Query 047163
Match_columns 658
No_of_seqs 339 out of 3292
Neff 9.8
Searched_HMMs 46136
Date Fri Mar 29 08:20:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047163.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047163hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 3.1E-75 6.6E-80 650.0 43.8 628 16-657 10-727 (889)
2 PLN03210 Resistant to P. syrin 100.0 1.2E-47 2.6E-52 452.3 38.4 464 152-657 181-735 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 1.5E-37 3.3E-42 314.9 18.4 245 160-407 1-285 (287)
4 KOG0444 Cytoskeletal regulator 99.5 4.9E-16 1.1E-20 159.1 -0.5 174 478-657 56-232 (1255)
5 KOG0617 Ras suppressor protein 99.5 2E-16 4.3E-21 136.7 -3.9 145 478-627 34-182 (264)
6 PLN00113 leucine-rich repeat r 99.5 6.8E-14 1.5E-18 165.9 13.5 172 478-657 119-294 (968)
7 KOG0444 Cytoskeletal regulator 99.5 3.5E-15 7.5E-20 153.0 0.7 181 473-658 99-302 (1255)
8 PLN00113 leucine-rich repeat r 99.5 1.7E-13 3.6E-18 162.7 13.5 171 478-658 94-271 (968)
9 KOG0617 Ras suppressor protein 99.5 2.2E-15 4.8E-20 130.3 -3.8 131 478-612 57-191 (264)
10 KOG4194 Membrane glycoprotein 99.3 2.1E-13 4.6E-18 139.2 1.9 173 477-657 173-351 (873)
11 KOG4194 Membrane glycoprotein 99.3 2.9E-13 6.3E-18 138.3 2.8 197 438-658 126-328 (873)
12 KOG0472 Leucine-rich repeat pr 99.1 1.4E-12 3E-17 127.8 -4.6 166 480-657 140-307 (565)
13 KOG0618 Serine/threonine phosp 99.1 1E-11 2.2E-16 133.9 0.0 170 478-658 288-487 (1081)
14 PLN03210 Resistant to P. syrin 99.1 3.9E-10 8.4E-15 134.6 13.4 122 478-604 590-715 (1153)
15 KOG0472 Leucine-rich repeat pr 99.1 2.8E-12 6E-17 125.6 -5.3 170 478-658 115-286 (565)
16 PF14580 LRR_9: Leucine-rich r 99.1 1.1E-10 2.4E-15 106.2 4.5 138 485-627 5-149 (175)
17 PRK15370 E3 ubiquitin-protein 99.1 3.6E-10 7.7E-15 126.3 9.4 157 478-658 221-378 (754)
18 PRK04841 transcriptional regul 99.0 2.5E-08 5.4E-13 117.9 24.1 269 150-453 9-332 (903)
19 PRK15370 E3 ubiquitin-protein 99.0 7.2E-10 1.6E-14 123.8 9.6 158 478-658 242-399 (754)
20 KOG0532 Leucine-rich repeat (L 99.0 1.4E-11 2.9E-16 126.1 -4.4 164 481-657 79-244 (722)
21 PRK15387 E3 ubiquitin-protein 99.0 1.1E-09 2.4E-14 121.7 9.4 154 478-658 303-456 (788)
22 PF14580 LRR_9: Leucine-rich r 98.9 9.8E-10 2.1E-14 100.0 5.9 127 523-653 17-146 (175)
23 KOG0618 Serine/threonine phosp 98.9 1.3E-10 2.9E-15 125.5 -1.3 171 478-658 242-463 (1081)
24 KOG4237 Extracellular matrix p 98.9 1.4E-10 3.1E-15 113.7 -2.7 87 565-657 269-356 (498)
25 KOG1259 Nischarin, modulator o 98.9 3.6E-10 7.7E-15 106.9 -0.2 125 525-657 284-409 (490)
26 cd00116 LRR_RI Leucine-rich re 98.8 3.9E-09 8.6E-14 108.6 5.3 79 525-603 137-231 (319)
27 PRK15387 E3 ubiquitin-protein 98.8 1.1E-08 2.5E-13 113.7 8.2 146 478-646 323-468 (788)
28 KOG3207 Beta-tubulin folding c 98.8 1.7E-09 3.7E-14 107.7 1.5 150 478-629 122-282 (505)
29 KOG4237 Extracellular matrix p 98.8 9.5E-10 2.1E-14 108.1 -0.3 121 478-600 68-195 (498)
30 KOG1259 Nischarin, modulator o 98.8 1E-09 2.2E-14 103.9 -0.6 128 478-610 285-415 (490)
31 cd00116 LRR_RI Leucine-rich re 98.8 1.1E-08 2.4E-13 105.2 6.8 172 478-657 52-260 (319)
32 TIGR03015 pepcterm_ATPase puta 98.7 1.3E-06 2.7E-11 87.6 19.9 92 173-268 40-135 (269)
33 PRK00411 cdc6 cell division co 98.7 2.3E-07 5E-12 98.4 14.4 116 153-268 28-150 (394)
34 COG4886 Leucine-rich repeat (L 98.7 1.7E-08 3.8E-13 107.1 5.7 168 478-657 117-287 (394)
35 COG2909 MalT ATP-dependent tra 98.7 3E-06 6.6E-11 92.2 22.3 272 150-456 14-341 (894)
36 TIGR02928 orc1/cdc6 family rep 98.6 3.3E-07 7.2E-12 96.2 13.8 114 155-268 15-141 (365)
37 KOG4658 Apoptotic ATPase [Sign 98.5 1.8E-07 4E-12 106.5 9.2 135 489-628 513-652 (889)
38 PF13401 AAA_22: AAA domain; P 98.5 3.5E-07 7.6E-12 80.5 8.9 93 176-268 4-99 (131)
39 KOG0532 Leucine-rich repeat (L 98.5 1.5E-08 3.2E-13 104.3 -0.5 140 483-629 104-245 (722)
40 cd01128 rho_factor Transcripti 98.5 2.6E-07 5.6E-12 89.7 7.8 93 175-268 15-115 (249)
41 PRK00080 ruvB Holliday junctio 98.5 1E-06 2.2E-11 90.6 11.2 251 151-433 21-310 (328)
42 COG4886 Leucine-rich repeat (L 98.4 1.5E-07 3.2E-12 100.0 4.7 166 482-658 98-266 (394)
43 PLN03150 hypothetical protein; 98.4 4.4E-07 9.5E-12 101.2 8.1 103 526-629 419-526 (623)
44 PRK09376 rho transcription ter 98.4 9E-07 2E-11 89.5 9.5 100 167-267 159-267 (416)
45 TIGR00635 ruvB Holliday juncti 98.4 4.9E-06 1.1E-10 84.9 15.1 247 154-433 3-289 (305)
46 KOG3207 Beta-tubulin folding c 98.4 6.7E-08 1.5E-12 96.6 0.1 150 478-629 173-337 (505)
47 PTZ00202 tuzin; Provisional 98.4 1.3E-05 2.9E-10 81.6 16.1 104 149-262 256-367 (550)
48 PF13191 AAA_16: AAA ATPase do 98.4 1.9E-06 4.2E-11 80.8 9.9 48 156-203 1-51 (185)
49 COG1474 CDC6 Cdc6-related prot 98.4 5.9E-06 1.3E-10 85.1 13.6 112 157-268 19-135 (366)
50 PF13855 LRR_8: Leucine rich r 98.3 3.7E-07 8E-12 68.1 3.2 58 570-628 1-59 (61)
51 PLN03150 hypothetical protein; 98.3 1.6E-06 3.6E-11 96.6 8.5 101 501-603 420-525 (623)
52 PF01637 Arch_ATPase: Archaeal 98.3 1E-06 2.2E-11 86.1 5.8 46 157-202 1-46 (234)
53 KOG1859 Leucine-rich repeat pr 98.3 1.9E-08 4E-13 106.2 -6.8 170 477-657 109-289 (1096)
54 PF13855 LRR_8: Leucine rich r 98.2 5.7E-07 1.2E-11 67.1 2.1 60 593-658 1-60 (61)
55 cd00009 AAA The AAA+ (ATPases 98.2 1.1E-05 2.3E-10 72.3 10.7 58 158-217 1-58 (151)
56 TIGR00767 rho transcription te 98.2 4.3E-06 9.4E-11 85.2 8.5 91 176-267 168-266 (415)
57 PF05729 NACHT: NACHT domain 98.2 5.4E-06 1.2E-10 76.1 8.1 86 177-268 1-93 (166)
58 PTZ00112 origin recognition co 98.2 1.9E-05 4.2E-10 86.8 12.9 115 154-268 754-881 (1164)
59 PRK11331 5-methylcytosine-spec 98.1 3.1E-05 6.7E-10 80.4 11.6 109 154-268 174-284 (459)
60 KOG1909 Ran GTPase-activating 98.0 6.3E-06 1.4E-10 80.6 4.5 175 478-658 93-309 (382)
61 KOG3665 ZYG-1-like serine/thre 98.0 3.8E-06 8.3E-11 93.4 3.1 146 478-626 123-283 (699)
62 PF12799 LRR_4: Leucine Rich r 98.0 1E-05 2.2E-10 55.3 4.0 38 526-563 2-39 (44)
63 PRK13342 recombination factor 97.9 1.8E-05 3.9E-10 84.0 7.7 52 150-201 7-61 (413)
64 PF12799 LRR_4: Leucine Rich r 97.9 1.4E-05 3.1E-10 54.5 3.6 39 571-610 2-40 (44)
65 KOG1909 Ran GTPase-activating 97.9 5.8E-06 1.3E-10 80.8 2.0 130 498-628 156-308 (382)
66 KOG0531 Protein phosphatase 1, 97.9 4.3E-06 9.3E-11 89.1 0.9 140 481-627 76-217 (414)
67 COG3903 Predicted ATPase [Gene 97.8 4.3E-05 9.3E-10 77.1 7.7 263 175-455 13-316 (414)
68 COG2256 MGS1 ATPase related to 97.8 8.8E-05 1.9E-09 74.4 9.6 96 149-268 18-116 (436)
69 KOG2120 SCF ubiquitin ligase, 97.8 2.1E-06 4.5E-11 81.9 -1.8 61 497-559 208-271 (419)
70 PF05621 TniB: Bacterial TniB 97.8 0.00033 7.2E-09 68.7 12.4 106 162-267 44-156 (302)
71 KOG3665 ZYG-1-like serine/thre 97.8 1.5E-05 3.2E-10 88.8 3.4 132 498-629 121-261 (699)
72 KOG0531 Protein phosphatase 1, 97.8 6.3E-06 1.4E-10 87.8 0.3 127 497-629 70-197 (414)
73 KOG2028 ATPase related to the 97.8 8.4E-05 1.8E-09 73.1 7.9 97 151-267 134-233 (554)
74 PF05496 RuvB_N: Holliday junc 97.7 0.0015 3.3E-08 61.3 15.1 55 149-203 18-77 (233)
75 KOG1859 Leucine-rich repeat pr 97.7 1.1E-06 2.3E-11 93.4 -6.6 128 478-610 165-295 (1096)
76 KOG4579 Leucine-rich repeat (L 97.7 8.4E-06 1.8E-10 68.9 -0.2 102 525-628 27-133 (177)
77 KOG2543 Origin recognition com 97.6 0.00039 8.4E-09 69.3 10.7 114 155-273 6-132 (438)
78 PF13173 AAA_14: AAA domain 97.6 9.3E-05 2E-09 64.6 5.4 78 176-274 2-79 (128)
79 PRK15386 type III secretion pr 97.6 0.00012 2.5E-09 75.3 6.6 115 497-628 50-187 (426)
80 PRK15386 type III secretion pr 97.5 0.00038 8.2E-09 71.6 9.3 133 478-629 53-211 (426)
81 PLN03025 replication factor C 97.5 0.00053 1.1E-08 70.2 10.3 52 150-201 8-59 (319)
82 PRK04195 replication factor C 97.5 0.00031 6.7E-09 76.2 9.1 52 150-201 9-64 (482)
83 PRK07003 DNA polymerase III su 97.5 0.002 4.4E-08 70.9 15.0 51 151-201 12-63 (830)
84 TIGR02903 spore_lon_C ATP-depe 97.5 0.019 4.2E-07 63.9 23.1 52 151-202 150-201 (615)
85 PRK08118 topology modulation p 97.5 5.9E-05 1.3E-09 69.0 2.8 35 177-211 2-37 (167)
86 CHL00095 clpC Clp protease ATP 97.4 0.00063 1.4E-08 78.6 10.9 101 154-267 178-282 (821)
87 TIGR02639 ClpA ATP-dependent C 97.4 0.00066 1.4E-08 77.5 11.0 102 153-267 180-285 (731)
88 smart00382 AAA ATPases associa 97.4 0.00046 1E-08 61.0 7.9 89 177-269 3-91 (148)
89 PF00004 AAA: ATPase family as 97.4 0.00023 4.9E-09 62.4 5.6 69 179-268 1-70 (132)
90 KOG2227 Pre-initiation complex 97.4 0.0014 3.1E-08 67.1 11.7 117 152-268 147-268 (529)
91 KOG4579 Leucine-rich repeat (L 97.4 2E-05 4.3E-10 66.7 -1.4 90 497-588 51-141 (177)
92 KOG1644 U2-associated snRNP A' 97.4 0.00019 4E-09 65.2 4.6 102 524-627 41-149 (233)
93 KOG2120 SCF ubiquitin ligase, 97.4 2E-05 4.3E-10 75.4 -1.7 147 478-629 211-374 (419)
94 KOG1644 U2-associated snRNP A' 97.4 0.00026 5.7E-09 64.2 5.2 99 479-579 44-149 (233)
95 PRK12402 replication factor C 97.4 0.00061 1.3E-08 70.7 8.9 52 150-201 10-61 (337)
96 PRK00440 rfc replication facto 97.4 0.0012 2.6E-08 67.8 10.7 53 150-202 12-64 (319)
97 PF14516 AAA_35: AAA-like doma 97.3 0.0048 1E-07 63.4 14.8 178 150-330 6-246 (331)
98 PRK12608 transcription termina 97.3 0.0024 5.3E-08 65.0 12.1 102 165-267 121-231 (380)
99 PRK05564 DNA polymerase III su 97.3 0.0022 4.8E-08 65.5 12.0 59 155-213 4-67 (313)
100 TIGR03420 DnaA_homol_Hda DnaA 97.3 0.00078 1.7E-08 65.4 8.3 54 160-215 22-75 (226)
101 KOG0991 Replication factor C, 97.3 0.00059 1.3E-08 63.2 6.7 104 150-268 22-125 (333)
102 PRK14949 DNA polymerase III su 97.3 0.00093 2E-08 75.0 9.3 51 151-201 12-63 (944)
103 PRK13341 recombination factor 97.3 0.00056 1.2E-08 76.8 7.6 52 150-201 23-77 (725)
104 KOG2982 Uncharacterized conser 97.3 0.00011 2.4E-09 70.4 1.7 84 497-580 69-156 (418)
105 COG3899 Predicted ATPase [Gene 97.3 0.017 3.7E-07 66.7 19.4 89 301-398 238-333 (849)
106 PRK14961 DNA polymerase III su 97.2 0.002 4.2E-08 67.2 10.8 51 151-201 12-63 (363)
107 TIGR03345 VI_ClpV1 type VI sec 97.2 0.0012 2.7E-08 76.0 9.9 51 152-202 184-234 (852)
108 PRK14958 DNA polymerase III su 97.2 0.0016 3.4E-08 70.6 10.0 51 151-201 12-63 (509)
109 PRK14962 DNA polymerase III su 97.2 0.0017 3.6E-08 69.6 10.1 52 150-201 9-61 (472)
110 PF04665 Pox_A32: Poxvirus A32 97.2 0.0011 2.4E-08 63.5 7.6 36 177-214 14-49 (241)
111 PHA00729 NTP-binding motif con 97.2 0.002 4.3E-08 61.1 9.1 36 166-201 7-42 (226)
112 PRK10865 protein disaggregatio 97.2 0.0014 3E-08 75.8 9.8 51 152-202 175-225 (857)
113 PRK14957 DNA polymerase III su 97.2 0.0019 4.1E-08 70.0 10.1 51 151-201 12-63 (546)
114 PRK03992 proteasome-activating 97.2 0.0014 3.1E-08 68.8 8.9 94 153-267 129-235 (389)
115 PRK12323 DNA polymerase III su 97.1 0.002 4.3E-08 70.0 9.6 51 151-201 12-63 (700)
116 PRK06893 DNA replication initi 97.1 0.0018 4E-08 62.7 8.6 39 175-215 38-76 (229)
117 PRK14960 DNA polymerase III su 97.1 0.0022 4.8E-08 69.9 9.6 51 151-201 11-62 (702)
118 TIGR01242 26Sp45 26S proteasom 97.1 0.0014 3E-08 68.5 8.1 50 152-201 119-181 (364)
119 PHA02544 44 clamp loader, smal 97.1 0.0021 4.5E-08 65.9 9.0 51 150-200 16-67 (316)
120 PRK14963 DNA polymerase III su 97.1 0.00037 8E-09 75.2 3.5 51 151-201 10-61 (504)
121 PRK14956 DNA polymerase III su 97.1 0.0016 3.6E-08 68.6 8.1 52 150-201 13-65 (484)
122 KOG2739 Leucine-rich acidic nu 97.1 0.00025 5.3E-09 67.2 1.7 106 521-627 39-152 (260)
123 PF05673 DUF815: Protein of un 97.0 0.0033 7.2E-08 59.9 9.1 56 148-203 20-79 (249)
124 PRK14964 DNA polymerase III su 97.0 0.0042 9.1E-08 66.3 10.8 50 151-200 9-59 (491)
125 PRK06645 DNA polymerase III su 97.0 0.0042 9.2E-08 66.9 10.7 52 150-201 16-68 (507)
126 PRK14969 DNA polymerase III su 97.0 0.0043 9.3E-08 67.7 10.8 50 152-201 13-63 (527)
127 PRK12727 flagellar biosynthesi 97.0 0.027 5.8E-07 60.2 16.1 88 176-266 350-438 (559)
128 TIGR03346 chaperone_ClpB ATP-d 97.0 0.0033 7.2E-08 73.0 10.4 50 153-202 171-220 (852)
129 TIGR03689 pup_AAA proteasome A 97.0 0.0033 7.1E-08 67.4 9.5 51 152-202 179-242 (512)
130 PRK08691 DNA polymerase III su 97.0 0.0041 8.9E-08 68.4 10.1 51 151-201 12-63 (709)
131 PF00448 SRP54: SRP54-type pro 96.9 0.0059 1.3E-07 57.4 9.9 89 176-266 1-93 (196)
132 PRK07952 DNA replication prote 96.9 0.075 1.6E-06 51.6 17.7 88 163-267 84-173 (244)
133 COG2255 RuvB Holliday junction 96.9 0.0013 2.8E-08 63.1 5.3 53 151-203 22-79 (332)
134 PRK05896 DNA polymerase III su 96.9 0.0043 9.2E-08 67.5 10.0 51 151-201 12-63 (605)
135 PF13207 AAA_17: AAA domain; P 96.9 0.00081 1.8E-08 58.0 3.7 23 178-200 1-23 (121)
136 KOG2982 Uncharacterized conser 96.9 0.00019 4.2E-09 68.8 -0.3 170 478-653 72-285 (418)
137 TIGR02237 recomb_radB DNA repa 96.9 0.0046 9.9E-08 59.1 9.1 87 176-266 12-107 (209)
138 PRK07994 DNA polymerase III su 96.9 0.0032 7E-08 69.4 9.0 52 151-202 12-64 (647)
139 KOG2123 Uncharacterized conser 96.9 8.7E-05 1.9E-09 70.4 -2.9 97 498-599 18-123 (388)
140 KOG0733 Nuclear AAA ATPase (VC 96.9 0.0053 1.2E-07 64.9 9.7 94 154-268 189-294 (802)
141 PRK11034 clpA ATP-dependent Cl 96.9 0.0011 2.3E-08 75.0 5.0 101 154-267 185-289 (758)
142 PRK07940 DNA polymerase III su 96.9 0.011 2.4E-07 61.7 12.1 47 154-200 4-60 (394)
143 PRK08181 transposase; Validate 96.8 0.093 2E-06 51.8 17.8 77 169-266 101-177 (269)
144 PRK14951 DNA polymerase III su 96.8 0.0051 1.1E-07 67.6 9.8 51 151-201 12-63 (618)
145 smart00763 AAA_PrkA PrkA AAA d 96.8 0.0019 4.1E-08 65.5 5.8 47 156-202 52-104 (361)
146 PRK07261 topology modulation p 96.8 0.0026 5.6E-08 58.6 6.1 34 178-211 2-36 (171)
147 PRK14955 DNA polymerase III su 96.8 0.0073 1.6E-07 63.8 10.3 51 151-201 12-63 (397)
148 COG5238 RNA1 Ran GTPase-activa 96.8 0.0015 3.4E-08 62.0 4.5 133 496-629 89-253 (388)
149 PRK06696 uridine kinase; Valid 96.8 0.0022 4.8E-08 61.9 5.9 44 159-202 2-48 (223)
150 PTZ00454 26S protease regulato 96.8 0.0062 1.3E-07 63.8 9.5 95 152-267 142-249 (398)
151 cd01123 Rad51_DMC1_radA Rad51_ 96.8 0.0045 9.8E-08 60.4 8.1 89 177-266 20-125 (235)
152 PRK14970 DNA polymerase III su 96.8 0.0089 1.9E-07 62.6 10.7 51 151-201 13-64 (367)
153 TIGR02881 spore_V_K stage V sp 96.8 0.0055 1.2E-07 60.8 8.7 47 155-201 6-67 (261)
154 PRK08084 DNA replication initi 96.7 0.0075 1.6E-07 58.7 9.3 51 163-215 32-82 (235)
155 PRK08727 hypothetical protein; 96.7 0.0074 1.6E-07 58.6 9.1 59 154-214 18-77 (233)
156 cd01393 recA_like RecA is a b 96.7 0.01 2.2E-07 57.5 10.1 90 176-266 19-124 (226)
157 PRK08116 hypothetical protein; 96.7 0.0087 1.9E-07 59.3 9.5 74 177-266 115-188 (268)
158 TIGR02012 tigrfam_recA protein 96.7 0.0064 1.4E-07 61.2 8.6 84 177-267 56-144 (321)
159 TIGR02397 dnaX_nterm DNA polym 96.7 0.013 2.9E-07 61.1 11.2 51 151-201 10-61 (355)
160 COG0466 Lon ATP-dependent Lon 96.7 0.0068 1.5E-07 65.7 8.7 63 154-221 322-390 (782)
161 PRK12377 putative replication 96.6 0.015 3.3E-07 56.6 10.5 74 175-266 100-173 (248)
162 KOG2123 Uncharacterized conser 96.6 0.00018 3.9E-09 68.4 -2.7 100 524-624 18-123 (388)
163 TIGR01241 FtsH_fam ATP-depende 96.6 0.0081 1.8E-07 65.5 9.4 95 152-267 52-158 (495)
164 cd00983 recA RecA is a bacter 96.6 0.0077 1.7E-07 60.7 8.3 84 176-266 55-143 (325)
165 PRK09354 recA recombinase A; P 96.6 0.0089 1.9E-07 60.8 8.8 84 176-266 60-148 (349)
166 cd01133 F1-ATPase_beta F1 ATP 96.6 0.022 4.8E-07 55.8 11.0 89 177-266 70-173 (274)
167 PRK14952 DNA polymerase III su 96.6 0.013 2.8E-07 64.2 10.4 51 151-201 9-60 (584)
168 KOG0734 AAA+-type ATPase conta 96.6 0.0068 1.5E-07 63.1 7.7 87 160-267 312-407 (752)
169 PRK09111 DNA polymerase III su 96.6 0.011 2.3E-07 65.2 9.8 51 151-201 20-71 (598)
170 PRK05541 adenylylsulfate kinas 96.6 0.0078 1.7E-07 55.8 7.6 37 175-213 6-42 (176)
171 PRK14954 DNA polymerase III su 96.6 0.011 2.4E-07 65.3 9.8 51 151-201 12-63 (620)
172 PTZ00361 26 proteosome regulat 96.5 0.0065 1.4E-07 64.2 7.3 93 153-266 181-286 (438)
173 COG1484 DnaC DNA replication p 96.5 0.019 4.2E-07 56.3 10.1 88 160-267 88-178 (254)
174 PRK05703 flhF flagellar biosyn 96.5 0.11 2.4E-06 55.1 16.4 87 177-266 222-309 (424)
175 PRK14971 DNA polymerase III su 96.5 0.019 4.1E-07 63.7 11.1 50 152-201 14-64 (614)
176 PRK09361 radB DNA repair and r 96.5 0.013 2.9E-07 56.6 8.9 86 176-266 23-117 (225)
177 cd01120 RecA-like_NTPases RecA 96.4 0.022 4.7E-07 51.7 9.7 40 178-219 1-40 (165)
178 PF05659 RPW8: Arabidopsis bro 96.4 0.016 3.6E-07 51.1 8.3 113 2-130 3-115 (147)
179 PF00308 Bac_DnaA: Bacterial d 96.4 0.013 2.8E-07 56.2 8.3 76 175-267 33-108 (219)
180 PRK14722 flhF flagellar biosyn 96.4 0.019 4.1E-07 59.1 9.8 88 176-266 137-225 (374)
181 TIGR03499 FlhF flagellar biosy 96.4 0.021 4.5E-07 57.2 9.9 88 175-265 193-281 (282)
182 PRK14953 DNA polymerase III su 96.4 0.024 5.1E-07 61.2 11.0 51 151-201 12-63 (486)
183 PRK07764 DNA polymerase III su 96.4 0.016 3.4E-07 66.2 9.9 51 151-201 11-62 (824)
184 TIGR01425 SRP54_euk signal rec 96.3 0.3 6.5E-06 51.4 18.4 90 175-266 99-192 (429)
185 CHL00181 cbbX CbbX; Provisiona 96.3 0.026 5.6E-07 56.5 10.3 24 178-201 61-84 (287)
186 PLN00020 ribulose bisphosphate 96.3 0.0096 2.1E-07 60.2 7.1 29 174-202 146-174 (413)
187 PRK11889 flhF flagellar biosyn 96.3 0.041 8.8E-07 56.5 11.6 89 175-266 240-330 (436)
188 PRK14959 DNA polymerase III su 96.3 0.016 3.4E-07 63.5 9.2 51 151-201 12-63 (624)
189 TIGR00602 rad24 checkpoint pro 96.3 0.005 1.1E-07 67.9 5.4 53 149-201 78-135 (637)
190 KOG2739 Leucine-rich acidic nu 96.3 0.003 6.5E-08 60.1 3.1 109 478-587 44-160 (260)
191 KOG0733 Nuclear AAA ATPase (VC 96.3 0.011 2.4E-07 62.7 7.4 71 176-267 545-615 (802)
192 TIGR02238 recomb_DMC1 meiotic 96.3 0.02 4.2E-07 58.0 8.9 89 177-266 97-201 (313)
193 PRK06547 hypothetical protein; 96.2 0.0067 1.5E-07 55.7 5.0 36 166-201 5-40 (172)
194 PF00154 RecA: recA bacterial 96.2 0.025 5.5E-07 56.8 9.4 86 176-268 53-143 (322)
195 CHL00176 ftsH cell division pr 96.2 0.015 3.2E-07 64.7 8.4 93 154-267 182-286 (638)
196 TIGR02880 cbbX_cfxQ probable R 96.2 0.035 7.5E-07 55.7 10.3 25 178-202 60-84 (284)
197 KOG1969 DNA replication checkp 96.2 0.011 2.3E-07 64.1 6.9 73 176-268 326-399 (877)
198 PRK09270 nucleoside triphospha 96.2 0.008 1.7E-07 58.3 5.5 29 174-202 31-59 (229)
199 PRK09087 hypothetical protein; 96.2 0.02 4.3E-07 55.3 8.1 25 176-200 44-68 (226)
200 PRK08451 DNA polymerase III su 96.1 0.041 9E-07 59.5 11.2 50 151-200 10-60 (535)
201 PRK08939 primosomal protein Dn 96.1 0.04 8.6E-07 55.7 10.3 90 159-267 135-228 (306)
202 PRK14088 dnaA chromosomal repl 96.1 0.017 3.6E-07 61.8 7.9 75 176-267 130-205 (440)
203 PRK14950 DNA polymerase III su 96.1 0.038 8.2E-07 61.5 11.0 51 151-201 12-63 (585)
204 PRK07667 uridine kinase; Provi 96.1 0.0091 2E-07 56.2 5.3 38 165-202 4-43 (193)
205 PRK05563 DNA polymerase III su 96.1 0.046 9.9E-07 60.2 11.4 51 151-201 12-63 (559)
206 COG1222 RPT1 ATP-dependent 26S 96.1 0.029 6.4E-07 55.9 8.8 93 154-267 150-255 (406)
207 KOG0736 Peroxisome assembly fa 96.1 0.042 9.2E-07 60.0 10.6 98 150-268 667-776 (953)
208 COG1419 FlhF Flagellar GTP-bin 96.1 0.053 1.2E-06 55.6 10.9 101 162-266 185-291 (407)
209 PRK15455 PrkA family serine pr 96.0 0.008 1.7E-07 64.3 5.1 49 154-202 75-129 (644)
210 TIGR00678 holB DNA polymerase 96.0 0.05 1.1E-06 51.0 10.1 36 167-202 4-40 (188)
211 PRK14965 DNA polymerase III su 96.0 0.031 6.7E-07 61.9 9.9 51 151-201 12-63 (576)
212 COG1618 Predicted nucleotide k 96.0 0.0094 2E-07 52.4 4.6 31 176-207 5-35 (179)
213 PRK06647 DNA polymerase III su 96.0 0.036 7.8E-07 60.8 10.2 51 151-201 12-63 (563)
214 KOG2004 Mitochondrial ATP-depe 96.0 0.015 3.2E-07 62.9 6.8 65 154-223 410-480 (906)
215 PRK14974 cell division protein 96.0 0.093 2E-06 53.5 12.4 90 175-267 139-233 (336)
216 PRK14948 DNA polymerase III su 96.0 0.047 1E-06 60.7 11.1 51 151-201 12-63 (620)
217 PF00485 PRK: Phosphoribulokin 96.0 0.0064 1.4E-07 57.3 3.8 25 178-202 1-25 (194)
218 TIGR02639 ClpA ATP-dependent C 96.0 0.026 5.7E-07 64.6 9.4 104 154-268 453-565 (731)
219 PF13238 AAA_18: AAA domain; P 96.0 0.0061 1.3E-07 53.0 3.4 22 179-200 1-22 (129)
220 cd03115 SRP The signal recogni 96.0 0.046 1E-06 50.4 9.4 25 178-202 2-26 (173)
221 COG0542 clpA ATP-binding subun 96.0 0.0098 2.1E-07 66.2 5.5 102 154-268 169-274 (786)
222 PF08423 Rad51: Rad51; InterP 96.0 0.044 9.6E-07 53.9 9.6 89 177-266 39-143 (256)
223 PRK13531 regulatory ATPase Rav 96.0 0.011 2.5E-07 62.3 5.8 51 155-207 20-70 (498)
224 PRK06305 DNA polymerase III su 96.0 0.04 8.7E-07 59.0 10.1 50 152-201 14-64 (451)
225 PRK00771 signal recognition pa 96.0 0.047 1E-06 57.8 10.4 88 175-266 94-185 (437)
226 COG1223 Predicted ATPase (AAA+ 95.9 0.022 4.7E-07 54.1 6.8 93 153-266 119-220 (368)
227 TIGR01243 CDC48 AAA family ATP 95.9 0.025 5.4E-07 65.0 8.9 50 152-201 175-237 (733)
228 PF01695 IstB_IS21: IstB-like 95.9 0.017 3.8E-07 53.3 6.1 73 176-267 47-119 (178)
229 PRK07133 DNA polymerase III su 95.9 0.044 9.5E-07 61.1 10.1 50 151-200 14-64 (725)
230 PRK05642 DNA replication initi 95.8 0.047 1E-06 53.1 9.2 36 177-214 46-81 (234)
231 COG0194 Gmk Guanylate kinase [ 95.8 0.036 7.7E-07 50.3 7.5 24 177-200 5-28 (191)
232 PRK05480 uridine/cytidine kina 95.8 0.0085 1.8E-07 57.3 3.9 27 174-200 4-30 (209)
233 TIGR00362 DnaA chromosomal rep 95.8 0.029 6.4E-07 59.6 8.4 75 176-267 136-210 (405)
234 PRK06526 transposase; Provisio 95.8 0.021 4.6E-07 56.0 6.7 27 176-202 98-124 (254)
235 PF06309 Torsin: Torsin; Inte 95.8 0.065 1.4E-06 45.6 8.6 45 156-200 26-77 (127)
236 cd02019 NK Nucleoside/nucleoti 95.8 0.0082 1.8E-07 45.7 3.0 23 178-200 1-23 (69)
237 cd01394 radB RadB. The archaea 95.8 0.039 8.5E-07 53.0 8.5 42 176-219 19-60 (218)
238 TIGR00959 ffh signal recogniti 95.8 0.12 2.5E-06 54.7 12.4 91 175-266 98-192 (428)
239 PRK00149 dnaA chromosomal repl 95.8 0.034 7.3E-07 60.0 8.8 75 176-267 148-222 (450)
240 COG1102 Cmk Cytidylate kinase 95.8 0.013 2.9E-07 51.5 4.4 45 178-235 2-46 (179)
241 TIGR00763 lon ATP-dependent pr 95.8 0.031 6.7E-07 64.4 8.8 47 155-201 320-372 (775)
242 PRK08233 hypothetical protein; 95.8 0.0085 1.8E-07 55.8 3.6 26 176-201 3-28 (182)
243 PLN03187 meiotic recombination 95.8 0.058 1.3E-06 55.1 9.7 89 177-266 127-231 (344)
244 PRK06921 hypothetical protein; 95.7 0.049 1.1E-06 53.9 9.0 39 175-214 116-154 (266)
245 PRK12726 flagellar biosynthesi 95.7 0.084 1.8E-06 54.1 10.7 90 175-267 205-296 (407)
246 PRK12723 flagellar biosynthesi 95.7 0.079 1.7E-06 55.2 10.8 89 175-266 173-264 (388)
247 TIGR00554 panK_bact pantothena 95.7 0.07 1.5E-06 53.2 10.0 28 174-201 60-87 (290)
248 PRK12724 flagellar biosynthesi 95.7 0.045 9.7E-07 56.9 8.8 85 176-265 223-308 (432)
249 KOG0731 AAA+-type ATPase conta 95.7 0.027 5.7E-07 62.4 7.5 87 160-267 319-414 (774)
250 PTZ00301 uridine kinase; Provi 95.7 0.01 2.2E-07 56.4 3.8 26 176-201 3-28 (210)
251 TIGR00064 ftsY signal recognit 95.7 0.097 2.1E-06 52.0 10.9 40 174-215 70-109 (272)
252 COG0468 RecA RecA/RadA recombi 95.7 0.079 1.7E-06 52.2 10.1 89 176-266 60-151 (279)
253 PF13306 LRR_5: Leucine rich r 95.7 0.026 5.7E-07 49.0 6.2 119 519-649 6-128 (129)
254 KOG0730 AAA+-type ATPase [Post 95.7 0.099 2.1E-06 56.4 11.4 95 152-267 431-538 (693)
255 PRK14087 dnaA chromosomal repl 95.7 0.035 7.6E-07 59.4 8.3 77 176-267 141-217 (450)
256 TIGR03877 thermo_KaiC_1 KaiC d 95.7 0.087 1.9E-06 51.3 10.4 47 176-226 21-67 (237)
257 PRK08903 DnaA regulatory inact 95.6 0.029 6.3E-07 54.3 6.9 49 154-202 17-68 (227)
258 PLN03186 DNA repair protein RA 95.6 0.049 1.1E-06 55.8 8.7 90 176-266 123-228 (342)
259 PF13671 AAA_33: AAA domain; P 95.6 0.011 2.4E-07 52.5 3.6 24 178-201 1-24 (143)
260 TIGR00235 udk uridine kinase. 95.6 0.011 2.4E-07 56.4 3.8 27 175-201 5-31 (207)
261 PRK10536 hypothetical protein; 95.6 0.069 1.5E-06 51.7 9.0 58 152-211 52-109 (262)
262 PRK09183 transposase/IS protei 95.6 0.057 1.2E-06 53.3 8.8 26 177-202 103-128 (259)
263 COG0563 Adk Adenylate kinase a 95.6 0.031 6.6E-07 51.6 6.4 24 178-201 2-25 (178)
264 cd02025 PanK Pantothenate kina 95.6 0.07 1.5E-06 51.2 9.1 24 178-201 1-24 (220)
265 TIGR02236 recomb_radA DNA repa 95.6 0.082 1.8E-06 53.9 10.2 90 176-266 95-202 (310)
266 PRK10867 signal recognition pa 95.6 0.078 1.7E-06 56.0 10.1 91 175-266 99-193 (433)
267 TIGR02239 recomb_RAD51 DNA rep 95.6 0.062 1.3E-06 54.6 9.2 90 176-266 96-201 (316)
268 PRK06762 hypothetical protein; 95.6 0.012 2.5E-07 54.0 3.6 25 176-200 2-26 (166)
269 PRK04301 radA DNA repair and r 95.5 0.086 1.9E-06 53.9 10.2 90 176-266 102-208 (317)
270 PTZ00035 Rad51 protein; Provis 95.5 0.082 1.8E-06 54.2 9.9 90 176-266 118-223 (337)
271 KOG0744 AAA+-type ATPase [Post 95.5 0.033 7.2E-07 54.6 6.5 39 176-214 177-217 (423)
272 PRK03839 putative kinase; Prov 95.5 0.012 2.7E-07 54.6 3.5 24 178-201 2-25 (180)
273 TIGR01360 aden_kin_iso1 adenyl 95.5 0.013 2.8E-07 54.9 3.7 26 175-200 2-27 (188)
274 KOG3347 Predicted nucleotide k 95.5 0.03 6.6E-07 48.4 5.4 69 177-255 8-76 (176)
275 PRK06067 flagellar accessory p 95.5 0.093 2E-06 51.1 9.8 86 176-266 25-130 (234)
276 COG0572 Udk Uridine kinase [Nu 95.5 0.014 2.9E-07 54.8 3.6 28 175-202 7-34 (218)
277 CHL00195 ycf46 Ycf46; Provisio 95.5 0.056 1.2E-06 58.1 8.8 93 154-267 227-329 (489)
278 COG4608 AppF ABC-type oligopep 95.4 0.048 1E-06 52.8 7.3 90 176-269 39-140 (268)
279 PF07728 AAA_5: AAA domain (dy 95.4 0.04 8.7E-07 48.7 6.5 42 179-225 2-43 (139)
280 PRK10787 DNA-binding ATP-depen 95.4 0.071 1.5E-06 61.0 10.0 48 154-201 321-374 (784)
281 COG0541 Ffh Signal recognition 95.4 0.36 7.8E-06 49.9 13.8 90 175-266 99-192 (451)
282 PF00006 ATP-synt_ab: ATP synt 95.4 0.11 2.5E-06 49.3 9.8 86 177-266 16-115 (215)
283 cd01121 Sms Sms (bacterial rad 95.4 0.04 8.6E-07 57.2 7.3 85 177-266 83-168 (372)
284 KOG2228 Origin recognition com 95.4 0.095 2.1E-06 51.9 9.2 109 156-267 25-148 (408)
285 COG0470 HolB ATPase involved i 95.4 0.091 2E-06 54.0 10.0 45 157-201 3-49 (325)
286 cd01135 V_A-ATPase_B V/A-type 95.3 0.079 1.7E-06 51.9 8.6 91 177-267 70-177 (276)
287 PRK04296 thymidine kinase; Pro 95.3 0.043 9.3E-07 51.4 6.6 84 177-266 3-88 (190)
288 COG2607 Predicted ATPase (AAA+ 95.3 0.079 1.7E-06 49.9 8.0 56 148-203 53-112 (287)
289 PRK06835 DNA replication prote 95.3 0.13 2.7E-06 52.5 10.4 36 177-214 184-219 (329)
290 PRK00625 shikimate kinase; Pro 95.3 0.015 3.2E-07 53.5 3.2 24 178-201 2-25 (173)
291 COG1373 Predicted ATPase (AAA+ 95.3 0.077 1.7E-06 55.9 9.0 99 158-280 20-118 (398)
292 PF13481 AAA_25: AAA domain; P 95.3 0.12 2.6E-06 48.6 9.6 89 177-267 33-152 (193)
293 PRK14721 flhF flagellar biosyn 95.3 0.14 3E-06 53.8 10.7 87 176-265 191-278 (420)
294 PF03205 MobB: Molybdopterin g 95.2 0.039 8.5E-07 48.7 5.7 39 177-216 1-39 (140)
295 PF00560 LRR_1: Leucine Rich R 95.2 0.0079 1.7E-07 34.0 0.8 19 572-590 2-20 (22)
296 TIGR03345 VI_ClpV1 type VI sec 95.2 0.04 8.6E-07 63.8 7.3 107 154-268 565-680 (852)
297 KOG1514 Origin recognition com 95.2 0.16 3.4E-06 55.3 11.0 111 154-268 395-520 (767)
298 COG1066 Sms Predicted ATP-depe 95.2 0.057 1.2E-06 55.0 7.4 85 177-267 94-179 (456)
299 PRK04040 adenylate kinase; Pro 95.2 0.018 3.8E-07 53.8 3.6 25 177-201 3-27 (188)
300 PRK11034 clpA ATP-dependent Cl 95.2 0.049 1.1E-06 61.8 7.7 103 155-268 458-569 (758)
301 COG1703 ArgK Putative periplas 95.2 0.042 9E-07 53.6 6.0 59 165-223 38-98 (323)
302 PRK08533 flagellar accessory p 95.2 0.13 2.8E-06 49.8 9.6 48 176-227 24-71 (230)
303 PRK04328 hypothetical protein; 95.1 0.12 2.5E-06 50.8 9.3 41 176-218 23-63 (249)
304 cd02023 UMPK Uridine monophosp 95.1 0.014 3.1E-07 55.1 2.8 23 178-200 1-23 (198)
305 CHL00095 clpC Clp protease ATP 95.1 0.065 1.4E-06 62.2 8.7 107 154-268 508-623 (821)
306 cd02027 APSK Adenosine 5'-phos 95.1 0.089 1.9E-06 47.1 7.8 24 178-201 1-24 (149)
307 KOG0735 AAA+-type ATPase [Post 95.1 0.035 7.5E-07 60.1 5.7 72 177-267 432-505 (952)
308 TIGR03346 chaperone_ClpB ATP-d 95.1 0.062 1.3E-06 62.6 8.4 107 154-268 564-679 (852)
309 PRK09519 recA DNA recombinatio 95.1 0.099 2.1E-06 58.9 9.5 85 176-267 60-149 (790)
310 TIGR01243 CDC48 AAA family ATP 95.1 0.089 1.9E-06 60.5 9.5 93 154-267 452-557 (733)
311 KOG0989 Replication factor C, 95.1 0.038 8.2E-07 54.0 5.4 72 149-220 30-102 (346)
312 PRK12422 chromosomal replicati 95.0 0.072 1.6E-06 56.9 8.0 73 176-267 141-213 (445)
313 PRK12597 F0F1 ATP synthase sub 95.0 0.15 3.3E-06 54.1 10.2 91 177-268 144-249 (461)
314 PRK10865 protein disaggregatio 95.0 0.082 1.8E-06 61.4 9.1 107 154-268 567-682 (857)
315 PF03308 ArgK: ArgK protein; 95.0 0.057 1.2E-06 51.9 6.4 57 164-220 15-73 (266)
316 PRK13765 ATP-dependent proteas 95.0 0.052 1.1E-06 60.2 7.0 81 149-233 25-105 (637)
317 PF01583 APS_kinase: Adenylyls 95.0 0.029 6.2E-07 50.1 4.1 35 177-213 3-37 (156)
318 PRK00131 aroK shikimate kinase 95.0 0.024 5.2E-07 52.3 3.8 26 176-201 4-29 (175)
319 cd02024 NRK1 Nicotinamide ribo 95.0 0.018 3.9E-07 53.4 2.9 23 178-200 1-23 (187)
320 PRK14723 flhF flagellar biosyn 95.0 0.12 2.6E-06 58.0 9.7 88 176-266 185-273 (767)
321 TIGR02030 BchI-ChlI magnesium 95.0 0.042 9.1E-07 56.2 5.7 47 154-200 3-49 (337)
322 PRK06995 flhF flagellar biosyn 95.0 0.12 2.7E-06 55.1 9.4 88 176-266 256-344 (484)
323 PRK06851 hypothetical protein; 94.9 0.28 6.1E-06 50.5 11.6 54 159-217 201-254 (367)
324 PRK09112 DNA polymerase III su 94.9 0.061 1.3E-06 55.5 6.9 53 150-202 18-71 (351)
325 TIGR02322 phosphon_PhnN phosph 94.9 0.023 4.9E-07 52.8 3.5 25 177-201 2-26 (179)
326 COG5238 RNA1 Ran GTPase-activa 94.9 0.015 3.2E-07 55.6 2.1 178 478-657 31-252 (388)
327 cd01124 KaiC KaiC is a circadi 94.9 0.11 2.3E-06 48.6 8.0 45 178-226 1-45 (187)
328 PRK10751 molybdopterin-guanine 94.9 0.029 6.2E-07 51.2 3.9 28 175-202 5-32 (173)
329 COG1428 Deoxynucleoside kinase 94.9 0.049 1.1E-06 50.5 5.4 48 176-228 4-51 (216)
330 KOG0741 AAA+-type ATPase [Post 94.9 0.083 1.8E-06 55.3 7.6 82 175-279 537-621 (744)
331 PF12775 AAA_7: P-loop contain 94.9 0.016 3.4E-07 57.6 2.4 86 166-267 24-111 (272)
332 TIGR00390 hslU ATP-dependent p 94.9 0.079 1.7E-06 55.0 7.5 48 155-202 12-73 (441)
333 COG3640 CooC CO dehydrogenase 94.9 0.06 1.3E-06 50.6 5.9 42 178-220 2-43 (255)
334 PF00910 RNA_helicase: RNA hel 94.9 0.022 4.7E-07 47.8 2.8 24 179-202 1-24 (107)
335 TIGR01359 UMP_CMP_kin_fam UMP- 94.9 0.02 4.3E-07 53.4 2.9 24 178-201 1-24 (183)
336 PF08433 KTI12: Chromatin asso 94.9 0.035 7.5E-07 54.9 4.7 26 177-202 2-27 (270)
337 PRK14086 dnaA chromosomal repl 94.8 0.1 2.3E-06 57.0 8.6 75 176-267 314-388 (617)
338 KOG2170 ATPase of the AAA+ sup 94.8 0.068 1.5E-06 52.1 6.3 99 156-268 83-190 (344)
339 TIGR00150 HI0065_YjeE ATPase, 94.8 0.056 1.2E-06 46.9 5.2 26 177-202 23-48 (133)
340 PRK06217 hypothetical protein; 94.8 0.024 5.2E-07 52.8 3.2 33 178-211 3-37 (183)
341 KOG0729 26S proteasome regulat 94.8 0.24 5.1E-06 47.3 9.6 92 154-266 176-280 (435)
342 PRK13949 shikimate kinase; Pro 94.7 0.028 6E-07 51.5 3.5 24 178-201 3-26 (169)
343 PRK00889 adenylylsulfate kinas 94.7 0.032 6.9E-07 51.6 3.9 27 176-202 4-30 (175)
344 cd00227 CPT Chloramphenicol (C 94.7 0.027 5.9E-07 52.0 3.5 24 177-200 3-26 (175)
345 PRK09280 F0F1 ATP synthase sub 94.7 0.25 5.5E-06 52.3 10.9 91 177-268 145-250 (463)
346 TIGR03878 thermo_KaiC_2 KaiC d 94.7 0.16 3.4E-06 50.2 9.0 40 176-217 36-75 (259)
347 TIGR02640 gas_vesic_GvpN gas v 94.7 0.099 2.1E-06 51.8 7.6 56 161-223 8-63 (262)
348 PRK07471 DNA polymerase III su 94.7 0.052 1.1E-06 56.3 5.8 52 150-201 14-66 (365)
349 cd02020 CMPK Cytidine monophos 94.7 0.025 5.3E-07 50.5 3.0 24 178-201 1-24 (147)
350 CHL00081 chlI Mg-protoporyphyr 94.7 0.041 8.9E-07 56.3 4.9 49 153-201 15-63 (350)
351 PRK08972 fliI flagellum-specif 94.7 0.15 3.3E-06 53.4 9.1 89 176-268 162-264 (444)
352 PTZ00088 adenylate kinase 1; P 94.7 0.053 1.1E-06 52.3 5.3 24 178-201 8-31 (229)
353 cd02028 UMPK_like Uridine mono 94.7 0.025 5.4E-07 52.4 3.0 24 178-201 1-24 (179)
354 PRK12678 transcription termina 94.7 0.17 3.7E-06 54.4 9.3 92 176-268 416-515 (672)
355 KOG4341 F-box protein containi 94.6 0.002 4.3E-08 65.0 -4.6 156 497-656 162-355 (483)
356 TIGR03305 alt_F1F0_F1_bet alte 94.6 0.1 2.3E-06 54.9 7.8 91 177-268 139-244 (449)
357 COG0542 clpA ATP-binding subun 94.6 0.11 2.5E-06 58.0 8.4 106 154-268 490-605 (786)
358 cd02021 GntK Gluconate kinase 94.6 0.025 5.5E-07 50.7 2.8 23 178-200 1-23 (150)
359 PRK08149 ATP synthase SpaL; Va 94.6 0.11 2.3E-06 54.6 7.8 89 176-268 151-253 (428)
360 PRK05439 pantothenate kinase; 94.6 0.28 6E-06 49.4 10.4 28 174-201 84-111 (311)
361 PRK08927 fliI flagellum-specif 94.6 0.24 5.1E-06 52.2 10.2 90 175-268 157-260 (442)
362 TIGR03263 guanyl_kin guanylate 94.6 0.026 5.6E-07 52.4 2.9 24 177-200 2-25 (180)
363 KOG1532 GTPase XAB1, interacts 94.6 0.045 9.8E-07 52.3 4.4 29 175-203 18-46 (366)
364 PRK13947 shikimate kinase; Pro 94.6 0.03 6.5E-07 51.5 3.3 24 178-201 3-26 (171)
365 PF03215 Rad17: Rad17 cell cyc 94.5 0.057 1.2E-06 58.5 5.8 59 151-213 15-78 (519)
366 PF13177 DNA_pol3_delta2: DNA 94.5 0.29 6.3E-06 44.5 9.6 43 159-201 1-44 (162)
367 PRK05342 clpX ATP-dependent pr 94.5 0.094 2E-06 55.2 7.2 47 155-201 71-133 (412)
368 PRK13407 bchI magnesium chelat 94.5 0.053 1.2E-06 55.3 5.2 49 152-200 5-53 (334)
369 PF02562 PhoH: PhoH-like prote 94.5 0.056 1.2E-06 50.7 4.9 50 162-213 7-56 (205)
370 PRK14529 adenylate kinase; Pro 94.5 0.13 2.8E-06 49.2 7.5 83 178-266 2-86 (223)
371 COG1936 Predicted nucleotide k 94.5 0.029 6.3E-07 50.1 2.8 20 178-197 2-21 (180)
372 PRK14530 adenylate kinase; Pro 94.5 0.034 7.3E-07 53.4 3.6 25 177-201 4-28 (215)
373 PF07726 AAA_3: ATPase family 94.4 0.026 5.6E-07 48.1 2.3 24 179-202 2-25 (131)
374 PTZ00185 ATPase alpha subunit; 94.4 0.36 7.8E-06 51.3 10.9 92 177-268 190-301 (574)
375 PF06745 KaiC: KaiC; InterPro 94.4 0.079 1.7E-06 51.3 5.9 87 176-266 19-125 (226)
376 PRK06002 fliI flagellum-specif 94.4 0.12 2.6E-06 54.4 7.5 89 177-268 166-266 (450)
377 COG1763 MobB Molybdopterin-gua 94.4 0.042 9.1E-07 49.3 3.6 28 176-203 2-29 (161)
378 cd00464 SK Shikimate kinase (S 94.3 0.037 8.1E-07 49.8 3.3 23 179-201 2-24 (154)
379 PRK00300 gmk guanylate kinase; 94.3 0.036 7.7E-07 52.8 3.3 25 176-200 5-29 (205)
380 COG1224 TIP49 DNA helicase TIP 94.3 0.098 2.1E-06 52.2 6.3 56 153-208 37-97 (450)
381 COG1124 DppF ABC-type dipeptid 94.3 0.041 8.9E-07 52.1 3.5 26 177-202 34-59 (252)
382 PRK05057 aroK shikimate kinase 94.3 0.042 9.1E-07 50.6 3.6 26 176-201 4-29 (172)
383 PRK10078 ribose 1,5-bisphospho 94.3 0.033 7.2E-07 52.0 3.0 24 177-200 3-26 (186)
384 PRK10463 hydrogenase nickel in 94.3 0.08 1.7E-06 52.4 5.7 34 169-202 97-130 (290)
385 TIGR00764 lon_rel lon-related 94.3 0.11 2.4E-06 57.8 7.4 77 152-232 15-91 (608)
386 PRK03846 adenylylsulfate kinas 94.3 0.048 1E-06 51.5 4.0 30 173-202 21-50 (198)
387 TIGR00750 lao LAO/AO transport 94.3 0.18 3.9E-06 51.0 8.4 30 173-202 31-60 (300)
388 PRK14527 adenylate kinase; Pro 94.2 0.046 1E-06 51.3 3.8 28 174-201 4-31 (191)
389 TIGR02655 circ_KaiC circadian 94.2 0.18 3.8E-06 54.9 8.7 86 176-266 263-363 (484)
390 TIGR02902 spore_lonB ATP-depen 94.2 0.059 1.3E-06 59.1 5.0 49 152-200 62-110 (531)
391 COG0467 RAD55 RecA-superfamily 94.2 0.067 1.5E-06 53.0 5.1 50 175-228 22-71 (260)
392 COG0003 ArsA Predicted ATPase 94.2 0.097 2.1E-06 52.9 6.1 48 176-225 2-49 (322)
393 TIGR00073 hypB hydrogenase acc 94.2 0.052 1.1E-06 51.7 4.1 30 172-201 18-47 (207)
394 cd00071 GMPK Guanosine monopho 94.2 0.035 7.6E-07 48.9 2.6 23 178-200 1-23 (137)
395 PF13245 AAA_19: Part of AAA d 94.1 0.12 2.6E-06 40.1 5.3 26 175-200 9-35 (76)
396 cd00820 PEPCK_HprK Phosphoenol 94.1 0.042 9.1E-07 45.5 2.9 21 177-197 16-36 (107)
397 TIGR01313 therm_gnt_kin carboh 94.1 0.035 7.6E-07 50.6 2.7 22 179-200 1-22 (163)
398 TIGR00176 mobB molybdopterin-g 94.1 0.044 9.6E-07 49.3 3.2 33 178-211 1-33 (155)
399 PRK12339 2-phosphoglycerate ki 94.1 0.048 1.1E-06 51.2 3.6 25 176-200 3-27 (197)
400 PF00625 Guanylate_kin: Guanyl 94.1 0.066 1.4E-06 49.9 4.5 36 176-213 2-37 (183)
401 COG0714 MoxR-like ATPases [Gen 94.1 0.12 2.7E-06 53.1 7.0 61 157-224 26-86 (329)
402 PRK13975 thymidylate kinase; P 94.1 0.047 1E-06 51.5 3.5 26 177-202 3-28 (196)
403 TIGR01041 ATP_syn_B_arch ATP s 94.1 0.36 7.8E-06 51.3 10.3 92 177-268 142-250 (458)
404 KOG0738 AAA+-type ATPase [Post 94.0 0.21 4.6E-06 50.4 8.0 26 177-202 246-271 (491)
405 PRK13948 shikimate kinase; Pro 94.0 0.057 1.2E-06 50.0 3.9 28 174-201 8-35 (182)
406 TIGR01040 V-ATPase_V1_B V-type 94.0 0.19 4.1E-06 52.9 7.9 92 177-268 142-259 (466)
407 PRK13695 putative NTPase; Prov 94.0 0.081 1.8E-06 48.8 4.8 25 178-202 2-26 (174)
408 cd00544 CobU Adenosylcobinamid 94.0 0.22 4.7E-06 45.5 7.5 81 179-266 2-83 (169)
409 PRK05201 hslU ATP-dependent pr 94.0 0.15 3.2E-06 53.1 6.9 48 154-201 14-75 (443)
410 TIGR01039 atpD ATP synthase, F 93.9 0.53 1.2E-05 49.8 11.2 91 177-268 144-249 (461)
411 COG2019 AdkA Archaeal adenylat 93.9 0.057 1.2E-06 47.9 3.4 25 176-200 4-28 (189)
412 PRK11823 DNA repair protein Ra 93.9 0.13 2.8E-06 55.0 6.9 82 177-267 81-167 (446)
413 KOG0739 AAA+-type ATPase [Post 93.9 0.28 6E-06 47.8 8.3 71 176-267 166-236 (439)
414 PRK13946 shikimate kinase; Pro 93.9 0.051 1.1E-06 50.7 3.4 25 177-201 11-35 (184)
415 PF00560 LRR_1: Leucine Rich R 93.9 0.017 3.7E-07 32.7 0.1 21 526-546 1-21 (22)
416 PRK06936 type III secretion sy 93.9 0.31 6.8E-06 51.3 9.4 89 176-268 162-264 (439)
417 COG0464 SpoVK ATPases of the A 93.9 0.31 6.7E-06 53.4 9.9 74 175-269 275-348 (494)
418 PF13306 LRR_5: Leucine rich r 93.9 0.15 3.3E-06 44.0 6.2 115 497-620 10-128 (129)
419 cd03281 ABC_MSH5_euk MutS5 hom 93.8 0.07 1.5E-06 51.0 4.2 24 176-199 29-52 (213)
420 KOG3864 Uncharacterized conser 93.8 0.017 3.7E-07 52.9 -0.1 79 549-627 102-185 (221)
421 PF08477 Miro: Miro-like prote 93.8 0.056 1.2E-06 46.1 3.2 24 179-202 2-25 (119)
422 cd01136 ATPase_flagellum-secre 93.8 0.37 8.1E-06 48.8 9.5 88 176-267 69-170 (326)
423 PF01078 Mg_chelatase: Magnesi 93.8 0.11 2.4E-06 48.5 5.3 44 154-199 2-45 (206)
424 PF00005 ABC_tran: ABC transpo 93.8 0.047 1E-06 48.0 2.7 26 177-202 12-37 (137)
425 cd01672 TMPK Thymidine monopho 93.8 0.18 4E-06 47.4 7.0 25 178-202 2-26 (200)
426 PRK07399 DNA polymerase III su 93.8 0.55 1.2E-05 47.7 10.7 46 155-200 4-50 (314)
427 TIGR01287 nifH nitrogenase iro 93.7 0.11 2.3E-06 52.1 5.5 40 177-218 1-40 (275)
428 PRK06620 hypothetical protein; 93.7 0.049 1.1E-06 52.0 2.9 24 177-200 45-68 (214)
429 TIGR00416 sms DNA repair prote 93.7 0.2 4.4E-06 53.6 7.9 86 177-267 95-181 (454)
430 COG1120 FepC ABC-type cobalami 93.7 0.049 1.1E-06 52.8 2.9 35 176-213 28-62 (258)
431 cd01132 F1_ATPase_alpha F1 ATP 93.7 0.21 4.6E-06 49.0 7.2 87 177-267 70-172 (274)
432 PF03266 NTPase_1: NTPase; In 93.7 0.064 1.4E-06 49.0 3.4 24 179-202 2-25 (168)
433 COG1116 TauB ABC-type nitrate/ 93.6 0.056 1.2E-06 51.6 3.1 25 177-201 30-54 (248)
434 PRK09825 idnK D-gluconate kina 93.6 0.061 1.3E-06 49.7 3.3 26 177-202 4-29 (176)
435 cd01125 repA Hexameric Replica 93.6 0.35 7.6E-06 47.2 8.9 25 178-202 3-27 (239)
436 PF08298 AAA_PrkA: PrkA AAA do 93.6 0.11 2.5E-06 52.4 5.4 48 155-202 61-114 (358)
437 PHA02244 ATPase-like protein 93.6 0.18 4E-06 51.5 6.9 36 164-201 109-144 (383)
438 PF13086 AAA_11: AAA domain; P 93.6 0.14 3E-06 49.7 6.1 52 178-229 19-75 (236)
439 PRK04182 cytidylate kinase; Pr 93.6 0.063 1.4E-06 49.7 3.4 24 178-201 2-25 (180)
440 KOG0727 26S proteasome regulat 93.6 0.49 1.1E-05 44.9 9.0 73 174-267 187-259 (408)
441 TIGR03498 FliI_clade3 flagella 93.6 0.27 5.9E-06 51.7 8.3 88 177-268 141-242 (418)
442 PF00158 Sigma54_activat: Sigm 93.6 0.11 2.4E-06 47.5 4.8 70 157-229 1-72 (168)
443 COG1126 GlnQ ABC-type polar am 93.5 0.059 1.3E-06 50.1 3.0 34 177-213 29-62 (240)
444 PRK14737 gmk guanylate kinase; 93.5 0.063 1.4E-06 50.0 3.3 26 175-200 3-28 (186)
445 PF05970 PIF1: PIF1-like helic 93.5 0.19 4.2E-06 52.4 7.2 41 162-202 8-48 (364)
446 PRK08058 DNA polymerase III su 93.5 0.42 9.1E-06 49.1 9.6 45 157-201 7-53 (329)
447 cd02029 PRK_like Phosphoribulo 93.5 0.32 6.9E-06 47.5 8.0 25 178-202 1-25 (277)
448 PRK09435 membrane ATPase/prote 93.5 0.21 4.5E-06 50.9 7.2 37 166-202 44-82 (332)
449 PF06068 TIP49: TIP49 C-termin 93.5 0.12 2.5E-06 52.4 5.2 53 154-206 23-80 (398)
450 PRK10416 signal recognition pa 93.5 0.084 1.8E-06 53.6 4.3 28 175-202 113-140 (318)
451 PRK03731 aroL shikimate kinase 93.5 0.071 1.5E-06 49.0 3.5 25 177-201 3-27 (171)
452 PRK08769 DNA polymerase III su 93.5 1.7 3.7E-05 44.1 13.6 40 162-201 11-51 (319)
453 PLN02200 adenylate kinase fami 93.5 0.073 1.6E-06 51.6 3.7 26 175-200 42-67 (234)
454 PRK04196 V-type ATP synthase s 93.5 0.29 6.4E-06 52.1 8.4 91 177-268 144-252 (460)
455 PF03193 DUF258: Protein of un 93.4 0.12 2.7E-06 46.4 4.7 34 164-200 26-59 (161)
456 PRK07594 type III secretion sy 93.4 0.32 6.9E-06 51.3 8.5 89 176-268 155-257 (433)
457 TIGR03496 FliI_clade1 flagella 93.4 0.21 4.5E-06 52.5 7.2 87 177-267 138-238 (411)
458 PF13521 AAA_28: AAA domain; P 93.4 0.068 1.5E-06 48.7 3.2 21 179-199 2-22 (163)
459 PLN02165 adenylate isopentenyl 93.4 0.099 2.1E-06 52.8 4.5 29 173-201 40-68 (334)
460 TIGR02173 cyt_kin_arch cytidyl 93.4 0.074 1.6E-06 48.8 3.5 23 178-200 2-24 (171)
461 PRK05922 type III secretion sy 93.4 0.48 1E-05 49.9 9.7 89 176-268 157-259 (434)
462 cd03116 MobB Molybdenum is an 93.4 0.12 2.5E-06 46.7 4.6 27 177-203 2-28 (159)
463 cd03269 ABC_putative_ATPase Th 93.4 0.066 1.4E-06 51.2 3.2 34 177-213 27-60 (210)
464 PF02374 ArsA_ATPase: Anion-tr 93.3 0.15 3.2E-06 51.6 5.8 39 177-217 2-40 (305)
465 PRK06731 flhF flagellar biosyn 93.3 0.69 1.5E-05 45.7 10.3 89 175-266 74-164 (270)
466 cd02040 NifH NifH gene encodes 93.3 0.16 3.4E-06 50.7 6.0 42 177-220 2-43 (270)
467 cd03222 ABC_RNaseL_inhibitor T 93.3 0.071 1.5E-06 49.1 3.1 25 177-201 26-50 (177)
468 cd01134 V_A-ATPase_A V/A-type 93.3 0.19 4E-06 50.9 6.3 47 177-227 158-205 (369)
469 KOG0735 AAA+-type ATPase [Post 93.3 0.23 5.1E-06 54.0 7.3 69 178-267 703-771 (952)
470 PRK14493 putative bifunctional 93.3 0.082 1.8E-06 52.4 3.8 28 177-204 2-29 (274)
471 COG0703 AroK Shikimate kinase 93.3 0.073 1.6E-06 48.1 3.1 26 177-202 3-28 (172)
472 KOG0651 26S proteasome regulat 93.3 0.21 4.5E-06 49.0 6.3 28 176-203 166-193 (388)
473 PRK09099 type III secretion sy 93.3 0.28 6.1E-06 51.8 7.9 90 175-268 162-265 (441)
474 PRK05800 cobU adenosylcobinami 93.3 0.25 5.4E-06 45.2 6.6 23 178-200 3-25 (170)
475 PRK07721 fliI flagellum-specif 93.2 0.18 3.9E-06 53.4 6.4 92 174-268 156-260 (438)
476 cd01122 GP4d_helicase GP4d_hel 93.2 0.69 1.5E-05 46.1 10.5 51 177-230 31-81 (271)
477 cd00984 DnaB_C DnaB helicase C 93.2 0.84 1.8E-05 44.6 10.9 49 177-228 14-62 (242)
478 PLN02796 D-glycerate 3-kinase 93.2 0.11 2.5E-06 52.6 4.7 28 175-202 99-126 (347)
479 COG0552 FtsY Signal recognitio 93.2 0.75 1.6E-05 46.0 10.1 42 174-218 137-178 (340)
480 PRK15453 phosphoribulokinase; 93.1 0.1 2.2E-06 51.3 4.1 28 174-201 3-30 (290)
481 TIGR02858 spore_III_AA stage I 93.1 0.12 2.7E-06 51.0 4.8 37 166-202 100-137 (270)
482 cd03265 ABC_DrrA DrrA is the A 93.1 0.077 1.7E-06 51.1 3.3 33 177-212 27-59 (220)
483 PRK14738 gmk guanylate kinase; 93.1 0.08 1.7E-06 50.3 3.3 26 174-199 11-36 (206)
484 cd03238 ABC_UvrA The excision 93.1 0.075 1.6E-06 48.9 3.0 22 177-198 22-43 (176)
485 cd03225 ABC_cobalt_CbiO_domain 93.1 0.073 1.6E-06 50.9 3.1 25 177-201 28-52 (211)
486 TIGR03574 selen_PSTK L-seryl-t 93.1 0.071 1.5E-06 52.4 3.1 25 178-202 1-25 (249)
487 cd03255 ABC_MJ0796_Lo1CDE_FtsE 93.1 0.073 1.6E-06 51.2 3.1 25 177-201 31-55 (218)
488 TIGR01166 cbiO cobalt transpor 93.1 0.074 1.6E-06 49.9 3.1 25 177-201 19-43 (190)
489 PF13479 AAA_24: AAA domain 93.1 0.34 7.5E-06 46.3 7.7 19 178-196 5-23 (213)
490 PRK06793 fliI flagellum-specif 93.1 0.21 4.6E-06 52.5 6.6 89 176-268 156-258 (432)
491 cd03229 ABC_Class3 This class 93.1 0.077 1.7E-06 49.1 3.1 24 177-200 27-50 (178)
492 COG0055 AtpD F0F1-type ATP syn 93.1 0.26 5.5E-06 49.6 6.7 89 177-266 148-251 (468)
493 PRK06761 hypothetical protein; 93.1 0.084 1.8E-06 52.3 3.4 26 177-202 4-29 (282)
494 COG0465 HflB ATP-dependent Zn 93.1 0.21 4.7E-06 54.3 6.8 50 154-203 149-210 (596)
495 TIGR01650 PD_CobS cobaltochela 93.1 0.33 7.3E-06 48.9 7.7 47 152-201 43-89 (327)
496 PRK05688 fliI flagellum-specif 93.1 0.37 8E-06 51.0 8.3 89 176-268 168-270 (451)
497 PRK14532 adenylate kinase; Pro 93.0 0.078 1.7E-06 49.6 3.1 22 179-200 3-24 (188)
498 COG0237 CoaE Dephospho-CoA kin 93.0 0.082 1.8E-06 49.6 3.2 23 176-198 2-24 (201)
499 cd03114 ArgK-like The function 93.0 0.093 2E-06 46.8 3.4 26 178-203 1-26 (148)
500 cd01983 Fer4_NifH The Fer4_Nif 93.0 0.1 2.2E-06 42.4 3.4 25 178-202 1-25 (99)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=3.1e-75 Score=650.02 Aligned_cols=628 Identities=26% Similarity=0.374 Sum_probs=490.4
Q ss_pred chhhHhhhhhcccccchHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhcCCcchHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 047163 16 KSLFKPIKRQISYVFKYQSYIEELKDQVKQLEHKRERVKIPVHHATQQGNEIYKDVADWLNSVKEFAQGAAKSIIDDEDR 95 (658)
Q Consensus 16 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~i~~~l~~a~~~~~~~~~~~~~Wl~~l~~~~~~~~ed~ld~~~~ 95 (658)
+++...+.++...+. +.++.+..|++.|..++.++++++.+ +.....+..|...+++++|++ +|.++.+..
T Consensus 10 ~~~~~~l~~~~~~~~-------~~~~~i~~Lk~~L~~l~~~l~d~~a~-~~~~~~~~~~~e~~~~~~~~~-e~~~~~~~v 80 (889)
T KOG4658|consen 10 EKLDQLLNRESECLD-------GKDNYILELKENLKALQSALEDLDAK-RDDLERRVNWEEDVGDLVYLA-EDIIWLFLV 80 (889)
T ss_pred hhHHHHHHHHHHHHh-------chHHHHHHHHHHHHHHHHHHHHHHhh-cchHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 344555555555444 44678888889999999999999988 455677889999999999999 999985421
Q ss_pred -----------------hhhhcccCCC-CChhHHhHhHHHHHHHHHHHHHHHhhCCCCccccc-CCccccccCccccccc
Q 047163 96 -----------------AKKFCFKGLC-PNLISCYKLSKQAATAADTAASLVKEGNFCDVSYR-SAPKRAKHMQVKDFEA 156 (658)
Q Consensus 96 -----------------~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~l~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 156 (658)
.+..|+.+.+ .++...+++++++-++...++.+..++.+..+... .++...+..+......
T Consensus 81 ~~~~~~~~~~l~~~~~~~~~~c~~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 160 (889)
T KOG4658|consen 81 EEIERKANDLLSTRSVERQRLCLCGFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGESLDPREKVETRPIQSESD 160 (889)
T ss_pred HHHHHHHhHHhhhhHHHHHHHhhhhhHhHhhhhhHhHHHHHHHHHHHHHHhccccceecccccccchhhcccCCCCcccc
Confidence 1112322222 34555666777777777777777766556555432 1222122222222333
Q ss_pred ccchHHHHHHHHHHhccCCccEEEEEcCCCChHHHHHHHHHHHhh-hccCCCEEEEEEEcCCCCHHHHHHHHHHhcCCCC
Q 047163 157 FDSKMEVFQDVMEALKDDKLNIIGVYGMGGVGKTTLVKQVAKQVM-EDKLFDKVVMAEVTQNPDHHKIQDKLAFGLGMEF 235 (658)
Q Consensus 157 ~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~-~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~ 235 (658)
+|.+..++++.+.|.+++..+++|+||||+||||||+.++|+.. ++.+|+.++||+||+.++...++++|+..++...
T Consensus 161 -VG~e~~~~kl~~~L~~d~~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~~~ 239 (889)
T KOG4658|consen 161 -VGLETMLEKLWNRLMEDDVGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLGLLD 239 (889)
T ss_pred -ccHHHHHHHHHHHhccCCCCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHhccCC
Confidence 99999999999999977779999999999999999999999998 8999999999999999999999999999887743
Q ss_pred CC--CCCHHHHHHHHHHHHhcCCeEEEEEecCCcccCcccccCcccCCCcc-----------------c--------ccc
Q 047163 236 GF--NENMFQRASRLCERLKKEKRLLIILDNIWIELEFDKIGIPSGNVEKE-----------------R--------TDA 288 (658)
Q Consensus 236 ~~--~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~~-----------------~--------~~~ 288 (658)
.. .....+.+..+.+.|+ +|||||||||||+..+|+.++.|+|....| + ...
T Consensus 240 ~~~~~~~~~~~~~~i~~~L~-~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~L~ 318 (889)
T KOG4658|consen 240 EEWEDKEEDELASKLLNLLE-GKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIEVECLT 318 (889)
T ss_pred cccchhhHHHHHHHHHHHhc-cCceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCccccccccC
Confidence 31 2233577888999998 699999999999999999999999998665 1 112
Q ss_pred chhhHHhhhccC---------CccHHHHHHHHHcCCchhHHHHHHHHhccC-ChHHHHHHHHHHhcCCCCCCCchhHHHH
Q 047163 289 RSRCTIILTKTS---------TIQPIADEIVEICGGLPVAVTTVANALKSK-SLDIWKDALNQLRSSNPREIDGMDKKVY 358 (658)
Q Consensus 289 ~~~~~~Lf~~~~---------~~~~~~~~i~~~c~glPLai~~~g~~L~~~-~~~~w~~~l~~l~~~~~~~~~~~~~~i~ 358 (658)
+.+||.||.+.+ .++++|++++++|+|+|||++++|+.|+.+ +..+|+++.+.+......+.++.++.+.
T Consensus 319 ~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~ 398 (889)
T KOG4658|consen 319 PEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEESIL 398 (889)
T ss_pred ccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhhhH
Confidence 233999999988 368999999999999999999999999999 7889999999988875665666788999
Q ss_pred HHHHhhHhcCCchhHHHHHHHhcccccCCcccHHHHHHHHhhhcccccccCHHHHHHHHHHHHHHHHHccccccCC---C
Q 047163 359 TSIELSYNLLASKEAKSLFRLCGLYNEGHAIQVASILRYGMGWGLLENVYTLEEARSRVHRLIDNLKSSCLLLDGD---A 435 (658)
Q Consensus 359 ~~l~~sy~~L~~~~~k~~fl~~~~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~~~~~L~~~~ll~~~~---~ 435 (658)
+++.+||+.||++ +|.||+|||+||+||+|+++.|+.+|+||||+.+....+.+++.+++++.+|+.+++++... +
T Consensus 399 ~iLklSyd~L~~~-lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~~~ 477 (889)
T KOG4658|consen 399 PILKLSYDNLPEE-LKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDEGR 477 (889)
T ss_pred HhhhccHhhhhHH-HHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccccc
Confidence 9999999999976 99999999999999999999999999999999875556667778889999999999998764 4
Q ss_pred CCceeecHHHHHHHHHHHc-----cCcEEEcCc-cchhhhhhhhhcccCceEEeccCCCCCcCCCccCCCCCceEEEecC
Q 047163 436 KDEAKMYDVIHVVAVSIAT-----GEHMFNIPN-AANEEKKMEEIKRKGPIAISLPHRDIQELPERLQCPNLQLFLFFGK 509 (658)
Q Consensus 436 ~~~~~~h~lv~~~~~~~~~-----~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~ 509 (658)
...|+|||+||++|.++++ +++.+...+ .....+....+. .+|++++.++.+..++....+++|++|.+.+|
T Consensus 478 ~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~--~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n 555 (889)
T KOG4658|consen 478 KETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWN--SVRRMSLMNNKIEHIAGSSENPKLRTLLLQRN 555 (889)
T ss_pred eeEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchh--heeEEEEeccchhhccCCCCCCccceEEEeec
Confidence 4789999999999999999 666444432 112233333333 78999999999999999999999999999999
Q ss_pred CCCCCccchHHhcCCCCCcEEEccCCC-CCCCccccccCCCcceEEccCCCCCCc-hhhhccCCCcEEEccCcc-CCccc
Q 047163 510 GYGPMQISDLFFEGTKELKDLSLTRIP-FSSLPSSLGSLINLGTLCLEDCPRNDI-AILRQLKKLEILRLRHSY-TERLP 586 (658)
Q Consensus 510 ~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~lp~~i~~l~~L~~L~L~~~~~~~l-~~~~~l~~L~~L~l~~~~-~~~lp 586 (658)
......++..+|..++.|++|||++|. +..+|.+|+.|.|||||+|+++.+..+ .++++|.+|++|++..+. ...+|
T Consensus 556 ~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~ 635 (889)
T KOG4658|consen 556 SDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIP 635 (889)
T ss_pred chhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheecccccccccccc
Confidence 643667888899999999999999765 679999999999999999999999998 899999999999999884 45556
Q ss_pred hhhcCCCCCcEEcccCcc-cccccChhhhcCCCCCcEEEcccCCC----Cc----------------ccccCCCccchhh
Q 047163 587 LEIGQLTRLRLLDLSNCW-RLKVIAPNVISKLSRLEELYMGNSFP----KW----------------DKVEGGSNASLAE 645 (658)
Q Consensus 587 ~~~~~l~~L~~L~l~~~~-~l~~~~~~~i~~l~~L~~L~l~~~~~----~~----------------~~~~~~~~~~l~~ 645 (658)
.....|++|++|.+.... ......-..+.+|..|+.|.+..++. .. .......+.++..
T Consensus 636 ~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~ 715 (889)
T KOG4658|consen 636 GILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGS 715 (889)
T ss_pred chhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhhcccccceeeccccc
Confidence 666679999999987652 11112222244555555555543321 00 0001133456677
Q ss_pred cCCCCccccCCC
Q 047163 646 LKGLSKLDTGHN 657 (658)
Q Consensus 646 l~~L~~L~l~~N 657 (658)
+.+|+.|.+.++
T Consensus 716 l~~L~~L~i~~~ 727 (889)
T KOG4658|consen 716 LGNLEELSILDC 727 (889)
T ss_pred ccCcceEEEEcC
Confidence 778888777654
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=1.2e-47 Score=452.26 Aligned_cols=464 Identities=20% Similarity=0.291 Sum_probs=304.5
Q ss_pred cccccccchHHHHHHHHHHhc--cCCccEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEE---cCCC--------
Q 047163 152 KDFEAFDSKMEVFQDVMEALK--DDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEV---TQNP-------- 218 (658)
Q Consensus 152 ~~~~~~~gr~~~~~~l~~~l~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v---~~~~-------- 218 (658)
.+..+++||++.++++..++. .+++++|+||||||+||||||+.+|++... +|++.+|+.- +...
T Consensus 181 ~~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~--~F~g~vfv~~~~v~~~~~~~~~~~~ 258 (1153)
T PLN03210 181 NDFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSR--QFQSSVFIDRAFISKSMEIYSSANP 258 (1153)
T ss_pred cccccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHHhh--cCCeEEEeeccccccchhhcccccc
Confidence 456679999999999998875 567899999999999999999999998764 5888777642 1110
Q ss_pred ---C-HHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhcCCeEEEEEecCCcccCcccccCcccCCCcc----------
Q 047163 219 ---D-HHKIQDKLAFGLGMEFGFNENMFQRASRLCERLKKEKRLLIILDNIWIELEFDKIGIPSGNVEKE---------- 284 (658)
Q Consensus 219 ---~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~~---------- 284 (658)
+ ...+++.++..+......... ....+++.+. +||+||||||||+..+|+.+.........|
T Consensus 259 ~~~~~~~~l~~~~l~~il~~~~~~~~---~~~~~~~~L~-~krvLLVLDdv~~~~~l~~L~~~~~~~~~GsrIIiTTrd~ 334 (1153)
T PLN03210 259 DDYNMKLHLQRAFLSEILDKKDIKIY---HLGAMEERLK-HRKVLIFIDDLDDQDVLDALAGQTQWFGSGSRIIVITKDK 334 (1153)
T ss_pred cccchhHHHHHHHHHHHhCCCCcccC---CHHHHHHHHh-CCeEEEEEeCCCCHHHHHHHHhhCccCCCCcEEEEEeCcH
Confidence 1 123445555444322211111 1245667777 699999999999999998886554433333
Q ss_pred ------cccc--------chhhHHhhhccC--------CccHHHHHHHHHcCCchhHHHHHHHHhccCChHHHHHHHHHH
Q 047163 285 ------RTDA--------RSRCTIILTKTS--------TIQPIADEIVEICGGLPVAVTTVANALKSKSLDIWKDALNQL 342 (658)
Q Consensus 285 ------~~~~--------~~~~~~Lf~~~~--------~~~~~~~~i~~~c~glPLai~~~g~~L~~~~~~~w~~~l~~l 342 (658)
+... ..+||+||+++| .+.+++++|+++|+|+||||+++|++|++++..+|.+++.++
T Consensus 335 ~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k~~~~W~~~l~~L 414 (1153)
T PLN03210 335 HFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLNVLGSYLRGRDKEDWMDMLPRL 414 (1153)
T ss_pred HHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 1111 223999999887 356789999999999999999999999999999999999998
Q ss_pred hcCCCCCCCchhHHHHHHHHhhHhcCCchhHHHHHHHhcccccCCcccHHHHHHHHhhhcccccccCHHHHHHHHHHHHH
Q 047163 343 RSSNPREIDGMDKKVYTSIELSYNLLASKEAKSLFRLCGLYNEGHAIQVASILRYGMGWGLLENVYTLEEARSRVHRLID 422 (658)
Q Consensus 343 ~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~~fl~~~~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~~~~ 422 (658)
+... +..+..+|++||++|+++..|.||+++|+|+.+..++ .+..|++.+.... ...++
T Consensus 415 ~~~~-------~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~---~v~~~l~~~~~~~-----------~~~l~ 473 (1153)
T PLN03210 415 RNGL-------DGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVN---DIKLLLANSDLDV-----------NIGLK 473 (1153)
T ss_pred HhCc-------cHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHH---HHHHHHHhcCCCc-----------hhChH
Confidence 7532 3479999999999998644899999999999887443 3556777654321 12477
Q ss_pred HHHHccccccCCCCCceeecHHHHHHHHHHHccCcEEEcCccchhhhhhh-------hhcccCceEEeccCCCCCcCC--
Q 047163 423 NLKSSCLLLDGDAKDEAKMYDVIHVVAVSIATGEHMFNIPNAANEEKKME-------EIKRKGPIAISLPHRDIQELP-- 493 (658)
Q Consensus 423 ~L~~~~ll~~~~~~~~~~~h~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~l~l~~~~~~~~~-- 493 (658)
.|++++|++.. ...++||||+|++|++++.++. ....+....|...+ ...+.+++.+++..+.+..+.
T Consensus 474 ~L~~ksLi~~~--~~~~~MHdLl~~~~r~i~~~~~-~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~ 550 (1153)
T PLN03210 474 NLVDKSLIHVR--EDIVEMHSLLQEMGKEIVRAQS-NEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIH 550 (1153)
T ss_pred HHHhcCCEEEc--CCeEEhhhHHHHHHHHHHHhhc-CCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeec
Confidence 89999999875 3569999999999999997763 11111111111111 011225666666544443211
Q ss_pred C--ccCCCCCceEEEecCCC-----------------------------CCCccchHHhcCCCCCcEEEccCCCCCCCcc
Q 047163 494 E--RLQCPNLQLFLFFGKGY-----------------------------GPMQISDLFFEGTKELKDLSLTRIPFSSLPS 542 (658)
Q Consensus 494 ~--~~~~~~L~~L~l~~~~~-----------------------------~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~ 542 (658)
. +..+++|+.|.++.+.. ....+|..+ .+.+|+.|++.++.+..+|.
T Consensus 551 ~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f--~~~~L~~L~L~~s~l~~L~~ 628 (1153)
T PLN03210 551 ENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF--RPENLVKLQMQGSKLEKLWD 628 (1153)
T ss_pred HHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC--CccCCcEEECcCcccccccc
Confidence 1 12455555555543311 122333322 34566666666666666666
Q ss_pred ccccCCCcceEEccCCC-CCCchhhhccCCCcEEEccCc-cCCccchhhcCCCCCcEEcccCcccccccChhhhcCCCCC
Q 047163 543 SLGSLINLGTLCLEDCP-RNDIAILRQLKKLEILRLRHS-YTERLPLEIGQLTRLRLLDLSNCWRLKVIAPNVISKLSRL 620 (658)
Q Consensus 543 ~i~~l~~L~~L~L~~~~-~~~l~~~~~l~~L~~L~l~~~-~~~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L 620 (658)
.+..+++|++|+|++|. +..++.++.+++|++|+|++| .+..+|..++++++|+.|++++|..++.+|.. + ++++|
T Consensus 629 ~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~-i-~l~sL 706 (1153)
T PLN03210 629 GVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTG-I-NLKSL 706 (1153)
T ss_pred ccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCc-C-CCCCC
Confidence 66666667777766653 444466666667777777666 45666766777777777777776666666654 2 56677
Q ss_pred cEEEcccCCCCcccccCCCccchhhcCCCCccccCCC
Q 047163 621 EELYMGNSFPKWDKVEGGSNASLAELKGLSKLDTGHN 657 (658)
Q Consensus 621 ~~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~N 657 (658)
+.|++++|. ..+..|.. ..+|+.|++++|
T Consensus 707 ~~L~Lsgc~-----~L~~~p~~---~~nL~~L~L~~n 735 (1153)
T PLN03210 707 YRLNLSGCS-----RLKSFPDI---STNISWLDLDET 735 (1153)
T ss_pred CEEeCCCCC-----Cccccccc---cCCcCeeecCCC
Confidence 777776653 12223322 345666666655
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=1.5e-37 Score=314.92 Aligned_cols=245 Identities=28% Similarity=0.523 Sum_probs=196.8
Q ss_pred hHHHHHHHHHHhcc--CCccEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCCCCHHHHHHHHHHhcCCCCC-
Q 047163 160 KMEVFQDVMEALKD--DKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQNPDHHKIQDKLAFGLGMEFG- 236 (658)
Q Consensus 160 r~~~~~~l~~~l~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~- 236 (658)
||.++++|.++|.+ ++.++|+|+||||+||||||+.++++...+.+|+.++|++++...+..++++.|+..++....
