BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047163
(658 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3AYX|A Chain A, Membrane-Bound Respiratory [nife] Hydrogenase From
Hydrogenovibrio Marinus In An H2-Reduced Condition
pdb|3AYX|C Chain C, Membrane-Bound Respiratory [nife] Hydrogenase From
Hydrogenovibrio Marinus In An H2-Reduced Condition
pdb|3AYY|A Chain A, Membrane-Bound Respiratory [nife] Hydrogenase From
Hydrogenovibrio Marinus In A Ferricyanide-Oxidized
Condition
pdb|3AYY|C Chain C, Membrane-Bound Respiratory [nife] Hydrogenase From
Hydrogenovibrio Marinus In A Ferricyanide-Oxidized
Condition
pdb|3AYZ|A Chain A, Membrane-Bound Respiratory [nife] Hydrogenase From
Hydrogenovibrio Marinus In An Air-Oxidized Condition
pdb|3AYZ|C Chain C, Membrane-Bound Respiratory [nife] Hydrogenase From
Hydrogenovibrio Marinus In An Air-Oxidized Condition
Length = 596
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 5/52 (9%)
Query: 386 GHAIQVASILRYGMGWGLLENVYTLEEARSRVHRLIDNLKSSCLLLDGDAKD 437
GHA++V + RY +L +E +++VH ++ + C LLD + KD
Sbjct: 405 GHAVEVGPLARY-----ILAYAQGVEYVKTQVHTSLNRFNAVCRLLDPNHKD 451
>pdb|2QGZ|A Chain A, Crystal Structure Of A Putative Primosome Component From
Streptococcus Pyogenes Serotype M3. Northeast Structural
Genomics Target Dr58
Length = 308
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 36/68 (52%), Gaps = 4/68 (5%)
Query: 141 SAPKRAKHMQVKDFEAFD-SKMEVFQ---DVMEALKDDKLNIIGVYGMGGVGKTTLVKQV 196
S PK +H+ + D + + S+ME F D +E + + +YG G+GK+ L+ +
Sbjct: 113 SLPKSYRHIHLSDIDVNNASRMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAM 172
Query: 197 AKQVMEDK 204
A ++ E K
Sbjct: 173 AHELSEKK 180
>pdb|1XJS|A Chain A, Solution Structure Of Iron-Sulfur Cluster Assembly Protein
Iscu From Bacillus Subtilis, With Zinc Bound At The
Active Site. Northeast Structural Genomics Consortium
Target Sr17
pdb|2AZH|A Chain A, Solution Structure Of Iron-Sulfur Cluster Assembly Protein
Sufu From Bacillus Subtilis, With Zinc Bound At The
Active Site. Northeast Structural Genomics Consortium
Target Sr17
Length = 147
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 131 EGNFCDVSYRSAPKRAKHMQVKDFEAFDSKMEVFQDVMEALK-DDKLNIIGVYGMGGVGK 189
EG C +S SA + ++ KD E S ++F D+M+ + DD +++ + + GV K
Sbjct: 62 EGEGCSISMASASMMTQAIKGKDIETALSMSKIFSDMMQGKEYDDSIDLGDIEALQGVSK 121
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 28/47 (59%), Gaps = 7/47 (14%)
Query: 151 VKDFEAFDSKMEVFQDVMEALKDDKLNIIGVYGMGGVGKTTLVKQVA 197
VKD+ +F K+EV E + K +IG+ G G+GKTT VK +A
Sbjct: 364 VKDYGSF--KLEV-----EPGEIRKGEVIGIVGPNGIGKTTFVKMLA 403
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 28/47 (59%), Gaps = 7/47 (14%)
Query: 151 VKDFEAFDSKMEVFQDVMEALKDDKLNIIGVYGMGGVGKTTLVKQVA 197
VKD+ +F K+EV E + K +IG+ G G+GKTT VK +A
Sbjct: 350 VKDYGSF--KLEV-----EPGEIRKGEVIGIVGPNGIGKTTFVKMLA 389
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 28/47 (59%), Gaps = 7/47 (14%)
Query: 151 VKDFEAFDSKMEVFQDVMEALKDDKLNIIGVYGMGGVGKTTLVKQVA 197
VKD+ +F ++EV E + K +IG+ G G+GKTT VK +A
Sbjct: 294 VKDYGSF--RLEV-----EPGEIKKGEVIGIVGPNGIGKTTFVKXLA 333
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 53/122 (43%), Gaps = 19/122 (15%)
Query: 550 LGTLCLEDCPRNDIAILRQLKKLEILRLRHSYTERLPLEIGQLTRLRLLDLSNCWRLKVI 609
L L L+ C + + L L L L H+ + LPL L L +LD+S RL +
