSLSELP--SDIKKVRVHGC 675 (720)
Q Consensus 642 ~l~~L~~L~L~~c~~L~~lp~lp--~~L~~L~l~~c 675 (720)
++|+.|+|++|+ +..+|.+. ++|+.|+++++
T Consensus 272 --~~L~~L~Ls~N~-l~~~~~~~~l~~L~~L~L~~N 304 (310)
T 4glp_A 272 --AKLRVLDLSSNR-LNRAPQPDELPEVDNLTLDGN 304 (310)
T ss_dssp --SCCSCEECCSCC-CCSCCCTTSCCCCSCEECSST
T ss_pred --CCCCEEECCCCc-CCCCchhhhCCCccEEECcCC
Confidence 566666666653 33333211 34555555554
No 90
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.61 E-value=8.5e-17 Score=169.16 Aligned_cols=69 Identities=14% Similarity=0.166 Sum_probs=33.5
Q ss_pred CCCCCCCCCcccccEEECCCCC-Ccc-ccccccCCCCCceeeccccccccccCCcccccceEeeecCcccccchhh
Q 047161 611 SLSGLCSLTELNLKKLNLRRNN-FVS-LRGTINHLPKFKHLKLDDCKRLRSLSELPSDIKKVRVHGCTSLATISDA 684 (720)
Q Consensus 611 ~l~~l~~L~~L~L~~L~Ls~n~-l~~-lp~~i~~l~~L~~L~L~~c~~L~~lp~lp~~L~~L~l~~c~~L~~lp~~ 684 (720)
.+..+++| +.|++++|. +.. ....+.++++|+.|++++|-.-..+..+...++.|+++++.--+..|..
T Consensus 242 ~l~~l~~L-----~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~i~~~~~~~l~~~l~~L~l~~n~l~~~~~~~ 312 (336)
T 2ast_B 242 EFFQLNYL-----QHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQINCSHFTTIARPT 312 (336)
T ss_dssp GGGGCTTC-----CEEECTTCTTCCGGGGGGGGGCTTCCEEECTTSSCTTCHHHHHHHSTTSEESCCCSCCTTCSS
T ss_pred HHhCCCCC-----CEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCccCHHHHHHHHhhCcceEEecccCccccCCc
Confidence 34445544 566666664 210 0114566777777777776111122223344666666544433334433
No 91
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.61 E-value=4.2e-16 Score=161.85 Aligned_cols=198 Identities=13% Similarity=0.044 Sum_probs=156.9
Q ss_pred cCCCCcEEeccCCCCCcccCCCC--CCCCCCCEEeccCCCCCcccC----cCcCCCCCCCEEeccCcccccCCccccCCc
Q 047161 494 LLTGLVFLNLNDCKILVRLPSTI--NGWKSLRTVNLSRCSKLENMP----ESLGQMESLEELDVSGTVIRQPVPSIFFPS 567 (720)
Q Consensus 494 ~l~~L~~L~Ls~n~~~~~lp~~i--~~l~~L~~L~L~~~~~l~~lp----~~~~~L~~L~~L~L~~n~l~~~~~~~~~~~ 567 (720)
.+++|++|++++|.+.+..|..+ +++++|++|++++|.+.+..| ..+..+++|++|++++|.+.+.++..+..+
T Consensus 89 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l 168 (310)
T 4glp_A 89 AYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAF 168 (310)
T ss_dssp HHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCC
T ss_pred ccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccC
Confidence 35779999999999888999888 899999999999998776555 345679999999999999999998887777
Q ss_pred CCceEEEeecCCCCC---CC-CCcccccccccccccCCCCcccccC--CC-CCCCCCCCcccccEEECCCCCCccc-ccc
Q 047161 568 RILKVYLFVDTRDHR---TS-SSSWHLWFPFSLMQKGSSDSMALML--PS-LSGLCSLTELNLKKLNLRRNNFVSL-RGT 639 (720)
Q Consensus 568 ~~L~~L~l~~~~~~~---~~-~~~~~~l~~l~~l~l~~~~~~~~~~--~~-l~~l~~L~~L~L~~L~Ls~n~l~~l-p~~ 639 (720)
++|+.|++++|.+.+ +. ...+..+..|+.+.++.+....... .. +..+++| ++|+|++|.++.+ |..
T Consensus 169 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L-----~~L~Ls~N~l~~~~p~~ 243 (310)
T 4glp_A 169 PALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQP-----HSLDLSHNSLRATVNPS 243 (310)
T ss_dssp TTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCC-----SSEECTTSCCCCCCCSC
T ss_pred CCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCC-----CEEECCCCCCCccchhh
Confidence 999999999998754 22 2334677889999998887642211 11 3455655 7889999999976 777
Q ss_pred ccCC---CCCceeeccccccccccCC-cccccceEeeecCcccccchhhccCchhHhhhhhhcc
Q 047161 640 INHL---PKFKHLKLDDCKRLRSLSE-LPSDIKKVRVHGCTSLATISDALRSCNSATSRIFCIN 699 (720)
Q Consensus 640 i~~l---~~L~~L~L~~c~~L~~lp~-lp~~L~~L~l~~c~~L~~lp~~~~~~~~L~~l~~~~n 699 (720)
+..+ ++|++|+|++| .++.+|. ++++|+.|++++|. +..+|. +..+++|+.|.+.+|
T Consensus 244 ~~~~~~~~~L~~L~Ls~N-~l~~lp~~~~~~L~~L~Ls~N~-l~~~~~-~~~l~~L~~L~L~~N 304 (310)
T 4glp_A 244 APRCMWSSALNSLNLSFA-GLEQVPKGLPAKLRVLDLSSNR-LNRAPQ-PDELPEVDNLTLDGN 304 (310)
T ss_dssp CSSCCCCTTCCCEECCSS-CCCSCCSCCCSCCSCEECCSCC-CCSCCC-TTSCCCCSCEECSST
T ss_pred HHhccCcCcCCEEECCCC-CCCchhhhhcCCCCEEECCCCc-CCCCch-hhhCCCccEEECcCC
Confidence 7666 79999999999 4667774 66899999999875 666665 577888888777765
No 92
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.60 E-value=1.7e-17 Score=182.64 Aligned_cols=303 Identities=15% Similarity=0.156 Sum_probs=169.1
Q ss_pred chhccCCcceEEEeccccCC----cccC-cc---ccceEEEecCCCCCC-----CCCCC-CCCcceEeeCCCCchhHHhh
Q 047161 377 AFLKMTNLRLLKIHNLQLPA----GLES-LS---DELRLLQWHGYPLKS-----LPSSM-EMDKTLECNMCYRRIEQFWK 442 (720)
Q Consensus 377 ~~~~l~~L~~L~l~~~~l~~----~~~~-l~---~~l~~L~~~~~~~~~-----lp~~~-~~~~l~~L~l~~~~i~~l~~ 442 (720)
.+..+++|+.|++++|.+.. .+.. +. ..++.|++++|.+.. +|..+ ...++++|++++|.+.....
T Consensus 51 ~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~ 130 (461)
T 1z7x_W 51 ALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGL 130 (461)
T ss_dssp HHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHH
T ss_pred HHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHH
Confidence 35566778888888776632 1111 11 157788888887662 34333 34577788888877654211
Q ss_pred hccCccccCCCCCCCCceeeecCCCCCCCCCCCCcccCccchhhhHHHHhccCCCCcEEeccCCCCCcccCCCCC-----
Q 047161 443 GIKNLIRTPDFTGAPNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILVRLPSTIN----- 517 (720)
Q Consensus 443 ~~~~l~~~~~~~~l~~L~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~----- 517 (720)
.. +.. .-+...++|++|++++|. +... ....++..+..+++|++|++++|.+....+..+.
T Consensus 131 ~~--l~~-~l~~~~~~L~~L~L~~n~-------l~~~----~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~ 196 (461)
T 1z7x_W 131 QL--LCE-GLLDPQCRLEKLQLEYCS-------LSAA----SCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKD 196 (461)
T ss_dssp HH--HHH-HHTSTTCCCCEEECTTSC-------CBGG----GHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHH
T ss_pred HH--HHH-HHhcCCCcceEEECCCCC-------CCHH----HHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhc
Confidence 10 000 002234578888888775 2221 1123344466677777777777774433222222
Q ss_pred CCCCCCEEeccCCCCCcc----cCcCcCCCCCCCEEeccCcccccCC-----ccccCCcCCceEEEeecCCCCCC----C
Q 047161 518 GWKSLRTVNLSRCSKLEN----MPESLGQMESLEELDVSGTVIRQPV-----PSIFFPSRILKVYLFVDTRDHRT----S 584 (720)
Q Consensus 518 ~l~~L~~L~L~~~~~l~~----lp~~~~~L~~L~~L~L~~n~l~~~~-----~~~~~~~~~L~~L~l~~~~~~~~----~ 584 (720)
.+++|++|++++|.+... +|..+..+++|++|++++|.+.... +.....+++|+.|++++|.+... .
T Consensus 197 ~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l 276 (461)
T 1z7x_W 197 SPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDL 276 (461)
T ss_dssp SCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHH
T ss_pred CCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHH
Confidence 245777777777755442 4556667777777777777665431 22222346777777777765543 1
Q ss_pred CCcccccccccccccCCCCcccccCCCCC-----CCCCCCcccccEEECCCCCCcc-----ccccccCCCCCceeecccc
Q 047161 585 SSSWHLWFPFSLMQKGSSDSMALMLPSLS-----GLCSLTELNLKKLNLRRNNFVS-----LRGTINHLPKFKHLKLDDC 654 (720)
Q Consensus 585 ~~~~~~l~~l~~l~l~~~~~~~~~~~~l~-----~l~~L~~L~L~~L~Ls~n~l~~-----lp~~i~~l~~L~~L~L~~c 654 (720)
+..+..+..++.++++.+...+.....+. ..++| +.|++++|.++. +|.++..+++|++|++++|
T Consensus 277 ~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L-----~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n 351 (461)
T 1z7x_W 277 CRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQL-----ESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNN 351 (461)
T ss_dssp HHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCC-----CEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSS
T ss_pred HHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccc-----eeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCC
Confidence 23344466677777776654332211111 11233 566677776653 3555666677777777777
Q ss_pred ccccccC---------CcccccceEeeecCcccc----cchhhccCchhHhhhhhhcc
Q 047161 655 KRLRSLS---------ELPSDIKKVRVHGCTSLA----TISDALRSCNSATSRIFCIN 699 (720)
Q Consensus 655 ~~L~~lp---------~lp~~L~~L~l~~c~~L~----~lp~~~~~~~~L~~l~~~~n 699 (720)
. +...+ ...++|++|++++|.--. .+|..+..+++|+.+++.+|
T Consensus 352 ~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N 408 (461)
T 1z7x_W 352 R-LEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNN 408 (461)
T ss_dssp B-CHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSS
T ss_pred c-cccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCC
Confidence 3 22211 112367777777764222 56666666677777666554
No 93
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.60 E-value=5.5e-15 Score=151.71 Aligned_cols=172 Identities=16% Similarity=0.235 Sum_probs=129.4
Q ss_pred CCCCCCCCceeeecCCCCCCCCCCCCcccCccchhhhHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCC
Q 047161 451 PDFTGAPNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRC 530 (720)
Q Consensus 451 ~~~~~l~~L~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~ 530 (720)
..+..+++|+.|++++|. +..++. +..+++|++|++++|.+. .+|. ++++++|++|++++|
T Consensus 40 ~~~~~l~~L~~L~l~~~~-------i~~~~~----------~~~l~~L~~L~L~~n~l~-~~~~-l~~l~~L~~L~l~~n 100 (291)
T 1h6t_A 40 VTQNELNSIDQIIANNSD-------IKSVQG----------IQYLPNVTKLFLNGNKLT-DIKP-LANLKNLGWLFLDEN 100 (291)
T ss_dssp ECHHHHHTCCEEECTTSC-------CCCCTT----------GGGCTTCCEEECCSSCCC-CCGG-GTTCTTCCEEECCSS
T ss_pred cchhhcCcccEEEccCCC-------cccChh----------HhcCCCCCEEEccCCccC-CCcc-cccCCCCCEEECCCC
Confidence 335567788999998886 455543 777889999999998854 4554 888999999999988
Q ss_pred CCCcccCcCcCCCCCCCEEeccCcccccCCccccCCcCCceEEEeecCCCCCCCCCcccccccccccccCCCCcccccCC
Q 047161 531 SKLENMPESLGQMESLEELDVSGTVIRQPVPSIFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLP 610 (720)
Q Consensus 531 ~~l~~lp~~~~~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~ 610 (720)
.+ ..+|. ++.+++|++|++++|.+.+. +.+.. +++|+.|++++|.+..+ ..+..+..|+.++++.+.......
T Consensus 101 ~l-~~~~~-l~~l~~L~~L~L~~n~i~~~-~~l~~-l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~- 173 (291)
T 1h6t_A 101 KV-KDLSS-LKDLKKLKSLSLEHNGISDI-NGLVH-LPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP- 173 (291)
T ss_dssp CC-CCGGG-GTTCTTCCEEECTTSCCCCC-GGGGG-CTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG-
T ss_pred cC-CCChh-hccCCCCCEEECCCCcCCCC-hhhcC-CCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh-
Confidence 64 44544 88889999999999988876 33433 48899999988887776 466777778888777776554332
Q ss_pred CCCCCCCCCcccccEEECCCCCCccccccccCCCCCceeeccccc
Q 047161 611 SLSGLCSLTELNLKKLNLRRNNFVSLRGTINHLPKFKHLKLDDCK 655 (720)
Q Consensus 611 ~l~~l~~L~~L~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~ 655 (720)
+..+++| +.|++++|.++.+|. +..+++|+.|++++|+
T Consensus 174 -l~~l~~L-----~~L~L~~N~i~~l~~-l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 174 -LAGLTKL-----QNLYLSKNHISDLRA-LAGLKNLDVLELFSQE 211 (291)
T ss_dssp -GTTCTTC-----CEEECCSSCCCBCGG-GTTCTTCSEEEEEEEE
T ss_pred -hcCCCcc-----CEEECCCCcCCCChh-hccCCCCCEEECcCCc
Confidence 6666665 778888888888874 7888889999998885
No 94
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.56 E-value=2.9e-14 Score=138.67 Aligned_cols=180 Identities=15% Similarity=0.117 Sum_probs=131.8
Q ss_pred eeeecCCCCCCCCCCCCcccCccchhhhHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCCCcccCcC
Q 047161 460 EELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMPES 539 (720)
Q Consensus 460 ~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~ 539 (720)
+.++.+++. +..+|... .++|++|++++|.+.+..+..++++++|++|++++|.+.+..+..
T Consensus 10 ~~v~c~~~~-------l~~~p~~~-----------~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 71 (208)
T 2o6s_A 10 TTVECYSQG-------RTSVPTGI-----------PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGV 71 (208)
T ss_dssp TEEECCSSC-------CSSCCSCC-----------CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTT
T ss_pred CEEEecCCC-------ccCCCCCC-----------CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhh
Confidence 556666654 56777652 468999999999866554556789999999999998765444455
Q ss_pred cCCCCCCCEEeccCcccccCCccccCCcCCceEEEeecCCCCCCCCCcccccccccccccCCCCcccccCCCCCCCCCCC
Q 047161 540 LGQMESLEELDVSGTVIRQPVPSIFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSLSGLCSLT 619 (720)
Q Consensus 540 ~~~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~l~~l~~L~ 619 (720)
+..+++|++|++++|.+.+.++..+..+++|+.|++++|.+..+.+.. +..+++|
T Consensus 72 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~------------------------~~~l~~L- 126 (208)
T 2o6s_A 72 FNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGV------------------------FDKLTQL- 126 (208)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT------------------------TTTCTTC-
T ss_pred cCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhH------------------------hccCCcC-
Confidence 789999999999999999988887766699999999777655433322 4455555
Q ss_pred cccccEEECCCCCCcccccc-ccCCCCCceeeccccccccccCCcccccceEeeecCcccccchhhccCchh
Q 047161 620 ELNLKKLNLRRNNFVSLRGT-INHLPKFKHLKLDDCKRLRSLSELPSDIKKVRVHGCTSLATISDALRSCNS 690 (720)
Q Consensus 620 ~L~L~~L~Ls~n~l~~lp~~-i~~l~~L~~L~L~~c~~L~~lp~lp~~L~~L~l~~c~~L~~lp~~~~~~~~ 690 (720)
+.|++++|.++.+|.. +..+++|+.|++++|+.. .-.++|+.|++..+..-+.+|+++..++.
T Consensus 127 ----~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~----~~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 127 ----KDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD----CTCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp ----CEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC----CCTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred ----CEEECCCCccceeCHHHhccCCCccEEEecCCCee----cCCCCHHHHHHHHHhCCceeeccCccccC
Confidence 6778888888877754 677888888888888632 22345777777777766777777666554
No 95
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.56 E-value=3.6e-14 Score=158.06 Aligned_cols=160 Identities=18% Similarity=0.206 Sum_probs=83.2
Q ss_pred CCceeeecCCCCCCCCCCCCcccCccchhhhHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCCCccc
Q 047161 457 PNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENM 536 (720)
Q Consensus 457 ~~L~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~l~~l 536 (720)
++|++|+|++|. +..+| . .+++|++|++++|.+. .+|. +++ +|++|++++|.+.+ +
T Consensus 80 ~~L~~L~Ls~N~-------l~~ip-~-----------~l~~L~~L~Ls~N~l~-~ip~-l~~--~L~~L~Ls~N~l~~-l 135 (571)
T 3cvr_A 80 PQITVLEITQNA-------LISLP-E-----------LPASLEYLDACDNRLS-TLPE-LPA--SLKHLDVDNNQLTM-L 135 (571)
T ss_dssp TTCSEEECCSSC-------CSCCC-C-----------CCTTCCEEECCSSCCS-CCCC-CCT--TCCEEECCSSCCSC-C
T ss_pred CCCCEEECcCCC-------Ccccc-c-----------ccCCCCEEEccCCCCC-Ccch-hhc--CCCEEECCCCcCCC-C
Confidence 566666666655 34444 2 1456666666666533 3555 443 66666666654333 5
Q ss_pred CcCcCCCCCCCEEeccCcccccCCccccCCcCCceEEEeecCCCCCCCCCcccccccccccccCCCCcccccCCCCCCCC
Q 047161 537 PESLGQMESLEELDVSGTVIRQPVPSIFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSLSGLC 616 (720)
Q Consensus 537 p~~~~~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~l~~l~ 616 (720)
|. .+++|++|++++|.++++|. .+++|+.|++++|.+..++. +. .+|+.++++.|.+.. +|.+..
T Consensus 136 p~---~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~L~~lp~--l~--~~L~~L~Ls~N~L~~--lp~~~~-- 200 (571)
T 3cvr_A 136 PE---LPALLEYINADNNQLTMLPE----LPTSLEVLSVRNNQLTFLPE--LP--ESLEALDVSTNLLES--LPAVPV-- 200 (571)
T ss_dssp CC---CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCCCC--CC--TTCCEEECCSSCCSS--CCCCC---
T ss_pred CC---cCccccEEeCCCCccCcCCC----cCCCcCEEECCCCCCCCcch--hh--CCCCEEECcCCCCCc--hhhHHH--
Confidence 54 45666666666666666444 22566666666666555444 32 455555555554431 111211
Q ss_pred CCC--cccccEEECCCCCCccccccccCCCCCceeeccccc
Q 047161 617 SLT--ELNLKKLNLRRNNFVSLRGTINHLPKFKHLKLDDCK 655 (720)
Q Consensus 617 ~L~--~L~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~ 655 (720)
+|. .-.|+.|+|++|.++.+|..+..+++|+.|+|++|+
T Consensus 201 ~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~ 241 (571)
T 3cvr_A 201 RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNP 241 (571)
T ss_dssp -------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSS
T ss_pred hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCc
Confidence 110 001155566666666666555556666666666654
No 96
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.56 E-value=6.8e-14 Score=136.03 Aligned_cols=160 Identities=19% Similarity=0.147 Sum_probs=121.6
Q ss_pred CCCCCCceeeecCCCCCCCCCCCCcccCccchhhhHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCC
Q 047161 453 FTGAPNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSK 532 (720)
Q Consensus 453 ~~~l~~L~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~ 532 (720)
..-.++|++|++++|. +..++... ++.+++|++|++++|.+.+..+..+.++++|++|++++|.+
T Consensus 24 ~~~~~~l~~L~l~~n~-------l~~~~~~~--------~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 88 (208)
T 2o6s_A 24 TGIPAQTTYLDLETNS-------LKSLPNGV--------FDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQL 88 (208)
T ss_dssp SCCCTTCSEEECCSSC-------CCCCCTTT--------TTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CCCCCCCcEEEcCCCc-------cCcCChhh--------hcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcC
Confidence 3457899999999997 56676653 67899999999999986544445578999999999999976
Q ss_pred CcccCcCcCCCCCCCEEeccCcccccCCccccCCcCCceEEEeecCCCCCCCCCcccccccccccccCCCCcccccCCCC
Q 047161 533 LENMPESLGQMESLEELDVSGTVIRQPVPSIFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSL 612 (720)
Q Consensus 533 l~~lp~~~~~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~l 612 (720)
.+..+..++++++|++|++++|.+.+.++..+..+++|+.|++++|.+..+.+.. +
T Consensus 89 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~------------------------~ 144 (208)
T 2o6s_A 89 QSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGV------------------------F 144 (208)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTT------------------------T
T ss_pred CccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHH------------------------h
Confidence 6544456899999999999999999999887776799999999877665543322 3
Q ss_pred CCCCCCCcccccEEECCCCCCccccccccCCCCCceeeccccccccccCC
Q 047161 613 SGLCSLTELNLKKLNLRRNNFVSLRGTINHLPKFKHLKLDDCKRLRSLSE 662 (720)
Q Consensus 613 ~~l~~L~~L~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~ 662 (720)
..+++| +.|++++|.+. ..+++|+.|+++.|..-..+|.
T Consensus 145 ~~l~~L-----~~L~l~~N~~~------~~~~~l~~L~~~~n~~~g~ip~ 183 (208)
T 2o6s_A 145 DRLTSL-----QYIWLHDNPWD------CTCPGIRYLSEWINKHSGVVRN 183 (208)
T ss_dssp TTCTTC-----CEEECCSCCBC------CCTTTTHHHHHHHHHCTTTBBC
T ss_pred ccCCCc-----cEEEecCCCee------cCCCCHHHHHHHHHhCCceeec
Confidence 445554 66777777543 3556778888877764445543
No 97
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.55 E-value=6e-14 Score=156.28 Aligned_cols=186 Identities=17% Similarity=0.166 Sum_probs=135.7
Q ss_pred cceEEEecCCCCCCCCCCCCCCcceEeeCCCCchhHHhhhccCccccCCCCCCCCceeeecCCCCCCCCCCCCcccCccc
Q 047161 404 ELRLLQWHGYPLKSLPSSMEMDKTLECNMCYRRIEQFWKGIKNLIRTPDFTGAPNLEELILDGCKRLQNCTSLTTLPREI 483 (720)
Q Consensus 404 ~l~~L~~~~~~~~~lp~~~~~~~l~~L~l~~~~i~~l~~~~~~l~~~~~~~~l~~L~~L~L~~~~~l~~~~~L~~lp~~~ 483 (720)
.++.|++++|.+..+|..+. .++..|++++|++..+ | ..+++|++|+|++|. +..+|. +
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l~-~~L~~L~Ls~N~l~~i----------p--~~l~~L~~L~Ls~N~-------l~~ip~-l 118 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNLP-PQITVLEITQNALISL----------P--ELPASLEYLDACDNR-------LSTLPE-L 118 (571)
T ss_dssp TCSEEECCSSCCSCCCSCCC-TTCSEEECCSSCCSCC----------C--CCCTTCCEEECCSSC-------CSCCCC-C
T ss_pred CccEEEeCCCCCCccCHhHc-CCCCEEECcCCCCccc----------c--cccCCCCEEEccCCC-------CCCcch-h
Confidence 35566666666666776553 6788889888877543 3 457899999999987 456665 2
Q ss_pred hhhhHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCCCcccCcCcCCCCCCCEEeccCcccccCCccc
Q 047161 484 ATESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMPESLGQMESLEELDVSGTVIRQPVPSI 563 (720)
Q Consensus 484 ~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~L~~n~l~~~~~~~ 563 (720)
.. +|++|+|++|.+. .+|. .+++|++|++++|.+. .+|. .+++|++|++++|.+.++|.
T Consensus 119 ---------~~--~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~L~~lp~-- 177 (571)
T 3cvr_A 119 ---------PA--SLKHLDVDNNQLT-MLPE---LPALLEYINADNNQLT-MLPE---LPTSLEVLSVRNNQLTFLPE-- 177 (571)
T ss_dssp ---------CT--TCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSCCCC--
T ss_pred ---------hc--CCCEEECCCCcCC-CCCC---cCccccEEeCCCCccC-cCCC---cCCCcCEEECCCCCCCCcch--
Confidence 11 8999999999854 4787 6899999999998654 4776 57889999999999999776
Q ss_pred cCCcCCceEEEeecCCCCCCCCCcccccccc-------cccccCCCCcccccCCCCCCCCCCCcccccEEECCCCCCc-c
Q 047161 564 FFPSRILKVYLFVDTRDHRTSSSSWHLWFPF-------SLMQKGSSDSMALMLPSLSGLCSLTELNLKKLNLRRNNFV-S 635 (720)
Q Consensus 564 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l-------~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~L~Ls~n~l~-~ 635 (720)
+. ++|+.|++++|.+..++. +.. .+ ..+++..|.+.. .+..+..+++| +.|+|++|.++ .
T Consensus 178 l~--~~L~~L~Ls~N~L~~lp~--~~~--~L~~~~~~L~~L~Ls~N~l~~-lp~~l~~l~~L-----~~L~L~~N~l~~~ 245 (571)
T 3cvr_A 178 LP--ESLEALDVSTNLLESLPA--VPV--RNHHSEETEIFFRCRENRITH-IPENILSLDPT-----CTIILEDNPLSSR 245 (571)
T ss_dssp CC--TTCCEEECCSSCCSSCCC--CC----------CCEEEECCSSCCCC-CCGGGGGSCTT-----EEEECCSSSCCHH
T ss_pred hh--CCCCEEECcCCCCCchhh--HHH--hhhcccccceEEecCCCccee-cCHHHhcCCCC-----CEEEeeCCcCCCc
Confidence 32 889999999999887766 433 55 788888876653 22235556665 78899999987 4
Q ss_pred ccccccCC
Q 047161 636 LRGTINHL 643 (720)
Q Consensus 636 lp~~i~~l 643 (720)
+|..+..+
T Consensus 246 ~p~~l~~l 253 (571)
T 3cvr_A 246 IRESLSQQ 253 (571)
T ss_dssp HHHHHHHH
T ss_pred CHHHHHHh
Confidence 56666443
No 98
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.55 E-value=5.9e-17 Score=178.31 Aligned_cols=299 Identities=14% Similarity=0.093 Sum_probs=147.0
Q ss_pred hhccCCcceEEEeccccCC--------cccCccccceEEEecCCCCCCC-----CCCCC--CCcceEeeCCCCchhHHhh
Q 047161 378 FLKMTNLRLLKIHNLQLPA--------GLESLSDELRLLQWHGYPLKSL-----PSSME--MDKTLECNMCYRRIEQFWK 442 (720)
Q Consensus 378 ~~~l~~L~~L~l~~~~l~~--------~~~~l~~~l~~L~~~~~~~~~l-----p~~~~--~~~l~~L~l~~~~i~~l~~ 442 (720)
|..+++|+.|++++|.+.. .+..+ ..++.|++++|.+... ...+. ..++++|++++|.+.....
T Consensus 24 ~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~-~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~ 102 (461)
T 1z7x_W 24 LPLLQQCQVVRLDDCGLTEARCKDISSALRVN-PALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGC 102 (461)
T ss_dssp HHHHTTCSEEEEESSCCCHHHHHHHHHHHHTC-TTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGH
T ss_pred HhhcCCccEEEccCCCCCHHHHHHHHHHHHhC-CCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHH
Confidence 5566777777777776542 11121 3467777777665431 11111 1146666666666542110
Q ss_pred hccCccccCCCCCCCCceeeecCCCCCCCCCCCCcccCccchhhhHHHH-hccCCCCcEEeccCCCCCc----ccCCCCC
Q 047161 443 GIKNLIRTPDFTGAPNLEELILDGCKRLQNCTSLTTLPREIATESLQKL-IELLTGLVFLNLNDCKILV----RLPSTIN 517 (720)
Q Consensus 443 ~~~~l~~~~~~~~l~~L~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~-i~~l~~L~~L~Ls~n~~~~----~lp~~i~ 517 (720)
.. -...+..+++|++|++++|. +.... ...+... ....++|++|++++|.+.. .++..+.
T Consensus 103 ~~----l~~~l~~~~~L~~L~Ls~n~-------i~~~~----~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~ 167 (461)
T 1z7x_W 103 GV----LSSTLRTLPTLQELHLSDNL-------LGDAG----LQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLR 167 (461)
T ss_dssp HH----HHHHTTSCTTCCEEECCSSB-------CHHHH----HHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHH
T ss_pred HH----HHHHHccCCceeEEECCCCc-------CchHH----HHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHh
Confidence 00 01125566677777777665 12110 0011111 2224567777777776443 2344555
Q ss_pred CCCCCCEEeccCCCCCcccCcCcC-----CCCCCCEEeccCcccccCC----ccccCCcCCceEEEeecCCCCCCC----
Q 047161 518 GWKSLRTVNLSRCSKLENMPESLG-----QMESLEELDVSGTVIRQPV----PSIFFPSRILKVYLFVDTRDHRTS---- 584 (720)
Q Consensus 518 ~l~~L~~L~L~~~~~l~~lp~~~~-----~L~~L~~L~L~~n~l~~~~----~~~~~~~~~L~~L~l~~~~~~~~~---- 584 (720)
.+++|++|++++|.+....+..+. .+++|++|++++|.+.... +..+..+++|+.|++++|.+....
T Consensus 168 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l 247 (461)
T 1z7x_W 168 AKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAEL 247 (461)
T ss_dssp HCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHH
T ss_pred hCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHH
Confidence 667777777777654332222222 2456777777777666531 222223367777777666544321
Q ss_pred -CCcccccccccccccCCCCccccc----CCCCCCCCCCCcccccEEECCCCCCccc-----cccc-cCCCCCceeeccc
Q 047161 585 -SSSWHLWFPFSLMQKGSSDSMALM----LPSLSGLCSLTELNLKKLNLRRNNFVSL-----RGTI-NHLPKFKHLKLDD 653 (720)
Q Consensus 585 -~~~~~~l~~l~~l~l~~~~~~~~~----~~~l~~l~~L~~L~L~~L~Ls~n~l~~l-----p~~i-~~l~~L~~L~L~~ 653 (720)
+..+..+..++.+++..+...... ...+..+++| +.|++++|.+... +..+ ...++|++|++++
T Consensus 248 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L-----~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~ 322 (461)
T 1z7x_W 248 CPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESL-----KELSLAGNELGDEGARLLCETLLEPGCQLESLWVKS 322 (461)
T ss_dssp HHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTC-----CEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred HHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCc-----ceEECCCCCCchHHHHHHHHHhccCCccceeeEcCC
Confidence 112223455666666655443321 1113334444 5666677766522 2122 1235777777777
Q ss_pred ccccccc-----CCc---ccccceEeeecCcccccc-hh----hccC-chhHhhhhhhcc
Q 047161 654 CKRLRSL-----SEL---PSDIKKVRVHGCTSLATI-SD----ALRS-CNSATSRIFCIN 699 (720)
Q Consensus 654 c~~L~~l-----p~l---p~~L~~L~l~~c~~L~~l-p~----~~~~-~~~L~~l~~~~n 699 (720)
|. +... +.. .++|+.|++++|. +... +. .+.. +++|+.|++.+|
T Consensus 323 n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n 380 (461)
T 1z7x_W 323 CS-FTAACCSHFSSVLAQNRFLLELQISNNR-LEDAGVRELCQGLGQPGSVLRVLWLADC 380 (461)
T ss_dssp SC-CBGGGHHHHHHHHHHCSSCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred CC-CchHHHHHHHHHHhhCCCccEEEccCCc-cccccHHHHHHHHcCCCCceEEEECCCC
Confidence 74 2221 111 1457777777763 3322 22 2221 456677666554
No 99
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.55 E-value=3.8e-14 Score=159.61 Aligned_cols=170 Identities=16% Similarity=0.232 Sum_probs=116.6
Q ss_pred CCCCCCceeeecCCCCCCCCCCCCcccCccchhhhHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCC
Q 047161 453 FTGAPNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSK 532 (720)
Q Consensus 453 ~~~l~~L~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~ 532 (720)
+..+++|+.|++++|. +..++. ++.+++|+.|+|++|.+.+ +|. ++.+++|+.|+|++|.+
T Consensus 39 ~~~L~~L~~L~l~~n~-------i~~l~~----------l~~l~~L~~L~Ls~N~l~~-~~~-l~~l~~L~~L~Ls~N~l 99 (605)
T 1m9s_A 39 QNELNSIDQIIANNSD-------IKSVQG----------IQYLPNVTKLFLNGNKLTD-IKP-LTNLKNLGWLFLDENKI 99 (605)
T ss_dssp HHHHTTCCCCBCTTCC-------CCCCTT----------GGGCTTCCEEECTTSCCCC-CGG-GGGCTTCCEEECCSSCC
T ss_pred hhcCCCCCEEECcCCC-------CCCChH----------HccCCCCCEEEeeCCCCCC-Chh-hccCCCCCEEECcCCCC
Confidence 4556677777777766 445542 6667777777777777433 443 67777777777777754
Q ss_pred CcccCcCcCCCCCCCEEeccCcccccCCccccCCcCCceEEEeecCCCCCCCCCcccccccccccccCCCCcccccCCCC
Q 047161 533 LENMPESLGQMESLEELDVSGTVIRQPVPSIFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSL 612 (720)
Q Consensus 533 l~~lp~~~~~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~l 612 (720)
. .+| .+..|++|++|+|++|.+.+++ .+.. +++|+.|++++|.+..+ ..+..+..|+.|+++.+.+..... +
T Consensus 100 ~-~l~-~l~~l~~L~~L~Ls~N~l~~l~-~l~~-l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l 171 (605)
T 1m9s_A 100 K-DLS-SLKDLKKLKSLSLEHNGISDIN-GLVH-LPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--L 171 (605)
T ss_dssp C-CCT-TSTTCTTCCEEECTTSCCCCCG-GGGG-CTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--G
T ss_pred C-CCh-hhccCCCCCEEEecCCCCCCCc-cccC-CCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--h
Confidence 3 344 5777777777777777777653 3333 37777777777777665 456667777777777665544322 6
Q ss_pred CCCCCCCcccccEEECCCCCCccccccccCCCCCceeeccccc
Q 047161 613 SGLCSLTELNLKKLNLRRNNFVSLRGTINHLPKFKHLKLDDCK 655 (720)
Q Consensus 613 ~~l~~L~~L~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~ 655 (720)
..+++| +.|+|++|.+..+| .+..+++|+.|+|++|+
T Consensus 172 ~~l~~L-----~~L~Ls~N~i~~l~-~l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 172 AGLTKL-----QNLYLSKNHISDLR-ALAGLKNLDVLELFSQE 208 (605)
T ss_dssp TTCTTC-----CEEECCSSCCCBCG-GGTTCTTCSEEECCSEE
T ss_pred ccCCCC-----CEEECcCCCCCCCh-HHccCCCCCEEEccCCc
Confidence 666665 77888888888876 57888889999998885
No 100
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.54 E-value=2.1e-16 Score=169.61 Aligned_cols=239 Identities=16% Similarity=0.148 Sum_probs=133.2
Q ss_pred CCcceEeeCCCCchhHHhhhccCccccCCCCCCCCceeeecCCCCCCCCCCCCcccCccc--hhhhHHHHhccCCCCcEE
Q 047161 424 MDKTLECNMCYRRIEQFWKGIKNLIRTPDFTGAPNLEELILDGCKRLQNCTSLTTLPREI--ATESLQKLIELLTGLVFL 501 (720)
Q Consensus 424 ~~~l~~L~l~~~~i~~l~~~~~~l~~~~~~~~l~~L~~L~L~~~~~l~~~~~L~~lp~~~--~~~~l~~~i~~l~~L~~L 501 (720)
..+++.|+++++.+....... -...+..+++|++|+|++|. +..+...+ ....+...+..+++|++|
T Consensus 31 ~~~L~~L~L~~n~i~~~~~~~----l~~~l~~~~~L~~L~Ls~~~-------~~~l~~~~~~~~~~l~~~l~~~~~L~~L 99 (386)
T 2ca6_A 31 DDSVKEIVLSGNTIGTEAARW----LSENIASKKDLEIAEFSDIF-------TGRVKDEIPEALRLLLQALLKCPKLHTV 99 (386)
T ss_dssp CSCCCEEECTTSEECHHHHHH----HHHTTTTCTTCCEEECCSCC-------TTSCGGGSHHHHHHHHHHHTTCTTCCEE
T ss_pred CCCccEEECCCCCCCHHHHHH----HHHHHHhCCCccEEeCcccc-------cCccccchhHHHHHHHHHHhhCCcccEE
Confidence 456778888887765432110 00125677888888888875 12222111 112333446778888888
Q ss_pred eccCCCCCc----ccCCCCCCCCCCCEEeccCCCCCcc----cCcCcCCC---------CCCCEEeccCcccc-cCCc--
Q 047161 502 NLNDCKILV----RLPSTINGWKSLRTVNLSRCSKLEN----MPESLGQM---------ESLEELDVSGTVIR-QPVP-- 561 (720)
Q Consensus 502 ~Ls~n~~~~----~lp~~i~~l~~L~~L~L~~~~~l~~----lp~~~~~L---------~~L~~L~L~~n~l~-~~~~-- 561 (720)
+|++|.+.. .+|..+.++++|++|+|++|.+... ++..+..+ ++|++|++++|.+. +..+
T Consensus 100 ~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l 179 (386)
T 2ca6_A 100 RLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEW 179 (386)
T ss_dssp ECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHH
T ss_pred ECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHH
Confidence 888888655 4677777888888888888866432 22233333 78888888888876 2222
Q ss_pred -cccCCcCCceEEEeecCCCCCCCCCcccccccccccccCCCCcccccCC-CCCCCCCCCcccccEEECCCCCC-----c
Q 047161 562 -SIFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLP-SLSGLCSLTELNLKKLNLRRNNF-----V 634 (720)
Q Consensus 562 -~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~-~l~~l~~L~~L~L~~L~Ls~n~l-----~ 634 (720)
..+..+++|+.|++++|.+..... ....+ .+..+++| +.|+|++|.+ .
T Consensus 180 ~~~l~~~~~L~~L~L~~n~l~~~g~--------------------~~l~~~~l~~~~~L-----~~L~Ls~n~l~~~g~~ 234 (386)
T 2ca6_A 180 AKTFQSHRLLHTVKMVQNGIRPEGI--------------------EHLLLEGLAYCQEL-----KVLDLQDNTFTHLGSS 234 (386)
T ss_dssp HHHHHHCTTCCEEECCSSCCCHHHH--------------------HHHHHTTGGGCTTC-----CEEECCSSCCHHHHHH
T ss_pred HHHHHhCCCcCEEECcCCCCCHhHH--------------------HHHHHHHhhcCCCc-----cEEECcCCCCCcHHHH
Confidence 122234788888887765441000 00011 23334443 4556666665 3
Q ss_pred cccccccCCCCCceeecccccccccc-----CC-c----ccccceEeeecCcccc----cchhhc-cCchhHhhhhhhcc
Q 047161 635 SLRGTINHLPKFKHLKLDDCKRLRSL-----SE-L----PSDIKKVRVHGCTSLA----TISDAL-RSCNSATSRIFCIN 699 (720)
Q Consensus 635 ~lp~~i~~l~~L~~L~L~~c~~L~~l-----p~-l----p~~L~~L~l~~c~~L~----~lp~~~-~~~~~L~~l~~~~n 699 (720)
.+|..+..+++|++|+|++|. +... +. + .++|+.|++++|.--. .+|..+ .++++|+.|++.+|
T Consensus 235 ~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N 313 (386)
T 2ca6_A 235 ALAIALKSWPNLRELGLNDCL-LSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGN 313 (386)
T ss_dssp HHHHHGGGCTTCCEEECTTCC-CCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTS
T ss_pred HHHHHHccCCCcCEEECCCCC-CchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCC
Confidence 455556666666666666664 2221 11 1 2446666666654322 255554 34566666555544
No 101
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.54 E-value=2.3e-14 Score=138.04 Aligned_cols=151 Identities=19% Similarity=0.200 Sum_probs=116.6
Q ss_pred CCCCCceeeecCCCCCCCCCCCCcccCccchhhhHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCCC
Q 047161 454 TGAPNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKL 533 (720)
Q Consensus 454 ~~l~~L~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~l 533 (720)
..+++|+.|++++|. +..+| . +..+++|++|++++|. +..+ ..++.+++|++|++++|.+.
T Consensus 41 ~~l~~L~~L~l~~n~-------i~~l~-~---------l~~l~~L~~L~l~~n~-~~~~-~~l~~l~~L~~L~l~~n~l~ 101 (197)
T 4ezg_A 41 AQMNSLTYITLANIN-------VTDLT-G---------IEYAHNIKDLTINNIH-ATNY-NPISGLSNLERLRIMGKDVT 101 (197)
T ss_dssp HHHHTCCEEEEESSC-------CSCCT-T---------GGGCTTCSEEEEESCC-CSCC-GGGTTCTTCCEEEEECTTCB
T ss_pred hhcCCccEEeccCCC-------ccChH-H---------HhcCCCCCEEEccCCC-CCcc-hhhhcCCCCCEEEeECCccC
Confidence 467789999999887 56666 3 7888999999999996 4444 47888999999999999877
Q ss_pred cccCcCcCCCCCCCEEeccCcccccCCccccCCcCCceEEEeecCC-CCCCCCCcccccccccccccCCCCcccccCCCC
Q 047161 534 ENMPESLGQMESLEELDVSGTVIRQPVPSIFFPSRILKVYLFVDTR-DHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSL 612 (720)
Q Consensus 534 ~~lp~~~~~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~l 612 (720)
+..|..++.+++|++|++++|.+.+..+..+..+++|+.|++++|. ... ++.+
T Consensus 102 ~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~--------------------------~~~l 155 (197)
T 4ezg_A 102 SDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITD--------------------------IMPL 155 (197)
T ss_dssp GGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCC--------------------------CGGG
T ss_pred cccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccc--------------------------cHhh
Confidence 7788889999999999999999887555555555888888886664 222 1234
Q ss_pred CCCCCCCcccccEEECCCCCCccccccccCCCCCceeeccccc
Q 047161 613 SGLCSLTELNLKKLNLRRNNFVSLRGTINHLPKFKHLKLDDCK 655 (720)
Q Consensus 613 ~~l~~L~~L~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~ 655 (720)
..+++| +.|++++|.++.++ .+..+++|+.|++++|+
T Consensus 156 ~~l~~L-----~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 156 KTLPEL-----KSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp GGCSSC-----CEEECTTBCCCCCT-TGGGCSSCCEEEECBC-
T ss_pred cCCCCC-----CEEECCCCCCcChH-HhccCCCCCEEEeeCcc
Confidence 455555 77888888888877 77888889999988885
No 102
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.53 E-value=4.2e-14 Score=145.09 Aligned_cols=168 Identities=14% Similarity=0.158 Sum_probs=138.8
Q ss_pred hccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCCCcccCcCcCCCCCCCEEeccCcccccCCccccCCcCCce
Q 047161 492 IELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMPESLGQMESLEELDVSGTVIRQPVPSIFFPSRILK 571 (720)
Q Consensus 492 i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~ 571 (720)
+..+++|++|++++|. +..+| .++.+++|++|++++|.+.+ +|. +.++++|++|++++|.+.+.+. +..+++|+
T Consensus 42 ~~~l~~L~~L~l~~~~-i~~~~-~~~~l~~L~~L~L~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~ 115 (291)
T 1h6t_A 42 QNELNSIDQIIANNSD-IKSVQ-GIQYLPNVTKLFLNGNKLTD-IKP-LANLKNLGWLFLDENKVKDLSS--LKDLKKLK 115 (291)
T ss_dssp HHHHHTCCEEECTTSC-CCCCT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCCGGG--GTTCTTCC
T ss_pred hhhcCcccEEEccCCC-cccCh-hHhcCCCCCEEEccCCccCC-Ccc-cccCCCCCEEECCCCcCCCChh--hccCCCCC
Confidence 5668899999999998 55665 48899999999999997554 555 9999999999999999988654 44459999
Q ss_pred EEEeecCCCCCCCCCcccccccccccccCCCCcccccCCCCCCCCCCCcccccEEECCCCCCccccccccCCCCCceeec
Q 047161 572 VYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSLSGLCSLTELNLKKLNLRRNNFVSLRGTINHLPKFKHLKL 651 (720)
Q Consensus 572 ~L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L 651 (720)
.|++++|.+..+ ..+..+..|+.++++.+..... +.+..+++| +.|++++|.++.++. +..+++|+.|++
T Consensus 116 ~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L-----~~L~L~~N~l~~~~~-l~~l~~L~~L~L 185 (291)
T 1h6t_A 116 SLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKL-----DTLSLEDNQISDIVP-LAGLTKLQNLYL 185 (291)
T ss_dssp EEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTC-----SEEECCSSCCCCCGG-GTTCTTCCEEEC
T ss_pred EEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCC-----CEEEccCCccccchh-hcCCCccCEEEC
Confidence 999999998886 4677888999999988876554 456677766 788999999998876 899999999999
Q ss_pred cccccccccCCcc--cccceEeeecCc
Q 047161 652 DDCKRLRSLSELP--SDIKKVRVHGCT 676 (720)
Q Consensus 652 ~~c~~L~~lp~lp--~~L~~L~l~~c~ 676 (720)
++| .++.+|.+. ++|+.|++++|+
T Consensus 186 ~~N-~i~~l~~l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 186 SKN-HISDLRALAGLKNLDVLELFSQE 211 (291)
T ss_dssp CSS-CCCBCGGGTTCTTCSEEEEEEEE
T ss_pred CCC-cCCCChhhccCCCCCEEECcCCc
Confidence 999 466666544 579999999875
No 103
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.53 E-value=8.2e-14 Score=136.62 Aligned_cols=150 Identities=17% Similarity=0.220 Sum_probs=108.8
Q ss_pred eEEEecCCCCCCCCCCCCCCcceEeeCCCCchhHHhhhccCccccCCCCCCCCceeeecCCCCCCCCCCCCcccCccchh
Q 047161 406 RLLQWHGYPLKSLPSSMEMDKTLECNMCYRRIEQFWKGIKNLIRTPDFTGAPNLEELILDGCKRLQNCTSLTTLPREIAT 485 (720)
Q Consensus 406 ~~L~~~~~~~~~lp~~~~~~~l~~L~l~~~~i~~l~~~~~~l~~~~~~~~l~~L~~L~L~~~~~l~~~~~L~~lp~~~~~ 485 (720)
+.++..++.++.+|..+. ..+..|++.+|.+..+.. ..|..+++|++|+|++|. +..++...
T Consensus 14 ~~v~c~~~~l~~iP~~l~-~~l~~L~l~~n~i~~i~~--------~~~~~l~~L~~L~Ls~N~-------i~~~~~~~-- 75 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP-ETITEIRLEQNTIKVIPP--------GAFSPYKKLRRIDLSNNQ-------ISELAPDA-- 75 (220)
T ss_dssp TEEECTTSCCSSCCSSCC-TTCCEEECCSSCCCEECT--------TSSTTCTTCCEEECCSSC-------CCEECTTT--
T ss_pred CEEEcCCCCcCcCCCccC-cCCCEEECCCCcCCCcCH--------hHhhCCCCCCEEECCCCc-------CCCcCHHH--
Confidence 456777777888887654 567777777776654321 147778888888888887 45553322
Q ss_pred hhHHHHhccCCCCcEEeccCCCCCcccCC-CCCCCCCCCEEeccCCCCCcccCcCcCCCCCCCEEeccCcccccCCcccc
Q 047161 486 ESLQKLIELLTGLVFLNLNDCKILVRLPS-TINGWKSLRTVNLSRCSKLENMPESLGQMESLEELDVSGTVIRQPVPSIF 564 (720)
Q Consensus 486 ~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~-~i~~l~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~L~~n~l~~~~~~~~ 564 (720)
|..+++|++|+|++|.+. .+|. .+.++++|++|+|++|.+.+..|..|..+++|++|+|++|.+.++++..+
T Consensus 76 ------~~~l~~L~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 148 (220)
T 2v9t_B 76 ------FQGLRSLNSLVLYGNKIT-ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTF 148 (220)
T ss_dssp ------TTTCSSCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT
T ss_pred ------hhCCcCCCEEECCCCcCC-ccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHH
Confidence 777888888888888744 4554 45778888888888887766667778888888888888888888887766
Q ss_pred CCcCCceEEEeecCCC
Q 047161 565 FPSRILKVYLFVDTRD 580 (720)
Q Consensus 565 ~~~~~L~~L~l~~~~~ 580 (720)
..+++|+.|++.+|.+
T Consensus 149 ~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 149 SPLRAIQTMHLAQNPF 164 (220)
T ss_dssp TTCTTCCEEECCSSCE
T ss_pred hCCCCCCEEEeCCCCc
Confidence 6668888888876654
No 104
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.53 E-value=3.6e-14 Score=150.53 Aligned_cols=136 Identities=19% Similarity=0.089 Sum_probs=67.5
Q ss_pred cCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCCCcccCcCcCCCCCCCEEeccCcccccCCccccCCcCCceEE
Q 047161 494 LLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMPESLGQMESLEELDVSGTVIRQPVPSIFFPSRILKVY 573 (720)
Q Consensus 494 ~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L 573 (720)
.+++|++|+|++|.+.+..|..+.++++|++|+|++|.+....|..|..+++|++|+|++|.+.++++..+..+++|+.|
T Consensus 62 ~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L 141 (361)
T 2xot_A 62 RLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKL 141 (361)
T ss_dssp CCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred cccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEE
Confidence 45555555555555333333445555555555555554333333345555555555555555555544444444555555
Q ss_pred EeecCCCCCCCCCcccccccccccccCCCCcccccCCCCCCCCCCCcccccEEECCCCCCcccc-ccccCCCC--Cceee
Q 047161 574 LFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSLSGLCSLTELNLKKLNLRRNNFVSLR-GTINHLPK--FKHLK 650 (720)
Q Consensus 574 ~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~L~Ls~n~l~~lp-~~i~~l~~--L~~L~ 650 (720)
++++|.+..++...|.+ +..+++| +.|+|++|.++.+| ..+..++. |+.|+
T Consensus 142 ~L~~N~l~~l~~~~~~~---------------------~~~l~~L-----~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~ 195 (361)
T 2xot_A 142 YLSQNQISRFPVELIKD---------------------GNKLPKL-----MLLDLSSNKLKKLPLTDLQKLPAWVKNGLY 195 (361)
T ss_dssp ECCSSCCCSCCGGGTC-------------------------CTTC-----CEEECCSSCCCCCCHHHHHHSCHHHHTTEE
T ss_pred ECCCCcCCeeCHHHhcC---------------------cccCCcC-----CEEECCCCCCCccCHHHhhhccHhhcceEE
Confidence 55444444332222110 1234443 56777777777766 34555655 36677
Q ss_pred ccccc
Q 047161 651 LDDCK 655 (720)
Q Consensus 651 L~~c~ 655 (720)
|++|+
T Consensus 196 l~~N~ 200 (361)
T 2xot_A 196 LHNNP 200 (361)
T ss_dssp CCSSC
T ss_pred ecCCC
Confidence 77664
No 105
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.53 E-value=1.3e-13 Score=135.27 Aligned_cols=149 Identities=21% Similarity=0.285 Sum_probs=107.7
Q ss_pred eeeecCCCCCCCCCCCCcccCccchhhhHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCCCcccCcC
Q 047161 460 EELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMPES 539 (720)
Q Consensus 460 ~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~ 539 (720)
+.++++++. ++.+|.. +. ++|+.|++++|.+.+..|..+..+++|++|+|++|.+.+..|..
T Consensus 14 ~~v~c~~~~-------l~~iP~~---------l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~ 75 (220)
T 2v9t_B 14 NIVDCRGKG-------LTEIPTN---------LP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDA 75 (220)
T ss_dssp TEEECTTSC-------CSSCCSS---------CC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTT
T ss_pred CEEEcCCCC-------cCcCCCc---------cC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHH
Confidence 466676665 5677765 22 57888888888855555557888888888888888776666788
Q ss_pred cCCCCCCCEEeccCcccccCCccccCCcCCceEEEeecCCCCCCCCCcccccccccccccCCCCcccccCCCCCCCCCCC
Q 047161 540 LGQMESLEELDVSGTVIRQPVPSIFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSLSGLCSLT 619 (720)
Q Consensus 540 ~~~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~l~~l~~L~ 619 (720)
|..+++|++|+|++|.+..+++..+..+++|+.|++++|.+..+.+. .+.++++|
T Consensus 76 ~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~------------------------~~~~l~~L- 130 (220)
T 2v9t_B 76 FQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVD------------------------AFQDLHNL- 130 (220)
T ss_dssp TTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT------------------------TTTTCTTC-
T ss_pred hhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHH------------------------HcCCCCCC-
Confidence 88888888888888888888887776668888888877766554332 24445544
Q ss_pred cccccEEECCCCCCccccc-cccCCCCCceeeccccc
Q 047161 620 ELNLKKLNLRRNNFVSLRG-TINHLPKFKHLKLDDCK 655 (720)
Q Consensus 620 ~L~L~~L~Ls~n~l~~lp~-~i~~l~~L~~L~L~~c~ 655 (720)
+.|+|++|.++.+|. .+..+++|+.|+|++|+
T Consensus 131 ----~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 131 ----NLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp ----CEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred ----CEEECCCCcCCEECHHHHhCCCCCCEEEeCCCC
Confidence 667777777777663 46777777788877775
No 106
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.52 E-value=9.2e-14 Score=136.25 Aligned_cols=153 Identities=16% Similarity=0.155 Sum_probs=114.5
Q ss_pred eEEEecCCCCCCCCCCCCCCcceEeeCCCCchhHHhhhccCccccCCCCCCCCceeeecCCCCCCCCCCCCcccCccchh
Q 047161 406 RLLQWHGYPLKSLPSSMEMDKTLECNMCYRRIEQFWKGIKNLIRTPDFTGAPNLEELILDGCKRLQNCTSLTTLPREIAT 485 (720)
Q Consensus 406 ~~L~~~~~~~~~lp~~~~~~~l~~L~l~~~~i~~l~~~~~~l~~~~~~~~l~~L~~L~L~~~~~l~~~~~L~~lp~~~~~ 485 (720)
+.++++++.++.+|..+. ..+..|++++|++..+.. ...|..+++|++|+|++|. +..++...
T Consensus 14 ~~l~~s~n~l~~iP~~~~-~~~~~L~L~~N~l~~~~~-------~~~~~~l~~L~~L~L~~N~-------i~~i~~~~-- 76 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHIP-QYTAELRLNNNEFTVLEA-------TGIFKKLPQLRKINFSNNK-------ITDIEEGA-- 76 (220)
T ss_dssp TEEECCSSCCSSCCSCCC-TTCSEEECCSSCCCEECC-------CCCGGGCTTCCEEECCSSC-------CCEECTTT--
T ss_pred CEeEeCCCCcccCccCCC-CCCCEEEcCCCcCCccCc-------hhhhccCCCCCEEECCCCc-------CCEECHHH--
Confidence 467777777777776553 344667777776654311 0126788889999998887 56666533
Q ss_pred hhHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCCCcccCcCcCCCCCCCEEeccCcccccCCccccC
Q 047161 486 ESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMPESLGQMESLEELDVSGTVIRQPVPSIFF 565 (720)
Q Consensus 486 ~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~L~~n~l~~~~~~~~~ 565 (720)
+..+++|++|+|++|.+.+..|..++++++|++|+|++|.+.+..|..+..+++|++|+|++|.+.+.++..+.