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~ 80 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSS 80 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-ST
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccc
Confidence 78999999999986 789999999999999999999999997777889999999999999999999999999987743
Q ss_pred --CCCCHHHHHHHHHHHHhcCCeEEEEEecCCcccCcccccCcccCCCcc-------------------------ccccc
Q 047163 237 --FNENMFQRASRLCERLKKEKRLLIILDNIWIELEFDKIGIPSGNVEKE-------------------------RTDAR 289 (658)
Q Consensus 237 --~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~~-------------------------~~~~~ 289 (658)
...+..+....+.+.+. ++++||||||||+...|+.+...++....+ .....
T Consensus 81 ~~~~~~~~~~~~~l~~~L~-~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~L~~ 159 (287)
T PF00931_consen 81 ISDPKDIEELQDQLRELLK-DKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEPLSE 159 (287)
T ss_dssp SSCCSSHHHHHHHHHHHHC-CTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS--H
T ss_pred cccccccccccccchhhhc-cccceeeeeeeccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 24566778888999888 589999999999999998887666544333 11122
Q ss_pred hhhHHhhhccC---------CccHHHHHHHHHcCCchhHHHHHHHHhccC-ChHHHHHHHHHHhcCCCCCCCchhHHHHH
Q 047163 290 SRCTIILTKTS---------TIQPIADEIVEICGGLPVAVTTVANALKSK-SLDIWKDALNQLRSSNPREIDGMDKKVYT 359 (658)
Q Consensus 290 ~~~~~Lf~~~~---------~~~~~~~~i~~~c~glPLai~~~g~~L~~~-~~~~w~~~l~~l~~~~~~~~~~~~~~i~~ 359 (658)
.+|++||.+.+ ..++.+++|+++|+|+||||+++|++|+.+ +..+|.++++++...... ..+....+..
T Consensus 160 ~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~-~~~~~~~~~~ 238 (287)
T PF00931_consen 160 EEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRE-SRDYDRSVFS 238 (287)
T ss_dssp HHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTC-SSGSCHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccc
Confidence 33999999876 357889999999999999999999999766 788999999887765432 2234678999
Q ss_pred HHHhhHhcCCchhHHHHHHHhcccccCCcccHHHHHHHHhhhcccccc
Q 047163 360 SIELSYNLLASKEAKSLFRLCGLYNEGHAIQVASILRYGMGWGLLENV 407 (658)
Q Consensus 360 ~l~~sy~~L~~~~~k~~fl~~~~fp~~~~i~~~~li~~w~a~g~i~~~ 407 (658)
++..||+.||++ +|.||+|||+||+++.|+++.++++|+++|++.+.
T Consensus 239 ~l~~s~~~L~~~-~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~~ 285 (287)
T PF00931_consen 239 ALELSYDSLPDE-LRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISSK 285 (287)
T ss_dssp HHHHHHHSSHTC-CHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC--
T ss_pred cceechhcCCcc-HHHHHhhCcCCCCCceECHHHHHHHHHHCCCCccc
Confidence 999999999997 99999999999999999999999999999998753
No 4
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.55 E-value=4.9e-16 Score=159.07 Aligned_cols=174 Identities=24% Similarity=0.288 Sum_probs=142.3
Q ss_pred CceEEeccCCCCCcCCCcc-CCCCCceEEEecCCCCCCccchHHhcCCCCCcEEEccCCCCCCCccccccCCCcceEEcc
Q 047163 478 GPIAISLPHRDIQELPERL-QCPNLQLFLFFGKGYGPMQISDLFFEGTKELKDLSLTRIPFSSLPSSLGSLINLGTLCLE 556 (658)
Q Consensus 478 ~~~~l~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~L~ 556 (658)
++.|+++.+|.+..+...+ .++.||++.+..|......+|+++| .++.|.+||||+|.+...|..+..-+++-+|+|+
T Consensus 56 kLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF-~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS 134 (1255)
T KOG0444|consen 56 KLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIF-RLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLS 134 (1255)
T ss_pred hhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhc-ccccceeeecchhhhhhcchhhhhhcCcEEEEcc
Confidence 7899999999887665544 8999999999999988888999875 5899999999999999999999999999999999
Q ss_pred CCCCCCc--hhhhccCCCcEEEccCccCCccchhhcCCCCCcEEcccCcccccccChhhhcCCCCCcEEEcccCCCCccc
Q 047163 557 DCPRNDI--AILRQLKKLEILRLRHSYTERLPLEIGQLTRLRLLDLSNCWRLKVIAPNVISKLSRLEELYMGNSFPKWDK 634 (658)
Q Consensus 557 ~~~~~~l--~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~~~~~ 634 (658)
+|+|+.+ +-+-+|..|-+|||++|.+..+|+.+..|.+|++|.|++| .+.-+-...+..+++|++|.++++..
T Consensus 135 ~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~N-PL~hfQLrQLPsmtsL~vLhms~TqR---- 209 (1255)
T KOG0444|consen 135 YNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNN-PLNHFQLRQLPSMTSLSVLHMSNTQR---- 209 (1255)
T ss_pred cCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCC-hhhHHHHhcCccchhhhhhhcccccc----
Confidence 9999998 6778899999999999999999999999999999999999 55544444466677788888877532
Q ss_pred ccCCCccchhhcCCCCccccCCC
Q 047163 635 VEGGSNASLAELKGLSKLDTGHN 657 (658)
Q Consensus 635 ~~~~~~~~l~~l~~L~~L~l~~N 657 (658)
....+|.++..|.+|..+++++|
T Consensus 210 Tl~N~Ptsld~l~NL~dvDlS~N 232 (1255)
T KOG0444|consen 210 TLDNIPTSLDDLHNLRDVDLSEN 232 (1255)
T ss_pred hhhcCCCchhhhhhhhhcccccc
Confidence 11234555555555555555555
No 5
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.54 E-value=2e-16 Score=136.70 Aligned_cols=145 Identities=23% Similarity=0.348 Sum_probs=91.3
Q ss_pred CceEEeccCCCCCcCCCcc-CCCCCceEEEecCCCCCCccchHHhcCCCCCcEEEccCCCCCCCccccccCCCcceEEcc
Q 047163 478 GPIAISLPHRDIQELPERL-QCPNLQLFLFFGKGYGPMQISDLFFEGTKELKDLSLTRIPFSSLPSSLGSLINLGTLCLE 556 (658)
Q Consensus 478 ~~~~l~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~L~ 556 (658)
.+.++.+++|.+..+|+.+ .+.+|+.|++++|. ...+|.+ ++.++.|+.|+++-|.+..+|..++.++.|+.|+|.
T Consensus 34 ~ITrLtLSHNKl~~vppnia~l~nlevln~~nnq--ie~lp~~-issl~klr~lnvgmnrl~~lprgfgs~p~levldlt 110 (264)
T KOG0617|consen 34 NITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQ--IEELPTS-ISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLT 110 (264)
T ss_pred hhhhhhcccCceeecCCcHHHhhhhhhhhcccch--hhhcChh-hhhchhhhheecchhhhhcCccccCCCchhhhhhcc
Confidence 5666666666666665544 66666666666664 4445544 356666666666666666666666666666666666
Q ss_pred CCCCCC--c-hhhhccCCCcEEEccCccCCccchhhcCCCCCcEEcccCcccccccChhhhcCCCCCcEEEccc
Q 047163 557 DCPRND--I-AILRQLKKLEILRLRHSYTERLPLEIGQLTRLRLLDLSNCWRLKVIAPNVISKLSRLEELYMGN 627 (658)
Q Consensus 557 ~~~~~~--l-~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~ 627 (658)
+|++.. + ..|..+.-|+.|.++.|..+-+|+.+++|++|+.|.+.+| .+-++|.+ ++.++.|+.|++.+
T Consensus 111 ynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdn-dll~lpke-ig~lt~lrelhiqg 182 (264)
T KOG0617|consen 111 YNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDN-DLLSLPKE-IGDLTRLRELHIQG 182 (264)
T ss_pred ccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccC-chhhCcHH-HHHHHHHHHHhccc
Confidence 666543 2 4455555666666666666666666666666666666666 55556655 66666666666666
No 6
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.51 E-value=6.8e-14 Score=165.94 Aligned_cols=172 Identities=26% Similarity=0.277 Sum_probs=92.7
Q ss_pred CceEEeccCCCCCcCCCccCCCCCceEEEecCCCCCCccchHHhcCCCCCcEEEccCCCCC-CCccccccCCCcceEEcc
Q 047163 478 GPIAISLPHRDIQELPERLQCPNLQLFLFFGKGYGPMQISDLFFEGTKELKDLSLTRIPFS-SLPSSLGSLINLGTLCLE 556 (658)
Q Consensus 478 ~~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~lp~~i~~l~~L~~L~L~ 556 (658)
+++++.+++|.+....+...+++|++|++++|... ..+|.. +..+++|++|++++|.+. .+|..++++++|++|+|+
T Consensus 119 ~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~-~~~p~~-~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 196 (968)
T PLN00113 119 SLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLS-GEIPND-IGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLA 196 (968)
T ss_pred CCCEEECcCCccccccCccccCCCCEEECcCCccc-ccCChH-HhcCCCCCEEECccCcccccCChhhhhCcCCCeeecc
Confidence 56666666665543222334556666666665421 123332 455666666666666654 455666666666666666
Q ss_pred CCCCCCc--hhhhccCCCcEEEccCccCC-ccchhhcCCCCCcEEcccCcccccccChhhhcCCCCCcEEEcccCCCCcc
Q 047163 557 DCPRNDI--AILRQLKKLEILRLRHSYTE-RLPLEIGQLTRLRLLDLSNCWRLKVIAPNVISKLSRLEELYMGNSFPKWD 633 (658)
Q Consensus 557 ~~~~~~l--~~~~~l~~L~~L~l~~~~~~-~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~~~~ 633 (658)
+|.+... ..++++++|++|++++|.+. .+|..++++++|++|++++| .+....|..++++++|++|++++|.
T Consensus 197 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n-~l~~~~p~~l~~l~~L~~L~L~~n~---- 271 (968)
T PLN00113 197 SNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYN-NLTGPIPSSLGNLKNLQYLFLYQNK---- 271 (968)
T ss_pred CCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCc-eeccccChhHhCCCCCCEEECcCCe----
Confidence 6655432 45556666666666665443 44555666666666666665 4443333335555666666655532
Q ss_pred cccCCCccchhhcCCCCccccCCC
Q 047163 634 KVEGGSNASLAELKGLSKLDTGHN 657 (658)
Q Consensus 634 ~~~~~~~~~l~~l~~L~~L~l~~N 657 (658)
+.+..|..+.++++|++|++++|
T Consensus 272 -l~~~~p~~l~~l~~L~~L~Ls~n 294 (968)
T PLN00113 272 -LSGPIPPSIFSLQKLISLDLSDN 294 (968)
T ss_pred -eeccCchhHhhccCcCEEECcCC
Confidence 44444444444555555544444
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.50 E-value=3.5e-15 Score=152.95 Aligned_cols=181 Identities=23% Similarity=0.325 Sum_probs=137.0
Q ss_pred hhcccCceEEeccCCCCCcCCCcc-CCCCCceEEEecCCCCCCccchHHhcCCCCCcEEEccCCCCCCCccccccCCCcc
Q 047163 473 EIKRKGPIAISLPHRDIQELPERL-QCPNLQLFLFFGKGYGPMQISDLFFEGTKELKDLSLTRIPFSSLPSSLGSLINLG 551 (658)
Q Consensus 473 ~~~~~~~~~l~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~i~~l~~L~ 551 (658)
+...+.+..+.+++|.+.+.|..+ ..+++-.|++++|. +..||...|-++..|-+||||+|.+..+|+.+..|.+|+
T Consensus 99 iF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~--IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~Lq 176 (1255)
T KOG0444|consen 99 IFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNN--IETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQ 176 (1255)
T ss_pred hcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCc--cccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhh
Confidence 333347888999999999999887 67888999999996 778999999999999999999999999999999999999
Q ss_pred eEEccCCCCCCc--hhhhccCCCcEEEccCc--cCCccchhhcCCCCCcEEcccCcccccccChhhhcCCCCCcEEEccc
Q 047163 552 TLCLEDCPRNDI--AILRQLKKLEILRLRHS--YTERLPLEIGQLTRLRLLDLSNCWRLKVIAPNVISKLSRLEELYMGN 627 (658)
Q Consensus 552 ~L~L~~~~~~~l--~~~~~l~~L~~L~l~~~--~~~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~ 627 (658)
+|.|++|++... .++..+.+|++|.++++ .+..+|.++..|.||+.++++.| ++..+|.. +-++++|+.|++++
T Consensus 177 tL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N-~Lp~vPec-ly~l~~LrrLNLS~ 254 (1255)
T KOG0444|consen 177 TLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSEN-NLPIVPEC-LYKLRNLRRLNLSG 254 (1255)
T ss_pred hhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhcccccc-CCCcchHH-HhhhhhhheeccCc
Confidence 999999987665 66667777777777776 34556777777777777777777 67766665 56677777777776
Q ss_pred CCCCc------------------ccccCCCccchhhcCCCCccccCCCC
Q 047163 628 SFPKW------------------DKVEGGSNASLAELKGLSKLDTGHNR 658 (658)
Q Consensus 628 ~~~~~------------------~~~~~~~~~~l~~l~~L~~L~l~~N~ 658 (658)
|..+. |+++ .+|..+..|++|+.|.+.+|+
T Consensus 255 N~iteL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~Nk 302 (1255)
T KOG0444|consen 255 NKITELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNK 302 (1255)
T ss_pred CceeeeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCc
Confidence 54210 1122 456666666666666666553
No 8
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.48 E-value=1.7e-13 Score=162.65 Aligned_cols=171 Identities=24% Similarity=0.320 Sum_probs=132.9
Q ss_pred CceEEeccCCCCC-cCCCcc--CCCCCceEEEecCCCCCCccchHHhcCCCCCcEEEccCCCCC-CCccccccCCCcceE
Q 047163 478 GPIAISLPHRDIQ-ELPERL--QCPNLQLFLFFGKGYGPMQISDLFFEGTKELKDLSLTRIPFS-SLPSSLGSLINLGTL 553 (658)
Q Consensus 478 ~~~~l~l~~~~~~-~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~lp~~i~~l~~L~~L 553 (658)
.++.|.+.+|.+. .+|... .+++|+.|++++|... ..+|. ..+++|++|++++|.+. .+|..++.+++|++|
T Consensus 94 ~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~-~~~p~---~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L 169 (968)
T PLN00113 94 YIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFT-GSIPR---GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVL 169 (968)
T ss_pred CCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccc-cccCc---cccCCCCEEECcCCcccccCChHHhcCCCCCEE
Confidence 6777888777764 455543 6778888888877632 22333 35678888888888876 678888889999999
Q ss_pred EccCCCCCCc--hhhhccCCCcEEEccCccCC-ccchhhcCCCCCcEEcccCcccccccChhhhcCCCCCcEEEcccCCC
Q 047163 554 CLEDCPRNDI--AILRQLKKLEILRLRHSYTE-RLPLEIGQLTRLRLLDLSNCWRLKVIAPNVISKLSRLEELYMGNSFP 630 (658)
Q Consensus 554 ~L~~~~~~~l--~~~~~l~~L~~L~l~~~~~~-~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~ 630 (658)
+|++|.+... ..++++++|++|++++|.+. .+|..++++++|++|++++| .+....|..++++++|++|++++|
T Consensus 170 ~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n-~l~~~~p~~l~~l~~L~~L~L~~n-- 246 (968)
T PLN00113 170 DLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYN-NLSGEIPYEIGGLTSLNHLDLVYN-- 246 (968)
T ss_pred ECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCC-ccCCcCChhHhcCCCCCEEECcCc--
Confidence 9998887543 67888999999999888654 56888899999999999988 666544555889999999999884
Q ss_pred CcccccCCCccchhhcCCCCccccCCCC
Q 047163 631 KWDKVEGGSNASLAELKGLSKLDTGHNR 658 (658)
Q Consensus 631 ~~~~~~~~~~~~l~~l~~L~~L~l~~N~ 658 (658)
.+.+..|..+.++++|+.|++++|+
T Consensus 247 ---~l~~~~p~~l~~l~~L~~L~L~~n~ 271 (968)
T PLN00113 247 ---NLTGPIPSSLGNLKNLQYLFLYQNK 271 (968)
T ss_pred ---eeccccChhHhCCCCCCEEECcCCe
Confidence 4778889899999999999998874
No 9
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.45 E-value=2.2e-15 Score=130.25 Aligned_cols=131 Identities=31% Similarity=0.396 Sum_probs=63.3
Q ss_pred CceEEeccCCCCCcCCCcc-CCCCCceEEEecCCCCCCccchHHhcCCCCCcEEEccCCCCC--CCccccccCCCcceEE
Q 047163 478 GPIAISLPHRDIQELPERL-QCPNLQLFLFFGKGYGPMQISDLFFEGTKELKDLSLTRIPFS--SLPSSLGSLINLGTLC 554 (658)
Q Consensus 478 ~~~~l~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~--~lp~~i~~l~~L~~L~ 554 (658)
++..+.+.+|.++++|..+ .+++|+.|++.-|. ...+|.+ |+.++.|++|||.+|++. .+|..+..+.-|+.|+
T Consensus 57 nlevln~~nnqie~lp~~issl~klr~lnvgmnr--l~~lprg-fgs~p~levldltynnl~e~~lpgnff~m~tlraly 133 (264)
T KOG0617|consen 57 NLEVLNLSNNQIEELPTSISSLPKLRILNVGMNR--LNILPRG-FGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALY 133 (264)
T ss_pred hhhhhhcccchhhhcChhhhhchhhhheecchhh--hhcCccc-cCCCchhhhhhccccccccccCCcchhHHHHHHHHH
Confidence 3444444455555444433 44555555544443 2222332 344555555555555444 3454444455555555
Q ss_pred ccCCCCCCc-hhhhccCCCcEEEccCccCCccchhhcCCCCCcEEcccCcccccccChh
Q 047163 555 LEDCPRNDI-AILRQLKKLEILRLRHSYTERLPLEIGQLTRLRLLDLSNCWRLKVIAPN 612 (658)
Q Consensus 555 L~~~~~~~l-~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~ 612 (658)
|+.|.++-+ +.++++.+||.|.++.|.+-++|..++.|..|+.|++.+| +++.+||+
T Consensus 134 l~dndfe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgn-rl~vlppe 191 (264)
T KOG0617|consen 134 LGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGN-RLTVLPPE 191 (264)
T ss_pred hcCCCcccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccc-eeeecChh
Confidence 555544444 4555555555555555555555555555555555555555 45545444
No 10
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.35 E-value=2.1e-13 Score=139.22 Aligned_cols=173 Identities=21% Similarity=0.209 Sum_probs=82.3
Q ss_pred cCceEEeccCCCCCcCCCcc--CCCCCceEEEecCCCCCCccchHHhcCCCCCcEEEccCCCCCCC-ccccccCCCcceE
Q 047163 477 KGPIAISLPHRDIQELPERL--QCPNLQLFLFFGKGYGPMQISDLFFEGTKELKDLSLTRIPFSSL-PSSLGSLINLGTL 553 (658)
Q Consensus 477 ~~~~~l~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L 553 (658)
.++.++.+.+|.|+.+.... .+.+|-+|.++.|. ...+|...|+++++|+.|+|..|.+... --.|.+|++|+.|
T Consensus 173 ~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNr--ittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nl 250 (873)
T KOG4194|consen 173 VNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNR--ITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNL 250 (873)
T ss_pred CCceEEeeccccccccccccccccchheeeecccCc--ccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhh
Confidence 35666666666666544322 45566666666664 4445555666666666666666655422 1223334444444
Q ss_pred EccCCCCCCc--hhhhccCCCcEEEccCccCCccc-hhhcCCCCCcEEcccCcccccccChhhhcCCCCCcEEEcccCCC
Q 047163 554 CLEDCPRNDI--AILRQLKKLEILRLRHSYTERLP-LEIGQLTRLRLLDLSNCWRLKVIAPNVISKLSRLEELYMGNSFP 630 (658)
Q Consensus 554 ~L~~~~~~~l--~~~~~l~~L~~L~l~~~~~~~lp-~~~~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~ 630 (658)
.|..|.+..+ ..|-.+.++++|+|..|.+.++. .++.+|..|++|+++.| .+..+.+......++|+.|++++
T Consensus 251 klqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~N-aI~rih~d~WsftqkL~~LdLs~--- 326 (873)
T KOG4194|consen 251 KLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYN-AIQRIHIDSWSFTQKLKELDLSS--- 326 (873)
T ss_pred hhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchh-hhheeecchhhhcccceeEeccc---
Confidence 4444444443 23333444444444444444442 23334444444444444 34444433333334444444444
Q ss_pred CcccccCCCccchhhcCCCCccccCCC
Q 047163 631 KWDKVEGGSNASLAELKGLSKLDTGHN 657 (658)
Q Consensus 631 ~~~~~~~~~~~~l~~l~~L~~L~l~~N 657 (658)
|.++.-.+.+|..|..|+.|++++|
T Consensus 327 --N~i~~l~~~sf~~L~~Le~LnLs~N 351 (873)
T KOG4194|consen 327 --NRITRLDEGSFRVLSQLEELNLSHN 351 (873)
T ss_pred --cccccCChhHHHHHHHhhhhccccc
Confidence 2233333444444444444444444
No 11
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.35 E-value=2.9e-13 Score=138.26 Aligned_cols=197 Identities=20% Similarity=0.266 Sum_probs=162.5
Q ss_pred ceeecHHHHHHHHHHHccCcEEEcCccchhhhhhhhhcccCceEEeccCCCCCcCCCcc--CCCCCceEEEecCCCCCCc
Q 047163 438 EAKMYDVIHVVAVSIATGEHMFNIPNAANEEKKMEEIKRKGPIAISLPHRDIQELPERL--QCPNLQLFLFFGKGYGPMQ 515 (658)
Q Consensus 438 ~~~~h~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~ 515 (658)
..+--+|.|..+.++.+++ ...+. .++.+.++.|.+..+|... .-.+++.|++++|. +..
T Consensus 126 hl~~L~L~~N~I~sv~se~--------------L~~l~--alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~--It~ 187 (873)
T KOG4194|consen 126 HLEKLDLRHNLISSVTSEE--------------LSALP--ALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNR--ITT 187 (873)
T ss_pred ceeEEeeeccccccccHHH--------------HHhHh--hhhhhhhhhchhhcccCCCCCCCCCceEEeecccc--ccc
Confidence 3555566666665555544 11111 5788889999998887654 55789999999997 444
Q ss_pred cchHHhcCCCCCcEEEccCCCCCCCccc-cccCCCcceEEccCCCCCCc--hhhhccCCCcEEEccCccCCccch-hhcC
Q 047163 516 ISDLFFEGTKELKDLSLTRIPFSSLPSS-LGSLINLGTLCLEDCPRNDI--AILRQLKKLEILRLRHSYTERLPL-EIGQ 591 (658)
Q Consensus 516 ~~~~~~~~~~~L~~L~l~~~~~~~lp~~-i~~l~~L~~L~L~~~~~~~l--~~~~~l~~L~~L~l~~~~~~~lp~-~~~~ 591 (658)
+..+.|..+.+|-+|.|+.|+++.+|.. |.+|++|+.|+|..|.+... ..|..|++|+.|.|..|.+..+-. .|..
T Consensus 188 l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~ 267 (873)
T KOG4194|consen 188 LETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYG 267 (873)
T ss_pred cccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceee
Confidence 5566689999999999999999999865 55599999999999998766 789999999999999999999964 4678
Q ss_pred CCCCcEEcccCcccccccChhhhcCCCCCcEEEcccCCCCcccccCCCccchhhcCCCCccccCCCC
Q 047163 592 LTRLRLLDLSNCWRLKVIAPNVISKLSRLEELYMGNSFPKWDKVEGGSNASLAELKGLSKLDTGHNR 658 (658)
Q Consensus 592 l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~N~ 658 (658)
|.++++|+|..| ++..+-.+.+-+|++|+.|+++.| .+....+.+..-+++|+.|++++|+
T Consensus 268 l~kme~l~L~~N-~l~~vn~g~lfgLt~L~~L~lS~N-----aI~rih~d~WsftqkL~~LdLs~N~ 328 (873)
T KOG4194|consen 268 LEKMEHLNLETN-RLQAVNEGWLFGLTSLEQLDLSYN-----AIQRIHIDSWSFTQKLKELDLSSNR 328 (873)
T ss_pred ecccceeecccc-hhhhhhcccccccchhhhhccchh-----hhheeecchhhhcccceeEeccccc
Confidence 999999999999 899998888899999999999984 4777788899999999999999985
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.14 E-value=1.4e-12 Score=127.77 Aligned_cols=166 Identities=26% Similarity=0.293 Sum_probs=124.7
Q ss_pred eEEeccCCCCCcCCCcc-CCCCCceEEEecCCCCCCccchHHhcCCCCCcEEEccCCCCCCCccccccCCCcceEEccCC
Q 047163 480 IAISLPHRDIQELPERL-QCPNLQLFLFFGKGYGPMQISDLFFEGTKELKDLSLTRIPFSSLPSSLGSLINLGTLCLEDC 558 (658)
Q Consensus 480 ~~l~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~ 558 (658)
..+.-.+|.+..+|+.. .+.++..+.+.+|. ...+|+.... ++.|+.||...|-+..+|+.++.+..|.-|+|..|
T Consensus 140 ~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~--l~~l~~~~i~-m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~N 216 (565)
T KOG0472|consen 140 EDLDATNNQISSLPEDMVNLSKLSKLDLEGNK--LKALPENHIA-MKRLKHLDCNSNLLETLPPELGGLESLELLYLRRN 216 (565)
T ss_pred hhhhccccccccCchHHHHHHHHHHhhccccc--hhhCCHHHHH-HHHHHhcccchhhhhcCChhhcchhhhHHHHhhhc
Confidence 33444556666666654 66677777777774 4556666544 78888888888888888888888888888888888
Q ss_pred CCCCchhhhccCCCcEEEccCccCCccchhhc-CCCCCcEEcccCcccccccChhhhcCCCCCcEEEcccCCCCcccccC
Q 047163 559 PRNDIAILRQLKKLEILRLRHSYTERLPLEIG-QLTRLRLLDLSNCWRLKVIAPNVISKLSRLEELYMGNSFPKWDKVEG 637 (658)
Q Consensus 559 ~~~~l~~~~~l~~L~~L~l~~~~~~~lp~~~~-~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~ 637 (658)
++..+|.|+.+..|..|.+..|.++.+|..++ +|.+|..|++.+| .++++|.+ +..+.+|..|++++|. ++
T Consensus 217 ki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdN-klke~Pde-~clLrsL~rLDlSNN~-----is- 288 (565)
T KOG0472|consen 217 KIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDN-KLKEVPDE-ICLLRSLERLDLSNND-----IS- 288 (565)
T ss_pred ccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeecccc-ccccCchH-HHHhhhhhhhcccCCc-----cc-
Confidence 88888888888888888888888888886665 7888888888888 78888877 7778888888888743 44
Q ss_pred CCccchhhcCCCCccccCCC
Q 047163 638 GSNASLAELKGLSKLDTGHN 657 (658)
Q Consensus 638 ~~~~~l~~l~~L~~L~l~~N 657 (658)
..|.+++++ .|+.|-+.+|
T Consensus 289 ~Lp~sLgnl-hL~~L~leGN 307 (565)
T KOG0472|consen 289 SLPYSLGNL-HLKFLALEGN 307 (565)
T ss_pred cCCcccccc-eeeehhhcCC
Confidence 567778888 7887777776
No 13
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.12 E-value=1e-11 Score=133.94 Aligned_cols=170 Identities=22% Similarity=0.262 Sum_probs=126.1
Q ss_pred CceEEeccCCCCCcCCCccC-CCCCceEEEecCCCCCCccchHHhcC-------------------------CCCCcEEE
Q 047163 478 GPIAISLPHRDIQELPERLQ-CPNLQLFLFFGKGYGPMQISDLFFEG-------------------------TKELKDLS 531 (658)
Q Consensus 478 ~~~~l~l~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~~-------------------------~~~L~~L~ 531 (658)
.++.+++..|.+..+|+... +++|++|++..|. ...+|+.++.. ++.|+.|+
T Consensus 288 ~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~--L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~Ly 365 (1081)
T KOG0618|consen 288 SLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNN--LPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELY 365 (1081)
T ss_pred hHHHHHhhhhhhhhCCCcccccceeeeeeehhcc--ccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHH
Confidence 45666667777777777663 7778888887774 44455544332 23455556
Q ss_pred ccCCCCC-CCccccccCCCcceEEccCCCCCCc--hhhhccCCCcEEEccCccCCccchhhcCCCCCcEEcccCcccccc
Q 047163 532 LTRIPFS-SLPSSLGSLINLGTLCLEDCPRNDI--AILRQLKKLEILRLRHSYTERLPLEIGQLTRLRLLDLSNCWRLKV 608 (658)
Q Consensus 532 l~~~~~~-~lp~~i~~l~~L~~L~L~~~~~~~l--~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~ 608 (658)
+.+|.++ ..-+.+-+++||+.|+|++|.+..+ ..+.++..|+.|+|+||.++.+|..+.++..|++|..++| .+..
T Consensus 366 lanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN-~l~~ 444 (1081)
T KOG0618|consen 366 LANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSN-QLLS 444 (1081)
T ss_pred HhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCC-ceee
Confidence 6666665 2223456788999999999998877 6888999999999999999999999999999999999999 8888
Q ss_pred cChhhhcCCCCCcEEEcccCCCCcccccC-CCccchhhcCCCCccccCCCC
Q 047163 609 IAPNVISKLSRLEELYMGNSFPKWDKVEG-GSNASLAELKGLSKLDTGHNR 658 (658)
Q Consensus 609 ~~~~~i~~l~~L~~L~l~~~~~~~~~~~~-~~~~~l~~l~~L~~L~l~~N~ 658 (658)
+| + +..++.|+.+|++.|. ++- .+|..... ++|++|++++|.
T Consensus 445 fP-e-~~~l~qL~~lDlS~N~-----L~~~~l~~~~p~-p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 445 FP-E-LAQLPQLKVLDLSCNN-----LSEVTLPEALPS-PNLKYLDLSGNT 487 (1081)
T ss_pred ch-h-hhhcCcceEEecccch-----hhhhhhhhhCCC-cccceeeccCCc
Confidence 88 4 8899999999999854 432 22322211 799999999983
No 14
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.11 E-value=3.9e-10 Score=134.57 Aligned_cols=122 Identities=25% Similarity=0.349 Sum_probs=67.5
Q ss_pred CceEEeccCCCCCcCCCccCCCCCceEEEecCCCCCCccchHHhcCCCCCcEEEccCCC-CCCCccccccCCCcceEEcc
Q 047163 478 GPIAISLPHRDIQELPERLQCPNLQLFLFFGKGYGPMQISDLFFEGTKELKDLSLTRIP-FSSLPSSLGSLINLGTLCLE 556 (658)
Q Consensus 478 ~~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~lp~~i~~l~~L~~L~L~ 556 (658)
+++.+.+..+.+..+|......+|+.|.+.++. ...++.+ +..+++|+.|+|+++. +..+| .++.+++|++|+|+
T Consensus 590 ~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~--l~~L~~~-~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~ 665 (1153)
T PLN03210 590 KLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSK--LEKLWDG-VHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLS 665 (1153)
T ss_pred ccEEEEecCCCCCCCCCcCCccCCcEEECcCcc--ccccccc-cccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEec
Confidence 466666666666666666666667777666654 2333333 2455666666666543 33444 35555666666666
Q ss_pred CCC-CCCc-hhhhccCCCcEEEccCc-cCCccchhhcCCCCCcEEcccCcc
Q 047163 557 DCP-RNDI-AILRQLKKLEILRLRHS-YTERLPLEIGQLTRLRLLDLSNCW 604 (658)
Q Consensus 557 ~~~-~~~l-~~~~~l~~L~~L~l~~~-~~~~lp~~~~~l~~L~~L~l~~~~ 604 (658)
+|. +..+ ..++++++|+.|++++| .+..+|..+ ++++|++|++++|.
T Consensus 666 ~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~ 715 (1153)
T PLN03210 666 DCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCS 715 (1153)
T ss_pred CCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCC
Confidence 553 3333 45555566666666554 455555443 45555555555543
No 15
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.08 E-value=2.8e-12 Score=125.64 Aligned_cols=170 Identities=19% Similarity=0.279 Sum_probs=129.0
Q ss_pred CceEEeccCCCCCcCCCcc-CCCCCceEEEecCCCCCCccchHHhcCCCCCcEEEccCCCCCCCccccccCCCcceEEcc
Q 047163 478 GPIAISLPHRDIQELPERL-QCPNLQLFLFFGKGYGPMQISDLFFEGTKELKDLSLTRIPFSSLPSSLGSLINLGTLCLE 556 (658)
Q Consensus 478 ~~~~l~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~L~ 556 (658)
+.+++.++.|....+++.+ .+..+..+...+|. ...+|+++ ..+..|..|++.+|.+..+|+..-.++.|+.|+..
T Consensus 115 ~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~--i~slp~~~-~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~ 191 (565)
T KOG0472|consen 115 SLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQ--ISSLPEDM-VNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCN 191 (565)
T ss_pred hhhhhhccccceeecCchHHHHhhhhhhhccccc--cccCchHH-HHHHHHHHhhccccchhhCCHHHHHHHHHHhcccc
Confidence 4556666666666666554 56666666666664 45566653 45667777778888887777666667778888887
Q ss_pred CCCCCCc-hhhhccCCCcEEEccCccCCccchhhcCCCCCcEEcccCcccccccChhhhcCCCCCcEEEcccCCCCcccc
Q 047163 557 DCPRNDI-AILRQLKKLEILRLRHSYTERLPLEIGQLTRLRLLDLSNCWRLKVIAPNVISKLSRLEELYMGNSFPKWDKV 635 (658)
Q Consensus 557 ~~~~~~l-~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~~~~~~ 635 (658)
.|-++.+ +.++.+.+|..|+++.|.+..+| .|+.+..|..|++..| .++.+|.+...++++|.+|++.+| ++
T Consensus 192 ~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lP-ef~gcs~L~Elh~g~N-~i~~lpae~~~~L~~l~vLDLRdN-----kl 264 (565)
T KOG0472|consen 192 SNLLETLPPELGGLESLELLYLRRNKIRFLP-EFPGCSLLKELHVGEN-QIEMLPAEHLKHLNSLLVLDLRDN-----KL 264 (565)
T ss_pred hhhhhcCChhhcchhhhHHHHhhhcccccCC-CCCccHHHHHHHhccc-HHHhhHHHHhcccccceeeecccc-----cc
Confidence 7777777 78888888888888888888888 4788888888888888 788888886669999999999984 45
Q ss_pred cCCCccchhhcCCCCccccCCCC
Q 047163 636 EGGSNASLAELKGLSKLDTGHNR 658 (658)
Q Consensus 636 ~~~~~~~l~~l~~L~~L~l~~N~ 658 (658)
+ +.|..+.-|++|..||+++|.
T Consensus 265 k-e~Pde~clLrsL~rLDlSNN~ 286 (565)
T KOG0472|consen 265 K-EVPDEICLLRSLERLDLSNND 286 (565)
T ss_pred c-cCchHHHHhhhhhhhcccCCc
Confidence 4 889999999999999999983
No 16
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.06 E-value=1.1e-10 Score=106.20 Aligned_cols=138 Identities=23% Similarity=0.219 Sum_probs=41.3
Q ss_pred cCCCCCcCCCccCCCCCceEEEecCCCCCCccchHHhcCCCCCcEEEccCCCCCCCccccccCCCcceEEccCCCCCCc-
Q 047163 485 PHRDIQELPERLQCPNLQLFLFFGKGYGPMQISDLFFEGTKELKDLSLTRIPFSSLPSSLGSLINLGTLCLEDCPRNDI- 563 (658)
Q Consensus 485 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~l- 563 (658)
..+.+...+....+.+++.|.+.+|.+. .+.. .-..+.+|++|++++|.+..++ .+..+++|+.|++++|.++.+
T Consensus 5 t~~~i~~~~~~~n~~~~~~L~L~~n~I~--~Ie~-L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~ 80 (175)
T PF14580_consen 5 TANMIEQIAQYNNPVKLRELNLRGNQIS--TIEN-LGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSIS 80 (175)
T ss_dssp ---------------------------------S---TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-C
T ss_pred cccccccccccccccccccccccccccc--cccc-hhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccc
Confidence 3444555555555566777777777532 2221 1124566777777777777664 455677777777777777766
Q ss_pred hhh-hccCCCcEEEccCccCCccc--hhhcCCCCCcEEcccCcccccccC---hhhhcCCCCCcEEEccc
Q 047163 564 AIL-RQLKKLEILRLRHSYTERLP--LEIGQLTRLRLLDLSNCWRLKVIA---PNVISKLSRLEELYMGN 627 (658)
Q Consensus 564 ~~~-~~l~~L~~L~l~~~~~~~lp--~~~~~l~~L~~L~l~~~~~l~~~~---~~~i~~l~~L~~L~l~~ 627 (658)
+.+ ..+++|+.|++++|.+..+. ..+..+++|+.|++.+| .+...+ ...+..+|+|+.||-..
T Consensus 81 ~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~N-Pv~~~~~YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 81 EGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGN-PVCEKKNYRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp HHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT--GGGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred cchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCC-cccchhhHHHHHHHHcChhheeCCEE
Confidence 344 34677777777777665553 34556677777777777 333322 22355667777776543
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.06 E-value=3.6e-10 Score=126.26 Aligned_cols=157 Identities=17% Similarity=0.204 Sum_probs=83.4
Q ss_pred CceEEeccCCCCCcCCCccCCCCCceEEEecCCCCCCccchHHhcCCCCCcEEEccCCCCCCCccccccCCCcceEEccC
Q 047163 478 GPIAISLPHRDIQELPERLQCPNLQLFLFFGKGYGPMQISDLFFEGTKELKDLSLTRIPFSSLPSSLGSLINLGTLCLED 557 (658)
Q Consensus 478 ~~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~L~~ 557 (658)
+++.|.+.+|.+..+|... .++|+.|.+++|. ...+|..+. .+|+.|++++|.+..+|..+. .+|++|++++
T Consensus 221 nL~~L~Ls~N~LtsLP~~l-~~~L~~L~Ls~N~--L~~LP~~l~---s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~ 292 (754)
T PRK15370 221 NIKTLYANSNQLTSIPATL-PDTIQEMELSINR--ITELPERLP---SALQSLDLFHNKISCLPENLP--EELRYLSVYD 292 (754)
T ss_pred CCCEEECCCCccccCChhh-hccccEEECcCCc--cCcCChhHh---CCCCEEECcCCccCccccccC--CCCcEEECCC
Confidence 3444444444444443322 1244444444443 223333321 245555555555555554432 3555555555
Q ss_pred CCCCCch-hhhccCCCcEEEccCccCCccchhhcCCCCCcEEcccCcccccccChhhhcCCCCCcEEEcccCCCCccccc
Q 047163 558 CPRNDIA-ILRQLKKLEILRLRHSYTERLPLEIGQLTRLRLLDLSNCWRLKVIAPNVISKLSRLEELYMGNSFPKWDKVE 636 (658)
Q Consensus 558 ~~~~~l~-~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~ 636 (658)
|++..++ .+. .+|+.|++++|.+..+|..+. ++|+.|++++| .++.+|.. + .++|+.|++++|. ++
T Consensus 293 N~Lt~LP~~lp--~sL~~L~Ls~N~Lt~LP~~l~--~sL~~L~Ls~N-~Lt~LP~~-l--~~sL~~L~Ls~N~-----L~ 359 (754)
T PRK15370 293 NSIRTLPAHLP--SGITHLNVQSNSLTALPETLP--PGLKTLEAGEN-ALTSLPAS-L--PPELQVLDVSKNQ-----IT 359 (754)
T ss_pred CccccCcccch--hhHHHHHhcCCccccCCcccc--ccceeccccCC-ccccCChh-h--cCcccEEECCCCC-----CC
Confidence 5554442 111 245555555555555554332 57777778777 67777654 3 2678888888753 44
Q ss_pred CCCccchhhcCCCCccccCCCC
Q 047163 637 GGSNASLAELKGLSKLDTGHNR 658 (658)
Q Consensus 637 ~~~~~~l~~l~~L~~L~l~~N~ 658 (658)
.+|..+ .++|+.|++++|+
T Consensus 360 -~LP~~l--p~~L~~LdLs~N~ 378 (754)
T PRK15370 360 -VLPETL--PPTITTLDVSRNA 378 (754)
T ss_pred -cCChhh--cCCcCEEECCCCc
Confidence 345544 3688889988884
No 18
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.04 E-value=2.5e-08 Score=117.90 Aligned_cols=269 Identities=10% Similarity=0.103 Sum_probs=159.0
Q ss_pred cccccccccchHHHHHHHHHHhccCCccEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCC-CCHHHHHHHHH
Q 047163 150 QVKDFEAFDSKMEVFQDVMEALKDDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQN-PDHHKIQDKLA 228 (658)
Q Consensus 150 ~~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~-~~~~~~~~~i~ 228 (658)
+|.....++-|+..++.+-+ ....+++.|+|++|.||||++..+... ++.++|+++... .+...+...++
T Consensus 9 ~p~~~~~~~~R~rl~~~l~~---~~~~~~~~v~apaG~GKTtl~~~~~~~------~~~~~w~~l~~~d~~~~~f~~~l~ 79 (903)
T PRK04841 9 RPVRLHNTVVRERLLAKLSG---ANNYRLVLVTSPAGYGKTTLISQWAAG------KNNLGWYSLDESDNQPERFASYLI 79 (903)
T ss_pred CCCCccccCcchHHHHHHhc---ccCCCeEEEECCCCCCHHHHHHHHHHh------CCCeEEEecCcccCCHHHHHHHHH
Confidence 33445567888877765543 245789999999999999999998842 236889999744 45566666666
Q ss_pred HhcCCCCC-------------CCCCHHHHHHHHHHHHhc-CCeEEEEEecCCcccC------cccccCcccCCCc-----
Q 047163 229 FGLGMEFG-------------FNENMFQRASRLCERLKK-EKRLLIILDNIWIELE------FDKIGIPSGNVEK----- 283 (658)
Q Consensus 229 ~~l~~~~~-------------~~~~~~~~~~~l~~~l~~-~k~~LlVlDdv~~~~~------~~~l~~~~~~~~~----- 283 (658)
..+..... ...........+...+.. +.+++|||||+...++ +..+....+....
T Consensus 80 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~s 159 (903)
T PRK04841 80 AALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLS 159 (903)
T ss_pred HHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEe
Confidence 55531110 001222233344444432 5789999999965421 1111100111000
Q ss_pred --------------c-----c----cccchhhHHhhhccC---CccHHHHHHHHHcCCchhHHHHHHHHhccCChHHHHH
Q 047163 284 --------------E-----R----TDARSRCTIILTKTS---TIQPIADEIVEICGGLPVAVTTVANALKSKSLDIWKD 337 (658)
Q Consensus 284 --------------~-----~----~~~~~~~~~Lf~~~~---~~~~~~~~i~~~c~glPLai~~~g~~L~~~~~~~w~~ 337 (658)
+ + .....++..+|.... -..+...+|.+.|+|.|+++..++..++..+.. ...
T Consensus 160 R~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~~~~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~-~~~ 238 (903)
T PRK04841 160 RNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSPIEAAESSRLCDDVEGWATALQLIALSARQNNSS-LHD 238 (903)
T ss_pred CCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCCCCHHHHHHHHHHhCChHHHHHHHHHHHhhCCCc-hhh
Confidence 0 0 112233666776543 345677899999999999999988776544210 011
Q ss_pred HHHHHhcCCCCCCCchhHHHHHHHHh-hHhcCCchhHHHHHHHhcccccCCcccHHHHHHHHhhhcccccccCHHHHHHH
Q 047163 338 ALNQLRSSNPREIDGMDKKVYTSIEL-SYNLLASKEAKSLFRLCGLYNEGHAIQVASILRYGMGWGLLENVYTLEEARSR 416 (658)
Q Consensus 338 ~l~~l~~~~~~~~~~~~~~i~~~l~~-sy~~L~~~~~k~~fl~~~~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~ 416 (658)
....+.. .....+...+.- .++.||+. .+.+++..|+++ . ++.+.+-.. .+ .++
T Consensus 239 ~~~~~~~-------~~~~~~~~~l~~~v~~~l~~~-~~~~l~~~a~~~-~--~~~~l~~~l------~~----~~~---- 293 (903)
T PRK04841 239 SARRLAG-------INASHLSDYLVEEVLDNVDLE-TRHFLLRCSVLR-S--MNDALIVRV------TG----EEN---- 293 (903)
T ss_pred hhHhhcC-------CCchhHHHHHHHHHHhcCCHH-HHHHHHHhcccc-c--CCHHHHHHH------cC----CCc----
Confidence 1111100 001234454433 37899998 999999999987 2 454433221 11 111
Q ss_pred HHHHHHHHHHcccccc-C-CCCCceeecHHHHHHHHHHH
Q 047163 417 VHRLIDNLKSSCLLLD-G-DAKDEAKMYDVIHVVAVSIA 453 (658)
Q Consensus 417 ~~~~~~~L~~~~ll~~-~-~~~~~~~~h~lv~~~~~~~~ 453 (658)
....+++|...+++.. . +....|+.|++++++++...
T Consensus 294 ~~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 294 GQMRLEELERQGLFIQRMDDSGEWFRYHPLFASFLRHRC 332 (903)
T ss_pred HHHHHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHH
Confidence 2346888888888653 2 23457999999999998775
No 19
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.02 E-value=7.2e-10 Score=123.84 Aligned_cols=158 Identities=20% Similarity=0.279 Sum_probs=114.7
Q ss_pred CceEEeccCCCCCcCCCccCCCCCceEEEecCCCCCCccchHHhcCCCCCcEEEccCCCCCCCccccccCCCcceEEccC
Q 047163 478 GPIAISLPHRDIQELPERLQCPNLQLFLFFGKGYGPMQISDLFFEGTKELKDLSLTRIPFSSLPSSLGSLINLGTLCLED 557 (658)
Q Consensus 478 ~~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~L~~ 557 (658)
.++.+.+++|.+..+|... .++|+.|++++|.. ..+|..+ .++|++|++++|.+..+|..+. .+|+.|++++
T Consensus 242 ~L~~L~Ls~N~L~~LP~~l-~s~L~~L~Ls~N~L--~~LP~~l---~~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~ 313 (754)
T PRK15370 242 TIQEMELSINRITELPERL-PSALQSLDLFHNKI--SCLPENL---PEELRYLSVYDNSIRTLPAHLP--SGITHLNVQS 313 (754)
T ss_pred cccEEECcCCccCcCChhH-hCCCCEEECcCCcc--Ccccccc---CCCCcEEECCCCccccCcccch--hhHHHHHhcC
Confidence 6788888888888777654 35788888888863 3466543 2478888999988888876553 4788888888
Q ss_pred CCCCCchhhhccCCCcEEEccCccCCccchhhcCCCCCcEEcccCcccccccChhhhcCCCCCcEEEcccCCCCcccccC
Q 047163 558 CPRNDIAILRQLKKLEILRLRHSYTERLPLEIGQLTRLRLLDLSNCWRLKVIAPNVISKLSRLEELYMGNSFPKWDKVEG 637 (658)
Q Consensus 558 ~~~~~l~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~ 637 (658)
|.+..++.. ..++|++|++++|.+..+|..+. ++|+.|++++| .++.+|.. + .++|+.|++++|. ++
T Consensus 314 N~Lt~LP~~-l~~sL~~L~Ls~N~Lt~LP~~l~--~sL~~L~Ls~N-~L~~LP~~-l--p~~L~~LdLs~N~-----Lt- 380 (754)
T PRK15370 314 NSLTALPET-LPPGLKTLEAGENALTSLPASLP--PELQVLDVSKN-QITVLPET-L--PPTITTLDVSRNA-----LT- 380 (754)
T ss_pred CccccCCcc-ccccceeccccCCccccCChhhc--CcccEEECCCC-CCCcCChh-h--cCCcCEEECCCCc-----CC-
Confidence 888776321 12678888888888888887664 68889999988 78877764 3 3688889988854 44
Q ss_pred CCccchhhcCCCCccccCCCC
Q 047163 638 GSNASLAELKGLSKLDTGHNR 658 (658)
Q Consensus 638 ~~~~~l~~l~~L~~L~l~~N~ 658 (658)
.+|..+. .+|+.|++++|+
T Consensus 381 ~LP~~l~--~sL~~LdLs~N~ 399 (754)
T PRK15370 381 NLPENLP--AALQIMQASRNN 399 (754)
T ss_pred CCCHhHH--HHHHHHhhccCC
Confidence 4455443 357788888774
No 20
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.00 E-value=1.4e-11 Score=126.12 Aligned_cols=164 Identities=22% Similarity=0.301 Sum_probs=102.5
Q ss_pred EEeccCCCCCcCCCcc-CCCCCceEEEecCCCCCCccchHHhcCCCCCcEEEccCCCCCCCccccccCCCcceEEccCCC
Q 047163 481 AISLPHRDIQELPERL-QCPNLQLFLFFGKGYGPMQISDLFFEGTKELKDLSLTRIPFSSLPSSLGSLINLGTLCLEDCP 559 (658)
Q Consensus 481 ~l~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~ 559 (658)
...++.|.+..+|... .+-.|..+.++.|. ...+|.. ..++..|.+|+|+.|.+..+|..++.|+ |+.|-+++|+
T Consensus 79 ~aDlsrNR~~elp~~~~~f~~Le~liLy~n~--~r~ip~~-i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNk 154 (722)
T KOG0532|consen 79 FADLSRNRFSELPEEACAFVSLESLILYHNC--IRTIPEA-ICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNK 154 (722)
T ss_pred hhhccccccccCchHHHHHHHHHHHHHHhcc--ceecchh-hhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCc
Confidence 3445556666665544 45556666666654 3334444 3556666677777777776666666655 6666777766
Q ss_pred CCCc-hhhhccCCCcEEEccCccCCccchhhcCCCCCcEEcccCcccccccChhhhcCCCCCcEEEcccCCCCcccccCC
Q 047163 560 RNDI-AILRQLKKLEILRLRHSYTERLPLEIGQLTRLRLLDLSNCWRLKVIAPNVISKLSRLEELYMGNSFPKWDKVEGG 638 (658)
Q Consensus 560 ~~~l-~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~ 638 (658)
+..+ +.++.+..|..|+.+.|.+.++|..++++.+|+.|.+..| .+..+|++ ++.| .|..|++++ |++. .
T Consensus 155 l~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn-~l~~lp~E-l~~L-pLi~lDfSc-----Nkis-~ 225 (722)
T KOG0532|consen 155 LTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRN-HLEDLPEE-LCSL-PLIRLDFSC-----NKIS-Y 225 (722)
T ss_pred cccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhh-hhhhCCHH-HhCC-ceeeeeccc-----Ccee-e
Confidence 6666 5666666666777777777777766777777777777666 66666666 4433 366666665 3343 5
Q ss_pred CccchhhcCCCCccccCCC
Q 047163 639 SNASLAELKGLSKLDTGHN 657 (658)
Q Consensus 639 ~~~~l~~l~~L~~L~l~~N 657 (658)
+|..|.+|+.|++|.|.+|
T Consensus 226 iPv~fr~m~~Lq~l~LenN 244 (722)
T KOG0532|consen 226 LPVDFRKMRHLQVLQLENN 244 (722)
T ss_pred cchhhhhhhhheeeeeccC
Confidence 6666777777777766665
No 21
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.99 E-value=1.1e-09 Score=121.73 Aligned_cols=154 Identities=19% Similarity=0.195 Sum_probs=95.8
Q ss_pred CceEEeccCCCCCcCCCccCCCCCceEEEecCCCCCCccchHHhcCCCCCcEEEccCCCCCCCccccccCCCcceEEccC
Q 047163 478 GPIAISLPHRDIQELPERLQCPNLQLFLFFGKGYGPMQISDLFFEGTKELKDLSLTRIPFSSLPSSLGSLINLGTLCLED 557 (658)
Q Consensus 478 ~~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~L~~ 557 (658)
.++.|.+++|.+..+|.. .++|+.|.+.+|.+ ..+|. ...+|++|+|++|.+..+|.. ..+|+.|++++
T Consensus 303 ~L~~LdLS~N~L~~Lp~l--p~~L~~L~Ls~N~L--~~LP~----lp~~Lq~LdLS~N~Ls~LP~l---p~~L~~L~Ls~ 371 (788)
T PRK15387 303 GLQELSVSDNQLASLPAL--PSELCKLWAYNNQL--TSLPT----LPSGLQELSVSDNQLASLPTL---PSELYKLWAYN 371 (788)
T ss_pred ccceeECCCCccccCCCC--cccccccccccCcc--ccccc----cccccceEecCCCccCCCCCC---Ccccceehhhc
Confidence 566666666666655542 23455566665542 22332 124677888888877777653 24566667777
Q ss_pred CCCCCchhhhccCCCcEEEccCccCCccchhhcCCCCCcEEcccCcccccccChhhhcCCCCCcEEEcccCCCCcccccC
Q 047163 558 CPRNDIAILRQLKKLEILRLRHSYTERLPLEIGQLTRLRLLDLSNCWRLKVIAPNVISKLSRLEELYMGNSFPKWDKVEG 637 (658)
Q Consensus 558 ~~~~~l~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~ 637 (658)
|.+..++.+ +.+|+.|++++|.+..+|.. .++|+.|++++| .++.+|.. ..+|+.|++++| +++
T Consensus 372 N~L~~LP~l--~~~L~~LdLs~N~Lt~LP~l---~s~L~~LdLS~N-~LssIP~l----~~~L~~L~Ls~N-----qLt- 435 (788)
T PRK15387 372 NRLTSLPAL--PSGLKELIVSGNRLTSLPVL---PSELKELMVSGN-RLTSLPML----PSGLLSLSVYRN-----QLT- 435 (788)
T ss_pred cccccCccc--ccccceEEecCCcccCCCCc---ccCCCEEEccCC-cCCCCCcc----hhhhhhhhhccC-----ccc-
Confidence 766655432 24677777777777777653 246777777777 67766542 235666777763 344
Q ss_pred CCccchhhcCCCCccccCCCC
Q 047163 638 GSNASLAELKGLSKLDTGHNR 658 (658)
Q Consensus 638 ~~~~~l~~l~~L~~L~l~~N~ 658 (658)
.+|..+.++++|+.|++++|+
T Consensus 436 ~LP~sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 436 RLPESLIHLSSETTVNLEGNP 456 (788)
T ss_pred ccChHHhhccCCCeEECCCCC
Confidence 567777788888888887774
No 22
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.95 E-value=9.8e-10 Score=100.04 Aligned_cols=127 Identities=23% Similarity=0.272 Sum_probs=37.5
Q ss_pred CCCCCcEEEccCCCCCCCccccc-cCCCcceEEccCCCCCCchhhhccCCCcEEEccCccCCccchhhc-CCCCCcEEcc
Q 047163 523 GTKELKDLSLTRIPFSSLPSSLG-SLINLGTLCLEDCPRNDIAILRQLKKLEILRLRHSYTERLPLEIG-QLTRLRLLDL 600 (658)
Q Consensus 523 ~~~~L~~L~l~~~~~~~lp~~i~-~l~~L~~L~L~~~~~~~l~~~~~l~~L~~L~l~~~~~~~lp~~~~-~l~~L~~L~l 600 (658)
+...++.|+|++|.++.+. .++ .+.+|+.|+|++|.+..++.+..+++|++|++++|.+.++++.+. .+++|++|++
T Consensus 17 n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L 95 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYL 95 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-CHHHHHH-TT--EEE-
T ss_pred ccccccccccccccccccc-chhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccccchHHhCCcCCEEEC
Confidence 3345666666666666542 343 356666666666666666666666666666666666666654442 4666666666
Q ss_pred cCcccccccCh-hhhcCCCCCcEEEcccCCCCcccccCCCccchhhcCCCCccc
Q 047163 601 SNCWRLKVIAP-NVISKLSRLEELYMGNSFPKWDKVEGGSNASLAELKGLSKLD 653 (658)
Q Consensus 601 ~~~~~l~~~~~-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 653 (658)
++| .+..+.. ..+..+++|+.|++.+|+.. +....-...+..+++|+.||
T Consensus 96 ~~N-~I~~l~~l~~L~~l~~L~~L~L~~NPv~--~~~~YR~~vi~~lP~Lk~LD 146 (175)
T PF14580_consen 96 SNN-KISDLNELEPLSSLPKLRVLSLEGNPVC--EKKNYRLFVIYKLPSLKVLD 146 (175)
T ss_dssp TTS----SCCCCGGGGG-TT--EEE-TT-GGG--GSTTHHHHHHHH-TT-SEET
T ss_pred cCC-cCCChHHhHHHHcCCCcceeeccCCccc--chhhHHHHHHHHcChhheeC
Confidence 666 4444321 12556666666666664421 00111123455666666665
No 23
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.91 E-value=1.3e-10 Score=125.47 Aligned_cols=171 Identities=26% Similarity=0.384 Sum_probs=127.5
Q ss_pred CceEEeccCCCCCcCCCcc-CCCCCceEEEecCCC---------------------CCCccchHHhcCCCCCcEEEccCC
Q 047163 478 GPIAISLPHRDIQELPERL-QCPNLQLFLFFGKGY---------------------GPMQISDLFFEGTKELKDLSLTRI 535 (658)
Q Consensus 478 ~~~~l~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~---------------------~~~~~~~~~~~~~~~L~~L~l~~~ 535 (658)
++.++.++++.+..+|... .+.+|..+....|.. ....+|+ +..+++.|++|+|..|
T Consensus 242 nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~-~le~~~sL~tLdL~~N 320 (1081)
T KOG0618|consen 242 NLQYLDISHNNLSNLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPP-FLEGLKSLRTLDLQSN 320 (1081)
T ss_pred cceeeecchhhhhcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCC-cccccceeeeeeehhc
Confidence 5667777777777777444 677777776666542 1222222 2456788889999988
Q ss_pred CCCCCccccc--------------------------cCCCcceEEccCCCCCCc--hhhhccCCCcEEEccCccCCccch
Q 047163 536 PFSSLPSSLG--------------------------SLINLGTLCLEDCPRNDI--AILRQLKKLEILRLRHSYTERLPL 587 (658)
Q Consensus 536 ~~~~lp~~i~--------------------------~l~~L~~L~L~~~~~~~l--~~~~~l~~L~~L~l~~~~~~~lp~ 587 (658)
.+..+|+.+. .+..|+.|.+.+|.+.+- +-+.++.+|+.|+|++|.+.++|.
T Consensus 321 ~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpa 400 (1081)
T KOG0618|consen 321 NLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPA 400 (1081)
T ss_pred cccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCH
Confidence 8887765332 123455566666665442 778889999999999999999994
Q ss_pred -hhcCCCCCcEEcccCcccccccChhhhcCCCCCcEEEcccCCCCcccccCCCccchhhcCCCCccccCCCC
Q 047163 588 -EIGQLTRLRLLDLSNCWRLKVIAPNVISKLSRLEELYMGNSFPKWDKVEGGSNASLAELKGLSKLDTGHNR 658 (658)
Q Consensus 588 -~~~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~N~ 658 (658)
.+.++..|++|++++| .++.+|.. +.+++.|++|...+|. +. ..| .+.+++.|+.+|++.|+
T Consensus 401 s~~~kle~LeeL~LSGN-kL~~Lp~t-va~~~~L~tL~ahsN~-----l~-~fP-e~~~l~qL~~lDlS~N~ 463 (1081)
T KOG0618|consen 401 SKLRKLEELEELNLSGN-KLTTLPDT-VANLGRLHTLRAHSNQ-----LL-SFP-ELAQLPQLKVLDLSCNN 463 (1081)
T ss_pred HHHhchHHhHHHhcccc-hhhhhhHH-HHhhhhhHHHhhcCCc-----ee-ech-hhhhcCcceEEecccch
Confidence 5789999999999999 89999965 8899999999998843 44 567 89999999999999996
No 24
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.87 E-value=1.4e-10 Score=113.75 Aligned_cols=87 Identities=21% Similarity=0.284 Sum_probs=76.1
Q ss_pred hhhccCCCcEEEccCccCCcc-chhhcCCCCCcEEcccCcccccccChhhhcCCCCCcEEEcccCCCCcccccCCCccch
Q 047163 565 ILRQLKKLEILRLRHSYTERL-PLEIGQLTRLRLLDLSNCWRLKVIAPNVISKLSRLEELYMGNSFPKWDKVEGGSNASL 643 (658)
Q Consensus 565 ~~~~l~~L~~L~l~~~~~~~l-p~~~~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l 643 (658)
.|.+|++|+.|+|++|.++.+ +.+|..+..++.|.|..| .+..+...++.++..|++|++.+ |+++...|..|
T Consensus 269 cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N-~l~~v~~~~f~~ls~L~tL~L~~-----N~it~~~~~aF 342 (498)
T KOG4237|consen 269 CFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRN-KLEFVSSGMFQGLSGLKTLSLYD-----NQITTVAPGAF 342 (498)
T ss_pred HHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcc-hHHHHHHHhhhccccceeeeecC-----CeeEEEecccc
Confidence 467889999999999988888 567889999999999999 88888888899999999999998 55887889999
Q ss_pred hhcCCCCccccCCC
Q 047163 644 AELKGLSKLDTGHN 657 (658)
Q Consensus 644 ~~l~~L~~L~l~~N 657 (658)
..+.+|..|++-.|
T Consensus 343 ~~~~~l~~l~l~~N 356 (498)
T KOG4237|consen 343 QTLFSLSTLNLLSN 356 (498)
T ss_pred cccceeeeeehccC
Confidence 99999999998877
No 25
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.86 E-value=3.6e-10 Score=106.93 Aligned_cols=125 Identities=20% Similarity=0.238 Sum_probs=74.8
Q ss_pred CCCcEEEccCCCCCCCccccccCCCcceEEccCCCCCCchhhhccCCCcEEEccCccCCccchhhcCCCCCcEEcccCcc
Q 047163 525 KELKDLSLTRIPFSSLPSSLGSLINLGTLCLEDCPRNDIAILRQLKKLEILRLRHSYTERLPLEIGQLTRLRLLDLSNCW 604 (658)
Q Consensus 525 ~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~l~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~ 604 (658)
+.|..|||++|.++.+-.+..-.+.++.|++++|.+..+.++..|++|+.|||++|.+.++-.+-.+|-|.++|.+++|
T Consensus 284 q~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N- 362 (490)
T KOG1259|consen 284 QELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQN- 362 (490)
T ss_pred hhhhhccccccchhhhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhh-
Confidence 4566666666666666666666666666666666666665566666666666666666555554455666666666666
Q ss_pred cccccChhhhcCCCCCcEEEcccCCCCcccccC-CCccchhhcCCCCccccCCC
Q 047163 605 RLKVIAPNVISKLSRLEELYMGNSFPKWDKVEG-GSNASLAELKGLSKLDTGHN 657 (658)
Q Consensus 605 ~l~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~-~~~~~l~~l~~L~~L~l~~N 657 (658)
.+.++.. +++|=+|..|++++|. +.. .....|++|++|+.|.+.+|
T Consensus 363 ~iE~LSG--L~KLYSLvnLDl~~N~-----Ie~ldeV~~IG~LPCLE~l~L~~N 409 (490)
T KOG1259|consen 363 KIETLSG--LRKLYSLVNLDLSSNQ-----IEELDEVNHIGNLPCLETLRLTGN 409 (490)
T ss_pred hHhhhhh--hHhhhhheeccccccc-----hhhHHHhcccccccHHHHHhhcCC
Confidence 4554432 5566666666666532 221 12234566666666666655
No 26
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.81 E-value=3.9e-09 Score=108.64 Aligned_cols=79 Identities=25% Similarity=0.295 Sum_probs=39.2
Q ss_pred CCCcEEEccCCCCC-----CCccccccCCCcceEEccCCCCCCc------hhhhccCCCcEEEccCccCCc-----cchh
Q 047163 525 KELKDLSLTRIPFS-----SLPSSLGSLINLGTLCLEDCPRNDI------AILRQLKKLEILRLRHSYTER-----LPLE 588 (658)
Q Consensus 525 ~~L~~L~l~~~~~~-----~lp~~i~~l~~L~~L~L~~~~~~~l------~~~~~l~~L~~L~l~~~~~~~-----lp~~ 588 (658)
++|+.|++++|.+. .++..+..+.+|+.|++++|.+..- ..+..+++|++|++++|.+.. ++..
T Consensus 137 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~ 216 (319)
T cd00116 137 PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAET 216 (319)
T ss_pred CCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHH
Confidence 55566666655554 2233344445555566555554421 223334455556655554432 2233
Q ss_pred hcCCCCCcEEcccCc
Q 047163 589 IGQLTRLRLLDLSNC 603 (658)
Q Consensus 589 ~~~l~~L~~L~l~~~ 603 (658)
+..+++|++|++++|
T Consensus 217 ~~~~~~L~~L~ls~n 231 (319)
T cd00116 217 LASLKSLEVLNLGDN 231 (319)
T ss_pred hcccCCCCEEecCCC
Confidence 445555666666555
No 27
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.78 E-value=1.1e-08 Score=113.71 Aligned_cols=146 Identities=17% Similarity=0.168 Sum_probs=111.0
Q ss_pred CceEEeccCCCCCcCCCccCCCCCceEEEecCCCCCCccchHHhcCCCCCcEEEccCCCCCCCccccccCCCcceEEccC
Q 047163 478 GPIAISLPHRDIQELPERLQCPNLQLFLFFGKGYGPMQISDLFFEGTKELKDLSLTRIPFSSLPSSLGSLINLGTLCLED 557 (658)
Q Consensus 478 ~~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~L~~ 557 (658)
.+..|.+.+|.+..+|.. .++|+.|++++|.+ ..+|.. ..+|+.|++++|.+..+|.. ..+|+.|++++
T Consensus 323 ~L~~L~Ls~N~L~~LP~l--p~~Lq~LdLS~N~L--s~LP~l----p~~L~~L~Ls~N~L~~LP~l---~~~L~~LdLs~ 391 (788)
T PRK15387 323 ELCKLWAYNNQLTSLPTL--PSGLQELSVSDNQL--ASLPTL----PSELYKLWAYNNRLTSLPAL---PSGLKELIVSG 391 (788)
T ss_pred cccccccccCcccccccc--ccccceEecCCCcc--CCCCCC----CcccceehhhccccccCccc---ccccceEEecC
Confidence 567788888888877753 25789999999863 345542 35788889999999888864 35789999999
Q ss_pred CCCCCchhhhccCCCcEEEccCccCCccchhhcCCCCCcEEcccCcccccccChhhhcCCCCCcEEEcccCCCCcccccC
Q 047163 558 CPRNDIAILRQLKKLEILRLRHSYTERLPLEIGQLTRLRLLDLSNCWRLKVIAPNVISKLSRLEELYMGNSFPKWDKVEG 637 (658)
Q Consensus 558 ~~~~~l~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~ 637 (658)
|.+..++.. .++|+.|++++|.+..+|.. ..+|+.|++++| .++.+|.. ++++++|+.|++++|. +++
T Consensus 392 N~Lt~LP~l--~s~L~~LdLS~N~LssIP~l---~~~L~~L~Ls~N-qLt~LP~s-l~~L~~L~~LdLs~N~-----Ls~ 459 (788)
T PRK15387 392 NRLTSLPVL--PSELKELMVSGNRLTSLPML---PSGLLSLSVYRN-QLTRLPES-LIHLSSETTVNLEGNP-----LSE 459 (788)
T ss_pred CcccCCCCc--ccCCCEEEccCCcCCCCCcc---hhhhhhhhhccC-cccccChH-HhhccCCCeEECCCCC-----CCc
Confidence 988877543 36899999999999888864 346788999998 78888876 8899999999999854 666
Q ss_pred CCccchhhc
Q 047163 638 GSNASLAEL 646 (658)
Q Consensus 638 ~~~~~l~~l 646 (658)
..+..+.++
T Consensus 460 ~~~~~L~~l 468 (788)
T PRK15387 460 RTLQALREI 468 (788)
T ss_pred hHHHHHHHH
Confidence 655555443
No 28
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.78 E-value=1.7e-09 Score=107.72 Aligned_cols=150 Identities=23% Similarity=0.152 Sum_probs=80.6
Q ss_pred CceEEeccCCCCCcCCC---ccCCCCCceEEEecCCCCCCccchHHhcCCCCCcEEEccCCCCCCCccc--cccCCCcce
Q 047163 478 GPIAISLPHRDIQELPE---RLQCPNLQLFLFFGKGYGPMQISDLFFEGTKELKDLSLTRIPFSSLPSS--LGSLINLGT 552 (658)
Q Consensus 478 ~~~~l~l~~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~--i~~l~~L~~ 552 (658)
+++.+++.++.+...+. ...|++++.|+++.|-+........+...+++|+.|+++.|.+...-.+ -..+.+|+.
T Consensus 122 kL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~ 201 (505)
T KOG3207|consen 122 KLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQ 201 (505)
T ss_pred hhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhhe
Confidence 56677777766655542 2267777777777765444444445566777777777777766533221 123556777
Q ss_pred EEccCCCCCCc---hhhhccCCCcEEEccCcc-CCccchhhcCCCCCcEEcccCcccccccC--hhhhcCCCCCcEEEcc
Q 047163 553 LCLEDCPRNDI---AILRQLKKLEILRLRHSY-TERLPLEIGQLTRLRLLDLSNCWRLKVIA--PNVISKLSRLEELYMG 626 (658)
Q Consensus 553 L~L~~~~~~~l---~~~~~l~~L~~L~l~~~~-~~~lp~~~~~l~~L~~L~l~~~~~l~~~~--~~~i~~l~~L~~L~l~ 626 (658)
|.|+.|.++.- ...-.+|+|..|.|.+|. +..-......++.|+.|+|++| ++..++ +. ++.|+.|..|+++
T Consensus 202 L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N-~li~~~~~~~-~~~l~~L~~Lnls 279 (505)
T KOG3207|consen 202 LVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNN-NLIDFDQGYK-VGTLPGLNQLNLS 279 (505)
T ss_pred EEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCC-cccccccccc-cccccchhhhhcc
Confidence 77777765521 333344555555555552 2111122233445555555555 444333 22 4555555555555
Q ss_pred cCC
Q 047163 627 NSF 629 (658)
Q Consensus 627 ~~~ 629 (658)
.|.
T Consensus 280 ~tg 282 (505)
T KOG3207|consen 280 STG 282 (505)
T ss_pred ccC
Confidence 543
No 29
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.78 E-value=9.5e-10 Score=108.06 Aligned_cols=121 Identities=24% Similarity=0.290 Sum_probs=71.9
Q ss_pred CceEEeccCCCCCcCCCcc--CCCCCceEEEecCCCCCCccchHHhcCCCCCcEEEccC-CCCCCCccc-cccCCCcceE
Q 047163 478 GPIAISLPHRDIQELPERL--QCPNLQLFLFFGKGYGPMQISDLFFEGTKELKDLSLTR-IPFSSLPSS-LGSLINLGTL 553 (658)
Q Consensus 478 ~~~~l~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~lp~~-i~~l~~L~~L 553 (658)
....|.+..|.|..+|+.. .+++||.|+++.|. +..|.+..|.+++.|..|-+.+ |.++.+|+. |+.|..|+-|
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~--Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrL 145 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNN--ISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRL 145 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccc--hhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHH
Confidence 5566777777787777654 67788888888775 5556666677777766665555 677777643 4555555555
Q ss_pred EccCCCCCCc--hhhhccCCCcEEEccCccCCccch-hhcCCCCCcEEcc
Q 047163 554 CLEDCPRNDI--AILRQLKKLEILRLRHSYTERLPL-EIGQLTRLRLLDL 600 (658)
Q Consensus 554 ~L~~~~~~~l--~~~~~l~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l 600 (658)
.+.-|.+..+ ..+..|++|..|.+..|.+..++. .+..+.+++++++
T Consensus 146 llNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhl 195 (498)
T KOG4237|consen 146 LLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHL 195 (498)
T ss_pred hcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhh
Confidence 5555554444 444455555555554444444443 3334444444433
No 30
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.77 E-value=1e-09 Score=103.88 Aligned_cols=128 Identities=22% Similarity=0.202 Sum_probs=97.6
Q ss_pred CceEEeccCCCCCcCCCcc-CCCCCceEEEecCCCCCCccchHHhcCCCCCcEEEccCCCCCCCccccccCCCcceEEcc
Q 047163 478 GPIAISLPHRDIQELPERL-QCPNLQLFLFFGKGYGPMQISDLFFEGTKELKDLSLTRIPFSSLPSSLGSLINLGTLCLE 556 (658)
Q Consensus 478 ~~~~l~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~L~ 556 (658)
-+..+.+++|.+..+.... -.|++|.|+++.|+ ...+.. +..+.+|..|||++|.+.++-.+-..+-|++.|.|.
T Consensus 285 ~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~--i~~v~n--La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La 360 (490)
T KOG1259|consen 285 ELTELDLSGNLITQIDESVKLAPKLRRLILSQNR--IRTVQN--LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLA 360 (490)
T ss_pred hhhhccccccchhhhhhhhhhccceeEEeccccc--eeeehh--hhhcccceEeecccchhHhhhhhHhhhcCEeeeehh
Confidence 5667778888887776665 56888888888886 333333 566788888888888887665555566788888888
Q ss_pred CCCCCCchhhhccCCCcEEEccCccCCccc--hhhcCCCCCcEEcccCcccccccC
Q 047163 557 DCPRNDIAILRQLKKLEILRLRHSYTERLP--LEIGQLTRLRLLDLSNCWRLKVIA 610 (658)
Q Consensus 557 ~~~~~~l~~~~~l~~L~~L~l~~~~~~~lp--~~~~~l~~L~~L~l~~~~~l~~~~ 610 (658)
+|.++.+..+++|.+|.+||+++|+|..+. .+||+|++|++|.+.+| .+..++
T Consensus 361 ~N~iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~N-Pl~~~v 415 (490)
T KOG1259|consen 361 QNKIETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGN-PLAGSV 415 (490)
T ss_pred hhhHhhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCC-Cccccc
Confidence 888888888888888888888888887774 56888888888888888 566555
No 31
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.76 E-value=1.1e-08 Score=105.25 Aligned_cols=172 Identities=23% Similarity=0.251 Sum_probs=115.4
Q ss_pred CceEEeccCCCCCcCC-------C-ccCCCCCceEEEecCCCCCCccchHHhcCC---CCCcEEEccCCCCCC-----Cc
Q 047163 478 GPIAISLPHRDIQELP-------E-RLQCPNLQLFLFFGKGYGPMQISDLFFEGT---KELKDLSLTRIPFSS-----LP 541 (658)
Q Consensus 478 ~~~~l~l~~~~~~~~~-------~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~---~~L~~L~l~~~~~~~-----lp 541 (658)
.++++.+..+.+...+ . ...+++|+.|.+++|.... .....+..+ ++|++|++++|.+.. +.
T Consensus 52 ~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~--~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~ 129 (319)
T cd00116 52 SLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGP--DGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLA 129 (319)
T ss_pred CceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCCh--hHHHHHHHHhccCcccEEEeeCCccchHHHHHHH
Confidence 4677777766554211 1 1257899999999987432 222223333 459999999999872 34
Q ss_pred cccccC-CCcceEEccCCCCCC-----c-hhhhccCCCcEEEccCccCC-----ccchhhcCCCCCcEEcccCccccccc
Q 047163 542 SSLGSL-INLGTLCLEDCPRND-----I-AILRQLKKLEILRLRHSYTE-----RLPLEIGQLTRLRLLDLSNCWRLKVI 609 (658)
Q Consensus 542 ~~i~~l-~~L~~L~L~~~~~~~-----l-~~~~~l~~L~~L~l~~~~~~-----~lp~~~~~l~~L~~L~l~~~~~l~~~ 609 (658)
..+..+ ++|+.|++++|.+.. + ..+..+.+|++|++++|.+. .++..+..+++|++|++++| .++..
T Consensus 130 ~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n-~i~~~ 208 (319)
T cd00116 130 KGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNN-GLTDE 208 (319)
T ss_pred HHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCC-ccChH
Confidence 456667 899999999999873 2 45667789999999999776 34556667789999999999 66533
Q ss_pred Ch----hhhcCCCCCcEEEcccCCCCcccccCCCccchhh-----cCCCCccccCCC
Q 047163 610 AP----NVISKLSRLEELYMGNSFPKWDKVEGGSNASLAE-----LKGLSKLDTGHN 657 (658)
Q Consensus 610 ~~----~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~-----l~~L~~L~l~~N 657 (658)
.. ..+..+++|++|++++|. +++.....+.. .+.|++|++++|
T Consensus 209 ~~~~l~~~~~~~~~L~~L~ls~n~-----l~~~~~~~l~~~~~~~~~~L~~L~l~~n 260 (319)
T cd00116 209 GASALAETLASLKSLEVLNLGDNN-----LTDAGAAALASALLSPNISLLTLSLSCN 260 (319)
T ss_pred HHHHHHHHhcccCCCCEEecCCCc-----CchHHHHHHHHHHhccCCCceEEEccCC
Confidence 21 235678899999999865 33222222211 256666666655
No 32
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.71 E-value=1.3e-06 Score=87.56 Aligned_cols=92 Identities=22% Similarity=0.299 Sum_probs=62.1
Q ss_pred cCCccEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCCCCCHHHHHHHHH---
Q 047163 173 DDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQNPDHHKIQDKLAFGLGMEFGFNENMFQRASRLC--- 249 (658)
Q Consensus 173 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~--- 249 (658)
.....++.|+|++|+||||+++.+++...... + ...|+ +....+..+++..|+..++.+.. ..........+.
T Consensus 40 ~~~~~~~~l~G~~G~GKTtl~~~l~~~l~~~~-~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~-~~~~~~~~~~l~~~l 115 (269)
T TIGR03015 40 SQREGFILITGEVGAGKTTLIRNLLKRLDQER-V-VAAKL-VNTRVDAEDLLRMVAADFGLETE-GRDKAALLRELEDFL 115 (269)
T ss_pred hcCCCEEEEEcCCCCCHHHHHHHHHHhcCCCC-e-EEeee-eCCCCCHHHHHHHHHHHcCCCCC-CCCHHHHHHHHHHHH
Confidence 34456899999999999999999998875321 1 22233 33345777889999988877644 233333333333
Q ss_pred -HHHhcCCeEEEEEecCCcc
Q 047163 250 -ERLKKEKRLLIILDNIWIE 268 (658)
Q Consensus 250 -~~l~~~k~~LlVlDdv~~~ 268 (658)
.....++++++|+||++..
T Consensus 116 ~~~~~~~~~~vliiDe~~~l 135 (269)
T TIGR03015 116 IEQFAAGKRALLVVDEAQNL 135 (269)
T ss_pred HHHHhCCCCeEEEEECcccC
Confidence 3333578899999999875
No 33
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=98.69 E-value=2.3e-07 Score=98.43 Aligned_cols=116 Identities=22% Similarity=0.184 Sum_probs=85.7
Q ss_pred ccccccchHHHHHHHHHHhc----cCCccEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCCCCHHHHHHHHH
Q 047163 153 DFEAFDSKMEVFQDVMEALK----DDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQNPDHHKIQDKLA 228 (658)
Q Consensus 153 ~~~~~~gr~~~~~~l~~~l~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~ 228 (658)
.+..++||++++++|...+. .+....+.|+|++|+|||++++.++++.......-.++++++....+...++..|+
T Consensus 28 ~P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i~ 107 (394)
T PRK00411 28 VPENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEIA 107 (394)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHHH
Confidence 34568999999999988874 33456788999999999999999999886543233567777777778888999999
Q ss_pred HhcCCCCC--CCCCHHHHHHHHHHHHhc-CCeEEEEEecCCcc
Q 047163 229 FGLGMEFG--FNENMFQRASRLCERLKK-EKRLLIILDNIWIE 268 (658)
Q Consensus 229 ~~l~~~~~--~~~~~~~~~~~l~~~l~~-~k~~LlVlDdv~~~ 268 (658)
.++..... ...+..+....+.+.+.. ++..+||||+++..
T Consensus 108 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l 150 (394)
T PRK00411 108 RQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYL 150 (394)
T ss_pred HHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHh
Confidence 98865211 122345556666676653 46689999999864
No 34
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.69 E-value=1.7e-08 Score=107.10 Aligned_cols=168 Identities=27% Similarity=0.345 Sum_probs=137.4
Q ss_pred CceEEeccCCCCCcCCCccCCC--CCceEEEecCCCCCCccchHHhcCCCCCcEEEccCCCCCCCccccccCCCcceEEc
Q 047163 478 GPIAISLPHRDIQELPERLQCP--NLQLFLFFGKGYGPMQISDLFFEGTKELKDLSLTRIPFSSLPSSLGSLINLGTLCL 555 (658)
Q Consensus 478 ~~~~l~l~~~~~~~~~~~~~~~--~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~L 555 (658)
.+..+.+..+.+..+++..... +|+.|.+.+|. ...++.. ...+++|+.|++++|.+..+|...+.+++|+.|++
T Consensus 117 ~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~--i~~l~~~-~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~l 193 (394)
T COG4886 117 NLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNK--IESLPSP-LRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDL 193 (394)
T ss_pred ceeEEecCCcccccCccccccchhhcccccccccc--hhhhhhh-hhccccccccccCCchhhhhhhhhhhhhhhhheec
Confidence 6888999999999998887654 89999999996 4444322 57889999999999999999988878999999999
Q ss_pred cCCCCCCchh-hhccCCCcEEEccCccCCccchhhcCCCCCcEEcccCcccccccChhhhcCCCCCcEEEcccCCCCccc
Q 047163 556 EDCPRNDIAI-LRQLKKLEILRLRHSYTERLPLEIGQLTRLRLLDLSNCWRLKVIAPNVISKLSRLEELYMGNSFPKWDK 634 (658)
Q Consensus 556 ~~~~~~~l~~-~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~~~~~ 634 (658)
++|++..++. +..+.+|++|.+++|.+...|..+.++.++..|.+.+| .+..++.. ++.+++|+.|++++|.
T Consensus 194 s~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n-~~~~~~~~-~~~l~~l~~L~~s~n~----- 266 (394)
T COG4886 194 SGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNN-KLEDLPES-IGNLSNLETLDLSNNQ----- 266 (394)
T ss_pred cCCccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCc-eeeeccch-hccccccceecccccc-----
Confidence 9999999854 46777799999999977778888999999999998888 66655444 7889999999999853
Q ss_pred ccCCCccchhhcCCCCccccCCC
Q 047163 635 VEGGSNASLAELKGLSKLDTGHN 657 (658)
Q Consensus 635 ~~~~~~~~l~~l~~L~~L~l~~N 657 (658)
++ .++. ++.+.+|+.|++++|
T Consensus 267 i~-~i~~-~~~~~~l~~L~~s~n 287 (394)
T COG4886 267 IS-SISS-LGSLTNLRELDLSGN 287 (394)
T ss_pred cc-cccc-ccccCccCEEeccCc
Confidence 44 2333 888999999999886
No 35
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=98.68 E-value=3e-06 Score=92.18 Aligned_cols=272 Identities=13% Similarity=0.108 Sum_probs=164.1
Q ss_pred cccccccccchHHHHHHHHHHhccCCccEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCCC-CHHHHHHHHH
Q 047163 150 QVKDFEAFDSKMEVFQDVMEALKDDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQNP-DHHKIQDKLA 228 (658)
Q Consensus 150 ~~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~-~~~~~~~~i~ 228 (658)
+|..+...+-|....+.+-. ..+.+.+.|..+.|.|||||+.+....... =..+.|.++++.. ++....+.++
T Consensus 14 ~P~~~~~~v~R~rL~~~L~~---~~~~RL~li~APAGfGKttl~aq~~~~~~~---~~~v~Wlslde~dndp~rF~~yLi 87 (894)
T COG2909 14 RPVRPDNYVVRPRLLDRLRR---ANDYRLILISAPAGFGKTTLLAQWRELAAD---GAAVAWLSLDESDNDPARFLSYLI 87 (894)
T ss_pred CCCCcccccccHHHHHHHhc---CCCceEEEEeCCCCCcHHHHHHHHHHhcCc---ccceeEeecCCccCCHHHHHHHHH
Confidence 34445566778776655543 347899999999999999999999874332 2468899998764 6777777777
Q ss_pred HhcCCCCCC-------------CCCHHHHHHHHHHHHh-cCCeEEEEEecCCcccC------cccccCcccCCCcc----
Q 047163 229 FGLGMEFGF-------------NENMFQRASRLCERLK-KEKRLLIILDNIWIELE------FDKIGIPSGNVEKE---- 284 (658)
Q Consensus 229 ~~l~~~~~~-------------~~~~~~~~~~l~~~l~-~~k~~LlVlDdv~~~~~------~~~l~~~~~~~~~~---- 284 (658)
..++.-... ..+.......+..-+. ..++.++||||---..+ ++.+....|.+-..
