Query 047163
Match_columns 658
No_of_seqs 339 out of 3292
Neff 9.8
Searched_HMMs 29240
Date Mon Mar 25 14:25:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047163.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047163hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 1.1E-39 3.6E-44 358.3 12.5 282 158-457 131-472 (549)
2 3sfz_A APAF-1, apoptotic pepti 100.0 2.3E-34 7.7E-39 349.1 22.8 293 149-456 118-452 (1249)
3 1vt4_I APAF-1 related killer D 100.0 3E-33 1E-37 310.4 21.6 264 157-449 130-436 (1221)
4 1z6t_A APAF-1, apoptotic prote 100.0 3.7E-30 1.3E-34 286.7 23.1 289 151-454 120-450 (591)
5 4fcg_A Uncharacterized protein 99.7 7.1E-18 2.4E-22 172.7 14.4 172 478-658 105-288 (328)
6 4fcg_A Uncharacterized protein 99.7 1.8E-17 6.3E-22 169.6 15.7 173 478-657 128-311 (328)
7 2o6q_A Variable lymphocyte rec 99.7 8.3E-17 2.8E-21 160.1 17.7 173 478-658 38-216 (270)
8 3m19_A Variable lymphocyte rec 99.7 9.5E-17 3.3E-21 157.8 16.9 172 478-658 15-190 (251)
9 3rfs_A Internalin B, repeat mo 99.7 1.5E-16 5E-21 158.5 17.2 171 478-658 42-216 (272)
10 1ozn_A Reticulon 4 receptor; N 99.7 1.2E-16 4.1E-21 160.4 15.5 174 478-658 57-236 (285)
11 1ozn_A Reticulon 4 receptor; N 99.7 2.7E-16 9.1E-21 157.8 15.9 173 478-658 33-212 (285)
12 2o6q_A Variable lymphocyte rec 99.7 4.9E-16 1.7E-20 154.5 17.1 172 478-658 17-192 (270)
13 1p9a_G Platelet glycoprotein I 99.7 3.5E-16 1.2E-20 157.1 15.6 170 478-658 32-206 (290)
14 1h6u_A Internalin H; cell adhe 99.7 6.5E-16 2.2E-20 156.7 17.6 164 478-657 64-227 (308)
15 1h6t_A Internalin B; cell adhe 99.7 7.8E-16 2.7E-20 154.7 15.5 164 478-657 47-210 (291)
16 1p9a_G Platelet glycoprotein I 99.7 8.3E-16 2.8E-20 154.3 15.0 171 478-658 11-183 (290)
17 1h6u_A Internalin H; cell adhe 99.6 1.5E-15 5.1E-20 154.0 15.8 165 478-658 42-206 (308)
18 3zyi_A Leucine-rich repeat-con 99.6 1.1E-15 3.6E-20 164.1 15.1 108 544-657 192-300 (452)
19 3zyi_A Leucine-rich repeat-con 99.6 1.1E-15 3.6E-20 164.1 14.7 172 478-658 100-277 (452)
20 1ogq_A PGIP-2, polygalacturona 99.6 6.9E-16 2.4E-20 156.9 11.9 171 478-657 51-231 (313)
21 3zyj_A Leucine-rich repeat-con 99.6 1.6E-15 5.6E-20 162.0 14.7 173 478-658 113-290 (440)
22 3zyj_A Leucine-rich repeat-con 99.6 1.5E-15 5.1E-20 162.4 14.1 172 478-658 89-266 (440)
23 1m9s_A Internalin B; cell inva 99.6 2.4E-15 8.2E-20 165.8 15.9 164 478-657 44-207 (605)
24 3rfs_A Internalin B, repeat mo 99.6 3.7E-15 1.3E-19 148.3 15.0 149 478-629 64-216 (272)
25 2z62_A TOLL-like receptor 4, v 99.6 2.5E-15 8.4E-20 150.0 13.6 173 478-658 29-235 (276)
26 2z66_A Variable lymphocyte rec 99.6 9E-16 3.1E-20 155.7 10.5 175 478-658 29-234 (306)
27 2xwt_C Thyrotropin receptor; s 99.6 1.2E-15 4.2E-20 148.7 10.8 173 478-657 32-215 (239)
28 4fmz_A Internalin; leucine ric 99.6 1E-14 3.5E-19 150.7 17.6 167 478-658 178-344 (347)
29 2z66_A Variable lymphocyte rec 99.6 1.5E-15 5.2E-20 154.0 10.9 173 478-658 79-259 (306)
30 1ogq_A PGIP-2, polygalacturona 99.6 1.7E-15 5.8E-20 154.0 11.0 170 478-657 102-278 (313)
31 2id5_A Lingo-1, leucine rich r 99.6 5.7E-15 2E-19 159.7 13.1 172 478-657 33-210 (477)
32 3rgz_A Protein brassinosteroid 99.6 1.1E-14 3.7E-19 166.7 16.0 84 569-658 631-715 (768)
33 2o6s_A Variable lymphocyte rec 99.6 2.3E-14 7.8E-19 136.4 15.5 164 481-648 11-190 (208)
34 3e6j_A Variable lymphocyte rec 99.6 2.2E-14 7.4E-19 138.7 15.5 147 479-629 21-170 (229)
35 1xku_A Decorin; proteoglycan, 99.6 2.2E-14 7.6E-19 147.1 16.3 80 571-657 193-273 (330)
36 1xku_A Decorin; proteoglycan, 99.6 3.1E-14 1E-18 146.0 16.9 172 478-658 122-304 (330)
37 1xeu_A Internalin C; cellular 99.6 3.3E-15 1.1E-19 147.7 9.1 142 478-629 42-183 (263)
38 3m19_A Variable lymphocyte rec 99.6 2.8E-14 9.5E-19 140.1 15.7 149 478-629 36-190 (251)
39 2z80_A TOLL-like receptor 2, v 99.6 2.4E-15 8.2E-20 155.9 8.3 173 478-658 53-233 (353)
40 3oja_B Anopheles plasmodium-re 99.6 1.6E-14 5.6E-19 160.4 15.6 171 478-658 100-335 (597)
41 2z80_A TOLL-like receptor 2, v 99.6 4.7E-15 1.6E-19 153.7 10.3 170 481-658 35-209 (353)
42 2v9t_B SLIT homolog 2 protein 99.6 1.4E-14 4.7E-19 139.1 12.3 146 480-629 14-163 (220)
43 3o6n_A APL1; leucine-rich repe 99.6 1.5E-14 5.1E-19 152.0 13.6 107 478-586 70-181 (390)
44 3o6n_A APL1; leucine-rich repe 99.6 2.8E-14 9.5E-19 150.0 15.5 171 478-658 94-329 (390)
45 2xwt_C Thyrotropin receptor; s 99.6 1.4E-14 4.9E-19 141.1 12.4 169 478-657 56-236 (239)
46 2ft3_A Biglycan; proteoglycan, 99.6 2.7E-14 9.1E-19 146.6 14.8 127 525-658 123-275 (332)
47 2v70_A SLIT-2, SLIT homolog 2 99.6 2E-14 6.8E-19 138.0 13.0 146 480-629 14-164 (220)
48 1h6t_A Internalin B; cell adhe 99.6 1.8E-14 6.3E-19 144.6 13.2 162 481-658 28-189 (291)
49 4ezg_A Putative uncharacterize 99.6 2.1E-14 7.2E-19 135.4 12.6 143 478-628 45-191 (197)
50 2v9t_B SLIT homolog 2 protein 99.6 3E-14 1E-18 136.7 13.9 124 478-603 33-162 (220)
51 4ezg_A Putative uncharacterize 99.6 3.3E-14 1.1E-18 134.0 13.8 149 496-658 41-192 (197)
52 4fmz_A Internalin; leucine ric 99.6 5.4E-14 1.8E-18 145.3 16.6 167 478-658 156-322 (347)
53 2z62_A TOLL-like receptor 4, v 99.5 2.8E-14 9.5E-19 142.3 13.7 167 482-657 12-187 (276)
54 2xot_A Amphoterin-induced prot 99.5 2E-14 6.7E-19 149.3 13.1 170 480-658 21-200 (361)
55 3oja_B Anopheles plasmodium-re 99.5 1.9E-14 6.6E-19 159.8 13.5 107 478-586 76-187 (597)
56 2ft3_A Biglycan; proteoglycan, 99.5 3.6E-14 1.2E-18 145.6 14.2 169 478-658 103-305 (332)
57 3v47_A TOLL-like receptor 5B a 99.5 3.1E-14 1E-18 153.0 13.6 133 478-612 31-172 (455)
58 2v70_A SLIT-2, SLIT homolog 2 99.5 5.5E-14 1.9E-18 134.9 13.9 145 502-657 14-163 (220)
59 2id5_A Lingo-1, leucine rich r 99.5 3.3E-14 1.1E-18 153.6 13.3 170 480-658 14-187 (477)
60 3rgz_A Protein brassinosteroid 99.5 8.5E-14 2.9E-18 159.3 17.1 173 478-658 443-691 (768)
61 1wwl_A Monocyte differentiatio 99.5 1.8E-14 6E-19 146.5 10.0 168 478-658 122-307 (312)
62 4eco_A Uncharacterized protein 99.5 6.4E-14 2.2E-18 156.6 15.2 176 479-658 379-577 (636)
63 3e6j_A Variable lymphocyte rec 99.5 6.6E-14 2.3E-18 135.3 13.3 146 501-658 21-170 (229)
64 3vq2_A TLR4, TOLL-like recepto 99.5 1.7E-14 5.8E-19 160.9 10.3 171 478-657 33-214 (606)
65 1o6v_A Internalin A; bacterial 99.5 1.4E-13 4.8E-18 148.2 16.8 164 478-657 69-253 (466)
66 1m9s_A Internalin B; cell inva 99.5 3.9E-14 1.4E-18 156.1 12.4 164 479-658 23-186 (605)
67 1o6v_A Internalin A; bacterial 99.5 1.5E-13 5E-18 148.0 16.7 164 478-657 222-385 (466)
68 3vq2_A TLR4, TOLL-like recepto 99.5 4.7E-14 1.6E-18 157.4 13.1 170 479-658 13-192 (606)
69 3v47_A TOLL-like receptor 5B a 99.5 6.4E-14 2.2E-18 150.5 13.3 87 566-658 295-382 (455)
70 4ecn_A Leucine-rich repeat pro 99.5 3.6E-14 1.2E-18 161.9 11.6 169 478-657 449-654 (876)
71 2ell_A Acidic leucine-rich nuc 99.5 4.9E-14 1.7E-18 129.1 10.3 129 498-629 23-158 (168)
72 1wwl_A Monocyte differentiatio 99.5 1E-14 3.6E-19 148.2 6.3 169 478-658 96-285 (312)
73 1xeu_A Internalin C; cellular 99.5 1.7E-13 5.8E-18 135.3 14.8 163 478-657 20-182 (263)
74 4ecn_A Leucine-rich repeat pro 99.5 1.9E-13 6.4E-18 156.1 17.0 178 479-658 621-817 (876)
75 4glp_A Monocyte differentiatio 99.5 3.7E-14 1.3E-18 144.0 9.9 168 478-658 118-305 (310)
76 3o53_A Protein LRIM1, AGAP0063 99.5 8.7E-15 3E-19 149.1 5.1 163 478-657 81-247 (317)
77 1ziw_A TOLL-like receptor 3; i 99.5 1.2E-13 4E-18 156.4 14.9 171 478-656 26-204 (680)
78 2o6s_A Variable lymphocyte rec 99.5 2.4E-13 8.2E-18 129.3 14.1 146 502-658 10-159 (208)
79 2je0_A Acidic leucine-rich nuc 99.5 6.1E-14 2.1E-18 125.7 9.3 127 524-656 16-149 (149)
80 2z81_A CD282 antigen, TOLL-lik 99.5 3.8E-14 1.3E-18 156.1 9.7 172 478-658 27-207 (549)
81 2z63_A TOLL-like receptor 4, v 99.5 4.6E-14 1.6E-18 156.2 10.2 171 478-657 29-210 (570)
82 2z81_A CD282 antigen, TOLL-lik 99.5 3.6E-14 1.2E-18 156.3 9.1 172 478-657 51-233 (549)
83 3bz5_A Internalin-J, INLJ; leu 99.5 3.2E-13 1.1E-17 144.4 16.1 158 478-658 65-223 (457)
84 4eco_A Uncharacterized protein 99.5 2.8E-13 9.7E-18 151.4 16.2 170 478-658 403-598 (636)
85 3oja_A Leucine-rich immune mol 99.5 6.3E-14 2.2E-18 151.3 10.5 164 478-658 81-248 (487)
86 3j0a_A TOLL-like receptor 5; m 99.5 1E-13 3.5E-18 160.3 12.7 173 478-657 25-214 (844)
87 4glp_A Monocyte differentiatio 99.5 1.3E-13 4.6E-18 139.8 12.0 172 478-658 92-283 (310)
88 2z7x_B TOLL-like receptor 1, v 99.5 1.3E-13 4.5E-18 150.7 12.8 142 480-629 3-149 (520)
89 4b8c_D Glucose-repressible alc 99.5 2.4E-14 8.3E-19 161.8 7.0 160 478-644 174-337 (727)
90 1ziw_A TOLL-like receptor 3; i 99.5 2.3E-13 8E-18 153.9 15.2 175 478-658 431-620 (680)
91 3o53_A Protein LRIM1, AGAP0063 99.5 8.1E-14 2.8E-18 141.9 10.1 168 478-655 100-270 (317)
92 3t6q_A CD180 antigen; protein- 99.5 1.8E-13 6.3E-18 152.5 13.7 173 478-658 377-558 (606)
93 4g8a_A TOLL-like receptor 4; l 99.5 1.9E-13 6.5E-18 153.2 13.9 153 488-649 42-199 (635)
94 3t6q_A CD180 antigen; protein- 99.5 2.8E-13 9.4E-18 151.1 15.0 175 478-658 279-487 (606)
95 3cvr_A Invasion plasmid antige 99.5 3.2E-13 1.1E-17 147.2 14.8 154 478-658 81-241 (571)
96 3j0a_A TOLL-like receptor 5; m 99.5 2.7E-13 9.2E-18 156.8 14.2 169 480-658 7-185 (844)
97 3oja_A Leucine-rich immune mol 99.5 4.9E-14 1.7E-18 152.2 7.0 167 478-654 100-269 (487)
98 2z63_A TOLL-like receptor 4, v 99.5 3.3E-13 1.1E-17 149.3 13.8 170 480-658 10-188 (570)
99 1w8a_A SLIT protein; signaling 99.4 2.5E-13 8.7E-18 127.3 10.8 122 502-629 11-137 (192)
100 1a9n_A U2A', U2A'; complex (nu 99.4 2.4E-13 8.2E-18 125.5 9.8 132 493-629 13-151 (176)
101 2xot_A Amphoterin-induced prot 99.4 3.3E-13 1.1E-17 140.0 11.2 149 478-629 40-200 (361)
102 2z7x_B TOLL-like receptor 1, v 99.4 7.1E-13 2.4E-17 144.9 14.1 169 478-658 303-479 (520)
103 2ast_B S-phase kinase-associat 99.4 1.1E-13 3.7E-18 142.2 6.8 174 478-657 94-282 (336)
104 2ell_A Acidic leucine-rich nuc 99.4 5.6E-13 1.9E-17 122.1 10.8 127 525-657 24-157 (168)
105 3bz5_A Internalin-J, INLJ; leu 99.4 1.9E-12 6.4E-17 138.5 16.3 157 478-657 86-243 (457)
106 2ast_B S-phase kinase-associat 99.4 1.5E-13 5.2E-18 141.2 7.3 174 478-657 71-257 (336)
107 3a79_B TLR6, VLRB.59, TOLL-lik 99.4 6.5E-13 2.2E-17 146.6 12.5 144 478-629 32-180 (562)
108 2je0_A Acidic leucine-rich nuc 99.4 5E-13 1.7E-17 119.7 9.4 125 499-626 17-148 (149)
109 2wfh_A SLIT homolog 2 protein 99.4 1.4E-12 4.6E-17 122.3 12.6 122 502-629 13-137 (193)
110 3cvr_A Invasion plasmid antige 99.4 1.9E-12 6.4E-17 141.1 15.0 152 478-658 60-218 (571)
111 3g06_A SSPH2 (leucine-rich rep 99.4 2.5E-12 8.7E-17 141.8 16.2 75 570-658 221-295 (622)
112 3a79_B TLR6, VLRB.59, TOLL-lik 99.4 3E-12 1E-16 141.2 15.6 169 478-658 332-508 (562)
113 1a9n_A U2A', U2A'; complex (nu 99.4 5.2E-13 1.8E-17 123.3 7.5 127 523-657 17-150 (176)
114 4b8c_D Glucose-repressible alc 99.4 1.9E-13 6.7E-18 154.4 5.0 127 484-614 208-336 (727)
115 2wfh_A SLIT homolog 2 protein 99.4 3.9E-12 1.3E-16 119.1 12.2 123 480-607 13-139 (193)
116 2ca6_A RAN GTPase-activating p 99.3 3.5E-13 1.2E-17 141.3 5.0 174 478-658 95-314 (386)
117 3g06_A SSPH2 (leucine-rich rep 99.3 7.3E-12 2.5E-16 138.2 15.7 119 478-610 62-197 (622)
118 2ca6_A RAN GTPase-activating p 99.3 5.4E-13 1.8E-17 139.9 5.9 173 478-658 61-285 (386)
119 4g8a_A TOLL-like receptor 4; l 99.3 3.2E-12 1.1E-16 143.1 11.8 174 478-658 398-578 (635)
120 2o6r_A Variable lymphocyte rec 99.3 8.3E-12 2.8E-16 115.3 12.2 123 501-629 9-135 (177)
121 1jl5_A Outer protein YOPM; leu 99.3 1.4E-11 4.8E-16 131.6 15.2 135 478-627 112-246 (454)
122 1w8a_A SLIT protein; signaling 99.3 6E-12 2E-16 117.8 10.9 127 479-609 10-141 (192)
123 1ds9_A Outer arm dynein; leuci 99.3 1.5E-13 5.2E-18 129.6 -0.2 123 497-624 46-180 (198)
124 1jl5_A Outer protein YOPM; leu 99.3 1.4E-11 4.8E-16 131.6 14.5 157 478-658 92-248 (454)
125 2qen_A Walker-type ATPase; unk 99.3 1E-10 3.5E-15 120.6 19.9 261 152-450 9-349 (350)
126 1dce_A Protein (RAB geranylger 99.3 1.3E-11 4.3E-16 135.3 12.8 106 501-611 443-550 (567)
127 4ay9_X Follicle-stimulating ho 99.3 9.4E-12 3.2E-16 128.4 10.8 150 478-628 31-212 (350)
128 1dce_A Protein (RAB geranylger 99.3 1.5E-11 5E-16 134.7 12.5 121 526-654 442-567 (567)
129 3goz_A Leucine-rich repeat-con 99.3 8.3E-12 2.8E-16 129.5 8.9 148 478-628 23-206 (362)
130 2o6r_A Variable lymphocyte rec 99.2 7.2E-11 2.5E-15 108.9 13.0 129 479-611 9-141 (177)
131 1ds9_A Outer arm dynein; leuci 99.2 8.5E-13 2.9E-17 124.4 -1.1 145 500-653 24-180 (198)
132 1z7x_W Ribonuclease inhibitor; 99.2 2.6E-12 9E-17 138.1 2.5 175 478-658 200-409 (461)
133 3qfl_A MLA10; coiled-coil, (CC 99.2 5.8E-11 2E-15 99.6 9.4 64 32-96 17-81 (115)
134 1w5s_A Origin recognition comp 99.2 5.8E-10 2E-14 117.8 18.3 274 155-445 22-387 (412)
135 2fna_A Conserved hypothetical 99.2 8.8E-10 3E-14 113.8 18.5 262 152-449 10-356 (357)
136 1z7x_W Ribonuclease inhibitor; 99.1 1.5E-11 5E-16 132.2 4.6 35 526-560 86-125 (461)
137 3g39_A Variable lymphocyte rec 99.1 1.6E-10 5.6E-15 105.6 10.5 79 525-603 30-112 (170)
138 2r9u_A Variable lymphocyte rec 99.1 1.8E-10 6E-15 105.8 10.7 104 502-611 15-122 (174)
139 3goz_A Leucine-rich repeat-con 99.1 6E-11 2.1E-15 123.0 8.2 169 482-658 3-207 (362)
140 4ay9_X Follicle-stimulating ho 99.1 1.4E-10 4.7E-15 119.7 10.1 168 478-657 55-256 (350)
141 3g39_A Variable lymphocyte rec 99.0 8.4E-10 2.9E-14 100.8 9.3 101 526-629 10-113 (170)
142 2r9u_A Variable lymphocyte rec 99.0 1.3E-09 4.3E-14 100.0 9.5 100 527-629 14-116 (174)
143 2v1u_A Cell division control p 98.9 1.3E-07 4.4E-12 98.6 21.8 114 155-268 19-142 (387)
144 3un9_A NLR family member X1; l 98.8 1.1E-09 3.6E-14 113.5 2.8 162 478-646 73-262 (372)
145 3sb4_A Hypothetical leucine ri 98.8 7.8E-09 2.7E-13 105.5 8.7 38 498-538 100-137 (329)
146 2ifg_A High affinity nerve gro 98.8 1.2E-08 4.1E-13 104.9 9.9 90 515-607 23-116 (347)
147 3sb4_A Hypothetical leucine ri 98.7 2.1E-08 7E-13 102.3 8.1 135 515-658 83-308 (329)
148 3ogk_B Coronatine-insensitive 98.7 7.2E-09 2.5E-13 114.9 5.0 148 478-626 165-326 (592)
149 3ogk_B Coronatine-insensitive 98.7 5.4E-09 1.8E-13 115.9 3.4 126 523-655 162-326 (592)
150 2ifg_A High affinity nerve gro 98.7 3.2E-08 1.1E-12 101.7 9.0 99 528-629 11-114 (347)
151 3un9_A NLR family member X1; l 98.6 4.6E-09 1.6E-13 108.7 1.2 136 478-614 102-259 (372)
152 2qby_A CDC6 homolog 1, cell di 98.6 1.2E-07 4.2E-12 98.7 11.2 115 154-268 19-140 (386)
153 2qby_B CDC6 homolog 3, cell di 98.6 1.7E-07 5.6E-12 97.8 11.4 113 155-268 20-145 (384)
154 2p1m_B Transport inhibitor res 98.6 6.5E-09 2.2E-13 115.3 0.5 122 478-599 106-241 (594)
155 2p1m_B Transport inhibitor res 98.6 2.1E-08 7.2E-13 111.2 4.2 130 497-628 103-245 (594)
156 1njg_A DNA polymerase III subu 98.5 4E-07 1.4E-11 88.0 11.9 52 151-202 19-71 (250)
157 2ra8_A Uncharacterized protein 98.5 1.8E-07 6.1E-12 95.9 8.1 55 521-577 168-226 (362)
158 1fnn_A CDC6P, cell division co 98.5 1.2E-06 4E-11 91.4 14.5 113 155-268 17-137 (389)
159 3te6_A Regulatory protein SIR3 98.5 8.5E-07 2.9E-11 88.4 12.5 113 156-268 21-144 (318)
160 4fdw_A Leucine rich hypothetic 98.5 5.7E-07 2E-11 93.9 11.6 166 478-657 181-355 (401)
161 4fdw_A Leucine rich hypothetic 98.3 2.2E-06 7.6E-11 89.4 12.3 141 478-627 136-280 (401)
162 2chg_A Replication factor C sm 98.3 3.2E-06 1.1E-10 80.3 11.2 51 151-201 13-63 (226)
163 1sxj_B Activator 1 37 kDa subu 98.3 2E-06 6.8E-11 87.1 9.6 52 150-201 16-67 (323)
164 1jbk_A CLPB protein; beta barr 98.3 2.8E-06 9.6E-11 78.6 9.5 51 152-202 19-69 (195)
165 3e4g_A ATP synthase subunit S, 98.1 2.8E-06 9.4E-11 76.5 4.9 82 526-607 62-153 (176)
166 2p65_A Hypothetical protein PF 98.1 1.3E-05 4.3E-10 73.7 9.3 51 152-202 19-69 (187)
167 1io0_A Tropomodulin; LRR prote 98.0 4.1E-06 1.4E-10 77.2 5.5 108 521-629 32-162 (185)
168 1hqc_A RUVB; extended AAA-ATPa 98.0 8.6E-05 3E-09 75.0 15.4 51 151-201 8-63 (324)
169 1io0_A Tropomodulin; LRR prote 97.9 7.5E-06 2.6E-10 75.4 4.9 111 542-658 30-162 (185)
170 2ra8_A Uncharacterized protein 97.8 1.4E-05 4.9E-10 81.7 6.2 58 569-627 251-316 (362)
171 3e4g_A ATP synthase subunit S, 97.8 5.6E-06 1.9E-10 74.5 2.2 83 547-629 60-150 (176)
172 1iqp_A RFCS; clamp loader, ext 97.8 2.1E-05 7.1E-10 79.7 5.7 52 150-201 20-71 (327)
173 3h4m_A Proteasome-activating n 97.7 8.3E-05 2.8E-09 73.6 9.6 95 152-267 14-121 (285)
174 3rw6_A Nuclear RNA export fact 97.7 4.3E-05 1.5E-09 74.2 6.6 76 547-624 169-257 (267)
175 3b9p_A CG5977-PA, isoform A; A 97.7 0.00031 1.1E-08 69.9 12.3 96 152-268 18-125 (297)
176 3rw6_A Nuclear RNA export fact 97.6 7.8E-05 2.7E-09 72.3 6.6 58 568-628 168-230 (267)
177 3pvs_A Replication-associated 97.6 0.00033 1.1E-08 73.7 11.5 53 149-201 20-75 (447)
178 2qz4_A Paraplegin; AAA+, SPG7, 97.5 0.00035 1.2E-08 68.0 10.5 94 153-267 4-109 (262)
179 2w58_A DNAI, primosome compone 97.5 0.0004 1.4E-08 64.6 10.3 89 160-267 34-126 (202)
180 2chq_A Replication factor C sm 97.5 7.8E-05 2.7E-09 75.1 5.7 51 150-200 12-62 (319)
181 3ec2_A DNA replication protein 97.5 0.00028 9.4E-09 64.4 8.9 90 160-267 19-111 (180)
182 1xwi_A SKD1 protein; VPS4B, AA 97.5 0.0007 2.4E-08 68.1 11.9 96 152-267 9-116 (322)
183 1sxj_A Activator 1 95 kDa subu 97.4 0.00017 5.7E-09 77.9 7.4 66 150-220 34-116 (516)
184 1jr3_A DNA polymerase III subu 97.4 0.00038 1.3E-08 71.7 9.6 50 152-201 13-63 (373)
185 3d8b_A Fidgetin-like protein 1 97.4 0.0005 1.7E-08 70.4 10.2 95 152-267 81-187 (357)
186 1qvr_A CLPB protein; coiled co 97.4 0.00051 1.7E-08 78.9 10.5 103 152-268 167-275 (854)
187 3eie_A Vacuolar protein sortin 97.3 0.0004 1.4E-08 70.0 8.5 95 152-267 15-121 (322)
188 3vfd_A Spastin; ATPase, microt 97.3 0.00084 2.9E-08 69.6 11.1 96 151-267 111-218 (389)
189 3cf0_A Transitional endoplasmi 97.3 0.0011 3.9E-08 65.9 11.1 95 152-267 12-119 (301)
190 1sxj_D Activator 1 41 kDa subu 97.2 0.00029 9.8E-09 72.0 6.1 52 150-201 32-83 (353)
191 3u61_B DNA polymerase accessor 97.2 0.0011 3.9E-08 66.7 10.3 52 150-201 21-73 (324)
192 1sxj_C Activator 1 40 kDa subu 97.2 0.00058 2E-08 69.4 8.0 52 150-201 20-71 (340)
193 3pxg_A Negative regulator of g 97.2 0.00056 1.9E-08 72.7 8.0 49 153-201 178-226 (468)
194 3syl_A Protein CBBX; photosynt 97.2 0.00066 2.2E-08 67.9 8.0 47 156-202 32-93 (309)
195 3pfi_A Holliday junction ATP-d 97.2 0.0012 4.1E-08 66.9 9.8 52 150-201 24-80 (338)
196 4b4t_J 26S protease regulatory 97.1 0.0015 5.2E-08 66.6 10.1 95 152-267 145-252 (405)
197 4b4t_L 26S protease subunit RP 97.1 0.0021 7.2E-08 66.7 10.9 94 153-267 179-285 (437)
198 1r6b_X CLPA protein; AAA+, N-t 97.1 0.0024 8.3E-08 72.4 12.3 102 153-268 184-290 (758)
199 2zan_A Vacuolar protein sortin 97.1 0.0015 5E-08 68.9 9.6 49 152-200 131-191 (444)
200 1lv7_A FTSH; alpha/beta domain 97.1 0.0012 4.3E-08 63.9 8.5 50 152-201 9-70 (257)
201 4b4t_M 26S protease regulatory 97.0 0.0017 5.9E-08 67.3 9.3 95 152-267 178-285 (434)
202 4b4t_K 26S protease regulatory 97.0 0.0024 8.3E-08 66.1 10.4 94 153-267 170-276 (428)
203 2qp9_X Vacuolar protein sortin 97.0 0.00089 3E-08 68.3 7.1 95 152-267 48-154 (355)
204 2x8a_A Nuclear valosin-contain 96.9 0.0029 1E-07 61.8 9.8 94 153-267 8-114 (274)
205 4b4t_I 26S protease regulatory 96.9 0.0034 1.2E-07 64.3 10.4 95 152-267 179-286 (437)
206 4b4t_H 26S protease regulatory 96.9 0.003 1E-07 65.4 10.1 93 154-267 208-313 (467)
207 1d2n_A N-ethylmaleimide-sensit 96.9 0.0017 5.7E-08 63.6 7.2 45 156-200 34-88 (272)
208 4fcw_A Chaperone protein CLPB; 96.8 0.0019 6.6E-08 64.5 7.8 105 156-268 18-131 (311)
209 3bos_A Putative DNA replicatio 96.8 0.0024 8.2E-08 60.9 8.1 62 153-216 26-90 (242)
210 4fs7_A Uncharacterized protein 96.8 0.0041 1.4E-07 64.5 10.2 121 519-652 270-393 (394)
211 2ce7_A Cell division protein F 96.7 0.0056 1.9E-07 64.5 10.6 94 153-267 14-119 (476)
212 3n70_A Transport activator; si 96.7 0.0012 4.2E-08 57.7 4.4 45 156-200 2-48 (145)
213 2z4s_A Chromosomal replication 96.7 0.0037 1.3E-07 65.7 8.9 98 154-267 104-205 (440)
214 3pxi_A Negative regulator of g 96.7 0.0026 9E-08 72.0 8.0 49 153-201 178-226 (758)
215 2cvh_A DNA repair and recombin 96.7 0.0083 2.8E-07 56.3 10.3 84 177-267 21-116 (220)
216 1n0w_A DNA repair protein RAD5 96.6 0.008 2.7E-07 57.4 10.2 90 177-267 25-130 (243)
217 2vhj_A Ntpase P4, P4; non- hyd 96.6 0.0016 5.4E-08 64.2 5.1 68 177-267 124-193 (331)
218 3hr8_A Protein RECA; alpha and 96.6 0.008 2.7E-07 60.7 10.3 84 177-267 62-150 (356)
219 1l8q_A Chromosomal replication 96.6 0.0057 1.9E-07 61.5 9.1 49 164-214 23-73 (324)
220 4h09_A Hypothetical leucine ri 96.6 0.012 4E-07 60.6 11.5 124 497-627 215-342 (379)
221 4gt6_A Cell surface protein; l 96.6 0.028 9.5E-07 58.1 14.4 79 545-627 285-366 (394)
222 4fs7_A Uncharacterized protein 96.5 0.0089 3E-07 61.9 10.5 148 497-657 228-376 (394)
223 3io5_A Recombination and repai 96.5 0.011 3.7E-07 58.0 10.0 86 178-268 30-123 (333)
224 1ixz_A ATP-dependent metallopr 96.5 0.0043 1.5E-07 59.9 7.1 49 153-201 14-74 (254)
225 1iy2_A ATP-dependent metallopr 96.4 0.0054 1.8E-07 60.2 7.6 50 152-201 37-98 (278)
226 3hu3_A Transitional endoplasmi 96.4 0.0051 1.8E-07 65.3 7.9 94 153-267 202-308 (489)
227 1sxj_E Activator 1 40 kDa subu 96.4 0.0017 6E-08 66.2 4.1 50 151-200 10-60 (354)
228 3t15_A Ribulose bisphosphate c 96.4 0.0021 7.1E-08 63.7 4.4 27 175-201 35-61 (293)
229 2zr9_A Protein RECA, recombina 96.3 0.015 5.1E-07 58.8 10.2 84 177-267 62-150 (349)
230 1v5w_A DMC1, meiotic recombina 96.3 0.022 7.5E-07 57.6 11.4 89 177-266 123-229 (343)
231 2c9o_A RUVB-like 1; hexameric 96.3 0.0036 1.2E-07 66.2 5.7 48 154-201 36-88 (456)
232 1in4_A RUVB, holliday junction 96.3 0.0033 1.1E-07 63.5 5.1 52 150-201 20-76 (334)
233 1rz3_A Hypothetical protein rb 96.2 0.0052 1.8E-07 57.0 5.7 44 159-202 2-48 (201)
234 3uk6_A RUVB-like 2; hexameric 96.2 0.0072 2.5E-07 61.9 7.2 48 154-201 43-95 (368)
235 1xp8_A RECA protein, recombina 96.1 0.024 8.2E-07 57.6 10.4 84 177-267 75-163 (366)
236 1u94_A RECA protein, recombina 96.1 0.022 7.6E-07 57.6 10.1 83 177-266 64-151 (356)
237 2qgz_A Helicase loader, putati 96.1 0.0085 2.9E-07 59.6 6.9 53 160-214 133-189 (308)
238 4h09_A Hypothetical leucine ri 96.1 0.017 5.8E-07 59.4 9.4 114 497-617 238-355 (379)
239 3cf2_A TER ATPase, transitiona 96.1 0.0062 2.1E-07 68.1 6.3 94 154-268 203-309 (806)
240 2gno_A DNA polymerase III, gam 96.0 0.016 5.5E-07 57.4 8.7 41 159-199 1-41 (305)
241 2z43_A DNA repair and recombin 96.0 0.024 8.2E-07 56.8 10.1 89 177-266 108-213 (324)
242 2i1q_A DNA repair and recombin 96.0 0.017 5.7E-07 58.0 8.8 89 177-266 99-214 (322)
243 2w0m_A SSO2452; RECA, SSPF, un 96.0 0.026 8.9E-07 53.3 9.8 46 177-226 24-69 (235)
244 4gt6_A Cell surface protein; l 96.0 0.014 4.9E-07 60.3 8.5 85 516-603 279-367 (394)
245 3ice_A Transcription terminati 96.0 0.014 4.7E-07 58.8 7.6 98 167-268 164-273 (422)
246 3c8u_A Fructokinase; YP_612366 95.9 0.0082 2.8E-07 55.9 5.7 41 162-202 6-48 (208)
247 2dhr_A FTSH; AAA+ protein, hex 95.8 0.013 4.3E-07 62.2 7.1 50 152-201 28-89 (499)
248 3co5_A Putative two-component 95.8 0.003 1E-07 54.9 1.9 45 156-200 5-51 (143)
249 2px0_A Flagellar biosynthesis 95.8 0.038 1.3E-06 54.4 10.0 86 175-264 104-190 (296)
250 4a74_A DNA repair and recombin 95.8 0.035 1.2E-06 52.3 9.5 44 177-220 26-73 (231)
251 1ofh_A ATP-dependent HSL prote 95.8 0.0082 2.8E-07 59.7 5.3 47 155-201 15-75 (310)
252 1ypw_A Transitional endoplasmi 95.7 0.0053 1.8E-07 69.6 4.1 49 153-201 202-263 (806)
253 3dm5_A SRP54, signal recogniti 95.7 0.066 2.3E-06 55.4 11.6 28 175-202 99-126 (443)
254 3lda_A DNA repair protein RAD5 95.6 0.049 1.7E-06 56.0 10.4 89 177-266 179-283 (400)
255 1a5t_A Delta prime, HOLB; zinc 95.6 0.037 1.3E-06 55.7 9.3 41 161-201 8-49 (334)
256 3bh0_A DNAB-like replicative h 95.6 0.059 2E-06 53.7 10.5 49 177-229 69-117 (315)
257 1qhx_A CPT, protein (chloramph 95.5 0.0078 2.7E-07 54.4 3.6 25 177-201 4-28 (178)
258 3kb2_A SPBC2 prophage-derived 95.5 0.0085 2.9E-07 53.7 3.8 25 177-201 2-26 (173)
259 3lw7_A Adenylate kinase relate 95.4 0.0079 2.7E-07 54.0 3.4 20 177-196 2-21 (179)
260 2bjv_A PSP operon transcriptio 95.4 0.0093 3.2E-07 57.9 4.1 62 154-217 5-68 (265)
261 2ga8_A Hypothetical 39.9 kDa p 95.4 0.019 6.5E-07 57.4 6.2 45 158-202 2-50 (359)
262 3vaa_A Shikimate kinase, SK; s 95.4 0.0092 3.1E-07 55.1 3.7 26 176-201 25-50 (199)
263 1kgd_A CASK, peripheral plasma 95.3 0.01 3.5E-07 53.9 3.6 25 177-201 6-30 (180)
264 1zp6_A Hypothetical protein AT 95.3 0.0088 3E-07 54.8 3.2 24 176-199 9-32 (191)
265 1kag_A SKI, shikimate kinase I 95.3 0.0084 2.9E-07 53.9 3.0 25 177-201 5-29 (173)
266 3kl4_A SRP54, signal recogniti 95.3 0.091 3.1E-06 54.4 11.1 90 175-266 96-189 (433)
267 2r62_A Cell division protease 95.3 0.007 2.4E-07 58.9 2.6 49 153-201 9-69 (268)
268 4eun_A Thermoresistant glucoki 95.3 0.012 4E-07 54.5 3.9 27 174-200 27-53 (200)
269 2xxa_A Signal recognition part 95.2 0.088 3E-06 54.7 10.9 90 175-265 99-192 (433)
270 3trf_A Shikimate kinase, SK; a 95.2 0.012 4E-07 53.6 3.8 26 176-201 5-30 (185)
271 3uie_A Adenylyl-sulfate kinase 95.2 0.014 4.7E-07 54.0 4.2 28 174-201 23-50 (200)
272 2ck3_D ATP synthase subunit be 95.2 0.17 5.9E-06 52.5 12.6 101 167-268 143-265 (482)
273 2r44_A Uncharacterized protein 95.1 0.014 4.9E-07 58.7 4.6 45 155-201 27-71 (331)
274 1g8p_A Magnesium-chelatase 38 95.1 0.011 3.9E-07 59.9 3.8 50 152-201 21-70 (350)
275 3m6a_A ATP-dependent protease 95.1 0.042 1.4E-06 59.2 8.4 47 155-201 81-133 (543)
276 1sky_E F1-ATPase, F1-ATP synth 95.1 0.054 1.8E-06 56.3 8.8 88 178-267 153-256 (473)
277 2hf9_A Probable hydrogenase ni 95.1 0.023 8E-07 53.4 5.5 40 162-201 24-63 (226)
278 1ly1_A Polynucleotide kinase; 95.1 0.012 4.2E-07 53.1 3.4 22 177-198 3-24 (181)
279 1ye8_A Protein THEP1, hypothet 95.0 0.014 4.9E-07 52.7 3.7 24 178-201 2-25 (178)
280 3t61_A Gluconokinase; PSI-biol 95.0 0.011 3.9E-07 54.6 3.2 25 176-200 18-42 (202)
281 1odf_A YGR205W, hypothetical 3 95.0 0.028 9.5E-07 55.2 6.1 29 174-202 29-57 (290)
282 3tr0_A Guanylate kinase, GMP k 95.0 0.013 4.3E-07 54.4 3.4 24 177-200 8-31 (205)
283 3pxi_A Negative regulator of g 95.0 0.019 6.5E-07 64.9 5.5 60 155-216 491-559 (758)
284 1pzn_A RAD51, DNA repair and r 95.0 0.061 2.1E-06 54.4 8.7 90 177-267 132-242 (349)
285 3rfe_A Platelet glycoprotein I 95.0 0.026 9E-07 47.9 5.0 51 552-603 12-65 (130)
286 3a00_A Guanylate kinase, GMP k 95.0 0.011 3.9E-07 53.9 2.9 25 177-201 2-26 (186)
287 1knq_A Gluconate kinase; ALFA/ 94.9 0.015 5.1E-07 52.4 3.6 25 176-200 8-32 (175)
288 4a1f_A DNAB helicase, replicat 94.9 0.12 4E-06 51.7 10.4 48 177-228 47-94 (338)
289 1nks_A Adenylate kinase; therm 94.9 0.016 5.5E-07 53.0 3.8 26 177-202 2-27 (194)
290 2rhm_A Putative kinase; P-loop 94.9 0.018 6.1E-07 52.7 4.0 25 176-200 5-29 (193)
291 2bdt_A BH3686; alpha-beta prot 94.9 0.015 5.2E-07 53.1 3.5 22 177-198 3-24 (189)
292 2kjq_A DNAA-related protein; s 94.8 0.02 6.9E-07 50.0 4.1 39 175-215 35-73 (149)
293 1j8m_F SRP54, signal recogniti 94.8 0.16 5.6E-06 49.9 11.0 88 176-265 98-189 (297)
294 1kht_A Adenylate kinase; phosp 94.8 0.017 5.7E-07 52.8 3.7 25 177-201 4-28 (192)
295 2dr3_A UPF0273 protein PH0284; 94.8 0.14 4.8E-06 48.6 10.5 46 177-226 24-69 (247)
296 3iij_A Coilin-interacting nucl 94.8 0.015 5E-07 52.7 3.2 26 176-201 11-36 (180)
297 4gp7_A Metallophosphoesterase; 94.8 0.012 4.1E-07 52.9 2.5 21 177-197 10-30 (171)
298 1via_A Shikimate kinase; struc 94.8 0.015 5E-07 52.4 3.1 25 177-201 5-29 (175)
299 1ls1_A Signal recognition part 94.8 0.11 3.8E-06 51.1 9.7 89 175-265 97-189 (295)
300 2bbw_A Adenylate kinase 4, AK4 94.8 0.019 6.4E-07 55.1 4.0 27 175-201 26-52 (246)
301 1ojl_A Transcriptional regulat 94.8 0.021 7.2E-07 56.6 4.4 45 156-200 3-49 (304)
302 2ze6_A Isopentenyl transferase 94.8 0.017 6E-07 55.5 3.7 25 177-201 2-26 (253)
303 3asz_A Uridine kinase; cytidin 94.8 0.017 6E-07 53.7 3.6 27 175-201 5-31 (211)
304 1fx0_B ATP synthase beta chain 94.7 0.093 3.2E-06 54.7 9.3 90 177-267 166-277 (498)
305 2wsm_A Hydrogenase expression/ 94.7 0.024 8.3E-07 53.1 4.6 42 160-201 14-55 (221)
306 2if2_A Dephospho-COA kinase; a 94.7 0.017 5.7E-07 53.5 3.4 22 177-198 2-23 (204)
307 3e70_C DPA, signal recognition 94.7 0.31 1E-05 48.6 12.8 57 174-232 127-184 (328)
308 3nbx_X ATPase RAVA; AAA+ ATPas 94.7 0.019 6.5E-07 60.9 4.2 44 156-201 23-66 (500)
309 1zuh_A Shikimate kinase; alpha 94.7 0.02 6.7E-07 51.1 3.7 26 176-201 7-32 (168)
310 3tau_A Guanylate kinase, GMP k 94.7 0.019 6.6E-07 53.4 3.8 27 175-201 7-33 (208)
311 2jaq_A Deoxyguanosine kinase; 94.7 0.019 6.4E-07 53.1 3.7 24 178-201 2-25 (205)
312 2yvu_A Probable adenylyl-sulfa 94.7 0.022 7.7E-07 51.8 4.1 28 175-202 12-39 (186)
313 3rfe_A Platelet glycoprotein I 94.7 0.057 2E-06 45.8 6.4 34 526-559 32-66 (130)
314 1xjc_A MOBB protein homolog; s 94.7 0.024 8.3E-07 50.4 4.2 28 175-202 3-30 (169)
315 1cke_A CK, MSSA, protein (cyti 94.7 0.019 6.5E-07 54.1 3.7 25 177-201 6-30 (227)
316 1gvn_B Zeta; postsegregational 94.7 0.031 1.1E-06 54.8 5.4 26 175-200 32-57 (287)
317 2j41_A Guanylate kinase; GMP, 94.7 0.018 6.1E-07 53.4 3.5 25 176-200 6-30 (207)
318 1lvg_A Guanylate kinase, GMP k 94.7 0.015 5.1E-07 53.7 2.9 25 177-201 5-29 (198)
319 1y63_A LMAJ004144AAA protein; 94.6 0.022 7.6E-07 51.8 4.0 25 175-199 9-33 (184)
320 2c95_A Adenylate kinase 1; tra 94.6 0.023 7.7E-07 52.1 4.0 27 175-201 8-34 (196)
321 1uf9_A TT1252 protein; P-loop, 94.6 0.021 7.1E-07 52.7 3.8 26 174-199 6-31 (203)
322 2qor_A Guanylate kinase; phosp 94.6 0.017 5.7E-07 53.6 3.0 25 176-200 12-36 (204)
323 2iyv_A Shikimate kinase, SK; t 94.6 0.017 5.7E-07 52.5 3.0 25 177-201 3-27 (184)
324 3tqc_A Pantothenate kinase; bi 94.6 0.032 1.1E-06 55.5 5.1 27 175-201 91-117 (321)
325 1vma_A Cell division protein F 94.5 0.095 3.3E-06 51.7 8.5 38 175-214 103-140 (306)
326 1ukz_A Uridylate kinase; trans 94.5 0.024 8.3E-07 52.3 4.0 27 174-200 13-39 (203)
327 1htw_A HI0065; nucleotide-bind 94.5 0.022 7.4E-07 50.3 3.5 25 176-200 33-57 (158)
328 1tev_A UMP-CMP kinase; ploop, 94.5 0.023 7.8E-07 52.0 3.8 25 176-200 3-27 (196)
329 1znw_A Guanylate kinase, GMP k 94.5 0.021 7.2E-07 53.1 3.5 25 177-201 21-45 (207)
330 3tlx_A Adenylate kinase 2; str 94.5 0.05 1.7E-06 52.0 6.1 27 174-200 27-53 (243)
331 3cm0_A Adenylate kinase; ATP-b 94.4 0.024 8.2E-07 51.5 3.7 24 177-200 5-28 (186)
332 2bwj_A Adenylate kinase 5; pho 94.4 0.024 8.3E-07 52.1 3.7 26 176-201 12-37 (199)
333 1e6c_A Shikimate kinase; phosp 94.4 0.021 7.1E-07 51.2 3.2 25 177-201 3-27 (173)
334 3hws_A ATP-dependent CLP prote 94.4 0.037 1.3E-06 56.4 5.4 46 156-201 16-76 (363)
335 3umf_A Adenylate kinase; rossm 94.3 0.028 9.7E-07 52.4 4.0 28 174-201 27-54 (217)
336 3ney_A 55 kDa erythrocyte memb 94.3 0.026 8.9E-07 51.7 3.6 27 175-201 18-44 (197)
337 1jjv_A Dephospho-COA kinase; P 94.3 0.022 7.6E-07 52.8 3.3 22 177-198 3-24 (206)
338 1pgv_A TMD-1, tropomodulin TMD 94.3 0.085 2.9E-06 48.1 6.9 58 546-603 68-136 (197)
339 1r6b_X CLPA protein; AAA+, N-t 94.3 0.078 2.7E-06 60.0 8.3 103 155-268 458-569 (758)
340 1uj2_A Uridine-cytidine kinase 94.3 0.027 9.3E-07 54.1 3.8 28 174-201 20-47 (252)
341 2jeo_A Uridine-cytidine kinase 94.3 0.024 8.3E-07 54.2 3.5 26 175-200 24-49 (245)
342 3aez_A Pantothenate kinase; tr 94.2 0.026 9E-07 56.0 3.8 29 174-202 88-116 (312)
343 1rj9_A FTSY, signal recognitio 94.2 0.032 1.1E-06 55.1 4.4 28 175-202 101-128 (304)
344 2cdn_A Adenylate kinase; phosp 94.2 0.032 1.1E-06 51.5 4.2 26 176-201 20-45 (201)
345 2qt1_A Nicotinamide riboside k 94.2 0.027 9.1E-07 52.3 3.6 24 176-199 21-44 (207)
346 3cmu_A Protein RECA, recombina 94.2 0.11 3.6E-06 63.7 9.5 85 175-266 1426-1515(2050)
347 1z6g_A Guanylate kinase; struc 94.2 0.021 7.2E-07 53.6 2.9 24 177-200 24-47 (218)
348 1ex7_A Guanylate kinase; subst 94.2 0.023 7.9E-07 51.6 3.0 24 177-200 2-25 (186)
349 3cf2_A TER ATPase, transitiona 94.2 0.076 2.6E-06 59.4 7.7 94 153-267 475-581 (806)
350 2pt5_A Shikimate kinase, SK; a 94.2 0.029 1E-06 49.9 3.7 24 178-201 2-25 (168)
351 2f1r_A Molybdopterin-guanine d 94.2 0.027 9.2E-07 50.4 3.4 27 177-203 3-29 (171)
352 3a4m_A L-seryl-tRNA(SEC) kinas 94.2 0.028 9.5E-07 54.3 3.8 26 176-201 4-29 (260)
353 2j37_W Signal recognition part 94.2 0.44 1.5E-05 50.3 13.2 28 175-202 100-127 (504)
354 4e22_A Cytidylate kinase; P-lo 94.2 0.027 9.1E-07 54.2 3.6 26 176-201 27-52 (252)
355 1qf9_A UMP/CMP kinase, protein 94.2 0.029 1E-06 51.2 3.7 26 176-201 6-31 (194)
356 2plr_A DTMP kinase, probable t 94.2 0.029 9.9E-07 52.1 3.8 26 177-202 5-30 (213)
357 2grj_A Dephospho-COA kinase; T 94.1 0.03 1E-06 51.3 3.6 27 174-200 10-36 (192)
358 2p5t_B PEZT; postsegregational 94.1 0.04 1.4E-06 53.0 4.7 27 175-201 31-57 (253)
359 1um8_A ATP-dependent CLP prote 94.1 0.047 1.6E-06 56.0 5.6 24 177-200 73-96 (376)
360 3b85_A Phosphate starvation-in 94.1 0.028 9.7E-07 52.1 3.5 22 178-199 24-45 (208)
361 2yhs_A FTSY, cell division pro 94.1 0.28 9.6E-06 51.4 11.3 41 176-219 293-333 (503)
362 3fwy_A Light-independent proto 94.1 0.035 1.2E-06 55.2 4.3 41 174-216 46-86 (314)
363 2pbr_A DTMP kinase, thymidylat 94.1 0.031 1.1E-06 51.1 3.7 24 178-201 2-25 (195)
364 1pgv_A TMD-1, tropomodulin TMD 94.1 0.03 1E-06 51.1 3.5 105 498-603 40-167 (197)
365 2vli_A Antibiotic resistance p 94.1 0.021 7.1E-07 51.7 2.5 26 176-201 5-30 (183)
366 3k1j_A LON protease, ATP-depen 94.1 0.034 1.2E-06 60.9 4.5 50 150-201 36-85 (604)
367 2i3b_A HCR-ntpase, human cance 94.0 0.028 9.7E-07 51.3 3.3 24 178-201 3-26 (189)
368 1s96_A Guanylate kinase, GMP k 94.0 0.03 1E-06 52.5 3.4 26 176-201 16-41 (219)
369 1aky_A Adenylate kinase; ATP:A 94.0 0.036 1.2E-06 52.0 4.0 26 176-201 4-29 (220)
370 2r6a_A DNAB helicase, replicat 93.9 0.18 6E-06 53.1 9.6 48 177-227 204-251 (454)
371 2onk_A Molybdate/tungstate ABC 93.9 0.032 1.1E-06 53.1 3.5 27 174-201 23-49 (240)
372 2wwf_A Thymidilate kinase, put 93.9 0.039 1.3E-06 51.3 4.0 32 176-208 10-41 (212)
373 1nn5_A Similar to deoxythymidy 93.9 0.04 1.4E-06 51.3 4.1 32 176-208 9-40 (215)
374 1gtv_A TMK, thymidylate kinase 93.9 0.021 7.2E-07 53.2 2.1 26 177-202 1-26 (214)
375 3l0o_A Transcription terminati 93.8 0.062 2.1E-06 54.0 5.5 52 166-218 164-217 (427)
376 2ffh_A Protein (FFH); SRP54, s 93.8 0.32 1.1E-05 50.2 11.0 88 175-265 97-189 (425)
377 1zak_A Adenylate kinase; ATP:A 93.8 0.036 1.2E-06 52.1 3.5 26 176-201 5-30 (222)
378 1zd8_A GTP:AMP phosphotransfer 93.8 0.037 1.3E-06 52.2 3.6 25 176-200 7-31 (227)
379 2b8t_A Thymidine kinase; deoxy 93.7 0.03 1E-06 52.4 2.9 86 176-266 12-99 (223)
380 3fb4_A Adenylate kinase; psych 93.7 0.039 1.4E-06 51.5 3.8 23 178-200 2-24 (216)
381 3b9q_A Chloroplast SRP recepto 93.7 0.045 1.5E-06 54.0 4.2 27 176-202 100-126 (302)
382 2pcj_A ABC transporter, lipopr 93.6 0.03 1E-06 52.7 2.7 24 177-200 31-54 (224)
383 2z0h_A DTMP kinase, thymidylat 93.6 0.042 1.4E-06 50.3 3.6 25 178-202 2-26 (197)
384 3nwj_A ATSK2; P loop, shikimat 93.6 0.036 1.2E-06 53.1 3.2 25 177-201 49-73 (250)
385 3tif_A Uncharacterized ABC tra 93.6 0.035 1.2E-06 52.7 3.1 33 177-212 32-64 (235)
386 2pez_A Bifunctional 3'-phospho 93.6 0.043 1.5E-06 49.5 3.6 27 176-202 5-31 (179)
387 2ehv_A Hypothetical protein PH 93.6 0.037 1.3E-06 52.9 3.3 23 177-199 31-53 (251)
388 1m7g_A Adenylylsulfate kinase; 93.5 0.046 1.6E-06 50.8 3.8 28 174-201 23-50 (211)
389 3lnc_A Guanylate kinase, GMP k 93.5 0.027 9.1E-07 53.4 2.1 24 177-200 28-52 (231)
390 3dl0_A Adenylate kinase; phosp 93.5 0.045 1.5E-06 51.1 3.6 23 178-200 2-24 (216)
391 2q6t_A DNAB replication FORK h 93.4 0.29 9.8E-06 51.3 10.2 49 177-228 201-249 (444)
392 1vht_A Dephospho-COA kinase; s 93.4 0.049 1.7E-06 50.9 3.8 23 176-198 4-26 (218)
393 2v54_A DTMP kinase, thymidylat 93.4 0.046 1.6E-06 50.4 3.5 25 176-200 4-28 (204)
394 1sq5_A Pantothenate kinase; P- 93.3 0.048 1.7E-06 54.1 3.8 28 174-201 78-105 (308)
395 3gfo_A Cobalt import ATP-bindi 93.3 0.036 1.2E-06 53.9 2.7 33 177-212 35-67 (275)
396 1np6_A Molybdopterin-guanine d 93.3 0.057 2E-06 48.4 3.9 27 176-202 6-32 (174)
397 2cbz_A Multidrug resistance-as 93.3 0.038 1.3E-06 52.5 2.8 25 177-201 32-56 (237)
398 2d2e_A SUFC protein; ABC-ATPas 93.3 0.044 1.5E-06 52.5 3.3 23 177-199 30-52 (250)
399 3r20_A Cytidylate kinase; stru 93.3 0.053 1.8E-06 51.1 3.7 26 176-201 9-34 (233)
400 2f6r_A COA synthase, bifunctio 93.3 0.048 1.6E-06 53.3 3.6 24 175-198 74-97 (281)
401 1b0u_A Histidine permease; ABC 93.3 0.037 1.3E-06 53.5 2.7 33 177-212 33-65 (262)
402 2zts_A Putative uncharacterize 93.3 0.14 4.7E-06 48.8 6.8 48 177-227 31-78 (251)
403 1ji0_A ABC transporter; ATP bi 93.2 0.039 1.3E-06 52.6 2.8 33 177-212 33-65 (240)
404 1g41_A Heat shock protein HSLU 93.2 0.062 2.1E-06 55.7 4.4 47 155-201 15-75 (444)
405 3ake_A Cytidylate kinase; CMP 93.2 0.055 1.9E-06 50.0 3.8 25 177-201 3-27 (208)
406 1g6h_A High-affinity branched- 93.2 0.039 1.3E-06 53.1 2.8 33 177-212 34-66 (257)
407 2zu0_C Probable ATP-dependent 93.2 0.046 1.6E-06 52.9 3.3 23 177-199 47-69 (267)
408 1sgw_A Putative ABC transporte 93.1 0.034 1.2E-06 51.8 2.2 25 177-201 36-60 (214)
409 2olj_A Amino acid ABC transpor 93.1 0.04 1.4E-06 53.2 2.7 33 177-212 51-83 (263)
410 3end_A Light-independent proto 93.1 0.12 4.2E-06 51.1 6.4 44 173-218 38-81 (307)
411 3p32_A Probable GTPase RV1496/ 93.1 0.12 4.2E-06 52.3 6.5 39 164-202 65-105 (355)
412 2og2_A Putative signal recogni 93.1 0.062 2.1E-06 54.3 4.2 27 176-202 157-183 (359)
413 4g1u_C Hemin import ATP-bindin 93.1 0.04 1.4E-06 53.3 2.7 25 177-201 38-62 (266)
414 1cr0_A DNA primase/helicase; R 93.1 0.15 5.2E-06 50.1 7.1 48 177-228 36-84 (296)
415 2pze_A Cystic fibrosis transme 93.1 0.042 1.4E-06 51.9 2.8 25 177-201 35-59 (229)
416 3d3q_A TRNA delta(2)-isopenten 93.0 0.055 1.9E-06 53.9 3.6 25 177-201 8-32 (340)
417 2eyu_A Twitching motility prot 93.0 0.092 3.1E-06 50.6 5.1 28 175-202 24-51 (261)
418 1vpl_A ABC transporter, ATP-bi 93.0 0.043 1.5E-06 52.7 2.7 33 177-212 42-74 (256)
419 3sr0_A Adenylate kinase; phosp 93.0 0.064 2.2E-06 49.6 3.8 24 178-201 2-25 (206)
420 2ff7_A Alpha-hemolysin translo 93.0 0.045 1.5E-06 52.4 2.8 33 177-212 36-68 (247)
421 3be4_A Adenylate kinase; malar 92.9 0.062 2.1E-06 50.2 3.7 25 177-201 6-30 (217)
422 1e4v_A Adenylate kinase; trans 92.9 0.063 2.2E-06 50.0 3.7 23 178-200 2-24 (214)
423 2xb4_A Adenylate kinase; ATP-b 92.9 0.064 2.2E-06 50.4 3.7 23 178-200 2-24 (223)
424 1mv5_A LMRA, multidrug resista 92.9 0.046 1.6E-06 52.2 2.7 25 177-201 29-53 (243)
425 2qi9_C Vitamin B12 import ATP- 92.8 0.048 1.6E-06 52.2 2.7 25 177-201 27-51 (249)
426 3bgw_A DNAB-like replicative h 92.8 0.36 1.2E-05 50.4 9.6 48 177-228 198-245 (444)
427 2ghi_A Transport protein; mult 92.8 0.049 1.7E-06 52.5 2.8 24 177-200 47-70 (260)
428 2ixe_A Antigen peptide transpo 92.8 0.049 1.7E-06 52.9 2.8 33 177-212 46-78 (271)
429 1ak2_A Adenylate kinase isoenz 92.7 0.077 2.6E-06 50.2 4.1 26 176-201 16-41 (233)
430 2ihy_A ABC transporter, ATP-bi 92.7 0.05 1.7E-06 53.1 2.7 25 177-201 48-72 (279)
431 2yz2_A Putative ABC transporte 92.7 0.05 1.7E-06 52.7 2.8 33 177-212 34-66 (266)
432 2nq2_C Hypothetical ABC transp 92.7 0.051 1.7E-06 52.1 2.7 25 177-201 32-56 (253)
433 1tue_A Replication protein E1; 92.6 0.1 3.5E-06 47.7 4.5 38 164-201 45-83 (212)
434 1zu4_A FTSY; GTPase, signal re 92.6 0.088 3E-06 52.4 4.4 38 175-214 104-141 (320)
435 3crm_A TRNA delta(2)-isopenten 92.5 0.071 2.4E-06 52.8 3.6 24 177-200 6-29 (323)
436 1oix_A RAS-related protein RAB 92.5 0.071 2.4E-06 48.6 3.4 25 176-200 29-53 (191)
437 2v9p_A Replication protein E1; 92.5 0.069 2.3E-06 52.6 3.5 25 176-200 126-150 (305)
438 3cmw_A Protein RECA, recombina 92.3 0.3 1E-05 59.0 9.2 83 177-266 1432-1519(1706)
439 3cmw_A Protein RECA, recombina 92.3 0.3 1E-05 58.9 9.2 86 176-268 383-473 (1706)
440 1a7j_A Phosphoribulokinase; tr 92.2 0.051 1.7E-06 53.4 2.1 27 175-201 4-30 (290)
441 3cmu_A Protein RECA, recombina 92.1 0.35 1.2E-05 59.2 9.5 85 176-267 383-472 (2050)
442 2pjz_A Hypothetical protein ST 92.1 0.066 2.3E-06 51.6 2.7 24 177-200 31-54 (263)
443 1q3t_A Cytidylate kinase; nucl 92.1 0.1 3.5E-06 49.4 4.1 27 175-201 15-41 (236)
444 4eaq_A DTMP kinase, thymidylat 92.1 0.15 5E-06 48.1 5.1 28 175-202 25-52 (229)
445 3sop_A Neuronal-specific septi 92.1 0.084 2.9E-06 51.2 3.4 25 178-202 4-28 (270)
446 4gzl_A RAS-related C3 botulinu 92.1 0.089 3E-06 48.5 3.5 28 173-200 27-54 (204)
447 1q57_A DNA primase/helicase; d 92.0 0.7 2.4E-05 49.2 10.9 49 177-228 243-291 (503)
448 3exa_A TRNA delta(2)-isopenten 92.0 0.088 3E-06 51.6 3.4 25 176-200 3-27 (322)
449 1svm_A Large T antigen; AAA+ f 91.9 0.19 6.4E-06 51.2 6.0 27 174-200 167-193 (377)
450 1ltq_A Polynucleotide kinase; 91.9 0.09 3.1E-06 51.9 3.6 23 177-199 3-25 (301)
451 3foz_A TRNA delta(2)-isopenten 91.9 0.11 3.8E-06 50.8 4.0 26 175-200 9-34 (316)
452 2f9l_A RAB11B, member RAS onco 91.9 0.094 3.2E-06 48.1 3.4 24 177-200 6-29 (199)
453 1yrb_A ATP(GTP)binding protein 91.8 0.12 4E-06 49.8 4.3 26 176-201 14-39 (262)
454 3fvq_A Fe(3+) IONS import ATP- 91.8 0.088 3E-06 53.0 3.3 25 177-201 31-55 (359)
455 1nlf_A Regulatory protein REPA 91.7 0.089 3.1E-06 51.3 3.3 25 177-201 31-55 (279)
456 1g8f_A Sulfate adenylyltransfe 91.7 0.17 6E-06 53.5 5.6 46 157-202 374-421 (511)
457 3lv8_A DTMP kinase, thymidylat 91.7 0.27 9.3E-06 46.3 6.5 31 176-207 27-57 (236)
458 2bbs_A Cystic fibrosis transme 91.7 0.078 2.7E-06 51.9 2.8 25 177-201 65-89 (290)
459 3tui_C Methionine import ATP-b 91.6 0.092 3.2E-06 52.9 3.3 25 177-201 55-79 (366)
460 3a8t_A Adenylate isopentenyltr 91.6 0.077 2.6E-06 52.7 2.6 25 176-200 40-64 (339)
461 3nh6_A ATP-binding cassette SU 91.6 0.074 2.5E-06 52.5 2.5 26 176-201 80-105 (306)
462 3vr4_D V-type sodium ATPase su 91.5 0.16 5.5E-06 52.4 4.9 90 178-267 153-259 (465)
463 2wji_A Ferrous iron transport 91.5 0.11 3.7E-06 45.9 3.3 23 177-199 4-26 (165)
464 4tmk_A Protein (thymidylate ki 91.5 0.32 1.1E-05 45.1 6.6 27 177-203 4-30 (213)
465 1tq4_A IIGP1, interferon-induc 91.4 0.14 4.7E-06 52.8 4.4 25 175-199 68-92 (413)
466 3upu_A ATP-dependent DNA helic 91.4 0.37 1.3E-05 50.7 7.9 44 159-203 29-72 (459)
467 1z47_A CYSA, putative ABC-tran 91.4 0.1 3.5E-06 52.6 3.3 25 177-201 42-66 (355)
468 1cp2_A CP2, nitrogenase iron p 91.3 0.25 8.4E-06 47.7 5.9 39 177-217 2-40 (269)
469 2ged_A SR-beta, signal recogni 91.2 0.23 8E-06 44.9 5.4 26 175-200 47-72 (193)
470 1nij_A Hypothetical protein YJ 91.2 0.11 3.6E-06 51.9 3.2 26 175-200 3-28 (318)
471 2dyk_A GTP-binding protein; GT 91.1 0.13 4.6E-06 44.8 3.5 24 177-200 2-25 (161)
472 2yyz_A Sugar ABC transporter, 91.1 0.11 3.8E-06 52.4 3.3 33 177-212 30-62 (359)
473 3kta_A Chromosome segregation 91.1 0.12 4.1E-06 46.6 3.2 24 177-200 27-50 (182)
474 3rlf_A Maltose/maltodextrin im 91.1 0.11 3.8E-06 52.7 3.3 33 177-212 30-62 (381)
475 2zej_A Dardarin, leucine-rich 91.1 0.11 3.6E-06 47.0 2.8 21 178-198 4-24 (184)
476 3zvl_A Bifunctional polynucleo 91.1 0.092 3.2E-06 54.5 2.7 27 174-200 256-282 (416)
477 2vp4_A Deoxynucleoside kinase; 91.1 0.073 2.5E-06 50.2 1.8 24 176-199 20-43 (230)
478 2ocp_A DGK, deoxyguanosine kin 91.1 0.14 4.8E-06 48.6 3.8 26 176-201 2-27 (241)
479 3mfy_A V-type ATP synthase alp 91.0 1.2 4E-05 47.0 10.8 57 167-227 217-275 (588)
480 2it1_A 362AA long hypothetical 91.0 0.12 4E-06 52.3 3.3 33 177-212 30-62 (362)
481 3cr8_A Sulfate adenylyltranfer 91.0 0.21 7.2E-06 53.6 5.4 27 176-202 369-395 (552)
482 3ld9_A DTMP kinase, thymidylat 90.9 0.31 1.1E-05 45.4 5.9 30 173-202 18-47 (223)
483 3d31_A Sulfate/molybdate ABC t 90.9 0.1 3.5E-06 52.4 2.7 33 177-212 27-59 (348)
484 1g29_1 MALK, maltose transport 90.9 0.12 4.2E-06 52.5 3.3 25 177-201 30-54 (372)
485 2c61_A A-type ATP synthase non 90.8 0.14 4.8E-06 53.1 3.7 92 177-268 153-261 (469)
486 2v3c_C SRP54, signal recogniti 90.8 0.097 3.3E-06 54.4 2.6 27 176-202 99-125 (432)
487 3eph_A TRNA isopentenyltransfe 90.8 0.14 4.9E-06 52.0 3.7 25 177-201 3-27 (409)
488 1v43_A Sugar-binding transport 90.8 0.12 4.2E-06 52.3 3.3 33 177-212 38-70 (372)
489 3gqb_B V-type ATP synthase bet 90.7 0.46 1.6E-05 49.0 7.3 90 178-267 149-262 (464)
490 2ce2_X GTPase HRAS; signaling 90.6 0.14 4.9E-06 44.7 3.2 23 178-200 5-27 (166)
491 1lw7_A Transcriptional regulat 90.6 0.14 5E-06 52.0 3.6 27 176-202 170-196 (365)
492 2r8r_A Sensor protein; KDPD, P 90.6 0.18 6.1E-06 46.9 3.8 38 178-217 8-45 (228)
493 3kjh_A CO dehydrogenase/acetyl 90.5 0.3 1E-05 46.4 5.7 42 178-221 2-43 (254)
494 1oxx_K GLCV, glucose, ABC tran 90.5 0.096 3.3E-06 52.8 2.1 25 177-201 32-56 (353)
495 2wjg_A FEOB, ferrous iron tran 90.4 0.15 5.2E-06 45.9 3.3 23 177-199 8-30 (188)
496 1z2a_A RAS-related protein RAB 90.4 0.15 5.3E-06 44.7 3.2 24 177-200 6-29 (168)
497 2orw_A Thymidine kinase; TMTK, 90.2 0.22 7.4E-06 45.1 4.1 26 177-202 4-29 (184)
498 2afh_E Nitrogenase iron protei 90.2 0.36 1.2E-05 47.1 6.1 40 176-217 2-41 (289)
499 3io3_A DEHA2D07832P; chaperone 90.2 0.39 1.3E-05 48.3 6.3 45 173-219 15-61 (348)
500 3jvv_A Twitching mobility prot 90.2 0.24 8.3E-06 50.0 4.8 27 176-202 123-149 (356)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=1.1e-39 Score=358.30 Aligned_cols=282 Identities=15% Similarity=0.150 Sum_probs=209.2
Q ss_pred cchHHHHHHHHHHhccC---CccEEEEEcCCCChHHHHHHHHHH--HhhhccCCCEEEEEEEcCCC--CHHHHHHHHHHh
Q 047163 158 DSKMEVFQDVMEALKDD---KLNIIGVYGMGGVGKTTLVKQVAK--QVMEDKLFDKVVMAEVTQNP--DHHKIQDKLAFG 230 (658)
Q Consensus 158 ~gr~~~~~~l~~~l~~~---~~~vi~I~G~gGiGKTtLa~~v~~--~~~~~~~F~~~~wv~v~~~~--~~~~~~~~i~~~ 230 (658)
+||++++++|.++|..+ ..++|+|+||||+||||||+++|+ +...+.+|++++||++++.+ +...+++.|+.+
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~ 210 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLM 210 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHHHHH
Confidence 49999999999999733 679999999999999999999998 46667889999999999985 789999999999
Q ss_pred cCCCCC-------CCCCHHHHHHHHHHHHhcCC-eEEEEEecCCcccCc--ccc-----cCcccCC----Ccc-------
Q 047163 231 LGMEFG-------FNENMFQRASRLCERLKKEK-RLLIILDNIWIELEF--DKI-----GIPSGNV----EKE------- 284 (658)
Q Consensus 231 l~~~~~-------~~~~~~~~~~~l~~~l~~~k-~~LlVlDdv~~~~~~--~~l-----~~~~~~~----~~~------- 284 (658)
++.... ...+..+....+.+.+. ++ ||||||||||+.+++ ... ....... ..+
T Consensus 211 l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~-~~kr~LlVLDdv~~~~~~~~~~~~gs~ilvTTR~~~v~~~~~~~~~~~~ 289 (549)
T 2a5y_B 211 LKSEDDLLNFPSVEHVTSVVLKRMICNALI-DRPNTLFVFDDVVQEETIRWAQELRLRCLVTTRDVEISNAASQTCEFIE 289 (549)
T ss_dssp HTTTSCCTTCCCCTTCCHHHHHHHHHHHHT-TSTTEEEEEEEECCHHHHHHHHHTTCEEEEEESBGGGGGGCCSCEEEEE
T ss_pred HhcCcccccccccccccHHHHHHHHHHHHc-CCCcEEEEEECCCCchhhcccccCCCEEEEEcCCHHHHHHcCCCCeEEE
Confidence 876521 11233445678888887 55 999999999998754 211 0000000 000
Q ss_pred -ccccchhhHHhhhccC-------CccHHHHHHHHHcCCchhHHHHHHHHhccCChHHHHHHHHH-HhcCCCCCCCchhH
Q 047163 285 -RTDARSRCTIILTKTS-------TIQPIADEIVEICGGLPVAVTTVANALKSKSLDIWKDALNQ-LRSSNPREIDGMDK 355 (658)
Q Consensus 285 -~~~~~~~~~~Lf~~~~-------~~~~~~~~i~~~c~glPLai~~~g~~L~~~~~~~w~~~l~~-l~~~~~~~~~~~~~ 355 (658)
......+||+||.+++ ...+++++|+++|+|+||||+++|+.|+.++ .+|...+.. +.... ..
T Consensus 290 l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~-w~~~~~l~~~l~~~~-------~~ 361 (549)
T 2a5y_B 290 VTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNPATLMMFFKSCEPKT-FEKMAQLNNKLESRG-------LV 361 (549)
T ss_dssp CCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSS-HHHHHHHHHHHHHHC-------SS
T ss_pred CCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCChHHHHHHHHHhccch-HHHHHHhHHHhhccc-------HH
Confidence 1223344999999987 2345899999999999999999999998764 233222222 11111 23
Q ss_pred HHHHHHHhhHhcCCchhHHHHHH-----------HhcccccCCcccHHHHHHHHhhh--ccccccc---CHHHHHHHHHH
Q 047163 356 KVYTSIELSYNLLASKEAKSLFR-----------LCGLYNEGHAIQVASILRYGMGW--GLLENVY---TLEEARSRVHR 419 (658)
Q Consensus 356 ~i~~~l~~sy~~L~~~~~k~~fl-----------~~~~fp~~~~i~~~~li~~w~a~--g~i~~~~---~~~~~~~~~~~ 419 (658)
.+..++.+||+.||++ +|.||+ |||+||+++.|+ +++|+|+ ||+.... ..+++. +
T Consensus 362 ~i~~~l~~Sy~~L~~~-lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~~~~----~ 432 (549)
T 2a5y_B 362 GVECITPYSYKSLAMA-LQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDDEVA----D 432 (549)
T ss_dssp TTCCCSSSSSSSHHHH-HHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCTHHHH----H
T ss_pred HHHHHHhcccccccHH-HHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCCHHHHH----H
Confidence 4778899999999988 999999 999999999999 7899999 9997432 233332 2
Q ss_pred HHHHHHHccccccCC--CCCceeecHHHHHHHHHHHccCc
Q 047163 420 LIDNLKSSCLLLDGD--AKDEAKMYDVIHVVAVSIATGEH 457 (658)
Q Consensus 420 ~~~~L~~~~ll~~~~--~~~~~~~h~lv~~~~~~~~~~~~ 457 (658)
++++|+++||++... ....|+|||+||+||++++.+++
T Consensus 433 ~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~ 472 (549)
T 2a5y_B 433 RLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQT 472 (549)
T ss_dssp HHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHH
T ss_pred HHHHHHHcCCeeEecCCCceEEEeChHHHHHHHHHHHHHH
Confidence 799999999998753 34579999999999998887663
No 2
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=2.3e-34 Score=349.10 Aligned_cols=293 Identities=15% Similarity=0.189 Sum_probs=225.3
Q ss_pred CcccccccccchHHHHHHHHHHhc--cCCccEEEEEcCCCChHHHHHHHHHHHhhh-cc-CCCEEEEEEEcCCCC--HHH
Q 047163 149 MQVKDFEAFDSKMEVFQDVMEALK--DDKLNIIGVYGMGGVGKTTLVKQVAKQVME-DK-LFDKVVMAEVTQNPD--HHK 222 (658)
Q Consensus 149 ~~~~~~~~~~gr~~~~~~l~~~l~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~-~F~~~~wv~v~~~~~--~~~ 222 (658)
..|.....|+||++++++|.++|. ++++++|+|+||||+||||||+++|++... .. .|+.++|+++++..+ ...
T Consensus 118 ~~p~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 197 (1249)
T 3sfz_A 118 GVPQRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLM 197 (1249)
T ss_dssp TCCCCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHH
T ss_pred CCCCCCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHH
Confidence 345667789999999999999985 467899999999999999999999988643 33 456889999998643 344
Q ss_pred HHHHHHHhcCCCCC----CCCCHHHHHHHHHHHHhcCC--eEEEEEecCCcccCcccccCccc------CC-----Ccc-
Q 047163 223 IQDKLAFGLGMEFG----FNENMFQRASRLCERLKKEK--RLLIILDNIWIELEFDKIGIPSG------NV-----EKE- 284 (658)
Q Consensus 223 ~~~~i~~~l~~~~~----~~~~~~~~~~~l~~~l~~~k--~~LlVlDdv~~~~~~~~l~~~~~------~~-----~~~- 284 (658)
.+..++..+..... ......+....+...+. ++ ||||||||||+..+|..+..... .. ..+
T Consensus 198 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~-~~~~~~LlvlDd~~~~~~~~~~~~~~~ilvTtR~~~~~~~~~~~ 276 (1249)
T 3sfz_A 198 KLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLML-RKHPRSLLILDDVWDPWVLKAFDNQCQILLTTRDKSVTDSVMGP 276 (1249)
T ss_dssp HHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTS-SSSCSCEEEEESCCCHHHHTTTCSSCEEEEEESSTTTTTTCCSC
T ss_pred HHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHh-ccCCCEEEEEecCCCHHHHHhhcCCCEEEEEcCCHHHHHhhcCC
Confidence 46667666654322 23345556666666665 45 99999999999988877632210 00 000
Q ss_pred ------c-cccchhhHHhhhccC-----CccHHHHHHHHHcCCchhHHHHHHHHhccCChHHHHHHHHHHhcCCCCCCC-
Q 047163 285 ------R-TDARSRCTIILTKTS-----TIQPIADEIVEICGGLPVAVTTVANALKSKSLDIWKDALNQLRSSNPREID- 351 (658)
Q Consensus 285 ------~-~~~~~~~~~Lf~~~~-----~~~~~~~~i~~~c~glPLai~~~g~~L~~~~~~~w~~~l~~l~~~~~~~~~- 351 (658)
. .....+|++||...+ ..++.+++|+++|+|+||||+++|++|+.++ ..|..+++++.......+.
T Consensus 277 ~~~~~~~~~l~~~~a~~l~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~-~~~~~~l~~l~~~~~~~~~~ 355 (1249)
T 3sfz_A 277 KHVVPVESGLGREKGLEILSLFVNMKKEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP-NRWAYYLRQLQNKQFKRIRK 355 (1249)
T ss_dssp BCCEECCSSCCHHHHHHHHHHHHTSCSTTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS-SCHHHHHHHHHSCCCCCSSC
T ss_pred ceEEEecCCCCHHHHHHHHHHhhCCChhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh-hHHHHHHHHHhhhhhhhccc
Confidence 1 144556999998765 5678899999999999999999999999875 5799999988765533221
Q ss_pred ---chhHHHHHHHHhhHhcCCchhHHHHHHHhcccccCCcccHHHHHHHHhhhcccccccCHHHHHHHHHHHHHHHHHcc
Q 047163 352 ---GMDKKVYTSIELSYNLLASKEAKSLFRLCGLYNEGHAIQVASILRYGMGWGLLENVYTLEEARSRVHRLIDNLKSSC 428 (658)
Q Consensus 352 ---~~~~~i~~~l~~sy~~L~~~~~k~~fl~~~~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~~~~~L~~~~ 428 (658)
.....+..+|.+||+.||++ .|.||+|||+||+++.|+++.++.+|.+++ ....+++++|+++|
T Consensus 356 ~~~~~~~~~~~~l~~s~~~L~~~-~~~~~~~l~~f~~~~~i~~~~~~~~~~~~~------------~~~~~~l~~L~~~s 422 (1249)
T 3sfz_A 356 SSSYDYEALDEAMSISVEMLRED-IKDYYTDLSILQKDVKVPTKVLCVLWDLET------------EEVEDILQEFVNKS 422 (1249)
T ss_dssp TTCTTHHHHHHHHHHHHHTSCTT-THHHHHHGGGSCTTCCEEHHHHHHHHTCCH------------HHHHHHHHHHHHTT
T ss_pred ccccchHHHHHHHHHHHHhCCHH-HHHHHHHhCccCCCCeeCHHHHHHHhCCCH------------HHHHHHHHHHHhcc
Confidence 12357999999999999998 999999999999999999999999997653 23455799999999
Q ss_pred ccccCCC--CCceeecHHHHHHHHHHHccC
Q 047163 429 LLLDGDA--KDEAKMYDVIHVVAVSIATGE 456 (658)
Q Consensus 429 ll~~~~~--~~~~~~h~lv~~~~~~~~~~~ 456 (658)
|++.... ...|+||++||+|++..+.++
T Consensus 423 l~~~~~~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 423 LLFCNRNGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp SCEEEESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred ceEEecCCCceEEEecHHHHHHHHhhhhHH
Confidence 9986532 235999999999999987765
No 3
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=3e-33 Score=310.42 Aligned_cols=264 Identities=16% Similarity=0.151 Sum_probs=202.6
Q ss_pred ccchHHHHHHHHHHhcc-CCccEEEEEcCCCChHHHHHHHHHHHhhhccCCCE-EEEEEEcCCCCHHHHHHHHHHhcCC-
Q 047163 157 FDSKMEVFQDVMEALKD-DKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDK-VVMAEVTQNPDHHKIQDKLAFGLGM- 233 (658)
Q Consensus 157 ~~gr~~~~~~l~~~l~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~-~~wv~v~~~~~~~~~~~~i~~~l~~- 233 (658)
.+||+.++++|.++|.. +..++|+|+||||+||||||+++|++.+...+|+. ++|+++++.++...++..|+..++.
T Consensus 130 ~VGRe~eLeeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL~~i 209 (1221)
T 1vt4_I 130 NVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQI 209 (1221)
T ss_dssp CCCCHHHHHHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHhccCCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHhhc
Confidence 48999999999999874 56899999999999999999999998776677985 9999999999988888887764321
Q ss_pred --CCCCC----C----CHHHHHHHHHHHHh--cCCeEEEEEecCCcccCcccccCcccC----CCc-------c------
Q 047163 234 --EFGFN----E----NMFQRASRLCERLK--KEKRLLIILDNIWIELEFDKIGIPSGN----VEK-------E------ 284 (658)
Q Consensus 234 --~~~~~----~----~~~~~~~~l~~~l~--~~k~~LlVlDdv~~~~~~~~l~~~~~~----~~~-------~------ 284 (658)
..... . ...+....+.+.+. .+||+||||||||+.++|+.+.....- ... +
T Consensus 210 ~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f~pGSRILVTTRd~~Va~~l~g~~vy~L 289 (1221)
T 1vt4_I 210 DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHI 289 (1221)
T ss_dssp CSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHHHSSCCEEEECSCSHHHHHHHHHSSCEE
T ss_pred CcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhhCCCeEEEEeccChHHHHhcCCCeEEEe
Confidence 11100 1 11233445555552 369999999999998888765311100 000 0
Q ss_pred c------cccchhhHHhhhccC--CccHHHHHHHHHcCCchhHHHHHHHHhccC--ChHHHHHHHHHHhcCCCCCCCchh
Q 047163 285 R------TDARSRCTIILTKTS--TIQPIADEIVEICGGLPVAVTTVANALKSK--SLDIWKDALNQLRSSNPREIDGMD 354 (658)
Q Consensus 285 ~------~~~~~~~~~Lf~~~~--~~~~~~~~i~~~c~glPLai~~~g~~L~~~--~~~~w~~~l~~l~~~~~~~~~~~~ 354 (658)
. .....+||+||.+.. ...++..++ |+|+||||+++|+.|+.+ +.++|... ..
T Consensus 290 eL~d~dL~LS~eEA~eLF~~~~g~~~eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~eeW~~~--------------~~ 352 (1221)
T 1vt4_I 290 SLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREV---LTTNPRRLSIIAESIRDGLATWDNWKHV--------------NC 352 (1221)
T ss_dssp EECSSSSCCCHHHHHHHHHHHHCCCTTTHHHHH---CCCCHHHHHHHHHHHHHSCSSHHHHHHC--------------SC
T ss_pred cCccccCCcCHHHHHHHHHHHcCCCHHHHHHHH---hCCCHHHHHHHHHHHhCCCCCHHHHhcC--------------Ch
Confidence 1 234456999998875 334555554 999999999999999988 67788653 13
Q ss_pred HHHHHHHHhhHhcCCchhH-HHHHHHhcccccCCcccHHHHHHHHhhhcccccccCHHHHHHHHHHHHHHHHHccccccC
Q 047163 355 KKVYTSIELSYNLLASKEA-KSLFRLCGLYNEGHAIQVASILRYGMGWGLLENVYTLEEARSRVHRLIDNLKSSCLLLDG 433 (658)
Q Consensus 355 ~~i~~~l~~sy~~L~~~~~-k~~fl~~~~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~~~~~L~~~~ll~~~ 433 (658)
..+..+|.+||+.||++ . |.||++||+||+++.|+.+.++.+|+++|. + ....++++|+++||++..
T Consensus 353 ~~I~aaLelSYd~Lp~e-elK~cFL~LAIFPed~~I~~elLa~LW~aeGe-------e----dAe~~L~eLvdRSLLq~d 420 (1221)
T 1vt4_I 353 DKLTTIIESSLNVLEPA-EYRKMFDRLSVFPPSAHIPTILLSLIWFDVIK-------S----DVMVVVNKLHKYSLVEKQ 420 (1221)
T ss_dssp HHHHHHHHHHHHHSCTT-HHHHHHHHTTSSCTTSCEEHHHHHHHHCSSCS-------H----HHHHHHHHHHTSSSSSBC
T ss_pred hHHHHHHHHHHHhCCHH-HHHHHHHHHhCCCCCCCCCHHHHHHHhcCCCH-------H----HHHHHHHHHHhhCCEEEe
Confidence 57999999999999998 8 999999999999999999999999999871 1 244589999999999986
Q ss_pred CCCCceeecHHHHHHH
Q 047163 434 DAKDEAKMYDVIHVVA 449 (658)
Q Consensus 434 ~~~~~~~~h~lv~~~~ 449 (658)
+....|+||||+++++
T Consensus 421 ~~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 421 PKESTISIPSIYLELK 436 (1221)
T ss_dssp SSSSEEBCCCHHHHHH
T ss_pred CCCCEEEehHHHHHHh
Confidence 5567899999999965
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.97 E-value=3.7e-30 Score=286.72 Aligned_cols=289 Identities=16% Similarity=0.214 Sum_probs=214.4
Q ss_pred ccccccccchHHHHHHHHHHhc--cCCccEEEEEcCCCChHHHHHHHHHHHhhh-ccCC-CEEEEEEEcCCCCHHHHHHH
Q 047163 151 VKDFEAFDSKMEVFQDVMEALK--DDKLNIIGVYGMGGVGKTTLVKQVAKQVME-DKLF-DKVVMAEVTQNPDHHKIQDK 226 (658)
Q Consensus 151 ~~~~~~~~gr~~~~~~l~~~l~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~~F-~~~~wv~v~~~~~~~~~~~~ 226 (658)
|.....|+||+.+++.|.+++. .++.++|+|+||||+||||||+.++++... ..+| +.++|++++.. +...+...