Sbjct: 57 LTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFN-RLTSL 115
Query: 610 APNVISKLSRLEELYM-GNSF-----------PKWDKVEGGSNASLAE-----LKGLSKL 652
+ L L+ELY+ GN PK +K+ +N +L E L GL L
Sbjct: 116 PLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN-NLTELPAGLLNGLENL 174
Query: 653 DT 654
DT
Sbjct: 175 DT 176
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 52/122 (42%), Gaps = 19/122 (15%)
Query: 550 LGTLCLEDCPRNDIAILRQLKKLEILRLRHSYTERLPLEIGQLTRLRLLDLSNCWRLKVI 609
L L L+ C + + L L L L H+ + LPL L L +LD+S RL +
Sbjct: 57 LTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFN-RLTSL 115
Query: 610 APNVISKLSRLEELYM-GNSF-----------PKWDKVEGGSNASLAE-----LKGLSKL 652
+ L L+ELY+ GN PK +K+ +N L E L GL L
Sbjct: 116 PLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN-DLTELPAGLLNGLENL 174
Query: 653 DT 654
DT
Sbjct: 175 DT 176
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 52/122 (42%), Gaps = 19/122 (15%)
Query: 550 LGTLCLEDCPRNDIAILRQLKKLEILRLRHSYTERLPLEIGQLTRLRLLDLSNCWRLKVI 609
L L L+ C + + L L L L H+ + LPL L L +LD+S RL +
Sbjct: 57 LTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFN-RLTSL 115
Query: 610 APNVISKLSRLEELYM-GNSF-----------PKWDKVEGGSNASLAE-----LKGLSKL 652
+ L L+ELY+ GN PK +K+ +N L E L GL L
Sbjct: 116 PLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN-QLTELPAGLLNGLENL 174
Query: 653 DT 654
DT
Sbjct: 175 DT 176
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 53/122 (43%), Gaps = 19/122 (15%)
Query: 550 LGTLCLEDCPRNDIAILRQLKKLEILRLRHSYTERLPLEIGQLTRLRLLDLSNCWRLKVI 609
L L L+ C + + L L L L H+ + LPL L L +LD+S RL +
Sbjct: 58 LTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVS-FNRLTSL 116
Query: 610 APNVISKLSRLEELYM-GNSF-----------PKWDKVEGGSNASLAE-----LKGLSKL 652
+ L L+ELY+ GN PK +K+ +N +L E L GL L
Sbjct: 117 PLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN-NLTELPAGLLNGLENL 175
Query: 653 DT 654
DT
Sbjct: 176 DT 177
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 52/122 (42%), Gaps = 19/122 (15%)
Query: 550 LGTLCLEDCPRNDIAILRQLKKLEILRLRHSYTERLPLEIGQLTRLRLLDLSNCWRLKVI 609
L L L+ C + + L L L L H+ + LPL L L +LD+S RL +
Sbjct: 57 LTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFN-RLTSL 115
Query: 610 APNVISKLSRLEELYM-GNSF-----------PKWDKVEGGSNASLAE-----LKGLSKL 652
+ L L+ELY+ GN PK +K+ +N L E L GL L
Sbjct: 116 PLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN-QLTELPAGLLNGLENL 174
Query: 653 DT 654
DT
Sbjct: 175 DT 176
>pdb|4AI6|A Chain A, Dynein Motor Domain - Adp Complex
pdb|4AI6|B Chain B, Dynein Motor Domain - Adp Complex
pdb|4AKG|A Chain A, Dynein Motor Domain - Atp Complex
pdb|4AKG|B Chain B, Dynein Motor Domain - Atp Complex
pdb|4AKH|A Chain A, Dynein Motor Domain - Amppnp Complex
pdb|4AKH|B Chain B, Dynein Motor Domain - Amppnp Complex
pdb|4AKI|A Chain A, Dynein Motor Domain - Luac Derivative
pdb|4AKI|B Chain B, Dynein Motor Domain - Luac Derivative
Length = 2695
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 54/111 (48%), Gaps = 14/111 (12%)
Query: 340 NQLRSSNPREIDGMDKKVYTSIELSYNLLASKEAKSLFRLCGLYNEGHAIQVASILRYGM 399
N ++ R++DG + IEL+ ASKE+ + L + N +A + S +
Sbjct: 2387 NYFTMASERDVDG----TFKLIELAK---ASKESLKIIPLGSIENLNYAQEEISKSKIEG 2439
Query: 400 GWGLLENV-YTLEEARSRVHRLIDNLKSSCLLLDGDAKDEAKMYDVIHVVA 449