T Consensus 88 ~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~S 167 (894)
T COG2909 88 AALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTS 167 (894)
T ss_pred HHHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEe
Confidence 776522211 1122223334444332 24688999999642211 11111111111110
Q ss_pred ------------------------ccccchhhHHhhhccC---CccHHHHHHHHHcCCchhHHHHHHHHhccC-ChHHHH
Q 047163 285 ------------------------RTDARSRCTIILTKTS---TIQPIADEIVEICGGLPVAVTTVANALKSK-SLDIWK 336 (658)
Q Consensus 285 ------------------------~~~~~~~~~~Lf~~~~---~~~~~~~~i~~~c~glPLai~~~g~~L~~~-~~~~w~ 336 (658)
-.....++-.+|.... -.....+.+.+..+|.+-|+..++=.++.. +.+.--
T Consensus 168 R~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l~Ld~~~~~~L~~~teGW~~al~L~aLa~~~~~~~~q~~ 247 (894)
T COG2909 168 RSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGSLPLDAADLKALYDRTEGWAAALQLIALALRNNTSAEQSL 247 (894)
T ss_pred ccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCCCCCChHHHHHHHhhcccHHHHHHHHHHHccCCCcHHHHh
Confidence 0112223666666554 334566788888889888888888777733 333222
Q ss_pred HHHHHHhcCCCCCCCchhHHHHHH-HHhhHhcCCchhHHHHHHHhcccccCCcccHHHHHHHHhhhcccccccCHHHHHH
Q 047163 337 DALNQLRSSNPREIDGMDKKVYTS-IELSYNLLASKEAKSLFRLCGLYNEGHAIQVASILRYGMGWGLLENVYTLEEARS 415 (658)
Q Consensus 337 ~~l~~l~~~~~~~~~~~~~~i~~~-l~~sy~~L~~~~~k~~fl~~~~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~ 415 (658)
..++ +..+.+... ..--++.||++ ++..++-||+++.-. ..|+..-..+ .
T Consensus 248 ~~Ls-----------G~~~~l~dYL~eeVld~Lp~~-l~~FLl~~svl~~f~----~eL~~~Ltg~-------------~ 298 (894)
T COG2909 248 RGLS-----------GAASHLSDYLVEEVLDRLPPE-LRDFLLQTSVLSRFN----DELCNALTGE-------------E 298 (894)
T ss_pred hhcc-----------chHHHHHHHHHHHHHhcCCHH-HHHHHHHHHhHHHhh----HHHHHHHhcC-------------C
Confidence 2221 112223332 23347889998 999999999987433 3343321111 1
Q ss_pred HHHHHHHHHHHcccccc--CCCCCceeecHHHHHHHHHHHccC
Q 047163 416 RVHRLIDNLKSSCLLLD--GDAKDEAKMYDVIHVVAVSIATGE 456 (658)
Q Consensus 416 ~~~~~~~~L~~~~ll~~--~~~~~~~~~h~lv~~~~~~~~~~~ 456 (658)
.....+++|.+++++-. .+....|+.|.+..+|.+.....+
T Consensus 299 ng~amLe~L~~~gLFl~~Ldd~~~WfryH~LFaeFL~~r~~~~ 341 (894)
T COG2909 299 NGQAMLEELERRGLFLQRLDDEGQWFRYHHLFAEFLRQRLQRE 341 (894)
T ss_pred cHHHHHHHHHhCCCceeeecCCCceeehhHHHHHHHHhhhccc
Confidence 23447888988998753 355678999999999999877664
No 36
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=98.64 E-value=3.3e-07 Score=96.19 Aligned_cols=114 Identities=23% Similarity=0.237 Sum_probs=82.3
Q ss_pred ccccchHHHHHHHHHHhc----cCCccEEEEEcCCCChHHHHHHHHHHHhhhc-cCC---CEEEEEEEcCCCCHHHHHHH
Q 047163 155 EAFDSKMEVFQDVMEALK----DDKLNIIGVYGMGGVGKTTLVKQVAKQVMED-KLF---DKVVMAEVTQNPDHHKIQDK 226 (658)
Q Consensus 155 ~~~~gr~~~~~~l~~~l~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F---~~~~wv~v~~~~~~~~~~~~ 226 (658)
..++||+++++.|..++. ....+.+.|+|++|+|||++++.+++..... ... -..+|+++....+...++..
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~~ 94 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLVE 94 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHHH
Confidence 468999999999999886 2345679999999999999999999876432 111 14567887777778889999
Q ss_pred HHHhcC---CCCC-CCCCHHHHHHHHHHHHh-cCCeEEEEEecCCcc
Q 047163 227 LAFGLG---MEFG-FNENMFQRASRLCERLK-KEKRLLIILDNIWIE 268 (658)
Q Consensus 227 i~~~l~---~~~~-~~~~~~~~~~~l~~~l~-~~k~~LlVlDdv~~~ 268 (658)
|+.++. .... ...+..+....+.+.+. .+++++||||+++..
T Consensus 95 i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L 141 (365)
T TIGR02928 95 LANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYL 141 (365)
T ss_pred HHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhh
Confidence 998883 3221 12233445556666664 356889999999876
No 37
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.55 E-value=1.8e-07 Score=106.50 Aligned_cols=135 Identities=23% Similarity=0.326 Sum_probs=107.9
Q ss_pred CCcCCCccCCCCCceEEEecCCCCCCccchHHhcCCCCCcEEEccCCC--CCCCccc-cccCCCcceEEccCCC-CCCc-
Q 047163 489 IQELPERLQCPNLQLFLFFGKGYGPMQISDLFFEGTKELKDLSLTRIP--FSSLPSS-LGSLINLGTLCLEDCP-RNDI- 563 (658)
Q Consensus 489 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~--~~~lp~~-i~~l~~L~~L~L~~~~-~~~l- 563 (658)
....|........|...+.+|. ...++.. ...+.|++|-+.+|. +..++.. |..++.|++|||++|. +..+
T Consensus 513 ~~~~~~~~~~~~~rr~s~~~~~--~~~~~~~--~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP 588 (889)
T KOG4658|consen 513 LSEIPQVKSWNSVRRMSLMNNK--IEHIAGS--SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLP 588 (889)
T ss_pred ccccccccchhheeEEEEeccc--hhhccCC--CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCC
Confidence 3346666677788888888875 3334442 244579999999986 5666544 6679999999999885 5666
Q ss_pred hhhhccCCCcEEEccCccCCccchhhcCCCCCcEEcccCcccccccChhhhcCCCCCcEEEcccC
Q 047163 564 AILRQLKKLEILRLRHSYTERLPLEIGQLTRLRLLDLSNCWRLKVIAPNVISKLSRLEELYMGNS 628 (658)
Q Consensus 564 ~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~ 628 (658)
.+++.|.+|++|+++++.+..+|.++++|+.|.+|++..+..+..+ ++.+..+++|++|.+...
T Consensus 589 ~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~-~~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 589 SSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESI-PGILLELQSLRVLRLPRS 652 (889)
T ss_pred hHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccc-cchhhhcccccEEEeecc
Confidence 7999999999999999999999999999999999999998666655 555677999999999764
No 38
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.54 E-value=3.5e-07 Score=80.47 Aligned_cols=93 Identities=22% Similarity=0.315 Sum_probs=70.9
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHHhhhc---cCCCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHH
Q 047163 176 LNIIGVYGMGGVGKTTLVKQVAKQVMED---KLFDKVVMAEVTQNPDHHKIQDKLAFGLGMEFGFNENMFQRASRLCERL 252 (658)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~---~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 252 (658)
.+++.|+|.+|+|||++++.+.+..... ..-..++|++++...+...+.+.|+..++.+........+....+.+.+
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l 83 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDAL 83 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHH
Confidence 4689999999999999999999987532 1123567999988889999999999999988764355667778888888
Q ss_pred hcCCeEEEEEecCCcc
Q 047163 253 KKEKRLLIILDNIWIE 268 (658)
Q Consensus 253 ~~~k~~LlVlDdv~~~ 268 (658)
...+..+||+||++..
T Consensus 84 ~~~~~~~lviDe~~~l 99 (131)
T PF13401_consen 84 DRRRVVLLVIDEADHL 99 (131)
T ss_dssp HHCTEEEEEEETTHHH
T ss_pred HhcCCeEEEEeChHhc
Confidence 8666679999999753
No 39
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.52 E-value=1.5e-08 Score=104.34 Aligned_cols=140 Identities=24% Similarity=0.301 Sum_probs=81.0
Q ss_pred eccCCCCCcCCCcc-CCCCCceEEEecCCCCCCccchHHhcCCCCCcEEEccCCCCCCCccccccCCCcceEEccCCCCC
Q 047163 483 SLPHRDIQELPERL-QCPNLQLFLFFGKGYGPMQISDLFFEGTKELKDLSLTRIPFSSLPSSLGSLINLGTLCLEDCPRN 561 (658)
Q Consensus 483 ~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~ 561 (658)
.+..|.+..+|... .+..|..|+++.|. ...+|..+ ..--|++|-+++|++..+|..++.+..|..|+.+.|.+.
T Consensus 104 iLy~n~~r~ip~~i~~L~~lt~l~ls~Nq--lS~lp~~l--C~lpLkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~ 179 (722)
T KOG0532|consen 104 ILYHNCIRTIPEAICNLEALTFLDLSSNQ--LSHLPDGL--CDLPLKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQ 179 (722)
T ss_pred HHHhccceecchhhhhhhHHHHhhhccch--hhcCChhh--hcCcceeEEEecCccccCCcccccchhHHHhhhhhhhhh
Confidence 34445554455443 45555556666554 33334332 223466666666666666666666666666666666665
Q ss_pred Cc-hhhhccCCCcEEEccCccCCccchhhcCCCCCcEEcccCcccccccChhhhcCCCCCcEEEcccCC
Q 047163 562 DI-AILRQLKKLEILRLRHSYTERLPLEIGQLTRLRLLDLSNCWRLKVIAPNVISKLSRLEELYMGNSF 629 (658)
Q Consensus 562 ~l-~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~ 629 (658)
.+ ..++.+.+|+.|+++.|.+..+|+.++. -.|..|+++.| ++..+|-. |.+++.|++|-|.+|+
T Consensus 180 slpsql~~l~slr~l~vrRn~l~~lp~El~~-LpLi~lDfScN-kis~iPv~-fr~m~~Lq~l~LenNP 245 (722)
T KOG0532|consen 180 SLPSQLGYLTSLRDLNVRRNHLEDLPEELCS-LPLIRLDFSCN-KISYLPVD-FRKMRHLQVLQLENNP 245 (722)
T ss_pred hchHHhhhHHHHHHHHHhhhhhhhCCHHHhC-CceeeeecccC-ceeecchh-hhhhhhheeeeeccCC
Confidence 55 5666666666666666666666665553 34566666666 56666655 5666666666666543
No 40
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.51 E-value=2.6e-07 Score=89.74 Aligned_cols=93 Identities=14% Similarity=0.092 Sum_probs=64.5
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCC--CCHHHHHHHHH-----HhcCCCCCCCCCH-HHHHH
Q 047163 175 KLNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQN--PDHHKIQDKLA-----FGLGMEFGFNENM-FQRAS 246 (658)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~--~~~~~~~~~i~-----~~l~~~~~~~~~~-~~~~~ 246 (658)
.-..++|+|++|+|||||++.+++..... +|+.++|+.+..+ .+..++++.+. ..++.+....... .....
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~ 93 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLE 93 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHH
Confidence 34589999999999999999999998764 8999999998777 78999999983 3333211100000 01122
Q ss_pred HHHHHHhcCCeEEEEEecCCcc
Q 047163 247 RLCERLKKEKRLLIILDNIWIE 268 (658)
Q Consensus 247 ~l~~~l~~~k~~LlVlDdv~~~ 268 (658)
........|++.++++|++...
T Consensus 94 ~a~~~~~~G~~vll~iDei~r~ 115 (249)
T cd01128 94 KAKRLVEHGKDVVILLDSITRL 115 (249)
T ss_pred HHHHHHHCCCCEEEEEECHHHh
Confidence 2233334579999999999754
No 41
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.46 E-value=1e-06 Score=90.62 Aligned_cols=251 Identities=13% Similarity=0.100 Sum_probs=129.8
Q ss_pred ccccccccchHHHHHHHHHHhc-----cCCccEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCCCCHHHHHH
Q 047163 151 VKDFEAFDSKMEVFQDVMEALK-----DDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQNPDHHKIQD 225 (658)
Q Consensus 151 ~~~~~~~~gr~~~~~~l~~~l~-----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~ 225 (658)
|.....|+|+++.++.+...+. ....+.+.|+|++|+||||+|+.+++..... + .++..+. ......+.
T Consensus 21 P~~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~--~---~~~~~~~-~~~~~~l~ 94 (328)
T PRK00080 21 PKSLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGVN--I---RITSGPA-LEKPGDLA 94 (328)
T ss_pred cCCHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCCC--e---EEEeccc-ccChHHHH
Confidence 4567789999999998877664 2345678999999999999999999987532 1 1222211 11122233
Q ss_pred HHHHhcCCCCC---CC-CC-HHHHHHHHHHHHhcCCeEEEEEecCCcccCcccccCc----------------ccCCC-c
Q 047163 226 KLAFGLGMEFG---FN-EN-MFQRASRLCERLKKEKRLLIILDNIWIELEFDKIGIP----------------SGNVE-K 283 (658)
Q Consensus 226 ~i~~~l~~~~~---~~-~~-~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~~l~~~----------------~~~~~-~ 283 (658)
.++..+....- ++ .. .....+.+...+. +.+..+|+|+..+...+.....+ +.+.. .
T Consensus 95 ~~l~~l~~~~vl~IDEi~~l~~~~~e~l~~~~e-~~~~~~~l~~~~~~~~~~~~l~~~~li~at~~~~~l~~~L~sRf~~ 173 (328)
T PRK00080 95 AILTNLEEGDVLFIDEIHRLSPVVEEILYPAME-DFRLDIMIGKGPAARSIRLDLPPFTLIGATTRAGLLTSPLRDRFGI 173 (328)
T ss_pred HHHHhcccCCEEEEecHhhcchHHHHHHHHHHH-hcceeeeeccCccccceeecCCCceEEeecCCcccCCHHHHHhcCe
Confidence 44444332210 00 00 0112233445555 46677888876554433211111 00000 0
Q ss_pred c---ccccchhhHHhhhccC------CccHHHHHHHHHcCCchhHHHHHHHHhccCChHHHHHHHHHHhcCCCCCCC-ch
Q 047163 284 E---RTDARSRCTIILTKTS------TIQPIADEIVEICGGLPVAVTTVANALKSKSLDIWKDALNQLRSSNPREID-GM 353 (658)
Q Consensus 284 ~---~~~~~~~~~~Lf~~~~------~~~~~~~~i~~~c~glPLai~~~g~~L~~~~~~~w~~~l~~l~~~~~~~~~-~~ 353 (658)
. ......+..+++.+.+ -.++....|++.|+|.|-.+..+...+ ..|.... . ...+. ..
T Consensus 174 ~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G~pR~a~~~l~~~-----~~~a~~~----~--~~~I~~~~ 242 (328)
T PRK00080 174 VQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRGTPRIANRLLRRV-----RDFAQVK----G--DGVITKEI 242 (328)
T ss_pred eeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCCCchHHHHHHHHH-----HHHHHHc----C--CCCCCHHH
Confidence 0 1111122455555443 344678899999999995444433322 1221111 0 00111 11
Q ss_pred hHHHHHHHHhhHhcCCchhHHHHHH-HhcccccCCcccHHHHHHHHhhhcccccccCHHHHHHHHHHHHH-HHHHccccc
Q 047163 354 DKKVYTSIELSYNLLASKEAKSLFR-LCGLYNEGHAIQVASILRYGMGWGLLENVYTLEEARSRVHRLID-NLKSSCLLL 431 (658)
Q Consensus 354 ~~~i~~~l~~sy~~L~~~~~k~~fl-~~~~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~~~~-~L~~~~ll~ 431 (658)
-......+...+..|++. .+..+. ....|+.+. +..+.+.... | .+ .+ ...+.++ .|++.+|++
T Consensus 243 v~~~l~~~~~~~~~l~~~-~~~~l~~~~~~~~~~~-~~~~~~a~~l---g--~~---~~----~~~~~~e~~Li~~~li~ 308 (328)
T PRK00080 243 ADKALDMLGVDELGLDEM-DRKYLRTIIEKFGGGP-VGLDTLAAAL---G--EE---RD----TIEDVYEPYLIQQGFIQ 308 (328)
T ss_pred HHHHHHHhCCCcCCCCHH-HHHHHHHHHHHcCCCc-eeHHHHHHHH---C--CC---cc----hHHHHhhHHHHHcCCcc
Confidence 122334456667788876 555554 566777664 7777664321 1 11 11 2223455 688889997
Q ss_pred cC
Q 047163 432 DG 433 (658)
Q Consensus 432 ~~ 433 (658)
..
T Consensus 309 ~~ 310 (328)
T PRK00080 309 RT 310 (328)
T ss_pred cC
Confidence 54
No 42
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.45 E-value=1.5e-07 Score=100.02 Aligned_cols=166 Identities=31% Similarity=0.371 Sum_probs=121.4
Q ss_pred EeccCCCC-CcCCCccCCCCCceEEEecCCCCCCccchHHhcCCC-CCcEEEccCCCCCCCccccccCCCcceEEccCCC
Q 047163 482 ISLPHRDI-QELPERLQCPNLQLFLFFGKGYGPMQISDLFFEGTK-ELKDLSLTRIPFSSLPSSLGSLINLGTLCLEDCP 559 (658)
Q Consensus 482 l~l~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~ 559 (658)
+....+.+ ........++.+..|.+.+|. ...+++. ...+. +|+.|++++|.+..+|..++.+++|+.|+++.|+
T Consensus 98 l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~--i~~i~~~-~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~ 174 (394)
T COG4886 98 LDLNLNRLRSNISELLELTNLTSLDLDNNN--ITDIPPL-IGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFND 174 (394)
T ss_pred eeccccccccCchhhhcccceeEEecCCcc--cccCccc-cccchhhcccccccccchhhhhhhhhccccccccccCCch
Confidence 33444444 333333455778888888875 4445443 23343 8899999999999888888889999999999998
Q ss_pred CCCch-hhhccCCCcEEEccCccCCccchhhcCCCCCcEEcccCcccccccChhhhcCCCCCcEEEcccCCCCcccccCC
Q 047163 560 RNDIA-ILRQLKKLEILRLRHSYTERLPLEIGQLTRLRLLDLSNCWRLKVIAPNVISKLSRLEELYMGNSFPKWDKVEGG 638 (658)
Q Consensus 560 ~~~l~-~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~ 638 (658)
+..++ ..+.+++|+.|++++|.+..+|..++.+..|+.|.+++| .....+.. +.++.++..|.+.++. +. .
T Consensus 175 l~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N-~~~~~~~~-~~~~~~l~~l~l~~n~-----~~-~ 246 (394)
T COG4886 175 LSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNN-SIIELLSS-LSNLKNLSGLELSNNK-----LE-D 246 (394)
T ss_pred hhhhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCC-cceecchh-hhhcccccccccCCce-----ee-e
Confidence 88884 444888999999999999999887777778999999888 44445444 6788888888866632 22 2
Q ss_pred CccchhhcCCCCccccCCCC
Q 047163 639 SNASLAELKGLSKLDTGHNR 658 (658)
Q Consensus 639 ~~~~l~~l~~L~~L~l~~N~ 658 (658)
.+..++.+.+|+.|++++|+
T Consensus 247 ~~~~~~~l~~l~~L~~s~n~ 266 (394)
T COG4886 247 LPESIGNLSNLETLDLSNNQ 266 (394)
T ss_pred ccchhccccccceecccccc
Confidence 36788899999999999885
No 43
>PLN03150 hypothetical protein; Provisional
Probab=98.43 E-value=4.4e-07 Score=101.17 Aligned_cols=103 Identities=22% Similarity=0.330 Sum_probs=79.1
Q ss_pred CCcEEEccCCCCC-CCccccccCCCcceEEccCCCCCC-c-hhhhccCCCcEEEccCccCC-ccchhhcCCCCCcEEccc
Q 047163 526 ELKDLSLTRIPFS-SLPSSLGSLINLGTLCLEDCPRND-I-AILRQLKKLEILRLRHSYTE-RLPLEIGQLTRLRLLDLS 601 (658)
Q Consensus 526 ~L~~L~l~~~~~~-~lp~~i~~l~~L~~L~L~~~~~~~-l-~~~~~l~~L~~L~l~~~~~~-~lp~~~~~l~~L~~L~l~ 601 (658)
.+..|+|++|.+. .+|..++.+++|+.|+|++|.+.. + ..++.+++|+.|+|++|.+. .+|..+++|++|++|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 3678888888887 678888888889999998888764 3 57888888888888888765 678888888888888888
Q ss_pred CcccccccChhhhcCC-CCCcEEEcccCC
Q 047163 602 NCWRLKVIAPNVISKL-SRLEELYMGNSF 629 (658)
Q Consensus 602 ~~~~l~~~~~~~i~~l-~~L~~L~l~~~~ 629 (658)
+| .++...|..++.+ .++..+++.+|.
T Consensus 499 ~N-~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 499 GN-SLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CC-cccccCChHHhhccccCceEEecCCc
Confidence 88 6664444446553 466778877754
No 44
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.43 E-value=9e-07 Score=89.54 Aligned_cols=100 Identities=12% Similarity=0.067 Sum_probs=66.7
Q ss_pred HHHHhc-cCCccEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCCC--CHHHHHHHHHHhcCCCCCCCCCHH-
Q 047163 167 VMEALK-DDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQNP--DHHKIQDKLAFGLGMEFGFNENMF- 242 (658)
Q Consensus 167 l~~~l~-~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~--~~~~~~~~i~~~l~~~~~~~~~~~- 242 (658)
+++.+. -+.-...+|+|++|+||||||+.+|+....+ +|+.++||.+.+.. ...++++.|...+-..........
T Consensus 159 vID~l~PIGkGQR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~ 237 (416)
T PRK09376 159 IIDLIAPIGKGQRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERH 237 (416)
T ss_pred eeeeecccccCceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHH
Confidence 344443 1333478999999999999999999999875 89999999999887 778888888632211111011111
Q ss_pred -----HHHHHHHHHHhcCCeEEEEEecCCc
Q 047163 243 -----QRASRLCERLKKEKRLLIILDNIWI 267 (658)
Q Consensus 243 -----~~~~~l~~~l~~~k~~LlVlDdv~~ 267 (658)
...+........|++++|++|++..
T Consensus 238 ~~~a~~~ie~Ae~~~e~G~dVlL~iDsItR 267 (416)
T PRK09376 238 VQVAEMVIEKAKRLVEHGKDVVILLDSITR 267 (416)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEEEChHH
Confidence 1111222222357999999999964
No 45
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.42 E-value=4.9e-06 Score=84.93 Aligned_cols=247 Identities=14% Similarity=0.095 Sum_probs=126.5
Q ss_pred cccccchHHHHHHHHHHhc-----cCCccEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCCCCHHHHHHHHH
Q 047163 154 FEAFDSKMEVFQDVMEALK-----DDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQNPDHHKIQDKLA 228 (658)
Q Consensus 154 ~~~~~gr~~~~~~l~~~l~-----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~ 228 (658)
..+|+|+++.++.|..++. ......+.++|++|+|||+||+.+++..... + ..+..+.......+ ...+
T Consensus 3 ~~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~--~---~~~~~~~~~~~~~l-~~~l 76 (305)
T TIGR00635 3 LAEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGVN--L---KITSGPALEKPGDL-AAIL 76 (305)
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCCC--E---EEeccchhcCchhH-HHHH
Confidence 3568999999999888875 2445678999999999999999999877532 2 12222111122222 2223
Q ss_pred HhcCCCCC------CCCCHHHHHHHHHHHHhcCCeEEEEEecCCcccCcccccCccc----------------CCC-cc-
Q 047163 229 FGLGMEFG------FNENMFQRASRLCERLKKEKRLLIILDNIWIELEFDKIGIPSG----------------NVE-KE- 284 (658)
Q Consensus 229 ~~l~~~~~------~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~~l~~~~~----------------~~~-~~- 284 (658)
..++...- .... .+....+...+. +.+..+|+|+..+..+|.....++. +.. ..
T Consensus 77 ~~~~~~~vl~iDEi~~l~-~~~~e~l~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~li~~t~~~~~l~~~l~sR~~~~~ 154 (305)
T TIGR00635 77 TNLEEGDVLFIDEIHRLS-PAVEELLYPAME-DFRLDIVIGKGPSARSVRLDLPPFTLVGATTRAGMLTSPLRDRFGIIL 154 (305)
T ss_pred HhcccCCEEEEehHhhhC-HHHHHHhhHHHh-hhheeeeeccCccccceeecCCCeEEEEecCCccccCHHHHhhcceEE
Confidence 33332210 0001 122344555565 4667788888766655542222110 000 00
Q ss_pred --ccccchhhHHhhhccC------CccHHHHHHHHHcCCchhHHHHHHHHhccCChHHHHHHHHHHhcCCCCCCC-chhH
Q 047163 285 --RTDARSRCTIILTKTS------TIQPIADEIVEICGGLPVAVTTVANALKSKSLDIWKDALNQLRSSNPREID-GMDK 355 (658)
Q Consensus 285 --~~~~~~~~~~Lf~~~~------~~~~~~~~i~~~c~glPLai~~~g~~L~~~~~~~w~~~l~~l~~~~~~~~~-~~~~ 355 (658)
......+..+++.+.+ -.++....|++.|+|.|-.+..++..+ |.... .... ..+. ..-.
T Consensus 155 ~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G~pR~~~~ll~~~-------~~~a~-~~~~---~~it~~~v~ 223 (305)
T TIGR00635 155 RLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRGTPRIANRLLRRV-------RDFAQ-VRGQ---KIINRDIAL 223 (305)
T ss_pred EeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCcchHHHHHHHH-------HHHHH-HcCC---CCcCHHHHH
Confidence 1111122444544433 235667889999999996554444322 11110 0000 0000 0111
Q ss_pred HHHHHHHhhHhcCCchhHHHHHH-HhcccccCCcccHHHHHHHHhhhcccccccCHHHHHHHHHHHHH-HHHHccccccC
Q 047163 356 KVYTSIELSYNLLASKEAKSLFR-LCGLYNEGHAIQVASILRYGMGWGLLENVYTLEEARSRVHRLID-NLKSSCLLLDG 433 (658)
Q Consensus 356 ~i~~~l~~sy~~L~~~~~k~~fl-~~~~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~~~~-~L~~~~ll~~~ 433 (658)
.....+...|..++++ .+..+. .++.++.+ .+..+.+.... |- ........++ .|++.+++...
T Consensus 224 ~~l~~l~~~~~~l~~~-~~~~L~al~~~~~~~-~~~~~~ia~~l---g~---------~~~~~~~~~e~~Li~~~li~~~ 289 (305)
T TIGR00635 224 KALEMLMIDELGLDEI-DRKLLSVLIEQFQGG-PVGLKTLAAAL---GE---------DADTIEDVYEPYLLQIGFLQRT 289 (305)
T ss_pred HHHHHhCCCCCCCCHH-HHHHHHHHHHHhCCC-cccHHHHHHHh---CC---------CcchHHHhhhHHHHHcCCcccC
Confidence 2222355667888876 555554 45666544 36665554321 10 1112334566 58889999754
No 46
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.38 E-value=6.7e-08 Score=96.61 Aligned_cols=150 Identities=17% Similarity=0.156 Sum_probs=80.5
Q ss_pred CceEEeccCCCCCcCCC---ccCCCCCceEEEecCCCCCCccchHHhcCCCCCcEEEccCCC-CCCCccccccCCCcceE
Q 047163 478 GPIAISLPHRDIQELPE---RLQCPNLQLFLFFGKGYGPMQISDLFFEGTKELKDLSLTRIP-FSSLPSSLGSLINLGTL 553 (658)
Q Consensus 478 ~~~~l~l~~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~lp~~i~~l~~L~~L 553 (658)
+++.|.++.|.+..... ...+++|+.|.+.+|+.+...+.. +...+++|.+|+|.+|. +...-.+...+..|+.|
T Consensus 173 ~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~-~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~L 251 (505)
T KOG3207|consen 173 SLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQW-ILLTFPSLEVLYLEANEIILIKATSTKILQTLQEL 251 (505)
T ss_pred cchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHH-HHHhCCcHHHhhhhcccccceecchhhhhhHHhhc
Confidence 55566666665533221 115566666666666644333322 34556667777777663 22111222335566777
Q ss_pred EccCCCCCCc---hhhhccCCCcEEEccCccCCcc--chh-----hcCCCCCcEEcccCcccccccCh-hhhcCCCCCcE
Q 047163 554 CLEDCPRNDI---AILRQLKKLEILRLRHSYTERL--PLE-----IGQLTRLRLLDLSNCWRLKVIAP-NVISKLSRLEE 622 (658)
Q Consensus 554 ~L~~~~~~~l---~~~~~l~~L~~L~l~~~~~~~l--p~~-----~~~l~~L~~L~l~~~~~l~~~~~-~~i~~l~~L~~ 622 (658)
+|++|++... +..+.++.|..|+++.|++.++ |+. ...+++|++|++..| ++...+. +.+..+++|++
T Consensus 252 dLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N-~I~~w~sl~~l~~l~nlk~ 330 (505)
T KOG3207|consen 252 DLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISEN-NIRDWRSLNHLRTLENLKH 330 (505)
T ss_pred cccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccC-ccccccccchhhccchhhh
Confidence 7777765444 4556666666677766666555 322 235566777777776 4433321 12445556666
Q ss_pred EEcccCC
Q 047163 623 LYMGNSF 629 (658)
Q Consensus 623 L~l~~~~ 629 (658)
|.+..+.
T Consensus 331 l~~~~n~ 337 (505)
T KOG3207|consen 331 LRITLNY 337 (505)
T ss_pred hhccccc
Confidence 6655533
No 47
>PTZ00202 tuzin; Provisional
Probab=98.37 E-value=1.3e-05 Score=81.64 Aligned_cols=104 Identities=17% Similarity=0.187 Sum_probs=73.8
Q ss_pred CcccccccccchHHHHHHHHHHhcc---CCccEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCCCCHHHHHH
Q 047163 149 MQVKDFEAFDSKMEVFQDVMEALKD---DKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQNPDHHKIQD 225 (658)
Q Consensus 149 ~~~~~~~~~~gr~~~~~~l~~~l~~---~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~ 225 (658)
..|++...|+||+.++..+...|.+ +..+++.|.|++|+|||||++.+..... + ...+++.. +..++++
T Consensus 256 ~lPa~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~----~-~qL~vNpr---g~eElLr 327 (550)
T PTZ00202 256 SAPAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEG----M-PAVFVDVR---GTEDTLR 327 (550)
T ss_pred CCCCCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcCC----c-eEEEECCC---CHHHHHH
Confidence 3457788999999999999888852 2345889999999999999999996553 1 13333433 6799999
Q ss_pred HHHHhcCCCCCCCCCHHHHHHHHHHHHh----c-CCeEEEEE
Q 047163 226 KLAFGLGMEFGFNENMFQRASRLCERLK----K-EKRLLIIL 262 (658)
Q Consensus 226 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~----~-~k~~LlVl 262 (658)
.|+.+++.+.. ....+....|.+.+. . |++.+||+
T Consensus 328 ~LL~ALGV~p~--~~k~dLLrqIqeaLl~~~~e~GrtPVLII 367 (550)
T PTZ00202 328 SVVKALGVPNV--EACGDLLDFISEACRRAKKMNGETPLLVL 367 (550)
T ss_pred HHHHHcCCCCc--ccHHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 99999998533 222344444444442 2 67777776
No 48
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.37 E-value=1.9e-06 Score=80.79 Aligned_cols=48 Identities=21% Similarity=0.342 Sum_probs=34.9
Q ss_pred cccchHHHHHHHHHHhc---cCCccEEEEEcCCCChHHHHHHHHHHHhhhc
Q 047163 156 AFDSKMEVFQDVMEALK---DDKLNIIGVYGMGGVGKTTLVKQVAKQVMED 203 (658)
Q Consensus 156 ~~~gr~~~~~~l~~~l~---~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 203 (658)
.|+||+++++++...+. ....+.+.|+|.+|+|||+|.+.++......
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 37999999999999983 4567899999999999999999999998765
No 49
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.35 E-value=5.9e-06 Score=85.06 Aligned_cols=112 Identities=23% Similarity=0.267 Sum_probs=88.1
Q ss_pred ccchHHHHHHHHHHhc----cCCccEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCCCCHHHHHHHHHHhcC
Q 047163 157 FDSKMEVFQDVMEALK----DDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQNPDHHKIQDKLAFGLG 232 (658)
Q Consensus 157 ~~gr~~~~~~l~~~l~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~ 232 (658)
+.+|+++++++...|. .+...-+.|+|..|.|||+.++.+.+.......=..+++|++-...+..+++..|+..++
T Consensus 19 l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~~~ 98 (366)
T COG1474 19 LPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNKLG 98 (366)
T ss_pred ccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHHHcC
Confidence 7899999999988775 333444999999999999999999999875421122789999999999999999999997
Q ss_pred CCCCCCCCHHHHHHHHHHHHhc-CCeEEEEEecCCcc
Q 047163 233 MEFGFNENMFQRASRLCERLKK-EKRLLIILDNIWIE 268 (658)
Q Consensus 233 ~~~~~~~~~~~~~~~l~~~l~~-~k~~LlVlDdv~~~ 268 (658)
..+....+..+....+.+.+.. ++.+++|||+++..
T Consensus 99 ~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L 135 (366)
T COG1474 99 KVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDAL 135 (366)
T ss_pred CCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhh
Confidence 4443345556666777777753 68899999999865
No 50
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.33 E-value=3.7e-07 Score=68.11 Aligned_cols=58 Identities=34% Similarity=0.476 Sum_probs=40.4
Q ss_pred CCCcEEEccCccCCccc-hhhcCCCCCcEEcccCcccccccChhhhcCCCCCcEEEcccC
Q 047163 570 KKLEILRLRHSYTERLP-LEIGQLTRLRLLDLSNCWRLKVIAPNVISKLSRLEELYMGNS 628 (658)
Q Consensus 570 ~~L~~L~l~~~~~~~lp-~~~~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~ 628 (658)
++|++|++++|.+..+| ..+.++++|++|++++| .++.+++..+.++++|++|++++|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSS-SESEEETTTTTTSTTESEEEETSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCC
Confidence 35667777777777776 35566777777777777 677777766777777777777764
No 51
>PLN03150 hypothetical protein; Provisional
Probab=98.29 E-value=1.6e-06 Score=96.60 Aligned_cols=101 Identities=23% Similarity=0.295 Sum_probs=52.7
Q ss_pred CceEEEecCCCCCCccchHHhcCCCCCcEEEccCCCCC-CCccccccCCCcceEEccCCCCCCc--hhhhccCCCcEEEc
Q 047163 501 LQLFLFFGKGYGPMQISDLFFEGTKELKDLSLTRIPFS-SLPSSLGSLINLGTLCLEDCPRNDI--AILRQLKKLEILRL 577 (658)
Q Consensus 501 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~lp~~i~~l~~L~~L~L~~~~~~~l--~~~~~l~~L~~L~l 577 (658)
++.|.+.+|.. ...+|.. +..+++|+.|+|++|.+. .+|..++.+++|+.|+|++|++... ..++.+++|++|+|
T Consensus 420 v~~L~L~~n~L-~g~ip~~-i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~L 497 (623)
T PLN03150 420 IDGLGLDNQGL-RGFIPND-ISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNL 497 (623)
T ss_pred EEEEECCCCCc-cccCCHH-HhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEEC
Confidence 44455555542 1223332 455566666666666555 4555555666666666666655432 45555666666666
Q ss_pred cCccCC-ccchhhcCC-CCCcEEcccCc
Q 047163 578 RHSYTE-RLPLEIGQL-TRLRLLDLSNC 603 (658)
Q Consensus 578 ~~~~~~-~lp~~~~~l-~~L~~L~l~~~ 603 (658)
++|.+. .+|..++.+ .++..+++.+|
T Consensus 498 s~N~l~g~iP~~l~~~~~~~~~l~~~~N 525 (623)
T PLN03150 498 NGNSLSGRVPAALGGRLLHRASFNFTDN 525 (623)
T ss_pred cCCcccccCChHHhhccccCceEEecCC
Confidence 555432 455555432 34455555555
No 52
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.28 E-value=1e-06 Score=86.12 Aligned_cols=46 Identities=28% Similarity=0.434 Sum_probs=38.2
Q ss_pred ccchHHHHHHHHHHhccCCccEEEEEcCCCChHHHHHHHHHHHhhh
Q 047163 157 FDSKMEVFQDVMEALKDDKLNIIGVYGMGGVGKTTLVKQVAKQVME 202 (658)
Q Consensus 157 ~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 202 (658)
|+||+++++.|.+++..+..+.+.|+|+.|+|||+|++.+.+....
T Consensus 1 F~gR~~el~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~~~ 46 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGPSQHILLYGPRGSGKTSLLKEFINELKE 46 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHCT-
T ss_pred CCCHHHHHHHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHhhh
Confidence 6899999999999887766789999999999999999999998843
No 53
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.27 E-value=1.9e-08 Score=106.24 Aligned_cols=170 Identities=21% Similarity=0.164 Sum_probs=119.9
Q ss_pred cCceEEeccCCCCCcCCCcc-CCCCCceEEEecCCC--------CCCccchHHhcCCCCCcEEEccCCCCCCCccccccC
Q 047163 477 KGPIAISLPHRDIQELPERL-QCPNLQLFLFFGKGY--------GPMQISDLFFEGTKELKDLSLTRIPFSSLPSSLGSL 547 (658)
Q Consensus 477 ~~~~~l~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~--------~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~i~~l 547 (658)
..+|+|.+.++++....... -..+|++|+..+.-- .+..+.+++ ....|.+.++++|.+..+-.++.-+
T Consensus 109 ~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~--~Wn~L~~a~fsyN~L~~mD~SLqll 186 (1096)
T KOG1859|consen 109 RSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSP--VWNKLATASFSYNRLVLMDESLQLL 186 (1096)
T ss_pred cceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccch--hhhhHhhhhcchhhHHhHHHHHHHH
Confidence 37889998888776532222 123455555543210 011111111 1235677788888888887888889
Q ss_pred CCcceEEccCCCCCCchhhhccCCCcEEEccCccCCccch-hhcCCCCCcEEcccCcccccccChhhhcCCCCCcEEEcc
Q 047163 548 INLGTLCLEDCPRNDIAILRQLKKLEILRLRHSYTERLPL-EIGQLTRLRLLDLSNCWRLKVIAPNVISKLSRLEELYMG 626 (658)
Q Consensus 548 ~~L~~L~L~~~~~~~l~~~~~l~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~ 626 (658)
+.|+.|+|++|++.....+-.+++|++|||++|.+..+|. +...+ .|+.|.+++| .++.+.. |.+|.+|+.|+++
T Consensus 187 ~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lrnN-~l~tL~g--ie~LksL~~LDls 262 (1096)
T KOG1859|consen 187 PALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLRNN-ALTTLRG--IENLKSLYGLDLS 262 (1096)
T ss_pred HHhhhhccchhhhhhhHHHHhcccccccccccchhccccccchhhh-hheeeeeccc-HHHhhhh--HHhhhhhhccchh
Confidence 9999999999999888888899999999999998888885 23343 4999999999 7887754 7899999999998
Q ss_pred cCCCCcccccC-CCccchhhcCCCCccccCCC
Q 047163 627 NSFPKWDKVEG-GSNASLAELKGLSKLDTGHN 657 (658)
Q Consensus 627 ~~~~~~~~~~~-~~~~~l~~l~~L~~L~l~~N 657 (658)
.|. +.+ ..-..+..|..|+.|.+.+|
T Consensus 263 yNl-----l~~hseL~pLwsLs~L~~L~LeGN 289 (1096)
T KOG1859|consen 263 YNL-----LSEHSELEPLWSLSSLIVLWLEGN 289 (1096)
T ss_pred Hhh-----hhcchhhhHHHHHHHHHHHhhcCC
Confidence 854 433 22335677888888888887
No 54
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.23 E-value=5.7e-07 Score=67.07 Aligned_cols=60 Identities=33% Similarity=0.469 Sum_probs=54.6
Q ss_pred CCCcEEcccCcccccccChhhhcCCCCCcEEEcccCCCCcccccCCCccchhhcCCCCccccCCCC
Q 047163 593 TRLRLLDLSNCWRLKVIAPNVISKLSRLEELYMGNSFPKWDKVEGGSNASLAELKGLSKLDTGHNR 658 (658)
Q Consensus 593 ~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~N~ 658 (658)
++|++|++++| .++.+|+..+.++++|++|++++| .++...|..|.++++|++|++++|+
T Consensus 1 p~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~N-----~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSNN-----NLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSS-TESEECTTTTTTGTTESEEEETSS-----SESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCC-CCCccCHHHHcCCCCCCEeEccCC-----ccCccCHHHHcCCCCCCEEeCcCCc
Confidence 57999999999 999999998999999999999985 4776778899999999999999995
No 55
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.21 E-value=1.1e-05 Score=72.30 Aligned_cols=58 Identities=22% Similarity=0.285 Sum_probs=45.4
Q ss_pred cchHHHHHHHHHHhccCCccEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCC
Q 047163 158 DSKMEVFQDVMEALKDDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQN 217 (658)
Q Consensus 158 ~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~ 217 (658)
.|++..++.+...+.....+.+.|+|.+|+|||++++.+++..... -..+++++.+..
T Consensus 1 ~~~~~~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~--~~~v~~~~~~~~ 58 (151)
T cd00009 1 VGQEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELFRP--GAPFLYLNASDL 58 (151)
T ss_pred CchHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhhcC--CCCeEEEehhhh
Confidence 3788889999888876566789999999999999999999987521 234566666544
No 56
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.20 E-value=4.3e-06 Score=85.16 Aligned_cols=91 Identities=13% Similarity=0.084 Sum_probs=63.9
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCC--CCHHHHHHHHHHhcCCCCCC--CCCHHHH----HHH
Q 047163 176 LNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQN--PDHHKIQDKLAFGLGMEFGF--NENMFQR----ASR 247 (658)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~--~~~~~~~~~i~~~l~~~~~~--~~~~~~~----~~~ 247 (658)
-..++|+|++|+|||||++.+++....+ +|+..+|+.+.++ .++.++++.+...+-...-. ....... .+.
T Consensus 168 Gq~~~IvG~~g~GKTtL~~~i~~~I~~n-hfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e~ 246 (415)
T TIGR00767 168 GQRGLIVAPPKAGKTVLLQKIAQAITRN-HPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIEK 246 (415)
T ss_pred CCEEEEECCCCCChhHHHHHHHHhhccc-CCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHHH
Confidence 3589999999999999999999998764 8999999999866 68889999985433211110 1111111 222
Q ss_pred HHHHHhcCCeEEEEEecCCc
Q 047163 248 LCERLKKEKRLLIILDNIWI 267 (658)
Q Consensus 248 l~~~l~~~k~~LlVlDdv~~ 267 (658)
.......|++++|++|++..
T Consensus 247 Ae~~~~~GkdVVLlIDEitR 266 (415)
T TIGR00767 247 AKRLVEHKKDVVILLDSITR 266 (415)
T ss_pred HHHHHHcCCCeEEEEEChhH
Confidence 23333458999999999964
No 57
>PF05729 NACHT: NACHT domain
Probab=98.18 E-value=5.4e-06 Score=76.15 Aligned_cols=86 Identities=28% Similarity=0.356 Sum_probs=56.0
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHhhhccC----CCEEEEEEEcCCCCHH---HHHHHHHHhcCCCCCCCCCHHHHHHHHH
Q 047163 177 NIIGVYGMGGVGKTTLVKQVAKQVMEDKL----FDKVVMAEVTQNPDHH---KIQDKLAFGLGMEFGFNENMFQRASRLC 249 (658)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~v~~~~~~~---~~~~~i~~~l~~~~~~~~~~~~~~~~l~ 249 (658)
+++.|+|.+|+||||+++.++........ +...+|.+.+...... .+...|......... ... ..+.
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~---~~~---~~~~ 74 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIA---PIE---ELLQ 74 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchh---hhH---HHHH
Confidence 58999999999999999999998876543 3456777776554332 344444444322211 111 1333
Q ss_pred HHHhcCCeEEEEEecCCcc
Q 047163 250 ERLKKEKRLLIILDNIWIE 268 (658)
Q Consensus 250 ~~l~~~k~~LlVlDdv~~~ 268 (658)
..+...+++++|+|++++.
T Consensus 75 ~~~~~~~~~llilDglDE~ 93 (166)
T PF05729_consen 75 ELLEKNKRVLLILDGLDEL 93 (166)
T ss_pred HHHHcCCceEEEEechHhc
Confidence 4444578999999999754
No 58
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.16 E-value=1.9e-05 Score=86.82 Aligned_cols=115 Identities=21% Similarity=0.162 Sum_probs=79.0
Q ss_pred cccccchHHHHHHHHHHhc----cCC-ccEEEEEcCCCChHHHHHHHHHHHhhhc---cCCC--EEEEEEEcCCCCHHHH
Q 047163 154 FEAFDSKMEVFQDVMEALK----DDK-LNIIGVYGMGGVGKTTLVKQVAKQVMED---KLFD--KVVMAEVTQNPDHHKI 223 (658)
Q Consensus 154 ~~~~~gr~~~~~~l~~~l~----~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~---~~F~--~~~wv~v~~~~~~~~~ 223 (658)
+..+.||+++++.|...|. ... ..++.|+|++|.|||+.++.|.+..... .... .+++|++..-.+...+
T Consensus 754 PD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sI 833 (1164)
T PTZ00112 754 PKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAA 833 (1164)
T ss_pred CCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHH
Confidence 4567899999999988875 222 3577899999999999999999876432 1122 3567777766778888
Q ss_pred HHHHHHhcCCCCC-CCCCHHHHHHHHHHHHh-c-CCeEEEEEecCCcc
Q 047163 224 QDKLAFGLGMEFG-FNENMFQRASRLCERLK-K-EKRLLIILDNIWIE 268 (658)
Q Consensus 224 ~~~i~~~l~~~~~-~~~~~~~~~~~l~~~l~-~-~k~~LlVlDdv~~~ 268 (658)
...|+.++..... ......+....++..+. . +...+||||+++..
T Consensus 834 YqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L 881 (1164)
T PTZ00112 834 YQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYL 881 (1164)
T ss_pred HHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhh
Confidence 8888888843322 12233345555555552 1 23458999999754
No 59
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.07 E-value=3.1e-05 Score=80.39 Aligned_cols=109 Identities=18% Similarity=0.215 Sum_probs=72.7
Q ss_pred cccccchHHHHHHHHHHhccCCccEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCCCCHHHHHHHHHH-hcC
Q 047163 154 FEAFDSKMEVFQDVMEALKDDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQNPDHHKIQDKLAF-GLG 232 (658)
Q Consensus 154 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~-~l~ 232 (658)
...+++.+..++.++..+... +.|.++|++|+|||++|+.+++.......|+.+.||.+++..+..+.+..+.- ..+
T Consensus 174 l~d~~i~e~~le~l~~~L~~~--~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP~~vg 251 (459)
T PRK11331 174 LNDLFIPETTIETILKRLTIK--KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPNGVG 251 (459)
T ss_pred hhcccCCHHHHHHHHHHHhcC--CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCCCCCC
Confidence 345678888899999888653 37888999999999999999998876667888999999988887766543210 011
Q ss_pred CCCCCCCCHHHHHHHHHHHHh-cCCeEEEEEecCCcc
Q 047163 233 MEFGFNENMFQRASRLCERLK-KEKRLLIILDNIWIE 268 (658)
Q Consensus 233 ~~~~~~~~~~~~~~~l~~~l~-~~k~~LlVlDdv~~~ 268 (658)
... .... ..+.+..... .++++++|+|++...
T Consensus 252 y~~--~~G~--f~~~~~~A~~~p~~~~vliIDEINRa 284 (459)
T PRK11331 252 FRR--KDGI--FYNFCQQAKEQPEKKYVFIIDEINRA 284 (459)
T ss_pred eEe--cCch--HHHHHHHHHhcccCCcEEEEehhhcc
Confidence 000 0010 0111111111 246899999999754
No 60
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.98 E-value=6.3e-06 Score=80.61 Aligned_cols=175 Identities=20% Similarity=0.225 Sum_probs=118.1
Q ss_pred CceEEeccCCCCCc--CCCc----cCCCCCceEEEecCCCCCCc---cc--------hHHhcCCCCCcEEEccCCCCCCC
Q 047163 478 GPIAISLPHRDIQE--LPER----LQCPNLQLFLFFGKGYGPMQ---IS--------DLFFEGTKELKDLSLTRIPFSSL 540 (658)
Q Consensus 478 ~~~~l~l~~~~~~~--~~~~----~~~~~L~~L~l~~~~~~~~~---~~--------~~~~~~~~~L~~L~l~~~~~~~l 540 (658)
+++.+.++.|.+.. ++.. ..+..|+.|.+.+|+..... +. ..-..+-+.||++..+.|++..-
T Consensus 93 ~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ 172 (382)
T KOG1909|consen 93 KLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENG 172 (382)
T ss_pred ceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccc
Confidence 67788888886632 2221 15788888888888743221 00 01123456888888888888754
Q ss_pred c-----cccccCCCcceEEccCCCCCCc------hhhhccCCCcEEEccCccCCc-----cchhhcCCCCCcEEcccCcc
Q 047163 541 P-----SSLGSLINLGTLCLEDCPRNDI------AILRQLKKLEILRLRHSYTER-----LPLEIGQLTRLRLLDLSNCW 604 (658)
Q Consensus 541 p-----~~i~~l~~L~~L~L~~~~~~~l------~~~~~l~~L~~L~l~~~~~~~-----lp~~~~~l~~L~~L~l~~~~ 604 (658)
+ ..+..++.|+.+.+..|.|..- ..+..+++|+.|||+.|.++. +...+..+++|+.|++++|
T Consensus 173 ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dc- 251 (382)
T KOG1909|consen 173 GATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDC- 251 (382)
T ss_pred cHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccc-
Confidence 4 3455667888888888876431 678888999999998885433 3455667788999999998
Q ss_pred cccccChhh-----hcCCCCCcEEEcccCCCCcccccC----CCccchhhcCCCCccccCCCC
Q 047163 605 RLKVIAPNV-----ISKLSRLEELYMGNSFPKWDKVEG----GSNASLAELKGLSKLDTGHNR 658 (658)
Q Consensus 605 ~l~~~~~~~-----i~~l~~L~~L~l~~~~~~~~~~~~----~~~~~l~~l~~L~~L~l~~N~ 658 (658)
.++.-.... -...++|++|.+.+|. ++. .+...+.+.+.|..|++++|.
T Consensus 252 ll~~~Ga~a~~~al~~~~p~L~vl~l~gNe-----It~da~~~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 252 LLENEGAIAFVDALKESAPSLEVLELAGNE-----ITRDAALALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred ccccccHHHHHHHHhccCCCCceeccCcch-----hHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence 776544321 2357889999988864 332 234456778899999999884
No 61
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.97 E-value=3.8e-06 Score=93.42 Aligned_cols=146 Identities=18% Similarity=0.266 Sum_probs=97.6
Q ss_pred CceEEeccCCCC--CcCCC--ccCCCCCceEEEecCCCCCCccchHHhcCCCCCcEEEccCCCCCCCccccccCCCcceE
Q 047163 478 GPIAISLPHRDI--QELPE--RLQCPNLQLFLFFGKGYGPMQISDLFFEGTKELKDLSLTRIPFSSLPSSLGSLINLGTL 553 (658)
Q Consensus 478 ~~~~l~l~~~~~--~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~i~~l~~L~~L 553 (658)
+++++.+.+... ...|. ...+|+|++|.+.+-......+ ...+.++++|+.||++++++..+ ..++.|++|+.|
T Consensus 123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF-~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L 200 (699)
T KOG3665|consen 123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDF-SQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVL 200 (699)
T ss_pred hhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhH-HHHhhccCccceeecCCCCccCc-HHHhccccHHHH
Confidence 788888877432 11222 1278999999998854333332 23467889999999999999888 778889999999
Q ss_pred EccCCCCCC---chhhhccCCCcEEEccCccCCccc-------hhhcCCCCCcEEcccCcccccc-cChhhhcCCCCCcE
Q 047163 554 CLEDCPRND---IAILRQLKKLEILRLRHSYTERLP-------LEIGQLTRLRLLDLSNCWRLKV-IAPNVISKLSRLEE 622 (658)
Q Consensus 554 ~L~~~~~~~---l~~~~~l~~L~~L~l~~~~~~~lp-------~~~~~l~~L~~L~l~~~~~l~~-~~~~~i~~l~~L~~ 622 (658)
.+.+-.+.. +..+.+|++|+.||++...-..-| +.-..|++|+.|+.+++ .+.. +....+..-++|+.
T Consensus 201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgT-di~~~~le~ll~sH~~L~~ 279 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGT-DINEEILEELLNSHPNLQQ 279 (699)
T ss_pred hccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCc-chhHHHHHHHHHhCccHhh
Confidence 888776654 368888999999999876333222 12235788888888877 3332 22333444556665
Q ss_pred EEcc
Q 047163 623 LYMG 626 (658)
Q Consensus 623 L~l~ 626 (658)
+.+-
T Consensus 280 i~~~ 283 (699)
T KOG3665|consen 280 IAAL 283 (699)
T ss_pred hhhh
Confidence 5544
No 62
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.97 E-value=1e-05 Score=55.29 Aligned_cols=38 Identities=39% Similarity=0.607 Sum_probs=20.7
Q ss_pred CCcEEEccCCCCCCCccccccCCCcceEEccCCCCCCc
Q 047163 526 ELKDLSLTRIPFSSLPSSLGSLINLGTLCLEDCPRNDI 563 (658)
Q Consensus 526 ~L~~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~l 563 (658)
+|++|++++|.+..+|+.++.|++|++|++++|+++.+
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i 39 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDI 39 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBE
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCC
Confidence 45566666666665555555555555555555555444
No 63
>PRK13342 recombination factor protein RarA; Reviewed
Probab=97.95 E-value=1.8e-05 Score=83.97 Aligned_cols=52 Identities=19% Similarity=0.326 Sum_probs=42.8
Q ss_pred cccccccccchHHHHHH---HHHHhccCCccEEEEEcCCCChHHHHHHHHHHHhh
Q 047163 150 QVKDFEAFDSKMEVFQD---VMEALKDDKLNIIGVYGMGGVGKTTLVKQVAKQVM 201 (658)
Q Consensus 150 ~~~~~~~~~gr~~~~~~---l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (658)
.|.....++|++..+.. +..++..+....+.|+|++|+||||+|+.+++...
T Consensus 7 RP~~l~d~vGq~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~~ 61 (413)
T PRK13342 7 RPKTLDEVVGQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGATD 61 (413)
T ss_pred CCCCHHHhcCcHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 34556778999888666 77777777777899999999999999999998764
No 64
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.88 E-value=1.4e-05 Score=54.52 Aligned_cols=39 Identities=36% Similarity=0.475 Sum_probs=22.8
Q ss_pred CCcEEEccCccCCccchhhcCCCCCcEEcccCcccccccC
Q 047163 571 KLEILRLRHSYTERLPLEIGQLTRLRLLDLSNCWRLKVIA 610 (658)
Q Consensus 571 ~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~~~ 610 (658)
+|++|++++|.+..+|+.+++|++|+.|++++| .+++++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N-~i~~i~ 40 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNN-PISDIS 40 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSS-CCSBEG
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCC-CCCCCc
Confidence 456666666666666665666666666666666 555544
No 65
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.87 E-value=5.8e-06 Score=80.84 Aligned_cols=130 Identities=18% Similarity=0.201 Sum_probs=61.2
Q ss_pred CCCCceEEEecCCCCCC--ccchHHhcCCCCCcEEEccCCCCCC-----CccccccCCCcceEEccCCCCCCc------h
Q 047163 498 CPNLQLFLFFGKGYGPM--QISDLFFEGTKELKDLSLTRIPFSS-----LPSSLGSLINLGTLCLEDCPRNDI------A 564 (658)
Q Consensus 498 ~~~L~~L~l~~~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~-----lp~~i~~l~~L~~L~L~~~~~~~l------~ 564 (658)
-++||++.+..|..... ......|...+.|+.+.+..|.+.. +...+..++||+.|+|+.|.++.. .
T Consensus 156 ~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Lak 235 (382)
T KOG1909|consen 156 KPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAK 235 (382)
T ss_pred CcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHH
Confidence 44566666555542111 0111224444566666666555541 223445556666666666654432 4
Q ss_pred hhhccCCCcEEEccCccCCc-----cchhh-cCCCCCcEEcccCcccccccC----hhhhcCCCCCcEEEcccC
Q 047163 565 ILRQLKKLEILRLRHSYTER-----LPLEI-GQLTRLRLLDLSNCWRLKVIA----PNVISKLSRLEELYMGNS 628 (658)
Q Consensus 565 ~~~~l~~L~~L~l~~~~~~~-----lp~~~-~~l~~L~~L~l~~~~~l~~~~----~~~i~~l~~L~~L~l~~~ 628 (658)
.++.+++|+.|++++|.+.. +-..+ ...++|+.|.+.+| .++.-. ...+...+.|..|++++|
T Consensus 236 aL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gN-eIt~da~~~la~~~~ek~dL~kLnLngN 308 (382)
T KOG1909|consen 236 ALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGN-EITRDAALALAACMAEKPDLEKLNLNGN 308 (382)
T ss_pred HhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcc-hhHHHHHHHHHHHHhcchhhHHhcCCcc
Confidence 45555566666666654332 11111 13456666666665 333211 111344555666666654
No 66
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.85 E-value=4.3e-06 Score=89.07 Aligned_cols=140 Identities=22% Similarity=0.269 Sum_probs=80.4
Q ss_pred EEeccCCCCCcCCC-ccCCCCCceEEEecCCCCCCccchHHhcCCCCCcEEEccCCCCCCCccccccCCCcceEEccCCC
Q 047163 481 AISLPHRDIQELPE-RLQCPNLQLFLFFGKGYGPMQISDLFFEGTKELKDLSLTRIPFSSLPSSLGSLINLGTLCLEDCP 559 (658)
Q Consensus 481 ~l~l~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~ 559 (658)
.+.+..|.+..+-. ...+++|..|.+.+|. +..+... +..+++|++|++++|.+..+. .+..++.|+.|++.+|.
T Consensus 76 ~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~--i~~i~~~-l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~~N~ 151 (414)
T KOG0531|consen 76 ELNLRQNLIAKILNHLSKLKSLEALDLYDNK--IEKIENL-LSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLSGNL 151 (414)
T ss_pred hhccchhhhhhhhcccccccceeeeeccccc--hhhcccc-hhhhhcchheecccccccccc-chhhccchhhheeccCc
Confidence 33344444443212 2356667777777765 2222221 345677777777777776653 34556667777777777
Q ss_pred CCCchhhhccCCCcEEEccCccCCccchh-hcCCCCCcEEcccCcccccccChhhhcCCCCCcEEEccc
Q 047163 560 RNDIAILRQLKKLEILRLRHSYTERLPLE-IGQLTRLRLLDLSNCWRLKVIAPNVISKLSRLEELYMGN 627 (658)
Q Consensus 560 ~~~l~~~~~l~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~ 627 (658)
+..+..+..+.+|+.+++++|.+..++.. ...+.+|+.+.+.+| .+..+.. +..+..+..+++..
T Consensus 152 i~~~~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n-~i~~i~~--~~~~~~l~~~~l~~ 217 (414)
T KOG0531|consen 152 ISDISGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGN-SIREIEG--LDLLKKLVLLSLLD 217 (414)
T ss_pred chhccCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCC-chhcccc--hHHHHHHHHhhccc
Confidence 77776666677777777777766666543 456667777777776 4443322 23333444444444
No 67
>COG3903 Predicted ATPase [General function prediction only]
Probab=97.84 E-value=4.3e-05 Score=77.09 Aligned_cols=263 Identities=20% Similarity=0.228 Sum_probs=158.6
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHhhhccCC-CEEEEEEEcCCCCHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHh
Q 047163 175 KLNIIGVYGMGGVGKTTLVKQVAKQVMEDKLF-DKVVMAEVTQNPDHHKIQDKLAFGLGMEFGFNENMFQRASRLCERLK 253 (658)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F-~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 253 (658)
..+.+.++|.|||||||++-.+.. .... | +.+.++....-.+...+.-.+...++...... ......+.....
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~-~~~~--~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~~g---~~~~~~~~~~~~ 86 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH-AASE--YADGVAFVDLAPITDPALVFPTLAGALGLHVQPG---DSAVDTLVRRIG 86 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh-Hhhh--cccceeeeeccccCchhHhHHHHHhhcccccccc---hHHHHHHHHHHh
Confidence 357899999999999999999998 4432 6 46777777766677777777777777765421 223334555555
Q ss_pred cCCeEEEEEecCCcccC-----cccccCcccCCCc--------------c---ccccch-hhHHhhhccC----------
Q 047163 254 KEKRLLIILDNIWIELE-----FDKIGIPSGNVEK--------------E---RTDARS-RCTIILTKTS---------- 300 (658)
Q Consensus 254 ~~k~~LlVlDdv~~~~~-----~~~l~~~~~~~~~--------------~---~~~~~~-~~~~Lf~~~~---------- 300 (658)
++|.++|+||..+..+ ...+...++.... . ...... ++.++|...+
T Consensus 87 -~rr~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l~~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f~l~ 165 (414)
T COG3903 87 -DRRALLVLDNCEHLLDACAALIVALLGACPRLAILATSREAILVAGEVHRRVPSLSLFDEAIELFVCRAVLVALSFWLT 165 (414)
T ss_pred -hhhHHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhcccccccccCCccccCCchhHHHHHHHHHhccceeec
Confidence 6899999999765421 0111111110000 0 111111 3666766554
Q ss_pred -CccHHHHHHHHHcCCchhHHHHHHHHhccCChHHHHHHH----HHHhcCCCCCCCchhHHHHHHHHhhHhcCCchhHHH
Q 047163 301 -TIQPIADEIVEICGGLPVAVTTVANALKSKSLDIWKDAL----NQLRSSNPREIDGMDKKVYTSIELSYNLLASKEAKS 375 (658)
Q Consensus 301 -~~~~~~~~i~~~c~glPLai~~~g~~L~~~~~~~w~~~l----~~l~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~ 375 (658)
.......+|.++.+|.|++|...++..++-.+.+-...+ ..+... ..............+.+||.-|... .+-
T Consensus 166 ~~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~-~r~a~~~~qtl~asl~ws~~lLtgw-e~~ 243 (414)
T COG3903 166 DDNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGG-ARLAVLRQQTLRASLDWSYALLTGW-ERA 243 (414)
T ss_pred CCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcc-cccchhHHHhccchhhhhhHhhhhH-HHH
Confidence 556788999999999999999999998877433332222 222222 1111223456788999999999987 788
Q ss_pred HHHHhcccccCCcccHHHHHHHHhhhcccccccCHHHHHHHHHHHHHHHHHccccccC--CCCCceeecHHHHHHHHHHH
Q 047163 376 LFRLCGLYNEGHAIQVASILRYGMGWGLLENVYTLEEARSRVHRLIDNLKSSCLLLDG--DAKDEAKMYDVIHVVAVSIA 453 (658)
Q Consensus 376 ~fl~~~~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~~~~~L~~~~ll~~~--~~~~~~~~h~lv~~~~~~~~ 453 (658)
.|.-++.|...+.-. ...|.+-|-... ..... .-..+..+++.++.... .....|+.-+-++.|+..+-
T Consensus 244 ~~~rLa~~~g~f~~~----l~~~~a~g~~~~----~~~y~-~~~a~~ll~~kslv~a~~~~~~a~~Rl~eT~r~YalaeL 314 (414)
T COG3903 244 LFGRLAVFVGGFDLG----LALAVAAGADVD----VPRYL-VLLALTLLVDKSLVVALDLLGRARYRLLETGRRYALAEL 314 (414)
T ss_pred Hhcchhhhhhhhccc----HHHHHhcCCccc----cchHH-HHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 888888888776332 233544442210 00111 11223446666665432 23345777777777777655
Q ss_pred cc
Q 047163 454 TG 455 (658)
Q Consensus 454 ~~ 455 (658)
.+
T Consensus 315 ~r 316 (414)
T COG3903 315 HR 316 (414)
T ss_pred Hh
Confidence 43
No 68
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=97.83 E-value=8.8e-05 Score=74.42 Aligned_cols=96 Identities=18% Similarity=0.251 Sum_probs=60.4
Q ss_pred CcccccccccchHHHHH---HHHHHhccCCccEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCCCCHHHHHH
Q 047163 149 MQVKDFEAFDSKMEVFQ---DVMEALKDDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQNPDHHKIQD 225 (658)
Q Consensus 149 ~~~~~~~~~~gr~~~~~---~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~ 225 (658)
+.|....+++|.+..+. -|-..+..+.+...-+||++|+||||||+.+....... | ..++-..+-.+-++
T Consensus 18 mRP~~lde~vGQ~HLlg~~~~lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~--f-----~~~sAv~~gvkdlr 90 (436)
T COG2256 18 LRPKSLDEVVGQEHLLGEGKPLRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTTNAA--F-----EALSAVTSGVKDLR 90 (436)
T ss_pred hCCCCHHHhcChHhhhCCCchHHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhhCCc--e-----EEeccccccHHHHH
Confidence 34555666666665442 23444557888889999999999999999999876543 3 33333332222223
Q ss_pred HHHHhcCCCCCCCCCHHHHHHHHHHHHhcCCeEEEEEecCCcc
Q 047163 226 KLAFGLGMEFGFNENMFQRASRLCERLKKEKRLLIILDNIWIE 268 (658)
Q Consensus 226 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~ 268 (658)
+++ +.-++....|++.+|.+|.|..-
T Consensus 91 ~i~-----------------e~a~~~~~~gr~tiLflDEIHRf 116 (436)
T COG2256 91 EII-----------------EEARKNRLLGRRTILFLDEIHRF 116 (436)
T ss_pred HHH-----------------HHHHHHHhcCCceEEEEehhhhc
Confidence 322 22223333478999999999653
No 69
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.83 E-value=2.1e-06 Score=81.90 Aligned_cols=61 Identities=26% Similarity=0.310 Sum_probs=26.4
Q ss_pred CCCCCceEEEecCCCCCCccchHHhcCCCCCcEEEccCCC-CCC--CccccccCCCcceEEccCCC
Q 047163 497 QCPNLQLFLFFGKGYGPMQISDLFFEGTKELKDLSLTRIP-FSS--LPSSLGSLINLGTLCLEDCP 559 (658)
Q Consensus 497 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~--lp~~i~~l~~L~~L~L~~~~ 559 (658)
.|.+|+.|.+.|+... ..+... +.+..+|+-|+++.++ +++ +.--+.+|+.|..|+|++|.
T Consensus 208 ~C~kLk~lSlEg~~Ld-D~I~~~-iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~ 271 (419)
T KOG2120|consen 208 QCSKLKNLSLEGLRLD-DPIVNT-IAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCF 271 (419)
T ss_pred HHHhhhhccccccccC-cHHHHH-HhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhh
Confidence 3455555555555411 112222 2344455555555543 221 11123445555555555554
No 70
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.78 E-value=0.00033 Score=68.75 Aligned_cols=106 Identities=16% Similarity=0.267 Sum_probs=76.9
Q ss_pred HHHHHHHHHhc---cCCccEEEEEcCCCChHHHHHHHHHHHhhhccCCC----EEEEEEEcCCCCHHHHHHHHHHhcCCC
Q 047163 162 EVFQDVMEALK---DDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFD----KVVMAEVTQNPDHHKIQDKLAFGLGME 234 (658)
Q Consensus 162 ~~~~~l~~~l~---~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~----~~~wv~v~~~~~~~~~~~~i~~~l~~~ 234 (658)
..++.+.+.+. ....+-+.|||.+|.|||++++.+...+-....-+ .++.|.....++...+...|+.+++.+
T Consensus 44 ~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP 123 (302)
T PF05621_consen 44 EALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAP 123 (302)
T ss_pred HHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcc
Confidence 34555555554 34456789999999999999999998875431111 577888889999999999999999998
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCeEEEEEecCCc
Q 047163 235 FGFNENMFQRASRLCERLKKEKRLLIILDNIWI 267 (658)
Q Consensus 235 ~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~ 267 (658)
.............+...++.-+-=+||+|++.+
T Consensus 124 ~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~ 156 (302)
T PF05621_consen 124 YRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHN 156 (302)
T ss_pred cCCCCCHHHHHHHHHHHHHHcCCcEEEeechHH
Confidence 764444444445555666544556889999864
No 71
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.77 E-value=1.5e-05 Score=88.82 Aligned_cols=132 Identities=20% Similarity=0.170 Sum_probs=98.9
Q ss_pred CCCCceEEEecCCCCCCccchHHhcCCCCCcEEEccCCCCC--CCccccccCCCcceEEccCCCCCCchhhhccCCCcEE
Q 047163 498 CPNLQLFLFFGKGYGPMQISDLFFEGTKELKDLSLTRIPFS--SLPSSLGSLINLGTLCLEDCPRNDIAILRQLKKLEIL 575 (658)
Q Consensus 498 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~--~lp~~i~~l~~L~~L~L~~~~~~~l~~~~~l~~L~~L 575 (658)
-.+|+.|++.|........+..+-.-+|.|+.|.+++-.+. .+-.-..++++|..||++++++..+.+++.|+||+.|
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L 200 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQVL 200 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHHH
Confidence 45788999988776666677777778899999999997765 2233345688999999999999999999999999999
Q ss_pred EccCccCCccc--hhhcCCCCCcEEcccCccccccc--Ch---hhhcCCCCCcEEEcccCC
Q 047163 576 RLRHSYTERLP--LEIGQLTRLRLLDLSNCWRLKVI--AP---NVISKLSRLEELYMGNSF 629 (658)
Q Consensus 576 ~l~~~~~~~lp--~~~~~l~~L~~L~l~~~~~l~~~--~~---~~i~~l~~L~~L~l~~~~ 629 (658)
.+++=.+..-+ ..+.+|++|++||+|.......- .. +.-..||.|+.|+.+++.
T Consensus 201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTd 261 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTD 261 (699)
T ss_pred hccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcc
Confidence 99886665544 35778999999999976322211 11 112358899999988754
No 72
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.76 E-value=6.3e-06 Score=87.81 Aligned_cols=127 Identities=26% Similarity=0.245 Sum_probs=102.4
Q ss_pred CCCCCceEEEecCCCCCCccchHHhcCCCCCcEEEccCCCCCCCccccccCCCcceEEccCCCCCCchhhhccCCCcEEE
Q 047163 497 QCPNLQLFLFFGKGYGPMQISDLFFEGTKELKDLSLTRIPFSSLPSSLGSLINLGTLCLEDCPRNDIAILRQLKKLEILR 576 (658)
Q Consensus 497 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~l~~~~~l~~L~~L~ 576 (658)
.+..+..+.+..|.... ....+..+++|..|++.+|.+..+...+..+++|++|++++|.|..+..+..+..|+.|+
T Consensus 70 ~l~~l~~l~l~~n~i~~---~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~ 146 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAK---ILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELN 146 (414)
T ss_pred HhHhHHhhccchhhhhh---hhcccccccceeeeeccccchhhcccchhhhhcchheeccccccccccchhhccchhhhe
Confidence 45566666666664221 112256789999999999999988766888999999999999999999999999999999
Q ss_pred ccCccCCccchhhcCCCCCcEEcccCcccccccCh-hhhcCCCCCcEEEcccCC
Q 047163 577 LRHSYTERLPLEIGQLTRLRLLDLSNCWRLKVIAP-NVISKLSRLEELYMGNSF 629 (658)
Q Consensus 577 l~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~~~~-~~i~~l~~L~~L~l~~~~ 629 (658)
+.+|.+..++. +..+.+|+.+++++| .+..+.+ . +..+.+|+.+.+.+|.
T Consensus 147 l~~N~i~~~~~-~~~l~~L~~l~l~~n-~i~~ie~~~-~~~~~~l~~l~l~~n~ 197 (414)
T KOG0531|consen 147 LSGNLISDISG-LESLKSLKLLDLSYN-RIVDIENDE-LSELISLEELDLGGNS 197 (414)
T ss_pred eccCcchhccC-CccchhhhcccCCcc-hhhhhhhhh-hhhccchHHHhccCCc
Confidence 99999988775 566899999999999 7777766 3 4788999999998854
No 73
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=97.75 E-value=8.4e-05 Score=73.10 Aligned_cols=97 Identities=13% Similarity=0.260 Sum_probs=63.2
Q ss_pred ccccccccchHHHHHH---HHHHhccCCccEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCCCCHHHHHHHH
Q 047163 151 VKDFEAFDSKMEVFQD---VMEALKDDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQNPDHHKIQDKL 227 (658)
Q Consensus 151 ~~~~~~~~gr~~~~~~---l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i 227 (658)
|....++||.+..+.+ |.+.+..+.++.+.+||++|+||||||+.+....+... +.+|..|-...-..-.++|
T Consensus 134 PktL~dyvGQ~hlv~q~gllrs~ieq~~ipSmIlWGppG~GKTtlArlia~tsk~~S----yrfvelSAt~a~t~dvR~i 209 (554)
T KOG2028|consen 134 PKTLDDYVGQSHLVGQDGLLRSLIEQNRIPSMILWGPPGTGKTTLARLIASTSKKHS----YRFVELSATNAKTNDVRDI 209 (554)
T ss_pred cchHHHhcchhhhcCcchHHHHHHHcCCCCceEEecCCCCchHHHHHHHHhhcCCCc----eEEEEEeccccchHHHHHH
Confidence 3334444554443321 23334468888999999999999999999998876432 6688888776555555666
Q ss_pred HHhcCCCCCCCCCHHHHHHHHHHHHhcCCeEEEEEecCCc
Q 047163 228 AFGLGMEFGFNENMFQRASRLCERLKKEKRLLIILDNIWI 267 (658)
Q Consensus 228 ~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~ 267 (658)
+++.. . ...+. ++|..|.+|.|..
T Consensus 210 fe~aq--------------~-~~~l~-krkTilFiDEiHR 233 (554)
T KOG2028|consen 210 FEQAQ--------------N-EKSLT-KRKTILFIDEIHR 233 (554)
T ss_pred HHHHH--------------H-HHhhh-cceeEEEeHHhhh
Confidence 54421 0 11222 5889999999854
No 74
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=97.71 E-value=0.0015 Score=61.28 Aligned_cols=55 Identities=22% Similarity=0.400 Sum_probs=38.7
Q ss_pred CcccccccccchHHHHHHHHHHhc-----cCCccEEEEEcCCCChHHHHHHHHHHHhhhc
Q 047163 149 MQVKDFEAFDSKMEVFQDVMEALK-----DDKLNIIGVYGMGGVGKTTLVKQVAKQVMED 203 (658)
Q Consensus 149 ~~~~~~~~~~gr~~~~~~l~~~l~-----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 203 (658)
+.|....+|+|.+..++.+--++. .+.+..+-+||++|+||||||..+++.....
T Consensus 18 lRP~~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~ 77 (233)
T PF05496_consen 18 LRPKSLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELGVN 77 (233)
T ss_dssp TS-SSCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT--
T ss_pred cCCCCHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccCCC
Confidence 455678889999998887654443 3456789999999999999999999988754
No 75
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.69 E-value=1.1e-06 Score=93.36 Aligned_cols=128 Identities=18% Similarity=0.127 Sum_probs=88.0
Q ss_pred CceEEeccCCCCCcCCCcc-CCCCCceEEEecCCCCCCccchHHhcCCCCCcEEEccCCCCCCCccccccCCCcceEEcc
Q 047163 478 GPIAISLPHRDIQELPERL-QCPNLQLFLFFGKGYGPMQISDLFFEGTKELKDLSLTRIPFSSLPSSLGSLINLGTLCLE 556 (658)
Q Consensus 478 ~~~~l~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~L~ 556 (658)
.+..+++.+|....+...+ -++.|++|+++.|.+ ..+. ++..++.|++|||++|.+..+|..-..-.+|+.|.++
T Consensus 165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~--~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lr 240 (1096)
T KOG1859|consen 165 KLATASFSYNRLVLMDESLQLLPALESLNLSHNKF--TKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLR 240 (1096)
T ss_pred hHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhh--hhhH--HHHhcccccccccccchhccccccchhhhhheeeeec
Confidence 4556666677665554444 467788888888863 2222 4677888888888888888777532222348888888
Q ss_pred CCCCCCchhhhccCCCcEEEccCccCCccc--hhhcCCCCCcEEcccCcccccccC
Q 047163 557 DCPRNDIAILRQLKKLEILRLRHSYTERLP--LEIGQLTRLRLLDLSNCWRLKVIA 610 (658)
Q Consensus 557 ~~~~~~l~~~~~l~~L~~L~l~~~~~~~lp--~~~~~l~~L~~L~l~~~~~l~~~~ 610 (658)
+|-+..+.++.+|.+|+.||+++|-+.... .-++.|..|+.|+|.+| .+-.-|
T Consensus 241 nN~l~tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGN-Pl~c~p 295 (1096)
T KOG1859|consen 241 NNALTTLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGN-PLCCAP 295 (1096)
T ss_pred ccHHHhhhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCC-ccccCH
Confidence 888888888888888888888888554432 23566778888888888 444433
No 76
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.68 E-value=8.4e-06 Score=68.91 Aligned_cols=102 Identities=22% Similarity=0.236 Sum_probs=77.8
Q ss_pred CCCcEEEccCCCCCCCcc---ccccCCCcceEEccCCCCCCc-hhh-hccCCCcEEEccCccCCccchhhcCCCCCcEEc
Q 047163 525 KELKDLSLTRIPFSSLPS---SLGSLINLGTLCLEDCPRNDI-AIL-RQLKKLEILRLRHSYTERLPLEIGQLTRLRLLD 599 (658)
Q Consensus 525 ~~L~~L~l~~~~~~~lp~---~i~~l~~L~~L~L~~~~~~~l-~~~-~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~ 599 (658)
+.+..++|+.|.+-.+++ .+....+|...+|++|.+..+ +.+ .+.+-+.+|+|.+|.+..+|..+..++.|+.|+
T Consensus 27 kE~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lN 106 (177)
T KOG4579|consen 27 KELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLN 106 (177)
T ss_pred HHhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcc
Confidence 567788888888775554 444566788888999888877 444 445578889999999999998888899999999
Q ss_pred ccCcccccccChhhhcCCCCCcEEEcccC
Q 047163 600 LSNCWRLKVIAPNVISKLSRLEELYMGNS 628 (658)
Q Consensus 600 l~~~~~l~~~~~~~i~~l~~L~~L~l~~~ 628 (658)
++.| .+...|.- +-.|.+|-.|+..++
T Consensus 107 l~~N-~l~~~p~v-i~~L~~l~~Lds~~n 133 (177)
T KOG4579|consen 107 LRFN-PLNAEPRV-IAPLIKLDMLDSPEN 133 (177)
T ss_pred cccC-ccccchHH-HHHHHhHHHhcCCCC
Confidence 9988 67777665 555778888877664
No 77
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.64 E-value=0.00039 Score=69.28 Aligned_cols=114 Identities=18% Similarity=0.230 Sum_probs=79.6
Q ss_pred ccccchHHHHHHHHHHhccCC---ccEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCCCCHHHHHHHHHHhc
Q 047163 155 EAFDSKMEVFQDVMEALKDDK---LNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQNPDHHKIQDKLAFGL 231 (658)
Q Consensus 155 ~~~~gr~~~~~~l~~~l~~~~---~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l 231 (658)
..+.+|+.+++.+...+.+.. +..|.|.|-.|.|||.+.+.+.+.... ..+|+++-+.++...+...|+...
T Consensus 6 ~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~-----~~vw~n~~ecft~~~lle~IL~~~ 80 (438)
T KOG2543|consen 6 PNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLNL-----ENVWLNCVECFTYAILLEKILNKS 80 (438)
T ss_pred cCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcCC-----cceeeehHHhccHHHHHHHHHHHh
Confidence 456799999999998886322 345589999999999999999988732 357999999999999999999988
Q ss_pred CCCCCCCCCH---HHHHHHHHHHHh-------cCCeEEEEEecCCcccCccc
Q 047163 232 GMEFGFNENM---FQRASRLCERLK-------KEKRLLIILDNIWIELEFDK 273 (658)
Q Consensus 232 ~~~~~~~~~~---~~~~~~l~~~l~-------~~k~~LlVlDdv~~~~~~~~ 273 (658)
+..+...... .+........+. .++.++||||+++...+.+.
T Consensus 81 ~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a 132 (438)
T KOG2543|consen 81 QLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDA 132 (438)
T ss_pred ccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccch
Confidence 5222211111 112222222222 24689999999987655443
No 78
>PF13173 AAA_14: AAA domain
Probab=97.61 E-value=9.3e-05 Score=64.59 Aligned_cols=78 Identities=26% Similarity=0.328 Sum_probs=50.7
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhcC
Q 047163 176 LNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQNPDHHKIQDKLAFGLGMEFGFNENMFQRASRLCERLKKE 255 (658)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 255 (658)
-+++.|.|+.|+||||++++++.+.. ....++++++.+........ .+....+.+... +
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~~~~~~~-----------------~~~~~~~~~~~~-~ 60 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDDPRDRRLAD-----------------PDLLEYFLELIK-P 60 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCCHHHHHHhh-----------------hhhHHHHHHhhc-c
Confidence 36899999999999999999998875 23556777765442211000 001222333332 3
Q ss_pred CeEEEEEecCCcccCcccc
Q 047163 256 KRLLIILDNIWIELEFDKI 274 (658)
Q Consensus 256 k~~LlVlDdv~~~~~~~~l 274 (658)
++.+|+||++....+|...
T Consensus 61 ~~~~i~iDEiq~~~~~~~~ 79 (128)
T PF13173_consen 61 GKKYIFIDEIQYLPDWEDA 79 (128)
T ss_pred CCcEEEEehhhhhccHHHH
Confidence 6788999999887777654
No 79
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.59 E-value=0.00012 Score=75.30 Aligned_cols=115 Identities=15% Similarity=0.274 Sum_probs=77.0
Q ss_pred CCCCCceEEEecCCCCCCccchHHhcCCCCCcEEEccCCC-CCCCccccccCCCcceEEccCC-CCCCchhhhccCCCcE
Q 047163 497 QCPNLQLFLFFGKGYGPMQISDLFFEGTKELKDLSLTRIP-FSSLPSSLGSLINLGTLCLEDC-PRNDIAILRQLKKLEI 574 (658)
Q Consensus 497 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~lp~~i~~l~~L~~L~L~~~-~~~~l~~~~~l~~L~~ 574 (658)
.+++++.|.+++|. ...+|. -..+|+.|.+++|. +..+|..+ ..+|++|.+++| .+..++ .+|+.
T Consensus 50 ~~~~l~~L~Is~c~--L~sLP~----LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP-----~sLe~ 116 (426)
T PRK15386 50 EARASGRLYIKDCD--IESLPV----LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLP-----ESVRS 116 (426)
T ss_pred HhcCCCEEEeCCCC--CcccCC----CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccc-----cccce
Confidence 46889999999884 445552 13479999999854 56777655 368999999998 454432 35777
Q ss_pred EEccCc---cCCccchhhcCC------------------CCCcEEcccCcccccccChhhhcCCCCCcEEEcccC
Q 047163 575 LRLRHS---YTERLPLEIGQL------------------TRLRLLDLSNCWRLKVIAPNVISKLSRLEELYMGNS 628 (658)
Q Consensus 575 L~l~~~---~~~~lp~~~~~l------------------~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~ 628 (658)
|++..+ .+..+|+++..| ++|++|++++|. ...+|+. +. .+|+.|.++.+
T Consensus 117 L~L~~n~~~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~-~i~LP~~-LP--~SLk~L~ls~n 187 (426)
T PRK15386 117 LEIKGSATDSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCS-NIILPEK-LP--ESLQSITLHIE 187 (426)
T ss_pred EEeCCCCCcccccCcchHhheeccccccccccccccccCCcccEEEecCCC-cccCccc-cc--ccCcEEEeccc
Confidence 777665 366777766544 267888888873 3334432 22 47888887654
No 80
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.53 E-value=0.00038 Score=71.63 Aligned_cols=133 Identities=18% Similarity=0.224 Sum_probs=79.6
Q ss_pred CceEEeccCCCCCcCCCccCCCCCceEEEecCCCCCCccchHHhcCCCCCcEEEccCC-CCCCCccccccCCCcceEEcc
Q 047163 478 GPIAISLPHRDIQELPERLQCPNLQLFLFFGKGYGPMQISDLFFEGTKELKDLSLTRI-PFSSLPSSLGSLINLGTLCLE 556 (658)
Q Consensus 478 ~~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~lp~~i~~l~~L~~L~L~ 556 (658)
..++|.++.|.+..+|. -.++|++|.+.++. ....+|..+ ..+|++|++++| .+..+|.. |+.|.+.
T Consensus 53 ~l~~L~Is~c~L~sLP~--LP~sLtsL~Lsnc~-nLtsLP~~L---P~nLe~L~Ls~Cs~L~sLP~s------Le~L~L~ 120 (426)
T PRK15386 53 ASGRLYIKDCDIESLPV--LPNELTEITIENCN-NLTTLPGSI---PEGLEKLTVCHCPEISGLPES------VRSLEIK 120 (426)
T ss_pred CCCEEEeCCCCCcccCC--CCCCCcEEEccCCC-CcccCCchh---hhhhhheEccCcccccccccc------cceEEeC
Confidence 67788888888877773 22368888887754 334455432 257888888887 56666654 3334443
Q ss_pred CCCC---CCc-hhhhc-----------------c-CCCcEEEccCccCCccchhhcCCCCCcEEcccCcccccc--cChh
Q 047163 557 DCPR---NDI-AILRQ-----------------L-KKLEILRLRHSYTERLPLEIGQLTRLRLLDLSNCWRLKV--IAPN 612 (658)
Q Consensus 557 ~~~~---~~l-~~~~~-----------------l-~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~--~~~~ 612 (658)
.+.. ..+ +++.. + ++|++|++++|....+|..+. .+|++|.++.+ .... ++.