T Consensus 120 P~~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~~~~~ 198 (591)
T 1z6t_A 120 PQRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGLLMK 198 (591)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHHHHHH
T ss_pred CCCCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-chHHHHHH
Confidence 4556779999999999999987 456789999999999999999999987654 4668 58999999876 33333333
Q ss_pred H---HHhcCCC----CCCCCCHHHHHHHHHHHHhc-CCeEEEEEecCCcccCcccccCccc------C-----CCcc---
Q 047163 227 L---AFGLGME----FGFNENMFQRASRLCERLKK-EKRLLIILDNIWIELEFDKIGIPSG------N-----VEKE--- 284 (658)
Q Consensus 227 i---~~~l~~~----~~~~~~~~~~~~~l~~~l~~-~k~~LlVlDdv~~~~~~~~l~~~~~------~-----~~~~--- 284 (658)
+ +..++.. .....+.......+...+.. .+++||||||+|+..++..+..... . ...+
T Consensus 199 l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l~~~~~ilvTsR~~~~~~~~~~~~~ 278 (591)
T 1z6t_A 199 LQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAFDSQCQILLTTRDKSVTDSVMGPKY 278 (591)
T ss_dssp HHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHTTCSSCEEEEEESCGGGGTTCCSCEE
T ss_pred HHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHHhcCCCeEEEECCCcHHHHhcCCCce
Confidence 3 3444421 11133445566667777763 2789999999998876665421110 0 0001
Q ss_pred -----ccccchhhHHhhhccC-----CccHHHHHHHHHcCCchhHHHHHHHHhccCChHHHHHHHHHHhcCCCCCC----
Q 047163 285 -----RTDARSRCTIILTKTS-----TIQPIADEIVEICGGLPVAVTTVANALKSKSLDIWKDALNQLRSSNPREI---- 350 (658)
Q Consensus 285 -----~~~~~~~~~~Lf~~~~-----~~~~~~~~i~~~c~glPLai~~~g~~L~~~~~~~w~~~l~~l~~~~~~~~---- 350 (658)
......++++||.+.+ ...+.+.+|+++|+|+||||..+|+.++..+ ..|..+++.+.......+
T Consensus 279 ~v~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~-~~w~~~l~~l~~~~~~~~~~~~ 357 (591)
T 1z6t_A 279 VVPVESSLGKEKGLEILSLFVNMKKADLPEQAHSIIKECKGSPLVVSLIGALLRDFP-NRWEYYLKQLQNKQFKRIRKSS 357 (591)
T ss_dssp EEECCSSCCHHHHHHHHHHHHTSCGGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST-TCHHHHHHHHHSCCCCCSSCCC
T ss_pred EeecCCCCCHHHHHHHHHHHhCCCcccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc-hhHHHHHHHHHHhHHHHhhhcc
Confidence 1233345999998766 3467899999999999999999999998773 479999998876543221
Q ss_pred CchhHHHHHHHHhhHhcCCchhHHHHHHHhcccccCCcccHHHHHHHHhhhcccccccCHHHHHHHHHHHHHHHHHcccc
Q 047163 351 DGMDKKVYTSIELSYNLLASKEAKSLFRLCGLYNEGHAIQVASILRYGMGWGLLENVYTLEEARSRVHRLIDNLKSSCLL 430 (658)
Q Consensus 351 ~~~~~~i~~~l~~sy~~L~~~~~k~~fl~~~~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~~~~~L~~~~ll 430 (658)
......+..++..||+.||++ .+.||++||+||+++.|+.+.+..+|.+++ + .+..++++|+++|++
T Consensus 358 ~~~~~~l~~~l~~s~~~L~~~-~~~~l~~la~f~~~~~i~~~~l~~l~~~~~--------~----~~~~~l~~L~~~~Ll 424 (591)
T 1z6t_A 358 SYDYEALDEAMSISVEMLRED-IKDYYTDLSILQKDVKVPTKVLCILWDMET--------E----EVEDILQEFVNKSLL 424 (591)
T ss_dssp SSCCHHHHHHHHHHHHTSCTT-THHHHHHGGGCCTTCCEEHHHHHHHHTCCH--------H----HHHHHHHHHHHTTSS
T ss_pred ccchHHHHHHHHHHHHhCCHH-HHHHHHHccccCCCCccCHHHHHHHhccCH--------H----HHHHHHHHHHhCcCe
Confidence 122357999999999999998 999999999999999999999999997542 1 234578999999999
Q ss_pred ccC--CCCCceeecHHHHHHHHHHHc
Q 047163 431 LDG--DAKDEAKMYDVIHVVAVSIAT 454 (658)
Q Consensus 431 ~~~--~~~~~~~~h~lv~~~~~~~~~ 454 (658)
+.. +....|+||+++|++++....
T Consensus 425 ~~~~~~~~~~~~~H~lv~~~~~~~~~ 450 (591)
T 1z6t_A 425 FCDRNGKSFRYYLHDLQVDFLTEKNC 450 (591)
T ss_dssp EEEEETTEEEEECCHHHHHHHHHHTG
T ss_pred EEecCCCccEEEEcHHHHHHHHhhhh
Confidence 754 233479999999999998743
No 5
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.75 E-value=7.1e-18 Score=172.72 Aligned_cols=172 Identities=24% Similarity=0.299 Sum_probs=134.1
Q ss_pred CceEEeccCCCCCcCCCcc-CCCCCceEEEecCCCCCCccchHHhcCCCCCcEEEccCCCCC-CCcccccc---------
Q 047163 478 GPIAISLPHRDIQELPERL-QCPNLQLFLFFGKGYGPMQISDLFFEGTKELKDLSLTRIPFS-SLPSSLGS--------- 546 (658)
Q Consensus 478 ~~~~l~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~lp~~i~~--------- 546 (658)
+++++.+.+|.+..+|..+ .+++|+.|++++|... .+|.. +.++++|++|++++|.+. .+|..++.
T Consensus 105 ~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~--~lp~~-l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~ 181 (328)
T 4fcg_A 105 HLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLR--ALPAS-IASLNRLRELSIRACPELTELPEPLASTDASGEHQG 181 (328)
T ss_dssp TCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCC--CCCGG-GGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEE
T ss_pred CCCEEECCCCCccchhHHHhccCCCCEEECCCCccc--cCcHH-HhcCcCCCEEECCCCCCccccChhHhhccchhhhcc
Confidence 7788888888887777644 7788888888888633 56654 677888888888886543 66766554
Q ss_pred CCCcceEEccCCCCCCc-hhhhccCCCcEEEccCccCCccchhhcCCCCCcEEcccCcccccccChhhhcCCCCCcEEEc
Q 047163 547 LINLGTLCLEDCPRNDI-AILRQLKKLEILRLRHSYTERLPLEIGQLTRLRLLDLSNCWRLKVIAPNVISKLSRLEELYM 625 (658)
Q Consensus 547 l~~L~~L~L~~~~~~~l-~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l 625 (658)
+++|++|++++|.+..+ ..++.+++|++|++++|.+..+|..++++++|++|++++| .+....+..++++++|++|++
T Consensus 182 l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n-~~~~~~p~~~~~l~~L~~L~L 260 (328)
T 4fcg_A 182 LVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGC-TALRNYPPIFGGRAPLKRLIL 260 (328)
T ss_dssp STTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTC-TTCCBCCCCTTCCCCCCEEEC
T ss_pred CCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCC-cchhhhHHHhcCCCCCCEEEC
Confidence 88888888888888776 6788888888888888888888888888888888888888 444444444788888888888
Q ss_pred ccCCCCcccccCCCccchhhcCCCCccccCCCC
Q 047163 626 GNSFPKWDKVEGGSNASLAELKGLSKLDTGHNR 658 (658)
Q Consensus 626 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~N~ 658 (658)
++|. +.+.+|..+..+++|+.|++++|+
T Consensus 261 ~~n~-----~~~~~p~~~~~l~~L~~L~L~~n~ 288 (328)
T 4fcg_A 261 KDCS-----NLLTLPLDIHRLTQLEKLDLRGCV 288 (328)
T ss_dssp TTCT-----TCCBCCTTGGGCTTCCEEECTTCT
T ss_pred CCCC-----chhhcchhhhcCCCCCEEeCCCCC
Confidence 8853 677888889999999999999874
No 6
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.74 E-value=1.8e-17 Score=169.65 Aligned_cols=173 Identities=23% Similarity=0.321 Sum_probs=143.5
Q ss_pred CceEEeccCCCCCcCCCcc-CCCCCceEEEecCCCCCCccchHH--------hcCCCCCcEEEccCCCCCCCccccccCC
Q 047163 478 GPIAISLPHRDIQELPERL-QCPNLQLFLFFGKGYGPMQISDLF--------FEGTKELKDLSLTRIPFSSLPSSLGSLI 548 (658)
Q Consensus 478 ~~~~l~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~--------~~~~~~L~~L~l~~~~~~~lp~~i~~l~ 548 (658)
+++.+.+.+|.+..+|..+ .+++|+.|++++|. ....+|..+ +.++++|++|++++|.+..+|..++.++
T Consensus 128 ~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~-~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~ 206 (328)
T 4fcg_A 128 GLETLTLARNPLRALPASIASLNRLRELSIRACP-ELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQ 206 (328)
T ss_dssp TCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEET-TCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCT
T ss_pred CCCEEECCCCccccCcHHHhcCcCCCEEECCCCC-CccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCC
Confidence 7899999999888888655 78999999999876 334455543 3458899999999999999999999999
Q ss_pred CcceEEccCCCCCCc-hhhhccCCCcEEEccCc-cCCccchhhcCCCCCcEEcccCcccccccChhhhcCCCCCcEEEcc
Q 047163 549 NLGTLCLEDCPRNDI-AILRQLKKLEILRLRHS-YTERLPLEIGQLTRLRLLDLSNCWRLKVIAPNVISKLSRLEELYMG 626 (658)
Q Consensus 549 ~L~~L~L~~~~~~~l-~~~~~l~~L~~L~l~~~-~~~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~ 626 (658)
+|++|+|++|.+..+ +.++.+++|++|++++| ..+.+|..++++++|++|++++|.....+|.. ++++++|++|+++
T Consensus 207 ~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~-~~~l~~L~~L~L~ 285 (328)
T 4fcg_A 207 NLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLD-IHRLTQLEKLDLR 285 (328)
T ss_dssp TCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTT-GGGCTTCCEEECT
T ss_pred CCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchh-hhcCCCCCEEeCC
Confidence 999999999998887 77889999999999997 45667888999999999999998555555554 8899999999999
Q ss_pred cCCCCcccccCCCccchhhcCCCCccccCCC
Q 047163 627 NSFPKWDKVEGGSNASLAELKGLSKLDTGHN 657 (658)
Q Consensus 627 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~N 657 (658)
+|. +.+.+|..+.+|++|+.+++..|
T Consensus 286 ~n~-----~~~~iP~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 286 GCV-----NLSRLPSLIAQLPANCIILVPPH 311 (328)
T ss_dssp TCT-----TCCCCCGGGGGSCTTCEEECCGG
T ss_pred CCC-----chhhccHHHhhccCceEEeCCHH
Confidence 853 78889999999999999887654
No 7
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.72 E-value=8.3e-17 Score=160.15 Aligned_cols=173 Identities=24% Similarity=0.335 Sum_probs=152.1
Q ss_pred CceEEeccCCCCCcCCC--ccCCCCCceEEEecCCCCCCccchHHhcCCCCCcEEEccCCCCCCCcc-ccccCCCcceEE
Q 047163 478 GPIAISLPHRDIQELPE--RLQCPNLQLFLFFGKGYGPMQISDLFFEGTKELKDLSLTRIPFSSLPS-SLGSLINLGTLC 554 (658)
Q Consensus 478 ~~~~l~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~ 554 (658)
.+++|.+.+|.+..++. ...+++|+.|.+.+|. ...++...|..+++|++|++++|.+..+|. .+..+++|++|+
T Consensus 38 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~--l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 115 (270)
T 2o6q_A 38 DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNK--LQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELR 115 (270)
T ss_dssp TCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSC--CSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEE
T ss_pred CCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCc--cCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEE
Confidence 78999999999988875 3489999999999996 456788888999999999999999998875 467899999999
Q ss_pred ccCCCCCCc--hhhhccCCCcEEEccCccCCccchh-hcCCCCCcEEcccCcccccccChhhhcCCCCCcEEEcccCCCC
Q 047163 555 LEDCPRNDI--AILRQLKKLEILRLRHSYTERLPLE-IGQLTRLRLLDLSNCWRLKVIAPNVISKLSRLEELYMGNSFPK 631 (658)
Q Consensus 555 L~~~~~~~l--~~~~~l~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~~ 631 (658)
+++|.+..+ ..+..+++|++|++++|.+..+|.. +..+++|++|++++| .++.+++..+.++++|++|++++|.
T Consensus 116 l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~-- 192 (270)
T 2o6q_A 116 LDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNN-QLKRVPEGAFDKLTELKTLKLDNNQ-- 192 (270)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC--
T ss_pred CCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCC-cCcEeChhHhccCCCcCEEECCCCc--
Confidence 999999887 4588999999999999999999865 789999999999999 8999998878999999999999954
Q ss_pred cccccCCCccchhhcCCCCccccCCCC
Q 047163 632 WDKVEGGSNASLAELKGLSKLDTGHNR 658 (658)
Q Consensus 632 ~~~~~~~~~~~l~~l~~L~~L~l~~N~ 658 (658)
+++..+..+..+++|+.|++++|.
T Consensus 193 ---l~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 193 ---LKRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp ---CSCCCTTTTTTCTTCCEEECCSSC
T ss_pred ---CCcCCHHHhccccCCCEEEecCCC
Confidence 666666678899999999999984
No 8
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.72 E-value=9.5e-17 Score=157.85 Aligned_cols=172 Identities=22% Similarity=0.354 Sum_probs=141.5
Q ss_pred CceEEeccCCCCCcCCCccCCCCCceEEEecCCCCCCccchHHhcCCCCCcEEEccCCCCCCCcc-ccccCCCcceEEcc
Q 047163 478 GPIAISLPHRDIQELPERLQCPNLQLFLFFGKGYGPMQISDLFFEGTKELKDLSLTRIPFSSLPS-SLGSLINLGTLCLE 556 (658)
Q Consensus 478 ~~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~L~ 556 (658)
..+++.+.++.+..+|.... ++++.|.+.+|. ...++...+.++++|++|++++|.+..++. .+..+++|++|+|+
T Consensus 15 ~~~~l~~~~~~l~~~p~~~~-~~l~~L~L~~n~--l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGIP-ADTEKLDLQSTG--LATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGTEEECTTCCCSSCCSCCC-TTCCEEECTTSC--CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCeEEecCCCCccccCCCCC-CCCCEEEccCCC--cCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 45678888888888887654 688999999886 444555567888999999999999887654 47888999999999
Q ss_pred CCCCCCc--hhhhccCCCcEEEccCccCCccchh-hcCCCCCcEEcccCcccccccChhhhcCCCCCcEEEcccCCCCcc
Q 047163 557 DCPRNDI--AILRQLKKLEILRLRHSYTERLPLE-IGQLTRLRLLDLSNCWRLKVIAPNVISKLSRLEELYMGNSFPKWD 633 (658)
Q Consensus 557 ~~~~~~l--~~~~~l~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~~~~ 633 (658)
+|.+..+ ..+..+++|++|++++|.+..+|.. +.++++|++|++++| .++.+++..++.+++|++|++++|
T Consensus 92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N----- 165 (251)
T 3m19_A 92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTN-QLQSIPAGAFDKLTNLQTLSLSTN----- 165 (251)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-----
T ss_pred CCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCC-cCCccCHHHcCcCcCCCEEECCCC-----
Confidence 9988877 4678889999999999988888765 578899999999999 888888877888999999999884
Q ss_pred cccCCCccchhhcCCCCccccCCCC
Q 047163 634 KVEGGSNASLAELKGLSKLDTGHNR 658 (658)
Q Consensus 634 ~~~~~~~~~l~~l~~L~~L~l~~N~ 658 (658)
.+++..+..+..+++|+.|++++|.
T Consensus 166 ~l~~~~~~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 166 QLQSVPHGAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred cCCccCHHHHhCCCCCCEEEeeCCc
Confidence 4776667788889999999998884
No 9
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.71 E-value=1.5e-16 Score=158.48 Aligned_cols=171 Identities=25% Similarity=0.327 Sum_probs=144.1
Q ss_pred CceEEeccCCCCCcCCCccCCCCCceEEEecCCCCCCccchHHhcCCCCCcEEEccCCCCCCCccc-cccCCCcceEEcc
Q 047163 478 GPIAISLPHRDIQELPERLQCPNLQLFLFFGKGYGPMQISDLFFEGTKELKDLSLTRIPFSSLPSS-LGSLINLGTLCLE 556 (658)
Q Consensus 478 ~~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~-i~~l~~L~~L~L~ 556 (658)
+++.+.+.++.+..++....+++|+.|.+++|... .++ .+..+++|++|++++|.+..+|.. +..+++|++|+++
T Consensus 42 ~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~--~~~--~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 117 (272)
T 3rfs_A 42 SIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLH--DIS--ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLV 117 (272)
T ss_dssp TCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCC--CCG--GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred ceeeeeeCCCCcccccccccCCCCcEEECCCCCCC--Cch--hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECC
Confidence 78899999998888887778999999999998743 333 367889999999999999877654 6889999999999
Q ss_pred CCCCCCc--hhhhccCCCcEEEccCccCCccchh-hcCCCCCcEEcccCcccccccChhhhcCCCCCcEEEcccCCCCcc
Q 047163 557 DCPRNDI--AILRQLKKLEILRLRHSYTERLPLE-IGQLTRLRLLDLSNCWRLKVIAPNVISKLSRLEELYMGNSFPKWD 633 (658)
Q Consensus 557 ~~~~~~l--~~~~~l~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~~~~ 633 (658)
+|.+..+ ..++.+++|++|++++|.+..+|.. ++++++|++|++++| .++.+++..++.+++|++|++++|.
T Consensus 118 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~N~---- 192 (272)
T 3rfs_A 118 ENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYN-QLQSLPEGVFDKLTQLKDLRLYQNQ---- 192 (272)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC----
T ss_pred CCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCC-CcCccCHHHhcCCccCCEEECCCCc----
Confidence 9998887 3478899999999999988888754 578999999999999 8888888877889999999999853
Q ss_pred cccCCCccchhhcCCCCccccCCCC
Q 047163 634 KVEGGSNASLAELKGLSKLDTGHNR 658 (658)
Q Consensus 634 ~~~~~~~~~l~~l~~L~~L~l~~N~ 658 (658)
+++..+..+..+++|+.|++++|.
T Consensus 193 -l~~~~~~~~~~l~~L~~L~l~~N~ 216 (272)
T 3rfs_A 193 -LKSVPDGVFDRLTSLQYIWLHDNP 216 (272)
T ss_dssp -CSCCCTTTTTTCTTCCEEECCSSC
T ss_pred -CCccCHHHHhCCcCCCEEEccCCC
Confidence 777777778899999999999884
No 10
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.70 E-value=1.2e-16 Score=160.43 Aligned_cols=174 Identities=22% Similarity=0.264 Sum_probs=109.0
Q ss_pred CceEEeccCCCCCcCCC-c-cCCCCCceEEEecCCCCCCccchHHhcCCCCCcEEEccCCCCCCC-ccccccCCCcceEE
Q 047163 478 GPIAISLPHRDIQELPE-R-LQCPNLQLFLFFGKGYGPMQISDLFFEGTKELKDLSLTRIPFSSL-PSSLGSLINLGTLC 554 (658)
Q Consensus 478 ~~~~l~l~~~~~~~~~~-~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~ 554 (658)
+++.+.+.+|.+..+++ . ..+++|+.|++++|. ....+++..+..+++|++|++++|.+..+ |..+..+++|++|+
T Consensus 57 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 135 (285)
T 1ozn_A 57 NLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA-QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLY 135 (285)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT-TCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCEEECCCCccceeCHhhcCCccCCCEEeCCCCC-CccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEE
Confidence 55666666665555422 2 255666666666663 13334334456666677777776666655 44566666777777
Q ss_pred ccCCCCCCc--hhhhccCCCcEEEccCccCCccch-hhcCCCCCcEEcccCcccccccChhhhcCCCCCcEEEcccCCCC
Q 047163 555 LEDCPRNDI--AILRQLKKLEILRLRHSYTERLPL-EIGQLTRLRLLDLSNCWRLKVIAPNVISKLSRLEELYMGNSFPK 631 (658)
Q Consensus 555 L~~~~~~~l--~~~~~l~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~~ 631 (658)
+++|.+..+ ..+..+++|++|++++|.+..+|. .+.++++|++|++++| .++.+++..++.+++|+.|++++|
T Consensus 136 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n--- 211 (285)
T 1ozn_A 136 LQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQN-RVAHVHPHAFRDLGRLMTLYLFAN--- 211 (285)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS---
T ss_pred CCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCC-cccccCHhHccCcccccEeeCCCC---
Confidence 777766665 336667777777777776666654 3666777777777777 566665555667777777777764
Q ss_pred cccccCCCccchhhcCCCCccccCCCC
Q 047163 632 WDKVEGGSNASLAELKGLSKLDTGHNR 658 (658)
Q Consensus 632 ~~~~~~~~~~~l~~l~~L~~L~l~~N~ 658 (658)
.+++..+..+..+++|+.|++++|.
T Consensus 212 --~l~~~~~~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 212 --NLSALPTEALAPLRALQYLRLNDNP 236 (285)
T ss_dssp --CCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred --cCCcCCHHHcccCcccCEEeccCCC
Confidence 3555555567777777777777763
No 11
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.69 E-value=2.7e-16 Score=157.85 Aligned_cols=173 Identities=24% Similarity=0.326 Sum_probs=152.0
Q ss_pred CceEEeccCCCCCcCCCc--cCCCCCceEEEecCCCCCCccchHHhcCCCCCcEEEccCCC-CCCC-ccccccCCCcceE
Q 047163 478 GPIAISLPHRDIQELPER--LQCPNLQLFLFFGKGYGPMQISDLFFEGTKELKDLSLTRIP-FSSL-PSSLGSLINLGTL 553 (658)
Q Consensus 478 ~~~~l~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~l-p~~i~~l~~L~~L 553 (658)
+++++.+++|.+..++.. ..+++|+.|.+.+|. ...++...+..+++|++|++++|. +..+ |..+..+++|++|
T Consensus 33 ~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~--l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L 110 (285)
T 1ozn_A 33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNV--LARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL 110 (285)
T ss_dssp TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC--CCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred CceEEEeeCCcCCccCHHHcccCCCCCEEECCCCc--cceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEE
Confidence 799999999999887753 388999999999996 445555567899999999999997 8877 6778999999999
Q ss_pred EccCCCCCCc--hhhhccCCCcEEEccCccCCccch-hhcCCCCCcEEcccCcccccccChhhhcCCCCCcEEEcccCCC
Q 047163 554 CLEDCPRNDI--AILRQLKKLEILRLRHSYTERLPL-EIGQLTRLRLLDLSNCWRLKVIAPNVISKLSRLEELYMGNSFP 630 (658)
Q Consensus 554 ~L~~~~~~~l--~~~~~l~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~ 630 (658)
++++|.+..+ ..+..+++|++|++++|.+..+|. .++++++|++|++++| .++.+++..+..+++|++|++++|.
T Consensus 111 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~- 188 (285)
T 1ozn_A 111 HLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGN-RISSVPERAFRGLHSLDRLLLHQNR- 188 (285)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSC-
T ss_pred ECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCC-cccccCHHHhcCccccCEEECCCCc-
Confidence 9999998887 568899999999999999999875 4889999999999999 8999998778999999999999954
Q ss_pred CcccccCCCccchhhcCCCCccccCCCC
Q 047163 631 KWDKVEGGSNASLAELKGLSKLDTGHNR 658 (658)
Q Consensus 631 ~~~~~~~~~~~~l~~l~~L~~L~l~~N~ 658 (658)
+++..|..+..+++|+.|++++|+
T Consensus 189 ----l~~~~~~~~~~l~~L~~L~l~~n~ 212 (285)
T 1ozn_A 189 ----VAHVHPHAFRDLGRLMTLYLFANN 212 (285)
T ss_dssp ----CCEECTTTTTTCTTCCEEECCSSC
T ss_pred ----ccccCHhHccCcccccEeeCCCCc
Confidence 777778899999999999999984
No 12
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.68 E-value=4.9e-16 Score=154.52 Aligned_cols=172 Identities=22% Similarity=0.332 Sum_probs=150.3
Q ss_pred CceEEeccCCCCCcCCCccCCCCCceEEEecCCCCCCccchHHhcCCCCCcEEEccCCCCCCCcccc-ccCCCcceEEcc
Q 047163 478 GPIAISLPHRDIQELPERLQCPNLQLFLFFGKGYGPMQISDLFFEGTKELKDLSLTRIPFSSLPSSL-GSLINLGTLCLE 556 (658)
Q Consensus 478 ~~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~i-~~l~~L~~L~L~ 556 (658)
..+.+.+.++.+..+|.... ++++.|.+++|. ...++...|.++++|++|++++|.+..+|..+ ..+++|++|+++
T Consensus 17 ~~~~l~~~~~~l~~ip~~~~-~~l~~L~l~~n~--l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNIP-ADTKKLDLQSNK--LSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTTEEECTTSCCSSCCSCCC-TTCSEEECCSSC--CSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred CCCEEEccCCCCCccCCCCC-CCCCEEECcCCC--CCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence 56788899999988887554 789999999996 45566666889999999999999999988764 789999999999
Q ss_pred CCCCCCc--hhhhccCCCcEEEccCccCCccch-hhcCCCCCcEEcccCcccccccChhhhcCCCCCcEEEcccCCCCcc
Q 047163 557 DCPRNDI--AILRQLKKLEILRLRHSYTERLPL-EIGQLTRLRLLDLSNCWRLKVIAPNVISKLSRLEELYMGNSFPKWD 633 (658)
Q Consensus 557 ~~~~~~l--~~~~~l~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~~~~ 633 (658)
+|.+..+ ..+..+++|++|++++|.+..+|. .++++++|++|++++| .++.+++..++.+++|++|++++|.
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~---- 168 (270)
T 2o6q_A 94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYN-ELQSLPKGVFDKLTSLKELRLYNNQ---- 168 (270)
T ss_dssp SSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC----
T ss_pred CCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCC-cCCccCHhHccCCcccceeEecCCc----
Confidence 9999887 467899999999999999998874 5789999999999999 8999998878999999999999854
Q ss_pred cccCCCccchhhcCCCCccccCCCC
Q 047163 634 KVEGGSNASLAELKGLSKLDTGHNR 658 (658)
Q Consensus 634 ~~~~~~~~~l~~l~~L~~L~l~~N~ 658 (658)
+++..+..+..+++|+.|++++|+
T Consensus 169 -l~~~~~~~~~~l~~L~~L~L~~N~ 192 (270)
T 2o6q_A 169 -LKRVPEGAFDKLTELKTLKLDNNQ 192 (270)
T ss_dssp -CSCCCTTTTTTCTTCCEEECCSSC
T ss_pred -CcEeChhHhccCCCcCEEECCCCc
Confidence 676667778999999999999984
No 13
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.68 E-value=3.5e-16 Score=157.11 Aligned_cols=170 Identities=17% Similarity=0.129 Sum_probs=141.2
Q ss_pred CceEEeccCCCCCcCCC--ccCCCCCceEEEecCCCCCCccchHHhcCCCCCcEEEccCCCCCCCccccccCCCcceEEc
Q 047163 478 GPIAISLPHRDIQELPE--RLQCPNLQLFLFFGKGYGPMQISDLFFEGTKELKDLSLTRIPFSSLPSSLGSLINLGTLCL 555 (658)
Q Consensus 478 ~~~~l~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~L 555 (658)
+++.|.+.+|.+..++. ...+++|+.|.+++|.. ..++. ...+++|++|++++|.+..+|..+..+++|++|++
T Consensus 32 ~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l--~~~~~--~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l 107 (290)
T 1p9a_G 32 DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL--TKLQV--DGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDV 107 (290)
T ss_dssp TCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCC--CEEEC--CSCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEEC
T ss_pred CCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCcc--CcccC--CCCCCcCCEEECCCCcCCcCchhhccCCCCCEEEC
Confidence 78888888888877653 33788999999988863 33443 26788999999999999999988888999999999
Q ss_pred cCCCCCCc--hhhhccCCCcEEEccCccCCccchh-hcCCCCCcEEcccCcccccccChhhhcCCCCCcEEEcccCCCCc
Q 047163 556 EDCPRNDI--AILRQLKKLEILRLRHSYTERLPLE-IGQLTRLRLLDLSNCWRLKVIAPNVISKLSRLEELYMGNSFPKW 632 (658)
Q Consensus 556 ~~~~~~~l--~~~~~l~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~~~ 632 (658)
++|.+..+ ..+..+++|++|++++|.+..+|.. +..+++|+.|++++| .++.+|+..+.++++|++|++++|.
T Consensus 108 ~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~L~~N~--- 183 (290)
T 1p9a_G 108 SFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN-NLTELPAGLLNGLENLDTLLLQENS--- 183 (290)
T ss_dssp CSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS-CCSCCCTTTTTTCTTCCEEECCSSC---
T ss_pred CCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCC-cCCccCHHHhcCcCCCCEEECCCCc---
Confidence 99998887 4688899999999999998888754 578899999999999 8999998877889999999999854
Q ss_pred ccccCCCccchhhcCCCCccccCCCC
Q 047163 633 DKVEGGSNASLAELKGLSKLDTGHNR 658 (658)
Q Consensus 633 ~~~~~~~~~~l~~l~~L~~L~l~~N~ 658 (658)
++ .+|..+..+.+|+.|++++|.
T Consensus 184 --l~-~ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 184 --LY-TIPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp --CC-CCCTTTTTTCCCSEEECCSCC
T ss_pred --CC-ccChhhcccccCCeEEeCCCC
Confidence 55 677888888899999999884
No 14
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.68 E-value=6.5e-16 Score=156.66 Aligned_cols=164 Identities=22% Similarity=0.316 Sum_probs=123.3
Q ss_pred CceEEeccCCCCCcCCCccCCCCCceEEEecCCCCCCccchHHhcCCCCCcEEEccCCCCCCCccccccCCCcceEEccC
Q 047163 478 GPIAISLPHRDIQELPERLQCPNLQLFLFFGKGYGPMQISDLFFEGTKELKDLSLTRIPFSSLPSSLGSLINLGTLCLED 557 (658)
Q Consensus 478 ~~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~L~~ 557 (658)
+++.+.+++|.+..++....+++|+.|.+++|.. ..++ .+..+++|++|++++|.+..+|. +..+++|++|++++
T Consensus 64 ~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l--~~~~--~~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~ 138 (308)
T 1h6u_A 64 NLIGLELKDNQITDLAPLKNLTKITELELSGNPL--KNVS--AIAGLQSIKTLDLTSTQITDVTP-LAGLSNLQVLYLDL 138 (308)
T ss_dssp TCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCC--SCCG--GGTTCTTCCEEECTTSCCCCCGG-GTTCTTCCEEECCS
T ss_pred CCCEEEccCCcCCCChhHccCCCCCEEEccCCcC--CCch--hhcCCCCCCEEECCCCCCCCchh-hcCCCCCCEEECCC
Confidence 6778888888777777655778888888887763 3333 26677888888888888877764 77788888888888
Q ss_pred CCCCCchhhhccCCCcEEEccCccCCccchhhcCCCCCcEEcccCcccccccChhhhcCCCCCcEEEcccCCCCcccccC
Q 047163 558 CPRNDIAILRQLKKLEILRLRHSYTERLPLEIGQLTRLRLLDLSNCWRLKVIAPNVISKLSRLEELYMGNSFPKWDKVEG 637 (658)
Q Consensus 558 ~~~~~l~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~ 637 (658)
|.+..++.+..+++|++|++++|.+..+|. +.++++|++|++++| .++.+++ +..+++|++|++++|. +.+
T Consensus 139 n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~--l~~l~~L~~L~L~~N~-----l~~ 209 (308)
T 1h6u_A 139 NQITNISPLAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDN-KISDISP--LASLPNLIEVHLKNNQ-----ISD 209 (308)
T ss_dssp SCCCCCGGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCCGG--GGGCTTCCEEECTTSC-----CCB
T ss_pred CccCcCccccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCC-ccCcChh--hcCCCCCCEEEccCCc-----cCc
Confidence 887777667788888888888887777776 778888888888888 7777765 6778888888888753 543
Q ss_pred CCccchhhcCCCCccccCCC
Q 047163 638 GSNASLAELKGLSKLDTGHN 657 (658)
Q Consensus 638 ~~~~~l~~l~~L~~L~l~~N 657 (658)
.. .+..+++|+.|++++|
T Consensus 210 ~~--~l~~l~~L~~L~l~~N 227 (308)
T 1h6u_A 210 VS--PLANTSNLFIVTLTNQ 227 (308)
T ss_dssp CG--GGTTCTTCCEEEEEEE
T ss_pred cc--cccCCCCCCEEEccCC
Confidence 33 3778888888888776
No 15
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.66 E-value=7.8e-16 Score=154.66 Aligned_cols=164 Identities=27% Similarity=0.336 Sum_probs=134.5
Q ss_pred CceEEeccCCCCCcCCCccCCCCCceEEEecCCCCCCccchHHhcCCCCCcEEEccCCCCCCCccccccCCCcceEEccC
Q 047163 478 GPIAISLPHRDIQELPERLQCPNLQLFLFFGKGYGPMQISDLFFEGTKELKDLSLTRIPFSSLPSSLGSLINLGTLCLED 557 (658)
Q Consensus 478 ~~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~L~~ 557 (658)
+++.+.+.+|.+..++....+++|+.|.+++|. ...+++ +..+++|++|++++|.+..+|. +..+++|++|++++
T Consensus 47 ~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~--l~~~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~ 121 (291)
T 1h6t_A 47 SIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNK--LTDIKP--LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLSLEH 121 (291)
T ss_dssp TCCEEECTTSCCCCCTTGGGCTTCCEEECCSSC--CCCCGG--GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEECTT
T ss_pred cccEEEccCCCcccChhHhcCCCCCEEEccCCc--cCCCcc--cccCCCCCEEECCCCcCCCChh-hccCCCCCEEECCC
Confidence 788888888888888776688899999998886 333444 6788899999999998888664 88888999999999
Q ss_pred CCCCCchhhhccCCCcEEEccCccCCccchhhcCCCCCcEEcccCcccccccChhhhcCCCCCcEEEcccCCCCcccccC
Q 047163 558 CPRNDIAILRQLKKLEILRLRHSYTERLPLEIGQLTRLRLLDLSNCWRLKVIAPNVISKLSRLEELYMGNSFPKWDKVEG 637 (658)
Q Consensus 558 ~~~~~l~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~ 637 (658)
|.+..++.+..+++|++|++++|.+..+ ..++++++|++|++++| .++.+++ +..+++|++|++++|. +++
T Consensus 122 n~i~~~~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N-~l~~~~~--l~~l~~L~~L~L~~N~-----i~~ 192 (291)
T 1h6t_A 122 NGISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDN-QISDIVP--LAGLTKLQNLYLSKNH-----ISD 192 (291)
T ss_dssp SCCCCCGGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSS-CCCCCGG--GTTCTTCCEEECCSSC-----CCB
T ss_pred CcCCCChhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCC-ccccchh--hcCCCccCEEECCCCc-----CCC
Confidence 9888888888889999999999888887 45888899999999998 7888776 7888999999998854 443
Q ss_pred CCccchhhcCCCCccccCCC
Q 047163 638 GSNASLAELKGLSKLDTGHN 657 (658)
Q Consensus 638 ~~~~~l~~l~~L~~L~l~~N 657 (658)
++ .+..+++|+.|++++|
T Consensus 193 -l~-~l~~l~~L~~L~l~~n 210 (291)
T 1h6t_A 193 -LR-ALAGLKNLDVLELFSQ 210 (291)
T ss_dssp -CG-GGTTCTTCSEEEEEEE
T ss_pred -Ch-hhccCCCCCEEECcCC
Confidence 33 4788888998888876
No 16
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.66 E-value=8.3e-16 Score=154.33 Aligned_cols=171 Identities=22% Similarity=0.297 Sum_probs=125.8
Q ss_pred CceEEeccCCCCCcCCCccCCCCCceEEEecCCCCCCccchHHhcCCCCCcEEEccCCCCCCCccccccCCCcceEEccC
Q 047163 478 GPIAISLPHRDIQELPERLQCPNLQLFLFFGKGYGPMQISDLFFEGTKELKDLSLTRIPFSSLPSSLGSLINLGTLCLED 557 (658)
Q Consensus 478 ~~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~L~~ 557 (658)
+++.+.+.++.+..+|.... ++++.|.+++|. ...++...+..+++|++|++++|.+..+|.. +.+++|++|++++
T Consensus 11 ~l~~l~~~~~~l~~ip~~~~-~~l~~L~L~~N~--l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~Ls~ 86 (290)
T 1p9a_G 11 SHLEVNCDKRNLTALPPDLP-KDTTILHLSENL--LYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDLSH 86 (290)
T ss_dssp TCCEEECTTSCCSSCCSCCC-TTCCEEECTTSC--CSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEECCS
T ss_pred CccEEECCCCCCCcCCCCCC-CCCCEEEcCCCc--CCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEECCC
Confidence 56777777777777776543 677888888775 3445555577788888888888887776654 6777888888888
Q ss_pred CCCCCc-hhhhccCCCcEEEccCccCCccc-hhhcCCCCCcEEcccCcccccccChhhhcCCCCCcEEEcccCCCCcccc
Q 047163 558 CPRNDI-AILRQLKKLEILRLRHSYTERLP-LEIGQLTRLRLLDLSNCWRLKVIAPNVISKLSRLEELYMGNSFPKWDKV 635 (658)
Q Consensus 558 ~~~~~l-~~~~~l~~L~~L~l~~~~~~~lp-~~~~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~~~~~~ 635 (658)
|.+..+ ..+..+++|++|++++|.+..+| ..+.++++|++|++++| .++.+++..+..+++|+.|++++| .+
T Consensus 87 N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N-----~l 160 (290)
T 1p9a_G 87 NQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN-ELKTLPPGLLTPTPKLEKLSLANN-----NL 160 (290)
T ss_dssp SCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTS-----CC
T ss_pred CcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCC-CCCccChhhcccccCCCEEECCCC-----cC
Confidence 877776 55677788888888888777776 45777888888888888 777777776777888888888774 35
Q ss_pred cCCCccchhhcCCCCccccCCCC
Q 047163 636 EGGSNASLAELKGLSKLDTGHNR 658 (658)
Q Consensus 636 ~~~~~~~l~~l~~L~~L~l~~N~ 658 (658)
++..+..+..+++|+.|++++|+
T Consensus 161 ~~l~~~~~~~l~~L~~L~L~~N~ 183 (290)
T 1p9a_G 161 TELPAGLLNGLENLDTLLLQENS 183 (290)
T ss_dssp SCCCTTTTTTCTTCCEEECCSSC
T ss_pred CccCHHHhcCcCCCCEEECCCCc
Confidence 54445556778888888887774
No 17
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.65 E-value=1.5e-15 Score=154.01 Aligned_cols=165 Identities=20% Similarity=0.293 Sum_probs=135.9
Q ss_pred CceEEeccCCCCCcCCCccCCCCCceEEEecCCCCCCccchHHhcCCCCCcEEEccCCCCCCCccccccCCCcceEEccC
Q 047163 478 GPIAISLPHRDIQELPERLQCPNLQLFLFFGKGYGPMQISDLFFEGTKELKDLSLTRIPFSSLPSSLGSLINLGTLCLED 557 (658)
Q Consensus 478 ~~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~L~~ 557 (658)
+++.+.+.++.+..++....+++|+.|++++|. ...++. +..+++|++|++++|.+..+| .+..+++|++|++++
T Consensus 42 ~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~--i~~~~~--~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l~~ 116 (308)
T 1h6u_A 42 GITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQ--ITDLAP--LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLTS 116 (308)
T ss_dssp TCCEEECTTSCCCCCTTGGGCTTCCEEECCSSC--CCCCGG--GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECTT
T ss_pred CcCEEEeeCCCccCchhhhccCCCCEEEccCCc--CCCChh--HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEECCC
Confidence 788888888888888766688899999998886 344554 678889999999999888876 578888999999999
Q ss_pred CCCCCchhhhccCCCcEEEccCccCCccchhhcCCCCCcEEcccCcccccccChhhhcCCCCCcEEEcccCCCCcccccC
Q 047163 558 CPRNDIAILRQLKKLEILRLRHSYTERLPLEIGQLTRLRLLDLSNCWRLKVIAPNVISKLSRLEELYMGNSFPKWDKVEG 637 (658)
Q Consensus 558 ~~~~~l~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~ 637 (658)
|.+..++.+..+++|++|++++|.+..+|. ++.+++|++|++++| .++.+++ +..+++|+.|++++|. +++
T Consensus 117 n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~--l~~l~~L~~L~l~~n~-----l~~ 187 (308)
T 1h6u_A 117 TQITDVTPLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNA-QVSDLTP--LANLSKLTTLKADDNK-----ISD 187 (308)
T ss_dssp SCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSS-CCCCCGG--GTTCTTCCEEECCSSC-----CCC
T ss_pred CCCCCchhhcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCC-cCCCChh--hcCCCCCCEEECCCCc-----cCc
Confidence 988888778888999999999998888876 888899999999998 7887776 7888999999998854 554
Q ss_pred CCccchhhcCCCCccccCCCC
Q 047163 638 GSNASLAELKGLSKLDTGHNR 658 (658)
Q Consensus 638 ~~~~~l~~l~~L~~L~l~~N~ 658 (658)
..+ +..+++|+.|++++|+
T Consensus 188 ~~~--l~~l~~L~~L~L~~N~ 206 (308)
T 1h6u_A 188 ISP--LASLPNLIEVHLKNNQ 206 (308)
T ss_dssp CGG--GGGCTTCCEEECTTSC
T ss_pred Chh--hcCCCCCCEEEccCCc
Confidence 333 7888899999998884
No 18
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.64 E-value=1.1e-15 Score=164.13 Aligned_cols=108 Identities=26% Similarity=0.331 Sum_probs=70.2
Q ss_pred cccCCCcceEEccCCCCCCchhhhccCCCcEEEccCccCCcc-chhhcCCCCCcEEcccCcccccccChhhhcCCCCCcE
Q 047163 544 LGSLINLGTLCLEDCPRNDIAILRQLKKLEILRLRHSYTERL-PLEIGQLTRLRLLDLSNCWRLKVIAPNVISKLSRLEE 622 (658)
Q Consensus 544 i~~l~~L~~L~L~~~~~~~l~~~~~l~~L~~L~l~~~~~~~l-p~~~~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~ 622 (658)
+..+++|++|+|++|.+..++.+..+++|++|+|++|.+..+ |..+.++++|+.|++++| .++.+++..+.++++|+.
T Consensus 192 ~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~ 270 (452)
T 3zyi_A 192 FEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNS-QVSLIERNAFDGLASLVE 270 (452)
T ss_dssp TTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCE
T ss_pred ccCCCCCCEEECCCCcccccccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCC-cCceECHHHhcCCCCCCE
Confidence 445566666666666666665666666666666666666655 455666677777777776 666666665666777777
Q ss_pred EEcccCCCCcccccCCCccchhhcCCCCccccCCC
Q 047163 623 LYMGNSFPKWDKVEGGSNASLAELKGLSKLDTGHN 657 (658)
Q Consensus 623 L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~N 657 (658)
|++++| .+++..+..+..+++|+.|++++|
T Consensus 271 L~L~~N-----~l~~~~~~~~~~l~~L~~L~L~~N 300 (452)
T 3zyi_A 271 LNLAHN-----NLSSLPHDLFTPLRYLVELHLHHN 300 (452)
T ss_dssp EECCSS-----CCSCCCTTSSTTCTTCCEEECCSS
T ss_pred EECCCC-----cCCccChHHhccccCCCEEEccCC
Confidence 777663 355555556667777777777776
No 19
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.64 E-value=1.1e-15 Score=164.13 Aligned_cols=172 Identities=24% Similarity=0.288 Sum_probs=103.5
Q ss_pred CceEEeccCCCCCcCCCc--cCCCCCceEEEecCCCCCCccchHHhcCCCCCcEEEccCCCCCCCcc-ccccCCCcceEE
Q 047163 478 GPIAISLPHRDIQELPER--LQCPNLQLFLFFGKGYGPMQISDLFFEGTKELKDLSLTRIPFSSLPS-SLGSLINLGTLC 554 (658)
Q Consensus 478 ~~~~l~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~ 554 (658)
+++.|.+++|.+..++.. ..+++|+.|++++|. ...++...|..+++|++|++++|.+..+|. .+..+++|++|+
T Consensus 100 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~--l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 177 (452)
T 3zyi_A 100 HLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW--LTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLD 177 (452)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC--CSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEE
T ss_pred CCCEEECCCCccCCcChhhccCcccCCEEECCCCc--CCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEe
Confidence 344444444444433321 134444444444443 223344444445555555555555544432 344455555555
Q ss_pred ccCCC-CCCc--hhhhccCCCcEEEccCccCCccchhhcCCCCCcEEcccCcccccccChhhhcCCCCCcEEEcccCCCC
Q 047163 555 LEDCP-RNDI--AILRQLKKLEILRLRHSYTERLPLEIGQLTRLRLLDLSNCWRLKVIAPNVISKLSRLEELYMGNSFPK 631 (658)
Q Consensus 555 L~~~~-~~~l--~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~~ 631 (658)
+++|+ +..+ ..+..+++|++|++++|.+..+|. +..+++|+.|++++| .++.+++..+.++++|+.|++++|
T Consensus 178 l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~n--- 252 (452)
T 3zyi_A 178 LGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPN-LTPLVGLEELEMSGN-HFPEIRPGSFHGLSSLKKLWVMNS--- 252 (452)
T ss_dssp CCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCC-CTTCTTCCEEECTTS-CCSEECGGGGTTCTTCCEEECTTS---
T ss_pred CCCCCCccccChhhccCCCCCCEEECCCCccccccc-ccccccccEEECcCC-cCcccCcccccCccCCCEEEeCCC---
Confidence 55432 3333 246667777777777777777764 677778888888887 777777777788888888888874
Q ss_pred cccccCCCccchhhcCCCCccccCCCC
Q 047163 632 WDKVEGGSNASLAELKGLSKLDTGHNR 658 (658)
Q Consensus 632 ~~~~~~~~~~~l~~l~~L~~L~l~~N~ 658 (658)
.+++..+..+..+++|+.|++++|+
T Consensus 253 --~l~~~~~~~~~~l~~L~~L~L~~N~ 277 (452)
T 3zyi_A 253 --QVSLIERNAFDGLASLVELNLAHNN 277 (452)
T ss_dssp --CCCEECTTTTTTCTTCCEEECCSSC
T ss_pred --cCceECHHHhcCCCCCCEEECCCCc
Confidence 3666677788888888888888874
No 20
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.64 E-value=6.9e-16 Score=156.92 Aligned_cols=171 Identities=18% Similarity=0.242 Sum_probs=88.2
Q ss_pred CceEEeccCCCCC---cCCCcc-CCCCCceEEEec-CCCCCCccchHHhcCCCCCcEEEccCCCCC-CCccccccCCCcc
Q 047163 478 GPIAISLPHRDIQ---ELPERL-QCPNLQLFLFFG-KGYGPMQISDLFFEGTKELKDLSLTRIPFS-SLPSSLGSLINLG 551 (658)
Q Consensus 478 ~~~~l~l~~~~~~---~~~~~~-~~~~L~~L~l~~-~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~lp~~i~~l~~L~ 551 (658)
+++.+.+.++.+. .+|..+ .+++|+.|++++ |. ....+|.. +.++++|++|++++|.+. .+|..+..+++|+
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~-l~~~~p~~-l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINN-LVGPIPPA-IAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETT-EESCCCGG-GGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCc-ccccCChh-HhcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence 4566666666554 244333 556666666663 43 11223332 455666666666666655 4555566666666
Q ss_pred eEEccCCCCCC-c-hhhhccCCCcEEEccCccCC-ccchhhcCCC-CCcEEcccCcccccccChhhhcCCCCCcEEEccc
Q 047163 552 TLCLEDCPRND-I-AILRQLKKLEILRLRHSYTE-RLPLEIGQLT-RLRLLDLSNCWRLKVIAPNVISKLSRLEELYMGN 627 (658)
Q Consensus 552 ~L~L~~~~~~~-l-~~~~~l~~L~~L~l~~~~~~-~lp~~~~~l~-~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~ 627 (658)
+|++++|.+.. + ..+..+++|++|++++|.+. .+|..+++++ +|++|++++| .++...+..++.++ |+.|++++
T Consensus 129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N-~l~~~~~~~~~~l~-L~~L~Ls~ 206 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRN-RLTGKIPPTFANLN-LAFVDLSR 206 (313)
T ss_dssp EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSS-EEEEECCGGGGGCC-CSEEECCS
T ss_pred EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCC-eeeccCChHHhCCc-ccEEECcC
Confidence 66666665542 2 45555666666666666554 4555555555 5566666555 44433333344444 55555554
Q ss_pred CCCCcccccCCCccchhhcCCCCccccCCC
Q 047163 628 SFPKWDKVEGGSNASLAELKGLSKLDTGHN 657 (658)
Q Consensus 628 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~N 657 (658)
| .+.+..|..+..+++|+.|++++|
T Consensus 207 N-----~l~~~~~~~~~~l~~L~~L~L~~N 231 (313)
T 1ogq_A 207 N-----MLEGDASVLFGSDKNTQKIHLAKN 231 (313)
T ss_dssp S-----EEEECCGGGCCTTSCCSEEECCSS
T ss_pred C-----cccCcCCHHHhcCCCCCEEECCCC
Confidence 2 233344444444444444444443
No 21
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.63 E-value=1.6e-15 Score=162.04 Aligned_cols=173 Identities=21% Similarity=0.281 Sum_probs=125.5
Q ss_pred CceEEeccCCCCCcCCCc--cCCCCCceEEEecCCCCCCccchHHhcCCCCCcEEEccCC-CCCCCcc-ccccCCCcceE
Q 047163 478 GPIAISLPHRDIQELPER--LQCPNLQLFLFFGKGYGPMQISDLFFEGTKELKDLSLTRI-PFSSLPS-SLGSLINLGTL 553 (658)
Q Consensus 478 ~~~~l~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~lp~-~i~~l~~L~~L 553 (658)
+++.|.+.+|.+..++.. ..+++|+.|++++|. ...++...|..+++|++|++++| .+..+|. .+..+++|++|
T Consensus 113 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~--i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L 190 (440)
T 3zyj_A 113 NLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNP--IESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYL 190 (440)
T ss_dssp SCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCC--CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEE
T ss_pred cCCEEECCCCcCCeeCHhHhhccccCceeeCCCCc--ccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCee
Confidence 566777777766666552 256677777777765 34455555666777777777763 3444443 46677888888
Q ss_pred EccCCCCCCchhhhccCCCcEEEccCccCCcc-chhhcCCCCCcEEcccCcccccccChhhhcCCCCCcEEEcccCCCCc
Q 047163 554 CLEDCPRNDIAILRQLKKLEILRLRHSYTERL-PLEIGQLTRLRLLDLSNCWRLKVIAPNVISKLSRLEELYMGNSFPKW 632 (658)
Q Consensus 554 ~L~~~~~~~l~~~~~l~~L~~L~l~~~~~~~l-p~~~~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~~~ 632 (658)
+|++|.+..++.+..+++|++|+|++|.+..+ |..+.++++|+.|++++| .++.+++..+.++++|++|++++|
T Consensus 191 ~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N---- 265 (440)
T 3zyj_A 191 NLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQS-QIQVIERNAFDNLQSLVEINLAHN---- 265 (440)
T ss_dssp ECTTSCCSSCCCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTSSTTCTTCCEEECTTS----
T ss_pred cCCCCcCccccccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCC-ceeEEChhhhcCCCCCCEEECCCC----
Confidence 88888877777778888888888888877777 567778888888888888 777777777788888888888874
Q ss_pred ccccCCCccchhhcCCCCccccCCCC
Q 047163 633 DKVEGGSNASLAELKGLSKLDTGHNR 658 (658)
Q Consensus 633 ~~~~~~~~~~l~~l~~L~~L~l~~N~ 658 (658)
.+++..+..+..+++|+.|++++|.
T Consensus 266 -~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 266 -NLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp -CCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred -CCCccChhHhccccCCCEEEcCCCC
Confidence 3666666677888888888888873
No 22
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.63 E-value=1.5e-15 Score=162.37 Aligned_cols=172 Identities=24% Similarity=0.326 Sum_probs=106.3
Q ss_pred CceEEeccCCCCCcCCCc--cCCCCCceEEEecCCCCCCccchHHhcCCCCCcEEEccCCCCCCCcc-ccccCCCcceEE
Q 047163 478 GPIAISLPHRDIQELPER--LQCPNLQLFLFFGKGYGPMQISDLFFEGTKELKDLSLTRIPFSSLPS-SLGSLINLGTLC 554 (658)
Q Consensus 478 ~~~~l~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~ 554 (658)
+++.|.+.+|.+..++.. ..+++|+.|++++|. ...++...|..+++|++|++++|.+..+|. .+..+++|++|+
T Consensus 89 ~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~--l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~ 166 (440)
T 3zyj_A 89 HLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR--LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLD 166 (440)
T ss_dssp SCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSC--CSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEE
T ss_pred CCCEEECCCCcCCccChhhccCCccCCEEECCCCc--CCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeC
Confidence 444555555544443321 144555555555553 233444444555555555555555554432 344555555555
Q ss_pred ccCCC-CCCc--hhhhccCCCcEEEccCccCCccchhhcCCCCCcEEcccCcccccccChhhhcCCCCCcEEEcccCCCC
Q 047163 555 LEDCP-RNDI--AILRQLKKLEILRLRHSYTERLPLEIGQLTRLRLLDLSNCWRLKVIAPNVISKLSRLEELYMGNSFPK 631 (658)
Q Consensus 555 L~~~~-~~~l--~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~~ 631 (658)
|++|+ +..+ ..+..+++|++|++++|.+..+|. +..+++|+.|++++| .++.+++..+.++++|+.|++++|
T Consensus 167 l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~n--- 241 (440)
T 3zyj_A 167 LGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPN-LTPLIKLDELDLSGN-HLSAIRPGSFQGLMHLQKLWMIQS--- 241 (440)
T ss_dssp CCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCC-CTTCSSCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTC---
T ss_pred CCCCCCcceeCcchhhcccccCeecCCCCcCccccc-cCCCcccCEEECCCC-ccCccChhhhccCccCCEEECCCC---
Confidence 55532 3333 346667777777777777777774 677777888888887 777777766778888888888774
Q ss_pred cccccCCCccchhhcCCCCccccCCCC
Q 047163 632 WDKVEGGSNASLAELKGLSKLDTGHNR 658 (658)
Q Consensus 632 ~~~~~~~~~~~l~~l~~L~~L~l~~N~ 658 (658)
.+++..+..+..+++|+.|++++|+
T Consensus 242 --~l~~~~~~~~~~l~~L~~L~L~~N~ 266 (440)
T 3zyj_A 242 --QIQVIERNAFDNLQSLVEINLAHNN 266 (440)
T ss_dssp --CCCEECTTSSTTCTTCCEEECTTSC
T ss_pred --ceeEEChhhhcCCCCCCEEECCCCC
Confidence 3666667778888888888888874
No 23
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.63 E-value=2.4e-15 Score=165.76 Aligned_cols=164 Identities=27% Similarity=0.331 Sum_probs=127.3
Q ss_pred CceEEeccCCCCCcCCCccCCCCCceEEEecCCCCCCccchHHhcCCCCCcEEEccCCCCCCCccccccCCCcceEEccC
Q 047163 478 GPIAISLPHRDIQELPERLQCPNLQLFLFFGKGYGPMQISDLFFEGTKELKDLSLTRIPFSSLPSSLGSLINLGTLCLED 557 (658)
Q Consensus 478 ~~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~L~~ 557 (658)
+++.|.+.+|.+..++....+++|+.|.+++|. ...+++ +..+++|+.|+|++|.+..+| .+..+++|++|+|++
T Consensus 44 ~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~--l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~ 118 (605)
T 1m9s_A 44 SIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNK--LTDIKP--LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLSLEH 118 (605)
T ss_dssp TCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSC--CCCCGG--GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEECTT
T ss_pred CCCEEECcCCCCCCChHHccCCCCCEEEeeCCC--CCCChh--hccCCCCCEEECcCCCCCCCh-hhccCCCCCEEEecC
Confidence 677788888888777766678888888888886 333444 677888888888888887766 677888888888888
Q ss_pred CCCCCchhhhccCCCcEEEccCccCCccchhhcCCCCCcEEcccCcccccccChhhhcCCCCCcEEEcccCCCCcccccC
Q 047163 558 CPRNDIAILRQLKKLEILRLRHSYTERLPLEIGQLTRLRLLDLSNCWRLKVIAPNVISKLSRLEELYMGNSFPKWDKVEG 637 (658)
Q Consensus 558 ~~~~~l~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~ 637 (658)
|.+..++.+..+++|+.|+|++|.+..+ ..++.+++|+.|+|++| .+..+++ +..+++|+.|++++|. +++
T Consensus 119 N~l~~l~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N-~l~~~~~--l~~l~~L~~L~Ls~N~-----i~~ 189 (605)
T 1m9s_A 119 NGISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDN-QISDIVP--LAGLTKLQNLYLSKNH-----ISD 189 (605)
T ss_dssp SCCCCCGGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSS-CCCCCGG--GTTCTTCCEEECCSSC-----CCB
T ss_pred CCCCCCccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCC-cCCCchh--hccCCCCCEEECcCCC-----CCC
Confidence 8888887788888888888888887777 45788888888888888 7777766 7788888888888754 443
Q ss_pred CCccchhhcCCCCccccCCC
Q 047163 638 GSNASLAELKGLSKLDTGHN 657 (658)
Q Consensus 638 ~~~~~l~~l~~L~~L~l~~N 657 (658)
. ..+..|++|+.|++++|
T Consensus 190 l--~~l~~l~~L~~L~L~~N 207 (605)
T 1m9s_A 190 L--RALAGLKNLDVLELFSQ 207 (605)
T ss_dssp C--GGGTTCTTCSEEECCSE
T ss_pred C--hHHccCCCCCEEEccCC
Confidence 2 35778888888888876
No 24
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.62 E-value=3.7e-15 Score=148.29 Aligned_cols=149 Identities=22% Similarity=0.352 Sum_probs=133.7
Q ss_pred CceEEeccCCCCCcCCCccCCCCCceEEEecCCCCCCccchHHhcCCCCCcEEEccCCCCCCCccc-cccCCCcceEEcc
Q 047163 478 GPIAISLPHRDIQELPERLQCPNLQLFLFFGKGYGPMQISDLFFEGTKELKDLSLTRIPFSSLPSS-LGSLINLGTLCLE 556 (658)
Q Consensus 478 ~~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~-i~~l~~L~~L~L~ 556 (658)
+++.+.+.+|.+..++....+++|+.|.+.+|. ...++...+..+++|++|++++|.+..+|.. +..+++|++|+++
T Consensus 64 ~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~--l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 141 (272)
T 3rfs_A 64 NVRYLALGGNKLHDISALKELTNLTYLILTGNQ--LQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLA 141 (272)
T ss_dssp TCCEEECTTSCCCCCGGGTTCTTCCEEECTTSC--CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEECCCCCCCCchhhcCCCCCCEEECCCCc--cCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECC
Confidence 899999999999888777799999999999996 4467777788999999999999999988655 7889999999999
Q ss_pred CCCCCCc--hhhhccCCCcEEEccCccCCccchh-hcCCCCCcEEcccCcccccccChhhhcCCCCCcEEEcccCC
Q 047163 557 DCPRNDI--AILRQLKKLEILRLRHSYTERLPLE-IGQLTRLRLLDLSNCWRLKVIAPNVISKLSRLEELYMGNSF 629 (658)
Q Consensus 557 ~~~~~~l--~~~~~l~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~ 629 (658)
+|.+..+ ..++.+++|++|++++|.+..+|.. ++++++|++|++++| .++.+++..++.+++|+.|++++|.
T Consensus 142 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (272)
T 3rfs_A 142 HNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQYIWLHDNP 216 (272)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCC-cCCccCHHHHhCCcCCCEEEccCCC
Confidence 9999888 3478999999999999999988754 689999999999999 8999998878999999999999875
No 25
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.62 E-value=2.5e-15 Score=150.02 Aligned_cols=173 Identities=24% Similarity=0.301 Sum_probs=109.3
Q ss_pred CceEEeccCCCCCcCCC--ccCCCCCceEEEecCCCCCCccchHHhcCCCCCcEEEccCCCCCCCc-cccccCCCcceEE
Q 047163 478 GPIAISLPHRDIQELPE--RLQCPNLQLFLFFGKGYGPMQISDLFFEGTKELKDLSLTRIPFSSLP-SSLGSLINLGTLC 554 (658)
Q Consensus 478 ~~~~l~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp-~~i~~l~~L~~L~ 554 (658)
+++.+.+++|.+..++. ...+++|+.|++++|. ...++...+..+++|++|++++|.+..++ ..+..+++|++|+
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~--l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE--IQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 106 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCC--CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCc--CCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEE
Confidence 56677777776665553 2256677777776664 33444444566667777777777666543 4566666677777
Q ss_pred ccCCCCCCc--hhhhccCCCcEEEccCccCCc--cchhhcCCCCCcEEcccCcccccccChhhhcCC-------------
Q 047163 555 LEDCPRNDI--AILRQLKKLEILRLRHSYTER--LPLEIGQLTRLRLLDLSNCWRLKVIAPNVISKL------------- 617 (658)
Q Consensus 555 L~~~~~~~l--~~~~~l~~L~~L~l~~~~~~~--lp~~~~~l~~L~~L~l~~~~~l~~~~~~~i~~l------------- 617 (658)
+++|.+..+ ..++.+++|++|++++|.+.. +|..++++++|++|++++| .++.+++..+..+
T Consensus 107 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~l~l~L~ls 185 (276)
T 2z62_A 107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYCTDLRVLHQMPLLNLSLDLS 185 (276)
T ss_dssp CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSS-CCCEECGGGGHHHHTCTTCCEEEECC
T ss_pred CCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCC-CCCcCCHHHhhhhhhccccceeeecC
Confidence 766666655 246666666677666666654 4566666666666666666 5555544333322
Q ss_pred --------------CCCcEEEcccCCCCcccccCCCccchhhcCCCCccccCCCC
Q 047163 618 --------------SRLEELYMGNSFPKWDKVEGGSNASLAELKGLSKLDTGHNR 658 (658)
Q Consensus 618 --------------~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~N~ 658 (658)
.+|+.|++++| .+++..+..+..+++|+.|++++|.
T Consensus 186 ~n~l~~~~~~~~~~~~L~~L~L~~n-----~l~~~~~~~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 186 LNPMNFIQPGAFKEIRLKELALDTN-----QLKSVPDGIFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp SSCCCEECTTSSCSCCEEEEECCSS-----CCSCCCTTTTTTCCSCCEEECCSSC
T ss_pred CCcccccCccccCCCcccEEECCCC-----ceeecCHhHhcccccccEEEccCCc
Confidence 25666666653 3555555567889999999999884
No 26
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.62 E-value=9e-16 Score=155.70 Aligned_cols=175 Identities=24% Similarity=0.292 Sum_probs=101.2
Q ss_pred CceEEeccCCCCCcCCCc--cCCCCCceEEEecCCCCCCccchHHhcCCCCCcEEEccCCCCCCCccccccCCCcceEEc
Q 047163 478 GPIAISLPHRDIQELPER--LQCPNLQLFLFFGKGYGPMQISDLFFEGTKELKDLSLTRIPFSSLPSSLGSLINLGTLCL 555 (658)
Q Consensus 478 ~~~~l~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~L 555 (658)
+++++.+.+|.+..+|.. ..+++|+.|.+++|...........+..+++|++|++++|.+..+|..+..+++|++|++
T Consensus 29 ~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l 108 (306)
T 2z66_A 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDF 108 (306)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEEC
T ss_pred CCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEEEC
Confidence 677888888877777764 367778888887775322111112233456666666666655555554555555555555
Q ss_pred cCCCCCCc---------------------------hhhhccCCCcEEEccCccCCc--cchhhcCCCCCcEEcccCcccc
Q 047163 556 EDCPRNDI---------------------------AILRQLKKLEILRLRHSYTER--LPLEIGQLTRLRLLDLSNCWRL 606 (658)
Q Consensus 556 ~~~~~~~l---------------------------~~~~~l~~L~~L~l~~~~~~~--lp~~~~~l~~L~~L~l~~~~~l 606 (658)
++|.+..+ ..+..+++|++|++++|.+.. +|..+..+++|++|++++| .+
T Consensus 109 ~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n-~l 187 (306)
T 2z66_A 109 QHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QL 187 (306)
T ss_dssp TTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-CC
T ss_pred CCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCC-Cc
Confidence 55443332 234455555555555554443 4555566666666666666 55
Q ss_pred cccChhhhcCCCCCcEEEcccCCCCcccccCCCccchhhcCCCCccccCCCC
Q 047163 607 KVIAPNVISKLSRLEELYMGNSFPKWDKVEGGSNASLAELKGLSKLDTGHNR 658 (658)
Q Consensus 607 ~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~N~ 658 (658)
+.+++..+..+++|++|++++|. +++..+..+..+++|+.|++++|+
T Consensus 188 ~~~~~~~~~~l~~L~~L~L~~N~-----l~~~~~~~~~~l~~L~~L~L~~N~ 234 (306)
T 2z66_A 188 EQLSPTAFNSLSSLQVLNMSHNN-----FFSLDTFPYKCLNSLQVLDYSLNH 234 (306)
T ss_dssp CEECTTTTTTCTTCCEEECTTSC-----CSBCCSGGGTTCTTCCEEECTTSC
T ss_pred CCcCHHHhcCCCCCCEEECCCCc-----cCccChhhccCcccCCEeECCCCC
Confidence 55555556666666666666632 454445556667777777777663
No 27
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.61 E-value=1.2e-15 Score=148.71 Aligned_cols=173 Identities=14% Similarity=0.211 Sum_probs=102.2
Q ss_pred CceEEeccCCCCCcCCCc--cCCCCCceEEEecCCCCCCccchHHhcCCCCCcEEEccC-CCCCCCc-cccccCCCcceE
Q 047163 478 GPIAISLPHRDIQELPER--LQCPNLQLFLFFGKGYGPMQISDLFFEGTKELKDLSLTR-IPFSSLP-SSLGSLINLGTL 553 (658)
Q Consensus 478 ~~~~l~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~lp-~~i~~l~~L~~L 553 (658)
+++.+.+.+|.+..++.. ..+++|+.|++.+|. ....++...|.++++|++|++++ |.+..+| ..+..+++|++|
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~-~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDV-TLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCS-SCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCC-CcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 566666666666665542 256666677666663 13345554556666666666666 6666554 345566666666
Q ss_pred EccCCCCCCchhhhccCCCc---EEEccCc-cCCccch-hhcCCCCCc-EEcccCcccccccChhhhcCCCCCcEEEccc
Q 047163 554 CLEDCPRNDIAILRQLKKLE---ILRLRHS-YTERLPL-EIGQLTRLR-LLDLSNCWRLKVIAPNVISKLSRLEELYMGN 627 (658)
Q Consensus 554 ~L~~~~~~~l~~~~~l~~L~---~L~l~~~-~~~~lp~-~~~~l~~L~-~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~ 627 (658)
++++|.+..++.+..+++|+ +|++++| .+..+|. .+.++++|+ +|++++| .++.+|+..+.. ++|+.|++++
T Consensus 111 ~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n-~l~~i~~~~~~~-~~L~~L~L~~ 188 (239)
T 2xwt_C 111 GIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNN-GFTSVQGYAFNG-TKLDAVYLNK 188 (239)
T ss_dssp EEEEECCCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSC-CCCEECTTTTTT-CEEEEEECTT
T ss_pred eCCCCCCccccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCC-CCcccCHhhcCC-CCCCEEEcCC
Confidence 66666666664455566665 6666666 6666653 355666666 6666666 566665553333 5666666665
Q ss_pred CCCCcccccCCCccchhhc-CCCCccccCCC
Q 047163 628 SFPKWDKVEGGSNASLAEL-KGLSKLDTGHN 657 (658)
Q Consensus 628 ~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~N 657 (658)
|. .+++..+..+..+ ++|+.|++++|
T Consensus 189 n~----~l~~i~~~~~~~l~~~L~~L~l~~N 215 (239)
T 2xwt_C 189 NK----YLTVIDKDAFGGVYSGPSLLDVSQT 215 (239)
T ss_dssp CT----TCCEECTTTTTTCSBCCSEEECTTC
T ss_pred CC----CcccCCHHHhhccccCCcEEECCCC
Confidence 31 1333334455556 66666666655
No 28
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.61 E-value=1e-14 Score=150.70 Aligned_cols=167 Identities=20% Similarity=0.287 Sum_probs=145.7
Q ss_pred CceEEeccCCCCCcCCCccCCCCCceEEEecCCCCCCccchHHhcCCCCCcEEEccCCCCCCCccccccCCCcceEEccC
Q 047163 478 GPIAISLPHRDIQELPERLQCPNLQLFLFFGKGYGPMQISDLFFEGTKELKDLSLTRIPFSSLPSSLGSLINLGTLCLED 557 (658)
Q Consensus 478 ~~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~L~~ 557 (658)
+++.+.+.+|.+..++....+++|+.|.+.+|.. ..++. +..+++|+.|++++|.+..+|. +..+++|++|++++
T Consensus 178 ~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l--~~~~~--~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~ 252 (347)
T 4fmz_A 178 DLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQI--TDITP--VANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGT 252 (347)
T ss_dssp TCSEEECTTSCCCCCGGGGGCTTCCEEECCSSCC--CCCGG--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCS
T ss_pred CCCEEEccCCcccccccccCCCccceeecccCCC--CCCch--hhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCC
Confidence 7889999999888887767889999999998863 33333 6789999999999999998877 88999999999999
Q ss_pred CCCCCchhhhccCCCcEEEccCccCCccchhhcCCCCCcEEcccCcccccccChhhhcCCCCCcEEEcccCCCCcccccC
Q 047163 558 CPRNDIAILRQLKKLEILRLRHSYTERLPLEIGQLTRLRLLDLSNCWRLKVIAPNVISKLSRLEELYMGNSFPKWDKVEG 637 (658)
Q Consensus 558 ~~~~~l~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~ 637 (658)
|.+..++.+..+++|++|++++|.+..+| .+..+++|+.|++++| .++..++..++++++|++|++++|. +++
T Consensus 253 n~l~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~L~~n-~l~~~~~~~l~~l~~L~~L~L~~n~-----l~~ 325 (347)
T 4fmz_A 253 NQISDINAVKDLTKLKMLNVGSNQISDIS-VLNNLSQLNSLFLNNN-QLGNEDMEVIGGLTNLTTLFLSQNH-----ITD 325 (347)
T ss_dssp SCCCCCGGGTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSS-CCCGGGHHHHHTCTTCSEEECCSSS-----CCC
T ss_pred CccCCChhHhcCCCcCEEEccCCccCCCh-hhcCCCCCCEEECcCC-cCCCcChhHhhccccCCEEEccCCc-----ccc
Confidence 99998888999999999999999998886 4889999999999999 8888888889999999999999964 665
Q ss_pred CCccchhhcCCCCccccCCCC
Q 047163 638 GSNASLAELKGLSKLDTGHNR 658 (658)
Q Consensus 638 ~~~~~l~~l~~L~~L~l~~N~ 658 (658)
..| +..+++|+.|++++|+
T Consensus 326 ~~~--~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 326 IRP--LASLSKMDSADFANQV 344 (347)
T ss_dssp CGG--GGGCTTCSEESSSCC-
T ss_pred ccC--hhhhhccceeehhhhc
Confidence 555 8899999999999985
No 29
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.61 E-value=1.5e-15 Score=154.01 Aligned_cols=173 Identities=17% Similarity=0.242 Sum_probs=147.5
Q ss_pred CceEEeccCCCCCcCCCcc-CCCCCceEEEecCCCCCCccch-HHhcCCCCCcEEEccCCCCCC-CccccccCCCcceEE
Q 047163 478 GPIAISLPHRDIQELPERL-QCPNLQLFLFFGKGYGPMQISD-LFFEGTKELKDLSLTRIPFSS-LPSSLGSLINLGTLC 554 (658)
Q Consensus 478 ~~~~l~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~-lp~~i~~l~~L~~L~ 554 (658)
+++.+.+.+|.+..+|... .+++|+.|.+.+|. ...++. ..+..+++|++|++++|.+.. .|..+..+++|++|+
T Consensus 79 ~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~--l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 156 (306)
T 2z66_A 79 SLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSN--LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLK 156 (306)
T ss_dssp CCCEEECCSCSEEEEEEEEETCTTCCEEECTTSE--EESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEE
T ss_pred ccCEEECCCCccccChhhcCCCCCCCEEECCCCc--ccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEE
Confidence 7889999999888777644 88999999999986 333333 457889999999999999884 456688899999999
Q ss_pred ccCCCCCC--c-hhhhccCCCcEEEccCccCCcc-chhhcCCCCCcEEcccCcccccccChhhhcCCCCCcEEEcccCCC
Q 047163 555 LEDCPRND--I-AILRQLKKLEILRLRHSYTERL-PLEIGQLTRLRLLDLSNCWRLKVIAPNVISKLSRLEELYMGNSFP 630 (658)
Q Consensus 555 L~~~~~~~--l-~~~~~l~~L~~L~l~~~~~~~l-p~~~~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~ 630 (658)
+++|.+.. + ..+..+++|++|++++|.+..+ |..+.++++|++|++++| .++.+++..+..+++|++|++++|
T Consensus 157 l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N-- 233 (306)
T 2z66_A 157 MAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN-NFFSLDTFPYKCLNSLQVLDYSLN-- 233 (306)
T ss_dssp CTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCSBCCSGGGTTCTTCCEEECTTS--
T ss_pred CCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCC-ccCccChhhccCcccCCEeECCCC--
Confidence 99998875 3 6788999999999999999888 577899999999999999 888888877899999999999995
Q ss_pred CcccccCCCccchhhcC-CCCccccCCCC
Q 047163 631 KWDKVEGGSNASLAELK-GLSKLDTGHNR 658 (658)
Q Consensus 631 ~~~~~~~~~~~~l~~l~-~L~~L~l~~N~ 658 (658)
.+.+..|..+..++ +|+.|++++|.
T Consensus 234 ---~l~~~~~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 234 ---HIMTSKKQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp ---CCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred ---CCcccCHHHHHhhhccCCEEEccCCC
Confidence 47888888888884 99999999984
No 30
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.60 E-value=1.7e-15 Score=154.02 Aligned_cols=170 Identities=17% Similarity=0.225 Sum_probs=81.7
Q ss_pred CceEEeccCCCCC-cCCCcc-CCCCCceEEEecCCCCCCccchHHhcCCCCCcEEEccCCCCC-CCccccccCC-CcceE
Q 047163 478 GPIAISLPHRDIQ-ELPERL-QCPNLQLFLFFGKGYGPMQISDLFFEGTKELKDLSLTRIPFS-SLPSSLGSLI-NLGTL 553 (658)
Q Consensus 478 ~~~~l~l~~~~~~-~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~lp~~i~~l~-~L~~L 553 (658)
+++++.+.+|.+. .+|..+ .+++|++|++++|... ..+|. .+..+++|++|++++|.+. .+|..++.++ +|++|
T Consensus 102 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~-~~~p~-~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L 179 (313)
T 1ogq_A 102 QLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALS-GTLPP-SISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSM 179 (313)
T ss_dssp TCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEE-SCCCG-GGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEE
T ss_pred CCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccC-CcCCh-HHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEE
Confidence 3444444444443 233222 3444444444444311 01222 2344444444444444444 3444444444 44444
Q ss_pred EccCCCCCCc--hhhhccCCCcEEEccCccCCc-cchhhcCCCCCcEEcccCcccccccChhhhcCCCCCcEEEcccCCC
Q 047163 554 CLEDCPRNDI--AILRQLKKLEILRLRHSYTER-LPLEIGQLTRLRLLDLSNCWRLKVIAPNVISKLSRLEELYMGNSFP 630 (658)
Q Consensus 554 ~L~~~~~~~l--~~~~~l~~L~~L~l~~~~~~~-lp~~~~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~ 630 (658)
++++|.+... ..+..+. |++|++++|.+.. .|..+.++++|+.|++++| .++..++. +..+++|++|++++|
T Consensus 180 ~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~-~~~l~~L~~L~Ls~N-- 254 (313)
T 1ogq_A 180 TISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKN-SLAFDLGK-VGLSKNLNGLDLRNN-- 254 (313)
T ss_dssp ECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSS-EECCBGGG-CCCCTTCCEEECCSS--
T ss_pred ECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCC-ceeeecCc-ccccCCCCEEECcCC--
Confidence 4444443321 3333333 4444444443332 2444555555555555555 45444444 455566666666653
Q ss_pred CcccccCCCccchhhcCCCCccccCCC
Q 047163 631 KWDKVEGGSNASLAELKGLSKLDTGHN 657 (658)
Q Consensus 631 ~~~~~~~~~~~~l~~l~~L~~L~l~~N 657 (658)
.+++..|..+..+++|+.|++++|
T Consensus 255 ---~l~~~~p~~l~~l~~L~~L~Ls~N 278 (313)
T 1ogq_A 255 ---RIYGTLPQGLTQLKFLHSLNVSFN 278 (313)
T ss_dssp ---CCEECCCGGGGGCTTCCEEECCSS
T ss_pred ---cccCcCChHHhcCcCCCEEECcCC
Confidence 356666777777777777777766
No 31
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.58 E-value=5.7e-15 Score=159.68 Aligned_cols=172 Identities=19% Similarity=0.211 Sum_probs=127.5
Q ss_pred CceEEeccCCCCCcCCC--ccCCCCCceEEEecCCCCCCccchHHhcCCCCCcEEEccCCCCCCCccc-cccCCCcceEE
Q 047163 478 GPIAISLPHRDIQELPE--RLQCPNLQLFLFFGKGYGPMQISDLFFEGTKELKDLSLTRIPFSSLPSS-LGSLINLGTLC 554 (658)
Q Consensus 478 ~~~~l~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~-i~~l~~L~~L~ 554 (658)
+++.|.+.+|.+..++. ...+++|+.|++++|. ...+++..|.++++|++|+|++|.+..+|.. +..+++|++|+
T Consensus 33 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~--i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 110 (477)
T 2id5_A 33 ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENI--VSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLD 110 (477)
T ss_dssp TCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSC--CCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEE
T ss_pred CCcEEECCCCccceECHhHccCCCCCCEEECCCCc--cCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEE
Confidence 67888888888877643 2378888888888875 4445445577888888888888888877654 67788888888
Q ss_pred ccCCCCCCc--hhhhccCCCcEEEccCccCCcc-chhhcCCCCCcEEcccCcccccccChhhhcCCCCCcEEEcccCCCC
Q 047163 555 LEDCPRNDI--AILRQLKKLEILRLRHSYTERL-PLEIGQLTRLRLLDLSNCWRLKVIAPNVISKLSRLEELYMGNSFPK 631 (658)
Q Consensus 555 L~~~~~~~l--~~~~~l~~L~~L~l~~~~~~~l-p~~~~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~~ 631 (658)
|++|.+..+ ..+..+++|++|++++|.+..+ |..+.++++|++|++++| .++.+++..+.++++|+.|++++|.
T Consensus 111 Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L~l~~n~-- 187 (477)
T 2id5_A 111 ISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKC-NLTSIPTEALSHLHGLIVLRLRHLN-- 187 (477)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESC-CCSSCCHHHHTTCTTCCEEEEESCC--
T ss_pred CCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCC-cCcccChhHhcccCCCcEEeCCCCc--
Confidence 888887766 5677888888888888877766 456778888888888888 7777877777788888888887743
Q ss_pred cccccCCCccchhhcCCCCccccCCC
Q 047163 632 WDKVEGGSNASLAELKGLSKLDTGHN 657 (658)
Q Consensus 632 ~~~~~~~~~~~l~~l~~L~~L~l~~N 657 (658)
+.+..+..+..+++|+.|++++|
T Consensus 188 ---i~~~~~~~~~~l~~L~~L~l~~~ 210 (477)
T 2id5_A 188 ---INAIRDYSFKRLYRLKVLEISHW 210 (477)
T ss_dssp ---CCEECTTCSCSCTTCCEEEEECC
T ss_pred ---CcEeChhhcccCcccceeeCCCC
Confidence 44445556666666666666554
No 32
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.58 E-value=1.1e-14 Score=166.75 Aligned_cols=84 Identities=21% Similarity=0.370 Sum_probs=62.2
Q ss_pred cCCCcEEEccCccCC-ccchhhcCCCCCcEEcccCcccccccChhhhcCCCCCcEEEcccCCCCcccccCCCccchhhcC
Q 047163 569 LKKLEILRLRHSYTE-RLPLEIGQLTRLRLLDLSNCWRLKVIAPNVISKLSRLEELYMGNSFPKWDKVEGGSNASLAELK 647 (658)
Q Consensus 569 l~~L~~L~l~~~~~~-~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~ 647 (658)
+++|++|++++|.+. .+|..++++++|+.|++++| .+++..|..++++++|++|++++ |+++|.+|..+..++
T Consensus 631 l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N-~l~g~ip~~l~~L~~L~~LdLs~-----N~l~g~ip~~l~~l~ 704 (768)
T 3rgz_A 631 NGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHN-DISGSIPDEVGDLRGLNILDLSS-----NKLDGRIPQAMSALT 704 (768)
T ss_dssp SBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSS-CCCSCCCGGGGGCTTCCEEECCS-----SCCEECCCGGGGGCC
T ss_pred cccccEEECcCCcccccCCHHHhccccCCEEeCcCC-ccCCCCChHHhCCCCCCEEECCC-----CcccCcCChHHhCCC
Confidence 456677777777554 56777788888888888887 67655555578888888888877 447788888888888
Q ss_pred CCCccccCCCC
Q 047163 648 GLSKLDTGHNR 658 (658)
Q Consensus 648 ~L~~L~l~~N~ 658 (658)
+|+.|++++|+
T Consensus 705 ~L~~L~ls~N~ 715 (768)
T 3rgz_A 705 MLTEIDLSNNN 715 (768)
T ss_dssp CCSEEECCSSE
T ss_pred CCCEEECcCCc
Confidence 88888888774
No 33
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.58 E-value=2.3e-14 Score=136.41 Aligned_cols=164 Identities=19% Similarity=0.251 Sum_probs=112.2
Q ss_pred EEeccCCCCCcCCCccCCCCCceEEEecCCCCCCccchHHhcCCCCCcEEEccCCCCCCCccc-cccCCCcceEEccCCC
Q 047163 481 AISLPHRDIQELPERLQCPNLQLFLFFGKGYGPMQISDLFFEGTKELKDLSLTRIPFSSLPSS-LGSLINLGTLCLEDCP 559 (658)
Q Consensus 481 ~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~-i~~l~~L~~L~L~~~~ 559 (658)
.+....+.+..+|... .++|+.|.+++|. ...++...+..+++|++|++++|.+..+|.. +..+++|++|++++|.
T Consensus 11 ~v~c~~~~l~~~p~~~-~~~l~~L~l~~n~--l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 87 (208)
T 2o6s_A 11 TVECYSQGRTSVPTGI-PAQTTYLDLETNS--LKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87 (208)
T ss_dssp EEECCSSCCSSCCSCC-CTTCSEEECCSSC--CCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEecCCCccCCCCCC-CCCCcEEEcCCCc--cCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc
Confidence 4555556666665433 4577777777775 3345555667777788888887777776554 4667778888887777
Q ss_pred CCCc--hhhhccCCCcEEEccCccCCccchh-hcCCCCCcEEcccCcccccccChhhhcCCCCCcEEEcccCCC------
Q 047163 560 RNDI--AILRQLKKLEILRLRHSYTERLPLE-IGQLTRLRLLDLSNCWRLKVIAPNVISKLSRLEELYMGNSFP------ 630 (658)
Q Consensus 560 ~~~l--~~~~~l~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~------ 630 (658)
+..+ ..+..+++|++|++++|.+..+|.. +.++++|++|++++| .++.+++..+..+++|++|++++|..
T Consensus 88 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 166 (208)
T 2o6s_A 88 LQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPG 166 (208)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSCCBCCCTTT
T ss_pred CCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCC-ccceeCHHHhccCCCccEEEecCCCeecCCCC
Confidence 7766 3367777788888877777777654 567777888888777 67777776667777788887777542
Q ss_pred ------CcccccCCCccchhhcCC
Q 047163 631 ------KWDKVEGGSNASLAELKG 648 (658)
Q Consensus 631 ------~~~~~~~~~~~~l~~l~~ 648 (658)
..|.++|.+|..++.++.
T Consensus 167 l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 167 IRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp THHHHHHHHHCTTTBBCTTSSBCT
T ss_pred HHHHHHHHHhCCceeeccCccccC
Confidence 124566777777766653
No 34
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.58 E-value=2.2e-14 Score=138.69 Aligned_cols=147 Identities=23% Similarity=0.304 Sum_probs=129.1
Q ss_pred ceEEeccCCCCCcCCCccCCCCCceEEEecCCCCCCccchHHhcCCCCCcEEEccCCCCCCCccc-cccCCCcceEEccC
Q 047163 479 PIAISLPHRDIQELPERLQCPNLQLFLFFGKGYGPMQISDLFFEGTKELKDLSLTRIPFSSLPSS-LGSLINLGTLCLED 557 (658)
Q Consensus 479 ~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~-i~~l~~L~~L~L~~ 557 (658)
...+..+++.+..+|.... ++|+.|.+++|. ...+++..|..+++|++|+|++|.+..+|.. +..+++|++|+|++
T Consensus 21 ~~~v~c~~~~l~~ip~~~~-~~L~~L~Ls~n~--i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGIP-TNAQILYLHDNQ--ITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TTEEECTTSCCSSCCSCCC-TTCSEEECCSSC--CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEeEccCCCcCccCCCCC-CCCCEEEcCCCc--cCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence 3467777888888887554 899999999997 4445556688999999999999999988754 68899999999999
Q ss_pred CCCCCc--hhhhccCCCcEEEccCccCCccchhhcCCCCCcEEcccCcccccccChhhhcCCCCCcEEEcccCC
Q 047163 558 CPRNDI--AILRQLKKLEILRLRHSYTERLPLEIGQLTRLRLLDLSNCWRLKVIAPNVISKLSRLEELYMGNSF 629 (658)
Q Consensus 558 ~~~~~l--~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~ 629 (658)
|.+..+ ..+..+++|++|+|++|.+..+|..+.++++|++|++++| .++.+++..+..+++|++|++++|.