T Consensus 77 ------~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 150 (220)
T 2v70_A 77 ------FEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFD 150 (220)
T ss_dssp ------TTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTT
T ss_pred ------hCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhc
Confidence 77888899999999886665566688889999999998887777778888889999999999988888777776
Q ss_pred CcCCceEEEeecCCCC
Q 047161 566 PSRILKVYLFVDTRDH 581 (720)
Q Consensus 566 ~~~~L~~L~l~~~~~~ 581 (720)
.+++|+.|++.+|.+.
T Consensus 151 ~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 151 TLHSLSTLNLLANPFN 166 (220)
T ss_dssp TCTTCCEEECCSCCEE
T ss_pred CCCCCCEEEecCcCCc
Confidence 6688888888777554
No 107
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.52 E-value=9.8e-16 Score=162.77 Aligned_cols=228 Identities=10% Similarity=0.062 Sum_probs=123.7
Q ss_pred EEecCCCCCC-CCCCCCC-CcceEeeCCCCchhHHhhhccCccccCCCCCCC-CceeeecCCCCCCCCCCCCcccCccch
Q 047161 408 LQWHGYPLKS-LPSSMEM-DKTLECNMCYRRIEQFWKGIKNLIRTPDFTGAP-NLEELILDGCKRLQNCTSLTTLPREIA 484 (720)
Q Consensus 408 L~~~~~~~~~-lp~~~~~-~~l~~L~l~~~~i~~l~~~~~~l~~~~~~~~l~-~L~~L~L~~~~~l~~~~~L~~lp~~~~ 484 (720)
+.++.+.+.. +|..+.. .++++|++++|.+....... -...|..++ +|++|+|++|. +......
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~----l~~~l~~~~~~L~~L~Ls~N~-------l~~~~~~-- 69 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVE----LIQAFANTPASVTSLNLSGNS-------LGFKNSD-- 69 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHH----HHHHHHTCCTTCCEEECCSSC-------GGGSCHH--
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHH----HHHHHHhCCCceeEEECcCCC-------CCHHHHH--
Confidence 4455555553 2333333 34778888887776542100 001245566 78888888876 3333221
Q ss_pred hhhHHHHhccC-CCCcEEeccCCCCCcccCCCC----CCC-CCCCEEeccCCCCCcccCcC----cCC-CCCCCEEeccC
Q 047161 485 TESLQKLIELL-TGLVFLNLNDCKILVRLPSTI----NGW-KSLRTVNLSRCSKLENMPES----LGQ-MESLEELDVSG 553 (720)
Q Consensus 485 ~~~l~~~i~~l-~~L~~L~Ls~n~~~~~lp~~i----~~l-~~L~~L~L~~~~~l~~lp~~----~~~-L~~L~~L~L~~ 553 (720)
.+...+... ++|++|+|++|.+....+..+ ..+ ++|++|++++|.+....+.. +.. .++|++|++++
T Consensus 70 --~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~ 147 (362)
T 3goz_A 70 --ELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRG 147 (362)
T ss_dssp --HHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTT
T ss_pred --HHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccC
Confidence 111123333 788888888887544444433 333 78888888887654433322 333 25788888888
Q ss_pred cccccCCccc-----cCCcCCceEEEeecCCCCCCCCCccccc-----ccccccccCCCCcccccCCC----CCC-CCCC
Q 047161 554 TVIRQPVPSI-----FFPSRILKVYLFVDTRDHRTSSSSWHLW-----FPFSLMQKGSSDSMALMLPS----LSG-LCSL 618 (720)
Q Consensus 554 n~l~~~~~~~-----~~~~~~L~~L~l~~~~~~~~~~~~~~~l-----~~l~~l~l~~~~~~~~~~~~----l~~-l~~L 618 (720)
|.+....... ....++|+.|++++|.+.......+... ..++.++++.+......... +.. .++|
T Consensus 148 N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L 227 (362)
T 3goz_A 148 NDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHV 227 (362)
T ss_dssp SCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTC
T ss_pred CcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCc
Confidence 8777433221 1222378888888777766544333322 46666666666554422111 111 1233
Q ss_pred CcccccEEECCCCCCcccc-----ccccCCCCCceeeccccc
Q 047161 619 TELNLKKLNLRRNNFVSLR-----GTINHLPKFKHLKLDDCK 655 (720)
Q Consensus 619 ~~L~L~~L~Ls~n~l~~lp-----~~i~~l~~L~~L~L~~c~ 655 (720)
+.|+|++|.+...+ ..+..+++|+.|++++|.
T Consensus 228 -----~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~ 264 (362)
T 3goz_A 228 -----VSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDI 264 (362)
T ss_dssp -----CEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHH
T ss_pred -----eEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCC
Confidence 56667777665432 233566677777777764
No 108
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.51 E-value=1.4e-13 Score=135.95 Aligned_cols=150 Identities=17% Similarity=0.214 Sum_probs=111.2
Q ss_pred EEEecCCCCCCCCCCCCCCcceEeeCCCCchhHHhhhccCccccCCCCCCCCceeeecCCCCCCCCCCCCcccCccchhh
Q 047161 407 LLQWHGYPLKSLPSSMEMDKTLECNMCYRRIEQFWKGIKNLIRTPDFTGAPNLEELILDGCKRLQNCTSLTTLPREIATE 486 (720)
Q Consensus 407 ~L~~~~~~~~~lp~~~~~~~l~~L~l~~~~i~~l~~~~~~l~~~~~~~~l~~L~~L~L~~~~~l~~~~~L~~lp~~~~~~ 486 (720)
.++.+++.+..+|..+. .+++.|++++|.+..+. ...|..+++|++|+|++|. +..+|...
T Consensus 23 ~v~c~~~~l~~ip~~~~-~~L~~L~Ls~n~i~~~~--------~~~~~~l~~L~~L~L~~N~-------l~~i~~~~--- 83 (229)
T 3e6j_A 23 TVDCRSKRHASVPAGIP-TNAQILYLHDNQITKLE--------PGVFDSLINLKELYLGSNQ-------LGALPVGV--- 83 (229)
T ss_dssp EEECTTSCCSSCCSCCC-TTCSEEECCSSCCCCCC--------TTTTTTCTTCCEEECCSSC-------CCCCCTTT---
T ss_pred EeEccCCCcCccCCCCC-CCCCEEEcCCCccCccC--------HHHhhCccCCcEEECCCCC-------CCCcChhh---
Confidence 45556666666665543 55666666666654431 1237788899999999887 56777553
Q ss_pred hHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCCCcccCcCcCCCCCCCEEeccCcccccCCccccCC
Q 047161 487 SLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMPESLGQMESLEELDVSGTVIRQPVPSIFFP 566 (720)
Q Consensus 487 ~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~L~~n~l~~~~~~~~~~ 566 (720)
+..+++|++|+|++|.+.+..+..+..+++|++|+|++|. +..+|..+..+++|++|++++|.+.++++..+..
T Consensus 84 -----~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 157 (229)
T 3e6j_A 84 -----FDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNK-LTELPRGIERLTHLTHLALDQNQLKSIPHGAFDR 157 (229)
T ss_dssp -----TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTT
T ss_pred -----cccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCc-ccccCcccccCCCCCEEECCCCcCCccCHHHHhC
Confidence 6778899999999988554444556889999999999886 4478888888999999999999998888877766
Q ss_pred cCCceEEEeecCCCC
Q 047161 567 SRILKVYLFVDTRDH 581 (720)
Q Consensus 567 ~~~L~~L~l~~~~~~ 581 (720)
+++|+.|++.+|.+.
T Consensus 158 l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 158 LSSLTHAYLFGNPWD 172 (229)
T ss_dssp CTTCCEEECTTSCBC
T ss_pred CCCCCEEEeeCCCcc
Confidence 688898888776544
No 109
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.51 E-value=1e-13 Score=146.98 Aligned_cols=163 Identities=13% Similarity=0.114 Sum_probs=118.7
Q ss_pred eEEEecCCCCCCCCCCCCCCcceEeeCCCCchhHHhhhccCccccCCCC-CCCCceeeecCCCCCCCCCCCCcccCccch
Q 047161 406 RLLQWHGYPLKSLPSSMEMDKTLECNMCYRRIEQFWKGIKNLIRTPDFT-GAPNLEELILDGCKRLQNCTSLTTLPREIA 484 (720)
Q Consensus 406 ~~L~~~~~~~~~lp~~~~~~~l~~L~l~~~~i~~l~~~~~~l~~~~~~~-~l~~L~~L~L~~~~~l~~~~~L~~lp~~~~ 484 (720)
+.++.+++.+..+|..+. ..+..|++++|++..+... .|. .+++|++|+|++|. +..++...
T Consensus 21 ~~l~c~~~~l~~iP~~~~-~~l~~L~Ls~N~l~~l~~~--------~~~~~l~~L~~L~L~~N~-------i~~i~~~~- 83 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLP-SYTALLDLSHNNLSRLRAE--------WTPTRLTNLHSLLLSHNH-------LNFISSEA- 83 (361)
T ss_dssp TEEECCSSCCSSCCSSCC-TTCSEEECCSSCCCEECTT--------SSSSCCTTCCEEECCSSC-------CCEECTTT-
T ss_pred CEEEeCCCCcCccCccCC-CCCCEEECCCCCCCccChh--------hhhhcccccCEEECCCCc-------CCccChhh-
Confidence 456667777777776543 3466677777766554222 255 78889999998887 56776543
Q ss_pred hhhHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCCCcccCcCcCCCCCCCEEeccCcccccCCcccc
Q 047161 485 TESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMPESLGQMESLEELDVSGTVIRQPVPSIF 564 (720)
Q Consensus 485 ~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~L~~n~l~~~~~~~~ 564 (720)
|..+++|++|+|++|.+....+..+.++++|++|+|++|.+....|..|..+++|++|+|++|.+..+++..+
T Consensus 84 -------~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~ 156 (361)
T 2xot_A 84 -------FVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELI 156 (361)
T ss_dssp -------TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGT
T ss_pred -------ccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHh
Confidence 7788899999999988655545568888999999999887776667788889999999999999888888765
Q ss_pred ---CCcCCceEEEeecCCCCCCCCCcccccc
Q 047161 565 ---FPSRILKVYLFVDTRDHRTSSSSWHLWF 592 (720)
Q Consensus 565 ---~~~~~L~~L~l~~~~~~~~~~~~~~~l~ 592 (720)
..+++|+.|++++|.+..++...+..+.
T Consensus 157 ~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~ 187 (361)
T 2xot_A 157 KDGNKLPKLMLLDLSSNKLKKLPLTDLQKLP 187 (361)
T ss_dssp C----CTTCCEEECCSSCCCCCCHHHHHHSC
T ss_pred cCcccCCcCCEEECCCCCCCccCHHHhhhcc
Confidence 3358888898888877776655444443
No 110
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.50 E-value=9.5e-16 Score=164.47 Aligned_cols=172 Identities=14% Similarity=0.166 Sum_probs=96.9
Q ss_pred chhccCCcceEEEeccccCCc--------ccCccccceEEEecCCCCCCCCCCCCCCcceEeeCCCCchhHHhhhccCcc
Q 047161 377 AFLKMTNLRLLKIHNLQLPAG--------LESLSDELRLLQWHGYPLKSLPSSMEMDKTLECNMCYRRIEQFWKGIKNLI 448 (720)
Q Consensus 377 ~~~~l~~L~~L~l~~~~l~~~--------~~~l~~~l~~L~~~~~~~~~lp~~~~~~~l~~L~l~~~~i~~l~~~~~~l~ 448 (720)
.+..+++|+.|++++|.+... +.. ...++.|++++|.+..+...+. ..+..+.
T Consensus 27 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~-~~~L~~L~Ls~~~~~~l~~~~~-----------~~~~~l~------- 87 (386)
T 2ca6_A 27 VLLEDDSVKEIVLSGNTIGTEAARWLSENIAS-KKDLEIAEFSDIFTGRVKDEIP-----------EALRLLL------- 87 (386)
T ss_dssp HHHHCSCCCEEECTTSEECHHHHHHHHHTTTT-CTTCCEEECCSCCTTSCGGGSH-----------HHHHHHH-------
T ss_pred HHhcCCCccEEECCCCCCCHHHHHHHHHHHHh-CCCccEEeCcccccCccccchh-----------HHHHHHH-------
Confidence 566778899999998877432 222 2357777777765554432110 0001110
Q ss_pred ccCCCCCCCCceeeecCCCCCCCCCCCCcccCccchhhhHHHHhccCCCCcEEeccCCCCCcc----cCCCCCCC-----
Q 047161 449 RTPDFTGAPNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILVR----LPSTINGW----- 519 (720)
Q Consensus 449 ~~~~~~~l~~L~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~----lp~~i~~l----- 519 (720)
..+..+++|++|+|++|. +.. .....++..+..+++|++|+|++|.+... ++..+..+
T Consensus 88 --~~l~~~~~L~~L~Ls~n~-------l~~----~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~ 154 (386)
T 2ca6_A 88 --QALLKCPKLHTVRLSDNA-------FGP----TAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKK 154 (386)
T ss_dssp --HHHTTCTTCCEEECCSCC-------CCT----TTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred --HHHhhCCcccEEECCCCc-------CCH----HHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhh
Confidence 124566777777777765 221 01113344467777777777777775322 22223333
Q ss_pred ----CCCCEEeccCCCCC-cccC---cCcCCCCCCCEEeccCcccc--c---CCccccCCcCCceEEEeecCCC
Q 047161 520 ----KSLRTVNLSRCSKL-ENMP---ESLGQMESLEELDVSGTVIR--Q---PVPSIFFPSRILKVYLFVDTRD 580 (720)
Q Consensus 520 ----~~L~~L~L~~~~~l-~~lp---~~~~~L~~L~~L~L~~n~l~--~---~~~~~~~~~~~L~~L~l~~~~~ 580 (720)
++|++|++++|.+. ..+| ..+..+++|++|++++|.+. + ..+..+..+++|+.|++++|.+
T Consensus 155 ~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l 228 (386)
T 2ca6_A 155 AKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTF 228 (386)
T ss_dssp HHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCC
T ss_pred cccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCC
Confidence 77777777777654 3344 34556777777777777766 2 2231223337777777766654
No 111
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.50 E-value=4.2e-14 Score=159.34 Aligned_cols=170 Identities=15% Similarity=0.168 Sum_probs=140.2
Q ss_pred hccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCCCcccCcCcCCCCCCCEEeccCcccccCCccccCCcCCce
Q 047161 492 IELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMPESLGQMESLEELDVSGTVIRQPVPSIFFPSRILK 571 (720)
Q Consensus 492 i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~ 571 (720)
+..+++|+.|++++|. +..+| .++.+++|++|+|++|.+.+ +|. +..|++|+.|+|++|.+.+++ .+. .+++|+
T Consensus 39 ~~~L~~L~~L~l~~n~-i~~l~-~l~~l~~L~~L~Ls~N~l~~-~~~-l~~l~~L~~L~Ls~N~l~~l~-~l~-~l~~L~ 112 (605)
T 1m9s_A 39 QNELNSIDQIIANNSD-IKSVQ-GIQYLPNVTKLFLNGNKLTD-IKP-LTNLKNLGWLFLDENKIKDLS-SLK-DLKKLK 112 (605)
T ss_dssp HHHHTTCCCCBCTTCC-CCCCT-TGGGCTTCCEEECTTSCCCC-CGG-GGGCTTCCEEECCSSCCCCCT-TST-TCTTCC
T ss_pred hhcCCCCCEEECcCCC-CCCCh-HHccCCCCCEEEeeCCCCCC-Chh-hccCCCCCEEECcCCCCCCCh-hhc-cCCCCC
Confidence 5678999999999998 56666 58999999999999997554 444 899999999999999999865 344 459999
Q ss_pred EEEeecCCCCCCCCCcccccccccccccCCCCcccccCCCCCCCCCCCcccccEEECCCCCCccccccccCCCCCceeec
Q 047161 572 VYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSLSGLCSLTELNLKKLNLRRNNFVSLRGTINHLPKFKHLKL 651 (720)
Q Consensus 572 ~L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L 651 (720)
.|++++|.+..+ ..+..+..|+.|.++.+.+... +.+..+++| +.|+|++|.+..++. +..+++|+.|+|
T Consensus 113 ~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L-----~~L~Ls~N~l~~~~~-l~~l~~L~~L~L 182 (605)
T 1m9s_A 113 SLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKL-----DTLSLEDNQISDIVP-LAGLTKLQNLYL 182 (605)
T ss_dssp EEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTC-----SEEECCSSCCCCCGG-GTTCTTCCEEEC
T ss_pred EEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCC-----CEEECcCCcCCCchh-hccCCCCCEEEC
Confidence 999999998876 4588889999999998876654 557777766 788999999998876 899999999999
Q ss_pred cccccccccCCcc--cccceEeeecCccc
Q 047161 652 DDCKRLRSLSELP--SDIKKVRVHGCTSL 678 (720)
Q Consensus 652 ~~c~~L~~lp~lp--~~L~~L~l~~c~~L 678 (720)
++| .+..+|.+. ++|+.|++++|+..
T Consensus 183 s~N-~i~~l~~l~~l~~L~~L~L~~N~l~ 210 (605)
T 1m9s_A 183 SKN-HISDLRALAGLKNLDVLELFSQECL 210 (605)
T ss_dssp CSS-CCCBCGGGTTCTTCSEEECCSEEEE
T ss_pred cCC-CCCCChHHccCCCCCEEEccCCcCc
Confidence 999 466666544 57999999988643
No 112
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.49 E-value=3.5e-13 Score=132.13 Aligned_cols=149 Identities=19% Similarity=0.224 Sum_probs=105.1
Q ss_pred eeeecCCCCCCCCCCCCcccCccchhhhHHHHhccCCCCcEEeccCCCCCcccC-CCCCCCCCCCEEeccCCCCCcccCc
Q 047161 460 EELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILVRLP-STINGWKSLRTVNLSRCSKLENMPE 538 (720)
Q Consensus 460 ~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp-~~i~~l~~L~~L~L~~~~~l~~lp~ 538 (720)
+.+++++|. ++.+|.. + ...+++|+|++|.+.+..| ..++++++|++|+|++|.+.+..|.
T Consensus 14 ~~l~~s~n~-------l~~iP~~---------~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~ 75 (220)
T 2v70_A 14 TTVDCSNQK-------LNKIPEH---------I--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEG 75 (220)
T ss_dssp TEEECCSSC-------CSSCCSC---------C--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTT
T ss_pred CEeEeCCCC-------cccCccC---------C--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHH
Confidence 477777776 5667765 2 2356788888888544434 3467888888888888876655555
Q ss_pred CcCCCCCCCEEeccCcccccCCccccCCcCCceEEEeecCCCCCCCCCcccccccccccccCCCCcccccCCCCCCCCCC
Q 047161 539 SLGQMESLEELDVSGTVIRQPVPSIFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSLSGLCSL 618 (720)
Q Consensus 539 ~~~~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~l~~l~~L 618 (720)
.|..+++|++|++++|.+.+.++..+..+++|+.|++++|.+..+.+. .+.++++|
T Consensus 76 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~------------------------~~~~l~~L 131 (220)
T 2v70_A 76 AFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGND------------------------SFIGLSSV 131 (220)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTT------------------------SSTTCTTC
T ss_pred HhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHh------------------------HcCCCccC
Confidence 788888888888888888888887776668888888877665554333 24445544
Q ss_pred CcccccEEECCCCCCccc-cccccCCCCCceeeccccc
Q 047161 619 TELNLKKLNLRRNNFVSL-RGTINHLPKFKHLKLDDCK 655 (720)
Q Consensus 619 ~~L~L~~L~Ls~n~l~~l-p~~i~~l~~L~~L~L~~c~ 655 (720)
+.|+|++|.++.+ |..+..+++|+.|+|++|+
T Consensus 132 -----~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 132 -----RLLSLYDNQITTVAPGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp -----SEEECTTSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred -----CEEECCCCcCCEECHHHhcCCCCCCEEEecCcC
Confidence 5677777777766 5667777777777777775
No 113
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.48 E-value=6.4e-14 Score=141.43 Aligned_cols=150 Identities=18% Similarity=0.253 Sum_probs=88.5
Q ss_pred cCCCCCCCCceeeecCCCCCCCCCCCCcccCccchhhhHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccC
Q 047161 450 TPDFTGAPNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSR 529 (720)
Q Consensus 450 ~~~~~~l~~L~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~ 529 (720)
++.+..+++|++|++++|. +..++ . ++.+++|++|++++|.+ ..+|. ++++++|++|++++
T Consensus 34 ~~~~~~l~~L~~L~l~~n~-------i~~l~-~---------l~~l~~L~~L~L~~N~i-~~~~~-l~~l~~L~~L~L~~ 94 (263)
T 1xeu_A 34 LVSQKELSGVQNFNGDNSN-------IQSLA-G---------MQFFTNLKELHLSHNQI-SDLSP-LKDLTKLEELSVNR 94 (263)
T ss_dssp EECHHHHTTCSEEECTTSC-------CCCCT-T---------GGGCTTCCEEECCSSCC-CCCGG-GTTCSSCCEEECCS
T ss_pred ccchhhcCcCcEEECcCCC-------cccch-H---------HhhCCCCCEEECCCCcc-CCChh-hccCCCCCEEECCC
Confidence 3445566666666666664 34444 2 55566666666666653 33443 66666666666666
Q ss_pred CCCCcccCcCcCCCCCCCEEeccCcccccCCccccCCcCCceEEEeecCCCCCCCCCcccccccccccccCCCCcccccC
Q 047161 530 CSKLENMPESLGQMESLEELDVSGTVIRQPVPSIFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALML 609 (720)
Q Consensus 530 ~~~l~~lp~~~~~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~ 609 (720)
|.+ ..+|.... ++|++|++++|.+.+.+ .+ ..+++|+.|++++|.+..+
T Consensus 95 N~l-~~l~~~~~--~~L~~L~L~~N~l~~~~-~l-~~l~~L~~L~Ls~N~i~~~-------------------------- 143 (263)
T 1xeu_A 95 NRL-KNLNGIPS--ACLSRLFLDNNELRDTD-SL-IHLKNLEILSIRNNKLKSI-------------------------- 143 (263)
T ss_dssp SCC-SCCTTCCC--SSCCEEECCSSCCSBSG-GG-TTCTTCCEEECTTSCCCBC--------------------------
T ss_pred Ccc-CCcCcccc--CcccEEEccCCccCCCh-hh-cCcccccEEECCCCcCCCC--------------------------
Confidence 643 33443222 56666666666666543 22 2236666666655544332
Q ss_pred CCCCCCCCCCcccccEEECCCCCCccccccccCCCCCceeeccccc
Q 047161 610 PSLSGLCSLTELNLKKLNLRRNNFVSLRGTINHLPKFKHLKLDDCK 655 (720)
Q Consensus 610 ~~l~~l~~L~~L~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~ 655 (720)
+.+..+++| +.|++++|.++.+ ..+..+++|+.|++++|+
T Consensus 144 ~~l~~l~~L-----~~L~L~~N~i~~~-~~l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 144 VMLGFLSKL-----EVLDLHGNEITNT-GGLTRLKKVNWIDLTGQK 183 (263)
T ss_dssp GGGGGCTTC-----CEEECTTSCCCBC-TTSTTCCCCCEEEEEEEE
T ss_pred hHHccCCCC-----CEEECCCCcCcch-HHhccCCCCCEEeCCCCc
Confidence 234455554 6778888888777 567788888888888875
No 114
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.48 E-value=4.9e-13 Score=131.97 Aligned_cols=149 Identities=18% Similarity=0.222 Sum_probs=117.2
Q ss_pred CceeeecCCCCCCCCCCCCcccCccchhhhHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCCCcccC
Q 047161 458 NLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMP 537 (720)
Q Consensus 458 ~L~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp 537 (720)
.-+.++.+++. +..+|.. + .++|++|+|++|.+.+..|..+.++++|++|+|++|.+ +.+|
T Consensus 20 s~~~v~c~~~~-------l~~ip~~---------~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l-~~i~ 80 (229)
T 3e6j_A 20 SGTTVDCRSKR-------HASVPAG---------I--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALP 80 (229)
T ss_dssp ETTEEECTTSC-------CSSCCSC---------C--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCC
T ss_pred eCCEeEccCCC-------cCccCCC---------C--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCC-CCcC
Confidence 46778887766 6788876 3 37899999999997777788899999999999999875 4455
Q ss_pred -cCcCCCCCCCEEeccCcccccCCccccCCcCCceEEEeecCCCCCCCCCcccccccccccccCCCCcccccCCCCCCCC
Q 047161 538 -ESLGQMESLEELDVSGTVIRQPVPSIFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSLSGLC 616 (720)
Q Consensus 538 -~~~~~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~l~~l~ 616 (720)
..+..+++|++|+|++|.+.++++..+..+++|+.|++++|.+..++ ..+..++
T Consensus 81 ~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp-------------------------~~~~~l~ 135 (229)
T 3e6j_A 81 VGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELP-------------------------RGIERLT 135 (229)
T ss_dssp TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCSCC-------------------------TTGGGCT
T ss_pred hhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCcccccC-------------------------cccccCC
Confidence 55789999999999999999998887776689999998777654322 1244455
Q ss_pred CCCcccccEEECCCCCCcccc-ccccCCCCCceeeccccc
Q 047161 617 SLTELNLKKLNLRRNNFVSLR-GTINHLPKFKHLKLDDCK 655 (720)
Q Consensus 617 ~L~~L~L~~L~Ls~n~l~~lp-~~i~~l~~L~~L~L~~c~ 655 (720)
+| +.|+|++|.++.+| ..+..+++|+.|++++|+
T Consensus 136 ~L-----~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 136 HL-----THLALDQNQLKSIPHGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp TC-----SEEECCSSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred CC-----CEEECCCCcCCccCHHHHhCCCCCCEEEeeCCC
Confidence 55 77888899888887 457888999999998886
No 115
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.47 E-value=3.7e-15 Score=156.62 Aligned_cols=200 Identities=17% Similarity=0.206 Sum_probs=141.9
Q ss_pred CcceEeeCCCCchhHHhhhccCccccCCCCCCCCceeeecCCCCCCCCCCCCcccCccchhhhHHHHhccCCCCcEEecc
Q 047161 425 DKTLECNMCYRRIEQFWKGIKNLIRTPDFTGAPNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLN 504 (720)
Q Consensus 425 ~~l~~L~l~~~~i~~l~~~~~~l~~~~~~~~l~~L~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls 504 (720)
..++.+++.++.+... .+.+..+++|++|++++|. +. ...++..+..+++|++|+++
T Consensus 70 ~~l~~L~l~~n~l~~~---------~~~~~~~~~L~~L~L~~~~-------l~-------~~~~~~~~~~~~~L~~L~L~ 126 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQP---------LAEHFSPFRVQHMDLSNSV-------IE-------VSTLHGILSQCSKLQNLSLE 126 (336)
T ss_dssp TTCSEEECTTCEECSC---------CCSCCCCBCCCEEECTTCE-------EC-------HHHHHHHHTTBCCCSEEECT
T ss_pred ccceEEEcCCcccccc---------chhhccCCCCCEEEccCCC-------cC-------HHHHHHHHhhCCCCCEEeCc
Confidence 4677788887766432 3457788999999999875 11 12244448889999999999
Q ss_pred CCCCCcccCCCCCCCCCCCEEeccCCCCCc--ccCcCcCCCCCCCEEeccCc-ccccC-CccccCCcC-CceEEEeecCC
Q 047161 505 DCKILVRLPSTINGWKSLRTVNLSRCSKLE--NMPESLGQMESLEELDVSGT-VIRQP-VPSIFFPSR-ILKVYLFVDTR 579 (720)
Q Consensus 505 ~n~~~~~lp~~i~~l~~L~~L~L~~~~~l~--~lp~~~~~L~~L~~L~L~~n-~l~~~-~~~~~~~~~-~L~~L~l~~~~ 579 (720)
+|.+.+..|..++.+++|++|++++|..++ .+|..+.++++|++|++++| .+.+. .+.....++ +|+.|++++|.
T Consensus 127 ~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~ 206 (336)
T 2ast_B 127 GLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYR 206 (336)
T ss_dssp TCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCG
T ss_pred CcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCc
Confidence 998777788888889999999999984343 36777888999999999999 77753 233333347 89999886653
Q ss_pred CCCCCCCcccccccccccccCCCCcccccCC-CCCCCCCCCcccccEEECCCCC-Cc-cccccccCCCCCceeecccccc
Q 047161 580 DHRTSSSSWHLWFPFSLMQKGSSDSMALMLP-SLSGLCSLTELNLKKLNLRRNN-FV-SLRGTINHLPKFKHLKLDDCKR 656 (720)
Q Consensus 580 ~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~-~l~~l~~L~~L~L~~L~Ls~n~-l~-~lp~~i~~l~~L~~L~L~~c~~ 656 (720)
.. ..+..++ .+..+++| +.|++++|. ++ ..+..+..+++|++|++++|..
T Consensus 207 ~~----------------------~~~~~l~~~~~~~~~L-----~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~ 259 (336)
T 2ast_B 207 KN----------------------LQKSDLSTLVRRCPNL-----VHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYD 259 (336)
T ss_dssp GG----------------------SCHHHHHHHHHHCTTC-----SEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTT
T ss_pred cc----------------------CCHHHHHHHHhhCCCC-----CEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCC
Confidence 10 0101111 13445555 788999998 55 5667889999999999999963
Q ss_pred cc-----ccCCcccccceEeeecC
Q 047161 657 LR-----SLSELPSDIKKVRVHGC 675 (720)
Q Consensus 657 L~-----~lp~lp~~L~~L~l~~c 675 (720)
+. .+..+ ++|+.|++.+|
T Consensus 260 ~~~~~~~~l~~~-~~L~~L~l~~~ 282 (336)
T 2ast_B 260 IIPETLLELGEI-PTLKTLQVFGI 282 (336)
T ss_dssp CCGGGGGGGGGC-TTCCEEECTTS
T ss_pred CCHHHHHHHhcC-CCCCEEeccCc
Confidence 32 23333 56999999999
No 116
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.45 E-value=4.8e-15 Score=157.39 Aligned_cols=250 Identities=12% Similarity=0.046 Sum_probs=163.0
Q ss_pred eEEEeccccCCc---ccCccccceEEEecCCCCCCCCC-----CC-CCC-cceEeeCCCCchhHHhhhccCccccCCCCC
Q 047161 386 LLKIHNLQLPAG---LESLSDELRLLQWHGYPLKSLPS-----SM-EMD-KTLECNMCYRRIEQFWKGIKNLIRTPDFTG 455 (720)
Q Consensus 386 ~L~l~~~~l~~~---~~~l~~~l~~L~~~~~~~~~lp~-----~~-~~~-~l~~L~l~~~~i~~l~~~~~~l~~~~~~~~ 455 (720)
+++++.+.+... +...+..++.|++++|.++..+. .+ ... ++++|++++|.+....... +. ..+..
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~--l~--~~l~~ 77 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDE--LV--QILAA 77 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHH--HH--HHHHT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHH--HH--HHHhc
Confidence 345666666432 34456669999999999887763 22 233 7899999999886542110 00 00122
Q ss_pred -CCCceeeecCCCCCCCCCCCCcccCccchhhhHHHHhccC-CCCcEEeccCCCCCcccCCC----CCC-CCCCCEEecc
Q 047161 456 -APNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELL-TGLVFLNLNDCKILVRLPST----ING-WKSLRTVNLS 528 (720)
Q Consensus 456 -l~~L~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l-~~L~~L~Ls~n~~~~~lp~~----i~~-l~~L~~L~L~ 528 (720)
+++|++|+|++|. +...+.. .+...+..+ ++|++|+|++|.+....+.. +.. .++|++|+|+
T Consensus 78 ~~~~L~~L~Ls~n~-------l~~~~~~----~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls 146 (362)
T 3goz_A 78 IPANVTSLNLSGNF-------LSYKSSD----ELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLR 146 (362)
T ss_dssp SCTTCCEEECCSSC-------GGGSCHH----HHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECT
T ss_pred cCCCccEEECcCCc-------CChHHHH----HHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEcc
Confidence 2789999999987 3433322 222235555 89999999999854443333 233 3689999999
Q ss_pred CCCCCc----ccCcCcCCCC-CCCEEeccCcccccCCccccC----Cc-CCceEEEeecCCCCCCCCC----cccc-ccc
Q 047161 529 RCSKLE----NMPESLGQME-SLEELDVSGTVIRQPVPSIFF----PS-RILKVYLFVDTRDHRTSSS----SWHL-WFP 593 (720)
Q Consensus 529 ~~~~l~----~lp~~~~~L~-~L~~L~L~~n~l~~~~~~~~~----~~-~~L~~L~l~~~~~~~~~~~----~~~~-l~~ 593 (720)
+|.+.. .++..+..++ +|++|++++|.+.+..+..+. .. ++|+.|++++|.+...... .+.. ...
T Consensus 147 ~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~ 226 (362)
T 3goz_A 147 GNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNH 226 (362)
T ss_dssp TSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTT
T ss_pred CCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCC
Confidence 987653 3444555665 899999999999876653222 22 5899999999987763222 2223 347
Q ss_pred ccccccCCCCcccccCC----CCCCCCCCCcccccEEECCCCCC--------ccccccccCCCCCceeeccccc
Q 047161 594 FSLMQKGSSDSMALMLP----SLSGLCSLTELNLKKLNLRRNNF--------VSLRGTINHLPKFKHLKLDDCK 655 (720)
Q Consensus 594 l~~l~l~~~~~~~~~~~----~l~~l~~L~~L~L~~L~Ls~n~l--------~~lp~~i~~l~~L~~L~L~~c~ 655 (720)
++.++++.|........ .+..+++| +.|++++|.+ ..++..+..+++|+.|++++|+
T Consensus 227 L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L-----~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 227 VVSLNLCLNCLHGPSLENLKLLKDSLKHL-----QTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp CCEEECCSSCCCCCCHHHHHHTTTTTTTC-----SEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred ceEEECcCCCCCcHHHHHHHHHHhcCCCc-----cEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence 88888888876554331 24555655 7788888873 3445567788899999999986
No 117
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.45 E-value=1.5e-13 Score=132.38 Aligned_cols=110 Identities=18% Similarity=0.190 Sum_probs=73.6
Q ss_pred CCCCCCCceeeecCCCCCCCCCCCCcc-cCccchhhhHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCC
Q 047161 452 DFTGAPNLEELILDGCKRLQNCTSLTT-LPREIATESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRC 530 (720)
Q Consensus 452 ~~~~l~~L~~L~L~~~~~l~~~~~L~~-lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~ 530 (720)
.+..+++|++|++++|. +.. .+.. ++.+++|++|++++|.+.+..|..++.+++|++|++++|
T Consensus 83 ~l~~l~~L~~L~l~~n~-------l~~~~~~~---------l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n 146 (197)
T 4ezg_A 83 PISGLSNLERLRIMGKD-------VTSDKIPN---------LSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYN 146 (197)
T ss_dssp GGTTCTTCCEEEEECTT-------CBGGGSCC---------CTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSC
T ss_pred hhhcCCCCCEEEeECCc-------cCcccChh---------hcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCC
Confidence 35667777777777776 333 3343 666777777777777766666667777777777777777
Q ss_pred CCCcccCcCcCCCCCCCEEeccCcccccCCccccCCcCCceEEEeecCCC
Q 047161 531 SKLENMPESLGQMESLEELDVSGTVIRQPVPSIFFPSRILKVYLFVDTRD 580 (720)
Q Consensus 531 ~~l~~lp~~~~~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~ 580 (720)
..++.+| .+..+++|++|++++|.+.+.+ .+.. +++|+.|++.+|.+
T Consensus 147 ~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~-~l~~-l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 147 GAITDIM-PLKTLPELKSLNIQFDGVHDYR-GIED-FPKLNQLYAFSQTI 193 (197)
T ss_dssp TBCCCCG-GGGGCSSCCEEECTTBCCCCCT-TGGG-CSSCCEEEECBC--
T ss_pred CCccccH-hhcCCCCCCEEECCCCCCcChH-Hhcc-CCCCCEEEeeCccc
Confidence 6455665 5777777777777777777655 3333 37777777766654
No 118
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.42 E-value=6.9e-14 Score=161.59 Aligned_cols=121 Identities=16% Similarity=0.063 Sum_probs=89.1
Q ss_pred CCCCCCCceeeecCCCCCCCCCCCCcccCccchhhhHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCC
Q 047161 452 DFTGAPNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCS 531 (720)
Q Consensus 452 ~~~~l~~L~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~ 531 (720)
.|..+++|+.|+|++|. +..+|.. +..+++|++|+|++|.+ ..+|.+|++|++|++|+|++|.
T Consensus 219 ~~~~l~~L~~L~Ls~n~-------l~~l~~~---------~~~l~~L~~L~Ls~N~l-~~lp~~~~~l~~L~~L~Ls~N~ 281 (727)
T 4b8c_D 219 SKYDDQLWHALDLSNLQ-------IFNISAN---------IFKYDFLTRLYLNGNSL-TELPAEIKNLSNLRVLDLSHNR 281 (727)
T ss_dssp ---CCCCCCEEECTTSC-------CSCCCGG---------GGGCCSCSCCBCTTSCC-SCCCGGGGGGTTCCEEECTTSC
T ss_pred hhccCCCCcEEECCCCC-------CCCCChh---------hcCCCCCCEEEeeCCcC-cccChhhhCCCCCCEEeCcCCc
Confidence 36777888888888877 4667766 56788888888888874 4788888888888888888876
Q ss_pred CCcccCcCcCCCCCCCEEeccCcccccCCccccCCcCCceEEEeecCCCCCCCCCccccc
Q 047161 532 KLENMPESLGQMESLEELDVSGTVIRQPVPSIFFPSRILKVYLFVDTRDHRTSSSSWHLW 591 (720)
Q Consensus 532 ~l~~lp~~~~~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l 591 (720)
+. .+|..+++|++|++|+|++|.+..+|..+.. +++|+.|++++|.+.+..+..+..+
T Consensus 282 l~-~lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~-l~~L~~L~L~~N~l~~~~p~~~~~~ 339 (727)
T 4b8c_D 282 LT-SLPAELGSCFQLKYFYFFDNMVTTLPWEFGN-LCNLQFLGVEGNPLEKQFLKILTEK 339 (727)
T ss_dssp CS-SCCSSGGGGTTCSEEECCSSCCCCCCSSTTS-CTTCCCEECTTSCCCSHHHHHHHHH
T ss_pred CC-ccChhhcCCCCCCEEECCCCCCCccChhhhc-CCCccEEeCCCCccCCCChHHHhhc
Confidence 54 7788888888888888888888777666444 4888888888887777655555443
No 119
>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222}
Probab=99.41 E-value=7.1e-15 Score=134.63 Aligned_cols=70 Identities=23% Similarity=0.407 Sum_probs=65.9
Q ss_pred CceEeecCCCCCCCCcccHHHHHHHHhccceeEEeccCcccchhhhhhhccc-------------------Ccccccccc
Q 047161 1 GVKIFEDHKELERGKAVSPGLFKAIEESRFSVVVFSRNYAYSTWCLDELAKI-------------------PTVVRKQTR 61 (720)
Q Consensus 1 gi~~f~d~~~l~~g~~~~~~l~~ai~~s~~~ivv~S~~ya~s~wcl~el~~i-------------------p~~vr~~~~ 61 (720)
||++|+|++++++|+.|.++|.+||++|+++|||+|++|+.|.||++|++++ |++||+|.|
T Consensus 47 gi~v~~D~~~l~~G~~~~~~i~~ai~~s~~~i~v~S~~y~~S~wc~~El~~~~~~~~~~~~~iiPV~~~v~p~~v~~~~~ 126 (154)
T 3h16_A 47 GAEVWYDDFSLRPGDSLRRSIDKGLGSSRFGIVVLSTHFFKKEWPQKELDGLFQLESSGRSRILPIWHKVSKDEVASFSP 126 (154)
T ss_dssp TCCEECGGGEECTTCCHHHHHHHHHTSEEEEEEEEEHHHHTTCCCHHHHHHHTCCCTTSCCCEEEEEESCCTGGGTTTCC
T ss_pred CCcEEEcHHhCCCccHHHHHHHHHHHhCcEEEEEeCcchhcChHHHHHHHHHHHHHhcCCCEEEEEEecCCHHHHhhCCc
Confidence 8999999989999999999999999999999999999999999999999876 999999999
Q ss_pred hHHHHHHHH
Q 047161 62 SFHEAFAKH 70 (720)
Q Consensus 62 ~~~~~~~~~ 70 (720)
.|+++|..+
T Consensus 127 ~~~~~~~~~ 135 (154)
T 3h16_A 127 TMADKLAFN 135 (154)
T ss_dssp CCCSSCCEE
T ss_pred cHHHHHhhh
Confidence 999886554
No 120
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.41 E-value=7.1e-13 Score=133.71 Aligned_cols=170 Identities=19% Similarity=0.142 Sum_probs=129.7
Q ss_pred cceEEEecCCCCCCCCCCCCCCcceEeeCCCCchhHHhhhccCccccCCCCCCCCceeeecCCCCCCCCCCCCcccCccc
Q 047161 404 ELRLLQWHGYPLKSLPSSMEMDKTLECNMCYRRIEQFWKGIKNLIRTPDFTGAPNLEELILDGCKRLQNCTSLTTLPREI 483 (720)
Q Consensus 404 ~l~~L~~~~~~~~~lp~~~~~~~l~~L~l~~~~i~~l~~~~~~l~~~~~~~~l~~L~~L~L~~~~~l~~~~~L~~lp~~~ 483 (720)
.+..+.+.++.+..++......+++.|+++++.+..+ +.+..+++|++|+|++|. +..++.
T Consensus 20 ~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~l----------~~l~~l~~L~~L~L~~N~-------i~~~~~-- 80 (263)
T 1xeu_A 20 NAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSL----------AGMQFFTNLKELHLSHNQ-------ISDLSP-- 80 (263)
T ss_dssp HHHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCCCC----------TTGGGCTTCCEEECCSSC-------CCCCGG--
T ss_pred HHHHHHhcCCCcccccchhhcCcCcEEECcCCCcccc----------hHHhhCCCCCEEECCCCc-------cCCChh--
Confidence 3556778888888887444567888999998877543 467889999999999997 455554
Q ss_pred hhhhHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCCCcccCcCcCCCCCCCEEeccCcccccCCccc
Q 047161 484 ATESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMPESLGQMESLEELDVSGTVIRQPVPSI 563 (720)
Q Consensus 484 ~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~L~~n~l~~~~~~~ 563 (720)
++.+++|++|++++|. +..+|.... ++|++|++++|.+. .+| .+..+++|++|++++|.+.+.+ .+
T Consensus 81 --------l~~l~~L~~L~L~~N~-l~~l~~~~~--~~L~~L~L~~N~l~-~~~-~l~~l~~L~~L~Ls~N~i~~~~-~l 146 (263)
T 1xeu_A 81 --------LKDLTKLEELSVNRNR-LKNLNGIPS--ACLSRLFLDNNELR-DTD-SLIHLKNLEILSIRNNKLKSIV-ML 146 (263)
T ss_dssp --------GTTCSSCCEEECCSSC-CSCCTTCCC--SSCCEEECCSSCCS-BSG-GGTTCTTCCEEECTTSCCCBCG-GG
T ss_pred --------hccCCCCCEEECCCCc-cCCcCcccc--CcccEEEccCCccC-CCh-hhcCcccccEEECCCCcCCCCh-HH
Confidence 6789999999999998 455776443 99999999999654 455 5899999999999999999875 33
Q ss_pred cCCcCCceEEEeecCCCCCCCCCcccccccccccccCCCCcccccCCCCCCCCCCCcccccEEECCCCCCccccc
Q 047161 564 FFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSLSGLCSLTELNLKKLNLRRNNFVSLRG 638 (720)
Q Consensus 564 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~L~Ls~n~l~~lp~ 638 (720)
. .+++|+.|++++|.+... ..+..+++| +.|++++|.+...|.
T Consensus 147 ~-~l~~L~~L~L~~N~i~~~--------------------------~~l~~l~~L-----~~L~l~~N~~~~~~~ 189 (263)
T 1xeu_A 147 G-FLSKLEVLDLHGNEITNT--------------------------GGLTRLKKV-----NWIDLTGQKCVNEPV 189 (263)
T ss_dssp G-GCTTCCEEECTTSCCCBC--------------------------TTSTTCCCC-----CEEEEEEEEEECCCE
T ss_pred c-cCCCCCEEECCCCcCcch--------------------------HHhccCCCC-----CEEeCCCCcccCCcc
Confidence 3 449999999977765442 234556655 667777777765553
No 121
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.39 E-value=1.2e-12 Score=122.45 Aligned_cols=132 Identities=19% Similarity=0.203 Sum_probs=88.3
Q ss_pred cCCCCcEEeccCCCCC-cccCCCCCCCCCCCEEeccCCCCCcccCcCcCCCCCCCEEeccCcccccCCccccCCcCCceE
Q 047161 494 LLTGLVFLNLNDCKIL-VRLPSTINGWKSLRTVNLSRCSKLENMPESLGQMESLEELDVSGTVIRQPVPSIFFPSRILKV 572 (720)
Q Consensus 494 ~l~~L~~L~Ls~n~~~-~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~~ 572 (720)
..++|+.|++++|.+. +.+|..+..+++|++|++++|.+.+ + ..+..+++|++|++++|.+.+.++..+..+++|+.
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLIS-V-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH 99 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCC-C-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCC-h-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence 3466777777777744 3677777777777777777775433 3 56677777777777777777755555543467777
Q ss_pred EEeecCCCCCCCCCcccccccccccccCCCCcccccCCCCCCCCCCCcccccEEECCCCCCccccc----cccCCCCCce
Q 047161 573 YLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSLSGLCSLTELNLKKLNLRRNNFVSLRG----TINHLPKFKH 648 (720)
Q Consensus 573 L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~L~Ls~n~l~~lp~----~i~~l~~L~~ 648 (720)
|++++|.+..++. +..+..+++| +.|++++|.++.+|. .+..+++|++
T Consensus 100 L~Ls~N~l~~~~~-----------------------~~~l~~l~~L-----~~L~l~~N~l~~~~~~~~~~~~~l~~L~~ 151 (168)
T 2ell_A 100 LNLSGNKLKDIST-----------------------LEPLKKLECL-----KSLDLFNCEVTNLNDYRESVFKLLPQLTY 151 (168)
T ss_dssp EECBSSSCCSSGG-----------------------GGGGSSCSCC-----CEEECCSSGGGTSTTHHHHHHTTCSSCCE
T ss_pred EeccCCccCcchh-----------------------HHHHhcCCCC-----CEEEeeCCcCcchHHHHHHHHHhCccCcE
Confidence 7776654443210 1223445554 778888898888876 6788899999
Q ss_pred eeccccc
Q 047161 649 LKLDDCK 655 (720)
Q Consensus 649 L~L~~c~ 655 (720)
|++++|.
T Consensus 152 L~l~~n~ 158 (168)
T 2ell_A 152 LDGYDRE 158 (168)
T ss_dssp ETTEETT
T ss_pred ecCCCCC
Confidence 9998885
No 122
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.35 E-value=5e-12 Score=120.98 Aligned_cols=90 Identities=17% Similarity=0.149 Sum_probs=51.0
Q ss_pred hccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCCCcccCcCcCCCCCCCEEeccCcccccCCccccCCcCCce
Q 047161 492 IELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMPESLGQMESLEELDVSGTVIRQPVPSIFFPSRILK 571 (720)
Q Consensus 492 i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~ 571 (720)
++.+++|++|+|++|.+.+..|..++++++|++|+|++|.+.+..|..+..+++|++|++++|.+.+.++..+..+++|+
T Consensus 50 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 129 (192)
T 1w8a_A 50 FGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLT 129 (192)
T ss_dssp GGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCC
T ss_pred cccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCC
Confidence 44555666666666655444455555666666666666554444444455566666666666666655555444445666
Q ss_pred EEEeecCCCC
Q 047161 572 VYLFVDTRDH 581 (720)
Q Consensus 572 ~L~l~~~~~~ 581 (720)
.|++.+|.+.
T Consensus 130 ~L~L~~N~l~ 139 (192)
T 1w8a_A 130 SLNLASNPFN 139 (192)
T ss_dssp EEECTTCCBC
T ss_pred EEEeCCCCcc
Confidence 6666555544
No 123
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.35 E-value=3.4e-14 Score=161.44 Aligned_cols=152 Identities=13% Similarity=0.085 Sum_probs=74.8
Q ss_pred hccCCcceEEEeccccCCc----c---cCccccceEEEecCCCCCCCCC-----CC-CCCcceEeeCCCCchhHHhhhcc
Q 047161 379 LKMTNLRLLKIHNLQLPAG----L---ESLSDELRLLQWHGYPLKSLPS-----SM-EMDKTLECNMCYRRIEQFWKGIK 445 (720)
Q Consensus 379 ~~l~~L~~L~l~~~~l~~~----~---~~l~~~l~~L~~~~~~~~~lp~-----~~-~~~~l~~L~l~~~~i~~l~~~~~ 445 (720)
..+++|+.|++++|.+... + ......++.|+++++.+..+.. .+ ...+++.|++.++.+..+..
T Consensus 161 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~--- 237 (592)
T 3ogk_B 161 THCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVG--- 237 (592)
T ss_dssp HHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHH---
T ss_pred hhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHH---
Confidence 4677888888888765322 1 1122457788888777653321 11 24567777777766554321
Q ss_pred CccccCCCCCCCCceeeecCCCCCCCCCCCCcccCccchhhhHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEE
Q 047161 446 NLIRTPDFTGAPNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTV 525 (720)
Q Consensus 446 ~l~~~~~~~~l~~L~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L 525 (720)
.+..+++|+.|+++++.... .....+.. +..+++|+.|+++++. ...+|..+..+++|++|
T Consensus 238 ------~~~~~~~L~~L~l~~~~~~~---~~~~~~~~---------l~~~~~L~~L~l~~~~-~~~l~~~~~~~~~L~~L 298 (592)
T 3ogk_B 238 ------FFKAAANLEEFCGGSLNEDI---GMPEKYMN---------LVFPRKLCRLGLSYMG-PNEMPILFPFAAQIRKL 298 (592)
T ss_dssp ------HHHHCTTCCEEEECBCCCCT---TCTTSSSC---------CCCCTTCCEEEETTCC-TTTGGGGGGGGGGCCEE
T ss_pred ------HHhhhhHHHhhccccccccc---chHHHHHH---------hhccccccccCccccc-hhHHHHHHhhcCCCcEE
Confidence 14455667777776432110 00011111 3444455555554432 34444444455555555
Q ss_pred eccCCCCCccc-CcCcCCCCCCCEEecc
Q 047161 526 NLSRCSKLENM-PESLGQMESLEELDVS 552 (720)
Q Consensus 526 ~L~~~~~l~~l-p~~~~~L~~L~~L~L~ 552 (720)
++++|...... +..+..+++|++|+++
T Consensus 299 ~Ls~~~l~~~~~~~~~~~~~~L~~L~L~ 326 (592)
T 3ogk_B 299 DLLYALLETEDHCTLIQKCPNLEVLETR 326 (592)
T ss_dssp EETTCCCCHHHHHHHHTTCTTCCEEEEE
T ss_pred ecCCCcCCHHHHHHHHHhCcCCCEEecc
Confidence 55555422211 1223445555555554
No 124
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.35 E-value=9.5e-12 Score=119.07 Aligned_cols=109 Identities=21% Similarity=0.225 Sum_probs=88.5
Q ss_pred CCceeeecCCCCCCCCCCCCcccCccchhhhHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCCCccc
Q 047161 457 PNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENM 536 (720)
Q Consensus 457 ~~L~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~l~~l 536 (720)
++|++|+|++|. +..+|.. +..+++|++|+|++|.+.+..|..|.++++|++|+|++|.+.+..
T Consensus 31 ~~l~~L~L~~n~-------i~~ip~~---------~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~ 94 (193)
T 2wfh_A 31 RDVTELYLDGNQ-------FTLVPKE---------LSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIP 94 (193)
T ss_dssp TTCCEEECCSSC-------CCSCCGG---------GGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCC
T ss_pred CCCCEEECCCCc-------CchhHHH---------hhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeC
Confidence 478888888887 5677755 788899999999999866666677888999999999998766666
Q ss_pred CcCcCCCCCCCEEeccCcccccCCccccCCcCCceEEEeecCCCC
Q 047161 537 PESLGQMESLEELDVSGTVIRQPVPSIFFPSRILKVYLFVDTRDH 581 (720)
Q Consensus 537 p~~~~~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~ 581 (720)
|..|..+++|++|+|++|.+..+++..+..+++|+.|++.+|...
T Consensus 95 ~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 95 PRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp TTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred HHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 667888999999999999999888877766688999988776543
No 125
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.32 E-value=3.9e-12 Score=118.90 Aligned_cols=141 Identities=16% Similarity=0.194 Sum_probs=107.2
Q ss_pred CCCCceeeecCCCCCCCCCCCCc--ccCccchhhhHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCC
Q 047161 455 GAPNLEELILDGCKRLQNCTSLT--TLPREIATESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSK 532 (720)
Q Consensus 455 ~l~~L~~L~L~~~~~l~~~~~L~--~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~ 532 (720)
..++|++|++++|. +. .+|.. +..+++|++|++++|.+. .+ ..++.+++|++|++++|.+
T Consensus 22 ~~~~L~~L~l~~n~-------l~~~~i~~~---------~~~l~~L~~L~l~~n~l~-~~-~~~~~l~~L~~L~Ls~N~l 83 (168)
T 2ell_A 22 TPAAVRELVLDNCK-------SNDGKIEGL---------TAEFVNLEFLSLINVGLI-SV-SNLPKLPKLKKLELSENRI 83 (168)
T ss_dssp CTTSCSEEECCSCB-------CBTTBCSSC---------CGGGGGCCEEEEESSCCC-CC-SSCCCCSSCCEEEEESCCC
T ss_pred CcccCCEEECCCCC-------CChhhHHHH---------HHhCCCCCEEeCcCCCCC-Ch-hhhccCCCCCEEECcCCcC
Confidence 44789999999987 45 67765 788999999999999854 44 7888999999999999987
Q ss_pred CcccCcCcCCCCCCCEEeccCcccccCCc-cccCCcCCceEEEeecCCCCCCCCCcccccccccccccCCCCcccccCCC
Q 047161 533 LENMPESLGQMESLEELDVSGTVIRQPVP-SIFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPS 611 (720)
Q Consensus 533 l~~lp~~~~~L~~L~~L~L~~n~l~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~ 611 (720)
.+.+|..+.++++|++|++++|.+.+.+. ..+..+++|+.|++++|.+...++.. ...