T Consensus 121 ~n~~~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i~LP~~LP--~SLk~L~ls~n-~~~sLeI~~- 196 (426)
T PRK15386 121 GSATDSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNIILPEKLP--ESLQSITLHIE-QKTTWNISF- 196 (426)
T ss_pred CCCCcccccCcchHhheeccccccccccccccccCCcccEEEecCCCcccCccccc--ccCcEEEeccc-ccccccCcc-
Confidence 3321 111 11111 2 479999999997766776544 58999998875 2222 222
Q ss_pred hhcCC-CCCcEEEcccCC
Q 047163 613 VISKL-SRLEELYMGNSF 629 (658)
Q Consensus 613 ~i~~l-~~L~~L~l~~~~ 629 (658)
+.+ +++ .|++.+|.
T Consensus 197 --~sLP~nl-~L~f~n~l 211 (426)
T PRK15386 197 --EGFPDGL-DIDLQNSV 211 (426)
T ss_pred --ccccccc-Eechhhhc
Confidence 222 345 67776653
No 81
>PLN03025 replication factor C subunit; Provisional
Probab=97.52 E-value=0.00053 Score=70.25 Aligned_cols=52 Identities=15% Similarity=0.265 Sum_probs=43.8
Q ss_pred cccccccccchHHHHHHHHHHhccCCccEEEEEcCCCChHHHHHHHHHHHhh
Q 047163 150 QVKDFEAFDSKMEVFQDVMEALKDDKLNIIGVYGMGGVGKTTLVKQVAKQVM 201 (658)
Q Consensus 150 ~~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (658)
.|....+++|.+..++.|..++..+..+.+.++|++|+||||+|+.+++...
T Consensus 8 rP~~l~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~ 59 (319)
T PLN03025 8 RPTKLDDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELL 59 (319)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHh
Confidence 3456677889999888888887777777788999999999999999998864
No 82
>PRK04195 replication factor C large subunit; Provisional
Probab=97.52 E-value=0.00031 Score=76.18 Aligned_cols=52 Identities=21% Similarity=0.284 Sum_probs=43.4
Q ss_pred cccccccccchHHHHHHHHHHhcc---C-CccEEEEEcCCCChHHHHHHHHHHHhh
Q 047163 150 QVKDFEAFDSKMEVFQDVMEALKD---D-KLNIIGVYGMGGVGKTTLVKQVAKQVM 201 (658)
Q Consensus 150 ~~~~~~~~~gr~~~~~~l~~~l~~---~-~~~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (658)
.|.....++|+++.++.+.+|+.. + ..+.+.|+|++|+||||+|+.+++...
T Consensus 9 rP~~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~ 64 (482)
T PRK04195 9 RPKTLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYG 64 (482)
T ss_pred CCCCHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 345677799999999999998862 2 267899999999999999999998873
No 83
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=97.51 E-value=0.002 Score=70.94 Aligned_cols=51 Identities=33% Similarity=0.432 Sum_probs=42.9
Q ss_pred ccccccccchHHHHHHHHHHhccCCcc-EEEEEcCCCChHHHHHHHHHHHhh
Q 047163 151 VKDFEAFDSKMEVFQDVMEALKDDKLN-IIGVYGMGGVGKTTLVKQVAKQVM 201 (658)
Q Consensus 151 ~~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~ 201 (658)
|....+++|.+..++.|.+++..+++. .+.++|..|+||||+|+.+.+...
T Consensus 12 PqtFdEVIGQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLn 63 (830)
T PRK07003 12 PKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALN 63 (830)
T ss_pred CCcHHHHcCcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 456778899999999999998866644 557999999999999999998764
No 84
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=97.51 E-value=0.019 Score=63.88 Aligned_cols=52 Identities=19% Similarity=0.290 Sum_probs=43.2
Q ss_pred ccccccccchHHHHHHHHHHhccCCccEEEEEcCCCChHHHHHHHHHHHhhh
Q 047163 151 VKDFEAFDSKMEVFQDVMEALKDDKLNIIGVYGMGGVGKTTLVKQVAKQVME 202 (658)
Q Consensus 151 ~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 202 (658)
|.....++|++..+..+...+.......+.|+|++|+||||+|+.+++....
T Consensus 150 p~~~~~iiGqs~~~~~l~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~ 201 (615)
T TIGR02903 150 PRAFSEIVGQERAIKALLAKVASPFPQHIILYGPPGVGKTTAARLALEEAKK 201 (615)
T ss_pred cCcHHhceeCcHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhhh
Confidence 3455678899999988888776566678999999999999999999987754
No 85
>PRK08118 topology modulation protein; Reviewed
Probab=97.50 E-value=5.9e-05 Score=69.03 Aligned_cols=35 Identities=29% Similarity=0.450 Sum_probs=29.2
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHhhhc-cCCCEEEE
Q 047163 177 NIIGVYGMGGVGKTTLVKQVAKQVMED-KLFDKVVM 211 (658)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~w 211 (658)
+.|.|+|++|+||||||+.+++..... .+||..+|
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 368999999999999999999997653 45777776
No 86
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.45 E-value=0.00063 Score=78.61 Aligned_cols=101 Identities=19% Similarity=0.381 Sum_probs=65.3
Q ss_pred cccccchHHHHHHHHHHhccCCccEEEEEcCCCChHHHHHHHHHHHhhhccC---C-CEEEEEEEcCCCCHHHHHHHHHH
Q 047163 154 FEAFDSKMEVFQDVMEALKDDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKL---F-DKVVMAEVTQNPDHHKIQDKLAF 229 (658)
Q Consensus 154 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~---F-~~~~wv~v~~~~~~~~~~~~i~~ 229 (658)
...++||+++++.+++.|.....+-+.++|.+|+|||++|+.++........ . +..+|. + +... ++.
T Consensus 178 ~~~~igr~~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~-l----~~~~----l~a 248 (821)
T CHL00095 178 LDPVIGREKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVIT-L----DIGL----LLA 248 (821)
T ss_pred CCCCCCcHHHHHHHHHHHcccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE-e----eHHH----Hhc
Confidence 4568999999999999998555556679999999999999999998753211 1 234442 2 1111 111
Q ss_pred hcCCCCCCCCCHHHHHHHHHHHHhcCCeEEEEEecCCc
Q 047163 230 GLGMEFGFNENMFQRASRLCERLKKEKRLLIILDNIWI 267 (658)
Q Consensus 230 ~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~ 267 (658)
. .. . ....++....+.+.+...++.+|++|++..
T Consensus 249 g--~~-~-~ge~e~rl~~i~~~~~~~~~~ILfiDEih~ 282 (821)
T CHL00095 249 G--TK-Y-RGEFEERLKRIFDEIQENNNIILVIDEVHT 282 (821)
T ss_pred c--CC-C-ccHHHHHHHHHHHHHHhcCCeEEEEecHHH
Confidence 1 11 1 122344555555555545689999999853
No 87
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.45 E-value=0.00066 Score=77.46 Aligned_cols=102 Identities=20% Similarity=0.329 Sum_probs=65.5
Q ss_pred ccccccchHHHHHHHHHHhccCCccEEEEEcCCCChHHHHHHHHHHHhhhccC---C-CEEEEEEEcCCCCHHHHHHHHH
Q 047163 153 DFEAFDSKMEVFQDVMEALKDDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKL---F-DKVVMAEVTQNPDHHKIQDKLA 228 (658)
Q Consensus 153 ~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~---F-~~~~wv~v~~~~~~~~~~~~i~ 228 (658)
....++||+++++.+++.|......-+.++|.+|+|||++|+.+++....... + +..+|. + +... +.
T Consensus 180 ~l~~~igr~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~-~----~~~~----l~ 250 (731)
T TIGR02639 180 KIDPLIGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYS-L----DMGS----LL 250 (731)
T ss_pred CCCcccCcHHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEE-e----cHHH----Hh
Confidence 34578999999999999887655566789999999999999999998754211 1 333442 1 1111 11
Q ss_pred HhcCCCCCCCCCHHHHHHHHHHHHhcCCeEEEEEecCCc
Q 047163 229 FGLGMEFGFNENMFQRASRLCERLKKEKRLLIILDNIWI 267 (658)
Q Consensus 229 ~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~ 267 (658)
..... ....++....+.+.+...++.+|++|++..
T Consensus 251 a~~~~----~g~~e~~l~~i~~~~~~~~~~ILfiDEih~ 285 (731)
T TIGR02639 251 AGTKY----RGDFEERLKAVVSEIEKEPNAILFIDEIHT 285 (731)
T ss_pred hhccc----cchHHHHHHHHHHHHhccCCeEEEEecHHH
Confidence 11000 112334555555555444678999999863
No 88
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.45 E-value=0.00046 Score=61.02 Aligned_cols=89 Identities=22% Similarity=0.136 Sum_probs=52.0
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhcCC
Q 047163 177 NIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQNPDHHKIQDKLAFGLGMEFGFNENMFQRASRLCERLKKEK 256 (658)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k 256 (658)
..+.|+|++|+||||+++.++....... ..+++++.+........... ....... ............+....+..+
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 78 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPG--GGVIYIDGEDILEEVLDQLL-LIIVGGK-KASGSGELRLRLALALARKLK 78 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCC--CCEEEECCEEccccCHHHHH-hhhhhcc-CCCCCHHHHHHHHHHHHHhcC
Confidence 5789999999999999999998875432 24566655544332222211 1111111 112233334445555555333
Q ss_pred eEEEEEecCCccc
Q 047163 257 RLLIILDNIWIEL 269 (658)
Q Consensus 257 ~~LlVlDdv~~~~ 269 (658)
..+|++|++....
T Consensus 79 ~~viiiDei~~~~ 91 (148)
T smart00382 79 PDVLILDEITSLL 91 (148)
T ss_pred CCEEEEECCcccC
Confidence 4899999998653
No 89
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.43 E-value=0.00023 Score=62.43 Aligned_cols=69 Identities=20% Similarity=0.224 Sum_probs=42.5
Q ss_pred EEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhcCC-e
Q 047163 179 IGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQNPDHHKIQDKLAFGLGMEFGFNENMFQRASRLCERLKKEK-R 257 (658)
Q Consensus 179 i~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k-~ 257 (658)
|.|+|++|+||||+|+.+++.... ..+.++.+...+. ...+.......+.+...... +
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~-----~~~~i~~~~~~~~----------------~~~~~~~~i~~~~~~~~~~~~~ 59 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGF-----PFIEIDGSELISS----------------YAGDSEQKIRDFFKKAKKSAKP 59 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTS-----EEEEEETTHHHTS----------------STTHHHHHHHHHHHHHHHTSTS
T ss_pred CEEECcCCCCeeHHHHHHHhhccc-----ccccccccccccc----------------cccccccccccccccccccccc
Confidence 579999999999999999999752 1233443211100 02223334444444444333 7
Q ss_pred EEEEEecCCcc
Q 047163 258 LLIILDNIWIE 268 (658)
Q Consensus 258 ~LlVlDdv~~~ 268 (658)
.+|++||++..
T Consensus 60 ~vl~iDe~d~l 70 (132)
T PF00004_consen 60 CVLFIDEIDKL 70 (132)
T ss_dssp EEEEEETGGGT
T ss_pred eeeeeccchhc
Confidence 99999999743
No 90
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.43 E-value=0.0014 Score=67.11 Aligned_cols=117 Identities=19% Similarity=0.144 Sum_probs=82.4
Q ss_pred cccccccchHHHHHHHHHHhc----cCCccEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCCCCHHHHHHHH
Q 047163 152 KDFEAFDSKMEVFQDVMEALK----DDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQNPDHHKIQDKL 227 (658)
Q Consensus 152 ~~~~~~~gr~~~~~~l~~~l~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i 227 (658)
..+..++||+.++..+-+|+. ....+.+.|.|-+|.|||.+...++.+......=-.++++++-.-.....++..|
T Consensus 147 ~~p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI 226 (529)
T KOG2227|consen 147 APPGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKI 226 (529)
T ss_pred CCCCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHHH
Confidence 345678899999999988875 3456789999999999999999999887642211245677766555677788888
Q ss_pred HHhcCCCCCCCCCHHHHHHHHHHHHhcCC-eEEEEEecCCcc
Q 047163 228 AFGLGMEFGFNENMFQRASRLCERLKKEK-RLLIILDNIWIE 268 (658)
Q Consensus 228 ~~~l~~~~~~~~~~~~~~~~l~~~l~~~k-~~LlVlDdv~~~ 268 (658)
...+...........+....+.++..+.+ -+|+|+|.++..
T Consensus 227 ~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L 268 (529)
T KOG2227|consen 227 FSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHL 268 (529)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHH
Confidence 77662221112223455666777776544 689999998754
No 91
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.41 E-value=2e-05 Score=66.72 Aligned_cols=90 Identities=19% Similarity=0.223 Sum_probs=67.0
Q ss_pred CCCCCceEEEecCCCCCCccchHHhcCCCCCcEEEccCCCCCCCccccccCCCcceEEccCCCCCCc-hhhhccCCCcEE
Q 047163 497 QCPNLQLFLFFGKGYGPMQISDLFFEGTKELKDLSLTRIPFSSLPSSLGSLINLGTLCLEDCPRNDI-AILRQLKKLEIL 575 (658)
Q Consensus 497 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~l-~~~~~l~~L~~L 575 (658)
....|....+++|+ ...+|+.+..+++.+..|++++|.+..+|..+..++.|+.|+++.|++... .-+.+|.+|-+|
T Consensus 51 ~~~el~~i~ls~N~--fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~L 128 (177)
T KOG4579|consen 51 KGYELTKISLSDNG--FKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDML 128 (177)
T ss_pred CCceEEEEecccch--hhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHh
Confidence 34566667777775 556777777777788888888888888888888888888888888877665 555667777777
Q ss_pred EccCccCCccchh
Q 047163 576 RLRHSYTERLPLE 588 (658)
Q Consensus 576 ~l~~~~~~~lp~~ 588 (658)
+..+|.+.++|-.
T Consensus 129 ds~~na~~eid~d 141 (177)
T KOG4579|consen 129 DSPENARAEIDVD 141 (177)
T ss_pred cCCCCccccCcHH
Confidence 7777777777754
No 92
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.41 E-value=0.00019 Score=65.19 Aligned_cols=102 Identities=24% Similarity=0.241 Sum_probs=78.5
Q ss_pred CCCCcEEEccCCCCCCCccccccCCCcceEEccCCCCCCc-hhhhc-cCCCcEEEccCccCCccc--hhhcCCCCCcEEc
Q 047163 524 TKELKDLSLTRIPFSSLPSSLGSLINLGTLCLEDCPRNDI-AILRQ-LKKLEILRLRHSYTERLP--LEIGQLTRLRLLD 599 (658)
Q Consensus 524 ~~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~l-~~~~~-l~~L~~L~l~~~~~~~lp--~~~~~l~~L~~L~ 599 (658)
......+||++|.+..++ .+..++.|.+|.|++|.|..+ +.+.. +++|+.|.|.+|++.++. ..+..++.|++|.
T Consensus 41 ~d~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred ccccceecccccchhhcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence 356778899999988664 356788999999999999988 66655 567999999999877764 3467788999999
Q ss_pred ccCcccccccC---hhhhcCCCCCcEEEccc
Q 047163 600 LSNCWRLKVIA---PNVISKLSRLEELYMGN 627 (658)
Q Consensus 600 l~~~~~l~~~~---~~~i~~l~~L~~L~l~~ 627 (658)
+-+| ..+... ...+..+++|++|++.+
T Consensus 120 ll~N-pv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 120 LLGN-PVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred ecCC-chhcccCceeEEEEecCcceEeehhh
Confidence 9888 443322 23477899999999876
No 93
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.40 E-value=2e-05 Score=75.40 Aligned_cols=147 Identities=18% Similarity=0.168 Sum_probs=91.5
Q ss_pred CceEEeccCCCCCc-CC-CccCCCCCceEEEecCCCCCCccchHHhcCCCCCcEEEccCCCCCC-----CccccccCCCc
Q 047163 478 GPIAISLPHRDIQE-LP-ERLQCPNLQLFLFFGKGYGPMQISDLFFEGTKELKDLSLTRIPFSS-----LPSSLGSLINL 550 (658)
Q Consensus 478 ~~~~l~l~~~~~~~-~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-----lp~~i~~l~~L 550 (658)
+++.+++.++..++ +- ....-.+|+.|+++++.-....-...++.+++.|..|++++|.+.. +-..++ ++|
T Consensus 211 kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~his--e~l 288 (419)
T KOG2120|consen 211 KLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHIS--ETL 288 (419)
T ss_pred hhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhc--hhh
Confidence 45566666665543 11 1225667888888876422333334467788888888888887651 112222 467
Q ss_pred ceEEccCCC----CCCc-hhhhccCCCcEEEccCc-cCC-ccchhhcCCCCCcEEcccCcccccccChhh---hcCCCCC
Q 047163 551 GTLCLEDCP----RNDI-AILRQLKKLEILRLRHS-YTE-RLPLEIGQLTRLRLLDLSNCWRLKVIAPNV---ISKLSRL 620 (658)
Q Consensus 551 ~~L~L~~~~----~~~l-~~~~~l~~L~~L~l~~~-~~~-~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~---i~~l~~L 620 (658)
..|+|++|. .+++ .-..+.++|.+|||+.| .++ ..-..+.+++.|+||.++.|. .++|.. +...|+|
T Consensus 289 ~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY---~i~p~~~~~l~s~psl 365 (419)
T KOG2120|consen 289 TQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCY---DIIPETLLELNSKPSL 365 (419)
T ss_pred hhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhc---CCChHHeeeeccCcce
Confidence 778888874 2334 23345788888888887 232 223456788888888888884 244433 4567788
Q ss_pred cEEEcccCC
Q 047163 621 EELYMGNSF 629 (658)
Q Consensus 621 ~~L~l~~~~ 629 (658)
.+|++.+|.
T Consensus 366 ~yLdv~g~v 374 (419)
T KOG2120|consen 366 VYLDVFGCV 374 (419)
T ss_pred EEEEecccc
Confidence 888888764
No 94
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.38 E-value=0.00026 Score=64.25 Aligned_cols=99 Identities=25% Similarity=0.237 Sum_probs=53.9
Q ss_pred ceEEeccCCCCCcCCCccCCCCCceEEEecCCCCCCccchHHhcCCCCCcEEEccCCCCCCC--ccccccCCCcceEEcc
Q 047163 479 PIAISLPHRDIQELPERLQCPNLQLFLFFGKGYGPMQISDLFFEGTKELKDLSLTRIPFSSL--PSSLGSLINLGTLCLE 556 (658)
Q Consensus 479 ~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l--p~~i~~l~~L~~L~L~ 556 (658)
...+.+++|++-.++....++.|.+|.+.+|. +..+.+.+-.-+++|..|.|.+|++..+ ...+..|+.|++|.+-
T Consensus 44 ~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNr--It~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll 121 (233)
T KOG1644|consen 44 FDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNR--ITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLL 121 (233)
T ss_pred cceecccccchhhcccCCCccccceEEecCCc--ceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeec
Confidence 33455555655555555566666666666664 3344444444455566666666665543 1234455566666666
Q ss_pred CCCCCCc-----hhhhccCCCcEEEccC
Q 047163 557 DCPRNDI-----AILRQLKKLEILRLRH 579 (658)
Q Consensus 557 ~~~~~~l-----~~~~~l~~L~~L~l~~ 579 (658)
+|++++. .-+.++++|++||..+
T Consensus 122 ~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 122 GNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred CCchhcccCceeEEEEecCcceEeehhh
Confidence 6655443 3455556666665544
No 95
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=97.38 E-value=0.00061 Score=70.65 Aligned_cols=52 Identities=25% Similarity=0.310 Sum_probs=44.6
Q ss_pred cccccccccchHHHHHHHHHHhccCCccEEEEEcCCCChHHHHHHHHHHHhh
Q 047163 150 QVKDFEAFDSKMEVFQDVMEALKDDKLNIIGVYGMGGVGKTTLVKQVAKQVM 201 (658)
Q Consensus 150 ~~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (658)
.|.....++|++..++.+..++..+..+.+.++|+.|+||||+|+.+.+...
T Consensus 10 ~P~~~~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~ 61 (337)
T PRK12402 10 RPALLEDILGQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELY 61 (337)
T ss_pred CCCcHHHhcCCHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence 3455677899999999999988877767889999999999999999998765
No 96
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=97.36 E-value=0.0012 Score=67.85 Aligned_cols=53 Identities=17% Similarity=0.295 Sum_probs=45.1
Q ss_pred cccccccccchHHHHHHHHHHhccCCccEEEEEcCCCChHHHHHHHHHHHhhh
Q 047163 150 QVKDFEAFDSKMEVFQDVMEALKDDKLNIIGVYGMGGVGKTTLVKQVAKQVME 202 (658)
Q Consensus 150 ~~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 202 (658)
.|.....++|++..++.+..++..+..+.+.|+|..|+||||+|+.+.+....
T Consensus 12 rP~~~~~~~g~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~~ 64 (319)
T PRK00440 12 RPRTLDEIVGQEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELYG 64 (319)
T ss_pred CCCcHHHhcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHcC
Confidence 34556678999999999999988777777899999999999999999988643
No 97
>PF14516 AAA_35: AAA-like domain
Probab=97.34 E-value=0.0048 Score=63.38 Aligned_cols=178 Identities=15% Similarity=0.152 Sum_probs=104.0
Q ss_pred cccccccccchHHHHHHHHHHhccCCccEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCC-----CCHHHHH
Q 047163 150 QVKDFEAFDSKMEVFQDVMEALKDDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQN-----PDHHKIQ 224 (658)
Q Consensus 150 ~~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~-----~~~~~~~ 224 (658)
.+.+...+++|...-+++.+.+.+. -..+.|.|+..+|||+|...+.+..... .+ .++++++... .+..+.+
T Consensus 6 ~~~~~~~Yi~R~~~e~~~~~~i~~~-G~~~~I~apRq~GKTSll~~l~~~l~~~-~~-~~v~id~~~~~~~~~~~~~~f~ 82 (331)
T PF14516_consen 6 LPLDSPFYIERPPAEQECYQEIVQP-GSYIRIKAPRQMGKTSLLLRLLERLQQQ-GY-RCVYIDLQQLGSAIFSDLEQFL 82 (331)
T ss_pred CCCCCCcccCchHHHHHHHHHHhcC-CCEEEEECcccCCHHHHHHHHHHHHHHC-CC-EEEEEEeecCCCcccCCHHHHH
Confidence 3456677889997777788777642 2489999999999999999999888753 23 4457776642 2445444
Q ss_pred H----HHHHhcCCCCCC-------CCCHHHHHHHHHHHH-h-cCCeEEEEEecCCcccC--------------cccccCc
Q 047163 225 D----KLAFGLGMEFGF-------NENMFQRASRLCERL-K-KEKRLLIILDNIWIELE--------------FDKIGIP 277 (658)
Q Consensus 225 ~----~i~~~l~~~~~~-------~~~~~~~~~~l~~~l-~-~~k~~LlVlDdv~~~~~--------------~~~l~~~ 277 (658)
+ .|..+++.+... ..+.......+.+.+ . .+++.+|+||+++.... |..-+..
T Consensus 83 ~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~ 162 (331)
T PF14516_consen 83 RWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKN 162 (331)
T ss_pred HHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhccc
Confidence 4 444555543210 011122222333333 2 25899999999975422 1110000
Q ss_pred ccCCCc------c-----------------------ccccchhhHHhhhccC--CccHHHHHHHHHcCCchhHHHHHHHH
Q 047163 278 SGNVEK------E-----------------------RTDARSRCTIILTKTS--TIQPIADEIVEICGGLPVAVTTVANA 326 (658)
Q Consensus 278 ~~~~~~------~-----------------------~~~~~~~~~~Lf~~~~--~~~~~~~~i~~~c~glPLai~~~g~~ 326 (658)
.+.-.. + +.....+...|..++. --.+..++|....||+|.-+..++..
T Consensus 163 ~~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~~~~~~~~~l~~~tgGhP~Lv~~~~~~ 242 (331)
T PF14516_consen 163 NPIWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLEFSQEQLEQLMDWTGGHPYLVQKACYL 242 (331)
T ss_pred CcccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhccCCHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 000000 0 0000111344444433 22344899999999999999999999
Q ss_pred hccC
Q 047163 327 LKSK 330 (658)
Q Consensus 327 L~~~ 330 (658)
+...
T Consensus 243 l~~~ 246 (331)
T PF14516_consen 243 LVEE 246 (331)
T ss_pred HHHc
Confidence 8765
No 98
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.33 E-value=0.0024 Score=65.01 Aligned_cols=102 Identities=16% Similarity=0.126 Sum_probs=66.1
Q ss_pred HHHHHHhcc-CCccEEEEEcCCCChHHHHHHHHHHHhhhccCCCE-EEEEEEcCCC-CHHHHHHHHHHhcCCCCCCCCCH
Q 047163 165 QDVMEALKD-DKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDK-VVMAEVTQNP-DHHKIQDKLAFGLGMEFGFNENM 241 (658)
Q Consensus 165 ~~l~~~l~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~-~~wv~v~~~~-~~~~~~~~i~~~l~~~~~~~~~~ 241 (658)
..+++.+.. +.-..+.|+|..|+|||||++.+.+....+ +-+. ++|+-+.+.. ...++.+.+...+..........
T Consensus 121 ~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~~i~~~-~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~de~~~ 199 (380)
T PRK12608 121 MRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAVAAN-HPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFDRPPD 199 (380)
T ss_pred HhhhhheeecCCCceEEEECCCCCCHHHHHHHHHHHHHhc-CCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCCCCHH
Confidence 346776652 333477999999999999999999987643 3343 5787787764 66778888877665433211111
Q ss_pred H--H---HHHHHHHHH-hcCCeEEEEEecCCc
Q 047163 242 F--Q---RASRLCERL-KKEKRLLIILDNIWI 267 (658)
Q Consensus 242 ~--~---~~~~l~~~l-~~~k~~LlVlDdv~~ 267 (658)
. . ....+.+++ ..+++++||+|++..
T Consensus 200 ~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsltr 231 (380)
T PRK12608 200 EHIRVAELVLERAKRLVEQGKDVVILLDSLTR 231 (380)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEEeCcHH
Confidence 1 1 111222233 358999999999864
No 99
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=97.32 E-value=0.0022 Score=65.51 Aligned_cols=59 Identities=14% Similarity=0.325 Sum_probs=45.8
Q ss_pred ccccchHHHHHHHHHHhccCCc-cEEEEEcCCCChHHHHHHHHHHHhh----hccCCCEEEEEE
Q 047163 155 EAFDSKMEVFQDVMEALKDDKL-NIIGVYGMGGVGKTTLVKQVAKQVM----EDKLFDKVVMAE 213 (658)
Q Consensus 155 ~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~----~~~~F~~~~wv~ 213 (658)
..++|.+..++.+..++..+.. ..+.++|+.|+||||+|+.++...- ...|+|...|..
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~ 67 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKP 67 (313)
T ss_pred hhccCcHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEecc
Confidence 4578999999999999876665 4568999999999999999998752 235667655644
No 100
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=97.32 E-value=0.00078 Score=65.37 Aligned_cols=54 Identities=13% Similarity=0.228 Sum_probs=40.0
Q ss_pred hHHHHHHHHHHhccCCccEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEc
Q 047163 160 KMEVFQDVMEALKDDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVT 215 (658)
Q Consensus 160 r~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~ 215 (658)
.+..++.+..++.....+.+.|+|..|+|||+||+.+++..... ....++++++
T Consensus 22 ~~~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~~~--~~~~~~i~~~ 75 (226)
T TIGR03420 22 NAELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAEER--GKSAIYLPLA 75 (226)
T ss_pred cHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHHhc--CCcEEEEeHH
Confidence 45567777776655566789999999999999999999887532 3345566654
No 101
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.31 E-value=0.00059 Score=63.19 Aligned_cols=104 Identities=15% Similarity=0.196 Sum_probs=67.0
Q ss_pred cccccccccchHHHHHHHHHHhccCCccEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCCCCHHHHHHHHHH
Q 047163 150 QVKDFEAFDSKMEVFQDVMEALKDDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQNPDHHKIQDKLAF 229 (658)
Q Consensus 150 ~~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~ 229 (658)
.|....++||-++.++.+--...+++.+-+.|.||+|+||||-+..+++..-....-+.+.=.+.|+...+.-+-..|=.
T Consensus 22 rP~~l~dIVGNe~tv~rl~via~~gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASdeRGIDvVRn~IK~ 101 (333)
T KOG0991|consen 22 RPSVLQDIVGNEDTVERLSVIAKEGNMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDERGIDVVRNKIKM 101 (333)
T ss_pred CchHHHHhhCCHHHHHHHHHHHHcCCCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCccccccHHHHHHHHH
Confidence 34456678999999888776667899999999999999999999999888754333344444455544433322222210
Q ss_pred hcCCCCCCCCCHHHHHHHHHHHHhcCCeEEEEEecCCcc
Q 047163 230 GLGMEFGFNENMFQRASRLCERLKKEKRLLIILDNIWIE 268 (658)
Q Consensus 230 ~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~ 268 (658)
..... -.+..++.-.||||..++.
T Consensus 102 FAQ~k---------------v~lp~grhKIiILDEADSM 125 (333)
T KOG0991|consen 102 FAQKK---------------VTLPPGRHKIIILDEADSM 125 (333)
T ss_pred HHHhh---------------ccCCCCceeEEEeeccchh
Confidence 00000 0011366778999999875
No 102
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.29 E-value=0.00093 Score=75.00 Aligned_cols=51 Identities=29% Similarity=0.404 Sum_probs=43.5
Q ss_pred ccccccccchHHHHHHHHHHhccCCccE-EEEEcCCCChHHHHHHHHHHHhh
Q 047163 151 VKDFEAFDSKMEVFQDVMEALKDDKLNI-IGVYGMGGVGKTTLVKQVAKQVM 201 (658)
Q Consensus 151 ~~~~~~~~gr~~~~~~l~~~l~~~~~~v-i~I~G~gGiGKTtLa~~v~~~~~ 201 (658)
|.....++|.+..++.|.+++..+++.. +.++|+.|+||||+|+.+++...
T Consensus 12 P~tFddIIGQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Ln 63 (944)
T PRK14949 12 PATFEQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLN 63 (944)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhcc
Confidence 3556778999999999999888777665 47999999999999999998864
No 103
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=97.28 E-value=0.00056 Score=76.80 Aligned_cols=52 Identities=29% Similarity=0.475 Sum_probs=41.6
Q ss_pred cccccccccchHHHHH---HHHHHhccCCccEEEEEcCCCChHHHHHHHHHHHhh
Q 047163 150 QVKDFEAFDSKMEVFQ---DVMEALKDDKLNIIGVYGMGGVGKTTLVKQVAKQVM 201 (658)
Q Consensus 150 ~~~~~~~~~gr~~~~~---~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (658)
.|....+|+|++..+. .+.+.+..+....+.++|++|+||||+|+.+++...
T Consensus 23 RP~tldd~vGQe~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~~ 77 (725)
T PRK13341 23 RPRTLEEFVGQDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHTR 77 (725)
T ss_pred CCCcHHHhcCcHHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence 3556677899988774 455666667777889999999999999999998764
No 104
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.27 E-value=0.00011 Score=70.37 Aligned_cols=84 Identities=21% Similarity=0.155 Sum_probs=40.8
Q ss_pred CCCCCceEEEecCCCCCCccchHHhcCCCCCcEEEccCCCCCCCcccc-ccCCCcceEEccCCCCCCc---hhhhccCCC
Q 047163 497 QCPNLQLFLFFGKGYGPMQISDLFFEGTKELKDLSLTRIPFSSLPSSL-GSLINLGTLCLEDCPRNDI---AILRQLKKL 572 (658)
Q Consensus 497 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~i-~~l~~L~~L~L~~~~~~~l---~~~~~l~~L 572 (658)
.++.++.+++.+|.++...--..++.+++.|++|+++.|++.+.-.++ -.+.+|+.|-|.++.+..- ..+..++.+
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 345555566665543332222334556666666666666555322222 2344566666655543321 344445555
Q ss_pred cEEEccCc
Q 047163 573 EILRLRHS 580 (658)
Q Consensus 573 ~~L~l~~~ 580 (658)
+.|.++.|
T Consensus 149 telHmS~N 156 (418)
T KOG2982|consen 149 TELHMSDN 156 (418)
T ss_pred hhhhhccc
Confidence 55555444
No 105
>COG3899 Predicted ATPase [General function prediction only]
Probab=97.25 E-value=0.017 Score=66.73 Aligned_cols=89 Identities=12% Similarity=0.215 Sum_probs=61.0
Q ss_pred CccHHHHHHHHHcCCchhHHHHHHHHhccC-------ChHHHHHHHHHHhcCCCCCCCchhHHHHHHHHhhHhcCCchhH
Q 047163 301 TIQPIADEIVEICGGLPVAVTTVANALKSK-------SLDIWKDALNQLRSSNPREIDGMDKKVYTSIELSYNLLASKEA 373 (658)
Q Consensus 301 ~~~~~~~~i~~~c~glPLai~~~g~~L~~~-------~~~~w~~~l~~l~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~ 373 (658)
...+..+.|.++-.|.|+-+..+-..+... +...|..-..++.. .+..+.+...+..-.+.||.. .
T Consensus 238 ~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~------~~~~~~vv~~l~~rl~kL~~~-t 310 (849)
T COG3899 238 LPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLGI------LATTDAVVEFLAARLQKLPGT-T 310 (849)
T ss_pred ccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcCC------chhhHHHHHHHHHHHhcCCHH-H
Confidence 556789999999999999999888877643 33445433333211 122233566688889999988 8
Q ss_pred HHHHHHhcccccCCcccHHHHHHHH
Q 047163 374 KSLFRLCGLYNEGHAIQVASILRYG 398 (658)
Q Consensus 374 k~~fl~~~~fp~~~~i~~~~li~~w 398 (658)
+..+-..|++... |+...|...+
T Consensus 311 ~~Vl~~AA~iG~~--F~l~~La~l~ 333 (849)
T COG3899 311 REVLKAAACIGNR--FDLDTLAALA 333 (849)
T ss_pred HHHHHHHHHhCcc--CCHHHHHHHH
Confidence 8888888888754 5666665543
No 106
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.24 E-value=0.002 Score=67.22 Aligned_cols=51 Identities=22% Similarity=0.321 Sum_probs=42.4
Q ss_pred ccccccccchHHHHHHHHHHhccCCcc-EEEEEcCCCChHHHHHHHHHHHhh
Q 047163 151 VKDFEAFDSKMEVFQDVMEALKDDKLN-IIGVYGMGGVGKTTLVKQVAKQVM 201 (658)
Q Consensus 151 ~~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~ 201 (658)
|....+++|.+..++.+...+..+++. .+.++|+.|+||||+|+.+.+...
T Consensus 12 P~~~~~iiGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~ 63 (363)
T PRK14961 12 PQYFRDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLN 63 (363)
T ss_pred CCchhhccChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhc
Confidence 345667899999999998888766654 568999999999999999998764
No 107
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.23 E-value=0.0012 Score=75.97 Aligned_cols=51 Identities=20% Similarity=0.298 Sum_probs=43.7
Q ss_pred cccccccchHHHHHHHHHHhccCCccEEEEEcCCCChHHHHHHHHHHHhhh
Q 047163 152 KDFEAFDSKMEVFQDVMEALKDDKLNIIGVYGMGGVGKTTLVKQVAKQVME 202 (658)
Q Consensus 152 ~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 202 (658)
.....++||+.++..+++.|......-+.++|.+|+||||+|+.+++....
T Consensus 184 ~~ld~~iGr~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~~ 234 (852)
T TIGR03345 184 GKIDPVLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIAA 234 (852)
T ss_pred CCCCcccCCHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHhh
Confidence 345678999999999999887666666789999999999999999998753
No 108
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.22 E-value=0.0016 Score=70.56 Aligned_cols=51 Identities=27% Similarity=0.322 Sum_probs=43.5
Q ss_pred ccccccccchHHHHHHHHHHhccCCccE-EEEEcCCCChHHHHHHHHHHHhh
Q 047163 151 VKDFEAFDSKMEVFQDVMEALKDDKLNI-IGVYGMGGVGKTTLVKQVAKQVM 201 (658)
Q Consensus 151 ~~~~~~~~gr~~~~~~l~~~l~~~~~~v-i~I~G~gGiGKTtLa~~v~~~~~ 201 (658)
|....+++|.+..++.|..++..+.+.- +.++|+.|+||||+|+.+.+...
T Consensus 12 P~~f~divGq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~ 63 (509)
T PRK14958 12 PRCFQEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLN 63 (509)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhc
Confidence 4556778999999999999998766654 68999999999999999998764
No 109
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.22 E-value=0.0017 Score=69.59 Aligned_cols=52 Identities=27% Similarity=0.342 Sum_probs=42.6
Q ss_pred cccccccccchHHHHHHHHHHhccCCcc-EEEEEcCCCChHHHHHHHHHHHhh
Q 047163 150 QVKDFEAFDSKMEVFQDVMEALKDDKLN-IIGVYGMGGVGKTTLVKQVAKQVM 201 (658)
Q Consensus 150 ~~~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~ 201 (658)
.|....+++|.+.....|...+..+.+. .+.++|++|+||||+|+.+++...
T Consensus 9 RP~~~~divGq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~ 61 (472)
T PRK14962 9 RPKTFSEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLN 61 (472)
T ss_pred CCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3456677899999888888877766664 578999999999999999988754
No 110
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.19 E-value=0.0011 Score=63.45 Aligned_cols=36 Identities=28% Similarity=0.403 Sum_probs=29.5
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEE
Q 047163 177 NIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEV 214 (658)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v 214 (658)
-.++|+|..|+||||+.+.+...... .|.++++++-
T Consensus 14 fr~viIG~sGSGKT~li~~lL~~~~~--~f~~I~l~t~ 49 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLYYLRH--KFDHIFLITP 49 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhhcc--cCCEEEEEec
Confidence 36789999999999999999987654 4888877754
No 111
>PHA00729 NTP-binding motif containing protein
Probab=97.19 E-value=0.002 Score=61.10 Aligned_cols=36 Identities=28% Similarity=0.487 Sum_probs=29.0
Q ss_pred HHHHHhccCCccEEEEEcCCCChHHHHHHHHHHHhh
Q 047163 166 DVMEALKDDKLNIIGVYGMGGVGKTTLVKQVAKQVM 201 (658)
Q Consensus 166 ~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (658)
.+++.+...+...|.|.|.+|+||||||..+.+...
T Consensus 7 ~~~~~l~~~~f~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 7 KIVSAYNNNGFVSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred HHHHHHhcCCeEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 345555556667899999999999999999998753
No 112
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.19 E-value=0.0014 Score=75.77 Aligned_cols=51 Identities=22% Similarity=0.355 Sum_probs=43.3
Q ss_pred cccccccchHHHHHHHHHHhccCCccEEEEEcCCCChHHHHHHHHHHHhhh
Q 047163 152 KDFEAFDSKMEVFQDVMEALKDDKLNIIGVYGMGGVGKTTLVKQVAKQVME 202 (658)
Q Consensus 152 ~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 202 (658)
.....++||+.++..+++.|......-+.++|.+|+|||++|+.+......
T Consensus 175 ~~l~~vigr~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~ 225 (857)
T PRK10865 175 GKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIIN 225 (857)
T ss_pred CCCCcCCCCHHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHhhc
Confidence 345668999999999999887666667779999999999999999998753
No 113
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.18 E-value=0.0019 Score=70.01 Aligned_cols=51 Identities=27% Similarity=0.384 Sum_probs=42.2
Q ss_pred ccccccccchHHHHHHHHHHhccCCcc-EEEEEcCCCChHHHHHHHHHHHhh
Q 047163 151 VKDFEAFDSKMEVFQDVMEALKDDKLN-IIGVYGMGGVGKTTLVKQVAKQVM 201 (658)
Q Consensus 151 ~~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~ 201 (658)
|.....++|.+..++.|...+..++.. .+.++|+.|+||||+|+.+++...
T Consensus 12 P~~f~diiGq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~ 63 (546)
T PRK14957 12 PQSFAEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLN 63 (546)
T ss_pred cCcHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 345667899999999999888766554 477999999999999999998653
No 114
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.17 E-value=0.0014 Score=68.79 Aligned_cols=94 Identities=23% Similarity=0.301 Sum_probs=59.0
Q ss_pred ccccccchHHHHHHHHHHhc----c---------CCccEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCCCC
Q 047163 153 DFEAFDSKMEVFQDVMEALK----D---------DKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQNPD 219 (658)
Q Consensus 153 ~~~~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~ 219 (658)
....+.|+++.++++.+.+. . ...+-|.++|++|+|||++|+.+++..... |+.++.
T Consensus 129 ~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~-------~i~v~~--- 198 (389)
T PRK03992 129 TYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNAT-------FIRVVG--- 198 (389)
T ss_pred CHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCC-------EEEeeh---
Confidence 34567899999988887653 1 234568999999999999999999876421 223221
Q ss_pred HHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhcCCeEEEEEecCCc
Q 047163 220 HHKIQDKLAFGLGMEFGFNENMFQRASRLCERLKKEKRLLIILDNIWI 267 (658)
Q Consensus 220 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~ 267 (658)
..+... . ..........+++........+|+|||++.
T Consensus 199 -~~l~~~----~------~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~ 235 (389)
T PRK03992 199 -SELVQK----F------IGEGARLVRELFELAREKAPSIIFIDEIDA 235 (389)
T ss_pred -HHHhHh----h------ccchHHHHHHHHHHHHhcCCeEEEEechhh
Confidence 111111 0 011123344455555445678999999974
No 115
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.13 E-value=0.002 Score=69.99 Aligned_cols=51 Identities=31% Similarity=0.453 Sum_probs=43.4
Q ss_pred ccccccccchHHHHHHHHHHhccCCcc-EEEEEcCCCChHHHHHHHHHHHhh
Q 047163 151 VKDFEAFDSKMEVFQDVMEALKDDKLN-IIGVYGMGGVGKTTLVKQVAKQVM 201 (658)
Q Consensus 151 ~~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~ 201 (658)
|....+++|.+..++.|.+++..+++. .+.++|..|+||||+|+.+.+...
T Consensus 12 PqtFddVIGQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLn 63 (700)
T PRK12323 12 PRDFTTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLN 63 (700)
T ss_pred CCcHHHHcCcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhc
Confidence 456677899999999999999877665 458999999999999999998764
No 116
>PRK06893 DNA replication initiation factor; Validated
Probab=97.13 E-value=0.0018 Score=62.69 Aligned_cols=39 Identities=15% Similarity=0.302 Sum_probs=30.0
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEc
Q 047163 175 KLNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVT 215 (658)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~ 215 (658)
..+.+.|+|++|+|||+|++.+++....+ ...+.|+++.
T Consensus 38 ~~~~l~l~G~~G~GKThL~~ai~~~~~~~--~~~~~y~~~~ 76 (229)
T PRK06893 38 QQPFFYIWGGKSSGKSHLLKAVSNHYLLN--QRTAIYIPLS 76 (229)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCCeEEeeHH
Confidence 34578999999999999999999987643 3345666653
No 117
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.11 E-value=0.0022 Score=69.86 Aligned_cols=51 Identities=27% Similarity=0.382 Sum_probs=43.3
Q ss_pred ccccccccchHHHHHHHHHHhccCCc-cEEEEEcCCCChHHHHHHHHHHHhh
Q 047163 151 VKDFEAFDSKMEVFQDVMEALKDDKL-NIIGVYGMGGVGKTTLVKQVAKQVM 201 (658)
Q Consensus 151 ~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (658)
|.....++|.+...+.|..++..++. ..+.++|+.|+||||+|+.+++...
T Consensus 11 PktFddVIGQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~Ln 62 (702)
T PRK14960 11 PRNFNELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLN 62 (702)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45677889999999999999886664 4668999999999999999988764
No 118
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=97.11 E-value=0.0014 Score=68.48 Aligned_cols=50 Identities=28% Similarity=0.403 Sum_probs=39.7
Q ss_pred cccccccchHHHHHHHHHHhc----c---------CCccEEEEEcCCCChHHHHHHHHHHHhh
Q 047163 152 KDFEAFDSKMEVFQDVMEALK----D---------DKLNIIGVYGMGGVGKTTLVKQVAKQVM 201 (658)
Q Consensus 152 ~~~~~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (658)
....++.|+++.++.|.+.+. . ...+-+.++|++|+|||++|+.+++...
T Consensus 119 ~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~ 181 (364)
T TIGR01242 119 VSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETN 181 (364)
T ss_pred CCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCC
Confidence 345568899999999887763 1 1245689999999999999999998765
No 119
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.08 E-value=0.0021 Score=65.94 Aligned_cols=51 Identities=18% Similarity=0.204 Sum_probs=42.4
Q ss_pred cccccccccchHHHHHHHHHHhccCCc-cEEEEEcCCCChHHHHHHHHHHHh
Q 047163 150 QVKDFEAFDSKMEVFQDVMEALKDDKL-NIIGVYGMGGVGKTTLVKQVAKQV 200 (658)
Q Consensus 150 ~~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~ 200 (658)
.|....+++|.+...+.+..++..+.. .++.++|++|+||||+|+.+++..
T Consensus 16 rP~~~~~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~ 67 (316)
T PHA02544 16 RPSTIDECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEV 67 (316)
T ss_pred CCCcHHHhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHh
Confidence 345667789999999999999876654 466669999999999999998875
No 120
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.08 E-value=0.00037 Score=75.16 Aligned_cols=51 Identities=27% Similarity=0.324 Sum_probs=42.5
Q ss_pred ccccccccchHHHHHHHHHHhccCCcc-EEEEEcCCCChHHHHHHHHHHHhh
Q 047163 151 VKDFEAFDSKMEVFQDVMEALKDDKLN-IIGVYGMGGVGKTTLVKQVAKQVM 201 (658)
Q Consensus 151 ~~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~ 201 (658)
|....+++|.+..++.|..++..+... .+.++|++|+||||+|+.+++...
T Consensus 10 P~~~~dvvGq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~ 61 (504)
T PRK14963 10 PITFDEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVN 61 (504)
T ss_pred CCCHHHhcChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 345667899999999998888766654 459999999999999999998875
No 121
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.07 E-value=0.0016 Score=68.65 Aligned_cols=52 Identities=27% Similarity=0.342 Sum_probs=43.9
Q ss_pred cccccccccchHHHHHHHHHHhccCCcc-EEEEEcCCCChHHHHHHHHHHHhh
Q 047163 150 QVKDFEAFDSKMEVFQDVMEALKDDKLN-IIGVYGMGGVGKTTLVKQVAKQVM 201 (658)
Q Consensus 150 ~~~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~ 201 (658)
.|.....++|.+..+..|..++..+.+. .+.++|+.|+||||+|+.+++...
T Consensus 13 RP~~f~dvVGQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Ln 65 (484)
T PRK14956 13 RPQFFRDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLN 65 (484)
T ss_pred CCCCHHHHhChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3456777899999999999888877765 579999999999999999998764
No 122
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.06 E-value=0.00025 Score=67.25 Aligned_cols=106 Identities=25% Similarity=0.282 Sum_probs=68.1
Q ss_pred hcCCCCCcEEEccCCCCCCCccccccCCCcceEEccCCCCC---Cc-hhhhccCCCcEEEccCccCCccc--hhhcCCCC
Q 047163 521 FEGTKELKDLSLTRIPFSSLPSSLGSLINLGTLCLEDCPRN---DI-AILRQLKKLEILRLRHSYTERLP--LEIGQLTR 594 (658)
Q Consensus 521 ~~~~~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~---~l-~~~~~l~~L~~L~l~~~~~~~lp--~~~~~l~~ 594 (658)
...+..|..|++.++.++++- .+..|++|+.|.++.|... .+ ....++++|++|++++|.+..+. ..+..+.+
T Consensus 39 ~d~~~~le~ls~~n~gltt~~-~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~n 117 (260)
T KOG2739|consen 39 TDEFVELELLSVINVGLTTLT-NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELEN 117 (260)
T ss_pred cccccchhhhhhhccceeecc-cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcc
Confidence 445667777777777766542 3446788999999988432 23 34445589999999998665431 22567788
Q ss_pred CcEEcccCccccc--ccChhhhcCCCCCcEEEccc
Q 047163 595 LRLLDLSNCWRLK--VIAPNVISKLSRLEELYMGN 627 (658)
Q Consensus 595 L~~L~l~~~~~l~--~~~~~~i~~l~~L~~L~l~~ 627 (658)
|..|++.+|+... .--...+.-+++|..|+-..
T Consensus 118 L~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~d 152 (260)
T KOG2739|consen 118 LKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCD 152 (260)
T ss_pred hhhhhcccCCccccccHHHHHHHHhhhhccccccc
Confidence 8888888883322 12223355677777776443
No 123
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.05 E-value=0.0033 Score=59.86 Aligned_cols=56 Identities=18% Similarity=0.259 Sum_probs=43.7
Q ss_pred cCcccccccccchHHHHHHHHHHhc----cCCccEEEEEcCCCChHHHHHHHHHHHhhhc
Q 047163 148 HMQVKDFEAFDSKMEVFQDVMEALK----DDKLNIIGVYGMGGVGKTTLVKQVAKQVMED 203 (658)
Q Consensus 148 ~~~~~~~~~~~gr~~~~~~l~~~l~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 203 (658)
...+.....++|-+...+.|++-.. .....-+.+||..|.|||++++.+.+....+
T Consensus 20 ~~~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~ 79 (249)
T PF05673_consen 20 HPDPIRLDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQ 79 (249)
T ss_pred CCCCCCHHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhc
Confidence 3445667778999888888776433 4455678899999999999999999988764
No 124
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.02 E-value=0.0042 Score=66.33 Aligned_cols=50 Identities=22% Similarity=0.280 Sum_probs=42.0
Q ss_pred ccccccccchHHHHHHHHHHhccCCcc-EEEEEcCCCChHHHHHHHHHHHh
Q 047163 151 VKDFEAFDSKMEVFQDVMEALKDDKLN-IIGVYGMGGVGKTTLVKQVAKQV 200 (658)
Q Consensus 151 ~~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~ 200 (658)
|....+++|.+..++.|...+..+.+. .+.++|+.|+||||+|+.++...
T Consensus 9 P~~f~dliGQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~L 59 (491)
T PRK14964 9 PSSFKDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCL 59 (491)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHH
Confidence 355677899999999888888766665 68899999999999999998754
No 125
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=97.01 E-value=0.0042 Score=66.86 Aligned_cols=52 Identities=25% Similarity=0.355 Sum_probs=42.8
Q ss_pred cccccccccchHHHHHHHHHHhccCCc-cEEEEEcCCCChHHHHHHHHHHHhh
Q 047163 150 QVKDFEAFDSKMEVFQDVMEALKDDKL-NIIGVYGMGGVGKTTLVKQVAKQVM 201 (658)
Q Consensus 150 ~~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (658)
.|....+++|.+..+..|...+..+.. ..+.++|+.|+||||+|+.+++...
T Consensus 16 RP~~f~dliGq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Ln 68 (507)
T PRK06645 16 RPSNFAELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVN 68 (507)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence 345567789999999988887765554 5788999999999999999998764
No 126
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.00 E-value=0.0043 Score=67.69 Aligned_cols=50 Identities=32% Similarity=0.449 Sum_probs=42.2
Q ss_pred cccccccchHHHHHHHHHHhccCCccE-EEEEcCCCChHHHHHHHHHHHhh
Q 047163 152 KDFEAFDSKMEVFQDVMEALKDDKLNI-IGVYGMGGVGKTTLVKQVAKQVM 201 (658)
Q Consensus 152 ~~~~~~~gr~~~~~~l~~~l~~~~~~v-i~I~G~gGiGKTtLa~~v~~~~~ 201 (658)
.....++|.+..++.|..++..+.+.. +.++|+.|+||||+|+.+.....
T Consensus 13 ~~f~divGq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~ 63 (527)
T PRK14969 13 KSFSELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLN 63 (527)
T ss_pred CcHHHhcCcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 456678999999999999888766654 57999999999999999998763
No 127
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.99 E-value=0.027 Score=60.16 Aligned_cols=88 Identities=19% Similarity=0.244 Sum_probs=47.7
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCC-CCHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhc
Q 047163 176 LNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQN-PDHHKIQDKLAFGLGMEFGFNENMFQRASRLCERLKK 254 (658)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 254 (658)
..+|+|+|.+|+||||++..+......+.....+..++.... .....-++.....++.......+.. ......+.+.
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~-~L~~aL~~l~- 427 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAE-SLLDLLERLR- 427 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHH-HHHHHHHHhc-
Confidence 469999999999999999998877654322234555554321 1122222333334443332112222 2233334443
Q ss_pred CCeEEEEEecCC
Q 047163 255 EKRLLIILDNIW 266 (658)
Q Consensus 255 ~k~~LlVlDdv~ 266 (658)
+.-+|++|..-
T Consensus 428 -~~DLVLIDTaG 438 (559)
T PRK12727 428 -DYKLVLIDTAG 438 (559)
T ss_pred -cCCEEEecCCC
Confidence 35688898874
No 128
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.99 E-value=0.0033 Score=72.99 Aligned_cols=50 Identities=22% Similarity=0.354 Sum_probs=42.5
Q ss_pred ccccccchHHHHHHHHHHhccCCccEEEEEcCCCChHHHHHHHHHHHhhh
Q 047163 153 DFEAFDSKMEVFQDVMEALKDDKLNIIGVYGMGGVGKTTLVKQVAKQVME 202 (658)
Q Consensus 153 ~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 202 (658)
....++||+.++..++..|......-+.++|.+|+|||++|+.+..+...
T Consensus 171 ~~~~~igr~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~ 220 (852)
T TIGR03346 171 KLDPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVN 220 (852)
T ss_pred CCCcCCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhc
Confidence 34568999999999999887655566779999999999999999988754
No 129
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=96.98 E-value=0.0033 Score=67.44 Aligned_cols=51 Identities=20% Similarity=0.326 Sum_probs=38.9
Q ss_pred cccccccchHHHHHHHHHHhc----c---------CCccEEEEEcCCCChHHHHHHHHHHHhhh
Q 047163 152 KDFEAFDSKMEVFQDVMEALK----D---------DKLNIIGVYGMGGVGKTTLVKQVAKQVME 202 (658)
Q Consensus 152 ~~~~~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 202 (658)
.....+.|.+..++.+.+.+. . ...+-+.++|++|+|||++|+.+++....
T Consensus 179 v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~ 242 (512)
T TIGR03689 179 VTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQ 242 (512)
T ss_pred CCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhcc
Confidence 344567789988888877653 1 13456899999999999999999998753
No 130
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=96.95 E-value=0.0041 Score=68.41 Aligned_cols=51 Identities=29% Similarity=0.434 Sum_probs=43.2
Q ss_pred ccccccccchHHHHHHHHHHhccCCcc-EEEEEcCCCChHHHHHHHHHHHhh
Q 047163 151 VKDFEAFDSKMEVFQDVMEALKDDKLN-IIGVYGMGGVGKTTLVKQVAKQVM 201 (658)
Q Consensus 151 ~~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~ 201 (658)
|.....++|.+..++.|..++..+++. .+.++|..|+||||+|+.+.+...
T Consensus 12 P~tFddIIGQe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~Ln 63 (709)
T PRK08691 12 PKTFADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLN 63 (709)
T ss_pred CCCHHHHcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhc
Confidence 456678999999999999998866654 579999999999999999988753
No 131
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.95 E-value=0.0059 Score=57.35 Aligned_cols=89 Identities=22% Similarity=0.237 Sum_probs=55.9
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCC-CCHHHHHHHHHHhcCCCCC---CCCCHHHHHHHHHHH
Q 047163 176 LNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQN-PDHHKIQDKLAFGLGMEFG---FNENMFQRASRLCER 251 (658)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~-~~~~~~~~~i~~~l~~~~~---~~~~~~~~~~~l~~~ 251 (658)
++||.++|+.|+||||.+..++.....+ -..+..++.... ....+-++..++.++.+.. ...+..+......+.
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~--~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~ 78 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLK--GKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEK 78 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHT--T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhc--cccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHH
Confidence 4689999999999999888888887654 345667776432 2445556777888876632 122344444444444
Q ss_pred HhcCCeEEEEEecCC
Q 047163 252 LKKEKRLLIILDNIW 266 (658)
Q Consensus 252 l~~~k~~LlVlDdv~ 266 (658)
+..++.=+|++|-.-
T Consensus 79 ~~~~~~D~vlIDT~G 93 (196)
T PF00448_consen 79 FRKKGYDLVLIDTAG 93 (196)
T ss_dssp HHHTTSSEEEEEE-S
T ss_pred HhhcCCCEEEEecCC
Confidence 443344588888663
No 132
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.94 E-value=0.075 Score=51.64 Aligned_cols=88 Identities=15% Similarity=0.240 Sum_probs=51.9
Q ss_pred HHHHHHHHhc--cCCccEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCCCCC
Q 047163 163 VFQDVMEALK--DDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQNPDHHKIQDKLAFGLGMEFGFNEN 240 (658)
Q Consensus 163 ~~~~l~~~l~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~ 240 (658)
.+..+.++.. ......+.++|.+|+|||+||..+++..... -..+++++ ..++...+-...... ...
T Consensus 84 al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~--g~~v~~it------~~~l~~~l~~~~~~~---~~~ 152 (244)
T PRK07952 84 ALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLR--GKSVLIIT------VADIMSAMKDTFSNS---ETS 152 (244)
T ss_pred HHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEE------HHHHHHHHHHHHhhc---ccc
Confidence 4444444443 2234578999999999999999999987643 23455554 344554444333211 111
Q ss_pred HHHHHHHHHHHHhcCCeEEEEEecCCc
Q 047163 241 MFQRASRLCERLKKEKRLLIILDNIWI 267 (658)
Q Consensus 241 ~~~~~~~l~~~l~~~k~~LlVlDdv~~ 267 (658)
...+.+.+. +.=+||+||+..
T Consensus 153 ----~~~~l~~l~--~~dlLvIDDig~ 173 (244)
T PRK07952 153 ----EEQLLNDLS--NVDLLVIDEIGV 173 (244)
T ss_pred ----HHHHHHHhc--cCCEEEEeCCCC
Confidence 123444454 345888999964
No 133
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=96.94 E-value=0.0013 Score=63.11 Aligned_cols=53 Identities=25% Similarity=0.392 Sum_probs=44.2
Q ss_pred ccccccccchHHHHHHHHHHhc-----cCCccEEEEEcCCCChHHHHHHHHHHHhhhc
Q 047163 151 VKDFEAFDSKMEVFQDVMEALK-----DDKLNIIGVYGMGGVGKTTLVKQVAKQVMED 203 (658)
Q Consensus 151 ~~~~~~~~gr~~~~~~l~~~l~-----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 203 (658)
|....+|+|.++.++++-=++. ...+-.+.++|++|.||||||..+++...++
T Consensus 22 P~~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn 79 (332)
T COG2255 22 PKTLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGVN 79 (332)
T ss_pred cccHHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCC
Confidence 4567789999999888766554 4556789999999999999999999998764
No 134
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=96.94 E-value=0.0043 Score=67.47 Aligned_cols=51 Identities=24% Similarity=0.327 Sum_probs=43.0
Q ss_pred ccccccccchHHHHHHHHHHhccCCcc-EEEEEcCCCChHHHHHHHHHHHhh
Q 047163 151 VKDFEAFDSKMEVFQDVMEALKDDKLN-IIGVYGMGGVGKTTLVKQVAKQVM 201 (658)
Q Consensus 151 ~~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~ 201 (658)
|.....++|++..++.+...+..+... .+.++|+.|+||||+|+.+++...
T Consensus 12 P~~F~dIIGQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~ 63 (605)
T PRK05896 12 PHNFKQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAIN 63 (605)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence 456677899999999999988765544 688999999999999999998864
No 135
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.93 E-value=0.00081 Score=57.97 Aligned_cols=23 Identities=39% Similarity=0.631 Sum_probs=21.7
Q ss_pred EEEEEcCCCChHHHHHHHHHHHh
Q 047163 178 IIGVYGMGGVGKTTLVKQVAKQV 200 (658)
Q Consensus 178 vi~I~G~gGiGKTtLa~~v~~~~ 200 (658)
+|+|.|++|+||||+|+.+.+..
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999876
No 136
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.92 E-value=0.00019 Score=68.83 Aligned_cols=170 Identities=16% Similarity=0.153 Sum_probs=89.1
Q ss_pred CceEEeccCCCCCcCCCcc----CCCCCceEEEecCCCCCC--ccchHHhcCCCCCcEEEccCCCCC--CCccccccCCC
Q 047163 478 GPIAISLPHRDIQELPERL----QCPNLQLFLFFGKGYGPM--QISDLFFEGTKELKDLSLTRIPFS--SLPSSLGSLIN 549 (658)
Q Consensus 478 ~~~~l~l~~~~~~~~~~~~----~~~~L~~L~l~~~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~--~lp~~i~~l~~ 549 (658)
+++.+.+.+|.+.+..... .+|.|++|+++.|..... .+| ...++|++|-|.|+.+. ..-..+..++.
T Consensus 72 ~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp----~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~ 147 (418)
T KOG2982|consen 72 DVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP----LPLKNLRVLVLNGTGLSWTQSTSSLDDLPK 147 (418)
T ss_pred hhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc----ccccceEEEEEcCCCCChhhhhhhhhcchh
Confidence 5666666666665433322 677777777777763221 122 24567777777776654 33344555666
Q ss_pred cceEEccCCCCCCc----h-----------------------hhh----ccCCCcEEEccCccCCccc--hhhcCCCCCc
Q 047163 550 LGTLCLEDCPRNDI----A-----------------------ILR----QLKKLEILRLRHSYTERLP--LEIGQLTRLR 596 (658)
Q Consensus 550 L~~L~L~~~~~~~l----~-----------------------~~~----~l~~L~~L~l~~~~~~~lp--~~~~~l~~L~ 596 (658)
++.|+++.|+...+ . ..+ -++|+..+-+..|.+++.. ++...++.+-
T Consensus 148 vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~ 227 (418)
T KOG2982|consen 148 VTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLS 227 (418)
T ss_pred hhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcch
Confidence 66666665532111 1 111 1244555555555444442 3344556666
Q ss_pred EEcccCcccccccC-hhhhcCCCCCcEEEcccCCCCcccccCCCcc--chhhcCCCCccc
Q 047163 597 LLDLSNCWRLKVIA-PNVISKLSRLEELYMGNSFPKWDKVEGGSNA--SLAELKGLSKLD 653 (658)
Q Consensus 597 ~L~l~~~~~l~~~~-~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~--~l~~l~~L~~L~ 653 (658)
.|+++.+ ++.+.. -..+.+++.|..|.+..++.+.. +.+..+. .++.|++++.|+
T Consensus 228 ~LnL~~~-~idswasvD~Ln~f~~l~dlRv~~~Pl~d~-l~~~err~llIaRL~~v~vLN 285 (418)
T KOG2982|consen 228 CLNLGAN-NIDSWASVDALNGFPQLVDLRVSENPLSDP-LRGGERRFLLIARLTKVQVLN 285 (418)
T ss_pred hhhhccc-ccccHHHHHHHcCCchhheeeccCCccccc-ccCCcceEEEEeeccceEEec
Confidence 6666666 444332 12356677777777776543222 3333222 355666666654
No 137
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.91 E-value=0.0046 Score=59.13 Aligned_cols=87 Identities=16% Similarity=0.148 Sum_probs=53.8
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCCCCHHHHHHHHHHhc----CCCC--CCCCCHH---HHHH
Q 047163 176 LNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQNPDHHKIQDKLAFGL----GMEF--GFNENMF---QRAS 246 (658)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l----~~~~--~~~~~~~---~~~~ 246 (658)
-.++.|+|.+|+|||+++.++....... -..++|++... ++..++.+.. ... .... ....+.. ....
T Consensus 12 g~i~~i~G~~GsGKT~l~~~~~~~~~~~--g~~v~yi~~e~-~~~~rl~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~ 87 (209)
T TIGR02237 12 GTITQIYGPPGSGKTNICMILAVNAARQ--GKKVVYIDTEG-LSPERFKQIA-EDRPERALSNFIVFEVFDFDEQGVAIQ 87 (209)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhC--CCeEEEEECCC-CCHHHHHHHH-HhChHHHhcCEEEEECCCHHHHHHHHH
Confidence 3589999999999999999998776532 46789999875 5555544432 221 0000 0011112 2244
Q ss_pred HHHHHHhcCCeEEEEEecCC
Q 047163 247 RLCERLKKEKRLLIILDNIW 266 (658)
Q Consensus 247 ~l~~~l~~~k~~LlVlDdv~ 266 (658)
.+...+...+.-+||+|.+.
T Consensus 88 ~l~~~~~~~~~~lvVIDSis 107 (209)
T TIGR02237 88 KTSKFIDRDSASLVVVDSFT 107 (209)
T ss_pred HHHHHHhhcCccEEEEeCcH
Confidence 45555554456699999885
No 138
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=96.91 E-value=0.0032 Score=69.35 Aligned_cols=52 Identities=27% Similarity=0.321 Sum_probs=43.2
Q ss_pred ccccccccchHHHHHHHHHHhccCCccE-EEEEcCCCChHHHHHHHHHHHhhh
Q 047163 151 VKDFEAFDSKMEVFQDVMEALKDDKLNI-IGVYGMGGVGKTTLVKQVAKQVME 202 (658)
Q Consensus 151 ~~~~~~~~gr~~~~~~l~~~l~~~~~~v-i~I~G~gGiGKTtLa~~v~~~~~~ 202 (658)
|....+++|.+..++.|...+..+.+.. +.++|..|+||||+|+.+++....
T Consensus 12 P~~f~divGQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c 64 (647)
T PRK07994 12 PQTFAEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNC 64 (647)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhh
Confidence 3567788999999999998887766644 579999999999999999987643
No 139
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.89 E-value=8.7e-05 Score=70.44 Aligned_cols=97 Identities=27% Similarity=0.251 Sum_probs=66.8
Q ss_pred CCCCceEEEecCCCCCCccchHHhcCCCCCcEEEccCCCCCCCccccccCCCcceEEccCCCCCCc---hhhhccCCCcE
Q 047163 498 CPNLQLFLFFGKGYGPMQISDLFFEGTKELKDLSLTRIPFSSLPSSLGSLINLGTLCLEDCPRNDI---AILRQLKKLEI 574 (658)
Q Consensus 498 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~l---~~~~~l~~L~~ 574 (658)
+.+.+.|++.|++... + ++..+|+.|++|.|+-|.++++- .+..|++|+.|+|+.|.|..+ .-+.++++|+.
T Consensus 18 l~~vkKLNcwg~~L~D--I--sic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~ 92 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDD--I--SICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRT 92 (388)
T ss_pred HHHhhhhcccCCCccH--H--HHHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhh
Confidence 4456667777776322 2 23567888888888888888773 466788888999988887776 56777888888
Q ss_pred EEccCcc--CCccc----hhhcCCCCCcEEc
Q 047163 575 LRLRHSY--TERLP----LEIGQLTRLRLLD 599 (658)
Q Consensus 575 L~l~~~~--~~~lp----~~~~~l~~L~~L~ 599 (658)
|.|..|. ...-+ .-+.-|++|+.|+
T Consensus 93 LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 93 LWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred HhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 8887762 22222 2345667777765
No 140
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.88 E-value=0.0053 Score=64.95 Aligned_cols=94 Identities=15% Similarity=0.231 Sum_probs=65.0
Q ss_pred cccccchHHHHHHHHHHhc---c---------CCccEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCCCCHH
Q 047163 154 FEAFDSKMEVFQDVMEALK---D---------DKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQNPDHH 221 (658)
Q Consensus 154 ~~~~~gr~~~~~~l~~~l~---~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~ 221 (658)
...+=|.++.+.++.+.+. . ...+=|.++|++|+|||.||+.+++...+- ++.++-+
T Consensus 189 f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vP-------f~~isAp---- 257 (802)
T KOG0733|consen 189 FSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVP-------FLSISAP---- 257 (802)
T ss_pred hhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCc-------eEeecch----
Confidence 4556688888888877654 1 224567899999999999999999988753 2333322
Q ss_pred HHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhcCCeEEEEEecCCcc
Q 047163 222 KIQDKLAFGLGMEFGFNENMFQRASRLCERLKKEKRLLIILDNIWIE 268 (658)
Q Consensus 222 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~ 268 (658)
+|+.++. .+.++.+.++++.-.+.-.|++++|+++-.
T Consensus 258 ----eivSGvS------GESEkkiRelF~~A~~~aPcivFiDeIDAI 294 (802)
T KOG0733|consen 258 ----EIVSGVS------GESEKKIRELFDQAKSNAPCIVFIDEIDAI 294 (802)
T ss_pred ----hhhcccC------cccHHHHHHHHHHHhccCCeEEEeeccccc
Confidence 3333332 233456677777776678999999998743
No 141
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.88 E-value=0.0011 Score=74.96 Aligned_cols=101 Identities=18% Similarity=0.276 Sum_probs=63.5
Q ss_pred cccccchHHHHHHHHHHhccCCccEEEEEcCCCChHHHHHHHHHHHhhhcc-C---CCEEEEEEEcCCCCHHHHHHHHHH
Q 047163 154 FEAFDSKMEVFQDVMEALKDDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDK-L---FDKVVMAEVTQNPDHHKIQDKLAF 229 (658)
Q Consensus 154 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~---F~~~~wv~v~~~~~~~~~~~~i~~ 229 (658)
...++||+++++.+++.|......-+.++|.+|+|||++|+.++....... . .++.+|.. +.. .++.
T Consensus 185 ~~~liGR~~ei~~~i~iL~r~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l-----~~~----~lla 255 (758)
T PRK11034 185 IDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL-----DIG----SLLA 255 (758)
T ss_pred CCcCcCCCHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec-----cHH----HHhc
Confidence 356899999999999988754445567899999999999999998754321 1 13444421 111 1111
Q ss_pred hcCCCCCCCCCHHHHHHHHHHHHhcCCeEEEEEecCCc
Q 047163 230 GLGMEFGFNENMFQRASRLCERLKKEKRLLIILDNIWI 267 (658)
Q Consensus 230 ~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~ 267 (658)
+.. . ....+.....+.+.+...+..+|++|++..
T Consensus 256 --G~~-~-~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~ 289 (758)
T PRK11034 256 --GTK-Y-RGDFEKRFKALLKQLEQDTNSILFIDEIHT 289 (758)
T ss_pred --ccc-h-hhhHHHHHHHHHHHHHhcCCCEEEeccHHH
Confidence 000 0 112233445555555544678999999863
No 142
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=96.86 E-value=0.011 Score=61.74 Aligned_cols=47 Identities=13% Similarity=0.231 Sum_probs=38.6
Q ss_pred cccccchHHHHHHHHHHhccCC----------ccEEEEEcCCCChHHHHHHHHHHHh
Q 047163 154 FEAFDSKMEVFQDVMEALKDDK----------LNIIGVYGMGGVGKTTLVKQVAKQV 200 (658)
Q Consensus 154 ~~~~~gr~~~~~~l~~~l~~~~----------~~vi~I~G~gGiGKTtLa~~v~~~~ 200 (658)
...++|.+..++.|...+..+. ..-+.++|+.|+|||++|+.++...
T Consensus 4 f~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l 60 (394)
T PRK07940 4 WDDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAAL 60 (394)
T ss_pred hhhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHh
Confidence 3467899999999988887543 3457899999999999999998765
No 143
>PRK08181 transposase; Validated
Probab=96.85 E-value=0.093 Score=51.82 Aligned_cols=77 Identities=21% Similarity=0.245 Sum_probs=47.5
Q ss_pred HHhccCCccEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCCCCCHHHHHHHH
Q 047163 169 EALKDDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQNPDHHKIQDKLAFGLGMEFGFNENMFQRASRL 248 (658)
Q Consensus 169 ~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l 248 (658)
+|+.. ..-+.|+|++|+|||.||..+.+..... ...+++++ ..++...+..... ... ....
T Consensus 101 ~~~~~--~~nlll~Gp~GtGKTHLa~Aia~~a~~~--g~~v~f~~------~~~L~~~l~~a~~-----~~~----~~~~ 161 (269)
T PRK08181 101 SWLAK--GANLLLFGPPGGGKSHLAAAIGLALIEN--GWRVLFTR------TTDLVQKLQVARR-----ELQ----LESA 161 (269)
T ss_pred HHHhc--CceEEEEecCCCcHHHHHHHHHHHHHHc--CCceeeee------HHHHHHHHHHHHh-----CCc----HHHH
Confidence 45543 3468999999999999999999887543 23345554 3455555543311 111 1223
Q ss_pred HHHHhcCCeEEEEEecCC
Q 047163 249 CERLKKEKRLLIILDNIW 266 (658)
Q Consensus 249 ~~~l~~~k~~LlVlDdv~ 266 (658)
.+.+. +-=|||+||+.
T Consensus 162 l~~l~--~~dLLIIDDlg 177 (269)
T PRK08181 162 IAKLD--KFDLLILDDLA 177 (269)
T ss_pred HHHHh--cCCEEEEeccc
Confidence 44443 34599999985
No 144
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.85 E-value=0.0051 Score=67.64 Aligned_cols=51 Identities=29% Similarity=0.411 Sum_probs=42.3
Q ss_pred ccccccccchHHHHHHHHHHhccCCcc-EEEEEcCCCChHHHHHHHHHHHhh
Q 047163 151 VKDFEAFDSKMEVFQDVMEALKDDKLN-IIGVYGMGGVGKTTLVKQVAKQVM 201 (658)
Q Consensus 151 ~~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~ 201 (658)
|....+++|.+..++.|.+++..++.. .+.++|..|+||||+|+.+.+...
T Consensus 12 P~~f~dviGQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~Ln 63 (618)
T PRK14951 12 PRSFSEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLN 63 (618)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 355677899999999999988876664 568999999999999999987753
No 145
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.82 E-value=0.0019 Score=65.53 Aligned_cols=47 Identities=23% Similarity=0.354 Sum_probs=40.9
Q ss_pred cccchHHHHHHHHHHhcc------CCccEEEEEcCCCChHHHHHHHHHHHhhh
Q 047163 156 AFDSKMEVFQDVMEALKD------DKLNIIGVYGMGGVGKTTLVKQVAKQVME 202 (658)
Q Consensus 156 ~~~gr~~~~~~l~~~l~~------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 202 (658)
.++|.++.++++++++.. ..-++++++|++|+||||||+.+.+....
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 688999999999999862 24578999999999999999999998865
No 146
>PRK07261 topology modulation protein; Provisional
Probab=96.80 E-value=0.0026 Score=58.55 Aligned_cols=34 Identities=24% Similarity=0.414 Sum_probs=25.8
Q ss_pred EEEEEcCCCChHHHHHHHHHHHhhhc-cCCCEEEE
Q 047163 178 IIGVYGMGGVGKTTLVKQVAKQVMED-KLFDKVVM 211 (658)
Q Consensus 178 vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~w 211 (658)
.|.|+|++|+||||||+.+....... -+.|...|
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~ 36 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHF 36 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEe
Confidence 58999999999999999998775431 23455555
No 147
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.79 E-value=0.0073 Score=63.79 Aligned_cols=51 Identities=25% Similarity=0.371 Sum_probs=43.1
Q ss_pred ccccccccchHHHHHHHHHHhccCCccE-EEEEcCCCChHHHHHHHHHHHhh
Q 047163 151 VKDFEAFDSKMEVFQDVMEALKDDKLNI-IGVYGMGGVGKTTLVKQVAKQVM 201 (658)
Q Consensus 151 ~~~~~~~~gr~~~~~~l~~~l~~~~~~v-i~I~G~gGiGKTtLa~~v~~~~~ 201 (658)
|.....++|.+..++.|..++..+.++. +.++|+.|+||||+|+.+++...
T Consensus 12 P~~~~eiiGq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~ 63 (397)
T PRK14955 12 PKKFADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVN 63 (397)
T ss_pred CCcHhhccChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhc
Confidence 3456678999999999988887777654 78999999999999999998774
No 148
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.79 E-value=0.0015 Score=61.98 Aligned_cols=133 Identities=16% Similarity=0.226 Sum_probs=71.7
Q ss_pred cCCCCCceEEEecCCCCCCccc--hHHhcCCCCCcEEEccCCCCCCCc--------------cccccCCCcceEEccCCC
Q 047163 496 LQCPNLQLFLFFGKGYGPMQIS--DLFFEGTKELKDLSLTRIPFSSLP--------------SSLGSLINLGTLCLEDCP 559 (658)
Q Consensus 496 ~~~~~L~~L~l~~~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~lp--------------~~i~~l~~L~~L~L~~~~ 559 (658)
..||+|++.++++|.+.....+ ..++++-..|.+|.+++|.+-.+. +...+-+.|++.....|+
T Consensus 89 lkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNR 168 (388)
T COG5238 89 LKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNR 168 (388)
T ss_pred hcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccch
Confidence 3667777777777764433322 234556667777777777654221 112234566666666665
Q ss_pred CCCc------hhhhccCCCcEEEccCccCCcc------chhhcCCCCCcEEcccCccccccc----ChhhhcCCCCCcEE
Q 047163 560 RNDI------AILRQLKKLEILRLRHSYTERL------PLEIGQLTRLRLLDLSNCWRLKVI----APNVISKLSRLEEL 623 (658)
Q Consensus 560 ~~~l------~~~~~l~~L~~L~l~~~~~~~l------p~~~~~l~~L~~L~l~~~~~l~~~----~~~~i~~l~~L~~L 623 (658)
+..- ..+....+|+++.+..|.|..= -.++..+.+|+.|++.+| -++.. ....++.++.|+.|
T Consensus 169 lengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDN-tft~~gS~~La~al~~W~~lrEL 247 (388)
T COG5238 169 LENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDN-TFTLEGSRYLADALCEWNLLREL 247 (388)
T ss_pred hccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeecccc-chhhhhHHHHHHHhcccchhhhc
Confidence 4432 2334445666666666655421 123445666777777666 33322 12234556666666
Q ss_pred EcccCC
Q 047163 624 YMGNSF 629 (658)
Q Consensus 624 ~l~~~~ 629 (658)
.+..|.
T Consensus 248 ~lnDCl 253 (388)
T COG5238 248 RLNDCL 253 (388)
T ss_pred cccchh
Confidence 666665
No 149
>PRK06696 uridine kinase; Validated
Probab=96.78 E-value=0.0022 Score=61.91 Aligned_cols=44 Identities=18% Similarity=0.367 Sum_probs=36.7
Q ss_pred chHHHHHHHHHHhc---cCCccEEEEEcCCCChHHHHHHHHHHHhhh
Q 047163 159 SKMEVFQDVMEALK---DDKLNIIGVYGMGGVGKTTLVKQVAKQVME 202 (658)
Q Consensus 159 gr~~~~~~l~~~l~---~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 202 (658)
.|++.+++|.+.+. .+...+|+|.|.+|+||||+|+.+......
T Consensus 2 ~~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~ 48 (223)
T PRK06696 2 SRKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEIKK 48 (223)
T ss_pred cHHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 47777888887774 456789999999999999999999988753
No 150
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=96.78 E-value=0.0062 Score=63.82 Aligned_cols=95 Identities=22% Similarity=0.249 Sum_probs=58.3
Q ss_pred cccccccchHHHHHHHHHHhc----c---------CCccEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCCC
Q 047163 152 KDFEAFDSKMEVFQDVMEALK----D---------DKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQNP 218 (658)
Q Consensus 152 ~~~~~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~ 218 (658)
....++.|-+..+++|.+.+. . ...+-+.++|++|+|||++|+.+++..... | +.+..
T Consensus 142 v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~--f-----i~i~~-- 212 (398)
T PTZ00454 142 VTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTAT--F-----IRVVG-- 212 (398)
T ss_pred CCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCC--E-----EEEeh--
Confidence 345567888888877766543 1 235678999999999999999999876431 2 22211
Q ss_pred CHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhcCCeEEEEEecCCc
Q 047163 219 DHHKIQDKLAFGLGMEFGFNENMFQRASRLCERLKKEKRLLIILDNIWI 267 (658)
Q Consensus 219 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~ 267 (658)
..+... ..+ ........++...+.....+|+||+++.
T Consensus 213 --s~l~~k---~~g-------e~~~~lr~lf~~A~~~~P~ILfIDEID~ 249 (398)
T PTZ00454 213 --SEFVQK---YLG-------EGPRMVRDVFRLARENAPSIIFIDEVDS 249 (398)
T ss_pred --HHHHHH---hcc-------hhHHHHHHHHHHHHhcCCeEEEEECHhh
Confidence 111111 111 1122344555555556789999999974
No 151
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.78 E-value=0.0045 Score=60.40 Aligned_cols=89 Identities=24% Similarity=0.238 Sum_probs=55.3
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHhhhccC----CCEEEEEEEcCCCCHHHHHHHHHHhcCCCCC---------CCCCH--
Q 047163 177 NIIGVYGMGGVGKTTLVKQVAKQVMEDKL----FDKVVMAEVTQNPDHHKIQDKLAFGLGMEFG---------FNENM-- 241 (658)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~---------~~~~~-- 241 (658)
.++.|+|.+|+|||++|.+++........ -..++|++....++..++.+ ++...+.... ...+.
T Consensus 20 ~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~-~~~~~~~~~~~~~~~i~~~~~~~~~~ 98 (235)
T cd01123 20 SITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQ-IAERFGLDPEEVLDNIYVARAYNSDH 98 (235)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHH-HHHHhccChHhHhcCEEEEecCCHHH
Confidence 58999999999999999999865432221 25789999887766554433 3333222110 01111
Q ss_pred -HHHHHHHHHHHhcC-CeEEEEEecCC
Q 047163 242 -FQRASRLCERLKKE-KRLLIILDNIW 266 (658)
Q Consensus 242 -~~~~~~l~~~l~~~-k~~LlVlDdv~ 266 (658)
.+....+.+.+... +--|||+|.+.
T Consensus 99 l~~~l~~l~~~l~~~~~~~liVIDSis 125 (235)
T cd01123 99 QLQLLEELEAILIESSRIKLVIVDSVT 125 (235)
T ss_pred HHHHHHHHHHHHhhcCCeeEEEEeCcH
Confidence 22334455555555 77899999985
No 152
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.77 E-value=0.0089 Score=62.65 Aligned_cols=51 Identities=22% Similarity=0.415 Sum_probs=42.9
Q ss_pred ccccccccchHHHHHHHHHHhccCCcc-EEEEEcCCCChHHHHHHHHHHHhh
Q 047163 151 VKDFEAFDSKMEVFQDVMEALKDDKLN-IIGVYGMGGVGKTTLVKQVAKQVM 201 (658)
Q Consensus 151 ~~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~ 201 (658)
|....+++|.+..++.+...+..+... .+.++|+.|+||||+|+.+.+...
T Consensus 13 P~~~~~iig~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~ 64 (367)
T PRK14970 13 PQTFDDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKIN 64 (367)
T ss_pred CCcHHhcCCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 345667899999999999998766654 788999999999999999988764
No 153
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=96.77 E-value=0.0055 Score=60.78 Aligned_cols=47 Identities=19% Similarity=0.145 Sum_probs=33.2
Q ss_pred ccccchHHHHHHHH---HHhc------------cCCccEEEEEcCCCChHHHHHHHHHHHhh
Q 047163 155 EAFDSKMEVFQDVM---EALK------------DDKLNIIGVYGMGGVGKTTLVKQVAKQVM 201 (658)
Q Consensus 155 ~~~~gr~~~~~~l~---~~l~------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (658)
..++|.+..++.+. .+.. .+....+.++|++|+||||+|+.+++...
T Consensus 6 ~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~ 67 (261)
T TIGR02881 6 SRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFK 67 (261)
T ss_pred HHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHH
Confidence 34677776665554 3331 12345678999999999999999998754
No 154
>PRK08084 DNA replication initiation factor; Provisional
Probab=96.75 E-value=0.0075 Score=58.67 Aligned_cols=51 Identities=14% Similarity=0.277 Sum_probs=35.8
Q ss_pred HHHHHHHHhccCCccEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEc
Q 047163 163 VFQDVMEALKDDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVT 215 (658)
Q Consensus 163 ~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~ 215 (658)
.+..+..+......+.+.|+|+.|+|||+|++.+++..... -..+.++++.
T Consensus 32 a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~--~~~v~y~~~~ 82 (235)
T PRK08084 32 LLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELSQR--GRAVGYVPLD 82 (235)
T ss_pred HHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHhC--CCeEEEEEHH
Confidence 44444444444455689999999999999999999887642 2345666653
No 155
>PRK08727 hypothetical protein; Validated
Probab=96.74 E-value=0.0074 Score=58.62 Aligned_cols=59 Identities=12% Similarity=0.172 Sum_probs=36.8
Q ss_pred cccccchH-HHHHHHHHHhccCCccEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEE
Q 047163 154 FEAFDSKM-EVFQDVMEALKDDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEV 214 (658)
Q Consensus 154 ~~~~~gr~-~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v 214 (658)
.+.|++.. ..+..+...........+.|+|..|+|||+|++.+++..... ...+.++++
T Consensus 18 f~~f~~~~~n~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a~~~~~~~~--~~~~~y~~~ 77 (233)
T PRK08727 18 FDSYIAAPDGLLAQLQALAAGQSSDWLYLSGPAGTGKTHLALALCAAAEQA--GRSSAYLPL 77 (233)
T ss_pred hhhccCCcHHHHHHHHHHHhccCCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEEeH
Confidence 34454433 333333333223334579999999999999999999886543 234556654
No 156
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.73 E-value=0.01 Score=57.49 Aligned_cols=90 Identities=23% Similarity=0.216 Sum_probs=53.7
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHHhhhcc----CCCEEEEEEEcCCCCHHHHHHHHHHhcCCCC---------CCCCCHH
Q 047163 176 LNIIGVYGMGGVGKTTLVKQVAKQVMEDK----LFDKVVMAEVTQNPDHHKIQDKLAFGLGMEF---------GFNENMF 242 (658)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~---------~~~~~~~ 242 (658)
-.++.|+|.+|+|||+||.+++....... .=..++|++....++...+.+ +....+... ....+..