T Consensus 98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQN-QLKSIPHGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred CcCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCC
Confidence 999988 3478999999999999999999999999999999999999 8999998878999999999999965
No 35
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.58 E-value=2.2e-14 Score=147.07 Aligned_cols=80 Identities=20% Similarity=0.218 Sum_probs=39.9
Q ss_pred CCcEEEccCccCCcc-chhhcCCCCCcEEcccCcccccccChhhhcCCCCCcEEEcccCCCCcccccCCCccchhhcCCC
Q 047163 571 KLEILRLRHSYTERL-PLEIGQLTRLRLLDLSNCWRLKVIAPNVISKLSRLEELYMGNSFPKWDKVEGGSNASLAELKGL 649 (658)
Q Consensus 571 ~L~~L~l~~~~~~~l-p~~~~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~L 649 (658)
+|++|++++|.+..+ |..+.++++|++|++++| .++.+++..+..+++|+.|++++|. ++ .+|..+..+++|
T Consensus 193 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~N~-----l~-~lp~~l~~l~~L 265 (330)
T 1xku_A 193 SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFN-SISAVDNGSLANTPHLRELHLNNNK-----LV-KVPGGLADHKYI 265 (330)
T ss_dssp TCSEEECTTSCCCEECTGGGTTCTTCCEEECCSS-CCCEECTTTGGGSTTCCEEECCSSC-----CS-SCCTTTTTCSSC
T ss_pred cCCEEECCCCcCCccCHHHhcCCCCCCEEECCCC-cCceeChhhccCCCCCCEEECCCCc-----Cc-cCChhhccCCCc
Confidence 333333333433333 234445555555555555 4554444445555555555555532 33 445556666666
Q ss_pred CccccCCC
Q 047163 650 SKLDTGHN 657 (658)
Q Consensus 650 ~~L~l~~N 657 (658)
+.|++++|
T Consensus 266 ~~L~l~~N 273 (330)
T 1xku_A 266 QVVYLHNN 273 (330)
T ss_dssp CEEECCSS
T ss_pred CEEECCCC
Confidence 66666655
No 36
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.57 E-value=3.1e-14 Score=146.01 Aligned_cols=172 Identities=16% Similarity=0.209 Sum_probs=114.5
Q ss_pred CceEEeccCCCCCcCCCc--cCCCCCceEEEecCCCCCCccchHHhcCCCCCcEEEccCCCCCCCccccccCCCcceEEc
Q 047163 478 GPIAISLPHRDIQELPER--LQCPNLQLFLFFGKGYGPMQISDLFFEGTKELKDLSLTRIPFSSLPSSLGSLINLGTLCL 555 (658)
Q Consensus 478 ~~~~l~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~L 555 (658)
+++.+.+.+|.+..++.. ..+++|+.|.+.+|......+....+.++++|++|++++|.+..+|..+. ++|++|++
T Consensus 122 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~--~~L~~L~l 199 (330)
T 1xku_A 122 TLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP--PSLTELHL 199 (330)
T ss_dssp TCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCC--TTCSEEEC
T ss_pred cccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCcccc--ccCCEEEC
Confidence 344444444444444332 24555666666555432222333345666666666666666666665543 67777777
Q ss_pred cCCCCCCc--hhhhccCCCcEEEccCccCCccch-hhcCCCCCcEEcccCcccccccChhhhcCCCCCcEEEcccCCCCc
Q 047163 556 EDCPRNDI--AILRQLKKLEILRLRHSYTERLPL-EIGQLTRLRLLDLSNCWRLKVIAPNVISKLSRLEELYMGNSFPKW 632 (658)
Q Consensus 556 ~~~~~~~l--~~~~~l~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~~~ 632 (658)
++|.+..+ ..+..+++|++|++++|.+..++. .+..+++|++|++++| .++.+|.. +..+++|++|++++|.
T Consensus 200 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~lp~~-l~~l~~L~~L~l~~N~--- 274 (330)
T 1xku_A 200 DGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNN-KLVKVPGG-LADHKYIQVVYLHNNN--- 274 (330)
T ss_dssp TTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSS-CCSSCCTT-TTTCSSCCEEECCSSC---
T ss_pred CCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCC-cCccCChh-hccCCCcCEEECCCCc---
Confidence 77777665 578888889999999888887764 6888889999999988 78888776 7888899999998854
Q ss_pred ccccCCCccchh------hcCCCCccccCCCC
Q 047163 633 DKVEGGSNASLA------ELKGLSKLDTGHNR 658 (658)
Q Consensus 633 ~~~~~~~~~~l~------~l~~L~~L~l~~N~ 658 (658)
+++..+..+. ...+|+.|++.+|.
T Consensus 275 --i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~ 304 (330)
T 1xku_A 275 --ISAIGSNDFCPPGYNTKKASYSGVSLFSNP 304 (330)
T ss_dssp --CCCCCTTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred --CCccChhhcCCcccccccccccceEeecCc
Confidence 5544444443 34678888888773
No 37
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.57 E-value=3.3e-15 Score=147.71 Aligned_cols=142 Identities=22% Similarity=0.284 Sum_probs=115.1
Q ss_pred CceEEeccCCCCCcCCCccCCCCCceEEEecCCCCCCccchHHhcCCCCCcEEEccCCCCCCCccccccCCCcceEEccC
Q 047163 478 GPIAISLPHRDIQELPERLQCPNLQLFLFFGKGYGPMQISDLFFEGTKELKDLSLTRIPFSSLPSSLGSLINLGTLCLED 557 (658)
Q Consensus 478 ~~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~L~~ 557 (658)
+++.+.+.+|.+..++....+++|+.|.+++|. ...++. +..+++|++|++++|.+..+|.... ++|++|++++
T Consensus 42 ~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~--i~~~~~--l~~l~~L~~L~L~~N~l~~l~~~~~--~~L~~L~L~~ 115 (263)
T 1xeu_A 42 GVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQ--ISDLSP--LKDLTKLEELSVNRNRLKNLNGIPS--ACLSRLFLDN 115 (263)
T ss_dssp TCSEEECTTSCCCCCTTGGGCTTCCEEECCSSC--CCCCGG--GTTCSSCCEEECCSSCCSCCTTCCC--SSCCEEECCS
T ss_pred cCcEEECcCCCcccchHHhhCCCCCEEECCCCc--cCCChh--hccCCCCCEEECCCCccCCcCcccc--CcccEEEccC
Confidence 788888888888888866688888899888886 344554 6788889999999988888775433 8888999998
Q ss_pred CCCCCchhhhccCCCcEEEccCccCCccchhhcCCCCCcEEcccCcccccccChhhhcCCCCCcEEEcccCC
Q 047163 558 CPRNDIAILRQLKKLEILRLRHSYTERLPLEIGQLTRLRLLDLSNCWRLKVIAPNVISKLSRLEELYMGNSF 629 (658)
Q Consensus 558 ~~~~~l~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~ 629 (658)
|.+..++.+..+++|++|++++|.+..+| .++.+++|++|++++| .++.+ ..+..+++|+.|++++|.
T Consensus 116 N~l~~~~~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N-~i~~~--~~l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 116 NELRDTDSLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGN-EITNT--GGLTRLKKVNWIDLTGQK 183 (263)
T ss_dssp SCCSBSGGGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTS-CCCBC--TTSTTCCCCCEEEEEEEE
T ss_pred CccCCChhhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCC-cCcch--HHhccCCCCCEEeCCCCc
Confidence 88888888888888999999888888887 5888888999999888 77777 237888888999888843
No 38
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.57 E-value=2.8e-14 Score=140.13 Aligned_cols=149 Identities=21% Similarity=0.310 Sum_probs=132.7
Q ss_pred CceEEeccCCCCCcCCCc--cCCCCCceEEEecCCCCCCccchHHhcCCCCCcEEEccCCCCCCCcc-ccccCCCcceEE
Q 047163 478 GPIAISLPHRDIQELPER--LQCPNLQLFLFFGKGYGPMQISDLFFEGTKELKDLSLTRIPFSSLPS-SLGSLINLGTLC 554 (658)
Q Consensus 478 ~~~~l~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~ 554 (658)
.++.+.+.+|.+..++.. ..+++|+.|++++|. ...+++..+..+++|++|++++|.+..+|. .+..+++|++|+
T Consensus 36 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~--l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 113 (251)
T 3m19_A 36 DTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQ--LQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLY 113 (251)
T ss_dssp TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC--CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCEEEccCCCcCccCHhHhcCcccCCEEECCCCc--CCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEE
Confidence 789999999999887653 379999999999996 445666678899999999999999998864 568899999999
Q ss_pred ccCCCCCCc--hhhhccCCCcEEEccCccCCccch-hhcCCCCCcEEcccCcccccccChhhhcCCCCCcEEEcccCC
Q 047163 555 LEDCPRNDI--AILRQLKKLEILRLRHSYTERLPL-EIGQLTRLRLLDLSNCWRLKVIAPNVISKLSRLEELYMGNSF 629 (658)
Q Consensus 555 L~~~~~~~l--~~~~~l~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~ 629 (658)
|++|.+..+ ..+..+++|++|+|++|.+..+|. .++++++|++|++++| .++.+++..+..+++|++|++++|.
T Consensus 114 L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 114 LGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTN-QLQSVPHGAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred cCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCc
Confidence 999999988 347899999999999999999986 6889999999999999 8999998878999999999999965
No 39
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.57 E-value=2.4e-15 Score=155.86 Aligned_cols=173 Identities=20% Similarity=0.257 Sum_probs=135.2
Q ss_pred CceEEeccCCCCCcCCC--ccCCCCCceEEEecCCCCCCccchHHhcCCCCCcEEEccCCCCCCCccc-cccCCCcceEE
Q 047163 478 GPIAISLPHRDIQELPE--RLQCPNLQLFLFFGKGYGPMQISDLFFEGTKELKDLSLTRIPFSSLPSS-LGSLINLGTLC 554 (658)
Q Consensus 478 ~~~~l~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~-i~~l~~L~~L~ 554 (658)
+++.+.+++|.+..++. ...+++|+.|++++|. ...+++..|.++++|++|++++|.+..+|.. +..+++|++|+
T Consensus 53 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~--l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 130 (353)
T 2z80_A 53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNG--INTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLN 130 (353)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC--CCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEE
T ss_pred cCcEEECCCCcCcccCHHHhccCCCCCEEECCCCc--cCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEE
Confidence 78889999888887776 3478899999998885 4445555678888999999999998888765 78888999999
Q ss_pred ccCCCCCCch---hhhccCCCcEEEccCc-cCCccc-hhhcCCCCCcEEcccCcccccccChhhhcCCCCCcEEEcccCC
Q 047163 555 LEDCPRNDIA---ILRQLKKLEILRLRHS-YTERLP-LEIGQLTRLRLLDLSNCWRLKVIAPNVISKLSRLEELYMGNSF 629 (658)
Q Consensus 555 L~~~~~~~l~---~~~~l~~L~~L~l~~~-~~~~lp-~~~~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~ 629 (658)
+++|.+..++ .+..+++|++|++++| .+..+| ..++++++|++|++++| .++..++..++++++|++|++++|.
T Consensus 131 L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L~l~~n~ 209 (353)
T 2z80_A 131 LLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDAS-DLQSYEPKSLKSIQNVSHLILHMKQ 209 (353)
T ss_dssp CTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEET-TCCEECTTTTTTCSEEEEEEEECSC
T ss_pred CCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCC-CcCccCHHHHhccccCCeecCCCCc
Confidence 9998888773 4788889999999888 577774 56888889999999988 7777766668888889999988854
Q ss_pred CCcccccCCCccchhhcCCCCccccCCCC
Q 047163 630 PKWDKVEGGSNASLAELKGLSKLDTGHNR 658 (658)
Q Consensus 630 ~~~~~~~~~~~~~l~~l~~L~~L~l~~N~ 658 (658)
+....+..+..+++|+.|++++|+
T Consensus 210 -----l~~~~~~~~~~~~~L~~L~L~~n~ 233 (353)
T 2z80_A 210 -----HILLLEIFVDVTSSVECLELRDTD 233 (353)
T ss_dssp -----STTHHHHHHHHTTTEEEEEEESCB
T ss_pred -----cccchhhhhhhcccccEEECCCCc
Confidence 432223334567888888888773
No 40
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.57 E-value=1.6e-14 Score=160.41 Aligned_cols=171 Identities=18% Similarity=0.214 Sum_probs=96.3
Q ss_pred CceEEeccCCCCCcCCCcc--CCCCCceEEEecCCCCCCccchHHhcCCCCCcEEEccCCCCCCCc-cccccCCCcceEE
Q 047163 478 GPIAISLPHRDIQELPERL--QCPNLQLFLFFGKGYGPMQISDLFFEGTKELKDLSLTRIPFSSLP-SSLGSLINLGTLC 554 (658)
Q Consensus 478 ~~~~l~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp-~~i~~l~~L~~L~ 554 (658)
+++.|.+.+|.+..+++.. .+++|++|++++|. ...+|..+|.++++|++|++++|.+..+| ..++.+++|++|+
T Consensus 100 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~--l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 177 (597)
T 3oja_B 100 TIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERND--LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQ 177 (597)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC--CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEE
T ss_pred CCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCC--CCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEE
Confidence 5666666666666555432 56667777766664 33555555666677777777777666543 3466666677776
Q ss_pred ccCCCCCCc-------------------------------------------------------------hhhhccCCCc
Q 047163 555 LEDCPRNDI-------------------------------------------------------------AILRQLKKLE 573 (658)
Q Consensus 555 L~~~~~~~l-------------------------------------------------------------~~~~~l~~L~ 573 (658)
+++|.+..+ +.++.+++|+
T Consensus 178 L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~ 257 (597)
T 3oja_B 178 LSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLV 257 (597)
T ss_dssp CTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGGGCTTCS
T ss_pred CcCCCCCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCChhhccCCCCC
Confidence 666654432 1133344444
Q ss_pred EEEccCccCCcc-chhhcCCCCCcEEcccCcccccccChhhhcCCCCCcEEEcccCCCCcccccCCCccchhhcCCCCcc
Q 047163 574 ILRLRHSYTERL-PLEIGQLTRLRLLDLSNCWRLKVIAPNVISKLSRLEELYMGNSFPKWDKVEGGSNASLAELKGLSKL 652 (658)
Q Consensus 574 ~L~l~~~~~~~l-p~~~~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L 652 (658)
+|+|++|.+..+ |..++++++|+.|++++| .++.+|.. ++.+++|+.|++++|. +. .+|..+..+++|+.|
T Consensus 258 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~-~~~l~~L~~L~Ls~N~-----l~-~i~~~~~~l~~L~~L 329 (597)
T 3oja_B 258 EVDLSYNELEKIMYHPFVKMQRLERLYISNN-RLVALNLY-GQPIPTLKVLDLSHNH-----LL-HVERNQPQFDRLENL 329 (597)
T ss_dssp EEECCSSCCCEEESGGGTTCSSCCEEECTTS-CCCEEECS-SSCCTTCCEEECCSSC-----CC-CCGGGHHHHTTCSEE
T ss_pred EEECCCCccCCCCHHHhcCccCCCEEECCCC-CCCCCCcc-cccCCCCcEEECCCCC-----CC-ccCcccccCCCCCEE
Confidence 444444444433 344455555555555555 44444433 3445555555555532 33 456666777777777
Q ss_pred ccCCCC
Q 047163 653 DTGHNR 658 (658)
Q Consensus 653 ~l~~N~ 658 (658)
++++|+
T Consensus 330 ~L~~N~ 335 (597)
T 3oja_B 330 YLDHNS 335 (597)
T ss_dssp ECCSSC
T ss_pred ECCCCC
Confidence 777663
No 41
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.57 E-value=4.7e-15 Score=153.67 Aligned_cols=170 Identities=21% Similarity=0.195 Sum_probs=147.6
Q ss_pred EEeccCCCCCcCCCccCCCCCceEEEecCCCCCCccchHHhcCCCCCcEEEccCCCCCCC-ccccccCCCcceEEccCCC
Q 047163 481 AISLPHRDIQELPERLQCPNLQLFLFFGKGYGPMQISDLFFEGTKELKDLSLTRIPFSSL-PSSLGSLINLGTLCLEDCP 559 (658)
Q Consensus 481 ~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~L~~~~ 559 (658)
.....++.++.+|.... ++|+.|++++|. ...++...+.++++|++|++++|.+..+ |..+..+++|++|++++|.
T Consensus 35 ~c~~~~~~l~~iP~~~~-~~L~~L~l~~n~--i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 111 (353)
T 2z80_A 35 ICKGSSGSLNSIPSGLT-EAVKSLDLSNNR--ITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY 111 (353)
T ss_dssp EEECCSTTCSSCCTTCC-TTCCEEECTTSC--CCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EeeCCCCCccccccccc-ccCcEEECCCCc--CcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCc
Confidence 35667788888887543 699999999996 4557776689999999999999999976 4569999999999999999
Q ss_pred CCCc-h-hhhccCCCcEEEccCccCCccch--hhcCCCCCcEEcccCcccccccChhhhcCCCCCcEEEcccCCCCcccc
Q 047163 560 RNDI-A-ILRQLKKLEILRLRHSYTERLPL--EIGQLTRLRLLDLSNCWRLKVIAPNVISKLSRLEELYMGNSFPKWDKV 635 (658)
Q Consensus 560 ~~~l-~-~~~~l~~L~~L~l~~~~~~~lp~--~~~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~~~~~~ 635 (658)
+..+ + .++.+++|++|++++|.+..+|. .+.++++|++|++++|..+..+++..++++++|++|++++|. +
T Consensus 112 l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~-----l 186 (353)
T 2z80_A 112 LSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD-----L 186 (353)
T ss_dssp CSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT-----C
T ss_pred CCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCC-----c
Confidence 9988 3 48999999999999999999987 788999999999999855888887779999999999999954 7
Q ss_pred cCCCccchhhcCCCCccccCCCC
Q 047163 636 EGGSNASLAELKGLSKLDTGHNR 658 (658)
Q Consensus 636 ~~~~~~~l~~l~~L~~L~l~~N~ 658 (658)
.+..|..+..+++|++|++++|+
T Consensus 187 ~~~~~~~l~~l~~L~~L~l~~n~ 209 (353)
T 2z80_A 187 QSYEPKSLKSIQNVSHLILHMKQ 209 (353)
T ss_dssp CEECTTTTTTCSEEEEEEEECSC
T ss_pred CccCHHHHhccccCCeecCCCCc
Confidence 77778999999999999999884
No 42
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.56 E-value=1.4e-14 Score=139.13 Aligned_cols=146 Identities=21% Similarity=0.280 Sum_probs=123.9
Q ss_pred eEEeccCCCCCcCCCccCCCCCceEEEecCCCCCCccchHHhcCCCCCcEEEccCCCCCCC-ccccccCCCcceEEccCC
Q 047163 480 IAISLPHRDIQELPERLQCPNLQLFLFFGKGYGPMQISDLFFEGTKELKDLSLTRIPFSSL-PSSLGSLINLGTLCLEDC 558 (658)
Q Consensus 480 ~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~L~~~ 558 (658)
+.+.+.++.+..+|.... ++++.|.+.+|. ...++...|..+++|++|+|++|.+..+ |..+..+++|++|+|++|
T Consensus 14 ~~v~c~~~~l~~iP~~l~-~~l~~L~l~~n~--i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP-ETITEIRLEQNT--IKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCSSCCSSCC-TTCCEEECCSSC--CCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcCcCCCccC-cCCCEEECCCCc--CCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 456777888888887554 789999999986 4556666688899999999999999876 778899999999999999
Q ss_pred CCCCc--hhhhccCCCcEEEccCccCCcc-chhhcCCCCCcEEcccCcccccccChhhhcCCCCCcEEEcccCC
Q 047163 559 PRNDI--AILRQLKKLEILRLRHSYTERL-PLEIGQLTRLRLLDLSNCWRLKVIAPNVISKLSRLEELYMGNSF 629 (658)
Q Consensus 559 ~~~~l--~~~~~l~~L~~L~l~~~~~~~l-p~~~~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~ 629 (658)
.+..+ ..+..+++|++|+|++|.+..+ |..+..+++|++|++++| .++.+++..+..+++|++|++++|.
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDN-KLQTIAKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCC-cCCEECHHHHhCCCCCCEEEeCCCC
Confidence 99888 3478899999999999998888 467889999999999999 8999988878889999999999865
No 43
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.56 E-value=1.5e-14 Score=152.04 Aligned_cols=107 Identities=19% Similarity=0.175 Sum_probs=79.9
Q ss_pred CceEEeccCCCCCcCCC--ccCCCCCceEEEecCCCCCCccchHHhcCCCCCcEEEccCCCCCCCccc-cccCCCcceEE
Q 047163 478 GPIAISLPHRDIQELPE--RLQCPNLQLFLFFGKGYGPMQISDLFFEGTKELKDLSLTRIPFSSLPSS-LGSLINLGTLC 554 (658)
Q Consensus 478 ~~~~l~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~-i~~l~~L~~L~ 554 (658)
+++.+.+.+|.+..++. ...+++|+.|++.+|. ...+++..+.++++|++|++++|.+..+|.. +..+++|++|+
T Consensus 70 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~--l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~ 147 (390)
T 3o6n_A 70 QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA--IRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLS 147 (390)
T ss_dssp CCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC--CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cCcEEECCCCcccccChhhccCCCCcCEEECCCCC--CCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEE
Confidence 67888888887776654 2377888888888875 4445555677788888888888888887766 46788888888
Q ss_pred ccCCCCCCc--hhhhccCCCcEEEccCccCCccc
Q 047163 555 LEDCPRNDI--AILRQLKKLEILRLRHSYTERLP 586 (658)
Q Consensus 555 L~~~~~~~l--~~~~~l~~L~~L~l~~~~~~~lp 586 (658)
+++|.+..+ ..+..+++|++|++++|.+..++
T Consensus 148 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 181 (390)
T 3o6n_A 148 MSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD 181 (390)
T ss_dssp CCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC
T ss_pred CCCCccCccChhhccCCCCCCEEECCCCcCCccc
Confidence 888887776 45778888888888888666543
No 44
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.56 E-value=2.8e-14 Score=149.98 Aligned_cols=171 Identities=18% Similarity=0.205 Sum_probs=120.4
Q ss_pred CceEEeccCCCCCcCCCc--cCCCCCceEEEecCCCCCCccchHHhcCCCCCcEEEccCCCCCCCc-cccccCCCcceEE
Q 047163 478 GPIAISLPHRDIQELPER--LQCPNLQLFLFFGKGYGPMQISDLFFEGTKELKDLSLTRIPFSSLP-SSLGSLINLGTLC 554 (658)
Q Consensus 478 ~~~~l~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp-~~i~~l~~L~~L~ 554 (658)
+++.+.+.+|.+..+++. ..+++|+.|.+.+|. ...+|...|..+++|++|++++|.+..++ ..+..+++|++|+
T Consensus 94 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~--l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 171 (390)
T 3o6n_A 94 TIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERND--LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQ 171 (390)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC--CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEE
T ss_pred CcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCc--cCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEE
Confidence 799999999999887654 389999999999996 45678877889999999999999998764 5688899999999
Q ss_pred ccCCCCCCc--h-----------------------------------------------------------hhhccCCCc
Q 047163 555 LEDCPRNDI--A-----------------------------------------------------------ILRQLKKLE 573 (658)
Q Consensus 555 L~~~~~~~l--~-----------------------------------------------------------~~~~l~~L~ 573 (658)
+++|.+..+ . .+..+++|+
T Consensus 172 l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~ 251 (390)
T 3o6n_A 172 LSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLV 251 (390)
T ss_dssp CCSSCCSBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCCGGGGGCTTCS
T ss_pred CCCCcCCccccccccccceeecccccccccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCcccHHHcCCCCcc
Confidence 999876543 1 133445555
Q ss_pred EEEccCccCCcc-chhhcCCCCCcEEcccCcccccccChhhhcCCCCCcEEEcccCCCCcccccCCCccchhhcCCCCcc
Q 047163 574 ILRLRHSYTERL-PLEIGQLTRLRLLDLSNCWRLKVIAPNVISKLSRLEELYMGNSFPKWDKVEGGSNASLAELKGLSKL 652 (658)
Q Consensus 574 ~L~l~~~~~~~l-p~~~~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L 652 (658)
+|++++|.+..+ |..+.++++|++|++++| .++.++.. ++.+++|++|++++|. +. .+|..+..+++|+.|
T Consensus 252 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~-~~~l~~L~~L~L~~n~-----l~-~~~~~~~~l~~L~~L 323 (390)
T 3o6n_A 252 EVDLSYNELEKIMYHPFVKMQRLERLYISNN-RLVALNLY-GQPIPTLKVLDLSHNH-----LL-HVERNQPQFDRLENL 323 (390)
T ss_dssp EEECCSSCCCEEESGGGTTCSSCCEEECCSS-CCCEEECS-SSCCTTCCEEECCSSC-----CC-CCGGGHHHHTTCSEE
T ss_pred EEECCCCcCCCcChhHccccccCCEEECCCC-cCcccCcc-cCCCCCCCEEECCCCc-----ce-ecCccccccCcCCEE
Confidence 555555555444 445555666666666665 55555443 4455666666666532 33 456667777777777
Q ss_pred ccCCCC
Q 047163 653 DTGHNR 658 (658)
Q Consensus 653 ~l~~N~ 658 (658)
++++|+
T Consensus 324 ~L~~N~ 329 (390)
T 3o6n_A 324 YLDHNS 329 (390)
T ss_dssp ECCSSC
T ss_pred ECCCCc
Confidence 777764
No 45
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.56 E-value=1.4e-14 Score=141.08 Aligned_cols=169 Identities=16% Similarity=0.087 Sum_probs=145.1
Q ss_pred CceEEeccCCC-CCcCCCc--cCCCCCceEEEec-CCCCCCccchHHhcCCCCCcEEEccCCCCCCCccccccCCCcc--
Q 047163 478 GPIAISLPHRD-IQELPER--LQCPNLQLFLFFG-KGYGPMQISDLFFEGTKELKDLSLTRIPFSSLPSSLGSLINLG-- 551 (658)
Q Consensus 478 ~~~~l~l~~~~-~~~~~~~--~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~i~~l~~L~-- 551 (658)
+++.+.+.+|. +..++.. ..+++|+.|.+.+ |. ...++...|.++++|++|++++|.+..+|. +..+++|+
T Consensus 56 ~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~--l~~i~~~~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L 132 (239)
T 2xwt_C 56 NISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRN--LTYIDPDALKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIF 132 (239)
T ss_dssp TCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETT--CCEECTTSEECCTTCCEEEEEEECCCSCCC-CTTCCBCCSE
T ss_pred CCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCC--eeEcCHHHhCCCCCCCEEeCCCCCCccccc-cccccccccc
Confidence 79999999997 8888753 3899999999998 75 556777778899999999999999999987 88888888
Q ss_pred -eEEccCC-CCCCc--hhhhccCCCc-EEEccCccCCccchhhcCCCCCcEEcccCcccccccChhhhcCC-CCCcEEEc
Q 047163 552 -TLCLEDC-PRNDI--AILRQLKKLE-ILRLRHSYTERLPLEIGQLTRLRLLDLSNCWRLKVIAPNVISKL-SRLEELYM 625 (658)
Q Consensus 552 -~L~L~~~-~~~~l--~~~~~l~~L~-~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~i~~l-~~L~~L~l 625 (658)
+|++++| .+..+ ..+..+++|+ +|++++|.+..+|......++|+.|++++|..++.+++..+..+ ++|+.|++
T Consensus 133 ~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l 212 (239)
T 2xwt_C 133 FILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDV 212 (239)
T ss_dssp EEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEEC
T ss_pred cEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEEC
Confidence 9999999 88887 4589999999 99999999999997766668999999999944999988888999 99999999
Q ss_pred ccCCCCcccccCCCccchhhcCCCCccccCCC
Q 047163 626 GNSFPKWDKVEGGSNASLAELKGLSKLDTGHN 657 (658)
Q Consensus 626 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~N 657 (658)
++|. ++ .+|.. .+++|+.|++.+|
T Consensus 213 ~~N~-----l~-~l~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 213 SQTS-----VT-ALPSK--GLEHLKELIARNT 236 (239)
T ss_dssp TTCC-----CC-CCCCT--TCTTCSEEECTTC
T ss_pred CCCc-----cc-cCChh--HhccCceeeccCc
Confidence 9854 55 34443 6889999998876
No 46
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.56 E-value=2.7e-14 Score=146.58 Aligned_cols=127 Identities=21% Similarity=0.313 Sum_probs=74.1
Q ss_pred CCCcEEEccCCCCCCCcc-ccccCCCcceEEccCCCCCC--c--hhhhcc--------------------CCCcEEEccC
Q 047163 525 KELKDLSLTRIPFSSLPS-SLGSLINLGTLCLEDCPRND--I--AILRQL--------------------KKLEILRLRH 579 (658)
Q Consensus 525 ~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~L~~~~~~~--l--~~~~~l--------------------~~L~~L~l~~ 579 (658)
++|++|++++|.+..+|. .+..+++|++|++++|.+.. . ..+..+ ++|++|++++
T Consensus 123 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~ 202 (332)
T 2ft3_A 123 SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDH 202 (332)
T ss_dssp TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCS
T ss_pred ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEECCC
Confidence 344445555554444433 24556666666666665432 1 122222 2444444444
Q ss_pred ccCCccc-hhhcCCCCCcEEcccCcccccccChhhhcCCCCCcEEEcccCCCCcccccCCCccchhhcCCCCccccCCCC
Q 047163 580 SYTERLP-LEIGQLTRLRLLDLSNCWRLKVIAPNVISKLSRLEELYMGNSFPKWDKVEGGSNASLAELKGLSKLDTGHNR 658 (658)
Q Consensus 580 ~~~~~lp-~~~~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~N~ 658 (658)
|.+..++ ..+.++++|++|++++| .++.+++..++.+++|+.|++++|. ++ .+|..+..+++|+.|++++|+
T Consensus 203 n~i~~~~~~~l~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~-----l~-~lp~~l~~l~~L~~L~l~~N~ 275 (332)
T 2ft3_A 203 NKIQAIELEDLLRYSKLYRLGLGHN-QIRMIENGSLSFLPTLRELHLDNNK-----LS-RVPAGLPDLKLLQVVYLHTNN 275 (332)
T ss_dssp SCCCCCCTTSSTTCTTCSCCBCCSS-CCCCCCTTGGGGCTTCCEEECCSSC-----CC-BCCTTGGGCTTCCEEECCSSC
T ss_pred CcCCccCHHHhcCCCCCCEEECCCC-cCCcCChhHhhCCCCCCEEECCCCc-----Ce-ecChhhhcCccCCEEECCCCC
Confidence 4444443 45666777777777777 6666666556777777777777743 44 566677778888888887774
No 47
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.56 E-value=2e-14 Score=137.98 Aligned_cols=146 Identities=14% Similarity=0.250 Sum_probs=120.3
Q ss_pred eEEeccCCCCCcCCCccCCCCCceEEEecCCCCCCcc-chHHhcCCCCCcEEEccCCCCCCCcc-ccccCCCcceEEccC
Q 047163 480 IAISLPHRDIQELPERLQCPNLQLFLFFGKGYGPMQI-SDLFFEGTKELKDLSLTRIPFSSLPS-SLGSLINLGTLCLED 557 (658)
Q Consensus 480 ~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~L~~ 557 (658)
+.+.++++.+..+|... .+.++.|.+++|. ...+ +...|..+++|++|++++|.+..++. .+..+++|++|+|++
T Consensus 14 ~~l~~s~n~l~~iP~~~-~~~~~~L~L~~N~--l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHI-PQYTAELRLNNNE--FTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCSSCCSCC-CTTCSEEECCSSC--CCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCcccCccCC-CCCCCEEEcCCCc--CCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 47888888888887644 3567889999986 3333 44557889999999999999987754 788899999999999
Q ss_pred CCCCCc--hhhhccCCCcEEEccCccCCcc-chhhcCCCCCcEEcccCcccccccChhhhcCCCCCcEEEcccCC
Q 047163 558 CPRNDI--AILRQLKKLEILRLRHSYTERL-PLEIGQLTRLRLLDLSNCWRLKVIAPNVISKLSRLEELYMGNSF 629 (658)
Q Consensus 558 ~~~~~l--~~~~~l~~L~~L~l~~~~~~~l-p~~~~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~ 629 (658)
|.+..+ ..+..+++|++|+|++|.+..+ |..+.++++|++|++++| .++.+++..+..+++|++|++++|.
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDN-QITTVAPGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTS-CCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCC-cCCEECHHHhcCCCCCCEEEecCcC
Confidence 998887 4588899999999999988888 567889999999999999 8888877778899999999998864
No 48
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.56 E-value=1.8e-14 Score=144.64 Aligned_cols=162 Identities=22% Similarity=0.312 Sum_probs=137.8
Q ss_pred EEeccCCCCCcCCCccCCCCCceEEEecCCCCCCccchHHhcCCCCCcEEEccCCCCCCCccccccCCCcceEEccCCCC
Q 047163 481 AISLPHRDIQELPERLQCPNLQLFLFFGKGYGPMQISDLFFEGTKELKDLSLTRIPFSSLPSSLGSLINLGTLCLEDCPR 560 (658)
Q Consensus 481 ~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~ 560 (658)
++.+..+.+..+.....+++|+.|.+.+|. ...++. +..+++|++|++++|.+..++. +..+++|++|++++|.+
T Consensus 28 ~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~--i~~~~~--~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l 102 (291)
T 1h6t_A 28 KDNLKKKSVTDAVTQNELNSIDQIIANNSD--IKSVQG--IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKV 102 (291)
T ss_dssp HHHTTCSCTTSEECHHHHHTCCEEECTTSC--CCCCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCC
T ss_pred HHHhcCCCcccccchhhcCcccEEEccCCC--cccChh--HhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcC
Confidence 334555565555555578899999999986 334443 6789999999999999999887 99999999999999999
Q ss_pred CCchhhhccCCCcEEEccCccCCccchhhcCCCCCcEEcccCcccccccChhhhcCCCCCcEEEcccCCCCcccccCCCc
Q 047163 561 NDIAILRQLKKLEILRLRHSYTERLPLEIGQLTRLRLLDLSNCWRLKVIAPNVISKLSRLEELYMGNSFPKWDKVEGGSN 640 (658)
Q Consensus 561 ~~l~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~ 640 (658)
..++.+..+++|++|++++|.+..+| .+..+++|++|++++| .++.++ .++.+++|++|++++|. +++..|
T Consensus 103 ~~~~~l~~l~~L~~L~L~~n~i~~~~-~l~~l~~L~~L~l~~n-~l~~~~--~l~~l~~L~~L~L~~N~-----l~~~~~ 173 (291)
T 1h6t_A 103 KDLSSLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNN-KITDIT--VLSRLTKLDTLSLEDNQ-----ISDIVP 173 (291)
T ss_dssp CCGGGGTTCTTCCEEECTTSCCCCCG-GGGGCTTCCEEECCSS-CCCCCG--GGGGCTTCSEEECCSSC-----CCCCGG
T ss_pred CCChhhccCCCCCEEECCCCcCCCCh-hhcCCCCCCEEEccCC-cCCcch--hhccCCCCCEEEccCCc-----cccchh
Confidence 99988999999999999999999885 5889999999999999 888883 38999999999999954 665444
Q ss_pred cchhhcCCCCccccCCCC
Q 047163 641 ASLAELKGLSKLDTGHNR 658 (658)
Q Consensus 641 ~~l~~l~~L~~L~l~~N~ 658 (658)
+..+++|+.|++++|+
T Consensus 174 --l~~l~~L~~L~L~~N~ 189 (291)
T 1h6t_A 174 --LAGLTKLQNLYLSKNH 189 (291)
T ss_dssp --GTTCTTCCEEECCSSC
T ss_pred --hcCCCccCEEECCCCc
Confidence 8999999999999985
No 49
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.55 E-value=2.1e-14 Score=135.36 Aligned_cols=143 Identities=16% Similarity=0.203 Sum_probs=94.3
Q ss_pred CceEEeccCCCCCcCCCccCCCCCceEEEecCCCCCCccchHHhcCCCCCcEEEccCCCCCC-CccccccCCCcceEEcc
Q 047163 478 GPIAISLPHRDIQELPERLQCPNLQLFLFFGKGYGPMQISDLFFEGTKELKDLSLTRIPFSS-LPSSLGSLINLGTLCLE 556 (658)
Q Consensus 478 ~~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-lp~~i~~l~~L~~L~L~ 556 (658)
+++.+.+.+|.+..+|....+++|+.|.+.+|. ...++ .+..+++|++|++++|.+.. .|..++.+++|++|+++
T Consensus 45 ~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~--~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls 120 (197)
T 4ezg_A 45 SLTYITLANINVTDLTGIEYAHNIKDLTINNIH--ATNYN--PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDIS 120 (197)
T ss_dssp TCCEEEEESSCCSCCTTGGGCTTCSEEEEESCC--CSCCG--GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECC
T ss_pred CccEEeccCCCccChHHHhcCCCCCEEEccCCC--CCcch--hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEec
Confidence 677777777777766655567777777777763 22232 25667777777777777664 45666677777777777
Q ss_pred CCCCCC--chhhhccCCCcEEEccCcc-CCccchhhcCCCCCcEEcccCcccccccChhhhcCCCCCcEEEcccC
Q 047163 557 DCPRND--IAILRQLKKLEILRLRHSY-TERLPLEIGQLTRLRLLDLSNCWRLKVIAPNVISKLSRLEELYMGNS 628 (658)
Q Consensus 557 ~~~~~~--l~~~~~l~~L~~L~l~~~~-~~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~ 628 (658)
+|.+.. +..++.+++|++|++++|. +..+| .+.++++|++|++++| .++.+++ +..+++|++|++++|
T Consensus 121 ~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n-~i~~~~~--l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 121 HSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFD-GVHDYRG--IEDFPKLNQLYAFSQ 191 (197)
T ss_dssp SSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTB-CCCCCTT--GGGCSSCCEEEECBC
T ss_pred CCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCC-CCcChHH--hccCCCCCEEEeeCc
Confidence 776665 2566667777777777775 66666 4666777777777776 5666552 566677777777663
No 50
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.55 E-value=3e-14 Score=136.73 Aligned_cols=124 Identities=19% Similarity=0.271 Sum_probs=60.9
Q ss_pred CceEEeccCCCCCcCCCc--cCCCCCceEEEecCCCCCCccchHHhcCCCCCcEEEccCCCCCCCccc-cccCCCcceEE
Q 047163 478 GPIAISLPHRDIQELPER--LQCPNLQLFLFFGKGYGPMQISDLFFEGTKELKDLSLTRIPFSSLPSS-LGSLINLGTLC 554 (658)
Q Consensus 478 ~~~~l~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~-i~~l~~L~~L~ 554 (658)
+++.|.+.+|.+..++.. ..+++|+.|++++|. ...+.+..|.++++|++|+|++|.+..+|.. +..+++|++|+
T Consensus 33 ~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~--i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~ 110 (220)
T 2v9t_B 33 TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQ--ISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLL 110 (220)
T ss_dssp TCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSC--CCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCc--CCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEE
Confidence 445555555555444431 244555555555553 2233333345555555555555555555433 34455555555
Q ss_pred ccCCCCCCc--hhhhccCCCcEEEccCccCCccch-hhcCCCCCcEEcccCc
Q 047163 555 LEDCPRNDI--AILRQLKKLEILRLRHSYTERLPL-EIGQLTRLRLLDLSNC 603 (658)
Q Consensus 555 L~~~~~~~l--~~~~~l~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~~ 603 (658)
|++|.+..+ ..+..+++|++|+|++|.+..+|. .+..+++|++|++++|
T Consensus 111 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 162 (220)
T 2v9t_B 111 LNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162 (220)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred CCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCC
Confidence 555555444 344555555555555555555543 2445555555555554
No 51
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.55 E-value=3.3e-14 Score=134.00 Aligned_cols=149 Identities=21% Similarity=0.273 Sum_probs=127.2
Q ss_pred cCCCCCceEEEecCCCCCCccchHHhcCCCCCcEEEccCCCCCCCccccccCCCcceEEccCCCCCC--chhhhccCCCc
Q 047163 496 LQCPNLQLFLFFGKGYGPMQISDLFFEGTKELKDLSLTRIPFSSLPSSLGSLINLGTLCLEDCPRND--IAILRQLKKLE 573 (658)
Q Consensus 496 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~--l~~~~~l~~L~ 573 (658)
..+++|+.|.+++|.. ..++. +..+++|++|++++|.+..++ .+..+++|++|++++|.+.. +..++.+++|+
T Consensus 41 ~~l~~L~~L~l~~n~i--~~l~~--l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 115 (197)
T 4ezg_A 41 AQMNSLTYITLANINV--TDLTG--IEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLT 115 (197)
T ss_dssp HHHHTCCEEEEESSCC--SCCTT--GGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCC
T ss_pred hhcCCccEEeccCCCc--cChHH--HhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCC
Confidence 3678999999999974 35552 788999999999999877665 78899999999999999986 48899999999
Q ss_pred EEEccCccCCc-cchhhcCCCCCcEEcccCcccccccChhhhcCCCCCcEEEcccCCCCcccccCCCccchhhcCCCCcc
Q 047163 574 ILRLRHSYTER-LPLEIGQLTRLRLLDLSNCWRLKVIAPNVISKLSRLEELYMGNSFPKWDKVEGGSNASLAELKGLSKL 652 (658)
Q Consensus 574 ~L~l~~~~~~~-lp~~~~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L 652 (658)
+|++++|.+.. .|..++++++|++|++++|..++.+++ +..+++|++|++++|. +++ .+ .+..+++|+.|
T Consensus 116 ~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~--l~~l~~L~~L~l~~n~-----i~~-~~-~l~~l~~L~~L 186 (197)
T 4ezg_A 116 LLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP--LKTLPELKSLNIQFDG-----VHD-YR-GIEDFPKLNQL 186 (197)
T ss_dssp EEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGG--GGGCSSCCEEECTTBC-----CCC-CT-TGGGCSSCCEE
T ss_pred EEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHh--hcCCCCCCEEECCCCC-----CcC-hH-HhccCCCCCEE
Confidence 99999998876 578899999999999999933887763 8999999999999964 554 33 78999999999
Q ss_pred ccCCCC
Q 047163 653 DTGHNR 658 (658)
Q Consensus 653 ~l~~N~ 658 (658)
++++|+
T Consensus 187 ~l~~N~ 192 (197)
T 4ezg_A 187 YAFSQT 192 (197)
T ss_dssp EECBC-
T ss_pred EeeCcc
Confidence 999985
No 52
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.55 E-value=5.4e-14 Score=145.27 Aligned_cols=167 Identities=16% Similarity=0.264 Sum_probs=136.8
Q ss_pred CceEEeccCCCCCcCCCccCCCCCceEEEecCCCCCCccchHHhcCCCCCcEEEccCCCCCCCccccccCCCcceEEccC
Q 047163 478 GPIAISLPHRDIQELPERLQCPNLQLFLFFGKGYGPMQISDLFFEGTKELKDLSLTRIPFSSLPSSLGSLINLGTLCLED 557 (658)
Q Consensus 478 ~~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~L~~ 557 (658)
+++.+.+.+|.+..++....+++|+.|.+.+|. ...++. +..+++|++|++++|.+..++. +..+++|++|++++
T Consensus 156 ~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~--l~~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~ 230 (347)
T 4fmz_A 156 GLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQ--IEDISP--LASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGN 230 (347)
T ss_dssp TCCEEECCSSCCCCCGGGGGCTTCSEEECTTSC--CCCCGG--GGGCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCS
T ss_pred CCcEEEecCCCcCCchhhccCCCCCEEEccCCc--cccccc--ccCCCccceeecccCCCCCCch-hhcCCcCCEEEccC
Confidence 677888888877777666678888888888875 333443 6778888888888888887765 77888999999999
Q ss_pred CCCCCchhhhccCCCcEEEccCccCCccchhhcCCCCCcEEcccCcccccccChhhhcCCCCCcEEEcccCCCCcccccC
Q 047163 558 CPRNDIAILRQLKKLEILRLRHSYTERLPLEIGQLTRLRLLDLSNCWRLKVIAPNVISKLSRLEELYMGNSFPKWDKVEG 637 (658)
Q Consensus 558 ~~~~~l~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~ 637 (658)
|.+..++.+..+++|++|++++|.+..+| .+..+++|++|++++| .++.++. +..+++|+.|++++|. +.+
T Consensus 231 n~l~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~~n-~l~~~~~--~~~l~~L~~L~L~~n~-----l~~ 301 (347)
T 4fmz_A 231 NKITDLSPLANLSQLTWLEIGTNQISDIN-AVKDLTKLKMLNVGSN-QISDISV--LNNLSQLNSLFLNNNQ-----LGN 301 (347)
T ss_dssp SCCCCCGGGTTCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSS-CCCCCGG--GGGCTTCSEEECCSSC-----CCG
T ss_pred CccCCCcchhcCCCCCEEECCCCccCCCh-hHhcCCCcCEEEccCC-ccCCChh--hcCCCCCCEEECcCCc-----CCC
Confidence 98888866888999999999999888875 4888999999999999 7887743 7889999999999854 777
Q ss_pred CCccchhhcCCCCccccCCCC
Q 047163 638 GSNASLAELKGLSKLDTGHNR 658 (658)
Q Consensus 638 ~~~~~l~~l~~L~~L~l~~N~ 658 (658)
..|..+..+++|+.|++++|+
T Consensus 302 ~~~~~l~~l~~L~~L~L~~n~ 322 (347)
T 4fmz_A 302 EDMEVIGGLTNLTTLFLSQNH 322 (347)
T ss_dssp GGHHHHHTCTTCSEEECCSSS
T ss_pred cChhHhhccccCCEEEccCCc
Confidence 778889999999999999984
No 53
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.55 E-value=2.8e-14 Score=142.32 Aligned_cols=167 Identities=21% Similarity=0.261 Sum_probs=134.8
Q ss_pred EeccCCCCCcCCCccCCCCCceEEEecCCCCCCccchHHhcCCCCCcEEEccCCCCCCCcc-ccccCCCcceEEccCCCC
Q 047163 482 ISLPHRDIQELPERLQCPNLQLFLFFGKGYGPMQISDLFFEGTKELKDLSLTRIPFSSLPS-SLGSLINLGTLCLEDCPR 560 (658)
Q Consensus 482 l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~L~~~~~ 560 (658)
+......+..+|.... ++|+.|++++|. ...++...+.++++|++|++++|.+..++. .+..+++|++|++++|.+
T Consensus 12 ~~c~~~~l~~ip~~l~-~~l~~L~ls~n~--l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 88 (276)
T 2z62_A 12 YQCMELNFYKIPDNLP-FSTKNLDLSFNP--LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88 (276)
T ss_dssp EECTTSCCSSCCSSSC-TTCCEEECTTCC--CCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred EEecCCCccccCCCCC-CCccEEECCCCc--ccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCcc
Confidence 4444556666776443 679999999996 455666568899999999999999997764 688999999999999999
Q ss_pred CCc--hhhhccCCCcEEEccCccCCccch-hhcCCCCCcEEcccCcccccccC-hhhhcCCCCCcEEEcccCCCCccccc
Q 047163 561 NDI--AILRQLKKLEILRLRHSYTERLPL-EIGQLTRLRLLDLSNCWRLKVIA-PNVISKLSRLEELYMGNSFPKWDKVE 636 (658)
Q Consensus 561 ~~l--~~~~~l~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~~~~l~~~~-~~~i~~l~~L~~L~l~~~~~~~~~~~ 636 (658)
..+ ..+..+++|++|++++|.+..++. .++++++|++|++++| .++.++ +..++++++|++|++++|. ++
T Consensus 89 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~l~~~~~~l~~L~~L~Ls~N~-----l~ 162 (276)
T 2z62_A 89 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSNK-----IQ 162 (276)
T ss_dssp CEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSS-CCCCCCCCGGGGGCTTCCEEECCSSC-----CC
T ss_pred CccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCC-ccceecCchhhccCCCCCEEECCCCC-----CC
Confidence 887 578999999999999999988865 6899999999999999 787743 4458999999999999954 56
Q ss_pred CCCccchhhcCCCC----ccccCCC
Q 047163 637 GGSNASLAELKGLS----KLDTGHN 657 (658)
Q Consensus 637 ~~~~~~l~~l~~L~----~L~l~~N 657 (658)
+..+..+..+++|+ .|++++|
T Consensus 163 ~~~~~~~~~l~~L~~l~l~L~ls~n 187 (276)
T 2z62_A 163 SIYCTDLRVLHQMPLLNLSLDLSLN 187 (276)
T ss_dssp EECGGGGHHHHTCTTCCEEEECCSS
T ss_pred cCCHHHhhhhhhccccceeeecCCC
Confidence 55566666666666 5566655
No 54
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.55 E-value=2e-14 Score=149.26 Aligned_cols=170 Identities=18% Similarity=0.200 Sum_probs=132.8
Q ss_pred eEEeccCCCCCcCCCccCCCCCceEEEecCCCCCCccchHHhc-CCCCCcEEEccCCCCCCCc-cccccCCCcceEEccC
Q 047163 480 IAISLPHRDIQELPERLQCPNLQLFLFFGKGYGPMQISDLFFE-GTKELKDLSLTRIPFSSLP-SSLGSLINLGTLCLED 557 (658)
Q Consensus 480 ~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~lp-~~i~~l~~L~~L~L~~ 557 (658)
+.+.+.++.+..+|... .+.++.|++++|. ...++...+. .+++|++|+|++|.+..+| ..+..+++|++|+|++
T Consensus 21 ~~l~c~~~~l~~iP~~~-~~~l~~L~Ls~N~--l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSL-PSYTALLDLSHNN--LSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCSSCCSSC-CTTCSEEECCSSC--CCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCccCccC-CCCCCEEECCCCC--CCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 46777778888777644 3468889998886 4556666666 8889999999999988775 4588889999999999
Q ss_pred CCCCCc--hhhhccCCCcEEEccCccCCcc-chhhcCCCCCcEEcccCcccccccChhhh---cCCCCCcEEEcccCCCC
Q 047163 558 CPRNDI--AILRQLKKLEILRLRHSYTERL-PLEIGQLTRLRLLDLSNCWRLKVIAPNVI---SKLSRLEELYMGNSFPK 631 (658)
Q Consensus 558 ~~~~~l--~~~~~l~~L~~L~l~~~~~~~l-p~~~~~l~~L~~L~l~~~~~l~~~~~~~i---~~l~~L~~L~l~~~~~~ 631 (658)
|.+..+ ..+..+++|++|+|++|.+..+ |..+.++++|++|++++| .++.+|...+ ..+++|++|++++|
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~~l~~L~~L~L~~N--- 173 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQN-QISRFPVELIKDGNKLPKLMLLDLSSN--- 173 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCSCCGGGTC----CTTCCEEECCSS---
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCC-cCCeeCHHHhcCcccCCcCCEEECCCC---
Confidence 988877 4588889999999999988887 567888999999999998 8888888755 56889999999884
Q ss_pred cccccCCCccchhhcCC--CCccccCCCC
Q 047163 632 WDKVEGGSNASLAELKG--LSKLDTGHNR 658 (658)
Q Consensus 632 ~~~~~~~~~~~l~~l~~--L~~L~l~~N~ 658 (658)
.+++..+..+..++. |+.|++.+|.
T Consensus 174 --~l~~l~~~~~~~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 174 --KLKKLPLTDLQKLPAWVKNGLYLHNNP 200 (361)
T ss_dssp --CCCCCCHHHHHHSCHHHHTTEECCSSC
T ss_pred --CCCccCHHHhhhccHhhcceEEecCCC
Confidence 366555567777776 4788888874
No 55
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.55 E-value=1.9e-14 Score=159.84 Aligned_cols=107 Identities=19% Similarity=0.175 Sum_probs=87.5
Q ss_pred CceEEeccCCCCCcCCC--ccCCCCCceEEEecCCCCCCccchHHhcCCCCCcEEEccCCCCCCCccc-cccCCCcceEE
Q 047163 478 GPIAISLPHRDIQELPE--RLQCPNLQLFLFFGKGYGPMQISDLFFEGTKELKDLSLTRIPFSSLPSS-LGSLINLGTLC 554 (658)
Q Consensus 478 ~~~~l~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~-i~~l~~L~~L~ 554 (658)
+++.|.+.+|.+..+++ ...+++|+.|++++|. ...+++..|.++++|++|++++|.+..+|.. ++.+++|++|+
T Consensus 76 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~--l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~ 153 (597)
T 3oja_B 76 QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA--IRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLS 153 (597)
T ss_dssp CCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC--CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCc--CCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEE
Confidence 78889999888877664 3378899999999886 4456666778899999999999999888776 47889999999
Q ss_pred ccCCCCCCc--hhhhccCCCcEEEccCccCCccc
Q 047163 555 LEDCPRNDI--AILRQLKKLEILRLRHSYTERLP 586 (658)
Q Consensus 555 L~~~~~~~l--~~~~~l~~L~~L~l~~~~~~~lp 586 (658)
|++|.+..+ ..++.+++|++|++++|.+..+|
T Consensus 154 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 187 (597)
T 3oja_B 154 MSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD 187 (597)
T ss_dssp CCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC
T ss_pred eeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC
Confidence 999988877 46888999999999988776654
No 56
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.54 E-value=3.6e-14 Score=145.64 Aligned_cols=169 Identities=18% Similarity=0.245 Sum_probs=121.6
Q ss_pred CceEEeccCCCCCcCCCccCCCCCceEEEecCCCCCCccchHHhcCCCCCcEEEccCCCC--------------------
Q 047163 478 GPIAISLPHRDIQELPERLQCPNLQLFLFFGKGYGPMQISDLFFEGTKELKDLSLTRIPF-------------------- 537 (658)
Q Consensus 478 ~~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-------------------- 537 (658)
+++++.+.+|.+..+|.... ++|+.|.+.+|. ...++...+..+++|++|++++|.+
T Consensus 103 ~L~~L~L~~n~l~~l~~~~~-~~L~~L~l~~n~--i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l 179 (332)
T 2ft3_A 103 KLQKLYISKNHLVEIPPNLP-SSLVELRIHDNR--IRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRI 179 (332)
T ss_dssp TCCEEECCSSCCCSCCSSCC-TTCCEEECCSSC--CCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBC
T ss_pred CCCEEECCCCcCCccCcccc-ccCCEEECCCCc--cCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEEC
Confidence 55666666665555554433 556666665554 2334444455566666666666555
Q ss_pred -----CCCccccccCCCcceEEccCCCCCCc--hhhhccCCCcEEEccCccCCccch-hhcCCCCCcEEcccCccccccc
Q 047163 538 -----SSLPSSLGSLINLGTLCLEDCPRNDI--AILRQLKKLEILRLRHSYTERLPL-EIGQLTRLRLLDLSNCWRLKVI 609 (658)
Q Consensus 538 -----~~lp~~i~~l~~L~~L~L~~~~~~~l--~~~~~l~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~~~~l~~~ 609 (658)
..+|..+. ++|++|++++|.+..+ ..+..+++|++|++++|.+..+|. .+..+++|+.|++++| .++.+
T Consensus 180 ~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~l 256 (332)
T 2ft3_A 180 SEAKLTGIPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNN-KLSRV 256 (332)
T ss_dssp CSSBCSSCCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSS-CCCBC
T ss_pred cCCCCCccCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCC-cCeec
Confidence 33333332 5788888888888776 578999999999999999988864 7899999999999999 89988
Q ss_pred ChhhhcCCCCCcEEEcccCCCCcccccCCCccchhh------cCCCCccccCCCC
Q 047163 610 APNVISKLSRLEELYMGNSFPKWDKVEGGSNASLAE------LKGLSKLDTGHNR 658 (658)
Q Consensus 610 ~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~------l~~L~~L~l~~N~ 658 (658)
|.. ++.+++|+.|++++|. +++..+..+.. ..+|+.|++.+|.
T Consensus 257 p~~-l~~l~~L~~L~l~~N~-----l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~ 305 (332)
T 2ft3_A 257 PAG-LPDLKLLQVVYLHTNN-----ITKVGVNDFCPVGFGVKRAYYNGISLFNNP 305 (332)
T ss_dssp CTT-GGGCTTCCEEECCSSC-----CCBCCTTSSSCSSCCSSSCCBSEEECCSSS
T ss_pred Chh-hhcCccCCEEECCCCC-----CCccChhHccccccccccccccceEeecCc
Confidence 887 8999999999999954 66555555544 4678999999884
No 57
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.54 E-value=3.1e-14 Score=152.97 Aligned_cols=133 Identities=26% Similarity=0.350 Sum_probs=101.3
Q ss_pred CceEEeccCCCCCcCCC-c-cCCCCCceEEEecCCCCCCccchHHhcCCCCCcEEEccCCCCCCC-ccccccCCCcceEE
Q 047163 478 GPIAISLPHRDIQELPE-R-LQCPNLQLFLFFGKGYGPMQISDLFFEGTKELKDLSLTRIPFSSL-PSSLGSLINLGTLC 554 (658)
Q Consensus 478 ~~~~l~l~~~~~~~~~~-~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~ 554 (658)
+++++.+++|.+..+++ . ..+++|+.|++++|.. ...+++..|.++++|++|++++|.+..+ |..++.+++|++|+
T Consensus 31 ~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~-~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 31 HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTP-GLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109 (455)
T ss_dssp TCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCST-TCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred ccCEEEecCCccCcCChhHhccCccccEEECcCCcc-cceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence 78899999888877633 2 3788899999988862 3345556678888899999998888865 67788888888888
Q ss_pred ccCCCCCCc--hh--hhccCCCcEEEccCccCCcc-chh-hcCCCCCcEEcccCcccccccChh
Q 047163 555 LEDCPRNDI--AI--LRQLKKLEILRLRHSYTERL-PLE-IGQLTRLRLLDLSNCWRLKVIAPN 612 (658)
Q Consensus 555 L~~~~~~~l--~~--~~~l~~L~~L~l~~~~~~~l-p~~-~~~l~~L~~L~l~~~~~l~~~~~~ 612 (658)
+++|.+... .. ++.+++|++|++++|.+..+ |.. ++++++|++|++++| .++..++.
T Consensus 110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~ 172 (455)
T 3v47_A 110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFN-KVKSICEE 172 (455)
T ss_dssp CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTC-CBSCCCTT
T ss_pred CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCC-cccccChh
Confidence 888888763 33 78888888888888887777 444 778888888888887 56655443
No 58
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.53 E-value=5.5e-14 Score=134.87 Aligned_cols=145 Identities=17% Similarity=0.181 Sum_probs=90.8
Q ss_pred ceEEEecCCCCCCccchHHhcCCCCCcEEEccCCCCCCCc--cccccCCCcceEEccCCCCCCc--hhhhccCCCcEEEc
Q 047163 502 QLFLFFGKGYGPMQISDLFFEGTKELKDLSLTRIPFSSLP--SSLGSLINLGTLCLEDCPRNDI--AILRQLKKLEILRL 577 (658)
Q Consensus 502 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp--~~i~~l~~L~~L~L~~~~~~~l--~~~~~l~~L~~L~l 577 (658)
+++++++|. ...+|..+ ...+++|++++|.+..++ ..+..+++|++|+|++|.+..+ ..+..+++|++|+|
T Consensus 14 ~~l~~s~n~--l~~iP~~~---~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~L 88 (220)
T 2v70_A 14 TTVDCSNQK--LNKIPEHI---PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILL 88 (220)
T ss_dssp TEEECCSSC--CSSCCSCC---CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CEeEeCCCC--cccCccCC---CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEEC
Confidence 356666654 33344432 234566777777766553 2356667777777777766665 35666777777777
Q ss_pred cCccCCccch-hhcCCCCCcEEcccCcccccccChhhhcCCCCCcEEEcccCCCCcccccCCCccchhhcCCCCccccCC
Q 047163 578 RHSYTERLPL-EIGQLTRLRLLDLSNCWRLKVIAPNVISKLSRLEELYMGNSFPKWDKVEGGSNASLAELKGLSKLDTGH 656 (658)
Q Consensus 578 ~~~~~~~lp~-~~~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~ 656 (658)
++|.+..+|. .+.++++|++|++++| .++.+++..+.++++|++|++++| .+++..|..+..+++|+.|++++
T Consensus 89 s~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N-----~l~~~~~~~~~~l~~L~~L~L~~ 162 (220)
T 2v70_A 89 TSNRLENVQHKMFKGLESLKTLMLRSN-RITCVGNDSFIGLSSVRLLSLYDN-----QITTVAPGAFDTLHSLSTLNLLA 162 (220)
T ss_dssp CSSCCCCCCGGGGTTCSSCCEEECTTS-CCCCBCTTSSTTCTTCSEEECTTS-----CCCCBCTTTTTTCTTCCEEECCS
T ss_pred CCCccCccCHhHhcCCcCCCEEECCCC-cCCeECHhHcCCCccCCEEECCCC-----cCCEECHHHhcCCCCCCEEEecC
Confidence 7776666653 3666677777777776 666666555666677777777663 35555566666677777777766
Q ss_pred C
Q 047163 657 N 657 (658)
Q Consensus 657 N 657 (658)
|
T Consensus 163 N 163 (220)
T 2v70_A 163 N 163 (220)
T ss_dssp C
T ss_pred c
Confidence 6
No 59
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.53 E-value=3.3e-14 Score=153.65 Aligned_cols=170 Identities=22% Similarity=0.257 Sum_probs=147.2
Q ss_pred eEEeccCCCCCcCCCccCCCCCceEEEecCCCCCCccchHHhcCCCCCcEEEccCCCCCCC-ccccccCCCcceEEccCC
Q 047163 480 IAISLPHRDIQELPERLQCPNLQLFLFFGKGYGPMQISDLFFEGTKELKDLSLTRIPFSSL-PSSLGSLINLGTLCLEDC 558 (658)
Q Consensus 480 ~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~L~~~ 558 (658)
+.+...++.+..+|... .++++.|++++|. ...++...|.++++|++|+|++|.+..+ |..+..+++|++|+|++|
T Consensus 14 ~~v~c~~~~l~~ip~~~-~~~l~~L~L~~n~--l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n 90 (477)
T 2id5_A 14 RAVLCHRKRFVAVPEGI-PTETRLLDLGKNR--IKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN 90 (477)
T ss_dssp TEEECCSCCCSSCCSCC-CTTCSEEECCSSC--CCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCcCCCCC-CCCCcEEECCCCc--cceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC
Confidence 45667777888888754 3689999999996 5556666689999999999999999976 778999999999999999
Q ss_pred CCCCc--hhhhccCCCcEEEccCccCCcc-chhhcCCCCCcEEcccCcccccccChhhhcCCCCCcEEEcccCCCCcccc
Q 047163 559 PRNDI--AILRQLKKLEILRLRHSYTERL-PLEIGQLTRLRLLDLSNCWRLKVIAPNVISKLSRLEELYMGNSFPKWDKV 635 (658)
Q Consensus 559 ~~~~l--~~~~~l~~L~~L~l~~~~~~~l-p~~~~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~~~~~~ 635 (658)
.+..+ ..+..+++|++|+|++|.+..+ |..+.++++|++|++++| .+..+++..+.++++|++|++++|. +
T Consensus 91 ~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~-----l 164 (477)
T 2id5_A 91 RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDN-DLVYISHRAFSGLNSLEQLTLEKCN-----L 164 (477)
T ss_dssp CCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCT-TCCEECTTSSTTCTTCCEEEEESCC-----C
T ss_pred cCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCC-ccceeChhhccCCCCCCEEECCCCc-----C
Confidence 99888 4578999999999999988877 567899999999999999 8888888779999999999999954 6
Q ss_pred cCCCccchhhcCCCCccccCCCC
Q 047163 636 EGGSNASLAELKGLSKLDTGHNR 658 (658)
Q Consensus 636 ~~~~~~~l~~l~~L~~L~l~~N~ 658 (658)
++..+..+..+++|+.|++++|+
T Consensus 165 ~~~~~~~l~~l~~L~~L~l~~n~ 187 (477)
T 2id5_A 165 TSIPTEALSHLHGLIVLRLRHLN 187 (477)
T ss_dssp SSCCHHHHTTCTTCCEEEEESCC
T ss_pred cccChhHhcccCCCcEEeCCCCc
Confidence 66667789999999999999874
No 60
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.53 E-value=8.5e-14 Score=159.32 Aligned_cols=173 Identities=22% Similarity=0.293 Sum_probs=125.0
Q ss_pred CceEEeccCCCCC-cCCCcc-CCCCCceEEEecCCCCCCccchHHhcCCCCCcEEEccCCCCC-CCccccccCCCcceEE
Q 047163 478 GPIAISLPHRDIQ-ELPERL-QCPNLQLFLFFGKGYGPMQISDLFFEGTKELKDLSLTRIPFS-SLPSSLGSLINLGTLC 554 (658)
Q Consensus 478 ~~~~l~l~~~~~~-~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~lp~~i~~l~~L~~L~ 554 (658)
+++.+.+.+|.+. .+|... .+++|+.|.+.+|... ..+|. .+..+++|++|++++|.+. .+|..++.+++|++|+
T Consensus 443 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~-~~~p~-~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ 520 (768)
T 3rgz_A 443 KLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLT-GEIPS-GLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILK 520 (768)
T ss_dssp TCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCC-SCCCG-GGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEE
T ss_pred CCCEEECCCCcccCcCCHHHcCCCCceEEEecCCccc-CcCCH-HHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEE
Confidence 5666666666665 344433 5677777777777522 22333 3567778888888888877 6677788888888888
Q ss_pred ccCCCCCCc--hhhhccCCCcEEEccCccCC-ccchh-------------------------------------------
Q 047163 555 LEDCPRNDI--AILRQLKKLEILRLRHSYTE-RLPLE------------------------------------------- 588 (658)
Q Consensus 555 L~~~~~~~l--~~~~~l~~L~~L~l~~~~~~-~lp~~------------------------------------------- 588 (658)
|++|.+... ..++.+++|++|++++|.+. .+|..
T Consensus 521 L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 600 (768)
T 3rgz_A 521 LSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIR 600 (768)
T ss_dssp CCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCC
T ss_pred CCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccccccccccccccccccc
Confidence 888877643 67778888888888877543 44433
Q ss_pred ---------------------------hcCCCCCcEEcccCcccccccChhhhcCCCCCcEEEcccCCCCcccccCCCcc
Q 047163 589 ---------------------------IGQLTRLRLLDLSNCWRLKVIAPNVISKLSRLEELYMGNSFPKWDKVEGGSNA 641 (658)
Q Consensus 589 ---------------------------~~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~ 641 (658)
++++++|+.|++++| .+++..|..++++++|+.|++++ |.++|.+|.
T Consensus 601 ~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N-~l~g~ip~~l~~l~~L~~L~Ls~-----N~l~g~ip~ 674 (768)
T 3rgz_A 601 SEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYN-MLSGYIPKEIGSMPYLFILNLGH-----NDISGSIPD 674 (768)
T ss_dssp GGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSS-CCBSCCCGGGGGCTTCCEEECCS-----SCCCSCCCG
T ss_pred chhhhccccccccccccceecccCchhhhccccccEEECcCC-cccccCCHHHhccccCCEEeCcC-----CccCCCCCh
Confidence 233567788888888 67765556688999999999988 448899999
Q ss_pred chhhcCCCCccccCCCC
Q 047163 642 SLAELKGLSKLDTGHNR 658 (658)
Q Consensus 642 ~l~~l~~L~~L~l~~N~ 658 (658)
.++++++|+.|++++|+
T Consensus 675 ~l~~L~~L~~LdLs~N~ 691 (768)
T 3rgz_A 675 EVGDLRGLNILDLSSNK 691 (768)
T ss_dssp GGGGCTTCCEEECCSSC
T ss_pred HHhCCCCCCEEECCCCc
Confidence 99999999999999885
No 61
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.52 E-value=1.8e-14 Score=146.50 Aligned_cols=168 Identities=19% Similarity=0.171 Sum_probs=97.4
Q ss_pred CceEEeccCCCCCcCCCcc-CC-----CCCceEEEecCCCCCCccchHHhcCCCCCcEEEccCCCCCC---Ccccc--cc
Q 047163 478 GPIAISLPHRDIQELPERL-QC-----PNLQLFLFFGKGYGPMQISDLFFEGTKELKDLSLTRIPFSS---LPSSL--GS 546 (658)
Q Consensus 478 ~~~~l~l~~~~~~~~~~~~-~~-----~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~---lp~~i--~~ 546 (658)
+++++.+++|.+...|... .+ ++|+.|.+++|. ...++...+..+++|++|++++|.+.. +|..+ ..
T Consensus 122 ~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~--l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~ 199 (312)
T 1wwl_A 122 DLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAH--SLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLK 199 (312)
T ss_dssp CCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCS--CCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTS
T ss_pred CccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCC--CccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhcc
Confidence 5566666666655554322 22 566666666664 233443445566666666666666542 23333 55
Q ss_pred CCCcceEEccCCCCCCc-----hhhhccCCCcEEEccCccCCccc--hhhcCCCCCcEEcccCcccccccChhhhcCCCC
Q 047163 547 LINLGTLCLEDCPRNDI-----AILRQLKKLEILRLRHSYTERLP--LEIGQLTRLRLLDLSNCWRLKVIAPNVISKLSR 619 (658)
Q Consensus 547 l~~L~~L~L~~~~~~~l-----~~~~~l~~L~~L~l~~~~~~~lp--~~~~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~ 619 (658)
+++|++|++++|.+..+ ..+..+++|++|++++|.+...+ ..+..+++|++|++++| .++.+|.. +. ++
T Consensus 200 l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N-~l~~ip~~-~~--~~ 275 (312)
T 1wwl_A 200 FPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFT-GLKQVPKG-LP--AK 275 (312)
T ss_dssp CTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTS-CCSSCCSS-CC--SE
T ss_pred CCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCC-ccChhhhh-cc--CC
Confidence 66666666666666543 12234566666666666665543 33445666666666666 56666554 33 66
Q ss_pred CcEEEcccCCCCcccccCCCccchhhcCCCCccccCCCC
Q 047163 620 LEELYMGNSFPKWDKVEGGSNASLAELKGLSKLDTGHNR 658 (658)
Q Consensus 620 L~~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~N~ 658 (658)
|++|++++| .+++. |. +..+++|+.|++++|+
T Consensus 276 L~~L~Ls~N-----~l~~~-p~-~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 276 LSVLDLSYN-----RLDRN-PS-PDELPQVGNLSLKGNP 307 (312)
T ss_dssp EEEEECCSS-----CCCSC-CC-TTTSCEEEEEECTTCT
T ss_pred ceEEECCCC-----CCCCC-hh-HhhCCCCCEEeccCCC
Confidence 667777663 35544 54 7778888888888774
No 62
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.52 E-value=6.4e-14 Score=156.64 Aligned_cols=176 Identities=16% Similarity=0.165 Sum_probs=114.5
Q ss_pred ceEEeccCCCCCcCCCccC---CCCCceEEEecCCCCCCccchHHhc-------CCCCCcEEEccCCCCCCCccccc-cC
Q 047163 479 PIAISLPHRDIQELPERLQ---CPNLQLFLFFGKGYGPMQISDLFFE-------GTKELKDLSLTRIPFSSLPSSLG-SL 547 (658)
Q Consensus 479 ~~~l~l~~~~~~~~~~~~~---~~~L~~L~l~~~~~~~~~~~~~~~~-------~~~~L~~L~l~~~~~~~lp~~i~-~l 547 (658)
++.+.+.+|.+..+|.... +++|+.|++++|.... .+|.. +. .+.+|++|++++|.+..+|..+. .+
T Consensus 379 L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~-~~p~~-l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l 456 (636)
T 4eco_A 379 VENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGS-VDGKN-FDPLDPTPFKGINVSSINLSNNQISKFPKELFSTG 456 (636)
T ss_dssp CCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTT-TTTCS-SCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTT
T ss_pred CcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCC-cchhh-hcccccccccCCCCCEEECcCCccCcCCHHHHccC
Confidence 7777777777777766542 3367777777775322 12221 23 45577777777777777776544 36
Q ss_pred CCcceEEccCCCCCCc-hhh-h-------ccCCCcEEEccCccCCccchhhc--CCCCCcEEcccCcccccccChhhhcC
Q 047163 548 INLGTLCLEDCPRNDI-AIL-R-------QLKKLEILRLRHSYTERLPLEIG--QLTRLRLLDLSNCWRLKVIAPNVISK 616 (658)
Q Consensus 548 ~~L~~L~L~~~~~~~l-~~~-~-------~l~~L~~L~l~~~~~~~lp~~~~--~l~~L~~L~l~~~~~l~~~~~~~i~~ 616 (658)
++|++|+|++|.+..+ ..+ . ++++|++|++++|.+..+|..+. .+++|++|++++| .++.+|.. +++
T Consensus 457 ~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N-~l~~ip~~-~~~ 534 (636)
T 4eco_A 457 SPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYN-SFSKFPTQ-PLN 534 (636)
T ss_dssp CCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSS-CCSSCCCG-GGG
T ss_pred CCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCC-CCCCcChh-hhc
Confidence 7777777777776655 222 2 22377777777777777777776 7777777777777 67766555 667
Q ss_pred CCCCcEEEcccCCC-CcccccCCCccchhhcCCCCccccCCCC
Q 047163 617 LSRLEELYMGNSFP-KWDKVEGGSNASLAELKGLSKLDTGHNR 658 (658)
Q Consensus 617 l~~L~~L~l~~~~~-~~~~~~~~~~~~l~~l~~L~~L~l~~N~ 658 (658)
+++|++|++++|.. ..|.+.+.+|..+.++++|+.|++++|+
T Consensus 535 l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 577 (636)
T 4eco_A 535 SSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSND 577 (636)
T ss_dssp CSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSC
T ss_pred CCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCc
Confidence 77777777754320 1244666777777777777777777774
No 63
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.52 E-value=6.6e-14 Score=135.27 Aligned_cols=146 Identities=20% Similarity=0.239 Sum_probs=124.9
Q ss_pred CceEEEecCCCCCCccchHHhcCCCCCcEEEccCCCCCCC-ccccccCCCcceEEccCCCCCCc--hhhhccCCCcEEEc
Q 047163 501 LQLFLFFGKGYGPMQISDLFFEGTKELKDLSLTRIPFSSL-PSSLGSLINLGTLCLEDCPRNDI--AILRQLKKLEILRL 577 (658)
Q Consensus 501 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~L~~~~~~~l--~~~~~l~~L~~L~l 577 (658)
.+.+++.++. ...+|..+ .++|++|++++|.+..+ |..+..+++|++|+|++|.+..+ ..+..+++|++|+|
T Consensus 21 ~~~v~c~~~~--l~~ip~~~---~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~L 95 (229)
T 3e6j_A 21 GTTVDCRSKR--HASVPAGI---PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDL 95 (229)
T ss_dssp TTEEECTTSC--CSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCEeEccCCC--cCccCCCC---CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEEC
Confidence 4567776664 45566543 38899999999999977 67788999999999999999888 45789999999999
Q ss_pred cCccCCccchh-hcCCCCCcEEcccCcccccccChhhhcCCCCCcEEEcccCCCCcccccCCCccchhhcCCCCccccCC
Q 047163 578 RHSYTERLPLE-IGQLTRLRLLDLSNCWRLKVIAPNVISKLSRLEELYMGNSFPKWDKVEGGSNASLAELKGLSKLDTGH 656 (658)
Q Consensus 578 ~~~~~~~lp~~-~~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~ 656 (658)
++|.+..+|.. +..+++|++|++++| .++.+|.. +..+++|++|++++| .+++..+..+..+++|+.|++++
T Consensus 96 s~N~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~lp~~-~~~l~~L~~L~L~~N-----~l~~~~~~~~~~l~~L~~L~l~~ 168 (229)
T 3e6j_A 96 GTNQLTVLPSAVFDRLVHLKELFMCCN-KLTELPRG-IERLTHLTHLALDQN-----QLKSIPHGAFDRLSSLTHAYLFG 168 (229)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSS-CCCSCCTT-GGGCTTCSEEECCSS-----CCCCCCTTTTTTCTTCCEEECTT
T ss_pred CCCcCCccChhHhCcchhhCeEeccCC-cccccCcc-cccCCCCCEEECCCC-----cCCccCHHHHhCCCCCCEEEeeC
Confidence 99999999765 689999999999999 89989877 799999999999995 47766667899999999999999
Q ss_pred CC
Q 047163 657 NR 658 (658)
Q Consensus 657 N~ 658 (658)
|.
T Consensus 169 N~ 170 (229)
T 3e6j_A 169 NP 170 (229)
T ss_dssp SC
T ss_pred CC
Confidence 84
No 64
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.52 E-value=1.7e-14 Score=160.93 Aligned_cols=171 Identities=23% Similarity=0.253 Sum_probs=132.4
Q ss_pred CceEEeccCCCCCcCCC--ccCCCCCceEEEecCCCCCCccchHHhcCCCCCcEEEccCCCCCCC-ccccccCCCcceEE
Q 047163 478 GPIAISLPHRDIQELPE--RLQCPNLQLFLFFGKGYGPMQISDLFFEGTKELKDLSLTRIPFSSL-PSSLGSLINLGTLC 554 (658)
Q Consensus 478 ~~~~l~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~ 554 (658)
+++++.+++|.+..++. ...+++|+.|++++|. ...+++..|.++++|++|++++|.+..+ |..++.+++|++|+
T Consensus 33 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~--l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 110 (606)
T 3vq2_A 33 STKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCE--IETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLV 110 (606)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCC--CCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEE
T ss_pred CcCEEECCCCCcCEeChhhccCCccCcEEeCCCCc--ccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEE
Confidence 78899999988887765 3388899999999885 4456566678889999999999998876 77888899999999
Q ss_pred ccCCCCCCc--hhhhccCCCcEEEccCccCC--ccchhhcCCCCCcEEcccCcccccccChhhhcCCCCCc----EEEcc
Q 047163 555 LEDCPRNDI--AILRQLKKLEILRLRHSYTE--RLPLEIGQLTRLRLLDLSNCWRLKVIAPNVISKLSRLE----ELYMG 626 (658)
Q Consensus 555 L~~~~~~~l--~~~~~l~~L~~L~l~~~~~~--~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~----~L~l~ 626 (658)
+++|.+..+ ..++++++|++|++++|.+. .+|..++++++|++|++++| .++.+++..++.+++|+ +|+++
T Consensus 111 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~~l~~L~l~ 189 (606)
T 3vq2_A 111 AVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN-YIQTITVNDLQFLRENPQVNLSLDMS 189 (606)
T ss_dssp CTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSS-CCCEECTTTTHHHHHCTTCCCEEECT
T ss_pred ccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCC-cceecChhhhhhhhccccccceeecc
Confidence 999988776 47888999999999998876 46888999999999999998 78887776566655554 78888
Q ss_pred cCCCCcccccCCCccchhhcCCCCccccCCC
Q 047163 627 NSFPKWDKVEGGSNASLAELKGLSKLDTGHN 657 (658)
Q Consensus 627 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~N 657 (658)
+|. +.+..+..+.. .+|+.|++++|
T Consensus 190 ~n~-----l~~~~~~~~~~-~~L~~L~L~~n 214 (606)
T 3vq2_A 190 LNP-----IDFIQDQAFQG-IKLHELTLRGN 214 (606)
T ss_dssp TCC-----CCEECTTTTTT-CEEEEEEEESC
T ss_pred CCC-----cceeCcccccC-ceeeeeeccCC
Confidence 743 44333333333 36777777766
No 65
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.52 E-value=1.4e-13 Score=148.18 Aligned_cols=164 Identities=23% Similarity=0.337 Sum_probs=87.5
Q ss_pred CceEEeccCCCCCcCCCccCCCCCceEEEecCCCCCCccchHHhcCCCCCcEEEccCCCCCCCccccccCCCcceEEccC
Q 047163 478 GPIAISLPHRDIQELPERLQCPNLQLFLFFGKGYGPMQISDLFFEGTKELKDLSLTRIPFSSLPSSLGSLINLGTLCLED 557 (658)
Q Consensus 478 ~~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~L~~ 557 (658)
+++.+.+++|.+..+++...+++|+.|.+.+|. ...+++ +..+++|++|++++|.+..+|. +..+++|++|++++
T Consensus 69 ~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~--l~~~~~--~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~ 143 (466)
T 1o6v_A 69 NLTQINFSNNQLTDITPLKNLTKLVDILMNNNQ--IADITP--LANLTNLTGLTLFNNQITDIDP-LKNLTNLNRLELSS 143 (466)
T ss_dssp TCCEEECCSSCCCCCGGGTTCTTCCEEECCSSC--CCCCGG--GTTCTTCCEEECCSSCCCCCGG-GTTCTTCSEEEEEE
T ss_pred CCCEEECCCCccCCchhhhccccCCEEECCCCc--cccChh--hcCCCCCCEEECCCCCCCCChH-HcCCCCCCEEECCC
Confidence 566666666666666554466666666666664 222333 5666666777776666666654 66666677776666
Q ss_pred CCCCCchhhhc---------------------cCCCcEEEccCccCCccchhhcCCCCCcEEcccCcccccccChhhhcC
Q 047163 558 CPRNDIAILRQ---------------------LKKLEILRLRHSYTERLPLEIGQLTRLRLLDLSNCWRLKVIAPNVISK 616 (658)
Q Consensus 558 ~~~~~l~~~~~---------------------l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~i~~ 616 (658)
|.+..++.++. +++|++|++++|.+..++. +.++++|++|++++| .+...++ ++.
T Consensus 144 n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~--~~~ 219 (466)
T 1o6v_A 144 NTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISV-LAKLTNLESLIATNN-QISDITP--LGI 219 (466)
T ss_dssp EEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECCSS-CCCCCGG--GGG
T ss_pred CccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCChh-hccCCCCCEEEecCC-ccccccc--ccc
Confidence 65554433333 3334444444444433332 444444444444444 3444333 344
Q ss_pred CCCCcEEEcccCCCCcccccCCCccchhhcCCCCccccCCC
Q 047163 617 LSRLEELYMGNSFPKWDKVEGGSNASLAELKGLSKLDTGHN 657 (658)
Q Consensus 617 l~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~N 657 (658)
+++|++|++++|. +.+ . ..+..+++|+.|++++|
T Consensus 220 l~~L~~L~l~~n~-----l~~-~-~~l~~l~~L~~L~l~~n 253 (466)
T 1o6v_A 220 LTNLDELSLNGNQ-----LKD-I-GTLASLTNLTDLDLANN 253 (466)
T ss_dssp CTTCCEEECCSSC-----CCC-C-GGGGGCTTCSEEECCSS
T ss_pred cCCCCEEECCCCC-----ccc-c-hhhhcCCCCCEEECCCC
Confidence 4555555554432 221 1 24556666666666665
No 66
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.51 E-value=3.9e-14 Score=156.07 Aligned_cols=164 Identities=23% Similarity=0.305 Sum_probs=139.9
Q ss_pred ceEEeccCCCCCcCCCccCCCCCceEEEecCCCCCCccchHHhcCCCCCcEEEccCCCCCCCccccccCCCcceEEccCC
Q 047163 479 PIAISLPHRDIQELPERLQCPNLQLFLFFGKGYGPMQISDLFFEGTKELKDLSLTRIPFSSLPSSLGSLINLGTLCLEDC 558 (658)
Q Consensus 479 ~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~ 558 (658)
+.++.+..+.+..+.....+++|+.|.+.+|. ...++. +..+++|+.|+|++|.+..+|+ +..+++|++|+|++|
T Consensus 23 l~~l~l~~~~i~~~~~~~~L~~L~~L~l~~n~--i~~l~~--l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N 97 (605)
T 1m9s_A 23 TIKDNLKKKSVTDAVTQNELNSIDQIIANNSD--IKSVQG--IQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDEN 97 (605)
T ss_dssp HHHHHTTCSCTTSEECHHHHTTCCCCBCTTCC--CCCCTT--GGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSS
T ss_pred HHHHhccCCCcccccchhcCCCCCEEECcCCC--CCCChH--HccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCC
Confidence 33444555666665555678899999999986 344543 6889999999999999999887 899999999999999
Q ss_pred CCCCchhhhccCCCcEEEccCccCCccchhhcCCCCCcEEcccCcccccccChhhhcCCCCCcEEEcccCCCCcccccCC
Q 047163 559 PRNDIAILRQLKKLEILRLRHSYTERLPLEIGQLTRLRLLDLSNCWRLKVIAPNVISKLSRLEELYMGNSFPKWDKVEGG 638 (658)
Q Consensus 559 ~~~~l~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~ 638 (658)
.+..++.+..+++|++|+|++|.+..+|. +..+++|+.|+|++| .++.++ .++.+++|+.|++++|. +.+.