T Consensus 84 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~---------------------~~~ 142 (168)
T 2ell_A 84 FGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYR---------------------ESV 142 (168)
T ss_dssp CSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHH---------------------HHH
T ss_pred chHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHH---------------------HHH
Confidence 77688878889999999999999998763 44444589999999777655432200 002
Q ss_pred CCCCCCCCcccccEEECCCCCCcccccc
Q 047161 612 LSGLCSLTELNLKKLNLRRNNFVSLRGT 639 (720)
Q Consensus 612 l~~l~~L~~L~L~~L~Ls~n~l~~lp~~ 639 (720)
+..+++| +.|++++|.+.++|.+
T Consensus 143 ~~~l~~L-----~~L~l~~n~~~~~~~~ 165 (168)
T 2ell_A 143 FKLLPQL-----TYLDGYDREDQEAPDS 165 (168)
T ss_dssp HTTCSSC-----CEETTEETTSCBCCSS
T ss_pred HHhCccC-----cEecCCCCChhhcccc
Confidence 4455655 6778888888887754
No 126
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.31 E-value=1.8e-13 Score=153.24 Aligned_cols=106 Identities=21% Similarity=0.225 Sum_probs=66.1
Q ss_pred CCCEEeccCCCCCcccCcCcCCCCCCCEEeccCcccccCCccccCCcCCceEEEeecCCCCCCCCCcccccccccccccC
Q 047161 521 SLRTVNLSRCSKLENMPESLGQMESLEELDVSGTVIRQPVPSIFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKG 600 (720)
Q Consensus 521 ~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~l~l~ 600 (720)
.|++|+|++|.+ ..+|. ++.+++|+.|+|++|.+..+|..+..+ ++|+.|++++|.+.+
T Consensus 442 ~L~~L~Ls~n~l-~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l-~~L~~L~Ls~N~l~~------------------ 500 (567)
T 1dce_A 442 DVRVLHLAHKDL-TVLCH-LEQLLLVTHLDLSHNRLRALPPALAAL-RCLEVLQASDNALEN------------------ 500 (567)
T ss_dssp TCSEEECTTSCC-SSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGC-TTCCEEECCSSCCCC------------------
T ss_pred CceEEEecCCCC-CCCcC-ccccccCcEeecCcccccccchhhhcC-CCCCEEECCCCCCCC------------------
Confidence 356666666533 33554 666666666666666666554433333 566666665444332
Q ss_pred CCCcccccCCCCCCCCCCCcccccEEECCCCCCccc--cccccCCCCCceeeccccccccccC
Q 047161 601 SSDSMALMLPSLSGLCSLTELNLKKLNLRRNNFVSL--RGTINHLPKFKHLKLDDCKRLRSLS 661 (720)
Q Consensus 601 ~~~~~~~~~~~l~~l~~L~~L~L~~L~Ls~n~l~~l--p~~i~~l~~L~~L~L~~c~~L~~lp 661 (720)
+|.++++++| +.|+|++|.++.+ |..+..+++|+.|+|++|+ +..+|
T Consensus 501 --------lp~l~~l~~L-----~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~-l~~~~ 549 (567)
T 1dce_A 501 --------VDGVANLPRL-----QELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNS-LCQEE 549 (567)
T ss_dssp --------CGGGTTCSSC-----CEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSG-GGGSS
T ss_pred --------CcccCCCCCC-----cEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCc-CCCCc
Confidence 2245566665 6788888888877 7888888888888888885 44444
No 127
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.29 E-value=4.7e-12 Score=115.76 Aligned_cols=129 Identities=16% Similarity=0.189 Sum_probs=83.7
Q ss_pred CCCCcEEeccCCCCC-cccCCCCCCCCCCCEEeccCCCCCcccCcCcCCCCCCCEEeccCcccccCCccccCCcCCceEE
Q 047161 495 LTGLVFLNLNDCKIL-VRLPSTINGWKSLRTVNLSRCSKLENMPESLGQMESLEELDVSGTVIRQPVPSIFFPSRILKVY 573 (720)
Q Consensus 495 l~~L~~L~Ls~n~~~-~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L 573 (720)
.++|+.|++++|.+. +.+|..++.+++|++|++++|.+.+ + ..++.+++|++|++++|.+.+.++..+..+++|+.|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTS-I-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCC-C-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCC-c-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 456777777777754 4677777777777777777775443 3 567777777777777777777555544433667777
Q ss_pred EeecCCCCCCCCCcccccccccccccCCCCcccccCCCCCCCCCCCcccccEEECCCCCCccccc----cccCCCCCcee
Q 047161 574 LFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSLSGLCSLTELNLKKLNLRRNNFVSLRG----TINHLPKFKHL 649 (720)
Q Consensus 574 ~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~L~Ls~n~l~~lp~----~i~~l~~L~~L 649 (720)
++++|.+..++ .+..+..+++| +.|++++|.++.+|. .+..+++|+.|
T Consensus 94 ~ls~N~i~~~~-----------------------~~~~~~~l~~L-----~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L 145 (149)
T 2je0_A 94 NLSGNKIKDLS-----------------------TIEPLKKLENL-----KSLDLFNCEVTNLNDYRENVFKLLPQLTYL 145 (149)
T ss_dssp ECTTSCCCSHH-----------------------HHGGGGGCTTC-----CEEECTTCGGGGSTTHHHHHHHHCTTCCEE
T ss_pred ECCCCcCCChH-----------------------HHHHHhhCCCC-----CEEeCcCCcccchHHHHHHHHHHCCCcccc
Confidence 66555433211 00123445544 677888888887775 56778888888
Q ss_pred eccc
Q 047161 650 KLDD 653 (720)
Q Consensus 650 ~L~~ 653 (720)
++++
T Consensus 146 ~l~d 149 (149)
T 2je0_A 146 DGYD 149 (149)
T ss_dssp TTBC
T ss_pred cCCC
Confidence 8763
No 128
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.27 E-value=1.9e-11 Score=116.94 Aligned_cols=127 Identities=24% Similarity=0.286 Sum_probs=100.7
Q ss_pred eeeecCCCCCCCCCCCCcccCccchhhhHHHHhccCCCCcEEeccCCCCCcccCC--CCCCCCCCCEEeccCCCCCcccC
Q 047161 460 EELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILVRLPS--TINGWKSLRTVNLSRCSKLENMP 537 (720)
Q Consensus 460 ~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~--~i~~l~~L~~L~L~~~~~l~~lp 537 (720)
++++++++. ++.+|.. +. .+|++|++++|.+ ..+|. .++++++|++|+|++|.+.+..|
T Consensus 11 ~~l~~s~~~-------l~~ip~~---------~~--~~l~~L~l~~n~i-~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 71 (192)
T 1w8a_A 11 TTVDCTGRG-------LKEIPRD---------IP--LHTTELLLNDNEL-GRISSDGLFGRLPHLVKLELKRNQLTGIEP 71 (192)
T ss_dssp TEEECTTSC-------CSSCCSC---------CC--TTCSEEECCSCCC-CSBCCSCSGGGCTTCCEEECCSSCCCCBCT
T ss_pred CEEEcCCCC-------cCcCccC---------CC--CCCCEEECCCCcC-CccCCccccccCCCCCEEECCCCCCCCcCH
Confidence 688898876 6788876 32 3899999999985 44554 38899999999999998887778
Q ss_pred cCcCCCCCCCEEeccCcccccCCccccCCcCCceEEEeecCCCCCCCCCcccccccccccccCCCCcccccCCCCCCCCC
Q 047161 538 ESLGQMESLEELDVSGTVIRQPVPSIFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSLSGLCS 617 (720)
Q Consensus 538 ~~~~~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~l~~l~~ 617 (720)
..|..+++|++|+|++|.+.+.++..+..+++|+.|++++|.+.+..+. .+..+++
T Consensus 72 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~------------------------~~~~l~~ 127 (192)
T 1w8a_A 72 NAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPG------------------------SFEHLNS 127 (192)
T ss_dssp TTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTT------------------------SSTTCTT
T ss_pred hHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHH------------------------HhhcCCC
Confidence 8999999999999999999999988776679999999987766554333 2445555
Q ss_pred CCcccccEEECCCCCCc
Q 047161 618 LTELNLKKLNLRRNNFV 634 (720)
Q Consensus 618 L~~L~L~~L~Ls~n~l~ 634 (720)
| +.|+|++|.+.
T Consensus 128 L-----~~L~L~~N~l~ 139 (192)
T 1w8a_A 128 L-----TSLNLASNPFN 139 (192)
T ss_dssp C-----CEEECTTCCBC
T ss_pred C-----CEEEeCCCCcc
Confidence 5 67778888776
No 129
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.27 E-value=5.1e-11 Score=112.28 Aligned_cols=110 Identities=18% Similarity=0.186 Sum_probs=71.1
Q ss_pred CCceeeecCCCCCCCCCCCCcccCccchhhhHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCCCccc
Q 047161 457 PNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENM 536 (720)
Q Consensus 457 ~~L~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~l~~l 536 (720)
++|+.|++++|. +..++... ++.+++|++|++++|.+.+..+..++++++|++|++++|.+.+..
T Consensus 28 ~~l~~L~l~~n~-------l~~~~~~~--------~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 92 (177)
T 2o6r_A 28 SSATRLELESNK-------LQSLPHGV--------FDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLP 92 (177)
T ss_dssp TTCSEEECCSSC-------CCCCCTTT--------TTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred CCCcEEEeCCCc-------ccEeCHHH--------hcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccC
Confidence 467777777765 34555432 566777777777777644333344567777777777777555444
Q ss_pred CcCcCCCCCCCEEeccCcccccCCccccCCcCCceEEEeecCCCC
Q 047161 537 PESLGQMESLEELDVSGTVIRQPVPSIFFPSRILKVYLFVDTRDH 581 (720)
Q Consensus 537 p~~~~~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~ 581 (720)
|..+..+++|++|++++|.+.++++..+..+++|+.|++.+|.+.
T Consensus 93 ~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 93 NGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred HHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCee
Confidence 444667777777777777777777666555577777777666544
No 130
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.27 E-value=2.5e-11 Score=116.12 Aligned_cols=107 Identities=19% Similarity=0.193 Sum_probs=88.9
Q ss_pred eeeecCCCCCCCCCCCCcccCccchhhhHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCCCcccCcC
Q 047161 460 EELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMPES 539 (720)
Q Consensus 460 ~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~ 539 (720)
++++++++. ++.+|.. + .++|++|++++|. +..+|..+.++++|++|+|++|.+.+..|..
T Consensus 13 ~~l~~~~~~-------l~~ip~~---------~--~~~l~~L~L~~n~-i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~ 73 (193)
T 2wfh_A 13 TVVRCSNKG-------LKVLPKG---------I--PRDVTELYLDGNQ-FTLVPKELSNYKHLTLIDLSNNRISTLSNQS 73 (193)
T ss_dssp TEEECTTSC-------CSSCCSC---------C--CTTCCEEECCSSC-CCSCCGGGGGCTTCCEEECCSSCCCCCCTTT
T ss_pred CEEEcCCCC-------CCcCCCC---------C--CCCCCEEECCCCc-CchhHHHhhcccCCCEEECCCCcCCEeCHhH
Confidence 578888876 6778876 2 3589999999998 5688899999999999999999877666677
Q ss_pred cCCCCCCCEEeccCcccccCCccccCCcCCceEEEeecCCCCCCCC
Q 047161 540 LGQMESLEELDVSGTVIRQPVPSIFFPSRILKVYLFVDTRDHRTSS 585 (720)
Q Consensus 540 ~~~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 585 (720)
|..+++|++|+|++|.+.++++..+..+++|+.|++++|.+..+++
T Consensus 74 f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~ 119 (193)
T 2wfh_A 74 FSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPE 119 (193)
T ss_dssp TTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCT
T ss_pred ccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeCh
Confidence 9999999999999999999998877777999999998777665443
No 131
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.27 E-value=8.1e-12 Score=117.73 Aligned_cols=133 Identities=20% Similarity=0.252 Sum_probs=86.6
Q ss_pred CCCCCCCCceeeecCCCCCCCCCCCCcccCccchhhhHHHHhccC-CCCcEEeccCCCCCcccCCCCCCCCCCCEEeccC
Q 047161 451 PDFTGAPNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELL-TGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSR 529 (720)
Q Consensus 451 ~~~~~l~~L~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l-~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~ 529 (720)
+.+..+++|+.|++++|. +..+|. +..+ ++|++|++++|.+. .+ ..++.+++|++|++++
T Consensus 13 ~~~~~~~~L~~L~l~~n~-------l~~i~~----------~~~~~~~L~~L~Ls~N~l~-~~-~~l~~l~~L~~L~Ls~ 73 (176)
T 1a9n_A 13 AQYTNAVRDRELDLRGYK-------IPVIEN----------LGATLDQFDAIDFSDNEIR-KL-DGFPLLRRLKTLLVNN 73 (176)
T ss_dssp CEEECTTSCEEEECTTSC-------CCSCCC----------GGGGTTCCSEEECCSSCCC-EE-CCCCCCSSCCEEECCS
T ss_pred HhcCCcCCceEEEeeCCC-------CchhHH----------hhhcCCCCCEEECCCCCCC-cc-cccccCCCCCEEECCC
Confidence 446667788888888876 344543 3333 37888888887743 34 5677777777777777
Q ss_pred CCCCcccCcC-cCCCCCCCEEeccCcccccCCccccCCcCCceEEEeecCCCCCCCCCcccccccccccccCCCCccccc
Q 047161 530 CSKLENMPES-LGQMESLEELDVSGTVIRQPVPSIFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALM 608 (720)
Q Consensus 530 ~~~l~~lp~~-~~~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~ 608 (720)
|.+. .+|.. ++.+++|++|++++|.+...++-
T Consensus 74 N~l~-~~~~~~~~~l~~L~~L~L~~N~i~~~~~~---------------------------------------------- 106 (176)
T 1a9n_A 74 NRIC-RIGEGLDQALPDLTELILTNNSLVELGDL---------------------------------------------- 106 (176)
T ss_dssp SCCC-EECSCHHHHCTTCCEEECCSCCCCCGGGG----------------------------------------------
T ss_pred Cccc-ccCcchhhcCCCCCEEECCCCcCCcchhh----------------------------------------------
Confidence 7544 44543 36777777777777776554330
Q ss_pred CCCCCCCCCCCcccccEEECCCCCCcccccc----ccCCCCCceeeccccc
Q 047161 609 LPSLSGLCSLTELNLKKLNLRRNNFVSLRGT----INHLPKFKHLKLDDCK 655 (720)
Q Consensus 609 ~~~l~~l~~L~~L~L~~L~Ls~n~l~~lp~~----i~~l~~L~~L~L~~c~ 655 (720)
..+..+++| +.|++++|.+..+|.. +..+++|+.|++++|+
T Consensus 107 -~~l~~l~~L-----~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 107 -DPLASLKSL-----TYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp -GGGGGCTTC-----CEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred -HhhhcCCCC-----CEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 012223333 6677788888877764 7788888888888875
No 132
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.25 E-value=5.7e-12 Score=115.20 Aligned_cols=112 Identities=16% Similarity=0.196 Sum_probs=78.1
Q ss_pred CCCCceeeecCCCCCCCCCCCCc--ccCccchhhhHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCC
Q 047161 455 GAPNLEELILDGCKRLQNCTSLT--TLPREIATESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSK 532 (720)
Q Consensus 455 ~l~~L~~L~L~~~~~l~~~~~L~--~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~ 532 (720)
..++|+.|++++|. +. .+|.. ++.+++|++|++++|.+.+ + ..++++++|++|++++|.+
T Consensus 15 ~~~~l~~L~l~~n~-------l~~~~~~~~---------~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~Ls~n~i 76 (149)
T 2je0_A 15 TPSDVKELVLDNSR-------SNEGKLEGL---------TDEFEELEFLSTINVGLTS-I-ANLPKLNKLKKLELSDNRV 76 (149)
T ss_dssp CGGGCSEEECTTCB-------CBTTBCCSC---------CTTCTTCCEEECTTSCCCC-C-TTCCCCTTCCEEECCSSCC
T ss_pred CCccCeEEEccCCc-------CChhHHHHH---------HhhcCCCcEEECcCCCCCC-c-hhhhcCCCCCEEECCCCcc
Confidence 34678888888876 34 55654 6777888888888887443 3 6677788888888888776
Q ss_pred CcccCcCcCCCCCCCEEeccCcccccCC-ccccCCcCCceEEEeecCCCCCCC
Q 047161 533 LENMPESLGQMESLEELDVSGTVIRQPV-PSIFFPSRILKVYLFVDTRDHRTS 584 (720)
Q Consensus 533 l~~lp~~~~~L~~L~~L~L~~n~l~~~~-~~~~~~~~~L~~L~l~~~~~~~~~ 584 (720)
.+.+|..++.+++|++|++++|.+.+.+ +..+..+++|+.|++++|.+...+
T Consensus 77 ~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 129 (149)
T 2je0_A 77 SGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLN 129 (149)
T ss_dssp CSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGST
T ss_pred cchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchH
Confidence 6657776777888888888888877754 233444477888888766655443
No 133
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.23 E-value=7.9e-11 Score=110.97 Aligned_cols=132 Identities=16% Similarity=0.264 Sum_probs=99.2
Q ss_pred eEEEecCCCCCCCCCCCCCCcceEeeCCCCchhHHhhhccCccccCCCCCCCCceeeecCCCCCCCCCCCCcccCccchh
Q 047161 406 RLLQWHGYPLKSLPSSMEMDKTLECNMCYRRIEQFWKGIKNLIRTPDFTGAPNLEELILDGCKRLQNCTSLTTLPREIAT 485 (720)
Q Consensus 406 ~~L~~~~~~~~~lp~~~~~~~l~~L~l~~~~i~~l~~~~~~l~~~~~~~~l~~L~~L~L~~~~~l~~~~~L~~lp~~~~~ 485 (720)
+.++..++.+..+|..+. .++..|+++++++..+.. ..|..+++|++|++++|. +..+|...
T Consensus 10 ~~l~~~~~~l~~~p~~~~-~~l~~L~l~~n~l~~~~~--------~~~~~l~~L~~L~l~~n~-------l~~~~~~~-- 71 (177)
T 2o6r_A 10 TEIRCNSKGLTSVPTGIP-SSATRLELESNKLQSLPH--------GVFDKLTQLTKLSLSQNQ-------IQSLPDGV-- 71 (177)
T ss_dssp TEEECCSSCCSSCCTTCC-TTCSEEECCSSCCCCCCT--------TTTTTCTTCSEEECCSSC-------CCCCCTTT--
T ss_pred CEEEecCCCCccCCCCCC-CCCcEEEeCCCcccEeCH--------HHhcCcccccEEECCCCc-------ceEeChhH--
Confidence 345566666666665443 466677777666543211 136889999999999997 56777653
Q ss_pred hhHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCCCcccCc-CcCCCCCCCEEeccCcccccCCcc
Q 047161 486 ESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMPE-SLGQMESLEELDVSGTVIRQPVPS 562 (720)
Q Consensus 486 ~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~-~~~~L~~L~~L~L~~n~l~~~~~~ 562 (720)
++.+++|++|++++|.+.+..|..++++++|++|++++|.+. .+|. .+..+++|++|++++|.+.+..+.
T Consensus 72 ------~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 142 (177)
T 2o6r_A 72 ------FDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCPR 142 (177)
T ss_dssp ------TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred ------ccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcce-EeCHHHhcCCcccCEEEecCCCeeccCcc
Confidence 688999999999999966555556789999999999999765 4554 468899999999999999886653
No 134
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.21 E-value=1.4e-13 Score=156.52 Aligned_cols=316 Identities=13% Similarity=0.124 Sum_probs=146.5
Q ss_pred hccCCcceEEEeccccCCc----ccCccccceEEEecCC-CCCC--CCCCC-CCCcceEeeCCCCchhHHhhhccCcccc
Q 047161 379 LKMTNLRLLKIHNLQLPAG----LESLSDELRLLQWHGY-PLKS--LPSSM-EMDKTLECNMCYRRIEQFWKGIKNLIRT 450 (720)
Q Consensus 379 ~~l~~L~~L~l~~~~l~~~----~~~l~~~l~~L~~~~~-~~~~--lp~~~-~~~~l~~L~l~~~~i~~l~~~~~~l~~~ 450 (720)
..+++|+.|+++++.+... +......++.|++.++ .++. ++... ...++++|++.++.+..... ..+
T Consensus 102 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~-----~~l 176 (594)
T 2p1m_B 102 SSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSG-----HWL 176 (594)
T ss_dssp HHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCG-----GGG
T ss_pred HhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcch-----HHH
Confidence 3455666666666654321 1101234666666655 2221 22211 23456666666655322100 001
Q ss_pred CC-CCCCCCceeeecCCCC-CC---------CCCCCCcccCc--cchhhhHHHHhccCCCCcEEeccCCCC---------
Q 047161 451 PD-FTGAPNLEELILDGCK-RL---------QNCTSLTTLPR--EIATESLQKLIELLTGLVFLNLNDCKI--------- 508 (720)
Q Consensus 451 ~~-~~~l~~L~~L~L~~~~-~l---------~~~~~L~~lp~--~~~~~~l~~~i~~l~~L~~L~Ls~n~~--------- 508 (720)
+. ...+++|++|++++|. .+ .++++|+.+.- ......++..+..+++|+.|+++++..
T Consensus 177 ~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 256 (594)
T 2p1m_B 177 SHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSG 256 (594)
T ss_dssp GGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHH
T ss_pred HHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHH
Confidence 11 2255666666666664 11 11233333221 111222555577777888887554421
Q ss_pred ----------C-----------cccCCCCCCCCCCCEEeccCCCCCcc-cCcCcCCCCCCCEEeccCcccccCCccccCC
Q 047161 509 ----------L-----------VRLPSTINGWKSLRTVNLSRCSKLEN-MPESLGQMESLEELDVSGTVIRQPVPSIFFP 566 (720)
Q Consensus 509 ----------~-----------~~lp~~i~~l~~L~~L~L~~~~~l~~-lp~~~~~L~~L~~L~L~~n~l~~~~~~~~~~ 566 (720)
+ ..+|..+..+++|++|++++|.+... ++..+..+++|++|++++|......+.+...
T Consensus 257 l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~ 336 (594)
T 2p1m_B 257 LSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLAST 336 (594)
T ss_dssp HHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHH
T ss_pred HHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCccCHHHHHHHHHh
Confidence 0 11232233567778888877763322 2223557777888888777211122222233
Q ss_pred cCCceEEEeecC------CCCCCCCCcc----cccccccccccCCCCcccccCCCCC-CCCCCCcc--------------
Q 047161 567 SRILKVYLFVDT------RDHRTSSSSW----HLWFPFSLMQKGSSDSMALMLPSLS-GLCSLTEL-------------- 621 (720)
Q Consensus 567 ~~~L~~L~l~~~------~~~~~~~~~~----~~l~~l~~l~l~~~~~~~~~~~~l~-~l~~L~~L-------------- 621 (720)
+++|+.|++.++ ....+....+ ..+..|+.+.+.+++........+. .+++|+.|
T Consensus 337 ~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~ 416 (594)
T 2p1m_B 337 CKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLT 416 (594)
T ss_dssp CTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTT
T ss_pred CCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCccccc
Confidence 477888877442 1111111111 1233444444433333222111111 12222211
Q ss_pred ----------------cccEEECCCCCCcc-cccccc-CCCCCceeeccccccccc--cCCc---ccccceEeeecCccc
Q 047161 622 ----------------NLKKLNLRRNNFVS-LRGTIN-HLPKFKHLKLDDCKRLRS--LSEL---PSDIKKVRVHGCTSL 678 (720)
Q Consensus 622 ----------------~L~~L~Ls~n~l~~-lp~~i~-~l~~L~~L~L~~c~~L~~--lp~l---p~~L~~L~l~~c~~L 678 (720)
+|+.|++++ .++. .+..+. .+++|+.|+|++|. +.. ++.+ .++|+.|++++|+.-
T Consensus 417 ~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~L~~L~L~~n~~~ 494 (594)
T 2p1m_B 417 LEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAG-DSDLGMHHVLSGCDSLRKLEIRDCPFG 494 (594)
T ss_dssp CCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCC-SSHHHHHHHHHHCTTCCEEEEESCSCC
T ss_pred CCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCC-CcHHHHHHHHhcCCCcCEEECcCCCCc
Confidence 124445544 2321 112232 26677777777775 211 1111 256999999998863
Q ss_pred ccch-hhccCchhHhhhhhhcccch
Q 047161 679 ATIS-DALRSCNSATSRIFCINCPK 702 (720)
Q Consensus 679 ~~lp-~~~~~~~~L~~l~~~~nc~~ 702 (720)
.... ..+..+++|+.|.+. +|+.
T Consensus 495 ~~~~~~~~~~l~~L~~L~l~-~~~~ 518 (594)
T 2p1m_B 495 DKALLANASKLETMRSLWMS-SCSV 518 (594)
T ss_dssp HHHHHHTGGGGGGSSEEEEE-SSCC
T ss_pred HHHHHHHHHhCCCCCEEeee-CCCC
Confidence 2222 345568888886654 6665
No 135
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.21 E-value=4.3e-12 Score=146.55 Aligned_cols=148 Identities=16% Similarity=0.170 Sum_probs=99.2
Q ss_pred hccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCCCcccCcCcCCCCCCCEEeccCcccccCCccccCCcCCce
Q 047161 492 IELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMPESLGQMESLEELDVSGTVIRQPVPSIFFPSRILK 571 (720)
Q Consensus 492 i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~ 571 (720)
+..+++|+.|+|++|. +..+|..++++++|++|+|++|.+. .+|..+++|++|++|+|++|.+..+|..+..+ ++|+
T Consensus 220 ~~~l~~L~~L~Ls~n~-l~~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l-~~L~ 296 (727)
T 4b8c_D 220 KYDDQLWHALDLSNLQ-IFNISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTSLPAELGSC-FQLK 296 (727)
T ss_dssp --CCCCCCEEECTTSC-CSCCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCSSCCSSGGGG-TTCS
T ss_pred hccCCCCcEEECCCCC-CCCCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCCccChhhcCC-CCCC
Confidence 8889999999999998 4589999999999999999999655 89999999999999999999999877666554 9999
Q ss_pred EEEeecCCCCCCCCCcccccccccccccCCCCcccccCCCCCCCCCCCcccccEEECCCCCCcc-ccccccCCC-CCcee
Q 047161 572 VYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSLSGLCSLTELNLKKLNLRRNNFVS-LRGTINHLP-KFKHL 649 (720)
Q Consensus 572 ~L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~L~Ls~n~l~~-lp~~i~~l~-~L~~L 649 (720)
.|++++|.+..++. .|+.+++| +.|+|++|.++. +|..+..+. .+..|
T Consensus 297 ~L~L~~N~l~~lp~-------------------------~~~~l~~L-----~~L~L~~N~l~~~~p~~~~~~~~~~~~l 346 (727)
T 4b8c_D 297 YFYFFDNMVTTLPW-------------------------EFGNLCNL-----QFLGVEGNPLEKQFLKILTEKSVTGLIF 346 (727)
T ss_dssp EEECCSSCCCCCCS-------------------------STTSCTTC-----CCEECTTSCCCSHHHHHHHHHHHHHHHH
T ss_pred EEECCCCCCCccCh-------------------------hhhcCCCc-----cEEeCCCCccCCCChHHHhhcchhhhHH
Confidence 99997776543322 24555554 566777777763 344443221 11234
Q ss_pred eccccccccccCCcccccceEeeecC
Q 047161 650 KLDDCKRLRSLSELPSDIKKVRVHGC 675 (720)
Q Consensus 650 ~L~~c~~L~~lp~lp~~L~~L~l~~c 675 (720)
+|++|..- ..+|..|..|++..+
T Consensus 347 ~l~~N~l~---~~~p~~l~~l~l~~n 369 (727)
T 4b8c_D 347 YLRDNRPE---IPLPHERRFIEINTD 369 (727)
T ss_dssp HHHHCCCC---CCCCCC---------
T ss_pred hhccCccc---CcCccccceeEeecc
Confidence 56655321 234555666666554
No 136
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.20 E-value=1.6e-12 Score=147.69 Aligned_cols=223 Identities=11% Similarity=0.021 Sum_probs=115.6
Q ss_pred CCCCceeeecCCCCCCCCCCCCcccCccchhhhHHHHhccCCCCcEEeccCCCCC----cccCCCCCCCCCCCEEeccCC
Q 047161 455 GAPNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKIL----VRLPSTINGWKSLRTVNLSRC 530 (720)
Q Consensus 455 ~l~~L~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~----~~lp~~i~~l~~L~~L~L~~~ 530 (720)
.+++|++|+|++|. +.... ...++.....+++|++|++++|.+. ..++..+.++++|++|++++|
T Consensus 162 ~~~~L~~L~L~~~~-------~~~~~----~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~ 230 (592)
T 3ogk_B 162 HCRKIKTLLMEESS-------FSEKD----GKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDF 230 (592)
T ss_dssp HCTTCSEEECTTCE-------EECCC----SHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSC
T ss_pred hCCCCCEEECcccc-------ccCcc----hhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCc
Confidence 45667777777664 11111 1113333556777777777777643 234444556677777777776
Q ss_pred CCCcccCcCcCCCCCCCEEeccCcccc---cCCccccCCcCCceEEEeecCCCCCCCCCcccccccccccccCCCCcccc
Q 047161 531 SKLENMPESLGQMESLEELDVSGTVIR---QPVPSIFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMAL 607 (720)
Q Consensus 531 ~~l~~lp~~~~~L~~L~~L~L~~n~l~---~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~ 607 (720)
.. ..+|..+.++++|++|+++.+... .........+++|+.|.+.++.. ...+..+..+.+++.+++..+.....
T Consensus 231 ~~-~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~l~~~~~~~~~L~~L~Ls~~~l~~~ 308 (592)
T 3ogk_B 231 EI-LELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGP-NEMPILFPFAAQIRKLDLLYALLETE 308 (592)
T ss_dssp BG-GGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCT-TTGGGGGGGGGGCCEEEETTCCCCHH
T ss_pred cH-HHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccch-hHHHHHHhhcCCCcEEecCCCcCCHH
Confidence 43 346666667777777777643221 11112222336777777655322 22334455566677777766653333
Q ss_pred cCCC-CCCCCCCCcccccEEECCCCCCc--cccccccCCCCCceeeccc----------ccccccc--CC---cccccce
Q 047161 608 MLPS-LSGLCSLTELNLKKLNLRRNNFV--SLRGTINHLPKFKHLKLDD----------CKRLRSL--SE---LPSDIKK 669 (720)
Q Consensus 608 ~~~~-l~~l~~L~~L~L~~L~Ls~n~l~--~lp~~i~~l~~L~~L~L~~----------c~~L~~l--p~---lp~~L~~ 669 (720)
.+.. +..+++| +.|+++ +.+. .++.....+++|++|++++ |..+... +. -.++|++
T Consensus 309 ~~~~~~~~~~~L-----~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~ 382 (592)
T 3ogk_B 309 DHCTLIQKCPNL-----EVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEY 382 (592)
T ss_dssp HHHHHHTTCTTC-----CEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSE
T ss_pred HHHHHHHhCcCC-----CEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeE
Confidence 3322 4556655 344444 2222 3344445667777777774 5444321 11 1245777
Q ss_pred EeeecCccccc-chhhccC-chhHhhhhhh
Q 047161 670 VRVHGCTSLAT-ISDALRS-CNSATSRIFC 697 (720)
Q Consensus 670 L~l~~c~~L~~-lp~~~~~-~~~L~~l~~~ 697 (720)
|++ .|..+.. .+..+.. +++|+.|.+.
T Consensus 383 L~l-~~~~l~~~~~~~l~~~~~~L~~L~l~ 411 (592)
T 3ogk_B 383 MAV-YVSDITNESLESIGTYLKNLCDFRLV 411 (592)
T ss_dssp EEE-EESCCCHHHHHHHHHHCCSCCEEEEE
T ss_pred EEe-ecCCccHHHHHHHHhhCCCCcEEEEe
Confidence 777 4444432 2223322 5666665553
No 137
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.20 E-value=4.7e-11 Score=124.71 Aligned_cols=101 Identities=13% Similarity=0.060 Sum_probs=58.9
Q ss_pred CCCCCEEeccCcccccCCccccCCcCCceEEEeecCCCCCCCCCccccccccc-ccccCCCCcccccCCCCCCCCCCCcc
Q 047161 543 MESLEELDVSGTVIRQPVPSIFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFS-LMQKGSSDSMALMLPSLSGLCSLTEL 621 (720)
Q Consensus 543 L~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~-~l~l~~~~~~~~~~~~l~~l~~L~~L 621 (720)
+++|+.|++++|.+..+++..+..+.+|+.+.+.+| +..+....|.++..|+ .+.+.. +........|.+|++|
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L--- 299 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNL--- 299 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTE---
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccC---
Confidence 566777777777777777776766677777777554 5555555555555555 555544 3333333345555554
Q ss_pred cccEEECCCCCCcccc-ccccCCCCCceee
Q 047161 622 NLKKLNLRRNNFVSLR-GTINHLPKFKHLK 650 (720)
Q Consensus 622 ~L~~L~Ls~n~l~~lp-~~i~~l~~L~~L~ 650 (720)
+.+++++|+++.++ ..+.++++|+.++
T Consensus 300 --~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 300 --RYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp --EEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred --CEEEeCCCccCccchhhhcCCcchhhhc
Confidence 45555555555554 2455555555554
No 138
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.15 E-value=3.2e-11 Score=113.61 Aligned_cols=85 Identities=19% Similarity=0.253 Sum_probs=38.6
Q ss_pred hccCCCCcEEeccCCCCCcccCCCC-CCCCCCCEEeccCCCCCcccCc--CcCCCCCCCEEeccCcccccCCcc---ccC
Q 047161 492 IELLTGLVFLNLNDCKILVRLPSTI-NGWKSLRTVNLSRCSKLENMPE--SLGQMESLEELDVSGTVIRQPVPS---IFF 565 (720)
Q Consensus 492 i~~l~~L~~L~Ls~n~~~~~lp~~i-~~l~~L~~L~L~~~~~l~~lp~--~~~~L~~L~~L~L~~n~l~~~~~~---~~~ 565 (720)
++.+++|++|++++|.+ ..+|..+ +.+++|++|++++|.+ +.+|. .+..+++|++|++++|.+...+.. .+.
T Consensus 60 l~~l~~L~~L~Ls~N~l-~~~~~~~~~~l~~L~~L~L~~N~i-~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~ 137 (176)
T 1a9n_A 60 FPLLRRLKTLLVNNNRI-CRIGEGLDQALPDLTELILTNNSL-VELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIY 137 (176)
T ss_dssp CCCCSSCCEEECCSSCC-CEECSCHHHHCTTCCEEECCSCCC-CCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHH
T ss_pred cccCCCCCEEECCCCcc-cccCcchhhcCCCCCEEECCCCcC-CcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHH
Confidence 44455555555555542 2333332 4455555555555432 33443 444555555555555555444432 122
Q ss_pred CcCCceEEEeecC
Q 047161 566 PSRILKVYLFVDT 578 (720)
Q Consensus 566 ~~~~L~~L~l~~~ 578 (720)
.+++|+.|+++.|
T Consensus 138 ~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 138 KVPQVRVLDFQKV 150 (176)
T ss_dssp HCTTCSEETTEEC
T ss_pred HCCccceeCCCcC
Confidence 2245555554444
No 139
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.13 E-value=1.2e-10 Score=130.40 Aligned_cols=104 Identities=16% Similarity=0.108 Sum_probs=81.9
Q ss_pred CCCCCCceeeecCCCCCCCCCCCCcccCccchhhhHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCC
Q 047161 453 FTGAPNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSK 532 (720)
Q Consensus 453 ~~~l~~L~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~ 532 (720)
++.+++|+.|+|++|. +..+|.. ++.+++|++|+|++|.+. .+| .++++++|++|+|++|.+
T Consensus 459 ~~~l~~L~~L~Ls~N~-------l~~lp~~---------~~~l~~L~~L~Ls~N~l~-~lp-~l~~l~~L~~L~Ls~N~l 520 (567)
T 1dce_A 459 LEQLLLVTHLDLSHNR-------LRALPPA---------LAALRCLEVLQASDNALE-NVD-GVANLPRLQELLLCNNRL 520 (567)
T ss_dssp GGGGTTCCEEECCSSC-------CCCCCGG---------GGGCTTCCEEECCSSCCC-CCG-GGTTCSSCCEEECCSSCC
T ss_pred ccccccCcEeecCccc-------ccccchh---------hhcCCCCCEEECCCCCCC-CCc-ccCCCCCCcEEECCCCCC
Confidence 5677888899998887 5677776 888889999999988854 477 788889999999988876
Q ss_pred Cccc-CcCcCCCCCCCEEeccCcccccCCccccC---CcCCceEEE
Q 047161 533 LENM-PESLGQMESLEELDVSGTVIRQPVPSIFF---PSRILKVYL 574 (720)
Q Consensus 533 l~~l-p~~~~~L~~L~~L~L~~n~l~~~~~~~~~---~~~~L~~L~ 574 (720)
.+.. |..++.|++|+.|++++|.+.+.|+.... .+++|+.|+
T Consensus 521 ~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 521 QQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp CSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred CCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence 6554 88888889999999999988888775432 246777764
No 140
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.11 E-value=3.6e-10 Score=105.62 Aligned_cols=107 Identities=15% Similarity=0.140 Sum_probs=85.0
Q ss_pred CceeeecCCCCCCCCCCCCcccCccchhhhHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCCCcccC
Q 047161 458 NLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMP 537 (720)
Q Consensus 458 ~L~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp 537 (720)
..+.+++++|. ++.+|.. + .++|++|+|++|.+.+..|..++++++|++|+|++|.+.+..|
T Consensus 10 ~~~~l~~s~n~-------l~~ip~~---------~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~ 71 (170)
T 3g39_A 10 SGTTVDCSGKS-------LASVPTG---------I--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPA 71 (170)
T ss_dssp ETTEEECTTSC-------CSSCCSC---------C--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCT
T ss_pred CCCEEEeCCCC-------cCccCcc---------C--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccCh
Confidence 35788888876 6778876 3 3788999999998766667888899999999999987655444
Q ss_pred cCcCCCCCCCEEeccCcccccCCccccCCcCCceEEEeecCCCCC
Q 047161 538 ESLGQMESLEELDVSGTVIRQPVPSIFFPSRILKVYLFVDTRDHR 582 (720)
Q Consensus 538 ~~~~~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~ 582 (720)
..|..+++|++|+|++|.+.++++..+..+++|+.|++++|.+..
T Consensus 72 ~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 72 GVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred hhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence 557889999999999999999888777666899999998776543
No 141
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.09 E-value=5.2e-10 Score=104.91 Aligned_cols=104 Identities=15% Similarity=0.180 Sum_probs=79.6
Q ss_pred eeeecCCCCCCCCCCCCcccCccchhhhHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCCCcccCc-
Q 047161 460 EELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMPE- 538 (720)
Q Consensus 460 ~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~- 538 (720)
+.+++++|. +..+|.. + .++|++|+|++|.+.+..|..++++++|++|+|++|.+.+ +|.
T Consensus 15 ~~l~~~~n~-------l~~iP~~---------~--~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-i~~~ 75 (174)
T 2r9u_A 15 TLVNCQNIR-------LASVPAG---------I--PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTA-IPTG 75 (174)
T ss_dssp SEEECCSSC-------CSSCCSC---------C--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTT
T ss_pred cEEEeCCCC-------CCccCCC---------c--CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCc-cChh
Confidence 677888776 5777776 3 2788888888888666667788888888888888886544 554
Q ss_pred CcCCCCCCCEEeccCcccccCCccccCCcCCceEEEeecCCCCC
Q 047161 539 SLGQMESLEELDVSGTVIRQPVPSIFFPSRILKVYLFVDTRDHR 582 (720)
Q Consensus 539 ~~~~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~ 582 (720)
.|.++++|++|+|++|.+.++++..+..+++|+.|++.+|.+..
T Consensus 76 ~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 76 VFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred HhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCccc
Confidence 46788888888888888888888766666888888887776543
No 142
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.08 E-value=6.8e-12 Score=142.44 Aligned_cols=231 Identities=19% Similarity=0.199 Sum_probs=121.9
Q ss_pred CCCCceeeecCCCCCCCCCCCCcccCccchhhhHHHHhc-cCCCCcEEeccCCCCCcc--cCCCCCCCCCCCEEeccCCC
Q 047161 455 GAPNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIE-LLTGLVFLNLNDCKILVR--LPSTINGWKSLRTVNLSRCS 531 (720)
Q Consensus 455 ~l~~L~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~-~l~~L~~L~Ls~n~~~~~--lp~~i~~l~~L~~L~L~~~~ 531 (720)
.+++|++|+|++|. +... .+..+. .+++|++|+|++|...+. ++..+.++++|++|++++|.
T Consensus 103 ~~~~L~~L~L~~~~-------~~~~--------~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~ 167 (594)
T 2p1m_B 103 SYTWLEEIRLKRMV-------VTDD--------CLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESD 167 (594)
T ss_dssp HCTTCCEEEEESCB-------CCHH--------HHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCE
T ss_pred hCCCCCeEEeeCcE-------EcHH--------HHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCc
Confidence 56777777777764 1111 111132 577888888888743333 44444567888888888876
Q ss_pred CCcc----cCcCcCCCCCCCEEeccCcccccCC----ccccCCcCCceEEEeecCCCCCCCCCcccccccccccccCCCC
Q 047161 532 KLEN----MPESLGQMESLEELDVSGTVIRQPV----PSIFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSD 603 (720)
Q Consensus 532 ~l~~----lp~~~~~L~~L~~L~L~~n~l~~~~----~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~ 603 (720)
+.+. ++.....+++|++|++++|. .... ..+...+++|+.|++.+|......+..+..+..++.+.+....
T Consensus 168 i~~~~~~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~ 246 (594)
T 2p1m_B 168 VDDVSGHWLSHFPDTYTSLVSLNISCLA-SEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYT 246 (594)
T ss_dssp EECCCGGGGGGSCTTCCCCCEEECTTCC-SCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCC
T ss_pred cCCcchHHHHHHhhcCCcCcEEEecccC-CcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEccccccc
Confidence 3322 33333466788888888775 1111 1122224778888887662211122233334444444432221
Q ss_pred c------ccccCCCCCCCCCCCcc-------------------cccEEECCCCCCcc--ccccccCCCCCceeecccccc
Q 047161 604 S------MALMLPSLSGLCSLTEL-------------------NLKKLNLRRNNFVS--LRGTINHLPKFKHLKLDDCKR 656 (720)
Q Consensus 604 ~------~~~~~~~l~~l~~L~~L-------------------~L~~L~Ls~n~l~~--lp~~i~~l~~L~~L~L~~c~~ 656 (720)
. .....+.+.++++|+.| +|+.|+|++|.+.. ++..+.++++|++|++++|-.
T Consensus 247 ~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~ 326 (594)
T 2p1m_B 247 AEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIE 326 (594)
T ss_dssp CCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGGGH
T ss_pred CccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCccC
Confidence 0 00000012222222222 45788888888652 334457888999999988832
Q ss_pred ccccCCc---ccccceEeeec--------Ccccccch--hhccCchhHhhhhhhcccchh
Q 047161 657 LRSLSEL---PSDIKKVRVHG--------CTSLATIS--DALRSCNSATSRIFCINCPKL 703 (720)
Q Consensus 657 L~~lp~l---p~~L~~L~l~~--------c~~L~~lp--~~~~~~~~L~~l~~~~nc~~l 703 (720)
-..++.+ .++|+.|++.+ |..+.... ....+|++|+.|.. +|..+
T Consensus 327 ~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~--~~~~l 384 (594)
T 2p1m_B 327 DAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLY--FCRQM 384 (594)
T ss_dssp HHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEE--EESCC
T ss_pred HHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHH--hcCCc
Confidence 1222221 25689998854 34443321 22234777777633 45544
No 143
>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A
Probab=99.08 E-value=1.6e-12 Score=117.05 Aligned_cols=52 Identities=17% Similarity=0.440 Sum_probs=35.9
Q ss_pred CceEeecCCCCCCCCcccHHHHHHHHhccceeEEeccCcccchhhhhhhccc
Q 047161 1 GVKIFEDHKELERGKAVSPGLFKAIEESRFSVVVFSRNYAYSTWCLDELAKI 52 (720)
Q Consensus 1 gi~~f~d~~~l~~g~~~~~~l~~ai~~s~~~ivv~S~~ya~s~wcl~el~~i 52 (720)
|+++|+|+.++.+|+.|.++|.+||++|+..|||+|++|+.|.||..|+..+
T Consensus 38 g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~I~VlS~~y~~S~wc~~El~~a 89 (146)
T 3ub2_A 38 SLRCFLQLRDATPGGAIVSELCQALSSSHCRVLLITPGFLQDPWCKYQMLQA 89 (146)
T ss_dssp ---------------CCCEEECCTTCCEEEEEEEECHHHHHCHHHHHHHHHH
T ss_pred CeEEEEECccccccccHHHHHHHHHHhCCEEEEEECcccccCHHHHHHHHHH
Confidence 7899999999999999999999999999999999999999999999998776
No 144
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.96 E-value=3.2e-09 Score=99.49 Aligned_cols=109 Identities=15% Similarity=0.164 Sum_probs=88.6
Q ss_pred CcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCCCcccCcCcCCCCCCCEEeccCcccccCCccccCCcCCceEEEeec
Q 047161 498 LVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMPESLGQMESLEELDVSGTVIRQPVPSIFFPSRILKVYLFVD 577 (720)
Q Consensus 498 L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~ 577 (720)
-+.+++++|. ++.+|..+. ++|++|+|++|.+.+..|..|+++++|++|+|++|.+.++++..+..+++|+.|++++
T Consensus 14 ~~~l~~~~n~-l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 14 QTLVNCQNIR-LASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SSEEECCSSC-CSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEEeCCCC-CCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 4789999988 688998875 8999999999987777788899999999999999999999998876669999999987
Q ss_pred CCCCCCCCCcccccccccccccCCCCcccccCCCCCCCCCCCcccccEEECCCCCCccccc
Q 047161 578 TRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSLSGLCSLTELNLKKLNLRRNNFVSLRG 638 (720)
Q Consensus 578 ~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~L~Ls~n~l~~lp~ 638 (720)
|.+..+++. .+..+++| +.|+|++|.+...|.
T Consensus 91 N~l~~l~~~------------------------~~~~l~~L-----~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 91 NHLKSIPRG------------------------AFDNLKSL-----THIYLYNNPWDCECR 122 (174)
T ss_dssp SCCCCCCTT------------------------TTTTCTTC-----SEEECCSSCBCTTBG
T ss_pred CccceeCHH------------------------HhccccCC-----CEEEeCCCCcccccc
Confidence 766554332 24555555 678888998876654
No 145
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.95 E-value=4.3e-12 Score=122.14 Aligned_cols=95 Identities=17% Similarity=0.222 Sum_probs=50.0
Q ss_pred CCCCCCceeeecCCCCCCCCCCCCcccCccchhhhHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCC
Q 047161 453 FTGAPNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSK 532 (720)
Q Consensus 453 ~~~l~~L~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~ 532 (720)
+.....++.++++.+.--+..+.++.+|.. ++.+++|++|++++|.+ ..+| .++++++|++|++++|.
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~---------~~~l~~L~~L~ls~n~l-~~l~-~~~~l~~L~~L~l~~n~- 81 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDAT---------LSTLKACKHLALSTNNI-EKIS-SLSGMENLRILSLGRNL- 81 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHH---------HHHTTTCSEEECSEEEE-SCCC-CHHHHTTCCEEEEEEEE-
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHH---------HhcCCCCCEEECCCCCC-cccc-ccccCCCCCEEECCCCC-
Confidence 444555555555555433333333333332 55566666666666553 3355 55556666666666653
Q ss_pred CcccCcCcCCCCCCCEEeccCcccccC
Q 047161 533 LENMPESLGQMESLEELDVSGTVIRQP 559 (720)
Q Consensus 533 l~~lp~~~~~L~~L~~L~L~~n~l~~~ 559 (720)
+..+|..+..+++|++|++++|.+.++
T Consensus 82 l~~l~~~~~~~~~L~~L~L~~N~l~~l 108 (198)
T 1ds9_A 82 IKKIENLDAVADTLEELWISYNQIASL 108 (198)
T ss_dssp ECSCSSHHHHHHHCSEEEEEEEECCCH
T ss_pred cccccchhhcCCcCCEEECcCCcCCcC
Confidence 234555555555566666666655553
No 146
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.95 E-value=3.7e-09 Score=98.63 Aligned_cols=108 Identities=15% Similarity=0.161 Sum_probs=87.2
Q ss_pred CCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCCCcccCcCcCCCCCCCEEeccCcccccCCccccCCcCCceEEEee
Q 047161 497 GLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMPESLGQMESLEELDVSGTVIRQPVPSIFFPSRILKVYLFV 576 (720)
Q Consensus 497 ~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~ 576 (720)
..+.+++++|. +..+|..+. ++|++|+|++|.+.+..|..|..+++|++|+|++|.+.++++..+..+++|+.|+++
T Consensus 10 ~~~~l~~s~n~-l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 10 SGTTVDCSGKS-LASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp ETTEEECTTSC-CSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEeCCCC-cCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 35789999998 677998774 899999999998777768889999999999999999999999887777999999998
Q ss_pred cCCCCCCCCCcccccccccccccCCCCcccccCCCCCCCCCCCcccccEEECCCCCCccc
Q 047161 577 DTRDHRTSSSSWHLWFPFSLMQKGSSDSMALMLPSLSGLCSLTELNLKKLNLRRNNFVSL 636 (720)
Q Consensus 577 ~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~L~Ls~n~l~~l 636 (720)
+|.+..+++.. +..+++| +.|+|++|.+...
T Consensus 87 ~N~l~~~~~~~------------------------~~~l~~L-----~~L~L~~N~~~c~ 117 (170)
T 3g39_A 87 DNQLKSIPRGA------------------------FDNLKSL-----THIWLLNNPWDCA 117 (170)
T ss_dssp SSCCCCCCTTT------------------------TTTCTTC-----CEEECCSSCBCTT
T ss_pred CCccCEeCHHH------------------------hcCCCCC-----CEEEeCCCCCCCC
Confidence 87766543322 4455555 6788888877643
No 147
>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A
Probab=98.94 E-value=1.3e-10 Score=105.28 Aligned_cols=52 Identities=27% Similarity=0.402 Sum_probs=50.5
Q ss_pred CceEeecCCCCCCCCcccHHHHHHHHhccceeEEeccCcccchhhhhhhccc
Q 047161 1 GVKIFEDHKELERGKAVSPGLFKAIEESRFSVVVFSRNYAYSTWCLDELAKI 52 (720)
Q Consensus 1 gi~~f~d~~~l~~g~~~~~~l~~ai~~s~~~ivv~S~~ya~s~wcl~el~~i 52 (720)
|+++|+|+.++.+|+.+.++|.+||++|++.|||+|++|+.|.||+.|+..+
T Consensus 34 g~~~~~~~rd~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~S~wc~~El~~a 85 (149)
T 1fyx_A 34 PFKLXLHKRDFIHGKWIIDNIIDSIEKSHKTVFVLSENFVKSEWXKYELDFS 85 (149)
T ss_dssp CCCEEEHHHHCCSSSCHHHHHHHHHHHEEEEEEEECHHHHHHHTHHHHSCCS
T ss_pred CeEEeeccccCCCchhHHHHHHHHHHHcCEEEEEeCcchhccchHHHHHHHH
Confidence 7999999989999999999999999999999999999999999999999887
No 148
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.94 E-value=4.5e-08 Score=104.54 Aligned_cols=173 Identities=13% Similarity=0.122 Sum_probs=92.1
Q ss_pred CCCCCCceeeecCCCCCCCCCCCCcccCccchhhhHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCC
Q 047161 453 FTGAPNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSK 532 (720)
Q Consensus 453 ~~~l~~L~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~ 532 (720)
|.+|++|+.+++++|. +..++... |. ..+|+.+.+..+ +...-+..|.++++|+.+++..+
T Consensus 176 F~~c~~L~~l~l~~n~-------l~~I~~~a--------F~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-- 236 (401)
T 4fdw_A 176 FYYCYNLKKADLSKTK-------ITKLPAST--------FV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-- 236 (401)
T ss_dssp TTTCTTCCEEECTTSC-------CSEECTTT--------TT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT--
T ss_pred hhCcccCCeeecCCCc-------ceEechhh--------Ee-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC--
Confidence 6666667777766654 45666553 33 456666666643 22223345566666777766653
Q ss_pred CcccC-cCcCCCCCCCEEeccCcccccCCccccCCcCCceEEEeecCCCC-----CCCCCcccccccccccccCCCCccc
Q 047161 533 LENMP-ESLGQMESLEELDVSGTVIRQPVPSIFFPSRILKVYLFVDTRDH-----RTSSSSWHLWFPFSLMQKGSSDSMA 606 (720)
Q Consensus 533 l~~lp-~~~~~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~-----~~~~~~~~~l~~l~~l~l~~~~~~~ 606 (720)
+..++ ..|.+ .+|+.+.+ .+.+..+....+..+++|+.+.+.++... .+....|.++..|+.+.+. ++...
T Consensus 237 l~~I~~~aF~~-~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~ 313 (401)
T 4fdw_A 237 VSTIGQEAFRE-SGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRI 313 (401)
T ss_dssp CCEECTTTTTT-CCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCE
T ss_pred ccCcccccccc-CCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEE
Confidence 33343 23444 56666666 33455565666666666777666555443 3455555555555555554 22333
Q ss_pred ccCCCCCCCCCCCcccccEEECCCCCCcccc-ccccCCCCCceeecccc
Q 047161 607 LMLPSLSGLCSLTELNLKKLNLRRNNFVSLR-GTINHLPKFKHLKLDDC 654 (720)
Q Consensus 607 ~~~~~l~~l~~L~~L~L~~L~Ls~n~l~~lp-~~i~~l~~L~~L~L~~c 654 (720)
.....|.++++| +.+.|..+ ++.++ ..+.++ +|+.+++.++
T Consensus 314 I~~~aF~~c~~L-----~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n 355 (401)
T 4fdw_A 314 LGQGLLGGNRKV-----TQLTIPAN-VTQINFSAFNNT-GIKEVKVEGT 355 (401)
T ss_dssp ECTTTTTTCCSC-----CEEEECTT-CCEECTTSSSSS-CCCEEEECCS
T ss_pred EhhhhhcCCCCc-----cEEEECcc-ccEEcHHhCCCC-CCCEEEEcCC
Confidence 333335555554 34444332 44443 344555 5666666555
No 149
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.91 E-value=4.5e-12 Score=122.03 Aligned_cols=149 Identities=17% Similarity=0.165 Sum_probs=87.0
Q ss_pred hccCCCCcEEeccCCCCCcccCC------CCCCCCCCCEEeccCCCCCcccCcCcCCCCCCCEEeccCcccccCCccccC
Q 047161 492 IELLTGLVFLNLNDCKILVRLPS------TINGWKSLRTVNLSRCSKLENMPESLGQMESLEELDVSGTVIRQPVPSIFF 565 (720)
Q Consensus 492 i~~l~~L~~L~Ls~n~~~~~lp~------~i~~l~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~L~~n~l~~~~~~~~~ 565 (720)
+.....++.++++++.+.+..|. .++++++|++|++++|.+. .+| .+.++++|++|++++|.+..+|....
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~-~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~- 90 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIE-KIS-SLSGMENLRILSLGRNLIKKIENLDA- 90 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEES-CCC-CHHHHTTCCEEEEEEEEECSCSSHHH-
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCc-ccc-ccccCCCCCEEECCCCCcccccchhh-
Confidence 34455555555555555555554 5666666666666666433 355 56666666666666666665544322
Q ss_pred CcCCceEEEeecCCCCCCCCCcccccccccccccCCCCcccccC-CCCCCCCCCCcccccEEECCCCCCcccc-c-----
Q 047161 566 PSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSMALML-PSLSGLCSLTELNLKKLNLRRNNFVSLR-G----- 638 (720)
Q Consensus 566 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~-~~l~~l~~L~~L~L~~L~Ls~n~l~~lp-~----- 638 (720)
.+++|+.|++++|.+..++ .+..+..++.+++..+....... ..+..+++| +.|++++|.+...+ .