T Consensus 19 g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl~~-~~~~~~~~~~~~~~~i~~~~~~~~~ 97 (226)
T cd01393 19 GRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLVQ-LAVRFGLDPEEVLDNIYVARPYNGE 97 (226)
T ss_pred CcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHHHH-HHHHhccchhhhhccEEEEeCCCHH
Confidence 35899999999999999999987654221 014678999877766655433 222221110 0112333
Q ss_pred HHHHHHHHHHh---cCCeEEEEEecCC
Q 047163 243 QRASRLCERLK---KEKRLLIILDNIW 266 (658)
Q Consensus 243 ~~~~~l~~~l~---~~k~~LlVlDdv~ 266 (658)
+....+.+... ..+--|+|+|.+.
T Consensus 98 ~~~~~l~~~~~~~~~~~~~lvVIDsis 124 (226)
T cd01393 98 QQLEIVEELERIMSSGRVDLVVVDSVA 124 (226)
T ss_pred HHHHHHHHHHHHhhcCCeeEEEEcCcc
Confidence 33333333332 3456699999986
No 157
>PRK08116 hypothetical protein; Validated
Probab=96.71 E-value=0.0087 Score=59.31 Aligned_cols=74 Identities=20% Similarity=0.256 Sum_probs=46.7
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhcCC
Q 047163 177 NIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQNPDHHKIQDKLAFGLGMEFGFNENMFQRASRLCERLKKEK 256 (658)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k 256 (658)
.-+.++|..|+|||.||..+++....+ -..+++++ ..+++..+......... . ....+.+.+..
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~--~~~v~~~~------~~~ll~~i~~~~~~~~~--~----~~~~~~~~l~~-- 178 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEK--GVPVIFVN------FPQLLNRIKSTYKSSGK--E----DENEIIRSLVN-- 178 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEE------HHHHHHHHHHHHhcccc--c----cHHHHHHHhcC--
Confidence 358899999999999999999998653 33456665 33455555444322211 1 12234455542
Q ss_pred eEEEEEecCC
Q 047163 257 RLLIILDNIW 266 (658)
Q Consensus 257 ~~LlVlDdv~ 266 (658)
-=||||||+.
T Consensus 179 ~dlLviDDlg 188 (268)
T PRK08116 179 ADLLILDDLG 188 (268)
T ss_pred CCEEEEeccc
Confidence 2389999995
No 158
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.70 E-value=0.0064 Score=61.25 Aligned_cols=84 Identities=19% Similarity=0.203 Sum_probs=56.0
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCCCCHHHHHHHHHHhcCCCCC-----CCCCHHHHHHHHHHH
Q 047163 177 NIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQNPDHHKIQDKLAFGLGMEFG-----FNENMFQRASRLCER 251 (658)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~~~ 251 (658)
+++-|+|++|+||||||.++....... -..++|++..+.++.. .+..++.+.. .+...++....+...
T Consensus 56 ~iteI~G~~GsGKTtLaL~~~~~~~~~--g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~~~l 128 (321)
T TIGR02012 56 RIIEIYGPESSGKTTLALHAIAEAQKA--GGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIAETL 128 (321)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHHHH
Confidence 589999999999999999988776532 3467899887766553 2344443211 123444455555555
Q ss_pred HhcCCeEEEEEecCCc
Q 047163 252 LKKEKRLLIILDNIWI 267 (658)
Q Consensus 252 l~~~k~~LlVlDdv~~ 267 (658)
++.+.--+||+|.|..
T Consensus 129 i~~~~~~lIVIDSv~a 144 (321)
T TIGR02012 129 VRSGAVDIIVVDSVAA 144 (321)
T ss_pred hhccCCcEEEEcchhh
Confidence 5556677999999853
No 159
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=96.67 E-value=0.013 Score=61.07 Aligned_cols=51 Identities=24% Similarity=0.357 Sum_probs=42.6
Q ss_pred ccccccccchHHHHHHHHHHhccCCcc-EEEEEcCCCChHHHHHHHHHHHhh
Q 047163 151 VKDFEAFDSKMEVFQDVMEALKDDKLN-IIGVYGMGGVGKTTLVKQVAKQVM 201 (658)
Q Consensus 151 ~~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~ 201 (658)
|.....++|.+..++.+.+++..+... .+.++|+.|+||||+|+.+.....
T Consensus 10 p~~~~~iig~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~ 61 (355)
T TIGR02397 10 PQTFEDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALN 61 (355)
T ss_pred CCcHhhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 345667899999999999988766654 578999999999999999998753
No 160
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=96.66 E-value=0.0068 Score=65.67 Aligned_cols=63 Identities=29% Similarity=0.269 Sum_probs=46.8
Q ss_pred cccccchHHHHHHHHHHhc------cCCccEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCCCCHH
Q 047163 154 FEAFDSKMEVFQDVMEALK------DDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQNPDHH 221 (658)
Q Consensus 154 ~~~~~gr~~~~~~l~~~l~------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~ 221 (658)
..+..|-++.+++|+++|. .-.-+++++||++|+|||.|++.++....-+ | +-++++.-.|..
T Consensus 322 d~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~Rk--f---vR~sLGGvrDEA 390 (782)
T COG0466 322 DKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRK--F---VRISLGGVRDEA 390 (782)
T ss_pred cccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhCCC--E---EEEecCccccHH
Confidence 3445799999999999985 2234699999999999999999999887533 4 334555444444
No 161
>PRK12377 putative replication protein; Provisional
Probab=96.65 E-value=0.015 Score=56.57 Aligned_cols=74 Identities=19% Similarity=0.277 Sum_probs=47.4
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhc
Q 047163 175 KLNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQNPDHHKIQDKLAFGLGMEFGFNENMFQRASRLCERLKK 254 (658)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 254 (658)
+...+.|+|..|+|||+||..+++..... ...++++++. ++...|-..... .. ....+.+.+.
T Consensus 100 ~~~~l~l~G~~GtGKThLa~AIa~~l~~~--g~~v~~i~~~------~l~~~l~~~~~~----~~----~~~~~l~~l~- 162 (248)
T PRK12377 100 GCTNFVFSGKPGTGKNHLAAAIGNRLLAK--GRSVIVVTVP------DVMSRLHESYDN----GQ----SGEKFLQELC- 162 (248)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCCeEEEEHH------HHHHHHHHHHhc----cc----hHHHHHHHhc-
Confidence 34678999999999999999999998643 3335666543 344444333211 11 1123444453
Q ss_pred CCeEEEEEecCC
Q 047163 255 EKRLLIILDNIW 266 (658)
Q Consensus 255 ~k~~LlVlDdv~ 266 (658)
+--||||||+.
T Consensus 163 -~~dLLiIDDlg 173 (248)
T PRK12377 163 -KVDLLVLDEIG 173 (248)
T ss_pred -CCCEEEEcCCC
Confidence 56799999995
No 162
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.65 E-value=0.00018 Score=68.36 Aligned_cols=100 Identities=22% Similarity=0.183 Sum_probs=71.7
Q ss_pred CCCCcEEEccCCCCCCCccccccCCCcceEEccCCCCCCchhhhccCCCcEEEccCccCCccch--hhcCCCCCcEEccc
Q 047163 524 TKELKDLSLTRIPFSSLPSSLGSLINLGTLCLEDCPRNDIAILRQLKKLEILRLRHSYTERLPL--EIGQLTRLRLLDLS 601 (658)
Q Consensus 524 ~~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~l~~~~~l~~L~~L~l~~~~~~~lp~--~~~~l~~L~~L~l~ 601 (658)
+.+.+.|++.||.+..+. -...++.|++|.|+-|+|+.+..+..+.+|+.|.|+.|.|.++.+ -+.++++|+.|.|.
T Consensus 18 l~~vkKLNcwg~~L~DIs-ic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ 96 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDIS-ICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLD 96 (388)
T ss_pred HHHhhhhcccCCCccHHH-HHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhc
Confidence 456777788888887652 123577888888888888888888888888888888888877753 45678888888888
Q ss_pred CcccccccCh----hhhcCCCCCcEEE
Q 047163 602 NCWRLKVIAP----NVISKLSRLEELY 624 (658)
Q Consensus 602 ~~~~l~~~~~----~~i~~l~~L~~L~ 624 (658)
.|+-...-++ ..+.-||+|+.|+
T Consensus 97 ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 97 ENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred cCCcccccchhHHHHHHHHcccchhcc
Confidence 7743333332 2356677777776
No 163
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=96.61 E-value=0.0081 Score=65.51 Aligned_cols=95 Identities=25% Similarity=0.285 Sum_probs=54.4
Q ss_pred cccccccchHHHHHHHHHH---hcc---------CCccEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCCCC
Q 047163 152 KDFEAFDSKMEVFQDVMEA---LKD---------DKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQNPD 219 (658)
Q Consensus 152 ~~~~~~~gr~~~~~~l~~~---l~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~ 219 (658)
....++.|-+..++++.+. +.. ...+-+.++|++|+|||++|+.++...... ++.++.
T Consensus 52 ~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~-------~~~i~~--- 121 (495)
T TIGR01241 52 VTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVP-------FFSISG--- 121 (495)
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCC-------eeeccH---
Confidence 4455677877766555443 321 123458899999999999999998775421 222221
Q ss_pred HHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhcCCeEEEEEecCCc
Q 047163 220 HHKIQDKLAFGLGMEFGFNENMFQRASRLCERLKKEKRLLIILDNIWI 267 (658)
Q Consensus 220 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~ 267 (658)
..+.... .+ ........+++..+....++|+|||++.
T Consensus 122 -~~~~~~~---~g-------~~~~~l~~~f~~a~~~~p~Il~iDEid~ 158 (495)
T TIGR01241 122 -SDFVEMF---VG-------VGASRVRDLFEQAKKNAPCIIFIDEIDA 158 (495)
T ss_pred -HHHHHHH---hc-------ccHHHHHHHHHHHHhcCCCEEEEechhh
Confidence 1111111 00 0122334444444445678999999975
No 164
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.61 E-value=0.0077 Score=60.72 Aligned_cols=84 Identities=21% Similarity=0.196 Sum_probs=55.8
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCCCCHHHHHHHHHHhcCCCCC-----CCCCHHHHHHHHHH
Q 047163 176 LNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQNPDHHKIQDKLAFGLGMEFG-----FNENMFQRASRLCE 250 (658)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~~ 250 (658)
-+++-|+|++|+||||||.+++...... -..++|++..+.++.. .+..++.+.. .+.+.++....+..
T Consensus 55 G~iteI~Gp~GsGKTtLal~~~~~~~~~--g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i~~~ 127 (325)
T cd00983 55 GRIIEIYGPESSGKTTLALHAIAEAQKL--GGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEIADS 127 (325)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc--CCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHHHHH
Confidence 3588899999999999999988776532 3567899987776653 2333333211 12334445555555
Q ss_pred HHhcCCeEEEEEecCC
Q 047163 251 RLKKEKRLLIILDNIW 266 (658)
Q Consensus 251 ~l~~~k~~LlVlDdv~ 266 (658)
.++.+.--+||+|-|.
T Consensus 128 li~s~~~~lIVIDSva 143 (325)
T cd00983 128 LVRSGAVDLIVVDSVA 143 (325)
T ss_pred HHhccCCCEEEEcchH
Confidence 5555667799999885
No 165
>PRK09354 recA recombinase A; Provisional
Probab=96.60 E-value=0.0089 Score=60.78 Aligned_cols=84 Identities=19% Similarity=0.189 Sum_probs=57.5
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCCCCHHHHHHHHHHhcCCCCC-----CCCCHHHHHHHHHH
Q 047163 176 LNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQNPDHHKIQDKLAFGLGMEFG-----FNENMFQRASRLCE 250 (658)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~~ 250 (658)
-+++-|+|++|+||||||.++....... -..++|++....++.. .+..++.+.. .+...++....+..
T Consensus 60 G~IteI~G~~GsGKTtLal~~~~~~~~~--G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp~~~Eq~l~i~~~ 132 (349)
T PRK09354 60 GRIVEIYGPESSGKTTLALHAIAEAQKA--GGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQPDTGEQALEIADT 132 (349)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEECCccchHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHHH
Confidence 3588899999999999999988776532 3578899988777653 3444443211 12344555555555
Q ss_pred HHhcCCeEEEEEecCC
Q 047163 251 RLKKEKRLLIILDNIW 266 (658)
Q Consensus 251 ~l~~~k~~LlVlDdv~ 266 (658)
.++.++--+||+|-|.
T Consensus 133 li~s~~~~lIVIDSva 148 (349)
T PRK09354 133 LVRSGAVDLIVVDSVA 148 (349)
T ss_pred HhhcCCCCEEEEeChh
Confidence 5565667799999985
No 166
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.57 E-value=0.022 Score=55.84 Aligned_cols=89 Identities=21% Similarity=0.321 Sum_probs=56.5
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCCCC-HHHHHHHHHHhcCCCC------CCCCCHH------H
Q 047163 177 NIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQNPD-HHKIQDKLAFGLGMEF------GFNENMF------Q 243 (658)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~-~~~~~~~i~~~l~~~~------~~~~~~~------~ 243 (658)
..++|.|..|+|||||++.+++....+ +-+.++++-+++... ..++.+.+...-.... ....... .
T Consensus 70 Qr~~If~~~G~GKTtLa~~i~~~i~~~-~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~~~~ 148 (274)
T cd01133 70 GKIGLFGGAGVGKTVLIMELINNIAKA-HGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARARVAL 148 (274)
T ss_pred CEEEEecCCCCChhHHHHHHHHHHHhc-CCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHHH
Confidence 478999999999999999999998753 234677888887754 4455555543211110 0011111 1
Q ss_pred HHHHHHHHHh-c-CCeEEEEEecCC
Q 047163 244 RASRLCERLK-K-EKRLLIILDNIW 266 (658)
Q Consensus 244 ~~~~l~~~l~-~-~k~~LlVlDdv~ 266 (658)
.+-.+-++++ . ++.+|+++||+.
T Consensus 149 ~a~~~AEyfr~~~g~~Vl~~~Dslt 173 (274)
T cd01133 149 TGLTMAEYFRDEEGQDVLLFIDNIF 173 (274)
T ss_pred HHHHHHHHHHHhcCCeEEEEEeChh
Confidence 1223445553 3 799999999986
No 167
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.56 E-value=0.013 Score=64.22 Aligned_cols=51 Identities=22% Similarity=0.270 Sum_probs=43.6
Q ss_pred ccccccccchHHHHHHHHHHhccCCccE-EEEEcCCCChHHHHHHHHHHHhh
Q 047163 151 VKDFEAFDSKMEVFQDVMEALKDDKLNI-IGVYGMGGVGKTTLVKQVAKQVM 201 (658)
Q Consensus 151 ~~~~~~~~gr~~~~~~l~~~l~~~~~~v-i~I~G~gGiGKTtLa~~v~~~~~ 201 (658)
|.....++|.+..++.|..++..+.+.. +.++|+.|+||||+|+.+.+...
T Consensus 9 P~~f~eivGq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~ 60 (584)
T PRK14952 9 PATFAEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLN 60 (584)
T ss_pred CCcHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3556778999999999999998777665 68999999999999999998764
No 168
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.56 E-value=0.0068 Score=63.09 Aligned_cols=87 Identities=25% Similarity=0.281 Sum_probs=58.4
Q ss_pred hHHHHHHHHHHhccC--------C-ccEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCCCCHHHHHHHHHHh
Q 047163 160 KMEVFQDVMEALKDD--------K-LNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQNPDHHKIQDKLAFG 230 (658)
Q Consensus 160 r~~~~~~l~~~l~~~--------~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~ 230 (658)
-..++++|+++|.+. . ++=|.++|++|.|||-||+.|+....+- | |...+..|+.. +-.
T Consensus 312 AK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VP--F----F~~sGSEFdEm------~VG 379 (752)
T KOG0734|consen 312 AKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVP--F----FYASGSEFDEM------FVG 379 (752)
T ss_pred HHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCC--e----Eeccccchhhh------hhc
Confidence 445778888988742 2 3568899999999999999999887653 2 33333343322 111
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHhcCCeEEEEEecCCc
Q 047163 231 LGMEFGFNENMFQRASRLCERLKKEKRLLIILDNIWI 267 (658)
Q Consensus 231 l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~ 267 (658)
. -..+...++..-++.-.|.|.+|.++.
T Consensus 380 v---------GArRVRdLF~aAk~~APcIIFIDEiDa 407 (752)
T KOG0734|consen 380 V---------GARRVRDLFAAAKARAPCIIFIDEIDA 407 (752)
T ss_pred c---------cHHHHHHHHHHHHhcCCeEEEEechhh
Confidence 1 123555666666666789999999874
No 169
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=96.56 E-value=0.011 Score=65.22 Aligned_cols=51 Identities=20% Similarity=0.380 Sum_probs=43.7
Q ss_pred ccccccccchHHHHHHHHHHhccCCcc-EEEEEcCCCChHHHHHHHHHHHhh
Q 047163 151 VKDFEAFDSKMEVFQDVMEALKDDKLN-IIGVYGMGGVGKTTLVKQVAKQVM 201 (658)
Q Consensus 151 ~~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~ 201 (658)
|.....++|.+..++.|...+..++.. -+.++|+.|+||||+|+.+.+...
T Consensus 20 P~~f~dliGq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~ 71 (598)
T PRK09111 20 PQTFDDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALN 71 (598)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhC
Confidence 456778899999999999998876654 588999999999999999998764
No 170
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.55 E-value=0.0078 Score=55.75 Aligned_cols=37 Identities=24% Similarity=0.452 Sum_probs=29.2
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEE
Q 047163 175 KLNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAE 213 (658)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~ 213 (658)
...+|.+.|+.|+||||+|+.++...... +...++++
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l~~~--~~~~~~~~ 42 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLKLK--YSNVIYLD 42 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHc--CCcEEEEe
Confidence 44589999999999999999999988643 55555543
No 171
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.55 E-value=0.011 Score=65.31 Aligned_cols=51 Identities=25% Similarity=0.379 Sum_probs=42.9
Q ss_pred ccccccccchHHHHHHHHHHhccCCccE-EEEEcCCCChHHHHHHHHHHHhh
Q 047163 151 VKDFEAFDSKMEVFQDVMEALKDDKLNI-IGVYGMGGVGKTTLVKQVAKQVM 201 (658)
Q Consensus 151 ~~~~~~~~gr~~~~~~l~~~l~~~~~~v-i~I~G~gGiGKTtLa~~v~~~~~ 201 (658)
|.....++|.+..++.|...+..+.+.. +.++|+.|+||||+|+.+.+...
T Consensus 12 P~~f~eivGQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~ 63 (620)
T PRK14954 12 PSKFADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVN 63 (620)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhC
Confidence 3456778999999999988887766654 88999999999999999998864
No 172
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=96.49 E-value=0.0065 Score=64.18 Aligned_cols=93 Identities=22% Similarity=0.285 Sum_probs=56.9
Q ss_pred ccccccchHHHHHHHHHHhc----c---------CCccEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCCCC
Q 047163 153 DFEAFDSKMEVFQDVMEALK----D---------DKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQNPD 219 (658)
Q Consensus 153 ~~~~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~ 219 (658)
...++.|.+..+++|.+.+. . ...+-+.++|++|+|||++|+.+++.... .| +.+...
T Consensus 181 ~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~--~f-----i~V~~s-- 251 (438)
T PTZ00361 181 SYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSA--TF-----LRVVGS-- 251 (438)
T ss_pred CHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCC--CE-----EEEecc--
Confidence 34556788888888777653 1 23456889999999999999999997643 23 222111
Q ss_pred HHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhcCCeEEEEEecCC
Q 047163 220 HHKIQDKLAFGLGMEFGFNENMFQRASRLCERLKKEKRLLIILDNIW 266 (658)
Q Consensus 220 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~ 266 (658)
.+... .. .........+++....+...+|+||+++
T Consensus 252 --eL~~k---~~-------Ge~~~~vr~lF~~A~~~~P~ILfIDEID 286 (438)
T PTZ00361 252 --ELIQK---YL-------GDGPKLVRELFRVAEENAPSIVFIDEID 286 (438)
T ss_pred --hhhhh---hc-------chHHHHHHHHHHHHHhCCCcEEeHHHHH
Confidence 11111 00 1112234444554444578899999986
No 173
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.48 E-value=0.019 Score=56.29 Aligned_cols=88 Identities=23% Similarity=0.337 Sum_probs=54.9
Q ss_pred hHHHHHHH---HHHhccCCccEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCCCCHHHHHHHHHHhcCCCCC
Q 047163 160 KMEVFQDV---MEALKDDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQNPDHHKIQDKLAFGLGMEFG 236 (658)
Q Consensus 160 r~~~~~~l---~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~ 236 (658)
+...+..+ .+++. +..-+.++|.+|+|||.||..+.+... +..+ .+.+++ ..++..++.......
T Consensus 88 ~~~~l~~~~~~~~~~~--~~~nl~l~G~~G~GKThLa~Ai~~~l~-~~g~-sv~f~~------~~el~~~Lk~~~~~~-- 155 (254)
T COG1484 88 DKKALEDLASLVEFFE--RGENLVLLGPPGVGKTHLAIAIGNELL-KAGI-SVLFIT------APDLLSKLKAAFDEG-- 155 (254)
T ss_pred hHHHHHHHHHHHHHhc--cCCcEEEECCCCCcHHHHHHHHHHHHH-HcCC-eEEEEE------HHHHHHHHHHHHhcC--
Confidence 44444444 44443 556789999999999999999999998 4323 344544 345555655544321
Q ss_pred CCCCHHHHHHHHHHHHhcCCeEEEEEecCCc
Q 047163 237 FNENMFQRASRLCERLKKEKRLLIILDNIWI 267 (658)
Q Consensus 237 ~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~ 267 (658)
.....+.+.+. +-=|+||||+..
T Consensus 156 ------~~~~~l~~~l~--~~dlLIiDDlG~ 178 (254)
T COG1484 156 ------RLEEKLLRELK--KVDLLIIDDIGY 178 (254)
T ss_pred ------chHHHHHHHhh--cCCEEEEecccC
Confidence 12234444454 445999999963
No 174
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.47 E-value=0.11 Score=55.08 Aligned_cols=87 Identities=20% Similarity=0.148 Sum_probs=47.3
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCCCC-HHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhcC
Q 047163 177 NIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQNPD-HHKIQDKLAFGLGMEFGFNENMFQRASRLCERLKKE 255 (658)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 255 (658)
+++.++|++|+||||++..++........-..+..++...... ...-++...+.++.+........+....+. .+.
T Consensus 222 ~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~-~~~-- 298 (424)
T PRK05703 222 GVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALE-QLR-- 298 (424)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHH-HhC--
Confidence 5899999999999999999887765111123556666533211 111223333444544332222233333332 232
Q ss_pred CeEEEEEecCC
Q 047163 256 KRLLIILDNIW 266 (658)
Q Consensus 256 k~~LlVlDdv~ 266 (658)
..=+||+|..-
T Consensus 299 ~~DlVlIDt~G 309 (424)
T PRK05703 299 DCDVILIDTAG 309 (424)
T ss_pred CCCEEEEeCCC
Confidence 35688899764
No 175
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.46 E-value=0.019 Score=63.74 Aligned_cols=50 Identities=28% Similarity=0.335 Sum_probs=42.3
Q ss_pred cccccccchHHHHHHHHHHhccCCccE-EEEEcCCCChHHHHHHHHHHHhh
Q 047163 152 KDFEAFDSKMEVFQDVMEALKDDKLNI-IGVYGMGGVGKTTLVKQVAKQVM 201 (658)
Q Consensus 152 ~~~~~~~gr~~~~~~l~~~l~~~~~~v-i~I~G~gGiGKTtLa~~v~~~~~ 201 (658)
.....++|.+..++.|..++..+.+.. +.++|+.|+||||+|+.+.....
T Consensus 14 ~~f~~viGq~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~ 64 (614)
T PRK14971 14 STFESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTIN 64 (614)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhC
Confidence 456678999999999999998776654 78999999999999999988753
No 176
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.46 E-value=0.013 Score=56.61 Aligned_cols=86 Identities=22% Similarity=0.209 Sum_probs=51.3
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCCCCHHHHHHHHHHh----cCCCC--CCCCCHHH---HHH
Q 047163 176 LNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQNPDHHKIQDKLAFG----LGMEF--GFNENMFQ---RAS 246 (658)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~----l~~~~--~~~~~~~~---~~~ 246 (658)
-.++.|+|.+|+|||++|.+++...... -..++|++.. .++...+.+ +... ...+. ....+..+ ...
T Consensus 23 g~i~~i~G~~GsGKT~l~~~la~~~~~~--~~~v~yi~~e-~~~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 98 (225)
T PRK09361 23 GTITQIYGPPGSGKTNICLQLAVEAAKN--GKKVIYIDTE-GLSPERFKQ-IAGEDFEELLSNIIIFEPSSFEEQSEAIR 98 (225)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEECC-CCCHHHHHH-HHhhChHhHhhCeEEEeCCCHHHHHHHHH
Confidence 3589999999999999999998876532 4678899887 555444332 2221 00000 00112222 223
Q ss_pred HHHHHHhcCCeEEEEEecCC
Q 047163 247 RLCERLKKEKRLLIILDNIW 266 (658)
Q Consensus 247 ~l~~~l~~~k~~LlVlDdv~ 266 (658)
.+...+. .+.-++|+|.+.
T Consensus 99 ~~~~~~~-~~~~lvVIDsi~ 117 (225)
T PRK09361 99 KAEKLAK-ENVGLIVLDSAT 117 (225)
T ss_pred HHHHHHH-hcccEEEEeCcH
Confidence 3444443 466799999985
No 177
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.43 E-value=0.022 Score=51.74 Aligned_cols=40 Identities=35% Similarity=0.462 Sum_probs=31.2
Q ss_pred EEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCCCC
Q 047163 178 IIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQNPD 219 (658)
Q Consensus 178 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~ 219 (658)
++.|+|.+|+||||+++.+...... .-..++|++......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~--~~~~v~~~~~e~~~~ 40 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIAT--KGGKVVYVDIEEEIE 40 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHh--cCCEEEEEECCcchH
Confidence 4689999999999999999988754 234677887765543
No 178
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=96.43 E-value=0.016 Score=51.12 Aligned_cols=113 Identities=16% Similarity=0.203 Sum_probs=80.1
Q ss_pred ccchhhhhhhhhccchhhHhhhhhcccccchHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhcCCcchHHHHHHHHHHHHH
Q 047163 2 AEVCLGAFSSLVGAKSLFKPIKRQISYVFKYQSYIEELKDQVKQLEHKRERVKIPVHHATQQGNEIYKDVADWLNSVKEF 81 (658)
Q Consensus 2 ae~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~i~~~l~~a~~~~~~~~~~~~~Wl~~l~~~ 81 (658)
||++++++++++. +.|...+.+...... ..+.-+++|.+.++.|...+.+.+..+...+..-+.=++++.+.
T Consensus 3 ~eL~~gaalG~~~-~eLlk~v~~~~~k~~-------~fk~~l~~L~sTl~~i~P~i~eI~~~~~eld~~~~ee~e~L~~~ 74 (147)
T PF05659_consen 3 AELVGGAALGAVF-GELLKAVIDASKKSL-------SFKSILKRLESTLESIIPIIKEIDKLNVELDRPRQEEIERLKEL 74 (147)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHH-------hhhhHHHHHHHHHHHhhhHHHHHHHHhhhcCCchhHHHHHHHHH
Confidence 5677777777774 556665555544433 44677788888888888888888776555555557888999999
Q ss_pred HHHHHHHHHhhHHHhhhhcccCCCCChhHHhHhHHHHHHHHHHHHHHHh
Q 047163 82 AQGAAKSIIDDEDRAKKFCFKGLCPNLISCYKLSKQAATAADTAASLVK 130 (658)
Q Consensus 82 ~~~~~ed~ld~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~i~~ 130 (658)
..++ +++++.+...+ ..+++..++.+++|+++.+.+.....
T Consensus 75 L~~g-~~LV~k~sk~~-------r~n~~kk~~y~~Ki~~le~~l~~f~~ 115 (147)
T PF05659_consen 75 LEKG-KELVEKCSKVR-------RWNLYKKPRYARKIEELEESLRRFIQ 115 (147)
T ss_pred HHHH-HHHHHHhcccc-------HHHHHhhHhHHHHHHHHHHHHHHHhc
Confidence 9999 99887754222 24566777888999888877776543
No 179
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=96.40 E-value=0.013 Score=56.24 Aligned_cols=76 Identities=25% Similarity=0.381 Sum_probs=49.1
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhc
Q 047163 175 KLNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQNPDHHKIQDKLAFGLGMEFGFNENMFQRASRLCERLKK 254 (658)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 254 (658)
....+.|+|..|+|||.|.+.+++.......=..+++++ ..+..+.+...+... ....+...++
T Consensus 33 ~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~------~~~f~~~~~~~~~~~---------~~~~~~~~~~- 96 (219)
T PF00308_consen 33 RYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLS------AEEFIREFADALRDG---------EIEEFKDRLR- 96 (219)
T ss_dssp SSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEE------HHHHHHHHHHHHHTT---------SHHHHHHHHC-
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeec------HHHHHHHHHHHHHcc---------cchhhhhhhh-
Confidence 345789999999999999999999876532222456665 344555555444221 2234555565
Q ss_pred CCeEEEEEecCCc
Q 047163 255 EKRLLIILDNIWI 267 (658)
Q Consensus 255 ~k~~LlVlDdv~~ 267 (658)
.-=++++||+..
T Consensus 97 -~~DlL~iDDi~~ 108 (219)
T PF00308_consen 97 -SADLLIIDDIQF 108 (219)
T ss_dssp -TSSEEEEETGGG
T ss_pred -cCCEEEEecchh
Confidence 345888999964
No 180
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.40 E-value=0.019 Score=59.14 Aligned_cols=88 Identities=18% Similarity=0.167 Sum_probs=51.5
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCC-CCHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhc
Q 047163 176 LNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQN-PDHHKIQDKLAFGLGMEFGFNENMFQRASRLCERLKK 254 (658)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 254 (658)
-.+++++|+.|+||||++..+......+.....+..++.... ....+-++...+.++.+........+.. .....+.
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~-~~l~~l~- 214 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQ-LALAELR- 214 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHH-HHHHHhc-
Confidence 359999999999999999999988653311234555554321 2334445555566666543222222222 2233343
Q ss_pred CCeEEEEEecCC
Q 047163 255 EKRLLIILDNIW 266 (658)
Q Consensus 255 ~k~~LlVlDdv~ 266 (658)
++-+|++|...
T Consensus 215 -~~DlVLIDTaG 225 (374)
T PRK14722 215 -NKHMVLIDTIG 225 (374)
T ss_pred -CCCEEEEcCCC
Confidence 34667799875
No 181
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.39 E-value=0.021 Score=57.19 Aligned_cols=88 Identities=22% Similarity=0.268 Sum_probs=48.1
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCCC-CHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHh
Q 047163 175 KLNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQNP-DHHKIQDKLAFGLGMEFGFNENMFQRASRLCERLK 253 (658)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 253 (658)
..++++|+|++|+||||++..++.....+..-..+..++..... ....-+......++.+.....+..+. ....+.+.
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~~~~l-~~~l~~~~ 271 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVKVARDPKEL-RKALDRLR 271 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCceeccCCHHHH-HHHHHHcc
Confidence 35699999999999999999998877543111245555543321 12222233344445444322222222 33333343
Q ss_pred cCCeEEEEEecC
Q 047163 254 KEKRLLIILDNI 265 (658)
Q Consensus 254 ~~k~~LlVlDdv 265 (658)
+.=+|++|..
T Consensus 272 --~~d~vliDt~ 281 (282)
T TIGR03499 272 --DKDLILIDTA 281 (282)
T ss_pred --CCCEEEEeCC
Confidence 2457888864
No 182
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.39 E-value=0.024 Score=61.18 Aligned_cols=51 Identities=25% Similarity=0.240 Sum_probs=42.0
Q ss_pred ccccccccchHHHHHHHHHHhccCCcc-EEEEEcCCCChHHHHHHHHHHHhh
Q 047163 151 VKDFEAFDSKMEVFQDVMEALKDDKLN-IIGVYGMGGVGKTTLVKQVAKQVM 201 (658)
Q Consensus 151 ~~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~ 201 (658)
|.....++|.+..+..+..++..+.+. .+.++|+.|+||||+|+.++....
T Consensus 12 P~~f~diiGq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~ 63 (486)
T PRK14953 12 PKFFKEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLN 63 (486)
T ss_pred CCcHHHccChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 345667899999999999998766654 457899999999999999988753
No 183
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=96.37 E-value=0.016 Score=66.24 Aligned_cols=51 Identities=22% Similarity=0.268 Sum_probs=43.2
Q ss_pred ccccccccchHHHHHHHHHHhccCCccE-EEEEcCCCChHHHHHHHHHHHhh
Q 047163 151 VKDFEAFDSKMEVFQDVMEALKDDKLNI-IGVYGMGGVGKTTLVKQVAKQVM 201 (658)
Q Consensus 151 ~~~~~~~~gr~~~~~~l~~~l~~~~~~v-i~I~G~gGiGKTtLa~~v~~~~~ 201 (658)
|.....++|.+..++.|..++..+++.. +.++|..|+||||+|+.+.+...
T Consensus 11 P~~f~eiiGqe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~ 62 (824)
T PRK07764 11 PATFAEVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLN 62 (824)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 3456678999999999999988766654 78999999999999999998874
No 184
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.35 E-value=0.3 Score=51.37 Aligned_cols=90 Identities=26% Similarity=0.213 Sum_probs=48.9
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCC-CCHHHHHHHHHHhcCCCCC---CCCCHHHHHHHHHH
Q 047163 175 KLNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQN-PDHHKIQDKLAFGLGMEFG---FNENMFQRASRLCE 250 (658)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~-~~~~~~~~~i~~~l~~~~~---~~~~~~~~~~~l~~ 250 (658)
...+|.++|..|+||||++..++.....+ .+ .+..|+.... +....-++...+..+.+.. ...+....+....+
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~-G~-kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~ 176 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRK-GF-KPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVE 176 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHC-CC-CEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHH
Confidence 46799999999999999999998877543 23 4445554321 1222222334444444322 11222333333333
Q ss_pred HHhcCCeEEEEEecCC
Q 047163 251 RLKKEKRLLIILDNIW 266 (658)
Q Consensus 251 ~l~~~k~~LlVlDdv~ 266 (658)
.++.+..=+||+|-.-
T Consensus 177 ~~~~~~~DvViIDTaG 192 (429)
T TIGR01425 177 KFKKENFDIIIVDTSG 192 (429)
T ss_pred HHHhCCCCEEEEECCC
Confidence 4443344567777654
No 185
>CHL00181 cbbX CbbX; Provisional
Probab=96.35 E-value=0.026 Score=56.54 Aligned_cols=24 Identities=29% Similarity=0.410 Sum_probs=21.5
Q ss_pred EEEEEcCCCChHHHHHHHHHHHhh
Q 047163 178 IIGVYGMGGVGKTTLVKQVAKQVM 201 (658)
Q Consensus 178 vi~I~G~gGiGKTtLa~~v~~~~~ 201 (658)
.+.++|.+|+||||+|+.+++...
T Consensus 61 ~ill~G~pGtGKT~lAr~la~~~~ 84 (287)
T CHL00181 61 HMSFTGSPGTGKTTVALKMADILY 84 (287)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999988764
No 186
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=96.34 E-value=0.0096 Score=60.17 Aligned_cols=29 Identities=28% Similarity=0.340 Sum_probs=25.5
Q ss_pred CCccEEEEEcCCCChHHHHHHHHHHHhhh
Q 047163 174 DKLNIIGVYGMGGVGKTTLVKQVAKQVME 202 (658)
Q Consensus 174 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 202 (658)
.-++.++|||++|.|||.+|+.+++....
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~elg~ 174 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKMGI 174 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHcCC
Confidence 34578999999999999999999999864
No 187
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.33 E-value=0.041 Score=56.53 Aligned_cols=89 Identities=18% Similarity=0.156 Sum_probs=48.3
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCCC-CHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHh
Q 047163 175 KLNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQNP-DHHKIQDKLAFGLGMEFGFNENMFQRASRLCERLK 253 (658)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 253 (658)
..++|+++|++|+||||++..++.....+ .+ .+..++..... ....-++.....++.+.....+..+.... .+.+.
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~-Gk-kVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~a-L~~lk 316 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGK-KK-TVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRA-LTYFK 316 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHc-CC-cEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHH-HHHHH
Confidence 45799999999999999999998876532 22 33445543221 12222233344455443322233333333 33333
Q ss_pred c-CCeEEEEEecCC
Q 047163 254 K-EKRLLIILDNIW 266 (658)
Q Consensus 254 ~-~k~~LlVlDdv~ 266 (658)
. .+.=+|++|-.-
T Consensus 317 ~~~~~DvVLIDTaG 330 (436)
T PRK11889 317 EEARVDYILIDTAG 330 (436)
T ss_pred hccCCCEEEEeCcc
Confidence 2 123577888764
No 188
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.33 E-value=0.016 Score=63.53 Aligned_cols=51 Identities=24% Similarity=0.278 Sum_probs=41.9
Q ss_pred ccccccccchHHHHHHHHHHhccCC-ccEEEEEcCCCChHHHHHHHHHHHhh
Q 047163 151 VKDFEAFDSKMEVFQDVMEALKDDK-LNIIGVYGMGGVGKTTLVKQVAKQVM 201 (658)
Q Consensus 151 ~~~~~~~~gr~~~~~~l~~~l~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (658)
|....+++|.+..++.|...+..+. ...+.++|+.|+||||+|+.+.+...
T Consensus 12 P~sf~dIiGQe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~ 63 (624)
T PRK14959 12 PQTFAEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALN 63 (624)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhcc
Confidence 3456678899998888888887665 45677899999999999999998774
No 189
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.32 E-value=0.005 Score=67.89 Aligned_cols=53 Identities=21% Similarity=0.272 Sum_probs=43.4
Q ss_pred CcccccccccchHHHHHHHHHHhcc-----CCccEEEEEcCCCChHHHHHHHHHHHhh
Q 047163 149 MQVKDFEAFDSKMEVFQDVMEALKD-----DKLNIIGVYGMGGVGKTTLVKQVAKQVM 201 (658)
Q Consensus 149 ~~~~~~~~~~gr~~~~~~l~~~l~~-----~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (658)
..|....+++|.++.++++..++.. ...+++.|+|+.|+||||+++.++....
T Consensus 78 yrP~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~ 135 (637)
T TIGR00602 78 YKPETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELG 135 (637)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4456778899999999999888863 2235799999999999999999998764
No 190
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.30 E-value=0.003 Score=60.07 Aligned_cols=109 Identities=20% Similarity=0.173 Sum_probs=66.9
Q ss_pred CceEEeccCCCCCcCCCccCCCCCceEEEecCCCCCC-ccchHHhcCCCCCcEEEccCCCCCCC--ccccccCCCcceEE
Q 047163 478 GPIAISLPHRDIQELPERLQCPNLQLFLFFGKGYGPM-QISDLFFEGTKELKDLSLTRIPFSSL--PSSLGSLINLGTLC 554 (658)
Q Consensus 478 ~~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~l--p~~i~~l~~L~~L~ 554 (658)
.+.++++.+..++.+.....+++|+.|.++.|..... .+.- ...++++|++|++++|.+..+ ...+..+.+|..|+
T Consensus 44 ~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~v-l~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ld 122 (260)
T KOG2739|consen 44 ELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEV-LAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLD 122 (260)
T ss_pred chhhhhhhccceeecccCCCcchhhhhcccCCccccccccee-hhhhCCceeEEeecCCccccccccchhhhhcchhhhh
Confidence 4455555566665555556788888888888732221 1111 134558888888888887632 12345667788888
Q ss_pred ccCCCCCCc-----hhhhccCCCcEEEccCccCCccch
Q 047163 555 LEDCPRNDI-----AILRQLKKLEILRLRHSYTERLPL 587 (658)
Q Consensus 555 L~~~~~~~l-----~~~~~l~~L~~L~l~~~~~~~lp~ 587 (658)
+..|....+ ..+.-+++|.+|+-....-.+.|.
T Consensus 123 l~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~~~Ea~~ 160 (260)
T KOG2739|consen 123 LFNCSVTNLDDYREKVFLLLPSLKYLDGCDVDGEEAPE 160 (260)
T ss_pred cccCCccccccHHHHHHHHhhhhccccccccCCccccc
Confidence 888876555 345556778877765554444443
No 191
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.29 E-value=0.011 Score=62.65 Aligned_cols=71 Identities=21% Similarity=0.246 Sum_probs=50.3
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhcC
Q 047163 176 LNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQNPDHHKIQDKLAFGLGMEFGFNENMFQRASRLCERLKKE 255 (658)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 255 (658)
..=|.+||++|+|||-||++|+|..... |+.|... .++..- ..+.+.....++++-+..
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANEag~N-------FisVKGP----ELlNkY----------VGESErAVR~vFqRAR~s 603 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANEAGAN-------FISVKGP----ELLNKY----------VGESERAVRQVFQRARAS 603 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhhccCc-------eEeecCH----HHHHHH----------hhhHHHHHHHHHHHhhcC
Confidence 3457899999999999999999998754 4555433 122111 122344567778888878
Q ss_pred CeEEEEEecCCc
Q 047163 256 KRLLIILDNIWI 267 (658)
Q Consensus 256 k~~LlVlDdv~~ 267 (658)
-.|.|.||.++.
T Consensus 604 aPCVIFFDEiDa 615 (802)
T KOG0733|consen 604 APCVIFFDEIDA 615 (802)
T ss_pred CCeEEEecchhh
Confidence 899999999973
No 192
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=96.25 E-value=0.02 Score=58.04 Aligned_cols=89 Identities=20% Similarity=0.203 Sum_probs=56.2
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHhhhc----cCCCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCC---------CCCHHH
Q 047163 177 NIIGVYGMGGVGKTTLVKQVAKQVMED----KLFDKVVMAEVTQNPDHHKIQDKLAFGLGMEFGF---------NENMFQ 243 (658)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~~~----~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~---------~~~~~~ 243 (658)
+++-|+|.+|+|||+|+.+++-..... ..=..++|++....++..++.+ +++.++..... ..+.++
T Consensus 97 ~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~-~a~~~g~d~~~~l~~i~~~~~~~~e~ 175 (313)
T TIGR02238 97 SITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRA-IAERFGVDPDAVLDNILYARAYTSEH 175 (313)
T ss_pred eEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHH-HHHHcCCChHHhcCcEEEecCCCHHH
Confidence 588899999999999999877543211 1124789999988888887754 45555543210 112222
Q ss_pred H---HHHHHHHHhcCCeEEEEEecCC
Q 047163 244 R---ASRLCERLKKEKRLLIILDNIW 266 (658)
Q Consensus 244 ~---~~~l~~~l~~~k~~LlVlDdv~ 266 (658)
. ...+...+..++--|||+|.+.
T Consensus 176 ~~~~l~~l~~~i~~~~~~LvVIDSis 201 (313)
T TIGR02238 176 QMELLDYLAAKFSEEPFRLLIVDSIM 201 (313)
T ss_pred HHHHHHHHHHHhhccCCCEEEEEcch
Confidence 2 2333334444456689999885
No 193
>PRK06547 hypothetical protein; Provisional
Probab=96.24 E-value=0.0067 Score=55.66 Aligned_cols=36 Identities=25% Similarity=0.250 Sum_probs=28.9
Q ss_pred HHHHHhccCCccEEEEEcCCCChHHHHHHHHHHHhh
Q 047163 166 DVMEALKDDKLNIIGVYGMGGVGKTTLVKQVAKQVM 201 (658)
Q Consensus 166 ~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (658)
.+...+......+|+|.|.+|+||||+|+.+.....
T Consensus 5 ~~~~~~~~~~~~~i~i~G~~GsGKTt~a~~l~~~~~ 40 (172)
T PRK06547 5 LIAARLCGGGMITVLIDGRSGSGKTTLAGALAARTG 40 (172)
T ss_pred HHHHHhhcCCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 344445566778999999999999999999998753
No 194
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=96.23 E-value=0.025 Score=56.84 Aligned_cols=86 Identities=17% Similarity=0.169 Sum_probs=55.0
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCCCCHHHHHHHHHHhcCCCCC-----CCCCHHHHHHHHHH
Q 047163 176 LNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQNPDHHKIQDKLAFGLGMEFG-----FNENMFQRASRLCE 250 (658)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~~ 250 (658)
-+++-|+|..|+||||||..+....... -..++|++....++... +..++.+.+ .+...++....+.+
T Consensus 53 G~ivEi~G~~ssGKttLaL~~ia~~q~~--g~~~a~ID~e~~ld~~~-----a~~lGvdl~rllv~~P~~~E~al~~~e~ 125 (322)
T PF00154_consen 53 GRIVEIYGPESSGKTTLALHAIAEAQKQ--GGICAFIDAEHALDPEY-----AESLGVDLDRLLVVQPDTGEQALWIAEQ 125 (322)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHT--T-EEEEEESSS---HHH-----HHHTT--GGGEEEEE-SSHHHHHHHHHH
T ss_pred CceEEEeCCCCCchhhhHHHHHHhhhcc--cceeEEecCcccchhhH-----HHhcCccccceEEecCCcHHHHHHHHHH
Confidence 3589999999999999999999876432 35688999987766643 334443322 13344555566666
Q ss_pred HHhcCCeEEEEEecCCcc
Q 047163 251 RLKKEKRLLIILDNIWIE 268 (658)
Q Consensus 251 ~l~~~k~~LlVlDdv~~~ 268 (658)
.++.+..-++|+|-|-..
T Consensus 126 lirsg~~~lVVvDSv~al 143 (322)
T PF00154_consen 126 LIRSGAVDLVVVDSVAAL 143 (322)
T ss_dssp HHHTTSESEEEEE-CTT-
T ss_pred HhhcccccEEEEecCccc
Confidence 677666679999988643
No 195
>CHL00176 ftsH cell division protein; Validated
Probab=96.21 E-value=0.015 Score=64.71 Aligned_cols=93 Identities=20% Similarity=0.266 Sum_probs=52.6
Q ss_pred cccccchHHHHHH---HHHHhccC---------CccEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCCCCHH
Q 047163 154 FEAFDSKMEVFQD---VMEALKDD---------KLNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQNPDHH 221 (658)
Q Consensus 154 ~~~~~gr~~~~~~---l~~~l~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~ 221 (658)
..++.|.++..++ +++++... ..+-|.++|++|+|||++|+.++...... ++.++..
T Consensus 182 f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p-------~i~is~s---- 250 (638)
T CHL00176 182 FRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVP-------FFSISGS---- 250 (638)
T ss_pred HHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCC-------eeeccHH----
Confidence 3445666655544 44444421 13468999999999999999998865321 2232211
Q ss_pred HHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhcCCeEEEEEecCCc
Q 047163 222 KIQDKLAFGLGMEFGFNENMFQRASRLCERLKKEKRLLIILDNIWI 267 (658)
Q Consensus 222 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~ 267 (658)
.+.... .+ ........+++.......++|++||++.
T Consensus 251 ~f~~~~---~g-------~~~~~vr~lF~~A~~~~P~ILfIDEID~ 286 (638)
T CHL00176 251 EFVEMF---VG-------VGAARVRDLFKKAKENSPCIVFIDEIDA 286 (638)
T ss_pred HHHHHh---hh-------hhHHHHHHHHHHHhcCCCcEEEEecchh
Confidence 111110 00 0112334444444456789999999974
No 196
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=96.19 E-value=0.035 Score=55.66 Aligned_cols=25 Identities=28% Similarity=0.387 Sum_probs=21.8
Q ss_pred EEEEEcCCCChHHHHHHHHHHHhhh
Q 047163 178 IIGVYGMGGVGKTTLVKQVAKQVME 202 (658)
Q Consensus 178 vi~I~G~gGiGKTtLa~~v~~~~~~ 202 (658)
-+.++|.+|+|||++|+.++.....
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~ 84 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHR 84 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 5789999999999999988877654
No 197
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.19 E-value=0.011 Score=64.07 Aligned_cols=73 Identities=23% Similarity=0.313 Sum_probs=52.2
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHh-c
Q 047163 176 LNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQNPDHHKIQDKLAFGLGMEFGFNENMFQRASRLCERLK-K 254 (658)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~-~ 254 (658)
-++..++|++|.||||||..++.+.. | .++=+++|+.-+...+-+.|...+..... +. .
T Consensus 326 kKilLL~GppGlGKTTLAHViAkqaG----Y-sVvEINASDeRt~~~v~~kI~~avq~~s~---------------l~ad 385 (877)
T KOG1969|consen 326 KKILLLCGPPGLGKTTLAHVIAKQAG----Y-SVVEINASDERTAPMVKEKIENAVQNHSV---------------LDAD 385 (877)
T ss_pred cceEEeecCCCCChhHHHHHHHHhcC----c-eEEEecccccccHHHHHHHHHHHHhhccc---------------cccC
Confidence 57899999999999999999998764 2 35667888888777777777655432211 10 1
Q ss_pred CCeEEEEEecCCcc
Q 047163 255 EKRLLIILDNIWIE 268 (658)
Q Consensus 255 ~k~~LlVlDdv~~~ 268 (658)
.+..-+|+|.++-.
T Consensus 386 srP~CLViDEIDGa 399 (877)
T KOG1969|consen 386 SRPVCLVIDEIDGA 399 (877)
T ss_pred CCcceEEEecccCC
Confidence 46677888888754
No 198
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=96.18 E-value=0.008 Score=58.33 Aligned_cols=29 Identities=28% Similarity=0.513 Sum_probs=26.0
Q ss_pred CCccEEEEEcCCCChHHHHHHHHHHHhhh
Q 047163 174 DKLNIIGVYGMGGVGKTTLVKQVAKQVME 202 (658)
Q Consensus 174 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 202 (658)
+...+|+|.|++|+|||||++.+......
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~~ 59 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQQ 59 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 55779999999999999999999988765
No 199
>PRK09087 hypothetical protein; Validated
Probab=96.17 E-value=0.02 Score=55.25 Aligned_cols=25 Identities=24% Similarity=0.252 Sum_probs=22.0
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHHh
Q 047163 176 LNIIGVYGMGGVGKTTLVKQVAKQV 200 (658)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~ 200 (658)
.+.+.|+|..|+|||+|++.++...
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~ 68 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKS 68 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhc
Confidence 4579999999999999999988764
No 200
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=96.14 E-value=0.041 Score=59.49 Aligned_cols=50 Identities=24% Similarity=0.354 Sum_probs=42.1
Q ss_pred ccccccccchHHHHHHHHHHhccCCcc-EEEEEcCCCChHHHHHHHHHHHh
Q 047163 151 VKDFEAFDSKMEVFQDVMEALKDDKLN-IIGVYGMGGVGKTTLVKQVAKQV 200 (658)
Q Consensus 151 ~~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~ 200 (658)
|.....++|.+...+.|...+..++.. .+.++|+.|+||||+|+.+.+..
T Consensus 10 P~~fdeiiGqe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L 60 (535)
T PRK08451 10 PKHFDELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARAL 60 (535)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHh
Confidence 345677899999999999988777665 55899999999999999998875
No 201
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.12 E-value=0.04 Score=55.67 Aligned_cols=90 Identities=17% Similarity=0.307 Sum_probs=55.6
Q ss_pred chHHHHHHHHHHhcc----CCccEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCCCCHHHHHHHHHHhcCCC
Q 047163 159 SKMEVFQDVMEALKD----DKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQNPDHHKIQDKLAFGLGME 234 (658)
Q Consensus 159 gr~~~~~~l~~~l~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~ 234 (658)
+|........+++.. ...+-+.|+|..|+|||.||..+++....+ .+. +.++.+ ..++.++-......
T Consensus 135 ~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~~~-g~~-v~~~~~------~~l~~~lk~~~~~~ 206 (306)
T PRK08939 135 DRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELAKK-GVS-STLLHF------PEFIRELKNSISDG 206 (306)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHHHc-CCC-EEEEEH------HHHHHHHHHHHhcC
Confidence 555555555555541 134578999999999999999999998742 233 445554 24555554443211
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCeEEEEEecCCc
Q 047163 235 FGFNENMFQRASRLCERLKKEKRLLIILDNIWI 267 (658)
Q Consensus 235 ~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~ 267 (658)
+ .....+.+. +-=||||||+..
T Consensus 207 -----~----~~~~l~~l~--~~dlLiIDDiG~ 228 (306)
T PRK08939 207 -----S----VKEKIDAVK--EAPVLMLDDIGA 228 (306)
T ss_pred -----c----HHHHHHHhc--CCCEEEEecCCC
Confidence 1 122334443 456999999963
No 202
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=96.10 E-value=0.017 Score=61.77 Aligned_cols=75 Identities=21% Similarity=0.374 Sum_probs=47.5
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHHhhhccCCC-EEEEEEEcCCCCHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhc
Q 047163 176 LNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFD-KVVMAEVTQNPDHHKIQDKLAFGLGMEFGFNENMFQRASRLCERLKK 254 (658)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 254 (658)
..-+.|+|..|+|||+|++.+++..... +.+ .++|++. .++..++...+... . .....+.+.
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~~~-~~~~~v~yi~~------~~f~~~~~~~~~~~-----~----~~~f~~~~~- 192 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQN-EPDLRVMYITS------EKFLNDLVDSMKEG-----K----LNEFREKYR- 192 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHh-CCCCeEEEEEH------HHHHHHHHHHHhcc-----c----HHHHHHHHH-
Confidence 4569999999999999999999987642 233 4567664 34455555444211 1 122333343
Q ss_pred CCeEEEEEecCCc
Q 047163 255 EKRLLIILDNIWI 267 (658)
Q Consensus 255 ~k~~LlVlDdv~~ 267 (658)
.+.-+|++||+..
T Consensus 193 ~~~dvLlIDDi~~ 205 (440)
T PRK14088 193 KKVDVLLIDDVQF 205 (440)
T ss_pred hcCCEEEEechhh
Confidence 2345888999974
No 203
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.10 E-value=0.038 Score=61.46 Aligned_cols=51 Identities=25% Similarity=0.349 Sum_probs=42.1
Q ss_pred ccccccccchHHHHHHHHHHhccCCcc-EEEEEcCCCChHHHHHHHHHHHhh
Q 047163 151 VKDFEAFDSKMEVFQDVMEALKDDKLN-IIGVYGMGGVGKTTLVKQVAKQVM 201 (658)
Q Consensus 151 ~~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~ 201 (658)
|.....++|.+..++.|..++..+.+. .+.++|..|+||||+|+.+.+...
T Consensus 12 P~~~~eiiGq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~ 63 (585)
T PRK14950 12 SQTFAELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVN 63 (585)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhc
Confidence 345667899999999998888766554 468999999999999999998764
No 204
>PRK07667 uridine kinase; Provisional
Probab=96.09 E-value=0.0091 Score=56.17 Aligned_cols=38 Identities=24% Similarity=0.524 Sum_probs=29.4
Q ss_pred HHHHHHhc--cCCccEEEEEcCCCChHHHHHHHHHHHhhh
Q 047163 165 QDVMEALK--DDKLNIIGVYGMGGVGKTTLVKQVAKQVME 202 (658)
Q Consensus 165 ~~l~~~l~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 202 (658)
+.|.+.+. .++..+|+|.|.+|+||||+|+.+......
T Consensus 4 ~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l~~ 43 (193)
T PRK07667 4 NELINIMKKHKENRFILGIDGLSRSGKTTFVANLKENMKQ 43 (193)
T ss_pred HHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 44455444 344579999999999999999999988753
No 205
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=96.08 E-value=0.046 Score=60.24 Aligned_cols=51 Identities=27% Similarity=0.330 Sum_probs=42.3
Q ss_pred ccccccccchHHHHHHHHHHhccCCcc-EEEEEcCCCChHHHHHHHHHHHhh
Q 047163 151 VKDFEAFDSKMEVFQDVMEALKDDKLN-IIGVYGMGGVGKTTLVKQVAKQVM 201 (658)
Q Consensus 151 ~~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~ 201 (658)
|.....++|.+...+.|..++..+... .+.++|+.|+||||+|+.+.....
T Consensus 12 P~~f~~viGq~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~ 63 (559)
T PRK05563 12 PQTFEDVVGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVN 63 (559)
T ss_pred CCcHHhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 456678899999999999998766554 467899999999999999987753
No 206
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.07 E-value=0.029 Score=55.90 Aligned_cols=93 Identities=26% Similarity=0.353 Sum_probs=62.4
Q ss_pred cccccchHHHHHHHHHHhc----c---------CCccEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCCCCH
Q 047163 154 FEAFDSKMEVFQDVMEALK----D---------DKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQNPDH 220 (658)
Q Consensus 154 ~~~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~ 220 (658)
..++=|-++.+++|.+... + ..++=|.++|++|.|||-||++|+++.... |+.|...
T Consensus 150 Y~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~At-------FIrvvgS--- 219 (406)
T COG1222 150 YEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDAT-------FIRVVGS--- 219 (406)
T ss_pred hhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCce-------EEEeccH---
Confidence 4445678888888877654 1 345668899999999999999999988653 3333222
Q ss_pred HHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhcCCeEEEEEecCCc
Q 047163 221 HKIQDKLAFGLGMEFGFNENMFQRASRLCERLKKEKRLLIILDNIWI 267 (658)
Q Consensus 221 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~ 267 (658)
++.++- +| +-.....++++.-+....+.|.+|.++.
T Consensus 220 -ElVqKY---iG-------EGaRlVRelF~lArekaPsIIFiDEIDA 255 (406)
T COG1222 220 -ELVQKY---IG-------EGARLVRELFELAREKAPSIIFIDEIDA 255 (406)
T ss_pred -HHHHHH---hc-------cchHHHHHHHHHHhhcCCeEEEEechhh
Confidence 222221 11 1134566777777767889999999863
No 207
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.07 E-value=0.042 Score=60.03 Aligned_cols=98 Identities=19% Similarity=0.276 Sum_probs=65.8
Q ss_pred cccccccccchHHHHHHHHHHhc---------cCCc---cEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCC
Q 047163 150 QVKDFEAFDSKMEVFQDVMEALK---------DDKL---NIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQN 217 (658)
Q Consensus 150 ~~~~~~~~~gr~~~~~~l~~~l~---------~~~~---~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~ 217 (658)
+.....++=|-++.+.+|.+-+. ..+. .=|.++|++|.|||-+||+|+....-. |++|..+
T Consensus 667 PnV~WdDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcsL~-------FlSVKGP 739 (953)
T KOG0736|consen 667 PNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECSLN-------FLSVKGP 739 (953)
T ss_pred CccchhcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhceee-------EEeecCH
Confidence 33445566678888888887664 2233 246789999999999999999766532 4555433
Q ss_pred CCHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhcCCeEEEEEecCCcc
Q 047163 218 PDHHKIQDKLAFGLGMEFGFNENMFQRASRLCERLKKEKRLLIILDNIWIE 268 (658)
Q Consensus 218 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~ 268 (658)
+++..- + ...++..++++++-++-+.|.|.||++++.
T Consensus 740 ----ELLNMY---V-------GqSE~NVR~VFerAR~A~PCVIFFDELDSl 776 (953)
T KOG0736|consen 740 ----ELLNMY---V-------GQSEENVREVFERARSAAPCVIFFDELDSL 776 (953)
T ss_pred ----HHHHHH---h-------cchHHHHHHHHHHhhccCCeEEEecccccc
Confidence 222211 1 122456677888888789999999999753
No 208
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.07 E-value=0.053 Score=55.58 Aligned_cols=101 Identities=25% Similarity=0.276 Sum_probs=55.2
Q ss_pred HHHHHHHHHhccC----CccEEEEEcCCCChHH-HHHHHHHHHhhhccCCCEEEEEEEcCC-CCHHHHHHHHHHhcCCCC
Q 047163 162 EVFQDVMEALKDD----KLNIIGVYGMGGVGKT-TLVKQVAKQVMEDKLFDKVVMAEVTQN-PDHHKIQDKLAFGLGMEF 235 (658)
Q Consensus 162 ~~~~~l~~~l~~~----~~~vi~I~G~gGiGKT-tLa~~v~~~~~~~~~F~~~~wv~v~~~-~~~~~~~~~i~~~l~~~~ 235 (658)
+....+..++.++ +-++|.+||+.|+||| |||+..+.-....+ =..+..++...- -....=++.-++.++.+.
T Consensus 185 ~~l~~~~~~~~~~~~~~~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~-~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~ 263 (407)
T COG1419 185 EKLRKLLLSLIENLIVEQKRVIALVGPTGVGKTTTLAKLAARYVMLKK-KKKVAIITTDTYRIGAVEQLKTYADIMGVPL 263 (407)
T ss_pred HHHHHHHHhhccccccccCcEEEEECCCCCcHHHHHHHHHHHHHhhcc-CcceEEEEeccchhhHHHHHHHHHHHhCCce
Confidence 3344455555433 3689999999999998 56666655542211 234555554321 133333445566677776
Q ss_pred CCCCCHHHHHHHHHHHHhcCCeEEEEEecCC
Q 047163 236 GFNENMFQRASRLCERLKKEKRLLIILDNIW 266 (658)
Q Consensus 236 ~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~ 266 (658)
....+..+....+ ..+. + +=+|.+|-+.
T Consensus 264 ~vv~~~~el~~ai-~~l~-~-~d~ILVDTaG 291 (407)
T COG1419 264 EVVYSPKELAEAI-EALR-D-CDVILVDTAG 291 (407)
T ss_pred EEecCHHHHHHHH-HHhh-c-CCEEEEeCCC
Confidence 5444444444443 3343 2 3466667654
No 209
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.05 E-value=0.008 Score=64.34 Aligned_cols=49 Identities=22% Similarity=0.423 Sum_probs=42.1
Q ss_pred cccccchHHHHHHHHHHhc------cCCccEEEEEcCCCChHHHHHHHHHHHhhh
Q 047163 154 FEAFDSKMEVFQDVMEALK------DDKLNIIGVYGMGGVGKTTLVKQVAKQVME 202 (658)
Q Consensus 154 ~~~~~gr~~~~~~l~~~l~------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 202 (658)
..+++|.++.++.|++.|. ...-+++.++|++|+||||||+.+.+-...
T Consensus 75 F~d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le~ 129 (644)
T PRK15455 75 FEEFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLMER 129 (644)
T ss_pred hhcccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHHh
Confidence 3357899999999999983 455679999999999999999999997754
No 210
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=96.05 E-value=0.05 Score=50.97 Aligned_cols=36 Identities=31% Similarity=0.384 Sum_probs=28.1
Q ss_pred HHHHhccCCc-cEEEEEcCCCChHHHHHHHHHHHhhh
Q 047163 167 VMEALKDDKL-NIIGVYGMGGVGKTTLVKQVAKQVME 202 (658)
Q Consensus 167 l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~ 202 (658)
+.+.+..+++ ..+.++|+.|+||||+|+.+......
T Consensus 4 l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~ 40 (188)
T TIGR00678 4 LKRALEKGRLAHAYLFAGPEGVGKELLALALAKALLC 40 (188)
T ss_pred HHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHcC
Confidence 4455555555 56889999999999999999888643
No 211
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.04 E-value=0.031 Score=61.87 Aligned_cols=51 Identities=22% Similarity=0.340 Sum_probs=42.9
Q ss_pred ccccccccchHHHHHHHHHHhccCCcc-EEEEEcCCCChHHHHHHHHHHHhh
Q 047163 151 VKDFEAFDSKMEVFQDVMEALKDDKLN-IIGVYGMGGVGKTTLVKQVAKQVM 201 (658)
Q Consensus 151 ~~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~ 201 (658)
|.....++|.+..++.|..++..+++. .+.++|+.|+||||+|+.+.+...
T Consensus 12 P~~f~~iiGq~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~ 63 (576)
T PRK14965 12 PQTFSDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALN 63 (576)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhc
Confidence 355677899999999999998877665 468999999999999999998764
No 212
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.04 E-value=0.0094 Score=52.38 Aligned_cols=31 Identities=39% Similarity=0.499 Sum_probs=26.1
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHHhhhccCCC
Q 047163 176 LNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFD 207 (658)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~ 207 (658)
..-|+|.|++|+||||+++.+.+..+.+. |.
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~~~g-~k 35 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLREKG-YK 35 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHhcC-ce
Confidence 34689999999999999999999987643 54
No 213
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=96.02 E-value=0.036 Score=60.84 Aligned_cols=51 Identities=22% Similarity=0.367 Sum_probs=43.2
Q ss_pred ccccccccchHHHHHHHHHHhccCCcc-EEEEEcCCCChHHHHHHHHHHHhh
Q 047163 151 VKDFEAFDSKMEVFQDVMEALKDDKLN-IIGVYGMGGVGKTTLVKQVAKQVM 201 (658)
Q Consensus 151 ~~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~ 201 (658)
|.....++|.+..++.|..++..+... .+.++|+.|+||||+|+.+++...
T Consensus 12 P~~f~diiGqe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~ 63 (563)
T PRK06647 12 PRDFNSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLN 63 (563)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhc
Confidence 355677899999999999998866655 578999999999999999998764
No 214
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=96.01 E-value=0.015 Score=62.95 Aligned_cols=65 Identities=25% Similarity=0.293 Sum_probs=49.2
Q ss_pred cccccchHHHHHHHHHHhc------cCCccEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCCCCHHHH
Q 047163 154 FEAFDSKMEVFQDVMEALK------DDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQNPDHHKI 223 (658)
Q Consensus 154 ~~~~~gr~~~~~~l~~~l~------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~ 223 (658)
.++..|.++.++.|++++. +.+-++++.+|++|+|||.+|+.++....-+ | +-++|+.-.+..+|
T Consensus 410 deDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRk--F---fRfSvGG~tDvAeI 480 (906)
T KOG2004|consen 410 DEDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRK--F---FRFSVGGMTDVAEI 480 (906)
T ss_pred cccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCc--e---EEEeccccccHHhh
Confidence 4556799999999999985 3345799999999999999999999887532 3 34566655555433
No 215
>PRK14974 cell division protein FtsY; Provisional
Probab=96.01 E-value=0.093 Score=53.54 Aligned_cols=90 Identities=22% Similarity=0.180 Sum_probs=49.3
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCCC--CHHHHHHHHHHhcCCCCCC---CCCHHHHHHHHH
Q 047163 175 KLNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQNP--DHHKIQDKLAFGLGMEFGF---NENMFQRASRLC 249 (658)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~--~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~l~ 249 (658)
...+|.++|++|+||||++..++...... .+ .++.++. +.+ ....-++.....++.+... ..+....+....
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~-g~-~V~li~~-Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai 215 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKN-GF-SVVIAAG-DTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAI 215 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHc-CC-eEEEecC-CcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHH
Confidence 46799999999999999998888776542 23 3334432 222 2223344556666654321 112222222222
Q ss_pred HHHhcCCeEEEEEecCCc
Q 047163 250 ERLKKEKRLLIILDNIWI 267 (658)
Q Consensus 250 ~~l~~~k~~LlVlDdv~~ 267 (658)
+.......-+|++|-.-.
T Consensus 216 ~~~~~~~~DvVLIDTaGr 233 (336)
T PRK14974 216 EHAKARGIDVVLIDTAGR 233 (336)
T ss_pred HHHHhCCCCEEEEECCCc
Confidence 222222234899998753
No 216
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.00 E-value=0.047 Score=60.72 Aligned_cols=51 Identities=20% Similarity=0.287 Sum_probs=42.6
Q ss_pred ccccccccchHHHHHHHHHHhccCCc-cEEEEEcCCCChHHHHHHHHHHHhh
Q 047163 151 VKDFEAFDSKMEVFQDVMEALKDDKL-NIIGVYGMGGVGKTTLVKQVAKQVM 201 (658)
Q Consensus 151 ~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (658)
|.....++|.+..+..|..++..+.. ..+.++|..|+||||+|+.+++...
T Consensus 12 P~~f~~liGq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~ 63 (620)
T PRK14948 12 PQRFDELVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLN 63 (620)
T ss_pred CCcHhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhc
Confidence 34566789999999999988876553 5678999999999999999998864
No 217
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=95.99 E-value=0.0064 Score=57.33 Aligned_cols=25 Identities=48% Similarity=0.719 Sum_probs=23.4
Q ss_pred EEEEEcCCCChHHHHHHHHHHHhhh
Q 047163 178 IIGVYGMGGVGKTTLVKQVAKQVME 202 (658)
Q Consensus 178 vi~I~G~gGiGKTtLa~~v~~~~~~ 202 (658)
||+|.|.+|+||||+|+.+......
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~ 25 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNK 25 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTT
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCc
Confidence 7999999999999999999998864
No 218
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=95.98 E-value=0.026 Score=64.58 Aligned_cols=104 Identities=21% Similarity=0.282 Sum_probs=60.5
Q ss_pred cccccchHHHHHHHHHHhcc-------C--CccEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCCCCHHHHH
Q 047163 154 FEAFDSKMEVFQDVMEALKD-------D--KLNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQNPDHHKIQ 224 (658)
Q Consensus 154 ~~~~~gr~~~~~~l~~~l~~-------~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~ 224 (658)
...++|.+..++.+.+.+.. . ...++.++|+.|+|||+||+.++.... ...+.++.++-.+...
T Consensus 453 ~~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~-----~~~~~~d~se~~~~~~-- 525 (731)
T TIGR02639 453 KAKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALG-----VHLERFDMSEYMEKHT-- 525 (731)
T ss_pred hcceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhc-----CCeEEEeCchhhhccc--
Confidence 34567888888888777651 1 134678999999999999999998762 3345555544322111
Q ss_pred HHHHHhcCCCCCCCCCHHHHHHHHHHHHhcCCeEEEEEecCCcc
Q 047163 225 DKLAFGLGMEFGFNENMFQRASRLCERLKKEKRLLIILDNIWIE 268 (658)
Q Consensus 225 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~ 268 (658)
+...++.+.. ... .+....+.+.++....-+++||+++..
T Consensus 526 --~~~lig~~~g-yvg-~~~~~~l~~~~~~~p~~VvllDEieka 565 (731)
T TIGR02639 526 --VSRLIGAPPG-YVG-FEQGGLLTEAVRKHPHCVLLLDEIEKA 565 (731)
T ss_pred --HHHHhcCCCC-Ccc-cchhhHHHHHHHhCCCeEEEEechhhc
Confidence 1112222211 111 111233445555445569999999754
No 219
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.98 E-value=0.0061 Score=52.97 Aligned_cols=22 Identities=45% Similarity=0.851 Sum_probs=20.6
Q ss_pred EEEEcCCCChHHHHHHHHHHHh
Q 047163 179 IGVYGMGGVGKTTLVKQVAKQV 200 (658)
Q Consensus 179 i~I~G~gGiGKTtLa~~v~~~~ 200 (658)
|+|.|..|+||||+|+.+....
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999885
No 220
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.97 E-value=0.046 Score=50.38 Aligned_cols=25 Identities=36% Similarity=0.514 Sum_probs=22.5
Q ss_pred EEEEEcCCCChHHHHHHHHHHHhhh
Q 047163 178 IIGVYGMGGVGKTTLVKQVAKQVME 202 (658)
Q Consensus 178 vi~I~G~gGiGKTtLa~~v~~~~~~ 202 (658)
++.++|++|+||||++..++.....
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~ 26 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKK 26 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 6889999999999999999987764
No 221
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=95.97 E-value=0.0098 Score=66.18 Aligned_cols=102 Identities=20% Similarity=0.333 Sum_probs=64.6
Q ss_pred cccccchHHHHHHHHHHhccCCccEEEEEcCCCChHHHHHHHHHHHhhhccCCC----EEEEEEEcCCCCHHHHHHHHHH
Q 047163 154 FEAFDSKMEVFQDVMEALKDDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFD----KVVMAEVTQNPDHHKIQDKLAF 229 (658)
Q Consensus 154 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~----~~~wv~v~~~~~~~~~~~~i~~ 229 (658)
...++||+++++.+++.|....-.--.++|.+|+|||+++.-++.+...++-.. ..++ +. ++. .+..
T Consensus 169 lDPvIGRd~EI~r~iqIL~RR~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~-sL----D~g----~LvA 239 (786)
T COG0542 169 LDPVIGRDEEIRRTIQILSRRTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIY-SL----DLG----SLVA 239 (786)
T ss_pred CCCCcChHHHHHHHHHHHhccCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEE-Ee----cHH----HHhc
Confidence 456799999999999999743322345789999999999999999876542111 1111 11 111 1111
Q ss_pred hcCCCCCCCCCHHHHHHHHHHHHhcCCeEEEEEecCCcc
Q 047163 230 GLGMEFGFNENMFQRASRLCERLKKEKRLLIILDNIWIE 268 (658)
Q Consensus 230 ~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~ 268 (658)
. .. ...+.++....+.+.+++.++..+.+|.+.+.
T Consensus 240 G---ak-yRGeFEeRlk~vl~ev~~~~~vILFIDEiHti 274 (786)
T COG0542 240 G---AK-YRGEFEERLKAVLKEVEKSKNVILFIDEIHTI 274 (786)
T ss_pred c---cc-ccCcHHHHHHHHHHHHhcCCCeEEEEechhhh
Confidence 1 11 12345666667777776556899999998643
No 222
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=95.96 E-value=0.044 Score=53.93 Aligned_cols=89 Identities=27% Similarity=0.290 Sum_probs=55.4
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHhhhcc----CCCEEEEEEEcCCCCHHHHHHHHHHhcCCCCC---------CCCCHHH
Q 047163 177 NIIGVYGMGGVGKTTLVKQVAKQVMEDK----LFDKVVMAEVTQNPDHHKIQDKLAFGLGMEFG---------FNENMFQ 243 (658)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~---------~~~~~~~ 243 (658)
.+.=|+|.+|+|||+|+.+++-...... .=..++|++-...++..++.+ |++..+.... ...+..+
T Consensus 39 ~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~~-i~~~~~~~~~~~l~~I~v~~~~~~~~ 117 (256)
T PF08423_consen 39 SITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQQ-IAERFGLDPEEILDNIFVIRVFDLEE 117 (256)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHHH-HHHHTTS-HHHHHHTEEEEE-SSHHH
T ss_pred cEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHHH-HhhccccccchhhhceeeeecCCHHH
Confidence 4788999999999999998876543211 123689999988888877654 5554432210 0112222
Q ss_pred ---HHHHHHHHHhcCCeEEEEEecCC
Q 047163 244 ---RASRLCERLKKEKRLLIILDNIW 266 (658)
Q Consensus 244 ---~~~~l~~~l~~~k~~LlVlDdv~ 266 (658)
....+...+..++--|||+|.+-
T Consensus 118 l~~~L~~l~~~l~~~~ikLIVIDSIa 143 (256)
T PF08423_consen 118 LLELLEQLPKLLSESKIKLIVIDSIA 143 (256)
T ss_dssp HHHHHHHHHHHHHHSCEEEEEEETSS
T ss_pred HHHHHHHHHhhccccceEEEEecchH
Confidence 23333344444566799999985
No 223
>PRK13531 regulatory ATPase RavA; Provisional
Probab=95.96 E-value=0.011 Score=62.26 Aligned_cols=51 Identities=10% Similarity=0.213 Sum_probs=41.2
Q ss_pred ccccchHHHHHHHHHHhccCCccEEEEEcCCCChHHHHHHHHHHHhhhccCCC
Q 047163 155 EAFDSKMEVFQDVMEALKDDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFD 207 (658)
Q Consensus 155 ~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~ 207 (658)
..++||++.++.+...+..++ -|.|.|++|+|||++|+.+.........|.
T Consensus 20 ~~i~gre~vI~lll~aalag~--hVLL~GpPGTGKT~LAraLa~~~~~~~~F~ 70 (498)
T PRK13531 20 KGLYERSHAIRLCLLAALSGE--SVFLLGPPGIAKSLIARRLKFAFQNARAFE 70 (498)
T ss_pred hhccCcHHHHHHHHHHHccCC--CEEEECCCChhHHHHHHHHHHHhcccCcce
Confidence 347899999999988877555 689999999999999999998765433444
No 224
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=95.96 E-value=0.04 Score=58.98 Aligned_cols=50 Identities=26% Similarity=0.319 Sum_probs=42.3
Q ss_pred cccccccchHHHHHHHHHHhccCCc-cEEEEEcCCCChHHHHHHHHHHHhh
Q 047163 152 KDFEAFDSKMEVFQDVMEALKDDKL-NIIGVYGMGGVGKTTLVKQVAKQVM 201 (658)
Q Consensus 152 ~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (658)
....+++|.+..++.+..++..+.. ..+.++|+.|+||||+|+.+.+...
T Consensus 14 ~~~~diiGq~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~ 64 (451)
T PRK06305 14 QTFSEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALN 64 (451)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 4566789999999999998876665 4578999999999999999988763
No 225
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=95.96 E-value=0.047 Score=57.79 Aligned_cols=88 Identities=25% Similarity=0.280 Sum_probs=52.6
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCC-CCHHHHHHHHHHhcCCCCCCC---CCHHHHHHHHHH
Q 047163 175 KLNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQN-PDHHKIQDKLAFGLGMEFGFN---ENMFQRASRLCE 250 (658)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~-~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~l~~ 250 (658)
...+|.++|.+|+||||.|..++...... .+ .+..+++... +...+-++.+...++.+.... .+....+....+
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~-g~-kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~ 171 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKK-GL-KVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLE 171 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHc-CC-eEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHH
Confidence 46799999999999999999999887643 23 3444444321 223344556666666543311 222333334444
Q ss_pred HHhcCCeEEEEEecCC
Q 047163 251 RLKKEKRLLIILDNIW 266 (658)
Q Consensus 251 ~l~~~k~~LlVlDdv~ 266 (658)
.+. +. -+||+|..-
T Consensus 172 ~~~-~~-DvVIIDTAG 185 (437)
T PRK00771 172 KFK-KA-DVIIVDTAG 185 (437)
T ss_pred Hhh-cC-CEEEEECCC
Confidence 444 23 578899874
No 226
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=95.94 E-value=0.022 Score=54.08 Aligned_cols=93 Identities=20% Similarity=0.295 Sum_probs=59.9
Q ss_pred ccccccchHHHHHH---HHHHhccC------CccEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCCCCHHHH
Q 047163 153 DFEAFDSKMEVFQD---VMEALKDD------KLNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQNPDHHKI 223 (658)
Q Consensus 153 ~~~~~~gr~~~~~~---l~~~l~~~------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~ 223 (658)
...+++|.++...+ |+++|.+. .++-|..+|++|.|||.+|+.+++..++- | +.+. ..++
T Consensus 119 t~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp--~-----l~vk----at~l 187 (368)
T COG1223 119 TLDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVP--L-----LLVK----ATEL 187 (368)
T ss_pred cHhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCCc--e-----EEec----hHHH
Confidence 35667888776543 67777632 36789999999999999999999988652 2 2221 1111
Q ss_pred HHHHHHhcCCCCCCCCCHHHHHHHHHHHHhcCCeEEEEEecCC
Q 047163 224 QDKLAFGLGMEFGFNENMFQRASRLCERLKKEKRLLIILDNIW 266 (658)
Q Consensus 224 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~ 266 (658)
|-+.. .+-...+.++.++-+.--.|.+.+|.++
T Consensus 188 ---iGehV-------Gdgar~Ihely~rA~~~aPcivFiDE~D 220 (368)
T COG1223 188 ---IGEHV-------GDGARRIHELYERARKAAPCIVFIDELD 220 (368)
T ss_pred ---HHHHh-------hhHHHHHHHHHHHHHhcCCeEEEehhhh
Confidence 11111 1223345556665555578999999986
No 227
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=95.92 E-value=0.025 Score=64.96 Aligned_cols=50 Identities=26% Similarity=0.345 Sum_probs=38.5
Q ss_pred cccccccchHHHHHHHHHHhc----c---------CCccEEEEEcCCCChHHHHHHHHHHHhh
Q 047163 152 KDFEAFDSKMEVFQDVMEALK----D---------DKLNIIGVYGMGGVGKTTLVKQVAKQVM 201 (658)
Q Consensus 152 ~~~~~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (658)
....++.|.+..++.+.+.+. . ...+-|.++|++|+|||+||+.+++...
T Consensus 175 ~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~ 237 (733)
T TIGR01243 175 VTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAG 237 (733)
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhC
Confidence 345567899998888877653 1 2235688999999999999999998764
No 228
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=95.90 E-value=0.017 Score=53.34 Aligned_cols=73 Identities=26% Similarity=0.377 Sum_probs=44.2
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhcC
Q 047163 176 LNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQNPDHHKIQDKLAFGLGMEFGFNENMFQRASRLCERLKKE 255 (658)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 255 (658)
..-+.|+|..|+|||.||..+.+..... .+ .+.|++ ..+++..+-..- . ... ...+.+.+.
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~-g~-~v~f~~------~~~L~~~l~~~~----~-~~~----~~~~~~~l~-- 107 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRK-GY-SVLFIT------ASDLLDELKQSR----S-DGS----YEELLKRLK-- 107 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHT-T---EEEEE------HHHHHHHHHCCH----C-CTT----HCHHHHHHH--
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccC-Cc-ceeEee------cCceeccccccc----c-ccc----hhhhcCccc--
Confidence 3569999999999999999999887652 22 345555 345555553221 1 111 122344554
Q ss_pred CeEEEEEecCCc
Q 047163 256 KRLLIILDNIWI 267 (658)
Q Consensus 256 k~~LlVlDdv~~ 267 (658)
+-=|+||||+..
T Consensus 108 ~~dlLilDDlG~ 119 (178)
T PF01695_consen 108 RVDLLILDDLGY 119 (178)
T ss_dssp TSSCEEEETCTS
T ss_pred cccEecccccce
Confidence 345888999863
No 229
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=95.87 E-value=0.044 Score=61.13 Aligned_cols=50 Identities=24% Similarity=0.363 Sum_probs=41.8
Q ss_pred ccccccccchHHHHHHHHHHhccCCcc-EEEEEcCCCChHHHHHHHHHHHh
Q 047163 151 VKDFEAFDSKMEVFQDVMEALKDDKLN-IIGVYGMGGVGKTTLVKQVAKQV 200 (658)
Q Consensus 151 ~~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~ 200 (658)
|.....++|.+..++.|...+..+++. .+.++|+.|+||||+|+.++...
T Consensus 14 P~~f~dIiGQe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~L 64 (725)
T PRK07133 14 PKTFDDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANAL 64 (725)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHh
Confidence 345677899999999999998766654 56799999999999999998775
No 230
>PRK05642 DNA replication initiation factor; Validated
Probab=95.84 E-value=0.047 Score=53.06 Aligned_cols=36 Identities=19% Similarity=0.393 Sum_probs=28.3
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEE
Q 047163 177 NIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEV 214 (658)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v 214 (658)
+.+.|+|..|+|||.|++.+++....+ -..++|++.
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~--~~~v~y~~~ 81 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQR--GEPAVYLPL 81 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhC--CCcEEEeeH
Confidence 578999999999999999999876532 235667664
No 231
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=95.83 E-value=0.036 Score=50.32 Aligned_cols=24 Identities=42% Similarity=0.542 Sum_probs=22.2
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHh
Q 047163 177 NIIGVYGMGGVGKTTLVKQVAKQV 200 (658)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~ 200 (658)
.++.|.|++|+|||||++.+..+.
T Consensus 5 ~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 5 LLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhc
Confidence 578999999999999999999877
No 232
>PRK05480 uridine/cytidine kinase; Provisional
Probab=95.83 E-value=0.0085 Score=57.25 Aligned_cols=27 Identities=37% Similarity=0.564 Sum_probs=24.3
Q ss_pred CCccEEEEEcCCCChHHHHHHHHHHHh
Q 047163 174 DKLNIIGVYGMGGVGKTTLVKQVAKQV 200 (658)
Q Consensus 174 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 200 (658)
.+..+|+|.|.+|+||||||+.++...
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 456799999999999999999999876
No 233
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=95.83 E-value=0.029 Score=59.57 Aligned_cols=75 Identities=24% Similarity=0.415 Sum_probs=46.1
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhcC
Q 047163 176 LNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQNPDHHKIQDKLAFGLGMEFGFNENMFQRASRLCERLKKE 255 (658)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 255 (658)
...+.|+|..|+|||+|++.+++....+..=..+++++. .++...+...+... ....+.+.++
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~------~~~~~~~~~~~~~~---------~~~~~~~~~~-- 198 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSS------EKFTNDFVNALRNN---------KMEEFKEKYR-- 198 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEH------HHHHHHHHHHHHcC---------CHHHHHHHHH--
Confidence 356899999999999999999998765311124556653 23334444443211 1223344444
Q ss_pred CeEEEEEecCCc
Q 047163 256 KRLLIILDNIWI 267 (658)
Q Consensus 256 k~~LlVlDdv~~ 267 (658)
+.-+|||||+..
T Consensus 199 ~~dlLiiDDi~~ 210 (405)
T TIGR00362 199 SVDLLLIDDIQF 210 (405)
T ss_pred hCCEEEEehhhh
Confidence 234888999974
No 234
>PRK06526 transposase; Provisional
Probab=95.82 E-value=0.021 Score=55.97 Aligned_cols=27 Identities=22% Similarity=0.257 Sum_probs=23.5
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHHhhh
Q 047163 176 LNIIGVYGMGGVGKTTLVKQVAKQVME 202 (658)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~ 202 (658)
..-+.|+|++|+|||+||..+......