T Consensus 98 ~l~~l~~l~~l~~L~~L~Ls~N~l~~l~~-l~~l~~L~~L~Ls~N-~l~~l~--~l~~l~~L~~L~Ls~N~-----l~~~ 168 (605)
T 1m9s_A 98 KIKDLSSLKDLKKLKSLSLEHNGISDING-LVHLPQLESLYLGNN-KITDIT--VLSRLTKLDTLSLEDNQ-----ISDI 168 (605)
T ss_dssp CCCCCTTSTTCTTCCEEECTTSCCCCCGG-GGGCTTCSEEECCSS-CCCCCG--GGGSCTTCSEEECCSSC-----CCCC
T ss_pred CCCCChhhccCCCCCEEEecCCCCCCCcc-ccCCCccCEEECCCC-ccCCch--hhcccCCCCEEECcCCc-----CCCc
Confidence 99999999999999999999999998764 899999999999999 888883 38999999999999954 6665
Q ss_pred CccchhhcCCCCccccCCCC
Q 047163 639 SNASLAELKGLSKLDTGHNR 658 (658)
Q Consensus 639 ~~~~l~~l~~L~~L~l~~N~ 658 (658)
.| +..|++|+.|++++|+
T Consensus 169 ~~--l~~l~~L~~L~Ls~N~ 186 (605)
T 1m9s_A 169 VP--LAGLTKLQNLYLSKNH 186 (605)
T ss_dssp GG--GTTCTTCCEEECCSSC
T ss_pred hh--hccCCCCCEEECcCCC
Confidence 55 8999999999999985
No 67
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.51 E-value=1.5e-13 Score=148.03 Aligned_cols=164 Identities=20% Similarity=0.289 Sum_probs=127.0
Q ss_pred CceEEeccCCCCCcCCCccCCCCCceEEEecCCCCCCccchHHhcCCCCCcEEEccCCCCCCCccccccCCCcceEEccC
Q 047163 478 GPIAISLPHRDIQELPERLQCPNLQLFLFFGKGYGPMQISDLFFEGTKELKDLSLTRIPFSSLPSSLGSLINLGTLCLED 557 (658)
Q Consensus 478 ~~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~L~~ 557 (658)
+++.+.+.+|.+..++....+++|+.|++++|.. ..++. +..+++|+.|++++|.+..+|. +..+++|++|++++
T Consensus 222 ~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l--~~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~ 296 (466)
T 1o6v_A 222 NLDELSLNGNQLKDIGTLASLTNLTDLDLANNQI--SNLAP--LSGLTKLTELKLGANQISNISP-LAGLTALTNLELNE 296 (466)
T ss_dssp TCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCC--CCCGG--GTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCS
T ss_pred CCCEEECCCCCcccchhhhcCCCCCEEECCCCcc--ccchh--hhcCCCCCEEECCCCccCcccc-ccCCCccCeEEcCC
Confidence 6778888888777776666778888888888763 23333 6778888888888888887765 77788888888888
Q ss_pred CCCCCchhhhccCCCcEEEccCccCCccchhhcCCCCCcEEcccCcccccccChhhhcCCCCCcEEEcccCCCCcccccC
Q 047163 558 CPRNDIAILRQLKKLEILRLRHSYTERLPLEIGQLTRLRLLDLSNCWRLKVIAPNVISKLSRLEELYMGNSFPKWDKVEG 637 (658)
Q Consensus 558 ~~~~~l~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~ 637 (658)
|.+..++.++.+++|+.|++++|.+..++. ++.+++|+.|++++| .++.++. +.++++|+.|++++|. +++
T Consensus 297 n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n-~l~~~~~--l~~l~~L~~L~l~~n~-----l~~ 367 (466)
T 1o6v_A 297 NQLEDISPISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFYNN-KVSDVSS--LANLTNINWLSAGHNQ-----ISD 367 (466)
T ss_dssp SCCSCCGGGGGCTTCSEEECCSSCCSCCGG-GGGCTTCCEEECCSS-CCCCCGG--GTTCTTCCEEECCSSC-----CCB
T ss_pred CcccCchhhcCCCCCCEEECcCCcCCCchh-hccCccCCEeECCCC-ccCCchh--hccCCCCCEEeCCCCc-----cCc
Confidence 888877668888888888888888777765 778888888888888 7777642 7788888888888753 666
Q ss_pred CCccchhhcCCCCccccCCC
Q 047163 638 GSNASLAELKGLSKLDTGHN 657 (658)
Q Consensus 638 ~~~~~l~~l~~L~~L~l~~N 657 (658)
..| +..+++|+.|++++|
T Consensus 368 ~~~--~~~l~~L~~L~l~~n 385 (466)
T 1o6v_A 368 LTP--LANLTRITQLGLNDQ 385 (466)
T ss_dssp CGG--GTTCTTCCEEECCCE
T ss_pred cch--hhcCCCCCEEeccCC
Confidence 555 788888888888876
No 68
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.51 E-value=4.7e-14 Score=157.38 Aligned_cols=170 Identities=19% Similarity=0.244 Sum_probs=145.4
Q ss_pred ceEEeccCCCCCcCCCccCCCCCceEEEecCCCCCCccchHHhcCCCCCcEEEccCCCCCCC-ccccccCCCcceEEccC
Q 047163 479 PIAISLPHRDIQELPERLQCPNLQLFLFFGKGYGPMQISDLFFEGTKELKDLSLTRIPFSSL-PSSLGSLINLGTLCLED 557 (658)
Q Consensus 479 ~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~L~~ 557 (658)
-..+..+++.++.+|.... ++++.|++++|. ...+++..|.++++|++|++++|.+..+ |..+..+++|++|+|++
T Consensus 13 ~~~~~c~~~~l~~ip~~~~-~~l~~L~Ls~n~--l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~ 89 (606)
T 3vq2_A 13 NITYQCMDQKLSKVPDDIP-SSTKNIDLSFNP--LKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTG 89 (606)
T ss_dssp TTEEECTTSCCSSCCTTSC-TTCCEEECTTSC--CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred CCceEccCCCcccCCCCCC-CCcCEEECCCCC--cCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCC
Confidence 3467788888888887654 899999999996 4556666689999999999999999977 56789999999999999
Q ss_pred CCCCCc--hhhhccCCCcEEEccCccCCccc-hhhcCCCCCcEEcccCcccccc--cChhhhcCCCCCcEEEcccCCCCc
Q 047163 558 CPRNDI--AILRQLKKLEILRLRHSYTERLP-LEIGQLTRLRLLDLSNCWRLKV--IAPNVISKLSRLEELYMGNSFPKW 632 (658)
Q Consensus 558 ~~~~~l--~~~~~l~~L~~L~l~~~~~~~lp-~~~~~l~~L~~L~l~~~~~l~~--~~~~~i~~l~~L~~L~l~~~~~~~ 632 (658)
|.+..+ ..++++++|++|++++|.+..+| ..++++++|++|++++| .+.. +|. .++++++|++|++++|.
T Consensus 90 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~lp~-~~~~l~~L~~L~Ls~n~--- 164 (606)
T 3vq2_A 90 NPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHN-FIHSCKLPA-YFSNLTNLVHVDLSYNY--- 164 (606)
T ss_dssp CCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSS-CCCCCCCCG-GGGTCTTCCEEECCSSC---
T ss_pred CcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCC-cccceechH-hHhhcCCCCEEEccCCc---
Confidence 999887 67999999999999999998887 67999999999999999 7775 444 49999999999999954
Q ss_pred ccccCCCccchhhcCCCC----ccccCCCC
Q 047163 633 DKVEGGSNASLAELKGLS----KLDTGHNR 658 (658)
Q Consensus 633 ~~~~~~~~~~l~~l~~L~----~L~l~~N~ 658 (658)
+++..|..+..+++|+ .|++++|+
T Consensus 165 --l~~~~~~~~~~l~~L~~~l~~L~l~~n~ 192 (606)
T 3vq2_A 165 --IQTITVNDLQFLRENPQVNLSLDMSLNP 192 (606)
T ss_dssp --CCEECTTTTHHHHHCTTCCCEEECTTCC
T ss_pred --ceecChhhhhhhhccccccceeeccCCC
Confidence 7777777788887776 69988874
No 69
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.51 E-value=6.4e-14 Score=150.47 Aligned_cols=87 Identities=24% Similarity=0.304 Sum_probs=59.2
Q ss_pred hhccCCCcEEEccCccCCcc-chhhcCCCCCcEEcccCcccccccChhhhcCCCCCcEEEcccCCCCcccccCCCccchh
Q 047163 566 LRQLKKLEILRLRHSYTERL-PLEIGQLTRLRLLDLSNCWRLKVIAPNVISKLSRLEELYMGNSFPKWDKVEGGSNASLA 644 (658)
Q Consensus 566 ~~~l~~L~~L~l~~~~~~~l-p~~~~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~ 644 (658)
++.+++|++|++++|.+..+ |..++++++|++|++++| .++.+++..++++++|++|++++| .+++..|..+.
T Consensus 295 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N-----~l~~~~~~~~~ 368 (455)
T 3v47_A 295 FSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQN-FLGSIDSRMFENLDKLEVLDLSYN-----HIRALGDQSFL 368 (455)
T ss_dssp TTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCEECGGGGTTCTTCCEEECCSS-----CCCEECTTTTT
T ss_pred cccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCC-ccCCcChhHhcCcccCCEEECCCC-----cccccChhhcc
Confidence 45566667777766666665 345666777777777777 666666665677777777777764 35656677777
Q ss_pred hcCCCCccccCCCC
Q 047163 645 ELKGLSKLDTGHNR 658 (658)
Q Consensus 645 ~l~~L~~L~l~~N~ 658 (658)
.+++|+.|++++|+
T Consensus 369 ~l~~L~~L~L~~N~ 382 (455)
T 3v47_A 369 GLPNLKELALDTNQ 382 (455)
T ss_dssp TCTTCCEEECCSSC
T ss_pred ccccccEEECCCCc
Confidence 77778877777774
No 70
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.50 E-value=3.6e-14 Score=161.94 Aligned_cols=169 Identities=17% Similarity=0.194 Sum_probs=123.8
Q ss_pred CceEEeccCCCCCc------------------CCCcc---CCCCCceEEEecCCCCCCccchHHhcCCCCCcEEEccCCC
Q 047163 478 GPIAISLPHRDIQE------------------LPERL---QCPNLQLFLFFGKGYGPMQISDLFFEGTKELKDLSLTRIP 536 (658)
Q Consensus 478 ~~~~l~l~~~~~~~------------------~~~~~---~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 536 (658)
+++.|.+++|.+.. +|..+ .+++|+.|.+++|.. ...+|. .+.++++|++|++++|.
T Consensus 449 ~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l-~~~iP~-~l~~L~~L~~L~Ls~N~ 526 (876)
T 4ecn_A 449 KLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPN-MTQLPD-FLYDLPELQSLNIACNR 526 (876)
T ss_dssp TCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTT-CCSCCG-GGGGCSSCCEEECTTCT
T ss_pred CCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCC-CccChH-HHhCCCCCCEEECcCCC
Confidence 78889999888877 77765 588899999988863 334554 36788888888888887
Q ss_pred -CCC--CccccccCC-------CcceEEccCCCCCCc-h--hhhccCCCcEEEccCccCCccchhhcCCCCCcEEcccCc
Q 047163 537 -FSS--LPSSLGSLI-------NLGTLCLEDCPRNDI-A--ILRQLKKLEILRLRHSYTERLPLEIGQLTRLRLLDLSNC 603 (658)
Q Consensus 537 -~~~--lp~~i~~l~-------~L~~L~L~~~~~~~l-~--~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~ 603 (658)
+.. +|..++.++ +|++|+|++|.+..+ . .++++++|++|++++|.+..+| .++++++|+.|++++|
T Consensus 527 ~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N 605 (876)
T 4ecn_A 527 GISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYN 605 (876)
T ss_dssp TSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEECCSS
T ss_pred CcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCcceEEECcCC
Confidence 763 777666665 888888888887766 3 5888888888888888777888 7788888888888888
Q ss_pred ccccccChhhhcCCCC-CcEEEcccCCCCcccccCCCccchhhcCC--CCccccCCC
Q 047163 604 WRLKVIAPNVISKLSR-LEELYMGNSFPKWDKVEGGSNASLAELKG--LSKLDTGHN 657 (658)
Q Consensus 604 ~~l~~~~~~~i~~l~~-L~~L~l~~~~~~~~~~~~~~~~~l~~l~~--L~~L~l~~N 657 (658)
.+..+|.. ++++++ |+.|++++|. ++ .+|..+..++. |+.|++++|
T Consensus 606 -~l~~lp~~-l~~l~~~L~~L~Ls~N~-----L~-~lp~~~~~~~~~~L~~L~Ls~N 654 (876)
T 4ecn_A 606 -QIEEIPED-FCAFTDQVEGLGFSHNK-----LK-YIPNIFNAKSVYVMGSVDFSYN 654 (876)
T ss_dssp -CCSCCCTT-SCEECTTCCEEECCSSC-----CC-SCCSCCCTTCSSCEEEEECCSS
T ss_pred -ccccchHH-HhhccccCCEEECcCCC-----CC-cCchhhhccccCCCCEEECcCC
Confidence 67767665 777777 8888888754 33 44544444432 555555544
No 71
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.50 E-value=4.9e-14 Score=129.15 Aligned_cols=129 Identities=22% Similarity=0.197 Sum_probs=92.2
Q ss_pred CCCCceEEEecCCCCCCccchHHhcCCCCCcEEEccCCCCCCCccccccCCCcceEEccCCCCCC-c-hhhhccCCCcEE
Q 047163 498 CPNLQLFLFFGKGYGPMQISDLFFEGTKELKDLSLTRIPFSSLPSSLGSLINLGTLCLEDCPRND-I-AILRQLKKLEIL 575 (658)
Q Consensus 498 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~-l-~~~~~l~~L~~L 575 (658)
.++|+.|.+.+|......+|.. +..+++|++|++++|.+..+ ..++.+++|++|++++|.+.. + ..+..+++|++|
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~-~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGL-TAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSC-CGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred cccCCEEECCCCCCChhhHHHH-HHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 3677788887776332245543 56677788888888877766 667777788888888887776 4 444557788888
Q ss_pred EccCccCCccc--hhhcCCCCCcEEcccCcccccccCh---hhhcCCCCCcEEEcccCC
Q 047163 576 RLRHSYTERLP--LEIGQLTRLRLLDLSNCWRLKVIAP---NVISKLSRLEELYMGNSF 629 (658)
Q Consensus 576 ~l~~~~~~~lp--~~~~~l~~L~~L~l~~~~~l~~~~~---~~i~~l~~L~~L~l~~~~ 629 (658)
++++|.+..+| ..+..+++|++|++++| .++.+++ ..+..+++|++|++++|.
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNC-EVTNLNDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSS-GGGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCC-cCcchHHHHHHHHHhCccCcEecCCCCC
Confidence 88888777765 56777788888888887 6777766 447777888888777754
No 72
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.50 E-value=1e-14 Score=148.15 Aligned_cols=169 Identities=22% Similarity=0.244 Sum_probs=136.4
Q ss_pred CceEEeccCCCCC-cCCCc---cCCCCCceEEEecCCCCCCccchHHhcCC-----CCCcEEEccCCCCCCCc-cccccC
Q 047163 478 GPIAISLPHRDIQ-ELPER---LQCPNLQLFLFFGKGYGPMQISDLFFEGT-----KELKDLSLTRIPFSSLP-SSLGSL 547 (658)
Q Consensus 478 ~~~~l~l~~~~~~-~~~~~---~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-----~~L~~L~l~~~~~~~lp-~~i~~l 547 (658)
+++++.+.+|.+. .+|.. ..+++|+.|++++|... .+|. .+..+ ++|++|++++|.+..+| ..++.+
T Consensus 96 ~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~--~~~~-~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l 172 (312)
T 1wwl_A 96 GLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWA--TRDA-WLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF 172 (312)
T ss_dssp CCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCS--SSSS-HHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred CccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCc--chhH-HHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence 8999999999987 46654 47899999999999743 3343 34555 89999999999999876 789999
Q ss_pred CCcceEEccCCCCCCc----hhh--hccCCCcEEEccCccCCccc---h-hhcCCCCCcEEcccCcccccccCh-hhhcC
Q 047163 548 INLGTLCLEDCPRNDI----AIL--RQLKKLEILRLRHSYTERLP---L-EIGQLTRLRLLDLSNCWRLKVIAP-NVISK 616 (658)
Q Consensus 548 ~~L~~L~L~~~~~~~l----~~~--~~l~~L~~L~l~~~~~~~lp---~-~~~~l~~L~~L~l~~~~~l~~~~~-~~i~~ 616 (658)
++|++|++++|.+... ..+ ..+++|++|++++|.+..+| . .+.++++|++|++++| .++..++ ..+..
T Consensus 173 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~ 251 (312)
T 1wwl_A 173 PALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHN-SLRDAAGAPSCDW 251 (312)
T ss_dssp SSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTS-CCCSSCCCSCCCC
T ss_pred CCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCC-cCCcccchhhhhh
Confidence 9999999999986542 344 88999999999999998554 2 3458899999999999 7887663 33567
Q ss_pred CCCCcEEEcccCCCCcccccCCCccchhhcCCCCccccCCCC
Q 047163 617 LSRLEELYMGNSFPKWDKVEGGSNASLAELKGLSKLDTGHNR 658 (658)
Q Consensus 617 l~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~N~ 658 (658)
+++|++|++++|. ++ .+|..+. ++|+.|++++|+
T Consensus 252 l~~L~~L~Ls~N~-----l~-~ip~~~~--~~L~~L~Ls~N~ 285 (312)
T 1wwl_A 252 PSQLNSLNLSFTG-----LK-QVPKGLP--AKLSVLDLSYNR 285 (312)
T ss_dssp CTTCCEEECTTSC-----CS-SCCSSCC--SEEEEEECCSSC
T ss_pred cCCCCEEECCCCc-----cC-hhhhhcc--CCceEEECCCCC
Confidence 8999999999954 55 6677665 899999999985
No 73
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.50 E-value=1.7e-13 Score=135.32 Aligned_cols=163 Identities=20% Similarity=0.223 Sum_probs=135.0
Q ss_pred CceEEeccCCCCCcCCCccCCCCCceEEEecCCCCCCccchHHhcCCCCCcEEEccCCCCCCCccccccCCCcceEEccC
Q 047163 478 GPIAISLPHRDIQELPERLQCPNLQLFLFFGKGYGPMQISDLFFEGTKELKDLSLTRIPFSSLPSSLGSLINLGTLCLED 557 (658)
Q Consensus 478 ~~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~L~~ 557 (658)
++..+.+..+.+..++....+++|+.|.+.+|. ...++ .+..+++|++|++++|.+..+|. +..+++|++|++++
T Consensus 20 ~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~--i~~l~--~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~ 94 (263)
T 1xeu_A 20 NAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSN--IQSLA--GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNR 94 (263)
T ss_dssp HHHHHHHTCSCTTSEECHHHHTTCSEEECTTSC--CCCCT--TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCS
T ss_pred HHHHHHhcCCCcccccchhhcCcCcEEECcCCC--cccch--HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCC
Confidence 455666777888777766688999999999986 33455 26788999999999999998887 88999999999999
Q ss_pred CCCCCchhhhccCCCcEEEccCccCCccchhhcCCCCCcEEcccCcccccccChhhhcCCCCCcEEEcccCCCCcccccC
Q 047163 558 CPRNDIAILRQLKKLEILRLRHSYTERLPLEIGQLTRLRLLDLSNCWRLKVIAPNVISKLSRLEELYMGNSFPKWDKVEG 637 (658)
Q Consensus 558 ~~~~~l~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~ 637 (658)
|.+..++.+.. ++|++|++++|.+..+| .++++++|++|++++| .++.++. ++.+++|++|++++|. +++
T Consensus 95 N~l~~l~~~~~-~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N-~i~~~~~--l~~l~~L~~L~L~~N~-----i~~ 164 (263)
T 1xeu_A 95 NRLKNLNGIPS-ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNN-KLKSIVM--LGFLSKLEVLDLHGNE-----ITN 164 (263)
T ss_dssp SCCSCCTTCCC-SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTS-CCCBCGG--GGGCTTCCEEECTTSC-----CCB
T ss_pred CccCCcCcccc-CcccEEEccCCccCCCh-hhcCcccccEEECCCC-cCCCChH--HccCCCCCEEECCCCc-----Ccc
Confidence 99888866655 89999999999998886 4889999999999999 7888863 8899999999999854 554
Q ss_pred CCccchhhcCCCCccccCCC
Q 047163 638 GSNASLAELKGLSKLDTGHN 657 (658)
Q Consensus 638 ~~~~~l~~l~~L~~L~l~~N 657 (658)
. ..+..+++|+.|++++|
T Consensus 165 ~--~~l~~l~~L~~L~l~~N 182 (263)
T 1xeu_A 165 T--GGLTRLKKVNWIDLTGQ 182 (263)
T ss_dssp C--TTSTTCCCCCEEEEEEE
T ss_pred h--HHhccCCCCCEEeCCCC
Confidence 4 56888999999998877
No 74
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.50 E-value=1.9e-13 Score=156.07 Aligned_cols=178 Identities=15% Similarity=0.120 Sum_probs=107.3
Q ss_pred ceEEeccCCCCCcCCCccC---CCCCceEEEecCCCCCC--ccchHH-hcCCCCCcEEEccCCCCCCCccccc-cCCCcc
Q 047163 479 PIAISLPHRDIQELPERLQ---CPNLQLFLFFGKGYGPM--QISDLF-FEGTKELKDLSLTRIPFSSLPSSLG-SLINLG 551 (658)
Q Consensus 479 ~~~l~l~~~~~~~~~~~~~---~~~L~~L~l~~~~~~~~--~~~~~~-~~~~~~L~~L~l~~~~~~~lp~~i~-~l~~L~ 551 (658)
++.|.+.+|.+..+|.... .++|+.|.+++|..... .++... ...+.+|+.|++++|.+..+|..+. .+++|+
T Consensus 621 L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~ 700 (876)
T 4ecn_A 621 VEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPIS 700 (876)
T ss_dssp CCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCS
T ss_pred CCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCC
Confidence 7888888888877776542 23477777777753221 111100 0123466777777777776666554 566677
Q ss_pred eEEccCCCCCCc-hhhh--------ccCCCcEEEccCccCCccchhhc--CCCCCcEEcccCcccccccChhhhcCCCCC
Q 047163 552 TLCLEDCPRNDI-AILR--------QLKKLEILRLRHSYTERLPLEIG--QLTRLRLLDLSNCWRLKVIAPNVISKLSRL 620 (658)
Q Consensus 552 ~L~L~~~~~~~l-~~~~--------~l~~L~~L~l~~~~~~~lp~~~~--~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L 620 (658)
+|+|++|.+..+ ..+. ++++|+.|+|++|.+..+|..+. .+++|+.|++++| .++.+|.. ++++++|
T Consensus 701 ~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N-~L~~lp~~-l~~L~~L 778 (876)
T 4ecn_A 701 TIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYN-CFSSFPTQ-PLNSSQL 778 (876)
T ss_dssp EEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSS-CCSSCCCG-GGGCTTC
T ss_pred EEECCCCcCCccChHHhccccccccccCCccEEECCCCCCccchHHhhhccCCCcCEEEeCCC-CCCccchh-hhcCCCC
Confidence 777777666655 2222 22367777777776666666665 6677777777776 66666554 5666777
Q ss_pred cEEEcccCC-CCcccccCCCccchhhcCCCCccccCCCC
Q 047163 621 EELYMGNSF-PKWDKVEGGSNASLAELKGLSKLDTGHNR 658 (658)
Q Consensus 621 ~~L~l~~~~-~~~~~~~~~~~~~l~~l~~L~~L~l~~N~ 658 (658)
+.|++++|. ...|.+.+..|..+.+|++|+.|++++|+
T Consensus 779 ~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~ 817 (876)
T 4ecn_A 779 KAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSND 817 (876)
T ss_dssp CEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSC
T ss_pred CEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCC
Confidence 777765532 11234556666666667777777766664
No 75
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.50 E-value=3.7e-14 Score=144.00 Aligned_cols=168 Identities=15% Similarity=0.081 Sum_probs=118.5
Q ss_pred CceEEeccCCCCCcCCC------ccCCCCCceEEEecCCCCCCccchHHhcCCCCCcEEEccCCCCCC---Cc--ccccc
Q 047163 478 GPIAISLPHRDIQELPE------RLQCPNLQLFLFFGKGYGPMQISDLFFEGTKELKDLSLTRIPFSS---LP--SSLGS 546 (658)
Q Consensus 478 ~~~~l~l~~~~~~~~~~------~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~---lp--~~i~~ 546 (658)
+++.+.+++|.+..... ...+++|+.|.+++|. ...++...+..+++|++|++++|.+.. +| ..++.
T Consensus 118 ~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~--l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~ 195 (310)
T 4glp_A 118 ALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAH--SPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHK 195 (310)
T ss_dssp CCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCS--SCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTS
T ss_pred CCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCC--cchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhc
Confidence 67777777777654221 1247788888888876 344555556778888888888887652 32 23357
Q ss_pred CCCcceEEccCCCCCCchh-----hhccCCCcEEEccCccCCcc-chhhcCC---CCCcEEcccCcccccccChhhhcCC
Q 047163 547 LINLGTLCLEDCPRNDIAI-----LRQLKKLEILRLRHSYTERL-PLEIGQL---TRLRLLDLSNCWRLKVIAPNVISKL 617 (658)
Q Consensus 547 l~~L~~L~L~~~~~~~l~~-----~~~l~~L~~L~l~~~~~~~l-p~~~~~l---~~L~~L~l~~~~~l~~~~~~~i~~l 617 (658)
+++|++|+|++|.+..++. +..+++|++|++++|.+..+ |..++.+ ++|++|++++| .++.+|.. + .
T Consensus 196 l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N-~l~~lp~~-~--~ 271 (310)
T 4glp_A 196 FPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFA-GLEQVPKG-L--P 271 (310)
T ss_dssp SCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSS-CCCSCCSC-C--C
T ss_pred CCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCC-CCCchhhh-h--c
Confidence 7788888888888876632 46778888888888887776 7666666 58888888888 78777765 3 2
Q ss_pred CCCcEEEcccCCCCcccccCCCccchhhcCCCCccccCCCC
Q 047163 618 SRLEELYMGNSFPKWDKVEGGSNASLAELKGLSKLDTGHNR 658 (658)
Q Consensus 618 ~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~N~ 658 (658)
++|++|++++|. +++. |. +..+++|+.|++++|+
T Consensus 272 ~~L~~L~Ls~N~-----l~~~-~~-~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 272 AKLRVLDLSSNR-----LNRA-PQ-PDELPEVDNLTLDGNP 305 (310)
T ss_dssp SCCSCEECCSCC-----CCSC-CC-TTSCCCCSCEECSSTT
T ss_pred CCCCEEECCCCc-----CCCC-ch-hhhCCCccEEECcCCC
Confidence 788888888843 5542 33 5778899999998884
No 76
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.50 E-value=8.7e-15 Score=149.13 Aligned_cols=163 Identities=18% Similarity=0.181 Sum_probs=79.6
Q ss_pred CceEEeccCCCCCcCCCccCCCCCceEEEecCCCCCCccchHHhcCCCCCcEEEccCCCCCCCc-cccccCCCcceEEcc
Q 047163 478 GPIAISLPHRDIQELPERLQCPNLQLFLFFGKGYGPMQISDLFFEGTKELKDLSLTRIPFSSLP-SSLGSLINLGTLCLE 556 (658)
Q Consensus 478 ~~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp-~~i~~l~~L~~L~L~ 556 (658)
+++.+.+.+|.+..++. .++|+.|.+++|.. ..++. ..+++|+.|++++|.+..++ ..++.+++|++|+++
T Consensus 81 ~L~~L~Ls~n~l~~l~~---~~~L~~L~l~~n~l--~~~~~---~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls 152 (317)
T 3o53_A 81 TLRTLDLNNNYVQELLV---GPSIETLHAANNNI--SRVSC---SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLK 152 (317)
T ss_dssp TCCEEECCSSEEEEEEE---CTTCCEEECCSSCC--SEEEE---CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECT
T ss_pred CCCEEECcCCccccccC---CCCcCEEECCCCcc--CCcCc---cccCCCCEEECCCCCCCCccchhhhccCCCCEEECC
Confidence 45566666555544432 24555555555541 11221 12445555555555555442 244445555555555
Q ss_pred CCCCCCc--hhh-hccCCCcEEEccCccCCccchhhcCCCCCcEEcccCcccccccChhhhcCCCCCcEEEcccCCCCcc
Q 047163 557 DCPRNDI--AIL-RQLKKLEILRLRHSYTERLPLEIGQLTRLRLLDLSNCWRLKVIAPNVISKLSRLEELYMGNSFPKWD 633 (658)
Q Consensus 557 ~~~~~~l--~~~-~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~~~~ 633 (658)
+|.+..+ ..+ ..+++|++|++++|.+..+|.. ..+++|++|++++| .++.+|+. +..+++|+.|++++|.
T Consensus 153 ~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~l~~L~~L~Ls~N-~l~~l~~~-~~~l~~L~~L~L~~N~---- 225 (317)
T 3o53_A 153 LNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQ-VVFAKLKTLDLSSN-KLAFMGPE-FQSAAGVTWISLRNNK---- 225 (317)
T ss_dssp TSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECC-CCCTTCCEEECCSS-CCCEECGG-GGGGTTCSEEECTTSC----
T ss_pred CCCCCcccHHHHhhccCcCCEEECCCCcCcccccc-cccccCCEEECCCC-cCCcchhh-hcccCcccEEECcCCc----
Confidence 5555443 222 2445555555555555555432 23555555555555 45555544 4555555555555532
Q ss_pred cccCCCccchhhcCCCCccccCCC
Q 047163 634 KVEGGSNASLAELKGLSKLDTGHN 657 (658)
Q Consensus 634 ~~~~~~~~~l~~l~~L~~L~l~~N 657 (658)
++ .+|..+..+++|+.|++++|
T Consensus 226 -l~-~l~~~~~~l~~L~~L~l~~N 247 (317)
T 3o53_A 226 -LV-LIEKALRFSQNLEHFDLRGN 247 (317)
T ss_dssp -CC-EECTTCCCCTTCCEEECTTC
T ss_pred -cc-chhhHhhcCCCCCEEEccCC
Confidence 32 23444455555555555554
No 77
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.50 E-value=1.2e-13 Score=156.38 Aligned_cols=171 Identities=20% Similarity=0.164 Sum_probs=141.1
Q ss_pred CceEEeccCCCCCcCCCc--cCCCCCceEEEecCCCCCCccchHHhcCCCCCcEEEccCCCCCCCcc-ccccCCCcceEE
Q 047163 478 GPIAISLPHRDIQELPER--LQCPNLQLFLFFGKGYGPMQISDLFFEGTKELKDLSLTRIPFSSLPS-SLGSLINLGTLC 554 (658)
Q Consensus 478 ~~~~l~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~ 554 (658)
+++++.+++|.+..++.. ..+++|++|++++|. ...+++..+.++++|++|++++|.+..+|. .++.+++|++|+
T Consensus 26 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~--l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~ 103 (680)
T 1ziw_A 26 NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNT--ISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELH 103 (680)
T ss_dssp TCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSC--CCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEE
T ss_pred CCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCc--cCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEE
Confidence 899999999999888763 488999999999986 445656668899999999999999999886 589999999999
Q ss_pred ccCCCCCCc--hhhhccCCCcEEEccCccCCcc-chhhcCCCCCcEEcccCcccccccChhhhc--CCCCCcEEEcccCC
Q 047163 555 LEDCPRNDI--AILRQLKKLEILRLRHSYTERL-PLEIGQLTRLRLLDLSNCWRLKVIAPNVIS--KLSRLEELYMGNSF 629 (658)
Q Consensus 555 L~~~~~~~l--~~~~~l~~L~~L~l~~~~~~~l-p~~~~~l~~L~~L~l~~~~~l~~~~~~~i~--~l~~L~~L~l~~~~ 629 (658)
+++|.+..+ ..++++++|++|++++|.+... |..++++++|++|++++| .++.+++..++ .+++|++|++++|.
T Consensus 104 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~~~L~~L~L~~n~ 182 (680)
T 1ziw_A 104 LMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNN-KIQALKSEELDIFANSSLKKLELSSNQ 182 (680)
T ss_dssp CCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSS-CCCCBCHHHHGGGTTCEESEEECTTCC
T ss_pred CCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCC-cccccCHHHhhccccccccEEECCCCc
Confidence 999998887 4789999999999999988776 466889999999999999 78888876554 56899999999854
Q ss_pred CCcccccCCCccchhhcCCCCccccCC
Q 047163 630 PKWDKVEGGSNASLAELKGLSKLDTGH 656 (658)
Q Consensus 630 ~~~~~~~~~~~~~l~~l~~L~~L~l~~ 656 (658)
+.+..|..+..+++|+.|++.+
T Consensus 183 -----l~~~~~~~~~~l~~L~~L~l~~ 204 (680)
T 1ziw_A 183 -----IKEFSPGCFHAIGRLFGLFLNN 204 (680)
T ss_dssp -----CCCBCTTGGGGSSEECEEECTT
T ss_pred -----ccccChhhhhhhhhhhhhhccc
Confidence 6666677676665554444433
No 78
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.49 E-value=2.4e-13 Score=129.30 Aligned_cols=146 Identities=21% Similarity=0.322 Sum_probs=123.2
Q ss_pred ceEEEecCCCCCCccchHHhcCCCCCcEEEccCCCCCCCccc-cccCCCcceEEccCCCCCCc--hhhhccCCCcEEEcc
Q 047163 502 QLFLFFGKGYGPMQISDLFFEGTKELKDLSLTRIPFSSLPSS-LGSLINLGTLCLEDCPRNDI--AILRQLKKLEILRLR 578 (658)
Q Consensus 502 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~-i~~l~~L~~L~L~~~~~~~l--~~~~~l~~L~~L~l~ 578 (658)
+.+.+.+++ ...+|..+ .++|++|++++|.+..+|.. +..+++|++|++++|.+..+ ..+..+++|++|+++
T Consensus 10 ~~v~c~~~~--l~~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls 84 (208)
T 2o6s_A 10 TTVECYSQG--RTSVPTGI---PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLS 84 (208)
T ss_dssp TEEECCSSC--CSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CEEEecCCC--ccCCCCCC---CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECC
Confidence 455666664 44455432 46899999999999988764 67899999999999999888 347899999999999
Q ss_pred CccCCccchh-hcCCCCCcEEcccCcccccccChhhhcCCCCCcEEEcccCCCCcccccCCCccchhhcCCCCccccCCC
Q 047163 579 HSYTERLPLE-IGQLTRLRLLDLSNCWRLKVIAPNVISKLSRLEELYMGNSFPKWDKVEGGSNASLAELKGLSKLDTGHN 657 (658)
Q Consensus 579 ~~~~~~lp~~-~~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~N 657 (658)
+|.+..+|.. +.++++|++|++++| .++.+++..+.++++|++|++++| .+++..+..+..+++|+.|++++|
T Consensus 85 ~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N-----~l~~~~~~~~~~l~~L~~L~l~~N 158 (208)
T 2o6s_A 85 TNQLQSLPNGVFDKLTQLKELALNTN-QLQSLPDGVFDKLTQLKDLRLYQN-----QLKSVPDGVFDRLTSLQYIWLHDN 158 (208)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-----CCSCCCTTTTTTCTTCCEEECCSC
T ss_pred CCcCCccCHhHhcCccCCCEEEcCCC-cCcccCHhHhccCCcCCEEECCCC-----ccceeCHHHhccCCCccEEEecCC
Confidence 9999999765 689999999999999 899999887899999999999995 477666667899999999999998
Q ss_pred C
Q 047163 658 R 658 (658)
Q Consensus 658 ~ 658 (658)
.
T Consensus 159 ~ 159 (208)
T 2o6s_A 159 P 159 (208)
T ss_dssp C
T ss_pred C
Confidence 4
No 79
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.49 E-value=6.1e-14 Score=125.70 Aligned_cols=127 Identities=24% Similarity=0.241 Sum_probs=97.2
Q ss_pred CCCCcEEEccCCCCC--CCccccccCCCcceEEccCCCCCCchhhhccCCCcEEEccCccCCc-cchhhcCCCCCcEEcc
Q 047163 524 TKELKDLSLTRIPFS--SLPSSLGSLINLGTLCLEDCPRNDIAILRQLKKLEILRLRHSYTER-LPLEIGQLTRLRLLDL 600 (658)
Q Consensus 524 ~~~L~~L~l~~~~~~--~lp~~i~~l~~L~~L~L~~~~~~~l~~~~~l~~L~~L~l~~~~~~~-lp~~~~~l~~L~~L~l 600 (658)
.++|+.|++++|.+. .+|..+..+++|++|++++|.+..+..++.+++|++|++++|.+.. +|..++++++|++|++
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l 95 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL 95 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence 467888888888877 6777777888888888888887777777888888888888887777 6777777888888888
Q ss_pred cCcccccccC-hhhhcCCCCCcEEEcccCCCCcccccCCCc---cchhhcCCCCccccCC
Q 047163 601 SNCWRLKVIA-PNVISKLSRLEELYMGNSFPKWDKVEGGSN---ASLAELKGLSKLDTGH 656 (658)
Q Consensus 601 ~~~~~l~~~~-~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~---~~l~~l~~L~~L~l~~ 656 (658)
++| .++.++ +..++.+++|++|++++| .+++..+ ..+..+++|+.|++++
T Consensus 96 s~N-~i~~~~~~~~~~~l~~L~~L~l~~N-----~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 96 SGN-KIKDLSTIEPLKKLENLKSLDLFNC-----EVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp TTS-CCCSHHHHGGGGGCTTCCEEECTTC-----GGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCC-cCCChHHHHHHhhCCCCCEEeCcCC-----cccchHHHHHHHHHHCCCcccccCCC
Confidence 888 677764 244788888888888874 3555444 4678888888888764
No 80
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.49 E-value=3.8e-14 Score=156.07 Aligned_cols=172 Identities=20% Similarity=0.248 Sum_probs=134.4
Q ss_pred CceEEeccCCCCCcCCC--ccCCCCCceEEEecCCCCCCccchHHhcCCCCCcEEEccCCCCCCCccc-cccCCCcceEE
Q 047163 478 GPIAISLPHRDIQELPE--RLQCPNLQLFLFFGKGYGPMQISDLFFEGTKELKDLSLTRIPFSSLPSS-LGSLINLGTLC 554 (658)
Q Consensus 478 ~~~~l~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~-i~~l~~L~~L~ 554 (658)
.++++.+++|.+..+++ ...+++|++|++++|. ...+++..|.++++|++|++++|.+..+|+. ++.+++|++|+
T Consensus 27 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~--i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 104 (549)
T 2z81_A 27 AMKSLDLSFNKITYIGHGDLRACANLQVLILKSSR--INTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLN 104 (549)
T ss_dssp TCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSC--CCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEE
T ss_pred CccEEECcCCccCccChhhhhcCCcccEEECCCCC--cCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEE
Confidence 78888998888877643 2378889999998886 4455555678888999999999988877654 88889999999
Q ss_pred ccCCCCCCc---hhhhccCCCcEEEccCcc-CCccc-hhhcCCCCCcEEcccCcccccccChhhhcCCCCCcEEEcccCC
Q 047163 555 LEDCPRNDI---AILRQLKKLEILRLRHSY-TERLP-LEIGQLTRLRLLDLSNCWRLKVIAPNVISKLSRLEELYMGNSF 629 (658)
Q Consensus 555 L~~~~~~~l---~~~~~l~~L~~L~l~~~~-~~~lp-~~~~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~ 629 (658)
+++|.+..+ ..++.+++|++|++++|. +..+| ..++++++|++|++++| .++...+..++.+++|++|+++.|.
T Consensus 105 Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~l~~l~~L~~L~l~~n~ 183 (549)
T 2z81_A 105 LMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKAL-SLRNYQSQSLKSIRDIHHLTLHLSE 183 (549)
T ss_dssp CTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEET-TCCEECTTTTTTCSEEEEEEEECSB
T ss_pred CCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCC-cccccChhhhhccccCceEecccCc
Confidence 999887754 568888899999998886 67776 56888899999999988 7777666668888899999988753
Q ss_pred CCcccccCCCccc-hhhcCCCCccccCCCC
Q 047163 630 PKWDKVEGGSNAS-LAELKGLSKLDTGHNR 658 (658)
Q Consensus 630 ~~~~~~~~~~~~~-l~~l~~L~~L~l~~N~ 658 (658)
.. ..|.. +..+++|+.|++++|+
T Consensus 184 -----~~-~~~~~~~~~l~~L~~L~L~~n~ 207 (549)
T 2z81_A 184 -----SA-FLLEIFADILSSVRYLELRDTN 207 (549)
T ss_dssp -----ST-THHHHHHHSTTTBSEEEEESCB
T ss_pred -----cc-ccchhhHhhcccccEEEccCCc
Confidence 22 33333 3568999999998874
No 81
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.48 E-value=4.6e-14 Score=156.22 Aligned_cols=171 Identities=23% Similarity=0.274 Sum_probs=140.6
Q ss_pred CceEEeccCCCCCcCCC--ccCCCCCceEEEecCCCCCCccchHHhcCCCCCcEEEccCCCCCCCc-cccccCCCcceEE
Q 047163 478 GPIAISLPHRDIQELPE--RLQCPNLQLFLFFGKGYGPMQISDLFFEGTKELKDLSLTRIPFSSLP-SSLGSLINLGTLC 554 (658)
Q Consensus 478 ~~~~l~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp-~~i~~l~~L~~L~ 554 (658)
+++++.+++|.+..++. ...+++|++|++++|. ...+++..|.++++|++|++++|.+..+| ..++.+++|++|+
T Consensus 29 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~--i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (570)
T 2z63_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE--IQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 106 (570)
T ss_dssp SCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCC--CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred cccEEEccCCccCccChhHhhCCCCceEEECCCCc--CCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccc
Confidence 78999999999887764 3488999999999986 45566667889999999999999998765 6788999999999
Q ss_pred ccCCCCCCch--hhhccCCCcEEEccCccCCc--cchhhcCCCCCcEEcccCcccccccChhhhcCCCCC----cEEEcc
Q 047163 555 LEDCPRNDIA--ILRQLKKLEILRLRHSYTER--LPLEIGQLTRLRLLDLSNCWRLKVIAPNVISKLSRL----EELYMG 626 (658)
Q Consensus 555 L~~~~~~~l~--~~~~l~~L~~L~l~~~~~~~--lp~~~~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L----~~L~l~ 626 (658)
+++|.+..++ .++.+++|++|++++|.+.. +|..++++++|++|++++| .++.+++..++.+++| ..|+++
T Consensus 107 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~~~~~L~l~ 185 (570)
T 2z63_A 107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYCTDLRVLHQMPLLNLSLDLS 185 (570)
T ss_dssp CTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTS-CCCEECGGGGHHHHTCTTCCCEEECT
T ss_pred ccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCC-ccceecHHHccchhccchhhhhcccC
Confidence 9999988873 58899999999999998775 6888999999999999999 7888887777878777 889998
Q ss_pred cCCCCcccccCCCccchhhcCCCCccccCCC
Q 047163 627 NSFPKWDKVEGGSNASLAELKGLSKLDTGHN 657 (658)
Q Consensus 627 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~N 657 (658)
+|. +.+..|..+..+ +|+.|++++|
T Consensus 186 ~n~-----l~~~~~~~~~~~-~L~~L~l~~n 210 (570)
T 2z63_A 186 LNP-----MNFIQPGAFKEI-RLHKLTLRNN 210 (570)
T ss_dssp TCC-----CCEECTTTTTTC-EEEEEEEESC
T ss_pred CCC-----ceecCHHHhccC-cceeEecccc
Confidence 854 555556556555 6777777665
No 82
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.48 E-value=3.6e-14 Score=156.33 Aligned_cols=172 Identities=16% Similarity=0.128 Sum_probs=105.8
Q ss_pred CceEEeccCCCCCcCCC--ccCCCCCceEEEecCCCCCCccchHHhcCCCCCcEEEccCCCCCC--CccccccCCCcceE
Q 047163 478 GPIAISLPHRDIQELPE--RLQCPNLQLFLFFGKGYGPMQISDLFFEGTKELKDLSLTRIPFSS--LPSSLGSLINLGTL 553 (658)
Q Consensus 478 ~~~~l~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--lp~~i~~l~~L~~L 553 (658)
+++++.+++|.+..+++ ...+++|++|++++|. ...+++..+.++++|++|++++|.+.. .|..++.+++|++|
T Consensus 51 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~--l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L 128 (549)
T 2z81_A 51 NLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNH--LSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTL 128 (549)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC--CCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEE
T ss_pred cccEEECCCCCcCccChhhccccccCCEEECCCCc--cCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEE
Confidence 56677777776666543 2266677777777764 344555556667777777777777663 35566667777777
Q ss_pred EccCCC-CCCc--hhhhccCCCcEEEccCccCCc-cchhhcCCCCCcEEcccCcccccccChhhhcCCCCCcEEEcccCC
Q 047163 554 CLEDCP-RNDI--AILRQLKKLEILRLRHSYTER-LPLEIGQLTRLRLLDLSNCWRLKVIAPNVISKLSRLEELYMGNSF 629 (658)
Q Consensus 554 ~L~~~~-~~~l--~~~~~l~~L~~L~l~~~~~~~-lp~~~~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~ 629 (658)
++++|. +..+ ..+..+++|++|++++|.+.. .|..++++++|++|+++.| .+..++...++.+++|++|++++|.
T Consensus 129 ~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n-~~~~~~~~~~~~l~~L~~L~L~~n~ 207 (549)
T 2z81_A 129 RIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLS-ESAFLLEIFADILSSVRYLELRDTN 207 (549)
T ss_dssp EEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECS-BSTTHHHHHHHSTTTBSEEEEESCB
T ss_pred ECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccC-cccccchhhHhhcccccEEEccCCc
Confidence 777765 4444 356667777777777766554 3566667777777777766 5555555544566777777776643
Q ss_pred CCcccccCCC--cc-chhhcCCCCccccCCC
Q 047163 630 PKWDKVEGGS--NA-SLAELKGLSKLDTGHN 657 (658)
Q Consensus 630 ~~~~~~~~~~--~~-~l~~l~~L~~L~l~~N 657 (658)
+.+.. |. ....+++|+.|++++|
T Consensus 208 -----l~~~~~~~~~~~~~~~~L~~L~l~~n 233 (549)
T 2z81_A 208 -----LARFQFSPLPVDEVSSPMKKLAFRGS 233 (549)
T ss_dssp -----CTTCCCCCCSSCCCCCCCCEEEEESC
T ss_pred -----cccccccccchhhhhhcccceecccc
Confidence 33321 11 2234566666666655
No 83
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.48 E-value=3.2e-13 Score=144.44 Aligned_cols=158 Identities=18% Similarity=0.146 Sum_probs=95.3
Q ss_pred CceEEeccCCCCCcCCCccCCCCCceEEEecCCCCCCccchHHhcCCCCCcEEEccCCCCCCCccccccCCCcceEEccC
Q 047163 478 GPIAISLPHRDIQELPERLQCPNLQLFLFFGKGYGPMQISDLFFEGTKELKDLSLTRIPFSSLPSSLGSLINLGTLCLED 557 (658)
Q Consensus 478 ~~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~L~~ 557 (658)
+++++.+.+|.+..+| ...+++|+.|++++|.... ++ +..+++|++|++++|.+..+| ++.+++|++|++++
T Consensus 65 ~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N~l~~--~~---~~~l~~L~~L~L~~N~l~~l~--~~~l~~L~~L~l~~ 136 (457)
T 3bz5_A 65 GLTKLICTSNNITTLD-LSQNTNLTYLACDSNKLTN--LD---VTPLTKLTYLNCDTNKLTKLD--VSQNPLLTYLNCAR 136 (457)
T ss_dssp TCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSC--CC---CTTCTTCCEEECCSSCCSCCC--CTTCTTCCEEECTT
T ss_pred CCCEEEccCCcCCeEc-cccCCCCCEEECcCCCCce--ee---cCCCCcCCEEECCCCcCCeec--CCCCCcCCEEECCC
Confidence 5556666666555553 3355566666666654222 22 445566666666666665554 55566666666666
Q ss_pred CCCCCchhhhccCCCcEEEccCc-cCCccchhhcCCCCCcEEcccCcccccccChhhhcCCCCCcEEEcccCCCCccccc
Q 047163 558 CPRNDIAILRQLKKLEILRLRHS-YTERLPLEIGQLTRLRLLDLSNCWRLKVIAPNVISKLSRLEELYMGNSFPKWDKVE 636 (658)
Q Consensus 558 ~~~~~l~~~~~l~~L~~L~l~~~-~~~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~ 636 (658)
|.+..++ ++.+++|++|++++| .++.+ .++.+++|++|++++| .++.+| ++.+++|+.|++++|. ++
T Consensus 137 N~l~~l~-l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n-~l~~l~---l~~l~~L~~L~l~~N~-----l~ 204 (457)
T 3bz5_A 137 NTLTEID-VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFN-KITELD---VSQNKLLNRLNCDTNN-----IT 204 (457)
T ss_dssp SCCSCCC-CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSS-CCCCCC---CTTCTTCCEEECCSSC-----CS
T ss_pred Cccceec-cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCC-ccceec---cccCCCCCEEECcCCc-----CC
Confidence 6655542 555666666666666 44444 2556677777777777 666654 5667777777777643 44
Q ss_pred CCCccchhhcCCCCccccCCCC
Q 047163 637 GGSNASLAELKGLSKLDTGHNR 658 (658)
Q Consensus 637 ~~~~~~l~~l~~L~~L~l~~N~ 658 (658)
+. .+..+++|+.|++++|+
T Consensus 205 ~~---~l~~l~~L~~L~Ls~N~ 223 (457)
T 3bz5_A 205 KL---DLNQNIQLTFLDCSSNK 223 (457)
T ss_dssp CC---CCTTCTTCSEEECCSSC
T ss_pred ee---ccccCCCCCEEECcCCc
Confidence 32 36778888888888774
No 84
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.48 E-value=2.8e-13 Score=151.39 Aligned_cols=170 Identities=16% Similarity=0.148 Sum_probs=140.3
Q ss_pred CceEEeccCCCCCcC-CCcc--------CCCCCceEEEecCCCCCCccchHHhcCCCCCcEEEccCCCCCCCccccccC-
Q 047163 478 GPIAISLPHRDIQEL-PERL--------QCPNLQLFLFFGKGYGPMQISDLFFEGTKELKDLSLTRIPFSSLPSSLGSL- 547 (658)
Q Consensus 478 ~~~~l~l~~~~~~~~-~~~~--------~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~i~~l- 547 (658)
+++.+.+.+|.+... |..+ .+++|+.|.+++|.. ..+|..++..+++|++|++++|.+..+|..+...
T Consensus 403 ~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l--~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~ 480 (636)
T 4eco_A 403 VMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQI--SKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDE 480 (636)
T ss_dssp CEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCC--CSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEET
T ss_pred ccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCcc--CcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccc
Confidence 688999999988653 2221 567999999999974 4788888889999999999999999888765442
Q ss_pred -------CCcceEEccCCCCCCc-hhhh--ccCCCcEEEccCccCCccchhhcCCCCCcEEcccC------cccccccCh
Q 047163 548 -------INLGTLCLEDCPRNDI-AILR--QLKKLEILRLRHSYTERLPLEIGQLTRLRLLDLSN------CWRLKVIAP 611 (658)
Q Consensus 548 -------~~L~~L~L~~~~~~~l-~~~~--~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~------~~~l~~~~~ 611 (658)
++|++|+|++|.+..+ ..+. .+++|++|++++|.+..+|..++++++|+.|++++ | .+....|
T Consensus 481 ~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N-~l~~~~p 559 (636)
T 4eco_A 481 NENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGN-RTLREWP 559 (636)
T ss_dssp TEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCC-BCCCCCC
T ss_pred cccccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcccccC-cccccCh
Confidence 3999999999999988 5666 89999999999999999999999999999999954 5 4444444
Q ss_pred hhhcCCCCCcEEEcccCCCCcccccCCCccchhhcCCCCccccCCCC
Q 047163 612 NVISKLSRLEELYMGNSFPKWDKVEGGSNASLAELKGLSKLDTGHNR 658 (658)
Q Consensus 612 ~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~N~ 658 (658)
..++++++|++|++++|. + +.+|..+. ++|+.|++++|+
T Consensus 560 ~~l~~l~~L~~L~Ls~N~-----l-~~ip~~~~--~~L~~L~Ls~N~ 598 (636)
T 4eco_A 560 EGITLCPSLTQLQIGSND-----I-RKVNEKIT--PNISVLDIKDNP 598 (636)
T ss_dssp TTGGGCSSCCEEECCSSC-----C-CBCCSCCC--TTCCEEECCSCT
T ss_pred HHHhcCCCCCEEECCCCc-----C-CccCHhHh--CcCCEEECcCCC
Confidence 458999999999999954 5 57777765 899999999984
No 85
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.48 E-value=6.3e-14 Score=151.29 Aligned_cols=164 Identities=18% Similarity=0.171 Sum_probs=105.4
Q ss_pred CceEEeccCCCCCcCCCccCCCCCceEEEecCCCCCCccchHHhcCCCCCcEEEccCCCCCCC-ccccccCCCcceEEcc
Q 047163 478 GPIAISLPHRDIQELPERLQCPNLQLFLFFGKGYGPMQISDLFFEGTKELKDLSLTRIPFSSL-PSSLGSLINLGTLCLE 556 (658)
Q Consensus 478 ~~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~L~ 556 (658)
+++.|.+++|.+..++. .++|+.|.+++|.. ..++. ..+++|+.|++++|.+..+ |..++.+++|++|+|+
T Consensus 81 ~L~~L~Ls~N~l~~l~~---~~~L~~L~L~~N~l--~~~~~---~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls 152 (487)
T 3oja_A 81 TLRTLDLNNNYVQELLV---GPSIETLHAANNNI--SRVSC---SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLK 152 (487)
T ss_dssp TCCEEECCSSEEEEEEE---CTTCCEEECCSSCC--CCEEE---CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECT
T ss_pred CCCEEEecCCcCCCCCC---CCCcCEEECcCCcC--CCCCc---cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECC
Confidence 34444444444443332 14444555554432 12222 2356777777777777765 4467777788888888
Q ss_pred CCCCCCc--hhhh-ccCCCcEEEccCccCCccchhhcCCCCCcEEcccCcccccccChhhhcCCCCCcEEEcccCCCCcc
Q 047163 557 DCPRNDI--AILR-QLKKLEILRLRHSYTERLPLEIGQLTRLRLLDLSNCWRLKVIAPNVISKLSRLEELYMGNSFPKWD 633 (658)
Q Consensus 557 ~~~~~~l--~~~~-~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~~~~ 633 (658)
+|.+... ..+. .+++|++|+|++|.+..+|. ...+++|++|++++| .++.+|+. ++.+++|+.|++++|.
T Consensus 153 ~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~Ls~N-~l~~~~~~-~~~l~~L~~L~Ls~N~---- 225 (487)
T 3oja_A 153 LNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG-QVVFAKLKTLDLSSN-KLAFMGPE-FQSAAGVTWISLRNNK---- 225 (487)
T ss_dssp TSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC-CCCCTTCCEEECCSS-CCCEECGG-GGGGTTCSEEECTTSC----
T ss_pred CCCCCCcChHHHhhhCCcccEEecCCCccccccc-cccCCCCCEEECCCC-CCCCCCHh-HcCCCCccEEEecCCc----
Confidence 8777764 4444 67778888888877777765 345778888888887 77777776 6777888888887743
Q ss_pred cccCCCccchhhcCCCCccccCCCC
Q 047163 634 KVEGGSNASLAELKGLSKLDTGHNR 658 (658)
Q Consensus 634 ~~~~~~~~~l~~l~~L~~L~l~~N~ 658 (658)
+++ +|..+..+++|+.|++++|.
T Consensus 226 -l~~-lp~~l~~l~~L~~L~l~~N~ 248 (487)
T 3oja_A 226 -LVL-IEKALRFSQNLEHFDLRGNG 248 (487)
T ss_dssp -CCE-ECTTCCCCTTCCEEECTTCC
T ss_pred -Ccc-cchhhccCCCCCEEEcCCCC
Confidence 443 56667777788888887774
No 86
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.48 E-value=1e-13 Score=160.31 Aligned_cols=173 Identities=21% Similarity=0.242 Sum_probs=143.4
Q ss_pred CceEEeccCCCCCcCCC--ccCCCCCceEEEecCCCCCCccchHHhcCCCCCcEEEccCCCCCCC-ccccccCCCcceEE
Q 047163 478 GPIAISLPHRDIQELPE--RLQCPNLQLFLFFGKGYGPMQISDLFFEGTKELKDLSLTRIPFSSL-PSSLGSLINLGTLC 554 (658)
Q Consensus 478 ~~~~l~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~ 554 (658)
++++|.+++|.+..+++ ...+++|+.|++++|. ....+++..|.++++|++|+|++|.+..+ |..++.+++|++|+
T Consensus 25 ~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~-~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 103 (844)
T 3j0a_A 25 TTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQY-TPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELR 103 (844)
T ss_dssp TCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTC-CCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEE
T ss_pred CcCEEECCCCcCCccChhHCcccccCeEEeCCCCC-CccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEee
Confidence 89999999999887643 3389999999999986 34556566689999999999999999866 78899999999999
Q ss_pred ccCCCCCC--chh--hhccCCCcEEEccCccCCccc--hhhcCCCCCcEEcccCcccccccChhhhcCC--CCCcEEEcc
Q 047163 555 LEDCPRND--IAI--LRQLKKLEILRLRHSYTERLP--LEIGQLTRLRLLDLSNCWRLKVIAPNVISKL--SRLEELYMG 626 (658)
Q Consensus 555 L~~~~~~~--l~~--~~~l~~L~~L~l~~~~~~~lp--~~~~~l~~L~~L~l~~~~~l~~~~~~~i~~l--~~L~~L~l~ 626 (658)
|++|.+.. +.. ++++++|++|++++|.+..++ ..++++++|++|++++| .++...+..++.+ ++|+.|+++
T Consensus 104 Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N-~i~~~~~~~l~~l~~~~L~~L~L~ 182 (844)
T 3j0a_A 104 LYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSN-QIFLVCEHELEPLQGKTLSFFSLA 182 (844)
T ss_dssp CTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESS-CCCCCCSGGGHHHHHCSSCCCEEC
T ss_pred CcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCC-cCCeeCHHHcccccCCccceEECC
Confidence 99999876 333 899999999999999887763 57899999999999999 7877776667777 899999999
Q ss_pred cCCCCcccccCCCccchhhcCC------CCccccCCC
Q 047163 627 NSFPKWDKVEGGSNASLAELKG------LSKLDTGHN 657 (658)
Q Consensus 627 ~~~~~~~~~~~~~~~~l~~l~~------L~~L~l~~N 657 (658)
+|. +.+..|..+..+.+ |+.|++++|
T Consensus 183 ~n~-----l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n 214 (844)
T 3j0a_A 183 ANS-----LYSRVSVDWGKCMNPFRNMVLEILDVSGN 214 (844)
T ss_dssp CSB-----SCCCCCCCCCSSSCTTTTCCBSEEBCSSC
T ss_pred CCc-----cccccccchhhcCCccccCceeEEecCCC
Confidence 853 66677776666665 899999887
No 87
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.48 E-value=1.3e-13 Score=139.84 Aligned_cols=172 Identities=19% Similarity=0.165 Sum_probs=136.7
Q ss_pred CceEEeccCCCCCc-CCCc---cCCCCCceEEEecCCCCCCc--cchHHhcCCCCCcEEEccCCCCCCCc-cccccCCCc
Q 047163 478 GPIAISLPHRDIQE-LPER---LQCPNLQLFLFFGKGYGPMQ--ISDLFFEGTKELKDLSLTRIPFSSLP-SSLGSLINL 550 (658)
Q Consensus 478 ~~~~l~l~~~~~~~-~~~~---~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~lp-~~i~~l~~L 550 (658)
+++++.+.+|.+.. .|.. ..+++|++|++++|...... ++...+..+++|++|++++|.+..+| ..++.+++|
T Consensus 92 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L 171 (310)
T 4glp_A 92 RLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPAL 171 (310)
T ss_dssp CCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTC
T ss_pred ceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCC
Confidence 69999999998865 3433 56899999999999744321 22233457999999999999998765 678899999
Q ss_pred ceEEccCCCCCC---c---hhhhccCCCcEEEccCccCCccchh----hcCCCCCcEEcccCcccccccChhhhcCC---
Q 047163 551 GTLCLEDCPRND---I---AILRQLKKLEILRLRHSYTERLPLE----IGQLTRLRLLDLSNCWRLKVIAPNVISKL--- 617 (658)
Q Consensus 551 ~~L~L~~~~~~~---l---~~~~~l~~L~~L~l~~~~~~~lp~~----~~~l~~L~~L~l~~~~~l~~~~~~~i~~l--- 617 (658)
++|+|++|++.. + ..+..+++|++|++++|.+..+|.. ++++++|++|++++| .++...|..++.+
T Consensus 172 ~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N-~l~~~~p~~~~~~~~~ 250 (310)
T 4glp_A 172 TSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHN-SLRATVNPSAPRCMWS 250 (310)
T ss_dssp CEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTS-CCCCCCCSCCSSCCCC
T ss_pred CEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCC-CCCccchhhHHhccCc
Confidence 999999998764 2 2246899999999999999887753 578899999999999 7888744336666
Q ss_pred CCCcEEEcccCCCCcccccCCCccchhhcCCCCccccCCCC
Q 047163 618 SRLEELYMGNSFPKWDKVEGGSNASLAELKGLSKLDTGHNR 658 (658)
Q Consensus 618 ~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~N~ 658 (658)
++|++|++++|. ++ .+|..+. ++|+.|++++|+
T Consensus 251 ~~L~~L~Ls~N~-----l~-~lp~~~~--~~L~~L~Ls~N~ 283 (310)
T 4glp_A 251 SALNSLNLSFAG-----LE-QVPKGLP--AKLRVLDLSSNR 283 (310)
T ss_dssp TTCCCEECCSSC-----CC-SCCSCCC--SCCSCEECCSCC
T ss_pred CcCCEEECCCCC-----CC-chhhhhc--CCCCEEECCCCc
Confidence 699999999954 55 5666664 899999999985
No 88
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.47 E-value=1.3e-13 Score=150.68 Aligned_cols=142 Identities=15% Similarity=0.131 Sum_probs=119.9
Q ss_pred eEEeccCCCCCcCCCccCCCCCceEEEecCCCCCCccchHHhcCCCCCcEEEccCCCCCCC-ccccccCCCcceEEccCC
Q 047163 480 IAISLPHRDIQELPERLQCPNLQLFLFFGKGYGPMQISDLFFEGTKELKDLSLTRIPFSSL-PSSLGSLINLGTLCLEDC 558 (658)
Q Consensus 480 ~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~L~~~ 558 (658)
+.+.++++.+..+|.... ++|+.|++++|. ...+++..|..+++|++|++++|.+..+ |..++.+++|++|+|++|
T Consensus 3 ~~l~ls~n~l~~ip~~~~-~~L~~L~Ls~n~--i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 79 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS-QKTTILNISQNY--ISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN 79 (520)
T ss_dssp CEEECTTSCCSSCCCSCC-TTCSEEECCSSC--CCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred ceEecCCCCccccccccc-ccccEEECCCCc--ccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence 578888999988887665 899999999996 4556666789999999999999999976 678999999999999999
Q ss_pred CCCCchhhhccCCCcEEEccCccCCc--cchhhcCCCCCcEEcccCcccccccChhhhcCCCCC--cEEEcccCC
Q 047163 559 PRNDIAILRQLKKLEILRLRHSYTER--LPLEIGQLTRLRLLDLSNCWRLKVIAPNVISKLSRL--EELYMGNSF 629 (658)
Q Consensus 559 ~~~~l~~~~~l~~L~~L~l~~~~~~~--lp~~~~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L--~~L~l~~~~ 629 (658)
.+..++.. .+++|++|++++|.+.. +|..++++++|++|++++| .++.. .+..+++| +.|++++|.
T Consensus 80 ~l~~lp~~-~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n-~l~~~---~~~~l~~L~L~~L~l~~n~ 149 (520)
T 2z7x_B 80 KLVKISCH-PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTT-HLEKS---SVLPIAHLNISKVLLVLGE 149 (520)
T ss_dssp CCCEEECC-CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEES-SCCGG---GGGGGTTSCEEEEEEEECT
T ss_pred ceeecCcc-ccCCccEEeccCCccccccchhhhccCCcceEEEecCc-ccchh---hccccccceeeEEEeeccc
Confidence 99888554 89999999999998876 5788999999999999998 66652 36777777 999998864
No 89
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.47 E-value=2.4e-14 Score=161.79 Aligned_cols=160 Identities=18% Similarity=0.164 Sum_probs=97.6
Q ss_pred CceEEeccCCCCCcCCCcc-CCCCCceEEEecCCC--CCCccchHHhcCCCCCcEEEccCCCCCCCccccccCCCcceEE
Q 047163 478 GPIAISLPHRDIQELPERL-QCPNLQLFLFFGKGY--GPMQISDLFFEGTKELKDLSLTRIPFSSLPSSLGSLINLGTLC 554 (658)
Q Consensus 478 ~~~~l~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~ 554 (658)
+++++.+..+.+...+... ...+|+.+.+.+... ....++...+..++.|+.|+|++|.+..+|..++.+++|++|+
T Consensus 174 ~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~ 253 (727)
T 4b8c_D 174 LTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLY 253 (727)
T ss_dssp ------------------------------------------------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCB
T ss_pred ccceEEeeCCCCCcchhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEE
Confidence 5777778777766554332 333344433332110 0112455567888899999999999988888888899999999
Q ss_pred ccCCCCCCc-hhhhccCCCcEEEccCccCCccchhhcCCCCCcEEcccCcccccccChhhhcCCCCCcEEEcccCCCCcc
Q 047163 555 LEDCPRNDI-AILRQLKKLEILRLRHSYTERLPLEIGQLTRLRLLDLSNCWRLKVIAPNVISKLSRLEELYMGNSFPKWD 633 (658)
Q Consensus 555 L~~~~~~~l-~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~~~~ 633 (658)
|++|.+..+ ..++.|++|++|+|++|.+..+|..+++|++|++|+|++| .++.+|.. |+++++|++|++++|.
T Consensus 254 Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N-~l~~lp~~-~~~l~~L~~L~L~~N~---- 327 (727)
T 4b8c_D 254 LNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDN-MVTTLPWE-FGNLCNLQFLGVEGNP---- 327 (727)
T ss_dssp CTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSS-CCCCCCSS-TTSCTTCCCEECTTSC----
T ss_pred eeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCC-CCCccChh-hhcCCCccEEeCCCCc----
Confidence 999988877 6788899999999999988888988899999999999998 78888876 8889999999998854
Q ss_pred cccCCCccchh
Q 047163 634 KVEGGSNASLA 644 (658)
Q Consensus 634 ~~~~~~~~~l~ 644 (658)
+++..|..+.
T Consensus 328 -l~~~~p~~~~ 337 (727)
T 4b8c_D 328 -LEKQFLKILT 337 (727)
T ss_dssp -CCSHHHHHHH
T ss_pred -cCCCChHHHh
Confidence 5555555443
No 90
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.47 E-value=2.3e-13 Score=153.86 Aligned_cols=175 Identities=20% Similarity=0.281 Sum_probs=122.7
Q ss_pred CceEEeccCCCCCcCCCc--cCCCCCceEEEecCCCCCCccchHHhcCCCCCcEEEccCCCCCCCcc-ccccCCCcceEE
Q 047163 478 GPIAISLPHRDIQELPER--LQCPNLQLFLFFGKGYGPMQISDLFFEGTKELKDLSLTRIPFSSLPS-SLGSLINLGTLC 554 (658)
Q Consensus 478 ~~~~l~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~ 554 (658)
+++.+.+.+|.+..++.. ..+++|+.|.+.+|........+..+..+++|++|++++|.+..+|+ .+..+++|++|+
T Consensus 431 ~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~ 510 (680)
T 1ziw_A 431 NIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILD 510 (680)
T ss_dssp TCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEe
Confidence 344455555444333221 14555666666555432212222336777888888888888887754 477788888888
Q ss_pred ccCCCCCCc----------hhhhccCCCcEEEccCccCCccch-hhcCCCCCcEEcccCcccccccChhhhcCCCCCcEE
Q 047163 555 LEDCPRNDI----------AILRQLKKLEILRLRHSYTERLPL-EIGQLTRLRLLDLSNCWRLKVIAPNVISKLSRLEEL 623 (658)
Q Consensus 555 L~~~~~~~l----------~~~~~l~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L 623 (658)
+++|.+..+ ..+..+++|++|++++|.+..+|. .+.++++|+.|++++| .++.+|+..+.++++|+.|
T Consensus 511 Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L 589 (680)
T 1ziw_A 511 LQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLN-NLNTLPASVFNNQVSLKSL 589 (680)
T ss_dssp CCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEE
T ss_pred CCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCC-CCCcCCHhHhCCCCCCCEE
Confidence 888877654 126778888888888888888875 4788888888888888 7888888777888888888
Q ss_pred EcccCCCCcccccCCCccchh-hcCCCCccccCCCC
Q 047163 624 YMGNSFPKWDKVEGGSNASLA-ELKGLSKLDTGHNR 658 (658)
Q Consensus 624 ~l~~~~~~~~~~~~~~~~~l~-~l~~L~~L~l~~N~ 658 (658)
++++| .+++..|..+. .+++|+.|++++|.
T Consensus 590 ~L~~N-----~l~~~~~~~~~~~~~~L~~l~l~~N~ 620 (680)
T 1ziw_A 590 NLQKN-----LITSVEKKVFGPAFRNLTELDMRFNP 620 (680)
T ss_dssp ECTTS-----CCCBCCHHHHHHHHTTCSEEECTTCC
T ss_pred ECCCC-----cCCccChhHhcccccccCEEEccCCC
Confidence 88884 47766676676 78888888888874
No 91
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.47 E-value=8.1e-14 Score=141.93 Aligned_cols=168 Identities=14% Similarity=0.085 Sum_probs=139.4
Q ss_pred CceEEeccCCCCCcCCCccCCCCCceEEEecCCCCCCccchHHhcCCCCCcEEEccCCCCCCC-cccc-ccCCCcceEEc
Q 047163 478 GPIAISLPHRDIQELPERLQCPNLQLFLFFGKGYGPMQISDLFFEGTKELKDLSLTRIPFSSL-PSSL-GSLINLGTLCL 555 (658)
Q Consensus 478 ~~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l-p~~i-~~l~~L~~L~L 555 (658)
+++.+.+.+|.+..++.. .+++|+.|.+++|. ...+++..+..+++|++|++++|.+..+ |..+ ..+++|++|++
T Consensus 100 ~L~~L~l~~n~l~~~~~~-~~~~L~~L~l~~N~--l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L 176 (317)
T 3o53_A 100 SIETLHAANNNISRVSCS-RGQGKKNIYLANNK--ITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNL 176 (317)
T ss_dssp TCCEEECCSSCCSEEEEC-CCSSCEEEECCSSC--CCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEEC
T ss_pred CcCEEECCCCccCCcCcc-ccCCCCEEECCCCC--CCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEEC
Confidence 788999999988776543 47889999999986 4445555577889999999999999865 4444 46899999999
Q ss_pred cCCCCCCchhhhccCCCcEEEccCccCCccchhhcCCCCCcEEcccCcccccccChhhhcCCCCCcEEEcccCCCCcccc
Q 047163 556 EDCPRNDIAILRQLKKLEILRLRHSYTERLPLEIGQLTRLRLLDLSNCWRLKVIAPNVISKLSRLEELYMGNSFPKWDKV 635 (658)
Q Consensus 556 ~~~~~~~l~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~~~~~~ 635 (658)
++|.+..++....+++|++|++++|.+..+|..+..+++|++|++++| .++.+|.. +..+++|+.|++++|. +
T Consensus 177 ~~N~l~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N-~l~~l~~~-~~~l~~L~~L~l~~N~-----~ 249 (317)
T 3o53_A 177 QYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNN-KLVLIEKA-LRFSQNLEHFDLRGNG-----F 249 (317)
T ss_dssp TTSCCCEEECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTS-CCCEECTT-CCCCTTCCEEECTTCC-----C
T ss_pred CCCcCcccccccccccCCEEECCCCcCCcchhhhcccCcccEEECcCC-cccchhhH-hhcCCCCCEEEccCCC-----c
Confidence 999998886666799999999999999999888999999999999999 88888876 7899999999999864 5
Q ss_pred c-CCCccchhhcCCCCccccC
Q 047163 636 E-GGSNASLAELKGLSKLDTG 655 (658)
Q Consensus 636 ~-~~~~~~l~~l~~L~~L~l~ 655 (658)
. +..|..+..+++|+.|++.
T Consensus 250 ~~~~~~~~~~~~~~L~~l~l~ 270 (317)
T 3o53_A 250 HCGTLRDFFSKNQRVQTVAKQ 270 (317)
T ss_dssp BHHHHHHHHHTCHHHHHHHHH
T ss_pred cCcCHHHHHhccccceEEECC
Confidence 5 5667788888888887765
No 92
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.47 E-value=1.8e-13 Score=152.53 Aligned_cols=173 Identities=20% Similarity=0.188 Sum_probs=130.0
Q ss_pred CceEEeccCCCCCcCCC-cc-CCCCCceEEEecCCCCCCccchHHhcCCCCCcEEEccCCCCCCC-ccccccCCCcceEE
Q 047163 478 GPIAISLPHRDIQELPE-RL-QCPNLQLFLFFGKGYGPMQISDLFFEGTKELKDLSLTRIPFSSL-PSSLGSLINLGTLC 554 (658)
Q Consensus 478 ~~~~l~l~~~~~~~~~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~ 554 (658)
+++.+.+.+|.+..+++ .+ .+++|+.|.+.+|.... ..+...+..+++|++|++++|.+... |..+..+++|++|+
T Consensus 377 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 455 (606)
T 3t6q_A 377 HLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKV-KDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLN 455 (606)
T ss_dssp TCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEEC-CTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEE
T ss_pred CCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCC-cccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEE
Confidence 67777777776655433 22 57777788777775322 22333467778888888888887754 56677888888888
Q ss_pred ccCCCCCCc-----hhhhccCCCcEEEccCccCCcc-chhhcCCCCCcEEcccCcccccccChhhhcCCCCCcEEEcccC
Q 047163 555 LEDCPRNDI-----AILRQLKKLEILRLRHSYTERL-PLEIGQLTRLRLLDLSNCWRLKVIAPNVISKLSRLEELYMGNS 628 (658)
Q Consensus 555 L~~~~~~~l-----~~~~~l~~L~~L~l~~~~~~~l-p~~~~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~ 628 (658)
+++|.+... ..+..+++|++|++++|.+..+ |..++++++|++|++++| .++..++..+.++++| .|++++|
T Consensus 456 L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~l~~l~~L-~L~L~~N 533 (606)
T 3t6q_A 456 LQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHN-RLTSSSIEALSHLKGI-YLNLASN 533 (606)
T ss_dssp CTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCGGGGGGGTTCCSC-EEECCSS
T ss_pred CCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCC-ccCcCChhHhCccccc-EEECcCC
Confidence 888877642 4578888888888888887777 567888888888888888 7887777778888888 8888884
Q ss_pred CCCcccccCCCccchhhcCCCCccccCCCC
Q 047163 629 FPKWDKVEGGSNASLAELKGLSKLDTGHNR 658 (658)
Q Consensus 629 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~N~ 658 (658)
.+++..|..+..+++|+.|++++|.
T Consensus 534 -----~l~~~~~~~~~~l~~L~~L~l~~N~ 558 (606)
T 3t6q_A 534 -----HISIILPSLLPILSQQRTINLRQNP 558 (606)
T ss_dssp -----CCCCCCGGGHHHHHTSSEEECTTCC
T ss_pred -----cccccCHhhcccCCCCCEEeCCCCC
Confidence 4777778888899999999998884
No 93
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.47 E-value=1.9e-13 Score=153.18 Aligned_cols=153 Identities=21% Similarity=0.276 Sum_probs=77.8
Q ss_pred CCCcCCCccCCCCCceEEEecCCCCCCccchHHhcCCCCCcEEEccCCCCCCCcc-ccccCCCcceEEccCCCCCCc--h
Q 047163 488 DIQELPERLQCPNLQLFLFFGKGYGPMQISDLFFEGTKELKDLSLTRIPFSSLPS-SLGSLINLGTLCLEDCPRNDI--A 564 (658)
Q Consensus 488 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~L~~~~~~~l--~ 564 (658)
+++.+|..+. ++++.|++++|. ...+++..|.++++|++|+|++|.+..+|+ .|.++++|++|+|++|++..+ .
T Consensus 42 ~l~~vP~~lp-~~~~~LdLs~N~--i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~ 118 (635)
T 4g8a_A 42 NFYKIPDNLP-FSTKNLDLSFNP--LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALG 118 (635)
T ss_dssp CCSSCCSSSC-TTCCEEECTTSC--CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGG
T ss_pred CcCccCCCCC-cCCCEEEeeCCC--CCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHH
Confidence 3444444321 345555555553 334444445555555555555555555433 355555555555555555554 2
Q ss_pred hhhccCCCcEEEccCccCCccch-hhcCCCCCcEEcccCcccccccC-hhhhcCCCCCcEEEcccCCCCcccccCCCccc
Q 047163 565 ILRQLKKLEILRLRHSYTERLPL-EIGQLTRLRLLDLSNCWRLKVIA-PNVISKLSRLEELYMGNSFPKWDKVEGGSNAS 642 (658)
Q Consensus 565 ~~~~l~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~~~~l~~~~-~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 642 (658)
.|.++++|++|++++|.+..+|. .++++++|++|++++| .++.++ +..++.+++|++|++++|. +++..+..
T Consensus 119 ~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~L~~N~-----l~~~~~~~ 192 (635)
T 4g8a_A 119 AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSNK-----IQSIYCTD 192 (635)
T ss_dssp GGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSS-CCCCCCCCGGGGGCTTCCEEECCSSC-----CCEECGGG
T ss_pred HhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccC-ccccCCCchhhccchhhhhhcccCcc-----cccccccc
Confidence 35555555555555555555543 3555555555555555 444332 2334555555555555532 44444444
Q ss_pred hhhcCCC
Q 047163 643 LAELKGL 649 (658)
Q Consensus 643 l~~l~~L 649 (658)
+..+.++
T Consensus 193 l~~L~~l 199 (635)
T 4g8a_A 193 LRVLHQM 199 (635)
T ss_dssp GHHHHTC
T ss_pred ccchhhh
Confidence 4444433
No 94
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.47 E-value=2.8e-13 Score=151.12 Aligned_cols=175 Identities=19% Similarity=0.273 Sum_probs=87.7
Q ss_pred CceEEeccCCCCCcCCCcc-CCCCCceEEEecCCCC-----------------------CCccchHHhcCCCCCcEEEcc
Q 047163 478 GPIAISLPHRDIQELPERL-QCPNLQLFLFFGKGYG-----------------------PMQISDLFFEGTKELKDLSLT 533 (658)
Q Consensus 478 ~~~~l~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~-----------------------~~~~~~~~~~~~~~L~~L~l~ 533 (658)
+++.+.+.+|.+..+|..+ .+++|+.|.+.+|... ...++...+..+++|++|+++
T Consensus 279 ~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~ 358 (606)
T 3t6q_A 279 GLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLS 358 (606)
T ss_dssp TCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECC
T ss_pred CCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECC
Confidence 4555555555555555433 4555555555555311 112222233444444555555
Q ss_pred CCCCCCC---ccccccCCCcceEEccCCCCCCc--hhhhccCCCcEEEccCccCCcc-c-hhhcCCCCCcEEcccCcccc
Q 047163 534 RIPFSSL---PSSLGSLINLGTLCLEDCPRNDI--AILRQLKKLEILRLRHSYTERL-P-LEIGQLTRLRLLDLSNCWRL 606 (658)
Q Consensus 534 ~~~~~~l---p~~i~~l~~L~~L~L~~~~~~~l--~~~~~l~~L~~L~l~~~~~~~l-p-~~~~~l~~L~~L~l~~~~~l 606 (658)
+|.+... |..+..+++|++|++++|.+..+ ..+..+++|++|++++|.+... | ..+.++++|+.|++++| .+
T Consensus 359 ~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n-~l 437 (606)
T 3t6q_A 359 HDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHS-LL 437 (606)
T ss_dssp SSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTC-CC
T ss_pred CCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCC-cc
Confidence 4444432 33444555555555555554433 3445555555555555544433 2 22555555666666555 45
Q ss_pred cccChhhhcCCCCCcEEEcccCCCCcccccC---CCccchhhcCCCCccccCCCC
Q 047163 607 KVIAPNVISKLSRLEELYMGNSFPKWDKVEG---GSNASLAELKGLSKLDTGHNR 658 (658)
Q Consensus 607 ~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~---~~~~~l~~l~~L~~L~l~~N~ 658 (658)
...++..++.+++|++|++++|. +.+ ..+..+..+++|+.|++++|+
T Consensus 438 ~~~~~~~~~~l~~L~~L~L~~n~-----l~~~~~~~~~~~~~l~~L~~L~Ls~n~ 487 (606)
T 3t6q_A 438 DISSEQLFDGLPALQHLNLQGNH-----FPKGNIQKTNSLQTLGRLEILVLSFCD 487 (606)
T ss_dssp BTTCTTTTTTCTTCCEEECTTCB-----CGGGEECSSCGGGGCTTCCEEECTTSC
T ss_pred CCcCHHHHhCCCCCCEEECCCCC-----CCccccccchhhccCCCccEEECCCCc
Confidence 55555445556666666666532 333 223456666666666666663
No 95
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.47 E-value=3.2e-13 Score=147.18 Aligned_cols=154 Identities=15% Similarity=0.161 Sum_probs=117.0
Q ss_pred CceEEeccCCCCCcCCCccCCCCCceEEEecCCCCCCccchHHhcCCCCCcEEEccCCCCCCCccccccCCCcceEEccC
Q 047163 478 GPIAISLPHRDIQELPERLQCPNLQLFLFFGKGYGPMQISDLFFEGTKELKDLSLTRIPFSSLPSSLGSLINLGTLCLED 557 (658)
Q Consensus 478 ~~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~L~~ 557 (658)
+++.|.+++|.+..+| ..+++|+.|++++|.+ ..+|. +.+ +|++|++++|.+..+|. .+++|++|+|++
T Consensus 81 ~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l--~~ip~--l~~--~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~ 149 (571)
T 3cvr_A 81 QITVLEITQNALISLP--ELPASLEYLDACDNRL--STLPE--LPA--SLKHLDVDNNQLTMLPE---LPALLEYINADN 149 (571)
T ss_dssp TCSEEECCSSCCSCCC--CCCTTCCEEECCSSCC--SCCCC--CCT--TCCEEECCSSCCSCCCC---CCTTCCEEECCS
T ss_pred CCCEEECcCCCCcccc--cccCCCCEEEccCCCC--CCcch--hhc--CCCEEECCCCcCCCCCC---cCccccEEeCCC
Confidence 6888888888888877 4578888888888863 33555 333 88888888888888877 578888888888
Q ss_pred CCCCCchhhhccCCCcEEEccCccCCccchhhcCCCCCcEEcccCcccccccChhhhcCCCCC-------cEEEcccCCC
Q 047163 558 CPRNDIAILRQLKKLEILRLRHSYTERLPLEIGQLTRLRLLDLSNCWRLKVIAPNVISKLSRL-------EELYMGNSFP 630 (658)
Q Consensus 558 ~~~~~l~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L-------~~L~l~~~~~ 630 (658)
|.+..++. .+++|++|++++|.+..+|. +. ++|++|++++| .++.+|. +.. +| +.|++++|.
T Consensus 150 N~l~~lp~--~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N-~L~~lp~--~~~--~L~~~~~~L~~L~Ls~N~- 218 (571)
T 3cvr_A 150 NQLTMLPE--LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTN-LLESLPA--VPV--RNHHSEETEIFFRCRENR- 218 (571)
T ss_dssp SCCSCCCC--CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSS-CCSSCCC--CC----------CCEEEECCSSC-
T ss_pred CccCcCCC--cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCC-CCCchhh--HHH--hhhcccccceEEecCCCc-
Confidence 88877754 56788888888888888887 55 78888888888 7887776 433 56 888888853
Q ss_pred CcccccCCCccchhhcCCCCccccCCCC
Q 047163 631 KWDKVEGGSNASLAELKGLSKLDTGHNR 658 (658)
Q Consensus 631 ~~~~~~~~~~~~l~~l~~L~~L~l~~N~ 658 (658)
++ .+|..+..+++|+.|++++|+
T Consensus 219 ----l~-~lp~~l~~l~~L~~L~L~~N~ 241 (571)
T 3cvr_A 219 ----IT-HIPENILSLDPTCTIILEDNP 241 (571)
T ss_dssp ----CC-CCCGGGGGSCTTEEEECCSSS
T ss_pred ----ce-ecCHHHhcCCCCCEEEeeCCc
Confidence 54 567777788888888888874
No 96
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.46 E-value=2.7e-13 Score=156.83 Aligned_cols=169 Identities=18% Similarity=0.137 Sum_probs=142.9
Q ss_pred eEEeccCCCCCcCCCccCCCCCceEEEecCCCCCCccchHHhcCCCCCcEEEccCCCCC-CC-ccccccCCCcceEEccC
Q 047163 480 IAISLPHRDIQELPERLQCPNLQLFLFFGKGYGPMQISDLFFEGTKELKDLSLTRIPFS-SL-PSSLGSLINLGTLCLED 557 (658)
Q Consensus 480 ~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~l-p~~i~~l~~L~~L~L~~ 557 (658)
+.+..+++.++.+|. ..++++.|++++|. ...+++..|.++++|++|++++|... .+ |..+.++++|++|+|++
T Consensus 7 ~~~dcs~~~L~~vP~--lp~~l~~LdLs~N~--i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~ 82 (844)
T 3j0a_A 7 RIAFYRFCNLTQVPQ--VLNTTERLLLSFNY--IRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGS 82 (844)
T ss_dssp EEEEESCCCSSCCCS--SCTTCCEEEEESCC--CCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTT
T ss_pred eEEEccCCCCCCCCC--CCCCcCEEECCCCc--CCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCC
Confidence 345566778888888 66899999999997 44455555899999999999999544 55 77899999999999999
Q ss_pred CCCCCc--hhhhccCCCcEEEccCccCCc-cchh--hcCCCCCcEEcccCcccccccCh-hhhcCCCCCcEEEcccCCCC
Q 047163 558 CPRNDI--AILRQLKKLEILRLRHSYTER-LPLE--IGQLTRLRLLDLSNCWRLKVIAP-NVISKLSRLEELYMGNSFPK 631 (658)
Q Consensus 558 ~~~~~l--~~~~~l~~L~~L~l~~~~~~~-lp~~--~~~l~~L~~L~l~~~~~l~~~~~-~~i~~l~~L~~L~l~~~~~~ 631 (658)
|.+..+ ..++++++|++|+|++|.+.. +|.. ++++++|++|++++| .++.+++ ..++++++|++|++++|
T Consensus 83 N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N-~l~~~~~~~~~~~L~~L~~L~Ls~N--- 158 (844)
T 3j0a_A 83 SKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKN-QIRSLYLHPSFGKLNSLKSIDFSSN--- 158 (844)
T ss_dssp CCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESC-CCCCCCCCGGGGTCSSCCEEEEESS---
T ss_pred CcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCC-cccccccchhHhhCCCCCEEECCCC---
Confidence 999887 689999999999999998875 5654 899999999999999 7777653 45899999999999995
Q ss_pred cccccCCCccchhhc--CCCCccccCCCC
Q 047163 632 WDKVEGGSNASLAEL--KGLSKLDTGHNR 658 (658)
Q Consensus 632 ~~~~~~~~~~~l~~l--~~L~~L~l~~N~ 658 (658)
.+++..+..+..+ ++|+.|++++|+
T Consensus 159 --~i~~~~~~~l~~l~~~~L~~L~L~~n~ 185 (844)
T 3j0a_A 159 --QIFLVCEHELEPLQGKTLSFFSLAANS 185 (844)
T ss_dssp --CCCCCCSGGGHHHHHCSSCCCEECCSB
T ss_pred --cCCeeCHHHcccccCCccceEECCCCc
Confidence 4777788888888 899999999874
No 97
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.45 E-value=4.9e-14 Score=152.16 Aligned_cols=167 Identities=14% Similarity=0.078 Sum_probs=142.1
Q ss_pred CceEEeccCCCCCcCCCccCCCCCceEEEecCCCCCCccchHHhcCCCCCcEEEccCCCCCC-Cccccc-cCCCcceEEc
Q 047163 478 GPIAISLPHRDIQELPERLQCPNLQLFLFFGKGYGPMQISDLFFEGTKELKDLSLTRIPFSS-LPSSLG-SLINLGTLCL 555 (658)
Q Consensus 478 ~~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-lp~~i~-~l~~L~~L~L 555 (658)
+++.+.+.+|.+..++.. .+++|+.|.+++|. ...+++..+..+++|++|++++|.+.. .|..+. .+++|++|+|
T Consensus 100 ~L~~L~L~~N~l~~~~~~-~l~~L~~L~L~~N~--l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~L 176 (487)
T 3oja_A 100 SIETLHAANNNISRVSCS-RGQGKKNIYLANNK--ITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNL 176 (487)
T ss_dssp TCCEEECCSSCCCCEEEC-CCSSCEEEECCSSC--CCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEEC
T ss_pred CcCEEECcCCcCCCCCcc-ccCCCCEEECCCCC--CCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEec
Confidence 799999999999877653 57899999999997 344555557889999999999999996 466665 7999999999
Q ss_pred cCCCCCCchhhhccCCCcEEEccCccCCccchhhcCCCCCcEEcccCcccccccChhhhcCCCCCcEEEcccCCCCcccc
Q 047163 556 EDCPRNDIAILRQLKKLEILRLRHSYTERLPLEIGQLTRLRLLDLSNCWRLKVIAPNVISKLSRLEELYMGNSFPKWDKV 635 (658)
Q Consensus 556 ~~~~~~~l~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~~~~~~ 635 (658)
++|.+..++....+++|++|+|++|.+..+|+.++.+++|+.|++++| .++.+|+. ++.+++|+.|++++|. +
T Consensus 177 s~N~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~-l~~l~~L~~L~l~~N~-----l 249 (487)
T 3oja_A 177 QYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNN-KLVLIEKA-LRFSQNLEHFDLRGNG-----F 249 (487)
T ss_dssp TTSCCCEEECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTS-CCCEECTT-CCCCTTCCEEECTTCC-----B
T ss_pred CCCccccccccccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCC-cCcccchh-hccCCCCCEEEcCCCC-----C
Confidence 999999887777899999999999999999988999999999999999 89998877 8899999999999965 4
Q ss_pred c-CCCccchhhcCCCCcccc
Q 047163 636 E-GGSNASLAELKGLSKLDT 654 (658)
Q Consensus 636 ~-~~~~~~l~~l~~L~~L~l 654 (658)
. +..|..+..++.|+.|++
T Consensus 250 ~c~~~~~~~~~l~~L~~l~~ 269 (487)
T 3oja_A 250 HCGTLRDFFSKNQRVQTVAK 269 (487)
T ss_dssp CHHHHHHHHTTCHHHHHHHH
T ss_pred cCcchHHHHHhCCCCcEEec
Confidence 4 455666777777766655
No 98
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.45 E-value=3.3e-13 Score=149.28 Aligned_cols=170 Identities=21% Similarity=0.253 Sum_probs=142.2
Q ss_pred eEEeccCCCCCcCCCccCCCCCceEEEecCCCCCCccchHHhcCCCCCcEEEccCCCCCCCc-cccccCCCcceEEccCC
Q 047163 480 IAISLPHRDIQELPERLQCPNLQLFLFFGKGYGPMQISDLFFEGTKELKDLSLTRIPFSSLP-SSLGSLINLGTLCLEDC 558 (658)
Q Consensus 480 ~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp-~~i~~l~~L~~L~L~~~ 558 (658)
+.+...+..+..+|... .++++.|++++|. ...++...|.++++|++|++++|.+..+| ..+..+++|++|+|++|
T Consensus 10 ~~~~c~~~~l~~ip~~l-~~~l~~L~Ls~n~--l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n 86 (570)
T 2z63_A 10 ITYQCMELNFYKIPDNL-PFSTKNLDLSFNP--LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 86 (570)
T ss_dssp TEEECCSSCCSSCCSSS-CSSCCEEECCSCC--CCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred cEEEeCCCCccccCCCc-cccccEEEccCCc--cCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCC
Confidence 34555566677777644 3689999999996 45566666889999999999999999774 56889999999999999
Q ss_pred CCCCc--hhhhccCCCcEEEccCccCCccch-hhcCCCCCcEEcccCcccccccC-hhhhcCCCCCcEEEcccCCCCccc
Q 047163 559 PRNDI--AILRQLKKLEILRLRHSYTERLPL-EIGQLTRLRLLDLSNCWRLKVIA-PNVISKLSRLEELYMGNSFPKWDK 634 (658)
Q Consensus 559 ~~~~l--~~~~~l~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~~~~l~~~~-~~~i~~l~~L~~L~l~~~~~~~~~ 634 (658)
.+..+ ..++.+++|++|++++|.+..+|. .++++++|++|++++| .++.+. |..++++++|++|++++|.