T Consensus 91 ~~~~L~~L~L~~N~l~~l~--~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L-----~~L~l~~N~l~~~~~~~~~~~ 163 (198)
T 1ds9_A 91 VADTLEELWISYNQIASLS--GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKL-----EDLLLAGNPLYNDYKENNATS 163 (198)
T ss_dssp HHHHCSEEEEEEEECCCHH--HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTC-----SEEEECSCHHHHHHHTTTTHH
T ss_pred cCCcCCEEECcCCcCCcCC--ccccCCCCCEEECCCCcCCchhHHHHHhcCCCC-----CEEEecCCccccccccccchH
Confidence 2356666666666666543 35556666666666554433221 234555555 66777888776442 2
Q ss_pred -----cccCCCCCceee
Q 047161 639 -----TINHLPKFKHLK 650 (720)
Q Consensus 639 -----~i~~l~~L~~L~ 650 (720)
.+..+++|+.|+
T Consensus 164 ~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 164 EYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp HHHHHHHHHCSSCSEEC
T ss_pred HHHHHHHHhCCCcEEEC
Confidence 267788888887
No 150
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.89 E-value=7.2e-09 Score=108.04 Aligned_cols=94 Identities=10% Similarity=0.142 Sum_probs=54.9
Q ss_pred cccccccccCCCCcccccCCCCCCCCCCCcccccEEECCCCCCcccc-ccccCCCCCc-eeeccccccccccCCcc----
Q 047161 591 WFPFSLMQKGSSDSMALMLPSLSGLCSLTELNLKKLNLRRNNFVSLR-GTINHLPKFK-HLKLDDCKRLRSLSELP---- 664 (720)
Q Consensus 591 l~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~L~Ls~n~l~~lp-~~i~~l~~L~-~L~L~~c~~L~~lp~lp---- 664 (720)
+..++.+++..++........|.++.+| +.++|.+| ++.++ ..+.++++|+ .+++.+ .++.++.-.
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L-----~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c 296 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYL-----LKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAFMGC 296 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTC-----CEEECCTT-CCEECTTTTTTCTTCCEEEEECT--TCCEECTTTTTTC
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCC-----CEEECCcc-cceehHHHhhCChhccEEEEEcc--cceEEchhhhhCC
Confidence 3455555555554444444446666665 55666665 66665 4566777777 777766 455554311
Q ss_pred cccceEeeecCcccccch-hhccCchhHhh
Q 047161 665 SDIKKVRVHGCTSLATIS-DALRSCNSATS 693 (720)
Q Consensus 665 ~~L~~L~l~~c~~L~~lp-~~~~~~~~L~~ 693 (720)
++|+.|++.+ ..++.++ ..|.+|++|+.
T Consensus 297 ~~L~~l~l~~-n~i~~I~~~aF~~~~~L~~ 325 (329)
T 3sb4_A 297 DNLRYVLATG-DKITTLGDELFGNGVPSKL 325 (329)
T ss_dssp TTEEEEEECS-SCCCEECTTTTCTTCCCCE
T ss_pred ccCCEEEeCC-CccCccchhhhcCCcchhh
Confidence 4566766644 3466666 36667777665
No 151
>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A
Probab=98.89 E-value=2.3e-10 Score=106.32 Aligned_cols=52 Identities=27% Similarity=0.410 Sum_probs=50.2
Q ss_pred CceEeecCCCCCCCCcccHHHHHHHHhccceeEEeccCcccchhhhhhhccc
Q 047161 1 GVKIFEDHKELERGKAVSPGLFKAIEESRFSVVVFSRNYAYSTWCLDELAKI 52 (720)
Q Consensus 1 gi~~f~d~~~l~~g~~~~~~l~~ai~~s~~~ivv~S~~ya~s~wcl~el~~i 52 (720)
|+++|+|+.++.+|+.|.++|.+||++|+..|||+|++|+.|.||+.|+..+
T Consensus 64 g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~IvVlS~~yl~S~wc~~El~~a 115 (178)
T 2j67_A 64 SILICLYESYFDPGKSISENIVSFIEKSYKSIFVLSPNFVQNEWCHYEFYFA 115 (178)
T ss_dssp CCCEEEHHHHCCTTSCHHHHHHHHHHTEEEEEEEECHHHHHHTGGGTHHHHT
T ss_pred CeEEEEecccCCCCccHHHHHHHHHHhCCEEEEEecccccccchHHHHHHHH
Confidence 7999999989999999999999999999999999999999999999999776
No 152
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.79 E-value=2.1e-08 Score=105.40 Aligned_cols=89 Identities=12% Similarity=0.091 Sum_probs=52.0
Q ss_pred hccCCCCcEEeccC-CCCCcccCCCCCCCCCCCEEeccCCCCCcccCcCcCCCCCCCEEeccCcccccCCccccCCcCCc
Q 047161 492 IELLTGLVFLNLND-CKILVRLPSTINGWKSLRTVNLSRCSKLENMPESLGQMESLEELDVSGTVIRQPVPSIFFPSRIL 570 (720)
Q Consensus 492 i~~l~~L~~L~Ls~-n~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~L~~n~l~~~~~~~~~~~~~L 570 (720)
+..+++|++|+|++ |.+.+..|..|++|++|++|+|++|.+.+..|..|.+|++|++|+|++|.+.++|+..+..+. |
T Consensus 27 l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L 105 (347)
T 2ifg_A 27 LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-L 105 (347)
T ss_dssp SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-C
T ss_pred CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-c
Confidence 34455666666664 553333334566666666666666655554455566666666666666666666666555433 6
Q ss_pred eEEEeecCCCC
Q 047161 571 KVYLFVDTRDH 581 (720)
Q Consensus 571 ~~L~l~~~~~~ 581 (720)
+.|++.+|.+.
T Consensus 106 ~~l~l~~N~~~ 116 (347)
T 2ifg_A 106 QELVLSGNPLH 116 (347)
T ss_dssp CEEECCSSCCC
T ss_pred eEEEeeCCCcc
Confidence 66666655544
No 153
>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens}
Probab=98.78 E-value=9.6e-10 Score=100.42 Aligned_cols=52 Identities=21% Similarity=0.415 Sum_probs=49.1
Q ss_pred CceEeecCCCCCCCCcccHHHHHHHHhccceeEEeccCcc-cchhhhhhhccc
Q 047161 1 GVKIFEDHKELERGKAVSPGLFKAIEESRFSVVVFSRNYA-YSTWCLDELAKI 52 (720)
Q Consensus 1 gi~~f~d~~~l~~g~~~~~~l~~ai~~s~~~ivv~S~~ya-~s~wcl~el~~i 52 (720)
|+++|+|+.++.+|+.|.++|.+||++|+..|||+|++|+ .|.||..|+..+
T Consensus 41 g~~l~~~~rD~~~G~~i~~~i~~~I~~Sr~~IvVlS~~y~~~S~wc~~El~~a 93 (159)
T 1t3g_A 41 GYKLFIPDRDLIPTGTYIEDVARCVDQSKRLIIVMTPNYVVRRGWSIFELETR 93 (159)
T ss_dssp CCCEECHHHHCCCCTTHHHHHHHHHHTBSEEEEEECHHHHHTTTTHHHHHSHH
T ss_pred CeEEEEEcccccCccchHHHHHHHHHHcCEEEEEEccchhhcChHHHHHHHHH
Confidence 7999999988999999999999999999999999999996 999999999654
No 154
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.77 E-value=2e-07 Score=99.56 Aligned_cols=209 Identities=15% Similarity=0.197 Sum_probs=151.0
Q ss_pred CCCCCCceeeecCCCCCCCCCCCCcccCccchhhhHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCC
Q 047161 453 FTGAPNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSK 532 (720)
Q Consensus 453 ~~~l~~L~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~ 532 (720)
|.++ +|+.+.+..+ ++.++... |..+++|+.+++++|. +..+|.......+|+.+.+..+
T Consensus 154 F~~~-~L~~i~lp~~--------l~~I~~~a--------F~~c~~L~~l~l~~n~-l~~I~~~aF~~~~L~~l~lp~~-- 213 (401)
T 4fdw_A 154 FFNS-TVQEIVFPST--------LEQLKEDI--------FYYCYNLKKADLSKTK-ITKLPASTFVYAGIEEVLLPVT-- 213 (401)
T ss_dssp TTTC-CCCEEECCTT--------CCEECSST--------TTTCTTCCEEECTTSC-CSEECTTTTTTCCCSEEECCTT--
T ss_pred cCCC-CceEEEeCCC--------ccEehHHH--------hhCcccCCeeecCCCc-ceEechhhEeecccCEEEeCCc--
Confidence 5564 6888888752 37777654 7889999999999887 5667766556799999999864
Q ss_pred CcccC-cCcCCCCCCCEEeccCcccccCCccccCCcCCceEEEeecCCCCCCCCCcccccccccccccCCCCcc-----c
Q 047161 533 LENMP-ESLGQMESLEELDVSGTVIRQPVPSIFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSDSM-----A 606 (720)
Q Consensus 533 l~~lp-~~~~~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~-----~ 606 (720)
+..++ ..|.++++|+.+++..+ +..+....+.. .+|+.+.+ .+....+....|.++..|+.+.+..+... .
T Consensus 214 l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~ 290 (401)
T 4fdw_A 214 LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAM 290 (401)
T ss_dssp CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCE
T ss_pred hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccE
Confidence 44454 56889999999999874 67777777777 88999998 45577778889999999998887655433 2
Q ss_pred ccCCCCCCCCCCCcccccEEECCCCCCcccc-ccccCCCCCceeeccccccccccCCcc---cccceEeeecCcccccch
Q 047161 607 LMLPSLSGLCSLTELNLKKLNLRRNNFVSLR-GTINHLPKFKHLKLDDCKRLRSLSELP---SDIKKVRVHGCTSLATIS 682 (720)
Q Consensus 607 ~~~~~l~~l~~L~~L~L~~L~Ls~n~l~~lp-~~i~~l~~L~~L~L~~c~~L~~lp~lp---~~L~~L~l~~c~~L~~lp 682 (720)
.....|.++++| +.+.|. ++++.++ ..+.++++|+.+.|.++ ++.++.-. .+|+.+.+.++. +..++
T Consensus 291 I~~~aF~~c~~L-----~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~--l~~I~~~aF~~~~L~~l~l~~n~-~~~l~ 361 (401)
T 4fdw_A 291 IHPYCLEGCPKL-----ARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN--VTQINFSAFNNTGIKEVKVEGTT-PPQVF 361 (401)
T ss_dssp ECTTTTTTCTTC-----CEECCC-TTCCEECTTTTTTCCSCCEEEECTT--CCEECTTSSSSSCCCEEEECCSS-CCBCC
T ss_pred ECHHHhhCCccC-----CeEEeC-CceEEEhhhhhcCCCCccEEEECcc--ccEEcHHhCCCCCCCEEEEcCCC-Ccccc
Confidence 333458888887 566666 4577776 56788999999999654 55555311 268899888764 34443
Q ss_pred -hhccCch-hHhh
Q 047161 683 -DALRSCN-SATS 693 (720)
Q Consensus 683 -~~~~~~~-~L~~ 693 (720)
..|.+++ ++..
T Consensus 362 ~~~F~~~~~~l~~ 374 (401)
T 4fdw_A 362 EKVWYGFPDDITV 374 (401)
T ss_dssp CSSCCCSCTTCCE
T ss_pred cccccCCCCCccE
Confidence 5566664 4444
No 155
>2js7_A Myeloid differentiation primary response protein MYD88; MYD88_human, TIR domain, TOLL like receptor adaptor domain, innate immune signaling; NMR {Homo sapiens} PDB: 2z5v_A
Probab=98.76 E-value=7.1e-10 Score=101.39 Aligned_cols=52 Identities=25% Similarity=0.208 Sum_probs=49.0
Q ss_pred CceEeecCCCCCCCCcccHHHHHHHH-hccceeEEeccCcccchhhhhhhccc
Q 047161 1 GVKIFEDHKELERGKAVSPGLFKAIE-ESRFSVVVFSRNYAYSTWCLDELAKI 52 (720)
Q Consensus 1 gi~~f~d~~~l~~g~~~~~~l~~ai~-~s~~~ivv~S~~ya~s~wcl~el~~i 52 (720)
|+++|+|+.++.+|+.|.++|.+||+ +|+.+|||+|++|+.|.||..|+..+
T Consensus 44 g~~~~~~~rd~~~G~~i~~~i~~~I~~~Sr~~IvVlS~~y~~S~wc~~El~~a 96 (160)
T 2js7_A 44 RLKLCVSDRDVLPGTCVWSIASELIEKRCRRMVVVVSDDYLQSKECDFQTKFA 96 (160)
T ss_dssp CCCCEESCCSSSSSCSCCCCCGGGHHHHEEEEEEECCHHHHHSHHHHHHHHHH
T ss_pred ceEEEEeCCCCCCCCcHHHHHHHHHHHhCCEEEEEECcchhcCHHHHHHHHHH
Confidence 68999999999999999999999999 69999999999999999999999554
No 156
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.61 E-value=4.7e-07 Score=94.92 Aligned_cols=182 Identities=19% Similarity=0.161 Sum_probs=110.5
Q ss_pred CCccCCCCCccccchhHHHHHHhhhccCCCeEEEEEecCCCccccch-----------------h-------cHHHHHHH
Q 047161 121 PRTLGILDDLVEMNSRLKKLRLLLDAESRDVRMIGICGMGGVELSEK-----------------D-------GLIALQKQ 176 (720)
Q Consensus 121 ~~~~~~~~~~vG~~~~~~~i~~~L~~~~~~~~vi~I~G~gGi~vs~~-----------------~-------~~~~~~~~ 176 (720)
+.+......+|||+.+++++.+.+..+ +++.|+|++|++.|.- . ....+.+.
T Consensus 5 ~~~~~~~~~~~gR~~el~~L~~~l~~~----~~v~i~G~~G~GKT~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (350)
T 2qen_A 5 LRPKTRREDIFDREEESRKLEESLENY----PLTLLLGIRRVGKSSLLRAFLNERPGILIDCRELYAERGHITREELIKE 80 (350)
T ss_dssp CSCCCSGGGSCSCHHHHHHHHHHHHHC----SEEEEECCTTSSHHHHHHHHHHHSSEEEEEHHHHHHTTTCBCHHHHHHH
T ss_pred CCCCCChHhcCChHHHHHHHHHHHhcC----CeEEEECCCcCCHHHHHHHHHHHcCcEEEEeecccccccCCCHHHHHHH
Confidence 344556678999999999999988542 6899999999932211 0 12222333
Q ss_pred HHHhhhh---------------cccc--eeccchhhHHHHHHHHhc-CCeEEEEecCCcHH---------HHHHHhccCC
Q 047161 177 LLSKTLM---------------EIDI--EIRNDFDGIKMIKRELRR-RNVLVVIDDAVHIR---------QLNRLAGKHS 229 (720)
Q Consensus 177 il~~~~~---------------~~~~--~~~~~~~~~~~l~~~l~~-kr~LlVLDdv~~~~---------~~~~l~~~~~ 229 (720)
+...+.. .... ...+..+..+.+.+.... ++++||+||++..+ .+..+.....
T Consensus 81 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~~ 160 (350)
T 2qen_A 81 LQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYAYD 160 (350)
T ss_dssp HHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHHHHH
Confidence 3332110 0000 012233344455554443 49999999997632 2344433222
Q ss_pred CCCCCCeEEEEcCChhhhhhc-----------c-ccceEecCCCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHhCCC
Q 047161 230 WFGSGSRIIIPTRDEHLLRTL-----------R-VDGVYKVEKLDDDEALELFNKRAFDGQPSKDYVELIKRIVKYADGL 297 (720)
Q Consensus 230 ~~~~gsrIivTTR~~~v~~~~-----------~-~~~~~~l~~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~i~~~c~gl 297 (720)
. .++.++|+|++...+...+ + ....+++.+|+.+|+.+++....-......+ .+...+++..|+|+
T Consensus 161 ~-~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~~-~~~~~~i~~~tgG~ 238 (350)
T 2qen_A 161 S-LPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDVP-ENEIEEAVELLDGI 238 (350)
T ss_dssp H-CTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCCCC-HHHHHHHHHHHTTC
T ss_pred h-cCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHhCCC
Confidence 1 2478899999876542211 1 1247899999999999999764322111111 24567899999999
Q ss_pred chHHHHhhhhc
Q 047161 298 PFALETLGSVL 308 (720)
Q Consensus 298 PLai~~~g~~l 308 (720)
|+++..++..+
T Consensus 239 P~~l~~~~~~~ 249 (350)
T 2qen_A 239 PGWLVVFGVEY 249 (350)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988754
No 157
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.61 E-value=8.7e-08 Score=100.55 Aligned_cols=101 Identities=13% Similarity=0.018 Sum_probs=80.5
Q ss_pred EEeccCCCCCcccCCCCCCCCCCCEEeccC-CCCCcccCcCcCCCCCCCEEeccCcccccCCccccCCcCCceEEEeecC
Q 047161 500 FLNLNDCKILVRLPSTINGWKSLRTVNLSR-CSKLENMPESLGQMESLEELDVSGTVIRQPVPSIFFPSRILKVYLFVDT 578 (720)
Q Consensus 500 ~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~-~~~l~~lp~~~~~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~ 578 (720)
.++.++++.+..+|. ++.+++|++|+|++ |.+.+..|..|+.|++|++|+|++|.+.++++..+..+++|+.|++++|
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 457777723677999 99999999999996 7655544577999999999999999999999988777799999999999
Q ss_pred CCCCCCCCcccccccccccccCCC
Q 047161 579 RDHRTSSSSWHLWFPFSLMQKGSS 602 (720)
Q Consensus 579 ~~~~~~~~~~~~l~~l~~l~l~~~ 602 (720)
.+..+++..|..+. |+.+.+..|
T Consensus 91 ~l~~~~~~~~~~~~-L~~l~l~~N 113 (347)
T 2ifg_A 91 ALESLSWKTVQGLS-LQELVLSGN 113 (347)
T ss_dssp CCSCCCSTTTCSCC-CCEEECCSS
T ss_pred ccceeCHHHcccCC-ceEEEeeCC
Confidence 88887766655443 555555444
No 158
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=98.61 E-value=2.5e-07 Score=99.53 Aligned_cols=176 Identities=15% Similarity=0.115 Sum_probs=104.0
Q ss_pred CCCCccccchhHHHHHHhh-hc---c---CCCeEEEEEecCCCccccc-----------------------------hhc
Q 047161 126 ILDDLVEMNSRLKKLRLLL-DA---E---SRDVRMIGICGMGGVELSE-----------------------------KDG 169 (720)
Q Consensus 126 ~~~~~vG~~~~~~~i~~~L-~~---~---~~~~~vi~I~G~gGi~vs~-----------------------------~~~ 169 (720)
.+..++||+.+++++...+ .. + ....-+|+|+|++|++.+. ..+
T Consensus 20 ~p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (412)
T 1w5s_A 20 IPPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPN 99 (412)
T ss_dssp CCSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCS
T ss_pred CCCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCC
Confidence 3477999999999999888 42 1 2334445559999992221 112
Q ss_pred HHHHHHHHHHhhhhcccc-eeccchhhHHHHHHHHh--cCCeEEEEecCCcHH--------HHHHHhccCCCC---C--C
Q 047161 170 LIALQKQLLSKTLMEIDI-EIRNDFDGIKMIKRELR--RRNVLVVIDDAVHIR--------QLNRLAGKHSWF---G--S 233 (720)
Q Consensus 170 ~~~~~~~il~~~~~~~~~-~~~~~~~~~~~l~~~l~--~kr~LlVLDdv~~~~--------~~~~l~~~~~~~---~--~ 233 (720)
...+...++.++ +.... ...+.......+.+.+. +++++||+||++... .+..+...+... + .
T Consensus 100 ~~~~~~~l~~~l-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~ 178 (412)
T 1w5s_A 100 LYTILSLIVRQT-GYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVN 178 (412)
T ss_dssp HHHHHHHHHHHH-TCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCC
T ss_pred HHHHHHHHHHHh-CCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCc
Confidence 334444444442 11100 01122334555666664 689999999998743 344433333211 1 2
Q ss_pred CCeEEEEcCChhhhhhcc---------ccceEecCCCCHHHHHHHHHHHh---cCC-CCCchHHHHHHHHHHHhC-----
Q 047161 234 GSRIIIPTRDEHLLRTLR---------VDGVYKVEKLDDDEALELFNKRA---FDG-QPSKDYVELIKRIVKYAD----- 295 (720)
Q Consensus 234 gsrIivTTR~~~v~~~~~---------~~~~~~l~~L~~~~s~~Lf~~~a---f~~-~~~~~~~~~~~~i~~~c~----- 295 (720)
.-.||+||+...+...+. ....+++++++.++++++|...+ |.. ... .+....+++.|+
T Consensus 179 ~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~~~ 255 (412)
T 1w5s_A 179 RIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWE---PRHLELISDVYGEDKGG 255 (412)
T ss_dssp BEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCC---HHHHHHHHHHHCGGGTS
T ss_pred eEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCC---hHHHHHHHHHHHHhccC
Confidence 334888888665432211 12238999999999999997653 432 122 345678888999
Q ss_pred -CCchHHHHhh
Q 047161 296 -GLPFALETLG 305 (720)
Q Consensus 296 -glPLai~~~g 305 (720)
|.|..+..+.
T Consensus 256 ~G~p~~~~~l~ 266 (412)
T 1w5s_A 256 DGSARRAIVAL 266 (412)
T ss_dssp CCCHHHHHHHH
T ss_pred CCcHHHHHHHH
Confidence 9997655443
No 159
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.54 E-value=3e-07 Score=96.66 Aligned_cols=178 Identities=19% Similarity=0.231 Sum_probs=104.1
Q ss_pred CCccCCCCCccccchhHHHHHHhhhccCCCeEEEEEecCCCccccc-------------------h------hcHHHHHH
Q 047161 121 PRTLGILDDLVEMNSRLKKLRLLLDAESRDVRMIGICGMGGVELSE-------------------K------DGLIALQK 175 (720)
Q Consensus 121 ~~~~~~~~~~vG~~~~~~~i~~~L~~~~~~~~vi~I~G~gGi~vs~-------------------~------~~~~~~~~ 175 (720)
+.+......+|||+.+++.+.. +.. +++.|+|++|++.|. . .+...+..
T Consensus 6 ~~~~~~~~~~~gR~~el~~L~~-l~~-----~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (357)
T 2fna_A 6 TSPKDNRKDFFDREKEIEKLKG-LRA-----PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERNYISYKDFLL 79 (357)
T ss_dssp SSCCCSGGGSCCCHHHHHHHHH-TCS-----SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGGGTTCSCCCHHHHHH
T ss_pred CCCCCCHHHhcChHHHHHHHHH-hcC-----CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchhhccccCCCHHHHHH
Confidence 3444566789999999999998 742 689999999992111 0 01122222
Q ss_pred HHHHhh-------------hhcc-c-------ceecc---chhhHHHHHHHHhc---CCeEEEEecCCcHH-----H-HH
Q 047161 176 QLLSKT-------------LMEI-D-------IEIRN---DFDGIKMIKRELRR---RNVLVVIDDAVHIR-----Q-LN 222 (720)
Q Consensus 176 ~il~~~-------------~~~~-~-------~~~~~---~~~~~~~l~~~l~~---kr~LlVLDdv~~~~-----~-~~ 222 (720)
.+...+ +... . ..... .......+.+.+.. ++++||+||++..+ + +.
T Consensus 80 ~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~~~~~~~ 159 (357)
T 2fna_A 80 ELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLRGVNLLP 159 (357)
T ss_dssp HHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCTTCCCHH
T ss_pred HHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccCchhHHH
Confidence 222211 0000 0 00000 01123334444432 48999999997632 2 22
Q ss_pred HHhccCCCCCCCCeEEEEcCChhhhhhc-----------c-ccceEecCCCCHHHHHHHHHHHhcC-CCCCchHHHHHHH
Q 047161 223 RLAGKHSWFGSGSRIIIPTRDEHLLRTL-----------R-VDGVYKVEKLDDDEALELFNKRAFD-GQPSKDYVELIKR 289 (720)
Q Consensus 223 ~l~~~~~~~~~gsrIivTTR~~~v~~~~-----------~-~~~~~~l~~L~~~~s~~Lf~~~af~-~~~~~~~~~~~~~ 289 (720)
.+..... ..++.++|+|+|.......+ + ....+++.+|+.+|+.+++...+-. ....... ..
T Consensus 160 ~l~~~~~-~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~----~~ 234 (357)
T 2fna_A 160 ALAYAYD-NLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFKDY----EV 234 (357)
T ss_dssp HHHHHHH-HCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCCCH----HH
T ss_pred HHHHHHH-cCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCCcH----HH
Confidence 2322211 12467899999987542211 1 1257899999999999999874321 1122222 78
Q ss_pred HHHHhCCCchHHHHhhhhcc
Q 047161 290 IVKYADGLPFALETLGSVLF 309 (720)
Q Consensus 290 i~~~c~glPLai~~~g~~l~ 309 (720)
+++.|+|+|+++..++..+.
T Consensus 235 i~~~t~G~P~~l~~~~~~~~ 254 (357)
T 2fna_A 235 VYEKIGGIPGWLTYFGFIYL 254 (357)
T ss_dssp HHHHHCSCHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHc
Confidence 99999999999999887764
No 160
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=98.37 E-value=7.5e-06 Score=80.55 Aligned_cols=173 Identities=17% Similarity=0.135 Sum_probs=109.2
Q ss_pred CCCccccchhHHHHHHhhhccCCCeEEEEEecCCCccccchhcHHHHHHHHHHhhhhcc---------------------
Q 047161 127 LDDLVEMNSRLKKLRLLLDAESRDVRMIGICGMGGVELSEKDGLIALQKQLLSKTLMEI--------------------- 185 (720)
Q Consensus 127 ~~~~vG~~~~~~~i~~~L~~~~~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~~--------------------- 185 (720)
..+++|++..++.+...+..+. ....+.|+|.+|++.+ .+.+.+...+....
T Consensus 22 ~~~~~g~~~~~~~l~~~l~~~~-~~~~~ll~G~~G~GKT------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (250)
T 1njg_A 22 FADVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKT------SIARLLAKGLNCETGITATPCGVCDNCREIEQGRF 94 (250)
T ss_dssp GGGCCSCHHHHHHHHHHHHHTC-CCSEEEEECSTTSCHH------HHHHHHHHHHHCTTCSCSSCCSCSHHHHHHHTTCC
T ss_pred HHHHhCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHH------HHHHHHHHHhcCCCCCCCCCCcccHHHHHHhccCC
Confidence 3569999999999998885432 2347889999999443 33334433321100
Q ss_pred -c-ceec-cchhhHHHHHHHHh--------cCCeEEEEecCCc--HHHHHHHhccCCCCCCCCeEEEEcCChhhh-hhc-
Q 047161 186 -D-IEIR-NDFDGIKMIKRELR--------RRNVLVVIDDAVH--IRQLNRLAGKHSWFGSGSRIIIPTRDEHLL-RTL- 250 (720)
Q Consensus 186 -~-~~~~-~~~~~~~~l~~~l~--------~kr~LlVLDdv~~--~~~~~~l~~~~~~~~~gsrIivTTR~~~v~-~~~- 250 (720)
. .... ........++..+. +++.+||+||++. ...++.+...+.....+.++|+||+..... ...
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~~~l~ 174 (250)
T 1njg_A 95 VDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTIL 174 (250)
T ss_dssp SSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSCHHHH
T ss_pred cceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCCHHHH
Confidence 0 0000 11122233343332 4679999999975 456777776665556678899988765422 111
Q ss_pred cccceEecCCCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHhCCCchHHHHhhhh
Q 047161 251 RVDGVYKVEKLDDDEALELFNKRAFDGQPSKDYVELIKRIVKYADGLPFALETLGSV 307 (720)
Q Consensus 251 ~~~~~~~l~~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~i~~~c~glPLai~~~g~~ 307 (720)
.-...+++++++.++..+++.+.+......-+ .+....++++|+|.|..+..+...
T Consensus 175 ~r~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~-~~~~~~l~~~~~G~~~~~~~~~~~ 230 (250)
T 1njg_A 175 SRCLQFHLKALDVEQIRHQLEHILNEEHIAHE-PRALQLLARAAEGSLRDALSLTDQ 230 (250)
T ss_dssp TTSEEEECCCCCHHHHHHHHHHHHHHTTCCBC-HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHhhhccCCCCCHHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHcCCCHHHHHHHHHH
Confidence 11257899999999999999987754311111 244678999999999988776543
No 161
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.30 E-value=9.6e-09 Score=108.63 Aligned_cols=165 Identities=16% Similarity=0.102 Sum_probs=97.9
Q ss_pred CCCCceeeecCCCCCCCCCCCCcccCccchhhhHHHHhcc-CCCCcEEeccCCCCCcccCCCC-CCCCCCCEEeccCCCC
Q 047161 455 GAPNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIEL-LTGLVFLNLNDCKILVRLPSTI-NGWKSLRTVNLSRCSK 532 (720)
Q Consensus 455 ~l~~L~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~-l~~L~~L~Ls~n~~~~~lp~~i-~~l~~L~~L~L~~~~~ 532 (720)
-+++|+.|+|++|. +.... ...+...+.. .++|+.|+|++|.+...-...+ ..+++|++|+|++|.+
T Consensus 70 ~~~~L~~L~Ls~n~-------l~~~~----~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l 138 (372)
T 3un9_A 70 VLSSLRQLNLAGVR-------MTPVK----CTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSL 138 (372)
T ss_dssp HHTTCCEEECTTSC-------CCHHH----HHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCC
T ss_pred HHhhCCEEEecCCC-------CCHHH----HHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCC
Confidence 36788999998877 23221 1122222332 3689999999987543322222 3466888999998865
Q ss_pred CcccCcCc-----CCCCCCCEEeccCcccccCCc----cccCCcCCceEEEeecCCCCCCCCCcccccccccccccCCCC
Q 047161 533 LENMPESL-----GQMESLEELDVSGTVIRQPVP----SIFFPSRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQKGSSD 603 (720)
Q Consensus 533 l~~lp~~~-----~~L~~L~~L~L~~n~l~~~~~----~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~l~l~~~~ 603 (720)
...-...+ ...++|++|+|++|.+..... ......++|+.|++++|.+.......+
T Consensus 139 ~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L--------------- 203 (372)
T 3un9_A 139 GPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELL--------------- 203 (372)
T ss_dssp CHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHH---------------
T ss_pred CHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHH---------------
Confidence 44322222 346788999999988765221 111223778888887665432100000
Q ss_pred cccccCCCCCCCCCCCcccccEEECCCCCCcc-----ccccccCCCCCceeeccccc
Q 047161 604 SMALMLPSLSGLCSLTELNLKKLNLRRNNFVS-----LRGTINHLPKFKHLKLDDCK 655 (720)
Q Consensus 604 ~~~~~~~~l~~l~~L~~L~L~~L~Ls~n~l~~-----lp~~i~~l~~L~~L~L~~c~ 655 (720)
...+...++| +.|+|++|.++. ++..+...++|++|+|++|+
T Consensus 204 -----~~~L~~~~~L-----~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 204 -----AAQLDRNRQL-----QELNVAYNGAGDTAALALARAAREHPSLELLHLYFNE 250 (372)
T ss_dssp -----HHHGGGCSCC-----CEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSS
T ss_pred -----HHHHhcCCCc-----CeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCC
Confidence 0012233333 788889998873 34455667889999999985
No 162
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.23 E-value=2.9e-08 Score=104.93 Aligned_cols=86 Identities=14% Similarity=0.013 Sum_probs=44.2
Q ss_pred CCCCcEEeccCCCCCcccCCCC-----CCCCCCCEEeccCCCCCc----ccCcCcCCCCCCCEEeccCcccccCC----c
Q 047161 495 LTGLVFLNLNDCKILVRLPSTI-----NGWKSLRTVNLSRCSKLE----NMPESLGQMESLEELDVSGTVIRQPV----P 561 (720)
Q Consensus 495 l~~L~~L~Ls~n~~~~~lp~~i-----~~l~~L~~L~L~~~~~l~----~lp~~~~~L~~L~~L~L~~n~l~~~~----~ 561 (720)
+++|+.|+|++|.+...-...+ ...++|++|+|++|.+.. .++..+..+++|++|+|++|.+.... .
T Consensus 125 L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~ 204 (372)
T 3un9_A 125 FLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLA 204 (372)
T ss_dssp HHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHH
T ss_pred HHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHH
Confidence 4466677777666432222222 234566777777665432 23334455666777777776655321 1
Q ss_pred cccCCcCCceEEEeecCCC
Q 047161 562 SIFFPSRILKVYLFVDTRD 580 (720)
Q Consensus 562 ~~~~~~~~L~~L~l~~~~~ 580 (720)
..+...++|+.|++++|.+
T Consensus 205 ~~L~~~~~L~~L~Ls~N~i 223 (372)
T 3un9_A 205 AQLDRNRQLQELNVAYNGA 223 (372)
T ss_dssp HHGGGCSCCCEEECCSSCC
T ss_pred HHHhcCCCcCeEECCCCCC
Confidence 1122225666666655543
No 163
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.18 E-value=4.1e-05 Score=81.54 Aligned_cols=16 Identities=25% Similarity=0.324 Sum_probs=11.2
Q ss_pred CCCCCCCceeeecCCC
Q 047161 452 DFTGAPNLEELILDGC 467 (720)
Q Consensus 452 ~~~~l~~L~~L~L~~~ 467 (720)
.|.++++|+.+.+..+
T Consensus 157 aF~~c~~L~~i~l~~~ 172 (394)
T 4fs7_A 157 AFATCESLEYVSLPDS 172 (394)
T ss_dssp TTTTCTTCCEEECCTT
T ss_pred hhcccCCCcEEecCCc
Confidence 4677777877777654
No 164
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.10 E-value=0.0001 Score=78.08 Aligned_cols=192 Identities=13% Similarity=0.019 Sum_probs=112.4
Q ss_pred CCccccchhHHHHHHhhhc--cCCCeEEEEEecCCCccccchh--------------------------------cHHHH
Q 047161 128 DDLVEMNSRLKKLRLLLDA--ESRDVRMIGICGMGGVELSEKD--------------------------------GLIAL 173 (720)
Q Consensus 128 ~~~vG~~~~~~~i~~~L~~--~~~~~~vi~I~G~gGi~vs~~~--------------------------------~~~~~ 173 (720)
+.++||+..++++...+.. .....+.+.|+|++|++.+.-. +...+
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 99 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAV 99 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHH
Confidence 6799999999999888753 2344568999999999322110 11222
Q ss_pred HHHHHHhhhhcccc-eeccchhhHHHHHHHHhcCCeEEEEecCCcHHH---HHH-HhccCCCCCCCCeEEEEcCChhhhh
Q 047161 174 QKQLLSKTLMEIDI-EIRNDFDGIKMIKRELRRRNVLVVIDDAVHIRQ---LNR-LAGKHSWFGSGSRIIIPTRDEHLLR 248 (720)
Q Consensus 174 ~~~il~~~~~~~~~-~~~~~~~~~~~l~~~l~~kr~LlVLDdv~~~~~---~~~-l~~~~~~~~~gsrIivTTR~~~v~~ 248 (720)
..+++.++.+.... ...........+.+.+..++.+|||||++.... .+. +...+.+. .+.+||+||+......
T Consensus 100 ~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~-~~~~iI~~t~~~~~~~ 178 (384)
T 2qby_B 100 LSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSD-ANISVIMISNDINVRD 178 (384)
T ss_dssp HHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSS-SCEEEEEECSSTTTTT
T ss_pred HHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCC-cceEEEEEECCCchHh
Confidence 22333332111000 001123445566667777777999999987643 222 22222222 6788999998753211
Q ss_pred ----hc--cccceEecCCCCHHHHHHHHHHHh---cCC-CCCchHHHHHHHHHHHhC---CCch-HHHHhhhhc--c-C-
Q 047161 249 ----TL--RVDGVYKVEKLDDDEALELFNKRA---FDG-QPSKDYVELIKRIVKYAD---GLPF-ALETLGSVL--F-G- 310 (720)
Q Consensus 249 ----~~--~~~~~~~l~~L~~~~s~~Lf~~~a---f~~-~~~~~~~~~~~~i~~~c~---glPL-ai~~~g~~l--~-~- 310 (720)
.. .....+++++++.++..+++...+ |.. ...+ +....++++|+ |.|. |+..+.... . +
T Consensus 179 ~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~~~ 255 (384)
T 2qby_B 179 YMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDD---EILSYIAAISAKEHGDARKAVNLLFRAAQLASGG 255 (384)
T ss_dssp TSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCS---HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTSS
T ss_pred hhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCH---HHHHHHHHHHHhccCCHHHHHHHHHHHHHHhcCC
Confidence 11 112389999999999999999874 433 2232 33456677777 8876 433332222 1 1
Q ss_pred --CCHHHHHHHHhhh
Q 047161 311 --RSVDGWRSTLERL 323 (720)
Q Consensus 311 --k~~~~W~~~l~~l 323 (720)
-+.+.++.++++.
T Consensus 256 ~~i~~~~v~~~~~~~ 270 (384)
T 2qby_B 256 GIIRKEHVDKAIVDY 270 (384)
T ss_dssp SCCCHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHH
Confidence 3677787777654
No 165
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=98.07 E-value=4.2e-05 Score=73.98 Aligned_cols=169 Identities=13% Similarity=0.112 Sum_probs=104.5
Q ss_pred CCCccccchhHHHHHHhhhccCCCeEEEEEecCCCccccchhcHHHHHHHHHHhhhhc----cccee-----ccchhhHH
Q 047161 127 LDDLVEMNSRLKKLRLLLDAESRDVRMIGICGMGGVELSEKDGLIALQKQLLSKTLME----IDIEI-----RNDFDGIK 197 (720)
Q Consensus 127 ~~~~vG~~~~~~~i~~~L~~~~~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~----~~~~~-----~~~~~~~~ 197 (720)
..+++|++..++.+..++... ....+.|+|..|++. ..+.+.+...+... ..... ........
T Consensus 16 ~~~~~g~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GK------T~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (226)
T 2chg_A 16 LDEVVGQDEVIQRLKGYVERK--NIPHLLFSGPPGTGK------TATAIALARDLFGENWRDNFIEMNASDERGIDVVRH 87 (226)
T ss_dssp GGGCCSCHHHHHHHHHHHHTT--CCCCEEEECSTTSSH------HHHHHHHHHHHHGGGGGGGEEEEETTCTTCHHHHHH
T ss_pred HHHHcCcHHHHHHHHHHHhCC--CCCeEEEECCCCCCH------HHHHHHHHHHHhccccccceEEeccccccChHHHHH
Confidence 457999999999999988643 233388999999943 34444444432111 11111 11122233
Q ss_pred HHHHHHh------cCCeEEEEecCCcH--HHHHHHhccCCCCCCCCeEEEEcCChhhh-hhc-cccceEecCCCCHHHHH
Q 047161 198 MIKRELR------RRNVLVVIDDAVHI--RQLNRLAGKHSWFGSGSRIIIPTRDEHLL-RTL-RVDGVYKVEKLDDDEAL 267 (720)
Q Consensus 198 ~l~~~l~------~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIivTTR~~~v~-~~~-~~~~~~~l~~L~~~~s~ 267 (720)
.+..... +++.+||+||++.. ..++.+...+.....+.++|+||+..... ... .--..+++.+++.++..
T Consensus 88 ~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~~i~~~~~~~~~~~ 167 (226)
T 2chg_A 88 KIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMK 167 (226)
T ss_dssp HHHHHHTSCCSTTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHH
T ss_pred HHHHHhcccCCCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCceeecCCCCHHHHH
Confidence 3444332 57889999999864 44556665555556678899998765321 111 11137899999999999
Q ss_pred HHHHHHhcCCCCCchHHHHHHHHHHHhCCCchHHHHh
Q 047161 268 ELFNKRAFDGQPSKDYVELIKRIVKYADGLPFALETL 304 (720)
Q Consensus 268 ~Lf~~~af~~~~~~~~~~~~~~i~~~c~glPLai~~~ 304 (720)
+++.+.+......-+ .+....+++.++|.|..+..+
T Consensus 168 ~~l~~~~~~~~~~~~-~~~~~~l~~~~~g~~r~l~~~ 203 (226)
T 2chg_A 168 KRLLEICEKEGVKIT-EDGLEALIYISGGDFRKAINA 203 (226)
T ss_dssp HHHHHHHHHHTCCBC-HHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHcCCCCC-HHHHHHHHHHcCCCHHHHHHH
Confidence 999887643211111 244567889999999865543
No 166
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=98.07 E-value=9.5e-05 Score=78.32 Aligned_cols=193 Identities=13% Similarity=0.088 Sum_probs=107.4
Q ss_pred CCCccccchhHHHHHHhhhcc--CCCeEEEEEecCCCccccchh-----------------------------cHHHHHH
Q 047161 127 LDDLVEMNSRLKKLRLLLDAE--SRDVRMIGICGMGGVELSEKD-----------------------------GLIALQK 175 (720)
Q Consensus 127 ~~~~vG~~~~~~~i~~~L~~~--~~~~~vi~I~G~gGi~vs~~~-----------------------------~~~~~~~ 175 (720)
++.++||+..++++..++... ....+.+.|+|++|++.+.-. +...+..
T Consensus 18 p~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 97 (387)
T 2v1u_A 18 PDVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVAS 97 (387)
T ss_dssp CSCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHH
Confidence 478999999999999988532 345667889999999332211 1112222
Q ss_pred HHHHhhhhcccceeccchhhHHHHHHHH--hcCCeEEEEecCCcHHH-------HHHHhccCCCC--CCCCeEEEEcCCh
Q 047161 176 QLLSKTLMEIDIEIRNDFDGIKMIKREL--RRRNVLVVIDDAVHIRQ-------LNRLAGKHSWF--GSGSRIIIPTRDE 244 (720)
Q Consensus 176 ~il~~~~~~~~~~~~~~~~~~~~l~~~l--~~kr~LlVLDdv~~~~~-------~~~l~~~~~~~--~~gsrIivTTR~~ 244 (720)
.++.++............+....+.+.+ .+++.+|||||++.... +..+....... ..+..+|.||+..
T Consensus 98 ~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~~ 177 (387)
T 2v1u_A 98 AIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNSL 177 (387)
T ss_dssp HHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSCS
T ss_pred HHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECCC
Confidence 2333210000000011223345555566 34688999999987542 22222222211 4466788888765
Q ss_pred hh--------hhhccccceEecCCCCHHHHHHHHHHHh---cCC-CCCchHHHHHHHHHHHhC---CCch-HHHHhhhhc
Q 047161 245 HL--------LRTLRVDGVYKVEKLDDDEALELFNKRA---FDG-QPSKDYVELIKRIVKYAD---GLPF-ALETLGSVL 308 (720)
Q Consensus 245 ~v--------~~~~~~~~~~~l~~L~~~~s~~Lf~~~a---f~~-~~~~~~~~~~~~i~~~c~---glPL-ai~~~g~~l 308 (720)
.. ...++ ...+.+++++.++..+++...+ +.. ...++ ....++++++ |.|- |+..+....
T Consensus 178 ~~~~~l~~~l~~r~~-~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~G~~r~~~~~l~~a~ 253 (387)
T 2v1u_A 178 GFVENLEPRVKSSLG-EVELVFPPYTAPQLRDILETRAEEAFNPGVLDPD---VVPLCAALAAREHGDARRALDLLRVAG 253 (387)
T ss_dssp TTSSSSCHHHHTTTT-SEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSS---HHHHHHHHHHSSSCCHHHHHHHHHHHH
T ss_pred chHhhhCHHHHhcCC-CeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHH---HHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 32 22222 1478999999999999998874 333 22332 3456777777 9993 333332222
Q ss_pred c-----C---CCHHHHHHHHhhh
Q 047161 309 F-----G---RSVDGWRSTLERL 323 (720)
Q Consensus 309 ~-----~---k~~~~W~~~l~~l 323 (720)
. + -+.+.++.++...
T Consensus 254 ~~a~~~~~~~i~~~~v~~a~~~~ 276 (387)
T 2v1u_A 254 EIAERRREERVRREHVYSARAEI 276 (387)
T ss_dssp HHHHHTTCSCBCHHHHHHHHHHH
T ss_pred HHHHHcCCCCcCHHHHHHHHHHH
Confidence 1 2 2566777766543
No 167
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.02 E-value=4.4e-05 Score=78.76 Aligned_cols=170 Identities=16% Similarity=0.189 Sum_probs=101.9
Q ss_pred CCCccccchhHHHHHHhhhccCCCeEEEEEecCCCccccchhcHHHHHHHHHHhhhhc----cccee-----ccchhhHH
Q 047161 127 LDDLVEMNSRLKKLRLLLDAESRDVRMIGICGMGGVELSEKDGLIALQKQLLSKTLME----IDIEI-----RNDFDGIK 197 (720)
Q Consensus 127 ~~~~vG~~~~~~~i~~~L~~~~~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~----~~~~~-----~~~~~~~~ 197 (720)
.++++|++..++.+.+++..+ ....+-|+|.+|++. ..+.+.+...+... ..... ...+...+
T Consensus 20 ~~~~~g~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GK------t~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~ 91 (323)
T 1sxj_B 20 LSDIVGNKETIDRLQQIAKDG--NMPHMIISGMPGIGK------TTSVHCLAHELLGRSYADGVLELNASDDRGIDVVRN 91 (323)
T ss_dssp GGGCCSCTHHHHHHHHHHHSC--CCCCEEEECSTTSSH------HHHHHHHHHHHHGGGHHHHEEEECTTSCCSHHHHHT
T ss_pred HHHHHCCHHHHHHHHHHHHcC--CCCeEEEECcCCCCH------HHHHHHHHHHhcCCcccCCEEEecCccccChHHHHH
Confidence 356999999999999988543 333388999999843 33344444332110 00111 11122222
Q ss_pred HHHHHH-------hcCCeEEEEecCCc--HHHHHHHhccCCCCCCCCeEEEEcCChh-hhhhc-cccceEecCCCCHHHH
Q 047161 198 MIKREL-------RRRNVLVVIDDAVH--IRQLNRLAGKHSWFGSGSRIIIPTRDEH-LLRTL-RVDGVYKVEKLDDDEA 266 (720)
Q Consensus 198 ~l~~~l-------~~kr~LlVLDdv~~--~~~~~~l~~~~~~~~~gsrIivTTR~~~-v~~~~-~~~~~~~l~~L~~~~s 266 (720)
.+.... .+++.++|+||++. ...++.+...+.....+.++|+||+... +.... .-...+++.+++.++.
T Consensus 92 ~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~ 171 (323)
T 1sxj_B 92 QIKHFAQKKLHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAILRYSKLSDEDV 171 (323)
T ss_dssp HHHHHHHBCCCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHH
T ss_pred HHHHHHhccccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhceEEeecCCCHHHH
Confidence 333333 34588999999986 3445555555544456788888887643 21111 1123799999999999
Q ss_pred HHHHHHHhcCCCCCchHHHHHHHHHHHhCCCchH-HHHhh
Q 047161 267 LELFNKRAFDGQPSKDYVELIKRIVKYADGLPFA-LETLG 305 (720)
Q Consensus 267 ~~Lf~~~af~~~~~~~~~~~~~~i~~~c~glPLa-i~~~g 305 (720)
.+++...+......-+ .+....+++.|+|.|.. +..+.
T Consensus 172 ~~~l~~~~~~~~~~~~-~~~~~~l~~~~~G~~r~a~~~l~ 210 (323)
T 1sxj_B 172 LKRLLQIIKLEDVKYT-NDGLEAIIFTAEGDMRQAINNLQ 210 (323)
T ss_dssp HHHHHHHHHHHTCCBC-HHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCC-HHHHHHHHHHcCCCHHHHHHHHH
Confidence 9999887642211111 24457789999999954 44443
No 168
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.99 E-value=0.00015 Score=77.10 Aligned_cols=76 Identities=14% Similarity=0.111 Sum_probs=34.8
Q ss_pred CCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCCCcccCcCcCCCCCCCEEeccCcccccCCccccCCcCCceEEE
Q 047161 495 LTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMPESLGQMESLEELDVSGTVIRQPVPSIFFPSRILKVYL 574 (720)
Q Consensus 495 l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ 574 (720)
...|+.+.+..+. ...-...+.++.+|+.+.+..+ ....-...+..+..|+.+....+. ++...+..+.+|+.+.
T Consensus 229 ~~~l~~i~ip~~~-~~i~~~~f~~~~~l~~~~~~~~-~~~i~~~~F~~~~~l~~~~~~~~~---i~~~~F~~~~~L~~i~ 303 (394)
T 4fs7_A 229 KTGVKNIIIPDSF-TELGKSVFYGCTDLESISIQNN-KLRIGGSLFYNCSGLKKVIYGSVI---VPEKTFYGCSSLTEVK 303 (394)
T ss_dssp TCCCCEEEECTTC-CEECSSTTTTCSSCCEEEECCT-TCEECSCTTTTCTTCCEEEECSSE---ECTTTTTTCTTCCEEE
T ss_pred cCCCceEEECCCc-eecccccccccccceeEEcCCC-cceeeccccccccccceeccCcee---eccccccccccccccc
Confidence 3455555554332 2222234455566666666543 222223345555556655554432 2223333345555555
Q ss_pred e
Q 047161 575 F 575 (720)
Q Consensus 575 l 575 (720)
+
T Consensus 304 l 304 (394)
T 4fs7_A 304 L 304 (394)
T ss_dssp E
T ss_pred c
Confidence 5
No 169
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.94 E-value=3.8e-05 Score=81.38 Aligned_cols=173 Identities=18% Similarity=0.145 Sum_probs=98.8
Q ss_pred CCCCccccchhHHHHHHhhhcc--CCCeEEEEEecCCCccccchhc--------------------------HHHHHHHH
Q 047161 126 ILDDLVEMNSRLKKLRLLLDAE--SRDVRMIGICGMGGVELSEKDG--------------------------LIALQKQL 177 (720)
Q Consensus 126 ~~~~~vG~~~~~~~i~~~L~~~--~~~~~vi~I~G~gGi~vs~~~~--------------------------~~~~~~~i 177 (720)
.++.++||+.+++.+..++... ....+.+.|+|++|++.+.-.. ...+...+
T Consensus 18 ~p~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i 97 (386)
T 2qby_A 18 IPDELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADL 97 (386)
T ss_dssp CCSCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHH
T ss_pred CCCCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHH
Confidence 3478999999999999988632 3456688999999993332110 01111111
Q ss_pred HHhhhhccc-ceeccchhhHHHHHHHHh--cCCeEEEEecCCcHH------HHHHHhccCCC-CCCCCeEEEEcCChhhh
Q 047161 178 LSKTLMEID-IEIRNDFDGIKMIKRELR--RRNVLVVIDDAVHIR------QLNRLAGKHSW-FGSGSRIIIPTRDEHLL 247 (720)
Q Consensus 178 l~~~~~~~~-~~~~~~~~~~~~l~~~l~--~kr~LlVLDdv~~~~------~~~~l~~~~~~-~~~gsrIivTTR~~~v~ 247 (720)
+..+ +... ....+..+..+.+.+.+. +++.+||||+++... .+..+...... ...+..+|+||+.....
T Consensus 98 ~~~l-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~ 176 (386)
T 2qby_A 98 LESL-DVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFV 176 (386)
T ss_dssp TTTT-SCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGG
T ss_pred HHHh-CCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChH
Confidence 1111 0000 000112233445555554 458999999997643 24444333321 23355678888876543
Q ss_pred hhcc------c-cceEecCCCCHHHHHHHHHHHh---cCC-CCCchHHHHHHHHHHHhC---CCchHHH
Q 047161 248 RTLR------V-DGVYKVEKLDDDEALELFNKRA---FDG-QPSKDYVELIKRIVKYAD---GLPFALE 302 (720)
Q Consensus 248 ~~~~------~-~~~~~l~~L~~~~s~~Lf~~~a---f~~-~~~~~~~~~~~~i~~~c~---glPLai~ 302 (720)
..+. . ...+++++++.++..+++...+ +.. ... .+....++++++ |.|..+.
T Consensus 177 ~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~G~~r~~~ 242 (386)
T 2qby_A 177 DLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLP---DNVIKLCAALAAREHGDARRAL 242 (386)
T ss_dssp GGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSC---HHHHHHHHHHHHHTTCCHHHHH
T ss_pred hhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCC---HHHHHHHHHHHHHhcCCHHHHH
Confidence 3221 1 1479999999999999998864 322 222 334556666776 9987443
No 170
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.93 E-value=1.7e-06 Score=90.66 Aligned_cols=91 Identities=13% Similarity=0.161 Sum_probs=55.2
Q ss_pred CCCCCCceeeecCCCCCCCCCCCCcccCcc-chhhhHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCC
Q 047161 453 FTGAPNLEELILDGCKRLQNCTSLTTLPRE-IATESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCS 531 (720)
Q Consensus 453 ~~~l~~L~~L~L~~~~~l~~~~~L~~lp~~-~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~ 531 (720)
...+++|+.|.+.+.. . .....+ ...+.+...+..+++|+.|+|++|... .+|. + .+++|++|+|..|.
T Consensus 135 ~~~l~~L~~L~l~~~~-~------e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~ 204 (362)
T 2ra8_A 135 KEKFAHFEGLFWGDID-F------EEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGG 204 (362)
T ss_dssp HHHHTTCSEEEECCCC-T------TTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSB
T ss_pred hhhcchhhheeecCcc-h------hhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCC
Confidence 4567899999887643 1 110000 011234445777889999999887422 3444 4 37889999988775
Q ss_pred CCcccCcCc--CCCCCCCEEeccC
Q 047161 532 KLENMPESL--GQMESLEELDVSG 553 (720)
Q Consensus 532 ~l~~lp~~~--~~L~~L~~L~L~~ 553 (720)
+.......+ ..+++|++|+|+.
T Consensus 205 l~~~~l~~l~~~~lp~L~~L~L~~ 228 (362)
T 2ra8_A 205 LPDSVVEDILGSDLPNLEKLVLYV 228 (362)
T ss_dssp CCHHHHHHHHHSBCTTCCEEEEEC
T ss_pred CChHHHHHHHHccCCCCcEEEEec
Confidence 433222223 2678888888753
No 171
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.83 E-value=4.4e-06 Score=87.47 Aligned_cols=15 Identities=13% Similarity=0.025 Sum_probs=10.7
Q ss_pred hhccCCcceEEEecc
Q 047161 378 FLKMTNLRLLKIHNL 392 (720)
Q Consensus 378 ~~~l~~L~~L~l~~~ 392 (720)
...+++|+.|.+.++
T Consensus 135 ~~~l~~L~~L~l~~~ 149 (362)
T 2ra8_A 135 KEKFAHFEGLFWGDI 149 (362)
T ss_dssp HHHHTTCSEEEECCC
T ss_pred hhhcchhhheeecCc
Confidence 456778888888664
No 172
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.78 E-value=7.4e-06 Score=81.34 Aligned_cols=82 Identities=22% Similarity=0.193 Sum_probs=60.6
Q ss_pred hccCCCCcEEeccCCCCCc--ccCCCCCCCCCCCEEeccCCCCCcccCcCcCCCC--CCCEEeccCcccccCCc------
Q 047161 492 IELLTGLVFLNLNDCKILV--RLPSTINGWKSLRTVNLSRCSKLENMPESLGQME--SLEELDVSGTVIRQPVP------ 561 (720)
Q Consensus 492 i~~l~~L~~L~Ls~n~~~~--~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~L~--~L~~L~L~~n~l~~~~~------ 561 (720)
..++++|+.|+|++|.+.+ .+|..++.+++|++|+|++|.+.+. ..+..+. +|++|+|++|.+.+..+
T Consensus 166 ~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~ 243 (267)
T 3rw6_A 166 EENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYI 243 (267)
T ss_dssp HHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHH
T ss_pred HhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHH
Confidence 4678999999999999665 5567777899999999999876543 2344444 89999999999886443
Q ss_pred -cccCCcCCceEEEe
Q 047161 562 -SIFFPSRILKVYLF 575 (720)
Q Consensus 562 -~~~~~~~~L~~L~l 575 (720)
.+...+++|+.|+-
T Consensus 244 ~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 244 SAIRERFPKLLRLDG 258 (267)
T ss_dssp HHHHHHCTTCCEESS
T ss_pred HHHHHHCcccCeECC
Confidence 23344577877764
No 173
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.70 E-value=0.00049 Score=72.83 Aligned_cols=176 Identities=14% Similarity=0.147 Sum_probs=103.0
Q ss_pred CCCccccchhHHHHHHhhhc----cCCCeEEEEEecCCCccccc------------------------hhcHHHHHHHHH
Q 047161 127 LDDLVEMNSRLKKLRLLLDA----ESRDVRMIGICGMGGVELSE------------------------KDGLIALQKQLL 178 (720)
Q Consensus 127 ~~~~vG~~~~~~~i~~~L~~----~~~~~~vi~I~G~gGi~vs~------------------------~~~~~~~~~~il 178 (720)
++.++||+..++++...+.. +....+.+.|+|..|++.+. ..+...+...++
T Consensus 16 p~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~ 95 (389)
T 1fnn_A 16 PKRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGEIA 95 (389)
T ss_dssp CSCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSHHHHHHHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCHHHHHHHHH
Confidence 37799999999999988853 22234588999999992221 111223333333
Q ss_pred Hhhhhcccc-eeccchhhHHHHHHHHh--cCCeEEEEecCCcH--HHHHHHhccCCCCC----CCCeEEEEcCChhhhhh
Q 047161 179 SKTLMEIDI-EIRNDFDGIKMIKRELR--RRNVLVVIDDAVHI--RQLNRLAGKHSWFG----SGSRIIIPTRDEHLLRT 249 (720)
Q Consensus 179 ~~~~~~~~~-~~~~~~~~~~~l~~~l~--~kr~LlVLDdv~~~--~~~~~l~~~~~~~~----~gsrIivTTR~~~v~~~ 249 (720)
..+ +.... .........+.+.+.+. +++.+|||||++.. +....+...+.... .+-.||+||++..+...