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~ 124 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQ 124 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHH
Confidence 346899999999999999999987754
No 235
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=95.80 E-value=0.065 Score=45.57 Aligned_cols=45 Identities=20% Similarity=0.299 Sum_probs=32.6
Q ss_pred cccchHHHHHHHHHHhc-------cCCccEEEEEcCCCChHHHHHHHHHHHh
Q 047163 156 AFDSKMEVFQDVMEALK-------DDKLNIIGVYGMGGVGKTTLVKQVAKQV 200 (658)
Q Consensus 156 ~~~gr~~~~~~l~~~l~-------~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 200 (658)
.++|..-..+.+++.+. ...+-|++.+|+.|+|||.+++.+++..
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 35565555555554443 2455689999999999999999999884
No 236
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.80 E-value=0.0082 Score=45.69 Aligned_cols=23 Identities=43% Similarity=0.712 Sum_probs=21.1
Q ss_pred EEEEEcCCCChHHHHHHHHHHHh
Q 047163 178 IIGVYGMGGVGKTTLVKQVAKQV 200 (658)
Q Consensus 178 vi~I~G~gGiGKTtLa~~v~~~~ 200 (658)
+|+|.|..|+||||+++.+.+..
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999885
No 237
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=95.80 E-value=0.039 Score=53.05 Aligned_cols=42 Identities=26% Similarity=0.306 Sum_probs=32.1
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCCCC
Q 047163 176 LNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQNPD 219 (658)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~ 219 (658)
-.++.|.|.+|+||||+|.+++...... -..++|++....+.
T Consensus 19 g~i~~i~G~~GsGKT~l~~~~a~~~~~~--g~~v~yi~~e~~~~ 60 (218)
T cd01394 19 GTVTQVYGPPGTGKTNIAIQLAVETAGQ--GKKVAYIDTEGLSS 60 (218)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEECCCCCH
Confidence 3588999999999999999998876532 34677887655543
No 238
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=95.80 E-value=0.12 Score=54.70 Aligned_cols=91 Identities=21% Similarity=0.185 Sum_probs=50.9
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCC-CCHHHHHHHHHHhcCCCCCC---CCCHHHHHHHHHH
Q 047163 175 KLNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQN-PDHHKIQDKLAFGLGMEFGF---NENMFQRASRLCE 250 (658)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~-~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~l~~ 250 (658)
.+.++.++|.+|+||||.|..++.....+..+ .+..+++... +....-++......+.+... ..+..+......+
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~-kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al~ 176 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYLKKKQGK-KVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRALE 176 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHhCCC-eEEEEeccccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHH
Confidence 36799999999999999999998876422212 3445554322 12223334445555544221 1233344444444
Q ss_pred HHhcCCeEEEEEecCC
Q 047163 251 RLKKEKRLLIILDNIW 266 (658)
Q Consensus 251 ~l~~~k~~LlVlDdv~ 266 (658)
.......=+||+|-.-
T Consensus 177 ~~~~~~~DvVIIDTaG 192 (428)
T TIGR00959 177 YAKENGFDVVIVDTAG 192 (428)
T ss_pred HHHhcCCCEEEEeCCC
Confidence 4443233388888764
No 239
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=95.80 E-value=0.034 Score=59.96 Aligned_cols=75 Identities=23% Similarity=0.366 Sum_probs=45.9
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhcC
Q 047163 176 LNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQNPDHHKIQDKLAFGLGMEFGFNENMFQRASRLCERLKKE 255 (658)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 255 (658)
...+.|+|..|+|||+|++.+++.......-..+++++.. .+...+...+... ....+.+.++
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~------~~~~~~~~~~~~~---------~~~~~~~~~~-- 210 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSE------KFTNDFVNALRNN---------TMEEFKEKYR-- 210 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHH------HHHHHHHHHHHcC---------cHHHHHHHHh--
Confidence 3568999999999999999999998653212245566543 2333333333211 1133444454
Q ss_pred CeEEEEEecCCc
Q 047163 256 KRLLIILDNIWI 267 (658)
Q Consensus 256 k~~LlVlDdv~~ 267 (658)
+.-+|||||+..
T Consensus 211 ~~dlLiiDDi~~ 222 (450)
T PRK00149 211 SVDVLLIDDIQF 222 (450)
T ss_pred cCCEEEEehhhh
Confidence 345888999964
No 240
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=95.78 E-value=0.013 Score=51.45 Aligned_cols=45 Identities=27% Similarity=0.445 Sum_probs=34.7
Q ss_pred EEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCCCCHHHHHHHHHHhcCCCC
Q 047163 178 IIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQNPDHHKIQDKLAFGLGMEF 235 (658)
Q Consensus 178 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~ 235 (658)
+|.|.|++|+||||+|+.+.++..-. .+ +.-.++++|+...+.+.
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~-------~v------saG~iFR~~A~e~gmsl 46 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLK-------LV------SAGTIFREMARERGMSL 46 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCc-------ee------eccHHHHHHHHHcCCCH
Confidence 78999999999999999999987532 11 23467788888777653
No 241
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=95.77 E-value=0.031 Score=64.40 Aligned_cols=47 Identities=34% Similarity=0.359 Sum_probs=37.8
Q ss_pred ccccchHHHHHHHHHHhc------cCCccEEEEEcCCCChHHHHHHHHHHHhh
Q 047163 155 EAFDSKMEVFQDVMEALK------DDKLNIIGVYGMGGVGKTTLVKQVAKQVM 201 (658)
Q Consensus 155 ~~~~gr~~~~~~l~~~l~------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (658)
..++|.++.++.|.+++. ....+++.++|++|+|||++|+.+++...
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~ 372 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALN 372 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence 346788888888888664 12345899999999999999999998874
No 242
>PRK08233 hypothetical protein; Provisional
Probab=95.77 E-value=0.0085 Score=55.80 Aligned_cols=26 Identities=31% Similarity=0.507 Sum_probs=23.2
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHHhh
Q 047163 176 LNIIGVYGMGGVGKTTLVKQVAKQVM 201 (658)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (658)
..+|+|.|.+|+||||+|+.+.....
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCC
Confidence 46899999999999999999998763
No 243
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=95.75 E-value=0.058 Score=55.14 Aligned_cols=89 Identities=19% Similarity=0.176 Sum_probs=55.8
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHhhh----ccCCCEEEEEEEcCCCCHHHHHHHHHHhcCCCCC---------CCCCHHH
Q 047163 177 NIIGVYGMGGVGKTTLVKQVAKQVME----DKLFDKVVMAEVTQNPDHHKIQDKLAFGLGMEFG---------FNENMFQ 243 (658)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~~----~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~---------~~~~~~~ 243 (658)
.++-|+|.+|+|||+|+.+++-.... ...-..++|++....+...++.+ +++.++.+.. ...+.++
T Consensus 127 ~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g~d~~~~l~~I~~~~~~~~e~ 205 (344)
T PLN03187 127 CITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFGMDADAVLDNIIYARAYTYEH 205 (344)
T ss_pred eEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcCCChhhhcCeEEEecCCCHHH
Confidence 57789999999999999988644321 11124789999999888887655 4555554321 0112222
Q ss_pred H---HHHHHHHHhcCCeEEEEEecCC
Q 047163 244 R---ASRLCERLKKEKRLLIILDNIW 266 (658)
Q Consensus 244 ~---~~~l~~~l~~~k~~LlVlDdv~ 266 (658)
. ...+...+...+--|||+|.+.
T Consensus 206 ~~~~l~~l~~~i~~~~~~LvVIDSit 231 (344)
T PLN03187 206 QYNLLLGLAAKMAEEPFRLLIVDSVI 231 (344)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCcH
Confidence 2 2223333433455689999885
No 244
>PRK06921 hypothetical protein; Provisional
Probab=95.75 E-value=0.049 Score=53.92 Aligned_cols=39 Identities=31% Similarity=0.386 Sum_probs=29.5
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEE
Q 047163 175 KLNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEV 214 (658)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v 214 (658)
....+.++|..|+|||+||..+++....+. -..+++++.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~-g~~v~y~~~ 154 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKK-GVPVLYFPF 154 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhc-CceEEEEEH
Confidence 456799999999999999999999875431 234556654
No 245
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.75 E-value=0.084 Score=54.10 Aligned_cols=90 Identities=18% Similarity=0.145 Sum_probs=53.4
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCCC-CHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHh
Q 047163 175 KLNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQNP-DHHKIQDKLAFGLGMEFGFNENMFQRASRLCERLK 253 (658)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 253 (658)
..++++++|+.|+||||++..++.....+. ..+.+++..... ....-++...+.++.+.....+..+... ..+.+.
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g--~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~-al~~l~ 281 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQN--RTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEE-AVQYMT 281 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcC--CeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHH-HHHHHH
Confidence 356999999999999999999987764432 345666664332 2233445556666654432233333333 333343
Q ss_pred -cCCeEEEEEecCCc
Q 047163 254 -KEKRLLIILDNIWI 267 (658)
Q Consensus 254 -~~k~~LlVlDdv~~ 267 (658)
.+..=+|++|-.-.
T Consensus 282 ~~~~~D~VLIDTAGr 296 (407)
T PRK12726 282 YVNCVDHILIDTVGR 296 (407)
T ss_pred hcCCCCEEEEECCCC
Confidence 12456888887753
No 246
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.74 E-value=0.079 Score=55.16 Aligned_cols=89 Identities=17% Similarity=0.145 Sum_probs=51.8
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHhhhcc--CCCEEEEEEEcCCC-CHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHH
Q 047163 175 KLNIIGVYGMGGVGKTTLVKQVAKQVMEDK--LFDKVVMAEVTQNP-DHHKIQDKLAFGLGMEFGFNENMFQRASRLCER 251 (658)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~--~F~~~~wv~v~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 251 (658)
..++|.++|+.|+||||.+..++....... +-..+..+++.... ....-++..++.++.+........+....+ ..
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L-~~ 251 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEI-TQ 251 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHH-HH
Confidence 356999999999999999999987765321 12245555554321 122225555666666543222323222222 23
Q ss_pred HhcCCeEEEEEecCC
Q 047163 252 LKKEKRLLIILDNIW 266 (658)
Q Consensus 252 l~~~k~~LlVlDdv~ 266 (658)
+ .+.-+|++|...
T Consensus 252 ~--~~~DlVLIDTaG 264 (388)
T PRK12723 252 S--KDFDLVLVDTIG 264 (388)
T ss_pred h--CCCCEEEEcCCC
Confidence 3 245688999875
No 247
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=95.72 E-value=0.07 Score=53.18 Aligned_cols=28 Identities=25% Similarity=0.278 Sum_probs=23.8
Q ss_pred CCccEEEEEcCCCChHHHHHHHHHHHhh
Q 047163 174 DKLNIIGVYGMGGVGKTTLVKQVAKQVM 201 (658)
Q Consensus 174 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (658)
....+|||.|..|+||||+|+.+..-..
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll~ 87 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALLS 87 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4567999999999999999998876654
No 248
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.72 E-value=0.045 Score=56.95 Aligned_cols=85 Identities=20% Similarity=0.224 Sum_probs=46.1
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCC-CCHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhc
Q 047163 176 LNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQN-PDHHKIQDKLAFGLGMEFGFNENMFQRASRLCERLKK 254 (658)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 254 (658)
..++.++|++|+||||++..++........+ .+..++.... ......++..++.++.+.. . ......+.+.+..
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~-~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~-~---~~~~~~l~~~l~~ 297 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGK-SVSLYTTDNYRIAAIEQLKRYADTMGMPFY-P---VKDIKKFKETLAR 297 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCC-eEEEecccchhhhHHHHHHHHHHhcCCCee-e---hHHHHHHHHHHHh
Confidence 4689999999999999999998765322222 2333333221 1222334444455555432 1 1112344444443
Q ss_pred CCeEEEEEecC
Q 047163 255 EKRLLIILDNI 265 (658)
Q Consensus 255 ~k~~LlVlDdv 265 (658)
...-+||+|-.
T Consensus 298 ~~~D~VLIDTa 308 (432)
T PRK12724 298 DGSELILIDTA 308 (432)
T ss_pred CCCCEEEEeCC
Confidence 34456888843
No 249
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.72 E-value=0.027 Score=62.40 Aligned_cols=87 Identities=21% Similarity=0.151 Sum_probs=56.0
Q ss_pred hHHHHHHHHHHhccC---------CccEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCCCCHHHHHHHHHHh
Q 047163 160 KMEVFQDVMEALKDD---------KLNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQNPDHHKIQDKLAFG 230 (658)
Q Consensus 160 r~~~~~~l~~~l~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~ 230 (658)
-..++++++++|+++ -++=+-++|++|.|||-||++++....+- +++++... ..+.
T Consensus 319 AK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVP-------F~svSGSE--------FvE~ 383 (774)
T KOG0731|consen 319 AKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVP-------FFSVSGSE--------FVEM 383 (774)
T ss_pred HHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCc-------eeeechHH--------HHHH
Confidence 344566667777632 13457899999999999999999887653 34554331 1111
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHhcCCeEEEEEecCCc
Q 047163 231 LGMEFGFNENMFQRASRLCERLKKEKRLLIILDNIWI 267 (658)
Q Consensus 231 l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~ 267 (658)
+... .......++..-+.+..+.|.+|+++.
T Consensus 384 ~~g~------~asrvr~lf~~ar~~aP~iifideida 414 (774)
T KOG0731|consen 384 FVGV------GASRVRDLFPLARKNAPSIIFIDEIDA 414 (774)
T ss_pred hccc------chHHHHHHHHHhhccCCeEEEeccccc
Confidence 1111 123556677776667888999998864
No 250
>PTZ00301 uridine kinase; Provisional
Probab=95.71 E-value=0.01 Score=56.37 Aligned_cols=26 Identities=31% Similarity=0.686 Sum_probs=23.2
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHHhh
Q 047163 176 LNIIGVYGMGGVGKTTLVKQVAKQVM 201 (658)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (658)
..+|+|.|.+|+||||||+.+.+...
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l~ 28 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSELM 28 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHHH
Confidence 46899999999999999999988764
No 251
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.70 E-value=0.097 Score=51.96 Aligned_cols=40 Identities=33% Similarity=0.471 Sum_probs=30.2
Q ss_pred CCccEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEc
Q 047163 174 DKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVT 215 (658)
Q Consensus 174 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~ 215 (658)
.+.+++.++|++|+||||++..++...... -..+.+++..
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~--g~~V~li~~D 109 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQ--GKSVLLAAGD 109 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhc--CCEEEEEeCC
Confidence 346799999999999999999998877542 2355666654
No 252
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=95.70 E-value=0.079 Score=52.23 Aligned_cols=89 Identities=18% Similarity=0.110 Sum_probs=54.1
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCCCCHHHHHHHHHHhcCCC-CCCCCCHHHHHHHHHHHHhc
Q 047163 176 LNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQNPDHHKIQDKLAFGLGME-FGFNENMFQRASRLCERLKK 254 (658)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~-~~~~~~~~~~~~~l~~~l~~ 254 (658)
-+++=|+|+.|+||||+|.+++-...-. -..++|++....+++..+..---..+..- ...+.+.++....+....+.
T Consensus 60 g~ItEiyG~~gsGKT~lal~~~~~aq~~--g~~a~fIDtE~~l~p~r~~~l~~~~~d~l~v~~~~~~e~q~~i~~~~~~~ 137 (279)
T COG0468 60 GRITEIYGPESSGKTTLALQLVANAQKP--GGKAAFIDTEHALDPERAKQLGVDLLDNLLVSQPDTGEQQLEIAEKLARS 137 (279)
T ss_pred ceEEEEecCCCcchhhHHHHHHHHhhcC--CCeEEEEeCCCCCCHHHHHHHHHhhhcceeEecCCCHHHHHHHHHHHHHh
Confidence 3578899999999999999987665432 34889999998888876543332212111 11122333332222222222
Q ss_pred C--CeEEEEEecCC
Q 047163 255 E--KRLLIILDNIW 266 (658)
Q Consensus 255 ~--k~~LlVlDdv~ 266 (658)
. +--|+|+|-+-
T Consensus 138 ~~~~i~LvVVDSva 151 (279)
T COG0468 138 GAEKIDLLVVDSVA 151 (279)
T ss_pred ccCCCCEEEEecCc
Confidence 2 36699999885
No 253
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.70 E-value=0.026 Score=48.98 Aligned_cols=119 Identities=13% Similarity=0.224 Sum_probs=48.8
Q ss_pred HHhcCCCCCcEEEccCCCCCCCcc-ccccCCCcceEEccCCCCCCc--hhhhccCCCcEEEccCccCCccch-hhcCCCC
Q 047163 519 LFFEGTKELKDLSLTRIPFSSLPS-SLGSLINLGTLCLEDCPRNDI--AILRQLKKLEILRLRHSYTERLPL-EIGQLTR 594 (658)
Q Consensus 519 ~~~~~~~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~L~~~~~~~l--~~~~~l~~L~~L~l~~~~~~~lp~-~~~~l~~ 594 (658)
..|.++.+|+.+.+.. .+..++. .+..+.+|+.+.+..+ +..+ ..+...++|+.+.+.. .+..++. .+..+.+
T Consensus 6 ~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~ 82 (129)
T PF13306_consen 6 NAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN 82 (129)
T ss_dssp TTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred HHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccc
Confidence 3445555555555553 3433332 3444555666666553 4444 3455555666666654 4444443 3445677
Q ss_pred CcEEcccCcccccccChhhhcCCCCCcEEEcccCCCCcccccCCCccchhhcCCC
Q 047163 595 LRLLDLSNCWRLKVIAPNVISKLSRLEELYMGNSFPKWDKVEGGSNASLAELKGL 649 (658)
Q Consensus 595 L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~L 649 (658)
|+.+.+..+ +..++...+.+. +|+.+.+.++ +.......+.++++|
T Consensus 83 l~~i~~~~~--~~~i~~~~f~~~-~l~~i~~~~~------~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 83 LKNIDIPSN--ITEIGSSSFSNC-NLKEINIPSN------ITKIEENAFKNCTKL 128 (129)
T ss_dssp ECEEEETTT---BEEHTTTTTT--T--EEE-TTB-------SS----GGG-----
T ss_pred ccccccCcc--ccEEchhhhcCC-CceEEEECCC------ccEECCccccccccC
Confidence 777777553 555555556665 7777776542 233334556666655
No 254
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.70 E-value=0.099 Score=56.41 Aligned_cols=95 Identities=18% Similarity=0.216 Sum_probs=60.3
Q ss_pred cccccccchHHHHHHHHHHhc-------------cCCccEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCCC
Q 047163 152 KDFEAFDSKMEVFQDVMEALK-------------DDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQNP 218 (658)
Q Consensus 152 ~~~~~~~gr~~~~~~l~~~l~-------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~ 218 (658)
....++=|-++.+.+|-+... -...+=|..+|++|+|||++|+.+++..... | +.++..
T Consensus 431 v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~n--F-----lsvkgp- 502 (693)
T KOG0730|consen 431 VSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMN--F-----LSVKGP- 502 (693)
T ss_pred CChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCC--e-----eeccCH-
Confidence 444555556665555544332 1456778999999999999999999887643 3 333222
Q ss_pred CHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhcCCeEEEEEecCCc
Q 047163 219 DHHKIQDKLAFGLGMEFGFNENMFQRASRLCERLKKEKRLLIILDNIWI 267 (658)
Q Consensus 219 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~ 267 (658)
+++.-. ..+.+..+..+++.-++--.++|.||.++.
T Consensus 503 -------EL~sk~------vGeSEr~ir~iF~kAR~~aP~IiFfDEiDs 538 (693)
T KOG0730|consen 503 -------ELFSKY------VGESERAIREVFRKARQVAPCIIFFDEIDA 538 (693)
T ss_pred -------HHHHHh------cCchHHHHHHHHHHHhhcCCeEEehhhHHh
Confidence 111111 223345666777776655679999999874
No 255
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=95.69 E-value=0.035 Score=59.40 Aligned_cols=77 Identities=19% Similarity=0.223 Sum_probs=47.7
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhcC
Q 047163 176 LNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQNPDHHKIQDKLAFGLGMEFGFNENMFQRASRLCERLKKE 255 (658)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 255 (658)
...+.|+|..|+|||+|++.+++.......-..+++++. .++...+...++... +....+.+.++
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~------~~f~~~~~~~l~~~~-------~~~~~~~~~~~-- 205 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSG------DEFARKAVDILQKTH-------KEIEQFKNEIC-- 205 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEH------HHHHHHHHHHHHHhh-------hHHHHHHHHhc--
Confidence 356899999999999999999997654222224445443 345566655543210 12334444444
Q ss_pred CeEEEEEecCCc
Q 047163 256 KRLLIILDNIWI 267 (658)
Q Consensus 256 k~~LlVlDdv~~ 267 (658)
+.-+||+||+..
T Consensus 206 ~~dvLiIDDiq~ 217 (450)
T PRK14087 206 QNDVLIIDDVQF 217 (450)
T ss_pred cCCEEEEecccc
Confidence 345889999963
No 256
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=95.68 E-value=0.087 Score=51.35 Aligned_cols=47 Identities=13% Similarity=0.188 Sum_probs=34.3
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCCCCHHHHHHH
Q 047163 176 LNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQNPDHHKIQDK 226 (658)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~ 226 (658)
-.++.|.|.+|+|||++|.++......+ -..++|++..+. ..++.+.
T Consensus 21 gs~~lI~G~pGsGKT~la~~~l~~~~~~--ge~~lyvs~ee~--~~~i~~~ 67 (237)
T TIGR03877 21 RNVVLLSGGPGTGKSIFSQQFLWNGLQM--GEPGIYVALEEH--PVQVRRN 67 (237)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHc--CCcEEEEEeeCC--HHHHHHH
Confidence 3589999999999999999977654322 457888887654 4445444
No 257
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=95.65 E-value=0.029 Score=54.35 Aligned_cols=49 Identities=14% Similarity=0.261 Sum_probs=32.2
Q ss_pred ccccc-chHH-HHHHHHHHhc-cCCccEEEEEcCCCChHHHHHHHHHHHhhh
Q 047163 154 FEAFD-SKME-VFQDVMEALK-DDKLNIIGVYGMGGVGKTTLVKQVAKQVME 202 (658)
Q Consensus 154 ~~~~~-gr~~-~~~~l~~~l~-~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 202 (658)
...|+ |... .+..+.++.. ....+.+.|+|..|+|||+||+.+++....
T Consensus 17 ~d~f~~~~~~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~ 68 (227)
T PRK08903 17 FDNFVAGENAELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADASY 68 (227)
T ss_pred hcccccCCcHHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHHHh
Confidence 33444 4433 3344444433 234467899999999999999999998643
No 258
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=95.65 E-value=0.049 Score=55.76 Aligned_cols=90 Identities=16% Similarity=0.127 Sum_probs=55.4
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHHhhhc----cCCCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCC---------CCCHH
Q 047163 176 LNIIGVYGMGGVGKTTLVKQVAKQVMED----KLFDKVVMAEVTQNPDHHKIQDKLAFGLGMEFGF---------NENMF 242 (658)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~---------~~~~~ 242 (658)
-.++-|.|.+|+|||+|+..++-..... ..-..++|++....+...++. +|++.++..... ..+.+
T Consensus 123 g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~-qia~~~~~~~~~~l~~i~~~~~~~~e 201 (342)
T PLN03186 123 GSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLI-QIAERFGLNGADVLENVAYARAYNTD 201 (342)
T ss_pred ceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHH-HHHHHcCCChhhhccceEEEecCCHH
Confidence 3578899999999999999887543211 112378999999988887764 445555543210 11222
Q ss_pred HHH---HHHHHHHhcCCeEEEEEecCC
Q 047163 243 QRA---SRLCERLKKEKRLLIILDNIW 266 (658)
Q Consensus 243 ~~~---~~l~~~l~~~k~~LlVlDdv~ 266 (658)
... ..+...+...+--|||+|-+.
T Consensus 202 ~~~~ll~~~~~~~~~~~~~LIVIDSI~ 228 (342)
T PLN03186 202 HQSELLLEAASMMAETRFALMIVDSAT 228 (342)
T ss_pred HHHHHHHHHHHHhhccCCCEEEEeCcH
Confidence 222 222223344456699999875
No 259
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=95.63 E-value=0.011 Score=52.52 Aligned_cols=24 Identities=42% Similarity=0.578 Sum_probs=21.3
Q ss_pred EEEEEcCCCChHHHHHHHHHHHhh
Q 047163 178 IIGVYGMGGVGKTTLVKQVAKQVM 201 (658)
Q Consensus 178 vi~I~G~gGiGKTtLa~~v~~~~~ 201 (658)
+|.++|++|+||||+|+.+.....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC
Confidence 688999999999999999986654
No 260
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=95.62 E-value=0.011 Score=56.37 Aligned_cols=27 Identities=41% Similarity=0.529 Sum_probs=23.8
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHhh
Q 047163 175 KLNIIGVYGMGGVGKTTLVKQVAKQVM 201 (658)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (658)
...+|+|+|++|+||||||+.+.....
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 446899999999999999999998764
No 261
>PRK10536 hypothetical protein; Provisional
Probab=95.61 E-value=0.069 Score=51.69 Aligned_cols=58 Identities=21% Similarity=0.319 Sum_probs=43.0
Q ss_pred cccccccchHHHHHHHHHHhccCCccEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEE
Q 047163 152 KDFEAFDSKMEVFQDVMEALKDDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVM 211 (658)
Q Consensus 152 ~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~w 211 (658)
.+...+.+|......++.++.+. .+|.+.|..|.|||+||..+..+.-....|+.++.
T Consensus 52 ~~~~~i~p~n~~Q~~~l~al~~~--~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI 109 (262)
T PRK10536 52 RDTSPILARNEAQAHYLKAIESK--QLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIV 109 (262)
T ss_pred cCCccccCCCHHHHHHHHHHhcC--CeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEE
Confidence 44555678888888888888664 49999999999999999999986432233554443
No 262
>PRK09183 transposase/IS protein; Provisional
Probab=95.60 E-value=0.057 Score=53.25 Aligned_cols=26 Identities=31% Similarity=0.424 Sum_probs=22.5
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHhhh
Q 047163 177 NIIGVYGMGGVGKTTLVKQVAKQVME 202 (658)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~~ 202 (658)
..+.|+|++|+|||+||..+......
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a~~ 128 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEAVR 128 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 46889999999999999999877553
No 263
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=95.60 E-value=0.031 Score=51.55 Aligned_cols=24 Identities=42% Similarity=0.548 Sum_probs=21.8
Q ss_pred EEEEEcCCCChHHHHHHHHHHHhh
Q 047163 178 IIGVYGMGGVGKTTLVKQVAKQVM 201 (658)
Q Consensus 178 vi~I~G~gGiGKTtLa~~v~~~~~ 201 (658)
.|.|.|.+|+||||+|+.+.+...
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~ 25 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLG 25 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999999954
No 264
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=95.58 E-value=0.07 Score=51.25 Aligned_cols=24 Identities=33% Similarity=0.488 Sum_probs=22.1
Q ss_pred EEEEEcCCCChHHHHHHHHHHHhh
Q 047163 178 IIGVYGMGGVGKTTLVKQVAKQVM 201 (658)
Q Consensus 178 vi~I~G~gGiGKTtLa~~v~~~~~ 201 (658)
+|+|.|.+|+||||+|+.+.....
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~ 24 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLS 24 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHh
Confidence 589999999999999999998875
No 265
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=95.58 E-value=0.082 Score=53.92 Aligned_cols=90 Identities=23% Similarity=0.231 Sum_probs=55.2
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHHhhhcc----CCCEEEEEEEcCCCCHHHHHHHHHHhcCCCCC---------CCCCH-
Q 047163 176 LNIIGVYGMGGVGKTTLVKQVAKQVMEDK----LFDKVVMAEVTQNPDHHKIQDKLAFGLGMEFG---------FNENM- 241 (658)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~---------~~~~~- 241 (658)
-.++-|+|.+|+||||++.+++....... .=..++|++....++..++.+. +..++.... ...+.
T Consensus 95 g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~~~-~~~~gl~~~~~~~~i~i~~~~~~~ 173 (310)
T TIGR02236 95 QAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIMQM-AEARGLDPDEVLKNIYVARAYNSN 173 (310)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHHHH-HHHcCCCHHHHhhceEEEecCCHH
Confidence 46889999999999999999987653210 1137899999888887765543 444433210 00111
Q ss_pred --HHHHHHHHHHHhcCC--eEEEEEecCC
Q 047163 242 --FQRASRLCERLKKEK--RLLIILDNIW 266 (658)
Q Consensus 242 --~~~~~~l~~~l~~~k--~~LlVlDdv~ 266 (658)
......+.+.+...+ .-+||+|.+.
T Consensus 174 ~~~~lld~l~~~i~~~~~~~~lVVIDSis 202 (310)
T TIGR02236 174 HQMLLVEKAEDLIKELNNPVKLLIVDSLT 202 (310)
T ss_pred HHHHHHHHHHHHHHhcCCCceEEEEecch
Confidence 112344455554322 4589999885
No 266
>PRK10867 signal recognition particle protein; Provisional
Probab=95.58 E-value=0.078 Score=56.00 Aligned_cols=91 Identities=21% Similarity=0.204 Sum_probs=50.7
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCCC-CHHHHHHHHHHhcCCCCC---CCCCHHHHHHHHHH
Q 047163 175 KLNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQNP-DHHKIQDKLAFGLGMEFG---FNENMFQRASRLCE 250 (658)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~-~~~~~~~~i~~~l~~~~~---~~~~~~~~~~~l~~ 250 (658)
...+|.++|.+|+||||.+..++.....+.. ..+..|++.... ...+-++...+..+.+.. ...+..+......+
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G-~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~~~~~dp~~i~~~a~~ 177 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYLKKKKK-KKVLLVAADVYRPAAIEQLKTLGEQIGVPVFPSGDGQDPVDIAKAALE 177 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHhcC-CcEEEEEccccchHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHHH
Confidence 4679999999999999999988887654311 234445543221 122233344555554422 12233444444444
Q ss_pred HHhcCCeEEEEEecCC
Q 047163 251 RLKKEKRLLIILDNIW 266 (658)
Q Consensus 251 ~l~~~k~~LlVlDdv~ 266 (658)
..+....-++|+|-.-
T Consensus 178 ~a~~~~~DvVIIDTaG 193 (433)
T PRK10867 178 EAKENGYDVVIVDTAG 193 (433)
T ss_pred HHHhcCCCEEEEeCCC
Confidence 4443233388888764
No 267
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=95.58 E-value=0.062 Score=54.63 Aligned_cols=90 Identities=16% Similarity=0.113 Sum_probs=53.7
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHHhhh---c-cCCCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCC---------CCCHH
Q 047163 176 LNIIGVYGMGGVGKTTLVKQVAKQVME---D-KLFDKVVMAEVTQNPDHHKIQDKLAFGLGMEFGF---------NENMF 242 (658)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~---~-~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~---------~~~~~ 242 (658)
-.++.|+|.+|+|||||+..++..... . ..-..++|++....++..++ .++++.++..... ..+.+
T Consensus 96 g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl-~~ia~~~~~~~~~~l~~i~~~~~~~~~ 174 (316)
T TIGR02239 96 GSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERL-LAIAERYGLNPEDVLDNVAYARAYNTD 174 (316)
T ss_pred CeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHH-HHHHHHcCCChHHhhccEEEEecCChH
Confidence 458899999999999999998763221 1 11236799998887777654 3344444432210 11122
Q ss_pred HH---HHHHHHHHhcCCeEEEEEecCC
Q 047163 243 QR---ASRLCERLKKEKRLLIILDNIW 266 (658)
Q Consensus 243 ~~---~~~l~~~l~~~k~~LlVlDdv~ 266 (658)
+. ...+...+...+--|||+|-+.
T Consensus 175 ~~~~~l~~~~~~~~~~~~~LvVIDSI~ 201 (316)
T TIGR02239 175 HQLQLLQQAAAMMSESRFALLIVDSAT 201 (316)
T ss_pred HHHHHHHHHHHhhccCCccEEEEECcH
Confidence 22 2223333433456689999885
No 268
>PRK06762 hypothetical protein; Provisional
Probab=95.57 E-value=0.012 Score=53.97 Aligned_cols=25 Identities=36% Similarity=0.573 Sum_probs=22.7
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHHh
Q 047163 176 LNIIGVYGMGGVGKTTLVKQVAKQV 200 (658)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~ 200 (658)
..+|.|.|+.|+||||+|+.+.+..
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999999876
No 269
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=95.54 E-value=0.086 Score=53.90 Aligned_cols=90 Identities=27% Similarity=0.252 Sum_probs=55.2
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHHhhhccC----CCEEEEEEEcCCCCHHHHHHHHHHhcCCCCC---------CCCCHH
Q 047163 176 LNIIGVYGMGGVGKTTLVKQVAKQVMEDKL----FDKVVMAEVTQNPDHHKIQDKLAFGLGMEFG---------FNENMF 242 (658)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~---------~~~~~~ 242 (658)
-.++-|+|.+|+|||+++.+++........ =..++|++....++..++.+. ++.++.... ...+..
T Consensus 102 g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~~-~~~~g~~~~~~l~~i~~~~~~~~~ 180 (317)
T PRK04301 102 QSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQM-AEALGLDPDEVLDNIHVARAYNSD 180 (317)
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHHH-HHHcCCChHhhhccEEEEeCCCHH
Confidence 458889999999999999999876532111 147899999888877766543 344433211 001111
Q ss_pred ---HHHHHHHHHHhc-CCeEEEEEecCC
Q 047163 243 ---QRASRLCERLKK-EKRLLIILDNIW 266 (658)
Q Consensus 243 ---~~~~~l~~~l~~-~k~~LlVlDdv~ 266 (658)
.....+...+.. .+--|||+|-+.
T Consensus 181 ~~~~~~~~l~~~i~~~~~~~lvVIDSis 208 (317)
T PRK04301 181 HQMLLAEKAEELIKEGENIKLVIVDSLT 208 (317)
T ss_pred HHHHHHHHHHHHHhccCceeEEEEECch
Confidence 123344444443 344599999885
No 270
>PTZ00035 Rad51 protein; Provisional
Probab=95.51 E-value=0.082 Score=54.23 Aligned_cols=90 Identities=18% Similarity=0.176 Sum_probs=53.6
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHHhhh---c-cCCCEEEEEEEcCCCCHHHHHHHHHHhcCCCCC---------CCCCHH
Q 047163 176 LNIIGVYGMGGVGKTTLVKQVAKQVME---D-KLFDKVVMAEVTQNPDHHKIQDKLAFGLGMEFG---------FNENMF 242 (658)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~---~-~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~---------~~~~~~ 242 (658)
-.++.|+|.+|+|||||+..++-.... . ..=..++|++....++..++ ..+++.++.... ...+.+
T Consensus 118 G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri-~~ia~~~g~~~~~~l~nI~~~~~~~~e 196 (337)
T PTZ00035 118 GSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERI-VQIAERFGLDPEDVLDNIAYARAYNHE 196 (337)
T ss_pred CeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHH-HHHHHHhCCChHhHhhceEEEccCCHH
Confidence 358899999999999999988755431 0 11236779998777776654 333444443211 011222
Q ss_pred HHHH---HHHHHHhcCCeEEEEEecCC
Q 047163 243 QRAS---RLCERLKKEKRLLIILDNIW 266 (658)
Q Consensus 243 ~~~~---~l~~~l~~~k~~LlVlDdv~ 266 (658)
+... .+...+..++--|||+|-+.
T Consensus 197 ~~~~~l~~~~~~l~~~~~~lvVIDSit 223 (337)
T PTZ00035 197 HQMQLLSQAAAKMAEERFALLIVDSAT 223 (337)
T ss_pred HHHHHHHHHHHHhhccCccEEEEECcH
Confidence 2222 23333444456699999885
No 271
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.51 E-value=0.033 Score=54.59 Aligned_cols=39 Identities=28% Similarity=0.357 Sum_probs=29.8
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHHhhhc--cCCCEEEEEEE
Q 047163 176 LNIIGVYGMGGVGKTTLVKQVAKQVMED--KLFDKVVMAEV 214 (658)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~--~~F~~~~wv~v 214 (658)
-++|.++|++|.|||+|.+.++++...+ ..+.....+.+
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEi 217 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEI 217 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEE
Confidence 4789999999999999999999998764 33433344444
No 272
>PRK03839 putative kinase; Provisional
Probab=95.49 E-value=0.012 Score=54.64 Aligned_cols=24 Identities=46% Similarity=0.646 Sum_probs=22.1
Q ss_pred EEEEEcCCCChHHHHHHHHHHHhh
Q 047163 178 IIGVYGMGGVGKTTLVKQVAKQVM 201 (658)
Q Consensus 178 vi~I~G~gGiGKTtLa~~v~~~~~ 201 (658)
.|.|.|++|+||||+|+.+++...
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~ 25 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999999874
No 273
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=95.49 E-value=0.013 Score=54.87 Aligned_cols=26 Identities=31% Similarity=0.405 Sum_probs=23.3
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHh
Q 047163 175 KLNIIGVYGMGGVGKTTLVKQVAKQV 200 (658)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 200 (658)
+.++|.|+|++|+||||+|+.+....
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 46799999999999999999998765
No 274
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=95.48 E-value=0.03 Score=48.44 Aligned_cols=69 Identities=16% Similarity=0.093 Sum_probs=40.9
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhcC
Q 047163 177 NIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQNPDHHKIQDKLAFGLGMEFGFNENMFQRASRLCERLKKE 255 (658)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 255 (658)
+-|.|.|.+|+||||++..++....- -|+++|+-.....+...--+..... ..+.....+.+...+..|
T Consensus 8 PNILvtGTPG~GKstl~~~lae~~~~-------~~i~isd~vkEn~l~~gyDE~y~c~---i~DEdkv~D~Le~~m~~G 76 (176)
T KOG3347|consen 8 PNILVTGTPGTGKSTLAERLAEKTGL-------EYIEISDLVKENNLYEGYDEEYKCH---ILDEDKVLDELEPLMIEG 76 (176)
T ss_pred CCEEEeCCCCCCchhHHHHHHHHhCC-------ceEehhhHHhhhcchhcccccccCc---cccHHHHHHHHHHHHhcC
Confidence 45889999999999999999965543 2777765433333333222221111 223445556666666543
No 275
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=95.47 E-value=0.093 Score=51.09 Aligned_cols=86 Identities=16% Similarity=0.208 Sum_probs=53.3
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCCCCHHHHHHHHHHhcCCCCC-------------------
Q 047163 176 LNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQNPDHHKIQDKLAFGLGMEFG------------------- 236 (658)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~------------------- 236 (658)
-.++.|+|.+|+|||++|.++......+ =..++|++..+. ..++.+.+ ..++....
T Consensus 25 g~~~~i~G~~GsGKt~l~~~~~~~~~~~--g~~~~y~~~e~~--~~~~~~~~-~~~g~~~~~~~~~g~l~i~~~~~~~~~ 99 (234)
T PRK06067 25 PSLILIEGDHGTGKSVLSQQFVYGALKQ--GKKVYVITTENT--SKSYLKQM-ESVKIDISDFFLWGYLRIFPLNTEGFE 99 (234)
T ss_pred CcEEEEECCCCCChHHHHHHHHHHHHhC--CCEEEEEEcCCC--HHHHHHHH-HHCCCChhHHHhCCCceEEeccccccc
Confidence 4689999999999999999997654322 347888888655 34454443 22221110
Q ss_pred -CCCCHHHHHHHHHHHHhcCCeEEEEEecCC
Q 047163 237 -FNENMFQRASRLCERLKKEKRLLIILDNIW 266 (658)
Q Consensus 237 -~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~ 266 (658)
......+....+.+.+...+.-++|+|.+.
T Consensus 100 ~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t 130 (234)
T PRK06067 100 WNSTLANKLLELIIEFIKSKREDVIIIDSLT 130 (234)
T ss_pred cCcchHHHHHHHHHHHHHhcCCCEEEEecHH
Confidence 011223455556666654355689999875
No 276
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=95.47 E-value=0.014 Score=54.81 Aligned_cols=28 Identities=43% Similarity=0.615 Sum_probs=24.9
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHhhh
Q 047163 175 KLNIIGVYGMGGVGKTTLVKQVAKQVME 202 (658)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 202 (658)
.+.+|||.|.+|+||||+|+.++.....
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~~~~~ 34 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSEQLGV 34 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHhCc
Confidence 3568999999999999999999988864
No 277
>CHL00195 ycf46 Ycf46; Provisional
Probab=95.46 E-value=0.056 Score=58.14 Aligned_cols=93 Identities=13% Similarity=0.113 Sum_probs=53.9
Q ss_pred cccccchHHHHHHHHHH---hc----c---CCccEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCCCCHHHH
Q 047163 154 FEAFDSKMEVFQDVMEA---LK----D---DKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQNPDHHKI 223 (658)
Q Consensus 154 ~~~~~gr~~~~~~l~~~---l~----~---~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~ 223 (658)
..++.|.+..++.+.+. +. . ...+-|.++|++|.|||.+|+.+++..... | +-++.+.
T Consensus 227 ~~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~--~---~~l~~~~------- 294 (489)
T CHL00195 227 ISDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLP--L---LRLDVGK------- 294 (489)
T ss_pred HHHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCC--E---EEEEhHH-------
Confidence 44566776655554432 11 1 234568899999999999999999876431 2 1222211
Q ss_pred HHHHHHhcCCCCCCCCCHHHHHHHHHHHHhcCCeEEEEEecCCc
Q 047163 224 QDKLAFGLGMEFGFNENMFQRASRLCERLKKEKRLLIILDNIWI 267 (658)
Q Consensus 224 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~ 267 (658)
+.... ....+.....+++..+...+++|++|+++.
T Consensus 295 ---l~~~~------vGese~~l~~~f~~A~~~~P~IL~IDEID~ 329 (489)
T CHL00195 295 ---LFGGI------VGESESRMRQMIRIAEALSPCILWIDEIDK 329 (489)
T ss_pred ---hcccc------cChHHHHHHHHHHHHHhcCCcEEEehhhhh
Confidence 11100 111233444555555545789999999974
No 278
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.45 E-value=0.048 Score=52.76 Aligned_cols=90 Identities=20% Similarity=0.176 Sum_probs=52.2
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcC-----CCCHHHHHHHHHHhcCCCCCC------CCCHHHH
Q 047163 176 LNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQ-----NPDHHKIQDKLAFGLGMEFGF------NENMFQR 244 (658)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~-----~~~~~~~~~~i~~~l~~~~~~------~~~~~~~ 244 (658)
-.+++|||.+|+||||+++.+..-.... . +.++..-.+ .....+...+++...+.+... +.+--+.
T Consensus 39 ge~~glVGESG~GKSTlgr~i~~L~~pt--~-G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQr 115 (268)
T COG4608 39 GETLGLVGESGCGKSTLGRLILGLEEPT--S-GEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQR 115 (268)
T ss_pred CCEEEEEecCCCCHHHHHHHHHcCcCCC--C-ceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhh
Confidence 3489999999999999999999776542 2 233322111 112334456666666644320 1121222
Q ss_pred HH-HHHHHHhcCCeEEEEEecCCccc
Q 047163 245 AS-RLCERLKKEKRLLIILDNIWIEL 269 (658)
Q Consensus 245 ~~-~l~~~l~~~k~~LlVlDdv~~~~ 269 (658)
+. .+.+.+. -+.-|+|.|+.-+..
T Consensus 116 QRi~IARALa-l~P~liV~DEpvSaL 140 (268)
T COG4608 116 QRIGIARALA-LNPKLIVADEPVSAL 140 (268)
T ss_pred hhHHHHHHHh-hCCcEEEecCchhhc
Confidence 22 2344444 478899999986543
No 279
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.44 E-value=0.04 Score=48.66 Aligned_cols=42 Identities=21% Similarity=0.346 Sum_probs=31.7
Q ss_pred EEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCCCCHHHHHH
Q 047163 179 IGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQNPDHHKIQD 225 (658)
Q Consensus 179 i~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~ 225 (658)
|.|+|.+|+|||+||+.++..... ...-+.++...+..++..
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~~~-----~~~~i~~~~~~~~~dl~g 43 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALLGR-----PVIRINCSSDTTEEDLIG 43 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHTC-----EEEEEE-TTTSTHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHhhc-----ceEEEEecccccccccee
Confidence 679999999999999999988832 344567777777776553
No 280
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=95.44 E-value=0.071 Score=61.03 Aligned_cols=48 Identities=29% Similarity=0.241 Sum_probs=39.5
Q ss_pred cccccchHHHHHHHHHHhc------cCCccEEEEEcCCCChHHHHHHHHHHHhh
Q 047163 154 FEAFDSKMEVFQDVMEALK------DDKLNIIGVYGMGGVGKTTLVKQVAKQVM 201 (658)
Q Consensus 154 ~~~~~gr~~~~~~l~~~l~------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (658)
...++|.++.++.|++++. .....++.++|++|+||||+|+.++....
T Consensus 321 ~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~ 374 (784)
T PRK10787 321 DTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATG 374 (784)
T ss_pred hhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 3447899999999998876 12346899999999999999999998664
No 281
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=95.43 E-value=0.36 Score=49.86 Aligned_cols=90 Identities=24% Similarity=0.255 Sum_probs=51.8
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEc-CCCCHHHHHHHHHHhcCCCCCC---CCCHHHHHHHHHH
Q 047163 175 KLNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVT-QNPDHHKIQDKLAFGLGMEFGF---NENMFQRASRLCE 250 (658)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~-~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~l~~ 250 (658)
.+.||-.+|.-|.||||-|-.+++..+.+ .+ .+..|++. ..+...+=++.+..+.+.+.-. ..+..+.+..-.+
T Consensus 99 ~P~vImmvGLQGsGKTTt~~KLA~~lkk~-~~-kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al~ 176 (451)
T COG0541 99 PPTVILMVGLQGSGKTTTAGKLAKYLKKK-GK-KVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAALE 176 (451)
T ss_pred CCeEEEEEeccCCChHhHHHHHHHHHHHc-CC-ceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHHHHH
Confidence 46789999999999999999999888752 22 22233322 2233444556667777655431 2234444444444
Q ss_pred HHhcCCeEEEEEecCC
Q 047163 251 RLKKEKRLLIILDNIW 266 (658)
Q Consensus 251 ~l~~~k~~LlVlDdv~ 266 (658)
..+....=++|+|-.-
T Consensus 177 ~ak~~~~DvvIvDTAG 192 (451)
T COG0541 177 KAKEEGYDVVIVDTAG 192 (451)
T ss_pred HHHHcCCCEEEEeCCC
Confidence 4443333455556543
No 282
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=95.43 E-value=0.11 Score=49.27 Aligned_cols=86 Identities=27% Similarity=0.376 Sum_probs=53.3
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCCC-CHHHHHHHHHHhcCCCC-----C-CCCCHHH------
Q 047163 177 NIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQNP-DHHKIQDKLAFGLGMEF-----G-FNENMFQ------ 243 (658)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~-~~~~~~~~i~~~l~~~~-----~-~~~~~~~------ 243 (658)
..++|.|..|+|||+|+..+.+... -+.++++.+++.. ...++.+++...-..+. . .......
T Consensus 16 qr~~I~g~~g~GKt~Ll~~i~~~~~----~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~~~ 91 (215)
T PF00006_consen 16 QRIGIFGGAGVGKTVLLQEIANNQD----ADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYRAPY 91 (215)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHCT----TTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHHHH
T ss_pred CEEEEEcCcccccchhhHHHHhccc----ccceeeeeccccchhHHHHHHHHhhcccccccccccccchhhHHHHhhhhc
Confidence 4789999999999999999998875 3455888888764 45555555543211100 0 0111111
Q ss_pred HHHHHHHHHh-cCCeEEEEEecCC
Q 047163 244 RASRLCERLK-KEKRLLIILDNIW 266 (658)
Q Consensus 244 ~~~~l~~~l~-~~k~~LlVlDdv~ 266 (658)
..-.+-++++ .++.+|+++||+.
T Consensus 92 ~a~t~AEyfrd~G~dVlli~Dslt 115 (215)
T PF00006_consen 92 TALTIAEYFRDQGKDVLLIIDSLT 115 (215)
T ss_dssp HHHHHHHHHHHTTSEEEEEEETHH
T ss_pred cchhhhHHHhhcCCceeehhhhhH
Confidence 1112233332 4899999999985
No 283
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=95.41 E-value=0.04 Score=57.19 Aligned_cols=85 Identities=25% Similarity=0.237 Sum_probs=51.4
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCC-CCCHHHHHHHHHHHHhcC
Q 047163 177 NIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQNPDHHKIQDKLAFGLGMEFGF-NENMFQRASRLCERLKKE 255 (658)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~-~~~~~~~~~~l~~~l~~~ 255 (658)
.++.|.|.+|+|||||+.+++...... -..++|++..+. ..++.. -+..++..... ..........+.+.+...
T Consensus 83 slvLI~G~pG~GKStLllq~a~~~a~~--g~~VlYvs~EEs--~~qi~~-Ra~rlg~~~~~l~l~~e~~le~I~~~i~~~ 157 (372)
T cd01121 83 SVILIGGDPGIGKSTLLLQVAARLAKR--GGKVLYVSGEES--PEQIKL-RADRLGISTENLYLLAETNLEDILASIEEL 157 (372)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhc--CCeEEEEECCcC--HHHHHH-HHHHcCCCcccEEEEccCcHHHHHHHHHhc
Confidence 589999999999999999999877543 246778776443 333322 23444433210 000011233444555444
Q ss_pred CeEEEEEecCC
Q 047163 256 KRLLIILDNIW 266 (658)
Q Consensus 256 k~~LlVlDdv~ 266 (658)
+.-++|+|.+.
T Consensus 158 ~~~lVVIDSIq 168 (372)
T cd01121 158 KPDLVIIDSIQ 168 (372)
T ss_pred CCcEEEEcchH
Confidence 66789999985
No 284
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=95.40 E-value=0.095 Score=51.91 Aligned_cols=109 Identities=19% Similarity=0.220 Sum_probs=67.1
Q ss_pred cccchHHHHHHHHHHhc----cCCccEEEEEcCCCChHHHHHHHHHHHhhhccCCC-EEEEEEEcCCCCH-HHHHHHHHH
Q 047163 156 AFDSKMEVFQDVMEALK----DDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFD-KVVMAEVTQNPDH-HKIQDKLAF 229 (658)
Q Consensus 156 ~~~gr~~~~~~l~~~l~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~v~~~~~~-~~~~~~i~~ 229 (658)
.++|-.++-.++-.++. .++..-|.|+|+.|.|||+|.-....+.+. |. ...-|........ .-.++.|..
T Consensus 25 ~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~~q~---~~E~~l~v~Lng~~~~dk~al~~I~r 101 (408)
T KOG2228|consen 25 NLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSDIQE---NGENFLLVRLNGELQTDKIALKGITR 101 (408)
T ss_pred ceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhhHHh---cCCeEEEEEECccchhhHHHHHHHHH
Confidence 46677777777777765 456678999999999999998888877322 32 3334444443322 224455544
Q ss_pred hcC----CCCCCCCCHHHHHHHHHHHHhc-----CCeEEEEEecCCc
Q 047163 230 GLG----MEFGFNENMFQRASRLCERLKK-----EKRLLIILDNIWI 267 (658)
Q Consensus 230 ~l~----~~~~~~~~~~~~~~~l~~~l~~-----~k~~LlVlDdv~~ 267 (658)
++. .......+..+....+...|++ +-++.+|+|+.+-
T Consensus 102 ql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDl 148 (408)
T KOG2228|consen 102 QLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDL 148 (408)
T ss_pred HHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhc
Confidence 442 2222233445566677777763 2357888988763
No 285
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=95.39 E-value=0.091 Score=53.98 Aligned_cols=45 Identities=27% Similarity=0.352 Sum_probs=36.1
Q ss_pred ccchHHHHHHHHHHhc-cCCccE-EEEEcCCCChHHHHHHHHHHHhh
Q 047163 157 FDSKMEVFQDVMEALK-DDKLNI-IGVYGMGGVGKTTLVKQVAKQVM 201 (658)
Q Consensus 157 ~~gr~~~~~~l~~~l~-~~~~~v-i~I~G~gGiGKTtLa~~v~~~~~ 201 (658)
++|-+.....+..+.. .++... +.++|+.|+||||+|..+.+..-
T Consensus 3 ~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~ 49 (325)
T COG0470 3 LVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELL 49 (325)
T ss_pred cccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHh
Confidence 4566777777777776 444555 99999999999999999999875
No 286
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=95.34 E-value=0.079 Score=51.90 Aligned_cols=91 Identities=22% Similarity=0.183 Sum_probs=57.9
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHhh--hccCCCEEEEEEEcCCC-CHHHHHHHHHHhcCCCCC------CCCCH-H----
Q 047163 177 NIIGVYGMGGVGKTTLVKQVAKQVM--EDKLFDKVVMAEVTQNP-DHHKIQDKLAFGLGMEFG------FNENM-F---- 242 (658)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~--~~~~F~~~~wv~v~~~~-~~~~~~~~i~~~l~~~~~------~~~~~-~---- 242 (658)
..++|.|-.|+|||+|+..+.++.. .+.+-+.++++-+++.. ...++.+++...-..... ...+. .
T Consensus 70 QR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~~a 149 (276)
T cd01135 70 QKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERIIT 149 (276)
T ss_pred CEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHHHH
Confidence 4789999999999999999988764 12234678899998775 455666666543211100 01111 1
Q ss_pred -HHHHHHHHHHhc--CCeEEEEEecCCc
Q 047163 243 -QRASRLCERLKK--EKRLLIILDNIWI 267 (658)
Q Consensus 243 -~~~~~l~~~l~~--~k~~LlVlDdv~~ 267 (658)
...-.+-++++. ++++|+++||+..
T Consensus 150 ~~~a~aiAEyfrd~~g~~VLl~~D~ltr 177 (276)
T cd01135 150 PRMALTTAEYLAYEKGKHVLVILTDMTN 177 (276)
T ss_pred HHHHHHHHHHHHhccCCeEEEEEcChhH
Confidence 112235555542 6999999999863
No 287
>PRK04296 thymidine kinase; Provisional
Probab=95.34 E-value=0.043 Score=51.42 Aligned_cols=84 Identities=20% Similarity=0.113 Sum_probs=46.6
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCC--CCCHHHHHHHHHHHHhc
Q 047163 177 NIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQNPDHHKIQDKLAFGLGMEFGF--NENMFQRASRLCERLKK 254 (658)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~~l~~~l~~ 254 (658)
.++.|.|..|.||||+|..+..+.... -..++.+. ..++.......+++.++..... .....+....+.+ ..
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~--g~~v~i~k--~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~--~~ 76 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEER--GMKVLVFK--PAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE--EG 76 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHc--CCeEEEEe--ccccccccCCcEecCCCCcccceEeCChHHHHHHHHh--hC
Confidence 477899999999999999999887543 22333332 1112222233455555543221 1122333333333 33
Q ss_pred CCeEEEEEecCC
Q 047163 255 EKRLLIILDNIW 266 (658)
Q Consensus 255 ~k~~LlVlDdv~ 266 (658)
++.-+||+|.+.
T Consensus 77 ~~~dvviIDEaq 88 (190)
T PRK04296 77 EKIDCVLIDEAQ 88 (190)
T ss_pred CCCCEEEEEccc
Confidence 344589999983
No 288
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=95.33 E-value=0.079 Score=49.94 Aligned_cols=56 Identities=16% Similarity=0.227 Sum_probs=42.1
Q ss_pred cCcccccccccchHHHHHHHHHHh----ccCCccEEEEEcCCCChHHHHHHHHHHHhhhc
Q 047163 148 HMQVKDFEAFDSKMEVFQDVMEAL----KDDKLNIIGVYGMGGVGKTTLVKQVAKQVMED 203 (658)
Q Consensus 148 ~~~~~~~~~~~gr~~~~~~l~~~l----~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 203 (658)
..++.+...++|-|...+.|++-- ..-...-|.+||-.|.||+.|++.+.+....+
T Consensus 53 ~~~~i~L~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~ 112 (287)
T COG2607 53 DPDPIDLADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYADE 112 (287)
T ss_pred CCCCcCHHHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHHhc
Confidence 344455667888887777776543 23445678999999999999999999998754
No 289
>PRK06835 DNA replication protein DnaC; Validated
Probab=95.32 E-value=0.13 Score=52.53 Aligned_cols=36 Identities=28% Similarity=0.449 Sum_probs=28.8
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEE
Q 047163 177 NIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEV 214 (658)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v 214 (658)
.-+.++|..|+|||+||..+++....+. ..++++++
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g--~~V~y~t~ 219 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRG--KSVIYRTA 219 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCC--CeEEEEEH
Confidence 6799999999999999999999886532 24566654
No 290
>PRK00625 shikimate kinase; Provisional
Probab=95.30 E-value=0.015 Score=53.47 Aligned_cols=24 Identities=38% Similarity=0.404 Sum_probs=21.6
Q ss_pred EEEEEcCCCChHHHHHHHHHHHhh
Q 047163 178 IIGVYGMGGVGKTTLVKQVAKQVM 201 (658)
Q Consensus 178 vi~I~G~gGiGKTtLa~~v~~~~~ 201 (658)
.|.++||+|+||||+++.+.+...
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~ 25 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLS 25 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 488999999999999999988764
No 291
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=95.28 E-value=0.077 Score=55.89 Aligned_cols=99 Identities=18% Similarity=0.196 Sum_probs=58.2
Q ss_pred cchHHHHHHHHHHhccCCccEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCC
Q 047163 158 DSKMEVFQDVMEALKDDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQNPDHHKIQDKLAFGLGMEFGF 237 (658)
Q Consensus 158 ~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~ 237 (658)
..|.....++++.+..... ++.|.|+.++||||+++.+....... .++++..+......-.
T Consensus 20 ~~~~~~~~~l~~~~~~~~~-i~~i~GpR~~GKTtll~~l~~~~~~~-----~iy~~~~d~~~~~~~l------------- 80 (398)
T COG1373 20 IERRKLLPRLIKKLDLRPF-IILILGPRQVGKTTLLKLLIKGLLEE-----IIYINFDDLRLDRIEL------------- 80 (398)
T ss_pred hhHHhhhHHHHhhcccCCc-EEEEECCccccHHHHHHHHHhhCCcc-----eEEEEecchhcchhhH-------------
Confidence 3455666667666643333 99999999999999997666555332 5555543332111100
Q ss_pred CCCHHHHHHHHHHHHhcCCeEEEEEecCCcccCcccccCcccC
Q 047163 238 NENMFQRASRLCERLKKEKRLLIILDNIWIELEFDKIGIPSGN 280 (658)
Q Consensus 238 ~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~~l~~~~~~ 280 (658)
.+....+...-. .++.+|+||.|.....|......+.+
T Consensus 81 ----~d~~~~~~~~~~-~~~~yifLDEIq~v~~W~~~lk~l~d 118 (398)
T COG1373 81 ----LDLLRAYIELKE-REKSYIFLDEIQNVPDWERALKYLYD 118 (398)
T ss_pred ----HHHHHHHHHhhc-cCCceEEEecccCchhHHHHHHHHHc
Confidence 111112222222 26789999999999998765444433
No 292
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=95.28 E-value=0.12 Score=48.57 Aligned_cols=89 Identities=21% Similarity=0.204 Sum_probs=48.4
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHhhhccCC--------CEEEEEEEcCCCCHHHHHHHHHHhcCCC--------------
Q 047163 177 NIIGVYGMGGVGKTTLVKQVAKQVMEDKLF--------DKVVMAEVTQNPDHHKIQDKLAFGLGME-------------- 234 (658)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F--------~~~~wv~v~~~~~~~~~~~~i~~~l~~~-------------- 234 (658)
.++.|.|.+|+||||++..+.........| ..++|++.... ..++.+.+.......
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~--~~~~~~rl~~~~~~~~~~~~~~~~~~~~~ 110 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS--ESQIARRLRALLQDYDDDANLFFVDLSNW 110 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS---HHHHHHHHHHHHTTS-HHHHHHHHHH--E
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC--HHHHHHHHHHHhcccCCccceEEeecccc
Confidence 388999999999999999999887754333 25678776555 333333332211100
Q ss_pred --------CCCCCCHHHHHHHHHHHHhc-CCeEEEEEecCCc
Q 047163 235 --------FGFNENMFQRASRLCERLKK-EKRLLIILDNIWI 267 (658)
Q Consensus 235 --------~~~~~~~~~~~~~l~~~l~~-~k~~LlVlDdv~~ 267 (658)
...........+.+.+.+.. .+--++|+|.+..
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~lvviD~l~~ 152 (193)
T PF13481_consen 111 GCIRLFEPDSGGPLLDEDLEELEAALKELYGPDLVVIDPLQS 152 (193)
T ss_dssp -EE---TTS---TTSHHHHHHHHHHHTT----SEEEEE-GGG
T ss_pred ccceeeecccccccchHHHHHHHHHHhhcCCCcEEEEcCHHH
Confidence 00000113344566666654 3456999999864
No 293
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.26 E-value=0.14 Score=53.77 Aligned_cols=87 Identities=18% Similarity=0.238 Sum_probs=47.8
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCC-CCHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhc
Q 047163 176 LNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQN-PDHHKIQDKLAFGLGMEFGFNENMFQRASRLCERLKK 254 (658)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 254 (658)
-.+++++|..|+||||++..+............+..+..... ....+-+....+.++.+.....+..+.. .....+.
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~-~al~~l~- 268 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQ-LMLHELR- 268 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHH-HHHHHhc-
Confidence 369999999999999999988876432222233444443221 1222334455566666544233333333 2233343
Q ss_pred CCeEEEEEecC
Q 047163 255 EKRLLIILDNI 265 (658)
Q Consensus 255 ~k~~LlVlDdv 265 (658)
.+-++++|-.
T Consensus 269 -~~d~VLIDTa 278 (420)
T PRK14721 269 -GKHMVLIDTV 278 (420)
T ss_pred -CCCEEEecCC
Confidence 3456667754
No 294
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=95.24 E-value=0.039 Score=48.69 Aligned_cols=39 Identities=21% Similarity=0.412 Sum_probs=28.9
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcC
Q 047163 177 NIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQ 216 (658)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~ 216 (658)
++|.|+|..|+|||||++.+.+.... ..+...+..+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~-~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKR-RGYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHH-TT--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhH-cCCceEEEEEccC
Confidence 48999999999999999999999875 3455555666554
No 295
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.24 E-value=0.0079 Score=34.04 Aligned_cols=19 Identities=26% Similarity=0.366 Sum_probs=10.4
Q ss_pred CcEEEccCccCCccchhhc
Q 047163 572 LEILRLRHSYTERLPLEIG 590 (658)
Q Consensus 572 L~~L~l~~~~~~~lp~~~~ 590 (658)
|++|++++|.++.+|++++
T Consensus 2 L~~Ldls~n~l~~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSFS 20 (22)
T ss_dssp ESEEEETSSEESEEGTTTT
T ss_pred ccEEECCCCcCEeCChhhc
Confidence 5555555555555555444
No 296
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=95.24 E-value=0.04 Score=63.78 Aligned_cols=107 Identities=15% Similarity=0.219 Sum_probs=61.0
Q ss_pred cccccchHHHHHHHHHHhcc---------CCccEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCCCCHHHHH
Q 047163 154 FEAFDSKMEVFQDVMEALKD---------DKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQNPDHHKIQ 224 (658)
Q Consensus 154 ~~~~~gr~~~~~~l~~~l~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~ 224 (658)
...++|.+..++.+.+.+.. ....++.++|+.|+|||.+|+.++...-.. ....+-+++++-...
T Consensus 565 ~~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~--~~~~~~~dmse~~~~---- 638 (852)
T TIGR03345 565 AERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGG--EQNLITINMSEFQEA---- 638 (852)
T ss_pred cCeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCC--CcceEEEeHHHhhhh----
Confidence 35678999999998888741 123478999999999999999998776321 122233333322111
Q ss_pred HHHHHhcCCCCCCCCCHHHHHHHHHHHHhcCCeEEEEEecCCcc
Q 047163 225 DKLAFGLGMEFGFNENMFQRASRLCERLKKEKRLLIILDNIWIE 268 (658)
Q Consensus 225 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~ 268 (658)
..+..-++.+.. .... +....+.+.++.....+|+||++...
T Consensus 639 ~~~~~l~g~~~g-yvg~-~~~g~L~~~v~~~p~svvllDEieka 680 (852)
T TIGR03345 639 HTVSRLKGSPPG-YVGY-GEGGVLTEAVRRKPYSVVLLDEVEKA 680 (852)
T ss_pred hhhccccCCCCC-cccc-cccchHHHHHHhCCCcEEEEechhhc
Confidence 111122232222 1110 11123445555456779999999643
No 297
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=95.23 E-value=0.16 Score=55.28 Aligned_cols=111 Identities=22% Similarity=0.232 Sum_probs=75.3
Q ss_pred cccccchHHHHHHHHHHhc----c-CCccEEEEEcCCCChHHHHHHHHHHHhhh---c---cCCCEEEEEEEcCCCCHHH
Q 047163 154 FEAFDSKMEVFQDVMEALK----D-DKLNIIGVYGMGGVGKTTLVKQVAKQVME---D---KLFDKVVMAEVTQNPDHHK 222 (658)
Q Consensus 154 ~~~~~gr~~~~~~l~~~l~----~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~---~---~~F~~~~wv~v~~~~~~~~ 222 (658)
+..+-+|+.+..+|..++. + +.-+.+.|.|.+|.|||+.+..|.+.... + ..|+ .+.|+.-.-....+
T Consensus 395 p~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~-yveINgm~l~~~~~ 473 (767)
T KOG1514|consen 395 PESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFD-YVEINGLRLASPRE 473 (767)
T ss_pred cccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCcc-EEEEcceeecCHHH
Confidence 3445689999999988775 3 33458999999999999999999986542 1 2232 23444434457899
Q ss_pred HHHHHHHhcCCCCCCCCCHHHHHHHHHHHHh----cCCeEEEEEecCCcc
Q 047163 223 IQDKLAFGLGMEFGFNENMFQRASRLCERLK----KEKRLLIILDNIWIE 268 (658)
Q Consensus 223 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~ 268 (658)
+...|+..+..... ......+.+..++. ..+.+++++|+++..
T Consensus 474 ~Y~~I~~~lsg~~~---~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~L 520 (767)
T KOG1514|consen 474 IYEKIWEALSGERV---TWDAALEALNFRFTVPKPKRSTTVVLIDELDIL 520 (767)
T ss_pred HHHHHHHhcccCcc---cHHHHHHHHHHhhccCCCCCCCEEEEeccHHHH
Confidence 99999999876543 22233344444443 246789999987643
No 298
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=95.23 E-value=0.057 Score=55.00 Aligned_cols=85 Identities=26% Similarity=0.309 Sum_probs=56.3
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCCCCHHHHHHHHHHhcCCCCC-CCCCHHHHHHHHHHHHhcC
Q 047163 177 NIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQNPDHHKIQDKLAFGLGMEFG-FNENMFQRASRLCERLKKE 255 (658)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~-~~~~~~~~~~~l~~~l~~~ 255 (658)
.+|.|-|-+|+|||||..++..+...+. .+.+|+-.+. ..++ +--++.++.+.. ...-.+...+.+.+.+...
T Consensus 94 s~iLIgGdPGIGKSTLLLQva~~lA~~~---~vLYVsGEES--~~Qi-klRA~RL~~~~~~l~l~aEt~~e~I~~~l~~~ 167 (456)
T COG1066 94 SVILIGGDPGIGKSTLLLQVAARLAKRG---KVLYVSGEES--LQQI-KLRADRLGLPTNNLYLLAETNLEDIIAELEQE 167 (456)
T ss_pred cEEEEccCCCCCHHHHHHHHHHHHHhcC---cEEEEeCCcC--HHHH-HHHHHHhCCCccceEEehhcCHHHHHHHHHhc
Confidence 5899999999999999999999987643 6777765444 3322 223445553322 1111233445566666667
Q ss_pred CeEEEEEecCCc
Q 047163 256 KRLLIILDNIWI 267 (658)
Q Consensus 256 k~~LlVlDdv~~ 267 (658)
+.-++|+|-+.+
T Consensus 168 ~p~lvVIDSIQT 179 (456)
T COG1066 168 KPDLVVIDSIQT 179 (456)
T ss_pred CCCEEEEeccce
Confidence 889999998864
No 299
>PRK04040 adenylate kinase; Provisional
Probab=95.22 E-value=0.018 Score=53.81 Aligned_cols=25 Identities=32% Similarity=0.594 Sum_probs=22.9
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHhh
Q 047163 177 NIIGVYGMGGVGKTTLVKQVAKQVM 201 (658)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (658)
.+|+|+|++|+||||+++.+.....
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHhc
Confidence 5899999999999999999998874
No 300
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=95.20 E-value=0.049 Score=61.82 Aligned_cols=103 Identities=19% Similarity=0.248 Sum_probs=59.7
Q ss_pred ccccchHHHHHHHHHHhcc---------CCccEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCCCCHHHHHH
Q 047163 155 EAFDSKMEVFQDVMEALKD---------DKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQNPDHHKIQD 225 (658)
Q Consensus 155 ~~~~gr~~~~~~l~~~l~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~ 225 (658)
..++|.+..++.+.+.+.. .....+.++|+.|+|||++|+.++.... ...+.+++++-.....
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~-----~~~i~id~se~~~~~~--- 529 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG-----IELLRFDMSEYMERHT--- 529 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhC-----CCcEEeechhhccccc---
Confidence 3468888888888887751 1235688999999999999999988763 1233445443322111
Q ss_pred HHHHhcCCCCCCCCCHHHHHHHHHHHHhcCCeEEEEEecCCcc
Q 047163 226 KLAFGLGMEFGFNENMFQRASRLCERLKKEKRLLIILDNIWIE 268 (658)
Q Consensus 226 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~ 268 (658)
+..-++.+.. ... .+....+.+.++.....+|+||++...
T Consensus 530 -~~~LiG~~~g-yvg-~~~~g~L~~~v~~~p~sVlllDEieka 569 (758)
T PRK11034 530 -VSRLIGAPPG-YVG-FDQGGLLTDAVIKHPHAVLLLDEIEKA 569 (758)
T ss_pred -HHHHcCCCCC-ccc-ccccchHHHHHHhCCCcEEEeccHhhh
Confidence 1222232221 100 011123344444345579999999765
No 301
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=95.19 E-value=0.042 Score=53.62 Aligned_cols=59 Identities=22% Similarity=0.390 Sum_probs=43.4
Q ss_pred HHHHHHhc--cCCccEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCCCCHHHH
Q 047163 165 QDVMEALK--DDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQNPDHHKI 223 (658)
Q Consensus 165 ~~l~~~l~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~ 223 (658)
.+|+..+. .++..+|+|.|.+|+|||||.-.+......+.+=-.++=|+-|.+++--.+
T Consensus 38 ~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsi 98 (323)
T COG1703 38 RELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSI 98 (323)
T ss_pred HHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccc
Confidence 34555544 577889999999999999999999999877655455666666666644333
No 302
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=95.17 E-value=0.13 Score=49.78 Aligned_cols=48 Identities=15% Similarity=0.201 Sum_probs=31.7
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCCCCHHHHHHHH
Q 047163 176 LNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQNPDHHKIQDKL 227 (658)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i 227 (658)
-.++.|.|.+|+||||+|.++......+. ..+++++... +..++.+.+
T Consensus 24 g~~~~i~G~~G~GKTtl~~~~~~~~~~~g--~~~~yi~~e~--~~~~~~~~~ 71 (230)
T PRK08533 24 GSLILIEGDESTGKSILSQRLAYGFLQNG--YSVSYVSTQL--TTTEFIKQM 71 (230)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhCC--CcEEEEeCCC--CHHHHHHHH
Confidence 34899999999999999877666543221 3456666433 345555554
No 303
>PRK04328 hypothetical protein; Provisional
Probab=95.14 E-value=0.12 Score=50.83 Aligned_cols=41 Identities=20% Similarity=0.251 Sum_probs=31.7
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCCC
Q 047163 176 LNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQNP 218 (658)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~ 218 (658)
-.++.|.|.+|+|||+||.++......+ -..++|++..+.+
T Consensus 23 gs~ili~G~pGsGKT~l~~~fl~~~~~~--ge~~lyis~ee~~ 63 (249)
T PRK04328 23 RNVVLLSGGPGTGKSIFSQQFLWNGLQM--GEPGVYVALEEHP 63 (249)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhc--CCcEEEEEeeCCH
Confidence 4589999999999999999977664322 4567888876653
No 304
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=95.14 E-value=0.014 Score=55.14 Aligned_cols=23 Identities=43% Similarity=0.757 Sum_probs=21.2
Q ss_pred EEEEEcCCCChHHHHHHHHHHHh
Q 047163 178 IIGVYGMGGVGKTTLVKQVAKQV 200 (658)
Q Consensus 178 vi~I~G~gGiGKTtLa~~v~~~~ 200 (658)
+|+|.|.+|+||||+|+.+....
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998875
No 305
>CHL00095 clpC Clp protease ATP binding subunit
Probab=95.14 E-value=0.065 Score=62.22 Aligned_cols=107 Identities=20% Similarity=0.302 Sum_probs=61.3
Q ss_pred cccccchHHHHHHHHHHhcc-------CC--ccEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCCCCHHHHH
Q 047163 154 FEAFDSKMEVFQDVMEALKD-------DK--LNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQNPDHHKIQ 224 (658)
Q Consensus 154 ~~~~~gr~~~~~~l~~~l~~-------~~--~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~ 224 (658)
...++|.+..++.+.+.+.. .+ ..++.++|+.|+|||+||+.+++..-.. -...+-++.++-.+...+.
T Consensus 508 ~~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~--~~~~~~~d~s~~~~~~~~~ 585 (821)
T CHL00095 508 HKRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGS--EDAMIRLDMSEYMEKHTVS 585 (821)
T ss_pred cCcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCC--ccceEEEEchhccccccHH
Confidence 35678999999998887751 11 2356799999999999999999876321 1234445554432222221
Q ss_pred HHHHHhcCCCCCCCCCHHHHHHHHHHHHhcCCeEEEEEecCCcc
Q 047163 225 DKLAFGLGMEFGFNENMFQRASRLCERLKKEKRLLIILDNIWIE 268 (658)
Q Consensus 225 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~ 268 (658)
+ .++.+.. ... .+....+.+.++.....+++||+++..
T Consensus 586 ~----l~g~~~g-yvg-~~~~~~l~~~~~~~p~~VvllDeieka 623 (821)
T CHL00095 586 K----LIGSPPG-YVG-YNEGGQLTEAVRKKPYTVVLFDEIEKA 623 (821)
T ss_pred H----hcCCCCc-ccC-cCccchHHHHHHhCCCeEEEECChhhC
Confidence 1 1222211 000 011123445555434468999999754
No 306
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=95.13 E-value=0.089 Score=47.10 Aligned_cols=24 Identities=25% Similarity=0.632 Sum_probs=21.8
Q ss_pred EEEEEcCCCChHHHHHHHHHHHhh
Q 047163 178 IIGVYGMGGVGKTTLVKQVAKQVM 201 (658)
Q Consensus 178 vi~I~G~gGiGKTtLa~~v~~~~~ 201 (658)
+|.|+|.+|+||||+|+.+.....
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~ 24 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLF 24 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999998875
No 307
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.12 E-value=0.035 Score=60.10 Aligned_cols=72 Identities=28% Similarity=0.251 Sum_probs=46.9
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCCC--CHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhc
Q 047163 177 NIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQNP--DHHKIQDKLAFGLGMEFGFNENMFQRASRLCERLKK 254 (658)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 254 (658)
.-|.|.|..|+|||+||+.+++... +.+.-.+..++++.-. ....+++.+... +.+.+.
T Consensus 432 ~~Ill~G~~GsGKT~L~kal~~~~~-k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~v-----------------fse~~~- 492 (952)
T KOG0735|consen 432 GNILLNGPKGSGKTNLVKALFDYYS-KDLIAHVEIVSCSTLDGSSLEKIQKFLNNV-----------------FSEALW- 492 (952)
T ss_pred ccEEEeCCCCCCHhHHHHHHHHHhc-cccceEEEEEechhccchhHHHHHHHHHHH-----------------HHHHHh-
Confidence 4688999999999999999999887 3444456667665431 233333333211 122233
Q ss_pred CCeEEEEEecCCc
Q 047163 255 EKRLLIILDNIWI 267 (658)
Q Consensus 255 ~k~~LlVlDdv~~ 267 (658)
-..-+|||||++.
T Consensus 493 ~~PSiIvLDdld~ 505 (952)
T KOG0735|consen 493 YAPSIIVLDDLDC 505 (952)
T ss_pred hCCcEEEEcchhh
Confidence 2578999999974
No 308
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=95.11 E-value=0.062 Score=62.59 Aligned_cols=107 Identities=21% Similarity=0.352 Sum_probs=61.9
Q ss_pred cccccchHHHHHHHHHHhccC---------CccEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCCCCHHHHH
Q 047163 154 FEAFDSKMEVFQDVMEALKDD---------KLNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQNPDHHKIQ 224 (658)
Q Consensus 154 ~~~~~gr~~~~~~l~~~l~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~ 224 (658)
...++|.+..++.+.+.+... ...++.++|+.|+|||++|+.+....... -...+.++++.-.....+
T Consensus 564 ~~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~--~~~~i~~d~s~~~~~~~~- 640 (852)
T TIGR03346 564 HERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDD--EDAMVRIDMSEYMEKHSV- 640 (852)
T ss_pred hcccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCC--CCcEEEEechhhcccchH-
Confidence 345789999999988887521 13468899999999999999999876422 123445555543221111
Q ss_pred HHHHHhcCCCCCCCCCHHHHHHHHHHHHhcCCeEEEEEecCCcc
Q 047163 225 DKLAFGLGMEFGFNENMFQRASRLCERLKKEKRLLIILDNIWIE 268 (658)
Q Consensus 225 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~ 268 (658)
.. .++.+.. .... +....+.+.++.....+|+||++...
T Consensus 641 ~~---l~g~~~g-~~g~-~~~g~l~~~v~~~p~~vlllDeieka 679 (852)
T TIGR03346 641 AR---LIGAPPG-YVGY-EEGGQLTEAVRRKPYSVVLFDEVEKA 679 (852)
T ss_pred HH---hcCCCCC-ccCc-ccccHHHHHHHcCCCcEEEEeccccC
Confidence 11 1222221 0000 01123444444334569999999754
No 309
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=95.10 E-value=0.099 Score=58.89 Aligned_cols=85 Identities=15% Similarity=0.151 Sum_probs=58.2
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCCCCHHHHHHHHHHhcCCCCC-----CCCCHHHHHHHHHH
Q 047163 176 LNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQNPDHHKIQDKLAFGLGMEFG-----FNENMFQRASRLCE 250 (658)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~~ 250 (658)
-+++-|.|.+|+||||||.+++...... =..++|++..+.++.. .++.++.+.. .....++....+..
T Consensus 60 GsiteI~G~~GsGKTtLal~~~~~a~~~--G~~v~yId~E~t~~~~-----~A~~lGvDl~~llv~~~~~~E~~l~~i~~ 132 (790)
T PRK09519 60 GRVIEIYGPESSGKTTVALHAVANAQAA--GGVAAFIDAEHALDPD-----YAKKLGVDTDSLLVSQPDTGEQALEIADM 132 (790)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEECCccchhHH-----HHHHcCCChhHeEEecCCCHHHHHHHHHH
Confidence 4588899999999999998876654322 3567899988777642 5666665432 12334445555556
Q ss_pred HHhcCCeEEEEEecCCc
Q 047163 251 RLKKEKRLLIILDNIWI 267 (658)
Q Consensus 251 ~l~~~k~~LlVlDdv~~ 267 (658)
.++.++--|||+|-+..
T Consensus 133 lv~~~~~~LVVIDSI~a 149 (790)
T PRK09519 133 LIRSGALDIVVIDSVAA 149 (790)
T ss_pred HhhcCCCeEEEEcchhh
Confidence 56656777999999863
No 310
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=95.08 E-value=0.089 Score=60.48 Aligned_cols=93 Identities=20% Similarity=0.213 Sum_probs=57.3
Q ss_pred cccccchHHHHHHHHHHhc-------------cCCccEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCCCCH
Q 047163 154 FEAFDSKMEVFQDVMEALK-------------DDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQNPDH 220 (658)
Q Consensus 154 ~~~~~gr~~~~~~l~~~l~-------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~ 220 (658)
...+.|.+..++.|.+.+. -...+-+.++|++|+|||++|+.+++.... .| +.++..
T Consensus 452 ~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~--~f-----i~v~~~--- 521 (733)
T TIGR01243 452 WSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGA--NF-----IAVRGP--- 521 (733)
T ss_pred hhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCC--CE-----EEEehH---
Confidence 4456777777766655442 012345889999999999999999987642 12 222211
Q ss_pred HHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhcCCeEEEEEecCCc
Q 047163 221 HKIQDKLAFGLGMEFGFNENMFQRASRLCERLKKEKRLLIILDNIWI 267 (658)
Q Consensus 221 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~ 267 (658)
+++... ....+.....++...+....++|+||+++.
T Consensus 522 -----~l~~~~------vGese~~i~~~f~~A~~~~p~iifiDEid~ 557 (733)
T TIGR01243 522 -----EILSKW------VGESEKAIREIFRKARQAAPAIIFFDEIDA 557 (733)
T ss_pred -----HHhhcc------cCcHHHHHHHHHHHHHhcCCEEEEEEChhh
Confidence 111111 112234556666666556779999999974
No 311
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=95.08 E-value=0.038 Score=53.97 Aligned_cols=72 Identities=24% Similarity=0.264 Sum_probs=56.6
Q ss_pred CcccccccccchHHHHHHHHHHhccCCccEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEE-EEEEcCCCCH
Q 047163 149 MQVKDFEAFDSKMEVFQDVMEALKDDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVV-MAEVTQNPDH 220 (658)
Q Consensus 149 ~~~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~-wv~v~~~~~~ 220 (658)
..|....+++|.+..+..|.+.+.....++...+|++|.|||+-|+.++...-..+.|.+.+ =.|+|.....
T Consensus 30 YrPkt~de~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGi 102 (346)
T KOG0989|consen 30 YRPKTFDELAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGI 102 (346)
T ss_pred hCCCcHHhhcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccccccc
Confidence 34566778899999999999998877788999999999999999999998876656666543 3455555433
No 312
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=95.04 E-value=0.072 Score=56.85 Aligned_cols=73 Identities=18% Similarity=0.287 Sum_probs=44.7
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhcC
Q 047163 176 LNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQNPDHHKIQDKLAFGLGMEFGFNENMFQRASRLCERLKKE 255 (658)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 255 (658)
...+.|+|..|+|||+|++.+++..... -..+++++. ..+...+...+... ....+...++
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~~~--~~~v~yi~~------~~f~~~~~~~l~~~---------~~~~f~~~~~-- 201 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALRES--GGKILYVRS------ELFTEHLVSAIRSG---------EMQRFRQFYR-- 201 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHc--CCCEEEeeH------HHHHHHHHHHHhcc---------hHHHHHHHcc--
Confidence 3568999999999999999999987642 223455542 33444444443211 1122333333
Q ss_pred CeEEEEEecCCc
Q 047163 256 KRLLIILDNIWI 267 (658)
Q Consensus 256 k~~LlVlDdv~~ 267 (658)
+.-++++||+..
T Consensus 202 ~~dvLiIDDiq~ 213 (445)
T PRK12422 202 NVDALFIEDIEV 213 (445)
T ss_pred cCCEEEEcchhh
Confidence 345888999864
No 313
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=95.04 E-value=0.15 Score=54.09 Aligned_cols=91 Identities=22% Similarity=0.327 Sum_probs=58.8
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCCC-CHHHHHHHHHHhcCCCC------CCCCCHH------H
Q 047163 177 NIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQNP-DHHKIQDKLAFGLGMEF------GFNENMF------Q 243 (658)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~-~~~~~~~~i~~~l~~~~------~~~~~~~------~ 243 (658)
..++|.|.+|+|||||+.++.+..... +-+.++++-+++.. ...++.+.+...-.... ....+.. .
T Consensus 144 QR~gIfa~~G~GKt~Ll~~~~~~~~~~-~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~a~~ 222 (461)
T PRK12597 144 GKTGLFGGAGVGKTVLMMELIFNISKQ-HSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMRVVL 222 (461)
T ss_pred CEEEeecCCCCChhHHHHHHHHHHHhh-CCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHHHHH
Confidence 479999999999999999999887643 56788888887765 34455555554321110 0011111 1
Q ss_pred HHHHHHHHHh-c-CCeEEEEEecCCcc
Q 047163 244 RASRLCERLK-K-EKRLLIILDNIWIE 268 (658)
Q Consensus 244 ~~~~l~~~l~-~-~k~~LlVlDdv~~~ 268 (658)
.+-.+-++++ . ++++|+++|++...
T Consensus 223 ~a~tiAEyfrd~~G~~VLl~~DslTR~ 249 (461)
T PRK12597 223 TGLTIAEYLRDEEKEDVLLFIDNIFRF 249 (461)
T ss_pred HHHHHHHHHHHhcCCceEEEeccchHH
Confidence 2233455554 2 79999999999654
No 314
>PRK10865 protein disaggregation chaperone; Provisional
Probab=95.03 E-value=0.082 Score=61.41 Aligned_cols=107 Identities=20% Similarity=0.252 Sum_probs=59.9
Q ss_pred cccccchHHHHHHHHHHhcc--------CC-ccEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCCCCHHHHH
Q 047163 154 FEAFDSKMEVFQDVMEALKD--------DK-LNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQNPDHHKIQ 224 (658)
Q Consensus 154 ~~~~~gr~~~~~~l~~~l~~--------~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~ 224 (658)
...++|.+..++.+...+.. +. ..++.++|+.|+|||++|+.+++..... -...+.++++.-.. ....