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n-~l~~~~lp~~~~~l~~L~~L~l~~n~----- 160 (570)
T 2z63_A 87 PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSNK----- 160 (570)
T ss_dssp CCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSS-CCCCCCCCGGGGGCTTCCEEECTTSC-----
T ss_pred cCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCC-ccceecChhhhcccCCCCEEeCcCCc-----
Confidence 99887 579999999999999999999875 6899999999999999 777632 4448999999999999854
Q ss_pred ccCCCccchhhcCCC----CccccCCCC
Q 047163 635 VEGGSNASLAELKGL----SKLDTGHNR 658 (658)
Q Consensus 635 ~~~~~~~~l~~l~~L----~~L~l~~N~ 658 (658)
+++..|..+..+++| ..|++++|+
T Consensus 161 l~~~~~~~~~~l~~L~~~~~~L~l~~n~ 188 (570)
T 2z63_A 161 IQSIYCTDLRVLHQMPLLNLSLDLSLNP 188 (570)
T ss_dssp CCEECGGGGHHHHTCTTCCCEEECTTCC
T ss_pred cceecHHHccchhccchhhhhcccCCCC
Confidence 676778889999998 888988874
No 99
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.45 E-value=2.5e-13 Score=127.26 Aligned_cols=122 Identities=18% Similarity=0.241 Sum_probs=94.7
Q ss_pred ceEEEecCCCCCCccchHHhcCCCCCcEEEccCCCCCCCccc--cccCCCcceEEccCCCCCCc--hhhhccCCCcEEEc
Q 047163 502 QLFLFFGKGYGPMQISDLFFEGTKELKDLSLTRIPFSSLPSS--LGSLINLGTLCLEDCPRNDI--AILRQLKKLEILRL 577 (658)
Q Consensus 502 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~--i~~l~~L~~L~L~~~~~~~l--~~~~~l~~L~~L~l 577 (658)
++++++++. ...+|..+ ..+|++|++++|.+..+|.. +..+++|++|+|++|.+..+ ..+..+++|++|+|
T Consensus 11 ~~l~~s~~~--l~~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 85 (192)
T 1w8a_A 11 TTVDCTGRG--LKEIPRDI---PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQL 85 (192)
T ss_dssp TEEECTTSC--CSSCCSCC---CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CEEEcCCCC--cCcCccCC---CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEEC
Confidence 567777775 34566543 23788888888888877653 77888888888888888777 57888888888888
Q ss_pred cCccCCccch-hhcCCCCCcEEcccCcccccccChhhhcCCCCCcEEEcccCC
Q 047163 578 RHSYTERLPL-EIGQLTRLRLLDLSNCWRLKVIAPNVISKLSRLEELYMGNSF 629 (658)
Q Consensus 578 ~~~~~~~lp~-~~~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~ 629 (658)
++|.+..+|. .+.++++|++|++++| .++.+++..+..+++|++|++++|.
T Consensus 86 s~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 86 GENKIKEISNKMFLGLHQLKTLNLYDN-QISCVMPGSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp CSCCCCEECSSSSTTCTTCCEEECCSS-CCCEECTTSSTTCTTCCEEECTTCC
T ss_pred CCCcCCccCHHHhcCCCCCCEEECCCC-cCCeeCHHHhhcCCCCCEEEeCCCC
Confidence 8888887764 4778888888888888 7887777778888888888888854
No 100
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.44 E-value=2.4e-13 Score=125.54 Aligned_cols=132 Identities=15% Similarity=0.074 Sum_probs=92.3
Q ss_pred CCccCCCCCceEEEecCCCCCCccchHHhcCCCCCcEEEccCCCCCCCccccccCCCcceEEccCCCCCCc-hh-hhccC
Q 047163 493 PERLQCPNLQLFLFFGKGYGPMQISDLFFEGTKELKDLSLTRIPFSSLPSSLGSLINLGTLCLEDCPRNDI-AI-LRQLK 570 (658)
Q Consensus 493 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~l-~~-~~~l~ 570 (658)
+....+++|+.|.+.+|... .++. +....++|++|++++|.+..+ ..++.+++|++|++++|.+..+ +. +..++
T Consensus 13 ~~~~~~~~L~~L~l~~n~l~--~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 88 (176)
T 1a9n_A 13 AQYTNAVRDRELDLRGYKIP--VIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALP 88 (176)
T ss_dssp CEEECTTSCEEEECTTSCCC--SCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCT
T ss_pred HhcCCcCCceEEEeeCCCCc--hhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCC
Confidence 44456777888888877633 3433 233334788888888877766 5677777888888888877776 33 47777
Q ss_pred CCcEEEccCccCCccch--hhcCCCCCcEEcccCcccccccChh---hhcCCCCCcEEEcccCC
Q 047163 571 KLEILRLRHSYTERLPL--EIGQLTRLRLLDLSNCWRLKVIAPN---VISKLSRLEELYMGNSF 629 (658)
Q Consensus 571 ~L~~L~l~~~~~~~lp~--~~~~l~~L~~L~l~~~~~l~~~~~~---~i~~l~~L~~L~l~~~~ 629 (658)
+|++|++++|.+..+|. .+..+++|++|++++| .+..+|.. .++.+++|+.|++++|.
T Consensus 89 ~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N-~i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 89 DLTELILTNNSLVELGDLDPLASLKSLTYLCILRN-PVTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp TCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSS-GGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred CCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCC-CCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 88888888887777776 6777778888888887 66666653 46777778888777653
No 101
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.43 E-value=3.3e-13 Score=139.98 Aligned_cols=149 Identities=25% Similarity=0.319 Sum_probs=131.0
Q ss_pred CceEEeccCCCCCcCCCcc---CCCCCceEEEecCCCCCCccchHHhcCCCCCcEEEccCCCCCCCcc-ccccCCCcceE
Q 047163 478 GPIAISLPHRDIQELPERL---QCPNLQLFLFFGKGYGPMQISDLFFEGTKELKDLSLTRIPFSSLPS-SLGSLINLGTL 553 (658)
Q Consensus 478 ~~~~l~l~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L 553 (658)
.++.|.+++|.+..++... .+++|+.|++++|. ...++...|..+++|++|+|++|.+..+|. .+..+++|++|
T Consensus 40 ~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~--i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 117 (361)
T 2xot_A 40 YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNH--LNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVL 117 (361)
T ss_dssp TCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSC--CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred CCCEEECCCCCCCccChhhhhhcccccCEEECCCCc--CCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEE
Confidence 6889999999998877643 78999999999996 556776678999999999999999998765 58899999999
Q ss_pred EccCCCCCCc--hhhhccCCCcEEEccCccCCccchhh----cCCCCCcEEcccCcccccccChhhhcCCCC--CcEEEc
Q 047163 554 CLEDCPRNDI--AILRQLKKLEILRLRHSYTERLPLEI----GQLTRLRLLDLSNCWRLKVIAPNVISKLSR--LEELYM 625 (658)
Q Consensus 554 ~L~~~~~~~l--~~~~~l~~L~~L~l~~~~~~~lp~~~----~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~--L~~L~l 625 (658)
+|++|.+..+ ..+..+++|++|+|++|.+..+|..+ ..+++|++|++++| .++.+++..+..++. |+.|++
T Consensus 118 ~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~~~l~~l~l 196 (361)
T 2xot_A 118 LLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSN-KLKKLPLTDLQKLPAWVKNGLYL 196 (361)
T ss_dssp ECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSS-CCCCCCHHHHHHSCHHHHTTEEC
T ss_pred ECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCC-CCCccCHHHhhhccHhhcceEEe
Confidence 9999999887 67999999999999999999999765 67999999999999 899999888888887 489999
Q ss_pred ccCC
Q 047163 626 GNSF 629 (658)
Q Consensus 626 ~~~~ 629 (658)
++|.
T Consensus 197 ~~N~ 200 (361)
T 2xot_A 197 HNNP 200 (361)
T ss_dssp CSSC
T ss_pred cCCC
Confidence 9876
No 102
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.43 E-value=7.1e-13 Score=144.88 Aligned_cols=169 Identities=15% Similarity=0.127 Sum_probs=126.0
Q ss_pred CceEEeccCCCCCcCCCccCCCCCceEEEecCCCCCCccchHHhcCCCCCcEEEccCCCCCC---CccccccCCCcceEE
Q 047163 478 GPIAISLPHRDIQELPERLQCPNLQLFLFFGKGYGPMQISDLFFEGTKELKDLSLTRIPFSS---LPSSLGSLINLGTLC 554 (658)
Q Consensus 478 ~~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~---lp~~i~~l~~L~~L~ 554 (658)
+++.+.+.+|.+...+....+++|+.|++++|.... .++. .+..+++|++|++++|.+.. +|..++.+++|++|+
T Consensus 303 ~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~-~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~ 380 (520)
T 2z7x_B 303 NIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTD-TVFE-NCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLD 380 (520)
T ss_dssp CCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCT-TTTT-TCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEE
T ss_pred ceeEEEcCCCccccccchhhCCcccEEEeECCccCh-hhhh-hhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEE
Confidence 577888888777665543577888888888886322 2333 35778888888888888884 456678888888888
Q ss_pred ccCCCCCC-ch--hhhccCCCcEEEccCccCC-ccchhhcCCCCCcEEcccCcccccccChhhhcCCCCCcEEEcccCCC
Q 047163 555 LEDCPRND-IA--ILRQLKKLEILRLRHSYTE-RLPLEIGQLTRLRLLDLSNCWRLKVIAPNVISKLSRLEELYMGNSFP 630 (658)
Q Consensus 555 L~~~~~~~-l~--~~~~l~~L~~L~l~~~~~~-~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~ 630 (658)
+++|.+.. ++ .+..+++|++|++++|.+. .+|..+. ++|+.|++++| .++.+|.. +..+++|++|++++|.
T Consensus 381 Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N-~l~~ip~~-~~~l~~L~~L~L~~N~- 455 (520)
T 2z7x_B 381 ISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSN-KIKSIPKQ-VVKLEALQELNVASNQ- 455 (520)
T ss_dssp CCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSS-CCCCCCGG-GGGCTTCCEEECCSSC-
T ss_pred CCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCC-cccccchh-hhcCCCCCEEECCCCc-
Confidence 88888876 53 4677888888888888763 4454443 68889999888 78888876 5688899999998854
Q ss_pred CcccccCCCccc-hhhcCCCCccccCCCC
Q 047163 631 KWDKVEGGSNAS-LAELKGLSKLDTGHNR 658 (658)
Q Consensus 631 ~~~~~~~~~~~~-l~~l~~L~~L~l~~N~ 658 (658)
++ .+|.. +..+++|+.|++++|.
T Consensus 456 ----l~-~l~~~~~~~l~~L~~L~l~~N~ 479 (520)
T 2z7x_B 456 ----LK-SVPDGIFDRLTSLQKIWLHTNP 479 (520)
T ss_dssp ----CC-CCCTTTTTTCTTCCEEECCSSC
T ss_pred ----CC-ccCHHHhccCCcccEEECcCCC
Confidence 55 34544 8888899999988884
No 103
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.42 E-value=1.1e-13 Score=142.23 Aligned_cols=174 Identities=21% Similarity=0.188 Sum_probs=129.2
Q ss_pred CceEEeccCCCCCc--CCCc-cCCCCCceEEEecCCCCCCccchHHhcCCCCCcEEEccCC-CCC--CCccccccCCCcc
Q 047163 478 GPIAISLPHRDIQE--LPER-LQCPNLQLFLFFGKGYGPMQISDLFFEGTKELKDLSLTRI-PFS--SLPSSLGSLINLG 551 (658)
Q Consensus 478 ~~~~l~l~~~~~~~--~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~--~lp~~i~~l~~L~ 551 (658)
+++++.+.+|.+.. ++.. ..+++|+.|.+.+|. ........+..+++|++|++++| .+. .+|..+..+++|+
T Consensus 94 ~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~--l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~ 171 (336)
T 2ast_B 94 RVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLR--LSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLD 171 (336)
T ss_dssp CCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCB--CCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCC
T ss_pred CCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcc--cCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCC
Confidence 78888888887653 4433 378899999998885 22222234677899999999998 566 3677788889999
Q ss_pred eEEccCC-CCCC--c-hhhhccC-CCcEEEccCcc--C--CccchhhcCCCCCcEEcccCcccccccChhhhcCCCCCcE
Q 047163 552 TLCLEDC-PRND--I-AILRQLK-KLEILRLRHSY--T--ERLPLEIGQLTRLRLLDLSNCWRLKVIAPNVISKLSRLEE 622 (658)
Q Consensus 552 ~L~L~~~-~~~~--l-~~~~~l~-~L~~L~l~~~~--~--~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~ 622 (658)
+|++++| .+.. + ..+..++ +|++|++++|. + ..+|..+.++++|++|++++|..++...+..+.++++|++
T Consensus 172 ~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~ 251 (336)
T 2ast_B 172 ELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQH 251 (336)
T ss_dssp EEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCE
T ss_pred EEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCE
Confidence 9999998 7775 3 5678888 99999999984 3 5567778889999999999984355444445888899999
Q ss_pred EEcccCCCCcccccCCCccchhhcCCCCccccCCC
Q 047163 623 LYMGNSFPKWDKVEGGSNASLAELKGLSKLDTGHN 657 (658)
Q Consensus 623 L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~N 657 (658)
|++++|. .+.......+.++++|+.|++++|
T Consensus 252 L~l~~~~----~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 252 LSLSRCY----DIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp EECTTCT----TCCGGGGGGGGGCTTCCEEECTTS
T ss_pred eeCCCCC----CCCHHHHHHHhcCCCCCEEeccCc
Confidence 9998863 133333346788999999998876
No 104
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.42 E-value=5.6e-13 Score=122.05 Aligned_cols=127 Identities=24% Similarity=0.252 Sum_probs=68.2
Q ss_pred CCCcEEEccCCCCC--CCccccccCCCcceEEccCCCCCCchhhhccCCCcEEEccCccCCc-cchhhcCCCCCcEEccc
Q 047163 525 KELKDLSLTRIPFS--SLPSSLGSLINLGTLCLEDCPRNDIAILRQLKKLEILRLRHSYTER-LPLEIGQLTRLRLLDLS 601 (658)
Q Consensus 525 ~~L~~L~l~~~~~~--~lp~~i~~l~~L~~L~L~~~~~~~l~~~~~l~~L~~L~l~~~~~~~-lp~~~~~l~~L~~L~l~ 601 (658)
++|+.|++++|.+. .+|..+..+++|++|++++|.+..+..++.+++|++|++++|.+.. +|..+.++++|++|+++
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 103 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLS 103 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECB
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEecc
Confidence 45555555555555 4555555555555555555555555555555555555555555554 44444455555555555
Q ss_pred CcccccccCh-hhhcCCCCCcEEEcccCCCCcccccCCCc---cchhhcCCCCccccCCC
Q 047163 602 NCWRLKVIAP-NVISKLSRLEELYMGNSFPKWDKVEGGSN---ASLAELKGLSKLDTGHN 657 (658)
Q Consensus 602 ~~~~l~~~~~-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~---~~l~~l~~L~~L~l~~N 657 (658)
+| .++.++. ..++.+++|++|++++|. +++..+ ..+..+++|+.|++++|
T Consensus 104 ~N-~l~~~~~~~~l~~l~~L~~L~l~~N~-----l~~~~~~~~~~~~~l~~L~~L~l~~n 157 (168)
T 2ell_A 104 GN-KLKDISTLEPLKKLECLKSLDLFNCE-----VTNLNDYRESVFKLLPQLTYLDGYDR 157 (168)
T ss_dssp SS-SCCSSGGGGGGSSCSCCCEEECCSSG-----GGTSTTHHHHHHTTCSSCCEETTEET
T ss_pred CC-ccCcchhHHHHhcCCCCCEEEeeCCc-----CcchHHHHHHHHHhCccCcEecCCCC
Confidence 55 5555432 235555555555555532 333222 24555555555555554
No 105
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.42 E-value=1.9e-12 Score=138.48 Aligned_cols=157 Identities=12% Similarity=0.090 Sum_probs=94.8
Q ss_pred CceEEeccCCCCCcCCCccCCCCCceEEEecCCCCCCccchHHhcCCCCCcEEEccCCCCCCCccccccCCCcceEEccC
Q 047163 478 GPIAISLPHRDIQELPERLQCPNLQLFLFFGKGYGPMQISDLFFEGTKELKDLSLTRIPFSSLPSSLGSLINLGTLCLED 557 (658)
Q Consensus 478 ~~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~L~~ 557 (658)
+++.+.+.+|.+..++ ...+++|+.|++++|... .++ +..+++|++|++++|.+..+| ++.+++|++|++++
T Consensus 86 ~L~~L~Ls~N~l~~~~-~~~l~~L~~L~L~~N~l~--~l~---~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~ 157 (457)
T 3bz5_A 86 NLTYLACDSNKLTNLD-VTPLTKLTYLNCDTNKLT--KLD---VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHL 157 (457)
T ss_dssp TCSEEECCSSCCSCCC-CTTCTTCCEEECCSSCCS--CCC---CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTT
T ss_pred CCCEEECcCCCCceee-cCCCCcCCEEECCCCcCC--eec---CCCCCcCCEEECCCCccceec--cccCCcCCEEECCC
Confidence 6788888888877765 457788888888887633 233 567778888888888777664 55666666666666
Q ss_pred CC-CCCchhhhccCCCcEEEccCccCCccchhhcCCCCCcEEcccCcccccccChhhhcCCCCCcEEEcccCCCCccccc
Q 047163 558 CP-RNDIAILRQLKKLEILRLRHSYTERLPLEIGQLTRLRLLDLSNCWRLKVIAPNVISKLSRLEELYMGNSFPKWDKVE 636 (658)
Q Consensus 558 ~~-~~~l~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~ 636 (658)
|. +..+ .++.+++|++|++++|.+..+| ++.+++|+.|++++| .++.++ ++.+++|+.|++++|. ++
T Consensus 158 n~~~~~~-~~~~l~~L~~L~ls~n~l~~l~--l~~l~~L~~L~l~~N-~l~~~~---l~~l~~L~~L~Ls~N~-----l~ 225 (457)
T 3bz5_A 158 NKKITKL-DVTPQTQLTTLDCSFNKITELD--VSQNKLLNRLNCDTN-NITKLD---LNQNIQLTFLDCSSNK-----LT 225 (457)
T ss_dssp CSCCCCC-CCTTCTTCCEEECCSSCCCCCC--CTTCTTCCEEECCSS-CCSCCC---CTTCTTCSEEECCSSC-----CS
T ss_pred CCccccc-ccccCCcCCEEECCCCccceec--cccCCCCCEEECcCC-cCCeec---cccCCCCCEEECcCCc-----cc
Confidence 63 3333 4555566666666666655555 455555555555555 454442 4455555555555532 33
Q ss_pred CCCccchhhcCCCCccccCCC
Q 047163 637 GGSNASLAELKGLSKLDTGHN 657 (658)
Q Consensus 637 ~~~~~~l~~l~~L~~L~l~~N 657 (658)
+ +| +..+++|+.|++++|
T Consensus 226 ~-ip--~~~l~~L~~L~l~~N 243 (457)
T 3bz5_A 226 E-ID--VTPLTQLTYFDCSVN 243 (457)
T ss_dssp C-CC--CTTCTTCSEEECCSS
T ss_pred c-cC--ccccCCCCEEEeeCC
Confidence 2 23 444445555554444
No 106
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.41 E-value=1.5e-13 Score=141.17 Aligned_cols=174 Identities=18% Similarity=0.247 Sum_probs=77.4
Q ss_pred CceEEeccCCCCCcCC-CccCCCCCceEEEecCCCCCCccchHHhcCCCCCcEEEccCCCCC-CCccccccCCCcceEEc
Q 047163 478 GPIAISLPHRDIQELP-ERLQCPNLQLFLFFGKGYGPMQISDLFFEGTKELKDLSLTRIPFS-SLPSSLGSLINLGTLCL 555 (658)
Q Consensus 478 ~~~~l~l~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~lp~~i~~l~~L~~L~L 555 (658)
.++.+.+.++.+...+ ....+++|+.|++++|......++ ..+..+++|++|++++|.+. ..|..++.+++|++|++
T Consensus 71 ~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~-~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L 149 (336)
T 2ast_B 71 GVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLH-GILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL 149 (336)
T ss_dssp TCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHH-HHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred cceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHH-HHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC
Confidence 3444445444443322 222445555555555431111111 22444555555555555544 23444445555555555
Q ss_pred cCC-CCCC--c-hhhhccCCCcEEEccCc-cCCc--cchhhcCCC-CCcEEcccCcc-cc--cccChhhhcCCCCCcEEE
Q 047163 556 EDC-PRND--I-AILRQLKKLEILRLRHS-YTER--LPLEIGQLT-RLRLLDLSNCW-RL--KVIAPNVISKLSRLEELY 624 (658)
Q Consensus 556 ~~~-~~~~--l-~~~~~l~~L~~L~l~~~-~~~~--lp~~~~~l~-~L~~L~l~~~~-~l--~~~~~~~i~~l~~L~~L~ 624 (658)
++| .+.. + ..+..+++|++|++++| .+.. +|..+.+++ +|++|++++|. .+ ..++. .+.++++|++|+
T Consensus 150 ~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~-~~~~~~~L~~L~ 228 (336)
T 2ast_B 150 SGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLST-LVRRCPNLVHLD 228 (336)
T ss_dssp TTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHH-HHHHCTTCSEEE
T ss_pred CCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHH-HHhhCCCCCEEe
Confidence 555 3432 2 23444555555555555 4443 344445555 55555555552 11 11222 244455555555
Q ss_pred cccCCCCcccccCCCccchhhcCCCCccccCCC
Q 047163 625 MGNSFPKWDKVEGGSNASLAELKGLSKLDTGHN 657 (658)
Q Consensus 625 l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~N 657 (658)
+++|. .+++..+..+.++++|+.|++++|
T Consensus 229 l~~~~----~l~~~~~~~l~~l~~L~~L~l~~~ 257 (336)
T 2ast_B 229 LSDSV----MLKNDCFQEFFQLNYLQHLSLSRC 257 (336)
T ss_dssp CTTCT----TCCGGGGGGGGGCTTCCEEECTTC
T ss_pred CCCCC----cCCHHHHHHHhCCCCCCEeeCCCC
Confidence 55432 123333444555555555555544
No 107
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.41 E-value=6.5e-13 Score=146.59 Aligned_cols=144 Identities=19% Similarity=0.219 Sum_probs=121.5
Q ss_pred CceEEeccCCCCCcCCCccCCCCCceEEEecCCCCCCccchHHhcCCCCCcEEEccCCCCCCC-ccccccCCCcceEEcc
Q 047163 478 GPIAISLPHRDIQELPERLQCPNLQLFLFFGKGYGPMQISDLFFEGTKELKDLSLTRIPFSSL-PSSLGSLINLGTLCLE 556 (658)
Q Consensus 478 ~~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~L~ 556 (658)
..+++.++++.++.+|.... ++++.|++++|. ...+++..|.++++|++|++++|.+..+ |..+..+++|++|+|+
T Consensus 32 ~~~~l~ls~~~L~~ip~~~~-~~L~~L~Ls~N~--i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 108 (562)
T 3a79_B 32 LESMVDYSNRNLTHVPKDLP-PRTKALSLSQNS--ISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVS 108 (562)
T ss_dssp -CCEEECTTSCCCSCCTTSC-TTCCEEECCSSC--CCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECT
T ss_pred CCcEEEcCCCCCccCCCCCC-CCcCEEECCCCC--ccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECC
Confidence 34789999999998887554 899999999996 4556666789999999999999999977 6779999999999999
Q ss_pred CCCCCCchhhhccCCCcEEEccCccCCccc--hhhcCCCCCcEEcccCcccccccChhhhcCCCCC--cEEEcccCC
Q 047163 557 DCPRNDIAILRQLKKLEILRLRHSYTERLP--LEIGQLTRLRLLDLSNCWRLKVIAPNVISKLSRL--EELYMGNSF 629 (658)
Q Consensus 557 ~~~~~~l~~~~~l~~L~~L~l~~~~~~~lp--~~~~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L--~~L~l~~~~ 629 (658)
+|.+..++.. .+++|++|++++|.+..+| ..++++++|++|++++| .++... +..+++| ++|++++|.
T Consensus 109 ~N~l~~lp~~-~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n-~l~~~~---~~~l~~L~L~~L~L~~n~ 180 (562)
T 3a79_B 109 HNRLQNISCC-PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAA-KFRQLD---LLPVAHLHLSCILLDLVS 180 (562)
T ss_dssp TSCCCEECSC-CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECS-BCCTTT---TGGGTTSCEEEEEEEESS
T ss_pred CCcCCccCcc-ccccCCEEECCCCCccccCchHhhcccCcccEEecCCC-ccccCc---hhhhhhceeeEEEeeccc
Confidence 9999988554 8999999999999988864 78999999999999999 676543 4555656 999999864
No 108
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.41 E-value=5e-13 Score=119.67 Aligned_cols=125 Identities=22% Similarity=0.263 Sum_probs=91.4
Q ss_pred CCCceEEEecCCCCCCccchHHhcCCCCCcEEEccCCCCCCCccccccCCCcceEEccCCCCCC-c-hhhhccCCCcEEE
Q 047163 499 PNLQLFLFFGKGYGPMQISDLFFEGTKELKDLSLTRIPFSSLPSSLGSLINLGTLCLEDCPRND-I-AILRQLKKLEILR 576 (658)
Q Consensus 499 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~-l-~~~~~l~~L~~L~ 576 (658)
++++.|.+++|......+|. .+..+++|++|++++|.+..+ ..++.+++|++|++++|.+.. + ..++.+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~-~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEG-LTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCS-CCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHH-HHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 45666666666532123443 346677888888888877776 667778888888888888777 4 4455688888888
Q ss_pred ccCccCCccc--hhhcCCCCCcEEcccCcccccccCh---hhhcCCCCCcEEEcc
Q 047163 577 LRHSYTERLP--LEIGQLTRLRLLDLSNCWRLKVIAP---NVISKLSRLEELYMG 626 (658)
Q Consensus 577 l~~~~~~~lp--~~~~~l~~L~~L~l~~~~~l~~~~~---~~i~~l~~L~~L~l~ 626 (658)
+++|.+..+| ..++.+++|++|++++| .++..++ ..++.+++|+.|+++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNC-EVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTC-GGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCC-cccchHHHHHHHHHHCCCcccccCC
Confidence 8888887765 67888888888888888 7887776 457888888888765
No 109
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.41 E-value=1.4e-12 Score=122.28 Aligned_cols=122 Identities=20% Similarity=0.292 Sum_probs=105.2
Q ss_pred ceEEEecCCCCCCccchHHhcCCCCCcEEEccCCCCCCCccccccCCCcceEEccCCCCCCc--hhhhccCCCcEEEccC
Q 047163 502 QLFLFFGKGYGPMQISDLFFEGTKELKDLSLTRIPFSSLPSSLGSLINLGTLCLEDCPRNDI--AILRQLKKLEILRLRH 579 (658)
Q Consensus 502 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~l--~~~~~l~~L~~L~l~~ 579 (658)
+++++.++. ...+|..+ .++|++|++++|.+..+|..+..+++|++|+|++|.+..+ ..+..+++|++|+|++
T Consensus 13 ~~l~~~~~~--l~~ip~~~---~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~ 87 (193)
T 2wfh_A 13 TVVRCSNKG--LKVLPKGI---PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY 87 (193)
T ss_dssp TEEECTTSC--CSSCCSCC---CTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCC--CCcCCCCC---CCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC
Confidence 467777775 44566543 3689999999999999999999999999999999999888 4689999999999999
Q ss_pred ccCCccch-hhcCCCCCcEEcccCcccccccChhhhcCCCCCcEEEcccCC
Q 047163 580 SYTERLPL-EIGQLTRLRLLDLSNCWRLKVIAPNVISKLSRLEELYMGNSF 629 (658)
Q Consensus 580 ~~~~~lp~-~~~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~ 629 (658)
|.+..+|. .+.++++|++|++++| .++.+++..+..+++|+.|++++|.
T Consensus 88 N~l~~i~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 88 NRLRCIPPRTFDGLKSLRLLSLHGN-DISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp SCCCBCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred CccCEeCHHHhCCCCCCCEEECCCC-CCCeeChhhhhcCccccEEEeCCCC
Confidence 99998864 6889999999999999 8999998878899999999999865
No 110
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.40 E-value=1.9e-12 Score=141.11 Aligned_cols=152 Identities=20% Similarity=0.236 Sum_probs=128.5
Q ss_pred CceEEeccCCCCCcCCCccCCCCCceEEEecCCCCCCccchHHhcCCCCCcEEEccCCCCCCCccccccCCCcceEEccC
Q 047163 478 GPIAISLPHRDIQELPERLQCPNLQLFLFFGKGYGPMQISDLFFEGTKELKDLSLTRIPFSSLPSSLGSLINLGTLCLED 557 (658)
Q Consensus 478 ~~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~L~~ 557 (658)
+++.+.+.+|.+..+|... .++|+.|++++|.+. .+| ..+++|++|++++|.+..+|. ++. +|++|+|++
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l-~~~L~~L~Ls~N~l~--~ip----~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~ 129 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL-PPQITVLEITQNALI--SLP----ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDN 129 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC-CTTCSEEECCSSCCS--CCC----CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCS
T ss_pred CccEEEeCCCCCCccCHhH-cCCCCEEECcCCCCc--ccc----cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCC
Confidence 7899999999999888765 489999999999743 566 357899999999999999988 665 999999999
Q ss_pred CCCCCchhhhccCCCcEEEccCccCCccchhhcCCCCCcEEcccCcccccccChhhhcCCCCCcEEEcccCCCCcccccC
Q 047163 558 CPRNDIAILRQLKKLEILRLRHSYTERLPLEIGQLTRLRLLDLSNCWRLKVIAPNVISKLSRLEELYMGNSFPKWDKVEG 637 (658)
Q Consensus 558 ~~~~~l~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~ 637 (658)
|.+..++. .+++|++|++++|.+..+|. .+++|++|++++| .++.+|. ++ ++|+.|++++|. ++
T Consensus 130 N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N-~L~~lp~--l~--~~L~~L~Ls~N~-----L~- 193 (571)
T 3cvr_A 130 NQLTMLPE--LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNN-QLTFLPE--LP--ESLEALDVSTNL-----LE- 193 (571)
T ss_dssp SCCSCCCC--CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSS-CCSCCCC--CC--TTCCEEECCSSC-----CS-
T ss_pred CcCCCCCC--cCccccEEeCCCCccCcCCC---cCCCcCEEECCCC-CCCCcch--hh--CCCCEEECcCCC-----CC-
Confidence 99998866 78999999999999999997 6789999999999 8998877 55 899999999964 55
Q ss_pred CCccchhhcCCC-------CccccCCCC
Q 047163 638 GSNASLAELKGL-------SKLDTGHNR 658 (658)
Q Consensus 638 ~~~~~l~~l~~L-------~~L~l~~N~ 658 (658)
.+|. +.. +| +.|++++|+
T Consensus 194 ~lp~-~~~--~L~~~~~~L~~L~Ls~N~ 218 (571)
T 3cvr_A 194 SLPA-VPV--RNHHSEETEIFFRCRENR 218 (571)
T ss_dssp SCCC-CC----------CCEEEECCSSC
T ss_pred chhh-HHH--hhhcccccceEEecCCCc
Confidence 5555 443 66 999999985
No 111
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.40 E-value=2.5e-12 Score=141.83 Aligned_cols=75 Identities=21% Similarity=0.135 Sum_probs=57.8
Q ss_pred CCCcEEEccCccCCccchhhcCCCCCcEEcccCcccccccChhhhcCCCCCcEEEcccCCCCcccccCCCccchhhcCCC
Q 047163 570 KKLEILRLRHSYTERLPLEIGQLTRLRLLDLSNCWRLKVIAPNVISKLSRLEELYMGNSFPKWDKVEGGSNASLAELKGL 649 (658)
Q Consensus 570 ~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~L 649 (658)
++|++|++++|.+..+| ..+++|+.|++++| .++.+|. .+++|+.|++++|. ++ .+|..+.++++|
T Consensus 221 ~~L~~L~Ls~N~L~~lp---~~l~~L~~L~Ls~N-~L~~lp~----~~~~L~~L~Ls~N~-----L~-~lp~~l~~l~~L 286 (622)
T 3g06_A 221 SGLKELIVSGNRLTSLP---VLPSELKELMVSGN-RLTSLPM----LPSGLLSLSVYRNQ-----LT-RLPESLIHLSSE 286 (622)
T ss_dssp TTCCEEECCSSCCSCCC---CCCTTCCEEECCSS-CCSCCCC----CCTTCCEEECCSSC-----CC-SCCGGGGGSCTT
T ss_pred CCCCEEEccCCccCcCC---CCCCcCcEEECCCC-CCCcCCc----ccccCcEEeCCCCC-----CC-cCCHHHhhcccc
Confidence 56777777777777766 45577888888887 7777765 46788888888853 55 678889999999
Q ss_pred CccccCCCC
Q 047163 650 SKLDTGHNR 658 (658)
Q Consensus 650 ~~L~l~~N~ 658 (658)
+.|++++|+
T Consensus 287 ~~L~L~~N~ 295 (622)
T 3g06_A 287 TTVNLEGNP 295 (622)
T ss_dssp CEEECCSCC
T ss_pred CEEEecCCC
Confidence 999999985
No 112
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.38 E-value=3e-12 Score=141.21 Aligned_cols=169 Identities=15% Similarity=0.149 Sum_probs=129.0
Q ss_pred CceEEeccCCCCCcCCCccCCCCCceEEEecCCCCCCccchHHhcCCCCCcEEEccCCCCCCCc---cccccCCCcceEE
Q 047163 478 GPIAISLPHRDIQELPERLQCPNLQLFLFFGKGYGPMQISDLFFEGTKELKDLSLTRIPFSSLP---SSLGSLINLGTLC 554 (658)
Q Consensus 478 ~~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp---~~i~~l~~L~~L~ 554 (658)
+++.+.+.+|.+...+....+++|+.|++++|.... .++ ..+..+++|++|++++|.+..+| ..+..+++|++|+
T Consensus 332 ~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ 409 (562)
T 3a79_B 332 NIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTD-SVF-QGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLD 409 (562)
T ss_dssp CCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCT-TTT-TTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEE
T ss_pred cceEEEccCCCcccccCccCCCCceEEECCCCcccc-chh-hhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEE
Confidence 578888888877655543578889999999886332 233 33678889999999999888654 5678889999999
Q ss_pred ccCCCCCC-c--hhhhccCCCcEEEccCccCCc-cchhhcCCCCCcEEcccCcccccccChhhhcCCCCCcEEEcccCCC
Q 047163 555 LEDCPRND-I--AILRQLKKLEILRLRHSYTER-LPLEIGQLTRLRLLDLSNCWRLKVIAPNVISKLSRLEELYMGNSFP 630 (658)
Q Consensus 555 L~~~~~~~-l--~~~~~l~~L~~L~l~~~~~~~-lp~~~~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~ 630 (658)
+++|.+.. + ..+..+++|++|++++|.+.. +|..+. ++|+.|++++| .++.+|+. +.++++|++|++++|.
T Consensus 410 l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N-~l~~ip~~-~~~l~~L~~L~L~~N~- 484 (562)
T 3a79_B 410 VSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNN-RIMSIPKD-VTHLQALQELNVASNQ- 484 (562)
T ss_dssp CTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSS-CCCCCCTT-TTSSCCCSEEECCSSC-
T ss_pred CCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCC-cCcccChh-hcCCCCCCEEECCCCC-
Confidence 99998876 5 347788899999999987743 344332 68999999998 88888877 5688999999998853
Q ss_pred CcccccCCCccc-hhhcCCCCccccCCCC
Q 047163 631 KWDKVEGGSNAS-LAELKGLSKLDTGHNR 658 (658)
Q Consensus 631 ~~~~~~~~~~~~-l~~l~~L~~L~l~~N~ 658 (658)
++ .+|.. +..+++|+.|++++|.
T Consensus 485 ----l~-~l~~~~~~~l~~L~~L~l~~N~ 508 (562)
T 3a79_B 485 ----LK-SVPDGVFDRLTSLQYIWLHDNP 508 (562)
T ss_dssp ----CC-CCCTTSTTTCTTCCCEECCSCC
T ss_pred ----CC-CCCHHHHhcCCCCCEEEecCCC
Confidence 66 45554 8889999999998884
No 113
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.38 E-value=5.2e-13 Score=123.27 Aligned_cols=127 Identities=17% Similarity=0.205 Sum_probs=66.8
Q ss_pred CCCCCcEEEccCCCCCCCccccccCC-CcceEEccCCCCCCchhhhccCCCcEEEccCccCCccchhh-cCCCCCcEEcc
Q 047163 523 GTKELKDLSLTRIPFSSLPSSLGSLI-NLGTLCLEDCPRNDIAILRQLKKLEILRLRHSYTERLPLEI-GQLTRLRLLDL 600 (658)
Q Consensus 523 ~~~~L~~L~l~~~~~~~lp~~i~~l~-~L~~L~L~~~~~~~l~~~~~l~~L~~L~l~~~~~~~lp~~~-~~l~~L~~L~l 600 (658)
.+.+|+.|++++|.+..+|. +..+. +|++|++++|.+..++.++.+++|++|++++|.+..+|+.+ +.+++|++|++
T Consensus 17 ~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 95 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELIL 95 (176)
T ss_dssp CTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEEC
T ss_pred CcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcccccccCCCCCEEECCCCcccccCcchhhcCCCCCEEEC
Confidence 44555555665555555543 33333 55566665555555555555555556666555555555333 55555566665
Q ss_pred cCcccccccCh-hhhcCCCCCcEEEcccCCCCcccccCCCccc----hhhcCCCCccccCCC
Q 047163 601 SNCWRLKVIAP-NVISKLSRLEELYMGNSFPKWDKVEGGSNAS----LAELKGLSKLDTGHN 657 (658)
Q Consensus 601 ~~~~~l~~~~~-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~----l~~l~~L~~L~l~~N 657 (658)
++| .++.+|. ..++.+++|++|++++|. +. ..|.. +..+++|+.|++++|
T Consensus 96 ~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~-----i~-~~~~~~~~~~~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 96 TNN-SLVELGDLDPLASLKSLTYLCILRNP-----VT-NKKHYRLYVIYKVPQVRVLDFQKV 150 (176)
T ss_dssp CSC-CCCCGGGGGGGGGCTTCCEEECCSSG-----GG-GSTTHHHHHHHHCTTCSEETTEEC
T ss_pred CCC-cCCcchhhHhhhcCCCCCEEEecCCC-----CC-CcHhHHHHHHHHCCccceeCCCcC
Confidence 555 4555543 124555555555555532 32 22332 555555555555554
No 114
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.37 E-value=1.9e-13 Score=154.39 Aligned_cols=127 Identities=19% Similarity=0.180 Sum_probs=98.8
Q ss_pred ccCCCCCcCCCcc-CCCCCceEEEecCCCCCCccchHHhcCCCCCcEEEccCCCCCCCccccccCCCcceEEccCCCCCC
Q 047163 484 LPHRDIQELPERL-QCPNLQLFLFFGKGYGPMQISDLFFEGTKELKDLSLTRIPFSSLPSSLGSLINLGTLCLEDCPRND 562 (658)
Q Consensus 484 l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~ 562 (658)
+..|.+...+..+ .+++|+.|++++|. ...++..++ .+++|++|+|++|.+..+|..++.|++|++|+|++|.+..
T Consensus 208 ~~~n~~~~~~~~~~~l~~L~~L~Ls~n~--l~~l~~~~~-~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~ 284 (727)
T 4b8c_D 208 DIENRMVMPKDSKYDDQLWHALDLSNLQ--IFNISANIF-KYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTS 284 (727)
T ss_dssp --------------CCCCCCEEECTTSC--CSCCCGGGG-GCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSS
T ss_pred ccccceecChhhhccCCCCcEEECCCCC--CCCCChhhc-CCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCc
Confidence 3344444333333 78889999999986 346777655 7899999999999999999999999999999999999888
Q ss_pred c-hhhhccCCCcEEEccCccCCccchhhcCCCCCcEEcccCcccccccChhhh
Q 047163 563 I-AILRQLKKLEILRLRHSYTERLPLEIGQLTRLRLLDLSNCWRLKVIAPNVI 614 (658)
Q Consensus 563 l-~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~i 614 (658)
+ ..++.|++|++|+|++|.++.+|..+++|++|++|+|++| .++..++..+
T Consensus 285 lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N-~l~~~~p~~~ 336 (727)
T 4b8c_D 285 LPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGN-PLEKQFLKIL 336 (727)
T ss_dssp CCSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTS-CCCSHHHHHH
T ss_pred cChhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCC-ccCCCChHHH
Confidence 7 6789999999999999999999988999999999999999 7877666544
No 115
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.35 E-value=3.9e-12 Score=119.11 Aligned_cols=123 Identities=20% Similarity=0.264 Sum_probs=106.2
Q ss_pred eEEeccCCCCCcCCCccCCCCCceEEEecCCCCCCccchHHhcCCCCCcEEEccCCCCCCCc-cccccCCCcceEEccCC
Q 047163 480 IAISLPHRDIQELPERLQCPNLQLFLFFGKGYGPMQISDLFFEGTKELKDLSLTRIPFSSLP-SSLGSLINLGTLCLEDC 558 (658)
Q Consensus 480 ~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp-~~i~~l~~L~~L~L~~~ 558 (658)
+.+.+.++.+..+|... .++|+.|.+.+|.+ ..+|. .|..+++|++|++++|.+..++ ..+..+++|++|+|++|
T Consensus 13 ~~l~~~~~~l~~ip~~~-~~~l~~L~L~~n~i--~~ip~-~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGI-PRDVTELYLDGNQF--TLVPK-ELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCSSCCSCC-CTTCCEEECCSSCC--CSCCG-GGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCCcCCCCC-CCCCCEEECCCCcC--chhHH-HhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 46788888898888754 47899999999974 46664 5789999999999999999886 46889999999999999
Q ss_pred CCCCc--hhhhccCCCcEEEccCccCCccch-hhcCCCCCcEEcccCccccc
Q 047163 559 PRNDI--AILRQLKKLEILRLRHSYTERLPL-EIGQLTRLRLLDLSNCWRLK 607 (658)
Q Consensus 559 ~~~~l--~~~~~l~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~~~~l~ 607 (658)
.+..+ ..+..+++|++|+|++|.+..+|. .+..+++|++|++++| .+.
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N-~~~ 139 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN-PLY 139 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSS-CEE
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCC-Cee
Confidence 99988 469999999999999999999986 4789999999999998 454
No 116
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.35 E-value=3.5e-13 Score=141.34 Aligned_cols=174 Identities=18% Similarity=0.229 Sum_probs=131.2
Q ss_pred CceEEeccCCCCCc-----CCCcc-CCCCCceEEEecCCCCCC---ccchHHhcCC---------CCCcEEEccCCCCC-
Q 047163 478 GPIAISLPHRDIQE-----LPERL-QCPNLQLFLFFGKGYGPM---QISDLFFEGT---------KELKDLSLTRIPFS- 538 (658)
Q Consensus 478 ~~~~l~l~~~~~~~-----~~~~~-~~~~L~~L~l~~~~~~~~---~~~~~~~~~~---------~~L~~L~l~~~~~~- 538 (658)
++++|.+++|.+.. ++..+ .+++|++|.+++|..... .++. .+..+ ++|++|++++|.+.
T Consensus 95 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~-~l~~l~~~~~~~~~~~L~~L~L~~n~l~~ 173 (386)
T 2ca6_A 95 KLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIAR-ALQELAVNKKAKNAPPLRSIICGRNRLEN 173 (386)
T ss_dssp TCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHH-HHHHHHHHHHHHTCCCCCEEECCSSCCTG
T ss_pred cccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHH-HHHHHhhhhhcccCCCCcEEECCCCCCCc
Confidence 78899999988765 33333 688999999999873211 1111 12333 89999999999987
Q ss_pred -CCc---cccccCCCcceEEccCCCCCC-----c-h-hhhccCCCcEEEccCccC-----CccchhhcCCCCCcEEcccC
Q 047163 539 -SLP---SSLGSLINLGTLCLEDCPRND-----I-A-ILRQLKKLEILRLRHSYT-----ERLPLEIGQLTRLRLLDLSN 602 (658)
Q Consensus 539 -~lp---~~i~~l~~L~~L~L~~~~~~~-----l-~-~~~~l~~L~~L~l~~~~~-----~~lp~~~~~l~~L~~L~l~~ 602 (658)
.+| ..+..+++|++|++++|.+.. + + .+..+++|++|+|++|.+ ..+|..+.++++|++|++++
T Consensus 174 ~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~ 253 (386)
T 2ca6_A 174 GSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLND 253 (386)
T ss_dssp GGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTT
T ss_pred HHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCC
Confidence 344 467788899999999998872 2 4 788899999999999987 66788889999999999999
Q ss_pred ccccccc----Chhhh--cCCCCCcEEEcccCCCCcccccC----CCccch-hhcCCCCccccCCCC
Q 047163 603 CWRLKVI----APNVI--SKLSRLEELYMGNSFPKWDKVEG----GSNASL-AELKGLSKLDTGHNR 658 (658)
Q Consensus 603 ~~~l~~~----~~~~i--~~l~~L~~L~l~~~~~~~~~~~~----~~~~~l-~~l~~L~~L~l~~N~ 658 (658)
| .++.. .+..+ +++++|++|++++|. +++ .+|..+ .++++|+.|++++|+
T Consensus 254 n-~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~-----i~~~g~~~l~~~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 254 C-LLSARGAAAVVDAFSKLENIGLQTLRLQYNE-----IELDAVRTLKTVIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp C-CCCHHHHHHHHHHHHTCSSCCCCEEECCSSC-----CBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred C-CCchhhHHHHHHHHhhccCCCeEEEECcCCc-----CCHHHHHHHHHHHHhcCCCceEEEccCCc
Confidence 9 67654 12335 448999999999864 555 366666 668999999999884
No 117
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.35 E-value=7.3e-12 Score=138.19 Aligned_cols=119 Identities=19% Similarity=0.262 Sum_probs=84.5
Q ss_pred CceEEeccCCCCCcCCCccCCCCCceEEEecCCCCCCccchHHhcCCCCCcEEEccCCCCCCCccccccCCCcceEEccC
Q 047163 478 GPIAISLPHRDIQELPERLQCPNLQLFLFFGKGYGPMQISDLFFEGTKELKDLSLTRIPFSSLPSSLGSLINLGTLCLED 557 (658)
Q Consensus 478 ~~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~L~~ 557 (658)
+++.|.+.+|.+..+|. .+++|++|++++|. ...+|. .+++|++|++++|.+..+|. .+++|++|++++
T Consensus 62 ~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N~--l~~lp~----~l~~L~~L~Ls~N~l~~l~~---~l~~L~~L~L~~ 130 (622)
T 3g06_A 62 HITTLVIPDNNLTSLPA--LPPELRTLEVSGNQ--LTSLPV----LPPGLLELSIFSNPLTHLPA---LPSGLCKLWIFG 130 (622)
T ss_dssp TCSEEEECSCCCSCCCC--CCTTCCEEEECSCC--CSCCCC----CCTTCCEEEECSCCCCCCCC---CCTTCCEEECCS
T ss_pred CCcEEEecCCCCCCCCC--cCCCCCEEEcCCCc--CCcCCC----CCCCCCEEECcCCcCCCCCC---CCCCcCEEECCC
Confidence 78888888888887777 67888888888886 334554 56888888888888888776 567788888888
Q ss_pred CCCCCchhhhccCCCcEEEccCccCCccchhhcCC-----------------CCCcEEcccCcccccccC
Q 047163 558 CPRNDIAILRQLKKLEILRLRHSYTERLPLEIGQL-----------------TRLRLLDLSNCWRLKVIA 610 (658)
Q Consensus 558 ~~~~~l~~~~~l~~L~~L~l~~~~~~~lp~~~~~l-----------------~~L~~L~l~~~~~l~~~~ 610 (658)
|++..++. .+++|++|++++|.+..+|..+.+| ++|+.|++++| .++.+|
T Consensus 131 N~l~~lp~--~l~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N-~l~~l~ 197 (622)
T 3g06_A 131 NQLTSLPV--LPPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDN-QLASLP 197 (622)
T ss_dssp SCCSCCCC--CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSS-CCSCCC
T ss_pred CCCCcCCC--CCCCCCEEECcCCcCCCcCCccCCCCEEECCCCCCCCCcccCCCCcEEECCCC-CCCCCC
Confidence 87777643 2477888888888777666432221 55566666666 555544
No 118
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.34 E-value=5.4e-13 Score=139.90 Aligned_cols=173 Identities=17% Similarity=0.280 Sum_probs=114.8
Q ss_pred CceEEeccCCCCCcC----CCc--------cCCCCCceEEEecCCCCCC---ccchHHhcCCCCCcEEEccCCCCCC---
Q 047163 478 GPIAISLPHRDIQEL----PER--------LQCPNLQLFLFFGKGYGPM---QISDLFFEGTKELKDLSLTRIPFSS--- 539 (658)
Q Consensus 478 ~~~~l~l~~~~~~~~----~~~--------~~~~~L~~L~l~~~~~~~~---~~~~~~~~~~~~L~~L~l~~~~~~~--- 539 (658)
+++.+.+++|.+..+ |.. ..+++|+.|++++|..... .++. .+..+++|++|+|++|.+..
T Consensus 61 ~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~-~l~~~~~L~~L~L~~n~l~~~~~ 139 (386)
T 2ca6_A 61 DLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLID-FLSKHTPLEHLYLHNNGLGPQAG 139 (386)
T ss_dssp TCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHH-HHHHCTTCCEEECCSSCCHHHHH
T ss_pred CccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHH-HHHhCCCCCEEECcCCCCCHHHH
Confidence 677888777655433 221 2567888888888764332 1222 35677888888888887752
Q ss_pred --CccccccC---------CCcceEEccCCCCCC--c----hhhhccCCCcEEEccCccCC------ccchhhcCCCCCc
Q 047163 540 --LPSSLGSL---------INLGTLCLEDCPRND--I----AILRQLKKLEILRLRHSYTE------RLPLEIGQLTRLR 596 (658)
Q Consensus 540 --lp~~i~~l---------~~L~~L~L~~~~~~~--l----~~~~~l~~L~~L~l~~~~~~------~lp~~~~~l~~L~ 596 (658)
++..+..+ ++|++|++++|.+.. + ..+..+++|++|++++|.+. -+|..+.++++|+
T Consensus 140 ~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~ 219 (386)
T 2ca6_A 140 AKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELK 219 (386)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCC
T ss_pred HHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCcc
Confidence 33334444 788888888887762 2 35667788888888888776 2343677888888
Q ss_pred EEcccCcccc-----cccChhhhcCCCCCcEEEcccCCCCcccccCC----Cccchhh--cCCCCccccCCCC
Q 047163 597 LLDLSNCWRL-----KVIAPNVISKLSRLEELYMGNSFPKWDKVEGG----SNASLAE--LKGLSKLDTGHNR 658 (658)
Q Consensus 597 ~L~l~~~~~l-----~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~----~~~~l~~--l~~L~~L~l~~N~ 658 (658)
+|++++| .+ ..++. .+..+++|++|++++|. +++. +|..+.. +++|+.|++++|+
T Consensus 220 ~L~Ls~n-~l~~~g~~~l~~-~l~~~~~L~~L~L~~n~-----i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~ 285 (386)
T 2ca6_A 220 VLDLQDN-TFTHLGSSALAI-ALKSWPNLRELGLNDCL-----LSARGAAAVVDAFSKLENIGLQTLRLQYNE 285 (386)
T ss_dssp EEECCSS-CCHHHHHHHHHH-HGGGCTTCCEEECTTCC-----CCHHHHHHHHHHHHTCSSCCCCEEECCSSC
T ss_pred EEECcCC-CCCcHHHHHHHH-HHccCCCcCEEECCCCC-----CchhhHHHHHHHHhhccCCCeEEEECcCCc
Confidence 8888888 56 33444 47788888888888754 4443 3445533 7888888888874
No 119
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.33 E-value=3.2e-12 Score=143.12 Aligned_cols=174 Identities=17% Similarity=0.194 Sum_probs=137.0
Q ss_pred CceEEeccCCCCCcCCC-ccCCCCCceEEEecCCCCCCccchHHhcCCCCCcEEEccCCCCCCC-ccccccCCCcceEEc
Q 047163 478 GPIAISLPHRDIQELPE-RLQCPNLQLFLFFGKGYGPMQISDLFFEGTKELKDLSLTRIPFSSL-PSSLGSLINLGTLCL 555 (658)
Q Consensus 478 ~~~~l~l~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~L 555 (658)
.++.+.+..+....++. ...+++|+.+.+.++. .....+...+..+..++.+++++|.+... |..+..+++|++|++
T Consensus 398 ~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~-~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~L 476 (635)
T 4g8a_A 398 SLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKM 476 (635)
T ss_dssp CCCEEECCSCSEEEECSCCTTCTTCCEEECTTSE-EESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEEC
T ss_pred hhhhhhccccccccccccccccccccchhhhhcc-ccccccccccccccccccccccccccccccccccccchhhhhhhh
Confidence 45555555554443333 2367788888877654 22223444578889999999999998854 566778899999999
Q ss_pred cCCCCC-Cc--hhhhccCCCcEEEccCccCCcc-chhhcCCCCCcEEcccCcccccccChhhhcCCCCCcEEEcccCCCC
Q 047163 556 EDCPRN-DI--AILRQLKKLEILRLRHSYTERL-PLEIGQLTRLRLLDLSNCWRLKVIAPNVISKLSRLEELYMGNSFPK 631 (658)
Q Consensus 556 ~~~~~~-~l--~~~~~l~~L~~L~l~~~~~~~l-p~~~~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~~ 631 (658)
++|... .+ ..+..+++|++|+|++|.+..+ |..++++++|+.|++++| .++.+++..++++++|++|++++
T Consensus 477 s~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~Ls~---- 551 (635)
T 4g8a_A 477 AGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN-NFFSLDTFPYKCLNSLQVLDYSL---- 551 (635)
T ss_dssp TTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCCBCCCGGGTTCTTCCEEECTT----
T ss_pred hhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCC-cCCCCChhHHhCCCCCCEEECCC----
Confidence 998743 33 5788899999999999999888 567899999999999999 89999988899999999999999
Q ss_pred cccccCCCccchhhc-CCCCccccCCCC
Q 047163 632 WDKVEGGSNASLAEL-KGLSKLDTGHNR 658 (658)
Q Consensus 632 ~~~~~~~~~~~l~~l-~~L~~L~l~~N~ 658 (658)
|.+++..|..+..+ ++|+.|++++|.
T Consensus 552 -N~l~~~~~~~l~~l~~~L~~L~L~~Np 578 (635)
T 4g8a_A 552 -NHIMTSKKQELQHFPSSLAFLNLTQND 578 (635)
T ss_dssp -SCCCBCCSSCTTCCCTTCCEEECTTCC
T ss_pred -CcCCCCCHHHHHhhhCcCCEEEeeCCC
Confidence 45888888899888 689999999984
No 120
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.32 E-value=8.3e-12 Score=115.26 Aligned_cols=123 Identities=23% Similarity=0.345 Sum_probs=103.0
Q ss_pred CceEEEecCCCCCCccchHHhcCCCCCcEEEccCCCCCCCccc-cccCCCcceEEccCCCCCCc--hhhhccCCCcEEEc
Q 047163 501 LQLFLFFGKGYGPMQISDLFFEGTKELKDLSLTRIPFSSLPSS-LGSLINLGTLCLEDCPRNDI--AILRQLKKLEILRL 577 (658)
Q Consensus 501 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~-i~~l~~L~~L~L~~~~~~~l--~~~~~l~~L~~L~l 577 (658)
.+.+.+.++. ...+|..+ .++|+.|++++|.+..+|.. +..+++|++|++++|.+..+ ..+..+++|++|++
T Consensus 9 ~~~l~~~~~~--l~~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 83 (177)
T 2o6r_A 9 GTEIRCNSKG--LTSVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYL 83 (177)
T ss_dssp TTEEECCSSC--CSSCCTTC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCEEEecCCC--CccCCCCC---CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEEC
Confidence 4677777775 44556443 46899999999999988754 68899999999999999887 34789999999999
Q ss_pred cCccCCccchh-hcCCCCCcEEcccCcccccccChhhhcCCCCCcEEEcccCC
Q 047163 578 RHSYTERLPLE-IGQLTRLRLLDLSNCWRLKVIAPNVISKLSRLEELYMGNSF 629 (658)
Q Consensus 578 ~~~~~~~lp~~-~~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~ 629 (658)
++|.+..+|.. +.++++|++|++++| .++.+|+..+..+++|++|++++|.
T Consensus 84 ~~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 84 HENKLQSLPNGVFDKLTQLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCCccccCHHHhhCCcccCEEECcCC-cceEeCHHHhcCCcccCEEEecCCC
Confidence 99999998764 688999999999999 8999998877889999999999854
No 121
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.32 E-value=1.4e-11 Score=131.59 Aligned_cols=135 Identities=15% Similarity=0.206 Sum_probs=60.8
Q ss_pred CceEEeccCCCCCcCCCccCCCCCceEEEecCCCCCCccchHHhcCCCCCcEEEccCCCCCCCccccccCCCcceEEccC
Q 047163 478 GPIAISLPHRDIQELPERLQCPNLQLFLFFGKGYGPMQISDLFFEGTKELKDLSLTRIPFSSLPSSLGSLINLGTLCLED 557 (658)
Q Consensus 478 ~~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~L~~ 557 (658)
+++.+.+.+|.+..++... ++|++|.+++|.. ..+|. +..+++|++|++++|.+..+|..+ .+|++|++++
T Consensus 112 ~L~~L~l~~n~l~~l~~~~--~~L~~L~L~~n~l--~~lp~--~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~ 182 (454)
T 1jl5_A 112 SLKSLLVDNNNLKALSDLP--PLLEYLGVSNNQL--EKLPE--LQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGN 182 (454)
T ss_dssp TCCEEECCSSCCSCCCSCC--TTCCEEECCSSCC--SSCCC--CTTCTTCCEEECCSSCCSCCCCCC---TTCCEEECCS
T ss_pred CCcEEECCCCccCcccCCC--CCCCEEECcCCCC--CCCcc--cCCCCCCCEEECCCCcCcccCCCc---ccccEEECcC
Confidence 3444444444444433211 3455555555532 12332 445555555555555555444322 2455555555
Q ss_pred CCCCCchhhhccCCCcEEEccCccCCccchhhcCCCCCcEEcccCcccccccChhhhcCCCCCcEEEccc
Q 047163 558 CPRNDIAILRQLKKLEILRLRHSYTERLPLEIGQLTRLRLLDLSNCWRLKVIAPNVISKLSRLEELYMGN 627 (658)
Q Consensus 558 ~~~~~l~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~ 627 (658)
|.+..++.++.+++|++|++++|.+..+|... .+|++|++++| .++.+|. ++.+++|++|++++
T Consensus 183 n~l~~l~~~~~l~~L~~L~l~~N~l~~l~~~~---~~L~~L~l~~n-~l~~lp~--~~~l~~L~~L~l~~ 246 (454)
T 1jl5_A 183 NQLEELPELQNLPFLTAIYADNNSLKKLPDLP---LSLESIVAGNN-ILEELPE--LQNLPFLTTIYADN 246 (454)
T ss_dssp SCCSSCCCCTTCTTCCEEECCSSCCSSCCCCC---TTCCEEECCSS-CCSSCCC--CTTCTTCCEEECCS
T ss_pred CcCCcCccccCCCCCCEEECCCCcCCcCCCCc---CcccEEECcCC-cCCcccc--cCCCCCCCEEECCC
Confidence 54444444445555555555544444443311 24444444444 3443332 44444444444444
No 122
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.32 E-value=6e-12 Score=117.83 Aligned_cols=127 Identities=19% Similarity=0.281 Sum_probs=107.7
Q ss_pred ceEEeccCCCCCcCCCccCCCCCceEEEecCCCCCCccch-HHhcCCCCCcEEEccCCCCCCC-ccccccCCCcceEEcc
Q 047163 479 PIAISLPHRDIQELPERLQCPNLQLFLFFGKGYGPMQISD-LFFEGTKELKDLSLTRIPFSSL-PSSLGSLINLGTLCLE 556 (658)
Q Consensus 479 ~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~L~ 556 (658)
.+.+.++++.+..+|.... ++++.|.+.+|. ...++. .++..+++|++|++++|.+..+ |..+..+++|++|+|+
T Consensus 10 ~~~l~~s~~~l~~ip~~~~-~~l~~L~l~~n~--i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 10 GTTVDCTGRGLKEIPRDIP-LHTTELLLNDNE--LGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp TTEEECTTSCCSSCCSCCC-TTCSEEECCSCC--CCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCEEEcCCCCcCcCccCCC-CCCCEEECCCCc--CCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence 3578888999988887553 489999999996 344443 3578999999999999999987 6789999999999999
Q ss_pred CCCCCCc--hhhhccCCCcEEEccCccCCcc-chhhcCCCCCcEEcccCccccccc
Q 047163 557 DCPRNDI--AILRQLKKLEILRLRHSYTERL-PLEIGQLTRLRLLDLSNCWRLKVI 609 (658)
Q Consensus 557 ~~~~~~l--~~~~~l~~L~~L~l~~~~~~~l-p~~~~~l~~L~~L~l~~~~~l~~~ 609 (658)
+|.+..+ ..+..+++|++|+|++|.+..+ |..+..+++|++|++++| .+...
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~c~ 141 (192)
T 1w8a_A 87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN-PFNCN 141 (192)
T ss_dssp SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTC-CBCCS
T ss_pred CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCC-CccCc
Confidence 9999988 4588999999999999998877 677899999999999999 56543
No 123
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.31 E-value=1.5e-13 Score=129.57 Aligned_cols=123 Identities=18% Similarity=0.162 Sum_probs=68.3
Q ss_pred CCCCCceEEEecCCCCCCccchHHhcCCCCCcEEEccCCCCCCCccccccCCCcceEEccCCCCCCchhhhccCCCcEEE
Q 047163 497 QCPNLQLFLFFGKGYGPMQISDLFFEGTKELKDLSLTRIPFSSLPSSLGSLINLGTLCLEDCPRNDIAILRQLKKLEILR 576 (658)
Q Consensus 497 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~l~~~~~l~~L~~L~ 576 (658)
.+++|+.|++++|.. ..+| .+..+++|++|++++|.+..+|..+..+++|++|++++|.+..++.+..+++|++|+
T Consensus 46 ~l~~L~~L~ls~n~l--~~l~--~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~~~~~l~~L~~L~ 121 (198)
T 1ds9_A 46 TLKACKHLALSTNNI--EKIS--SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLY 121 (198)
T ss_dssp HTTTCSEEECSEEEE--SCCC--CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHHHHHHHHHSSEEE
T ss_pred cCCCCCEEECCCCCC--cccc--ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCCccccCCCCCEEE
Confidence 455666666665542 2233 245556666666666666655555555566666666666655555555566666666
Q ss_pred ccCccCCccch--hhcCCCCCcEEcccCcccccccChh----------hhcCCCCCcEEE
Q 047163 577 LRHSYTERLPL--EIGQLTRLRLLDLSNCWRLKVIAPN----------VISKLSRLEELY 624 (658)
Q Consensus 577 l~~~~~~~lp~--~~~~l~~L~~L~l~~~~~l~~~~~~----------~i~~l~~L~~L~ 624 (658)
+++|.+..+|. .+..+++|++|++++| .+...++. .+..+++|+.|+
T Consensus 122 l~~N~i~~~~~~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 122 MSNNKITNWGEIDKLAALDKLEDLLLAGN-PLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp ESEEECCCHHHHHHHTTTTTCSEEEECSC-HHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred CCCCcCCchhHHHHHhcCCCCCEEEecCC-ccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 66665555543 4555666666666665 44333221 245555555554
No 124
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.31 E-value=1.4e-11 Score=131.59 Aligned_cols=157 Identities=22% Similarity=0.243 Sum_probs=129.2
Q ss_pred CceEEeccCCCCCcCCCccCCCCCceEEEecCCCCCCccchHHhcCCCCCcEEEccCCCCCCCccccccCCCcceEEccC
Q 047163 478 GPIAISLPHRDIQELPERLQCPNLQLFLFFGKGYGPMQISDLFFEGTKELKDLSLTRIPFSSLPSSLGSLINLGTLCLED 557 (658)
Q Consensus 478 ~~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~L~~ 557 (658)
+++.+.+++|.+..+|.. .++|+.|++++|.. ..++. ..++|++|++++|.+..+| .++.+++|++|++++
T Consensus 92 ~L~~L~l~~n~l~~lp~~--~~~L~~L~l~~n~l--~~l~~----~~~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~ 162 (454)
T 1jl5_A 92 HLESLVASCNSLTELPEL--PQSLKSLLVDNNNL--KALSD----LPPLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDN 162 (454)
T ss_dssp TCSEEECCSSCCSSCCCC--CTTCCEEECCSSCC--SCCCS----CCTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCS
T ss_pred CCCEEEccCCcCCccccc--cCCCcEEECCCCcc--CcccC----CCCCCCEEECcCCCCCCCc-ccCCCCCCCEEECCC
Confidence 789999999998888763 48999999999863 33332 1268999999999999988 699999999999999
Q ss_pred CCCCCchhhhccCCCcEEEccCccCCccchhhcCCCCCcEEcccCcccccccChhhhcCCCCCcEEEcccCCCCcccccC
Q 047163 558 CPRNDIAILRQLKKLEILRLRHSYTERLPLEIGQLTRLRLLDLSNCWRLKVIAPNVISKLSRLEELYMGNSFPKWDKVEG 637 (658)
Q Consensus 558 ~~~~~l~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~ 637 (658)
|.+..++.. ..+|++|++++|.+..+| .++++++|++|++++| .++.+|.. .++|++|++++|. +.
T Consensus 163 N~l~~lp~~--~~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N-~l~~l~~~----~~~L~~L~l~~n~-----l~- 228 (454)
T 1jl5_A 163 NSLKKLPDL--PPSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNN-SLKKLPDL----PLSLESIVAGNNI-----LE- 228 (454)
T ss_dssp SCCSCCCCC--CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSS-CCSSCCCC----CTTCCEEECCSSC-----CS-
T ss_pred CcCcccCCC--cccccEEECcCCcCCcCc-cccCCCCCCEEECCCC-cCCcCCCC----cCcccEEECcCCc-----CC-
Confidence 998877432 359999999999999998 5899999999999999 78877652 3689999999864 54
Q ss_pred CCccchhhcCCCCccccCCCC
Q 047163 638 GSNASLAELKGLSKLDTGHNR 658 (658)
Q Consensus 638 ~~~~~l~~l~~L~~L~l~~N~ 658 (658)
.+| .+..+++|+.|++++|+
T Consensus 229 ~lp-~~~~l~~L~~L~l~~N~ 248 (454)
T 1jl5_A 229 ELP-ELQNLPFLTTIYADNNL 248 (454)
T ss_dssp SCC-CCTTCTTCCEEECCSSC
T ss_pred ccc-ccCCCCCCCEEECCCCc
Confidence 566 48889999999998874
No 125
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.29 E-value=1e-10 Score=120.57 Aligned_cols=261 Identities=14% Similarity=0.126 Sum_probs=147.9
Q ss_pred cccccccchHHHHHHHHHHhccCCccEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCCC------CHHHHHH
Q 047163 152 KDFEAFDSKMEVFQDVMEALKDDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQNP------DHHKIQD 225 (658)
Q Consensus 152 ~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~------~~~~~~~ 225 (658)
..+..|+||+.+++.|.+++..+ +++.|+|++|+|||||++.+++.. . ++|+++.... +...+.+
T Consensus 9 ~~~~~~~gR~~el~~L~~~l~~~--~~v~i~G~~G~GKT~Ll~~~~~~~------~-~~~~~~~~~~~~~~~~~~~~~~~ 79 (350)
T 2qen_A 9 TRREDIFDREEESRKLEESLENY--PLTLLLGIRRVGKSSLLRAFLNER------P-GILIDCRELYAERGHITREELIK 79 (350)
T ss_dssp CSGGGSCSCHHHHHHHHHHHHHC--SEEEEECCTTSSHHHHHHHHHHHS------S-EEEEEHHHHHHTTTCBCHHHHHH
T ss_pred CChHhcCChHHHHHHHHHHHhcC--CeEEEECCCcCCHHHHHHHHHHHc------C-cEEEEeecccccccCCCHHHHHH
Confidence 45567999999999999988654 799999999999999999998764 1 6788775432 5556666
Q ss_pred HHHHhcCC---------------CCCC---CCCHHHHHHHHHHHHhcCCeEEEEEecCCcccCc---------ccccCcc
Q 047163 226 KLAFGLGM---------------EFGF---NENMFQRASRLCERLKKEKRLLIILDNIWIELEF---------DKIGIPS 278 (658)
Q Consensus 226 ~i~~~l~~---------------~~~~---~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~---------~~l~~~~ 278 (658)
.+...+.. .... .....+....+.+.....++++|||||++....+ ..+....
T Consensus 80 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~ 159 (350)
T 2qen_A 80 ELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYAY 159 (350)
T ss_dssp HHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHHHH
Confidence 66655432 0000 1223334444444443223899999999764321 1110000
Q ss_pred ---cCC---Ccc-----------------------------ccccchhhHHhhhccC------CccHHHHHHHHHcCCch
Q 047163 279 ---GNV---EKE-----------------------------RTDARSRCTIILTKTS------TIQPIADEIVEICGGLP 317 (658)
Q Consensus 279 ---~~~---~~~-----------------------------~~~~~~~~~~Lf~~~~------~~~~~~~~i~~~c~glP 317 (658)
+.. ..| ......++.+++.+.. ...+.+..+...++|.|
T Consensus 160 ~~~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~~~~~~~~i~~~tgG~P 239 (350)
T 2qen_A 160 DSLPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDVPENEIEEAVELLDGIP 239 (350)
T ss_dssp HHCTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHTTCH
T ss_pred HhcCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCH
Confidence 000 000 0011112444544321 23467789999999999
Q ss_pred hHHHHHHHHhcc-CChHHHHH-HHHHHhcCCCCCCCchhHHHHHHHHhhHhcC---CchhHHHHHHHhcccccCCcccHH
Q 047163 318 VAVTTVANALKS-KSLDIWKD-ALNQLRSSNPREIDGMDKKVYTSIELSYNLL---ASKEAKSLFRLCGLYNEGHAIQVA 392 (658)
Q Consensus 318 Lai~~~g~~L~~-~~~~~w~~-~l~~l~~~~~~~~~~~~~~i~~~l~~sy~~L---~~~~~k~~fl~~~~fp~~~~i~~~ 392 (658)
+++..++..+.. .+...+.. ..+. +...+.-.+..+ ++. .+..+..+|. +. .+..
T Consensus 240 ~~l~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~l~~l~~~~~~-~~~~l~~la~---g~-~~~~ 299 (350)
T 2qen_A 240 GWLVVFGVEYLRNGDFGRAMKRTLEV---------------AKGLIMGELEELRRRSPR-YVDILRAIAL---GY-NRWS 299 (350)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHH---------------HHHHHHHHHHHHHHHCHH-HHHHHHHHHT---TC-CSHH
T ss_pred HHHHHHHHHHhccccHhHHHHHHHHH---------------HHHHHHHHHHHHHhCChh-HHHHHHHHHh---CC-CCHH
Confidence 999998876432 22222211 1111 111111112222 555 7888888887 22 4555
Q ss_pred HHHHHHhhhcccccccCHHHHHHHHHHHHHHHHHccccccCCCCCceee-cHHHHHHHH
Q 047163 393 SILRYGMGWGLLENVYTLEEARSRVHRLIDNLKSSCLLLDGDAKDEAKM-YDVIHVVAV 450 (658)
Q Consensus 393 ~li~~w~a~g~i~~~~~~~~~~~~~~~~~~~L~~~~ll~~~~~~~~~~~-h~lv~~~~~ 450 (658)
.+....-... . ..+. ..+..+++.|.+.+++... ...|.+ |++++.+.+
T Consensus 300 ~l~~~~~~~~--~-~~~~----~~~~~~l~~L~~~gli~~~--~~~y~~~~p~~~~~~~ 349 (350)
T 2qen_A 300 LIRDYLAVKG--T-KIPE----PRLYALLENLKKMNWIVEE--DNTYKIADPVVATVLR 349 (350)
T ss_dssp HHHHHHHHTT--C-CCCH----HHHHHHHHHHHHTTSEEEE--TTEEEESSHHHHHHHT
T ss_pred HHHHHHHHHh--C-CCCH----HHHHHHHHHHHhCCCEEec--CCEEEEecHHHHHHHc
Confidence 5544321110 0 0111 2345578889999998764 245665 778888764
No 126
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.28 E-value=1.3e-11 Score=135.28 Aligned_cols=106 Identities=20% Similarity=0.203 Sum_probs=58.2
Q ss_pred CceEEEecCCCCCCccchHHhcCCCCCcEEEccCCCCCCCccccccCCCcceEEccCCCCCCchhhhccCCCcEEEccCc
Q 047163 501 LQLFLFFGKGYGPMQISDLFFEGTKELKDLSLTRIPFSSLPSSLGSLINLGTLCLEDCPRNDIAILRQLKKLEILRLRHS 580 (658)
Q Consensus 501 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~l~~~~~l~~L~~L~l~~~ 580 (658)
|+.|++++|. ...+|. +..+++|++|+|++|.+..+|..++.+++|++|+|++|.++.++.++.+++|++|+|++|
T Consensus 443 L~~L~Ls~n~--l~~lp~--~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~l~~l~~L~~L~Ls~N 518 (567)
T 1dce_A 443 VRVLHLAHKD--LTVLCH--LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNN 518 (567)
T ss_dssp CSEEECTTSC--CSSCCC--GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSS
T ss_pred ceEEEecCCC--CCCCcC--ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCcccCCCCCCcEEECCCC
Confidence 5556665554 223443 455555666666666555555555555555555555555555555555555555555555
Q ss_pred cCCcc--chhhcCCCCCcEEcccCcccccccCh
Q 047163 581 YTERL--PLEIGQLTRLRLLDLSNCWRLKVIAP 611 (658)
Q Consensus 581 ~~~~l--p~~~~~l~~L~~L~l~~~~~l~~~~~ 611 (658)
.+..+ |..++++++|+.|++++| .++..|+
T Consensus 519 ~l~~~~~p~~l~~l~~L~~L~L~~N-~l~~~~~ 550 (567)
T 1dce_A 519 RLQQSAAIQPLVSCPRLVLLNLQGN-SLCQEEG 550 (567)
T ss_dssp CCCSSSTTGGGGGCTTCCEEECTTS-GGGGSSS
T ss_pred CCCCCCCcHHHhcCCCCCEEEecCC-cCCCCcc
Confidence 55555 455555555555555555 4544443
No 127
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.27 E-value=9.4e-12 Score=128.44 Aligned_cols=150 Identities=15% Similarity=0.093 Sum_probs=98.5
Q ss_pred CceEEeccCCCCCcCCCc--cCCCCCceEEEecCCCCCCccchHHhcCCCCCcE-EEccCCCCCCC-ccccccCCCcceE
Q 047163 478 GPIAISLPHRDIQELPER--LQCPNLQLFLFFGKGYGPMQISDLFFEGTKELKD-LSLTRIPFSSL-PSSLGSLINLGTL 553 (658)
Q Consensus 478 ~~~~l~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~-L~l~~~~~~~l-p~~i~~l~~L~~L 553 (658)
+++.|.+++|.+..+|.. ..+++|+.|++++|. ....++...|.+++.+.. +.+++|.+..+ |..+..+++|++|
T Consensus 31 ~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~-i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L 109 (350)
T 4ay9_X 31 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQND-VLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL 109 (350)
T ss_dssp TCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCT-TCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEE
T ss_pred CCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCC-CCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccc
Confidence 788999999999888864 378999999999986 234456666677766654 55666777766 3456777888888
Q ss_pred EccCCCCCCch--hh-------------------------hcc-CCCcEEEccCccCCccchhhcCCCCCcEEcccCccc
Q 047163 554 CLEDCPRNDIA--IL-------------------------RQL-KKLEILRLRHSYTERLPLEIGQLTRLRLLDLSNCWR 605 (658)
Q Consensus 554 ~L~~~~~~~l~--~~-------------------------~~l-~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~ 605 (658)
++++|.+..++ .+ ..+ ..|++|++++|.+..+|..+....+|+.|++.++..
T Consensus 110 ~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~ 189 (350)
T 4ay9_X 110 LISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNN 189 (350)
T ss_dssp EEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTT
T ss_pred cccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCc
Confidence 88777655431 11 222 235556666666666665555556666666654335
Q ss_pred ccccChhhhcCCCCCcEEEcccC
Q 047163 606 LKVIAPNVISKLSRLEELYMGNS 628 (658)
Q Consensus 606 l~~~~~~~i~~l~~L~~L~l~~~ 628 (658)
++.+|+..+.++++|++|++++|
T Consensus 190 l~~i~~~~f~~l~~L~~LdLs~N 212 (350)
T 4ay9_X 190 LEELPNDVFHGASGPVILDISRT 212 (350)
T ss_dssp CCCCCTTTTTTEECCSEEECTTS
T ss_pred ccCCCHHHhccCcccchhhcCCC
Confidence 66666655566666666666663
No 128
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.27 E-value=1.5e-11 Score=134.72 Aligned_cols=121 Identities=23% Similarity=0.241 Sum_probs=105.4
Q ss_pred CCcEEEccCCCCCCCccccccCCCcceEEccCCCCCCc-hhhhccCCCcEEEccCccCCccchhhcCCCCCcEEcccCcc
Q 047163 526 ELKDLSLTRIPFSSLPSSLGSLINLGTLCLEDCPRNDI-AILRQLKKLEILRLRHSYTERLPLEIGQLTRLRLLDLSNCW 604 (658)
Q Consensus 526 ~L~~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~l-~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~ 604 (658)
.|++|++++|.+..+|. ++.+++|++|+|++|.+..+ ..++.+++|++|+|++|.+..+| .++++++|++|++++|
T Consensus 442 ~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N- 518 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNN- 518 (567)
T ss_dssp TCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSS-
T ss_pred CceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCC-
Confidence 58999999999999987 99999999999999999988 78999999999999999999999 7999999999999999
Q ss_pred cccccC-hhhhcCCCCCcEEEcccCCCCcccccCCCc---cchhhcCCCCcccc
Q 047163 605 RLKVIA-PNVISKLSRLEELYMGNSFPKWDKVEGGSN---ASLAELKGLSKLDT 654 (658)
Q Consensus 605 ~l~~~~-~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~---~~l~~l~~L~~L~l 654 (658)
.++.++ |..++.+++|++|++++| .+++..| ..+..+++|+.|++
T Consensus 519 ~l~~~~~p~~l~~l~~L~~L~L~~N-----~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 519 RLQQSAAIQPLVSCPRLVLLNLQGN-----SLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp CCCSSSTTGGGGGCTTCCEEECTTS-----GGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCCCCcHHHhcCCCCCEEEecCC-----cCCCCccHHHHHHHHCcccCccCC
Confidence 899885 555999999999999995 3665433 23455889988864
No 129
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.25 E-value=8.3e-12 Score=129.51 Aligned_cols=148 Identities=12% Similarity=0.126 Sum_probs=72.7
Q ss_pred CceEEeccCCCCCcCCC-----c-cCCC-CCceEEEecCCCCCCccchHHhcC-----CCCCcEEEccCCCCCCCc-cc-
Q 047163 478 GPIAISLPHRDIQELPE-----R-LQCP-NLQLFLFFGKGYGPMQISDLFFEG-----TKELKDLSLTRIPFSSLP-SS- 543 (658)
Q Consensus 478 ~~~~l~l~~~~~~~~~~-----~-~~~~-~L~~L~l~~~~~~~~~~~~~~~~~-----~~~L~~L~l~~~~~~~lp-~~- 543 (658)
+++++.+++|.+...+. . ..++ +|+.|++++|.. .......+.. .++|++|++++|.+...+ ..