T Consensus 96 ~~l-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~ 174 (389)
T 1fnn_A 96 RSL-NIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNN 174 (389)
T ss_dssp HHT-TCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHT
T ss_pred HHh-CccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHH
Confidence 332 11000 01122233444555553 56889999999863 44566655543222 36678888887654333
Q ss_pred cc------c-cceEecCCCCHHHHHHHHHHHhcCC-CCCchHHHHHHHHHHHh---------CCCchHHHH
Q 047161 250 LR------V-DGVYKVEKLDDDEALELFNKRAFDG-QPSKDYVELIKRIVKYA---------DGLPFALET 303 (720)
Q Consensus 250 ~~------~-~~~~~l~~L~~~~s~~Lf~~~af~~-~~~~~~~~~~~~i~~~c---------~glPLai~~ 303 (720)
.. . ...+.+++++.++..+++...+-.. ....--.+....+++++ +|.|-.+..
T Consensus 175 l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~ 245 (389)
T 1fnn_A 175 LDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAID 245 (389)
T ss_dssp SCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHH
T ss_pred hCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHH
Confidence 21 1 1368999999999999998875321 01111134567788888 788754443
No 174
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=97.63 E-value=0.00091 Score=68.83 Aligned_cols=169 Identities=17% Similarity=0.157 Sum_probs=103.6
Q ss_pred CCCccccchhHHHHHHhhhccCCCeEEEEEecCCCccccchhcHHHHHHHHHHhhhhcc----cceec-----cchhhHH
Q 047161 127 LDDLVEMNSRLKKLRLLLDAESRDVRMIGICGMGGVELSEKDGLIALQKQLLSKTLMEI----DIEIR-----NDFDGIK 197 (720)
Q Consensus 127 ~~~~vG~~~~~~~i~~~L~~~~~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~~----~~~~~-----~~~~~~~ 197 (720)
.++++|++..++.+..++..+ ....+-|+|..|++. ..+.+.+...+.... ..... ..+....
T Consensus 24 ~~~~~g~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GK------T~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (327)
T 1iqp_A 24 LDDIVGQEHIVKRLKHYVKTG--SMPHLLFAGPPGVGK------TTAALALARELFGENWRHNFLELNASDERGINVIRE 95 (327)
T ss_dssp TTTCCSCHHHHHHHHHHHHHT--CCCEEEEESCTTSSH------HHHHHHHHHHHHGGGHHHHEEEEETTCHHHHHTTHH
T ss_pred HHHhhCCHHHHHHHHHHHHcC--CCCeEEEECcCCCCH------HHHHHHHHHHhcCCcccCceEEeeccccCchHHHHH
Confidence 457999999999999888643 333488999999843 334444444321110 11111 1112222
Q ss_pred HHHHHHh------cCCeEEEEecCCcH--HHHHHHhccCCCCCCCCeEEEEcCChhh-hhhc-cccceEecCCCCHHHHH
Q 047161 198 MIKRELR------RRNVLVVIDDAVHI--RQLNRLAGKHSWFGSGSRIIIPTRDEHL-LRTL-RVDGVYKVEKLDDDEAL 267 (720)
Q Consensus 198 ~l~~~l~------~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIivTTR~~~v-~~~~-~~~~~~~l~~L~~~~s~ 267 (720)
.+..... +++.++|+||++.. +.++.+...+.....+.++|+||....- .... .-...+++.+++.++..
T Consensus 96 ~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~l~~~~~~ 175 (327)
T 1iqp_A 96 KVKEFARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIA 175 (327)
T ss_dssp HHHHHHHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTEEEEECCCCCHHHHH
T ss_pred HHHHHHhhCCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhCcEEEecCCCHHHHH
Confidence 3333322 56889999999863 4566666665555667889988876432 1111 01127899999999999
Q ss_pred HHHHHHhcCCCCCchHHHHHHHHHHHhCCCchHHHHh
Q 047161 268 ELFNKRAFDGQPSKDYVELIKRIVKYADGLPFALETL 304 (720)
Q Consensus 268 ~Lf~~~af~~~~~~~~~~~~~~i~~~c~glPLai~~~ 304 (720)
+++...+......- -.+....+++.++|.|..+..+
T Consensus 176 ~~l~~~~~~~~~~~-~~~~~~~l~~~~~g~~r~~~~~ 211 (327)
T 1iqp_A 176 KRLRYIAENEGLEL-TEEGLQAILYIAEGDMRRAINI 211 (327)
T ss_dssp HHHHHHHHTTTCEE-CHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHhcCCCC-CHHHHHHHHHHCCCCHHHHHHH
Confidence 99988765431111 1244567888999999866544
No 175
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.62 E-value=2e-05 Score=74.14 Aligned_cols=118 Identities=15% Similarity=0.157 Sum_probs=81.0
Q ss_pred CCCCCCceeeecCCCCCCCCCCCCcccCccchhhhHHHHhccCCCCcEEeccCCCCCc----ccCCCCCCCCCCCEEecc
Q 047161 453 FTGAPNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILV----RLPSTINGWKSLRTVNLS 528 (720)
Q Consensus 453 ~~~l~~L~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~----~lp~~i~~l~~L~~L~L~ 528 (720)
+...++|++|+|++|..+ .. .....+...+...++|++|+|++|.+.. .+...+...++|++|+|+
T Consensus 32 l~~~~~L~~L~L~~n~~i------~~----~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~ 101 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNI------PV----PTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVE 101 (185)
T ss_dssp HTTCTTCCEEECTTCTTC------CH----HHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECC
T ss_pred HhcCCCCCEEEecCCCCC------CH----HHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECc
Confidence 567789999999998322 11 1122344447778999999999998543 234445566889999999
Q ss_pred CCCCCcc----cCcCcCCCCCCCEEec--cCcccccCC----ccccCCcCCceEEEeecCCC
Q 047161 529 RCSKLEN----MPESLGQMESLEELDV--SGTVIRQPV----PSIFFPSRILKVYLFVDTRD 580 (720)
Q Consensus 529 ~~~~l~~----lp~~~~~L~~L~~L~L--~~n~l~~~~----~~~~~~~~~L~~L~l~~~~~ 580 (720)
+|.+... +...+...++|++|+| ++|.+...- .......++|+.|++++|.+
T Consensus 102 ~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 102 SNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp SSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred CCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 9976542 4566777889999999 888876521 11222237899999876654
No 176
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.62 E-value=4.4e-05 Score=75.72 Aligned_cols=83 Identities=20% Similarity=0.228 Sum_probs=62.4
Q ss_pred CCCCCceeeecCCCCCCCCCCCCcccCccchhhhHHHHhccCCCCcEEeccCCCCCcccCCCCCCCC--CCCEEeccCCC
Q 047161 454 TGAPNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWK--SLRTVNLSRCS 531 (720)
Q Consensus 454 ~~l~~L~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~--~L~~L~L~~~~ 531 (720)
..+++|+.|+|++|. + ..+..+|.. ++.+++|++|+|++|.+.+ + ..+..+. +|++|+|++|.
T Consensus 167 ~~l~~L~~L~Ls~N~-l---~~l~~l~~~---------~~~l~~L~~L~Ls~N~i~~-~-~~l~~l~~l~L~~L~L~~Np 231 (267)
T 3rw6_A 167 ENIPELLSLNLSNNR-L---YRLDDMSSI---------VQKAPNLKILNLSGNELKS-E-RELDKIKGLKLEELWLDGNS 231 (267)
T ss_dssp HHCTTCCEEECTTSC-C---CCCGGGTTH---------HHHSTTCCEEECTTSCCCS-G-GGGGGGTTSCCSEEECTTST
T ss_pred hhCCCCCEEECCCCC-C---CCCccchhH---------HhhCCCCCEEECCCCccCC-c-hhhhhcccCCcceEEccCCc
Confidence 357899999999998 1 222334443 7789999999999999544 3 3355555 99999999999
Q ss_pred CCcccCc-------CcCCCCCCCEEec
Q 047161 532 KLENMPE-------SLGQMESLEELDV 551 (720)
Q Consensus 532 ~l~~lp~-------~~~~L~~L~~L~L 551 (720)
+.+.+|. .+..+++|+.||=
T Consensus 232 l~~~~~~~~~y~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 232 LCDTFRDQSTYISAIRERFPKLLRLDG 258 (267)
T ss_dssp TGGGCSSHHHHHHHHHHHCTTCCEESS
T ss_pred CccccCcchhHHHHHHHHCcccCeECC
Confidence 8877763 3678999999863
No 177
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.60 E-value=0.0024 Score=67.75 Aligned_cols=214 Identities=8% Similarity=0.144 Sum_probs=99.8
Q ss_pred CCCCCCceeeecCCCCCCCCCCCCcccCccchhhhHHHHhccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCC
Q 047161 453 FTGAPNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSK 532 (720)
Q Consensus 453 ~~~l~~L~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~ 532 (720)
|..+.+|+.+.+..+. ..++... +..+..|+.+.+..+ +..+........+|+.+.+..+ .
T Consensus 133 F~~c~~L~~i~lp~~~--------~~I~~~~--------F~~c~~L~~i~~~~~--~~~I~~~aF~~~~l~~i~ip~~-~ 193 (394)
T 4gt6_A 133 FHHCEELDTVTIPEGV--------TSVADGM--------FSYCYSLHTVTLPDS--VTAIEERAFTGTALTQIHIPAK-V 193 (394)
T ss_dssp TTTCTTCCEEECCTTC--------CEECTTT--------TTTCTTCCEEECCTT--CCEECTTTTTTCCCSEEEECTT-C
T ss_pred hhhhccccccccccee--------eeecccc--------eecccccccccccce--eeEeccccccccceeEEEECCc-c
Confidence 5667777777775432 4444433 555667777776654 2333333333456666666553 2
Q ss_pred CcccCcCcCCCCCCCEEeccCcccccCCccccCC-------------cCCceEEEeecCCCCCCCCCccccccccccccc
Q 047161 533 LENMPESLGQMESLEELDVSGTVIRQPVPSIFFP-------------SRILKVYLFVDTRDHRTSSSSWHLWFPFSLMQK 599 (720)
Q Consensus 533 l~~lp~~~~~L~~L~~L~L~~n~l~~~~~~~~~~-------------~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~l~l 599 (720)
...-...+..+.+|.......+.........+.. ...+..+.+ -+....+....|.+...+..+.+
T Consensus 194 ~~i~~~af~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-p~~v~~i~~~aF~~c~~L~~i~l 272 (394)
T 4gt6_A 194 TRIGTNAFSECFALSTITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKI-PNGVARIETHAFDSCAYLASVKM 272 (394)
T ss_dssp CEECTTTTTTCTTCCEEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEEC-CTTEEEECTTTTTTCSSCCEEEC
T ss_pred cccccchhhhccccceecccccccccccceeecccccccccccccccccccceEEc-CCcceEcccceeeecccccEEec
Confidence 2223344556666666554433322211111100 011111111 01111223334444444444443
Q ss_pred CCCCcccccCCCCCCCCCCCcccccEEECCCCCCcccc-ccccCCCCCceeeccccccccccCCcc----cccceEeeec
Q 047161 600 GSSDSMALMLPSLSGLCSLTELNLKKLNLRRNNFVSLR-GTINHLPKFKHLKLDDCKRLRSLSELP----SDIKKVRVHG 674 (720)
Q Consensus 600 ~~~~~~~~~~~~l~~l~~L~~L~L~~L~Ls~n~l~~lp-~~i~~l~~L~~L~L~~c~~L~~lp~lp----~~L~~L~l~~ 674 (720)
... ........|.++.+| +.+.+. +.++.++ ..+.++.+|+.+.|..+ ++.++.-. .+|+.+.+..
T Consensus 273 p~~-~~~I~~~aF~~c~~L-----~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~~aF~~C~~L~~i~ip~ 343 (394)
T 4gt6_A 273 PDS-VVSIGTGAFMNCPAL-----QDIEFS-SRITELPESVFAGCISLKSIDIPEG--ITQILDDAFAGCEQLERIAIPS 343 (394)
T ss_dssp CTT-CCEECTTTTTTCTTC-----CEEECC-TTCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEECT
T ss_pred ccc-cceecCccccccccc-----ccccCC-CcccccCceeecCCCCcCEEEeCCc--ccEehHhHhhCCCCCCEEEECc
Confidence 321 112222235555555 344443 3455555 34566777777777542 44444311 4566666642
Q ss_pred Ccccccch-hhccCchhHhhhhhh
Q 047161 675 CTSLATIS-DALRSCNSATSRIFC 697 (720)
Q Consensus 675 c~~L~~lp-~~~~~~~~L~~l~~~ 697 (720)
+++.++ ..|.+|++|+.+.+.
T Consensus 344 --sv~~I~~~aF~~C~~L~~i~~~ 365 (394)
T 4gt6_A 344 --SVTKIPESAFSNCTALNNIEYS 365 (394)
T ss_dssp --TCCBCCGGGGTTCTTCCEEEES
T ss_pred --ccCEEhHhHhhCCCCCCEEEEC
Confidence 355555 456667777664443
No 178
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.49 E-value=1.8e-05 Score=72.74 Aligned_cols=85 Identities=14% Similarity=0.299 Sum_probs=63.7
Q ss_pred ccccEEECCCCCCcccc-ccccCCCCCceeeccccccccc-----cCCc---ccccceEeeecCcccccch-hhccCchh
Q 047161 621 LNLKKLNLRRNNFVSLR-GTINHLPKFKHLKLDDCKRLRS-----LSEL---PSDIKKVRVHGCTSLATIS-DALRSCNS 690 (720)
Q Consensus 621 L~L~~L~Ls~n~l~~lp-~~i~~l~~L~~L~L~~c~~L~~-----lp~l---p~~L~~L~l~~c~~L~~lp-~~~~~~~~ 690 (720)
..|+.||++++.++..- ..+..+++|++|+|++|..++. +..+ .++|++|++++|+.++.-. ..+.+|++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 35789999999876321 3567899999999999986543 4444 3579999999999887654 45677899
Q ss_pred HhhhhhhcccchhHHH
Q 047161 691 ATSRIFCINCPKLILN 706 (720)
Q Consensus 691 L~~l~~~~nc~~l~~~ 706 (720)
|+.| ...+||+++..
T Consensus 141 L~~L-~L~~c~~Itd~ 155 (176)
T 3e4g_A 141 LKYL-FLSDLPGVKEK 155 (176)
T ss_dssp CCEE-EEESCTTCCCH
T ss_pred CCEE-ECCCCCCCCch
Confidence 9994 44589987643
No 179
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.36 E-value=0.0093 Score=62.68 Aligned_cols=16 Identities=13% Similarity=0.191 Sum_probs=12.8
Q ss_pred chhccCCcceEEEecc
Q 047161 377 AFLKMTNLRLLKIHNL 392 (720)
Q Consensus 377 ~~~~l~~L~~L~l~~~ 392 (720)
+|.++.+|+.+.+.++
T Consensus 64 aF~~C~~L~~I~lp~~ 79 (379)
T 4h09_A 64 NFNSCYNMTKVTVAST 79 (379)
T ss_dssp TTTTCTTCCEEEECTT
T ss_pred HhhCCCCCCEEEeCCc
Confidence 7888888888888654
No 180
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.24 E-value=0.013 Score=62.09 Aligned_cols=190 Identities=12% Similarity=0.140 Sum_probs=93.4
Q ss_pred hccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCCCcccCcCcCCCCCCCEEeccCcccccCCccccCCcCCce
Q 047161 492 IELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMPESLGQMESLEELDVSGTVIRQPVPSIFFPSRILK 571 (720)
Q Consensus 492 i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~L~~n~l~~~~~~~~~~~~~L~ 571 (720)
+..+.+|+.+.+..+. ...-...+..+.+|+.+.+..+ +..+....-...+|+.+.+..+ +.......+..+.++.
T Consensus 133 F~~c~~L~~i~lp~~~-~~I~~~~F~~c~~L~~i~~~~~--~~~I~~~aF~~~~l~~i~ip~~-~~~i~~~af~~c~~l~ 208 (394)
T 4gt6_A 133 FHHCEELDTVTIPEGV-TSVADGMFSYCYSLHTVTLPDS--VTAIEERAFTGTALTQIHIPAK-VTRIGTNAFSECFALS 208 (394)
T ss_dssp TTTCTTCCEEECCTTC-CEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCCCSEEEECTT-CCEECTTTTTTCTTCC
T ss_pred hhhhccccccccccee-eeecccceecccccccccccce--eeEeccccccccceeEEEECCc-ccccccchhhhccccc
Confidence 5667777777776542 2333345667777777777653 3444433223356777776543 2222333344445666
Q ss_pred EEEeecCCCCCCCCCcccccc-------------cccccccCCCCcccccCCCCCCCCCCCcccccEEECCCCCCcccc-
Q 047161 572 VYLFVDTRDHRTSSSSWHLWF-------------PFSLMQKGSSDSMALMLPSLSGLCSLTELNLKKLNLRRNNFVSLR- 637 (720)
Q Consensus 572 ~L~l~~~~~~~~~~~~~~~l~-------------~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~L~Ls~n~l~~lp- 637 (720)
................+.... .+....+ .+.........|.++..| +.+.+.++ +..+.
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-p~~v~~i~~~aF~~c~~L-----~~i~lp~~-~~~I~~ 281 (394)
T 4gt6_A 209 TITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKI-PNGVARIETHAFDSCAYL-----ASVKMPDS-VVSIGT 281 (394)
T ss_dssp EEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEEC-CTTEEEECTTTTTTCSSC-----CEEECCTT-CCEECT
T ss_pred eecccccccccccceeecccccccccccccccccccceEEc-CCcceEcccceeeecccc-----cEEecccc-cceecC
Confidence 555433322222111111100 0000000 011111222336667766 55566544 33343
Q ss_pred ccccCCCCCceeeccccccccccCCcc----cccceEeeecCcccccch-hhccCchhHhhhhh
Q 047161 638 GTINHLPKFKHLKLDDCKRLRSLSELP----SDIKKVRVHGCTSLATIS-DALRSCNSATSRIF 696 (720)
Q Consensus 638 ~~i~~l~~L~~L~L~~c~~L~~lp~lp----~~L~~L~l~~c~~L~~lp-~~~~~~~~L~~l~~ 696 (720)
..+.++++|+.+.+.. .+..++.-. .+|+.+.+.+ .++.++ ..|.+|.+|+.+.+
T Consensus 282 ~aF~~c~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~C~~L~~i~i 341 (394)
T 4gt6_A 282 GAFMNCPALQDIEFSS--RITELPESVFAGCISLKSIDIPE--GITQILDDAFAGCEQLERIAI 341 (394)
T ss_dssp TTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEEE
T ss_pred cccccccccccccCCC--cccccCceeecCCCCcCEEEeCC--cccEehHhHhhCCCCCCEEEE
Confidence 4567788898888853 345554321 4566666643 355555 35666666665443
No 181
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.24 E-value=0.00024 Score=66.68 Aligned_cols=94 Identities=14% Similarity=0.110 Sum_probs=68.7
Q ss_pred CCCCCCceeeecCCCCCCCCCCCCcccCccchhhhHHHHhccCCCCcEEeccCCCCCcc----cCCCCCCCCCCCEEec-
Q 047161 453 FTGAPNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILVR----LPSTINGWKSLRTVNL- 527 (720)
Q Consensus 453 ~~~l~~L~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~----lp~~i~~l~~L~~L~L- 527 (720)
+...++|++|+|++|. +.. .....+...+...++|++|+|++|.+... +...+...++|++|+|
T Consensus 61 L~~~~~L~~L~Ls~n~-------i~~----~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~ 129 (185)
T 1io0_A 61 LKTNTYVKKFSIVGTR-------SND----PVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRID 129 (185)
T ss_dssp HTTCCSCCEEECTTSC-------CCH----HHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECC
T ss_pred HHhCCCcCEEECcCCC-------CCh----HHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEec
Confidence 4567899999999987 221 11223444477788999999999985432 5567778899999999
Q ss_pred -cCCCCCcc----cCcCcCCCCCCCEEeccCcccc
Q 047161 528 -SRCSKLEN----MPESLGQMESLEELDVSGTVIR 557 (720)
Q Consensus 528 -~~~~~l~~----lp~~~~~L~~L~~L~L~~n~l~ 557 (720)
++|.+... +...+...++|++|++++|.+.
T Consensus 130 ~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 130 NQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp CCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred CCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 88876543 3345566789999999999875
No 182
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.23 E-value=9.6e-05 Score=67.96 Aligned_cols=85 Identities=13% Similarity=0.169 Sum_probs=48.9
Q ss_pred CCCceeeecCCCCCCCCCCCCcccCccchhhhHHHHhccCCCCcEEeccCCCCCc-ccCCCCCCC----CCCCEEeccCC
Q 047161 456 APNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILV-RLPSTINGW----KSLRTVNLSRC 530 (720)
Q Consensus 456 l~~L~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~-~lp~~i~~l----~~L~~L~L~~~ 530 (720)
-.+|+.||+++|. + +...-.. +..+++|+.|+|++|..++ .--..++.+ ++|++|+|++|
T Consensus 60 ~~~L~~LDLs~~~-I------td~GL~~--------L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C 124 (176)
T 3e4g_A 60 KYKIQAIDATDSC-I------MSIGFDH--------MEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISC 124 (176)
T ss_dssp CCCEEEEEEESCC-C------CGGGGGG--------GTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESC
T ss_pred CceEeEEeCcCCC-c------cHHHHHH--------hcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCC
Confidence 3467888888876 2 2211110 5567788888888876332 111223333 36788888887
Q ss_pred CCCccc-CcCcCCCCCCCEEeccCcc
Q 047161 531 SKLENM-PESLGQMESLEELDVSGTV 555 (720)
Q Consensus 531 ~~l~~l-p~~~~~L~~L~~L~L~~n~ 555 (720)
..++.- -..+.++++|++|++++|.
T Consensus 125 ~~ITD~Gl~~L~~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 125 GNVTDKGIIALHHFRNLKYLFLSDLP 150 (176)
T ss_dssp TTCCHHHHHHGGGCTTCCEEEEESCT
T ss_pred CcCCHHHHHHHhcCCCCCEEECCCCC
Confidence 644321 1235567777777777774
No 183
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=96.79 E-value=0.012 Score=60.26 Aligned_cols=173 Identities=16% Similarity=0.074 Sum_probs=100.8
Q ss_pred CCCCccccchhHHHHHHhhhc---cCCCeEEEEEecCCCccccchhcHHHHHHHHHHhhhhcccceec-cchhhHHHHHH
Q 047161 126 ILDDLVEMNSRLKKLRLLLDA---ESRDVRMIGICGMGGVELSEKDGLIALQKQLLSKTLMEIDIEIR-NDFDGIKMIKR 201 (720)
Q Consensus 126 ~~~~~vG~~~~~~~i~~~L~~---~~~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~~~~~~~-~~~~~~~~l~~ 201 (720)
..+++||++..++.+...+.. .......|-|+|..|++.+ .+.+.+.... ........ ........+..
T Consensus 10 ~~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT------~la~~i~~~~-~~~~~~~~~~~~~~~~~l~~ 82 (324)
T 1hqc_A 10 TLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKT------TLAHVIAHEL-GVNLRVTSGPAIEKPGDLAA 82 (324)
T ss_dssp STTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCH------HHHHHHHHHH-TCCEEEECTTTCCSHHHHHH
T ss_pred cHHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHH------HHHHHHHHHh-CCCEEEEeccccCChHHHHH
Confidence 346799999999998887752 1223456789999999444 4444444442 21111110 11112334555
Q ss_pred HHhc---CCeEEEEecCCcH--HHHHHHhccCCCC------------------CCCCeEEEEcCChhhh-hhc--cccce
Q 047161 202 ELRR---RNVLVVIDDAVHI--RQLNRLAGKHSWF------------------GSGSRIIIPTRDEHLL-RTL--RVDGV 255 (720)
Q Consensus 202 ~l~~---kr~LlVLDdv~~~--~~~~~l~~~~~~~------------------~~gsrIivTTR~~~v~-~~~--~~~~~ 255 (720)
.+.+ +..+|+|||+... ...+.+...+... .++.++|.||...... ... .....
T Consensus 83 ~l~~~~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~~~~~~~l~~R~~~~ 162 (324)
T 1hqc_A 83 ILANSLEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLSRFGIV 162 (324)
T ss_dssp HHTTTCCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESCCSSCSCSTTTTCSCE
T ss_pred HHHHhccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCCCcccCCHHHHhcccEE
Confidence 5544 6789999999763 2333333222111 0235677766643221 111 22357
Q ss_pred EecCCCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHhCCCchHHHHhhh
Q 047161 256 YKVEKLDDDEALELFNKRAFDGQPSKDYVELIKRIVKYADGLPFALETLGS 306 (720)
Q Consensus 256 ~~l~~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~i~~~c~glPLai~~~g~ 306 (720)
+.+.+++.+|..+++.+.+......- -.+....++++++|.|-.+..+..
T Consensus 163 i~l~~~~~~e~~~~l~~~~~~~~~~~-~~~~~~~l~~~~~G~~r~l~~~l~ 212 (324)
T 1hqc_A 163 EHLEYYTPEELAQGVMRDARLLGVRI-TEEAALEIGRRSRGTMRVAKRLFR 212 (324)
T ss_dssp EECCCCCHHHHHHHHHHHHHTTTCCC-CHHHHHHHHHHSCSCHHHHHHHHH
T ss_pred EecCCCCHHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHccCCHHHHHHHHH
Confidence 89999999999999988775431111 124567888999999987766543
No 184
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=96.72 E-value=0.037 Score=56.26 Aligned_cols=169 Identities=12% Similarity=0.112 Sum_probs=102.8
Q ss_pred CCCCccccchhHHHHHHhhhccCCCeEEEEEecCCCccccchhcHHHHHHHHHHhhhhcc----ccee-----ccchhhH
Q 047161 126 ILDDLVEMNSRLKKLRLLLDAESRDVRMIGICGMGGVELSEKDGLIALQKQLLSKTLMEI----DIEI-----RNDFDGI 196 (720)
Q Consensus 126 ~~~~~vG~~~~~~~i~~~L~~~~~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~~----~~~~-----~~~~~~~ 196 (720)
..++++|++..++.+.+.+..+ ....+-|+|..|++. ..+.+.+...+.... .... ...+...
T Consensus 15 ~~~~~~g~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GK------t~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 86 (319)
T 2chq_A 15 TLDEVVGQDEVIQRLKGYVERK--NIPHLLFSGPPGTGK------TATAIALARDLFGENWRDNFIEMNASDERGIDVVR 86 (319)
T ss_dssp SGGGSCSCHHHHHHHHTTTTTT--CCCCEEEESSSSSSH------HHHHHHHHHHHHTTCHHHHCEEEETTSTTCTTTSS
T ss_pred CHHHHhCCHHHHHHHHHHHhCC--CCCeEEEECcCCcCH------HHHHHHHHHHhcCCcccCCeEEEeCccccChHHHH
Confidence 3456999999999999888543 333478999999843 333444443321100 0011 1112222
Q ss_pred HHHHHHH------hcCCeEEEEecCCcH--HHHHHHhccCCCCCCCCeEEEEcCChh-hhhhc-cccceEecCCCCHHHH
Q 047161 197 KMIKREL------RRRNVLVVIDDAVHI--RQLNRLAGKHSWFGSGSRIIIPTRDEH-LLRTL-RVDGVYKVEKLDDDEA 266 (720)
Q Consensus 197 ~~l~~~l------~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIivTTR~~~-v~~~~-~~~~~~~l~~L~~~~s 266 (720)
+.+.... .+++-++|+||++.. +..+.+...+.....+.++|+||.... +.... .--..+++.+++.++.
T Consensus 87 ~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~i~~~~~~~~~~ 166 (319)
T 2chq_A 87 HKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAM 166 (319)
T ss_dssp HHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHTTCEEEECCCCCHHHH
T ss_pred HHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHhhCeEEEecCCCHHHH
Confidence 3333332 256889999999753 456777777766667788888886543 22111 1123789999999999
Q ss_pred HHHHHHHhcCCCCCchHHHHHHHHHHHhCCCchHHHH
Q 047161 267 LELFNKRAFDGQPSKDYVELIKRIVKYADGLPFALET 303 (720)
Q Consensus 267 ~~Lf~~~af~~~~~~~~~~~~~~i~~~c~glPLai~~ 303 (720)
.+++...+-.....-+ .+....+++.++|.+..+..
T Consensus 167 ~~~l~~~~~~~~~~i~-~~~l~~l~~~~~G~~r~~~~ 202 (319)
T 2chq_A 167 KKRLLEICEKEGVKIT-EDGLEALIYISGGDFRKAIN 202 (319)
T ss_dssp HHHHHHHHHTTCCCBC-HHHHHHHHHTTTTCHHHHHH
T ss_pred HHHHHHHHHHcCCCCC-HHHHHHHHHHcCCCHHHHHH
Confidence 9998877654311111 23456677888998876543
No 185
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.66 E-value=0.037 Score=55.42 Aligned_cols=162 Identities=19% Similarity=0.241 Sum_probs=93.2
Q ss_pred CCCCCccccchhHHHHHHhhhcc-----------CCCeEEEEEecCCCccccchhcHHHHHHHHHHhhhhcccceec---
Q 047161 125 GILDDLVEMNSRLKKLRLLLDAE-----------SRDVRMIGICGMGGVELSEKDGLIALQKQLLSKTLMEIDIEIR--- 190 (720)
Q Consensus 125 ~~~~~~vG~~~~~~~i~~~L~~~-----------~~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~~~~~~~--- 190 (720)
...++++|++..++++.+.+... ....+-+-|+|..|+ +...+.+.+...+ ........
T Consensus 14 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~Gt------GKT~la~~la~~~-~~~~~~v~~~~ 86 (285)
T 3h4m_A 14 VRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGT------GKTLLAKAVATET-NATFIRVVGSE 86 (285)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSS------SHHHHHHHHHHHT-TCEEEEEEGGG
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCC------cHHHHHHHHHHHh-CCCEEEEehHH
Confidence 34567999999999998877421 133455889999999 4445555555542 21111110
Q ss_pred ----cchhhHHHH----HHHHhcCCeEEEEecCCcH----------------HHHHHHhccCCC--CCCCCeEEEEcCCh
Q 047161 191 ----NDFDGIKMI----KRELRRRNVLVVIDDAVHI----------------RQLNRLAGKHSW--FGSGSRIIIPTRDE 244 (720)
Q Consensus 191 ----~~~~~~~~l----~~~l~~kr~LlVLDdv~~~----------------~~~~~l~~~~~~--~~~gsrIivTTR~~ 244 (720)
........+ ......+..+|++||++.. ..+..+...+.. ...+..||.||...
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~ 166 (285)
T 3h4m_A 87 LVKKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRP 166 (285)
T ss_dssp GCCCSTTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCG
T ss_pred HHHhccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCc
Confidence 001111222 2223456689999999764 113333332221 23456788888754
Q ss_pred hhhh-----hccccceEecCCCCHHHHHHHHHHHhcCC--CCCchHHHHHHHHHHHhCCC
Q 047161 245 HLLR-----TLRVDGVYKVEKLDDDEALELFNKRAFDG--QPSKDYVELIKRIVKYADGL 297 (720)
Q Consensus 245 ~v~~-----~~~~~~~~~l~~L~~~~s~~Lf~~~af~~--~~~~~~~~~~~~i~~~c~gl 297 (720)
+... ....+..+.++..+.++..+++..++... ....++ ..+++.+.|.
T Consensus 167 ~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~----~~l~~~~~g~ 222 (285)
T 3h4m_A 167 DILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVNL----EEIAKMTEGC 222 (285)
T ss_dssp GGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCH----HHHHHHCTTC
T ss_pred hhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcCCH----HHHHHHcCCC
Confidence 3322 22345589999999999999999887554 223334 3455566663
No 186
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=96.51 E-value=0.038 Score=57.70 Aligned_cols=171 Identities=16% Similarity=0.149 Sum_probs=100.4
Q ss_pred CCCccccchhHHHHHHhhhccCCCeEEEEEecCCCccccchhcHHHHHHHHHHhhhhcc---------------------
Q 047161 127 LDDLVEMNSRLKKLRLLLDAESRDVRMIGICGMGGVELSEKDGLIALQKQLLSKTLMEI--------------------- 185 (720)
Q Consensus 127 ~~~~vG~~~~~~~i~~~L~~~~~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~~--------------------- 185 (720)
.+++||++..++.+...+..+. ....+-|+|..|++. ..+.+.+...+....
T Consensus 15 ~~~~vg~~~~~~~L~~~l~~~~-~~~~~ll~G~~G~GK------T~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (373)
T 1jr3_A 15 FADVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGK------TSIARLLAKGLNCETGITATPCGVCDNCREIEQGRF 87 (373)
T ss_dssp TTTSCSCHHHHHHHHHHHHHTC-CCSEEEEESCTTSSH------HHHHHHHHHHHSCTTCSCSSCCSSSHHHHHHHTSCC
T ss_pred hhhccCcHHHHHHHHHHHHhCC-CCeEEEEECCCCCCH------HHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhccCC
Confidence 3569999999999988885432 223677999999943 333333333321100
Q ss_pred -c-ceec----cchhhHHHHHHHHh-----cCCeEEEEecCCc--HHHHHHHhccCCCCCCCCeEEEEcCChh-hhhhc-
Q 047161 186 -D-IEIR----NDFDGIKMIKRELR-----RRNVLVVIDDAVH--IRQLNRLAGKHSWFGSGSRIIIPTRDEH-LLRTL- 250 (720)
Q Consensus 186 -~-~~~~----~~~~~~~~l~~~l~-----~kr~LlVLDdv~~--~~~~~~l~~~~~~~~~gsrIivTTR~~~-v~~~~- 250 (720)
+ .... ...+....+.+.+. +++.++|+||++. ...++.+...+.....+..+|++|.... +....
T Consensus 88 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~ 167 (373)
T 1jr3_A 88 VDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTIL 167 (373)
T ss_dssp SSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSCHHHH
T ss_pred CceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCcHHHH
Confidence 0 0000 00112233333332 5678999999975 3446666655554445677777776433 22211
Q ss_pred cccceEecCCCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHhCCCchHHHHhh
Q 047161 251 RVDGVYKVEKLDDDEALELFNKRAFDGQPSKDYVELIKRIVKYADGLPFALETLG 305 (720)
Q Consensus 251 ~~~~~~~l~~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~i~~~c~glPLai~~~g 305 (720)
.-...+++.+++.++..+++.+.+-.....-+ .+....+++.++|.|..+..+.
T Consensus 168 sr~~~i~~~~l~~~~~~~~l~~~~~~~~~~~~-~~a~~~l~~~~~G~~r~~~~~l 221 (373)
T 1jr3_A 168 SRCLQFHLKALDVEQIRHQLEHILNEEHIAHE-PRALQLLARAAEGSLRDALSLT 221 (373)
T ss_dssp TTSEEEECCCCCHHHHHHHHHHHHHHHTCCBC-HHHHHHHHHHSSSCHHHHHHHH
T ss_pred hheeEeeCCCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHCCCCHHHHHHHH
Confidence 11247899999999999998876532111111 2345678899999998776543
No 187
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=96.24 E-value=0.17 Score=52.39 Aligned_cols=191 Identities=15% Similarity=0.105 Sum_probs=104.7
Q ss_pred hHHHHHHHHHHhhhhccCCCccCCCCCccccchhHHHHHHhhhc----------cCCCeEEEEEecCCCccccchhcHHH
Q 047161 103 HEVEFIQEIVKEISRKKGPRTLGILDDLVEMNSRLKKLRLLLDA----------ESRDVRMIGICGMGGVELSEKDGLIA 172 (720)
Q Consensus 103 ~e~~~i~~i~~~i~~~~~~~~~~~~~~~vG~~~~~~~i~~~L~~----------~~~~~~vi~I~G~gGi~vs~~~~~~~ 172 (720)
.+...++.+..++..+.++ ...++++|.+..++.+.+.+.. .....+-|-|+|..|+ +...
T Consensus 62 ~~~~~~~~i~~~i~~~~~~---~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGt------GKT~ 132 (357)
T 3d8b_A 62 LEPKMIELIMNEIMDHGPP---VNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGT------GKTL 132 (357)
T ss_dssp SCHHHHHHHHHHTBCCSCC---CCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTS------SHHH
T ss_pred CChHHHHHHHhhcccCCCC---CCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCC------CHHH
Confidence 4556677777777555433 3346799999999999877642 1123456889999998 4445
Q ss_pred HHHHHHHhhhhcccceec--c-----chhhHHHHHH---HH-hcCCeEEEEecCCcH-------------HHHHHHhccC
Q 047161 173 LQKQLLSKTLMEIDIEIR--N-----DFDGIKMIKR---EL-RRRNVLVVIDDAVHI-------------RQLNRLAGKH 228 (720)
Q Consensus 173 ~~~~il~~~~~~~~~~~~--~-----~~~~~~~l~~---~l-~~kr~LlVLDdv~~~-------------~~~~~l~~~~ 228 (720)
+.+.+.... +....... + .......++. .. ..+..+|+||+++.. .....+...+
T Consensus 133 la~aia~~~-~~~~~~i~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l 211 (357)
T 3d8b_A 133 IGKCIASQS-GATFFSISASSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQL 211 (357)
T ss_dssp HHHHHHHHT-TCEEEEEEGGGGCCSSTTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHH
T ss_pred HHHHHHHHc-CCeEEEEehHHhhccccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHH
Confidence 555555542 21111110 0 0111122222 22 356789999999543 1122333222
Q ss_pred C----CCCCCCeEEEEcCChhhh-hh--ccccceEecCCCCHHHHHHHHHHHhcCC-CCCchHHHHHHHHHHHhCCC-ch
Q 047161 229 S----WFGSGSRIIIPTRDEHLL-RT--LRVDGVYKVEKLDDDEALELFNKRAFDG-QPSKDYVELIKRIVKYADGL-PF 299 (720)
Q Consensus 229 ~----~~~~gsrIivTTR~~~v~-~~--~~~~~~~~l~~L~~~~s~~Lf~~~af~~-~~~~~~~~~~~~i~~~c~gl-PL 299 (720)
. ....+-.||.||...... .. -.....+.+...+.++..+++...+-.. .... .+....+++.+.|. +-
T Consensus 212 ~~~~~~~~~~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~--~~~l~~la~~t~G~s~~ 289 (357)
T 3d8b_A 212 DGATTSSEDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCCLS--EEEIEQIVQQSDAFSGA 289 (357)
T ss_dssp HC----CCCCEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBCCC--HHHHHHHHHHTTTCCHH
T ss_pred hcccccCCCCEEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCCcc--HHHHHHHHHHcCCCCHH
Confidence 2 112344566667543221 11 1334577899999999999988776432 1111 23456678888884 44
Q ss_pred HHHHhh
Q 047161 300 ALETLG 305 (720)
Q Consensus 300 ai~~~g 305 (720)
++..+.
T Consensus 290 dl~~l~ 295 (357)
T 3d8b_A 290 DMTQLC 295 (357)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 455443
No 188
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.10 E-value=0.19 Score=49.68 Aligned_cols=184 Identities=15% Similarity=0.082 Sum_probs=96.5
Q ss_pred CCccccchhHHHHHHh-------hhc-cCCCeEEEEEecCCCccccchhcHHHHHHHHHHhhhhcccceeccc-------
Q 047161 128 DDLVEMNSRLKKLRLL-------LDA-ESRDVRMIGICGMGGVELSEKDGLIALQKQLLSKTLMEIDIEIRND------- 192 (720)
Q Consensus 128 ~~~vG~~~~~~~i~~~-------L~~-~~~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~~~~~~~~~------- 192 (720)
..++|.+..++++... +.. ......-+-|+|..|+ +...+.+.+... .+.........
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~Gt------GKT~la~~ia~~-~~~~~~~i~~~~~~~g~~ 105 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHS------GKTALAAKIAEE-SNFPFIKICSPDKMIGFS 105 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTS------SHHHHHHHHHHH-HTCSEEEEECGGGCTTCC
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCC------cHHHHHHHHHHH-hCCCEEEEeCHHHhcCCc
Confidence 4688888877776652 211 2345677889999999 444444444444 22211111111
Q ss_pred -hhhHHHHHHH----HhcCCeEEEEecCCcH------------HHHHHHhccCCC---CCCCCeEEEEcCChhhhhhc--
Q 047161 193 -FDGIKMIKRE----LRRRNVLVVIDDAVHI------------RQLNRLAGKHSW---FGSGSRIIIPTRDEHLLRTL-- 250 (720)
Q Consensus 193 -~~~~~~l~~~----l~~kr~LlVLDdv~~~------------~~~~~l~~~~~~---~~~gsrIivTTR~~~v~~~~-- 250 (720)
......++.. ...+..+|++||++.. ...+.+...+.. .+....||.||.........
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~~~~l 185 (272)
T 1d2n_A 106 ETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEM 185 (272)
T ss_dssp HHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhcchhhh
Confidence 1111223332 2356789999998754 123333333322 23344577788877554432
Q ss_pred --cccceEecCCCCH-HHHHHHHHHHhcCCCCCchHHHHHHHHHHHhCCC------chHHHHhhhhccCCCHHHHHHHHh
Q 047161 251 --RVDGVYKVEKLDD-DEALELFNKRAFDGQPSKDYVELIKRIVKYADGL------PFALETLGSVLFGRSVDGWRSTLE 321 (720)
Q Consensus 251 --~~~~~~~l~~L~~-~~s~~Lf~~~af~~~~~~~~~~~~~~i~~~c~gl------PLai~~~g~~l~~k~~~~W~~~l~ 321 (720)
.....+++++++. ++-.+++.+.. .. . .+....+++.+.|. +-++..+-..-...+...|+.++.
T Consensus 186 ~~rf~~~i~~p~l~~r~~i~~i~~~~~--~~-~---~~~~~~l~~~~~g~~~~g~ir~l~~~l~~a~~~~~~~~~~~~~~ 259 (272)
T 1d2n_A 186 LNAFSTTIHVPNIATGEQLLEALELLG--NF-K---DKERTTIAQQVKGKKVWIGIKKLLMLIEMSLQMDPEYRVRKFLA 259 (272)
T ss_dssp TTTSSEEEECCCEEEHHHHHHHHHHHT--CS-C---HHHHHHHHHHHTTSEEEECHHHHHHHHHHHTTSCGGGHHHHHHH
T ss_pred hcccceEEcCCCccHHHHHHHHHHhcC--CC-C---HHHHHHHHHHhcCCCccccHHHHHHHHHHHhhhchHHHHHHHHH
Confidence 1245788999988 66666655421 11 1 23456777888774 333333322222233455666665
Q ss_pred hhh
Q 047161 322 RLN 324 (720)
Q Consensus 322 ~l~ 324 (720)
.+.
T Consensus 260 ~l~ 262 (272)
T 1d2n_A 260 LLR 262 (272)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 189
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.01 E-value=0.06 Score=56.35 Aligned_cols=81 Identities=12% Similarity=0.145 Sum_probs=47.5
Q ss_pred hccCCCCcEEeccCCCCCcccCCCCCCCCCCCEEeccCCCCCcccC-cCcCCCCCCCEEeccCcccccCCccccCCcCCc
Q 047161 492 IELLTGLVFLNLNDCKILVRLPSTINGWKSLRTVNLSRCSKLENMP-ESLGQMESLEELDVSGTVIRQPVPSIFFPSRIL 570 (720)
Q Consensus 492 i~~l~~L~~L~Ls~n~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp-~~~~~L~~L~~L~L~~n~l~~~~~~~~~~~~~L 570 (720)
+..+..|+.+.+..+ ....-...+.++.+|+.+.+..+ +..++ ..|..+.+|+.+.+.++.+..+....+..+.+|
T Consensus 236 f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~--i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L 312 (379)
T 4h09_A 236 FYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK--VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKL 312 (379)
T ss_dssp TTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC--CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTC
T ss_pred ccCCccceEEEcCCC-ccEeCccccceeehhcccccccc--ceeccccccccccccccccccccccceehhhhhcCCCCC
Confidence 455666666666554 12222344556667777766542 33333 346666777777776666666666666666666
Q ss_pred eEEEe
Q 047161 571 KVYLF 575 (720)
Q Consensus 571 ~~L~l 575 (720)
+.+.+
T Consensus 313 ~~i~l 317 (379)
T 4h09_A 313 SSVTL 317 (379)
T ss_dssp CEEEC
T ss_pred CEEEc
Confidence 66665
No 190
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.93 E-value=0.12 Score=56.60 Aligned_cols=167 Identities=13% Similarity=0.139 Sum_probs=92.4
Q ss_pred CCCccccchhHHHHHHhhhccC---------------CCeEEEEEecCCCccccchhcHHHHHHHHHHhhhhcccceecc
Q 047161 127 LDDLVEMNSRLKKLRLLLDAES---------------RDVRMIGICGMGGVELSEKDGLIALQKQLLSKTLMEIDIEIRN 191 (720)
Q Consensus 127 ~~~~vG~~~~~~~i~~~L~~~~---------------~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~~~~~~~~ 191 (720)
.++++|++..++++.+++.... +..+.+-|+|..|+ +...+.+.+...+ +..-.....
T Consensus 38 ~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGt------GKTtla~~la~~l-~~~~i~in~ 110 (516)
T 1sxj_A 38 LQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGI------GKTTAAHLVAQEL-GYDILEQNA 110 (516)
T ss_dssp GGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTS------SHHHHHHHHHHHT-TCEEEEECT
T ss_pred HHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCC------CHHHHHHHHHHHc-CCCEEEEeC
Confidence 4679999999999999885310 13468889999999 3444444444442 211111100
Q ss_pred ch-hhHHHHHHH----------------------HhcCCeEEEEecCCcHH-----HHHHHhccCCCCCCCCeEEEEcCC
Q 047161 192 DF-DGIKMIKRE----------------------LRRRNVLVVIDDAVHIR-----QLNRLAGKHSWFGSGSRIIIPTRD 243 (720)
Q Consensus 192 ~~-~~~~~l~~~----------------------l~~kr~LlVLDdv~~~~-----~~~~l~~~~~~~~~gsrIivTTR~ 243 (720)
.+ .....+... ..+++.+|++|+|+... .+..+...+.. .+.+||++|.+
T Consensus 111 s~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~--~~~~iIli~~~ 188 (516)
T 1sxj_A 111 SDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK--TSTPLILICNE 188 (516)
T ss_dssp TSCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHH--CSSCEEEEESC
T ss_pred CCcchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHh--cCCCEEEEEcC
Confidence 00 000011111 12567899999997531 12333322221 23456666654
Q ss_pred hh---hhhhccccceEecCCCCHHHHHHHHHHHhcCC--CCCchHHHHHHHHHHHhCCC-chHHHHhh
Q 047161 244 EH---LLRTLRVDGVYKVEKLDDDEALELFNKRAFDG--QPSKDYVELIKRIVKYADGL-PFALETLG 305 (720)
Q Consensus 244 ~~---v~~~~~~~~~~~l~~L~~~~s~~Lf~~~af~~--~~~~~~~~~~~~i~~~c~gl-PLai~~~g 305 (720)
.. +.........+++++++.++..+.+.+.+... ...+ +....+++.++|. +-|+..+.
T Consensus 189 ~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~---~~l~~la~~s~GdiR~~i~~L~ 253 (516)
T 1sxj_A 189 RNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLDP---NVIDRLIQTTRGDIRQVINLLS 253 (516)
T ss_dssp TTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCT---THHHHHHHHTTTCHHHHHHHHT
T ss_pred CCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHcCCcHHHHHHHHH
Confidence 32 22211223478999999999999988776532 2222 2356778889984 45555543
No 191
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=95.87 E-value=0.34 Score=47.45 Aligned_cols=166 Identities=16% Similarity=0.174 Sum_probs=89.5
Q ss_pred CCCccccchhHHHHHHhhhc--c--------CCCeEEEEEecCCCccccchhcHHHHHHHHHHhhhhcccceec--c---
Q 047161 127 LDDLVEMNSRLKKLRLLLDA--E--------SRDVRMIGICGMGGVELSEKDGLIALQKQLLSKTLMEIDIEIR--N--- 191 (720)
Q Consensus 127 ~~~~vG~~~~~~~i~~~L~~--~--------~~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~~~~~~~--~--- 191 (720)
.++++|.+..++.+.+++.. . ....+-|-|+|..|. +...+.+.+...+ ........ +
T Consensus 5 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~Gt------GKT~la~~la~~~-~~~~~~~~~~~~~~ 77 (262)
T 2qz4_A 5 FKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGC------GKTLLAKAVATEA-QVPFLAMAGAEFVE 77 (262)
T ss_dssp TTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTS------SHHHHHHHHHHHH-TCCEEEEETTTTSS
T ss_pred HHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCC------CHHHHHHHHHHHh-CCCEEEechHHHHh
Confidence 45789999988888766531 1 122345779999999 4444455554442 21111110 0
Q ss_pred ------chhhHHHHHHHHhcCCeEEEEecCCcHH-----------------HHHHHhccCCCC--CCCCeEEEEcCChhh
Q 047161 192 ------DFDGIKMIKRELRRRNVLVVIDDAVHIR-----------------QLNRLAGKHSWF--GSGSRIIIPTRDEHL 246 (720)
Q Consensus 192 ------~~~~~~~l~~~l~~kr~LlVLDdv~~~~-----------------~~~~l~~~~~~~--~~gsrIivTTR~~~v 246 (720)
.......+.........+|++||++... .+..+...+... ..+-.||.||.....
T Consensus 78 ~~~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~~ 157 (262)
T 2qz4_A 78 VIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADI 157 (262)
T ss_dssp SSTTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEEEEESCGGG
T ss_pred hccChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCChhh
Confidence 0111122222233467899999998641 122333322221 234567777765443
Q ss_pred hhh-c----cccceEecCCCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHhCCCch
Q 047161 247 LRT-L----RVDGVYKVEKLDDDEALELFNKRAFDGQPSKDYVELIKRIVKYADGLPF 299 (720)
Q Consensus 247 ~~~-~----~~~~~~~l~~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~i~~~c~glPL 299 (720)
... . ..+..+.++..+.++-.+++..++-..............+++.+.|.+-
T Consensus 158 ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~ 215 (262)
T 2qz4_A 158 LDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSG 215 (262)
T ss_dssp GGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCH
T ss_pred cCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCH
Confidence 211 1 3446788999999999999988764432222222234677788888754
No 192
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.24 E-value=0.45 Score=48.90 Aligned_cols=167 Identities=14% Similarity=0.125 Sum_probs=95.4
Q ss_pred CCCccccchhHHHHHHhhhccCCCeEEEEEecCCCccccchhcHHHHHHHHHHhhhhc-----cccee--c---cchhhH
Q 047161 127 LDDLVEMNSRLKKLRLLLDAESRDVRMIGICGMGGVELSEKDGLIALQKQLLSKTLME-----IDIEI--R---NDFDGI 196 (720)
Q Consensus 127 ~~~~vG~~~~~~~i~~~L~~~~~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~-----~~~~~--~---~~~~~~ 196 (720)
..+++|.+..++.+...+..+. ...+.|+|..|++.+ .+.+.+...+... .-... . ......
T Consensus 36 ~~~i~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT------~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (353)
T 1sxj_D 36 LDEVTAQDHAVTVLKKTLKSAN--LPHMLFYGPPGTGKT------STILALTKELYGPDLMKSRILELNASDERGISIVR 107 (353)
T ss_dssp TTTCCSCCTTHHHHHHHTTCTT--CCCEEEECSTTSSHH------HHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHHHT
T ss_pred HHHhhCCHHHHHHHHHHHhcCC--CCEEEEECCCCCCHH------HHHHHHHHHhCCCcccccceEEEccccccchHHHH
Confidence 4679999999999998885432 223789999998433 3333333332110 00111 1 111111
Q ss_pred HHHHHHHh----------------cCCeEEEEecCCcH--HHHHHHhccCCCCCCCCeEEEEcCChh-hhhhcc-ccceE
Q 047161 197 KMIKRELR----------------RRNVLVVIDDAVHI--RQLNRLAGKHSWFGSGSRIIIPTRDEH-LLRTLR-VDGVY 256 (720)
Q Consensus 197 ~~l~~~l~----------------~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIivTTR~~~-v~~~~~-~~~~~ 256 (720)
+.+..... +++-+|++|+++.. ...+.+...+.......++|++|.... +..... --..+
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR~~~i 187 (353)
T 1sxj_D 108 EKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQCSKF 187 (353)
T ss_dssp THHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHSEEE
T ss_pred HHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhccCceE
Confidence 11222211 24458999998753 334555544443445667777775432 222111 11378
Q ss_pred ecCCCCHHHHHHHHHHHhcCC--CCCchHHHHHHHHHHHhCCCchHHHHh
Q 047161 257 KVEKLDDDEALELFNKRAFDG--QPSKDYVELIKRIVKYADGLPFALETL 304 (720)
Q Consensus 257 ~l~~L~~~~s~~Lf~~~af~~--~~~~~~~~~~~~i~~~c~glPLai~~~ 304 (720)
++.+++.++..+.+...+-.. ..+ .+....+++.++|.|-.+..+
T Consensus 188 ~~~~~~~~~~~~~l~~~~~~~~~~i~---~~~l~~l~~~~~G~~r~~~~~ 234 (353)
T 1sxj_D 188 RFKALDASNAIDRLRFISEQENVKCD---DGVLERILDISAGDLRRGITL 234 (353)
T ss_dssp ECCCCCHHHHHHHHHHHHHTTTCCCC---HHHHHHHHHHTSSCHHHHHHH
T ss_pred EeCCCCHHHHHHHHHHHHHHhCCCCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 899999999999988876433 222 345678889999999765443
No 193
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.16 E-value=0.16 Score=52.55 Aligned_cols=98 Identities=13% Similarity=0.169 Sum_probs=58.6
Q ss_pred CCeEEEEecCCcH--HHHHHHhccCCCCCCCCeEEEEcCCh-hhhhhcc-ccceEecCCCCHHHHHHHHHHHhcCCCCCc
Q 047161 206 RNVLVVIDDAVHI--RQLNRLAGKHSWFGSGSRIIIPTRDE-HLLRTLR-VDGVYKVEKLDDDEALELFNKRAFDGQPSK 281 (720)
Q Consensus 206 kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIivTTR~~-~v~~~~~-~~~~~~l~~L~~~~s~~Lf~~~af~~~~~~ 281 (720)
++-++|||++... ...+.+...+.....+.++|+||.+. .+..... --..+++++++.++..+.+.+.+-.....-
T Consensus 134 ~~~vlilDE~~~L~~~~~~~L~~~le~~~~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 213 (354)
T 1sxj_E 134 RYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQL 213 (354)
T ss_dssp CCEEEEEECTTSSCHHHHHHHHHHHHHSTTTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCEE
T ss_pred CCeEEEEeCccccCHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCCC
Confidence 4558999999753 23344444443334567788777653 2322211 115789999999999999887764221100
Q ss_pred hHHHHHHHHHHHhCCCchHHHH
Q 047161 282 DYVELIKRIVKYADGLPFALET 303 (720)
Q Consensus 282 ~~~~~~~~i~~~c~glPLai~~ 303 (720)
+-.+....+++.++|.+-.+..