T Consensus 567 ~~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~--~~~~i~id~se~~~-~~~~ 643 (857)
T PRK10865 567 HHRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDS--DDAMVRIDMSEFME-KHSV 643 (857)
T ss_pred CCeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcC--CCcEEEEEhHHhhh-hhhH
Confidence 34578999988888877751 11 2478899999999999999999766321 12334555543211 1111
Q ss_pred HHHHHhcCCCCCCCCCHHHHHHHHHHHHhcCCeEEEEEecCCcc
Q 047163 225 DKLAFGLGMEFGFNENMFQRASRLCERLKKEKRLLIILDNIWIE 268 (658)
Q Consensus 225 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~ 268 (658)
. .-++.+.. ..... ....+.+.++....-+|+|||+...
T Consensus 644 ~---~LiG~~pg-y~g~~-~~g~l~~~v~~~p~~vLllDEieka 682 (857)
T PRK10865 644 S---RLVGAPPG-YVGYE-EGGYLTEAVRRRPYSVILLDEVEKA 682 (857)
T ss_pred H---HHhCCCCc-ccccc-hhHHHHHHHHhCCCCeEEEeehhhC
Confidence 1 12232222 11111 1122334444334469999999743
No 315
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=95.03 E-value=0.057 Score=51.92 Aligned_cols=57 Identities=19% Similarity=0.337 Sum_probs=36.9
Q ss_pred HHHHHHHhc--cCCccEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCCCCH
Q 047163 164 FQDVMEALK--DDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQNPDH 220 (658)
Q Consensus 164 ~~~l~~~l~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~ 220 (658)
..++++.+. .++..+|+|.|++|+|||||.-.+......+.+=-.++=|+-|.+++-
T Consensus 15 ~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tG 73 (266)
T PF03308_consen 15 ARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTG 73 (266)
T ss_dssp HHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC-
T ss_pred HHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCC
Confidence 344555554 456789999999999999999999998876433334555555555543
No 316
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=95.01 E-value=0.052 Score=60.20 Aligned_cols=81 Identities=14% Similarity=0.190 Sum_probs=59.2
Q ss_pred CcccccccccchHHHHHHHHHHhccCCccEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCCCCHHHHHHHHH
Q 047163 149 MQVKDFEAFDSKMEVFQDVMEALKDDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQNPDHHKIQDKLA 228 (658)
Q Consensus 149 ~~~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~ 228 (658)
.++.....++|.+..++.|...+... +.+.++|.+|+||||+|+.+.+.... ..++..+|..- ...+...+++.+.
T Consensus 25 ~~~~~~~~vigq~~a~~~L~~~~~~~--~~~l~~G~~G~GKttla~~l~~~l~~-~~~~~~~~~~n-p~~~~~~~~~~v~ 100 (637)
T PRK13765 25 VPERLIDQVIGQEHAVEVIKKAAKQR--RHVMMIGSPGTGKSMLAKAMAELLPK-EELQDILVYPN-PEDPNNPKIRTVP 100 (637)
T ss_pred cCcccHHHcCChHHHHHHHHHHHHhC--CeEEEECCCCCcHHHHHHHHHHHcCh-HhHHHheEeeC-CCcchHHHHHHHH
Confidence 34456777899999988887776554 47899999999999999999987643 34677778654 3346666777776
Q ss_pred HhcCC
Q 047163 229 FGLGM 233 (658)
Q Consensus 229 ~~l~~ 233 (658)
.+++.
T Consensus 101 ~~~G~ 105 (637)
T PRK13765 101 AGKGK 105 (637)
T ss_pred HhcCH
Confidence 65543
No 317
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=95.01 E-value=0.029 Score=50.12 Aligned_cols=35 Identities=29% Similarity=0.445 Sum_probs=27.8
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEE
Q 047163 177 NIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAE 213 (658)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~ 213 (658)
.+|-|.|.+|+||||||+.+....... -..+.+++
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~~L~~~--g~~~~~LD 37 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALERRLFAR--GIKVYLLD 37 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHT--TS-EEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEec
Confidence 478999999999999999999998754 23455554
No 318
>PRK00131 aroK shikimate kinase; Reviewed
Probab=95.00 E-value=0.024 Score=52.29 Aligned_cols=26 Identities=31% Similarity=0.344 Sum_probs=23.4
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHHhh
Q 047163 176 LNIIGVYGMGGVGKTTLVKQVAKQVM 201 (658)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (658)
...|.|+|++|+||||+|+.++....
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l~ 29 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRLG 29 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhC
Confidence 45899999999999999999998874
No 319
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=95.00 E-value=0.018 Score=53.45 Aligned_cols=23 Identities=39% Similarity=0.668 Sum_probs=21.3
Q ss_pred EEEEEcCCCChHHHHHHHHHHHh
Q 047163 178 IIGVYGMGGVGKTTLVKQVAKQV 200 (658)
Q Consensus 178 vi~I~G~gGiGKTtLa~~v~~~~ 200 (658)
+|+|.|.+|+||||+|+.+....
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999875
No 320
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.97 E-value=0.12 Score=58.03 Aligned_cols=88 Identities=17% Similarity=0.167 Sum_probs=51.7
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCC-CCHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhc
Q 047163 176 LNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQN-PDHHKIQDKLAFGLGMEFGFNENMFQRASRLCERLKK 254 (658)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 254 (658)
.+||+++|+.|+||||.+..++........-..+..++.... .....-++...+.++.+.....+..+. ....+.+.
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l-~~al~~~~- 262 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADL-RFALAALG- 262 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHH-HHHHHHhc-
Confidence 369999999999999999999877643221234555554321 123344555566666655423333333 33334444
Q ss_pred CCeEEEEEecCC
Q 047163 255 EKRLLIILDNIW 266 (658)
Q Consensus 255 ~k~~LlVlDdv~ 266 (658)
++ =+|++|-.-
T Consensus 263 ~~-D~VLIDTAG 273 (767)
T PRK14723 263 DK-HLVLIDTVG 273 (767)
T ss_pred CC-CEEEEeCCC
Confidence 33 478888775
No 321
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=94.96 E-value=0.042 Score=56.15 Aligned_cols=47 Identities=28% Similarity=0.341 Sum_probs=39.4
Q ss_pred cccccchHHHHHHHHHHhccCCccEEEEEcCCCChHHHHHHHHHHHh
Q 047163 154 FEAFDSKMEVFQDVMEALKDDKLNIIGVYGMGGVGKTTLVKQVAKQV 200 (658)
Q Consensus 154 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 200 (658)
...++|.+..+..++-.+.+....-+.|.|..|.|||||++.+..-.
T Consensus 3 f~~ivgq~~~~~al~~~~~~~~~g~vli~G~~G~gKttl~r~~~~~~ 49 (337)
T TIGR02030 3 FTAIVGQDEMKLALLLNVIDPKIGGVMVMGDRGTGKSTAVRALAALL 49 (337)
T ss_pred ccccccHHHHHHHHHHHhcCCCCCeEEEEcCCCCCHHHHHHHHHHhh
Confidence 45688999999888766667666778899999999999999998665
No 322
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.96 E-value=0.12 Score=55.10 Aligned_cols=88 Identities=19% Similarity=0.219 Sum_probs=47.0
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCC-CCHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhc
Q 047163 176 LNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQN-PDHHKIQDKLAFGLGMEFGFNENMFQRASRLCERLKK 254 (658)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 254 (658)
.+|++++|+.|+||||++..++.....+..-..+..++.... ....+-++...+.++.+........+....+ ..+.
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~~~~~~Dl~~aL-~~L~- 333 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAADLRLAL-SELR- 333 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCeeccCCchhHHHHH-Hhcc-
Confidence 369999999999999999999987654321223445554321 1222223333455554433122222222222 2233
Q ss_pred CCeEEEEEecCC
Q 047163 255 EKRLLIILDNIW 266 (658)
Q Consensus 255 ~k~~LlVlDdv~ 266 (658)
.+..+++|-.-
T Consensus 334 -d~d~VLIDTaG 344 (484)
T PRK06995 334 -NKHIVLIDTIG 344 (484)
T ss_pred -CCCeEEeCCCC
Confidence 33577777654
No 323
>PRK06851 hypothetical protein; Provisional
Probab=94.94 E-value=0.28 Score=50.48 Aligned_cols=54 Identities=24% Similarity=0.253 Sum_probs=38.4
Q ss_pred chHHHHHHHHHHhccCCccEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCC
Q 047163 159 SKMEVFQDVMEALKDDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQN 217 (658)
Q Consensus 159 gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~ 217 (658)
|--...+.++ .+--+++.|.|.+|+|||||++.++.....+ .++..++-|-+.+
T Consensus 201 G~~s~~~~l~----~~~~~~~~i~G~pG~GKstl~~~i~~~a~~~-G~~v~~~hC~~dP 254 (367)
T PRK06851 201 GAVDFVPSLT----EGVKNRYFLKGRPGTGKSTMLKKIAKAAEER-GFDVEVYHCGFDP 254 (367)
T ss_pred cHHhhHHhHh----cccceEEEEeCCCCCcHHHHHHHHHHHHHhC-CCeEEEEeCCCCC
Confidence 3344444444 3445789999999999999999999998653 4666666565444
No 324
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=94.94 E-value=0.061 Score=55.46 Aligned_cols=53 Identities=21% Similarity=0.275 Sum_probs=44.4
Q ss_pred cccccccccchHHHHHHHHHHhccCCcc-EEEEEcCCCChHHHHHHHHHHHhhh
Q 047163 150 QVKDFEAFDSKMEVFQDVMEALKDDKLN-IIGVYGMGGVGKTTLVKQVAKQVME 202 (658)
Q Consensus 150 ~~~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~ 202 (658)
.|.....++|.+...+.+...+..+... .+.|+|+.|+||||+|..+.+..-.
T Consensus 18 ~P~~~~~l~Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc 71 (351)
T PRK09112 18 SPSENTRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILS 71 (351)
T ss_pred CCCchhhccCcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcC
Confidence 3456677899999999999998766654 5889999999999999999988643
No 325
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=94.93 E-value=0.023 Score=52.80 Aligned_cols=25 Identities=32% Similarity=0.472 Sum_probs=22.2
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHhh
Q 047163 177 NIIGVYGMGGVGKTTLVKQVAKQVM 201 (658)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (658)
.+++|+|++|+||||+++.+.....
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3789999999999999999988754
No 326
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=94.93 E-value=0.015 Score=55.57 Aligned_cols=178 Identities=17% Similarity=0.141 Sum_probs=107.0
Q ss_pred CceEEeccCCCCCc-----CCCcc-CCCCCceEEEecC--CCCCCccchH------HhcCCCCCcEEEccCCCCC-CCcc
Q 047163 478 GPIAISLPHRDIQE-----LPERL-QCPNLQLFLFFGK--GYGPMQISDL------FFEGTKELKDLSLTRIPFS-SLPS 542 (658)
Q Consensus 478 ~~~~l~l~~~~~~~-----~~~~~-~~~~L~~L~l~~~--~~~~~~~~~~------~~~~~~~L~~L~l~~~~~~-~lp~ 542 (658)
.+..+.+++|.+.. +...+ .-.+|+..++++- +.....+++. .+-++++|+..+||.|.+. ..|+
T Consensus 31 ~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e 110 (388)
T COG5238 31 ELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFPE 110 (388)
T ss_pred ceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccch
Confidence 56777788887642 21111 4566777776652 1112223322 2467889999999999876 3443
Q ss_pred ----ccccCCCcceEEccCCCCCCc--h-------------hhhccCCCcEEEccCccCCccchhh-----cCCCCCcEE
Q 047163 543 ----SLGSLINLGTLCLEDCPRNDI--A-------------ILRQLKKLEILRLRHSYTERLPLEI-----GQLTRLRLL 598 (658)
Q Consensus 543 ----~i~~l~~L~~L~L~~~~~~~l--~-------------~~~~l~~L~~L~l~~~~~~~lp~~~-----~~l~~L~~L 598 (658)
.|+.-+.|..|.|++|.+..+ . ....-+.|+......|.+...|... ..=.+|+.+
T Consensus 111 ~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~v 190 (388)
T COG5238 111 ELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLKEV 190 (388)
T ss_pred HHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCceeE
Confidence 455677899999999876543 1 2233477888888888777666322 122478888
Q ss_pred cccCcccccc-----cChhhhcCCCCCcEEEcccCCCCcccccCCCccchhhcCCCCccccCCC
Q 047163 599 DLSNCWRLKV-----IAPNVISKLSRLEELYMGNSFPKWDKVEGGSNASLAELKGLSKLDTGHN 657 (658)
Q Consensus 599 ~l~~~~~l~~-----~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~N 657 (658)
.+..| .+.. +....+..+.+|+.|++..|..+.. -+..+...+...+.|+.|++.+|
T Consensus 191 ki~qN-gIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~-gS~~La~al~~W~~lrEL~lnDC 252 (388)
T COG5238 191 KIQQN-GIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLE-GSRYLADALCEWNLLRELRLNDC 252 (388)
T ss_pred Eeeec-CcCcchhHHHHHHHHHHhCcceeeeccccchhhh-hHHHHHHHhcccchhhhccccch
Confidence 88777 3321 1112245678999999988652211 11123344555666777777665
No 327
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=94.91 E-value=0.11 Score=48.58 Aligned_cols=45 Identities=16% Similarity=0.142 Sum_probs=31.5
Q ss_pred EEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCCCCHHHHHHH
Q 047163 178 IIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQNPDHHKIQDK 226 (658)
Q Consensus 178 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~ 226 (658)
++.|.|.+|+|||++|.++....... =..++|++..+. ..++.+.
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~~--g~~v~~~s~e~~--~~~~~~~ 45 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLAR--GEPGLYVTLEES--PEELIEN 45 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHC--CCcEEEEECCCC--HHHHHHH
Confidence 36799999999999999988776432 245778876544 4444433
No 328
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=94.91 E-value=0.029 Score=51.17 Aligned_cols=28 Identities=25% Similarity=0.482 Sum_probs=25.0
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHhhh
Q 047163 175 KLNIIGVYGMGGVGKTTLVKQVAKQVME 202 (658)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 202 (658)
..++++|+|..|+|||||++.+......
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~~ 32 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALCA 32 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHhh
Confidence 4569999999999999999999988764
No 329
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=94.91 E-value=0.049 Score=50.50 Aligned_cols=48 Identities=27% Similarity=0.299 Sum_probs=34.4
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCCCCHHHHHHHHH
Q 047163 176 LNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQNPDHHKIQDKLA 228 (658)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~ 228 (658)
..+|+|-||=|+||||||+.+.++.... .+.-.+.+++-+....+++-
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~~~-----~~~E~vednp~L~~FY~d~~ 51 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLGFK-----VFYELVEDNPFLDLFYEDPE 51 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhCCc-----eeeecccCChHHHHHHHhHH
Confidence 4689999999999999999999988643 23334555555555555543
No 330
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.91 E-value=0.083 Score=55.33 Aligned_cols=82 Identities=21% Similarity=0.242 Sum_probs=53.0
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHh-
Q 047163 175 KLNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQNPDHHKIQDKLAFGLGMEFGFNENMFQRASRLCERLK- 253 (658)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~- 253 (658)
....+.+.|++|+|||+||..++.... |.-+--++. +++ + ..++......+.+.+.
T Consensus 537 ~lvSvLl~Gp~~sGKTaLAA~iA~~S~----FPFvKiiSp------e~m-------i------G~sEsaKc~~i~k~F~D 593 (744)
T KOG0741|consen 537 PLVSVLLEGPPGSGKTALAAKIALSSD----FPFVKIISP------EDM-------I------GLSESAKCAHIKKIFED 593 (744)
T ss_pred cceEEEEecCCCCChHHHHHHHHhhcC----CCeEEEeCh------HHc-------c------CccHHHHHHHHHHHHHH
Confidence 455678999999999999999987653 654322221 110 0 2233334445555544
Q ss_pred --cCCeEEEEEecCCcccCcccccCccc
Q 047163 254 --KEKRLLIILDNIWIELEFDKIGIPSG 279 (658)
Q Consensus 254 --~~k~~LlVlDdv~~~~~~~~l~~~~~ 279 (658)
+..--.||+||+....+|..+++.|.
T Consensus 594 AYkS~lsiivvDdiErLiD~vpIGPRfS 621 (744)
T KOG0741|consen 594 AYKSPLSIIVVDDIERLLDYVPIGPRFS 621 (744)
T ss_pred hhcCcceEEEEcchhhhhcccccCchhh
Confidence 12445899999999999998877663
No 331
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=94.90 E-value=0.016 Score=57.61 Aligned_cols=86 Identities=17% Similarity=0.327 Sum_probs=46.9
Q ss_pred HHHHHhccCCccEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCCCCCHHHHH
Q 047163 166 DVMEALKDDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQNPDHHKIQDKLAFGLGMEFGFNENMFQRA 245 (658)
Q Consensus 166 ~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~ 245 (658)
.+++.+...+ +-+.++|+.|+|||++++......... .| ...-++.+...+...+++-|-..+.....
T Consensus 24 ~ll~~l~~~~-~pvLl~G~~GtGKT~li~~~l~~l~~~-~~-~~~~~~~s~~Tts~~~q~~ie~~l~k~~~--------- 91 (272)
T PF12775_consen 24 YLLDLLLSNG-RPVLLVGPSGTGKTSLIQNFLSSLDSD-KY-LVITINFSAQTTSNQLQKIIESKLEKRRG--------- 91 (272)
T ss_dssp HHHHHHHHCT-EEEEEESSTTSSHHHHHHHHHHCSTTC-CE-EEEEEES-TTHHHHHHHHCCCTTECECTT---------
T ss_pred HHHHHHHHcC-CcEEEECCCCCchhHHHHhhhccCCcc-cc-ceeEeeccCCCCHHHHHHHHhhcEEcCCC---------
Confidence 4555554444 456999999999999999987654332 11 13344555444444443322111111100
Q ss_pred HHHHHHH--hcCCeEEEEEecCCc
Q 047163 246 SRLCERL--KKEKRLLIILDNIWI 267 (658)
Q Consensus 246 ~~l~~~l--~~~k~~LlVlDdv~~ 267 (658)
+.+ ..+|++++.+||+.-
T Consensus 92 ----~~~gP~~~k~lv~fiDDlN~ 111 (272)
T PF12775_consen 92 ----RVYGPPGGKKLVLFIDDLNM 111 (272)
T ss_dssp ----EEEEEESSSEEEEEEETTT-
T ss_pred ----CCCCCCCCcEEEEEecccCC
Confidence 000 136899999999863
No 332
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=94.89 E-value=0.079 Score=54.95 Aligned_cols=48 Identities=25% Similarity=0.249 Sum_probs=36.3
Q ss_pred ccccchHHHHHHHHHHhcc--------------CCccEEEEEcCCCChHHHHHHHHHHHhhh
Q 047163 155 EAFDSKMEVFQDVMEALKD--------------DKLNIIGVYGMGGVGKTTLVKQVAKQVME 202 (658)
Q Consensus 155 ~~~~gr~~~~~~l~~~l~~--------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 202 (658)
..++|.++.++.+.-.+.. -..+-|.++|++|+|||++|+.+......
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~ 73 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANA 73 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4577888877777544431 12367899999999999999999988753
No 333
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=94.87 E-value=0.06 Score=50.62 Aligned_cols=42 Identities=26% Similarity=0.513 Sum_probs=29.5
Q ss_pred EEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCCCCH
Q 047163 178 IIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQNPDH 220 (658)
Q Consensus 178 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~ 220 (658)
.|+|+|-||+||||+|..+......+..| .+.-|+...++++
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~~~~~-~VLvVDaDpd~nL 43 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLSKGGY-NVLVVDADPDSNL 43 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHhcCCc-eEEEEeCCCCCCh
Confidence 68999999999999999977666554323 3445565555443
No 334
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=94.86 E-value=0.022 Score=47.77 Aligned_cols=24 Identities=46% Similarity=0.834 Sum_probs=21.1
Q ss_pred EEEEcCCCChHHHHHHHHHHHhhh
Q 047163 179 IGVYGMGGVGKTTLVKQVAKQVME 202 (658)
Q Consensus 179 i~I~G~gGiGKTtLa~~v~~~~~~ 202 (658)
|-|+|.+|+|||++|+.++.+...
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~ 24 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLK 24 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHH
Confidence 468999999999999999888754
No 335
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=94.86 E-value=0.02 Score=53.36 Aligned_cols=24 Identities=25% Similarity=0.333 Sum_probs=21.5
Q ss_pred EEEEEcCCCChHHHHHHHHHHHhh
Q 047163 178 IIGVYGMGGVGKTTLVKQVAKQVM 201 (658)
Q Consensus 178 vi~I~G~gGiGKTtLa~~v~~~~~ 201 (658)
||.|+|++|+||||+|+.+.....
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~~ 24 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENFG 24 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcC
Confidence 588999999999999999988663
No 336
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=94.85 E-value=0.035 Score=54.92 Aligned_cols=26 Identities=35% Similarity=0.404 Sum_probs=21.0
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHhhh
Q 047163 177 NIIGVYGMGGVGKTTLVKQVAKQVME 202 (658)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~~ 202 (658)
+.|.|.|.+|+||||+|+.+......
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~ 27 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEE 27 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHh
Confidence 46899999999999999999998765
No 337
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=94.84 E-value=0.1 Score=57.00 Aligned_cols=75 Identities=16% Similarity=0.271 Sum_probs=44.6
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhcC
Q 047163 176 LNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQNPDHHKIQDKLAFGLGMEFGFNENMFQRASRLCERLKKE 255 (658)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 255 (658)
...+.|+|..|+|||.|++.+++.......-..+++++. .++..++...+... ....+.+.++
T Consensus 314 ~NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yita------eef~~el~~al~~~---------~~~~f~~~y~-- 376 (617)
T PRK14086 314 YNPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSS------EEFTNEFINSIRDG---------KGDSFRRRYR-- 376 (617)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeH------HHHHHHHHHHHHhc---------cHHHHHHHhh--
Confidence 346899999999999999999998764211124556553 33333443332111 1123334443
Q ss_pred CeEEEEEecCCc
Q 047163 256 KRLLIILDNIWI 267 (658)
Q Consensus 256 k~~LlVlDdv~~ 267 (658)
+-=+|||||+..
T Consensus 377 ~~DLLlIDDIq~ 388 (617)
T PRK14086 377 EMDILLVDDIQF 388 (617)
T ss_pred cCCEEEEehhcc
Confidence 235788899864
No 338
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=94.81 E-value=0.068 Score=52.08 Aligned_cols=99 Identities=21% Similarity=0.196 Sum_probs=56.7
Q ss_pred cccchHHHHHHHHHHhc-------cCCccEEEEEcCCCChHHHHHHHHHHHhhhcc-CCCEE-EEEEEcCCCCHHHHHHH
Q 047163 156 AFDSKMEVFQDVMEALK-------DDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDK-LFDKV-VMAEVTQNPDHHKIQDK 226 (658)
Q Consensus 156 ~~~gr~~~~~~l~~~l~-------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~F~~~-~wv~v~~~~~~~~~~~~ 226 (658)
.++|..-..+.++..+. ..++-+++.+|+.|.||.-.++.+++...... +-+.+ .++..-+-+....+
T Consensus 83 ~lfGQHla~~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~hFP~~~~i--- 159 (344)
T KOG2170|consen 83 ALFGQHLAKQLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATLHFPHASKI--- 159 (344)
T ss_pred HhhchHHHHHHHHHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhhhccCCChHHH---
Confidence 34565555555555554 23456899999999999999999998764321 00000 01111111111111
Q ss_pred HHHhcCCCCCCCCCHHHHHHHHHHHHhcCCeEEEEEecCCcc
Q 047163 227 LAFGLGMEFGFNENMFQRASRLCERLKKEKRLLIILDNIWIE 268 (658)
Q Consensus 227 i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~ 268 (658)
+.-.++....+.......+|-|+|||+|+..
T Consensus 160 -----------e~Yk~eL~~~v~~~v~~C~rslFIFDE~DKm 190 (344)
T KOG2170|consen 160 -----------EDYKEELKNRVRGTVQACQRSLFIFDEVDKL 190 (344)
T ss_pred -----------HHHHHHHHHHHHHHHHhcCCceEEechhhhc
Confidence 1112344455556665678999999999865
No 339
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=94.78 E-value=0.056 Score=46.86 Aligned_cols=26 Identities=31% Similarity=0.351 Sum_probs=23.5
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHhhh
Q 047163 177 NIIGVYGMGGVGKTTLVKQVAKQVME 202 (658)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~~ 202 (658)
.+|.+.|.-|+||||+++.+......
T Consensus 23 ~~i~l~G~lGaGKTtl~~~l~~~lg~ 48 (133)
T TIGR00150 23 TVVLLKGDLGAGKTTLVQGLLQGLGI 48 (133)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 48999999999999999999988653
No 340
>PRK06217 hypothetical protein; Validated
Probab=94.78 E-value=0.024 Score=52.83 Aligned_cols=33 Identities=27% Similarity=0.313 Sum_probs=26.1
Q ss_pred EEEEEcCCCChHHHHHHHHHHHhhhccCC--CEEEE
Q 047163 178 IIGVYGMGGVGKTTLVKQVAKQVMEDKLF--DKVVM 211 (658)
Q Consensus 178 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F--~~~~w 211 (658)
.|.|.|.+|+||||+|+.+...... .+| |..+|
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~-~~~~~D~~~~ 37 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDI-PHLDTDDYFW 37 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCC-cEEEcCceee
Confidence 5899999999999999999988753 233 45556
No 341
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=94.76 E-value=0.24 Score=47.28 Aligned_cols=92 Identities=22% Similarity=0.253 Sum_probs=57.2
Q ss_pred cccccchHHHHHHHHHHhc-------------cCCccEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCCCCH
Q 047163 154 FEAFDSKMEVFQDVMEALK-------------DDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQNPDH 220 (658)
Q Consensus 154 ~~~~~gr~~~~~~l~~~l~-------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~ 220 (658)
..++-|=.+.++++-+... -+..+=|.++|++|.|||-+|+.|+|+.... | +.|-. -
T Consensus 176 y~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdac--f-----irvig---s 245 (435)
T KOG0729|consen 176 YSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDAC--F-----IRVIG---S 245 (435)
T ss_pred cccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCce--E-----Eeehh---H
Confidence 3345566677777665443 1345568899999999999999999887532 2 22211 1
Q ss_pred HHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhcCCeEEEEEecCC
Q 047163 221 HKIQDKLAFGLGMEFGFNENMFQRASRLCERLKKEKRLLIILDNIW 266 (658)
Q Consensus 221 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~ 266 (658)
+-+++-+ .+-.....++++.-+..|-|+|.||.++
T Consensus 246 elvqkyv-----------gegarmvrelf~martkkaciiffdeid 280 (435)
T KOG0729|consen 246 ELVQKYV-----------GEGARMVRELFEMARTKKACIIFFDEID 280 (435)
T ss_pred HHHHHHh-----------hhhHHHHHHHHHHhcccceEEEEeeccc
Confidence 1111111 1112345566776676788999999986
No 342
>PRK13949 shikimate kinase; Provisional
Probab=94.75 E-value=0.028 Score=51.54 Aligned_cols=24 Identities=42% Similarity=0.447 Sum_probs=22.1
Q ss_pred EEEEEcCCCChHHHHHHHHHHHhh
Q 047163 178 IIGVYGMGGVGKTTLVKQVAKQVM 201 (658)
Q Consensus 178 vi~I~G~gGiGKTtLa~~v~~~~~ 201 (658)
-|.|+|++|+||||+++.++....
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~ 26 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELG 26 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 589999999999999999998875
No 343
>PRK00889 adenylylsulfate kinase; Provisional
Probab=94.75 E-value=0.032 Score=51.57 Aligned_cols=27 Identities=30% Similarity=0.463 Sum_probs=24.2
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHHhhh
Q 047163 176 LNIIGVYGMGGVGKTTLVKQVAKQVME 202 (658)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~ 202 (658)
..+|.|+|++|+||||+|+.+......
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~~l~~ 30 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAEKLRE 30 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 458999999999999999999998754
No 344
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=94.74 E-value=0.027 Score=52.02 Aligned_cols=24 Identities=21% Similarity=0.396 Sum_probs=22.1
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHh
Q 047163 177 NIIGVYGMGGVGKTTLVKQVAKQV 200 (658)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~ 200 (658)
++|.+.|++|+||||+|+.+....
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~ 26 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVL 26 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 589999999999999999998775
No 345
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=94.74 E-value=0.25 Score=52.26 Aligned_cols=91 Identities=21% Similarity=0.341 Sum_probs=57.8
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCCC-CHHHHHHHHHHhcCCCC------CCCCCHH------H
Q 047163 177 NIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQNP-DHHKIQDKLAFGLGMEF------GFNENMF------Q 243 (658)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~-~~~~~~~~i~~~l~~~~------~~~~~~~------~ 243 (658)
..++|.|..|+|||||+.++......+. -+.++++-+++.. ....+.+++...-.... ....+.. .
T Consensus 145 QR~gIfa~~GvGKt~Ll~~i~~~~~~~~-~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~a~~ 223 (463)
T PRK09280 145 GKIGLFGGAGVGKTVLIQELINNIAKEH-GGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLRVAL 223 (463)
T ss_pred CEEEeecCCCCChhHHHHHHHHHHHhcC-CCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHHH
Confidence 4799999999999999999887775432 2467788887765 44556666654322110 0011111 1
Q ss_pred HHHHHHHHHh--cCCeEEEEEecCCcc
Q 047163 244 RASRLCERLK--KEKRLLIILDNIWIE 268 (658)
Q Consensus 244 ~~~~l~~~l~--~~k~~LlVlDdv~~~ 268 (658)
.+-.+-++++ .++.+|+++|++..-
T Consensus 224 ~a~tiAEyfrd~~G~~VLll~DslTR~ 250 (463)
T PRK09280 224 TGLTMAEYFRDVEGQDVLLFIDNIFRF 250 (463)
T ss_pred HHHHHHHHHHHhcCCceEEEecchHHH
Confidence 1223555553 479999999999754
No 346
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=94.73 E-value=0.16 Score=50.24 Aligned_cols=40 Identities=23% Similarity=0.357 Sum_probs=30.6
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCC
Q 047163 176 LNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQN 217 (658)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~ 217 (658)
-.++.|.|.+|+|||++|.++......+ =..+++++..+.
T Consensus 36 gs~~lI~G~pGtGKT~l~~qf~~~~a~~--Ge~vlyis~Ee~ 75 (259)
T TIGR03878 36 YSVINITGVSDTGKSLMVEQFAVTQASR--GNPVLFVTVESP 75 (259)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhC--CCcEEEEEecCC
Confidence 3589999999999999999987665432 246778887643
No 347
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=94.73 E-value=0.099 Score=51.81 Aligned_cols=56 Identities=23% Similarity=0.275 Sum_probs=36.2
Q ss_pred HHHHHHHHHHhccCCccEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCCCCHHHH
Q 047163 161 MEVFQDVMEALKDDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQNPDHHKI 223 (658)
Q Consensus 161 ~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~ 223 (658)
...++.+..++..+. .|.|.|.+|+|||++|+.++.... ...+.++++...+..++
T Consensus 8 ~~l~~~~l~~l~~g~--~vLL~G~~GtGKT~lA~~la~~lg-----~~~~~i~~~~~~~~~dl 63 (262)
T TIGR02640 8 KRVTSRALRYLKSGY--PVHLRGPAGTGKTTLAMHVARKRD-----RPVMLINGDAELTTSDL 63 (262)
T ss_pred HHHHHHHHHHHhcCC--eEEEEcCCCCCHHHHHHHHHHHhC-----CCEEEEeCCccCCHHHH
Confidence 344555666654433 567999999999999999987432 12345566555544444
No 348
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=94.72 E-value=0.052 Score=56.26 Aligned_cols=52 Identities=19% Similarity=0.318 Sum_probs=43.8
Q ss_pred cccccccccchHHHHHHHHHHhccCCcc-EEEEEcCCCChHHHHHHHHHHHhh
Q 047163 150 QVKDFEAFDSKMEVFQDVMEALKDDKLN-IIGVYGMGGVGKTTLVKQVAKQVM 201 (658)
Q Consensus 150 ~~~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~ 201 (658)
.|.....++|.+...+.|.+.+..+.+. .+.++|+.|+||||+|..+.+..-
T Consensus 14 ~P~~~~~iiGq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Ll 66 (365)
T PRK07471 14 HPRETTALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLL 66 (365)
T ss_pred CCCchhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHh
Confidence 3455677899999999999998877765 488999999999999999988764
No 349
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=94.72 E-value=0.025 Score=50.49 Aligned_cols=24 Identities=42% Similarity=0.606 Sum_probs=21.7
Q ss_pred EEEEEcCCCChHHHHHHHHHHHhh
Q 047163 178 IIGVYGMGGVGKTTLVKQVAKQVM 201 (658)
Q Consensus 178 vi~I~G~gGiGKTtLa~~v~~~~~ 201 (658)
+|.|.|..|+||||+|+.+.....
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~~ 24 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKLG 24 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999998764
No 350
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=94.72 E-value=0.041 Score=56.26 Aligned_cols=49 Identities=20% Similarity=0.297 Sum_probs=42.0
Q ss_pred ccccccchHHHHHHHHHHhccCCccEEEEEcCCCChHHHHHHHHHHHhh
Q 047163 153 DFEAFDSKMEVFQDVMEALKDDKLNIIGVYGMGGVGKTTLVKQVAKQVM 201 (658)
Q Consensus 153 ~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (658)
+...++|.++.+..|+..+.+..+.-|.|.|..|+||||+|+.+++-..
T Consensus 15 pf~~ivGq~~~k~al~~~~~~p~~~~vli~G~~GtGKs~~ar~~~~~l~ 63 (350)
T CHL00081 15 PFTAIVGQEEMKLALILNVIDPKIGGVMIMGDRGTGKSTTIRALVDLLP 63 (350)
T ss_pred CHHHHhChHHHHHHHHHhccCCCCCeEEEEcCCCCCHHHHHHHHHHHHh
Confidence 4567899999998888877777777788999999999999999987754
No 351
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=94.69 E-value=0.15 Score=53.40 Aligned_cols=89 Identities=16% Similarity=0.264 Sum_probs=54.0
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCCCCH-HHHHHHHHHhcCCCCC------CCCCHHH-----
Q 047163 176 LNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQNPDH-HKIQDKLAFGLGMEFG------FNENMFQ----- 243 (658)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~-~~~~~~i~~~l~~~~~------~~~~~~~----- 243 (658)
-..++|+|..|+|||||++.+..... .+.++.+-+++.... .++.+.++..-+.... .+.+...
T Consensus 162 GqrigI~G~sG~GKSTLL~~I~~~~~----~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a~ 237 (444)
T PRK08972 162 GQRMGLFAGSGVGKSVLLGMMTRGTT----ADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKGC 237 (444)
T ss_pred CCEEEEECCCCCChhHHHHHhccCCC----CCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHHH
Confidence 35899999999999999999986432 356666777776543 4455555433221110 0111111
Q ss_pred -HHHHHHHHHh-cCCeEEEEEecCCcc
Q 047163 244 -RASRLCERLK-KEKRLLIILDNIWIE 268 (658)
Q Consensus 244 -~~~~l~~~l~-~~k~~LlVlDdv~~~ 268 (658)
.+-.+-++++ .++++|+++||+...
T Consensus 238 ~~A~tiAEyfrd~G~~VLl~~DslTR~ 264 (444)
T PRK08972 238 ETATTIAEYFRDQGLNVLLLMDSLTRY 264 (444)
T ss_pred HHHHHHHHHHHHcCCCEEEEEcChHHH
Confidence 1222444442 479999999999654
No 352
>PTZ00088 adenylate kinase 1; Provisional
Probab=94.68 E-value=0.053 Score=52.27 Aligned_cols=24 Identities=33% Similarity=0.499 Sum_probs=21.7
Q ss_pred EEEEEcCCCChHHHHHHHHHHHhh
Q 047163 178 IIGVYGMGGVGKTTLVKQVAKQVM 201 (658)
Q Consensus 178 vi~I~G~gGiGKTtLa~~v~~~~~ 201 (658)
.|.|.|++|+||||+|+.+.....
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~~g 31 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKKEN 31 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 489999999999999999988764
No 353
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=94.68 E-value=0.025 Score=52.41 Aligned_cols=24 Identities=38% Similarity=0.722 Sum_probs=22.1
Q ss_pred EEEEEcCCCChHHHHHHHHHHHhh
Q 047163 178 IIGVYGMGGVGKTTLVKQVAKQVM 201 (658)
Q Consensus 178 vi~I~G~gGiGKTtLa~~v~~~~~ 201 (658)
+|+|.|.+|+||||||+.+.....
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~ 24 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLR 24 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999998875
No 354
>PRK12678 transcription termination factor Rho; Provisional
Probab=94.66 E-value=0.17 Score=54.36 Aligned_cols=92 Identities=17% Similarity=0.175 Sum_probs=51.1
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHHhhhccCCCEE-EEEEEcCCCCHH-HHHHHHHHhc-CCCCCCCCC----HHHHHHHH
Q 047163 176 LNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKV-VMAEVTQNPDHH-KIQDKLAFGL-GMEFGFNEN----MFQRASRL 248 (658)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~-~wv~v~~~~~~~-~~~~~i~~~l-~~~~~~~~~----~~~~~~~l 248 (658)
-...+|+|.+|+|||||++.+.+.... .+-++. +.+-|.+.+... .+.+.+-..+ ....+.+.. .....-.+
T Consensus 416 GQR~LIvgpp~aGKTtLL~~IAn~i~~-n~~~~~~ivvLIgERpeEVtdm~rsVkgeVVasT~D~p~~~~~~~a~~ai~~ 494 (672)
T PRK12678 416 GQRGLIVSPPKAGKTTILQNIANAITT-NNPECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPSDHTTVAELAIER 494 (672)
T ss_pred CCEeEEeCCCCCCHHHHHHHHHHHHhh-cCCCeEEEEEEEeCchhhHHHHHHhccceEEEECCCCCHHHHHHHHHHHHHH
Confidence 347899999999999999999987754 233433 355566655333 2333220000 011110110 01112223
Q ss_pred HHHH-hcCCeEEEEEecCCcc
Q 047163 249 CERL-KKEKRLLIILDNIWIE 268 (658)
Q Consensus 249 ~~~l-~~~k~~LlVlDdv~~~ 268 (658)
-+++ ..++.+||++|++...
T Consensus 495 Ae~fre~G~dVlillDSlTR~ 515 (672)
T PRK12678 495 AKRLVELGKDVVVLLDSITRL 515 (672)
T ss_pred HHHHHHcCCCEEEEEeCchHH
Confidence 3444 3589999999998643
No 355
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=94.64 E-value=0.002 Score=65.02 Aligned_cols=156 Identities=20% Similarity=0.212 Sum_probs=80.2
Q ss_pred CCCCCceEEEecCCCCCCccchHHhcCCCCCcEEEccCCC-CCC--CccccccCCCcceEEccCCC-CCC--c-hhhhcc
Q 047163 497 QCPNLQLFLFFGKGYGPMQISDLFFEGTKELKDLSLTRIP-FSS--LPSSLGSLINLGTLCLEDCP-RND--I-AILRQL 569 (658)
Q Consensus 497 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~--lp~~i~~l~~L~~L~L~~~~-~~~--l-~~~~~l 569 (658)
.+|+++.|.+.++.+........+-..+..|++|++..|. ++. +-.-...+++|.||++++|. ++. + .-....
T Consensus 162 ~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~ 241 (483)
T KOG4341|consen 162 NCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGC 241 (483)
T ss_pred hCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccc
Confidence 5677777766666533333333444566777777777743 331 22233456777777777774 222 1 222222
Q ss_pred CCCcEEEccCcc---------------------------CCccc-hhh-cCCCCCcEEcccCcccccccChhhhc-CCCC
Q 047163 570 KKLEILRLRHSY---------------------------TERLP-LEI-GQLTRLRLLDLSNCWRLKVIAPNVIS-KLSR 619 (658)
Q Consensus 570 ~~L~~L~l~~~~---------------------------~~~lp-~~~-~~l~~L~~L~l~~~~~l~~~~~~~i~-~l~~ 619 (658)
.+|+.+.++||. ++... ..+ ..+..|+.|..++|..+...+-..++ +.++
T Consensus 242 ~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~ 321 (483)
T KOG4341|consen 242 KELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHN 321 (483)
T ss_pred hhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCc
Confidence 334444333331 11110 011 23456777777777555554444344 4567
Q ss_pred CcEEEcccCCCCcccccCCCccch-hhcCCCCccccCC
Q 047163 620 LEELYMGNSFPKWDKVEGGSNASL-AELKGLSKLDTGH 656 (658)
Q Consensus 620 L~~L~l~~~~~~~~~~~~~~~~~l-~~l~~L~~L~l~~ 656 (658)
|+.|-+++|. +++......+ .++..|+.+++.+
T Consensus 322 L~~l~l~~c~----~fsd~~ft~l~rn~~~Le~l~~e~ 355 (483)
T KOG4341|consen 322 LQVLELSGCQ----QFSDRGFTMLGRNCPHLERLDLEE 355 (483)
T ss_pred eEEEeccccc----hhhhhhhhhhhcCChhhhhhcccc
Confidence 8888888775 2443333333 2456666666543
No 356
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=94.63 E-value=0.1 Score=54.93 Aligned_cols=91 Identities=18% Similarity=0.303 Sum_probs=58.5
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCCCC-HHHHHHHHHHhcCCCC------CCCCCHH------H
Q 047163 177 NIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQNPD-HHKIQDKLAFGLGMEF------GFNENMF------Q 243 (658)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~-~~~~~~~i~~~l~~~~------~~~~~~~------~ 243 (658)
..++|.|.+|+|||+|+.++...... .+-+.++++-+++... ...+.+.+...-.... ....+.. .
T Consensus 139 Qr~~Ifg~~G~GKt~l~~~~~~~~~~-~~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~~~~~ 217 (449)
T TIGR03305 139 GKAGLFGGAGVGKTVLLTEMIHNMVG-QHQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFRVGH 217 (449)
T ss_pred CEEEeecCCCCChhHHHHHHHHHHHh-cCCCEEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHHHHHH
Confidence 47999999999999999999887642 3347888888887753 4455555543211110 0011111 1
Q ss_pred HHHHHHHHHh--cCCeEEEEEecCCcc
Q 047163 244 RASRLCERLK--KEKRLLIILDNIWIE 268 (658)
Q Consensus 244 ~~~~l~~~l~--~~k~~LlVlDdv~~~ 268 (658)
.+-.+-++++ +++++|+++||+...
T Consensus 218 ~a~tiAEyfrd~~G~~VLl~~DslTR~ 244 (449)
T TIGR03305 218 TALTMAEYFRDDEKQDVLLLIDNIFRF 244 (449)
T ss_pred HHHHHHHHHHHhcCCceEEEecChHHH
Confidence 2334556665 379999999999754
No 357
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=94.63 E-value=0.11 Score=58.01 Aligned_cols=106 Identities=22% Similarity=0.334 Sum_probs=65.9
Q ss_pred cccccchHHHHHHHHHHhc---------cCCccEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCCCCHHHHH
Q 047163 154 FEAFDSKMEVFQDVMEALK---------DDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQNPDHHKIQ 224 (658)
Q Consensus 154 ~~~~~gr~~~~~~l~~~l~---------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~ 224 (658)
...++|.+..+..+.+.+. +....+...+|+.|||||-||+.++...-..+ +..+-++.|+-....
T Consensus 490 ~~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e--~aliR~DMSEy~EkH--- 564 (786)
T COG0542 490 KKRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDE--QALIRIDMSEYMEKH--- 564 (786)
T ss_pred hcceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCC--ccceeechHHHHHHH---
Confidence 4567899999999988876 12345677899999999999999998772210 344555555432222
Q ss_pred HHHHHhcCCCCCCCCCHHHHHHHHHHHHhcCCeE-EEEEecCCcc
Q 047163 225 DKLAFGLGMEFGFNENMFQRASRLCERLKKEKRL-LIILDNIWIE 268 (658)
Q Consensus 225 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~-LlVlDdv~~~ 268 (658)
.+.+-+|.++. ...-+ ....+-+..+. +.| +|.||++...
T Consensus 565 -sVSrLIGaPPG-YVGye-eGG~LTEaVRr-~PySViLlDEIEKA 605 (786)
T COG0542 565 -SVSRLIGAPPG-YVGYE-EGGQLTEAVRR-KPYSVILLDEIEKA 605 (786)
T ss_pred -HHHHHhCCCCC-Cceec-cccchhHhhhc-CCCeEEEechhhhc
Confidence 22333444433 11111 13455666663 655 8889998743
No 358
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=94.62 E-value=0.025 Score=50.73 Aligned_cols=23 Identities=43% Similarity=0.668 Sum_probs=20.5
Q ss_pred EEEEEcCCCChHHHHHHHHHHHh
Q 047163 178 IIGVYGMGGVGKTTLVKQVAKQV 200 (658)
Q Consensus 178 vi~I~G~gGiGKTtLa~~v~~~~ 200 (658)
++.|.|++|+||||+|+.+....
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc
Confidence 47899999999999999998764
No 359
>PRK08149 ATP synthase SpaL; Validated
Probab=94.61 E-value=0.11 Score=54.64 Aligned_cols=89 Identities=17% Similarity=0.246 Sum_probs=52.5
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCCC-CHHHHHHHHHHhcCCCC-----C-CCCCH------H
Q 047163 176 LNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQNP-DHHKIQDKLAFGLGMEF-----G-FNENM------F 242 (658)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~-~~~~~~~~i~~~l~~~~-----~-~~~~~------~ 242 (658)
-..++|+|..|+|||||++.++.... -+.++...+.... +...+.++......... . .+.+. .
T Consensus 151 Gq~i~I~G~sG~GKTTLl~~i~~~~~----~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~a~ 226 (428)
T PRK08149 151 GQRMGIFASAGCGKTSLMNMLIEHSE----ADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCNAA 226 (428)
T ss_pred CCEEEEECCCCCChhHHHHHHhcCCC----CCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHhHH
Confidence 34899999999999999999986543 3344445555443 44455555554322110 0 01111 1
Q ss_pred HHHHHHHHHHh-cCCeEEEEEecCCcc
Q 047163 243 QRASRLCERLK-KEKRLLIILDNIWIE 268 (658)
Q Consensus 243 ~~~~~l~~~l~-~~k~~LlVlDdv~~~ 268 (658)
..+..+-++++ .+|.+|+++||+...
T Consensus 227 ~~a~tiAE~fr~~G~~Vll~~DslTr~ 253 (428)
T PRK08149 227 LVATTVAEYFRDQGKRVVLFIDSMTRY 253 (428)
T ss_pred HHHHHHHHHHHHcCCCEEEEccchHHH
Confidence 12223444442 489999999999754
No 360
>PRK05439 pantothenate kinase; Provisional
Probab=94.60 E-value=0.28 Score=49.40 Aligned_cols=28 Identities=29% Similarity=0.340 Sum_probs=24.3
Q ss_pred CCccEEEEEcCCCChHHHHHHHHHHHhh
Q 047163 174 DKLNIIGVYGMGGVGKTTLVKQVAKQVM 201 (658)
Q Consensus 174 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (658)
+..-+|+|.|.+|+||||+|+.+.....
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~~l~ 111 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQALLS 111 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4566999999999999999999988654
No 361
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=94.60 E-value=0.24 Score=52.24 Aligned_cols=90 Identities=17% Similarity=0.232 Sum_probs=54.3
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCCCCH-HHHHHHHHHhcCCCC------CCCCCHHH----
Q 047163 175 KLNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQNPDH-HKIQDKLAFGLGMEF------GFNENMFQ---- 243 (658)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~-~~~~~~i~~~l~~~~------~~~~~~~~---- 243 (658)
.-..++|+|..|+|||||++++++... .+.++.+-+++.... ....++.+..-+... ..+.+...
T Consensus 157 ~Gqri~I~G~sG~GKTtLL~~I~~~~~----~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~a 232 (442)
T PRK08927 157 RGQRMGIFAGSGVGKSVLLSMLARNAD----ADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQA 232 (442)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccC----CCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHHH
Confidence 345899999999999999999997664 345556777766533 344444443322110 00111111
Q ss_pred --HHHHHHHHHh-cCCeEEEEEecCCcc
Q 047163 244 --RASRLCERLK-KEKRLLIILDNIWIE 268 (658)
Q Consensus 244 --~~~~l~~~l~-~~k~~LlVlDdv~~~ 268 (658)
.+-.+-++++ .++.+|+++||+...
T Consensus 233 ~~~a~tiAEyfrd~G~~Vll~~DslTr~ 260 (442)
T PRK08927 233 AYLTLAIAEYFRDQGKDVLCLMDSVTRF 260 (442)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEeCcHHH
Confidence 1223444452 489999999999654
No 362
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=94.59 E-value=0.026 Score=52.44 Aligned_cols=24 Identities=42% Similarity=0.571 Sum_probs=21.6
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHh
Q 047163 177 NIIGVYGMGGVGKTTLVKQVAKQV 200 (658)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~ 200 (658)
++|+|+|+.|+||||||+.+....
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccC
Confidence 479999999999999999999754
No 363
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=94.57 E-value=0.045 Score=52.33 Aligned_cols=29 Identities=34% Similarity=0.533 Sum_probs=25.4
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHhhhc
Q 047163 175 KLNIIGVYGMGGVGKTTLVKQVAKQVMED 203 (658)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 203 (658)
...+|.++||+|+||||..+.++.....+
T Consensus 18 ~p~~ilVvGMAGSGKTTF~QrL~~hl~~~ 46 (366)
T KOG1532|consen 18 RPVIILVVGMAGSGKTTFMQRLNSHLHAK 46 (366)
T ss_pred CCcEEEEEecCCCCchhHHHHHHHHHhhc
Confidence 35578899999999999999999998765
No 364
>PRK13947 shikimate kinase; Provisional
Probab=94.56 E-value=0.03 Score=51.49 Aligned_cols=24 Identities=42% Similarity=0.482 Sum_probs=21.9
Q ss_pred EEEEEcCCCChHHHHHHHHHHHhh
Q 047163 178 IIGVYGMGGVGKTTLVKQVAKQVM 201 (658)
Q Consensus 178 vi~I~G~gGiGKTtLa~~v~~~~~ 201 (658)
-|.|+|++|+||||+|+.+.+...
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg 26 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLS 26 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhC
Confidence 489999999999999999998874
No 365
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=94.55 E-value=0.057 Score=58.49 Aligned_cols=59 Identities=25% Similarity=0.326 Sum_probs=43.1
Q ss_pred ccccccccchHHHHHHHHHHhcc-----CCccEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEE
Q 047163 151 VKDFEAFDSKMEVFQDVMEALKD-----DKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAE 213 (658)
Q Consensus 151 ~~~~~~~~gr~~~~~~l~~~l~~-----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~ 213 (658)
|....++.-..+.++++..||.+ ...+++.+.|++|+||||.++.+++... |+.+=|.+
T Consensus 15 P~~~~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~elg----~~v~Ew~n 78 (519)
T PF03215_consen 15 PKTLDELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKELG----FEVQEWIN 78 (519)
T ss_pred CCCHHHhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHhC----CeeEEecC
Confidence 44444555556667788888862 2356899999999999999999998864 55566754
No 366
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=94.54 E-value=0.29 Score=44.47 Aligned_cols=43 Identities=23% Similarity=0.368 Sum_probs=33.0
Q ss_pred chHHHHHHHHHHhccCCcc-EEEEEcCCCChHHHHHHHHHHHhh
Q 047163 159 SKMEVFQDVMEALKDDKLN-IIGVYGMGGVGKTTLVKQVAKQVM 201 (658)
Q Consensus 159 gr~~~~~~l~~~l~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~ 201 (658)
|.+...+.|.+.+..+.+. .+.++|..|+||+++|..+.+..-
T Consensus 1 gq~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll 44 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALL 44 (162)
T ss_dssp S-HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CcHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHc
Confidence 5566777777777766655 579999999999999999998753
No 367
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=94.53 E-value=0.094 Score=55.24 Aligned_cols=47 Identities=19% Similarity=0.143 Sum_probs=34.9
Q ss_pred ccccchHHHHHHHHHHhc-------cC---------CccEEEEEcCCCChHHHHHHHHHHHhh
Q 047163 155 EAFDSKMEVFQDVMEALK-------DD---------KLNIIGVYGMGGVGKTTLVKQVAKQVM 201 (658)
Q Consensus 155 ~~~~gr~~~~~~l~~~l~-------~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (658)
..++|.+..++.+...+. .. .-+.+.++|++|+|||++|+.++....
T Consensus 71 ~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~ 133 (412)
T PRK05342 71 QYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILD 133 (412)
T ss_pred hHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhC
Confidence 457899988887754431 10 125689999999999999999987653
No 368
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=94.52 E-value=0.053 Score=55.27 Aligned_cols=49 Identities=27% Similarity=0.315 Sum_probs=39.1
Q ss_pred cccccccchHHHHHHHHHHhccCCccEEEEEcCCCChHHHHHHHHHHHh
Q 047163 152 KDFEAFDSKMEVFQDVMEALKDDKLNIIGVYGMGGVGKTTLVKQVAKQV 200 (658)
Q Consensus 152 ~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 200 (658)
-+...++|.+..++.+.-.+.+.+..-+.+.|..|.||||+|+.+..-.
T Consensus 5 ~~f~~i~Gq~~~~~~l~~~~~~~~~~~vLl~G~pG~gKT~lar~la~ll 53 (334)
T PRK13407 5 FPFSAIVGQEEMKQAMVLTAIDPGIGGVLVFGDRGTGKSTAVRALAALL 53 (334)
T ss_pred CCHHHhCCHHHHHHHHHHHHhccCCCcEEEEcCCCCCHHHHHHHHHHHC
Confidence 3466789999998887755544445569999999999999999998765
No 369
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=94.51 E-value=0.056 Score=50.74 Aligned_cols=50 Identities=26% Similarity=0.406 Sum_probs=34.9
Q ss_pred HHHHHHHHHhccCCccEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEE
Q 047163 162 EVFQDVMEALKDDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAE 213 (658)
Q Consensus 162 ~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~ 213 (658)
..-...++.+. ...++.+.|++|.|||.||....-+.-....|+.++++.
T Consensus 7 ~~Q~~~~~al~--~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~R 56 (205)
T PF02562_consen 7 EEQKFALDALL--NNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITR 56 (205)
T ss_dssp HHHHHHHHHHH--H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE
T ss_pred HHHHHHHHHHH--hCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEe
Confidence 33444555555 456999999999999999999997765557888887764
No 370
>PRK14529 adenylate kinase; Provisional
Probab=94.51 E-value=0.13 Score=49.17 Aligned_cols=83 Identities=17% Similarity=0.086 Sum_probs=44.6
Q ss_pred EEEEEcCCCChHHHHHHHHHHHhhhccCCC--EEEEEEEcCCCCHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhcC
Q 047163 178 IIGVYGMGGVGKTTLVKQVAKQVMEDKLFD--KVVMAEVTQNPDHHKIQDKLAFGLGMEFGFNENMFQRASRLCERLKKE 255 (658)
Q Consensus 178 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~--~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 255 (658)
.|.|.|++|+||||+|+.++..... .+.+ ..+.-.+..........++++..-.. ...+-....+.+.+...
T Consensus 2 ~I~l~G~PGsGK~T~a~~La~~~~~-~~is~gdllr~~i~~~t~lg~~i~~~i~~G~l-----vpdei~~~lv~~~l~~~ 75 (223)
T PRK14529 2 NILIFGPNGSGKGTQGALVKKKYDL-AHIESGAIFREHIGGGTELGKKAKEYIDRGDL-----VPDDITIPMILETLKQD 75 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCC-CCcccchhhhhhccCCChHHHHHHHHHhccCc-----chHHHHHHHHHHHHhcc
Confidence 3788999999999999999988753 2232 11122222222333334444432111 12223344556666532
Q ss_pred CeEEEEEecCC
Q 047163 256 KRLLIILDNIW 266 (658)
Q Consensus 256 k~~LlVlDdv~ 266 (658)
..-=+|||+.=
T Consensus 76 ~~~g~iLDGfP 86 (223)
T PRK14529 76 GKNGWLLDGFP 86 (223)
T ss_pred CCCcEEEeCCC
Confidence 23447788763
No 371
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=94.50 E-value=0.029 Score=50.13 Aligned_cols=20 Identities=45% Similarity=0.705 Sum_probs=18.9
Q ss_pred EEEEEcCCCChHHHHHHHHH
Q 047163 178 IIGVYGMGGVGKTTLVKQVA 197 (658)
Q Consensus 178 vi~I~G~gGiGKTtLa~~v~ 197 (658)
.|+|.|.+|+||||+++.+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999998
No 372
>PRK14530 adenylate kinase; Provisional
Probab=94.49 E-value=0.034 Score=53.37 Aligned_cols=25 Identities=28% Similarity=0.298 Sum_probs=22.2
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHhh
Q 047163 177 NIIGVYGMGGVGKTTLVKQVAKQVM 201 (658)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (658)
+.|.|+|++|+||||+|+.+.....
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~~ 28 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEFG 28 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3689999999999999999987764
No 373
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=94.44 E-value=0.026 Score=48.13 Aligned_cols=24 Identities=42% Similarity=0.541 Sum_probs=18.2
Q ss_pred EEEEcCCCChHHHHHHHHHHHhhh
Q 047163 179 IGVYGMGGVGKTTLVKQVAKQVME 202 (658)
Q Consensus 179 i~I~G~gGiGKTtLa~~v~~~~~~ 202 (658)
|.|+|.+|+||||+|+.++.....
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~~ 25 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLGL 25 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT-
T ss_pred EeeECCCccHHHHHHHHHHHHcCC
Confidence 679999999999999999988754
No 374
>PTZ00185 ATPase alpha subunit; Provisional
Probab=94.37 E-value=0.36 Score=51.32 Aligned_cols=92 Identities=15% Similarity=0.163 Sum_probs=55.1
Q ss_pred cEEEEEcCCCChHHHHH-HHHHHHhhh-----ccCCCEEEEEEEcCCCCHHHHHHHHHHhcC-CCC-------CCCCCHH
Q 047163 177 NIIGVYGMGGVGKTTLV-KQVAKQVME-----DKLFDKVVMAEVTQNPDHHKIQDKLAFGLG-MEF-------GFNENMF 242 (658)
Q Consensus 177 ~vi~I~G~gGiGKTtLa-~~v~~~~~~-----~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~-~~~-------~~~~~~~ 242 (658)
..++|.|-.|+|||+|| -.+.+.... .++-+.++++-+++......-+.+.++.-+ ... ..+....
T Consensus 190 QR~lIfGd~GtGKTtLAld~IinQ~~~~~~~~~~~~~v~VyvaIGeR~rEV~ei~~~L~e~GaL~~TvVV~AtAdep~~~ 269 (574)
T PTZ00185 190 QRELIVGDRQTGKTSIAVSTIINQVRINQQILSKNAVISIYVSIGQRCSNVARIHRLLRSYGALRYTTVMAATAAEPAGL 269 (574)
T ss_pred CEEEeecCCCCChHHHHHHHHHhhhhhccccccCCCCEEEEEEeccchHHHHHHHHHHHhcCCccceEEEEECCCCCHHH
Confidence 47899999999999997 556666522 123467889999888654443444444433 110 0011111
Q ss_pred H-----HHHHHHHHHh-cCCeEEEEEecCCcc
Q 047163 243 Q-----RASRLCERLK-KEKRLLIILDNIWIE 268 (658)
Q Consensus 243 ~-----~~~~l~~~l~-~~k~~LlVlDdv~~~ 268 (658)
+ ..-.+-++++ .++.+|+|+||+...
T Consensus 270 r~~Apy~a~tiAEYFrd~GkdVLiv~DDLTr~ 301 (574)
T PTZ00185 270 QYLAPYSGVTMGEYFMNRGRHCLCVYDDLSKQ 301 (574)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEEcCchHH
Confidence 1 1222344442 479999999999754
No 375
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=94.37 E-value=0.079 Score=51.27 Aligned_cols=87 Identities=17% Similarity=0.255 Sum_probs=51.5
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCCCCHHHHHHHHHHhcCCC----------------CC-C-
Q 047163 176 LNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQNPDHHKIQDKLAFGLGME----------------FG-F- 237 (658)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~----------------~~-~- 237 (658)
-.++.|.|.+|+|||+++.++......+. =..++|++..++ ...+.+.+- .++.+ .. .
T Consensus 19 gs~~li~G~~GsGKT~l~~q~l~~~~~~~-ge~vlyvs~ee~--~~~l~~~~~-s~g~d~~~~~~~g~l~~~d~~~~~~~ 94 (226)
T PF06745_consen 19 GSVVLISGPPGSGKTTLALQFLYNGLKNF-GEKVLYVSFEEP--PEELIENMK-SFGWDLEEYEDSGKLKIIDAFPERIG 94 (226)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHHH-T--EEEEESSS---HHHHHHHHH-TTTS-HHHHHHTTSEEEEESSGGGST
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHhhhhc-CCcEEEEEecCC--HHHHHHHHH-HcCCcHHHHhhcCCEEEEeccccccc
Confidence 35999999999999999999776553320 135678887555 344444432 22211 00 0
Q ss_pred --CCCHHHHHHHHHHHHhcCCeEEEEEecCC
Q 047163 238 --NENMFQRASRLCERLKKEKRLLIILDNIW 266 (658)
Q Consensus 238 --~~~~~~~~~~l~~~l~~~k~~LlVlDdv~ 266 (658)
..+..+....+.+.++.-+...+|+|.+.
T Consensus 95 ~~~~~~~~l~~~i~~~i~~~~~~~vVIDsls 125 (226)
T PF06745_consen 95 WSPNDLEELLSKIREAIEELKPDRVVIDSLS 125 (226)
T ss_dssp -TSCCHHHHHHHHHHHHHHHTSSEEEEETHH
T ss_pred ccccCHHHHHHHHHHHHHhcCCCEEEEECHH
Confidence 23445555666666654345788999874
No 376
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=94.36 E-value=0.12 Score=54.42 Aligned_cols=89 Identities=18% Similarity=0.231 Sum_probs=48.1
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCCCCHHHHHHHHHHhc-----CCCCCCCCCHH------HHH
Q 047163 177 NIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQNPDHHKIQDKLAFGL-----GMEFGFNENMF------QRA 245 (658)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l-----~~~~~~~~~~~------~~~ 245 (658)
..++|+|..|+|||||++.+...... ...+++..--...++..+.+..+... ..-........ ..+
T Consensus 166 qri~I~G~SGsGKTTLL~~Ia~l~~p---d~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~~~a 242 (450)
T PRK06002 166 QRIGIFAGSGVGKSTLLAMLARADAF---DTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAPLTA 242 (450)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCC---CeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHHHHH
Confidence 48999999999999999988765432 22444443222334444433333221 11001011111 112
Q ss_pred HHHHHHHh-cCCeEEEEEecCCcc
Q 047163 246 SRLCERLK-KEKRLLIILDNIWIE 268 (658)
Q Consensus 246 ~~l~~~l~-~~k~~LlVlDdv~~~ 268 (658)
-.+-++++ .++.+|+++||+...
T Consensus 243 ~~iAEyfrd~G~~Vll~~DslTr~ 266 (450)
T PRK06002 243 TAIAEYFRDRGENVLLIVDSVTRF 266 (450)
T ss_pred HHHHHHHHHcCCCEEEeccchHHH
Confidence 22344443 479999999998653
No 377
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=94.36 E-value=0.042 Score=49.30 Aligned_cols=28 Identities=29% Similarity=0.649 Sum_probs=25.4
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHHhhhc
Q 047163 176 LNIIGVYGMGGVGKTTLVKQVAKQVMED 203 (658)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 203 (658)
.+|++|+|+.|+|||||...+....+.+
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~~L~~~ 29 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVRKLKAR 29 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHHHHHHhC
Confidence 4699999999999999999999988764
No 378
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=94.35 E-value=0.037 Score=49.80 Aligned_cols=23 Identities=43% Similarity=0.520 Sum_probs=20.9
Q ss_pred EEEEcCCCChHHHHHHHHHHHhh
Q 047163 179 IGVYGMGGVGKTTLVKQVAKQVM 201 (658)
Q Consensus 179 i~I~G~gGiGKTtLa~~v~~~~~ 201 (658)
|.|+|++|+||||+|+.+.....
T Consensus 2 i~l~G~~GsGKstla~~la~~l~ 24 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALG 24 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhC
Confidence 78999999999999999988763
No 379
>PRK00300 gmk guanylate kinase; Provisional
Probab=94.34 E-value=0.036 Score=52.76 Aligned_cols=25 Identities=36% Similarity=0.426 Sum_probs=22.6
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHHh
Q 047163 176 LNIIGVYGMGGVGKTTLVKQVAKQV 200 (658)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~ 200 (658)
-.+|+|+|+.|+||||||+.+....
T Consensus 5 g~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 5 GLLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3589999999999999999999864
No 380
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=94.34 E-value=0.098 Score=52.20 Aligned_cols=56 Identities=25% Similarity=0.245 Sum_probs=42.8
Q ss_pred ccccccchHHHHH---HHHHHhccCC--ccEEEEEcCCCChHHHHHHHHHHHhhhccCCCE
Q 047163 153 DFEAFDSKMEVFQ---DVMEALKDDK--LNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDK 208 (658)
Q Consensus 153 ~~~~~~gr~~~~~---~l~~~l~~~~--~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~ 208 (658)
...++||..+..+ -+++++.++. -+.|.|+|++|.|||+||-.+.+....+-+|..
T Consensus 37 ~~dG~VGQ~~AReAaGvIv~mik~gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~~ 97 (450)
T COG1224 37 IGDGLVGQEEAREAAGVIVKMIKQGKMAGRGILIVGPPGTGKTALAMGIARELGEDVPFVA 97 (450)
T ss_pred cCCcccchHHHHHhhhHHHHHHHhCcccccEEEEECCCCCcHHHHHHHHHHHhCCCCCcee
Confidence 4567888776544 3566666443 368999999999999999999999987777743
No 381
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=94.32 E-value=0.041 Score=52.09 Aligned_cols=26 Identities=31% Similarity=0.501 Sum_probs=22.9
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHhhh
Q 047163 177 NIIGVYGMGGVGKTTLVKQVAKQVME 202 (658)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~~ 202 (658)
.+++|+|.+|+|||||++.+..-.+.
T Consensus 34 e~lgivGeSGsGKSTL~r~l~Gl~~p 59 (252)
T COG1124 34 ETLGIVGESGSGKSTLARLLAGLEKP 59 (252)
T ss_pred CEEEEEcCCCCCHHHHHHHHhcccCC
Confidence 38999999999999999999876654
No 382
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=94.32 E-value=0.042 Score=50.57 Aligned_cols=26 Identities=35% Similarity=0.373 Sum_probs=22.9
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHHhh
Q 047163 176 LNIIGVYGMGGVGKTTLVKQVAKQVM 201 (658)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (658)
.+.|.|+|+.|+||||+|+.+.....
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~ 29 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLN 29 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcC
Confidence 34799999999999999999998753
No 383
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=94.31 E-value=0.033 Score=52.02 Aligned_cols=24 Identities=25% Similarity=0.476 Sum_probs=21.3
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHh
Q 047163 177 NIIGVYGMGGVGKTTLVKQVAKQV 200 (658)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~ 200 (658)
.++.|+|+.|+|||||++.+....
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 378999999999999999997654
No 384
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=94.28 E-value=0.08 Score=52.40 Aligned_cols=34 Identities=21% Similarity=0.329 Sum_probs=28.6
Q ss_pred HHhccCCccEEEEEcCCCChHHHHHHHHHHHhhh
Q 047163 169 EALKDDKLNIIGVYGMGGVGKTTLVKQVAKQVME 202 (658)
Q Consensus 169 ~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 202 (658)
+++...+..+|.|+|.+|+|||||+..+.+....
T Consensus 97 ~~~~~~~~~~v~l~G~pGsGKTTLl~~l~~~l~~ 130 (290)
T PRK10463 97 ARFAARKQLVLNLVSSPGSGKTTLLTETLMRLKD 130 (290)
T ss_pred HHHHhcCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 3344567889999999999999999999998754
No 385
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=94.26 E-value=0.11 Score=57.78 Aligned_cols=77 Identities=17% Similarity=0.238 Sum_probs=50.8
Q ss_pred cccccccchHHHHHHHHHHhccCCccEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCCCCHHHHHHHHHHhc
Q 047163 152 KDFEAFDSKMEVFQDVMEALKDDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQNPDHHKIQDKLAFGL 231 (658)
Q Consensus 152 ~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l 231 (658)
.-...++|.++.++.+...+.... .+.++|+.|+||||+|+.+.+..... .|...+++.- ...+...+++.++.++
T Consensus 15 ~~~~~viG~~~a~~~l~~a~~~~~--~~ll~G~pG~GKT~la~~la~~l~~~-~~~~~~~~~n-~~~~~~~~~~~v~~~~ 90 (608)
T TIGR00764 15 RLIDQVIGQEEAVEIIKKAAKQKR--NVLLIGEPGVGKSMLAKAMAELLPDE-ELEDILVYPN-PEDPNMPRIVEVPAGE 90 (608)
T ss_pred hhHhhccCHHHHHHHHHHHHHcCC--CEEEECCCCCCHHHHHHHHHHHcCch-hheeEEEEeC-CCCCchHHHHHHHHhh
Confidence 445678899998887777665543 56699999999999999999877542 3433333222 2223444566666555
Q ss_pred C
Q 047163 232 G 232 (658)
Q Consensus 232 ~ 232 (658)
+
T Consensus 91 g 91 (608)
T TIGR00764 91 G 91 (608)
T ss_pred c
Confidence 4
No 386
>PRK03846 adenylylsulfate kinase; Provisional
Probab=94.26 E-value=0.048 Score=51.53 Aligned_cols=30 Identities=23% Similarity=0.378 Sum_probs=25.7
Q ss_pred cCCccEEEEEcCCCChHHHHHHHHHHHhhh
Q 047163 173 DDKLNIIGVYGMGGVGKTTLVKQVAKQVME 202 (658)
Q Consensus 173 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 202 (658)
.....+|+|+|++|+||||||+.+......
T Consensus 21 ~~~~~~i~i~G~~GsGKSTla~~l~~~l~~ 50 (198)
T PRK03846 21 GHKGVVLWFTGLSGSGKSTVAGALEEALHE 50 (198)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 355679999999999999999999987643
No 387
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=94.26 E-value=0.18 Score=51.04 Aligned_cols=30 Identities=23% Similarity=0.492 Sum_probs=26.1
Q ss_pred cCCccEEEEEcCCCChHHHHHHHHHHHhhh
Q 047163 173 DDKLNIIGVYGMGGVGKTTLVKQVAKQVME 202 (658)
Q Consensus 173 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 202 (658)
.+...+|+|+|.+|+|||||+..+......
T Consensus 31 ~~~~~~i~i~G~~G~GKttl~~~l~~~~~~ 60 (300)
T TIGR00750 31 TGNAHRVGITGTPGAGKSTLLEALGMELRR 60 (300)
T ss_pred cCCceEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 356789999999999999999999987654
No 388
>PRK14527 adenylate kinase; Provisional
Probab=94.23 E-value=0.046 Score=51.31 Aligned_cols=28 Identities=25% Similarity=0.361 Sum_probs=24.4
Q ss_pred CCccEEEEEcCCCChHHHHHHHHHHHhh
Q 047163 174 DKLNIIGVYGMGGVGKTTLVKQVAKQVM 201 (658)
Q Consensus 174 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (658)
....+|.|+|++|+||||+|+.+.....
T Consensus 4 ~~~~~i~i~G~pGsGKsT~a~~La~~~~ 31 (191)
T PRK14527 4 TKNKVVIFLGPPGAGKGTQAERLAQELG 31 (191)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3457899999999999999999988774
No 389
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=94.22 E-value=0.18 Score=54.85 Aligned_cols=86 Identities=16% Similarity=0.266 Sum_probs=56.8
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCCCCHHHHHHHHHHhcCCCCC---------------CCCC
Q 047163 176 LNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQNPDHHKIQDKLAFGLGMEFG---------------FNEN 240 (658)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~---------------~~~~ 240 (658)
-.++.|.|.+|+|||||+.++......+ =..+++++..+. ..++.+.. +.++.+.. ....
T Consensus 263 gs~~li~G~~G~GKt~l~~~f~~~~~~~--ge~~~y~s~eEs--~~~i~~~~-~~lg~~~~~~~~~g~l~~~~~~p~~~~ 337 (484)
T TIGR02655 263 DSIILATGATGTGKTLLVSKFLENACAN--KERAILFAYEES--RAQLLRNA-YSWGIDFEEMEQQGLLKIICAYPESAG 337 (484)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEEeeCC--HHHHHHHH-HHcCCChHHHhhCCcEEEEEcccccCC
Confidence 3589999999999999999999887543 346777776544 55555543 33332211 1123
Q ss_pred HHHHHHHHHHHHhcCCeEEEEEecCC
Q 047163 241 MFQRASRLCERLKKEKRLLIILDNIW 266 (658)
Q Consensus 241 ~~~~~~~l~~~l~~~k~~LlVlDdv~ 266 (658)
..+.+..+.+.+...+.-.+|+|.+.
T Consensus 338 ~~~~~~~i~~~i~~~~~~~vvIDsi~ 363 (484)
T TIGR02655 338 LEDHLQIIKSEIADFKPARIAIDSLS 363 (484)
T ss_pred hHHHHHHHHHHHHHcCCCEEEEcCHH
Confidence 35566777777765556688999875
No 390
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=94.19 E-value=0.059 Score=59.06 Aligned_cols=49 Identities=27% Similarity=0.366 Sum_probs=40.3
Q ss_pred cccccccchHHHHHHHHHHhccCCccEEEEEcCCCChHHHHHHHHHHHh
Q 047163 152 KDFEAFDSKMEVFQDVMEALKDDKLNIIGVYGMGGVGKTTLVKQVAKQV 200 (658)
Q Consensus 152 ~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 200 (658)
.....++|.+..++.+...+......-+.|+|..|+|||++|+.+++..
T Consensus 62 ~~f~~iiGqs~~i~~l~~al~~~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 110 (531)
T TIGR02902 62 KSFDEIIGQEEGIKALKAALCGPNPQHVIIYGPPGVGKTAAARLVLEEA 110 (531)
T ss_pred CCHHHeeCcHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 4456789999999888877665555678899999999999999998754
No 391
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=94.18 E-value=0.067 Score=53.00 Aligned_cols=50 Identities=14% Similarity=0.212 Sum_probs=39.6
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCCCCHHHHHHHHH
Q 047163 175 KLNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQNPDHHKIQDKLA 228 (658)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~ 228 (658)
.-+++.|.|.+|+|||+++.++....... ...++||+..+. ...+.+...
T Consensus 22 ~g~~~lI~G~pGsGKT~f~~qfl~~~~~~--ge~vlyvs~~e~--~~~l~~~~~ 71 (260)
T COG0467 22 RGSVVLITGPPGTGKTIFALQFLYEGARE--GEPVLYVSTEES--PEELLENAR 71 (260)
T ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHHHhc--CCcEEEEEecCC--HHHHHHHHH
Confidence 34699999999999999999999888754 788999998765 444444443
No 392
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=94.18 E-value=0.097 Score=52.90 Aligned_cols=48 Identities=29% Similarity=0.401 Sum_probs=34.7
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCCCCHHHHHH
Q 047163 176 LNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQNPDHHKIQD 225 (658)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~ 225 (658)
.+++.+.|.||+||||+|....-...... ..+.-|+.....+..+++.
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA~~g--~kvLlvStDPAhsL~d~f~ 49 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLAESG--KKVLLVSTDPAHSLGDVFD 49 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHHHcC--CcEEEEEeCCCCchHhhhc
Confidence 46899999999999999999777766532 4466776665555554443
No 393
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=94.17 E-value=0.052 Score=51.71 Aligned_cols=30 Identities=23% Similarity=0.429 Sum_probs=26.6
Q ss_pred ccCCccEEEEEcCCCChHHHHHHHHHHHhh
Q 047163 172 KDDKLNIIGVYGMGGVGKTTLVKQVAKQVM 201 (658)
Q Consensus 172 ~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (658)
..+++++|+++|..|+|||||...+.+...
T Consensus 18 ~~~~~~~i~~~G~~gsGKTTli~~l~~~~~ 47 (207)
T TIGR00073 18 DKHGLVVLNFMSSPGSGKTTLIEKLIDNLK 47 (207)
T ss_pred hhcCcEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 357899999999999999999999988753
No 394
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=94.16 E-value=0.035 Score=48.90 Aligned_cols=23 Identities=39% Similarity=0.665 Sum_probs=20.6
Q ss_pred EEEEEcCCCChHHHHHHHHHHHh
Q 047163 178 IIGVYGMGGVGKTTLVKQVAKQV 200 (658)
Q Consensus 178 vi~I~G~gGiGKTtLa~~v~~~~ 200 (658)
.|+|+|+.|+|||||++.+....
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~ 23 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEF 23 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcC
Confidence 37899999999999999999764
No 395
>PF13245 AAA_19: Part of AAA domain
Probab=94.15 E-value=0.12 Score=40.10 Aligned_cols=26 Identities=35% Similarity=0.439 Sum_probs=18.9
Q ss_pred CccEEEEEcCCCChHH-HHHHHHHHHh
Q 047163 175 KLNIIGVYGMGGVGKT-TLVKQVAKQV 200 (658)
Q Consensus 175 ~~~vi~I~G~gGiGKT-tLa~~v~~~~ 200 (658)
+.+++.|.|.+|.||| |++..+.+-.
T Consensus 9 ~~~~~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 9 GSPLFVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred hCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 4567888999999999 5555555444
No 396
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=94.14 E-value=0.042 Score=45.53 Aligned_cols=21 Identities=29% Similarity=0.379 Sum_probs=19.5
Q ss_pred cEEEEEcCCCChHHHHHHHHH
Q 047163 177 NIIGVYGMGGVGKTTLVKQVA 197 (658)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~ 197 (658)
..++|+|+.|+|||||++.+.
T Consensus 16 e~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 16 VGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEEcCCCCCHHHHHHHhh
Confidence 579999999999999999986
No 397
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=94.11 E-value=0.035 Score=50.59 Aligned_cols=22 Identities=27% Similarity=0.581 Sum_probs=19.9
Q ss_pred EEEEcCCCChHHHHHHHHHHHh
Q 047163 179 IGVYGMGGVGKTTLVKQVAKQV 200 (658)
Q Consensus 179 i~I~G~gGiGKTtLa~~v~~~~ 200 (658)
|.|+|++|+||||+|+.+....
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL 22 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999776
No 398
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=94.11 E-value=0.044 Score=49.33 Aligned_cols=33 Identities=21% Similarity=0.408 Sum_probs=25.9
Q ss_pred EEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEE
Q 047163 178 IIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVM 211 (658)
Q Consensus 178 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~w 211 (658)
|++|+|+.|+|||||+..+....+.+ .+...+.
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~~~-G~~V~vi 33 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALKAR-GYRVATI 33 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhc-CCeEEEE
Confidence 58999999999999999999987643 3443333
No 399
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=94.11 E-value=0.048 Score=51.19 Aligned_cols=25 Identities=32% Similarity=0.425 Sum_probs=22.6
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHHh
Q 047163 176 LNIIGVYGMGGVGKTTLVKQVAKQV 200 (658)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~ 200 (658)
..+|.|.|.+|+||||+|+.+....
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~ 27 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHR 27 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4589999999999999999999875
No 400
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=94.11 E-value=0.066 Score=49.88 Aligned_cols=36 Identities=31% Similarity=0.456 Sum_probs=28.2
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEE
Q 047163 176 LNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAE 213 (658)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~ 213 (658)
.++|.|+|+.|+|||||++.+......+ |..+++.+
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~~~--~~~~v~~T 37 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFPDK--FGRVVSHT 37 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHSTTT--EEEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcccc--cccceeec
Confidence 4689999999999999999999876533 65444444
No 401
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=94.10 E-value=0.12 Score=53.08 Aligned_cols=61 Identities=23% Similarity=0.186 Sum_probs=44.9
Q ss_pred ccchHHHHHHHHHHhccCCccEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCCCCHHHHH
Q 047163 157 FDSKMEVFQDVMEALKDDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQNPDHHKIQ 224 (658)
Q Consensus 157 ~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~ 224 (658)
++|+++.+..+...+..++ .+.+.|.+|+|||+||+.+...... ..+++.+.......++.
T Consensus 26 ~~g~~~~~~~~l~a~~~~~--~vll~G~PG~gKT~la~~lA~~l~~-----~~~~i~~t~~l~p~d~~ 86 (329)
T COG0714 26 VVGDEEVIELALLALLAGG--HVLLEGPPGVGKTLLARALARALGL-----PFVRIQCTPDLLPSDLL 86 (329)
T ss_pred eeccHHHHHHHHHHHHcCC--CEEEECCCCccHHHHHHHHHHHhCC-----CeEEEecCCCCCHHHhc
Confidence 7788888877776665544 6899999999999999999988752 23456666555555443
No 402
>PRK13975 thymidylate kinase; Provisional
Probab=94.08 E-value=0.047 Score=51.52 Aligned_cols=26 Identities=35% Similarity=0.464 Sum_probs=23.5
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHhhh
Q 047163 177 NIIGVYGMGGVGKTTLVKQVAKQVME 202 (658)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~~ 202 (658)
.+|.|.|+.|+||||+|+.+......
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l~~ 28 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLNA 28 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 47999999999999999999988753
No 403
>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=94.06 E-value=0.36 Score=51.32 Aligned_cols=92 Identities=17% Similarity=0.161 Sum_probs=57.9
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHhhhccCCC--EEEEEEEcCCC-CHHHHHHHHHHhcCCCCC------CCCCH------
Q 047163 177 NIIGVYGMGGVGKTTLVKQVAKQVMEDKLFD--KVVMAEVTQNP-DHHKIQDKLAFGLGMEFG------FNENM------ 241 (658)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~--~~~wv~v~~~~-~~~~~~~~i~~~l~~~~~------~~~~~------ 241 (658)
..++|.|-.|+|||||+.++.+.......+. .++++-+++.. ....+.+.+...-..... .+.+.
T Consensus 142 QR~gIfgg~G~GKs~L~~~ia~~~~ad~~~~~~v~V~~~iGERgrEv~efi~~~~~~~~l~rtvvv~atsd~p~~~R~~a 221 (458)
T TIGR01041 142 QKLPIFSGSGLPHNELAAQIARQATVRGEESEFAVVFAAMGITYEEANFFMKDFEETGALERAVVFLNLADDPAVERIVT 221 (458)
T ss_pred CEEEeeCCCCCCHHHHHHHHHHhhcccCCCCceEEEEEEccccchHHHHHHHHHHhcCCcceEEEEEECCCCCHHHHHHH
Confidence 4789999999999999999998775431121 56777777764 445566665533211110 01111
Q ss_pred HHHHHHHHHHHh--cCCeEEEEEecCCcc
Q 047163 242 FQRASRLCERLK--KEKRLLIILDNIWIE 268 (658)
Q Consensus 242 ~~~~~~l~~~l~--~~k~~LlVlDdv~~~ 268 (658)
.-.+..+-++++ +++++|+++||+...
T Consensus 222 ~~~a~tiAEyfr~d~G~~VLli~DslTR~ 250 (458)
T TIGR01041 222 PRMALTAAEYLAFEKDMHVLVILTDMTNY 250 (458)
T ss_pred HHHHHHHHHHHHHccCCcEEEEEcChhHH
Confidence 112234566666 589999999999754
No 404
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.05 E-value=0.21 Score=50.43 Aligned_cols=26 Identities=35% Similarity=0.345 Sum_probs=23.1
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHhhh
Q 047163 177 NIIGVYGMGGVGKTTLVKQVAKQVME 202 (658)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~~ 202 (658)
+-|..+|++|.|||-||+.|+....+
T Consensus 246 kgvLm~GPPGTGKTlLAKAvATEc~t 271 (491)
T KOG0738|consen 246 KGVLMVGPPGTGKTLLAKAVATECGT 271 (491)
T ss_pred ceeeeeCCCCCcHHHHHHHHHHhhcC
Confidence 46889999999999999999988764
No 405
>PRK13948 shikimate kinase; Provisional
Probab=94.03 E-value=0.057 Score=49.97 Aligned_cols=28 Identities=18% Similarity=0.411 Sum_probs=24.4
Q ss_pred CCccEEEEEcCCCChHHHHHHHHHHHhh
Q 047163 174 DKLNIIGVYGMGGVGKTTLVKQVAKQVM 201 (658)
Q Consensus 174 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (658)
.....|.++|+.|+||||+++.+.....
T Consensus 8 ~~~~~I~LiG~~GsGKSTvg~~La~~lg 35 (182)
T PRK13948 8 RPVTWVALAGFMGTGKSRIGWELSRALM 35 (182)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3457899999999999999999998764
No 406
>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=93.99 E-value=0.19 Score=52.89 Aligned_cols=92 Identities=23% Similarity=0.238 Sum_probs=58.4
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHhhhcc--CCC---------EEEEEEEcCCCCHHHHHHHHHHhcC-CCCC-----C-C
Q 047163 177 NIIGVYGMGGVGKTTLVKQVAKQVMEDK--LFD---------KVVMAEVTQNPDHHKIQDKLAFGLG-MEFG-----F-N 238 (658)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~--~F~---------~~~wv~v~~~~~~~~~~~~i~~~l~-~~~~-----~-~ 238 (658)
..++|.|-.|+|||||+.++.+...... ..| .++++-+++.......+.+.+..-+ .... + .