T Consensus 23 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l--~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l 100 (362)
T 3goz_A 23 GVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSL--GFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDEL 100 (362)
T ss_dssp TCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCG--GGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHH
T ss_pred CceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCC--CHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHH
Confidence 36666666666655442 1 1445 566666666642 2221111222 156666666666655332 22
Q ss_pred ---cccC-CCcceEEccCCCCCCc--hh----hhc-cCCCcEEEccCccCC-----ccchhhcCCC-CCcEEcccCcccc
Q 047163 544 ---LGSL-INLGTLCLEDCPRNDI--AI----LRQ-LKKLEILRLRHSYTE-----RLPLEIGQLT-RLRLLDLSNCWRL 606 (658)
Q Consensus 544 ---i~~l-~~L~~L~L~~~~~~~l--~~----~~~-l~~L~~L~l~~~~~~-----~lp~~~~~l~-~L~~L~l~~~~~l 606 (658)
+..+ ++|++|+|++|.+... .. +.. ..+|++|++++|.++ .++..+..++ +|++|++++| .+
T Consensus 101 ~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n-~l 179 (362)
T 3goz_A 101 VKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGN-NL 179 (362)
T ss_dssp HHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTS-CG
T ss_pred HHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCC-CC
Confidence 2233 5666666666655443 22 222 135666666666554 3344444444 5666666666 55
Q ss_pred cccChhh----hcCC-CCCcEEEcccC
Q 047163 607 KVIAPNV----ISKL-SRLEELYMGNS 628 (658)
Q Consensus 607 ~~~~~~~----i~~l-~~L~~L~l~~~ 628 (658)
+...+.. +..+ ++|++|++++|
T Consensus 180 ~~~~~~~l~~~l~~~~~~L~~L~Ls~N 206 (362)
T 3goz_A 180 ASKNCAELAKFLASIPASVTSLDLSAN 206 (362)
T ss_dssp GGSCHHHHHHHHHTSCTTCCEEECTTS
T ss_pred chhhHHHHHHHHHhCCCCCCEEECCCC
Confidence 5444322 2233 35666666653
No 130
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.23 E-value=7.2e-11 Score=108.87 Aligned_cols=129 Identities=19% Similarity=0.274 Sum_probs=109.2
Q ss_pred ceEEeccCCCCCcCCCccCCCCCceEEEecCCCCCCccchHHhcCCCCCcEEEccCCCCCCCccc-cccCCCcceEEccC
Q 047163 479 PIAISLPHRDIQELPERLQCPNLQLFLFFGKGYGPMQISDLFFEGTKELKDLSLTRIPFSSLPSS-LGSLINLGTLCLED 557 (658)
Q Consensus 479 ~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~-i~~l~~L~~L~L~~ 557 (658)
.+.+.+.++.+..+|... .++|+.|.+.+|. ...++...+..+++|++|++++|.+..+|.. +..+++|++|++++
T Consensus 9 ~~~l~~~~~~l~~~p~~~-~~~l~~L~l~~n~--l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGI-PSSATRLELESNK--LQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCSSCCSSCCTTC-CTTCSEEECCSSC--CCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCCccCCCCC-CCCCcEEEeCCCc--ccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 456778888888887544 4799999999997 4467777788999999999999999988765 68899999999999
Q ss_pred CCCCCc--hhhhccCCCcEEEccCccCCccchh-hcCCCCCcEEcccCcccccccCh
Q 047163 558 CPRNDI--AILRQLKKLEILRLRHSYTERLPLE-IGQLTRLRLLDLSNCWRLKVIAP 611 (658)
Q Consensus 558 ~~~~~l--~~~~~l~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~~~~l~~~~~ 611 (658)
|.+..+ ..+..+++|++|++++|.+..+|.. +..+++|++|++++| .+...++
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N-~~~~~~~ 141 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN-PWDCSCP 141 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS-CBCCCHH
T ss_pred CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCC-CeeccCc
Confidence 999888 3478999999999999999999876 578999999999999 6665544
No 131
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.21 E-value=8.5e-13 Score=124.40 Aligned_cols=145 Identities=22% Similarity=0.249 Sum_probs=119.7
Q ss_pred CCceEEEecCCCCCCccchHHhcCCCCCcEEEccCCCCCCCccccccCCCcceEEccCCCCCCc-hhhhccCCCcEEEcc
Q 047163 500 NLQLFLFFGKGYGPMQISDLFFEGTKELKDLSLTRIPFSSLPSSLGSLINLGTLCLEDCPRNDI-AILRQLKKLEILRLR 578 (658)
Q Consensus 500 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~l-~~~~~l~~L~~L~l~ 578 (658)
.++...+.++......+|. .+..+++|++|++++|.+..+| .+..+++|++|++++|.+..+ ..+..+++|++|+++
T Consensus 24 ~l~~~~l~~~~~~l~~l~~-~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~ 101 (198)
T 1ds9_A 24 EAEKVELHGMIPPIEKMDA-TLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWIS 101 (198)
T ss_dssp TCSEEECCBCCTTCCCCHH-HHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEE
T ss_pred chheeEeccccCcHhhhhH-HHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECc
Confidence 4555556555323445555 4788999999999999999998 899999999999999998888 566778999999999
Q ss_pred CccCCccchhhcCCCCCcEEcccCcccccccCh-hhhcCCCCCcEEEcccCCCCcccccCCCcc----------chhhcC
Q 047163 579 HSYTERLPLEIGQLTRLRLLDLSNCWRLKVIAP-NVISKLSRLEELYMGNSFPKWDKVEGGSNA----------SLAELK 647 (658)
Q Consensus 579 ~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~~~~-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~----------~l~~l~ 647 (658)
+|.+..+| .++++++|++|++++| .++.++. ..+..+++|++|++++|. +.+..|. .+..++
T Consensus 102 ~N~l~~l~-~~~~l~~L~~L~l~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~-----l~~~~~~~~~~~~~~~~~~~~l~ 174 (198)
T 1ds9_A 102 YNQIASLS-GIEKLVNLRVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGNP-----LYNDYKENNATSEYRIEVVKRLP 174 (198)
T ss_dssp EEECCCHH-HHHHHHHSSEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSCH-----HHHHHHTTTTHHHHHHHHHHHCS
T ss_pred CCcCCcCC-ccccCCCCCEEECCCC-cCCchhHHHHHhcCCCCCEEEecCCc-----cccccccccchHHHHHHHHHhCC
Confidence 99999988 5899999999999999 8888765 458999999999999853 5554443 378899
Q ss_pred CCCccc
Q 047163 648 GLSKLD 653 (658)
Q Consensus 648 ~L~~L~ 653 (658)
+|+.|+
T Consensus 175 ~L~~Ld 180 (198)
T 1ds9_A 175 NLKKLD 180 (198)
T ss_dssp SCSEEC
T ss_pred CcEEEC
Confidence 999987
No 132
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.21 E-value=2.6e-12 Score=138.05 Aligned_cols=175 Identities=19% Similarity=0.143 Sum_probs=117.9
Q ss_pred CceEEeccCCCCCcC-----CCcc-CCCCCceEEEecCCCCCCc---cchHHhcCCCCCcEEEccCCCCCC-----Cccc
Q 047163 478 GPIAISLPHRDIQEL-----PERL-QCPNLQLFLFFGKGYGPMQ---ISDLFFEGTKELKDLSLTRIPFSS-----LPSS 543 (658)
Q Consensus 478 ~~~~l~l~~~~~~~~-----~~~~-~~~~L~~L~l~~~~~~~~~---~~~~~~~~~~~L~~L~l~~~~~~~-----lp~~ 543 (658)
+++++.+.+|.+... +... .+++|+.|++++|...... +.+.++..+++|++|++++|.+.. +|..
T Consensus 200 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 279 (461)
T 1z7x_W 200 QLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRV 279 (461)
T ss_dssp CCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHH
T ss_pred CceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHH
Confidence 677888888877642 2222 5778888888887522111 223334467788888888888775 6777
Q ss_pred cccCCCcceEEccCCCCCCc--hhhhc-----cCCCcEEEccCccCCc-----cchhhcCCCCCcEEcccCcccccccCh
Q 047163 544 LGSLINLGTLCLEDCPRNDI--AILRQ-----LKKLEILRLRHSYTER-----LPLEIGQLTRLRLLDLSNCWRLKVIAP 611 (658)
Q Consensus 544 i~~l~~L~~L~L~~~~~~~l--~~~~~-----l~~L~~L~l~~~~~~~-----lp~~~~~l~~L~~L~l~~~~~l~~~~~ 611 (658)
+..+++|++|++++|.+... ..+.. .++|++|++++|.+.. +|..+..+++|++|++++| .++...+
T Consensus 280 l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~ 358 (461)
T 1z7x_W 280 LRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNN-RLEDAGV 358 (461)
T ss_dssp HHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSS-BCHHHHH
T ss_pred HhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCC-ccccccH
Confidence 77788888888888876543 22322 2578888888886654 4566777788888888888 6665543
Q ss_pred hhhcC-----CCCCcEEEcccCCCCcccccC----CCccchhhcCCCCccccCCCC
Q 047163 612 NVISK-----LSRLEELYMGNSFPKWDKVEG----GSNASLAELKGLSKLDTGHNR 658 (658)
Q Consensus 612 ~~i~~-----l~~L~~L~l~~~~~~~~~~~~----~~~~~l~~l~~L~~L~l~~N~ 658 (658)
..+.. .++|++|++++|. +++ .+|..+..+++|++|++++|+
T Consensus 359 ~~l~~~l~~~~~~L~~L~L~~n~-----i~~~~~~~l~~~l~~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 359 RELCQGLGQPGSVLRVLWLADCD-----VSDSSCSSLAATLLANHSLRELDLSNNC 409 (461)
T ss_dssp HHHHHHHTSTTCCCCEEECTTSC-----CCHHHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred HHHHHHHcCCCCceEEEECCCCC-----CChhhHHHHHHHHHhCCCccEEECCCCC
Confidence 33332 5688888888754 443 556677778888888888774
No 133
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=99.19 E-value=5.8e-11 Score=99.62 Aligned_cols=64 Identities=11% Similarity=0.164 Sum_probs=56.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhcC-CcchHHHHHHHHHHHHHHHHHHHHHHhhHHHh
Q 047163 32 YQSYIEELKDQVKQLEHKRERVKIPVHHATQQG-NEIYKDVADWLNSVKEFAQGAAKSIIDDEDRA 96 (658)
Q Consensus 32 ~~~~~~~~~~~~~~l~~~l~~i~~~l~~a~~~~-~~~~~~~~~Wl~~l~~~~~~~~ed~ld~~~~~ 96 (658)
.+..+.++++++++|+++|..|+++|.+|+++. +..+++++.|+.+||+++||+ ||+||+|...
T Consensus 17 E~~l~~gv~~~i~~Lk~eL~~m~a~L~da~~~~~~~~d~~vk~W~~~vrdlaYD~-ED~iD~f~~~ 81 (115)
T 3qfl_A 17 EFKLHKGVKKNIEDLGKELESMNAALIKIGEVPREQLDSQDKLWADEVRELSYVI-EDVVDKFLVQ 81 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHH-HHHHHHHHHH
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 345567899999999999999999999999873 346899999999999999999 9999998543
No 134
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.17 E-value=5.8e-10 Score=117.76 Aligned_cols=274 Identities=14% Similarity=0.106 Sum_probs=156.0
Q ss_pred ccccchHHHHHHHHHHh-c----c--CCccEEEE--EcCCCChHHHHHHHHHHHhhhc---cCCC-EEEEEEEcCCCCHH
Q 047163 155 EAFDSKMEVFQDVMEAL-K----D--DKLNIIGV--YGMGGVGKTTLVKQVAKQVMED---KLFD-KVVMAEVTQNPDHH 221 (658)
Q Consensus 155 ~~~~gr~~~~~~l~~~l-~----~--~~~~vi~I--~G~gGiGKTtLa~~v~~~~~~~---~~F~-~~~wv~v~~~~~~~ 221 (658)
..++||+.+++.|.+++ . . ...+.+.| +|++|+||||||+.+++..... ..|+ .++|+++....+..
T Consensus 22 ~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (412)
T 1w5s_A 22 PELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLY 101 (412)
T ss_dssp SSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHH
T ss_pred CCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCHH
Confidence 56899999999999888 4 2 24556777 9999999999999999886542 1233 46788877777888
Q ss_pred HHHHHHHHhcCCCCCC-CCCHHHHHHHHHHHHh-cCCeEEEEEecCCcccC--------cccccCcc---c--C--CCc-
Q 047163 222 KIQDKLAFGLGMEFGF-NENMFQRASRLCERLK-KEKRLLIILDNIWIELE--------FDKIGIPS---G--N--VEK- 283 (658)
Q Consensus 222 ~~~~~i~~~l~~~~~~-~~~~~~~~~~l~~~l~-~~k~~LlVlDdv~~~~~--------~~~l~~~~---~--~--~~~- 283 (658)
.+...++..++..... ..+..+....+.+.+. .+++++|||||++.... +..+...+ + . ...
T Consensus 102 ~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v~ 181 (412)
T 1w5s_A 102 TILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRIG 181 (412)
T ss_dssp HHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBEE
T ss_pred HHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceEE
Confidence 9999999988765321 2233444556666654 35799999999987421 11111111 1 0 000
Q ss_pred ----ccc--------------------------ccchhhHHhhhccC--------CccHHHHHHHHHcC------CchhH
Q 047163 284 ----ERT--------------------------DARSRCTIILTKTS--------TIQPIADEIVEICG------GLPVA 319 (658)
Q Consensus 284 ----~~~--------------------------~~~~~~~~Lf~~~~--------~~~~~~~~i~~~c~------glPLa 319 (658)
+.. ....+.+++|.+.. -.++....+++.|+ |.|..
T Consensus 182 lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~G~p~~ 261 (412)
T 1w5s_A 182 FLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKGGDGSARR 261 (412)
T ss_dssp EEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHCGGGTSCCCHHH
T ss_pred EEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHhccCCCcHHH
Confidence 000 00111555554332 23467788999999 99976
Q ss_pred HHHHHHHh-c-----cC---ChHHHHHHHHHHhcCCCCCCCchhHHHHHHHHhhHhcCCchhHHHHHHHhcccc--cCCc
Q 047163 320 VTTVANAL-K-----SK---SLDIWKDALNQLRSSNPREIDGMDKKVYTSIELSYNLLASKEAKSLFRLCGLYN--EGHA 388 (658)
Q Consensus 320 i~~~g~~L-~-----~~---~~~~w~~~l~~l~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~~fl~~~~fp--~~~~ 388 (658)
+..+.... . .. +.+.+..++..... ...+.-++..||++ .+.++..++.+. .+..
T Consensus 262 ~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~-------------~~~~~~~l~~l~~~-~~~~l~aia~l~~~~~~~ 327 (412)
T 1w5s_A 262 AIVALKMACEMAEAMGRDSLSEDLVRKAVSENEA-------------ASIQTHELEALSIH-ELIILRLIAEATLGGMEW 327 (412)
T ss_dssp HHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC-------------------CCSSSSSCHH-HHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc-------------cchHHHHHHcCCHH-HHHHHHHHHHHHhcCCCC
Confidence 55544321 1 11 23344433332100 22344566789887 788888787653 2234
Q ss_pred ccHHHHHHHHhhh--cccccccCHHHHHHHHHHHHHHHHHccccccC----CCCCceeecHHH
Q 047163 389 IQVASILRYGMGW--GLLENVYTLEEARSRVHRLIDNLKSSCLLLDG----DAKDEAKMYDVI 445 (658)
Q Consensus 389 i~~~~li~~w~a~--g~i~~~~~~~~~~~~~~~~~~~L~~~~ll~~~----~~~~~~~~h~lv 445 (658)
++...+...+... ...... .. ....+..+++.|...+++... +..+.|++|.+.
T Consensus 328 ~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~l~~L~~~gli~~~~~~~~~~g~~~~~~l~ 387 (412)
T 1w5s_A 328 INAGLLRQRYEDASLTMYNVK-PR--GYTQYHIYLKHLTSLGLVDAKPSGRGMRGRTTLFRLA 387 (412)
T ss_dssp BCHHHHHHHHHHHHHHHSCCC-CC--CHHHHHHHHHHHHHTTSEEEECC-------CCEEEEC
T ss_pred ccHHHHHHHHHHHHHhhcCCC-CC--CHHHHHHHHHHHHhCCCEEeecccCCCCCceeEEEeC
Confidence 6666555444211 111100 00 112345678899999998653 223446555544
No 135
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.16 E-value=8.8e-10 Score=113.83 Aligned_cols=262 Identities=13% Similarity=0.122 Sum_probs=140.6
Q ss_pred cccccccchHHHHHHHHHHhccCCccEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCC-----CCHHHHHHH
Q 047163 152 KDFEAFDSKMEVFQDVMEALKDDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQN-----PDHHKIQDK 226 (658)
Q Consensus 152 ~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~-----~~~~~~~~~ 226 (658)
..+..|+||+++++.|.+ +.. +++.|+|++|+|||||++.+.+.... ..+|+++... .+.......
T Consensus 10 ~~~~~~~gR~~el~~L~~-l~~---~~v~i~G~~G~GKT~L~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~ 80 (357)
T 2fna_A 10 DNRKDFFDREKEIEKLKG-LRA---PITLVLGLRRTGKSSIIKIGINELNL-----PYIYLDLRKFEERNYISYKDFLLE 80 (357)
T ss_dssp CSGGGSCCCHHHHHHHHH-TCS---SEEEEEESTTSSHHHHHHHHHHHHTC-----CEEEEEGGGGTTCSCCCHHHHHHH
T ss_pred CCHHHhcChHHHHHHHHH-hcC---CcEEEECCCCCCHHHHHHHHHHhcCC-----CEEEEEchhhccccCCCHHHHHHH
Confidence 345678999999999999 755 69999999999999999999987642 2578887642 344444444
Q ss_pred HHHhcC--------------C----CCCC---CCC----HHHHHHHHHHHHhc-C-CeEEEEEecCCccc-----Ccccc
Q 047163 227 LAFGLG--------------M----EFGF---NEN----MFQRASRLCERLKK-E-KRLLIILDNIWIEL-----EFDKI 274 (658)
Q Consensus 227 i~~~l~--------------~----~~~~---~~~----~~~~~~~l~~~l~~-~-k~~LlVlDdv~~~~-----~~~~l 274 (658)
+...+. . +... ... .......+.+.+.. . ++++|||||++... +|..+
T Consensus 81 l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~~~~~~~~ 160 (357)
T 2fna_A 81 LQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLRGVNLLPA 160 (357)
T ss_dssp HHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCTTCCCHHH
T ss_pred HHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccCchhHHHH
Confidence 433221 0 0000 000 01112334444432 1 38999999997632 22111
Q ss_pred cCcc----cCC---Ccc-----------------------------ccccchhhHHhhhccC-----CccHHHHHHHHHc
Q 047163 275 GIPS----GNV---EKE-----------------------------RTDARSRCTIILTKTS-----TIQPIADEIVEIC 313 (658)
Q Consensus 275 ~~~~----~~~---~~~-----------------------------~~~~~~~~~~Lf~~~~-----~~~~~~~~i~~~c 313 (658)
...+ +.. ..| ......++.+++.+.. ...+. ..|...|
T Consensus 161 l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~-~~i~~~t 239 (357)
T 2fna_A 161 LAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFKDY-EVVYEKI 239 (357)
T ss_dssp HHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCCCH-HHHHHHH
T ss_pred HHHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCCcH-HHHHHHh
Confidence 0000 000 000 0000111444443321 22223 7899999
Q ss_pred CCchhHHHHHHHHhccC-ChHHHHHH-HHHHhcCCCCCCCchhHHHHHHHH-hhH--hcCCchhHHHHHHHhcccccCCc
Q 047163 314 GGLPVAVTTVANALKSK-SLDIWKDA-LNQLRSSNPREIDGMDKKVYTSIE-LSY--NLLASKEAKSLFRLCGLYNEGHA 388 (658)
Q Consensus 314 ~glPLai~~~g~~L~~~-~~~~w~~~-l~~l~~~~~~~~~~~~~~i~~~l~-~sy--~~L~~~~~k~~fl~~~~fp~~~~ 388 (658)
+|.|+++..++..+... +...|..- .+.. ...+...+. +.+ ..|++. .+..+..+|.-+
T Consensus 240 ~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~~~l~~~-~~~~l~~la~g~---- 303 (357)
T 2fna_A 240 GGIPGWLTYFGFIYLDNKNLDFAINQTLEYA-----------KKLILKEFENFLHGREIARKR-YLNIMRTLSKCG---- 303 (357)
T ss_dssp CSCHHHHHHHHHHHHHHCCHHHHHHHHHHHH-----------HHHHHHHHHHHHTTCGGGHHH-HHHHHHHHTTCB----
T ss_pred CCCHHHHHHHHHHHccccchHHHHHHHHHHH-----------HHHHHHHHHHHhhccccccHH-HHHHHHHHHcCC----
Confidence 99999999998876432 33333211 1110 011111222 111 157776 788888888721
Q ss_pred ccHHHHHHHHh-hhcccccccCHHHHHHHHHHHHHHHHHccccccCCCCCcee-ecHHHHHHH
Q 047163 389 IQVASILRYGM-GWGLLENVYTLEEARSRVHRLIDNLKSSCLLLDGDAKDEAK-MYDVIHVVA 449 (658)
Q Consensus 389 i~~~~li~~w~-a~g~i~~~~~~~~~~~~~~~~~~~L~~~~ll~~~~~~~~~~-~h~lv~~~~ 449 (658)
+...+....- ..|. ..+ ...+..+++.|.+.+++...+ ..|+ .|++++++.
T Consensus 304 -~~~~l~~~~~~~~g~---~~~----~~~~~~~L~~L~~~gli~~~~--~~y~f~~~~~~~~l 356 (357)
T 2fna_A 304 -KWSDVKRALELEEGI---EIS----DSEIYNYLTQLTKHSWIIKEG--EKYCPSEPLISLAF 356 (357)
T ss_dssp -CHHHHHHHHHHHHCS---CCC----HHHHHHHHHHHHHTTSEEESS--SCEEESSHHHHHHT
T ss_pred -CHHHHHHHHHHhcCC---CCC----HHHHHHHHHHHHhCCCEEecC--CEEEecCHHHHHhh
Confidence 4444432110 1120 001 123455788899999987653 4577 478888764
No 136
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.15 E-value=1.5e-11 Score=132.19 Aligned_cols=35 Identities=31% Similarity=0.358 Sum_probs=16.7
Q ss_pred CCcEEEccCCCCC-----CCccccccCCCcceEEccCCCC
Q 047163 526 ELKDLSLTRIPFS-----SLPSSLGSLINLGTLCLEDCPR 560 (658)
Q Consensus 526 ~L~~L~l~~~~~~-----~lp~~i~~l~~L~~L~L~~~~~ 560 (658)
+|++|++++|.+. .+|..+..+++|++|++++|.+
T Consensus 86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i 125 (461)
T 1z7x_W 86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLL 125 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBC
T ss_pred ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcC
Confidence 3555555555444 2344444445555555555443
No 137
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.14 E-value=1.6e-10 Score=105.62 Aligned_cols=79 Identities=22% Similarity=0.278 Sum_probs=38.5
Q ss_pred CCCcEEEccCCCCCCC-ccccccCCCcceEEccCCCCCCc--hhhhccCCCcEEEccCccCCccch-hhcCCCCCcEEcc
Q 047163 525 KELKDLSLTRIPFSSL-PSSLGSLINLGTLCLEDCPRNDI--AILRQLKKLEILRLRHSYTERLPL-EIGQLTRLRLLDL 600 (658)
Q Consensus 525 ~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~L~~~~~~~l--~~~~~l~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l 600 (658)
++|++|+|++|.+..+ |..+..+++|++|+|++|.+..+ ..+..+++|++|+|++|.+..+|. .+.++++|++|++
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 109 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL 109 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEe
Confidence 4455555555555544 33344455555555555554444 123445555555555555554443 2444555555555
Q ss_pred cCc
Q 047163 601 SNC 603 (658)
Q Consensus 601 ~~~ 603 (658)
++|
T Consensus 110 ~~N 112 (170)
T 3g39_A 110 LNN 112 (170)
T ss_dssp CSS
T ss_pred CCC
Confidence 554
No 138
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.13 E-value=1.8e-10 Score=105.77 Aligned_cols=104 Identities=18% Similarity=0.222 Sum_probs=67.4
Q ss_pred ceEEEecCCCCCCccchHHhcCCCCCcEEEccCCCCCCC-ccccccCCCcceEEccCCCCCCc-h-hhhccCCCcEEEcc
Q 047163 502 QLFLFFGKGYGPMQISDLFFEGTKELKDLSLTRIPFSSL-PSSLGSLINLGTLCLEDCPRNDI-A-ILRQLKKLEILRLR 578 (658)
Q Consensus 502 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~L~~~~~~~l-~-~~~~l~~L~~L~l~ 578 (658)
+.+++.+|. ...+|..+ .++|++|+|++|.+..+ |..+..+++|++|+|++|.+..+ + .+..+++|++|+|+
T Consensus 15 ~~l~~~~n~--l~~iP~~~---~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~ 89 (174)
T 2r9u_A 15 TLVNCQNIR--LASVPAGI---PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLN 89 (174)
T ss_dssp SEEECCSSC--CSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred cEEEeCCCC--CCccCCCc---CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECC
Confidence 456666664 34455433 26677777777777766 44566777777777777777666 2 35667777777777
Q ss_pred CccCCccchh-hcCCCCCcEEcccCcccccccCh
Q 047163 579 HSYTERLPLE-IGQLTRLRLLDLSNCWRLKVIAP 611 (658)
Q Consensus 579 ~~~~~~lp~~-~~~l~~L~~L~l~~~~~l~~~~~ 611 (658)
+|.+..+|.. +.++++|++|++++| .+...++
T Consensus 90 ~N~l~~l~~~~~~~l~~L~~L~L~~N-~~~c~~~ 122 (174)
T 2r9u_A 90 DNHLKSIPRGAFDNLKSLTHIYLYNN-PWDCECR 122 (174)
T ss_dssp SSCCCCCCTTTTTTCTTCSEEECCSS-CBCTTBG
T ss_pred CCccceeCHHHhccccCCCEEEeCCC-Ccccccc
Confidence 7777777654 667777777777777 5555443
No 139
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.13 E-value=6e-11 Score=123.01 Aligned_cols=169 Identities=15% Similarity=0.151 Sum_probs=122.8
Q ss_pred EeccCCCCCc-CCCccCC-CCCceEEEecCCCCCCccch----HHhcCCC-CCcEEEccCCCCCCC-ccccccC-----C
Q 047163 482 ISLPHRDIQE-LPERLQC-PNLQLFLFFGKGYGPMQISD----LFFEGTK-ELKDLSLTRIPFSSL-PSSLGSL-----I 548 (658)
Q Consensus 482 l~l~~~~~~~-~~~~~~~-~~L~~L~l~~~~~~~~~~~~----~~~~~~~-~L~~L~l~~~~~~~l-p~~i~~l-----~ 548 (658)
..++.+.+.. +|..... ++|+.|++++|. ....+. ..+..++ +|++|++++|.+... +..+..+ +
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~--l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~ 80 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNN--LYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPA 80 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSC--GGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCT
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCC--CChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCC
Confidence 3455666654 3444444 459999999997 444444 5577888 999999999999854 5556664 8
Q ss_pred CcceEEccCCCCCCc--hh----hhcc-CCCcEEEccCccCCccch-h----hcC-CCCCcEEcccCcccccccChh---
Q 047163 549 NLGTLCLEDCPRNDI--AI----LRQL-KKLEILRLRHSYTERLPL-E----IGQ-LTRLRLLDLSNCWRLKVIAPN--- 612 (658)
Q Consensus 549 ~L~~L~L~~~~~~~l--~~----~~~l-~~L~~L~l~~~~~~~lp~-~----~~~-l~~L~~L~l~~~~~l~~~~~~--- 612 (658)
+|++|+|++|.+... .. +..+ ++|++|++++|.+...+. . +.. .++|++|++++| .++.....
T Consensus 81 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~ 159 (362)
T 3goz_A 81 NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGN-DLGIKSSDELI 159 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTS-CGGGSCHHHHH
T ss_pred CccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCC-cCCHHHHHHHH
Confidence 999999999998754 33 4455 899999999998887753 3 334 369999999999 77743322
Q ss_pred -hhcCCC-CCcEEEcccCCCCcccccCCCccchhhc-----CCCCccccCCCC
Q 047163 613 -VISKLS-RLEELYMGNSFPKWDKVEGGSNASLAEL-----KGLSKLDTGHNR 658 (658)
Q Consensus 613 -~i~~l~-~L~~L~l~~~~~~~~~~~~~~~~~l~~l-----~~L~~L~l~~N~ 658 (658)
.+..++ +|++|++++|. +++..+..+... ++|+.|++++|+
T Consensus 160 ~~l~~~~~~L~~L~Ls~n~-----l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~ 207 (362)
T 3goz_A 160 QILAAIPANVNSLNLRGNN-----LASKNCAELAKFLASIPASVTSLDLSANL 207 (362)
T ss_dssp HHHHTSCTTCCEEECTTSC-----GGGSCHHHHHHHHHTSCTTCCEEECTTSC
T ss_pred HHHhcCCccccEeeecCCC-----CchhhHHHHHHHHHhCCCCCCEEECCCCC
Confidence 245665 99999999964 666666554443 588888888874
No 140
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.12 E-value=1.4e-10 Score=119.67 Aligned_cols=168 Identities=18% Similarity=0.211 Sum_probs=117.6
Q ss_pred CceEEeccCCCCC-cCCCc--cCCCCCceE-EEecCCCCCCccchHHhcCCCCCcEEEccCCCCCCCcc-----------
Q 047163 478 GPIAISLPHRDIQ-ELPER--LQCPNLQLF-LFFGKGYGPMQISDLFFEGTKELKDLSLTRIPFSSLPS----------- 542 (658)
Q Consensus 478 ~~~~l~l~~~~~~-~~~~~--~~~~~L~~L-~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~----------- 542 (658)
+++.|.+++|.+. .++.. ..++++..+ .+.+|. ...+++..|..+++|++|++++|.+..+|.
T Consensus 55 ~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~--l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~ 132 (350)
T 4ay9_X 55 DLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANN--LLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVL 132 (350)
T ss_dssp TCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETT--CCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEE
T ss_pred CCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCc--ccccCchhhhhccccccccccccccccCCchhhcccchhhh
Confidence 6778888887763 34442 256666654 334443 455666667777777777777776653332
Q ss_pred ---------------ccccC-CCcceEEccCCCCCCc-hhhhccCCCcEEEccC-ccCCccch-hhcCCCCCcEEcccCc
Q 047163 543 ---------------SLGSL-INLGTLCLEDCPRNDI-AILRQLKKLEILRLRH-SYTERLPL-EIGQLTRLRLLDLSNC 603 (658)
Q Consensus 543 ---------------~i~~l-~~L~~L~L~~~~~~~l-~~~~~l~~L~~L~l~~-~~~~~lp~-~~~~l~~L~~L~l~~~ 603 (658)
.+..+ ..+++|+|++|.+..+ +......+|+.|++.+ |.++.+|. .+.++++|+.|++++|
T Consensus 133 l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N 212 (350)
T 4ay9_X 133 LDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRT 212 (350)
T ss_dssp EEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTS
T ss_pred hhhccccccccccccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCC
Confidence 11222 3578899999998888 5666778899999975 68999986 4689999999999999
Q ss_pred ccccccChhhhcCCCCCcEEEcccCCCCcccccCCCccchhhcCCCCccccCCC
Q 047163 604 WRLKVIAPNVISKLSRLEELYMGNSFPKWDKVEGGSNASLAELKGLSKLDTGHN 657 (658)
Q Consensus 604 ~~l~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~N 657 (658)
.++.+|+.. +.+|+.|.+.++. ++ ..+| .+.++++|+.+++.++
T Consensus 213 -~l~~lp~~~---~~~L~~L~~l~~~----~l-~~lP-~l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 213 -RIHSLPSYG---LENLKKLRARSTY----NL-KKLP-TLEKLVALMEASLTYP 256 (350)
T ss_dssp -CCCCCCSSS---CTTCCEEECTTCT----TC-CCCC-CTTTCCSCCEEECSCH
T ss_pred -CcCccChhh---hccchHhhhccCC----Cc-CcCC-CchhCcChhhCcCCCC
Confidence 899999764 5566666665542 12 3566 5888999999988653
No 141
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.01 E-value=8.4e-10 Score=100.83 Aligned_cols=101 Identities=22% Similarity=0.327 Sum_probs=92.2
Q ss_pred CCcEEEccCCCCCCCccccccCCCcceEEccCCCCCCc--hhhhccCCCcEEEccCccCCccchh-hcCCCCCcEEcccC
Q 047163 526 ELKDLSLTRIPFSSLPSSLGSLINLGTLCLEDCPRNDI--AILRQLKKLEILRLRHSYTERLPLE-IGQLTRLRLLDLSN 602 (658)
Q Consensus 526 ~L~~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~l--~~~~~l~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~ 602 (658)
..+.++++++.+..+|..+. ++|++|+|++|.+..+ ..+..+++|++|+|++|.+..+|.. +.++++|++|++++
T Consensus 10 ~~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp ETTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 46899999999999998764 8999999999999988 5689999999999999999999865 58999999999999
Q ss_pred cccccccChhhhcCCCCCcEEEcccCC
Q 047163 603 CWRLKVIAPNVISKLSRLEELYMGNSF 629 (658)
Q Consensus 603 ~~~l~~~~~~~i~~l~~L~~L~l~~~~ 629 (658)
| .++.+++..+.++++|++|++++|.
T Consensus 88 N-~l~~~~~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 88 N-QLKSIPRGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp S-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred C-ccCEeCHHHhcCCCCCCEEEeCCCC
Confidence 9 8999999888999999999999965
No 142
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.98 E-value=1.3e-09 Score=100.03 Aligned_cols=100 Identities=22% Similarity=0.353 Sum_probs=91.7
Q ss_pred CcEEEccCCCCCCCccccccCCCcceEEccCCCCCCc--hhhhccCCCcEEEccCccCCccchh-hcCCCCCcEEcccCc
Q 047163 527 LKDLSLTRIPFSSLPSSLGSLINLGTLCLEDCPRNDI--AILRQLKKLEILRLRHSYTERLPLE-IGQLTRLRLLDLSNC 603 (658)
Q Consensus 527 L~~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~l--~~~~~l~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~~ 603 (658)
-+.++++++.+..+|..+. ++|++|+|++|.+..+ ..+..+++|++|+|++|.+..+|.. +.++++|++|++++|
T Consensus 14 ~~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 14 QTLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SSEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CcEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 4789999999999998775 8999999999999988 5789999999999999999999876 589999999999999
Q ss_pred ccccccChhhhcCCCCCcEEEcccCC
Q 047163 604 WRLKVIAPNVISKLSRLEELYMGNSF 629 (658)
Q Consensus 604 ~~l~~~~~~~i~~l~~L~~L~l~~~~ 629 (658)
.++.+|+..+..+++|++|++++|.
T Consensus 92 -~l~~l~~~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 92 -HLKSIPRGAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp -CCCCCCTTTTTTCTTCSEEECCSSC
T ss_pred -ccceeCHHHhccccCCCEEEeCCCC
Confidence 8999999878999999999999965
No 143
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=98.88 E-value=1.3e-07 Score=98.64 Aligned_cols=114 Identities=19% Similarity=0.286 Sum_probs=85.8
Q ss_pred ccccchHHHHHHHHHHhc----cCCccEEEEEcCCCChHHHHHHHHHHHhhhcc---CCC-EEEEEEEcCCCCHHHHHHH
Q 047163 155 EAFDSKMEVFQDVMEALK----DDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDK---LFD-KVVMAEVTQNPDHHKIQDK 226 (658)
Q Consensus 155 ~~~~gr~~~~~~l~~~l~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---~F~-~~~wv~v~~~~~~~~~~~~ 226 (658)
..++||+.+++.+..++. ....+.+.|+|++|+||||+|+.+++...... ... ..+|+++....+...+...
T Consensus 19 ~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 98 (387)
T 2v1u_A 19 DVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASA 98 (387)
T ss_dssp SCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHHH
Confidence 678999999999999884 34567899999999999999999998874321 112 4678888888888899999
Q ss_pred HHHhcCCCCCC-CCCHHHHHHHHHHHHh-cCCeEEEEEecCCcc
Q 047163 227 LAFGLGMEFGF-NENMFQRASRLCERLK-KEKRLLIILDNIWIE 268 (658)
Q Consensus 227 i~~~l~~~~~~-~~~~~~~~~~l~~~l~-~~k~~LlVlDdv~~~ 268 (658)
++..++..... ..+..+....+...+. .+++.+|||||++..
T Consensus 99 l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l 142 (387)
T 2v1u_A 99 IAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFL 142 (387)
T ss_dssp HHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHH
T ss_pred HHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhh
Confidence 99888764331 2234445566666664 356899999999864
No 144
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.81 E-value=1.1e-09 Score=113.49 Aligned_cols=162 Identities=15% Similarity=0.071 Sum_probs=114.8
Q ss_pred CceEEeccCCCCCcCC-----Ccc--CCCCCceEEEecCCCCCCccchHHhcCCCCCcEEEccCCCCCCC-----cccc-
Q 047163 478 GPIAISLPHRDIQELP-----ERL--QCPNLQLFLFFGKGYGPMQISDLFFEGTKELKDLSLTRIPFSSL-----PSSL- 544 (658)
Q Consensus 478 ~~~~l~l~~~~~~~~~-----~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l-----p~~i- 544 (658)
.++.+.+.+|.+.... ... ..++|+.|++++|..... -...+...+++|+.|+|++|.+... ...+
T Consensus 73 ~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~-~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 73 SLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPA-GLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHH-HHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHH-HHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 7899999999886422 111 346899999999973222 1223344567899999999998732 2222
Q ss_pred ccCCCcceEEccCCCCCCc------hhhhccCCCcEEEccCccCCc-----cchhhcCCCCCcEEcccCcccccccCh--
Q 047163 545 GSLINLGTLCLEDCPRNDI------AILRQLKKLEILRLRHSYTER-----LPLEIGQLTRLRLLDLSNCWRLKVIAP-- 611 (658)
Q Consensus 545 ~~l~~L~~L~L~~~~~~~l------~~~~~l~~L~~L~l~~~~~~~-----lp~~~~~l~~L~~L~l~~~~~l~~~~~-- 611 (658)
...++|++|+|++|.+... ..+...++|++|+|++|.++. ++..+...++|++|++++| .++....
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N-~i~~~g~~~ 230 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYN-GAGDTAALA 230 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSS-CCCHHHHHH
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCC-CCCHHHHHH
Confidence 2467899999999988652 455778899999999997754 3566778889999999999 7765432
Q ss_pred --hhhcCCCCCcEEEcccCCCCcccccCCCccchhhc
Q 047163 612 --NVISKLSRLEELYMGNSFPKWDKVEGGSNASLAEL 646 (658)
Q Consensus 612 --~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~l 646 (658)
..+...++|++|++++|. +++.....+..+
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~-----i~~~g~~~L~~~ 262 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNE-----LSSEGRQVLRDL 262 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSS-----CCHHHHHHHHHC
T ss_pred HHHHHHhCCCCCEEeccCCC-----CCHHHHHHHHHH
Confidence 224567899999999854 555555555544
No 145
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.80 E-value=7.8e-09 Score=105.45 Aligned_cols=38 Identities=18% Similarity=0.200 Sum_probs=25.0
Q ss_pred CCCCceEEEecCCCCCCccchHHhcCCCCCcEEEccCCCCC
Q 047163 498 CPNLQLFLFFGKGYGPMQISDLFFEGTKELKDLSLTRIPFS 538 (658)
Q Consensus 498 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 538 (658)
|++|+.|.+.+ . ...+++..|.++++|+.|+++++.+.
T Consensus 100 ~~~L~~l~L~~-~--i~~I~~~aF~~~~~L~~l~l~~n~i~ 137 (329)
T 3sb4_A 100 KQTLEKVILSE-K--IKNIEDAAFKGCDNLKICQIRKKTAP 137 (329)
T ss_dssp CTTCCC-CBCT-T--CCEECTTTTTTCTTCCEEEBCCSSCC
T ss_pred cCCCcEEECCc-c--ccchhHHHhhcCcccceEEcCCCCcc
Confidence 67777777766 2 44566666777777777777776654
No 146
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.79 E-value=1.2e-08 Score=104.90 Aligned_cols=90 Identities=21% Similarity=0.211 Sum_probs=52.9
Q ss_pred ccchHHhcCCCCCcEEEccC-CCCCCCc-cccccCCCcceEEccCCCCCCc--hhhhccCCCcEEEccCccCCccchhhc
Q 047163 515 QISDLFFEGTKELKDLSLTR-IPFSSLP-SSLGSLINLGTLCLEDCPRNDI--AILRQLKKLEILRLRHSYTERLPLEIG 590 (658)
Q Consensus 515 ~~~~~~~~~~~~L~~L~l~~-~~~~~lp-~~i~~l~~L~~L~L~~~~~~~l--~~~~~l~~L~~L~l~~~~~~~lp~~~~ 590 (658)
.+|. +..+++|+.|+|++ |.+..+| ..|+.|++|++|+|++|.+..+ ..|..|++|++|+|++|.+..+|..+.
T Consensus 23 ~ip~--l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~ 100 (347)
T 2ifg_A 23 SLHH--LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTV 100 (347)
T ss_dssp TTTT--SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTT
T ss_pred ccCC--CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHc
Confidence 3554 45566666666664 6666554 3456666666666666666655 345666666666666666666654433
Q ss_pred CCCCCcEEcccCccccc
Q 047163 591 QLTRLRLLDLSNCWRLK 607 (658)
Q Consensus 591 ~l~~L~~L~l~~~~~l~ 607 (658)
....|+.|++.+| .+.
T Consensus 101 ~~~~L~~l~l~~N-~~~ 116 (347)
T 2ifg_A 101 QGLSLQELVLSGN-PLH 116 (347)
T ss_dssp CSCCCCEEECCSS-CCC
T ss_pred ccCCceEEEeeCC-Ccc
Confidence 3333666666666 444
No 147
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.70 E-value=2.1e-08 Score=102.31 Aligned_cols=135 Identities=16% Similarity=0.203 Sum_probs=106.0
Q ss_pred ccchHHhcC--------CCCCcEEEccCCCCCCCcc-ccccCCCcceEEccCCCCCCc----------------hh----
Q 047163 515 QISDLFFEG--------TKELKDLSLTRIPFSSLPS-SLGSLINLGTLCLEDCPRNDI----------------AI---- 565 (658)
Q Consensus 515 ~~~~~~~~~--------~~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~L~~~~~~~l----------------~~---- 565 (658)
.+|+..|.+ +++|+.|++.+ .+..+++ .+..|++|+.|+++.|.+..+ ..
T Consensus 83 ~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~ 161 (329)
T 3sb4_A 83 FVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAY 161 (329)
T ss_dssp EECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHH
T ss_pred ccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhh
Confidence 467777888 99999999999 8887764 588899999999988864211 00
Q ss_pred ----------h--------------------------------------------------hccCCCcEEEccCccCCcc
Q 047163 566 ----------L--------------------------------------------------RQLKKLEILRLRHSYTERL 585 (658)
Q Consensus 566 ----------~--------------------------------------------------~~l~~L~~L~l~~~~~~~l 585 (658)
+ ..+++|+.++|++|.+..+
T Consensus 162 ~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I 241 (329)
T 3sb4_A 162 RFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTI 241 (329)
T ss_dssp HTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEE
T ss_pred hccccccccccccccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCccee
Confidence 0 0267899999999889999
Q ss_pred ch-hhcCCCCCcEEcccCcccccccChhhhcCCCCCc-EEEcccCCCCcccccCCCccchhhcCCCCccccCCCC
Q 047163 586 PL-EIGQLTRLRLLDLSNCWRLKVIAPNVISKLSRLE-ELYMGNSFPKWDKVEGGSNASLAELKGLSKLDTGHNR 658 (658)
Q Consensus 586 p~-~~~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~-~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~N~ 658 (658)
|. .+.++.+|+.|.+.+| ++.+++..+.++++|+ .+.+.++ ++...+..|.+|++|+.|++.+|+
T Consensus 242 ~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~~------l~~I~~~aF~~c~~L~~l~l~~n~ 308 (329)
T 3sb4_A 242 PDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPAS------VTAIEFGAFMGCDNLRYVLATGDK 308 (329)
T ss_dssp CTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECTT------CCEECTTTTTTCTTEEEEEECSSC
T ss_pred cHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEccc------ceEEchhhhhCCccCCEEEeCCCc
Confidence 75 5788999999999886 8888888889999999 9998762 444556788888899888886653
No 148
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.70 E-value=7.2e-09 Score=114.90 Aligned_cols=148 Identities=16% Similarity=0.167 Sum_probs=80.7
Q ss_pred CceEEeccCCCCCcCCC-----c-cCCCCCceEEEecCCCCCC--ccchHHhcCCCCCcEEEccCCCCCCCccccccCCC
Q 047163 478 GPIAISLPHRDIQELPE-----R-LQCPNLQLFLFFGKGYGPM--QISDLFFEGTKELKDLSLTRIPFSSLPSSLGSLIN 549 (658)
Q Consensus 478 ~~~~l~l~~~~~~~~~~-----~-~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~lp~~i~~l~~ 549 (658)
+++.+.+.+|.+..... . ..+++|+.|.+++|..... .....++..+++|++|++++|.+..+|..+..+++
T Consensus 165 ~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~ 244 (592)
T 3ogk_B 165 KIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAAN 244 (592)
T ss_dssp TCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTT
T ss_pred CCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhH
Confidence 67778887776543221 1 1567888888877763311 11123355677888888888777777766777777
Q ss_pred cceEEccCCCCC----Cc-hhhhccCCCcEEEccCccCCccchhhcCCCCCcEEcccCcccccccCh-hhhcCCCCCcEE
Q 047163 550 LGTLCLEDCPRN----DI-AILRQLKKLEILRLRHSYTERLPLEIGQLTRLRLLDLSNCWRLKVIAP-NVISKLSRLEEL 623 (658)
Q Consensus 550 L~~L~L~~~~~~----~l-~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~~~~-~~i~~l~~L~~L 623 (658)
|+.|+++.+... .. ..+..+++|+.|+++++....+|..+..+++|++|++++| .+..... ..+.++++|++|
T Consensus 245 L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~-~l~~~~~~~~~~~~~~L~~L 323 (592)
T 3ogk_B 245 LEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYA-LLETEDHCTLIQKCPNLEVL 323 (592)
T ss_dssp CCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTC-CCCHHHHHHHHTTCTTCCEE
T ss_pred HHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCC-cCCHHHHHHHHHhCcCCCEE
Confidence 777777643211 11 3344445555555555444445554555555555555555 2322111 123444555555
Q ss_pred Ecc
Q 047163 624 YMG 626 (658)
Q Consensus 624 ~l~ 626 (658)
++.
T Consensus 324 ~L~ 326 (592)
T 3ogk_B 324 ETR 326 (592)
T ss_dssp EEE
T ss_pred ecc
Confidence 544
No 149
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.68 E-value=5.4e-09 Score=115.90 Aligned_cols=126 Identities=15% Similarity=0.086 Sum_probs=58.2
Q ss_pred CCCCCcEEEccCCCCCC-----CccccccCCCcceEEccCCCCCCc------hhhhccCCCcEEEccCccCCccchhhcC
Q 047163 523 GTKELKDLSLTRIPFSS-----LPSSLGSLINLGTLCLEDCPRNDI------AILRQLKKLEILRLRHSYTERLPLEIGQ 591 (658)
Q Consensus 523 ~~~~L~~L~l~~~~~~~-----lp~~i~~l~~L~~L~L~~~~~~~l------~~~~~l~~L~~L~l~~~~~~~lp~~~~~ 591 (658)
.+++|++|++++|.+.. ++..+..+++|++|++++|.+..+ ..+..+++|++|++++|.+..+|..+.+
T Consensus 162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~ 241 (592)
T 3ogk_B 162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKA 241 (592)
T ss_dssp HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHH
T ss_pred hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhh
Confidence 44555555555554321 122233344555555555444311 2233445555555555544444444444
Q ss_pred CCCCcEEcc---------------------------cCcccccccChhhhcCCCCCcEEEcccCCCCcccccCCC-ccch
Q 047163 592 LTRLRLLDL---------------------------SNCWRLKVIAPNVISKLSRLEELYMGNSFPKWDKVEGGS-NASL 643 (658)
Q Consensus 592 l~~L~~L~l---------------------------~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~-~~~l 643 (658)
+++|++|++ +++ ....++. .+..+++|++|++++|. +++.. +..+
T Consensus 242 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~l~~-~~~~~~~L~~L~Ls~~~-----l~~~~~~~~~ 314 (592)
T 3ogk_B 242 AANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYM-GPNEMPI-LFPFAAQIRKLDLLYAL-----LETEDHCTLI 314 (592)
T ss_dssp CTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTC-CTTTGGG-GGGGGGGCCEEEETTCC-----CCHHHHHHHH
T ss_pred hhHHHhhcccccccccchHHHHHHhhccccccccCcccc-chhHHHH-HHhhcCCCcEEecCCCc-----CCHHHHHHHH
Confidence 444444444 443 2222332 24556666666666643 22221 1234
Q ss_pred hhcCCCCccccC
Q 047163 644 AELKGLSKLDTG 655 (658)
Q Consensus 644 ~~l~~L~~L~l~ 655 (658)
..+++|+.|+++
T Consensus 315 ~~~~~L~~L~L~ 326 (592)
T 3ogk_B 315 QKCPNLEVLETR 326 (592)
T ss_dssp TTCTTCCEEEEE
T ss_pred HhCcCCCEEecc
Confidence 566666666664
No 150
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.68 E-value=3.2e-08 Score=101.66 Aligned_cols=99 Identities=27% Similarity=0.243 Sum_probs=88.3
Q ss_pred cEEEccCC-CCCCCccccccCCCcceEEccC-CCCCCc--hhhhccCCCcEEEccCccCCccch-hhcCCCCCcEEcccC
Q 047163 528 KDLSLTRI-PFSSLPSSLGSLINLGTLCLED-CPRNDI--AILRQLKKLEILRLRHSYTERLPL-EIGQLTRLRLLDLSN 602 (658)
Q Consensus 528 ~~L~l~~~-~~~~lp~~i~~l~~L~~L~L~~-~~~~~l--~~~~~l~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~ 602 (658)
..++.+++ .+..+|. +..+.+|++|+|++ |.+..+ ..++.|++|++|+|++|.+..+|+ .|++|++|++|+|++
T Consensus 11 ~~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 11 SGLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp SCEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred CEEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 35688888 8999999 99999999999996 999988 569999999999999999999864 679999999999999
Q ss_pred cccccccChhhhcCCCCCcEEEcccCC
Q 047163 603 CWRLKVIAPNVISKLSRLEELYMGNSF 629 (658)
Q Consensus 603 ~~~l~~~~~~~i~~l~~L~~L~l~~~~ 629 (658)
| .++.+|+..+..++ |+.|++.+|.
T Consensus 90 N-~l~~~~~~~~~~~~-L~~l~l~~N~ 114 (347)
T 2ifg_A 90 N-ALESLSWKTVQGLS-LQELVLSGNP 114 (347)
T ss_dssp S-CCSCCCSTTTCSCC-CCEEECCSSC
T ss_pred C-ccceeCHHHcccCC-ceEEEeeCCC
Confidence 9 89999988666666 9999999865
No 151
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.64 E-value=4.6e-09 Score=108.69 Aligned_cols=136 Identities=18% Similarity=0.188 Sum_probs=77.1
Q ss_pred CceEEeccCCCCCcC--CCcc-CCCCCceEEEecCCCCCCc---cchHHhcCCCCCcEEEccCCCCCC-----Ccccccc
Q 047163 478 GPIAISLPHRDIQEL--PERL-QCPNLQLFLFFGKGYGPMQ---ISDLFFEGTKELKDLSLTRIPFSS-----LPSSLGS 546 (658)
Q Consensus 478 ~~~~l~l~~~~~~~~--~~~~-~~~~L~~L~l~~~~~~~~~---~~~~~~~~~~~L~~L~l~~~~~~~-----lp~~i~~ 546 (658)
.++.+.+++|.+... .... .+++|+.|++++|...... +...+....+.|+.|+|++|.+.. ++..+..
T Consensus 102 ~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~ 181 (372)
T 3un9_A 102 ALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAG 181 (372)
T ss_dssp CEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHT
T ss_pred CceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhc
Confidence 667777777766431 1111 3456777777777522111 111111245667777777777652 4445556
Q ss_pred CCCcceEEccCCCCCCc------hhhhccCCCcEEEccCccCCc-----cchhhcCCCCCcEEcccCcccccccChhhh
Q 047163 547 LINLGTLCLEDCPRNDI------AILRQLKKLEILRLRHSYTER-----LPLEIGQLTRLRLLDLSNCWRLKVIAPNVI 614 (658)
Q Consensus 547 l~~L~~L~L~~~~~~~l------~~~~~l~~L~~L~l~~~~~~~-----lp~~~~~l~~L~~L~l~~~~~l~~~~~~~i 614 (658)
+++|++|+|++|.+... ..+...++|++|+|++|.++. ++..+...++|++|++++| .++......+
T Consensus 182 ~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N-~i~~~g~~~L 259 (372)
T 3un9_A 182 NTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFN-ELSSEGRQVL 259 (372)
T ss_dssp CSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTS-SCCHHHHHHH
T ss_pred CCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCC-CCCHHHHHHH
Confidence 67777777777766542 345556677777777776653 3344555677777777777 5554443333
No 152
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.61 E-value=1.2e-07 Score=98.71 Aligned_cols=115 Identities=23% Similarity=0.295 Sum_probs=84.8
Q ss_pred cccccchHHHHHHHHHHhc----cCCccEEEEEcCCCChHHHHHHHHHHHhhhccC-CCEEEEEEEcCCCCHHHHHHHHH
Q 047163 154 FEAFDSKMEVFQDVMEALK----DDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKL-FDKVVMAEVTQNPDHHKIQDKLA 228 (658)
Q Consensus 154 ~~~~~gr~~~~~~l~~~l~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-F~~~~wv~v~~~~~~~~~~~~i~ 228 (658)
+..++||+++++.+.+++. ....+.+.|+|++|+||||||+.+++....... -...+|+++....+...+...++
T Consensus 19 p~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~ 98 (386)
T 2qby_A 19 PDELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLL 98 (386)
T ss_dssp CSCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHHT
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHHH
Confidence 3678999999999999886 345678999999999999999999988754311 12567888777777888888888
Q ss_pred HhcCCCCCC-CCCHHHHHHHHHHHHhc-CCeEEEEEecCCcc
Q 047163 229 FGLGMEFGF-NENMFQRASRLCERLKK-EKRLLIILDNIWIE 268 (658)
Q Consensus 229 ~~l~~~~~~-~~~~~~~~~~l~~~l~~-~k~~LlVlDdv~~~ 268 (658)
..++..... ..+..+....+.+.+.. +++.+||||+++..
T Consensus 99 ~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l 140 (386)
T 2qby_A 99 ESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAF 140 (386)
T ss_dssp TTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHH
T ss_pred HHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhh
Confidence 877654321 22344455666666653 35899999999764
No 153
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.59 E-value=1.7e-07 Score=97.80 Aligned_cols=113 Identities=18% Similarity=0.181 Sum_probs=82.0
Q ss_pred ccccchHHHHHHHHHHhc----cCCccEEEEEcCCCChHHHHHHHHHHHhhhcc----C--CCEEEEEEEcCCC-CHHHH
Q 047163 155 EAFDSKMEVFQDVMEALK----DDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDK----L--FDKVVMAEVTQNP-DHHKI 223 (658)
Q Consensus 155 ~~~~gr~~~~~~l~~~l~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~--F~~~~wv~v~~~~-~~~~~ 223 (658)
..++||+++++.+.+++. ....+.+.|+|++|+||||+|+.+++...... . ....+|+++.... +...+
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 99 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAV 99 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHH
Confidence 678999999999987775 34467899999999999999999998864321 1 2356788887766 78888
Q ss_pred HHHHHHhc-CCCCC-CCCCHHHHHHHHHHHHhcCCeEEEEEecCCcc
Q 047163 224 QDKLAFGL-GMEFG-FNENMFQRASRLCERLKKEKRLLIILDNIWIE 268 (658)
Q Consensus 224 ~~~i~~~l-~~~~~-~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~ 268 (658)
...++..+ +.... ......+....+...+.. ++.+|||||++..
T Consensus 100 ~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~-~~~vlilDEi~~l 145 (384)
T 2qby_B 100 LSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRN-IRAIIYLDEVDTL 145 (384)
T ss_dssp HHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSS-SCEEEEEETTHHH
T ss_pred HHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhcc-CCCEEEEECHHHh
Confidence 88888777 32221 122234556677777764 4459999999764
No 154
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.59 E-value=6.5e-09 Score=115.29 Aligned_cols=122 Identities=15% Similarity=0.108 Sum_probs=59.0
Q ss_pred CceEEeccCCCCCcCC-Ccc--CCCCCceEEEecCCCCCCccchHHhcCCCCCcEEEccCCCCCC-----CccccccCCC
Q 047163 478 GPIAISLPHRDIQELP-ERL--QCPNLQLFLFFGKGYGPMQISDLFFEGTKELKDLSLTRIPFSS-----LPSSLGSLIN 549 (658)
Q Consensus 478 ~~~~l~l~~~~~~~~~-~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-----lp~~i~~l~~ 549 (658)
+++++.+.++.+.... ..+ .+++|+.|.+.+|..........+...+++|++|++++|.+.. ++.....+++
T Consensus 106 ~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~ 185 (594)
T 2p1m_B 106 WLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTS 185 (594)
T ss_dssp TCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCC
T ss_pred CCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCc
Confidence 5666666666543211 111 3566777776665211111122234456667777776666442 2222224556
Q ss_pred cceEEccCCC--CCC--c-hhhhccCCCcEEEccCc-cCCccchhhcCCCCCcEEc
Q 047163 550 LGTLCLEDCP--RND--I-AILRQLKKLEILRLRHS-YTERLPLEIGQLTRLRLLD 599 (658)
Q Consensus 550 L~~L~L~~~~--~~~--l-~~~~~l~~L~~L~l~~~-~~~~lp~~~~~l~~L~~L~ 599 (658)
|++|++++|. +.. + .-+..+++|++|++++| .+..+|..+.++++|++|+
T Consensus 186 L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~ 241 (594)
T 2p1m_B 186 LVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELG 241 (594)
T ss_dssp CCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEE
T ss_pred CcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcc
Confidence 6666666664 111 1 11233466666666665 3333444444444444444
No 155
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.58 E-value=2.1e-08 Score=111.17 Aligned_cols=130 Identities=22% Similarity=0.209 Sum_probs=92.8
Q ss_pred CCCCCceEEEecCCCCCCccchHHhcCCCCCcEEEccCC-CCCC--CccccccCCCcceEEccCCCCCCc--hhh----h
Q 047163 497 QCPNLQLFLFFGKGYGPMQISDLFFEGTKELKDLSLTRI-PFSS--LPSSLGSLINLGTLCLEDCPRNDI--AIL----R 567 (658)
Q Consensus 497 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~--lp~~i~~l~~L~~L~L~~~~~~~l--~~~----~ 567 (658)
.+++|+.|.+++|... ...+..+...+++|++|++++| .+.. ++..+..+++|++|+|++|.+... ..+ .
T Consensus 103 ~~~~L~~L~L~~~~~~-~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~ 181 (594)
T 2p1m_B 103 SYTWLEEIRLKRMVVT-DDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPD 181 (594)
T ss_dssp HCTTCCEEEEESCBCC-HHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCT
T ss_pred hCCCCCeEEeeCcEEc-HHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhh
Confidence 5789999999998622 2223333346899999999998 4543 555556899999999999986542 222 3
Q ss_pred ccCCCcEEEccCcc--C--CccchhhcCCCCCcEEcccCcccccccChhhhcCCCCCcEEEcccC
Q 047163 568 QLKKLEILRLRHSY--T--ERLPLEIGQLTRLRLLDLSNCWRLKVIAPNVISKLSRLEELYMGNS 628 (658)
Q Consensus 568 ~l~~L~~L~l~~~~--~--~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~ 628 (658)
.+++|++|++++|. + ..++.-+.++++|++|++++|..+..++. .+.++++|+.|++..|
T Consensus 182 ~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~-~~~~~~~L~~L~l~~~ 245 (594)
T 2p1m_B 182 TYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLAT-LLQRAPQLEELGTGGY 245 (594)
T ss_dssp TCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHH-HHHHCTTCSEEECSBC
T ss_pred cCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHH-HHhcCCcceEcccccc
Confidence 67799999999986 2 12233345679999999999966666443 3677788888876544
No 156
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=98.54 E-value=4e-07 Score=88.02 Aligned_cols=52 Identities=21% Similarity=0.270 Sum_probs=43.3
Q ss_pred ccccccccchHHHHHHHHHHhccCC-ccEEEEEcCCCChHHHHHHHHHHHhhh
Q 047163 151 VKDFEAFDSKMEVFQDVMEALKDDK-LNIIGVYGMGGVGKTTLVKQVAKQVME 202 (658)
Q Consensus 151 ~~~~~~~~gr~~~~~~l~~~l~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~ 202 (658)
|.....++||+..++.+..++..+. .+.+.|+|++|+||||+|+.+++....
T Consensus 19 p~~~~~~~g~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~ 71 (250)
T 1njg_A 19 PQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 71 (250)
T ss_dssp CCSGGGCCSCHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHHC
T ss_pred CccHHHHhCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 3455679999999999999887543 358999999999999999999987753
No 157
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.49 E-value=1.8e-07 Score=95.92 Aligned_cols=55 Identities=22% Similarity=0.147 Sum_probs=25.3
Q ss_pred hcCCCCCcEEEccCCCCCCCccccccCCCcceEEccCCCCCCc--hhhh--ccCCCcEEEc
Q 047163 521 FEGTKELKDLSLTRIPFSSLPSSLGSLINLGTLCLEDCPRNDI--AILR--QLKKLEILRL 577 (658)
Q Consensus 521 ~~~~~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~l--~~~~--~l~~L~~L~l 577 (658)
+..+++|+.|.++++....+|. + .+++|+.|.|..|.+..- ..++ .+++|++|+|
T Consensus 168 l~~~P~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L 226 (362)
T 2ra8_A 168 LDAMPLLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVL 226 (362)
T ss_dssp HHTCTTCCEEEEECCBTCBCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEE
T ss_pred HhcCCCCcEEEEeCCCCceecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEE
Confidence 4445555555555542222332 2 245555555555544321 2222 4555555555
No 158
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.49 E-value=1.2e-06 Score=91.44 Aligned_cols=113 Identities=15% Similarity=0.185 Sum_probs=83.4
Q ss_pred ccccchHHHHHHHHHHhcc----CCcc--EEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCCCCHHHHHHHHH
Q 047163 155 EAFDSKMEVFQDVMEALKD----DKLN--IIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQNPDHHKIQDKLA 228 (658)
Q Consensus 155 ~~~~gr~~~~~~l~~~l~~----~~~~--vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~ 228 (658)
..++||+.+++.+..++.. .... .+.|+|++|+||||+|+.+++...... -..++|++++...+...+...++
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~l~ 95 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKT-TARFVYINGFIYRNFTAIIGEIA 95 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSC-CCEEEEEETTTCCSHHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhc-CeeEEEEeCccCCCHHHHHHHHH
Confidence 5689999999999888863 3334 899999999999999999998875421 12567888777778889999999
Q ss_pred HhcCCCCCC-CCCHHHHHHHHHHHHh-cCCeEEEEEecCCcc
Q 047163 229 FGLGMEFGF-NENMFQRASRLCERLK-KEKRLLIILDNIWIE 268 (658)
Q Consensus 229 ~~l~~~~~~-~~~~~~~~~~l~~~l~-~~k~~LlVlDdv~~~ 268 (658)
..++..... .....+....+...+. .+++.+|||||++..
T Consensus 96 ~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l 137 (389)
T 1fnn_A 96 RSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNL 137 (389)
T ss_dssp HHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGS
T ss_pred HHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECcccc
Confidence 888654321 2234445555555554 246899999999764
No 159
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.48 E-value=8.5e-07 Score=88.35 Aligned_cols=113 Identities=12% Similarity=0.169 Sum_probs=79.0
Q ss_pred cccchHHHHHHHHHHhc----cCCccEEEEEcCCCChHHHHHHHHHHHhhhccC---C-C-EEEEEEEcCCCCHHHHHHH
Q 047163 156 AFDSKMEVFQDVMEALK----DDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKL---F-D-KVVMAEVTQNPDHHKIQDK 226 (658)
Q Consensus 156 ~~~gr~~~~~~l~~~l~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~---F-~-~~~wv~v~~~~~~~~~~~~ 226 (658)
.+.||+++++.|...|. .+..+.+.|+|++|+|||++++.|++....... . . ..+.+++....+...+...
T Consensus 21 ~L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~ 100 (318)
T 3te6_A 21 LLKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEK 100 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHH
Confidence 37799999999987775 567788999999999999999999998864221 1 1 3566776677788889999
Q ss_pred HHHhcCCCCCCCCCHHHHHHHHHHHH--hcCCeEEEEEecCCcc
Q 047163 227 LAFGLGMEFGFNENMFQRASRLCERL--KKEKRLLIILDNIWIE 268 (658)
Q Consensus 227 i~~~l~~~~~~~~~~~~~~~~l~~~l--~~~k~~LlVlDdv~~~ 268 (658)
|++++...........+....++..+ ..++.++++||+++..
T Consensus 101 I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l 144 (318)
T 3te6_A 101 IWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENL 144 (318)
T ss_dssp HHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSS
T ss_pred HHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHh
Confidence 99988544221222233444444443 2357899999999754
No 160
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.47 E-value=5.7e-07 Score=93.85 Aligned_cols=166 Identities=12% Similarity=0.152 Sum_probs=97.9
Q ss_pred CceEEeccCCCCCcCCCcc-CCCCCceEEEecCCCCCCccchHHhcCCCCCcEEEccCCCCCCCccccccCCCcceEEcc
Q 047163 478 GPIAISLPHRDIQELPERL-QCPNLQLFLFFGKGYGPMQISDLFFEGTKELKDLSLTRIPFSSLPSSLGSLINLGTLCLE 556 (658)
Q Consensus 478 ~~~~l~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~L~ 556 (658)
+++.+.+..+.+..++... .+++|+.+.+..+ ...++...|.++.+|+.+++..+ +..++.....-.+|+.+.+.
T Consensus 181 ~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~---l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~~~L~~i~lp 256 (401)
T 4fdw_A 181 NLKKADLSKTKITKLPASTFVYAGIEEVLLPVT---LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRESGITTVKLP 256 (401)
T ss_dssp TCCEEECTTSCCSEECTTTTTTCCCSEEECCTT---CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTTCCCSEEEEE
T ss_pred cCCeeecCCCcceEechhhEeecccCEEEeCCc---hheehhhHhhCCCCCCEEecCCC-ccCccccccccCCccEEEeC
Confidence 5667777766666655433 4567777766543 45566666777777777777653 44443322222566666663
Q ss_pred CCCCCCc--hhhhccCCCcEEEccCccCC-----ccc-hhhcCCCCCcEEcccCcccccccChhhhcCCCCCcEEEcccC
Q 047163 557 DCPRNDI--AILRQLKKLEILRLRHSYTE-----RLP-LEIGQLTRLRLLDLSNCWRLKVIAPNVISKLSRLEELYMGNS 628 (658)
Q Consensus 557 ~~~~~~l--~~~~~l~~L~~L~l~~~~~~-----~lp-~~~~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~ 628 (658)
. ++..+ ..|..+++|+.+.+.++.+. .++ ..+.++++|+.+.+.+ +++.++...+.++++|+.+.+.++
T Consensus 257 ~-~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~--~i~~I~~~aF~~c~~L~~l~lp~~ 333 (401)
T 4fdw_A 257 N-GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE--SIRILGQGLLGGNRKVTQLTIPAN 333 (401)
T ss_dssp T-TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT--TCCEECTTTTTTCCSCCEEEECTT
T ss_pred C-CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC--ceEEEhhhhhcCCCCccEEEECcc
Confidence 2 34444 45666667777776665433 343 4456666777777663 466666666666677777766542
Q ss_pred CCCcccccCCCccchhhcCCCCccccCCC
Q 047163 629 FPKWDKVEGGSNASLAELKGLSKLDTGHN 657 (658)
Q Consensus 629 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~N 657 (658)
++...+..|.+| +|+.|.+.+|
T Consensus 334 ------l~~I~~~aF~~~-~L~~l~l~~n 355 (401)
T 4fdw_A 334 ------VTQINFSAFNNT-GIKEVKVEGT 355 (401)
T ss_dssp ------CCEECTTSSSSS-CCCEEEECCS
T ss_pred ------ccEEcHHhCCCC-CCCEEEEcCC
Confidence 333345556666 6666666655
No 161
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.35 E-value=2.2e-06 Score=89.39 Aligned_cols=141 Identities=15% Similarity=0.177 Sum_probs=77.3
Q ss_pred CceEEeccCCCCCcCCCcc-CCCCCceEEEecCCCCCCccchHHhcCCCCCcEEEccCCCCCCCccccccCCCcceEEcc
Q 047163 478 GPIAISLPHRDIQELPERL-QCPNLQLFLFFGKGYGPMQISDLFFEGTKELKDLSLTRIPFSSLPSSLGSLINLGTLCLE 556 (658)
Q Consensus 478 ~~~~l~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~L~ 556 (658)
+++.+.+..+ +..++... .-.+|+.+.+.. ....++...|.++.+|+.+++.++.+..+|.....+.+|+.+.|.
T Consensus 136 ~L~~i~l~~~-i~~I~~~aF~~~~L~~i~lp~---~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp 211 (401)
T 4fdw_A 136 QIAKVVLNEG-LKSIGDMAFFNSTVQEIVFPS---TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLP 211 (401)
T ss_dssp CCSEEECCTT-CCEECTTTTTTCCCCEEECCT---TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECC
T ss_pred CccEEEeCCC-ccEECHHhcCCCCceEEEeCC---CccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEeC
Confidence 3445554433 33333322 223566666654 245566666788888888888888777776655556777777776
Q ss_pred CCCCCCc--hhhhccCCCcEEEccCccCCccchh-hcCCCCCcEEcccCcccccccChhhhcCCCCCcEEEccc
Q 047163 557 DCPRNDI--AILRQLKKLEILRLRHSYTERLPLE-IGQLTRLRLLDLSNCWRLKVIAPNVISKLSRLEELYMGN 627 (658)
Q Consensus 557 ~~~~~~l--~~~~~l~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~ 627 (658)
.+ +..+ ..|..+++|+.+.+..+ +..++.. +.+ .+|+.+.+.+ +++.++...+.++++|+.+.+.+
T Consensus 212 ~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp~--~i~~I~~~aF~~c~~L~~l~l~~ 280 (401)
T 4fdw_A 212 VT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLPN--GVTNIASRAFYYCPELAEVTTYG 280 (401)
T ss_dssp TT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEET--TCCEECTTTTTTCTTCCEEEEES
T ss_pred Cc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeCC--CccEEChhHhhCCCCCCEEEeCC
Confidence 43 5544 45666667777766553 3333322 222 4444444432 24444444444444555544443
No 162
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=98.30 E-value=3.2e-06 Score=80.28 Aligned_cols=51 Identities=18% Similarity=0.260 Sum_probs=43.8
Q ss_pred ccccccccchHHHHHHHHHHhccCCccEEEEEcCCCChHHHHHHHHHHHhh
Q 047163 151 VKDFEAFDSKMEVFQDVMEALKDDKLNIIGVYGMGGVGKTTLVKQVAKQVM 201 (658)
Q Consensus 151 ~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (658)
|.....++||+..++.+.+++.....+.+.|+|++|+|||++|+.+++...
T Consensus 13 p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~ 63 (226)
T 2chg_A 13 PRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLF 63 (226)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCHHHHcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHh
Confidence 345667899999999999999866655699999999999999999998764
No 163
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.27 E-value=2e-06 Score=87.12 Aligned_cols=52 Identities=23% Similarity=0.360 Sum_probs=44.6
Q ss_pred cccccccccchHHHHHHHHHHhccCCccEEEEEcCCCChHHHHHHHHHHHhh
Q 047163 150 QVKDFEAFDSKMEVFQDVMEALKDDKLNIIGVYGMGGVGKTTLVKQVAKQVM 201 (658)
Q Consensus 150 ~~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (658)
.|.....++|++..++.+.+++..+..+.+.|+|++|+||||+|+.+++...
T Consensus 16 ~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~ 67 (323)
T 1sxj_B 16 RPQVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELL 67 (323)
T ss_dssp CCSSGGGCCSCTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhc
Confidence 3455677999999999999998876666699999999999999999998864
No 164
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.25 E-value=2.8e-06 Score=78.63 Aligned_cols=51 Identities=22% Similarity=0.355 Sum_probs=44.2
Q ss_pred cccccccchHHHHHHHHHHhccCCccEEEEEcCCCChHHHHHHHHHHHhhh
Q 047163 152 KDFEAFDSKMEVFQDVMEALKDDKLNIIGVYGMGGVGKTTLVKQVAKQVME 202 (658)
Q Consensus 152 ~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 202 (658)
.....++||+++++.+.+.+.....+.+.|+|++|+|||++|+.+++....
T Consensus 19 ~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~ 69 (195)
T 1jbk_A 19 GKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIIN 69 (195)
T ss_dssp TCSCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred ccccccccchHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 445678999999999999988766678899999999999999999988643
No 165
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.07 E-value=2.8e-06 Score=76.52 Aligned_cols=82 Identities=18% Similarity=0.190 Sum_probs=42.8
Q ss_pred CCcEEEccCCCCCCC-ccccccCCCcceEEccCCC-CCCc--hhhhcc----CCCcEEEccCc-cCCcc-chhhcCCCCC
Q 047163 526 ELKDLSLTRIPFSSL-PSSLGSLINLGTLCLEDCP-RNDI--AILRQL----KKLEILRLRHS-YTERL-PLEIGQLTRL 595 (658)
Q Consensus 526 ~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~L~~~~-~~~l--~~~~~l----~~L~~L~l~~~-~~~~l-p~~~~~l~~L 595 (658)
.|+.||+++|.++.. ...+..+++|+.|+|++|. +++- ..+..+ ++|++|+|++| .++.- -..+.++++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 577777777766521 2345566666666666664 4432 344433 24555555555 23321 1224445555
Q ss_pred cEEcccCccccc
Q 047163 596 RLLDLSNCWRLK 607 (658)
Q Consensus 596 ~~L~l~~~~~l~ 607 (658)
++|++++|+.++
T Consensus 142 ~~L~L~~c~~It 153 (176)
T 3e4g_A 142 KYLFLSDLPGVK 153 (176)
T ss_dssp CEEEEESCTTCC
T ss_pred CEEECCCCCCCC
Confidence 555555554444
No 166
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.05 E-value=1.3e-05 Score=73.72 Aligned_cols=51 Identities=20% Similarity=0.283 Sum_probs=44.0
Q ss_pred cccccccchHHHHHHHHHHhccCCccEEEEEcCCCChHHHHHHHHHHHhhh
Q 047163 152 KDFEAFDSKMEVFQDVMEALKDDKLNIIGVYGMGGVGKTTLVKQVAKQVME 202 (658)
Q Consensus 152 ~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 202 (658)
.....++||+.+++.+.+.+.....+.+.|+|++|+|||++|+.+++....
T Consensus 19 ~~~~~~~g~~~~~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 19 GKLDPVIGRDTEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp TCSCCCCSCHHHHHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred cccchhhcchHHHHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 345678999999999999987766678899999999999999999988643
No 167
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.03 E-value=4.1e-06 Score=77.19 Aligned_cols=108 Identities=16% Similarity=0.175 Sum_probs=64.9
Q ss_pred hcCCCCCcEEEccCC-CCC-----CCccccccCCCcceEEccCCCCCCc------hhhhccCCCcEEEccCccCCc----
Q 047163 521 FEGTKELKDLSLTRI-PFS-----SLPSSLGSLINLGTLCLEDCPRNDI------AILRQLKKLEILRLRHSYTER---- 584 (658)
Q Consensus 521 ~~~~~~L~~L~l~~~-~~~-----~lp~~i~~l~~L~~L~L~~~~~~~l------~~~~~l~~L~~L~l~~~~~~~---- 584 (658)
+...+.|+.|+|++| .+. .+...+...++|++|+|++|.+..- ..+...++|++|+|++|.++.
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~ 111 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL 111 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence 455666777777776 655 2334455566777777777766542 344455667777777776554
Q ss_pred -cchhhcCCCCCcEEcc--cCcccccccC----hhhhcCCCCCcEEEcccCC
Q 047163 585 -LPLEIGQLTRLRLLDL--SNCWRLKVIA----PNVISKLSRLEELYMGNSF 629 (658)
Q Consensus 585 -lp~~~~~l~~L~~L~l--~~~~~l~~~~----~~~i~~l~~L~~L~l~~~~ 629 (658)
+...+...++|++|++ ++| .+.... ...+...++|++|++++|.
T Consensus 112 ~l~~~L~~n~~L~~L~L~~~~N-~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 112 ALVEALQSNTSLIELRIDNQSQ-PLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp HHHHGGGGCSSCCEEECCCCSS-CCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred HHHHHHHhCCCceEEEecCCCC-CCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 3455666667777777 556 444321 1224455677777777643
No 168
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.01 E-value=8.6e-05 Score=75.01 Aligned_cols=51 Identities=24% Similarity=0.369 Sum_probs=40.9
Q ss_pred ccccccccchHHHHHHHHHHhc-----cCCccEEEEEcCCCChHHHHHHHHHHHhh
Q 047163 151 VKDFEAFDSKMEVFQDVMEALK-----DDKLNIIGVYGMGGVGKTTLVKQVAKQVM 201 (658)
Q Consensus 151 ~~~~~~~~gr~~~~~~l~~~l~-----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (658)
|.....++|++..++.+..++. ......+.|+|++|+|||++|+.+++...
T Consensus 8 p~~~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~~ 63 (324)
T 1hqc_A 8 PKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELG 63 (324)
T ss_dssp CCSTTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHHT
T ss_pred cccHHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHhC
Confidence 3456679999999888887765 13346789999999999999999998763
No 169
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.91 E-value=7.5e-06 Score=75.45 Aligned_cols=111 Identities=11% Similarity=0.041 Sum_probs=84.5
Q ss_pred cccccCCCcceEEccCC-CCCCc------hhhhccCCCcEEEccCccCCc-----cchhhcCCCCCcEEcccCccccccc
Q 047163 542 SSLGSLINLGTLCLEDC-PRNDI------AILRQLKKLEILRLRHSYTER-----LPLEIGQLTRLRLLDLSNCWRLKVI 609 (658)
Q Consensus 542 ~~i~~l~~L~~L~L~~~-~~~~l------~~~~~l~~L~~L~l~~~~~~~-----lp~~~~~l~~L~~L~l~~~~~l~~~ 609 (658)
..+...++|+.|+|++| .+..- ..+...++|++|+|++|.++. +...+...++|++|++++| .+...
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N-~i~~~ 108 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESN-FISGS 108 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSS-CCCHH
T ss_pred HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCC-cCCHH
Confidence 44566889999999999 87652 566677899999999998764 4556677789999999999 67653
Q ss_pred C----hhhhcCCCCCcEEEc--ccCCCCcccccCC----CccchhhcCCCCccccCCCC
Q 047163 610 A----PNVISKLSRLEELYM--GNSFPKWDKVEGG----SNASLAELKGLSKLDTGHNR 658 (658)
Q Consensus 610 ~----~~~i~~l~~L~~L~l--~~~~~~~~~~~~~----~~~~l~~l~~L~~L~l~~N~ 658 (658)
. ...+...++|++|++ ++|. +... +...+...++|++|++++|+
T Consensus 109 g~~~l~~~L~~n~~L~~L~L~~~~N~-----i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 109 GILALVEALQSNTSLIELRIDNQSQP-----LGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp HHHHHHHGGGGCSSCCEEECCCCSSC-----CCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred HHHHHHHHHHhCCCceEEEecCCCCC-----CCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 2 233677789999999 6644 4433 34456677999999999884
No 170
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.85 E-value=1.4e-05 Score=81.73 Aligned_cols=58 Identities=17% Similarity=0.207 Sum_probs=24.7
Q ss_pred cCCCcEEEccCccCCc-cchhh---cCCCCCcEEcccCcccccccCh----hhhcCCCCCcEEEccc
Q 047163 569 LKKLEILRLRHSYTER-LPLEI---GQLTRLRLLDLSNCWRLKVIAP----NVISKLSRLEELYMGN 627 (658)
Q Consensus 569 l~~L~~L~l~~~~~~~-lp~~~---~~l~~L~~L~l~~~~~l~~~~~----~~i~~l~~L~~L~l~~ 627 (658)
+++|++|+|++|.+.. .+..+ ..+++|++|+++.| .+..... ..+.++++|+.|+++.
T Consensus 251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n-~L~d~G~~~L~~~L~~l~~L~~L~L~~ 316 (362)
T 2ra8_A 251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAG-VLTDEGARLLLDHVDKIKHLKFINMKY 316 (362)
T ss_dssp CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSS-CCBHHHHHHHHTTHHHHTTCSEEECCS
T ss_pred CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCC-CCChHHHHHHHhhcccCCcceEEECCC
Confidence 4555555555554321 11111 13445555555555 3433211 1123345555555554
No 171
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.81 E-value=5.6e-06 Score=74.48 Aligned_cols=83 Identities=16% Similarity=0.197 Sum_probs=67.0
Q ss_pred CCCcceEEccCCCCCCc--hhhhccCCCcEEEccCc-cCCccc-hhhcCC----CCCcEEcccCcccccccChhhhcCCC
Q 047163 547 LINLGTLCLEDCPRNDI--AILRQLKKLEILRLRHS-YTERLP-LEIGQL----TRLRLLDLSNCWRLKVIAPNVISKLS 618 (658)
Q Consensus 547 l~~L~~L~L~~~~~~~l--~~~~~l~~L~~L~l~~~-~~~~lp-~~~~~l----~~L~~L~l~~~~~l~~~~~~~i~~l~ 618 (658)
-.+|+.|++++|.++.. ..+..+++|++|+|++| .++.-- ..+..+ ++|++|++++|.+++...-..+.+++
T Consensus 60 ~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~ 139 (176)
T 3e4g_A 60 KYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR 139 (176)
T ss_dssp CCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred CceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence 35799999999998764 77889999999999999 455421 335554 37999999999778876555688899
Q ss_pred CCcEEEcccCC
Q 047163 619 RLEELYMGNSF 629 (658)
Q Consensus 619 ~L~~L~l~~~~ 629 (658)
+|++|++++|.
T Consensus 140 ~L~~L~L~~c~ 150 (176)
T 3e4g_A 140 NLKYLFLSDLP 150 (176)
T ss_dssp TCCEEEEESCT
T ss_pred CCCEEECCCCC
Confidence 99999999985
No 172
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=97.76 E-value=2.1e-05 Score=79.66 Aligned_cols=52 Identities=17% Similarity=0.283 Sum_probs=44.5
Q ss_pred cccccccccchHHHHHHHHHHhccCCccEEEEEcCCCChHHHHHHHHHHHhh
Q 047163 150 QVKDFEAFDSKMEVFQDVMEALKDDKLNIIGVYGMGGVGKTTLVKQVAKQVM 201 (658)
Q Consensus 150 ~~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (658)
.|.....++|++..++.+..++..+..+.+.|+|++|+||||+|+.+++...
T Consensus 20 ~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l~ 71 (327)
T 1iqp_A 20 RPQRLDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELF 71 (327)
T ss_dssp CCCSTTTCCSCHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHH
T ss_pred CCCCHHHhhCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhc
Confidence 3345667899999999999998877766799999999999999999998864
No 173
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.74 E-value=8.3e-05 Score=73.63 Aligned_cols=95 Identities=20% Similarity=0.212 Sum_probs=61.1
Q ss_pred cccccccchHHHHHHHHHHhcc-------------CCccEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCCC
Q 047163 152 KDFEAFDSKMEVFQDVMEALKD-------------DKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQNP 218 (658)
Q Consensus 152 ~~~~~~~gr~~~~~~l~~~l~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~ 218 (658)
.....++|.+..++.|.+.+.. ...+-+.|+|++|+|||++|+.+++.... ..+.+..+.-.
T Consensus 14 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~-----~~~~v~~~~~~ 88 (285)
T 3h4m_A 14 VRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNA-----TFIRVVGSELV 88 (285)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTC-----EEEEEEGGGGC
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCC-----CEEEEehHHHH
Confidence 4466789999999988877641 34567999999999999999999987642 12233322110
Q ss_pred CHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhcCCeEEEEEecCCc
Q 047163 219 DHHKIQDKLAFGLGMEFGFNENMFQRASRLCERLKKEKRLLIILDNIWI 267 (658)
Q Consensus 219 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~ 267 (658)
... ..........+.......+..+|+|||++.
T Consensus 89 --------------~~~--~~~~~~~~~~~~~~~~~~~~~vl~iDEid~ 121 (285)
T 3h4m_A 89 --------------KKF--IGEGASLVKDIFKLAKEKAPSIIFIDEIDA 121 (285)
T ss_dssp --------------CCS--TTHHHHHHHHHHHHHHHTCSEEEEEETTHH
T ss_pred --------------Hhc--cchHHHHHHHHHHHHHHcCCeEEEEECHHH
Confidence 000 111223344444554445678999999964
No 174
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.70 E-value=4.3e-05 Score=74.15 Aligned_cols=76 Identities=20% Similarity=0.229 Sum_probs=34.3
Q ss_pred CCCcceEEccCCCCCCch----hhhccCCCcEEEccCccCCccchhhcCCC--CCcEEcccCcccccc-cC------hhh
Q 047163 547 LINLGTLCLEDCPRNDIA----ILRQLKKLEILRLRHSYTERLPLEIGQLT--RLRLLDLSNCWRLKV-IA------PNV 613 (658)
Q Consensus 547 l~~L~~L~L~~~~~~~l~----~~~~l~~L~~L~l~~~~~~~lp~~~~~l~--~L~~L~l~~~~~l~~-~~------~~~ 613 (658)
+++|+.|+|++|.+..++ .++.+++|+.|+|++|.+..+. .+..+. +|+.|++++| .+.. +| ...
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~N-pl~~~~~~~~~y~~~i 246 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGN-SLCDTFRDQSTYISAI 246 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTS-TTGGGCSSHHHHHHHH
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch-hhhhcccCCcceEEccCC-cCccccCcchhHHHHH
Confidence 344444444444444331 2234445555555555444442 122222 5555555555 3332 21 123
Q ss_pred hcCCCCCcEEE
Q 047163 614 ISKLSRLEELY 624 (658)
Q Consensus 614 i~~l~~L~~L~ 624 (658)
+..+++|+.|+
T Consensus 247 l~~~P~L~~LD 257 (267)
T 3rw6_A 247 RERFPKLLRLD 257 (267)
T ss_dssp HHHCTTCCEES
T ss_pred HHHCcccCeEC
Confidence 55666666665
No 175
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.65 E-value=0.00031 Score=69.94 Aligned_cols=96 Identities=14% Similarity=0.122 Sum_probs=62.0
Q ss_pred cccccccchHHHHHHHHHHhcc------------CCccEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCCCC
Q 047163 152 KDFEAFDSKMEVFQDVMEALKD------------DKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQNPD 219 (658)
Q Consensus 152 ~~~~~~~gr~~~~~~l~~~l~~------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~ 219 (658)
.....++|.+..++.+.+.+.. ...+.+.|+|++|+||||+|+.+++.... ..+.++.+.-..
T Consensus 18 ~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~~-----~~~~i~~~~l~~ 92 (297)
T 3b9p_A 18 VEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSA-----TFLNISAASLTS 92 (297)
T ss_dssp CCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTTC-----EEEEEESTTTSS
T ss_pred CCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhCC-----CeEEeeHHHHhh
Confidence 4556789999999988877631 23468899999999999999999987632 223334322110
Q ss_pred HHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhcCCeEEEEEecCCcc
Q 047163 220 HHKIQDKLAFGLGMEFGFNENMFQRASRLCERLKKEKRLLIILDNIWIE 268 (658)
Q Consensus 220 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~ 268 (658)
.. ..........+.......+..+|+||+++..
T Consensus 93 --------------~~--~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l 125 (297)
T 3b9p_A 93 --------------KY--VGDGEKLVRALFAVARHMQPSIIFIDEVDSL 125 (297)
T ss_dssp --------------SS--CSCHHHHHHHHHHHHHHTCSEEEEEETGGGT
T ss_pred --------------cc--cchHHHHHHHHHHHHHHcCCcEEEeccHHHh
Confidence 00 1122334444455444456789999999753
No 176
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.59 E-value=7.8e-05 Score=72.30 Aligned_cols=58 Identities=28% Similarity=0.419 Sum_probs=26.4
Q ss_pred ccCCCcEEEccCccCCccc---hhhcCCCCCcEEcccCcccccccChhhhcCCC--CCcEEEcccC
Q 047163 568 QLKKLEILRLRHSYTERLP---LEIGQLTRLRLLDLSNCWRLKVIAPNVISKLS--RLEELYMGNS 628 (658)
Q Consensus 568 ~l~~L~~L~l~~~~~~~lp---~~~~~l~~L~~L~l~~~~~l~~~~~~~i~~l~--~L~~L~l~~~ 628 (658)
++++|+.|+|++|.+..++ ..+..+++|+.|+|++| .++.+.. +..+. +|++|++++|
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~~~--l~~l~~l~L~~L~L~~N 230 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN-ELKSERE--LDKIKGLKLEELWLDGN 230 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTS-CCCSGGG--GGGGTTSCCSEEECTTS
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCC-ccCCchh--hhhcccCCcceEEccCC
Confidence 3445555555555444332 33344555555555555 4444311 22222 4555555553
No 177
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=97.56 E-value=0.00033 Score=73.67 Aligned_cols=53 Identities=21% Similarity=0.394 Sum_probs=44.6
Q ss_pred CcccccccccchHHHH---HHHHHHhccCCccEEEEEcCCCChHHHHHHHHHHHhh
Q 047163 149 MQVKDFEAFDSKMEVF---QDVMEALKDDKLNIIGVYGMGGVGKTTLVKQVAKQVM 201 (658)
Q Consensus 149 ~~~~~~~~~~gr~~~~---~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (658)
+.|.....++|.+..+ ..+...+..+....+.|+|++|+||||+|+.+++...