T Consensus 214 ~~~~~l~~i~~~~~G~~r~a~~ 235 (354)
T 1sxj_E 214 ETKDILKRIAQASNGNLRVSLL 235 (354)
T ss_dssp CCSHHHHHHHHHHTTCHHHHHH
T ss_pred CcHHHHHHHHHHcCCCHHHHHH
Confidence 0013456788889998865443
No 194
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=94.95 E-value=0.052 Score=50.20 Aligned_cols=132 Identities=15% Similarity=0.149 Sum_probs=71.5
Q ss_pred CCCccccchhHHHHHHhhhccCCCeEEEEEecCCCccccchhcHHHHHHHHHHhhhh--------cccceecc-------
Q 047161 127 LDDLVEMNSRLKKLRLLLDAESRDVRMIGICGMGGVELSEKDGLIALQKQLLSKTLM--------EIDIEIRN------- 191 (720)
Q Consensus 127 ~~~~vG~~~~~~~i~~~L~~~~~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~--------~~~~~~~~------- 191 (720)
.+.++|+++.++++...+.. ...+.+-|+|..|++ ...+.+.+...+.. ....-..+
T Consensus 21 ~~~~~g~~~~~~~l~~~l~~--~~~~~~ll~G~~G~G------KT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (195)
T 1jbk_A 21 LDPVIGRDEEIRRTIQVLQR--RTKNNPVLIGEPGVG------KTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAG 92 (195)
T ss_dssp SCCCCSCHHHHHHHHHHHTS--SSSCEEEEECCTTSC------HHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHHHHTT
T ss_pred ccccccchHHHHHHHHHHhc--CCCCceEEECCCCCC------HHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHHHhcc
Confidence 45799999999999988854 334457799999994 33444444444211 00000000
Q ss_pred ---chhhHHHHHHHH-----hcCCeEEEEecCCcHH---------H-HHHHhccCCCCCCCCeEEEEcCChhhhhhc---
Q 047161 192 ---DFDGIKMIKREL-----RRRNVLVVIDDAVHIR---------Q-LNRLAGKHSWFGSGSRIIIPTRDEHLLRTL--- 250 (720)
Q Consensus 192 ---~~~~~~~l~~~l-----~~kr~LlVLDdv~~~~---------~-~~~l~~~~~~~~~gsrIivTTR~~~v~~~~--- 250 (720)
.......+++.+ .+++.+||+||++... . .+.+..... ..+-.+|.||.........
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~--~~~~~~i~~~~~~~~~~~~~~~ 170 (195)
T 1jbk_A 93 AKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALA--RGELHCVGATTLDEYRQYIEKD 170 (195)
T ss_dssp TCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHHHH--TTSCCEEEEECHHHHHHHTTTC
T ss_pred CCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhc--cCCeEEEEeCCHHHHHHHHhcC
Confidence 011112233322 2567899999997642 0 222222111 2245577777655432111
Q ss_pred -----cccceEecCCCCHHHHHHH
Q 047161 251 -----RVDGVYKVEKLDDDEALEL 269 (720)
Q Consensus 251 -----~~~~~~~l~~L~~~~s~~L 269 (720)
... .+.+++++.++..++
T Consensus 171 ~~l~~r~~-~i~~~~p~~~~~~~i 193 (195)
T 1jbk_A 171 AALERRFQ-KVFVAEPSVEDTIAI 193 (195)
T ss_dssp HHHHTTEE-EEECCCCCHHHHHTT
T ss_pred HHHHHHhc-eeecCCCCHHHHHHH
Confidence 112 578888888887654
No 195
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=94.94 E-value=0.18 Score=51.41 Aligned_cols=163 Identities=13% Similarity=0.096 Sum_probs=92.3
Q ss_pred CCCccccchhHHHHHHhhhccCCCeEEEEEecCCCccccchhcHHHHHHHHHHhhhhcccceeccchhhHHHH----HHH
Q 047161 127 LDDLVEMNSRLKKLRLLLDAESRDVRMIGICGMGGVELSEKDGLIALQKQLLSKTLMEIDIEIRNDFDGIKMI----KRE 202 (720)
Q Consensus 127 ~~~~vG~~~~~~~i~~~L~~~~~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~l----~~~ 202 (720)
.++++|.+..++.+.+++..+ ....++-+.|..|. +...+.+.+...+ +..-......+.....+ .+.
T Consensus 25 ~~~ivg~~~~~~~l~~~l~~~-~~~~~~L~~G~~G~------GKT~la~~la~~l-~~~~~~i~~~~~~~~~i~~~~~~~ 96 (324)
T 3u61_B 25 IDECILPAFDKETFKSITSKG-KIPHIILHSPSPGT------GKTTVAKALCHDV-NADMMFVNGSDCKIDFVRGPLTNF 96 (324)
T ss_dssp TTTSCCCHHHHHHHHHHHHTT-CCCSEEEECSSTTS------SHHHHHHHHHHHT-TEEEEEEETTTCCHHHHHTHHHHH
T ss_pred HHHHhCcHHHHHHHHHHHHcC-CCCeEEEeeCcCCC------CHHHHHHHHHHHh-CCCEEEEcccccCHHHHHHHHHHH
Confidence 467999999999999888633 22356778888998 4555555555552 22222222111223333 333
Q ss_pred Hhc-----CCeEEEEecCCcH---HHHHHHhccCCCCCCCCeEEEEcCChh-----hhhhccccceEecCCCCHHHHHHH
Q 047161 203 LRR-----RNVLVVIDDAVHI---RQLNRLAGKHSWFGSGSRIIIPTRDEH-----LLRTLRVDGVYKVEKLDDDEALEL 269 (720)
Q Consensus 203 l~~-----kr~LlVLDdv~~~---~~~~~l~~~~~~~~~gsrIivTTR~~~-----v~~~~~~~~~~~l~~L~~~~s~~L 269 (720)
... ++-++++||++.. +..+.+...+.....+.++|+||.... +...+ ..+++++++.++-.++
T Consensus 97 ~~~~~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR~---~~i~~~~~~~~e~~~i 173 (324)
T 3u61_B 97 ASAASFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRC---RVITFGQPTDEDKIEM 173 (324)
T ss_dssp HHBCCCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHHS---EEEECCCCCHHHHHHH
T ss_pred HhhcccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhhC---cEEEeCCCCHHHHHHH
Confidence 332 6789999999864 344555444433335678888887543 22222 3789999998874333
Q ss_pred H-------HHHhcCCCCCchHHHHHHHHHHHhCCCchH
Q 047161 270 F-------NKRAFDGQPSKDYVELIKRIVKYADGLPFA 300 (720)
Q Consensus 270 f-------~~~af~~~~~~~~~~~~~~i~~~c~glPLa 300 (720)
+ .+.+......-.-.+....+++.++|.+-.
T Consensus 174 l~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gd~R~ 211 (324)
T 3u61_B 174 MKQMIRRLTEICKHEGIAIADMKVVAALVKKNFPDFRK 211 (324)
T ss_dssp HHHHHHHHHHHHHHHTCCBSCHHHHHHHHHHTCSCTTH
T ss_pred HHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhCCCCHHH
Confidence 2 222211111110024556778888887653
No 196
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=94.88 E-value=0.054 Score=52.35 Aligned_cols=167 Identities=13% Similarity=0.045 Sum_probs=85.5
Q ss_pred CCCCccccc---hhHHHHHHhhhccCCCeEEEEEecCCCccccchhcHHHHHHHHHHhhhhc-ccceeccchhhHHHHHH
Q 047161 126 ILDDLVEMN---SRLKKLRLLLDAESRDVRMIGICGMGGVELSEKDGLIALQKQLLSKTLME-IDIEIRNDFDGIKMIKR 201 (720)
Q Consensus 126 ~~~~~vG~~---~~~~~i~~~L~~~~~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~-~~~~~~~~~~~~~~l~~ 201 (720)
..++++|.+ ..++.+..+... ...+.+.|+|..|+ +...+.+.+...+... ......+..+....+.+
T Consensus 26 ~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~ll~G~~G~------GKT~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (242)
T 3bos_A 26 TFTSYYPAAGNDELIGALKSAASG--DGVQAIYLWGPVKS------GRTHLIHAACARANELERRSFYIPLGIHASISTA 97 (242)
T ss_dssp STTTSCC--CCHHHHHHHHHHHHT--CSCSEEEEECSTTS------SHHHHHHHHHHHHHHTTCCEEEEEGGGGGGSCGG
T ss_pred ChhhccCCCCCHHHHHHHHHHHhC--CCCCeEEEECCCCC------CHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHH
Confidence 335677743 334444444432 24567889999999 4444555555442211 00111111111111111
Q ss_pred HH--hcCCeEEEEecCCcHH--H--HHHHhccCCCC-CCCC-eEEEEcCCh---------hhhhhccccceEecCCCCHH
Q 047161 202 EL--RRRNVLVVIDDAVHIR--Q--LNRLAGKHSWF-GSGS-RIIIPTRDE---------HLLRTLRVDGVYKVEKLDDD 264 (720)
Q Consensus 202 ~l--~~kr~LlVLDdv~~~~--~--~~~l~~~~~~~-~~gs-rIivTTR~~---------~v~~~~~~~~~~~l~~L~~~ 264 (720)
.+ -.+.-+||+||++... . .+.+...+... ..|. +||+||+.. .+...+.....+++.+++.+
T Consensus 98 ~~~~~~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~l~~r~~~~~~i~l~~~~~~ 177 (242)
T 3bos_A 98 LLEGLEQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVLPDLVSRMHWGLTYQLQPMMDD 177 (242)
T ss_dssp GGTTGGGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCCHHHHHHHHHSEEEECCCCCGG
T ss_pred HHHhccCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhhhhhhhHhhcCceEEeCCCCHH
Confidence 11 1456789999997531 1 22222221110 1232 477777632 22222222368999999999
Q ss_pred HHHHHHHHHhcCC--CCCchHHHHHHHHHHHhCCCchHHHH
Q 047161 265 EALELFNKRAFDG--QPSKDYVELIKRIVKYADGLPFALET 303 (720)
Q Consensus 265 ~s~~Lf~~~af~~--~~~~~~~~~~~~i~~~c~glPLai~~ 303 (720)
+..+++...+-.. ... .+....+++.++|.+-.+..
T Consensus 178 ~~~~~l~~~~~~~~~~~~---~~~~~~l~~~~~g~~r~l~~ 215 (242)
T 3bos_A 178 EKLAALQRRAAMRGLQLP---EDVGRFLLNRMARDLRTLFD 215 (242)
T ss_dssp GHHHHHHHHHHHTTCCCC---HHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCC---HHHHHHHHHHccCCHHHHHH
Confidence 9999998876422 222 24456778888888766554
No 197
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=94.62 E-value=0.43 Score=48.80 Aligned_cols=170 Identities=15% Similarity=0.098 Sum_probs=99.1
Q ss_pred CCCCccccchhHHHHHHhhhcc---CCCeEEEEEecCCCccccchhcHHHHHHHHHHhhhhcccceec-cchhhHHHHHH
Q 047161 126 ILDDLVEMNSRLKKLRLLLDAE---SRDVRMIGICGMGGVELSEKDGLIALQKQLLSKTLMEIDIEIR-NDFDGIKMIKR 201 (720)
Q Consensus 126 ~~~~~vG~~~~~~~i~~~L~~~---~~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~~~~~~~-~~~~~~~~l~~ 201 (720)
..++++|++..++++..++... ......|-|+|..|+ +...+.+.+... ......... ........+..
T Consensus 27 ~~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~Gt------GKT~la~~ia~~-~~~~~~~~~~~~~~~~~~~~~ 99 (338)
T 3pfi_A 27 NFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGL------GKTTLANIISYE-MSANIKTTAAPMIEKSGDLAA 99 (338)
T ss_dssp SGGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTS------SHHHHHHHHHHH-TTCCEEEEEGGGCCSHHHHHH
T ss_pred CHHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCC------CHHHHHHHHHHH-hCCCeEEecchhccchhHHHH
Confidence 3467999999999998888532 334556789999999 444555555554 222211111 11123344444
Q ss_pred HHh--cCCeEEEEecCCcH--HHHHHHhccCCCC------------------CCCCeEEEEcCChhhhh-h--ccccceE
Q 047161 202 ELR--RRNVLVVIDDAVHI--RQLNRLAGKHSWF------------------GSGSRIIIPTRDEHLLR-T--LRVDGVY 256 (720)
Q Consensus 202 ~l~--~kr~LlVLDdv~~~--~~~~~l~~~~~~~------------------~~gsrIivTTR~~~v~~-~--~~~~~~~ 256 (720)
.+. .+..+|+||+++.. ...+.+...+... .++-++|.+|....... . -..+..+
T Consensus 100 ~~~~~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~atn~~~~l~~~L~~R~~~~i 179 (338)
T 3pfi_A 100 ILTNLSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTRAGMLSNPLRDRFGMQF 179 (338)
T ss_dssp HHHTCCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEEEESCGGGSCHHHHTTCSEEE
T ss_pred HHHhccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEEeCCCccccCHHHHhhcCEEe
Confidence 443 46789999999854 3333333322211 11245666665433211 1 1234589
Q ss_pred ecCCCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHhCCCchHHHH
Q 047161 257 KVEKLDDDEALELFNKRAFDGQPSKDYVELIKRIVKYADGLPFALET 303 (720)
Q Consensus 257 ~l~~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~i~~~c~glPLai~~ 303 (720)
.+.+++.++..+++.+.+-.... .--.+....+++.+.|.|-.+..
T Consensus 180 ~l~~~~~~e~~~il~~~~~~~~~-~~~~~~~~~l~~~~~G~~r~l~~ 225 (338)
T 3pfi_A 180 RLEFYKDSELALILQKAALKLNK-TCEEKAALEIAKRSRSTPRIALR 225 (338)
T ss_dssp ECCCCCHHHHHHHHHHHHHHTTC-EECHHHHHHHHHTTTTCHHHHHH
T ss_pred eCCCcCHHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHCcCHHHHHH
Confidence 99999999999999877643211 11134456677788998854443
No 198
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.17 E-value=0.088 Score=45.64 Aligned_cols=53 Identities=13% Similarity=0.187 Sum_probs=24.8
Q ss_pred EEeccCCCCCc--ccCCCCCCCCCCCEEeccCCCCCcccC-cCcCCCCCCCEEeccCccc
Q 047161 500 FLNLNDCKILV--RLPSTINGWKSLRTVNLSRCSKLENMP-ESLGQMESLEELDVSGTVI 556 (720)
Q Consensus 500 ~L~Ls~n~~~~--~lp~~i~~l~~L~~L~L~~~~~l~~lp-~~~~~L~~L~~L~L~~n~l 556 (720)
.++-+++. +. .+|..+ -++|++|+|++|.+. .+| ..|..+++|+.|+|++|.+
T Consensus 12 ~v~Cs~~~-L~~~~vP~~l--p~~l~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRG-LTWASLPTAF--PVDTTELVLTGNNLT-ALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSC-CCTTTSCSCC--CTTCSEEECTTSCCS-SCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCC-CccccCCCCC--CcCCCEEECCCCcCC-ccChhhhhhccccCEEEecCCCe
Confidence 34444444 23 455432 234555555555432 233 3345555555555555543
No 199
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=94.15 E-value=1.3 Score=44.89 Aligned_cols=164 Identities=13% Similarity=0.080 Sum_probs=89.7
Q ss_pred CCCCccccchhHHHHHHhhh----------ccCCCeEEEEEecCCCccccchhcHHHHHHHHHHhhhhcccceec-----
Q 047161 126 ILDDLVEMNSRLKKLRLLLD----------AESRDVRMIGICGMGGVELSEKDGLIALQKQLLSKTLMEIDIEIR----- 190 (720)
Q Consensus 126 ~~~~~vG~~~~~~~i~~~L~----------~~~~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~~~~~~~----- 190 (720)
.-++++|.+..++.+.+.+. ......+-|-++|..|. +...+.+.+... .........
T Consensus 16 ~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGt------GKT~la~aia~~-~~~~~~~v~~~~l~ 88 (322)
T 3eie_A 16 KWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGT------GKSYLAKAVATE-ANSTFFSVSSSDLV 88 (322)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSS------CHHHHHHHHHHH-HTCEEEEEEHHHHH
T ss_pred CHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCC------cHHHHHHHHHHH-HCCCEEEEchHHHh
Confidence 34679999999999987762 11112345789999999 444444555444 221111110
Q ss_pred -----cchhhHHHHHHHH-hcCCeEEEEecCCcHH-------------HHHHHhccCC---CCCCCCeEEEEcCChhhhh
Q 047161 191 -----NDFDGIKMIKREL-RRRNVLVVIDDAVHIR-------------QLNRLAGKHS---WFGSGSRIIIPTRDEHLLR 248 (720)
Q Consensus 191 -----~~~~~~~~l~~~l-~~kr~LlVLDdv~~~~-------------~~~~l~~~~~---~~~~gsrIivTTR~~~v~~ 248 (720)
........+.... ..+..+|++|+++... ....+...+. ....+..||.||.......
T Consensus 89 ~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~~~~ld 168 (322)
T 3eie_A 89 SKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLD 168 (322)
T ss_dssp TTTGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESCGGGSC
T ss_pred hcccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceEEEEecCChhhCC
Confidence 1111122222222 3466899999998431 1222222222 2334566776776543321
Q ss_pred h---ccccceEecCCCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHhCCC
Q 047161 249 T---LRVDGVYKVEKLDDDEALELFNKRAFDGQPSKDYVELIKRIVKYADGL 297 (720)
Q Consensus 249 ~---~~~~~~~~l~~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~i~~~c~gl 297 (720)
. -..+..+.+...+.++-.+++..++......-. ......+++++.|.
T Consensus 169 ~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~-~~~l~~la~~t~g~ 219 (322)
T 3eie_A 169 SAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVLT-KEDYRTLGAMTEGY 219 (322)
T ss_dssp HHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCCCCC-HHHHHHHHHTTTTC
T ss_pred HHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCCCCC-HHHHHHHHHHcCCC
Confidence 1 134567889999999999999987755421111 12235667777764
No 200
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=94.09 E-value=0.62 Score=46.87 Aligned_cols=139 Identities=10% Similarity=0.058 Sum_probs=81.6
Q ss_pred CccccchhHHHHHHhhhcc-------------CCCeEEEEEecCCCccccchhcHHHHHHHHHHhhhhc------cccee
Q 047161 129 DLVEMNSRLKKLRLLLDAE-------------SRDVRMIGICGMGGVELSEKDGLIALQKQLLSKTLME------IDIEI 189 (720)
Q Consensus 129 ~~vG~~~~~~~i~~~L~~~-------------~~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~------~~~~~ 189 (720)
+++|.+..++.|.+++..- ......|-|+|..|++ ...+.+.+...+... .....
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtG------KT~la~~la~~l~~~~~~~~~~~~~~ 105 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTG------KTTVALKMAGLLHRLGYVRKGHLVSV 105 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSS------HHHHHHHHHHHHHHTTSSSSCCEEEE
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCC------HHHHHHHHHHHHHhcCCcCCCcEEEE
Confidence 4789998888887665311 2344567899999994 344444444332110 00000
Q ss_pred --cc-----chhhHHHHHHHHh-cCCeEEEEecCC-----------cHHHHHHHhccCCCCCCCCeEEEEcCChh-----
Q 047161 190 --RN-----DFDGIKMIKRELR-RRNVLVVIDDAV-----------HIRQLNRLAGKHSWFGSGSRIIIPTRDEH----- 245 (720)
Q Consensus 190 --~~-----~~~~~~~l~~~l~-~kr~LlVLDdv~-----------~~~~~~~l~~~~~~~~~gsrIivTTR~~~----- 245 (720)
.+ .......+...+. .+.-+|++|+++ .......+...+.....+.+||.||....
T Consensus 106 ~~~~l~~~~~g~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~~~~~~~~~~~ 185 (309)
T 3syl_A 106 TRDDLVGQYIGHTAPKTKEVLKRAMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILAGYADRMENFF 185 (309)
T ss_dssp CGGGTCCSSTTCHHHHHHHHHHHHTTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEEECHHHHHHHH
T ss_pred cHHHhhhhcccccHHHHHHHHHhcCCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEeCChHHHHHHH
Confidence 00 0111222333332 245699999998 44445556555554556678888886433
Q ss_pred -----hhhhccccceEecCCCCHHHHHHHHHHHhc
Q 047161 246 -----LLRTLRVDGVYKVEKLDDDEALELFNKRAF 275 (720)
Q Consensus 246 -----v~~~~~~~~~~~l~~L~~~~s~~Lf~~~af 275 (720)
+... ....+.+++++.++-.+++..++-
T Consensus 186 ~~~~~l~~R--~~~~i~~~~~~~~~~~~il~~~l~ 218 (309)
T 3syl_A 186 QSNPGFRSR--IAHHIEFPDYSDEELFEIAGHMLD 218 (309)
T ss_dssp HHSTTHHHH--EEEEEEECCCCHHHHHHHHHHHHH
T ss_pred hhCHHHHHh--CCeEEEcCCcCHHHHHHHHHHHHH
Confidence 2222 346889999999999999887764
No 201
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=93.24 E-value=0.89 Score=48.42 Aligned_cols=115 Identities=17% Similarity=0.145 Sum_probs=67.2
Q ss_pred CCeEEEEecCCcH----HHHHHHhccCCC-CCCCCeEEEEcCCh---------hhhhhccccceEecCCCCHHHHHHHHH
Q 047161 206 RNVLVVIDDAVHI----RQLNRLAGKHSW-FGSGSRIIIPTRDE---------HLLRTLRVDGVYKVEKLDDDEALELFN 271 (720)
Q Consensus 206 kr~LlVLDdv~~~----~~~~~l~~~~~~-~~~gsrIivTTR~~---------~v~~~~~~~~~~~l~~L~~~~s~~Lf~ 271 (720)
+.-+|++||++.. ..-+.+...+.. ...|..||+||... .+...+....++.+++++.++-.+++.
T Consensus 194 ~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL~ 273 (440)
T 2z4s_A 194 KVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIAR 273 (440)
T ss_dssp TCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHHH
T ss_pred CCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHHHH
Confidence 6779999999642 122233322211 13577899988752 233334333578999999999999998
Q ss_pred HHhcCC--CCCchHHHHHHHHHHHhCCCchHHHHhhh------hccC--CCHHHHHHHHhhh
Q 047161 272 KRAFDG--QPSKDYVELIKRIVKYADGLPFALETLGS------VLFG--RSVDGWRSTLERL 323 (720)
Q Consensus 272 ~~af~~--~~~~~~~~~~~~i~~~c~glPLai~~~g~------~l~~--k~~~~W~~~l~~l 323 (720)
+.+-.. ..++ +....+++.+.|.+-.+..+-. ...+ -+.+.++.++..+
T Consensus 274 ~~~~~~~~~i~~---e~l~~la~~~~gn~R~l~~~L~~~~~~a~~~~~~It~~~~~~~l~~~ 332 (440)
T 2z4s_A 274 KMLEIEHGELPE---EVLNFVAENVDDNLRRLRGAIIKLLVYKETTGKEVDLKEAILLLKDF 332 (440)
T ss_dssp HHHHHHTCCCCT---THHHHHHHHCCSCHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHTSTT
T ss_pred HHHHHcCCCCCH---HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 877422 2222 2345677888887754332211 1122 2566677776643
No 202
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=93.06 E-value=4.5 Score=41.50 Aligned_cols=162 Identities=13% Similarity=0.095 Sum_probs=87.7
Q ss_pred CCCCccccchhHHHHHHhhhc----------cCCCeEEEEEecCCCccccchhcHHHHHHHHHHhhhhccccee------
Q 047161 126 ILDDLVEMNSRLKKLRLLLDA----------ESRDVRMIGICGMGGVELSEKDGLIALQKQLLSKTLMEIDIEI------ 189 (720)
Q Consensus 126 ~~~~~vG~~~~~~~i~~~L~~----------~~~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~~~~~~------ 189 (720)
..++++|.+..++.+.+.+.. .....+-|-|+|..|. +...+.+.+...+ .......
T Consensus 49 ~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGt------GKT~la~ala~~~-~~~~~~v~~~~l~ 121 (355)
T 2qp9_X 49 KWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGT------GKSYLAKAVATEA-NSTFFSVSSSDLV 121 (355)
T ss_dssp CGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTS------CHHHHHHHHHHHH-TCEEEEEEHHHHH
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCC------cHHHHHHHHHHHh-CCCEEEeeHHHHh
Confidence 346799999999999876631 0111234779999998 4444445554442 2111111
Q ss_pred ----ccchhhHHHHHHHH-hcCCeEEEEecCCcHH-------------HHHHHhccCC---CCCCCCeEEEEcCChh---
Q 047161 190 ----RNDFDGIKMIKREL-RRRNVLVVIDDAVHIR-------------QLNRLAGKHS---WFGSGSRIIIPTRDEH--- 245 (720)
Q Consensus 190 ----~~~~~~~~~l~~~l-~~kr~LlVLDdv~~~~-------------~~~~l~~~~~---~~~~gsrIivTTR~~~--- 245 (720)
.........+.... ..+..+|++|+++... ....+...+. ....+-.||.||....
T Consensus 122 ~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~~~~ld 201 (355)
T 2qp9_X 122 SKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLD 201 (355)
T ss_dssp SCC---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEEEEEEESCGGGSC
T ss_pred hhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeEEEeecCCcccCC
Confidence 01111122222222 3577899999998531 1222222221 1234556666776442
Q ss_pred --hhhhccccceEecCCCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHhCCC
Q 047161 246 --LLRTLRVDGVYKVEKLDDDEALELFNKRAFDGQPSKDYVELIKRIVKYADGL 297 (720)
Q Consensus 246 --v~~~~~~~~~~~l~~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~i~~~c~gl 297 (720)
+.+ ..+..+.+...+.++-.+++..++-.....-. ......+++.+.|.
T Consensus 202 ~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~-~~~l~~la~~t~G~ 252 (355)
T 2qp9_X 202 SAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPSVLT-KEDYRTLGAMTEGY 252 (355)
T ss_dssp HHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTSCBCCC-HHHHHHHHHHTTTC
T ss_pred HHHHc--ccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCC-HHHHHHHHHHcCCC
Confidence 222 45567889999999999999887654311111 12345677778774
No 203
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=93.05 E-value=0.16 Score=43.88 Aligned_cols=37 Identities=22% Similarity=0.251 Sum_probs=28.6
Q ss_pred CCCcEEeccCCCCCcccCC-CCCCCCCCCEEeccCCCCC
Q 047161 496 TGLVFLNLNDCKILVRLPS-TINGWKSLRTVNLSRCSKL 533 (720)
Q Consensus 496 ~~L~~L~Ls~n~~~~~lp~-~i~~l~~L~~L~L~~~~~l 533 (720)
++|++|+|++|.+ ..+|. .+..+++|++|+|++|...
T Consensus 31 ~~l~~L~Ls~N~l-~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 31 VDTTELVLTGNNL-TALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TTCSEEECTTSCC-SSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred cCCCEEECCCCcC-CccChhhhhhccccCEEEecCCCee
Confidence 4689999999984 45554 5678899999999998653
No 204
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=92.97 E-value=0.96 Score=48.20 Aligned_cols=165 Identities=17% Similarity=0.181 Sum_probs=89.5
Q ss_pred CCCccccchhH---HHHHHhhhccCCCeEEEEEecCCCccccchhcHHHHHHHHHHhhhhcccceeccchhhHHHHHHHH
Q 047161 127 LDDLVEMNSRL---KKLRLLLDAESRDVRMIGICGMGGVELSEKDGLIALQKQLLSKTLMEIDIEIRNDFDGIKMIKREL 203 (720)
Q Consensus 127 ~~~~vG~~~~~---~~i~~~L~~~~~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~l 203 (720)
.+++||.+..+ ..+...+.. ..+..+-|||..|+ +...+.+.|... .................++..+
T Consensus 25 l~~ivGq~~~~~~~~~L~~~i~~--~~~~~vLL~GppGt------GKTtlAr~ia~~-~~~~f~~l~a~~~~~~~ir~~~ 95 (447)
T 3pvs_A 25 LAQYIGQQHLLAAGKPLPRAIEA--GHLHSMILWGPPGT------GKTTLAEVIARY-ANADVERISAVTSGVKEIREAI 95 (447)
T ss_dssp TTTCCSCHHHHSTTSHHHHHHHH--TCCCEEEEECSTTS------SHHHHHHHHHHH-TTCEEEEEETTTCCHHHHHHHH
T ss_pred HHHhCCcHHHHhchHHHHHHHHc--CCCcEEEEECCCCC------cHHHHHHHHHHH-hCCCeEEEEeccCCHHHHHHHH
Confidence 46789988777 566666643 34567889999999 444555555554 3322222221112222222222
Q ss_pred --------hcCCeEEEEecCCcH--HHHHHHhccCCCCCCCCeEE-EEcCChh--hhhhc-cccceEecCCCCHHHHHHH
Q 047161 204 --------RRRNVLVVIDDAVHI--RQLNRLAGKHSWFGSGSRII-IPTRDEH--LLRTL-RVDGVYKVEKLDDDEALEL 269 (720)
Q Consensus 204 --------~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIi-vTTR~~~--v~~~~-~~~~~~~l~~L~~~~s~~L 269 (720)
.+++.+|++|+++.. .+.+.+...+.. +. -++| .||.+.. +.... .--.++.+++++.++-.++
T Consensus 96 ~~a~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~-~~-v~lI~att~n~~~~l~~aL~sR~~v~~l~~l~~edi~~i 173 (447)
T 3pvs_A 96 ERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIED-GT-ITFIGATTENPSFELNSALLSRARVYLLKSLSTEDIEQV 173 (447)
T ss_dssp HHHHHHHHTTCCEEEEEETTTCC------CCHHHHHT-TS-CEEEEEESSCGGGSSCHHHHTTEEEEECCCCCHHHHHHH
T ss_pred HHHHHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhc-Cc-eEEEecCCCCcccccCHHHhCceeEEeeCCcCHHHHHHH
Confidence 357889999999864 334444443332 11 2333 3555542 11111 1123788999999999999
Q ss_pred HHHHhcCC--C---CCc-hHHHHHHHHHHHhCCCchHHH
Q 047161 270 FNKRAFDG--Q---PSK-DYVELIKRIVKYADGLPFALE 302 (720)
Q Consensus 270 f~~~af~~--~---~~~-~~~~~~~~i~~~c~glPLai~ 302 (720)
+.+.+-.. . ... --.+....++++++|.+-.+.
T Consensus 174 l~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~ll 212 (447)
T 3pvs_A 174 LTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRAL 212 (447)
T ss_dssp HHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHH
T ss_pred HHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHH
Confidence 88876431 0 111 113445667777888765443
No 205
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=92.88 E-value=4.1 Score=42.39 Aligned_cols=172 Identities=13% Similarity=0.091 Sum_probs=91.2
Q ss_pred CCCCCccccchhHHHHHHhhhcc----------CCCeEEEEEecCCCccccchhcHHHHHHHHHHhhhhcccceec----
Q 047161 125 GILDDLVEMNSRLKKLRLLLDAE----------SRDVRMIGICGMGGVELSEKDGLIALQKQLLSKTLMEIDIEIR---- 190 (720)
Q Consensus 125 ~~~~~~vG~~~~~~~i~~~L~~~----------~~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~~~~~~~---- 190 (720)
...++++|.+..++.+...+... ....+-|-|+|..|+ +...+.+.+... .+.......
T Consensus 112 ~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGt------GKT~la~aia~~-~~~~~~~v~~~~l 184 (389)
T 3vfd_A 112 VKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGN------GKTMLAKAVAAE-SNATFFNISAASL 184 (389)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTS------CHHHHHHHHHHH-TTCEEEEECSCCC
T ss_pred CChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCC------CHHHHHHHHHHh-hcCcEEEeeHHHh
Confidence 34467999999999998877310 112356789999999 444555555444 221111110
Q ss_pred ------cchhhHHHHHHHH-hcCCeEEEEecCCcH-------------HHHHHHhccCC----CCCCCCeEEEEcCChhh
Q 047161 191 ------NDFDGIKMIKREL-RRRNVLVVIDDAVHI-------------RQLNRLAGKHS----WFGSGSRIIIPTRDEHL 246 (720)
Q Consensus 191 ------~~~~~~~~l~~~l-~~kr~LlVLDdv~~~-------------~~~~~l~~~~~----~~~~gsrIivTTR~~~v 246 (720)
........+.... ..+..+|+||+++.. .....+...+. .....-+||.||....-
T Consensus 185 ~~~~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~ 264 (389)
T 3vfd_A 185 TSKYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQE 264 (389)
T ss_dssp -------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----CEEEEEEESCGGG
T ss_pred hccccchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCCEEEEEecCCchh
Confidence 1111122222222 345579999999743 11122222111 11223456666654322
Q ss_pred hhh---ccccceEecCCCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHhCCCch-HHHHh
Q 047161 247 LRT---LRVDGVYKVEKLDDDEALELFNKRAFDGQPSKDYVELIKRIVKYADGLPF-ALETL 304 (720)
Q Consensus 247 ~~~---~~~~~~~~l~~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~i~~~c~glPL-ai~~~ 304 (720)
... -.....+.+...+.++-.+++...+-.....-. .+....+++.+.|..- ++..+
T Consensus 265 l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~-~~~~~~la~~~~g~~~~~l~~L 325 (389)
T 3vfd_A 265 LDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPLT-QKELAQLARMTDGYSGSDLTAL 325 (389)
T ss_dssp CCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCCSC-HHHHHHHHHHTTTCCHHHHHHH
T ss_pred cCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHcCCCCHHHHHHH
Confidence 111 133456889999999999999877644311111 2344678888888654 44443
No 206
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=92.85 E-value=1.3 Score=44.75 Aligned_cols=89 Identities=11% Similarity=0.141 Sum_probs=52.7
Q ss_pred CCeEEEEecCCcHH----HHHHHhccCCC-CCCCCeEEEEcCCh---------hhhhhccccceEecCCCCHHHHHHHHH
Q 047161 206 RNVLVVIDDAVHIR----QLNRLAGKHSW-FGSGSRIIIPTRDE---------HLLRTLRVDGVYKVEKLDDDEALELFN 271 (720)
Q Consensus 206 kr~LlVLDdv~~~~----~~~~l~~~~~~-~~~gsrIivTTR~~---------~v~~~~~~~~~~~l~~L~~~~s~~Lf~ 271 (720)
+.-+|++||+.... ..+.+...+.. ...|.+||+||... .+...+....++++++ +.++-.+++.
T Consensus 98 ~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~~~i~l~~-~~~e~~~il~ 176 (324)
T 1l8q_A 98 SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEIEL-DNKTRFKIIK 176 (324)
T ss_dssp TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEECCC-CHHHHHHHHH
T ss_pred CCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccCceEEEeCC-CHHHHHHHHH
Confidence 46789999996532 12233222211 13466788887532 2233333335789999 9999999998
Q ss_pred HHhcCC--CCCchHHHHHHHHHHHhCCCch
Q 047161 272 KRAFDG--QPSKDYVELIKRIVKYADGLPF 299 (720)
Q Consensus 272 ~~af~~--~~~~~~~~~~~~i~~~c~glPL 299 (720)
+.+... ..+ .+....+++++ |..-
T Consensus 177 ~~~~~~~~~l~---~~~l~~l~~~~-g~~r 202 (324)
T 1l8q_A 177 EKLKEFNLELR---KEVIDYLLENT-KNVR 202 (324)
T ss_dssp HHHHHTTCCCC---HHHHHHHHHHC-SSHH
T ss_pred HHHHhcCCCCC---HHHHHHHHHhC-CCHH
Confidence 877533 222 23455677777 6553
No 207
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=92.55 E-value=5 Score=39.75 Aligned_cols=170 Identities=16% Similarity=0.157 Sum_probs=91.2
Q ss_pred CCCCCccccchhHHHHHHhhhcc----------CCCeEEEEEecCCCccccchhcHHHHHHHHHHhhhhccccee-----
Q 047161 125 GILDDLVEMNSRLKKLRLLLDAE----------SRDVRMIGICGMGGVELSEKDGLIALQKQLLSKTLMEIDIEI----- 189 (720)
Q Consensus 125 ~~~~~~vG~~~~~~~i~~~L~~~----------~~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~~~~~~----- 189 (720)
...++++|.+..++.+.+.+... ....+.|.|+|..|. +...+.+.+.... .......
T Consensus 18 ~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~Gt------GKT~la~~la~~~-~~~~~~i~~~~l 90 (297)
T 3b9p_A 18 VEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGN------GKTLLARAVATEC-SATFLNISAASL 90 (297)
T ss_dssp CCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSS------CHHHHHHHHHHHT-TCEEEEEESTTT
T ss_pred CCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCC------CHHHHHHHHHHHh-CCCeEEeeHHHH
Confidence 34467999999999998776321 112456789999999 4444455554442 2111111
Q ss_pred -----ccchhhHHHHHH-HHhcCCeEEEEecCCcH-------------HHHHHHhc---cCCCC--CCCCeEEEEcCChh
Q 047161 190 -----RNDFDGIKMIKR-ELRRRNVLVVIDDAVHI-------------RQLNRLAG---KHSWF--GSGSRIIIPTRDEH 245 (720)
Q Consensus 190 -----~~~~~~~~~l~~-~l~~kr~LlVLDdv~~~-------------~~~~~l~~---~~~~~--~~gsrIivTTR~~~ 245 (720)
.........+.. ....+..+|++|+++.. .....+.. ..+.. +.+-.||.||...+
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~ 170 (297)
T 3b9p_A 91 TSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQ 170 (297)
T ss_dssp SSSSCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGG
T ss_pred hhcccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChh
Confidence 011111222222 22456789999999653 11111221 12211 23455677776543
Q ss_pred -----hhhhccccceEecCCCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHhCCCch-HHHHh
Q 047161 246 -----LLRTLRVDGVYKVEKLDDDEALELFNKRAFDGQPSKDYVELIKRIVKYADGLPF-ALETL 304 (720)
Q Consensus 246 -----v~~~~~~~~~~~l~~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~i~~~c~glPL-ai~~~ 304 (720)
+.+ .....+.+...+.++-.+++...+-.....-. .+....+++.+.|.+- ++..+
T Consensus 171 ~l~~~l~~--R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~-~~~~~~la~~~~g~~~~~l~~l 232 (297)
T 3b9p_A 171 ELDEAALR--RFTKRVYVSLPDEQTRELLLNRLLQKQGSPLD-TEALRRLAKITDGYSGSDLTAL 232 (297)
T ss_dssp GBCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHGGGSCCSC-HHHHHHHHHHTTTCCHHHHHHH
T ss_pred hCCHHHHh--hCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHcCCCCHHHHHHH
Confidence 222 23457788888888888888776543211111 2345677888888875 44333
No 208
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=92.54 E-value=3.7 Score=42.20 Aligned_cols=90 Identities=10% Similarity=0.046 Sum_probs=53.6
Q ss_pred eEEEEecCCcH--HHHHHHhccCCCCCCCCeEEEEcC-C----------------hhhhhhccccceEecCCCCHHHHHH
Q 047161 208 VLVVIDDAVHI--RQLNRLAGKHSWFGSGSRIIIPTR-D----------------EHLLRTLRVDGVYKVEKLDDDEALE 268 (720)
Q Consensus 208 ~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIivTTR-~----------------~~v~~~~~~~~~~~l~~L~~~~s~~ 268 (720)
.+|++|+++.. +..+.+...+...... .+|++|. . ..+...+. .+.+++++.++..+
T Consensus 191 ~vl~IDEi~~l~~~~~~~L~~~le~~~~~-~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~---~i~~~~~~~~e~~~ 266 (368)
T 3uk6_A 191 GVLFIDEVHMLDIESFSFLNRALESDMAP-VLIMATNRGITRIRGTSYQSPHGIPIDLLDRLL---IVSTTPYSEKDTKQ 266 (368)
T ss_dssp CEEEEESGGGSBHHHHHHHHHHTTCTTCC-EEEEEESCSEEECBTSSCEEETTCCHHHHTTEE---EEEECCCCHHHHHH
T ss_pred ceEEEhhccccChHHHHHHHHHhhCcCCC-eeeeecccceeeeeccCCCCcccCCHHHHhhcc---EEEecCCCHHHHHH
Confidence 48999999864 4455666555433333 3444442 1 23333332 47999999999999
Q ss_pred HHHHHhcCCCCCchHHHHHHHHHHHhC-CCchHHH
Q 047161 269 LFNKRAFDGQPSKDYVELIKRIVKYAD-GLPFALE 302 (720)
Q Consensus 269 Lf~~~af~~~~~~~~~~~~~~i~~~c~-glPLai~ 302 (720)
++.+.+-.....- -.+....+++++. |.|-.+.
T Consensus 267 il~~~~~~~~~~~-~~~~l~~l~~~~~~G~~r~~~ 300 (368)
T 3uk6_A 267 ILRIRCEEEDVEM-SEDAYTVLTRIGLETSLRYAI 300 (368)
T ss_dssp HHHHHHHHTTCCB-CHHHHHHHHHHHHHSCHHHHH
T ss_pred HHHHHHHHcCCCC-CHHHHHHHHHHhcCCCHHHHH
Confidence 9987764331111 1234567788887 7765443
No 209
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=92.36 E-value=5 Score=40.46 Aligned_cols=165 Identities=14% Similarity=0.093 Sum_probs=89.9
Q ss_pred CCCccccchhHHHHHHhhhc---------c-CCCeEEEEEecCCCccccchhcHHHHHHHHHHhhhhccccee-------
Q 047161 127 LDDLVEMNSRLKKLRLLLDA---------E-SRDVRMIGICGMGGVELSEKDGLIALQKQLLSKTLMEIDIEI------- 189 (720)
Q Consensus 127 ~~~~vG~~~~~~~i~~~L~~---------~-~~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~~~~~~------- 189 (720)
-++++|.+..++.+.+.+.. + ....+-|-++|..|. +...+.+.+...+........
T Consensus 11 ~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGt------GKT~la~ala~~~~~~~~~~i~~~~l~~ 84 (322)
T 1xwi_A 11 WSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGT------GKSYLAKAVATEANNSTFFSISSSDLVS 84 (322)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSS------CHHHHHHHHHHHTTSCEEEEEECCSSCC
T ss_pred HHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCc------cHHHHHHHHHHHcCCCcEEEEEhHHHHh
Confidence 46789999988888776531 1 122356889999998 555556666655311111111
Q ss_pred ---ccchhhHHHHHHHH-hcCCeEEEEecCCcH-------------HHHHHHhccCCC---CCCCCeEEEEcCChhhhh-
Q 047161 190 ---RNDFDGIKMIKREL-RRRNVLVVIDDAVHI-------------RQLNRLAGKHSW---FGSGSRIIIPTRDEHLLR- 248 (720)
Q Consensus 190 ---~~~~~~~~~l~~~l-~~kr~LlVLDdv~~~-------------~~~~~l~~~~~~---~~~gsrIivTTR~~~v~~- 248 (720)
.........+.... ..+..+|++|+++.. .....+...+.. ...+-.||.||.......
T Consensus 85 ~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~~~ld~ 164 (322)
T 1xwi_A 85 KWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDS 164 (322)
T ss_dssp SSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESCTTTSCH
T ss_pred hhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEEEEecCCcccCCH
Confidence 01112222232222 357789999999754 112222222221 223445665665432211
Q ss_pred h--ccccceEecCCCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHhCCCc
Q 047161 249 T--LRVDGVYKVEKLDDDEALELFNKRAFDGQPSKDYVELIKRIVKYADGLP 298 (720)
Q Consensus 249 ~--~~~~~~~~l~~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~i~~~c~glP 298 (720)
. -..+..+.+...+.++-.+++..+.-.....-. ......+++.+.|..
T Consensus 165 al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~-~~~l~~la~~t~G~s 215 (322)
T 1xwi_A 165 AIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSLT-EADFRELGRKTDGYS 215 (322)
T ss_dssp HHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBCCC-HHHHHHHHHTCTTCC
T ss_pred HHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCC-HHHHHHHHHHcCCCC
Confidence 1 144567889999999999999887643311111 123456777777764
No 210
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=92.04 E-value=5.2 Score=39.91 Aligned_cols=162 Identities=14% Similarity=0.175 Sum_probs=87.9
Q ss_pred CCCccccchhHHHHHHhhhc-----------cCCCeEEEEEecCCCccccchhcHHHHHHHHHHhhhhcccceec-----
Q 047161 127 LDDLVEMNSRLKKLRLLLDA-----------ESRDVRMIGICGMGGVELSEKDGLIALQKQLLSKTLMEIDIEIR----- 190 (720)
Q Consensus 127 ~~~~vG~~~~~~~i~~~L~~-----------~~~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~~~~~~~----- 190 (720)
.++++|.+..++++.+.+.. +-...+.|.|+|..|. +...+.+.+... .........
T Consensus 14 ~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~Gt------GKT~la~ala~~-~~~~~i~v~~~~l~ 86 (301)
T 3cf0_A 14 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGC------GKTLLAKAIANE-CQANFISIKGPELL 86 (301)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSS------SHHHHHHHHHHH-TTCEEEEECHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCc------CHHHHHHHHHHH-hCCCEEEEEhHHHH
Confidence 35699999998888776642 1233456889999998 333444444443 111111110
Q ss_pred ------cchhhHHHHHHHHhcCCeEEEEecCCcHHH----------------HHHHhccCCC--CCCCCeEEEEcCChhh
Q 047161 191 ------NDFDGIKMIKRELRRRNVLVVIDDAVHIRQ----------------LNRLAGKHSW--FGSGSRIIIPTRDEHL 246 (720)
Q Consensus 191 ------~~~~~~~~l~~~l~~kr~LlVLDdv~~~~~----------------~~~l~~~~~~--~~~gsrIivTTR~~~v 246 (720)
........+.........+|++|+++.... ...+...+.. ...+-.||.||...+.
T Consensus 87 ~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~~~~ 166 (301)
T 3cf0_A 87 TMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDI 166 (301)
T ss_dssp HHHHTTCTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEESCGGG
T ss_pred hhhcCchHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEecCCccc
Confidence 001112222233345678999999985321 1223222221 1234567777765543
Q ss_pred hhh-----ccccceEecCCCCHHHHHHHHHHHhcCC--CCCchHHHHHHHHHHHhCCCch
Q 047161 247 LRT-----LRVDGVYKVEKLDDDEALELFNKRAFDG--QPSKDYVELIKRIVKYADGLPF 299 (720)
Q Consensus 247 ~~~-----~~~~~~~~l~~L~~~~s~~Lf~~~af~~--~~~~~~~~~~~~i~~~c~glPL 299 (720)
... -..+..+.+...+.++-.+++..+.-.. ....++. .+++.+.|.|-
T Consensus 167 ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~~~----~la~~~~g~sg 222 (301)
T 3cf0_A 167 IDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLE----FLAKMTNGFSG 222 (301)
T ss_dssp SCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCCHH----HHHHTCSSCCH
T ss_pred cChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccchHH----HHHHHcCCCCH
Confidence 221 1345688999999999899887765433 2222333 34445666653
No 211
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=92.03 E-value=0.88 Score=45.89 Aligned_cols=138 Identities=15% Similarity=0.152 Sum_probs=74.7
Q ss_pred ccccchhHHHHHHhhhc--cCCCeEEEEEecCCCccccc------------------------------hhcHHHHHHHH
Q 047161 130 LVEMNSRLKKLRLLLDA--ESRDVRMIGICGMGGVELSE------------------------------KDGLIALQKQL 177 (720)
Q Consensus 130 ~vG~~~~~~~i~~~L~~--~~~~~~vi~I~G~gGi~vs~------------------------------~~~~~~~~~~i 177 (720)
+.|||+++++|...|.. .......+-|+|..|.+.+. ..+...+...|
T Consensus 22 L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I 101 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKI 101 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHH
Confidence 78999999999877752 34556677899999982111 01222344455
Q ss_pred HHhhhhcccceeccchhhHHHHHHHH------hcCCeEEEEecCCcH---HHHHHHhccCCCCCCCCe--EEEEcCChhh
Q 047161 178 LSKTLMEIDIEIRNDFDGIKMIKREL------RRRNVLVVIDDAVHI---RQLNRLAGKHSWFGSGSR--IIIPTRDEHL 246 (720)
Q Consensus 178 l~~~~~~~~~~~~~~~~~~~~l~~~l------~~kr~LlVLDdv~~~---~~~~~l~~~~~~~~~gsr--IivTTR~~~v 246 (720)
.+++.+. .... ......+++.+ +++++++|||+++.. +.+..+..... ...|+ ||.++...+.
T Consensus 102 ~~~L~g~-~~~~---~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~~~~--~~~s~~~vI~i~n~~d~ 175 (318)
T 3te6_A 102 WFAISKE-NLCG---DISLEALNFYITNVPKAKKRKTLILIQNPENLLSEKILQYFEKWIS--SKNSKLSIICVGGHNVT 175 (318)
T ss_dssp HHHHSCC-C--C---CCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSCCTHHHHHHHHHHH--CSSCCEEEEEECCSSCC
T ss_pred HHHhcCC-CCCc---hHHHHHHHHHHHHhhhccCCceEEEEecHHHhhcchHHHHHHhccc--ccCCcEEEEEEecCccc
Confidence 5553221 1111 11222333332 356789999999864 22322222100 12343 3344544322
Q ss_pred ---------hhhccccceEecCCCCHHHHHHHHHHHh
Q 047161 247 ---------LRTLRVDGVYKVEKLDDDEALELFNKRA 274 (720)
Q Consensus 247 ---------~~~~~~~~~~~l~~L~~~~s~~Lf~~~a 274 (720)
...++. ..+..++.+.+|-.+++.+.+
T Consensus 176 ~~~~L~~~v~SR~~~-~~i~F~pYt~~el~~Il~~Rl 211 (318)
T 3te6_A 176 IREQINIMPSLKAHF-TEIKLNKVDKNELQQMIITRL 211 (318)
T ss_dssp CHHHHHTCHHHHTTE-EEEECCCCCHHHHHHHHHHHH
T ss_pred chhhcchhhhccCCc-eEEEeCCCCHHHHHHHHHHHH
Confidence 222321 368899999999999887765
No 212
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=91.90 E-value=4 Score=43.36 Aligned_cols=166 Identities=14% Similarity=0.103 Sum_probs=92.8
Q ss_pred CCCCccccchhHHHHHHhhhc----------cCCCeEEEEEecCCCccccchhcHHHHHHHHHHhhhhcccceec-----
Q 047161 126 ILDDLVEMNSRLKKLRLLLDA----------ESRDVRMIGICGMGGVELSEKDGLIALQKQLLSKTLMEIDIEIR----- 190 (720)
Q Consensus 126 ~~~~~vG~~~~~~~i~~~L~~----------~~~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~~~~~~~----- 190 (720)
..++++|.+..++.+.+.+.. .....+-|-++|..|. +...+.+.+...+.........
T Consensus 132 ~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGt------GKT~lA~aia~~~~~~~~~~v~~~~l~ 205 (444)
T 2zan_A 132 KWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGT------GKSYLAKAVATEANNSTFFSISSSDLV 205 (444)
T ss_dssp CGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTS------SHHHHHHHHHHHCCSSEEEEECCC---
T ss_pred CHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCC------CHHHHHHHHHHHcCCCCEEEEeHHHHH
Confidence 446799999999988876521 1123466889999998 4445555555542111111110
Q ss_pred -----cchhhHHHHHHHH-hcCCeEEEEecCCcH-------------HHHHHHhccCCCC---CCCCeEEEEcCChhhhh
Q 047161 191 -----NDFDGIKMIKREL-RRRNVLVVIDDAVHI-------------RQLNRLAGKHSWF---GSGSRIIIPTRDEHLLR 248 (720)
Q Consensus 191 -----~~~~~~~~l~~~l-~~kr~LlVLDdv~~~-------------~~~~~l~~~~~~~---~~gsrIivTTR~~~v~~ 248 (720)
........+.... ..+..+|++|+++.. .....+...+... ..+-.||.||.......
T Consensus 206 ~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~vI~atn~~~~ld 285 (444)
T 2zan_A 206 SKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLD 285 (444)
T ss_dssp ------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCEEEEEESCGGGSC
T ss_pred hhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEEEEecCCCccccC
Confidence 0111222233332 357789999999854 2234444444332 34556776776543211
Q ss_pred h---ccccceEecCCCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHhCCCc
Q 047161 249 T---LRVDGVYKVEKLDDDEALELFNKRAFDGQPSKDYVELIKRIVKYADGLP 298 (720)
Q Consensus 249 ~---~~~~~~~~l~~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~i~~~c~glP 298 (720)
. -..+..+.+...+.++-.++|..++-.....-. ......+++.+.|..
T Consensus 286 ~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~-~~~l~~la~~t~G~s 337 (444)
T 2zan_A 286 SAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSLT-EADFQELGRKTDGYS 337 (444)
T ss_dssp HHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEECC-HHHHHHHHHHTTTCC
T ss_pred HHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCCCC-HHHHHHHHHHcCCCC
Confidence 1 134557888999999999999887644311001 123356777787753
No 213
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=90.00 E-value=3.5 Score=44.37 Aligned_cols=159 Identities=15% Similarity=0.160 Sum_probs=87.2
Q ss_pred CCccccchhHHHHHHhhhcc-----------CCCeEEEEEecCCCccccchhcHHHHHHHHHHhhhhcccceec------
Q 047161 128 DDLVEMNSRLKKLRLLLDAE-----------SRDVRMIGICGMGGVELSEKDGLIALQKQLLSKTLMEIDIEIR------ 190 (720)
Q Consensus 128 ~~~vG~~~~~~~i~~~L~~~-----------~~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~~~~~~~------ 190 (720)
.+++|.+..++++.+++... ....+-|-|+|..|. +...+.+.+... .+.......
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGt------GKT~lAraia~~-~~~~fv~vn~~~l~~ 276 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGT------GKTLIARAVANE-TGAFFFLINGPEIMS 276 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTS------SHHHHHHHHHHH-CSSEEEEEEHHHHHT
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCC------CHHHHHHHHHHH-hCCCEEEEEchHhhh
Confidence 46999999999998877421 233445789999999 444444444443 211111110
Q ss_pred -----cchhhHHHHHHHHhcCCeEEEEecCCcH-------------HHHHHHhccCCC--CCCCCeEEEEcCChhh----
Q 047161 191 -----NDFDGIKMIKRELRRRNVLVVIDDAVHI-------------RQLNRLAGKHSW--FGSGSRIIIPTRDEHL---- 246 (720)
Q Consensus 191 -----~~~~~~~~l~~~l~~kr~LlVLDdv~~~-------------~~~~~l~~~~~~--~~~gsrIivTTR~~~v---- 246 (720)
........+...-.++..+|+||+++.. .....|...+.. ...+-+||.||....-
T Consensus 277 ~~~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~~~Ld~a 356 (489)
T 3hu3_A 277 KLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPA 356 (489)
T ss_dssp SCTTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCGGGBCGG
T ss_pred hhcchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecCCccccCHH
Confidence 0011122233333567789999999421 112223322221 1234466667765432
Q ss_pred -hhhccccceEecCCCCHHHHHHHHHHHhcCC--CCCchHHHHHHHHHHHhCCC
Q 047161 247 -LRTLRVDGVYKVEKLDDDEALELFNKRAFDG--QPSKDYVELIKRIVKYADGL 297 (720)
Q Consensus 247 -~~~~~~~~~~~l~~L~~~~s~~Lf~~~af~~--~~~~~~~~~~~~i~~~c~gl 297 (720)
.+.......+.+...+.++-.+++..++-.. ....++. ++++++.|.