GW LL+N+ +L ++ +H+ ++ K++ + ++ KM+ H+
Sbjct: 2440 GWILLQNIQMSLSWVKTYLHKHVEETKAA------EEHEKFKMFMTCHLTG 2484
>pdb|3QMZ|A Chain A, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
pdb|3QMZ|B Chain B, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
Length = 2486
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 54/111 (48%), Gaps = 14/111 (12%)
Query: 340 NQLRSSNPREIDGMDKKVYTSIELSYNLLASKEAKSLFRLCGLYNEGHAIQVASILRYGM 399
N ++ R++DG + IEL+ ASKE+ + L + N +A + S +
Sbjct: 2178 NYFTMASERDVDG----TFKLIELAK---ASKESLKIIPLGSIENLNYAQEEISKSKIEG 2230
Query: 400 GWGLLENV-YTLEEARSRVHRLIDNLKSSCLLLDGDAKDEAKMYDVIHVVA 449
GW LL+N+ +L ++ +H+ ++ K++ + ++ KM+ H+
Sbjct: 2231 GWILLQNIQMSLSWVKTYLHKHVEETKAA------EEHEKFKMFMTCHLTG 2275
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 29.6 bits (65), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 52/122 (42%), Gaps = 19/122 (15%)
Query: 550 LGTLCLEDCPRNDIAILRQLKKLEILRLRHSYTERLPLEIGQLTRLRLLDLSNCWRLKVI 609
L L L+ C + + L L L L H+ + LPL L L +LD+S RL +
Sbjct: 57 LTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFN-RLTSL 115
Query: 610 APNVISKLSRLEELYM-GNSF-----------PKWDKVEGGSNASLAE-----LKGLSKL 652
+ L L+ELY+ GN PK +K+ +N L E L GL L
Sbjct: 116 PLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN-QLTELPAGLLNGLENL 174
Query: 653 DT 654
DT
Sbjct: 175 DT 176
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 29.3 bits (64), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 52/122 (42%), Gaps = 19/122 (15%)
Query: 550 LGTLCLEDCPRNDIAILRQLKKLEILRLRHSYTERLPLEIGQLTRLRLLDLSNCWRLKVI 609
L L L+ C + + L L L L H+ + LPL L L +LD+S RL +
Sbjct: 57 LTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFN-RLTSL 115
Query: 610 APNVISKLSRLEELYM-GNSF-----------PKWDKVEGGSNASLAE-----LKGLSKL 652
+ L L+ELY+ GN PK +K+ +N L E L GL L
Sbjct: 116 PLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN-QLTELPAGLLNGLENL 174
Query: 653 DT 654
DT
Sbjct: 175 DT 176
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 28.9 bits (63), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Query: 566 LRQLKKLEILRLRHS-YTERLPLEIGQLTRLRLLDLSNCWRLKVIAPNVISKLSRLEELY 624
+ + L IL L H+ + +P E+G L L +LDLS+ +L P +S L+ L E+
Sbjct: 652 IGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSN-KLDGRIPQAMSALTMLTEID 710
Query: 625 MGNS 628
+ N+
Sbjct: 711 LSNN 714
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 28.9 bits (63), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Query: 566 LRQLKKLEILRLRHS-YTERLPLEIGQLTRLRLLDLSNCWRLKVIAPNVISKLSRLEELY 624
+ + L IL L H+ + +P E+G L L +LDLS+ +L P +S L+ L E+
Sbjct: 649 IGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSN-KLDGRIPQAMSALTMLTEID 707
Query: 625 MGNS 628
+ N+
Sbjct: 708 LSNN 711
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,021,058
Number of Sequences: 62578
Number of extensions: 703549
Number of successful extensions: 2240
Number of sequences better than 100.0: 47
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 2181
Number of HSP's gapped (non-prelim): 74
length of query: 658
length of database: 14,973,337
effective HSP length: 105
effective length of query: 553
effective length of database: 8,402,647
effective search space: 4646663791
effective search space used: 4646663791
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)