T Consensus 20 ~rP~~l~~ivGq~~~~~~~~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~ 75 (447)
T 3pvs_A 20 MRPENLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYAN 75 (447)
T ss_dssp TCCCSTTTCCSCHHHHSTTSHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred hCCCCHHHhCCcHHHHhchHHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHhC
Confidence 3456677899999888 6777777777778899999999999999999998764
No 178
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.53 E-value=0.00035 Score=68.01 Aligned_cols=94 Identities=18% Similarity=0.146 Sum_probs=55.2
Q ss_pred ccccccchHHHHHHHHHHhc---c---------CCccEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCCCCH
Q 047163 153 DFEAFDSKMEVFQDVMEALK---D---------DKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQNPDH 220 (658)
Q Consensus 153 ~~~~~~gr~~~~~~l~~~l~---~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~ 220 (658)
....++|.+..++.+.+.+. . ...+-+.|+|++|+|||++|+.+++.... ..+.++.+.-.+.
T Consensus 4 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~-----~~~~~~~~~~~~~ 78 (262)
T 2qz4_A 4 SFKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQV-----PFLAMAGAEFVEV 78 (262)
T ss_dssp CTTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTC-----CEEEEETTTTSSS
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCC-----CEEEechHHHHhh
Confidence 34567888887776655432 1 23456889999999999999999987642 1233443321110
Q ss_pred HHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhcCCeEEEEEecCCc
Q 047163 221 HKIQDKLAFGLGMEFGFNENMFQRASRLCERLKKEKRLLIILDNIWI 267 (658)
Q Consensus 221 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~ 267 (658)
. ..........+..........+|+|||++.
T Consensus 79 --------------~--~~~~~~~~~~~~~~a~~~~~~vl~iDeid~ 109 (262)
T 2qz4_A 79 --------------I--GGLGAARVRSLFKEARARAPCIVYIDEIDA 109 (262)
T ss_dssp --------------S--TTHHHHHHHHHHHHHHHTCSEEEEEECC--
T ss_pred --------------c--cChhHHHHHHHHHHHHhcCCeEEEEeCcch
Confidence 0 111122233344444434679999999974
No 179
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.52 E-value=0.0004 Score=64.65 Aligned_cols=89 Identities=19% Similarity=0.259 Sum_probs=52.6
Q ss_pred hHHHHHHHHHHhccC----CccEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCCCCHHHHHHHHHHhcCCCC
Q 047163 160 KMEVFQDVMEALKDD----KLNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQNPDHHKIQDKLAFGLGMEF 235 (658)
Q Consensus 160 r~~~~~~l~~~l~~~----~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~ 235 (658)
+...++.+.+++... ..+.+.|+|.+|+|||+||+.+++..... ...+++++++ .+...+.......
T Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~--~~~~~~~~~~------~~~~~~~~~~~~~- 104 (202)
T 2w58_A 34 RIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKR--NVSSLIVYVP------ELFRELKHSLQDQ- 104 (202)
T ss_dssp HHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTT--TCCEEEEEHH------HHHHHHHHC---C-
T ss_pred HHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEEhH------HHHHHHHHHhccc-
Confidence 334555556665432 12689999999999999999999987643 3345666543 4444444332211
Q ss_pred CCCCCHHHHHHHHHHHHhcCCeEEEEEecCCc
Q 047163 236 GFNENMFQRASRLCERLKKEKRLLIILDNIWI 267 (658)
Q Consensus 236 ~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~ 267 (658)
.. ..+...+.. .-+|||||++.
T Consensus 105 ----~~----~~~~~~~~~--~~~lilDei~~ 126 (202)
T 2w58_A 105 ----TM----NEKLDYIKK--VPVLMLDDLGA 126 (202)
T ss_dssp ----CC----HHHHHHHHH--SSEEEEEEECC
T ss_pred ----hH----HHHHHHhcC--CCEEEEcCCCC
Confidence 11 122333442 23999999964
No 180
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=97.51 E-value=7.8e-05 Score=75.09 Aligned_cols=51 Identities=18% Similarity=0.260 Sum_probs=43.5
Q ss_pred cccccccccchHHHHHHHHHHhccCCccEEEEEcCCCChHHHHHHHHHHHh
Q 047163 150 QVKDFEAFDSKMEVFQDVMEALKDDKLNIIGVYGMGGVGKTTLVKQVAKQV 200 (658)
Q Consensus 150 ~~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 200 (658)
.|.....++|++..++.+.+++..+..+.+.|+|++|+|||++|+.+++..
T Consensus 12 ~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l 62 (319)
T 2chq_A 12 RPRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDL 62 (319)
T ss_dssp SCSSGGGSCSCHHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHH
T ss_pred CCCCHHHHhCCHHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHh
Confidence 344566789999999999998876666669999999999999999999886
No 181
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.51 E-value=0.00028 Score=64.45 Aligned_cols=90 Identities=14% Similarity=0.174 Sum_probs=52.5
Q ss_pred hHHHHHHHHHHhcc---CCccEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCCCCHHHHHHHHHHhcCCCCC
Q 047163 160 KMEVFQDVMEALKD---DKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQNPDHHKIQDKLAFGLGMEFG 236 (658)
Q Consensus 160 r~~~~~~l~~~l~~---~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~ 236 (658)
+...++.+.+++.+ ..-..+.|+|++|+||||||+.+++.......+. +++++ ..++...+.........
T Consensus 19 ~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~-~~~~~------~~~~~~~~~~~~~~~~~ 91 (180)
T 3ec2_A 19 QNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIR-GYFFD------TKDLIFRLKHLMDEGKD 91 (180)
T ss_dssp HHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCC-CCEEE------HHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCe-EEEEE------HHHHHHHHHHHhcCchH
Confidence 44555555555532 2346899999999999999999999886332222 23333 33444444333221111
Q ss_pred CCCCHHHHHHHHHHHHhcCCeEEEEEecCCc
Q 047163 237 FNENMFQRASRLCERLKKEKRLLIILDNIWI 267 (658)
Q Consensus 237 ~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~ 267 (658)
. .+...+. +.-++||||++.
T Consensus 92 ---~------~~~~~~~--~~~llilDE~~~ 111 (180)
T 3ec2_A 92 ---T------KFLKTVL--NSPVLVLDDLGS 111 (180)
T ss_dssp ---S------HHHHHHH--TCSEEEEETCSS
T ss_pred ---H------HHHHHhc--CCCEEEEeCCCC
Confidence 1 2233343 456899999973
No 182
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.46 E-value=0.0007 Score=68.09 Aligned_cols=96 Identities=17% Similarity=0.158 Sum_probs=60.4
Q ss_pred cccccccchHHHHHHHHHHhc------------cCCccEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCCCC
Q 047163 152 KDFEAFDSKMEVFQDVMEALK------------DDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQNPD 219 (658)
Q Consensus 152 ~~~~~~~gr~~~~~~l~~~l~------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~ 219 (658)
....++.|.+..++.|.+.+. ....+-|.|+|++|+|||+||+.+++.... ...+.++.+.-.
T Consensus 9 ~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~----~~~~~i~~~~l~- 83 (322)
T 1xwi_A 9 VKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANN----STFFSISSSDLV- 83 (322)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTS----CEEEEEECCSSC-
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCC----CcEEEEEhHHHH-
Confidence 445668888888877776552 112367899999999999999999987621 122333333211
Q ss_pred HHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhcCCeEEEEEecCCc
Q 047163 220 HHKIQDKLAFGLGMEFGFNENMFQRASRLCERLKKEKRLLIILDNIWI 267 (658)
Q Consensus 220 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~ 267 (658)
... ..........++......+..+|+||+++.
T Consensus 84 -------------~~~--~g~~~~~~~~lf~~a~~~~~~vl~iDEid~ 116 (322)
T 1xwi_A 84 -------------SKW--LGESEKLVKNLFQLARENKPSIIFIDEIDS 116 (322)
T ss_dssp -------------CSS--CCSCHHHHHHHHHHHHHTSSEEEEEETTTG
T ss_pred -------------hhh--hhHHHHHHHHHHHHHHhcCCcEEEeecHHH
Confidence 010 111233445555555546789999999974
No 183
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.44 E-value=0.00017 Score=77.87 Aligned_cols=66 Identities=15% Similarity=0.249 Sum_probs=49.4
Q ss_pred cccccccccchHHHHHHHHHHhcc-----------------CCccEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEE
Q 047163 150 QVKDFEAFDSKMEVFQDVMEALKD-----------------DKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMA 212 (658)
Q Consensus 150 ~~~~~~~~~gr~~~~~~l~~~l~~-----------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv 212 (658)
.|.....++|++..++.+.+++.. +..+.+.|+|++|+||||+|+.+++... + .++.+
T Consensus 34 rP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~----~-~~i~i 108 (516)
T 1sxj_A 34 APTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELG----Y-DILEQ 108 (516)
T ss_dssp CCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTT----C-EEEEE
T ss_pred CCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcC----C-CEEEE
Confidence 345567799999999999999863 1347899999999999999999998772 2 23445
Q ss_pred EEcCCCCH
Q 047163 213 EVTQNPDH 220 (658)
Q Consensus 213 ~v~~~~~~ 220 (658)
+++.....
T Consensus 109 n~s~~~~~ 116 (516)
T 1sxj_A 109 NASDVRSK 116 (516)
T ss_dssp CTTSCCCH
T ss_pred eCCCcchH
Confidence 55544443
No 184
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=97.42 E-value=0.00038 Score=71.72 Aligned_cols=50 Identities=22% Similarity=0.312 Sum_probs=41.9
Q ss_pred cccccccchHHHHHHHHHHhccCC-ccEEEEEcCCCChHHHHHHHHHHHhh
Q 047163 152 KDFEAFDSKMEVFQDVMEALKDDK-LNIIGVYGMGGVGKTTLVKQVAKQVM 201 (658)
Q Consensus 152 ~~~~~~~gr~~~~~~l~~~l~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (658)
.....++||+..++.+...+..+. ...+.|+|++|+||||+|+.+++...
T Consensus 13 ~~~~~~vg~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~ 63 (373)
T 1jr3_A 13 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 (373)
T ss_dssp CSTTTSCSCHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHS
T ss_pred CchhhccCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 345568999999999999887554 35789999999999999999998764
No 185
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.41 E-value=0.0005 Score=70.36 Aligned_cols=95 Identities=16% Similarity=0.112 Sum_probs=60.9
Q ss_pred cccccccchHHHHHHHHHHhc------------cCCccEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCCCC
Q 047163 152 KDFEAFDSKMEVFQDVMEALK------------DDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQNPD 219 (658)
Q Consensus 152 ~~~~~~~gr~~~~~~l~~~l~------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~ 219 (658)
.....++|.+..++.|.+.+. ....+.|.|+|++|+|||++|+.+++.... ..+.++++.-..
T Consensus 81 ~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~-----~~~~i~~~~l~~ 155 (357)
T 3d8b_A 81 VNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSGA-----TFFSISASSLTS 155 (357)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHTTC-----EEEEEEGGGGCC
T ss_pred CCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHcCC-----eEEEEehHHhhc
Confidence 445668999999988887763 134568999999999999999999877532 233444432111
Q ss_pred HHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhcCCeEEEEEecCCc
Q 047163 220 HHKIQDKLAFGLGMEFGFNENMFQRASRLCERLKKEKRLLIILDNIWI 267 (658)
Q Consensus 220 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~ 267 (658)
.. ..........+.......+..+|+||+++.
T Consensus 156 --------------~~--~g~~~~~~~~~~~~a~~~~~~vl~iDEid~ 187 (357)
T 3d8b_A 156 --------------KW--VGEGEKMVRALFAVARCQQPAVIFIDEIDS 187 (357)
T ss_dssp --------------SS--TTHHHHHHHHHHHHHHHTCSEEEEEETHHH
T ss_pred --------------cc--cchHHHHHHHHHHHHHhcCCeEEEEeCchh
Confidence 00 111223334444444445679999999863
No 186
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.36 E-value=0.00051 Score=78.90 Aligned_cols=103 Identities=16% Similarity=0.315 Sum_probs=62.9
Q ss_pred cccccccchHHHHHHHHHHhccCCccEEEEEcCCCChHHHHHHHHHHHhhhccC---C-C-EEEEEEEcCCCCHHHHHHH
Q 047163 152 KDFEAFDSKMEVFQDVMEALKDDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKL---F-D-KVVMAEVTQNPDHHKIQDK 226 (658)
Q Consensus 152 ~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~---F-~-~~~wv~v~~~~~~~~~~~~ 226 (658)
.....++||++++..+++.+.....+-+.++|.+|+||||+|+.+++....... . + .++.++++.-..
T Consensus 167 ~~ld~viGr~~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~------- 239 (854)
T 1qvr_A 167 GKLDPVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLA------- 239 (854)
T ss_dssp TCSCCCCSCHHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC------------
T ss_pred CCCcccCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhc-------
Confidence 345678999999999999987665566899999999999999999998743211 1 2 334444321100
Q ss_pred HHHhcCCCCCCCCCHHHHHHHHHHHHhc-CCeEEEEEecCCcc
Q 047163 227 LAFGLGMEFGFNENMFQRASRLCERLKK-EKRLLIILDNIWIE 268 (658)
Q Consensus 227 i~~~l~~~~~~~~~~~~~~~~l~~~l~~-~k~~LlVlDdv~~~ 268 (658)
+... ..........+...+.. +++.+|++|++...
T Consensus 240 -----g~~~--~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l 275 (854)
T 1qvr_A 240 -----GAKY--RGEFEERLKAVIQEVVQSQGEVILFIDELHTV 275 (854)
T ss_dssp -------------CHHHHHHHHHHHHHTTCSSEEEEECCC---
T ss_pred -----cCcc--chHHHHHHHHHHHHHHhcCCCeEEEEecHHHH
Confidence 0000 11233344445555543 36789999999754
No 187
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.35 E-value=0.0004 Score=69.99 Aligned_cols=95 Identities=19% Similarity=0.185 Sum_probs=61.2
Q ss_pred cccccccchHHHHHHHHHHhc------------cCCccEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCCCC
Q 047163 152 KDFEAFDSKMEVFQDVMEALK------------DDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQNPD 219 (658)
Q Consensus 152 ~~~~~~~gr~~~~~~l~~~l~------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~ 219 (658)
.....++|.+..++.|.+.+. ....+-+.|+|++|+|||+||+.+++..... .+.++.+
T Consensus 15 ~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~-----~~~v~~~---- 85 (322)
T 3eie_A 15 VKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANST-----FFSVSSS---- 85 (322)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTCE-----EEEEEHH----
T ss_pred CCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCCC-----EEEEchH----
Confidence 456678999999998888762 1123568999999999999999999876421 2233321
Q ss_pred HHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhcCCeEEEEEecCCc
Q 047163 220 HHKIQDKLAFGLGMEFGFNENMFQRASRLCERLKKEKRLLIILDNIWI 267 (658)
Q Consensus 220 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~ 267 (658)
. +.... ..........++......+..+|+||+++.
T Consensus 86 --~----l~~~~------~g~~~~~~~~~f~~a~~~~~~vl~iDEid~ 121 (322)
T 3eie_A 86 --D----LVSKW------MGESEKLVKQLFAMARENKPSIIFIDQVDA 121 (322)
T ss_dssp --H----HHTTT------GGGHHHHHHHHHHHHHHTSSEEEEEECGGG
T ss_pred --H----Hhhcc------cchHHHHHHHHHHHHHhcCCeEEEechhhh
Confidence 1 11110 112233445555555545778999999974
No 188
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.34 E-value=0.00084 Score=69.58 Aligned_cols=96 Identities=16% Similarity=0.110 Sum_probs=60.1
Q ss_pred ccccccccchHHHHHHHHHHhc------------cCCccEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCCC
Q 047163 151 VKDFEAFDSKMEVFQDVMEALK------------DDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQNP 218 (658)
Q Consensus 151 ~~~~~~~~gr~~~~~~l~~~l~------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~ 218 (658)
+.....++|.+..++.|.+++. ....+-|.|+|.+|+|||++|+.+++.... ..+.++++.-.
T Consensus 111 ~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~~-----~~~~v~~~~l~ 185 (389)
T 3vfd_A 111 AVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNA-----TFFNISAASLT 185 (389)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTTC-----EEEEECSCCC-
T ss_pred CCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhcC-----cEEEeeHHHhh
Confidence 3456778999999999988773 122468999999999999999999877532 22333332221
Q ss_pred CHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhcCCeEEEEEecCCc
Q 047163 219 DHHKIQDKLAFGLGMEFGFNENMFQRASRLCERLKKEKRLLIILDNIWI 267 (658)
Q Consensus 219 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~ 267 (658)
... ..........++......+..+|+||+++.
T Consensus 186 ~~~----------------~g~~~~~~~~~~~~a~~~~~~il~iDEid~ 218 (389)
T 3vfd_A 186 SKY----------------VGEGEKLVRALFAVARELQPSIIFIDQVDS 218 (389)
T ss_dssp ----------------------CHHHHHHHHHHHHHSSSEEEEEETGGG
T ss_pred ccc----------------cchHHHHHHHHHHHHHhcCCeEEEEECchh
Confidence 100 001122334444444444668999999974
No 189
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.30 E-value=0.0011 Score=65.88 Aligned_cols=95 Identities=15% Similarity=0.234 Sum_probs=59.2
Q ss_pred cccccccchHHHHHHHHHHhcc-------------CCccEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCCC
Q 047163 152 KDFEAFDSKMEVFQDVMEALKD-------------DKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQNP 218 (658)
Q Consensus 152 ~~~~~~~gr~~~~~~l~~~l~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~ 218 (658)
.....++|.+..++.|.+.+.. ...+.|.|+|++|+|||+||+.+++.... . ++.++
T Consensus 12 ~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~-----~--~i~v~--- 81 (301)
T 3cf0_A 12 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQA-----N--FISIK--- 81 (301)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTC-----E--EEEEC---
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCC-----C--EEEEE---
Confidence 3455688988888777766531 34467999999999999999999987642 1 22222
Q ss_pred CHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhcCCeEEEEEecCCc
Q 047163 219 DHHKIQDKLAFGLGMEFGFNENMFQRASRLCERLKKEKRLLIILDNIWI 267 (658)
Q Consensus 219 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~ 267 (658)
...+..... +.. ......++.........+|+||+++.
T Consensus 82 -~~~l~~~~~---g~~-------~~~~~~~f~~a~~~~p~il~iDEid~ 119 (301)
T 3cf0_A 82 -GPELLTMWF---GES-------EANVREIFDKARQAAPCVLFFDELDS 119 (301)
T ss_dssp -HHHHHHHHH---TTC-------TTHHHHHHHHHHHTCSEEEEECSTTH
T ss_pred -hHHHHhhhc---Cch-------HHHHHHHHHHHHhcCCeEEEEEChHH
Confidence 223333222 111 11233444444435679999999974
No 190
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.24 E-value=0.00029 Score=72.05 Aligned_cols=52 Identities=21% Similarity=0.360 Sum_probs=43.9
Q ss_pred cccccccccchHHHHHHHHHHhccCCccEEEEEcCCCChHHHHHHHHHHHhh
Q 047163 150 QVKDFEAFDSKMEVFQDVMEALKDDKLNIIGVYGMGGVGKTTLVKQVAKQVM 201 (658)
Q Consensus 150 ~~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (658)
.|.....++|++..++.+..++..+..+.+.|+|++|+||||+|+.+++...
T Consensus 32 ~p~~~~~i~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 32 RPKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp CCSSTTTCCSCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCCHHHhhCCHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3455677899999999999998866555699999999999999999998854
No 191
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=97.23 E-value=0.0011 Score=66.69 Aligned_cols=52 Identities=19% Similarity=0.119 Sum_probs=42.8
Q ss_pred cccccccccchHHHHHHHHHHhccCCc-cEEEEEcCCCChHHHHHHHHHHHhh
Q 047163 150 QVKDFEAFDSKMEVFQDVMEALKDDKL-NIIGVYGMGGVGKTTLVKQVAKQVM 201 (658)
Q Consensus 150 ~~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (658)
.|.....++|++..++.+.+++..+.. .++.+.|++|+|||++|+.+++...
T Consensus 21 rP~~~~~ivg~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l~ 73 (324)
T 3u61_B 21 RPSTIDECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDVN 73 (324)
T ss_dssp CCCSTTTSCCCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHTT
T ss_pred CCCCHHHHhCcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHhC
Confidence 345667899999999999999875554 5777888899999999999988763
No 192
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.21 E-value=0.00058 Score=69.40 Aligned_cols=52 Identities=23% Similarity=0.393 Sum_probs=43.8
Q ss_pred cccccccccchHHHHHHHHHHhccCCccEEEEEcCCCChHHHHHHHHHHHhh
Q 047163 150 QVKDFEAFDSKMEVFQDVMEALKDDKLNIIGVYGMGGVGKTTLVKQVAKQVM 201 (658)
Q Consensus 150 ~~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (658)
.|.....++|.+..++.|...+..++.+.+.++|++|+||||+|+.++....
T Consensus 20 rp~~~~~~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~ 71 (340)
T 1sxj_C 20 RPETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIY 71 (340)
T ss_dssp CCSSGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred CCCcHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHc
Confidence 3455667889999999998888877766699999999999999999998864
No 193
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.20 E-value=0.00056 Score=72.68 Aligned_cols=49 Identities=27% Similarity=0.386 Sum_probs=42.3
Q ss_pred ccccccchHHHHHHHHHHhccCCccEEEEEcCCCChHHHHHHHHHHHhh
Q 047163 153 DFEAFDSKMEVFQDVMEALKDDKLNIIGVYGMGGVGKTTLVKQVAKQVM 201 (658)
Q Consensus 153 ~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (658)
....++||+.+++.++..+......-+.|+|.+|+|||++|+.+++...
T Consensus 178 ~ld~iiGr~~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l~ 226 (468)
T 3pxg_A 178 SLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQII 226 (468)
T ss_dssp CSCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHH
T ss_pred CCCCccCcHHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHH
Confidence 3556899999999999998765556778999999999999999999874
No 194
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.19 E-value=0.00066 Score=67.92 Aligned_cols=47 Identities=19% Similarity=0.170 Sum_probs=36.6
Q ss_pred cccchHHHHHHHHHHhc---------------cCCccEEEEEcCCCChHHHHHHHHHHHhhh
Q 047163 156 AFDSKMEVFQDVMEALK---------------DDKLNIIGVYGMGGVGKTTLVKQVAKQVME 202 (658)
Q Consensus 156 ~~~gr~~~~~~l~~~l~---------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 202 (658)
.++|.+..++.+.+.+. ......+.|+|++|+|||++|+.+++....
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~ 93 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHR 93 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHh
Confidence 47888888777765543 233457899999999999999999988754
No 195
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=97.16 E-value=0.0012 Score=66.92 Aligned_cols=52 Identities=19% Similarity=0.330 Sum_probs=42.0
Q ss_pred cccccccccchHHHHHHHHHHhcc-----CCccEEEEEcCCCChHHHHHHHHHHHhh
Q 047163 150 QVKDFEAFDSKMEVFQDVMEALKD-----DKLNIIGVYGMGGVGKTTLVKQVAKQVM 201 (658)
Q Consensus 150 ~~~~~~~~~gr~~~~~~l~~~l~~-----~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (658)
.|.....++|++..++.+..++.. .....|.|+|++|+|||++|+.+++...
T Consensus 24 ~p~~~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~~ 80 (338)
T 3pfi_A 24 RPSNFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMS 80 (338)
T ss_dssp CCCSGGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHhC
Confidence 344567799999999988888752 3445789999999999999999987753
No 196
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.15 E-value=0.0015 Score=66.65 Aligned_cols=95 Identities=15% Similarity=0.187 Sum_probs=61.3
Q ss_pred cccccccchHHHHHHHHHHhc-------------cCCccEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCCC
Q 047163 152 KDFEAFDSKMEVFQDVMEALK-------------DDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQNP 218 (658)
Q Consensus 152 ~~~~~~~gr~~~~~~l~~~l~-------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~ 218 (658)
....++.|-++.+++|.+.+. -...+=|.++|++|.|||.||+.+++..... .+.++.+.-.
T Consensus 145 v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~-----f~~v~~s~l~ 219 (405)
T 4b4t_J 145 STYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCK-----FIRVSGAELV 219 (405)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCE-----EEEEEGGGGS
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCC-----ceEEEhHHhh
Confidence 345667788887777765543 1234568899999999999999999987542 2333333211
Q ss_pred CHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhcCCeEEEEEecCCc
Q 047163 219 DHHKIQDKLAFGLGMEFGFNENMFQRASRLCERLKKEKRLLIILDNIWI 267 (658)
Q Consensus 219 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~ 267 (658)
... ....+.....++...+....++|.+|+++.
T Consensus 220 --------------sk~--vGese~~vr~lF~~Ar~~aP~IIFiDEiDa 252 (405)
T 4b4t_J 220 --------------QKY--IGEGSRMVRELFVMAREHAPSIIFMDEIDS 252 (405)
T ss_dssp --------------CSS--TTHHHHHHHHHHHHHHHTCSEEEEEESSSC
T ss_pred --------------ccc--cchHHHHHHHHHHHHHHhCCceEeeecchh
Confidence 010 122344555666666656789999999974
No 197
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.11 E-value=0.0021 Score=66.67 Aligned_cols=94 Identities=18% Similarity=0.297 Sum_probs=60.7
Q ss_pred ccccccchHHHHHHHHHHhc----c---------CCccEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCCCC
Q 047163 153 DFEAFDSKMEVFQDVMEALK----D---------DKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQNPD 219 (658)
Q Consensus 153 ~~~~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~ 219 (658)
...++.|-++.++.|.+.+. . ...+=|.++|++|.|||+||+.+++..... .+.++.+.-.+
T Consensus 179 ~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~-----~~~v~~s~l~s 253 (437)
T 4b4t_L 179 TFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGAN-----FIFSPASGIVD 253 (437)
T ss_dssp CSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCE-----EEEEEGGGTCC
T ss_pred ChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCC-----EEEEehhhhcc
Confidence 35567788887777765543 1 234678999999999999999999987542 23344332211
Q ss_pred HHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhcCCeEEEEEecCCc
Q 047163 220 HHKIQDKLAFGLGMEFGFNENMFQRASRLCERLKKEKRLLIILDNIWI 267 (658)
Q Consensus 220 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~ 267 (658)
.. ..........++...+....++|++|+++.
T Consensus 254 --------------k~--~Gese~~ir~~F~~A~~~~P~IifiDEiDa 285 (437)
T 4b4t_L 254 --------------KY--IGESARIIREMFAYAKEHEPCIIFMDEVDA 285 (437)
T ss_dssp --------------SS--SSHHHHHHHHHHHHHHHSCSEEEEEECCCS
T ss_pred --------------cc--chHHHHHHHHHHHHHHhcCCceeeeecccc
Confidence 10 122233455556655556789999999974
No 198
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.09 E-value=0.0024 Score=72.38 Aligned_cols=102 Identities=15% Similarity=0.273 Sum_probs=66.6
Q ss_pred ccccccchHHHHHHHHHHhccCCccEEEEEcCCCChHHHHHHHHHHHhhhcc----CCCEEEE-EEEcCCCCHHHHHHHH
Q 047163 153 DFEAFDSKMEVFQDVMEALKDDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDK----LFDKVVM-AEVTQNPDHHKIQDKL 227 (658)
Q Consensus 153 ~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~w-v~v~~~~~~~~~~~~i 227 (658)
....++||+.+++.+++.+......-+.|+|.+|+|||++|+.+++...... ..+..+| ++++.-
T Consensus 184 ~~d~~iGr~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l---------- 253 (758)
T 1r6b_X 184 GIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSL---------- 253 (758)
T ss_dssp CSCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC------------
T ss_pred CCCCccCCHHHHHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHH----------
Confidence 4567899999999999998866666789999999999999999998864321 1233332 121110
Q ss_pred HHhcCCCCCCCCCHHHHHHHHHHHHhcCCeEEEEEecCCcc
Q 047163 228 AFGLGMEFGFNENMFQRASRLCERLKKEKRLLIILDNIWIE 268 (658)
Q Consensus 228 ~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~ 268 (658)
. ... .......+....+.+.+...+..+|++||+...
T Consensus 254 ~---~~~-~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l 290 (758)
T 1r6b_X 254 L---AGT-KYRGDFEKRFKALLKQLEQDTNSILFIDEIHTI 290 (758)
T ss_dssp ----CCC-CCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTT
T ss_pred h---ccc-cccchHHHHHHHHHHHHHhcCCeEEEEechHHH
Confidence 0 000 112234445556666665446789999999754
No 199
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.07 E-value=0.0015 Score=68.92 Aligned_cols=49 Identities=22% Similarity=0.247 Sum_probs=39.3
Q ss_pred cccccccchHHHHHHHHHHhc------------cCCccEEEEEcCCCChHHHHHHHHHHHh
Q 047163 152 KDFEAFDSKMEVFQDVMEALK------------DDKLNIIGVYGMGGVGKTTLVKQVAKQV 200 (658)
Q Consensus 152 ~~~~~~~gr~~~~~~l~~~l~------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 200 (658)
.....++|.+..++.|.+.+. ....+-|.|+|++|+|||+||+.+++..
T Consensus 131 ~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~ 191 (444)
T 2zan_A 131 VKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEA 191 (444)
T ss_dssp CCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 445678899998888877652 1234679999999999999999999876
No 200
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.07 E-value=0.0012 Score=63.92 Aligned_cols=50 Identities=24% Similarity=0.282 Sum_probs=36.4
Q ss_pred cccccccchHHHHHHHHHHh---cc---------CCccEEEEEcCCCChHHHHHHHHHHHhh
Q 047163 152 KDFEAFDSKMEVFQDVMEAL---KD---------DKLNIIGVYGMGGVGKTTLVKQVAKQVM 201 (658)
Q Consensus 152 ~~~~~~~gr~~~~~~l~~~l---~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (658)
.....++|.+..++.+.+.+ .. ...+-+.|+|++|+||||+|+.+++...
T Consensus 9 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 9 TTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp CCGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcC
Confidence 44567888887777665443 21 1234588999999999999999998764
No 201
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.02 E-value=0.0017 Score=67.26 Aligned_cols=95 Identities=16% Similarity=0.152 Sum_probs=61.0
Q ss_pred cccccccchHHHHHHHHHHhc----c---------CCccEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCCC
Q 047163 152 KDFEAFDSKMEVFQDVMEALK----D---------DKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQNP 218 (658)
Q Consensus 152 ~~~~~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~ 218 (658)
....++.|-++.++.|.+.+. . ...+=|.++|++|.|||.||+.+++..... .+.++.+.-
T Consensus 178 ~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~-----f~~v~~s~l- 251 (434)
T 4b4t_M 178 ETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNAT-----FLKLAAPQL- 251 (434)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCE-----EEEEEGGGG-
T ss_pred CChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCC-----EEEEehhhh-
Confidence 345677888888888776542 1 235678999999999999999999987542 233333221
Q ss_pred CHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhcCCeEEEEEecCCc
Q 047163 219 DHHKIQDKLAFGLGMEFGFNENMFQRASRLCERLKKEKRLLIILDNIWI 267 (658)
Q Consensus 219 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~ 267 (658)
.... ..........++...+....++|++|+++.
T Consensus 252 -------------~~~~--vGese~~ir~lF~~A~~~aP~IifiDEiDa 285 (434)
T 4b4t_M 252 -------------VQMY--IGEGAKLVRDAFALAKEKAPTIIFIDELDA 285 (434)
T ss_dssp -------------CSSC--SSHHHHHHHHHHHHHHHHCSEEEEEECTHH
T ss_pred -------------hhcc--cchHHHHHHHHHHHHHhcCCeEEeecchhh
Confidence 1110 112233445555555545689999999963
No 202
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.02 E-value=0.0024 Score=66.10 Aligned_cols=94 Identities=18% Similarity=0.206 Sum_probs=61.1
Q ss_pred ccccccchHHHHHHHHHHhc----c---------CCccEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCCCC
Q 047163 153 DFEAFDSKMEVFQDVMEALK----D---------DKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQNPD 219 (658)
Q Consensus 153 ~~~~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~ 219 (658)
...++.|-++.++.|.+.+. . ...+=|.++|++|.|||+||+.+++..... .+.++.++-.+
T Consensus 170 ~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~-----~~~v~~~~l~~ 244 (428)
T 4b4t_K 170 TYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAA-----FIRVNGSEFVH 244 (428)
T ss_dssp CGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCE-----EEEEEGGGTCC
T ss_pred CHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCC-----eEEEecchhhc
Confidence 45567788888877766543 1 234568999999999999999999887532 23344332211
Q ss_pred HHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhcCCeEEEEEecCCc
Q 047163 220 HHKIQDKLAFGLGMEFGFNENMFQRASRLCERLKKEKRLLIILDNIWI 267 (658)
Q Consensus 220 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~ 267 (658)
.. ..........++...+....++|++|+++.
T Consensus 245 --------------~~--~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~ 276 (428)
T 4b4t_K 245 --------------KY--LGEGPRMVRDVFRLARENAPSIIFIDEVDS 276 (428)
T ss_dssp --------------SS--CSHHHHHHHHHHHHHHHTCSEEEEEECTHH
T ss_pred --------------cc--cchhHHHHHHHHHHHHHcCCCeeechhhhh
Confidence 00 122234455566666556789999999963
No 203
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.01 E-value=0.00089 Score=68.34 Aligned_cols=95 Identities=19% Similarity=0.186 Sum_probs=58.9
Q ss_pred cccccccchHHHHHHHHHHhc------------cCCccEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCCCC
Q 047163 152 KDFEAFDSKMEVFQDVMEALK------------DDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQNPD 219 (658)
Q Consensus 152 ~~~~~~~gr~~~~~~l~~~l~------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~ 219 (658)
.....++|.+..++.|.+.+. ....+-|.|+|++|+|||+||+.+++.... ..+.++.+
T Consensus 48 ~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~-----~~~~v~~~---- 118 (355)
T 2qp9_X 48 VKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANS-----TFFSVSSS---- 118 (355)
T ss_dssp CCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHTC-----EEEEEEHH----
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCC-----CEEEeeHH----
Confidence 345668899888888877662 012245889999999999999999988742 12233322
Q ss_pred HHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhcCCeEEEEEecCCc
Q 047163 220 HHKIQDKLAFGLGMEFGFNENMFQRASRLCERLKKEKRLLIILDNIWI 267 (658)
Q Consensus 220 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~ 267 (658)
. +.... ..........++......+..+|+||+++.
T Consensus 119 --~----l~~~~------~g~~~~~~~~~f~~a~~~~~~vl~iDEid~ 154 (355)
T 2qp9_X 119 --D----LVSKW------MGESEKLVKQLFAMARENKPSIIFIDQVDA 154 (355)
T ss_dssp --H----HHSCC---------CHHHHHHHHHHHHHTSSEEEEEECGGG
T ss_pred --H----Hhhhh------cchHHHHHHHHHHHHHHcCCeEEEEechHh
Confidence 1 11111 011123444455555445789999999974
No 204
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.94 E-value=0.0029 Score=61.82 Aligned_cols=94 Identities=15% Similarity=0.135 Sum_probs=52.4
Q ss_pred ccccccchHHHHHHHHHHhc----c---------CCccEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCCCC
Q 047163 153 DFEAFDSKMEVFQDVMEALK----D---------DKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQNPD 219 (658)
Q Consensus 153 ~~~~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~ 219 (658)
...++.|-++.++.|.+.+. . .-.+=+.|+|++|+||||||+.++..... ..+.+..+.-.+
T Consensus 8 ~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~-----~~i~i~g~~l~~ 82 (274)
T 2x8a_A 8 TWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGL-----NFISVKGPELLN 82 (274)
T ss_dssp ----CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTC-----EEEEEETTTTCS
T ss_pred CHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCC-----CEEEEEcHHHHh
Confidence 34556777777776665432 0 11123899999999999999999987643 234443221110
Q ss_pred HHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhcCCeEEEEEecCCc
Q 047163 220 HHKIQDKLAFGLGMEFGFNENMFQRASRLCERLKKEKRLLIILDNIWI 267 (658)
Q Consensus 220 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~ 267 (658)
. . ..........+++.......+++++|+++.
T Consensus 83 ~---------------~-~~~~~~~i~~vf~~a~~~~p~i~~~Deid~ 114 (274)
T 2x8a_A 83 M---------------Y-VGESERAVRQVFQRAKNSAPCVIFFDEVDA 114 (274)
T ss_dssp S---------------T-THHHHHHHHHHHHHHHHTCSEEEEEETCTT
T ss_pred h---------------h-hhHHHHHHHHHHHHHHhcCCCeEeeehhhh
Confidence 0 0 001122334444444334678999999974
No 205
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.93 E-value=0.0034 Score=64.32 Aligned_cols=95 Identities=17% Similarity=0.224 Sum_probs=60.8
Q ss_pred cccccccchHHHHHHHHHHhc----c---------CCccEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCCC
Q 047163 152 KDFEAFDSKMEVFQDVMEALK----D---------DKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQNP 218 (658)
Q Consensus 152 ~~~~~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~ 218 (658)
....++-|-++.+++|.+.+. . ...+=|.++|++|.|||.||+.+++..... | +.++.++-
T Consensus 179 v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~--f---i~v~~s~l- 252 (437)
T 4b4t_I 179 ESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSAT--F---LRIVGSEL- 252 (437)
T ss_dssp CCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCE--E---EEEESGGG-
T ss_pred CcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCC--E---EEEEHHHh-
Confidence 345566788877777765442 1 234679999999999999999999987642 2 23332211
Q ss_pred CHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhcCCeEEEEEecCCc
Q 047163 219 DHHKIQDKLAFGLGMEFGFNENMFQRASRLCERLKKEKRLLIILDNIWI 267 (658)
Q Consensus 219 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~ 267 (658)
.... ..+.+.....++...+....++|++|+++.
T Consensus 253 -------------~sk~--vGesek~ir~lF~~Ar~~aP~IIfiDEiDa 286 (437)
T 4b4t_I 253 -------------IQKY--LGDGPRLCRQIFKVAGENAPSIVFIDEIDA 286 (437)
T ss_dssp -------------CCSS--SSHHHHHHHHHHHHHHHTCSEEEEEEEESS
T ss_pred -------------hhcc--CchHHHHHHHHHHHHHhcCCcEEEEehhhh
Confidence 1110 122344555666666556789999999974
No 206
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.93 E-value=0.003 Score=65.40 Aligned_cols=93 Identities=18% Similarity=0.204 Sum_probs=60.7
Q ss_pred cccccchHHHHHHHHHHhc-------------cCCccEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCCCCH
Q 047163 154 FEAFDSKMEVFQDVMEALK-------------DDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQNPDH 220 (658)
Q Consensus 154 ~~~~~gr~~~~~~l~~~l~-------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~ 220 (658)
..++.|-++.+++|.+.+. -...+=|.++|++|.|||.||+.+++..... .+.++.+.-.
T Consensus 208 ~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~-----fi~vs~s~L~-- 280 (467)
T 4b4t_H 208 YSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDAT-----FIRVIGSELV-- 280 (467)
T ss_dssp CSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCE-----EEEEEGGGGC--
T ss_pred HHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCC-----eEEEEhHHhh--
Confidence 4467788888777766542 1345678999999999999999999987542 2333332211
Q ss_pred HHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhcCCeEEEEEecCCc
Q 047163 221 HKIQDKLAFGLGMEFGFNENMFQRASRLCERLKKEKRLLIILDNIWI 267 (658)
Q Consensus 221 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~ 267 (658)
... ....+.....++...+....++|++|+++.
T Consensus 281 ------------sk~--vGesek~ir~lF~~Ar~~aP~IIfiDEiDa 313 (467)
T 4b4t_H 281 ------------QKY--VGEGARMVRELFEMARTKKACIIFFDEIDA 313 (467)
T ss_dssp ------------CCS--SSHHHHHHHHHHHHHHHTCSEEEEEECCTT
T ss_pred ------------ccc--CCHHHHHHHHHHHHHHhcCCceEeeccccc
Confidence 010 122234455566666556789999999974
No 207
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.85 E-value=0.0017 Score=63.64 Aligned_cols=45 Identities=20% Similarity=0.185 Sum_probs=32.2
Q ss_pred cccchHHHHHHHHH-------Hhc---cCCccEEEEEcCCCChHHHHHHHHHHHh
Q 047163 156 AFDSKMEVFQDVME-------ALK---DDKLNIIGVYGMGGVGKTTLVKQVAKQV 200 (658)
Q Consensus 156 ~~~gr~~~~~~l~~-------~l~---~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 200 (658)
.++|....++.++. .+. ....+.+.|+|++|+|||++|+.+++..
T Consensus 34 ~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~ 88 (272)
T 1d2n_A 34 GIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEES 88 (272)
T ss_dssp CCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHh
Confidence 35566555444444 232 3445688999999999999999999875
No 208
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.84 E-value=0.0019 Score=64.52 Aligned_cols=105 Identities=21% Similarity=0.328 Sum_probs=60.0
Q ss_pred cccchHHHHHHHHHHhccC---------CccEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCCCCHHHHHHH
Q 047163 156 AFDSKMEVFQDVMEALKDD---------KLNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQNPDHHKIQDK 226 (658)
Q Consensus 156 ~~~gr~~~~~~l~~~l~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~ 226 (658)
.++|.+..++.+...+... ....+.|+|++|+|||++|+.+++..... -...+.++++...... ....
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~--~~~~~~~~~~~~~~~~-~~~~ 94 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDT--EEAMIRIDMTEYMEKH-AVSR 94 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSC--GGGEEEEEGGGCCSTT-HHHH
T ss_pred hcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCC--CcceEEeecccccccc-cHHH
Confidence 4678888888887776521 13479999999999999999999986432 1234555655433322 1222
Q ss_pred HHHhcCCCCCCCCCHHHHHHHHHHHHhcCCeEEEEEecCCcc
Q 047163 227 LAFGLGMEFGFNENMFQRASRLCERLKKEKRLLIILDNIWIE 268 (658)
Q Consensus 227 i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~ 268 (658)
++ +........ . ....+...+......+++||+++..
T Consensus 95 l~---g~~~~~~~~-~-~~~~~~~~~~~~~~~vl~lDEi~~l 131 (311)
T 4fcw_A 95 LI---GAPPGYVGY-E-EGGQLTEAVRRRPYSVILFDAIEKA 131 (311)
T ss_dssp HH---CCCTTSTTT-T-TCCHHHHHHHHCSSEEEEEETGGGS
T ss_pred hc---CCCCccccc-c-ccchHHHHHHhCCCeEEEEeChhhc
Confidence 22 211110000 0 0012333343345579999999643
No 209
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.84 E-value=0.0024 Score=60.95 Aligned_cols=62 Identities=16% Similarity=0.203 Sum_probs=43.6
Q ss_pred ccccccch---HHHHHHHHHHhccCCccEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcC
Q 047163 153 DFEAFDSK---MEVFQDVMEALKDDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQ 216 (658)
Q Consensus 153 ~~~~~~gr---~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~ 216 (658)
....|+|+ +..++.+..+......+.+.|+|++|+||||+|+.+++..... ...+.|++++.
T Consensus 26 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~~~--~~~~~~~~~~~ 90 (242)
T 3bos_A 26 TFTSYYPAAGNDELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARANEL--ERRSFYIPLGI 90 (242)
T ss_dssp STTTSCC--CCHHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEEEGGG
T ss_pred ChhhccCCCCCHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEEHHH
Confidence 44556663 3556666666555566789999999999999999999887643 33456666543
No 210
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=96.81 E-value=0.0041 Score=64.51 Aligned_cols=121 Identities=14% Similarity=0.135 Sum_probs=69.1
Q ss_pred HHhcCCCCCcEEEccCCCCCCCccccccCCCcceEEccCCCCCCc--hhhhccCCCcEEEccCccCCccc-hhhcCCCCC
Q 047163 519 LFFEGTKELKDLSLTRIPFSSLPSSLGSLINLGTLCLEDCPRNDI--AILRQLKKLEILRLRHSYTERLP-LEIGQLTRL 595 (658)
Q Consensus 519 ~~~~~~~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~l--~~~~~l~~L~~L~l~~~~~~~lp-~~~~~l~~L 595 (658)
..|..+..++.+.+....+.. ..+..+.+|+.+.+..+ +..+ ..+..+.+|+.++|..+ +..++ ..+.++.+|
T Consensus 270 ~~F~~~~~l~~~~~~~~~i~~--~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L 345 (394)
T 4fs7_A 270 SLFYNCSGLKKVIYGSVIVPE--KTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSL 345 (394)
T ss_dssp CTTTTCTTCCEEEECSSEECT--TTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTC
T ss_pred cccccccccceeccCceeecc--ccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCC
Confidence 334444455544444332211 23445666777776543 4444 45666777777777543 55554 456677777
Q ss_pred cEEcccCcccccccChhhhcCCCCCcEEEcccCCCCcccccCCCccchhhcCCCCcc
Q 047163 596 RLLDLSNCWRLKVIAPNVISKLSRLEELYMGNSFPKWDKVEGGSNASLAELKGLSKL 652 (658)
Q Consensus 596 ~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L 652 (658)
+.+.+..+ ++.++...+.++++|+.+.+..+ +. .....+.++++|+.+
T Consensus 346 ~~i~lp~~--l~~I~~~aF~~C~~L~~i~lp~~------~~-~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 346 SNINFPLS--LRKIGANAFQGCINLKKVELPKR------LE-QYRYDFEDTTKFKWI 393 (394)
T ss_dssp CEECCCTT--CCEECTTTBTTCTTCCEEEEEGG------GG-GGGGGBCTTCEEEEE
T ss_pred CEEEECcc--ccEehHHHhhCCCCCCEEEECCC------CE-EhhheecCCCCCcEE
Confidence 77777653 66676666777777777777542 21 223456666666654
No 211
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=96.74 E-value=0.0056 Score=64.49 Aligned_cols=94 Identities=20% Similarity=0.198 Sum_probs=55.9
Q ss_pred ccccccchHHHHHHHHHHh---ccC---------CccEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCCCCH
Q 047163 153 DFEAFDSKMEVFQDVMEAL---KDD---------KLNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQNPDH 220 (658)
Q Consensus 153 ~~~~~~gr~~~~~~l~~~l---~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~ 220 (658)
...+++|.++.++++.+.. ... -.+-|.|+|++|+|||+||+.+++..... .+.++.+.-...
T Consensus 14 ~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~-----f~~is~~~~~~~ 88 (476)
T 2ce7_A 14 TFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVP-----FFHISGSDFVEL 88 (476)
T ss_dssp CGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCC-----EEEEEGGGTTTC
T ss_pred CHHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCC-----eeeCCHHHHHHH
Confidence 3456788887766655443 221 13458899999999999999999876421 233443322110
Q ss_pred HHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhcCCeEEEEEecCCc
Q 047163 221 HKIQDKLAFGLGMEFGFNENMFQRASRLCERLKKEKRLLIILDNIWI 267 (658)
Q Consensus 221 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~ 267 (658)
+ ..........++.....+..++|+||+++.
T Consensus 89 ----------~------~g~~~~~~r~lf~~A~~~~p~ILfIDEid~ 119 (476)
T 2ce7_A 89 ----------F------VGVGAARVRDLFAQAKAHAPCIVFIDEIDA 119 (476)
T ss_dssp ----------C------TTHHHHHHHHHHHHHHHTCSEEEEEETGGG
T ss_pred ----------H------hcccHHHHHHHHHHHHhcCCCEEEEechhh
Confidence 0 011122333444444445789999999964
No 212
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.70 E-value=0.0012 Score=57.69 Aligned_cols=45 Identities=16% Similarity=0.193 Sum_probs=34.8
Q ss_pred cccchHHHHHHHHHHhc--cCCccEEEEEcCCCChHHHHHHHHHHHh
Q 047163 156 AFDSKMEVFQDVMEALK--DDKLNIIGVYGMGGVGKTTLVKQVAKQV 200 (658)
Q Consensus 156 ~~~gr~~~~~~l~~~l~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 200 (658)
.++|+...++++.+.+. .....-|.|+|..|+|||++|+.+++..
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 46888888888888775 2233457899999999999999998765
No 213
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.70 E-value=0.0037 Score=65.71 Aligned_cols=98 Identities=19% Similarity=0.325 Sum_probs=54.8
Q ss_pred ccccc-chH--HHHHHHHHHhccCC-ccEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCCCCHHHHHHHHHH
Q 047163 154 FEAFD-SKM--EVFQDVMEALKDDK-LNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQNPDHHKIQDKLAF 229 (658)
Q Consensus 154 ~~~~~-gr~--~~~~~l~~~l~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~ 229 (658)
...|+ |.. .....+........ ...+.|+|++|+||||||+.+++.......-..+++++... +..++..
T Consensus 104 fd~fv~g~~n~~a~~~~~~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~------~~~~~~~ 177 (440)
T 2z4s_A 104 FENFVVGPGNSFAYHAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEK------FLNDLVD 177 (440)
T ss_dssp GGGCCCCTTTHHHHHHHHHHHHSTTSSCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHH------HHHHHHH
T ss_pred hhhcCCCCchHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHH------HHHHHHH
Confidence 44555 533 23334444433322 66899999999999999999999875431112345555432 3333333
Q ss_pred hcCCCCCCCCCHHHHHHHHHHHHhcCCeEEEEEecCCc
Q 047163 230 GLGMEFGFNENMFQRASRLCERLKKEKRLLIILDNIWI 267 (658)
Q Consensus 230 ~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~ 267 (658)
.+... . ...+...+. .+.-+|++||++.
T Consensus 178 ~~~~~-----~----~~~~~~~~~-~~~~vL~IDEi~~ 205 (440)
T 2z4s_A 178 SMKEG-----K----LNEFREKYR-KKVDILLIDDVQF 205 (440)
T ss_dssp HHHTT-----C----HHHHHHHHT-TTCSEEEEECGGG
T ss_pred HHHcc-----c----HHHHHHHhc-CCCCEEEEeCccc
Confidence 33211 1 112333333 2567999999964
No 214
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.66 E-value=0.0026 Score=72.04 Aligned_cols=49 Identities=27% Similarity=0.386 Sum_probs=42.5
Q ss_pred ccccccchHHHHHHHHHHhccCCccEEEEEcCCCChHHHHHHHHHHHhh
Q 047163 153 DFEAFDSKMEVFQDVMEALKDDKLNIIGVYGMGGVGKTTLVKQVAKQVM 201 (658)
Q Consensus 153 ~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (658)
....++||+++++.+...+......-+.++|.+|+|||++|+.+++...
T Consensus 178 ~ld~iiG~~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~l~ 226 (758)
T 3pxi_A 178 SLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQII 226 (758)
T ss_dssp CSCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHH
T ss_pred CCCCccCchHHHHHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHHHh
Confidence 3557899999999999998765556788999999999999999999863
No 215
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.66 E-value=0.0083 Score=56.29 Aligned_cols=84 Identities=20% Similarity=0.194 Sum_probs=50.3
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCCCCHHHHHHHHHHhcCCC-----------CCCCCCH-HHH
Q 047163 177 NIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQNPDHHKIQDKLAFGLGME-----------FGFNENM-FQR 244 (658)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~-----------~~~~~~~-~~~ 244 (658)
.++.|+|.+|+|||||+..+.. .. -..++|++.....+...+.+ +....+.. ....... .+.
T Consensus 21 ~~~~i~G~~GsGKTtl~~~l~~--~~---~~~v~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (220)
T 2cvh_A 21 VLTQVYGPYASGKTTLALQTGL--LS---GKKVAYVDTEGGFSPERLVQ-MAETRGLNPEEALSRFILFTPSDFKEQRRV 94 (220)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH--HH---CSEEEEEESSCCCCHHHHHH-HHHTTTCCHHHHHHHEEEECCTTTSHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH--Hc---CCcEEEEECCCCCCHHHHHH-HHHhcCCChHHHhhcEEEEecCCHHHHHHH
Confidence 4899999999999999999998 21 24678888776556555443 33332221 1101111 122
Q ss_pred HHHHHHHHhcCCeEEEEEecCCc
Q 047163 245 ASRLCERLKKEKRLLIILDNIWI 267 (658)
Q Consensus 245 ~~~l~~~l~~~k~~LlVlDdv~~ 267 (658)
...+...+. .+.-+||+|.+..
T Consensus 95 ~~~~~~l~~-~~~~lliiD~~~~ 116 (220)
T 2cvh_A 95 IGSLKKTVD-SNFALVVVDSITA 116 (220)
T ss_dssp HHHHHHHCC-TTEEEEEEECCCC
T ss_pred HHHHHHHhh-cCCCEEEEcCcHH
Confidence 333333332 2477999999864
No 216
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.64 E-value=0.008 Score=57.43 Aligned_cols=90 Identities=14% Similarity=0.084 Sum_probs=55.0
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHhhhcc----CCCEEEEEEEcCCCCHHHHHHHHHHhcCCCC---------CCCCCHHH
Q 047163 177 NIIGVYGMGGVGKTTLVKQVAKQVMEDK----LFDKVVMAEVTQNPDHHKIQDKLAFGLGMEF---------GFNENMFQ 243 (658)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~---------~~~~~~~~ 243 (658)
.++.|+|.+|+|||||++.+........ .-..++|++....+....+. .++..++... ....+..+
T Consensus 25 ~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~ 103 (243)
T 1n0w_A 25 SITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLL-AVAERYGLSGSDVLDNVAYARAFNTDH 103 (243)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHH-HHHHHcCCCHHHHhhCeEEEecCCHHH
Confidence 4899999999999999999998642211 13578898877655554443 3334443321 00112222
Q ss_pred ---HHHHHHHHHhcCCeEEEEEecCCc
Q 047163 244 ---RASRLCERLKKEKRLLIILDNIWI 267 (658)
Q Consensus 244 ---~~~~l~~~l~~~k~~LlVlDdv~~ 267 (658)
....+...+...+.-+||+|++..
T Consensus 104 ~~~~~~~~~~~~~~~~~~lliiD~~~~ 130 (243)
T 1n0w_A 104 QTQLLYQASAMMVESRYALLIVDSATA 130 (243)
T ss_dssp HHHHHHHHHHHHHHSCEEEEEEETSSG
T ss_pred HHHHHHHHHHHHhcCCceEEEEeCchH
Confidence 233355555545678999999864
No 217
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.63 E-value=0.0016 Score=64.24 Aligned_cols=68 Identities=22% Similarity=0.282 Sum_probs=44.7
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEE--cCCCCHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhc
Q 047163 177 NIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEV--TQNPDHHKIQDKLAFGLGMEFGFNENMFQRASRLCERLKK 254 (658)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v--~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 254 (658)
+++.|+|++|+|||+||.++..... ..+.|+++ .+..+. . ..+..+....+.+.+..
T Consensus 124 sviLI~GpPGsGKTtLAlqlA~~~G-----~~VlyIs~~~eE~v~~---------------~-~~~le~~l~~i~~~l~~ 182 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHALGEALG-----GKDKYATVRFGEPLSG---------------Y-NTDFNVFVDDIARAMLQ 182 (331)
T ss_dssp EEEEEECSCSSSHHHHHHHHHHHHH-----TTSCCEEEEBSCSSTT---------------C-BCCHHHHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhCC-----CCEEEEEecchhhhhh---------------h-hcCHHHHHHHHHHHHhh
Confidence 4678999999999999999988621 12346666 222110 0 12345555666777764
Q ss_pred CCeEEEEEecCCc
Q 047163 255 EKRLLIILDNIWI 267 (658)
Q Consensus 255 ~k~~LlVlDdv~~ 267 (658)
.+ +||+|++..
T Consensus 183 -~~-LLVIDsI~a 193 (331)
T 2vhj_A 183 -HR-VIVIDSLKN 193 (331)
T ss_dssp -CS-EEEEECCTT
T ss_pred -CC-EEEEecccc
Confidence 44 999999864
No 218
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.62 E-value=0.008 Score=60.67 Aligned_cols=84 Identities=19% Similarity=0.209 Sum_probs=55.4
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCCCCHHHHHHHHHHhcCCCCC-----CCCCHHHHHHHHHHH
Q 047163 177 NIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQNPDHHKIQDKLAFGLGMEFG-----FNENMFQRASRLCER 251 (658)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~~~ 251 (658)
.++.|.|.+|+||||||.++....... =..++|++....++.. .+..++.... ...+.++....+...
T Consensus 62 ~i~~I~GppGsGKSTLal~la~~~~~~--gg~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l 134 (356)
T 3hr8_A 62 RIVEIFGQESSGKTTLALHAIAEAQKM--GGVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIVDEL 134 (356)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHT--TCCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHHHHH
Confidence 589999999999999999999876542 2356788877666654 3344443321 123444455555555
Q ss_pred HhcCCeEEEEEecCCc
Q 047163 252 LKKEKRLLIILDNIWI 267 (658)
Q Consensus 252 l~~~k~~LlVlDdv~~ 267 (658)
++..+.-++|+|.+..
T Consensus 135 ~~~~~~dlvVIDSi~~ 150 (356)
T 3hr8_A 135 VRSGVVDLIVVDSVAA 150 (356)
T ss_dssp HHTSCCSEEEEECTTT
T ss_pred hhhcCCCeEEehHhhh
Confidence 5545566899999864
No 219
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.58 E-value=0.0057 Score=61.51 Aligned_cols=49 Identities=29% Similarity=0.388 Sum_probs=32.9
Q ss_pred HHHHHHHhccC--CccEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEE
Q 047163 164 FQDVMEALKDD--KLNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEV 214 (658)
Q Consensus 164 ~~~l~~~l~~~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v 214 (658)
...+....... ....+.|+|++|+||||||+.+++..... -..++++++
T Consensus 23 ~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~--~~~~~~i~~ 73 (324)
T 1l8q_A 23 YEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKR--GYRVIYSSA 73 (324)
T ss_dssp HHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHT--TCCEEEEEH
T ss_pred HHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHC--CCEEEEEEH
Confidence 34444444432 34678999999999999999999987543 123445553
No 220
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.56 E-value=0.012 Score=60.57 Aligned_cols=124 Identities=18% Similarity=0.161 Sum_probs=83.9
Q ss_pred CCCCCceEEEecCCCCCCccchHHhcCCCCCcEEEccCCCCCCCc-cccccCCCcceEEccCCCCCCc--hhhhccCCCc
Q 047163 497 QCPNLQLFLFFGKGYGPMQISDLFFEGTKELKDLSLTRIPFSSLP-SSLGSLINLGTLCLEDCPRNDI--AILRQLKKLE 573 (658)
Q Consensus 497 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp-~~i~~l~~L~~L~L~~~~~~~l--~~~~~l~~L~ 573 (658)
.+.+|+.+.+..+ ...+....|.++..|+.+.+..+ +..++ ..+..+.+|+.+.+..+ +..+ ..+..+.+|+
T Consensus 215 ~~~~l~~i~~~~~---~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~ 289 (379)
T 4h09_A 215 YGKNLKKITITSG---VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLT 289 (379)
T ss_dssp TCSSCSEEECCTT---CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCC
T ss_pred cccccceeeeccc---eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccc
Confidence 4566666665443 34455556677777887777654 44443 34556777888877643 4444 5667778888
Q ss_pred EEEccCccCCccc-hhhcCCCCCcEEcccCcccccccChhhhcCCCCCcEEEccc
Q 047163 574 ILRLRHSYTERLP-LEIGQLTRLRLLDLSNCWRLKVIAPNVISKLSRLEELYMGN 627 (658)
Q Consensus 574 ~L~l~~~~~~~lp-~~~~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~ 627 (658)
.+.+.++.+..++ ..+.++.+|+.+.+.. +++.+....+.++++|+.+.+..
T Consensus 290 ~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 290 KVVMDNSAIETLEPRVFMDCVKLSSVTLPT--ALKTIQVYAFKNCKALSTISYPK 342 (379)
T ss_dssp EEEECCTTCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCCCCCCT
T ss_pred cccccccccceehhhhhcCCCCCCEEEcCc--cccEEHHHHhhCCCCCCEEEECC
Confidence 8888777777775 4567788888888865 37777777777888888887754
No 221
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.56 E-value=0.028 Score=58.12 Aligned_cols=79 Identities=8% Similarity=0.137 Sum_probs=35.7
Q ss_pred ccCCCcceEEccCCCCCCc--hhhhccCCCcEEEccCccCCccc-hhhcCCCCCcEEcccCcccccccChhhhcCCCCCc
Q 047163 545 GSLINLGTLCLEDCPRNDI--AILRQLKKLEILRLRHSYTERLP-LEIGQLTRLRLLDLSNCWRLKVIAPNVISKLSRLE 621 (658)
Q Consensus 545 ~~l~~L~~L~L~~~~~~~l--~~~~~l~~L~~L~l~~~~~~~lp-~~~~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~ 621 (658)
.++.+|+.+.+.. .+..+ ..|..+.+|+.+.|..+ +..++ ..+.++.+|+.+.+.. +++.+....+.++++|+
T Consensus 285 ~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~--sv~~I~~~aF~~C~~L~ 360 (394)
T 4gt6_A 285 MNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPS--SVTKIPESAFSNCTALN 360 (394)
T ss_dssp TTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECT--TCCBCCGGGGTTCTTCC
T ss_pred ccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECc--ccCEEhHhHhhCCCCCC
Confidence 3344444444432 22333 34444455555555432 33332 2344555555555543 24445444455555555
Q ss_pred EEEccc
Q 047163 622 ELYMGN 627 (658)
Q Consensus 622 ~L~l~~ 627 (658)
.+.+.+
T Consensus 361 ~i~~~~ 366 (394)
T 4gt6_A 361 NIEYSG 366 (394)
T ss_dssp EEEESS
T ss_pred EEEECC
Confidence 555544
No 222
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=96.54 E-value=0.0089 Score=61.90 Aligned_cols=148 Identities=12% Similarity=0.093 Sum_probs=108.2
Q ss_pred CCCCCceEEEecCCCCCCccchHHhcCCCCCcEEEccCCCCCCCccccccCCCcceEEccCCCCCCchhhhccCCCcEEE
Q 047163 497 QCPNLQLFLFFGKGYGPMQISDLFFEGTKELKDLSLTRIPFSSLPSSLGSLINLGTLCLEDCPRNDIAILRQLKKLEILR 576 (658)
Q Consensus 497 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~l~~~~~l~~L~~L~ 576 (658)
.+.+|+.+.+... ...+....|..+..|+.+.+..+...--...+..+..++.+......+.. ..+..+.+|+.+.
T Consensus 228 ~~~~l~~i~ip~~---~~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~i~~-~~F~~~~~L~~i~ 303 (394)
T 4fs7_A 228 SKTGVKNIIIPDS---FTELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVIVPE-KTFYGCSSLTEVK 303 (394)
T ss_dssp TTCCCCEEEECTT---CCEECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSEECT-TTTTTCTTCCEEE
T ss_pred ccCCCceEEECCC---ceecccccccccccceeEEcCCCcceeeccccccccccceeccCceeecc-ccccccccccccc
Confidence 5678888877654 34456666788889999998876543334456677888888776543211 4567778899998
Q ss_pred ccCccCCccc-hhhcCCCCCcEEcccCcccccccChhhhcCCCCCcEEEcccCCCCcccccCCCccchhhcCCCCccccC
Q 047163 577 LRHSYTERLP-LEIGQLTRLRLLDLSNCWRLKVIAPNVISKLSRLEELYMGNSFPKWDKVEGGSNASLAELKGLSKLDTG 655 (658)
Q Consensus 577 l~~~~~~~lp-~~~~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 655 (658)
+..+ +..++ ..+.++.+|+.+.+.. .++.++...+.++++|+.+.+..+ +.......|.+|.+|+.+++.
T Consensus 304 l~~~-i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~c~~L~~i~lp~~------l~~I~~~aF~~C~~L~~i~lp 374 (394)
T 4fs7_A 304 LLDS-VKFIGEEAFESCTSLVSIDLPY--LVEEIGKRSFRGCTSLSNINFPLS------LRKIGANAFQGCINLKKVELP 374 (394)
T ss_dssp ECTT-CCEECTTTTTTCTTCCEECCCT--TCCEECTTTTTTCTTCCEECCCTT------CCEECTTTBTTCTTCCEEEEE
T ss_pred cccc-cceechhhhcCCCCCCEEEeCC--cccEEhHHhccCCCCCCEEEECcc------ccEehHHHhhCCCCCCEEEEC
Confidence 8764 66665 4577889999999976 478888888899999999998753 444556788999999998875
Q ss_pred CC
Q 047163 656 HN 657 (658)
Q Consensus 656 ~N 657 (658)
+|
T Consensus 375 ~~ 376 (394)
T 4fs7_A 375 KR 376 (394)
T ss_dssp GG
T ss_pred CC
Confidence 43
No 223
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.51 E-value=0.011 Score=58.05 Aligned_cols=86 Identities=8% Similarity=0.062 Sum_probs=56.7
Q ss_pred EEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCCCCHHHHHHHHHHhcCCCCC-----CCCCHHHHHHHHHHHH
Q 047163 178 IIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQNPDHHKIQDKLAFGLGMEFG-----FNENMFQRASRLCERL 252 (658)
Q Consensus 178 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~~~l 252 (658)
++-|.|.+|+||||||.++......+..=..++|++..+.++.. .++.++.+.. .+.+.++....+.+.+
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i~~~l 104 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDMVNQL 104 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHHHHHH
Confidence 68999999999999999988776532112468899988777654 2566665432 1223333312333343
Q ss_pred ---hcCCeEEEEEecCCcc
Q 047163 253 ---KKEKRLLIILDNIWIE 268 (658)
Q Consensus 253 ---~~~k~~LlVlDdv~~~ 268 (658)
+.++.-|||+|-+...
T Consensus 105 ~~i~~~~~~lvVIDSI~aL 123 (333)
T 3io5_A 105 DAIERGEKVVVFIDSLGNL 123 (333)
T ss_dssp HTCCTTCCEEEEEECSTTC
T ss_pred HHhhccCceEEEEeccccc
Confidence 4567889999998643
No 224
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.48 E-value=0.0043 Score=59.94 Aligned_cols=49 Identities=29% Similarity=0.332 Sum_probs=32.8
Q ss_pred ccccccchHHHHHHHHH---Hhcc---------CCccEEEEEcCCCChHHHHHHHHHHHhh
Q 047163 153 DFEAFDSKMEVFQDVME---ALKD---------DKLNIIGVYGMGGVGKTTLVKQVAKQVM 201 (658)
Q Consensus 153 ~~~~~~gr~~~~~~l~~---~l~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (658)
....++|.+....++.+ .+.. .-.+-+.|+|++|+||||||+.++....
T Consensus 14 ~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~ 74 (254)
T 1ixz_A 14 TFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR 74 (254)
T ss_dssp CGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 44567777665554433 3221 0112389999999999999999998764
No 225
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.44 E-value=0.0054 Score=60.16 Aligned_cols=50 Identities=24% Similarity=0.296 Sum_probs=34.2
Q ss_pred cccccccchHHHHHHHHHHhc---c---------CCccEEEEEcCCCChHHHHHHHHHHHhh
Q 047163 152 KDFEAFDSKMEVFQDVMEALK---D---------DKLNIIGVYGMGGVGKTTLVKQVAKQVM 201 (658)
Q Consensus 152 ~~~~~~~gr~~~~~~l~~~l~---~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (658)
.....++|.+..++++.+... . .-.+-+.|+|++|+||||||+.++....
T Consensus 37 ~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~ 98 (278)
T 1iy2_A 37 VTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR 98 (278)
T ss_dssp CCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcC
Confidence 345567887766555543322 1 0112389999999999999999998764
No 226
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=96.43 E-value=0.0051 Score=65.28 Aligned_cols=94 Identities=16% Similarity=0.206 Sum_probs=59.0
Q ss_pred ccccccchHHHHHHHHHHhc-------------cCCccEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCCCC
Q 047163 153 DFEAFDSKMEVFQDVMEALK-------------DDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQNPD 219 (658)
Q Consensus 153 ~~~~~~gr~~~~~~l~~~l~-------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~ 219 (658)
....++|.+..++.|.+++. ....+-|.|+|.+|+|||++|+.+++.... ..+.++++
T Consensus 202 ~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~-----~fv~vn~~---- 272 (489)
T 3hu3_A 202 GYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGA-----FFFLINGP---- 272 (489)
T ss_dssp CGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSS-----EEEEEEHH----
T ss_pred CHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCC-----CEEEEEch----
Confidence 34568999999888877764 133457899999999999999999876521 22333321
Q ss_pred HHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhcCCeEEEEEecCCc
Q 047163 220 HHKIQDKLAFGLGMEFGFNENMFQRASRLCERLKKEKRLLIILDNIWI 267 (658)
Q Consensus 220 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~ 267 (658)
.+...+ ..........++.....++..+|+||+++.
T Consensus 273 ------~l~~~~------~g~~~~~~~~~f~~A~~~~p~iLfLDEId~ 308 (489)
T 3hu3_A 273 ------EIMSKL------AGESESNLRKAFEEAEKNAPAIIFIDELDA 308 (489)
T ss_dssp ------HHHTSC------TTHHHHHHHHHHHHHHHTCSEEEEEESHHH
T ss_pred ------Hhhhhh------cchhHHHHHHHHHHHHhcCCcEEEecchhh
Confidence 111111 111222333444444446788999999853
No 227
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.43 E-value=0.0017 Score=66.20 Aligned_cols=50 Identities=20% Similarity=0.267 Sum_probs=41.8
Q ss_pred ccccccccchHHHHHHHHHHh-ccCCccEEEEEcCCCChHHHHHHHHHHHh
Q 047163 151 VKDFEAFDSKMEVFQDVMEAL-KDDKLNIIGVYGMGGVGKTTLVKQVAKQV 200 (658)
Q Consensus 151 ~~~~~~~~gr~~~~~~l~~~l-~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 200 (658)
|.....++|++..++.+..++ ..+..+.+.|+|++|+||||+|+.++...
T Consensus 10 P~~~~~~vg~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~l 60 (354)
T 1sxj_E 10 PKSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESI 60 (354)
T ss_dssp CCSGGGCCSCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHH
T ss_pred CCCHHHhcCCHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 445667899999999999888 65555559999999999999999999854
No 228
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.41 E-value=0.0021 Score=63.65 Aligned_cols=27 Identities=26% Similarity=0.386 Sum_probs=23.7
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHhh
Q 047163 175 KLNIIGVYGMGGVGKTTLVKQVAKQVM 201 (658)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (658)
..+.+.++|++|+|||+||+.+++...
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l~ 61 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKMG 61 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 345788999999999999999999874
No 229
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.31 E-value=0.015 Score=58.80 Aligned_cols=84 Identities=17% Similarity=0.168 Sum_probs=54.0
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCCCCHHHHHHHHHHhcCCCCC-----CCCCHHHHHHHHHHH
Q 047163 177 NIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQNPDHHKIQDKLAFGLGMEFG-----FNENMFQRASRLCER 251 (658)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~~~ 251 (658)
+++.|.|.+|+||||||.++....... =..++|++....++.. .+..++.... ...+..+....+...
T Consensus 62 ~iv~I~G~pGsGKTtLal~la~~~~~~--g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l 134 (349)
T 2zr9_A 62 RVIEIYGPESSGKTTVALHAVANAQAA--GGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIADML 134 (349)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHT--TCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhC--CCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHHHH
Confidence 589999999999999999998776532 2467899887766543 2344443321 122334444444434
Q ss_pred HhcCCeEEEEEecCCc
Q 047163 252 LKKEKRLLIILDNIWI 267 (658)
Q Consensus 252 l~~~k~~LlVlDdv~~ 267 (658)
....+.-+||+|.+..
T Consensus 135 ~~~~~~~lIVIDsl~~ 150 (349)
T 2zr9_A 135 VRSGALDIIVIDSVAA 150 (349)
T ss_dssp HTTTCCSEEEEECGGG
T ss_pred HhcCCCCEEEEcChHh
Confidence 4434566999999863
No 230
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.30 E-value=0.022 Score=57.60 Aligned_cols=89 Identities=16% Similarity=0.214 Sum_probs=56.7
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHhhhcc----CCCEEEEEEEcCCCCHHHHHHHHHHhcCCCC------------CCCCC
Q 047163 177 NIIGVYGMGGVGKTTLVKQVAKQVMEDK----LFDKVVMAEVTQNPDHHKIQDKLAFGLGMEF------------GFNEN 240 (658)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~------------~~~~~ 240 (658)
.++.|+|.+|+||||||..++....... .-..++|++....++..++.+ ++..++... .....
T Consensus 123 ~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~-~~~~~g~~~~~~l~~l~~~~~~~~e~ 201 (343)
T 1v5w_A 123 AITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRD-IADRFNVDHDAVLDNVLYARAYTSEH 201 (343)
T ss_dssp EEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHH-HHHHTTCCHHHHHHTEEEEECCSTTH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHcCCCHHHHHhceeEeecCCHHH
Confidence 5899999999999999999988743211 124788999888777666544 334443321 00111
Q ss_pred HHHHHHHHHHHHhc--CCeEEEEEecCC
Q 047163 241 MFQRASRLCERLKK--EKRLLIILDNIW 266 (658)
Q Consensus 241 ~~~~~~~l~~~l~~--~k~~LlVlDdv~ 266 (658)
..+....+...+.. .+--+||+|.+.
T Consensus 202 ~~~ll~~l~~~i~~~~~~~~lvVIDsl~ 229 (343)
T 1v5w_A 202 QMELLDYVAAKFHEEAGIFKLLIIDSIM 229 (343)
T ss_dssp HHHHHHHHHHHHHHSCSSEEEEEEETSG
T ss_pred HHHHHHHHHHHHHhcCCCccEEEEechH
Confidence 12333444555554 567799999985
No 231
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=96.28 E-value=0.0036 Score=66.21 Aligned_cols=48 Identities=19% Similarity=0.175 Sum_probs=36.9
Q ss_pred cccccchHHHHHHHHHH---hccCC--ccEEEEEcCCCChHHHHHHHHHHHhh
Q 047163 154 FEAFDSKMEVFQDVMEA---LKDDK--LNIIGVYGMGGVGKTTLVKQVAKQVM 201 (658)
Q Consensus 154 ~~~~~gr~~~~~~l~~~---l~~~~--~~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (658)
...++|.+..++.+..+ +..+. .+-+.++|++|+|||++|+.+++...
T Consensus 36 ~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l~ 88 (456)
T 2c9o_A 36 ASGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELG 88 (456)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred hhhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHhC
Confidence 46788999887765443 33332 35789999999999999999999875
No 232
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.27 E-value=0.0033 Score=63.49 Aligned_cols=52 Identities=27% Similarity=0.380 Sum_probs=40.3
Q ss_pred cccccccccchHHHHHHHHHHhcc-----CCccEEEEEcCCCChHHHHHHHHHHHhh
Q 047163 150 QVKDFEAFDSKMEVFQDVMEALKD-----DKLNIIGVYGMGGVGKTTLVKQVAKQVM 201 (658)
Q Consensus 150 ~~~~~~~~~gr~~~~~~l~~~l~~-----~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (658)
.|.....++|.+..++.+-..+.. .....+.|+|++|+||||||+.+++...
T Consensus 20 r~~~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~ 76 (334)
T 1in4_A 20 RPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQ 76 (334)
T ss_dssp SCSSGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHT
T ss_pred CCccHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 345566788988877777665542 2346799999999999999999999874
No 233
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.20 E-value=0.0052 Score=56.96 Aligned_cols=44 Identities=20% Similarity=0.320 Sum_probs=34.8
Q ss_pred chHHHHHHHHHHhcc---CCccEEEEEcCCCChHHHHHHHHHHHhhh
Q 047163 159 SKMEVFQDVMEALKD---DKLNIIGVYGMGGVGKTTLVKQVAKQVME 202 (658)
Q Consensus 159 gr~~~~~~l~~~l~~---~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 202 (658)
+|++.++.|.+.+.. ....+|+|.|..|+||||+++.+......
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~ 48 (201)
T 1rz3_A 2 ELRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLRE 48 (201)
T ss_dssp CHHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 466677778777652 34569999999999999999999987643
No 234
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=96.17 E-value=0.0072 Score=61.90 Aligned_cols=48 Identities=19% Similarity=0.355 Sum_probs=38.1
Q ss_pred cccccchHHHHHH---HHHHhccCCc--cEEEEEcCCCChHHHHHHHHHHHhh
Q 047163 154 FEAFDSKMEVFQD---VMEALKDDKL--NIIGVYGMGGVGKTTLVKQVAKQVM 201 (658)
Q Consensus 154 ~~~~~gr~~~~~~---l~~~l~~~~~--~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (658)
...++|++..++. +.+.+..+.. +.+.|+|++|+|||++|+.+++...
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~ 95 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALG 95 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred hhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 5678999988665 4444444443 4899999999999999999999875
No 235
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.10 E-value=0.024 Score=57.60 Aligned_cols=84 Identities=19% Similarity=0.185 Sum_probs=55.0
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCCCCHHHHHHHHHHhcCCCCC-----CCCCHHHHHHHHHHH
Q 047163 177 NIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQNPDHHKIQDKLAFGLGMEFG-----FNENMFQRASRLCER 251 (658)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~~~ 251 (658)
.++.|.|.+|+||||||..+....... -..++|++....++.. .+..++.... ...+.++....+...
T Consensus 75 ~li~I~G~pGsGKTtlal~la~~~~~~--g~~vlyi~~E~s~~~~-----~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l 147 (366)
T 1xp8_A 75 RITEIYGPESGGKTTLALAIVAQAQKA--GGTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEIMELL 147 (366)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHT--TCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHHH
T ss_pred cEEEEEcCCCCChHHHHHHHHHHHHHC--CCeEEEEECCCChhHH-----HHHHcCCCHHHceeecCCcHHHHHHHHHHH
Confidence 488999999999999999998776532 2368899988776654 2344443211 123344444445444
Q ss_pred HhcCCeEEEEEecCCc
Q 047163 252 LKKEKRLLIILDNIWI 267 (658)
Q Consensus 252 l~~~k~~LlVlDdv~~ 267 (658)
.+..+--+||+|.+..
T Consensus 148 ~~~~~~~lVVIDsl~~ 163 (366)
T 1xp8_A 148 VRSGAIDVVVVDSVAA 163 (366)
T ss_dssp HTTTCCSEEEEECTTT
T ss_pred HhcCCCCEEEEeChHH
Confidence 4444556999999863
No 236
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.09 E-value=0.022 Score=57.64 Aligned_cols=83 Identities=20% Similarity=0.199 Sum_probs=52.8
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCCCCHHHHHHHHHHhcCCCCC-----CCCCHHHHHHHHHHH
Q 047163 177 NIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQNPDHHKIQDKLAFGLGMEFG-----FNENMFQRASRLCER 251 (658)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~~~ 251 (658)
+++.|.|.+|+||||||.++....... =..++|++....++... +..++.... ......+....+...
T Consensus 64 ~ii~I~G~pGsGKTtLal~la~~~~~~--g~~vlyid~E~s~~~~~-----a~~~g~~~~~l~i~~~~~~e~~~~~~~~l 136 (356)
T 1u94_A 64 RIVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICDAL 136 (356)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEEESSCCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEeCCCCccHHH-----HHHcCCChhheeeeCCCCHHHHHHHHHHH
Confidence 589999999999999999998876542 23688999877766442 344443221 112233333333333
Q ss_pred HhcCCeEEEEEecCC
Q 047163 252 LKKEKRLLIILDNIW 266 (658)
Q Consensus 252 l~~~k~~LlVlDdv~ 266 (658)
.+..+--+||+|.+.
T Consensus 137 ~~~~~~~lVVIDsl~ 151 (356)
T 1u94_A 137 ARSGAVDVIVVDSVA 151 (356)
T ss_dssp HHHTCCSEEEEECGG
T ss_pred HhccCCCEEEEcCHH
Confidence 333455699999985
No 237
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.08 E-value=0.0085 Score=59.60 Aligned_cols=53 Identities=19% Similarity=0.379 Sum_probs=36.0
Q ss_pred hHHHHHHHHHHhccC---CccEEEEEcCCCChHHHHHHHHHHHhh-hccCCCEEEEEEE
Q 047163 160 KMEVFQDVMEALKDD---KLNIIGVYGMGGVGKTTLVKQVAKQVM-EDKLFDKVVMAEV 214 (658)
Q Consensus 160 r~~~~~~l~~~l~~~---~~~vi~I~G~gGiGKTtLa~~v~~~~~-~~~~F~~~~wv~v 214 (658)
+...++.+.+++... ....+.|+|..|+|||+||+.+++... .. .+ .++++++
T Consensus 133 ~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~-g~-~v~~~~~ 189 (308)
T 2qgz_A 133 RMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKK-GV-STTLLHF 189 (308)
T ss_dssp HHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHS-CC-CEEEEEH
T ss_pred HHHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHHHhc-CC-cEEEEEH
Confidence 444555555666531 246889999999999999999999876 42 22 3445554
No 238
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.07 E-value=0.017 Score=59.37 Aligned_cols=114 Identities=11% Similarity=0.189 Sum_probs=61.6
Q ss_pred CCCCCceEEEecCCCCCCccchHHhcCCCCCcEEEccCCCCCCCc-cccccCCCcceEEccCCCCCCc--hhhhccCCCc
Q 047163 497 QCPNLQLFLFFGKGYGPMQISDLFFEGTKELKDLSLTRIPFSSLP-SSLGSLINLGTLCLEDCPRNDI--AILRQLKKLE 573 (658)
Q Consensus 497 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp-~~i~~l~~L~~L~L~~~~~~~l--~~~~~l~~L~ 573 (658)
.+++|+.+.+..+ ...+....|.++..|+.+.+..+ +..++ ..+..+.+|+.+.+..+.+..+ ..|..+.+|+
T Consensus 238 ~~~~L~~i~lp~~---v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~ 313 (379)
T 4h09_A 238 GMKALDEIAIPKN---VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLS 313 (379)
T ss_dssp TCSSCCEEEECTT---CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCC
T ss_pred CCccceEEEcCCC---ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCC
Confidence 4556666665443 33445555566666666666432 33333 2345566666666666555555 4556666666
Q ss_pred EEEccCccCCccc-hhhcCCCCCcEEcccCcccccccChhhhcCC
Q 047163 574 ILRLRHSYTERLP-LEIGQLTRLRLLDLSNCWRLKVIAPNVISKL 617 (658)
Q Consensus 574 ~L~l~~~~~~~lp-~~~~~l~~L~~L~l~~~~~l~~~~~~~i~~l 617 (658)
.+.|..+ +..++ ..+.++.+|+.+.+..+ ++.+....+.+.
T Consensus 314 ~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~--v~~I~~~aF~~c 355 (379)
T 4h09_A 314 SVTLPTA-LKTIQVYAFKNCKALSTISYPKS--ITLIESGAFEGS 355 (379)
T ss_dssp EEECCTT-CCEECTTTTTTCTTCCCCCCCTT--CCEECTTTTTTS
T ss_pred EEEcCcc-ccEEHHHHhhCCCCCCEEEECCc--cCEEchhHhhCC
Confidence 6666443 44443 34556666666666542 455544444433
No 239
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.07 E-value=0.0062 Score=68.12 Aligned_cols=94 Identities=15% Similarity=0.189 Sum_probs=56.6
Q ss_pred cccccchHHHHHHHHHHh----cc---------CCccEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCCCCH
Q 047163 154 FEAFDSKMEVFQDVMEAL----KD---------DKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQNPDH 220 (658)
Q Consensus 154 ~~~~~gr~~~~~~l~~~l----~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~ 220 (658)
..++.|-++.+++|.+.+ .. ...+-|.++|++|+|||+||+.+++.... ..+.++.+
T Consensus 203 ~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~-----~~~~v~~~----- 272 (806)
T 3cf2_A 203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGA-----FFFLINGP----- 272 (806)
T ss_dssp GGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTC-----EEEEEEHH-----
T ss_pred hhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCC-----eEEEEEhH-----
Confidence 344556665555554443 21 23467899999999999999999976643 22344422
Q ss_pred HHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhcCCeEEEEEecCCcc
Q 047163 221 HKIQDKLAFGLGMEFGFNENMFQRASRLCERLKKEKRLLIILDNIWIE 268 (658)
Q Consensus 221 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~ 268 (658)
++... . ....+.....+++..+....++|+||+++..
T Consensus 273 -----~l~sk---~---~gese~~lr~lF~~A~~~~PsIIfIDEiDal 309 (806)
T 3cf2_A 273 -----EIMSK---L---AGESESNLRKAFEEAEKNAPAIIFIDELDAI 309 (806)
T ss_dssp -----HHHSS---C---TTHHHHHHHHHHHHHTTSCSEEEEEESGGGT
T ss_pred -----Hhhcc---c---chHHHHHHHHHHHHHHHcCCeEEEEehhccc
Confidence 11111 0 1222344555666555567899999998753
No 240
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=96.04 E-value=0.016 Score=57.38 Aligned_cols=41 Identities=5% Similarity=-0.010 Sum_probs=31.7
Q ss_pred chHHHHHHHHHHhccCCccEEEEEcCCCChHHHHHHHHHHH
Q 047163 159 SKMEVFQDVMEALKDDKLNIIGVYGMGGVGKTTLVKQVAKQ 199 (658)
Q Consensus 159 gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 199 (658)
|.++.++.|...+..++.+.+.++|+.|+||||+|+.+.+.
T Consensus 1 g~~~~~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~ 41 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSEGISILINGEDLSYPREVSLELPEY 41 (305)
T ss_dssp ---CHHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 34455666777777666778999999999999999999875
No 241
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.03 E-value=0.024 Score=56.81 Aligned_cols=89 Identities=24% Similarity=0.268 Sum_probs=57.4
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHhhhccC----CCEEEEEEEcCCCCHHHHHHHHHHhcCCCCC---------CCCCHH-
Q 047163 177 NIIGVYGMGGVGKTTLVKQVAKQVMEDKL----FDKVVMAEVTQNPDHHKIQDKLAFGLGMEFG---------FNENMF- 242 (658)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~---------~~~~~~- 242 (658)
.++.|+|.+|+||||||.+++........ -..++|++....++..++.+ ++..++.... ...+..
T Consensus 108 ~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~-~~~~~g~~~~~~~~~l~~~~~~~~~~ 186 (324)
T 2z43_A 108 TMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIEN-MAKALGLDIDNVMNNIYYIRAINTDH 186 (324)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHH-HHHHTTCCHHHHHHTEEEEECCSHHH
T ss_pred cEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHhCCCHHHHhccEEEEeCCCHHH
Confidence 48999999999999999999877532110 24788999888777666553 3444443210 011222
Q ss_pred --HHHHHHHHHHhc-CCeEEEEEecCC
Q 047163 243 --QRASRLCERLKK-EKRLLIILDNIW 266 (658)
Q Consensus 243 --~~~~~l~~~l~~-~k~~LlVlDdv~ 266 (658)
+....+...+.. .+.-+||+|.+.
T Consensus 187 ~~~~l~~l~~~~~~~~~~~lvVIDsl~ 213 (324)
T 2z43_A 187 QIAIVDDLQELVSKDPSIKLIVVDSVT 213 (324)
T ss_dssp HHHHHHHHHHHHHHCTTEEEEEETTTT
T ss_pred HHHHHHHHHHHHHhccCCCEEEEeCcH
Confidence 233455555554 567899999986
No 242
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.02 E-value=0.017 Score=57.99 Aligned_cols=89 Identities=17% Similarity=0.182 Sum_probs=56.6
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHhhhcc---------CC-----CEEEEEEEcCCCCHHHHHHHHHHhcCCCC-------
Q 047163 177 NIIGVYGMGGVGKTTLVKQVAKQVMEDK---------LF-----DKVVMAEVTQNPDHHKIQDKLAFGLGMEF------- 235 (658)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~---------~F-----~~~~wv~v~~~~~~~~~~~~i~~~l~~~~------- 235 (658)
.++.|.|.+|+||||||..++....... .. ..++|++....++..++.+. +..++.+.