T Consensus 357 l~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~~l~----~la~~t~g~ 406 (489)
T 3hu3_A 357 LRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLE----QVANETHGH 406 (489)
T ss_dssp GGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTTCCHH----HHHHTCTTC
T ss_pred HhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcchhhHH----HHHHHccCC
Confidence 2212345578999999999999998876443 2222333 345556664
No 214
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=88.34 E-value=10 Score=38.32 Aligned_cols=95 Identities=19% Similarity=0.134 Sum_probs=63.6
Q ss_pred cCCeEEEEecCCc--HHHHHHHhccCCCCCCCCeEEEEcCCh-hhhhhccc-cceEecCCCCHHHHHHHHHHHhcCCCCC
Q 047161 205 RRNVLVVIDDAVH--IRQLNRLAGKHSWFGSGSRIIIPTRDE-HLLRTLRV-DGVYKVEKLDDDEALELFNKRAFDGQPS 280 (720)
Q Consensus 205 ~kr~LlVLDdv~~--~~~~~~l~~~~~~~~~gsrIivTTR~~-~v~~~~~~-~~~~~l~~L~~~~s~~Lf~~~af~~~~~ 280 (720)
+++-++|+|+++. .+..+.|...+....++..+|++|.+. .+...... -..+++++++.++..+.+.+.+ . ..
T Consensus 107 ~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~--~-~~ 183 (334)
T 1a5t_A 107 GGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRCRLHYLAPPPEQYAVTWLSREV--T-MS 183 (334)
T ss_dssp SSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHC--C-CC
T ss_pred CCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHhhcceeeeCCCCCHHHHHHHHHHhc--C-CC
Confidence 5677899999985 344566666665555667777777654 33332211 2378999999999999888765 1 11
Q ss_pred chHHHHHHHHHHHhCCCchHHHHhh
Q 047161 281 KDYVELIKRIVKYADGLPFALETLG 305 (720)
Q Consensus 281 ~~~~~~~~~i~~~c~glPLai~~~g 305 (720)
.+....+++.++|.|..+..+.
T Consensus 184 ---~~~~~~l~~~s~G~~r~a~~~l 205 (334)
T 1a5t_A 184 ---QDALLAALRLSAGSPGAALALF 205 (334)
T ss_dssp ---HHHHHHHHHHTTTCHHHHHHTT
T ss_pred ---HHHHHHHHHHcCCCHHHHHHHh
Confidence 2334678899999997665543
No 215
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=88.03 E-value=10 Score=38.46 Aligned_cols=163 Identities=13% Similarity=0.112 Sum_probs=89.6
Q ss_pred CCccccchhHHHHHHhhhccCCCeEEEEEecCCCccccchhcHHHHHHHHHHhhhhcc------cceec---cchhhHHH
Q 047161 128 DDLVEMNSRLKKLRLLLDAESRDVRMIGICGMGGVELSEKDGLIALQKQLLSKTLMEI------DIEIR---NDFDGIKM 198 (720)
Q Consensus 128 ~~~vG~~~~~~~i~~~L~~~~~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~~------~~~~~---~~~~~~~~ 198 (720)
.+++|.+..++.+...+.. +++..+.++|..|.+.+ .+.+.+...+.... ..+.. ..+...+.
T Consensus 25 ~~~~g~~~~~~~L~~~i~~--g~~~~~ll~Gp~G~GKT------tla~~la~~l~~~~~~~~~~~~~~~~~~~~~~ir~~ 96 (340)
T 1sxj_C 25 DEVYGQNEVITTVRKFVDE--GKLPHLLFYGPPGTGKT------STIVALAREIYGKNYSNMVLELNASDDRGIDVVRNQ 96 (340)
T ss_dssp GGCCSCHHHHHHHHHHHHT--TCCCCEEEECSSSSSHH------HHHHHHHHHHHTTSHHHHEEEECTTSCCSHHHHHTH
T ss_pred HHhcCcHHHHHHHHHHHhc--CCCceEEEECCCCCCHH------HHHHHHHHHHcCCCccceEEEEcCcccccHHHHHHH
Confidence 4578888778888777753 33334889999999443 33444444321110 00111 11112222
Q ss_pred HHHHHh------cCCeEEEEecCCc--HHHHHHHhccCCCCCCCCeEEEEcCChh-hhhhcc-ccceEecCCCCHHHHHH
Q 047161 199 IKRELR------RRNVLVVIDDAVH--IRQLNRLAGKHSWFGSGSRIIIPTRDEH-LLRTLR-VDGVYKVEKLDDDEALE 268 (720)
Q Consensus 199 l~~~l~------~kr~LlVLDdv~~--~~~~~~l~~~~~~~~~gsrIivTTR~~~-v~~~~~-~~~~~~l~~L~~~~s~~ 268 (720)
+....+ +.+-++|+|+++. .+..+.+...+.......++|++|.... +..... --..+++.+++.++..+
T Consensus 97 i~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR~~~~~~~~l~~~~~~~ 176 (340)
T 1sxj_C 97 IKDFASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCTRFRFQPLPQEAIER 176 (340)
T ss_dssp HHHHHHBCCSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHH
T ss_pred HHHHHhhcccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhhceeEeccCCCHHHHHH
Confidence 222221 2367889999864 3444555444433345667777765432 211111 11368899999999888
Q ss_pred HHHHHhcCC--CCCchHHHHHHHHHHHhCCCchHH
Q 047161 269 LFNKRAFDG--QPSKDYVELIKRIVKYADGLPFAL 301 (720)
Q Consensus 269 Lf~~~af~~--~~~~~~~~~~~~i~~~c~glPLai 301 (720)
.+...+-.. ... .+....+++.++|-+-.+
T Consensus 177 ~l~~~~~~~~~~i~---~~~~~~i~~~s~G~~r~~ 208 (340)
T 1sxj_C 177 RIANVLVHEKLKLS---PNAEKALIELSNGDMRRV 208 (340)
T ss_dssp HHHHHHHTTTCCBC---HHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHH
Confidence 877655222 222 234567888889987643
No 216
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=88.01 E-value=0.51 Score=43.87 Aligned_cols=90 Identities=20% Similarity=0.174 Sum_probs=48.0
Q ss_pred CCCCceeeecCCCCCCCCCCCCcccCccchhhhHHHHhccCCCCcEEeccCCCCCcc----cCCCCCCCCCCCEEeccCC
Q 047161 455 GAPNLEELILDGCKRLQNCTSLTTLPREIATESLQKLIELLTGLVFLNLNDCKILVR----LPSTINGWKSLRTVNLSRC 530 (720)
Q Consensus 455 ~l~~L~~L~L~~~~~l~~~~~L~~lp~~~~~~~l~~~i~~l~~L~~L~Ls~n~~~~~----lp~~i~~l~~L~~L~L~~~ 530 (720)
.-+.|+.|+|++|..+ .+. ....+-..+..-++|+.|+|++|.+... +-+.+..-+.|++|+|++|
T Consensus 39 ~n~~L~~L~L~~nn~i---------gd~-ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N 108 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRV---------SKE-RIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESN 108 (197)
T ss_dssp TCSSCCEEECTTCCSS---------CHH-HHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSS
T ss_pred cCCCccEEECCCCCCC---------CHH-HHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCC
Confidence 4457777888765322 111 1112333355567788888887774322 1222234466777777777
Q ss_pred CCCcc----cCcCcCCCCCCCEEeccCc
Q 047161 531 SKLEN----MPESLGQMESLEELDVSGT 554 (720)
Q Consensus 531 ~~l~~----lp~~~~~L~~L~~L~L~~n 554 (720)
.+... +-+.+..-+.|++|+|++|
T Consensus 109 ~Ig~~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 109 FLTPELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp BCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred cCCHHHHHHHHHHHhhCCceeEEECCCC
Confidence 54421 2223444455777777654
No 217
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=87.30 E-value=0.27 Score=45.75 Aligned_cols=90 Identities=18% Similarity=0.193 Sum_probs=59.8
Q ss_pred hHHHHhccCCCCcEEeccCCCCCc-----ccCCCCCCCCCCCEEeccCCCCCcc----cCcCcCCCCCCCEEeccCcccc
Q 047161 487 SLQKLIELLTGLVFLNLNDCKILV-----RLPSTINGWKSLRTVNLSRCSKLEN----MPESLGQMESLEELDVSGTVIR 557 (720)
Q Consensus 487 ~l~~~i~~l~~L~~L~Ls~n~~~~-----~lp~~i~~l~~L~~L~L~~~~~l~~----lp~~~~~L~~L~~L~L~~n~l~ 557 (720)
.+...+.+-+.|+.|+|++|+.++ .+-+.+..-+.|+.|+|++|.+... +.+.+..-+.|++|+|+.|.|.
T Consensus 32 ~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 32 CINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT 111 (197)
T ss_dssp HHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred HHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence 344446667899999999862233 2334455678999999999976532 2233445578999999999987
Q ss_pred cCC-----ccccCCcCCceEEEeec
Q 047161 558 QPV-----PSIFFPSRILKVYLFVD 577 (720)
Q Consensus 558 ~~~-----~~~~~~~~~L~~L~l~~ 577 (720)
..- ...... +.|+.|++.+
T Consensus 112 ~~Ga~ala~aL~~N-~tL~~L~L~n 135 (197)
T 1pgv_A 112 PELLARLLRSTLVT-QSIVEFKADN 135 (197)
T ss_dssp HHHHHHHHHHTTTT-CCCSEEECCC
T ss_pred HHHHHHHHHHHhhC-CceeEEECCC
Confidence 421 112223 6788888854
No 218
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=84.40 E-value=2.5 Score=36.93 Aligned_cols=108 Identities=14% Similarity=0.053 Sum_probs=54.0
Q ss_pred CccccchhHHHHHHhhhccCCCeEEEEEecCCCccccchhcHHHHHHHHHHhhhhc--ccc-eeccchhhHHHHHHHH-h
Q 047161 129 DLVEMNSRLKKLRLLLDAESRDVRMIGICGMGGVELSEKDGLIALQKQLLSKTLME--IDI-EIRNDFDGIKMIKREL-R 204 (720)
Q Consensus 129 ~~vG~~~~~~~i~~~L~~~~~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~--~~~-~~~~~~~~~~~l~~~l-~ 204 (720)
++||.+..++++.+.+..-...-.-|-|+|..|. +...+.+.+-...... ... +....... ......+ .
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~Gt------GKt~lA~~i~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~ 74 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGT------GRMTGARYLHQFGRNAQGEFVYRELTPDNA-PQLNDFIAL 74 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTS------SHHHHHHHHHHSSTTTTSCCEEEECCTTTS-SCHHHHHHH
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCC------CHHHHHHHHHHhCCccCCCEEEECCCCCcc-hhhhcHHHH
Confidence 5789999999988877532222233569999998 4444444444331110 101 11111110 1111111 2
Q ss_pred cCCeEEEEecCCcH--HHHHHHhccCCCCCCCCeEEEEcCC
Q 047161 205 RRNVLVVIDDAVHI--RQLNRLAGKHSWFGSGSRIIIPTRD 243 (720)
Q Consensus 205 ~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIivTTR~ 243 (720)
.+.-.|++|+++.. +....+...+.......+||.||..
T Consensus 75 a~~g~l~ldei~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~ 115 (145)
T 3n70_A 75 AQGGTLVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDT 115 (145)
T ss_dssp HTTSCEEEECGGGSCHHHHHHHHHHHHSSSCSSCEEEEESS
T ss_pred cCCcEEEEcChHHCCHHHHHHHHHHHhhcCCCEEEEEECCc
Confidence 24467899999854 3334444433333345677777763
No 219
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=84.27 E-value=1.4 Score=43.07 Aligned_cols=142 Identities=17% Similarity=0.206 Sum_probs=75.3
Q ss_pred CCCCccccchhHHHHHHhhhc----------cCCCeEEEEEecCCCccccchhcHHHHHHHHHHhhhhccccee------
Q 047161 126 ILDDLVEMNSRLKKLRLLLDA----------ESRDVRMIGICGMGGVELSEKDGLIALQKQLLSKTLMEIDIEI------ 189 (720)
Q Consensus 126 ~~~~~vG~~~~~~~i~~~L~~----------~~~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~~~~~~------ 189 (720)
..++++|.+..++.+.+.+.. +....+-|-|+|..|. +...+.+.+.... .......
T Consensus 9 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~Gt------GKT~la~~la~~~-~~~~~~v~~~~~~ 81 (268)
T 2r62_A 9 RFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGT------GKTLLAKAVAGEA-HVPFFSMGGSSFI 81 (268)
T ss_dssp CSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCS------SHHHHHHHHHHHH-TCCCCCCCSCTTT
T ss_pred CHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCC------cHHHHHHHHHHHh-CCCEEEechHHHH
Confidence 346799999998888776531 1111223679999998 3444444444442 1111100
Q ss_pred -----ccchhhHHHHHHHHhcCCeEEEEecCCcHH-----------------HHHHHhccCCCCC---CCCeEEEEcCCh
Q 047161 190 -----RNDFDGIKMIKRELRRRNVLVVIDDAVHIR-----------------QLNRLAGKHSWFG---SGSRIIIPTRDE 244 (720)
Q Consensus 190 -----~~~~~~~~~l~~~l~~kr~LlVLDdv~~~~-----------------~~~~l~~~~~~~~---~gsrIivTTR~~ 244 (720)
.........+......+..+|++||++... ....+...+.... ..-.||.||...
T Consensus 82 ~~~~~~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~ 161 (268)
T 2r62_A 82 EMFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRP 161 (268)
T ss_dssp TSCSSSCSSSSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCSCCEEEECBSCC
T ss_pred HhhcchHHHHHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCCCEEEEEecCCc
Confidence 000111122233334567899999996531 1222333332211 124567777655
Q ss_pred hhh-----hhccccceEecCCCCHHHHHHHHHHHh
Q 047161 245 HLL-----RTLRVDGVYKVEKLDDDEALELFNKRA 274 (720)
Q Consensus 245 ~v~-----~~~~~~~~~~l~~L~~~~s~~Lf~~~a 274 (720)
... +.......+.++..+.++-.+++...+
T Consensus 162 ~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~ 196 (268)
T 2r62_A 162 EILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHI 196 (268)
T ss_dssp TTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHT
T ss_pred hhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHH
Confidence 422 111334567888888888888887655
No 220
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=83.40 E-value=3.7 Score=37.03 Aligned_cols=46 Identities=22% Similarity=0.263 Sum_probs=32.2
Q ss_pred CCCccccchhHHHHHHhhhccCCCeEEEEEecCCCccccchhcHHHHHHHHHHh
Q 047161 127 LDDLVEMNSRLKKLRLLLDAESRDVRMIGICGMGGVELSEKDGLIALQKQLLSK 180 (720)
Q Consensus 127 ~~~~vG~~~~~~~i~~~L~~~~~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~ 180 (720)
...++|++..++.+.+.+.. ...+.+-|+|..|++ ...+.+.+...
T Consensus 21 ~~~~~g~~~~~~~l~~~l~~--~~~~~vll~G~~G~G------KT~la~~~~~~ 66 (187)
T 2p65_A 21 LDPVIGRDTEIRRAIQILSR--RTKNNPILLGDPGVG------KTAIVEGLAIK 66 (187)
T ss_dssp SCCCCSCHHHHHHHHHHHTS--SSSCEEEEESCGGGC------HHHHHHHHHHH
T ss_pred cchhhcchHHHHHHHHHHhC--CCCCceEEECCCCCC------HHHHHHHHHHH
Confidence 35699999999999988854 334456799999993 34444444444
No 221
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=83.16 E-value=16 Score=38.46 Aligned_cols=161 Identities=14% Similarity=0.204 Sum_probs=92.4
Q ss_pred CCCccccchhHHHHHHhhhc-----------cCCCeEEEEEecCCCccccchhcHHHHHHHHHHhhhhccccee------
Q 047161 127 LDDLVEMNSRLKKLRLLLDA-----------ESRDVRMIGICGMGGVELSEKDGLIALQKQLLSKTLMEIDIEI------ 189 (720)
Q Consensus 127 ~~~~vG~~~~~~~i~~~L~~-----------~~~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~~~~~~------ 189 (720)
-+++.|.++.+++|.+.+.. +-...+=|-++|.+|. +...+.+.+..+. +..-...
T Consensus 180 ~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGT------GKTllAkAiA~e~-~~~f~~v~~s~l~ 252 (434)
T 4b4t_M 180 YSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGT------GKTLLARACAAQT-NATFLKLAAPQLV 252 (434)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTS------SHHHHHHHHHHHH-TCEEEEEEGGGGC
T ss_pred hHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCC------CHHHHHHHHHHHh-CCCEEEEehhhhh
Confidence 36789999999998765421 2233456779999998 4555566666552 2111111
Q ss_pred -ccchhhHHHHHHHH----hcCCeEEEEecCCcHH----------------HHHHHhccCCCCCC--CCeEEEEcCChhh
Q 047161 190 -RNDFDGIKMIKREL----RRRNVLVVIDDAVHIR----------------QLNRLAGKHSWFGS--GSRIIIPTRDEHL 246 (720)
Q Consensus 190 -~~~~~~~~~l~~~l----~~kr~LlVLDdv~~~~----------------~~~~l~~~~~~~~~--gsrIivTTR~~~v 246 (720)
....+....++..+ ....++|.+|+++... ....+...+..+.. |-.||.||...+.
T Consensus 253 ~~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTNrp~~ 332 (434)
T 4b4t_M 253 QMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVDV 332 (434)
T ss_dssp SSCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEECSSCCC
T ss_pred hcccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEEEEeCCCchh
Confidence 11112223333333 3578999999986421 12234444443332 3345667765544
Q ss_pred hh-----hccccceEecCCCCHHHHHHHHHHHhcCC--CCCchHHHHHHHHHHHhCCCc
Q 047161 247 LR-----TLRVDGVYKVEKLDDDEALELFNKRAFDG--QPSKDYVELIKRIVKYADGLP 298 (720)
Q Consensus 247 ~~-----~~~~~~~~~l~~L~~~~s~~Lf~~~af~~--~~~~~~~~~~~~i~~~c~glP 298 (720)
.. .-..+..+++...+.++-.++|..+.-+. ...-++. .+++.+.|+-
T Consensus 333 LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl~----~lA~~t~G~s 387 (434)
T 4b4t_M 333 LDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINWQ----ELARSTDEFN 387 (434)
T ss_dssp CCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCCHH----HHHHHCSSCC
T ss_pred cCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCCHH----HHHHhCCCCC
Confidence 32 22467788999999999999998765433 2333443 4556666653
No 222
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=82.81 E-value=16 Score=41.74 Aligned_cols=137 Identities=18% Similarity=0.197 Sum_probs=75.7
Q ss_pred CCCccccchhHHHHHHhhhccCCCeEEEEEecCCCccccchhcHHHHHHHHHHhhhhcc------ccee-----------
Q 047161 127 LDDLVEMNSRLKKLRLLLDAESRDVRMIGICGMGGVELSEKDGLIALQKQLLSKTLMEI------DIEI----------- 189 (720)
Q Consensus 127 ~~~~vG~~~~~~~i~~~L~~~~~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~~------~~~~----------- 189 (720)
.+.++|++..++++.+.|... ...-+-|+|..|++ ...+.+.+...+.... ....
T Consensus 185 ~d~~iGr~~~i~~l~~~l~~~--~~~~vlL~G~~GtG------KT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~~~ 256 (758)
T 1r6b_X 185 IDPLIGREKELERAIQVLCRR--RKNNPLLVGESGVG------KTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAG 256 (758)
T ss_dssp SCCCCSCHHHHHHHHHHHTSS--SSCEEEEECCTTSS------HHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---CC
T ss_pred CCCccCCHHHHHHHHHHHhcc--CCCCeEEEcCCCCC------HHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHhcc
Confidence 357999999999999988543 22335689999994 3344444444321100 0000
Q ss_pred ----ccchhhHHHHHHHHh-cCCeEEEEecCCcH----------HH-HHHHhccCCCCCCCCeEEEEcCChhhhhhc---
Q 047161 190 ----RNDFDGIKMIKRELR-RRNVLVVIDDAVHI----------RQ-LNRLAGKHSWFGSGSRIIIPTRDEHLLRTL--- 250 (720)
Q Consensus 190 ----~~~~~~~~~l~~~l~-~kr~LlVLDdv~~~----------~~-~~~l~~~~~~~~~gsrIivTTR~~~v~~~~--- 250 (720)
.........+.+.+. .++.+|++||+... .+ ...+...+. ..+-++|.+|.........
T Consensus 257 ~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~--~~~~~~I~at~~~~~~~~~~~d 334 (758)
T 1r6b_X 257 TKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS--SGKIRVIGSTTYQEFSNIFEKD 334 (758)
T ss_dssp CCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSS--SCCCEEEEEECHHHHHCCCCCT
T ss_pred ccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHh--CCCeEEEEEeCchHHhhhhhcC
Confidence 011111222223332 35789999999743 22 333443333 2344666666544321111
Q ss_pred -----cccceEecCCCCHHHHHHHHHHHh
Q 047161 251 -----RVDGVYKVEKLDDDEALELFNKRA 274 (720)
Q Consensus 251 -----~~~~~~~l~~L~~~~s~~Lf~~~a 274 (720)
... .+.+...+.++..+++...+
T Consensus 335 ~aL~~Rf~-~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 335 RALARRFQ-KIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp TSSGGGEE-EEECCCCCHHHHHHHHHHHH
T ss_pred HHHHhCce-EEEcCCCCHHHHHHHHHHHH
Confidence 112 68899999999988887644
No 223
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=81.25 E-value=8.8 Score=38.30 Aligned_cols=132 Identities=18% Similarity=0.147 Sum_probs=76.0
Q ss_pred chhHHHHHHhhhccCCCeEEEEEecCCCccccchhcHHHHHHHHHHhh--hh--cccceecc---chhhHHHHH---HHH
Q 047161 134 NSRLKKLRLLLDAESRDVRMIGICGMGGVELSEKDGLIALQKQLLSKT--LM--EIDIEIRN---DFDGIKMIK---REL 203 (720)
Q Consensus 134 ~~~~~~i~~~L~~~~~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~--~~--~~~~~~~~---~~~~~~~l~---~~l 203 (720)
+..++.+.+.+..+. ...+-++|..|... ..+...+.... .. ..+....+ ....++.++ +..
T Consensus 3 ~~~~~~L~~~i~~~~--~~~~Lf~Gp~G~GK------tt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~id~ir~li~~~ 74 (305)
T 2gno_A 3 KDQLETLKRIIEKSE--GISILINGEDLSYP------REVSLELPEYVEKFPPKASDVLEIDPEGENIGIDDIRTIKDFL 74 (305)
T ss_dssp -CHHHHHHHHHHTCS--SEEEEEECSSSSHH------HHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCC--CcEEEEECCCCCCH------HHHHHHHHHhCchhhccCCCEEEEcCCcCCCCHHHHHHHHHHH
Confidence 344556666654333 66788999999833 23333333321 10 01111111 122333333 333
Q ss_pred h-----cCCeEEEEecCCc--HHHHHHHhccCCCCCCCCeEEEEcCC-hhhhhhccccceEecCCCCHHHHHHHHHHHh
Q 047161 204 R-----RRNVLVVIDDAVH--IRQLNRLAGKHSWFGSGSRIIIPTRD-EHLLRTLRVDGVYKVEKLDDDEALELFNKRA 274 (720)
Q Consensus 204 ~-----~kr~LlVLDdv~~--~~~~~~l~~~~~~~~~gsrIivTTR~-~~v~~~~~~~~~~~l~~L~~~~s~~Lf~~~a 274 (720)
. +++-++|+|+++. ....+.|...+....+.+++|++|.+ ..+....... .+++++++.++..+.+.+.+
T Consensus 75 ~~~p~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR-~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 75 NYSPELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR-VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp TSCCSSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-SEEEECCCCHHHHHHHHHHH
T ss_pred hhccccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce-eEeCCCCCHHHHHHHHHHHh
Confidence 2 4566889999985 34566666666555567787776644 3555555555 89999999999999887765
No 224
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=81.17 E-value=3 Score=37.81 Aligned_cols=85 Identities=16% Similarity=0.137 Sum_probs=40.8
Q ss_pred eEEEEEecCCCccccchhcHHHHHHHHHHhhhhccc--ceeccchhhHHHHH------------HHHhcCCeEEEEecCC
Q 047161 151 VRMIGICGMGGVELSEKDGLIALQKQLLSKTLMEID--IEIRNDFDGIKMIK------------RELRRRNVLVVIDDAV 216 (720)
Q Consensus 151 ~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~~~--~~~~~~~~~~~~l~------------~~l~~kr~LlVLDdv~ 216 (720)
-..+.|+|..|.+ ...+.+.+...+..... .-..+..+....+. +.+. +.-+|||||++
T Consensus 38 g~~~~l~G~~G~G------KTtL~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~llilDE~~ 110 (180)
T 3ec2_A 38 GKGLTFVGSPGVG------KTHLAVATLKAIYEKKGIRGYFFDTKDLIFRLKHLMDEGKDTKFLKTVL-NSPVLVLDDLG 110 (180)
T ss_dssp CCEEEECCSSSSS------HHHHHHHHHHHHHHHSCCCCCEEEHHHHHHHHHHHHHHTCCSHHHHHHH-TCSEEEEETCS
T ss_pred CCEEEEECCCCCC------HHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHhcCchHHHHHHHhc-CCCEEEEeCCC
Confidence 4678999999994 33444444444221111 11112222222222 2222 45689999997
Q ss_pred c--HHHHH--HHhccCCC-CCCCCeEEEEcC
Q 047161 217 H--IRQLN--RLAGKHSW-FGSGSRIIIPTR 242 (720)
Q Consensus 217 ~--~~~~~--~l~~~~~~-~~~gsrIivTTR 242 (720)
. .+.|. .+...+.. ...|..||+||.
T Consensus 111 ~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn 141 (180)
T 3ec2_A 111 SERLSDWQRELISYIITYRYNNLKSTIITTN 141 (180)
T ss_dssp SSCCCHHHHHHHHHHHHHHHHTTCEEEEECC
T ss_pred CCcCCHHHHHHHHHHHHHHHHcCCCEEEEcC
Confidence 2 22221 22221111 125678888886
No 225
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=80.75 E-value=30 Score=33.09 Aligned_cols=142 Identities=15% Similarity=0.152 Sum_probs=73.0
Q ss_pred CCCCccccchhHHHHHHhhhc---c-------CCCeEEEEEecCCCccccchhcHHHHHHHHHHhhhhcccceec--c--
Q 047161 126 ILDDLVEMNSRLKKLRLLLDA---E-------SRDVRMIGICGMGGVELSEKDGLIALQKQLLSKTLMEIDIEIR--N-- 191 (720)
Q Consensus 126 ~~~~~vG~~~~~~~i~~~L~~---~-------~~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~~~~~~~--~-- 191 (720)
..++++|.+..++++.+++.. . ..-.+-|.|+|..|.+ ...+.+.+.... ........ +
T Consensus 10 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtG------KT~la~~la~~~-~~~~~~i~~~~~~ 82 (257)
T 1lv7_A 10 TFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTG------KTLLAKAIAGEA-KVPFFTISGSDFV 82 (257)
T ss_dssp CGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSC------HHHHHHHHHHHH-TCCEEEECSCSST
T ss_pred CHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCC------HHHHHHHHHHHc-CCCEEEEeHHHHH
Confidence 446799999888887665421 0 0112347799999994 334444444432 11111110 0
Q ss_pred ---chhhHHHHH----HHHhcCCeEEEEecCCcH----------------HHHHHHhccCCC--CCCCCeEEEEcCChhh
Q 047161 192 ---DFDGIKMIK----RELRRRNVLVVIDDAVHI----------------RQLNRLAGKHSW--FGSGSRIIIPTRDEHL 246 (720)
Q Consensus 192 ---~~~~~~~l~----~~l~~kr~LlVLDdv~~~----------------~~~~~l~~~~~~--~~~gsrIivTTR~~~v 246 (720)
.......++ ........++++|+++.. .....+...+.. ...+-.||.||...+.
T Consensus 83 ~~~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~ 162 (257)
T 1lv7_A 83 EMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDV 162 (257)
T ss_dssp TSCCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEESCTTT
T ss_pred HHhhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCEEEEEeeCCchh
Confidence 011112222 222345679999998432 112223222221 1234567777765432
Q ss_pred h-hhc----cccceEecCCCCHHHHHHHHHHHh
Q 047161 247 L-RTL----RVDGVYKVEKLDDDEALELFNKRA 274 (720)
Q Consensus 247 ~-~~~----~~~~~~~l~~L~~~~s~~Lf~~~a 274 (720)
. ... ..+..+.+...+.++-.+++..++
T Consensus 163 l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~ 195 (257)
T 1lv7_A 163 LDPALLRPGRFDRQVVVGLPDVRGREQILKVHM 195 (257)
T ss_dssp SCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHH
T ss_pred CCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHH
Confidence 2 111 235578888888888888887665
No 226
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=79.71 E-value=47 Score=34.36 Aligned_cols=160 Identities=14% Similarity=0.198 Sum_probs=93.4
Q ss_pred CCccccchhHHHHHHhhhc-----------cCCCeEEEEEecCCCccccchhcHHHHHHHHHHhhhhccccee-------
Q 047161 128 DDLVEMNSRLKKLRLLLDA-----------ESRDVRMIGICGMGGVELSEKDGLIALQKQLLSKTLMEIDIEI------- 189 (720)
Q Consensus 128 ~~~vG~~~~~~~i~~~L~~-----------~~~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~~~~~~------- 189 (720)
+++.|.++.+++|.+.+.. +-...+=|-++|.+|. +...+.+.+... .+..-...
T Consensus 148 ~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGT------GKTllAkAiA~e-~~~~f~~v~~s~l~s 220 (405)
T 4b4t_J 148 DMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGT------GKTLLARAVAHH-TDCKFIRVSGAELVQ 220 (405)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSS------SHHHHHHHHHHH-HTCEEEEEEGGGGSC
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCC------CHHHHHHHHHHh-hCCCceEEEhHHhhc
Confidence 5688999999998776531 2223455779999998 555566666655 22211111
Q ss_pred ccchhhHHHHHHHH----hcCCeEEEEecCCcHH----------------HHHHHhccCCCCC--CCCeEEEEcCChhhh
Q 047161 190 RNDFDGIKMIKREL----RRRNVLVVIDDAVHIR----------------QLNRLAGKHSWFG--SGSRIIIPTRDEHLL 247 (720)
Q Consensus 190 ~~~~~~~~~l~~~l----~~kr~LlVLDdv~~~~----------------~~~~l~~~~~~~~--~gsrIivTTR~~~v~ 247 (720)
.-..+....+++.+ ......|.+|+++... ....+...++.+. .+-.||.||...+..
T Consensus 221 k~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNrpd~L 300 (405)
T 4b4t_J 221 KYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDIL 300 (405)
T ss_dssp SSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEESCSSSS
T ss_pred cccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccCChhhC
Confidence 11112233344333 4578999999987320 1233333333222 233567777654442
Q ss_pred -----hhccccceEecCCCCHHHHHHHHHHHhcCC--CCCchHHHHHHHHHHHhCCCc
Q 047161 248 -----RTLRVDGVYKVEKLDDDEALELFNKRAFDG--QPSKDYVELIKRIVKYADGLP 298 (720)
Q Consensus 248 -----~~~~~~~~~~l~~L~~~~s~~Lf~~~af~~--~~~~~~~~~~~~i~~~c~glP 298 (720)
+.-..+..+++...+.++-.++|..+.-+. ....++. .+++.+.|+-
T Consensus 301 DpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvdl~----~lA~~t~G~S 354 (405)
T 4b4t_J 301 DPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINLR----KVAEKMNGCS 354 (405)
T ss_dssp CHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCCHH----HHHHHCCSCC
T ss_pred CHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCCHH----HHHHHCCCCC
Confidence 222567889999999999999998776443 2233443 4566677754
No 227
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=78.49 E-value=30 Score=36.77 Aligned_cols=162 Identities=17% Similarity=0.209 Sum_probs=87.9
Q ss_pred CCCCccccchhHHHHHHhhhc-cC---------CCeEEEEEecCCCccccchhcHHHHHHHHHHhhhhcccceec--c--
Q 047161 126 ILDDLVEMNSRLKKLRLLLDA-ES---------RDVRMIGICGMGGVELSEKDGLIALQKQLLSKTLMEIDIEIR--N-- 191 (720)
Q Consensus 126 ~~~~~vG~~~~~~~i~~~L~~-~~---------~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~~~~~~~--~-- 191 (720)
..++++|.++.++++.++... .. .-.+-|.|+|..|. +...+.+.+.... +....... +
T Consensus 14 ~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGt------GKT~Laraia~~~-~~~f~~is~~~~~ 86 (476)
T 2ce7_A 14 TFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGT------GKTLLARAVAGEA-NVPFFHISGSDFV 86 (476)
T ss_dssp CGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTS------SHHHHHHHHHHHH-TCCEEEEEGGGTT
T ss_pred CHHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCC------CHHHHHHHHHHHc-CCCeeeCCHHHHH
Confidence 345799999988888766531 10 11223779999998 3444444444442 11111110 0
Q ss_pred ---chhhH----HHHHHHHhcCCeEEEEecCCcH----------------HHHHHHhccCCCC--CCCCeEEEEcCChhh
Q 047161 192 ---DFDGI----KMIKRELRRRNVLVVIDDAVHI----------------RQLNRLAGKHSWF--GSGSRIIIPTRDEHL 246 (720)
Q Consensus 192 ---~~~~~----~~l~~~l~~kr~LlVLDdv~~~----------------~~~~~l~~~~~~~--~~gsrIivTTR~~~v 246 (720)
..... ..+.....+...+|++|+++.. .....+...+..+ ..+-.||.||...+.
T Consensus 87 ~~~~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~ 166 (476)
T 2ce7_A 87 ELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDI 166 (476)
T ss_dssp TCCTTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGG
T ss_pred HHHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhh
Confidence 00112 2233333467889999999542 1233333333211 235567777776654
Q ss_pred hhh--c---cccceEecCCCCHHHHHHHHHHHhcCC--CCCchHHHHHHHHHHHhCCCc
Q 047161 247 LRT--L---RVDGVYKVEKLDDDEALELFNKRAFDG--QPSKDYVELIKRIVKYADGLP 298 (720)
Q Consensus 247 ~~~--~---~~~~~~~l~~L~~~~s~~Lf~~~af~~--~~~~~~~~~~~~i~~~c~glP 298 (720)
... . ..+..+.+...+.++-.+++..++-.. .+..++ ..+++.+.|..
T Consensus 167 Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~l----~~la~~t~G~s 221 (476)
T 2ce7_A 167 LDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVNL----EIIAKRTPGFV 221 (476)
T ss_dssp SCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCH----HHHHHTCTTCC
T ss_pred hchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchhhH----HHHHHhcCCCc
Confidence 321 1 345578899989888888887766433 222233 23566777766
No 228
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=77.97 E-value=16 Score=35.26 Aligned_cols=35 Identities=14% Similarity=0.104 Sum_probs=21.6
Q ss_pred CCccccchhHHHHHHhhhccCCCeEEEEEecCCCc
Q 047161 128 DDLVEMNSRLKKLRLLLDAESRDVRMIGICGMGGV 162 (720)
Q Consensus 128 ~~~vG~~~~~~~i~~~L~~~~~~~~vi~I~G~gGi 162 (720)
+.+||.+..+.++.+.+..-...-.-|-|+|..|.
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~Gt 40 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGT 40 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTTSCSCEEEECCTTS
T ss_pred ccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCC
Confidence 45899999988887766432222234669999998
No 229
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=77.77 E-value=43 Score=35.12 Aligned_cols=161 Identities=19% Similarity=0.260 Sum_probs=93.5
Q ss_pred CCCccccchhHHHHHHhhhc-----------cCCCeEEEEEecCCCccccchhcHHHHHHHHHHhhhhccccee------
Q 047161 127 LDDLVEMNSRLKKLRLLLDA-----------ESRDVRMIGICGMGGVELSEKDGLIALQKQLLSKTLMEIDIEI------ 189 (720)
Q Consensus 127 ~~~~vG~~~~~~~i~~~L~~-----------~~~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~~~~~~------ 189 (720)
-+++.|.++.+++|.+.+.. +-.-.+=|-++|..|. +...+.+.+...+ +.....+
T Consensus 180 ~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGt------GKTllAkAiA~e~-~~~~~~v~~s~l~ 252 (437)
T 4b4t_L 180 FDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGT------GKTLLAKAVAATI-GANFIFSPASGIV 252 (437)
T ss_dssp SGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTS------SHHHHHHHHHHHH-TCEEEEEEGGGTC
T ss_pred hhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCC------cHHHHHHHHHHHh-CCCEEEEehhhhc
Confidence 36789999999988776531 2233456779999998 5555666666552 2211111
Q ss_pred -ccchhhHHHHHHHH----hcCCeEEEEecCCcH----------------HHHHHHhccCCCC--CCCCeEEEEcCChhh
Q 047161 190 -RNDFDGIKMIKREL----RRRNVLVVIDDAVHI----------------RQLNRLAGKHSWF--GSGSRIIIPTRDEHL 246 (720)
Q Consensus 190 -~~~~~~~~~l~~~l----~~kr~LlVLDdv~~~----------------~~~~~l~~~~~~~--~~gsrIivTTR~~~v 246 (720)
.-..+....++..+ .....+|.+|+++.. .....+...++.+ ..+-.||.||...+.
T Consensus 253 sk~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~~ 332 (437)
T 4b4t_L 253 DKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDT 332 (437)
T ss_dssp CSSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEESSTTS
T ss_pred cccchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEecCCchh
Confidence 11112223333333 457899999999731 0123333333322 234567778875554
Q ss_pred hhh-----ccccceEecCCCCHHHHHHHHHHHhcCC--CCCchHHHHHHHHHHHhCCCc
Q 047161 247 LRT-----LRVDGVYKVEKLDDDEALELFNKRAFDG--QPSKDYVELIKRIVKYADGLP 298 (720)
Q Consensus 247 ~~~-----~~~~~~~~l~~L~~~~s~~Lf~~~af~~--~~~~~~~~~~~~i~~~c~glP 298 (720)
... -..+..+++...+.++-.++|..+.-+. ....++. .+++.+.|+-
T Consensus 333 LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl~----~lA~~t~G~s 387 (437)
T 4b4t_L 333 LDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFE----AAVKMSDGFN 387 (437)
T ss_dssp SCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCCHH----HHHHTCCSCC
T ss_pred hCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccCHH----HHHHhCCCCC
Confidence 322 2357788999999999999998776544 3333444 4556666654
No 230
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=75.02 E-value=68 Score=33.77 Aligned_cols=160 Identities=14% Similarity=0.205 Sum_probs=91.4
Q ss_pred CCccccchhHHHHHHhhh-----------ccCCCeEEEEEecCCCccccchhcHHHHHHHHHHhhhhccccee-------
Q 047161 128 DDLVEMNSRLKKLRLLLD-----------AESRDVRMIGICGMGGVELSEKDGLIALQKQLLSKTLMEIDIEI------- 189 (720)
Q Consensus 128 ~~~vG~~~~~~~i~~~L~-----------~~~~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~~~~~~------- 189 (720)
+++.|.++.+++|.+.+. .+-.-.+=|-++|..|. +...+.+.+...+ +..-...
T Consensus 209 ~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGT------GKTlLAkAiA~e~-~~~fi~vs~s~L~s 281 (467)
T 4b4t_H 209 SDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGT------GKTLCARAVANRT-DATFIRVIGSELVQ 281 (467)
T ss_dssp SSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTS------SHHHHHHHHHHHH-TCEEEEEEGGGGCC
T ss_pred HHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCC------cHHHHHHHHHhcc-CCCeEEEEhHHhhc
Confidence 578999999999877543 12234556779999998 4445556665552 2111111
Q ss_pred ccchhhHHHHHHHH----hcCCeEEEEecCCcHH----------------HHHHHhccCCCCC--CCCeEEEEcCChhhh
Q 047161 190 RNDFDGIKMIKREL----RRRNVLVVIDDAVHIR----------------QLNRLAGKHSWFG--SGSRIIIPTRDEHLL 247 (720)
Q Consensus 190 ~~~~~~~~~l~~~l----~~kr~LlVLDdv~~~~----------------~~~~l~~~~~~~~--~gsrIivTTR~~~v~ 247 (720)
.-..+....++..+ .....+|++|+++... ....+...+..+. .+-.||.||...+..
T Consensus 282 k~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATNrpd~L 361 (467)
T 4b4t_H 282 KYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNTL 361 (467)
T ss_dssp CSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECSCTTSB
T ss_pred ccCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCcccC
Confidence 11112223333333 4578999999987320 1222333332222 233456677644432
Q ss_pred h-----hccccceEecCCCCHHHHHHHHHHHhcCC--CCCchHHHHHHHHHHHhCCCc
Q 047161 248 R-----TLRVDGVYKVEKLDDDEALELFNKRAFDG--QPSKDYVELIKRIVKYADGLP 298 (720)
Q Consensus 248 ~-----~~~~~~~~~l~~L~~~~s~~Lf~~~af~~--~~~~~~~~~~~~i~~~c~glP 298 (720)
. .-..+..+++...+.++-.++|..+.-+. ....++. .+++.+.|+-
T Consensus 362 DpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl~----~LA~~T~GfS 415 (467)
T 4b4t_H 362 DPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRWE----LISRLCPNST 415 (467)
T ss_dssp CHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCCHH----HHHHHCCSCC
T ss_pred ChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCCHH----HHHHHCCCCC
Confidence 2 22467889999999999999998776443 2233443 4566777754
No 231
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=74.76 E-value=15 Score=41.98 Aligned_cols=140 Identities=14% Similarity=0.186 Sum_probs=74.0
Q ss_pred CCccccchhHHHHHHhhhccC-------CCeEEEEEecCCCccccchhcHHHHHHHHHHhhhhccc-c-ee-----cc-c
Q 047161 128 DDLVEMNSRLKKLRLLLDAES-------RDVRMIGICGMGGVELSEKDGLIALQKQLLSKTLMEID-I-EI-----RN-D 192 (720)
Q Consensus 128 ~~~vG~~~~~~~i~~~L~~~~-------~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~~~-~-~~-----~~-~ 192 (720)
..++|.+..++.+...+.... .....+-++|..|+ +...+.+.+...+..... . .. .. .
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~Gt------GKT~lA~ala~~l~~~~~~~i~i~~s~~~~~~ 564 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGV------GKTELARALAESIFGDEESMIRIDMSEYMEKH 564 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTS------SHHHHHHHHHHHHHSCTTCEEEEEGGGGCSSC
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCC------CHHHHHHHHHHHhcCCCcceEEEechhccccc
Confidence 568999998888877664211 22346889999999 444555555544322111 0 00 00 0
Q ss_pred hhhHHHHHHHHhc-CCeEEEEecCCcH--HHHHHHhccCCC-----------CCCCCeEEEEcCC-----hhh----hhh
Q 047161 193 FDGIKMIKRELRR-RNVLVVIDDAVHI--RQLNRLAGKHSW-----------FGSGSRIIIPTRD-----EHL----LRT 249 (720)
Q Consensus 193 ~~~~~~l~~~l~~-kr~LlVLDdv~~~--~~~~~l~~~~~~-----------~~~gsrIivTTR~-----~~v----~~~ 249 (720)
......+...++. ..-.|+||++... +....|...+.. .....+||+||.. ..+ ...
T Consensus 565 ~~~~~~l~~~~~~~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~~~~~~~~~~~~~~~ 644 (758)
T 3pxi_A 565 STSGGQLTEKVRRKPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGASEKDKVMGELKRA 644 (758)
T ss_dssp CCC---CHHHHHHCSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESSSTTCCHHHHHHHHHH
T ss_pred ccccchhhHHHHhCCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCChhhHHHHHHHHHhh
Confidence 0001223334433 3458899999753 334444433321 1134688898873 111 111
Q ss_pred c------cccceEecCCCCHHHHHHHHHHH
Q 047161 250 L------RVDGVYKVEKLDDDEALELFNKR 273 (720)
Q Consensus 250 ~------~~~~~~~l~~L~~~~s~~Lf~~~ 273 (720)
. ..+.++.+.+++.++-.+++...
T Consensus 645 f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~ 674 (758)
T 3pxi_A 645 FRPEFINRIDEIIVFHSLEKKHLTEIVSLM 674 (758)
T ss_dssp SCHHHHTTSSEEEECC--CHHHHHHHHHHH
T ss_pred CCHHHHhhCCeEEecCCCCHHHHHHHHHHH
Confidence 1 23457889999998888887664
No 232
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=74.28 E-value=10 Score=43.92 Aligned_cols=135 Identities=18% Similarity=0.221 Sum_probs=69.2
Q ss_pred CCCccccchhHHHHHHhhhccCCCeEEEEEecCCCccccchhcHHHHHHHHHHhhhhcc------ccee-----ccc---
Q 047161 127 LDDLVEMNSRLKKLRLLLDAESRDVRMIGICGMGGVELSEKDGLIALQKQLLSKTLMEI------DIEI-----RND--- 192 (720)
Q Consensus 127 ~~~~vG~~~~~~~i~~~L~~~~~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~~------~~~~-----~~~--- 192 (720)
.+.+|||+..++++...+... ...-+.++|..|+ +...+.+.+...+.... .... ...
T Consensus 169 ld~viGr~~~i~~l~~~l~~~--~~~~vlL~G~pG~------GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~g 240 (854)
T 1qvr_A 169 LDPVIGRDEEIRRVIQILLRR--TKNNPVLIGEPGV------GKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAG 240 (854)
T ss_dssp SCCCCSCHHHHHHHHHHHHCS--SCCCCEEEECTTS------CHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC------
T ss_pred CcccCCcHHHHHHHHHHHhcC--CCCceEEEcCCCC------CHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhcc
Confidence 356999999999999988543 2234578999999 34444444444431100 0000 000
Q ss_pred -------hhhHHHHHHHHh--cCCeEEEEecCCcHHH-------H---HHHhccCCCCCCCCeEEEEcCChhhh-----h
Q 047161 193 -------FDGIKMIKRELR--RRNVLVVIDDAVHIRQ-------L---NRLAGKHSWFGSGSRIIIPTRDEHLL-----R 248 (720)
Q Consensus 193 -------~~~~~~l~~~l~--~kr~LlVLDdv~~~~~-------~---~~l~~~~~~~~~gsrIivTTR~~~v~-----~ 248 (720)
......+.+.+. +++.+|++|++..... + +.+...+. ..+-++|.+|...... .
T Consensus 241 ~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~--~~~i~~I~at~~~~~~~~~~d~ 318 (854)
T 1qvr_A 241 AKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALA--RGELRLIGATTLDEYREIEKDP 318 (854)
T ss_dssp -----CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHH--TTCCCEEEEECHHHHHHHTTCT
T ss_pred CccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHh--CCCeEEEEecCchHHhhhccCH
Confidence 011122222232 3678999999976431 1 12222221 1233456555433221 1
Q ss_pred hc--cccceEecCCCCHHHHHHHHHH
Q 047161 249 TL--RVDGVYKVEKLDDDEALELFNK 272 (720)
Q Consensus 249 ~~--~~~~~~~l~~L~~~~s~~Lf~~ 272 (720)
.. ..+ .+.+.+++.++..+++..
T Consensus 319 aL~rRf~-~i~l~~p~~~e~~~iL~~ 343 (854)
T 1qvr_A 319 ALERRFQ-PVYVDEPTVEETISILRG 343 (854)
T ss_dssp TTCSCCC-CEEECCCCHHHHHHHHHH
T ss_pred HHHhCCc-eEEeCCCCHHHHHHHHHh
Confidence 11 122 588999999999998864
No 233
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=73.51 E-value=32 Score=36.54 Aligned_cols=135 Identities=17% Similarity=0.208 Sum_probs=70.2
Q ss_pred CCCccccchhHHHHHHhhhccCCCeEEEEEecCCCccccchhcHHHHHHHHHHhhhhcc------cceec----------
Q 047161 127 LDDLVEMNSRLKKLRLLLDAESRDVRMIGICGMGGVELSEKDGLIALQKQLLSKTLMEI------DIEIR---------- 190 (720)
Q Consensus 127 ~~~~vG~~~~~~~i~~~L~~~~~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~~------~~~~~---------- 190 (720)
.+.+||++..++.+...+.... ..-+-|+|..|++. ..+.+.+...+.... .....
T Consensus 179 ld~iiGr~~~i~~l~~~l~r~~--~~~~LL~G~pG~GK------T~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~~g 250 (468)
T 3pxg_A 179 LDPVIGRSKEIQRVIEVLSRRT--KNNPVLIGEPGVGK------TAIAEGLAQQIINNEVPEILRDKRVMTLDMGTKYRG 250 (468)
T ss_dssp SCCCCCCHHHHHHHHHHHHCSS--SCEEEEESCTTTTT------HHHHHHHHHHHHSSCSCTTTSSCCEECC--------
T ss_pred CCCccCcHHHHHHHHHHHhccC--CCCeEEECCCCCCH------HHHHHHHHHHHHhCCCChhhcCCeEEEeeCCccccc
Confidence 3569999999999999885422 22346899999943 344444444421110 00000
Q ss_pred cchhhH-HHHHHHHhcCCeEEEEecCCcHHHHHHHhccCCCCCCCCeEEEEcCChhhhhhc--------cccceEecCCC
Q 047161 191 NDFDGI-KMIKRELRRRNVLVVIDDAVHIRQLNRLAGKHSWFGSGSRIIIPTRDEHLLRTL--------RVDGVYKVEKL 261 (720)
Q Consensus 191 ~~~~~~-~~l~~~l~~kr~LlVLDdv~~~~~~~~l~~~~~~~~~gsrIivTTR~~~v~~~~--------~~~~~~~l~~L 261 (720)
...... ..+...-..+..+|++| ...+....+...+. ...-++|.+|......... .. .++.+...
T Consensus 251 ~~e~~~~~~~~~~~~~~~~iLfiD--~~~~a~~~L~~~L~--~g~v~vI~at~~~e~~~~~~~~~al~~Rf-~~i~v~~p 325 (468)
T 3pxg_A 251 EFEDRLKKVMDEIRQAGNIILFID--AAIDASNILKPSLA--RGELQCIGATTLDEYRKYIEKDAALERRF-QPIQVDQP 325 (468)
T ss_dssp --CTTHHHHHHHHHTCCCCEEEEC--C--------CCCTT--SSSCEEEEECCTTTTHHHHTTCSHHHHSE-EEEECCCC
T ss_pred hHHHHHHHHHHHHHhcCCeEEEEe--CchhHHHHHHHhhc--CCCEEEEecCCHHHHHHHhhcCHHHHHhC-ccceeCCC
Confidence 001112 22222223567889999 23333334444443 1134556555544311110 12 26899999
Q ss_pred CHHHHHHHHHHHh
Q 047161 262 DDDEALELFNKRA 274 (720)
Q Consensus 262 ~~~~s~~Lf~~~a 274 (720)
+.++..+++...+
T Consensus 326 ~~e~~~~iL~~~~ 338 (468)
T 3pxg_A 326 SVDESIQILQGLR 338 (468)
T ss_dssp CHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHH
Confidence 9999999998654
No 234
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=72.05 E-value=8.5 Score=38.15 Aligned_cols=47 Identities=15% Similarity=0.245 Sum_probs=29.5
Q ss_pred CCccccchhHHHHHHhhhc------------cCCCeEEEEEecCCCccccchhcHHHHHHHHHHh
Q 047161 128 DDLVEMNSRLKKLRLLLDA------------ESRDVRMIGICGMGGVELSEKDGLIALQKQLLSK 180 (720)
Q Consensus 128 ~~~vG~~~~~~~i~~~L~~------------~~~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~ 180 (720)
+.++|.+..++.+...+.. ......-+-|+|..|+ +...+.+.+...
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~Gt------GKT~la~~la~~ 73 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGV------GKTEIARRLAKL 73 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTS------SHHHHHHHHHHH
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCC------CHHHHHHHHHHH
Confidence 3588999888888766642 0112345679999999 444444444444
No 235
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=70.85 E-value=65 Score=33.58 Aligned_cols=161 Identities=17% Similarity=0.229 Sum_probs=91.5
Q ss_pred CCCccccchhHHHHHHhhhc-----------cCCCeEEEEEecCCCccccchhcHHHHHHHHHHhhhhccccee------
Q 047161 127 LDDLVEMNSRLKKLRLLLDA-----------ESRDVRMIGICGMGGVELSEKDGLIALQKQLLSKTLMEIDIEI------ 189 (720)
Q Consensus 127 ~~~~vG~~~~~~~i~~~L~~-----------~~~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~~~~~~------ 189 (720)
-+++.|.++.+++|.+.+.. +-.-.+=|-++|..|. +...+.+.+..+. +..-...
T Consensus 181 ~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGT------GKTlLAkAiA~e~-~~~fi~v~~s~l~ 253 (437)
T 4b4t_I 181 YSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGT------GKTLLAKAVANQT-SATFLRIVGSELI 253 (437)
T ss_dssp GGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTT------THHHHHHHHHHHH-TCEEEEEESGGGC
T ss_pred ceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCc------hHHHHHHHHHHHh-CCCEEEEEHHHhh
Confidence 36788999999998776531 1223455789999998 4555556666552 2111111
Q ss_pred -ccchhhHHHHHHHH----hcCCeEEEEecCCcH----------------HHHHHHhccCCCC--CCCCeEEEEcCChhh
Q 047161 190 -RNDFDGIKMIKREL----RRRNVLVVIDDAVHI----------------RQLNRLAGKHSWF--GSGSRIIIPTRDEHL 246 (720)
Q Consensus 190 -~~~~~~~~~l~~~l----~~kr~LlVLDdv~~~----------------~~~~~l~~~~~~~--~~gsrIivTTR~~~v 246 (720)
....+....++..+ ......|.+|+++.. .....+...++.+ ..+-.||.||...+.
T Consensus 254 sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATNrpd~ 333 (437)
T 4b4t_I 254 QKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIET 333 (437)
T ss_dssp CSSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEESCSTT
T ss_pred hccCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCChhh
Confidence 11112223333333 356799999998731 1122333322222 233456777766555
Q ss_pred hhh-----ccccceEecCCCCHHHHHHHHHHHhcCC--CCCchHHHHHHHHHHHhCCCc
Q 047161 247 LRT-----LRVDGVYKVEKLDDDEALELFNKRAFDG--QPSKDYVELIKRIVKYADGLP 298 (720)
Q Consensus 247 ~~~-----~~~~~~~~l~~L~~~~s~~Lf~~~af~~--~~~~~~~~~~~~i~~~c~glP 298 (720)
... -..+..+++..-+.++-.++|..+.-+. ....++. .+++.+.|+-
T Consensus 334 LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl~----~LA~~T~GfS 388 (437)
T 4b4t_I 334 LDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNLE----TLVTTKDDLS 388 (437)
T ss_dssp CCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCCHH----HHHHHCCSCC
T ss_pred cCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCCHH----HHHHhCCCCC
Confidence 332 1456778899999999999998776443 2333444 4455666653
No 236
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=69.45 E-value=41 Score=33.09 Aligned_cols=36 Identities=14% Similarity=0.181 Sum_probs=25.1
Q ss_pred CccccchhHHHHHHhhhcc------C-CCeEEEEEecCCCccc
Q 047161 129 DLVEMNSRLKKLRLLLDAE------S-RDVRMIGICGMGGVEL 164 (720)
Q Consensus 129 ~~vG~~~~~~~i~~~L~~~------~-~~~~vi~I~G~gGi~v 164 (720)
.++|.+..++.+...+... . .....+.++|..|.+.