T Consensus 142 QRigIfagsGvGKs~L~~~i~~~~~~~~~~~aD~~~~~~~~~v~V~a~IGerre~~efi~~~l~~~g~l~rtvvv~atsd 221 (466)
T TIGR01040 142 QKIPIFSAAGLPHNEIAAQICRQAGLVKLPTKDVHDGHEDNFAIVFAAMGVNMETARFFKQDFEENGSMERVCLFLNLAN 221 (466)
T ss_pred CeeeeecCCCCCHHHHHHHHHHhhccccccccccccccCCceEEEEEEeeeehHHHHHHHHHHHhcCCcceEEEEEECCC
Confidence 4789999999999999999998875100 012 6678888887666665555555444 1110 0 1
Q ss_pred CCHH------HHHHHHHHHHh--cCCeEEEEEecCCcc
Q 047163 239 ENMF------QRASRLCERLK--KEKRLLIILDNIWIE 268 (658)
Q Consensus 239 ~~~~------~~~~~l~~~l~--~~k~~LlVlDdv~~~ 268 (658)
.+.. ..+-.+-++++ .++.+|+++||+...
T Consensus 222 ~p~~~R~~a~~~a~tiAEyfr~~~G~~VLl~~DslTr~ 259 (466)
T TIGR01040 222 DPTIERIITPRLALTTAEYLAYQCEKHVLVILTDMSSY 259 (466)
T ss_pred CCHHHHHHHHhhhHHHHHHHHHhcCCcEEEeccChHHH
Confidence 1111 12223556665 479999999999654
No 407
>PRK13695 putative NTPase; Provisional
Probab=93.98 E-value=0.081 Score=48.81 Aligned_cols=25 Identities=52% Similarity=0.707 Sum_probs=22.2
Q ss_pred EEEEEcCCCChHHHHHHHHHHHhhh
Q 047163 178 IIGVYGMGGVGKTTLVKQVAKQVME 202 (658)
Q Consensus 178 vi~I~G~gGiGKTtLa~~v~~~~~~ 202 (658)
.|+|+|.+|+|||||++.+++....
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~~ 26 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLKE 26 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4789999999999999999988654
No 408
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=93.95 E-value=0.22 Score=45.54 Aligned_cols=81 Identities=16% Similarity=0.174 Sum_probs=44.7
Q ss_pred EEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhcC-Ce
Q 047163 179 IGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQNPDHHKIQDKLAFGLGMEFGFNENMFQRASRLCERLKKE-KR 257 (658)
Q Consensus 179 i~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~-k~ 257 (658)
+.|.|..|+|||++|.++.... ...++++.-.+..+.. +.+.|......... .-...+....+.+.+... +.
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~-----~~~~~y~at~~~~d~e-m~~rI~~H~~~R~~-~w~t~E~~~~l~~~l~~~~~~ 74 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAEL-----GGPVTYIATAEAFDDE-MAERIARHRKRRPA-HWRTIETPRDLVSALKELDPG 74 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhc-----CCCeEEEEccCcCCHH-HHHHHHHHHHhCCC-CceEeecHHHHHHHHHhcCCC
Confidence 6799999999999999997651 2356666666555443 44444332211111 111112223344444321 23
Q ss_pred EEEEEecCC
Q 047163 258 LLIILDNIW 266 (658)
Q Consensus 258 ~LlVlDdv~ 266 (658)
-.+++|.+.
T Consensus 75 ~~VLIDclt 83 (169)
T cd00544 75 DVVLIDCLT 83 (169)
T ss_pred CEEEEEcHh
Confidence 378899874
No 409
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=93.95 E-value=0.15 Score=53.09 Aligned_cols=48 Identities=25% Similarity=0.225 Sum_probs=37.5
Q ss_pred cccccchHHHHHHHHHHhcc--------------CCccEEEEEcCCCChHHHHHHHHHHHhh
Q 047163 154 FEAFDSKMEVFQDVMEALKD--------------DKLNIIGVYGMGGVGKTTLVKQVAKQVM 201 (658)
Q Consensus 154 ~~~~~gr~~~~~~l~~~l~~--------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (658)
...++|.+..++.+..++.. -..+.|.++|+.|+|||++|+.+.....
T Consensus 14 d~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~ 75 (443)
T PRK05201 14 DKYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLAN 75 (443)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 34578988888887766632 0136789999999999999999998864
No 410
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=93.95 E-value=0.53 Score=49.75 Aligned_cols=91 Identities=21% Similarity=0.337 Sum_probs=57.9
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCCC-CHHHHHHHHHHhcCCCC------CCCCCHHH------
Q 047163 177 NIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQNP-DHHKIQDKLAFGLGMEF------GFNENMFQ------ 243 (658)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~-~~~~~~~~i~~~l~~~~------~~~~~~~~------ 243 (658)
..++|.|..|+|||||+.++....... +-+.++++-+++.. ...++++.+...-.... ....+...
T Consensus 144 Qr~~If~~~G~GKt~L~~~~~~~~~~~-~~~v~V~alIGER~rEv~ef~~~~~~~~~l~rtvvV~atsd~p~~~R~~a~~ 222 (461)
T TIGR01039 144 GKIGLFGGAGVGKTVLIQELINNIAKE-HGGYSVFAGVGERTREGNDLYHEMKESGVIDKTALVYGQMNEPPGARMRVAL 222 (461)
T ss_pred CEEEeecCCCCChHHHHHHHHHHHHhc-CCCeEEEEEecCCchHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHHH
Confidence 479999999999999999998776532 23467788887764 34556666643321111 00111111
Q ss_pred HHHHHHHHHh--cCCeEEEEEecCCcc
Q 047163 244 RASRLCERLK--KEKRLLIILDNIWIE 268 (658)
Q Consensus 244 ~~~~l~~~l~--~~k~~LlVlDdv~~~ 268 (658)
.+-.+-++++ +++.+|+++||+...
T Consensus 223 ~a~tiAEyfrd~~G~~VLll~DslTR~ 249 (461)
T TIGR01039 223 TGLTMAEYFRDEQGQDVLLFIDNIFRF 249 (461)
T ss_pred HHHHHHHHHHHhcCCeeEEEecchhHH
Confidence 2234556664 378999999999754
No 411
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=93.94 E-value=0.057 Score=47.86 Aligned_cols=25 Identities=36% Similarity=0.595 Sum_probs=22.5
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHHh
Q 047163 176 LNIIGVYGMGGVGKTTLVKQVAKQV 200 (658)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~ 200 (658)
.+++.|+|.+|+||||+.+.+-...
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l 28 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKEL 28 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHH
Confidence 5799999999999999999887776
No 412
>PRK11823 DNA repair protein RadA; Provisional
Probab=93.93 E-value=0.13 Score=55.00 Aligned_cols=82 Identities=26% Similarity=0.345 Sum_probs=50.9
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCCCCHHHHHHHHHHhcCCCCC-----CCCCHHHHHHHHHHH
Q 047163 177 NIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQNPDHHKIQDKLAFGLGMEFG-----FNENMFQRASRLCER 251 (658)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~~~ 251 (658)
.++.|.|.+|+|||||+.+++...... -..++|++..+. ..++... +..++.... ...+ ...+.+.
T Consensus 81 s~~lI~G~pG~GKTtL~lq~a~~~a~~--g~~vlYvs~Ees--~~qi~~r-a~rlg~~~~~l~~~~e~~----l~~i~~~ 151 (446)
T PRK11823 81 SVVLIGGDPGIGKSTLLLQVAARLAAA--GGKVLYVSGEES--ASQIKLR-AERLGLPSDNLYLLAETN----LEAILAT 151 (446)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEEcccc--HHHHHHH-HHHcCCChhcEEEeCCCC----HHHHHHH
Confidence 488999999999999999998876532 245778876543 3344322 444443211 0112 2344444
Q ss_pred HhcCCeEEEEEecCCc
Q 047163 252 LKKEKRLLIILDNIWI 267 (658)
Q Consensus 252 l~~~k~~LlVlDdv~~ 267 (658)
++..+.-++|+|.+..
T Consensus 152 i~~~~~~lVVIDSIq~ 167 (446)
T PRK11823 152 IEEEKPDLVVIDSIQT 167 (446)
T ss_pred HHhhCCCEEEEechhh
Confidence 4444566899999853
No 413
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.93 E-value=0.28 Score=47.75 Aligned_cols=71 Identities=25% Similarity=0.298 Sum_probs=48.8
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhcC
Q 047163 176 LNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQNPDHHKIQDKLAFGLGMEFGFNENMFQRASRLCERLKKE 255 (658)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 255 (658)
-+-|.++|++|.||+-||+.|+...... |.+||.. ++.. +.++ +.+.....+++.-+.+
T Consensus 166 wrgiLLyGPPGTGKSYLAKAVATEAnST-------FFSvSSS----DLvS---KWmG-------ESEkLVknLFemARe~ 224 (439)
T KOG0739|consen 166 WRGILLYGPPGTGKSYLAKAVATEANST-------FFSVSSS----DLVS---KWMG-------ESEKLVKNLFEMAREN 224 (439)
T ss_pred ceeEEEeCCCCCcHHHHHHHHHhhcCCc-------eEEeehH----HHHH---HHhc-------cHHHHHHHHHHHHHhc
Confidence 4678899999999999999999876532 3455443 1111 1111 2344666777777778
Q ss_pred CeEEEEEecCCc
Q 047163 256 KRLLIILDNIWI 267 (658)
Q Consensus 256 k~~LlVlDdv~~ 267 (658)
|.-.|.+|.++.
T Consensus 225 kPSIIFiDEiDs 236 (439)
T KOG0739|consen 225 KPSIIFIDEIDS 236 (439)
T ss_pred CCcEEEeehhhh
Confidence 999999999973
No 414
>PRK13946 shikimate kinase; Provisional
Probab=93.93 E-value=0.051 Score=50.68 Aligned_cols=25 Identities=24% Similarity=0.413 Sum_probs=22.9
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHhh
Q 047163 177 NIIGVYGMGGVGKTTLVKQVAKQVM 201 (658)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (658)
+.|.++|+.|+||||+++.+.+...
T Consensus 11 ~~I~l~G~~GsGKsti~~~LA~~Lg 35 (184)
T PRK13946 11 RTVVLVGLMGAGKSTVGRRLATMLG 35 (184)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcC
Confidence 5799999999999999999998874
No 415
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=93.91 E-value=0.017 Score=32.67 Aligned_cols=21 Identities=33% Similarity=0.515 Sum_probs=13.2
Q ss_pred CCcEEEccCCCCCCCcccccc
Q 047163 526 ELKDLSLTRIPFSSLPSSLGS 546 (658)
Q Consensus 526 ~L~~L~l~~~~~~~lp~~i~~ 546 (658)
+|++|++++|.++.+|+++++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 366677777766666665443
No 416
>PRK06936 type III secretion system ATPase; Provisional
Probab=93.89 E-value=0.31 Score=51.30 Aligned_cols=89 Identities=18% Similarity=0.297 Sum_probs=54.4
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCCC-CHHHHHHHHHHhcCCCCC------CCCCHHH-----
Q 047163 176 LNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQNP-DHHKIQDKLAFGLGMEFG------FNENMFQ----- 243 (658)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~-~~~~~~~~i~~~l~~~~~------~~~~~~~----- 243 (658)
-..++|.|..|+|||||.+.+++... .+.++++-+++.. ...++.+..+..-+.... ...+...
T Consensus 162 Gq~~~I~G~sG~GKStLl~~Ia~~~~----~dv~V~~liGERgrEv~ef~~~~l~~~~l~rtvvv~atsd~p~~~R~~a~ 237 (439)
T PRK06936 162 GQRMGIFAAAGGGKSTLLASLIRSAE----VDVTVLALIGERGREVREFIESDLGEEGLRKAVLVVATSDRPSMERAKAG 237 (439)
T ss_pred CCEEEEECCCCCChHHHHHHHhcCCC----CCEEEEEEEccCcHHHHHHHHHHhcccccceeEEEEECCCCCHHHHHHHH
Confidence 34899999999999999999987654 3567888887765 333444443322111100 0111111
Q ss_pred -HHHHHHHHHh-cCCeEEEEEecCCcc
Q 047163 244 -RASRLCERLK-KEKRLLIILDNIWIE 268 (658)
Q Consensus 244 -~~~~l~~~l~-~~k~~LlVlDdv~~~ 268 (658)
.+-.+-++++ .+|++|+++|++...
T Consensus 238 ~~a~tiAEyfrd~G~~Vll~~DslTR~ 264 (439)
T PRK06936 238 FVATSIAEYFRDQGKRVLLLMDSVTRF 264 (439)
T ss_pred HHHHHHHHHHHHcCCCEEEeccchhHH
Confidence 1122444443 489999999999654
No 417
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=93.88 E-value=0.31 Score=53.35 Aligned_cols=74 Identities=26% Similarity=0.235 Sum_probs=46.9
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhc
Q 047163 175 KLNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQNPDHHKIQDKLAFGLGMEFGFNENMFQRASRLCERLKK 254 (658)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 254 (658)
..+.+-++|++|.|||.||+.+++..... | +.+... .+.... ..+.+.....++..-+.
T Consensus 275 ~~~giLl~GpPGtGKT~lAkava~~~~~~--f-----i~v~~~--------~l~sk~------vGesek~ir~~F~~A~~ 333 (494)
T COG0464 275 PPKGVLLYGPPGTGKTLLAKAVALESRSR--F-----ISVKGS--------ELLSKW------VGESEKNIRELFEKARK 333 (494)
T ss_pred CCCeeEEECCCCCCHHHHHHHHHhhCCCe--E-----EEeeCH--------HHhccc------cchHHHHHHHHHHHHHc
Confidence 45588999999999999999999965432 3 222211 111100 12223455555555555
Q ss_pred CCeEEEEEecCCccc
Q 047163 255 EKRLLIILDNIWIEL 269 (658)
Q Consensus 255 ~k~~LlVlDdv~~~~ 269 (658)
...+.|.+|+++...
T Consensus 334 ~~p~iiFiDEiDs~~ 348 (494)
T COG0464 334 LAPSIIFIDEIDSLA 348 (494)
T ss_pred CCCcEEEEEchhhhh
Confidence 688999999997543
No 418
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=93.87 E-value=0.15 Score=44.05 Aligned_cols=115 Identities=14% Similarity=0.297 Sum_probs=57.2
Q ss_pred CCCCCceEEEecCCCCCCccchHHhcCCCCCcEEEccCCCCCCCcc-ccccCCCcceEEccCCCCCCc--hhhhccCCCc
Q 047163 497 QCPNLQLFLFFGKGYGPMQISDLFFEGTKELKDLSLTRIPFSSLPS-SLGSLINLGTLCLEDCPRNDI--AILRQLKKLE 573 (658)
Q Consensus 497 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~L~~~~~~~l--~~~~~l~~L~ 573 (658)
.+++|+.+.+..+ ...++...|..+..|+.+.+.++ +..++. .+..+..|+.+.+.. .+..+ ..+...++|+
T Consensus 10 ~~~~l~~i~~~~~---~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~ 84 (129)
T PF13306_consen 10 NCSNLESITFPNT---IKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLK 84 (129)
T ss_dssp T-TT--EEEETST-----EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTEC
T ss_pred CCCCCCEEEECCC---eeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccccc
Confidence 5567777776532 44566667777878888888774 665543 455666788888865 44444 4566678888
Q ss_pred EEEccCccCCccch-hhcCCCCCcEEcccCcccccccChhhhcCCCCC
Q 047163 574 ILRLRHSYTERLPL-EIGQLTRLRLLDLSNCWRLKVIAPNVISKLSRL 620 (658)
Q Consensus 574 ~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L 620 (658)
.+.+..+ +..++. .+.+. +|+.+.+.. .+..++...+.+.++|
T Consensus 85 ~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~--~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 85 NIDIPSN-ITEIGSSSFSNC-NLKEINIPS--NITKIEENAFKNCTKL 128 (129)
T ss_dssp EEEETTT--BEEHTTTTTT--T--EEE-TT--B-SS----GGG-----
T ss_pred ccccCcc-ccEEchhhhcCC-CceEEEECC--CccEECCccccccccC
Confidence 8888664 556653 45565 888887765 4566666666666555
No 419
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=93.84 E-value=0.07 Score=50.98 Aligned_cols=24 Identities=33% Similarity=0.387 Sum_probs=21.5
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHH
Q 047163 176 LNIIGVYGMGGVGKTTLVKQVAKQ 199 (658)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~ 199 (658)
.+++.|+|+.|.||||+.+.+...
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~~ 52 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVALI 52 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHHH
Confidence 488999999999999999999843
No 420
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.79 E-value=0.017 Score=52.86 Aligned_cols=79 Identities=24% Similarity=0.283 Sum_probs=58.2
Q ss_pred CcceEEccCCCCCCc--hhhhccCCCcEEEccCc-cCCccc-hhhc-CCCCCcEEcccCcccccccChhhhcCCCCCcEE
Q 047163 549 NLGTLCLEDCPRNDI--AILRQLKKLEILRLRHS-YTERLP-LEIG-QLTRLRLLDLSNCWRLKVIAPNVISKLSRLEEL 623 (658)
Q Consensus 549 ~L~~L~L~~~~~~~l--~~~~~l~~L~~L~l~~~-~~~~lp-~~~~-~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L 623 (658)
.++.++-+++.|... ..+..++.++.|.+.+| .+...- +.++ -.++|+.|++++|+.+++..-..+..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 467778888776543 77888888888888887 333221 2233 336899999999988888777778889999988
Q ss_pred Eccc
Q 047163 624 YMGN 627 (658)
Q Consensus 624 ~l~~ 627 (658)
.+.+
T Consensus 182 ~l~~ 185 (221)
T KOG3864|consen 182 HLYD 185 (221)
T ss_pred HhcC
Confidence 8876
No 421
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=93.79 E-value=0.056 Score=46.09 Aligned_cols=24 Identities=38% Similarity=0.592 Sum_probs=20.4
Q ss_pred EEEEcCCCChHHHHHHHHHHHhhh
Q 047163 179 IGVYGMGGVGKTTLVKQVAKQVME 202 (658)
Q Consensus 179 i~I~G~gGiGKTtLa~~v~~~~~~ 202 (658)
|.|+|..|+|||||.+.+.+....
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~~~ 25 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGEFP 25 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS--
T ss_pred EEEECcCCCCHHHHHHHHhcCCCc
Confidence 789999999999999999976643
No 422
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=93.78 E-value=0.37 Score=48.82 Aligned_cols=88 Identities=22% Similarity=0.323 Sum_probs=50.6
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCC-CCHHHHHHHHHHhcCCCC------CCCCCHH------
Q 047163 176 LNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQN-PDHHKIQDKLAFGLGMEF------GFNENMF------ 242 (658)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~-~~~~~~~~~i~~~l~~~~------~~~~~~~------ 242 (658)
-..++|+|..|+|||||++.+...... +..+..-+.+. .+...+.+.....-+... ....+..
T Consensus 69 Gqri~I~G~sG~GKTtLl~~Ia~~~~~----~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~~~ 144 (326)
T cd01136 69 GQRLGIFAGSGVGKSTLLGMIARGTTA----DVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVKAA 144 (326)
T ss_pred CcEEEEECCCCCChHHHHHHHhCCCCC----CEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHHHH
Confidence 347899999999999999998876542 33444455443 344555555544322110 0011111
Q ss_pred HHHHHHHHHH-hcCCeEEEEEecCCc
Q 047163 243 QRASRLCERL-KKEKRLLIILDNIWI 267 (658)
Q Consensus 243 ~~~~~l~~~l-~~~k~~LlVlDdv~~ 267 (658)
..+-.+-+++ ..+|.+|+++||+..
T Consensus 145 ~~a~~~AEyfr~~g~~Vll~~Dsltr 170 (326)
T cd01136 145 YTATAIAEYFRDQGKDVLLLMDSLTR 170 (326)
T ss_pred HHHHHHHHHHHHcCCCeEEEeccchH
Confidence 1122233444 247999999999864
No 423
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=93.77 E-value=0.11 Score=48.47 Aligned_cols=44 Identities=20% Similarity=0.217 Sum_probs=32.1
Q ss_pred cccccchHHHHHHHHHHhccCCccEEEEEcCCCChHHHHHHHHHHH
Q 047163 154 FEAFDSKMEVFQDVMEALKDDKLNIIGVYGMGGVGKTTLVKQVAKQ 199 (658)
Q Consensus 154 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 199 (658)
..+++|.+..+..+.-.... ..-+.++|.+|+|||++|+.+..-
T Consensus 2 f~dI~GQe~aKrAL~iAAaG--~h~lLl~GppGtGKTmlA~~l~~l 45 (206)
T PF01078_consen 2 FSDIVGQEEAKRALEIAAAG--GHHLLLIGPPGTGKTMLARRLPSL 45 (206)
T ss_dssp TCCSSSTHHHHHHHHHHHHC--C--EEEES-CCCTHHHHHHHHHHC
T ss_pred hhhhcCcHHHHHHHHHHHcC--CCCeEEECCCCCCHHHHHHHHHHh
Confidence 45678988887776544433 357899999999999999999854
No 424
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=93.77 E-value=0.047 Score=48.02 Aligned_cols=26 Identities=35% Similarity=0.561 Sum_probs=22.8
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHhhh
Q 047163 177 NIIGVYGMGGVGKTTLVKQVAKQVME 202 (658)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~~ 202 (658)
.+++|+|..|+|||||.+.++.....
T Consensus 12 ~~~~i~G~nGsGKStLl~~l~g~~~~ 37 (137)
T PF00005_consen 12 EIVAIVGPNGSGKSTLLKALAGLLPP 37 (137)
T ss_dssp SEEEEEESTTSSHHHHHHHHTTSSHE
T ss_pred CEEEEEccCCCccccceeeecccccc
Confidence 48999999999999999999876643
No 425
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=93.77 E-value=0.18 Score=47.43 Aligned_cols=25 Identities=36% Similarity=0.577 Sum_probs=22.9
Q ss_pred EEEEEcCCCChHHHHHHHHHHHhhh
Q 047163 178 IIGVYGMGGVGKTTLVKQVAKQVME 202 (658)
Q Consensus 178 vi~I~G~gGiGKTtLa~~v~~~~~~ 202 (658)
+|+|.|+.|+||||+++.+.+....
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~l~~ 26 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAERLEA 26 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 6899999999999999999988753
No 426
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=93.77 E-value=0.55 Score=47.74 Aligned_cols=46 Identities=13% Similarity=0.146 Sum_probs=40.4
Q ss_pred ccccchHHHHHHHHHHhccCCc-cEEEEEcCCCChHHHHHHHHHHHh
Q 047163 155 EAFDSKMEVFQDVMEALKDDKL-NIIGVYGMGGVGKTTLVKQVAKQV 200 (658)
Q Consensus 155 ~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~ 200 (658)
..++|.+..++.+...+..+.+ ....++|+.|+||+++|..+.+..
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~l 50 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGL 50 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 4678999999999999887765 688999999999999999998875
No 427
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=93.74 E-value=0.11 Score=52.12 Aligned_cols=40 Identities=30% Similarity=0.527 Sum_probs=29.4
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCCC
Q 047163 177 NIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQNP 218 (658)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~ 218 (658)
+.|+|+|-||+||||++..++.....+. + .+.-++.....
T Consensus 1 ~~ia~~gKGGVGKTT~a~nLA~~La~~G-~-~VlliD~D~q~ 40 (275)
T TIGR01287 1 RQIAIYGKGGIGKSTTTQNIAAALAEMG-K-KVMIVGCDPKA 40 (275)
T ss_pred CeeEEeCCCcCcHHHHHHHHHHHHHHCC-C-eEEEEeCCCCC
Confidence 4789999999999999999998877533 2 34455554333
No 428
>PRK06620 hypothetical protein; Validated
Probab=93.73 E-value=0.049 Score=52.05 Aligned_cols=24 Identities=25% Similarity=0.152 Sum_probs=21.3
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHh
Q 047163 177 NIIGVYGMGGVGKTTLVKQVAKQV 200 (658)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~ 200 (658)
+.+.|+|++|+|||+|++.+++..
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~ 68 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLS 68 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhcc
Confidence 568999999999999999887665
No 429
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=93.72 E-value=0.2 Score=53.61 Aligned_cols=86 Identities=24% Similarity=0.303 Sum_probs=49.9
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCC-CCCHHHHHHHHHHHHhcC
Q 047163 177 NIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQNPDHHKIQDKLAFGLGMEFGF-NENMFQRASRLCERLKKE 255 (658)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~-~~~~~~~~~~l~~~l~~~ 255 (658)
.++.|.|.+|+|||||+.++....... -..++|++..+. ..++... +..++..... ..-.+.....+...+...
T Consensus 95 svilI~G~pGsGKTTL~lq~a~~~a~~--g~kvlYvs~EEs--~~qi~~r-a~rlg~~~~~l~~~~e~~~~~I~~~i~~~ 169 (454)
T TIGR00416 95 SLILIGGDPGIGKSTLLLQVACQLAKN--QMKVLYVSGEES--LQQIKMR-AIRLGLPEPNLYVLSETNWEQICANIEEE 169 (454)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHhc--CCcEEEEECcCC--HHHHHHH-HHHcCCChHHeEEcCCCCHHHHHHHHHhc
Confidence 589999999999999999998776542 135778776543 3333322 2333322110 000001123444455444
Q ss_pred CeEEEEEecCCc
Q 047163 256 KRLLIILDNIWI 267 (658)
Q Consensus 256 k~~LlVlDdv~~ 267 (658)
+.-++|+|.+..
T Consensus 170 ~~~~vVIDSIq~ 181 (454)
T TIGR00416 170 NPQACVIDSIQT 181 (454)
T ss_pred CCcEEEEecchh
Confidence 566899999863
No 430
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=93.71 E-value=0.049 Score=52.83 Aligned_cols=35 Identities=31% Similarity=0.415 Sum_probs=27.2
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEE
Q 047163 176 LNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAE 213 (658)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~ 213 (658)
-.+++|+|+.|+|||||.+.++.-... -.+.++++
T Consensus 28 G~i~~iiGpNG~GKSTLLk~l~g~l~p---~~G~V~l~ 62 (258)
T COG1120 28 GEITGILGPNGSGKSTLLKCLAGLLKP---KSGEVLLD 62 (258)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCC---CCCEEEEC
Confidence 359999999999999999999986654 23445544
No 431
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=93.67 E-value=0.21 Score=48.98 Aligned_cols=87 Identities=17% Similarity=0.153 Sum_probs=49.9
Q ss_pred cEEEEEcCCCChHHHHH-HHHHHHhhhccCCCE-EEEEEEcCCC-CHHHHHHHHHHhcCCCC------CCCCCHHH----
Q 047163 177 NIIGVYGMGGVGKTTLV-KQVAKQVMEDKLFDK-VVMAEVTQNP-DHHKIQDKLAFGLGMEF------GFNENMFQ---- 243 (658)
Q Consensus 177 ~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~F~~-~~wv~v~~~~-~~~~~~~~i~~~l~~~~------~~~~~~~~---- 243 (658)
..++|.|..|+|||+|| ..+.+.. .-+. ++++-+++.. ...++.+.+...-.... ....+...
T Consensus 70 Qr~~Ifg~~g~GKt~L~l~~i~~~~----~~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~a 145 (274)
T cd01132 70 QRELIIGDRQTGKTAIAIDTIINQK----GKKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQYLA 145 (274)
T ss_pred CEEEeeCCCCCCccHHHHHHHHHhc----CCCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHHHHH
Confidence 47899999999999996 5565543 2343 3677777764 44555565553221110 00111111
Q ss_pred --HHHHHHHHHh-cCCeEEEEEecCCc
Q 047163 244 --RASRLCERLK-KEKRLLIILDNIWI 267 (658)
Q Consensus 244 --~~~~l~~~l~-~~k~~LlVlDdv~~ 267 (658)
.+-.+-+++. .++.+|+++||+..
T Consensus 146 ~~~a~aiAE~fr~~G~~Vlvl~DslTr 172 (274)
T cd01132 146 PYTGCAMGEYFMDNGKHALIIYDDLSK 172 (274)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEcChHH
Confidence 1122333333 47999999999963
No 432
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=93.66 E-value=0.064 Score=48.99 Aligned_cols=24 Identities=46% Similarity=0.625 Sum_probs=20.8
Q ss_pred EEEEcCCCChHHHHHHHHHHHhhh
Q 047163 179 IGVYGMGGVGKTTLVKQVAKQVME 202 (658)
Q Consensus 179 i~I~G~gGiGKTtLa~~v~~~~~~ 202 (658)
|.|.|..|+|||||++.+.+..+.
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~~ 25 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELKK 25 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhhc
Confidence 689999999999999999988753
No 433
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=93.65 E-value=0.056 Score=51.56 Aligned_cols=25 Identities=28% Similarity=0.534 Sum_probs=22.1
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHhh
Q 047163 177 NIIGVYGMGGVGKTTLVKQVAKQVM 201 (658)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (658)
-+|+|+|++|+|||||.+.++.-..
T Consensus 30 EfvsilGpSGcGKSTLLriiAGL~~ 54 (248)
T COG1116 30 EFVAILGPSGCGKSTLLRLIAGLEK 54 (248)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4899999999999999999986554
No 434
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=93.65 E-value=0.061 Score=49.65 Aligned_cols=26 Identities=19% Similarity=0.296 Sum_probs=23.2
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHhhh
Q 047163 177 NIIGVYGMGGVGKTTLVKQVAKQVME 202 (658)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~~ 202 (658)
.+++|+|..|+||||+++.++.....
T Consensus 4 e~i~l~G~sGsGKSTl~~~la~~l~~ 29 (176)
T PRK09825 4 ESYILMGVSGSGKSLIGSKIAALFSA 29 (176)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 47899999999999999999987653
No 435
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=93.64 E-value=0.35 Score=47.18 Aligned_cols=25 Identities=24% Similarity=0.385 Sum_probs=21.5
Q ss_pred EEEEEcCCCChHHHHHHHHHHHhhh
Q 047163 178 IIGVYGMGGVGKTTLVKQVAKQVME 202 (658)
Q Consensus 178 vi~I~G~gGiGKTtLa~~v~~~~~~ 202 (658)
+..|+|++|+|||+||..++-....
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va~ 27 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMAL 27 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHhc
Confidence 5679999999999999999887543
No 436
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=93.64 E-value=0.11 Score=52.38 Aligned_cols=48 Identities=21% Similarity=0.383 Sum_probs=42.0
Q ss_pred ccccchHHHHHHHHHHhc------cCCccEEEEEcCCCChHHHHHHHHHHHhhh
Q 047163 155 EAFDSKMEVFQDVMEALK------DDKLNIIGVYGMGGVGKTTLVKQVAKQVME 202 (658)
Q Consensus 155 ~~~~gr~~~~~~l~~~l~------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 202 (658)
..|+|.++.++++++.+. +..-+|+.++|+-|.||||||..+-+-.+.
T Consensus 61 ~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~le~ 114 (358)
T PF08298_consen 61 DEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGLEE 114 (358)
T ss_pred ccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHhhe
Confidence 468999999999999987 345679999999999999999999988764
No 437
>PHA02244 ATPase-like protein
Probab=93.64 E-value=0.18 Score=51.49 Aligned_cols=36 Identities=19% Similarity=0.314 Sum_probs=26.6
Q ss_pred HHHHHHHhccCCccEEEEEcCCCChHHHHHHHHHHHhh
Q 047163 164 FQDVMEALKDDKLNIIGVYGMGGVGKTTLVKQVAKQVM 201 (658)
Q Consensus 164 ~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (658)
...+..++..+. -|.|+|+.|+|||+||+.++....
T Consensus 109 ~~ri~r~l~~~~--PVLL~GppGtGKTtLA~aLA~~lg 144 (383)
T PHA02244 109 TADIAKIVNANI--PVFLKGGAGSGKNHIAEQIAEALD 144 (383)
T ss_pred HHHHHHHHhcCC--CEEEECCCCCCHHHHHHHHHHHhC
Confidence 344555554332 478899999999999999998754
No 438
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=93.64 E-value=0.14 Score=49.66 Aligned_cols=52 Identities=23% Similarity=0.279 Sum_probs=29.4
Q ss_pred EEEEEcCCCChHHHHHHHHHHHhh-----hccCCCEEEEEEEcCCCCHHHHHHHHHH
Q 047163 178 IIGVYGMGGVGKTTLVKQVAKQVM-----EDKLFDKVVMAEVTQNPDHHKIQDKLAF 229 (658)
Q Consensus 178 vi~I~G~gGiGKTtLa~~v~~~~~-----~~~~F~~~~wv~v~~~~~~~~~~~~i~~ 229 (658)
+..|+|++|.||||++..+..... ....-...+.++...+.....+...+.+
T Consensus 19 ~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp -EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 789999999999977777666651 1122344455555444444445554443
No 439
>PRK04182 cytidylate kinase; Provisional
Probab=93.62 E-value=0.063 Score=49.75 Aligned_cols=24 Identities=38% Similarity=0.546 Sum_probs=22.0
Q ss_pred EEEEEcCCCChHHHHHHHHHHHhh
Q 047163 178 IIGVYGMGGVGKTTLVKQVAKQVM 201 (658)
Q Consensus 178 vi~I~G~gGiGKTtLa~~v~~~~~ 201 (658)
+|.|.|+.|+||||+|+.+.....
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg 25 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 789999999999999999998764
No 440
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=93.59 E-value=0.49 Score=44.87 Aligned_cols=73 Identities=26% Similarity=0.287 Sum_probs=45.7
Q ss_pred CCccEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHh
Q 047163 174 DKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQNPDHHKIQDKLAFGLGMEFGFNENMFQRASRLCERLK 253 (658)
Q Consensus 174 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 253 (658)
+.++=|.++|++|.|||-||+.|+++.... | +.|-.. ...+ +.++... .....+++.-+
T Consensus 187 dpprgvllygppg~gktml~kava~~t~a~--f-----irvvgs----efvq---kylgegp-------rmvrdvfrlak 245 (408)
T KOG0727|consen 187 DPPRGVLLYGPPGTGKTMLAKAVANHTTAA--F-----IRVVGS----EFVQ---KYLGEGP-------RMVRDVFRLAK 245 (408)
T ss_pred CCCcceEEeCCCCCcHHHHHHHHhhccchh--e-----eeeccH----HHHH---HHhccCc-------HHHHHHHHHHh
Confidence 345678899999999999999999887543 3 322111 1111 1222221 23445566556
Q ss_pred cCCeEEEEEecCCc
Q 047163 254 KEKRLLIILDNIWI 267 (658)
Q Consensus 254 ~~k~~LlVlDdv~~ 267 (658)
.+-.-.|.+|.++.
T Consensus 246 enapsiifideida 259 (408)
T KOG0727|consen 246 ENAPSIIFIDEIDA 259 (408)
T ss_pred ccCCcEEEeehhhh
Confidence 56778889999864
No 441
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=93.57 E-value=0.27 Score=51.68 Aligned_cols=88 Identities=23% Similarity=0.361 Sum_probs=49.9
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCC-CCHHHHHHHHHHhcCCCCC------CCCCH-HH-----
Q 047163 177 NIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQN-PDHHKIQDKLAFGLGMEFG------FNENM-FQ----- 243 (658)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~-~~~~~~~~~i~~~l~~~~~------~~~~~-~~----- 243 (658)
..++|.|..|+|||||++.+...... +..+.+.+.+. ....++.++.+..-+.... ...+. ..
T Consensus 141 q~i~I~G~sG~GKTtLl~~I~~~~~~----~~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~a~~ 216 (418)
T TIGR03498 141 QRLGIFAGSGVGKSTLLSMLARNTDA----DVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQAAY 216 (418)
T ss_pred cEEEEECCCCCChHHHHHHHhCCCCC----CEEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHHHHH
Confidence 48999999999999999988865532 22233334333 3344455554433221110 01111 11
Q ss_pred HHHHHHHHHh-cCCeEEEEEecCCcc
Q 047163 244 RASRLCERLK-KEKRLLIILDNIWIE 268 (658)
Q Consensus 244 ~~~~l~~~l~-~~k~~LlVlDdv~~~ 268 (658)
.+-.+-++++ .++++|+++||+...
T Consensus 217 ~a~~iAEyfrd~G~~Vll~~DslTr~ 242 (418)
T TIGR03498 217 TATAIAEYFRDQGKDVLLLMDSVTRF 242 (418)
T ss_pred HHHHHHHHHHHcCCCEEEeccchhHH
Confidence 1223445553 478999999998653
No 442
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=93.57 E-value=0.11 Score=47.46 Aligned_cols=70 Identities=11% Similarity=0.104 Sum_probs=40.0
Q ss_pred ccchHHHHHHHHHHhc--cCCccEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCCCCHHHHHHHHHH
Q 047163 157 FDSKMEVFQDVMEALK--DDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQNPDHHKIQDKLAF 229 (658)
Q Consensus 157 ~~gr~~~~~~l~~~l~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~ 229 (658)
++|....+.++++.+. .....-|.|+|..|+||+.+|+.+++..... -...+-|+++. .+...+..++.-
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~s~r~--~~pfi~vnc~~-~~~~~~e~~LFG 72 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNNSPRK--NGPFISVNCAA-LPEELLESELFG 72 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHCSTTT--TS-EEEEETTT-S-HHHHHHHHHE
T ss_pred CEeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHhhhcc--cCCeEEEehhh-hhcchhhhhhhc
Confidence 3577777777777665 2223467799999999999999999854321 12334444442 233444444443
No 443
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=93.54 E-value=0.059 Score=50.07 Aligned_cols=34 Identities=18% Similarity=0.295 Sum_probs=26.4
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEE
Q 047163 177 NIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAE 213 (658)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~ 213 (658)
.|++|+|++|+|||||.+.+..-... =.+.+|++
T Consensus 29 evv~iiGpSGSGKSTlLRclN~LE~~---~~G~I~i~ 62 (240)
T COG1126 29 EVVVIIGPSGSGKSTLLRCLNGLEEP---DSGSITVD 62 (240)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCcCC---CCceEEEC
Confidence 49999999999999999998755432 23666765
No 444
>PRK14737 gmk guanylate kinase; Provisional
Probab=93.54 E-value=0.063 Score=50.00 Aligned_cols=26 Identities=15% Similarity=0.353 Sum_probs=22.9
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHh
Q 047163 175 KLNIIGVYGMGGVGKTTLVKQVAKQV 200 (658)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 200 (658)
..++|.|+|++|+|||||++.+....
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcC
Confidence 35689999999999999999998754
No 445
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=93.53 E-value=0.19 Score=52.37 Aligned_cols=41 Identities=29% Similarity=0.429 Sum_probs=32.5
Q ss_pred HHHHHHHHHhccCCccEEEEEcCCCChHHHHHHHHHHHhhh
Q 047163 162 EVFQDVMEALKDDKLNIIGVYGMGGVGKTTLVKQVAKQVME 202 (658)
Q Consensus 162 ~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 202 (658)
..++.+++.+.......+.|.|.||.|||+|.+.+.+..+.
T Consensus 8 ~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~~~~~ 48 (364)
T PF05970_consen 8 RVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIIDYLRS 48 (364)
T ss_pred HHHHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHHHhcc
Confidence 34555566665566678999999999999999999988765
No 446
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=93.53 E-value=0.42 Score=49.06 Aligned_cols=45 Identities=18% Similarity=0.270 Sum_probs=35.6
Q ss_pred ccc-hHHHHHHHHHHhccCCcc-EEEEEcCCCChHHHHHHHHHHHhh
Q 047163 157 FDS-KMEVFQDVMEALKDDKLN-IIGVYGMGGVGKTTLVKQVAKQVM 201 (658)
Q Consensus 157 ~~g-r~~~~~~l~~~l~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~ 201 (658)
++| .+..++.+...+..+++. .+.++|+.|+||||+|+.+.+..-
T Consensus 7 i~~~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~ 53 (329)
T PRK08058 7 LTALQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLF 53 (329)
T ss_pred HHhhHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHC
Confidence 456 677777787777766654 558999999999999999988753
No 447
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=93.50 E-value=0.32 Score=47.46 Aligned_cols=25 Identities=28% Similarity=0.458 Sum_probs=22.3
Q ss_pred EEEEEcCCCChHHHHHHHHHHHhhh
Q 047163 178 IIGVYGMGGVGKTTLVKQVAKQVME 202 (658)
Q Consensus 178 vi~I~G~gGiGKTtLa~~v~~~~~~ 202 (658)
+|+|.|.+|+||||+++.+......
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~ 25 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFAR 25 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHh
Confidence 5899999999999999999987753
No 448
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=93.50 E-value=0.21 Score=50.85 Aligned_cols=37 Identities=30% Similarity=0.603 Sum_probs=29.4
Q ss_pred HHHHHhc--cCCccEEEEEcCCCChHHHHHHHHHHHhhh
Q 047163 166 DVMEALK--DDKLNIIGVYGMGGVGKTTLVKQVAKQVME 202 (658)
Q Consensus 166 ~l~~~l~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 202 (658)
.+++.+. .+...+|+|.|.+|+|||||+..+......
T Consensus 44 ~l~~~~~~~~~~~~~igi~G~~GaGKSTl~~~l~~~l~~ 82 (332)
T PRK09435 44 ELLDALLPHTGNALRIGITGVPGVGKSTFIEALGMHLIE 82 (332)
T ss_pred HHHHHHhhcCCCcEEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3444443 456789999999999999999999888764
No 449
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=93.49 E-value=0.12 Score=52.43 Aligned_cols=53 Identities=26% Similarity=0.346 Sum_probs=37.4
Q ss_pred cccccchHHHHH---HHHHHhccCC--ccEEEEEcCCCChHHHHHHHHHHHhhhccCC
Q 047163 154 FEAFDSKMEVFQ---DVMEALKDDK--LNIIGVYGMGGVGKTTLVKQVAKQVMEDKLF 206 (658)
Q Consensus 154 ~~~~~gr~~~~~---~l~~~l~~~~--~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F 206 (658)
..++||..+..+ -+++++..++ -+.|.|.|++|.|||+||..+......+-.|
T Consensus 23 ~~GlVGQ~~AReAagiiv~mIk~~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF 80 (398)
T PF06068_consen 23 ADGLVGQEKAREAAGIIVDMIKEGKIAGRAILIAGPPGTGKTALAMAIAKELGEDVPF 80 (398)
T ss_dssp ETTEES-HHHHHHHHHHHHHHHTT--TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-E
T ss_pred cccccChHHHHHHHHHHHHHHhcccccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCe
Confidence 467899776554 3566666544 4689999999999999999999998766444
No 450
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=93.47 E-value=0.084 Score=53.64 Aligned_cols=28 Identities=39% Similarity=0.503 Sum_probs=25.1
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHhhh
Q 047163 175 KLNIIGVYGMGGVGKTTLVKQVAKQVME 202 (658)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 202 (658)
...+++++|++|+||||++..++.....
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~ 140 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKA 140 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHh
Confidence 4579999999999999999999988764
No 451
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=93.46 E-value=0.071 Score=48.99 Aligned_cols=25 Identities=28% Similarity=0.313 Sum_probs=22.1
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHhh
Q 047163 177 NIIGVYGMGGVGKTTLVKQVAKQVM 201 (658)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (658)
..|.|+|+.|+||||+|+.+.....
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg 27 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALG 27 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 3588999999999999999998764
No 452
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=93.46 E-value=1.7 Score=44.08 Aligned_cols=40 Identities=23% Similarity=0.449 Sum_probs=30.7
Q ss_pred HHHHHHHHHhccCCcc-EEEEEcCCCChHHHHHHHHHHHhh
Q 047163 162 EVFQDVMEALKDDKLN-IIGVYGMGGVGKTTLVKQVAKQVM 201 (658)
Q Consensus 162 ~~~~~l~~~l~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~ 201 (658)
...+.+...+..+.+. -+.++|+.|+||+++|..++...-
T Consensus 11 ~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~Ll 51 (319)
T PRK08769 11 RAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVL 51 (319)
T ss_pred HHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHh
Confidence 3455666666666655 488999999999999999887653
No 453
>PLN02200 adenylate kinase family protein
Probab=93.46 E-value=0.073 Score=51.59 Aligned_cols=26 Identities=27% Similarity=0.261 Sum_probs=22.7
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHh
Q 047163 175 KLNIIGVYGMGGVGKTTLVKQVAKQV 200 (658)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 200 (658)
...+|.|.|++|+||||+|+.+....
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~~~ 67 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVETF 67 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 34688999999999999999998765
No 454
>PRK04196 V-type ATP synthase subunit B; Provisional
Probab=93.45 E-value=0.29 Score=52.12 Aligned_cols=91 Identities=19% Similarity=0.200 Sum_probs=58.1
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHhhhc---cCCCEEEEEEEcCCC-CHHHHHHHHHHhcCCCC-----CC-CCCH-----
Q 047163 177 NIIGVYGMGGVGKTTLVKQVAKQVMED---KLFDKVVMAEVTQNP-DHHKIQDKLAFGLGMEF-----GF-NENM----- 241 (658)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~~~---~~F~~~~wv~v~~~~-~~~~~~~~i~~~l~~~~-----~~-~~~~----- 241 (658)
..++|.|-.|+|||||+.++.+....+ ..+ .++++-+++.. ...++.+.+...-.... .+ ..+.
T Consensus 144 QR~gIfgg~G~GKs~L~~~ia~~~~~d~~~~~~-v~V~~~iGeRgrEv~e~~~~~~~~~~l~rtvvV~atsd~p~~~R~~ 222 (460)
T PRK04196 144 QKLPIFSGSGLPHNELAAQIARQAKVLGEEENF-AVVFAAMGITFEEANFFMEDFEETGALERSVVFLNLADDPAIERIL 222 (460)
T ss_pred CEEEeeCCCCCCccHHHHHHHHhhhhccCCCce-EEEEEEeccccHHHHHHHHHHHhcCCcceEEEEEEcCCCCHHHHHH
Confidence 478999999999999999999887542 111 67788887765 44556666654321110 00 1111
Q ss_pred -HHHHHHHHHHHh--cCCeEEEEEecCCcc
Q 047163 242 -FQRASRLCERLK--KEKRLLIILDNIWIE 268 (658)
Q Consensus 242 -~~~~~~l~~~l~--~~k~~LlVlDdv~~~ 268 (658)
.-.+..+-++++ +++++|+++||+..-
T Consensus 223 a~~~a~tiAEyfr~d~G~~VLli~DslTR~ 252 (460)
T PRK04196 223 TPRMALTAAEYLAFEKGMHVLVILTDMTNY 252 (460)
T ss_pred HHHHHHHHHHHHHHhcCCcEEEEEcChHHH
Confidence 112334566666 579999999998654
No 455
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=93.41 E-value=0.12 Score=46.36 Aligned_cols=34 Identities=26% Similarity=0.498 Sum_probs=26.9
Q ss_pred HHHHHHHhccCCccEEEEEcCCCChHHHHHHHHHHHh
Q 047163 164 FQDVMEALKDDKLNIIGVYGMGGVGKTTLVKQVAKQV 200 (658)
Q Consensus 164 ~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 200 (658)
++.|.+++.. +++.++|..|+|||||...+....
T Consensus 26 ~~~l~~~l~~---k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 26 IEELKELLKG---KTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp HHHHHHHHTT---SEEEEECSTTSSHHHHHHHHHTSS
T ss_pred HHHHHHHhcC---CEEEEECCCCCCHHHHHHHHHhhc
Confidence 4555666533 699999999999999999998654
No 456
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=93.41 E-value=0.32 Score=51.26 Aligned_cols=89 Identities=17% Similarity=0.220 Sum_probs=51.9
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCCC-CHHHHHHHHHHhcCCCC------CCCCCHHH-----
Q 047163 176 LNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQNP-DHHKIQDKLAFGLGMEF------GFNENMFQ----- 243 (658)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~-~~~~~~~~i~~~l~~~~------~~~~~~~~----- 243 (658)
-..++|+|..|+|||||++.+.+... .+..++..+++.. ......+.....-.... ........
T Consensus 155 GqrigI~G~sG~GKSTLL~~I~~~~~----~d~~vi~~iGeRgrEv~efl~~~~~~~~~~rtv~vv~tsd~p~~~r~~a~ 230 (433)
T PRK07594 155 GQRVGIFSAPGVGKSTLLAMLCNAPD----ADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRAL 230 (433)
T ss_pred CCEEEEECCCCCCccHHHHHhcCCCC----CCEEEEEEECCCchHHHHHHHHhhccCCcceEEEEEECCCCCHHHHHHHH
Confidence 34899999999999999999886543 4555666666554 33344444432110000 00111111
Q ss_pred -HHHHHHHHHh-cCCeEEEEEecCCcc
Q 047163 244 -RASRLCERLK-KEKRLLIILDNIWIE 268 (658)
Q Consensus 244 -~~~~l~~~l~-~~k~~LlVlDdv~~~ 268 (658)
.+-.+-++++ .++++|+++||+...
T Consensus 231 ~~a~tiAEyfrd~G~~VLl~~Dsltr~ 257 (433)
T PRK07594 231 FVATTIAEFFRDNGKRVVLLADSLTRY 257 (433)
T ss_pred HHHHHHHHHHHHCCCcEEEEEeCHHHH
Confidence 1223444443 479999999999653
No 457
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=93.40 E-value=0.21 Score=52.49 Aligned_cols=87 Identities=21% Similarity=0.340 Sum_probs=50.7
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCCC-CHHHHHHHHHHhcCCCC------CCCCCHH------H
Q 047163 177 NIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQNP-DHHKIQDKLAFGLGMEF------GFNENMF------Q 243 (658)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~-~~~~~~~~i~~~l~~~~------~~~~~~~------~ 243 (658)
..++|+|..|+|||||++.+..... .+..+...+++.. ....+.+.....-.... ....+.. .
T Consensus 138 q~~~I~G~sG~GKTtLl~~I~~~~~----~~~~vi~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~tsd~~~~~r~~a~~ 213 (411)
T TIGR03496 138 QRMGIFAGSGVGKSTLLGMMARYTE----ADVVVVGLIGERGREVKEFIEDILGEEGLARSVVVAATADESPLMRLRAAF 213 (411)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCC----CCEEEEEEEecChHHHHHHHHHHhhCCCcceEEEEEECCCCCHHHHHHHHH
Confidence 4799999999999999998886543 2344455665543 34445554443311110 0011111 1
Q ss_pred HHHHHHHHHh-cCCeEEEEEecCCc
Q 047163 244 RASRLCERLK-KEKRLLIILDNIWI 267 (658)
Q Consensus 244 ~~~~l~~~l~-~~k~~LlVlDdv~~ 267 (658)
.+-.+-++++ .++++|+++||+..
T Consensus 214 ~a~tiAEyfr~~G~~Vll~~Dsltr 238 (411)
T TIGR03496 214 YATAIAEYFRDQGKDVLLLMDSLTR 238 (411)
T ss_pred HHHHHHHHHHHCCCCEEEEEeChHH
Confidence 1223444442 47899999999864
No 458
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=93.40 E-value=0.068 Score=48.68 Aligned_cols=21 Identities=38% Similarity=0.509 Sum_probs=18.0
Q ss_pred EEEEcCCCChHHHHHHHHHHH
Q 047163 179 IGVYGMGGVGKTTLVKQVAKQ 199 (658)
Q Consensus 179 i~I~G~gGiGKTtLa~~v~~~ 199 (658)
|+|.|..|+|||||++.+...
T Consensus 2 I~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc
Confidence 799999999999999999977
No 459
>PLN02165 adenylate isopentenyltransferase
Probab=93.39 E-value=0.099 Score=52.76 Aligned_cols=29 Identities=24% Similarity=0.369 Sum_probs=24.9
Q ss_pred cCCccEEEEEcCCCChHHHHHHHHHHHhh
Q 047163 173 DDKLNIIGVYGMGGVGKTTLVKQVAKQVM 201 (658)
Q Consensus 173 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (658)
+..-.+|+|+|+.|+||||||..++....
T Consensus 40 ~~~g~iivIiGPTGSGKStLA~~LA~~l~ 68 (334)
T PLN02165 40 NCKDKVVVIMGATGSGKSRLSVDLATRFP 68 (334)
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHHHHcC
Confidence 44556999999999999999999998854
No 460
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=93.37 E-value=0.074 Score=48.81 Aligned_cols=23 Identities=43% Similarity=0.624 Sum_probs=21.4
Q ss_pred EEEEEcCCCChHHHHHHHHHHHh
Q 047163 178 IIGVYGMGGVGKTTLVKQVAKQV 200 (658)
Q Consensus 178 vi~I~G~gGiGKTtLa~~v~~~~ 200 (658)
+|+|.|..|+||||+|+.+.+..
T Consensus 2 iI~i~G~~GSGKstia~~la~~l 24 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKL 24 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 79999999999999999998765
No 461
>PRK05922 type III secretion system ATPase; Validated
Probab=93.37 E-value=0.48 Score=49.88 Aligned_cols=89 Identities=22% Similarity=0.279 Sum_probs=50.5
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCCC-CHHHHHHHHHHhcCCCCC-----C-CCCH-H-----
Q 047163 176 LNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQNP-DHHKIQDKLAFGLGMEFG-----F-NENM-F----- 242 (658)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~-~~~~~~~~i~~~l~~~~~-----~-~~~~-~----- 242 (658)
-..++|+|..|+|||||.+.+..... .+..+.+-+++.. .....+.+.......... + +.+. .
T Consensus 157 GqrigI~G~nG~GKSTLL~~Ia~~~~----~d~gvi~liGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~~a~ 232 (434)
T PRK05922 157 GQRIGVFSEPGSGKSSLLSTIAKGSK----STINVIALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKVIAG 232 (434)
T ss_pred CcEEEEECCCCCChHHHHHHHhccCC----CCceEEEEeCCCCchHHHHHHHHHhhccccceEEEEECCCCCHHHHHHHH
Confidence 34799999999999999999986643 3334444444433 233444444333222110 0 1111 1
Q ss_pred HHHHHHHHHHh-cCCeEEEEEecCCcc
Q 047163 243 QRASRLCERLK-KEKRLLIILDNIWIE 268 (658)
Q Consensus 243 ~~~~~l~~~l~-~~k~~LlVlDdv~~~ 268 (658)
..+-.+-++++ .++++|+++||+...
T Consensus 233 ~~a~tiAEyfrd~G~~VLl~~DslTR~ 259 (434)
T PRK05922 233 RAAMTIAEYFRDQGHRVLFIMDSLSRW 259 (434)
T ss_pred HHHHHHHHHHHHcCCCEEEeccchhHH
Confidence 11223445553 489999999999754
No 462
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=93.35 E-value=0.12 Score=46.74 Aligned_cols=27 Identities=33% Similarity=0.612 Sum_probs=24.0
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHhhhc
Q 047163 177 NIIGVYGMGGVGKTTLVKQVAKQVMED 203 (658)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~~~ 203 (658)
++++|+|..|+|||||+..+......+
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~~l~~~ 28 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIPALSAR 28 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 589999999999999999999887643
No 463
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.35 E-value=0.066 Score=51.15 Aligned_cols=34 Identities=26% Similarity=0.470 Sum_probs=26.5
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEE
Q 047163 177 NIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAE 213 (658)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~ 213 (658)
.+++|+|..|+|||||++.+...... ..+.++++
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~ 60 (210)
T cd03269 27 EIFGLLGPNGAGKTTTIRMILGIILP---DSGEVLFD 60 (210)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEEC
Confidence 48999999999999999999976532 34555543
No 464
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=93.34 E-value=0.15 Score=51.61 Aligned_cols=39 Identities=26% Similarity=0.390 Sum_probs=27.7
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCC
Q 047163 177 NIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQN 217 (658)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~ 217 (658)
+++.+.|-||+||||+|...+-....+. ..+.-++....
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~~A~~G--~rtLlvS~Dpa 40 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALALARRG--KRTLLVSTDPA 40 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTT--S-EEEEESSTT
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHhhCC--CCeeEeecCCC
Confidence 6899999999999999988887765432 23444444433
No 465
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.33 E-value=0.69 Score=45.71 Aligned_cols=89 Identities=20% Similarity=0.206 Sum_probs=48.6
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCCC-CHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHh
Q 047163 175 KLNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQNP-DHHKIQDKLAFGLGMEFGFNENMFQRASRLCERLK 253 (658)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 253 (658)
...+++++|.+|+||||++..+......+. ..+.+++..... ....-++.....++.+.....+..+.. ...+.+.
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~--~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~-~~l~~l~ 150 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKK--KTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMT-RALTYFK 150 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHHcC--CeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHH-HHHHHHH
Confidence 446999999999999999999987764321 234555554221 111112233334443332122333332 3333343
Q ss_pred c-CCeEEEEEecCC
Q 047163 254 K-EKRLLIILDNIW 266 (658)
Q Consensus 254 ~-~k~~LlVlDdv~ 266 (658)
. .+.=++++|..-
T Consensus 151 ~~~~~D~ViIDt~G 164 (270)
T PRK06731 151 EEARVDYILIDTAG 164 (270)
T ss_pred hcCCCCEEEEECCC
Confidence 2 245688899874
No 466
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=93.30 E-value=0.16 Score=50.69 Aligned_cols=42 Identities=29% Similarity=0.517 Sum_probs=31.2
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCCCCH
Q 047163 177 NIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQNPDH 220 (658)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~ 220 (658)
++|+|.|-||+||||++..++....... + .++-|+.....+.
T Consensus 2 ~~iav~~KGGvGKTT~~~nLA~~La~~G-~-kVlliD~Dpq~n~ 43 (270)
T cd02040 2 RQIAIYGKGGIGKSTTTQNLSAALAEMG-K-KVMIVGCDPKADS 43 (270)
T ss_pred cEEEEEeCCcCCHHHHHHHHHHHHHhCC-C-eEEEEEcCCCCCc
Confidence 5788889999999999999998886422 2 4566776655443
No 467
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=93.29 E-value=0.071 Score=49.15 Aligned_cols=25 Identities=48% Similarity=0.749 Sum_probs=22.4
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHhh
Q 047163 177 NIIGVYGMGGVGKTTLVKQVAKQVM 201 (658)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (658)
.+++|+|..|+|||||++.+..-..
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~Gl~~ 50 (177)
T cd03222 26 EVIGIVGPNGTGKTTAVKILAGQLI 50 (177)
T ss_pred CEEEEECCCCChHHHHHHHHHcCCC
Confidence 4899999999999999999987654
No 468
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=93.29 E-value=0.19 Score=50.92 Aligned_cols=47 Identities=17% Similarity=0.253 Sum_probs=35.9
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCCCC-HHHHHHHH
Q 047163 177 NIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQNPD-HHKIQDKL 227 (658)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~-~~~~~~~i 227 (658)
..++|.|..|+|||+|++++.+... -+.++++-+++... ..++++++
T Consensus 158 qr~~I~G~~G~GKT~L~~~Iak~~~----~dvvVyv~iGERg~Ev~e~l~ef 205 (369)
T cd01134 158 GTAAIPGPFGCGKTVIQQSLSKYSN----SDIVIYVGCGERGNEMTEVLEEF 205 (369)
T ss_pred CEEEEECCCCCChHHHHHHHHhCCC----CCEEEEEEeCCChHHHHHHHHHH
Confidence 4899999999999999999988643 45788888887653 34455554
No 469
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.28 E-value=0.23 Score=54.02 Aligned_cols=69 Identities=25% Similarity=0.264 Sum_probs=48.7
Q ss_pred EEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhcCCe
Q 047163 178 IIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQNPDHHKIQDKLAFGLGMEFGFNENMFQRASRLCERLKKEKR 257 (658)
Q Consensus 178 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~ 257 (658)
=|.++|++|.|||-||.++......+ +++|..+ +++. +.+| ..++..+.++.+-+.-|.
T Consensus 703 giLLyGppGcGKT~la~a~a~~~~~~-------fisvKGP----ElL~---KyIG-------aSEq~vR~lF~rA~~a~P 761 (952)
T KOG0735|consen 703 GILLYGPPGCGKTLLASAIASNSNLR-------FISVKGP----ELLS---KYIG-------ASEQNVRDLFERAQSAKP 761 (952)
T ss_pred ceEEECCCCCcHHHHHHHHHhhCCee-------EEEecCH----HHHH---HHhc-------ccHHHHHHHHHHhhccCC
Confidence 37899999999999999998765433 4566443 2222 2222 124566778888777899
Q ss_pred EEEEEecCCc
Q 047163 258 LLIILDNIWI 267 (658)
Q Consensus 258 ~LlVlDdv~~ 267 (658)
|.+.||..++
T Consensus 762 CiLFFDEfdS 771 (952)
T KOG0735|consen 762 CILFFDEFDS 771 (952)
T ss_pred eEEEeccccc
Confidence 9999999874
No 470
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=93.28 E-value=0.082 Score=52.36 Aligned_cols=28 Identities=25% Similarity=0.500 Sum_probs=25.3
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHhhhcc
Q 047163 177 NIIGVYGMGGVGKTTLVKQVAKQVMEDK 204 (658)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~ 204 (658)
++|+|+|.+|+|||||+..+......+.
T Consensus 2 ~~i~i~G~~gSGKTTLi~~Li~~L~~~G 29 (274)
T PRK14493 2 KVLSIVGYKATGKTTLVERLVDRLSGRG 29 (274)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhCC
Confidence 5899999999999999999999987653
No 471
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=93.28 E-value=0.073 Score=48.06 Aligned_cols=26 Identities=31% Similarity=0.360 Sum_probs=22.9
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHhhh
Q 047163 177 NIIGVYGMGGVGKTTLVKQVAKQVME 202 (658)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~~ 202 (658)
+-|.++||.|+||||+.+.+++...-
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~ 28 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNL 28 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCC
Confidence 35889999999999999999988754
No 472
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=93.27 E-value=0.21 Score=49.01 Aligned_cols=28 Identities=32% Similarity=0.389 Sum_probs=24.8
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHHhhhc
Q 047163 176 LNIIGVYGMGGVGKTTLVKQVAKQVMED 203 (658)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 203 (658)
+..++|||++|.|||-+|+.|+....+.
T Consensus 166 Pkg~ll~GppGtGKTlla~~Vaa~mg~n 193 (388)
T KOG0651|consen 166 PKGLLLYGPPGTGKTLLARAVAATMGVN 193 (388)
T ss_pred CceeEEeCCCCCchhHHHHHHHHhcCCc
Confidence 4678999999999999999999887654
No 473
>PRK09099 type III secretion system ATPase; Provisional
Probab=93.26 E-value=0.28 Score=51.81 Aligned_cols=90 Identities=20% Similarity=0.279 Sum_probs=50.9
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCC-CCHHHHHHHHHHhcCCCC------CCCCCHH-----
Q 047163 175 KLNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQN-PDHHKIQDKLAFGLGMEF------GFNENMF----- 242 (658)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~-~~~~~~~~~i~~~l~~~~------~~~~~~~----- 242 (658)
.-..++|.|..|+|||||++.+...... +..+.+-+++. .....+.+.+...-+... ....+..
T Consensus 162 ~Gq~~~I~G~sG~GKTtLl~~ia~~~~~----d~~vi~~iGer~~ev~ef~~~~~~~~~l~rtvvv~~tsd~p~~~r~~a 237 (441)
T PRK09099 162 EGQRMGIFAPAGVGKSTLMGMFARGTQC----DVNVIALIGERGREVREFIELILGEDGMARSVVVCATSDRSSIERAKA 237 (441)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC----CeEEEEEEccChHHHHHHHHHHhhcCCcceEEEEEECCCCCHHHHHHH
Confidence 3458999999999999999999865532 33333344443 344444455543321110 0011111
Q ss_pred -HHHHHHHHHHh-cCCeEEEEEecCCcc
Q 047163 243 -QRASRLCERLK-KEKRLLIILDNIWIE 268 (658)
Q Consensus 243 -~~~~~l~~~l~-~~k~~LlVlDdv~~~ 268 (658)
..+-.+-++++ .++.+|+++||+...
T Consensus 238 ~~~a~tiAEyfrd~G~~VLl~~DslTr~ 265 (441)
T PRK09099 238 AYVATAIAEYFRDRGLRVLLMMDSLTRF 265 (441)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccchhHH
Confidence 11223444443 479999999998653
No 474
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=93.26 E-value=0.25 Score=45.24 Aligned_cols=23 Identities=30% Similarity=0.391 Sum_probs=20.8
Q ss_pred EEEEEcCCCChHHHHHHHHHHHh
Q 047163 178 IIGVYGMGGVGKTTLVKQVAKQV 200 (658)
Q Consensus 178 vi~I~G~gGiGKTtLa~~v~~~~ 200 (658)
++.|.|.+|+||||+|..+....
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~ 25 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQS 25 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHc
Confidence 68999999999999999998764
No 475
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=93.23 E-value=0.18 Score=53.44 Aligned_cols=92 Identities=15% Similarity=0.227 Sum_probs=48.7
Q ss_pred CCccEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCCCCHHHHHHHHHHh------cCC-CCCCCCCH-----
Q 047163 174 DKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQNPDHHKIQDKLAFG------LGM-EFGFNENM----- 241 (658)
Q Consensus 174 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~------l~~-~~~~~~~~----- 241 (658)
..-.+++|+|..|+|||||++.+....... ..++++.--...+..++.+..+.. +.. ........
T Consensus 156 ~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~---~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~~~~~~~r~~~ 232 (438)
T PRK07721 156 GKGQRVGIFAGSGVGKSTLMGMIARNTSAD---LNVIALIGERGREVREFIERDLGPEGLKRSIVVVATSDQPALMRIKG 232 (438)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcccCCC---eEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECCCCCHHHHHHH
Confidence 334589999999999999999988765431 233443222222344333322111 100 00001111
Q ss_pred HHHHHHHHHHHh-cCCeEEEEEecCCcc
Q 047163 242 FQRASRLCERLK-KEKRLLIILDNIWIE 268 (658)
Q Consensus 242 ~~~~~~l~~~l~-~~k~~LlVlDdv~~~ 268 (658)
...+-.+-++++ .++.+|+++||+...
T Consensus 233 ~~~a~~iAEyfr~~g~~Vll~~Dsltr~ 260 (438)
T PRK07721 233 AYTATAIAEYFRDQGLNVMLMMDSVTRV 260 (438)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEeChHHH
Confidence 112223444443 589999999999653
No 476
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=93.23 E-value=0.69 Score=46.07 Aligned_cols=51 Identities=20% Similarity=0.186 Sum_probs=36.2
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCCCCHHHHHHHHHHh
Q 047163 177 NIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQNPDHHKIQDKLAFG 230 (658)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~ 230 (658)
.++.|.|.+|+||||++.++....... +=..++|+++... ..++...+...
T Consensus 31 ~~~~i~g~~G~GKT~l~~~~~~~~~~~-~g~~vl~iS~E~~--~~~~~~r~~~~ 81 (271)
T cd01122 31 ELIILTAGTGVGKTTFLREYALDLITQ-HGVRVGTISLEEP--VVRTARRLLGQ 81 (271)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHHh-cCceEEEEEcccC--HHHHHHHHHHH
Confidence 488999999999999999998776432 1236778877553 45555555443
No 477
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=93.22 E-value=0.84 Score=44.55 Aligned_cols=49 Identities=14% Similarity=0.287 Sum_probs=34.2
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCCCCHHHHHHHHH
Q 047163 177 NIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQNPDHHKIQDKLA 228 (658)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~ 228 (658)
.++.|.|.+|+|||+++.++........ =..++|++... +..++.+.++
T Consensus 14 ~l~lI~G~~G~GKT~~~~~~~~~~~~~~-g~~vly~s~E~--~~~~~~~r~~ 62 (242)
T cd00984 14 DLIIIAARPSMGKTAFALNIAENIAKKQ-GKPVLFFSLEM--SKEQLLQRLL 62 (242)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHHhC-CCceEEEeCCC--CHHHHHHHHH
Confidence 4889999999999999999887765431 13566777654 3444555443
No 478
>PLN02796 D-glycerate 3-kinase
Probab=93.20 E-value=0.11 Score=52.56 Aligned_cols=28 Identities=32% Similarity=0.329 Sum_probs=24.5
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHhhh
Q 047163 175 KLNIIGVYGMGGVGKTTLVKQVAKQVME 202 (658)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 202 (658)
..-+|+|.|..|+|||||++.+......
T Consensus 99 ~pliIGI~G~sGSGKSTLa~~L~~lL~~ 126 (347)
T PLN02796 99 PPLVIGISAPQGCGKTTLVFALVYLFNA 126 (347)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHhcc
Confidence 4568999999999999999999988754
No 479
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=93.16 E-value=0.75 Score=46.00 Aligned_cols=42 Identities=29% Similarity=0.302 Sum_probs=29.9
Q ss_pred CCccEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCCC
Q 047163 174 DKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQNP 218 (658)
Q Consensus 174 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~ 218 (658)
..+.||.++|..|+||||-.-.+++....+ .+ .+.+-.+++|
T Consensus 137 ~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~-g~--~VllaA~DTF 178 (340)
T COG0552 137 KKPFVILFVGVNGVGKTTTIAKLAKYLKQQ-GK--SVLLAAGDTF 178 (340)
T ss_pred CCcEEEEEEecCCCchHhHHHHHHHHHHHC-CC--eEEEEecchH
Confidence 457899999999999998777777776542 23 3344555555
No 480
>PRK15453 phosphoribulokinase; Provisional
Probab=93.15 E-value=0.1 Score=51.25 Aligned_cols=28 Identities=36% Similarity=0.436 Sum_probs=24.1
Q ss_pred CCccEEEEEcCCCChHHHHHHHHHHHhh
Q 047163 174 DKLNIIGVYGMGGVGKTTLVKQVAKQVM 201 (658)
Q Consensus 174 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (658)
....+|+|.|.+|+||||+|+.+.+...
T Consensus 3 ~k~piI~ItG~SGsGKTTva~~l~~if~ 30 (290)
T PRK15453 3 AKHPIIAVTGSSGAGTTTVKRAFEKIFR 30 (290)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3457999999999999999999987654
No 481
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=93.14 E-value=0.12 Score=51.00 Aligned_cols=37 Identities=19% Similarity=0.273 Sum_probs=28.2
Q ss_pred HHHHHhc-cCCccEEEEEcCCCChHHHHHHHHHHHhhh
Q 047163 166 DVMEALK-DDKLNIIGVYGMGGVGKTTLVKQVAKQVME 202 (658)
Q Consensus 166 ~l~~~l~-~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 202 (658)
.++..+. .+...-++|+|..|+|||||.+.+......
T Consensus 100 ~~l~~l~~~~~~~~~~i~g~~g~GKttl~~~l~~~~~~ 137 (270)
T TIGR02858 100 KLLPYLVRNNRVLNTLIISPPQCGKTTLLRDLARILST 137 (270)
T ss_pred HHHHHHHhCCCeeEEEEEcCCCCCHHHHHHHHhCccCC
Confidence 3344443 445578999999999999999999987654
No 482
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.14 E-value=0.077 Score=51.08 Aligned_cols=33 Identities=27% Similarity=0.405 Sum_probs=26.2
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEE
Q 047163 177 NIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMA 212 (658)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv 212 (658)
.+++|+|..|+|||||.+.++..... ..+.+++
T Consensus 27 e~~~i~G~nGsGKSTLl~~i~G~~~~---~~G~i~~ 59 (220)
T cd03265 27 EIFGLLGPNGAGKTTTIKMLTTLLKP---TSGRATV 59 (220)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEE
Confidence 48999999999999999999876432 4455554
No 483
>PRK14738 gmk guanylate kinase; Provisional
Probab=93.13 E-value=0.08 Score=50.34 Aligned_cols=26 Identities=23% Similarity=0.447 Sum_probs=22.4
Q ss_pred CCccEEEEEcCCCChHHHHHHHHHHH
Q 047163 174 DKLNIIGVYGMGGVGKTTLVKQVAKQ 199 (658)
Q Consensus 174 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 199 (658)
...+.|.|+|++|+|||||++.+...
T Consensus 11 ~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 11 AKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 34578999999999999999999754
No 484
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=93.12 E-value=0.075 Score=48.94 Aligned_cols=22 Identities=36% Similarity=0.504 Sum_probs=20.0
Q ss_pred cEEEEEcCCCChHHHHHHHHHH
Q 047163 177 NIIGVYGMGGVGKTTLVKQVAK 198 (658)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~ 198 (658)
.+++|+|+.|+|||||.+.+..
T Consensus 22 ~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 22 VLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred CEEEEECCCCCCHHHHHHHHhh
Confidence 4899999999999999999863
No 485
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=93.11 E-value=0.073 Score=50.86 Aligned_cols=25 Identities=24% Similarity=0.409 Sum_probs=22.3
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHhh
Q 047163 177 NIIGVYGMGGVGKTTLVKQVAKQVM 201 (658)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (658)
.+++|+|..|+|||||++.++....
T Consensus 28 ~~~~l~G~nGsGKSTLl~~l~G~~~ 52 (211)
T cd03225 28 EFVLIVGPNGSGKSTLLRLLNGLLG 52 (211)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4899999999999999999987653
No 486
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=93.11 E-value=0.071 Score=52.44 Aligned_cols=25 Identities=44% Similarity=0.701 Sum_probs=22.0
Q ss_pred EEEEEcCCCChHHHHHHHHHHHhhh
Q 047163 178 IIGVYGMGGVGKTTLVKQVAKQVME 202 (658)
Q Consensus 178 vi~I~G~gGiGKTtLa~~v~~~~~~ 202 (658)
.|.++|++|+||||+|+.+......
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~~ 25 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLSE 25 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 3789999999999999999988753
No 487
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=93.11 E-value=0.073 Score=51.17 Aligned_cols=25 Identities=24% Similarity=0.417 Sum_probs=22.4
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHhh
Q 047163 177 NIIGVYGMGGVGKTTLVKQVAKQVM 201 (658)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (658)
.+++|+|..|+|||||++.++.-..
T Consensus 31 ~~~~l~G~nGsGKSTLl~~i~Gl~~ 55 (218)
T cd03255 31 EFVAIVGPSGSGKSTLLNILGGLDR 55 (218)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCcC
Confidence 4899999999999999999987654
No 488
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=93.10 E-value=0.074 Score=49.86 Aligned_cols=25 Identities=24% Similarity=0.530 Sum_probs=22.2
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHhh
Q 047163 177 NIIGVYGMGGVGKTTLVKQVAKQVM 201 (658)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (658)
.+++|+|..|+|||||++.+.....
T Consensus 19 e~~~i~G~nGsGKSTLl~~i~G~~~ 43 (190)
T TIGR01166 19 EVLALLGANGAGKSTLLLHLNGLLR 43 (190)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4899999999999999999987654
No 489
>PF13479 AAA_24: AAA domain
Probab=93.10 E-value=0.34 Score=46.27 Aligned_cols=19 Identities=47% Similarity=0.651 Sum_probs=17.5
Q ss_pred EEEEEcCCCChHHHHHHHH
Q 047163 178 IIGVYGMGGVGKTTLVKQV 196 (658)
Q Consensus 178 vi~I~G~gGiGKTtLa~~v 196 (658)
.+.|+|.+|+||||+|..+
T Consensus 5 ~~lIyG~~G~GKTt~a~~~ 23 (213)
T PF13479_consen 5 KILIYGPPGSGKTTLAASL 23 (213)
T ss_pred EEEEECCCCCCHHHHHHhC
Confidence 5789999999999999887
No 490
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=93.09 E-value=0.21 Score=52.53 Aligned_cols=89 Identities=24% Similarity=0.313 Sum_probs=50.9
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCC-CCHHHHHHHHHHhcCCCC------CCCCCHH------
Q 047163 176 LNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQN-PDHHKIQDKLAFGLGMEF------GFNENMF------ 242 (658)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~-~~~~~~~~~i~~~l~~~~------~~~~~~~------ 242 (658)
-..++|.|..|+|||||++.++...... ..++. -+.+. ....+..+..+..-+... ....+..
T Consensus 156 Gqri~I~G~sG~GKTtLl~~Ia~~~~~~---~gvI~-~iGerg~ev~e~~~~~l~~~gl~~tvvv~~tsd~s~~~r~ra~ 231 (432)
T PRK06793 156 GQKIGIFAGSGVGKSTLLGMIAKNAKAD---INVIS-LVGERGREVKDFIRKELGEEGMRKSVVVVATSDESHLMQLRAA 231 (432)
T ss_pred CcEEEEECCCCCChHHHHHHHhccCCCC---eEEEE-eCCCCcccHHHHHHHHhhhcccceeEEEEECCCCCHHHHHHHH
Confidence 3588999999999999999998765431 22332 23333 455555555544322111 0011111
Q ss_pred HHHHHHHHHHh-cCCeEEEEEecCCcc
Q 047163 243 QRASRLCERLK-KEKRLLIILDNIWIE 268 (658)
Q Consensus 243 ~~~~~l~~~l~-~~k~~LlVlDdv~~~ 268 (658)
..+..+-++++ .++..|+++||+...
T Consensus 232 ~~a~~iAEyfr~~G~~VLlilDslTr~ 258 (432)
T PRK06793 232 KLATSIAEYFRDQGNNVLLMMDSVTRF 258 (432)
T ss_pred HHHHHHHHHHHHcCCcEEEEecchHHH
Confidence 11222334442 479999999999764
No 491
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.09 E-value=0.077 Score=49.14 Aligned_cols=24 Identities=33% Similarity=0.574 Sum_probs=21.7
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHh
Q 047163 177 NIIGVYGMGGVGKTTLVKQVAKQV 200 (658)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~ 200 (658)
.+++|+|..|.|||||++.+....
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G~~ 50 (178)
T cd03229 27 EIVALLGPSGSGKSTLLRCIAGLE 50 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 489999999999999999998654
No 492
>COG0055 AtpD F0F1-type ATP synthase, beta subunit [Energy production and conversion]
Probab=93.07 E-value=0.26 Score=49.60 Aligned_cols=89 Identities=20% Similarity=0.336 Sum_probs=55.8
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCCC-CHHHHHHHHHHhcC------------CCCCCCCCHHH
Q 047163 177 NIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQNP-DHHKIQDKLAFGLG------------MEFGFNENMFQ 243 (658)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~-~~~~~~~~i~~~l~------------~~~~~~~~~~~ 243 (658)
.-|++.|-+|+|||-+.+++.+.... .|=...+|.-+++.. .-.++..++.+.-- .++.......-
T Consensus 148 gKiGLFGGAGVGKTVl~~ELI~Nia~-~h~g~SVFaGvGERtREGndLy~Em~es~vl~ktalv~gQMNEpPGaR~RVal 226 (468)
T COG0055 148 GKIGLFGGAGVGKTVLIQELINNIAK-EHGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARMRVAL 226 (468)
T ss_pred ceeeeeccCCccceeeHHHHHHHHHH-HcCCeEEEEeccccccchHHHHHHHHhcCCCCceeEEEeecCCCCcceeeehh
Confidence 36899999999999999999998864 344566788887653 45567777655421 11110010000
Q ss_pred HHHHHHHHHh--cCCeEEEEEecCC
Q 047163 244 RASRLCERLK--KEKRLLIILDNIW 266 (658)
Q Consensus 244 ~~~~l~~~l~--~~k~~LlVlDdv~ 266 (658)
..-.+-++++ .++.+|+.+||+.
T Consensus 227 tGlT~AEyfRD~~gqdVLlFIDNIf 251 (468)
T COG0055 227 TGLTMAEYFRDEEGQDVLLFIDNIF 251 (468)
T ss_pred hhhhHHHHhhcccCCeEEEEehhhh
Confidence 1112333443 2588999999996
No 493
>PRK06761 hypothetical protein; Provisional
Probab=93.07 E-value=0.084 Score=52.26 Aligned_cols=26 Identities=27% Similarity=0.450 Sum_probs=23.6
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHhhh
Q 047163 177 NIIGVYGMGGVGKTTLVKQVAKQVME 202 (658)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~~ 202 (658)
++|.|.|++|+||||+++.+++....
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~L~~ 29 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDILSQ 29 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCc
Confidence 58999999999999999999988753
No 494
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=93.06 E-value=0.21 Score=54.26 Aligned_cols=50 Identities=28% Similarity=0.319 Sum_probs=35.8
Q ss_pred cccccchHHH---HHHHHHHhccCC---------ccEEEEEcCCCChHHHHHHHHHHHhhhc
Q 047163 154 FEAFDSKMEV---FQDVMEALKDDK---------LNIIGVYGMGGVGKTTLVKQVAKQVMED 203 (658)
Q Consensus 154 ~~~~~gr~~~---~~~l~~~l~~~~---------~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 203 (658)
..++-|.|+. +.++++.|.+.. ++=|.++|++|.|||.||+.+.....+-
T Consensus 149 F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VP 210 (596)
T COG0465 149 FADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVP 210 (596)
T ss_pred hhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCC
Confidence 3344566554 555666666322 3457899999999999999999888763
No 495
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=93.06 E-value=0.33 Score=48.93 Aligned_cols=47 Identities=23% Similarity=0.277 Sum_probs=33.2
Q ss_pred cccccccchHHHHHHHHHHhccCCccEEEEEcCCCChHHHHHHHHHHHhh
Q 047163 152 KDFEAFDSKMEVFQDVMEALKDDKLNIIGVYGMGGVGKTTLVKQVAKQVM 201 (658)
Q Consensus 152 ~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (658)
.++.+.... +....++.++..+ +.|.|.|.+|+||||+|+.++....
T Consensus 43 ~d~~y~f~~-~~~~~vl~~l~~~--~~ilL~G~pGtGKTtla~~lA~~l~ 89 (327)
T TIGR01650 43 IDPAYLFDK-ATTKAICAGFAYD--RRVMVQGYHGTGKSTHIEQIAARLN 89 (327)
T ss_pred CCCCccCCH-HHHHHHHHHHhcC--CcEEEEeCCCChHHHHHHHHHHHHC
Confidence 333333343 3445566666543 3699999999999999999998875
No 496
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=93.05 E-value=0.37 Score=50.95 Aligned_cols=89 Identities=17% Similarity=0.307 Sum_probs=51.2
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCCC-CHHHHHHHHHHhcCCCC-------CCCCCHHH----
Q 047163 176 LNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQNP-DHHKIQDKLAFGLGMEF-------GFNENMFQ---- 243 (658)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~-~~~~~~~~i~~~l~~~~-------~~~~~~~~---- 243 (658)
-..++|+|..|+|||||++.+..... .+.++...+.... ....+.+.+...-+... ..+.....
T Consensus 168 GqrigI~G~sG~GKSTLl~~I~g~~~----~dv~V~g~Ig~rg~ev~~~~~~~~~~~~l~rsvvv~atsd~~p~~r~~a~ 243 (451)
T PRK05688 168 GQRLGLFAGTGVGKSVLLGMMTRFTE----ADIIVVGLIGERGREVKEFIEHILGEEGLKRSVVVASPADDAPLMRLRAA 243 (451)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC----CCEEEEEEeCcCcHhHHHHHHHHhhcCCccEEEEEEECCCCCHHHHHHHH
Confidence 34799999999999999999876432 3444444454443 34455555543322111 00111111
Q ss_pred -HHHHHHHHHh-cCCeEEEEEecCCcc
Q 047163 244 -RASRLCERLK-KEKRLLIILDNIWIE 268 (658)
Q Consensus 244 -~~~~l~~~l~-~~k~~LlVlDdv~~~ 268 (658)
.+..+-++++ .++++|+++||+...
T Consensus 244 ~~a~aiAEyfrd~G~~VLl~~DslTR~ 270 (451)
T PRK05688 244 MYCTRIAEYFRDKGKNVLLLMDSLTRF 270 (451)
T ss_pred HHHHHHHHHHHHCCCCEEEEecchhHH
Confidence 1223444443 489999999999654
No 497
>PRK14532 adenylate kinase; Provisional
Probab=93.05 E-value=0.078 Score=49.64 Aligned_cols=22 Identities=23% Similarity=0.389 Sum_probs=20.0
Q ss_pred EEEEcCCCChHHHHHHHHHHHh
Q 047163 179 IGVYGMGGVGKTTLVKQVAKQV 200 (658)
Q Consensus 179 i~I~G~gGiGKTtLa~~v~~~~ 200 (658)
|.|.|++|+||||+|+.+....
T Consensus 3 i~~~G~pGsGKsT~a~~la~~~ 24 (188)
T PRK14532 3 LILFGPPAAGKGTQAKRLVEER 24 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7889999999999999998655
No 498
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=93.04 E-value=0.082 Score=49.62 Aligned_cols=23 Identities=43% Similarity=0.593 Sum_probs=20.9
Q ss_pred ccEEEEEcCCCChHHHHHHHHHH
Q 047163 176 LNIIGVYGMGGVGKTTLVKQVAK 198 (658)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~ 198 (658)
..+|+|+|+.|+||||+|+.+.+
T Consensus 2 ~~iIglTG~igsGKStva~~~~~ 24 (201)
T COG0237 2 MLIIGLTGGIGSGKSTVAKILAE 24 (201)
T ss_pred ceEEEEecCCCCCHHHHHHHHHH
Confidence 35899999999999999999876
No 499
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=93.03 E-value=0.093 Score=46.85 Aligned_cols=26 Identities=31% Similarity=0.643 Sum_probs=22.4
Q ss_pred EEEEEcCCCChHHHHHHHHHHHhhhc
Q 047163 178 IIGVYGMGGVGKTTLVKQVAKQVMED 203 (658)
Q Consensus 178 vi~I~G~gGiGKTtLa~~v~~~~~~~ 203 (658)
++++.|.+|+||||++..+.......
T Consensus 1 ~i~~~G~~GsGKTt~~~~l~~~~~~~ 26 (148)
T cd03114 1 VIGITGVPGAGKSTLIDALITALRAR 26 (148)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 47899999999999999998877543
No 500
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=93.03 E-value=0.1 Score=42.43 Aligned_cols=25 Identities=48% Similarity=0.696 Sum_probs=22.3
Q ss_pred EEEEEcCCCChHHHHHHHHHHHhhh
Q 047163 178 IIGVYGMGGVGKTTLVKQVAKQVME 202 (658)
Q Consensus 178 vi~I~G~gGiGKTtLa~~v~~~~~~ 202 (658)
++.+.|.+|+||||++..+......
T Consensus 1 ~~~~~g~~G~Gktt~~~~l~~~l~~ 25 (99)
T cd01983 1 VIVVTGKGGVGKTTLAANLAAALAK 25 (99)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4788999999999999999998864
Done!