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGK 60 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGK 60 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSH
T ss_pred hcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCH
Confidence 4788888888887766432 1 1245789999999943
No 237
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=68.23 E-value=40 Score=38.34 Aligned_cols=135 Identities=16% Similarity=0.176 Sum_probs=71.6
Q ss_pred CCCccccchhHHHHHHhhhccCCCeEEEEEecCCCccccchhcHHHHHHHHHHhhhhcc------cceec----------
Q 047161 127 LDDLVEMNSRLKKLRLLLDAESRDVRMIGICGMGGVELSEKDGLIALQKQLLSKTLMEI------DIEIR---------- 190 (720)
Q Consensus 127 ~~~~vG~~~~~~~i~~~L~~~~~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~~------~~~~~---------- 190 (720)
.+.+||++..++++...+.... ..-+-++|..|++. ..+.+.+...+.... .....
T Consensus 179 ld~iiG~~~~i~~l~~~l~~~~--~~~vLL~G~pGtGK------T~la~~la~~l~~~~~p~~l~~~~~~~~~~g~~~~G 250 (758)
T 3pxi_A 179 LDPVIGRSKEIQRVIEVLSRRT--KNNPVLIGEPGVGK------TAIAEGLAQQIINNEVPEILRDKRVMTLDMGTKYRG 250 (758)
T ss_dssp SCCCCCCHHHHHHHHHHHHCSS--SCEEEEESCTTTTT------HHHHHHHHHHHHSSCSCTTTSSCCEECC--------
T ss_pred CCCccCchHHHHHHHHHHhCCC--CCCeEEECCCCCCH------HHHHHHHHHHHhcCCCChhhcCCeEEEecccccccc
Confidence 3579999999999999885422 22356999999943 334444444421110 00000
Q ss_pred cch-hhHHHHHHHHhcCCeEEEEecCCcHHHHHHHhccCCCCCCCCeEEEEcCChhhhhhc--------cccceEecCCC
Q 047161 191 NDF-DGIKMIKRELRRRNVLVVIDDAVHIRQLNRLAGKHSWFGSGSRIIIPTRDEHLLRTL--------RVDGVYKVEKL 261 (720)
Q Consensus 191 ~~~-~~~~~l~~~l~~kr~LlVLDdv~~~~~~~~l~~~~~~~~~gsrIivTTR~~~v~~~~--------~~~~~~~l~~L 261 (720)
... .....+...-..++.+|++| ...+.-..+...+. ...-++|.||......... .. ..+.++..
T Consensus 251 ~~e~~l~~~~~~~~~~~~~iLfiD--~~~~~~~~L~~~l~--~~~v~~I~at~~~~~~~~~~~d~al~rRf-~~i~v~~p 325 (758)
T 3pxi_A 251 EFEDRLKKVMDEIRQAGNIILFID--AAIDASNILKPSLA--RGELQCIGATTLDEYRKYIEKDAALERRF-QPIQVDQP 325 (758)
T ss_dssp --CTTHHHHHHHHHTCCCCEEEEC--C--------CCCTT--SSSCEEEEECCTTTTHHHHTTCSHHHHSE-EEEECCCC
T ss_pred hHHHHHHHHHHHHHhcCCEEEEEc--CchhHHHHHHHHHh--cCCEEEEeCCChHHHHHHhhccHHHHhhC-cEEEeCCC
Confidence 011 12223333334678899999 22233333444433 2234566666544311100 22 36899999
Q ss_pred CHHHHHHHHHHHh
Q 047161 262 DDDEALELFNKRA 274 (720)
Q Consensus 262 ~~~~s~~Lf~~~a 274 (720)
+.++..+++...+
T Consensus 326 ~~~~~~~il~~~~ 338 (758)
T 3pxi_A 326 SVDESIQILQGLR 338 (758)
T ss_dssp CHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHH
Confidence 9999999998644
No 238
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=68.16 E-value=44 Score=33.04 Aligned_cols=35 Identities=11% Similarity=0.142 Sum_probs=24.8
Q ss_pred CCccccchhHHHHHHhhhccCCCeEEEEEecCCCc
Q 047161 128 DDLVEMNSRLKKLRLLLDAESRDVRMIGICGMGGV 162 (720)
Q Consensus 128 ~~~vG~~~~~~~i~~~L~~~~~~~~vi~I~G~gGi 162 (720)
++++|.+..+.++.+.+..-...-.-|-|+|..|.
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~Gt 36 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGT 36 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTS
T ss_pred CCcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCc
Confidence 45899999999988877532222234569999998
No 239
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=65.09 E-value=4.6 Score=35.07 Aligned_cols=35 Identities=11% Similarity=0.236 Sum_probs=21.8
Q ss_pred CccccchhHHHHHHhhhccCCCeEEEEEecCCCcc
Q 047161 129 DLVEMNSRLKKLRLLLDAESRDVRMIGICGMGGVE 163 (720)
Q Consensus 129 ~~vG~~~~~~~i~~~L~~~~~~~~vi~I~G~gGi~ 163 (720)
+++|.+..++++.+.+..-...-.-|-|+|..|.+
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtG 39 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSP 39 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCC
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCcc
Confidence 58899999988887764211122235689999983
No 240
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=64.74 E-value=95 Score=30.99 Aligned_cols=167 Identities=18% Similarity=0.117 Sum_probs=85.2
Q ss_pred CCccccchhHHHHHHhhhcc---CCCeEEEEEecCCCccccchhcHHHHHHHHHHhhhhccc-ceeccchhhHHHHHHHH
Q 047161 128 DDLVEMNSRLKKLRLLLDAE---SRDVRMIGICGMGGVELSEKDGLIALQKQLLSKTLMEID-IEIRNDFDGIKMIKREL 203 (720)
Q Consensus 128 ~~~vG~~~~~~~i~~~L~~~---~~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~~~-~~~~~~~~~~~~l~~~l 203 (720)
+.++|.+..++.+...+..+ ......+.|+|..|.+ ...+.+-+...+ +... ............+...+
T Consensus 25 ~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~G------KTTLa~~ia~~l-~~~~~~~sg~~~~~~~~l~~~~ 97 (334)
T 1in4_A 25 DEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLG------KTTLAHIIASEL-QTNIHVTSGPVLVKQGDMAAIL 97 (334)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSS------HHHHHHHHHHHH-TCCEEEEETTTCCSHHHHHHHH
T ss_pred HHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCc------HHHHHHHHHHHh-CCCEEEEechHhcCHHHHHHHH
Confidence 45788877777776555422 2344678999999994 444444454442 1100 00000000111222222
Q ss_pred h--cCCeEEEEecCCcH--HHHHHHhccCCCC--------CC----------CCeE-EEEcCChhhhhhc--cccceEec
Q 047161 204 R--RRNVLVVIDDAVHI--RQLNRLAGKHSWF--------GS----------GSRI-IIPTRDEHLLRTL--RVDGVYKV 258 (720)
Q Consensus 204 ~--~kr~LlVLDdv~~~--~~~~~l~~~~~~~--------~~----------gsrI-ivTTR~~~v~~~~--~~~~~~~l 258 (720)
. .++-++++|++... ...+.+....... ++ .-.+ -.||+...+...+ .+.-.+.+
T Consensus 98 ~~~~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~at~~~~~Ls~~l~sR~~l~~~L 177 (334)
T 1in4_A 98 TSLERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTRSGLLSSPLRSRFGIILEL 177 (334)
T ss_dssp HHCCTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEEEEEESCGGGSCHHHHTTCSEEEEC
T ss_pred HHccCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEEecCCcccCCHHHHHhcCceeeC
Confidence 1 24557788988642 2333332211111 11 0112 2355543332211 12235889
Q ss_pred CCCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHhCCCchHHH
Q 047161 259 EKLDDDEALELFNKRAFDGQPSKDYVELIKRIVKYADGLPFALE 302 (720)
Q Consensus 259 ~~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~i~~~c~glPLai~ 302 (720)
++.+.++-.+++.+.+-..... --.+....|++.+.|.|-.+.
T Consensus 178 d~~~~~~l~~iL~~~~~~~~~~-~~~~~~~~ia~~~~G~~R~a~ 220 (334)
T 1in4_A 178 DFYTVKELKEIIKRAASLMDVE-IEDAAAEMIAKRSRGTPRIAI 220 (334)
T ss_dssp CCCCHHHHHHHHHHHHHHTTCC-BCHHHHHHHHHTSTTCHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHcCCC-cCHHHHHHHHHhcCCChHHHH
Confidence 9999999999998876322111 113457788999999996543
No 241
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=63.72 E-value=1.4e+02 Score=30.98 Aligned_cols=161 Identities=20% Similarity=0.242 Sum_probs=87.4
Q ss_pred CCCccccchhHHHHHHhhhc-----------cCCCeEEEEEecCCCccccchhcHHHHHHHHHHhhhhccccee------
Q 047161 127 LDDLVEMNSRLKKLRLLLDA-----------ESRDVRMIGICGMGGVELSEKDGLIALQKQLLSKTLMEIDIEI------ 189 (720)
Q Consensus 127 ~~~~vG~~~~~~~i~~~L~~-----------~~~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~~~~~~------ 189 (720)
.+++.|.+..+++|.+.+.. +-...+=|-++|..|. +...+.+.+...+ +..-...
T Consensus 171 ~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGt------GKT~lakAiA~~~-~~~~~~v~~~~l~ 243 (428)
T 4b4t_K 171 YADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGT------GKTMLVKAVANST-KAAFIRVNGSEFV 243 (428)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTT------THHHHHHHHHHHH-TCEEEEEEGGGTC
T ss_pred HHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCC------CHHHHHHHHHHHh-CCCeEEEecchhh
Confidence 35789999999998776531 2233455789999998 5555666666652 2211111
Q ss_pred -ccchhhHHHHHHHH----hcCCeEEEEecCCcHH----------------HHHHHhccCCC--CCCCCeEEEEcCChhh
Q 047161 190 -RNDFDGIKMIKREL----RRRNVLVVIDDAVHIR----------------QLNRLAGKHSW--FGSGSRIIIPTRDEHL 246 (720)
Q Consensus 190 -~~~~~~~~~l~~~l----~~kr~LlVLDdv~~~~----------------~~~~l~~~~~~--~~~gsrIivTTR~~~v 246 (720)
....+....++..+ ......|.+|+++... ....+...++. ...|-.||.||...+.
T Consensus 244 ~~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aTN~~~~ 323 (428)
T 4b4t_K 244 HKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATNRADT 323 (428)
T ss_dssp CSSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEESCSSS
T ss_pred ccccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhh
Confidence 11112233344333 4578999999986321 12223322221 1234456777764443
Q ss_pred -----hhhccccceEecCCC-CHHHHHHHHHHHhcCC--CCCchHHHHHHHHHHHhCCCc
Q 047161 247 -----LRTLRVDGVYKVEKL-DDDEALELFNKRAFDG--QPSKDYVELIKRIVKYADGLP 298 (720)
Q Consensus 247 -----~~~~~~~~~~~l~~L-~~~~s~~Lf~~~af~~--~~~~~~~~~~~~i~~~c~glP 298 (720)
.+....+..+++..+ +.++-.++|..+.-+. .+..++. .+++.+.|+-
T Consensus 324 LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~dl~----~lA~~t~G~s 379 (428)
T 4b4t_K 324 LDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEADLD----SLIIRNDSLS 379 (428)
T ss_dssp CCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCCHH----HHHHHTTTCC
T ss_pred cChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccCHH----HHHHHCCCCC
Confidence 222245667778655 5555566776665433 3333444 4555666653
No 242
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=63.09 E-value=1e+02 Score=29.07 Aligned_cols=142 Identities=15% Similarity=0.170 Sum_probs=73.6
Q ss_pred CCCCccccchhHHHHHHhhhc-cC---------CCeEEEEEecCCCccccchhcHHHHHHHHHHhhhhcccceecc----
Q 047161 126 ILDDLVEMNSRLKKLRLLLDA-ES---------RDVRMIGICGMGGVELSEKDGLIALQKQLLSKTLMEIDIEIRN---- 191 (720)
Q Consensus 126 ~~~~~vG~~~~~~~i~~~L~~-~~---------~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~~~~~~~~---- 191 (720)
..++++|.+..+.++.++... .. .--+=+.|+|..|.+. ..+.+.+... ..........
T Consensus 14 ~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GK------Ttl~~~i~~~-~~~~~i~~~~~~~~ 86 (254)
T 1ixz_A 14 TFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGK------THLARAVAGE-ARVPFITASGSDFV 86 (254)
T ss_dssp CGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSH------HHHHHHHHHH-TTCCEEEEEHHHHH
T ss_pred CHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCH------HHHHHHHHHH-hCCCEEEeeHHHHH
Confidence 345688888777777655421 00 0011288999999843 3444444443 2211111110
Q ss_pred ---chhhHHHHHHHHh----cCCeEEEEecCCcHH----------------HHHHHhccCCCCCC--CCeEEEEcCChhh
Q 047161 192 ---DFDGIKMIKRELR----RRNVLVVIDDAVHIR----------------QLNRLAGKHSWFGS--GSRIIIPTRDEHL 246 (720)
Q Consensus 192 ---~~~~~~~l~~~l~----~kr~LlVLDdv~~~~----------------~~~~l~~~~~~~~~--gsrIivTTR~~~v 246 (720)
.......++..++ ....++++|+++... ....+...+..+.. ...++.||...++
T Consensus 87 ~~~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~a~t~~p~~ 166 (254)
T 1ixz_A 87 EMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDI 166 (254)
T ss_dssp HSCTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESCGGG
T ss_pred HHHhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCEEEEEccCCchh
Confidence 1111223333332 235799999995321 12233333332222 2345567776655
Q ss_pred hhh-----ccccceEecCCCCHHHHHHHHHHHh
Q 047161 247 LRT-----LRVDGVYKVEKLDDDEALELFNKRA 274 (720)
Q Consensus 247 ~~~-----~~~~~~~~l~~L~~~~s~~Lf~~~a 274 (720)
... ...+..+.++..+.++-.+++..++
T Consensus 167 ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~ 199 (254)
T 1ixz_A 167 LDPALLRPGRFDRQIAIDAPDVKGREQILRIHA 199 (254)
T ss_dssp SCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHH
T ss_pred CCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHH
Confidence 432 1345678899999888888887665
No 243
>3hyn_A Putative signal transduction protein; DUF1863 family protein, nucleotide-binding protein, structur genomics; HET: MSE; 1.20A {Eubacterium rectale atcc 33656}
Probab=61.18 E-value=6.3 Score=35.45 Aligned_cols=50 Identities=20% Similarity=0.206 Sum_probs=39.5
Q ss_pred eEeecCCCC----CC----CCcccHHHHHHHHhccceeEEeccCcccchhhhhhhccc
Q 047161 3 KIFEDHKEL----ER----GKAVSPGLFKAIEESRFSVVVFSRNYAYSTWCLDELAKI 52 (720)
Q Consensus 3 ~~f~d~~~l----~~----g~~~~~~l~~ai~~s~~~ivv~S~~ya~s~wcl~el~~i 52 (720)
..|.|-+++ .. -+.|-+.|.+.|..|+..|+++|++...|+|-..|+...
T Consensus 47 F~F~D~Hd~~y~vrDsS~~e~tIKrrLReRI~~Sk~vIllIs~~T~~s~~v~wEIe~A 104 (189)
T 3hyn_A 47 FPFNDAHDKTYNVRDGSDWEKTLKPRLHTRLDNSKNIILFLSSITANSRALREEMNYG 104 (189)
T ss_dssp SSCCBTTTTCCCTTSCCCTTTTHHHHHHHHHHTEEEEEEECCTTCCCCHHHHHHHHHH
T ss_pred eeecchhhccccccccccHHHHHHHHHHHHHHhcCcEEEEEecCccccchhHHHHHHH
Confidence 357775433 22 345888999999999999999999999999988887554
No 244
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=60.28 E-value=96 Score=30.26 Aligned_cols=117 Identities=16% Similarity=0.112 Sum_probs=59.4
Q ss_pred CeEEEEEecCCCccccchhcHHHHHHHHHHhhhhcccceec-------cchhhHHHHHHHH--------hcCCeEEEEec
Q 047161 150 DVRMIGICGMGGVELSEKDGLIALQKQLLSKTLMEIDIEIR-------NDFDGIKMIKREL--------RRRNVLVVIDD 214 (720)
Q Consensus 150 ~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~~~~~~~-------~~~~~~~~l~~~l--------~~kr~LlVLDd 214 (720)
..+.+.++|..|+ +...+.+.+...+ +..-.... ........+++.+ +.+..+|+||+
T Consensus 35 ~p~~lLl~GppGt------GKT~la~aiA~~l-~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDE 107 (293)
T 3t15_A 35 VPLILGIWGGKGQ------GKSFQCELVFRKM-GINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFIND 107 (293)
T ss_dssp CCSEEEEEECTTS------CHHHHHHHHHHHH-TCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEEEC
T ss_pred CCeEEEEECCCCC------CHHHHHHHHHHHh-CCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEEec
Confidence 3456789999999 4555556665552 22211111 0011122233333 44678999999
Q ss_pred CCcHHH---------------HHHHhccCC-------------CCCCCCeEEEEcCChhh-----hhhccccceEecCCC
Q 047161 215 AVHIRQ---------------LNRLAGKHS-------------WFGSGSRIIIPTRDEHL-----LRTLRVDGVYKVEKL 261 (720)
Q Consensus 215 v~~~~~---------------~~~l~~~~~-------------~~~~gsrIivTTR~~~v-----~~~~~~~~~~~l~~L 261 (720)
++.... ...+...+. ....+-.||.||...+. .+....+..+.++
T Consensus 108 iD~~~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~al~R~~R~d~~i~~P-- 185 (293)
T 3t15_A 108 LDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP-- 185 (293)
T ss_dssp CC--------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC--CHHHHHHHEEEEEECC--
T ss_pred hhhhcCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcccCCHHHhCCCCCceeEeCc--
Confidence 953211 122222211 11235678888875432 2212334445543
Q ss_pred CHHHHHHHHHHHhc
Q 047161 262 DDDEALELFNKRAF 275 (720)
Q Consensus 262 ~~~~s~~Lf~~~af 275 (720)
+.++-.+++..+..
T Consensus 186 ~~~~r~~Il~~~~~ 199 (293)
T 3t15_A 186 TREDRIGVCTGIFR 199 (293)
T ss_dssp CHHHHHHHHHHHHG
T ss_pred CHHHHHHHHHHhcc
Confidence 88888888886654
No 245
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=54.31 E-value=1.7e+02 Score=31.21 Aligned_cols=143 Identities=16% Similarity=0.176 Sum_probs=80.2
Q ss_pred CCCCCccccchhHHHHHHhhhc--cC--------CCeEEEEEecCCCccccchhcHHHHHHHHHHhhhhcccceec----
Q 047161 125 GILDDLVEMNSRLKKLRLLLDA--ES--------RDVRMIGICGMGGVELSEKDGLIALQKQLLSKTLMEIDIEIR---- 190 (720)
Q Consensus 125 ~~~~~~vG~~~~~~~i~~~L~~--~~--------~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~~~~~~~---- 190 (720)
...++++|.+..++++.++... .. .-.+=|.|+|..|. +...+.+.|... .........
T Consensus 28 ~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGt------GKTtLaraIa~~-~~~~~i~i~g~~~ 100 (499)
T 2dhr_A 28 VTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGV------GKTHLARAVAGE-ARVPFITASGSDF 100 (499)
T ss_dssp CCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSS------SHHHHHHHHHHH-TTCCEEEEEGGGG
T ss_pred CCHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCC------CHHHHHHHHHHH-hCCCEEEEehhHH
Confidence 3456799999888887765431 10 00122889999998 444455555444 221111111
Q ss_pred ---cchhhHHHHHHHHhc----CCeEEEEecCCcH----------------HHHHHHhccCCCCC--CCCeEEEEcCChh
Q 047161 191 ---NDFDGIKMIKRELRR----RNVLVVIDDAVHI----------------RQLNRLAGKHSWFG--SGSRIIIPTRDEH 245 (720)
Q Consensus 191 ---~~~~~~~~l~~~l~~----kr~LlVLDdv~~~----------------~~~~~l~~~~~~~~--~gsrIivTTR~~~ 245 (720)
........++..++. ...++++|+++.. .....+...+..+. .+-.||.||...+
T Consensus 101 ~~~~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~~viviAatn~p~ 180 (499)
T 2dhr_A 101 VEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPD 180 (499)
T ss_dssp TSSCTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSCCCEEEECCSCGG
T ss_pred HHhhhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccCccEEEEEecCChh
Confidence 111223345555543 2379999999531 11334444443222 2445666777766
Q ss_pred hhhh-----ccccceEecCCCCHHHHHHHHHHHh
Q 047161 246 LLRT-----LRVDGVYKVEKLDDDEALELFNKRA 274 (720)
Q Consensus 246 v~~~-----~~~~~~~~l~~L~~~~s~~Lf~~~a 274 (720)
+... ...+..+.+...+.++-.+++..++
T Consensus 181 ~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~ 214 (499)
T 2dhr_A 181 ILDPALLRPGRFDRQIAIDAPDVKGREQILRIHA 214 (499)
T ss_dssp GSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTT
T ss_pred hcCcccccccccceEEecCCCCHHHHHHHHHHHH
Confidence 5332 2345688899999998888887765
No 246
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=54.10 E-value=1.5e+02 Score=28.31 Aligned_cols=142 Identities=15% Similarity=0.164 Sum_probs=74.4
Q ss_pred CCCCCccccchhHHHHHHhhhc-cC----------CCeEEEEEecCCCccccchhcHHHHHHHHHHhhhhcccceecc--
Q 047161 125 GILDDLVEMNSRLKKLRLLLDA-ES----------RDVRMIGICGMGGVELSEKDGLIALQKQLLSKTLMEIDIEIRN-- 191 (720)
Q Consensus 125 ~~~~~~vG~~~~~~~i~~~L~~-~~----------~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~~~~~~~~-- 191 (720)
...++++|.+..++++.++... .. -... |.|+|..|.+. ..+.+.+... ..........
T Consensus 37 ~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~g-vll~Gp~GtGK------Ttl~~~i~~~-~~~~~i~~~~~~ 108 (278)
T 1iy2_A 37 VTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKG-VLLVGPPGVGK------THLARAVAGE-ARVPFITASGSD 108 (278)
T ss_dssp CCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCE-EEEECCTTSSH------HHHHHHHHHH-TTCCEEEEEHHH
T ss_pred CCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCe-EEEECCCcChH------HHHHHHHHHH-cCCCEEEecHHH
Confidence 3446789998887777665421 00 0112 88999999843 3444444443 2211111110
Q ss_pred -----chhhHHHHHHHH---h-cCCeEEEEecCCcH----------------HHHHHHhccCCCCCC--CCeEEEEcCCh
Q 047161 192 -----DFDGIKMIKREL---R-RRNVLVVIDDAVHI----------------RQLNRLAGKHSWFGS--GSRIIIPTRDE 244 (720)
Q Consensus 192 -----~~~~~~~l~~~l---~-~kr~LlVLDdv~~~----------------~~~~~l~~~~~~~~~--gsrIivTTR~~ 244 (720)
.......+...+ . ....++|+|+|+.. .....+...+..+.. ...++.||...
T Consensus 109 ~~~~~~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~~i~~a~t~~p 188 (278)
T 1iy2_A 109 FVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRP 188 (278)
T ss_dssp HHHSTTTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTCCEEEEEEESCT
T ss_pred HHHHHhhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCCCEEEEEecCCc
Confidence 011122222222 2 34579999999532 112333333332222 23455566665
Q ss_pred hhhhh-----ccccceEecCCCCHHHHHHHHHHHh
Q 047161 245 HLLRT-----LRVDGVYKVEKLDDDEALELFNKRA 274 (720)
Q Consensus 245 ~v~~~-----~~~~~~~~l~~L~~~~s~~Lf~~~a 274 (720)
++... ...+..++++..+.++-.+++..++
T Consensus 189 ~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~ 223 (278)
T 1iy2_A 189 DILDPALLRPGRFDRQIAIDAPDVKGREQILRIHA 223 (278)
T ss_dssp TSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHH
T ss_pred hhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHH
Confidence 54321 2356678888888888888887665
No 247
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=52.26 E-value=1.2e+02 Score=34.58 Aligned_cols=141 Identities=14% Similarity=0.134 Sum_probs=76.2
Q ss_pred CCCccccchhHHHHHHhhhc-----------cCCCeEEEEEecCCCccccchhcHHHHHHHHHHhhhhcccceec-----
Q 047161 127 LDDLVEMNSRLKKLRLLLDA-----------ESRDVRMIGICGMGGVELSEKDGLIALQKQLLSKTLMEIDIEIR----- 190 (720)
Q Consensus 127 ~~~~vG~~~~~~~i~~~L~~-----------~~~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~~~~~~~----- 190 (720)
.++++|.+..++++.+++.. +-..-..|.|+|..|.+ ...+.+.+... .........
T Consensus 203 ~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtG------KTtLarala~~-l~~~~i~v~~~~l~ 275 (806)
T 1ypw_A 203 YDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTG------KTLIARAVANE-TGAFFFLINGPEIM 275 (806)
T ss_dssp GGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSS------HHHHHHHHHHT-TTCEEEEEEHHHHS
T ss_pred HHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCC------HHHHHHHHHHH-cCCcEEEEEchHhh
Confidence 36799999999998877642 11234568999999984 33444444433 221111110
Q ss_pred --cchhhHH----HHHHHHhcCCeEEEEecCCcH----------------HHHHHHhccCCCCCCCCeEEEEcCChhhhh
Q 047161 191 --NDFDGIK----MIKRELRRRNVLVVIDDAVHI----------------RQLNRLAGKHSWFGSGSRIIIPTRDEHLLR 248 (720)
Q Consensus 191 --~~~~~~~----~l~~~l~~kr~LlVLDdv~~~----------------~~~~~l~~~~~~~~~gsrIivTTR~~~v~~ 248 (720)
...+... .+.........++++|+++.. .++-.+..... ...+-.||.||....-..
T Consensus 276 ~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~-~~~~v~vI~atn~~~~ld 354 (806)
T 1ypw_A 276 SKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLK-QRAHVIVMAATNRPNSID 354 (806)
T ss_dssp SSSTTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSC-TTSCCEEEEECSCTTTSC
T ss_pred hhhhhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhc-ccccEEEecccCCchhcC
Confidence 0111122 222333456789999999421 11222222222 112345666665543221
Q ss_pred h-----ccccceEecCCCCHHHHHHHHHHHhc
Q 047161 249 T-----LRVDGVYKVEKLDDDEALELFNKRAF 275 (720)
Q Consensus 249 ~-----~~~~~~~~l~~L~~~~s~~Lf~~~af 275 (720)
. ......+.+...+.++-.+++..++-
T Consensus 355 ~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~ 386 (806)
T 1ypw_A 355 PALRRFGRFDREVDIGIPDATGRLEILQIHTK 386 (806)
T ss_dssp TTTTSTTSSCEEECCCCCCHHHHHHHHHHTTT
T ss_pred HHHhcccccccccccCCCCHHHHHHHHHHHHh
Confidence 1 12345678888899999998887653
No 248
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=49.74 E-value=25 Score=30.55 Aligned_cols=17 Identities=24% Similarity=0.198 Sum_probs=12.9
Q ss_pred eEEEEEecCCCccccch
Q 047161 151 VRMIGICGMGGVELSEK 167 (720)
Q Consensus 151 ~~vi~I~G~gGi~vs~~ 167 (720)
-..++|+|..|.+.|.-
T Consensus 36 g~~~~l~G~~G~GKTtL 52 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHL 52 (149)
T ss_dssp CSEEEEESSSTTTTCHH
T ss_pred CCEEEEECCCCCCHHHH
Confidence 45789999999966643
No 249
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=47.60 E-value=1.2e+02 Score=34.57 Aligned_cols=161 Identities=13% Similarity=0.161 Sum_probs=90.2
Q ss_pred CCCccccchhHHHHHHhhhc-----------cCCCeEEEEEecCCCccccchhcHHHHHHHHHHhhhhccccee------
Q 047161 127 LDDLVEMNSRLKKLRLLLDA-----------ESRDVRMIGICGMGGVELSEKDGLIALQKQLLSKTLMEIDIEI------ 189 (720)
Q Consensus 127 ~~~~vG~~~~~~~i~~~L~~-----------~~~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~~~~~~------ 189 (720)
.+++.|.++.+++|.+.+.. +-.-.+=|-++|..|. +...+.+.+... ++..-..+
T Consensus 203 ~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGT------GKT~LAraiA~e-lg~~~~~v~~~~l~ 275 (806)
T 3cf2_A 203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGT------GKTLIARAVANE-TGAFFFLINGPEIM 275 (806)
T ss_dssp GGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTS------CHHHHHHHHHTT-TTCEEEEEEHHHHH
T ss_pred hhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCC------CHHHHHHHHHHH-hCCeEEEEEhHHhh
Confidence 35688999999888776531 1123455789999998 555556666555 22211111
Q ss_pred -ccchhhHHHHHHHH----hcCCeEEEEecCCcHH-------------HHHHHhccCCCC--CCCCeEEEEcCChhhhh-
Q 047161 190 -RNDFDGIKMIKREL----RRRNVLVVIDDAVHIR-------------QLNRLAGKHSWF--GSGSRIIIPTRDEHLLR- 248 (720)
Q Consensus 190 -~~~~~~~~~l~~~l----~~kr~LlVLDdv~~~~-------------~~~~l~~~~~~~--~~gsrIivTTR~~~v~~- 248 (720)
....+....+++.+ +....+|++|+++... ....+...+... ..+-.||.||...+...
T Consensus 276 sk~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~LD~ 355 (806)
T 3cf2_A 276 SKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDP 355 (806)
T ss_dssp SSCTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEEECSSTTTSCT
T ss_pred cccchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEEEEecCChhhcCH
Confidence 11112223344333 4568999999987421 122222222211 12234566666543322
Q ss_pred ----hccccceEecCCCCHHHHHHHHHHHhcCC--CCCchHHHHHHHHHHHhCCCc
Q 047161 249 ----TLRVDGVYKVEKLDDDEALELFNKRAFDG--QPSKDYVELIKRIVKYADGLP 298 (720)
Q Consensus 249 ----~~~~~~~~~l~~L~~~~s~~Lf~~~af~~--~~~~~~~~~~~~i~~~c~glP 298 (720)
.-..++.+++...+.++-.+++..+.-+. ....++. .+++++.|.-
T Consensus 356 ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl~----~lA~~T~Gfs 407 (806)
T 3cf2_A 356 ALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLE----QVANETHGHV 407 (806)
T ss_dssp TTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCCHH----HHHHHCCSCC
T ss_pred HHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccCHH----HHHHhcCCCC
Confidence 12456788999999999999998766443 3333443 4566677764
No 250
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=44.02 E-value=1.6e+02 Score=29.27 Aligned_cols=99 Identities=8% Similarity=-0.044 Sum_probs=60.7
Q ss_pred hcCCeEEEEecCCc---HHHHHHHhccCCCCCCCCeEEEEcCC-------hhhhhhccc-cceEecCCCCHHHHHHHHHH
Q 047161 204 RRRNVLVVIDDAVH---IRQLNRLAGKHSWFGSGSRIIIPTRD-------EHLLRTLRV-DGVYKVEKLDDDEALELFNK 272 (720)
Q Consensus 204 ~~kr~LlVLDdv~~---~~~~~~l~~~~~~~~~gsrIivTTR~-------~~v~~~~~~-~~~~~l~~L~~~~s~~Lf~~ 272 (720)
.+++=++|+|++.. .+.++.|...+....++..+|++|.. ..+...... ...++..+++.++-.+...+
T Consensus 74 f~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~~ 153 (343)
T 1jr3_D 74 FASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAA 153 (343)
T ss_dssp CCSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHHH
Confidence 45677788999854 35577777666655568888776643 244444322 24788889998888777666
Q ss_pred HhcCCCCCchHHHHHHHHHHHhCCCchHHHH
Q 047161 273 RAFDGQPSKDYVELIKRIVKYADGLPFALET 303 (720)
Q Consensus 273 ~af~~~~~~~~~~~~~~i~~~c~glPLai~~ 303 (720)
.+-.....- -.+....+++.++|-..++..
T Consensus 154 ~~~~~g~~i-~~~a~~~l~~~~~gdl~~~~~ 183 (343)
T 1jr3_D 154 RAKQLNLEL-DDAANQVLCYCYEGNLLALAQ 183 (343)
T ss_dssp HHHHTTCEE-CHHHHHHHHHSSTTCHHHHHH
T ss_pred HHHHcCCCC-CHHHHHHHHHHhchHHHHHHH
Confidence 542221100 123456677778887766554
No 251
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=42.67 E-value=1.1e+02 Score=34.67 Aligned_cols=36 Identities=14% Similarity=0.132 Sum_probs=25.2
Q ss_pred CCccccchhHHHHHHhhhcc-------CCCeEEEEEecCCCcc
Q 047161 128 DDLVEMNSRLKKLRLLLDAE-------SRDVRMIGICGMGGVE 163 (720)
Q Consensus 128 ~~~vG~~~~~~~i~~~L~~~-------~~~~~vi~I~G~gGi~ 163 (720)
..++|.+..++.+...+... ......+-++|..|++
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtG 500 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVG 500 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSS
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCc
Confidence 45889988888887665421 1224578899999993
No 252
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=38.84 E-value=80 Score=31.36 Aligned_cols=135 Identities=10% Similarity=0.020 Sum_probs=69.8
Q ss_pred CCccccchhHHHHHHhhhccCCCeEEEEEecCCCccccchhcHHHHHHHHHHhhhhcccceec-cchhhHHHHHH-H---
Q 047161 128 DDLVEMNSRLKKLRLLLDAESRDVRMIGICGMGGVELSEKDGLIALQKQLLSKTLMEIDIEIR-NDFDGIKMIKR-E--- 202 (720)
Q Consensus 128 ~~~vG~~~~~~~i~~~L~~~~~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~~~~~~~-~~~~~~~~l~~-~--- 202 (720)
+.++|.+..++.+...+..+ .-+-++|..|. +...+.+.+... ......... +.......+.. .
T Consensus 27 ~~i~g~~~~~~~l~~~l~~~----~~vll~G~pGt------GKT~la~~la~~-~~~~~~~i~~~~~~~~~~l~g~~~~~ 95 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICTG----GHILLEGVPGL------AKTLSVNTLAKT-MDLDFHRIQFTPDLLPSDLIGTMIYN 95 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHHT----CCEEEESCCCH------HHHHHHHHHHHH-TTCCEEEEECCTTCCHHHHHEEEEEE
T ss_pred cceeCcHHHHHHHHHHHHcC----CeEEEECCCCC------cHHHHHHHHHHH-hCCCeEEEecCCCCChhhcCCceeec
Confidence 46899998888887766542 24678999998 344444444443 221111110 00000000000 0
Q ss_pred -------HhcC---CeEEEEecCCcH--HHHHHHhccCCC-----------CCCCCeEEEEcCCh----------hhhhh
Q 047161 203 -------LRRR---NVLVVIDDAVHI--RQLNRLAGKHSW-----------FGSGSRIIIPTRDE----------HLLRT 249 (720)
Q Consensus 203 -------l~~k---r~LlVLDdv~~~--~~~~~l~~~~~~-----------~~~gsrIivTTR~~----------~v~~~ 249 (720)
++.. ..++++|+++.. .....+...+.. ......||.|+... .+...
T Consensus 96 ~~~~~~~~~~g~l~~~vl~iDEi~~~~~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~np~~~~~~~~l~~~l~~R 175 (331)
T 2r44_A 96 QHKGNFEVKKGPVFSNFILADEVNRSPAKVQSALLECMQEKQVTIGDTTYPLDNPFLVLATQNPVEQEGTYPLPEAQVDR 175 (331)
T ss_dssp TTTTEEEEEECTTCSSEEEEETGGGSCHHHHHHHHHHHHHSEEEETTEEEECCSSCEEEEEECTTCCSCCCCCCHHHHTT
T ss_pred CCCCceEeccCcccccEEEEEccccCCHHHHHHHHHHHhcCceeeCCEEEECCCCEEEEEecCCCcccCcccCCHHHHhh
Confidence 0011 258999999753 333333322211 12345566666522 22222
Q ss_pred ccccceEecCCCCHHHHHHHHHHHhc
Q 047161 250 LRVDGVYKVEKLDDDEALELFNKRAF 275 (720)
Q Consensus 250 ~~~~~~~~l~~L~~~~s~~Lf~~~af 275 (720)
+ ...+.+...+.++-.+++.+++-
T Consensus 176 f--~~~i~i~~p~~~~~~~il~~~~~ 199 (331)
T 2r44_A 176 F--MMKIHLTYLDKESELEVMRRVSN 199 (331)
T ss_dssp S--SEEEECCCCCHHHHHHHHHHHHC
T ss_pred e--eEEEEcCCCCHHHHHHHHHhccc
Confidence 2 33578999999999999888764
No 253
>2lci_A Protein OR36; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=36.29 E-value=1.5e+02 Score=22.92 Aligned_cols=58 Identities=26% Similarity=0.298 Sum_probs=41.3
Q ss_pred cchhhHHHHHHHHhcCCeEEEEecCCcHHHHHHHhccCCCCCCCCeEEEEcCChhhhhhc
Q 047161 191 NDFDGIKMIKRELRRRNVLVVIDDAVHIRQLNRLAGKHSWFGSGSRIIIPTRDEHLLRTL 250 (720)
Q Consensus 191 ~~~~~~~~l~~~l~~kr~LlVLDdv~~~~~~~~l~~~~~~~~~gsrIivTTR~~~v~~~~ 250 (720)
+-++++.+++....+.-|-+ -||.+.+.+..-...+....+--+|+|.+.+++++..|
T Consensus 10 nndelikkikkevenqgyqv--rdvndsdelkkemkklaeeknfekiliisndkqllkem 67 (134)
T 2lci_A 10 NNDELIKKIKKEVENQGYQV--RDVNDSDELKKEMKKLAEEKNFEKILIISNDKQLLKEM 67 (134)
T ss_dssp SCHHHHHHHHHHTTTTTCEE--EEECSHHHHHHHHHHHHHCCSCCCEEEEESCHHHHHHH
T ss_pred CcHHHHHHHHHHHHccCeee--eecCchHHHHHHHHHHHhhcCcceEEEEcCcHHHHHHH
Confidence 44677888888888877743 57777777654444444445556899999999998765
No 254
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=36.26 E-value=60 Score=29.43 Aligned_cols=37 Identities=14% Similarity=0.088 Sum_probs=20.2
Q ss_pred CCCccccchhH----HHHHHhhhccCCC--eEEEEEecCCCcc
Q 047161 127 LDDLVEMNSRL----KKLRLLLDAESRD--VRMIGICGMGGVE 163 (720)
Q Consensus 127 ~~~~vG~~~~~----~~i~~~L~~~~~~--~~vi~I~G~gGi~ 163 (720)
.+++++.+... +.+..++...... .+.+.|+|..|.+
T Consensus 24 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtG 66 (202)
T 2w58_A 24 LSDVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVG 66 (202)
T ss_dssp TTSSCCSSHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSS
T ss_pred HhhccCCChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCC
Confidence 34566655333 3334444322221 1678899999993
No 255
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=36.22 E-value=2.9e+02 Score=26.37 Aligned_cols=139 Identities=13% Similarity=0.148 Sum_probs=73.9
Q ss_pred CCccccchhHHHHHHhhhc-----------c-CCCeEEEEEecCCCccccchhcHHHHHHHHHHhhhhcccceec-----
Q 047161 128 DDLVEMNSRLKKLRLLLDA-----------E-SRDVRMIGICGMGGVELSEKDGLIALQKQLLSKTLMEIDIEIR----- 190 (720)
Q Consensus 128 ~~~vG~~~~~~~i~~~L~~-----------~-~~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~~~~~~~----- 190 (720)
.++.|.++.++++.+.+.. + ...-. +.++|..|.+ ...+.+.+... .........
T Consensus 10 ~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~G-vlL~Gp~GtG------KTtLakala~~-~~~~~i~i~g~~l~ 81 (274)
T 2x8a_A 10 ADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAG-VLLAGPPGCG------KTLLAKAVANE-SGLNFISVKGPELL 81 (274)
T ss_dssp --CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSE-EEEESSTTSC------HHHHHHHHHHH-TTCEEEEEETTTTC
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCe-EEEECCCCCc------HHHHHHHHHHH-cCCCEEEEEcHHHH
Confidence 4577888777777654320 0 01112 8999999984 44444444443 221111110
Q ss_pred --cchhhHHHHHHHH----hcCCeEEEEecCCcH-------------HHHHHHhccCCCC--CCCCeEEEEcCChhhhhh
Q 047161 191 --NDFDGIKMIKREL----RRRNVLVVIDDAVHI-------------RQLNRLAGKHSWF--GSGSRIIIPTRDEHLLRT 249 (720)
Q Consensus 191 --~~~~~~~~l~~~l----~~kr~LlVLDdv~~~-------------~~~~~l~~~~~~~--~~gsrIivTTR~~~v~~~ 249 (720)
...+....++..+ .....++++|+++.. .....+...+..+ ....-++.+|...++...
T Consensus 82 ~~~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~LD~ 161 (274)
T 2x8a_A 82 NMYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDP 161 (274)
T ss_dssp SSTTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGSCH
T ss_pred hhhhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEEeecCChhhCCH
Confidence 1111122232222 345789999999742 0112222222211 123456777877766443
Q ss_pred c-----cccceEecCCCCHHHHHHHHHHHh
Q 047161 250 L-----RVDGVYKVEKLDDDEALELFNKRA 274 (720)
Q Consensus 250 ~-----~~~~~~~l~~L~~~~s~~Lf~~~a 274 (720)
. ..+..+.+...+.++-.+++..+.
T Consensus 162 al~r~gRfd~~i~~~~P~~~~r~~il~~~~ 191 (274)
T 2x8a_A 162 AILRPGRLDKTLFVGLPPPADRLAILKTIT 191 (274)
T ss_dssp HHHSTTSSCEEEECCSCCHHHHHHHHHHHT
T ss_pred hhcCcccCCeEEEeCCcCHHHHHHHHHHHH
Confidence 2 456788899999999999998765
No 256
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=35.40 E-value=4.4e+02 Score=28.17 Aligned_cols=137 Identities=12% Similarity=0.133 Sum_probs=69.7
Q ss_pred CCccccchhHHHHHHhhhc----cCCCeEEEEEecCCCccccchhcHHHHHHHHHHhhhhccccee--c---cchh----
Q 047161 128 DDLVEMNSRLKKLRLLLDA----ESRDVRMIGICGMGGVELSEKDGLIALQKQLLSKTLMEIDIEI--R---NDFD---- 194 (720)
Q Consensus 128 ~~~vG~~~~~~~i~~~L~~----~~~~~~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~~~~~~--~---~~~~---- 194 (720)
.+++|.+.-++.+.+.+.. ....-.++.++|..|.+ ...+.+.|... ........ . +...
T Consensus 81 ~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtG------KTtlar~ia~~-l~~~~~~i~~~~~~~~~~~~g~ 153 (543)
T 3m6a_A 81 EEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVG------KTSLAKSIAKS-LGRKFVRISLGGVRDESEIRGH 153 (543)
T ss_dssp HHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSS------HHHHHHHHHHH-HTCEEEEECCCC----------
T ss_pred HHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCC------HHHHHHHHHHh-cCCCeEEEEecccchhhhhhhH
Confidence 3478988888777554421 11245578999999994 33444444333 11111111 0 0000
Q ss_pred -------hHHHHHHHHh---cCCeEEEEecCCcHH------HHHHHhccCCCCC---------------CCCeEEEEcCC
Q 047161 195 -------GIKMIKRELR---RRNVLVVIDDAVHIR------QLNRLAGKHSWFG---------------SGSRIIIPTRD 243 (720)
Q Consensus 195 -------~~~~l~~~l~---~kr~LlVLDdv~~~~------~~~~l~~~~~~~~---------------~gsrIivTTR~ 243 (720)
....+.+.+. ...-+++||+++... ....+...+.... ...+||.||..
T Consensus 154 ~~~~ig~~~~~~~~~~~~a~~~~~vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI~ttN~ 233 (543)
T 3m6a_A 154 RRTYVGAMPGRIIQGMKKAGKLNPVFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFIATANN 233 (543)
T ss_dssp ----------CHHHHHHTTCSSSEEEEEEESSSCC---------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEEEECSS
T ss_pred HHHHhccCchHHHHHHHHhhccCCEEEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeecccceEEEeccCc
Confidence 0111222222 134488899997532 1233443332111 23467777765
Q ss_pred hhh-----hhhccccceEecCCCCHHHHHHHHHHHh
Q 047161 244 EHL-----LRTLRVDGVYKVEKLDDDEALELFNKRA 274 (720)
Q Consensus 244 ~~v-----~~~~~~~~~~~l~~L~~~~s~~Lf~~~a 274 (720)
... .+.+ ..+++..++.++-.+++.++.
T Consensus 234 ~~~l~~aL~~R~---~vi~~~~~~~~e~~~Il~~~l 266 (543)
T 3m6a_A 234 LATIPGPLRDRM---EIINIAGYTEIEKLEIVKDHL 266 (543)
T ss_dssp TTTSCHHHHHHE---EEEECCCCCHHHHHHHHHHTH
T ss_pred cccCCHHHHhhc---ceeeeCCCCHHHHHHHHHHHH
Confidence 432 2223 367899999999888887654
No 257
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=34.29 E-value=2.8e+02 Score=31.84 Aligned_cols=35 Identities=14% Similarity=0.210 Sum_probs=24.6
Q ss_pred CccccchhHHHHHHhhhcc-------CCCeEEEEEecCCCcc
Q 047161 129 DLVEMNSRLKKLRLLLDAE-------SRDVRMIGICGMGGVE 163 (720)
Q Consensus 129 ~~vG~~~~~~~i~~~L~~~-------~~~~~vi~I~G~gGi~ 163 (720)
.++|.+..++.+...+... ......+.|+|..|++
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtG 600 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVG 600 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSS
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCC
Confidence 4789888888887666421 1124578899999993
No 258
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=31.81 E-value=37 Score=31.12 Aligned_cols=50 Identities=20% Similarity=0.109 Sum_probs=29.1
Q ss_pred hHHHHHHHHhc-CCeEEEEecCCcHHH-----HHHHhccCCCCCCCCeEEEEcCCh
Q 047161 195 GIKMIKRELRR-RNVLVVIDDAVHIRQ-----LNRLAGKHSWFGSGSRIIIPTRDE 244 (720)
Q Consensus 195 ~~~~l~~~l~~-kr~LlVLDdv~~~~~-----~~~l~~~~~~~~~gsrIivTTR~~ 244 (720)
.....++.+.+ +==|||||++..... .+.+...+......--||+|+|..
T Consensus 108 ~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 108 VWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSC
T ss_pred HHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCC
Confidence 34455566644 445899999854321 233333333333566799999985
No 259
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=29.02 E-value=77 Score=31.58 Aligned_cols=94 Identities=11% Similarity=0.141 Sum_probs=46.5
Q ss_pred cccchHHHHHHHHHHH-hhhChHHHHHHHHHHHHhccCCcccccChhHHHHHHHHHHhhhhccCCCccCCCCCccccchh
Q 047161 58 KQTRSFHEAFAKHEEA-FRESTEKVQNWRHALTEVANPSGWHLKDRHEVEFIQEIVKEISRKKGPRTLGILDDLVEMNSR 136 (720)
Q Consensus 58 ~~~~~~~~~~~~~~~~-~~~~~~~v~~w~~~l~~~~~~~g~~~~~~~e~~~i~~i~~~i~~~~~~~~~~~~~~~vG~~~~ 136 (720)
+.+..|.+.+.+.... ...+.+.++..+++|-++. -..+.++++++.+..+......... =++.-
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~d----------v~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ 78 (320)
T 1zu4_A 13 KSAFNFSKDIKKLSKKYKQADDEFFEELEDVLIQTD----------MGMKMVLKVSNLVRKKTKRDTSFEN----IKDAL 78 (320)
T ss_dssp HHHHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHTT----------CCHHHHHHHHHHHHHHCCTTCCHHH----HHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcC----------CCHHHHHHHHHHHHHHHhhchhHHH----HHHHH
Confidence 3344566666555443 2334555666777766542 1234455566655544322110000 01122
Q ss_pred HHHHHHhhhcc------------CCCeEEEEEecCCCcccc
Q 047161 137 LKKLRLLLDAE------------SRDVRMIGICGMGGVELS 165 (720)
Q Consensus 137 ~~~i~~~L~~~------------~~~~~vi~I~G~gGi~vs 165 (720)
.+++.+++... ....++|+|+|.+|.+.|
T Consensus 79 ~~~l~~~l~~~~~~~~~~~l~~~~~~~~vI~ivG~~G~GKT 119 (320)
T 1zu4_A 79 VESLYQAYTDNDWTNKKYRIDFKENRLNIFMLVGVNGTGKT 119 (320)
T ss_dssp HHHHHHHHHCSCC----CCCCCCTTSCEEEEEESSTTSSHH
T ss_pred HHHHHHHhCcccccccccCccccCCCCeEEEEECCCCCCHH
Confidence 34444555322 134679999999998544
No 260
>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1
Probab=27.79 E-value=18 Score=29.88 Aligned_cols=30 Identities=10% Similarity=-0.065 Sum_probs=24.9
Q ss_pred HHHHhccceeEEeccCcccchhhhhhhccc
Q 047161 23 KAIEESRFSVVVFSRNYAYSTWCLDELAKI 52 (720)
Q Consensus 23 ~ai~~s~~~ivv~S~~ya~s~wcl~el~~i 52 (720)
+.|+.|.+.||..+++-+.|+||-.|+...
T Consensus 34 ~~I~~~~~vIvL~G~~t~~s~wv~~EI~~A 63 (111)
T 1eiw_A 34 ATPEDADAVIVLAGLWGTRRDEILGAVDLA 63 (111)
T ss_dssp CCSSSCSEEEEEGGGTTTSHHHHHHHHHHH
T ss_pred CccccCCEEEEEeCCCcCCChHHHHHHHHH
Confidence 457788888888888888999999999655
No 261
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=26.91 E-value=58 Score=30.17 Aligned_cols=29 Identities=21% Similarity=0.292 Sum_probs=17.7
Q ss_pred HHHHHHhhhccCCCeEEEEEecCCCccccc
Q 047161 137 LKKLRLLLDAESRDVRMIGICGMGGVELSE 166 (720)
Q Consensus 137 ~~~i~~~L~~~~~~~~vi~I~G~gGi~vs~ 166 (720)
+..+..++. +-+.-..+.|+|.+|.+.+.
T Consensus 45 ~~~l~~~~~-~iPkkn~ili~GPPGtGKTt 73 (212)
T 1tue_A 45 LGALKSFLK-GTPKKNCLVFCGPANTGKSY 73 (212)
T ss_dssp HHHHHHHHH-TCTTCSEEEEESCGGGCHHH
T ss_pred HHHHHHHHh-cCCcccEEEEECCCCCCHHH
Confidence 455555553 22333468899999995543
No 262
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=23.00 E-value=1.8e+02 Score=29.00 Aligned_cols=58 Identities=19% Similarity=0.162 Sum_probs=33.3
Q ss_pred EEEEEecCCCccccchhcHHHHHHHHHHhhhhcc--ccee----------ccchhhHHHHHHHHhcCCeEEEEecCCc
Q 047161 152 RMIGICGMGGVELSEKDGLIALQKQLLSKTLMEI--DIEI----------RNDFDGIKMIKRELRRRNVLVVIDDAVH 217 (720)
Q Consensus 152 ~vi~I~G~gGi~vs~~~~~~~~~~~il~~~~~~~--~~~~----------~~~~~~~~~l~~~l~~kr~LlVLDdv~~ 217 (720)
+++-|+|++|++.+ .+...+... .+.. .... .+.+.....+.+.+...+ +||+|++..
T Consensus 124 sviLI~GpPGsGKT------tLAlqlA~~-~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~~~-LLVIDsI~a 193 (331)
T 2vhj_A 124 GMVIVTGKGNSGKT------PLVHALGEA-LGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHR-VIVIDSLKN 193 (331)
T ss_dssp EEEEEECSCSSSHH------HHHHHHHHH-HHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHCS-EEEEECCTT
T ss_pred cEEEEEcCCCCCHH------HHHHHHHHh-CCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHHhhCC-EEEEecccc
Confidence 56779999999443 333333322 1111 0111 233445556777777777 999999864
No 263
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=22.27 E-value=75 Score=31.38 Aligned_cols=14 Identities=14% Similarity=0.138 Sum_probs=10.7
Q ss_pred eEEEEEecCCCccc
Q 047161 151 VRMIGICGMGGVEL 164 (720)
Q Consensus 151 ~~vi~I~G~gGi~v 164 (720)
-..+-|+|..|++.
T Consensus 152 ~~~lll~G~~GtGK 165 (308)
T 2qgz_A 152 QKGLYLYGDMGIGK 165 (308)
T ss_dssp CCEEEEECSTTSSH
T ss_pred CceEEEECCCCCCH
Confidence 45678999999933
No 264
>3ro3_B Minsc, peptide of protein inscuteable homolog; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=21.77 E-value=56 Score=17.69 Aligned_cols=14 Identities=29% Similarity=0.589 Sum_probs=11.0
Q ss_pred hHHHHHHHHHHHHh
Q 047161 78 TEKVQNWRHALTEV 91 (720)
Q Consensus 78 ~~~v~~w~~~l~~~ 91 (720)
.+.|++|.+.|+-.
T Consensus 7 vDSV~rWmeDLr~M 20 (22)
T 3ro3_B 7 VDSVQRWMEDLKLM 20 (26)
T ss_pred hHHHHHHHHHHHhh
Confidence 47799999988743
No 265
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=21.48 E-value=6e+02 Score=25.25 Aligned_cols=18 Identities=0% Similarity=0.235 Sum_probs=11.9
Q ss_pred ceEecCCCCHHHHHHHHH
Q 047161 254 GVYKVEKLDDDEALELFN 271 (720)
Q Consensus 254 ~~~~l~~L~~~~s~~Lf~ 271 (720)
.++.+.+|+.++-.+++.
T Consensus 266 ~~i~~~~l~~~~l~~i~~ 283 (376)
T 1um8_A 266 VLSTLDSISLEAMVDILQ 283 (376)
T ss_dssp EEEECCCCCHHHHHHHHH
T ss_pred ceeeccCCCHHHHHHHHh
Confidence 356777777777666664
No 266
>2pjx_C Syntaxin-4; membrane trafficking, SM protein, snare proteins, endocytosis/exocytosis complex; 3.15A {Mus musculus}
Probab=20.39 E-value=29 Score=19.64 Aligned_cols=23 Identities=39% Similarity=0.583 Sum_probs=16.7
Q ss_pred CCCCCCcccHHHHHHHHhccceeEEec
Q 047161 10 ELERGKAVSPGLFKAIEESRFSVVVFS 36 (720)
Q Consensus 10 ~l~~g~~~~~~l~~ai~~s~~~ivv~S 36 (720)
+|..|++|+.. -.+-++++||-|
T Consensus 7 elrqgdnisdd----edevrvalvvhs 29 (29)
T 2pjx_C 7 ELRQGDNISDD----EDEVRVALVVHS 29 (29)
T ss_pred hhhcCCCCCCc----cceeEEEEEeeC
Confidence 78899998854 345688888754
Done!