T Consensus 99 ~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~-~~~~g~~~~~~~~~l 177 (322)
T 2i1q_A 99 SVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQM-AEHAGIDGQTVLDNT 177 (322)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHH-HHHHTCCHHHHHHTE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHH-HHHcCCCHHHHhcCE
Confidence 5899999999999999999987632110 11 46889998887777766543 34444321
Q ss_pred --CCCCCHH---HHHHHHHHHHhc-CCeEEEEEecCC
Q 047163 236 --GFNENMF---QRASRLCERLKK-EKRLLIILDNIW 266 (658)
Q Consensus 236 --~~~~~~~---~~~~~l~~~l~~-~k~~LlVlDdv~ 266 (658)
....+.+ +....+...+.. .+.-+||+|.+.
T Consensus 178 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~ 214 (322)
T 2i1q_A 178 FVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLT 214 (322)
T ss_dssp EEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSS
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcH
Confidence 0011222 233445555654 456799999985
No 243
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.01 E-value=0.026 Score=53.30 Aligned_cols=46 Identities=20% Similarity=0.270 Sum_probs=31.8
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCCCCHHHHHHH
Q 047163 177 NIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQNPDHHKIQDK 226 (658)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~ 226 (658)
.+++|+|.+|+|||||++.+....... =..++|+.... ....+...
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~~~~~--~~~v~~~~~~~--~~~~~~~~ 69 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAKGLRD--GDPCIYVTTEE--SRDSIIRQ 69 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHH--TCCEEEEESSS--CHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHC--CCeEEEEEccc--CHHHHHHH
Confidence 489999999999999999999766532 12456665433 34444443
No 244
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.00 E-value=0.014 Score=60.29 Aligned_cols=85 Identities=19% Similarity=0.317 Sum_probs=35.7
Q ss_pred cchHHhcCCCCCcEEEccCCCCCCCcc-ccccCCCcceEEccCCCCCCc--hhhhccCCCcEEEccCccCCccc-hhhcC
Q 047163 516 ISDLFFEGTKELKDLSLTRIPFSSLPS-SLGSLINLGTLCLEDCPRNDI--AILRQLKKLEILRLRHSYTERLP-LEIGQ 591 (658)
Q Consensus 516 ~~~~~~~~~~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~L~~~~~~~l--~~~~~l~~L~~L~l~~~~~~~lp-~~~~~ 591 (658)
+....|.++..|+.+.+. +.+..++. .+.++.+|+.+.|..+ +..+ ..|..+.+|+.+.+..+ +..++ ..+.+
T Consensus 279 I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~ 355 (394)
T 4gt6_A 279 IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSN 355 (394)
T ss_dssp ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTT
T ss_pred ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhC
Confidence 333344444445444443 22333322 2334445555554432 3333 34444445555544332 33332 23444
Q ss_pred CCCCcEEcccCc
Q 047163 592 LTRLRLLDLSNC 603 (658)
Q Consensus 592 l~~L~~L~l~~~ 603 (658)
+.+|+.+.+.++
T Consensus 356 C~~L~~i~~~~~ 367 (394)
T 4gt6_A 356 CTALNNIEYSGS 367 (394)
T ss_dssp CTTCCEEEESSC
T ss_pred CCCCCEEEECCc
Confidence 455555554443
No 245
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=95.95 E-value=0.014 Score=58.83 Aligned_cols=98 Identities=17% Similarity=0.193 Sum_probs=53.8
Q ss_pred HHHHhc-cCCccEEEEEcCCCChHHHHHHHHHHHhhhc-cCCCEEEEEEEcCCCCHHHHHHHHHHhcCCC---CCCCCCH
Q 047163 167 VMEALK-DDKLNIIGVYGMGGVGKTTLVKQVAKQVMED-KLFDKVVMAEVTQNPDHHKIQDKLAFGLGME---FGFNENM 241 (658)
Q Consensus 167 l~~~l~-~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~---~~~~~~~ 241 (658)
.++.+. -..-..++|+|..|+|||||++.+.+....+ ..+. ++++-+++...... ++.+.+... .......
T Consensus 164 aID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~-~I~~lIGER~~Ev~---~~~~~~~~~vV~atadep~ 239 (422)
T 3ice_A 164 VLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCV-LMVLLIDERPEEVT---EMQRLVKGEVVASTFDEPA 239 (422)
T ss_dssp HHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSE-EEEEEESSCHHHHH---HHHTTCSSEEEEECTTSCH
T ss_pred eeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHhhcCCCee-EEEEEecCChHHHH---HHHHHhCeEEEEeCCCCCH
Confidence 444444 2233489999999999999999998876542 1233 44677776643222 222222110 0001111
Q ss_pred HHHH------HHHHHHH-hcCCeEEEEEecCCcc
Q 047163 242 FQRA------SRLCERL-KKEKRLLIILDNIWIE 268 (658)
Q Consensus 242 ~~~~------~~l~~~l-~~~k~~LlVlDdv~~~ 268 (658)
.... -.+-+++ ..++.+||++||+...
T Consensus 240 ~~r~~~a~~alt~AEyfrd~G~dVLil~DslTR~ 273 (422)
T 3ice_A 240 SRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRL 273 (422)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSCEEEEEEECHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCEEEEEeCchHH
Confidence 1111 1122333 2589999999998643
No 246
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.93 E-value=0.0082 Score=55.93 Aligned_cols=41 Identities=27% Similarity=0.417 Sum_probs=31.9
Q ss_pred HHHHHHHHHhcc--CCccEEEEEcCCCChHHHHHHHHHHHhhh
Q 047163 162 EVFQDVMEALKD--DKLNIIGVYGMGGVGKTTLVKQVAKQVME 202 (658)
Q Consensus 162 ~~~~~l~~~l~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 202 (658)
+.+++|.+.+.. ....+|+|+|.+|+|||||++.+......
T Consensus 6 ~~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~ 48 (208)
T 3c8u_A 6 ALCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAALSA 48 (208)
T ss_dssp HHHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 455566666542 34569999999999999999999988764
No 247
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=95.81 E-value=0.013 Score=62.20 Aligned_cols=50 Identities=28% Similarity=0.321 Sum_probs=35.2
Q ss_pred cccccccchHHHHHHHHHH---hccC---------CccEEEEEcCCCChHHHHHHHHHHHhh
Q 047163 152 KDFEAFDSKMEVFQDVMEA---LKDD---------KLNIIGVYGMGGVGKTTLVKQVAKQVM 201 (658)
Q Consensus 152 ~~~~~~~gr~~~~~~l~~~---l~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (658)
....+++|.+..++++.+. +... -.+-+.|+|++|+||||||+.++....
T Consensus 28 ~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~ 89 (499)
T 2dhr_A 28 VTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR 89 (499)
T ss_dssp CCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred CCHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 3455678887766655443 3221 123489999999999999999998764
No 248
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=95.79 E-value=0.003 Score=54.94 Aligned_cols=45 Identities=11% Similarity=0.078 Sum_probs=32.6
Q ss_pred cccchHHHHHHHHHHhc--cCCccEEEEEcCCCChHHHHHHHHHHHh
Q 047163 156 AFDSKMEVFQDVMEALK--DDKLNIIGVYGMGGVGKTTLVKQVAKQV 200 (658)
Q Consensus 156 ~~~gr~~~~~~l~~~l~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 200 (658)
.++|++..++++.+.+. .....-|.|+|..|+|||++|+.+++..
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~ 51 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNG 51 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTT
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhC
Confidence 46788888888777764 1223457899999999999999997654
No 249
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.78 E-value=0.038 Score=54.41 Aligned_cols=86 Identities=17% Similarity=0.113 Sum_probs=46.4
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcC-CCCHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHh
Q 047163 175 KLNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQ-NPDHHKIQDKLAFGLGMEFGFNENMFQRASRLCERLK 253 (658)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 253 (658)
...+++|+|.+|+||||++..++......... .+..++... .....+-+.......+.+.....+..+. ......+.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~-~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l-~~al~~~~ 181 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHK-KIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEF-QQAKELFS 181 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCC-CEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHH-HHHHHHGG
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCC-EEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHH-HHHHHHhc
Confidence 35699999999999999999999887642211 344454432 1223333344444444433212222222 22222332
Q ss_pred cCCeEEEEEec
Q 047163 254 KEKRLLIILDN 264 (658)
Q Consensus 254 ~~k~~LlVlDd 264 (658)
+.=++|+|-
T Consensus 182 --~~dlvIiDT 190 (296)
T 2px0_A 182 --EYDHVFVDT 190 (296)
T ss_dssp --GSSEEEEEC
T ss_pred --CCCEEEEeC
Confidence 345788883
No 250
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=95.77 E-value=0.035 Score=52.30 Aligned_cols=44 Identities=27% Similarity=0.278 Sum_probs=31.6
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHhhhc---c-CCCEEEEEEEcCCCCH
Q 047163 177 NIIGVYGMGGVGKTTLVKQVAKQVMED---K-LFDKVVMAEVTQNPDH 220 (658)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~~~---~-~F~~~~wv~v~~~~~~ 220 (658)
.+++|+|.+|+|||||++.++...... . .-...+|++-......
T Consensus 26 ~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~ 73 (231)
T 4a74_A 26 AITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRP 73 (231)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCH
Confidence 489999999999999999998754321 1 1346788876554443
No 251
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=95.77 E-value=0.0082 Score=59.72 Aligned_cols=47 Identities=26% Similarity=0.291 Sum_probs=37.5
Q ss_pred ccccchHHHHHHHHHHhcc--------------CCccEEEEEcCCCChHHHHHHHHHHHhh
Q 047163 155 EAFDSKMEVFQDVMEALKD--------------DKLNIIGVYGMGGVGKTTLVKQVAKQVM 201 (658)
Q Consensus 155 ~~~~gr~~~~~~l~~~l~~--------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (658)
..++|++..++.+...+.. .....+.|+|.+|+|||++|+.+++...
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~ 75 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLAN 75 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 4578999988888776642 2345688999999999999999998773
No 252
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=95.74 E-value=0.0053 Score=69.63 Aligned_cols=49 Identities=20% Similarity=0.292 Sum_probs=37.3
Q ss_pred ccccccchHHHHHHHHHHhcc-------------CCccEEEEEcCCCChHHHHHHHHHHHhh
Q 047163 153 DFEAFDSKMEVFQDVMEALKD-------------DKLNIIGVYGMGGVGKTTLVKQVAKQVM 201 (658)
Q Consensus 153 ~~~~~~gr~~~~~~l~~~l~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (658)
....++|.+..++.|.+++.. .....|.|+|.+|+||||||+.++....
T Consensus 202 ~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~ 263 (806)
T 1ypw_A 202 GYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG 263 (806)
T ss_dssp CGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTT
T ss_pred CHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcC
Confidence 455678888877777766531 2345799999999999999999987653
No 253
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.67 E-value=0.066 Score=55.45 Aligned_cols=28 Identities=36% Similarity=0.495 Sum_probs=24.9
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHhhh
Q 047163 175 KLNIIGVYGMGGVGKTTLVKQVAKQVME 202 (658)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 202 (658)
...+|.++|.+|+||||++..++.....
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~ 126 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQK 126 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHH
Confidence 4679999999999999999999987764
No 254
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=95.61 E-value=0.049 Score=55.99 Aligned_cols=89 Identities=15% Similarity=0.154 Sum_probs=53.6
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHhhhc----cCCCEEEEEEEcCCCCHHHHHHHHHHhcCCCCC---------CCCCHH-
Q 047163 177 NIIGVYGMGGVGKTTLVKQVAKQVMED----KLFDKVVMAEVTQNPDHHKIQDKLAFGLGMEFG---------FNENMF- 242 (658)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~~~----~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~---------~~~~~~- 242 (658)
.++.|+|.+|+|||||+..++-..... ..-..++|++....+....+. .++..++.... ......
T Consensus 179 ei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~-~~a~~~gl~~~~vleni~~~~~~~~~~ 257 (400)
T 3lda_A 179 SITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLV-SIAQRFGLDPDDALNNVAYARAYNADH 257 (400)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSHHH
T ss_pred cEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHH-HHHHHcCCChHhHhhcEEEeccCChHH
Confidence 489999999999999999876443221 123468898877766555443 35555543210 011111
Q ss_pred --HHHHHHHHHHhcCCeEEEEEecCC
Q 047163 243 --QRASRLCERLKKEKRLLIILDNIW 266 (658)
Q Consensus 243 --~~~~~l~~~l~~~k~~LlVlDdv~ 266 (658)
+....+...+...+.-+||+|.+.
T Consensus 258 ~~~~l~~~~~~l~~~~~~llVIDs~t 283 (400)
T 3lda_A 258 QLRLLDAAAQMMSESRFSLIVVDSVM 283 (400)
T ss_dssp HHHHHHHHHHHHHHSCEEEEEEETGG
T ss_pred HHHHHHHHHHHHHhcCCceEEecchh
Confidence 223334444444567899999875
No 255
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=95.58 E-value=0.037 Score=55.70 Aligned_cols=41 Identities=10% Similarity=0.321 Sum_probs=32.7
Q ss_pred HHHHHHHHHHhccCCc-cEEEEEcCCCChHHHHHHHHHHHhh
Q 047163 161 MEVFQDVMEALKDDKL-NIIGVYGMGGVGKTTLVKQVAKQVM 201 (658)
Q Consensus 161 ~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (658)
++..+.+...+..++. ..+.++|+.|+|||++|+.+.+...
T Consensus 8 ~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~ 49 (334)
T 1a5t_A 8 RPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLL 49 (334)
T ss_dssp HHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHh
Confidence 4556677777766554 4689999999999999999998764
No 256
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.55 E-value=0.059 Score=53.68 Aligned_cols=49 Identities=18% Similarity=0.263 Sum_probs=36.2
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCCCCHHHHHHHHHH
Q 047163 177 NIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQNPDHHKIQDKLAF 229 (658)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~ 229 (658)
.++.|.|.+|+||||+|..++.....+. ..++|++.. .+..++...+..
T Consensus 69 ~l~li~G~pG~GKTtl~l~ia~~~a~~g--~~vl~~slE--~s~~~l~~R~~~ 117 (315)
T 3bh0_A 69 NFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLE--MGKKENIKRLIV 117 (315)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHTTT--CEEEEEESS--SCHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEECC--CCHHHHHHHHHH
Confidence 4899999999999999999987765432 567787765 445555555543
No 257
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.51 E-value=0.0078 Score=54.37 Aligned_cols=25 Identities=20% Similarity=0.308 Sum_probs=22.5
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHhh
Q 047163 177 NIIGVYGMGGVGKTTLVKQVAKQVM 201 (658)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (658)
.+|.|.|++|+||||+|+.+.....
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5799999999999999999988763
No 258
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.49 E-value=0.0085 Score=53.74 Aligned_cols=25 Identities=20% Similarity=0.234 Sum_probs=22.4
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHhh
Q 047163 177 NIIGVYGMGGVGKTTLVKQVAKQVM 201 (658)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (658)
.+|.|.|+.|+||||+|+.+.....
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4799999999999999999988764
No 259
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.43 E-value=0.0079 Score=54.04 Aligned_cols=20 Identities=35% Similarity=0.606 Sum_probs=18.9
Q ss_pred cEEEEEcCCCChHHHHHHHH
Q 047163 177 NIIGVYGMGGVGKTTLVKQV 196 (658)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v 196 (658)
.+|+|.|++|+||||+|+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 47999999999999999999
No 260
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=95.43 E-value=0.0093 Score=57.92 Aligned_cols=62 Identities=11% Similarity=0.103 Sum_probs=39.4
Q ss_pred cccccchHHHHHHHHHHhc--cCCccEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCC
Q 047163 154 FEAFDSKMEVFQDVMEALK--DDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQN 217 (658)
Q Consensus 154 ~~~~~gr~~~~~~l~~~l~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~ 217 (658)
...++|++..+..+.+.+. ......|.|+|..|+|||++|+.+++..... -...+.++++..
T Consensus 5 f~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~~~--~~~~~~v~~~~~ 68 (265)
T 2bjv_A 5 KDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRW--QGPFISLNCAAL 68 (265)
T ss_dssp -----CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTSTTT--TSCEEEEEGGGS
T ss_pred cccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcCcc--CCCeEEEecCCC
Confidence 3457888888887776654 2223567899999999999999999765421 123445565543
No 261
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.41 E-value=0.019 Score=57.45 Aligned_cols=45 Identities=22% Similarity=0.355 Sum_probs=33.5
Q ss_pred cchHHHHHHHHHHhc----cCCccEEEEEcCCCChHHHHHHHHHHHhhh
Q 047163 158 DSKMEVFQDVMEALK----DDKLNIIGVYGMGGVGKTTLVKQVAKQVME 202 (658)
Q Consensus 158 ~gr~~~~~~l~~~l~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 202 (658)
++-+...+.+++.+. .++...|.|+|++|+||||+++.++.....
T Consensus 2 ~~~~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~~ 50 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIINE 50 (359)
T ss_dssp CCHHHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhCC
Confidence 344555666666553 455667999999999999999999987653
No 262
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=95.39 E-value=0.0092 Score=55.15 Aligned_cols=26 Identities=38% Similarity=0.402 Sum_probs=23.3
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHHhh
Q 047163 176 LNIIGVYGMGGVGKTTLVKQVAKQVM 201 (658)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (658)
..+|.|+|+.|+||||+|+.+.....
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 45899999999999999999998763
No 263
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.30 E-value=0.01 Score=53.85 Aligned_cols=25 Identities=16% Similarity=0.333 Sum_probs=22.4
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHhh
Q 047163 177 NIIGVYGMGGVGKTTLVKQVAKQVM 201 (658)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (658)
++++|+|+.|+|||||++.+.....
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 5899999999999999999988653
No 264
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=95.29 E-value=0.0088 Score=54.76 Aligned_cols=24 Identities=33% Similarity=0.447 Sum_probs=21.5
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHH
Q 047163 176 LNIIGVYGMGGVGKTTLVKQVAKQ 199 (658)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~ 199 (658)
-.+++|+|++|+|||||++.+...
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 358999999999999999999765
No 265
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=95.29 E-value=0.0084 Score=53.86 Aligned_cols=25 Identities=36% Similarity=0.416 Sum_probs=22.4
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHhh
Q 047163 177 NIIGVYGMGGVGKTTLVKQVAKQVM 201 (658)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (658)
.+|+|+|+.|+||||+++.+.....
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 4799999999999999999988754
No 266
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.29 E-value=0.091 Score=54.39 Aligned_cols=90 Identities=24% Similarity=0.196 Sum_probs=49.2
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCC-CCHHHHHHHHHHhcCCCCCC---CCCHHHHHHHHHH
Q 047163 175 KLNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQN-PDHHKIQDKLAFGLGMEFGF---NENMFQRASRLCE 250 (658)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~-~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~l~~ 250 (658)
...+|.++|.+|+||||++..++...... .. .+..++.... +....-+.......+.+... ..+..........
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~-G~-kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~ 173 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKR-GY-KVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVD 173 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHT-TC-CEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc-CC-eEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHH
Confidence 36799999999999999999999887653 22 3344444321 12222333344444443221 2223333333333
Q ss_pred HHhcCCeEEEEEecCC
Q 047163 251 RLKKEKRLLIILDNIW 266 (658)
Q Consensus 251 ~l~~~k~~LlVlDdv~ 266 (658)
.+.....=++|+|-..
T Consensus 174 ~a~~~~~DvvIIDTaG 189 (433)
T 3kl4_A 174 IFVKNKMDIIIVDTAG 189 (433)
T ss_dssp HTTTTTCSEEEEEECC
T ss_pred HHHhcCCCEEEEECCC
Confidence 3332234467788664
No 267
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=95.28 E-value=0.007 Score=58.93 Aligned_cols=49 Identities=27% Similarity=0.304 Sum_probs=34.0
Q ss_pred ccccccchHHHHHHHHHHhc---c---------CCccEEEEEcCCCChHHHHHHHHHHHhh
Q 047163 153 DFEAFDSKMEVFQDVMEALK---D---------DKLNIIGVYGMGGVGKTTLVKQVAKQVM 201 (658)
Q Consensus 153 ~~~~~~gr~~~~~~l~~~l~---~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (658)
....++|.+..++.+.+.+. . ...+-+.|+|++|+|||++|+.+++...
T Consensus 9 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~ 69 (268)
T 2r62_A 9 RFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAH 69 (268)
T ss_dssp CSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHT
T ss_pred CHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhC
Confidence 34557777666555554432 1 1123478999999999999999998764
No 268
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=95.26 E-value=0.012 Score=54.50 Aligned_cols=27 Identities=33% Similarity=0.512 Sum_probs=23.4
Q ss_pred CCccEEEEEcCCCChHHHHHHHHHHHh
Q 047163 174 DKLNIIGVYGMGGVGKTTLVKQVAKQV 200 (658)
Q Consensus 174 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 200 (658)
....+|+|+|+.|+||||+++.+....
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 345699999999999999999998776
No 269
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=95.23 E-value=0.088 Score=54.74 Aligned_cols=90 Identities=21% Similarity=0.233 Sum_probs=49.4
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCC-CCHHHHHHHHHHhcCCCCCC---CCCHHHHHHHHHH
Q 047163 175 KLNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQN-PDHHKIQDKLAFGLGMEFGF---NENMFQRASRLCE 250 (658)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~-~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~l~~ 250 (658)
..++|.++|.+|+||||++..++.....+... .+..+++... +.....+.......+.+... ..+..+.......
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~-kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~ 177 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKK-KVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALK 177 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHTSCC-CEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCC-eEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHH
Confidence 46799999999999999999999888653122 3445554422 23333233333333433211 1233444344444
Q ss_pred HHhcCCeEEEEEecC
Q 047163 251 RLKKEKRLLIILDNI 265 (658)
Q Consensus 251 ~l~~~k~~LlVlDdv 265 (658)
.+..+..=++|+|-.
T Consensus 178 ~~~~~~~D~VIIDTp 192 (433)
T 2xxa_A 178 EAKLKFYDVLLVDTA 192 (433)
T ss_dssp HHHHTTCSEEEEECC
T ss_pred HHHhCCCCEEEEECC
Confidence 444223336777865
No 270
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=95.20 E-value=0.012 Score=53.57 Aligned_cols=26 Identities=38% Similarity=0.448 Sum_probs=22.9
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHHhh
Q 047163 176 LNIIGVYGMGGVGKTTLVKQVAKQVM 201 (658)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (658)
.+.|.|+|+.|+||||+|+.+.....
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~ 30 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTK 30 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45789999999999999999998763
No 271
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=95.18 E-value=0.014 Score=54.00 Aligned_cols=28 Identities=32% Similarity=0.434 Sum_probs=24.9
Q ss_pred CCccEEEEEcCCCChHHHHHHHHHHHhh
Q 047163 174 DKLNIIGVYGMGGVGKTTLVKQVAKQVM 201 (658)
Q Consensus 174 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (658)
....+|+|+|++|+||||+++.+.....
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4557999999999999999999998875
No 272
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=95.17 E-value=0.17 Score=52.48 Aligned_cols=101 Identities=23% Similarity=0.288 Sum_probs=62.5
Q ss_pred HHHHhc-cCCccEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCCC-CHHHHHHHHHHhcCCC------C---
Q 047163 167 VMEALK-DDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQNP-DHHKIQDKLAFGLGME------F--- 235 (658)
Q Consensus 167 l~~~l~-~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~-~~~~~~~~i~~~l~~~------~--- 235 (658)
.++.|. -.+-..++|.|..|+|||+|+.++.+.... .+-+.++++-+++.. ...++.+++...-... .
T Consensus 143 ~ID~l~pigkGQr~~Ifgg~G~GKT~L~~~i~~~~~~-~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~~~~rtvv 221 (482)
T 2ck3_D 143 VVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAK-AHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVAL 221 (482)
T ss_dssp HHHHHSCEETTCEEEEEECTTSSHHHHHHHHHHHTTT-TCSSEEEEEEESCCHHHHHHHHHHHHHHTSSCSSSSCCCEEE
T ss_pred EEecccccccCCeeeeecCCCCChHHHHHHHHHhhHh-hCCCEEEEEECCCcchHHHHHHHHhhhccccccccCCceEEE
Confidence 445554 122347999999999999999999987642 334677888888775 3456666766542221 0
Q ss_pred ---CCCCCHH------HHHHHHHHHHh--cCCeEEEEEecCCcc
Q 047163 236 ---GFNENMF------QRASRLCERLK--KEKRLLIILDNIWIE 268 (658)
Q Consensus 236 ---~~~~~~~------~~~~~l~~~l~--~~k~~LlVlDdv~~~ 268 (658)
....... ...-.+-++++ .++.+|+++||+...
T Consensus 222 V~~t~d~p~~~r~~~~~~a~tiAEyfrd~~G~dVLll~DsitR~ 265 (482)
T 2ck3_D 222 VYGQMNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRF 265 (482)
T ss_dssp EEECTTSCHHHHHHHHHHHHHHHHHHHHTTCSCEEEEEECTHHH
T ss_pred EEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHHHH
Confidence 0011111 11223445554 379999999998643
No 273
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=95.14 E-value=0.014 Score=58.68 Aligned_cols=45 Identities=18% Similarity=0.189 Sum_probs=37.2
Q ss_pred ccccchHHHHHHHHHHhccCCccEEEEEcCCCChHHHHHHHHHHHhh
Q 047163 155 EAFDSKMEVFQDVMEALKDDKLNIIGVYGMGGVGKTTLVKQVAKQVM 201 (658)
Q Consensus 155 ~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (658)
..++|++..++.+...+..+. -+.++|.+|+|||+||+.+.+...
T Consensus 27 ~~i~g~~~~~~~l~~~l~~~~--~vll~G~pGtGKT~la~~la~~~~ 71 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICTGG--HILLEGVPGLAKTLSVNTLAKTMD 71 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHHTC--CEEEESCCCHHHHHHHHHHHHHTT
T ss_pred cceeCcHHHHHHHHHHHHcCC--eEEEECCCCCcHHHHHHHHHHHhC
Confidence 457899999888887776543 688999999999999999988663
No 274
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=95.13 E-value=0.011 Score=59.87 Aligned_cols=50 Identities=22% Similarity=0.270 Sum_probs=36.6
Q ss_pred cccccccchHHHHHHHHHHhccCCccEEEEEcCCCChHHHHHHHHHHHhh
Q 047163 152 KDFEAFDSKMEVFQDVMEALKDDKLNIIGVYGMGGVGKTTLVKQVAKQVM 201 (658)
Q Consensus 152 ~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (658)
.....++|.+..++.+..........-+.|+|.+|+|||++|+.+++...
T Consensus 21 ~~f~~i~G~~~~~~~l~~~~~~~~~~~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 21 FPFSAIVGQEDMKLALLLTAVDPGIGGVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHCGGGCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred CCchhccChHHHHHHHHHHhhCCCCceEEEECCCCccHHHHHHHHHHhCc
Confidence 44566899988766544433332333589999999999999999998764
No 275
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=95.12 E-value=0.042 Score=59.24 Aligned_cols=47 Identities=34% Similarity=0.382 Sum_probs=35.2
Q ss_pred ccccchHHHHHHHHHHhc------cCCccEEEEEcCCCChHHHHHHHHHHHhh
Q 047163 155 EAFDSKMEVFQDVMEALK------DDKLNIIGVYGMGGVGKTTLVKQVAKQVM 201 (658)
Q Consensus 155 ~~~~gr~~~~~~l~~~l~------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (658)
..++|-++..+.+.+.+. .....++.|+|++|+||||||+.++....
T Consensus 81 ~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~ 133 (543)
T 3m6a_A 81 EEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLG 133 (543)
T ss_dssp HHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHHT
T ss_pred HHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 346777777666654432 22345899999999999999999998874
No 276
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=95.12 E-value=0.054 Score=56.34 Aligned_cols=88 Identities=19% Similarity=0.310 Sum_probs=53.5
Q ss_pred EEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCCC-CHHHHHHHHHHhcC--------CCCCCCCCHHHH----
Q 047163 178 IIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQNP-DHHKIQDKLAFGLG--------MEFGFNENMFQR---- 244 (658)
Q Consensus 178 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~-~~~~~~~~i~~~l~--------~~~~~~~~~~~~---- 244 (658)
.++|+|.+|+|||||+..+....... +-+.++++-+++.. ...++.+++...-. .... .......
T Consensus 153 ~~~i~G~sGvGKTtL~~~l~~~~~~~-~~~i~V~~~iGerttev~el~~~l~~~~~l~~tvvv~~~~~-d~pg~r~~~~~ 230 (473)
T 1sky_E 153 KIGLFGGAGVGKTVLIQELIHNIAQE-HGGISVFAGVGERTREGNDLYHEMKDSGVISKTAMVFGQMN-EPPGARMRVAL 230 (473)
T ss_dssp EEEEECCSSSCHHHHHHHHHHHHHHH-TCCCEEEEEESSCHHHHHHHHHHHHHTSGGGGEEEEEECTT-SCHHHHHHHHH
T ss_pred EEEEECCCCCCccHHHHHHHhhhhhc-cCcEEEEeeeccCchHHHHHHHHhhhcCCcceeEEEEEcCC-CCHHHHHHHHH
Confidence 68999999999999999999876643 22455677777665 34455555543210 0011 1111111
Q ss_pred -HHHHHHHHh--cCCeEEEEEecCCc
Q 047163 245 -ASRLCERLK--KEKRLLIILDNIWI 267 (658)
Q Consensus 245 -~~~l~~~l~--~~k~~LlVlDdv~~ 267 (658)
.-.+-+++. .++++|+++||+..
T Consensus 231 ~~ltiAEyFrd~~G~~VLl~~D~itR 256 (473)
T 1sky_E 231 TGLTMAEYFRDEQGQDGLLFIDNIFR 256 (473)
T ss_dssp HHHHHHHHHHHHSCCEEEEEEECTHH
T ss_pred HHHHHHHHHHHhcCCcEEEEeccHHH
Confidence 123444444 38999999999854
No 277
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=95.06 E-value=0.023 Score=53.42 Aligned_cols=40 Identities=18% Similarity=0.270 Sum_probs=30.4
Q ss_pred HHHHHHHHHhccCCccEEEEEcCCCChHHHHHHHHHHHhh
Q 047163 162 EVFQDVMEALKDDKLNIIGVYGMGGVGKTTLVKQVAKQVM 201 (658)
Q Consensus 162 ~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (658)
+..+.+.+.+......+|+|+|.+|+|||||+..+.....
T Consensus 24 ~~a~~~r~~~~~~~~~~i~ivG~~gvGKTtl~~~l~~~~~ 63 (226)
T 2hf9_A 24 RLADKNRKLLNKHGVVAFDFMGAIGSGKTLLIEKLIDNLK 63 (226)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCeEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 3344444444455678999999999999999999998764
No 278
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.06 E-value=0.012 Score=53.08 Aligned_cols=22 Identities=32% Similarity=0.454 Sum_probs=20.6
Q ss_pred cEEEEEcCCCChHHHHHHHHHH
Q 047163 177 NIIGVYGMGGVGKTTLVKQVAK 198 (658)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~ 198 (658)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4799999999999999999987
No 279
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=95.05 E-value=0.014 Score=52.74 Aligned_cols=24 Identities=46% Similarity=0.594 Sum_probs=22.2
Q ss_pred EEEEEcCCCChHHHHHHHHHHHhh
Q 047163 178 IIGVYGMGGVGKTTLVKQVAKQVM 201 (658)
Q Consensus 178 vi~I~G~gGiGKTtLa~~v~~~~~ 201 (658)
.++|+|.+|+|||||++.++....
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999998875
No 280
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=95.04 E-value=0.011 Score=54.64 Aligned_cols=25 Identities=28% Similarity=0.444 Sum_probs=22.9
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHHh
Q 047163 176 LNIIGVYGMGGVGKTTLVKQVAKQV 200 (658)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~ 200 (658)
..+|+|.|+.|+||||+|+.+....
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999998876
No 281
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=95.03 E-value=0.028 Score=55.21 Aligned_cols=29 Identities=28% Similarity=0.222 Sum_probs=25.2
Q ss_pred CCccEEEEEcCCCChHHHHHHHHHHHhhh
Q 047163 174 DKLNIIGVYGMGGVGKTTLVKQVAKQVME 202 (658)
Q Consensus 174 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 202 (658)
....+|+|+|..|+||||||+.+......
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 44679999999999999999999887754
No 282
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.02 E-value=0.013 Score=54.38 Aligned_cols=24 Identities=33% Similarity=0.555 Sum_probs=21.9
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHh
Q 047163 177 NIIGVYGMGGVGKTTLVKQVAKQV 200 (658)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~ 200 (658)
.+++|+|+.|+|||||++.+....
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 489999999999999999998764
No 283
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=95.01 E-value=0.019 Score=64.94 Aligned_cols=60 Identities=20% Similarity=0.330 Sum_probs=43.1
Q ss_pred ccccchHHHHHHHHHHhcc---------CCccEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcC
Q 047163 155 EAFDSKMEVFQDVMEALKD---------DKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQ 216 (658)
Q Consensus 155 ~~~~gr~~~~~~l~~~l~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~ 216 (658)
..++|.+..++.+...+.. .....+.++|++|+|||++|+.+++..... -...+.++++.
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~--~~~~i~i~~s~ 559 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGD--EESMIRIDMSE 559 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSC--TTCEEEEEGGG
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCC--CcceEEEechh
Confidence 4578999988888877751 112369999999999999999999887321 22345556543
No 284
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.00 E-value=0.061 Score=54.37 Aligned_cols=90 Identities=21% Similarity=0.229 Sum_probs=52.0
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHhhhccCC----CEEEEEEEcCCCCHHHHHHHHHHhcCCCCC---------CCCC---
Q 047163 177 NIIGVYGMGGVGKTTLVKQVAKQVMEDKLF----DKVVMAEVTQNPDHHKIQDKLAFGLGMEFG---------FNEN--- 240 (658)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F----~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~---------~~~~--- 240 (658)
.++.|+|.+|+|||||++.++......... ..++|++....+...++ ..++...+.... ....
T Consensus 132 ~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i-~~i~q~~~~~~~~v~~ni~~~~~~~~~~ 210 (349)
T 1pzn_A 132 AITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERI-REIAQNRGLDPDEVLKHIYVARAFNSNH 210 (349)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHH-HHHHHTTTCCHHHHGGGEEEEECCSHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHH-HHHHHHcCCCHHHHhhCEEEEecCChHH
Confidence 599999999999999999999875211011 24588887665443333 233433322110 0011
Q ss_pred HHHHHHHHHHHHhc-----CCeEEEEEecCCc
Q 047163 241 MFQRASRLCERLKK-----EKRLLIILDNIWI 267 (658)
Q Consensus 241 ~~~~~~~l~~~l~~-----~k~~LlVlDdv~~ 267 (658)
..+....+...+.. .+.-+||+|.+..
T Consensus 211 ~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta 242 (349)
T 1pzn_A 211 QMLLVQQAEDKIKELLNTDRPVKLLIVDSLTS 242 (349)
T ss_dssp HHHHHHHHHHHHHHSSSSSSCEEEEEEETSST
T ss_pred HHHHHHHHHHHHHHhccccCCCCEEEEeCchH
Confidence 12223334444442 4678999999863
No 285
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.98 E-value=0.026 Score=47.94 Aligned_cols=51 Identities=16% Similarity=0.044 Sum_probs=28.1
Q ss_pred eEEccCCCCC--CchhhhccCCCcEEEccCccCCccchh-hcCCCCCcEEcccCc
Q 047163 552 TLCLEDCPRN--DIAILRQLKKLEILRLRHSYTERLPLE-IGQLTRLRLLDLSNC 603 (658)
Q Consensus 552 ~L~L~~~~~~--~l~~~~~l~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~~ 603 (658)
.++.+++.++ .++.- -..+|++|+|++|.+..+|.. +..+++|+.|+|++|
T Consensus 12 ~v~Cs~~~L~~~~vP~~-lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTA-FPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp EEECCSSCCCTTTSCSC-CCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSS
T ss_pred EEEeCCCCCccccCCCC-CCcCCCEEECCCCcCCccChhhhhhccccCEEEecCC
Confidence 4555555544 33210 112566666666666666543 456666666666665
No 286
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=94.96 E-value=0.011 Score=53.87 Aligned_cols=25 Identities=32% Similarity=0.433 Sum_probs=22.7
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHhh
Q 047163 177 NIIGVYGMGGVGKTTLVKQVAKQVM 201 (658)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (658)
++++|+|+.|+|||||++.+.....
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 5789999999999999999998765
No 287
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=94.95 E-value=0.015 Score=52.37 Aligned_cols=25 Identities=32% Similarity=0.555 Sum_probs=22.3
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHHh
Q 047163 176 LNIIGVYGMGGVGKTTLVKQVAKQV 200 (658)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~ 200 (658)
-.+|+|+|+.|+||||+++.+....
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 3589999999999999999998765
No 288
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=94.93 E-value=0.12 Score=51.70 Aligned_cols=48 Identities=13% Similarity=0.179 Sum_probs=35.0
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCCCCHHHHHHHHH
Q 047163 177 NIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQNPDHHKIQDKLA 228 (658)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~ 228 (658)
.++.|.|.+|+||||+|..++...... =..++|++. ..+..++...++
T Consensus 47 ~LiiIaG~pG~GKTt~al~ia~~~a~~--g~~Vl~fSl--Ems~~ql~~Rll 94 (338)
T 4a1f_A 47 SLVIIGARPSMGKTSLMMNMVLSALND--DRGVAVFSL--EMSAEQLALRAL 94 (338)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHT--TCEEEEEES--SSCHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHc--CCeEEEEeC--CCCHHHHHHHHH
Confidence 489999999999999999999887642 235667665 344556655554
No 289
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=94.89 E-value=0.016 Score=52.96 Aligned_cols=26 Identities=35% Similarity=0.454 Sum_probs=23.2
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHhhh
Q 047163 177 NIIGVYGMGGVGKTTLVKQVAKQVME 202 (658)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~~ 202 (658)
.+|.|.|+.|+||||+|+.+......
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 27 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDN 27 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 47899999999999999999988753
No 290
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=94.88 E-value=0.018 Score=52.68 Aligned_cols=25 Identities=36% Similarity=0.396 Sum_probs=22.6
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHHh
Q 047163 176 LNIIGVYGMGGVGKTTLVKQVAKQV 200 (658)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~ 200 (658)
..+|.|.|+.|+||||+|+.+....
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc
Confidence 4689999999999999999998766
No 291
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=94.86 E-value=0.015 Score=53.11 Aligned_cols=22 Identities=36% Similarity=0.536 Sum_probs=20.2
Q ss_pred cEEEEEcCCCChHHHHHHHHHH
Q 047163 177 NIIGVYGMGGVGKTTLVKQVAK 198 (658)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~ 198 (658)
.+++|+|++|+||||+++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 4789999999999999999975
No 292
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=94.84 E-value=0.02 Score=50.00 Aligned_cols=39 Identities=23% Similarity=0.307 Sum_probs=29.3
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEc
Q 047163 175 KLNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVT 215 (658)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~ 215 (658)
.-..++|+|..|+|||||++.++...... .+ .+++++..
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~-g~-~~~~~~~~ 73 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEA-GK-NAAYIDAA 73 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTT-TC-CEEEEETT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhc-CC-cEEEEcHH
Confidence 44689999999999999999999987642 12 24555543
No 293
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=94.84 E-value=0.16 Score=49.87 Aligned_cols=88 Identities=23% Similarity=0.189 Sum_probs=49.9
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCCC-CHHHHHHHHHHhcCCCCC---CCCCHHHHHHHHHHH
Q 047163 176 LNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQNP-DHHKIQDKLAFGLGMEFG---FNENMFQRASRLCER 251 (658)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~-~~~~~~~~i~~~l~~~~~---~~~~~~~~~~~l~~~ 251 (658)
..+++++|.+|+||||++..++...... =..+.+++..... .....++......+.+.. ...+..+......+.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~--g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~ 175 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKK--GFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEK 175 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHT--TCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHH
Confidence 5689999999999999999999887643 2245555554322 222223334444444321 122334444445555
Q ss_pred HhcCCeEEEEEecC
Q 047163 252 LKKEKRLLIILDNI 265 (658)
Q Consensus 252 l~~~k~~LlVlDdv 265 (658)
++.++.=++|+|-.
T Consensus 176 ~~~~~~D~ViIDTp 189 (297)
T 1j8m_F 176 FLSEKMEIIIVDTA 189 (297)
T ss_dssp HHHTTCSEEEEECC
T ss_pred HHhCCCCEEEEeCC
Confidence 54223337888865
No 294
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=94.84 E-value=0.017 Score=52.76 Aligned_cols=25 Identities=28% Similarity=0.415 Sum_probs=22.9
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHhh
Q 047163 177 NIIGVYGMGGVGKTTLVKQVAKQVM 201 (658)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (658)
.+|.|.|+.|+||||+|+.+.....
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4799999999999999999998765
No 295
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=94.84 E-value=0.14 Score=48.60 Aligned_cols=46 Identities=15% Similarity=0.221 Sum_probs=32.1
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCCCCHHHHHHH
Q 047163 177 NIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQNPDHHKIQDK 226 (658)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~ 226 (658)
.++.|.|.+|+||||||..++...... =..++|++.... ..++.+.
T Consensus 24 ~~~~i~G~~GsGKTtl~~~~~~~~~~~--~~~v~~~~~e~~--~~~~~~~ 69 (247)
T 2dr3_A 24 NVVLLSGGPGTGKTIFSQQFLWNGLKM--GEPGIYVALEEH--PVQVRQN 69 (247)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHHHT--TCCEEEEESSSC--HHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEEccCC--HHHHHHH
Confidence 489999999999999999887765432 235777775443 3444433
No 296
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=94.81 E-value=0.015 Score=52.71 Aligned_cols=26 Identities=46% Similarity=0.461 Sum_probs=22.8
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHHhh
Q 047163 176 LNIIGVYGMGGVGKTTLVKQVAKQVM 201 (658)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (658)
.++|.|.|++|+||||+|+.+.....
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~~ 36 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKSG 36 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHhC
Confidence 35789999999999999999997763
No 297
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=94.80 E-value=0.012 Score=52.87 Aligned_cols=21 Identities=29% Similarity=0.510 Sum_probs=19.0
Q ss_pred cEEEEEcCCCChHHHHHHHHH
Q 047163 177 NIIGVYGMGGVGKTTLVKQVA 197 (658)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~ 197 (658)
.+++|+|++|+|||||++.++
T Consensus 10 ei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 10 SLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EEEEEECCTTSCHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHc
Confidence 589999999999999999854
No 298
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=94.79 E-value=0.015 Score=52.42 Aligned_cols=25 Identities=36% Similarity=0.480 Sum_probs=22.2
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHhh
Q 047163 177 NIIGVYGMGGVGKTTLVKQVAKQVM 201 (658)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (658)
++|.|.|++|+||||+|+.+.....
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 3689999999999999999998764
No 299
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=94.78 E-value=0.11 Score=51.05 Aligned_cols=89 Identities=20% Similarity=0.166 Sum_probs=48.3
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCCCCHH-HHHHHHHHhcCCCCC---CCCCHHHHHHHHHH
Q 047163 175 KLNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQNPDHH-KIQDKLAFGLGMEFG---FNENMFQRASRLCE 250 (658)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~-~~~~~i~~~l~~~~~---~~~~~~~~~~~l~~ 250 (658)
...+++|+|.+|+||||++..++...... =..+.+++........ .-+..+....+.+.. ...+..+.......
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~--~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~ 174 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGK--GRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEE 174 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHT--TCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHH
Confidence 34689999999999999999999887643 1234455543222111 112233444443321 11233333333334
Q ss_pred HHhcCCeEEEEEecC
Q 047163 251 RLKKEKRLLIILDNI 265 (658)
Q Consensus 251 ~l~~~k~~LlVlDdv 265 (658)
.+...+.=++|+|-.
T Consensus 175 ~~~~~~~D~viiDtp 189 (295)
T 1ls1_A 175 KARLEARDLILVDTA 189 (295)
T ss_dssp HHHHHTCCEEEEECC
T ss_pred HHHhCCCCEEEEeCC
Confidence 442124457888976
No 300
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=94.76 E-value=0.019 Score=55.06 Aligned_cols=27 Identities=30% Similarity=0.363 Sum_probs=23.6
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHhh
Q 047163 175 KLNIIGVYGMGGVGKTTLVKQVAKQVM 201 (658)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (658)
...+|+|+|++|+|||||++.+.....
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg 52 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFG 52 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 356999999999999999999997663
No 301
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=94.75 E-value=0.021 Score=56.64 Aligned_cols=45 Identities=11% Similarity=0.170 Sum_probs=35.9
Q ss_pred cccchHHHHHHHHHHhc--cCCccEEEEEcCCCChHHHHHHHHHHHh
Q 047163 156 AFDSKMEVFQDVMEALK--DDKLNIIGVYGMGGVGKTTLVKQVAKQV 200 (658)
Q Consensus 156 ~~~gr~~~~~~l~~~l~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 200 (658)
.++|+...+..+.+.+. ......|.|+|.+|+|||++|+.+++..
T Consensus 3 ~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 3 HMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred CcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhC
Confidence 47888888888877765 2333467899999999999999999865
No 302
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=94.75 E-value=0.017 Score=55.54 Aligned_cols=25 Identities=28% Similarity=0.337 Sum_probs=22.4
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHhh
Q 047163 177 NIIGVYGMGGVGKTTLVKQVAKQVM 201 (658)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (658)
++|.|.|+.|+||||||+.++....
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCC
Confidence 4789999999999999999988764
No 303
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=94.75 E-value=0.017 Score=53.73 Aligned_cols=27 Identities=37% Similarity=0.486 Sum_probs=23.7
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHhh
Q 047163 175 KLNIIGVYGMGGVGKTTLVKQVAKQVM 201 (658)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (658)
...+|+|+|..|+|||||++.+.....
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 345899999999999999999998754
No 304
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=94.74 E-value=0.093 Score=54.68 Aligned_cols=90 Identities=22% Similarity=0.335 Sum_probs=59.6
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCCC-CHHHHHHHHHHhcCCC--------C-----CCCCCH-
Q 047163 177 NIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQNP-DHHKIQDKLAFGLGME--------F-----GFNENM- 241 (658)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~-~~~~~~~~i~~~l~~~--------~-----~~~~~~- 241 (658)
..++|.|..|+|||+|+.++.+.... .+-+.++++-+++.. ...++.+++...-... . ......
T Consensus 166 qr~gIfgg~GvGKT~L~~~l~~~~a~-~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~l~~~rtvvV~~t~d~p~~ 244 (498)
T 1fx0_B 166 GKIGLFGGAGVGKTVLIMELINNIAK-AHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVALVYGQMNEPPG 244 (498)
T ss_dssp CCEEEEECSSSSHHHHHHHHHHHTTT-TCSSCEEEEEESCCSHHHHHHHHHHHHTTSSCSSTTCCCCEEEEEECTTSCHH
T ss_pred CeEEeecCCCCCchHHHHHHHHHHHh-hCCCEEEEEEcccCcHHHHHHHHhhhcccccccccccccceEEEEeCCCCCHH
Confidence 47899999999999999999987643 335778888888876 4556667766532221 0 001111
Q ss_pred -----HHHHHHHHHHHhc--CCeEEEEEecCCc
Q 047163 242 -----FQRASRLCERLKK--EKRLLIILDNIWI 267 (658)
Q Consensus 242 -----~~~~~~l~~~l~~--~k~~LlVlDdv~~ 267 (658)
....-.+-++++. ++.+|+++||+..
T Consensus 245 ~R~~~~~~altiAEyfrd~~G~dVLl~~DsitR 277 (498)
T 1fx0_B 245 ARMRVGLTALTMAEYFRDVNEQDVLLFIDNIFR 277 (498)
T ss_dssp HHTTHHHHHHHTHHHHTTTSCCEEEEEEECSHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCcEEEEeccHHH
Confidence 1123345566653 7999999999864
No 305
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=94.73 E-value=0.024 Score=53.12 Aligned_cols=42 Identities=21% Similarity=0.349 Sum_probs=31.8
Q ss_pred hHHHHHHHHHHhccCCccEEEEEcCCCChHHHHHHHHHHHhh
Q 047163 160 KMEVFQDVMEALKDDKLNIIGVYGMGGVGKTTLVKQVAKQVM 201 (658)
Q Consensus 160 r~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (658)
.++..+.+.+.+.....++|+|+|.+|+|||||+..+.....
T Consensus 14 ~~~~~~~~~~~~~~~~~~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 14 NKRLAEKNREALRESGTVAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp HHHHHHHHHHHHHHHTCEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHhhcccCceEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 344445555555455678999999999999999999988764
No 306
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=94.72 E-value=0.017 Score=53.52 Aligned_cols=22 Identities=32% Similarity=0.490 Sum_probs=20.5
Q ss_pred cEEEEEcCCCChHHHHHHHHHH
Q 047163 177 NIIGVYGMGGVGKTTLVKQVAK 198 (658)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~ 198 (658)
.+|+|+|+.|+||||+++.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3799999999999999999987
No 307
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=94.72 E-value=0.31 Score=48.59 Aligned_cols=57 Identities=25% Similarity=0.279 Sum_probs=35.9
Q ss_pred CCccEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCC-CCHHHHHHHHHHhcC
Q 047163 174 DKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQN-PDHHKIQDKLAFGLG 232 (658)
Q Consensus 174 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~-~~~~~~~~~i~~~l~ 232 (658)
....+++|+|++|+||||+++.+........ ..+.++...-. ....+-++.....++
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~--g~V~l~g~D~~r~~a~eql~~~~~~~g 184 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHG--FSVVIAASDTFRAGAIEQLEEHAKRIG 184 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHTT--CCEEEEEECCSSTTHHHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcC--CEEEEEeecccccchHHHHHHHHHHcC
Confidence 3457999999999999999999998876531 23344433221 223333444455555
No 308
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=94.72 E-value=0.019 Score=60.90 Aligned_cols=44 Identities=9% Similarity=0.148 Sum_probs=36.5
Q ss_pred cccchHHHHHHHHHHhccCCccEEEEEcCCCChHHHHHHHHHHHhh
Q 047163 156 AFDSKMEVFQDVMEALKDDKLNIIGVYGMGGVGKTTLVKQVAKQVM 201 (658)
Q Consensus 156 ~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (658)
.++|++..++.+...+..+. -|.|+|++|+|||+||+.+++...
T Consensus 23 ~ivGq~~~i~~l~~al~~~~--~VLL~GpPGtGKT~LAraLa~~l~ 66 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAALSGE--SVFLLGPPGIAKSLIARRLKFAFQ 66 (500)
T ss_dssp TCSSCHHHHHHHHHHHHHTC--EEEEECCSSSSHHHHHHHGGGGBS
T ss_pred hhHHHHHHHHHHHHHHhcCC--eeEeecCchHHHHHHHHHHHHHHh
Confidence 36799998888877776544 689999999999999999988663
No 309
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=94.70 E-value=0.02 Score=51.15 Aligned_cols=26 Identities=19% Similarity=0.420 Sum_probs=22.9
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHHhh
Q 047163 176 LNIIGVYGMGGVGKTTLVKQVAKQVM 201 (658)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (658)
..+|+|.|+.|+||||+|+.+.....
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999998764
No 310
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=94.70 E-value=0.019 Score=53.37 Aligned_cols=27 Identities=33% Similarity=0.331 Sum_probs=23.4
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHhh
Q 047163 175 KLNIIGVYGMGGVGKTTLVKQVAKQVM 201 (658)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (658)
...+|+|+|+.|+|||||++.+.....
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 346899999999999999999987653
No 311
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=94.70 E-value=0.019 Score=53.06 Aligned_cols=24 Identities=29% Similarity=0.613 Sum_probs=22.0
Q ss_pred EEEEEcCCCChHHHHHHHHHHHhh
Q 047163 178 IIGVYGMGGVGKTTLVKQVAKQVM 201 (658)
Q Consensus 178 vi~I~G~gGiGKTtLa~~v~~~~~ 201 (658)
.|+|.|+.|+||||+++.+.....
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 689999999999999999998764
No 312
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=94.67 E-value=0.022 Score=51.79 Aligned_cols=28 Identities=29% Similarity=0.428 Sum_probs=24.6
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHhhh
Q 047163 175 KLNIIGVYGMGGVGKTTLVKQVAKQVME 202 (658)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 202 (658)
...+|.|.|++|+||||+++.+......
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~ 39 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQK 39 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 3468999999999999999999988764
No 313
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.67 E-value=0.057 Score=45.80 Aligned_cols=34 Identities=32% Similarity=0.432 Sum_probs=17.3
Q ss_pred CCcEEEccCCCCCCCccc-cccCCCcceEEccCCC
Q 047163 526 ELKDLSLTRIPFSSLPSS-LGSLINLGTLCLEDCP 559 (658)
Q Consensus 526 ~L~~L~l~~~~~~~lp~~-i~~l~~L~~L~L~~~~ 559 (658)
+|+.|+|++|.++.+|.. +..+++|++|+|.+|.
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 455555555555555432 3445555555555554
No 314
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=94.67 E-value=0.024 Score=50.41 Aligned_cols=28 Identities=29% Similarity=0.404 Sum_probs=24.3
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHhhh
Q 047163 175 KLNIIGVYGMGGVGKTTLVKQVAKQVME 202 (658)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 202 (658)
..++++|+|..|+|||||+..+......
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l~~ 30 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAAVR 30 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhhHh
Confidence 3578999999999999999999988754
No 315
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=94.66 E-value=0.019 Score=54.13 Aligned_cols=25 Identities=36% Similarity=0.543 Sum_probs=22.5
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHhh
Q 047163 177 NIIGVYGMGGVGKTTLVKQVAKQVM 201 (658)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (658)
.+|+|+|+.|+||||+|+.+.....
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g 30 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQ 30 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5899999999999999999987653
No 316
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=94.66 E-value=0.031 Score=54.83 Aligned_cols=26 Identities=23% Similarity=0.270 Sum_probs=22.8
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHh
Q 047163 175 KLNIIGVYGMGGVGKTTLVKQVAKQV 200 (658)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 200 (658)
...+|.|.|++|+||||+|+.+....
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999998765
No 317
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=94.65 E-value=0.018 Score=53.37 Aligned_cols=25 Identities=32% Similarity=0.367 Sum_probs=22.3
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHHh
Q 047163 176 LNIIGVYGMGGVGKTTLVKQVAKQV 200 (658)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~ 200 (658)
..+|+|+|+.|+||||+++.+....
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 3589999999999999999998765
No 318
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=94.65 E-value=0.015 Score=53.66 Aligned_cols=25 Identities=28% Similarity=0.432 Sum_probs=22.3
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHhh
Q 047163 177 NIIGVYGMGGVGKTTLVKQVAKQVM 201 (658)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (658)
++++|+|+.|+|||||++.+.....
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCc
Confidence 5789999999999999999987653
No 319
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=94.64 E-value=0.022 Score=51.77 Aligned_cols=25 Identities=32% Similarity=0.384 Sum_probs=22.4
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHH
Q 047163 175 KLNIIGVYGMGGVGKTTLVKQVAKQ 199 (658)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~ 199 (658)
...+|+|+|+.|+||||+++.+...
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3468999999999999999999876
No 320
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=94.63 E-value=0.023 Score=52.14 Aligned_cols=27 Identities=37% Similarity=0.394 Sum_probs=23.5
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHhh
Q 047163 175 KLNIIGVYGMGGVGKTTLVKQVAKQVM 201 (658)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (658)
...+|+|.|+.|+||||+|+.+.....
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l~ 34 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKYG 34 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 346899999999999999999987653
No 321
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=94.61 E-value=0.021 Score=52.74 Aligned_cols=26 Identities=31% Similarity=0.381 Sum_probs=23.2
Q ss_pred CCccEEEEEcCCCChHHHHHHHHHHH
Q 047163 174 DKLNIIGVYGMGGVGKTTLVKQVAKQ 199 (658)
Q Consensus 174 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 199 (658)
.+..+|+|.|+.|+||||+|+.+...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 45678999999999999999999875
No 322
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=94.59 E-value=0.017 Score=53.62 Aligned_cols=25 Identities=40% Similarity=0.579 Sum_probs=22.6
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHHh
Q 047163 176 LNIIGVYGMGGVGKTTLVKQVAKQV 200 (658)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~ 200 (658)
.++|.|+|++|+||||+++.+....
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhC
Confidence 4589999999999999999998876
No 323
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=94.57 E-value=0.017 Score=52.52 Aligned_cols=25 Identities=28% Similarity=0.401 Sum_probs=22.2
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHhh
Q 047163 177 NIIGVYGMGGVGKTTLVKQVAKQVM 201 (658)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (658)
++|.|.|+.|+||||+|+.+.....
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcC
Confidence 4689999999999999999988764
No 324
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=94.55 E-value=0.032 Score=55.46 Aligned_cols=27 Identities=30% Similarity=0.352 Sum_probs=23.7
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHhh
Q 047163 175 KLNIIGVYGMGGVGKTTLVKQVAKQVM 201 (658)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (658)
...+|+|.|..|+||||+++.+.....
T Consensus 91 ~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 91 VPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 455999999999999999999987765
No 325
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=94.53 E-value=0.095 Score=51.72 Aligned_cols=38 Identities=34% Similarity=0.433 Sum_probs=29.1
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEE
Q 047163 175 KLNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEV 214 (658)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v 214 (658)
...+|+|+|.+|+||||++..++...... -..+.+++.
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~~--g~kV~lv~~ 140 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFVDE--GKSVVLAAA 140 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHT--TCCEEEEEE
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHhc--CCEEEEEcc
Confidence 35699999999999999999999887643 123455554
No 326
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=94.52 E-value=0.024 Score=52.34 Aligned_cols=27 Identities=33% Similarity=0.490 Sum_probs=23.4
Q ss_pred CCccEEEEEcCCCChHHHHHHHHHHHh
Q 047163 174 DKLNIIGVYGMGGVGKTTLVKQVAKQV 200 (658)
Q Consensus 174 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 200 (658)
....+|+|.|+.|+||||+|+.+....
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 345689999999999999999998764
No 327
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=94.52 E-value=0.022 Score=50.31 Aligned_cols=25 Identities=28% Similarity=0.380 Sum_probs=22.8
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHHh
Q 047163 176 LNIIGVYGMGGVGKTTLVKQVAKQV 200 (658)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~ 200 (658)
-.+++|+|..|.|||||++.++.-.
T Consensus 33 Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 33 AIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhC
Confidence 3589999999999999999999876
No 328
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=94.52 E-value=0.023 Score=52.01 Aligned_cols=25 Identities=24% Similarity=0.305 Sum_probs=22.3
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHHh
Q 047163 176 LNIIGVYGMGGVGKTTLVKQVAKQV 200 (658)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~ 200 (658)
..+|+|.|+.|+||||+|+.+....
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999998765
No 329
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=94.48 E-value=0.021 Score=53.06 Aligned_cols=25 Identities=24% Similarity=0.474 Sum_probs=22.5
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHhh
Q 047163 177 NIIGVYGMGGVGKTTLVKQVAKQVM 201 (658)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (658)
.+++|+|++|+|||||++.+..-..
T Consensus 21 ei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 21 RVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4899999999999999999987753
No 330
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=94.46 E-value=0.05 Score=51.95 Aligned_cols=27 Identities=22% Similarity=0.110 Sum_probs=23.8
Q ss_pred CCccEEEEEcCCCChHHHHHHHHHHHh
Q 047163 174 DKLNIIGVYGMGGVGKTTLVKQVAKQV 200 (658)
Q Consensus 174 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 200 (658)
....+|+|.|+.|+||||+|+.+.+..
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 356689999999999999999998765
No 331
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=94.44 E-value=0.024 Score=51.50 Aligned_cols=24 Identities=25% Similarity=0.396 Sum_probs=21.9
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHh
Q 047163 177 NIIGVYGMGGVGKTTLVKQVAKQV 200 (658)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~ 200 (658)
.+|+|.|+.|+||||+|+.+....
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999998765
No 332
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=94.41 E-value=0.024 Score=52.08 Aligned_cols=26 Identities=27% Similarity=0.308 Sum_probs=23.1
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHHhh
Q 047163 176 LNIIGVYGMGGVGKTTLVKQVAKQVM 201 (658)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (658)
..+|+|.|+.|+||||+|+.+.....
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35899999999999999999998763
No 333
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=94.40 E-value=0.021 Score=51.19 Aligned_cols=25 Identities=28% Similarity=0.364 Sum_probs=22.3
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHhh
Q 047163 177 NIIGVYGMGGVGKTTLVKQVAKQVM 201 (658)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (658)
++|.|.|+.|+||||+|+.+.....
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999998764
No 334
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=94.39 E-value=0.037 Score=56.45 Aligned_cols=46 Identities=20% Similarity=0.098 Sum_probs=36.1
Q ss_pred cccchHHHHHHHHHHhc-------------c--CCccEEEEEcCCCChHHHHHHHHHHHhh
Q 047163 156 AFDSKMEVFQDVMEALK-------------D--DKLNIIGVYGMGGVGKTTLVKQVAKQVM 201 (658)
Q Consensus 156 ~~~gr~~~~~~l~~~l~-------------~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (658)
.++|.+..++.+...+. . ...+.+.++|++|+|||++|+.+++...
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~ 76 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLD 76 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 36888888888877662 0 1335789999999999999999998773
No 335
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=94.34 E-value=0.028 Score=52.39 Aligned_cols=28 Identities=29% Similarity=0.369 Sum_probs=24.9
Q ss_pred CCccEEEEEcCCCChHHHHHHHHHHHhh
Q 047163 174 DKLNIIGVYGMGGVGKTTLVKQVAKQVM 201 (658)
Q Consensus 174 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (658)
...+||.|.|++|+||||.|+.+.....
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~g 54 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKFH 54 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHHC
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHC
Confidence 4568999999999999999999998764
No 336
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=94.32 E-value=0.026 Score=51.66 Aligned_cols=27 Identities=19% Similarity=0.308 Sum_probs=23.4
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHhh
Q 047163 175 KLNIIGVYGMGGVGKTTLVKQVAKQVM 201 (658)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (658)
..++|+|+|+.|+|||||++.+.....
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 346899999999999999999987653
No 337
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=94.31 E-value=0.022 Score=52.76 Aligned_cols=22 Identities=36% Similarity=0.524 Sum_probs=20.2
Q ss_pred cEEEEEcCCCChHHHHHHHHHH
Q 047163 177 NIIGVYGMGGVGKTTLVKQVAK 198 (658)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~ 198 (658)
.+|+|.|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999975
No 338
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=94.29 E-value=0.085 Score=48.12 Aligned_cols=58 Identities=10% Similarity=0.136 Sum_probs=26.2
Q ss_pred cCCCcceEEccCCCCCCc------hhhhccCCCcEEEccCccCCc-----cchhhcCCCCCcEEcccCc
Q 047163 546 SLINLGTLCLEDCPRNDI------AILRQLKKLEILRLRHSYTER-----LPLEIGQLTRLRLLDLSNC 603 (658)
Q Consensus 546 ~l~~L~~L~L~~~~~~~l------~~~~~l~~L~~L~l~~~~~~~-----lp~~~~~l~~L~~L~l~~~ 603 (658)
.-+.|+.|+|++|.+.+. ..+..=+.|++|+|++|.|+. +-+.+..-+.|+.|+|++|
T Consensus 68 ~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 68 NSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp TCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred hCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCC
Confidence 334455555555554322 223333445555555554432 1223333345666666543
No 339
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=94.28 E-value=0.078 Score=59.95 Aligned_cols=103 Identities=19% Similarity=0.235 Sum_probs=59.5
Q ss_pred ccccchHHHHHHHHHHhcc---------CCccEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCCCCHHHHHH
Q 047163 155 EAFDSKMEVFQDVMEALKD---------DKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQNPDHHKIQD 225 (658)
Q Consensus 155 ~~~~gr~~~~~~l~~~l~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~ 225 (658)
..++|.+..++.+...+.. .....+.++|++|+|||++|+.+++... ...+.++++.-.....
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~-----~~~~~i~~s~~~~~~~--- 529 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG-----IELLRFDMSEYMERHT--- 529 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHT-----CEEEEEEGGGCSSSSC---
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhc-----CCEEEEechhhcchhh---
Confidence 4578999888888776651 1223789999999999999999998772 2344555554322100
Q ss_pred HHHHhcCCCCCCCCCHHHHHHHHHHHHhcCCeEEEEEecCCcc
Q 047163 226 KLAFGLGMEFGFNENMFQRASRLCERLKKEKRLLIILDNIWIE 268 (658)
Q Consensus 226 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~ 268 (658)
+...++.+.. . ...+....+...++.....+|+||++...
T Consensus 530 -~~~l~g~~~g-~-~g~~~~~~l~~~~~~~~~~vl~lDEi~~~ 569 (758)
T 1r6b_X 530 -VSRLIGAPPG-Y-VGFDQGGLLTDAVIKHPHAVLLLDEIEKA 569 (758)
T ss_dssp -CSSSCCCCSC-S-HHHHHTTHHHHHHHHCSSEEEEEETGGGS
T ss_pred -HhhhcCCCCC-C-cCccccchHHHHHHhCCCcEEEEeCcccc
Confidence 0111121111 0 00111122344444345689999999753
No 340
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=94.27 E-value=0.027 Score=54.15 Aligned_cols=28 Identities=21% Similarity=0.351 Sum_probs=23.9
Q ss_pred CCccEEEEEcCCCChHHHHHHHHHHHhh
Q 047163 174 DKLNIIGVYGMGGVGKTTLVKQVAKQVM 201 (658)
Q Consensus 174 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (658)
....+|+|.|+.|+||||+|+.+.....
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4556899999999999999999988654
No 341
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=94.26 E-value=0.024 Score=54.24 Aligned_cols=26 Identities=27% Similarity=0.460 Sum_probs=23.0
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHh
Q 047163 175 KLNIIGVYGMGGVGKTTLVKQVAKQV 200 (658)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 200 (658)
...+|+|.|..|+|||||++.+....
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 34589999999999999999998865
No 342
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=94.25 E-value=0.026 Score=56.01 Aligned_cols=29 Identities=31% Similarity=0.331 Sum_probs=25.0
Q ss_pred CCccEEEEEcCCCChHHHHHHHHHHHhhh
Q 047163 174 DKLNIIGVYGMGGVGKTTLVKQVAKQVME 202 (658)
Q Consensus 174 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 202 (658)
....+|+|+|..|+|||||++.+..-...
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~~ 116 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLAR 116 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhccc
Confidence 34469999999999999999999987754
No 343
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=94.25 E-value=0.032 Score=55.11 Aligned_cols=28 Identities=32% Similarity=0.496 Sum_probs=25.0
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHhhh
Q 047163 175 KLNIIGVYGMGGVGKTTLVKQVAKQVME 202 (658)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 202 (658)
...+++|+|++|+||||+++.++.....
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~ 128 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQN 128 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHh
Confidence 4569999999999999999999988765
No 344
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=94.24 E-value=0.032 Score=51.47 Aligned_cols=26 Identities=23% Similarity=0.232 Sum_probs=23.0
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHHhh
Q 047163 176 LNIIGVYGMGGVGKTTLVKQVAKQVM 201 (658)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (658)
..+|.|.|+.|+||||+|+.+.....
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l~ 45 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKLG 45 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45899999999999999999988763
No 345
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=94.24 E-value=0.027 Score=52.30 Aligned_cols=24 Identities=46% Similarity=0.649 Sum_probs=21.5
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHH
Q 047163 176 LNIIGVYGMGGVGKTTLVKQVAKQ 199 (658)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~ 199 (658)
..+|+|+|+.|+||||+|+.+...
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh
Confidence 458999999999999999999764
No 346
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=94.24 E-value=0.11 Score=63.69 Aligned_cols=85 Identities=20% Similarity=0.172 Sum_probs=58.2
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCCCCHHHHHHHHHHhcCCCCC-----CCCCHHHHHHHHH
Q 047163 175 KLNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQNPDHHKIQDKLAFGLGMEFG-----FNENMFQRASRLC 249 (658)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 249 (658)
..++|.|+|++|+|||+||.++....... =..++|+++...++... +..++.+.. .....++....+.
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea~~~--G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~~~ 1498 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 1498 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTT--TCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHHHHHH
Confidence 34689999999999999999998876542 23577888877776665 344442211 1223345555566
Q ss_pred HHHhcCCeEEEEEecCC
Q 047163 250 ERLKKEKRLLIILDNIW 266 (658)
Q Consensus 250 ~~l~~~k~~LlVlDdv~ 266 (658)
+..+..+--+||+|.+.
T Consensus 1499 ~lvr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1499 ALARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp HHHHHTCCSEEEESCGG
T ss_pred HHHhcCCCCEEEEcChh
Confidence 66665677899999985
No 347
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=94.23 E-value=0.021 Score=53.57 Aligned_cols=24 Identities=33% Similarity=0.541 Sum_probs=21.9
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHh
Q 047163 177 NIIGVYGMGGVGKTTLVKQVAKQV 200 (658)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~ 200 (658)
.+++|+|+.|+|||||++.+....
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 489999999999999999998765
No 348
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=94.23 E-value=0.023 Score=51.57 Aligned_cols=24 Identities=33% Similarity=0.484 Sum_probs=21.3
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHh
Q 047163 177 NIIGVYGMGGVGKTTLVKQVAKQV 200 (658)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~ 200 (658)
|.|.|+|++|+|||||++.+....
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 458899999999999999998765
No 349
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=94.23 E-value=0.076 Score=59.42 Aligned_cols=94 Identities=15% Similarity=0.225 Sum_probs=59.9
Q ss_pred ccccccchHHHHHHHHHHhc----c---------CCccEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCCCC
Q 047163 153 DFEAFDSKMEVFQDVMEALK----D---------DKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQNPD 219 (658)
Q Consensus 153 ~~~~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~ 219 (658)
....+.|-++.++.|.+.+. . ...+-|.++|++|.|||.+|+.+++..... ++.++
T Consensus 475 ~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~-------f~~v~---- 543 (806)
T 3cf2_A 475 TWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQAN-------FISIK---- 543 (806)
T ss_dssp CSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCE-------EEECC----
T ss_pred CHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCc-------eEEec----
Confidence 34556677777777665543 0 123457899999999999999999877532 23332
Q ss_pred HHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhcCCeEEEEEecCCc
Q 047163 220 HHKIQDKLAFGLGMEFGFNENMFQRASRLCERLKKEKRLLIILDNIWI 267 (658)
Q Consensus 220 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~ 267 (658)
.. +++... ....+.....+++.-+....++|+||+++.
T Consensus 544 ~~----~l~s~~------vGese~~vr~lF~~Ar~~~P~IifiDEiDs 581 (806)
T 3cf2_A 544 GP----ELLTMW------FGESEANVREIFDKARQAAPCVLFFDELDS 581 (806)
T ss_dssp HH----HHHTTT------CSSCHHHHHHHHHHHHTTCSEEEECSCGGG
T ss_pred cc----hhhccc------cchHHHHHHHHHHHHHHcCCceeechhhhH
Confidence 11 222111 112245667777777666789999999974
No 350
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=94.22 E-value=0.029 Score=49.94 Aligned_cols=24 Identities=21% Similarity=0.232 Sum_probs=21.8
Q ss_pred EEEEEcCCCChHHHHHHHHHHHhh
Q 047163 178 IIGVYGMGGVGKTTLVKQVAKQVM 201 (658)
Q Consensus 178 vi~I~G~gGiGKTtLa~~v~~~~~ 201 (658)
.|+|.|+.|+||||+|+.+.....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999998764
No 351
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=94.22 E-value=0.027 Score=50.42 Aligned_cols=27 Identities=30% Similarity=0.458 Sum_probs=24.1
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHhhhc
Q 047163 177 NIIGVYGMGGVGKTTLVKQVAKQVMED 203 (658)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~~~ 203 (658)
++++|+|..|+|||||++.+..-....
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~ 29 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRER 29 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 589999999999999999999887653
No 352
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=94.22 E-value=0.028 Score=54.35 Aligned_cols=26 Identities=38% Similarity=0.580 Sum_probs=23.2
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHHhh
Q 047163 176 LNIIGVYGMGGVGKTTLVKQVAKQVM 201 (658)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (658)
..+|.|.|++|+||||+|+.+.....
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~ 29 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILS 29 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 45899999999999999999998754
No 353
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=94.20 E-value=0.44 Score=50.34 Aligned_cols=28 Identities=36% Similarity=0.427 Sum_probs=23.7
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHhhh
Q 047163 175 KLNIIGVYGMGGVGKTTLVKQVAKQVME 202 (658)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 202 (658)
..++|+|+|.+|+||||++..+......
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~ 127 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQR 127 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 4569999999999999999999987764
No 354
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=94.19 E-value=0.027 Score=54.19 Aligned_cols=26 Identities=38% Similarity=0.503 Sum_probs=23.2
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHHhh
Q 047163 176 LNIIGVYGMGGVGKTTLVKQVAKQVM 201 (658)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (658)
-.+|+|+|+.|+||||+++.+.....
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~Lg 52 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESLN 52 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcC
Confidence 45899999999999999999997764
No 355
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=94.18 E-value=0.029 Score=51.18 Aligned_cols=26 Identities=27% Similarity=0.339 Sum_probs=23.0
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHHhh
Q 047163 176 LNIIGVYGMGGVGKTTLVKQVAKQVM 201 (658)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (658)
..+|+|.|+.|+||||+|+.+.....
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~ 31 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999987653
No 356
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=94.18 E-value=0.029 Score=52.12 Aligned_cols=26 Identities=19% Similarity=0.317 Sum_probs=23.5
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHhhh
Q 047163 177 NIIGVYGMGGVGKTTLVKQVAKQVME 202 (658)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~~ 202 (658)
.+|.|.|+.|+||||+|+.+......
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 58999999999999999999988754
No 357
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=94.15 E-value=0.03 Score=51.27 Aligned_cols=27 Identities=30% Similarity=0.457 Sum_probs=23.5
Q ss_pred CCccEEEEEcCCCChHHHHHHHHHHHh
Q 047163 174 DKLNIIGVYGMGGVGKTTLVKQVAKQV 200 (658)
Q Consensus 174 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 200 (658)
....+|+|.|+.|+||||+|+.+....
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHhc
Confidence 345789999999999999999998763
No 358
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=94.14 E-value=0.04 Score=52.98 Aligned_cols=27 Identities=30% Similarity=0.300 Sum_probs=23.5
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHhh
Q 047163 175 KLNIIGVYGMGGVGKTTLVKQVAKQVM 201 (658)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (658)
...+|.|+|++|+||||+|+.+.....
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 346899999999999999999987653
No 359
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=94.14 E-value=0.047 Score=55.97 Aligned_cols=24 Identities=33% Similarity=0.463 Sum_probs=21.9
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHh
Q 047163 177 NIIGVYGMGGVGKTTLVKQVAKQV 200 (658)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~ 200 (658)
..+.++|++|+|||++|+.+++..
T Consensus 73 ~~ill~Gp~GtGKT~la~~la~~l 96 (376)
T 1um8_A 73 SNILLIGPTGSGKTLMAQTLAKHL 96 (376)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999999876
No 360
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=94.12 E-value=0.028 Score=52.13 Aligned_cols=22 Identities=41% Similarity=0.357 Sum_probs=21.1
Q ss_pred EEEEEcCCCChHHHHHHHHHHH
Q 047163 178 IIGVYGMGGVGKTTLVKQVAKQ 199 (658)
Q Consensus 178 vi~I~G~gGiGKTtLa~~v~~~ 199 (658)
+++|+|+.|+|||||++.+..-
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 8999999999999999999887
No 361
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=94.12 E-value=0.28 Score=51.35 Aligned_cols=41 Identities=32% Similarity=0.398 Sum_probs=29.8
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCCCC
Q 047163 176 LNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQNPD 219 (658)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~ 219 (658)
..+++|+|.+|+|||||++.+....... .+.+++.-.+.+.
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAgll~~~---~G~V~l~g~D~~r 333 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLARQFEQQ---GKSVMLAAGDTFR 333 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEECCCTTC
T ss_pred CeEEEEECCCcccHHHHHHHHHHHhhhc---CCeEEEecCcccc
Confidence 4599999999999999999999887642 3344444334433
No 362
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=94.11 E-value=0.035 Score=55.19 Aligned_cols=41 Identities=22% Similarity=0.383 Sum_probs=31.7
Q ss_pred CCccEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcC
Q 047163 174 DKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQ 216 (658)
Q Consensus 174 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~ 216 (658)
++.+||+|.|-|||||||.+..+..-..... ..+.-+++..
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~aLA~~G--kkVllID~Dp 86 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAAFSILG--KRVLQIGCDP 86 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHTT--CCEEEEEESS
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHHHHCC--CeEEEEecCC
Confidence 5678999999999999999999988876532 2456667664
No 363
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=94.11 E-value=0.031 Score=51.09 Aligned_cols=24 Identities=33% Similarity=0.515 Sum_probs=22.1
Q ss_pred EEEEEcCCCChHHHHHHHHHHHhh
Q 047163 178 IIGVYGMGGVGKTTLVKQVAKQVM 201 (658)
Q Consensus 178 vi~I~G~gGiGKTtLa~~v~~~~~ 201 (658)
+|+|.|+.|+||||+|+.+.....
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLK 25 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999998764
No 364
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=94.08 E-value=0.03 Score=51.10 Aligned_cols=105 Identities=11% Similarity=0.019 Sum_probs=65.5
Q ss_pred CCCCceEEEecC-CCCCC---ccchHHhcCCCCCcEEEccCCCCC-----CCccccccCCCcceEEccCCCCCCc-----
Q 047163 498 CPNLQLFLFFGK-GYGPM---QISDLFFEGTKELKDLSLTRIPFS-----SLPSSLGSLINLGTLCLEDCPRNDI----- 563 (658)
Q Consensus 498 ~~~L~~L~l~~~-~~~~~---~~~~~~~~~~~~L~~L~l~~~~~~-----~lp~~i~~l~~L~~L~L~~~~~~~l----- 563 (658)
-+.|+.|++.++ .+... .+. ..+...+.|+.|+|++|.+. .+-..+..-+.|+.|+|++|.|..-
T Consensus 40 n~~L~~L~L~~nn~igd~ga~~la-~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al 118 (197)
T 1pgv_A 40 DTDLKEVNINNMKRVSKERIRSLI-EAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL 118 (197)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHH-HHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred CCCccEEECCCCCCCCHHHHHHHH-HHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence 456777777664 31111 111 22456678888888888876 3445555667888999998887653
Q ss_pred -hhhhccCCCcEEEccCcc---CCc-----cchhhcCCCCCcEEcccCc
Q 047163 564 -AILRQLKKLEILRLRHSY---TER-----LPLEIGQLTRLRLLDLSNC 603 (658)
Q Consensus 564 -~~~~~l~~L~~L~l~~~~---~~~-----lp~~~~~l~~L~~L~l~~~ 603 (658)
..+..-..|++|+|++|. ++. +.+.+..-+.|..|+++.|
T Consensus 119 a~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 119 LRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA 167 (197)
T ss_dssp HHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred HHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence 445555678999987652 221 2334445567777777655
No 365
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=94.07 E-value=0.021 Score=51.72 Aligned_cols=26 Identities=31% Similarity=0.337 Sum_probs=18.8
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHHhh
Q 047163 176 LNIIGVYGMGGVGKTTLVKQVAKQVM 201 (658)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (658)
..+|.|.|+.|+||||+|+.+.....
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHST
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 35899999999999999999987654
No 366
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=94.05 E-value=0.034 Score=60.95 Aligned_cols=50 Identities=16% Similarity=0.165 Sum_probs=41.2
Q ss_pred cccccccccchHHHHHHHHHHhccCCccEEEEEcCCCChHHHHHHHHHHHhh
Q 047163 150 QVKDFEAFDSKMEVFQDVMEALKDDKLNIIGVYGMGGVGKTTLVKQVAKQVM 201 (658)
Q Consensus 150 ~~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (658)
.|.....++|.+..++.+...+..+ ..+.|+|++|+||||||+.++....
T Consensus 36 rp~~l~~i~G~~~~l~~l~~~i~~g--~~vll~Gp~GtGKTtlar~ia~~l~ 85 (604)
T 3k1j_A 36 PEKLIDQVIGQEHAVEVIKTAANQK--RHVLLIGEPGTGKSMLGQAMAELLP 85 (604)
T ss_dssp CSSHHHHCCSCHHHHHHHHHHHHTT--CCEEEECCTTSSHHHHHHHHHHTSC
T ss_pred cccccceEECchhhHhhccccccCC--CEEEEEeCCCCCHHHHHHHHhccCC
Confidence 3455677899999988887777655 4899999999999999999998654
No 367
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=94.04 E-value=0.028 Score=51.26 Aligned_cols=24 Identities=33% Similarity=0.466 Sum_probs=22.3
Q ss_pred EEEEEcCCCChHHHHHHHHHHHhh
Q 047163 178 IIGVYGMGGVGKTTLVKQVAKQVM 201 (658)
Q Consensus 178 vi~I~G~gGiGKTtLa~~v~~~~~ 201 (658)
+++|+|..|+|||||++.++....
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhcc
Confidence 689999999999999999998876
No 368
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=94.02 E-value=0.03 Score=52.51 Aligned_cols=26 Identities=23% Similarity=0.277 Sum_probs=23.1
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHHhh
Q 047163 176 LNIIGVYGMGGVGKTTLVKQVAKQVM 201 (658)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (658)
-.+++|+|++|+|||||.+.+.....
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCC
Confidence 35899999999999999999998764
No 369
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=93.98 E-value=0.036 Score=51.99 Aligned_cols=26 Identities=19% Similarity=0.197 Sum_probs=22.9
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHHhh
Q 047163 176 LNIIGVYGMGGVGKTTLVKQVAKQVM 201 (658)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (658)
...|.|.|+.|+||||+|+.+.....
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 35799999999999999999988763
No 370
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=93.93 E-value=0.18 Score=53.08 Aligned_cols=48 Identities=19% Similarity=0.296 Sum_probs=34.3
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCCCCHHHHHHHH
Q 047163 177 NIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQNPDHHKIQDKL 227 (658)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i 227 (658)
.++.|.|.+|+||||||..++....... =..++|++... +..++...+
T Consensus 204 ~liiI~G~pG~GKTtl~l~ia~~~~~~~-g~~Vl~~s~E~--s~~~l~~r~ 251 (454)
T 2r6a_A 204 DLIIVAARPSVGKTAFALNIAQNVATKT-NENVAIFSLEM--SAQQLVMRM 251 (454)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHHS-SCCEEEEESSS--CHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHhC-CCcEEEEECCC--CHHHHHHHH
Confidence 4899999999999999999998876431 12567776543 345555544
No 371
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=93.93 E-value=0.032 Score=53.09 Aligned_cols=27 Identities=22% Similarity=0.380 Sum_probs=23.3
Q ss_pred CCccEEEEEcCCCChHHHHHHHHHHHhh
Q 047163 174 DKLNIIGVYGMGGVGKTTLVKQVAKQVM 201 (658)
Q Consensus 174 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (658)
.. .+++|+|+.|+|||||.+.+..-..
T Consensus 23 ~~-e~~~liG~nGsGKSTLl~~l~Gl~~ 49 (240)
T 2onk_A 23 GR-DYCVLLGPTGAGKSVFLELIAGIVK 49 (240)
T ss_dssp CS-SEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CC-EEEEEECCCCCCHHHHHHHHhCCCC
Confidence 45 7999999999999999999986543
No 372
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=93.89 E-value=0.039 Score=51.25 Aligned_cols=32 Identities=19% Similarity=0.183 Sum_probs=26.1
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHHhhhccCCCE
Q 047163 176 LNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDK 208 (658)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~ 208 (658)
..+|+|.|+.|+||||+|+.+...... .+++.
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~-~~~~~ 41 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKN-NNVEV 41 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHH-TTCCE
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHH-cCCcE
Confidence 458999999999999999999987654 23554
No 373
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=93.88 E-value=0.04 Score=51.27 Aligned_cols=32 Identities=16% Similarity=0.199 Sum_probs=26.1
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHHhhhccCCCE
Q 047163 176 LNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDK 208 (658)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~ 208 (658)
..+|+|.|+.|+||||+|+.+...... ..++.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~~-~~~~v 40 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALCA-AGHRA 40 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHH-TTCCE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHH-cCCcE
Confidence 468999999999999999999988754 23444
No 374
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=93.87 E-value=0.021 Score=53.21 Aligned_cols=26 Identities=31% Similarity=0.548 Sum_probs=23.0
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHhhh
Q 047163 177 NIIGVYGMGGVGKTTLVKQVAKQVME 202 (658)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~~ 202 (658)
.+|+|.|+.|+||||+|+.+......
T Consensus 1 ~~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 1 MLIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp CEEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 37899999999999999999988753
No 375
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=93.84 E-value=0.062 Score=54.03 Aligned_cols=52 Identities=19% Similarity=0.259 Sum_probs=35.5
Q ss_pred HHHHHhcc-CCccEEEEEcCCCChHHHHHHHHHHHhhhccCCC-EEEEEEEcCCC
Q 047163 166 DVMEALKD-DKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFD-KVVMAEVTQNP 218 (658)
Q Consensus 166 ~l~~~l~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~v~~~~ 218 (658)
.+++.+.. +.-..++|+|.+|+|||+|+..+.+....+ +-+ .++++-+++..
T Consensus 164 raID~l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~~i~~~-~~dv~~V~~lIGER~ 217 (427)
T 3l0o_A 164 RLIDLFAPIGKGQRGMIVAPPKAGKTTILKEIANGIAEN-HPDTIRIILLIDERP 217 (427)
T ss_dssp HHHHHHSCCBTTCEEEEEECTTCCHHHHHHHHHHHHHHH-CTTSEEEEEECSCCH
T ss_pred hhhhhcccccCCceEEEecCCCCChhHHHHHHHHHHhhc-CCCeEEEEEEeccCc
Confidence 45566552 233478999999999999999999886542 223 24567776553
No 376
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=93.83 E-value=0.32 Score=50.19 Aligned_cols=88 Identities=20% Similarity=0.167 Sum_probs=48.7
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCCCCHHH--HHHHHHHhcCCCCC---CCCCHHHHHHHHH
Q 047163 175 KLNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQNPDHHK--IQDKLAFGLGMEFG---FNENMFQRASRLC 249 (658)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~--~~~~i~~~l~~~~~---~~~~~~~~~~~l~ 249 (658)
...+++|+|.+|+||||++..++...... =..+..++. +...... .++......+.+.- ...+..+......
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~--g~~Vllvd~-D~~r~aa~~qL~~~~~~~gv~v~~~~~~~~p~~i~~~~l 173 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGK--GRRPLLVAA-DTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVE 173 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTT--TCCEEEEEC-CSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEeec-cccCchhHHHHHHhcccCCccEEecCCCCCHHHHHHHHH
Confidence 35689999999999999999999887643 123445554 2333222 12333444444321 1123334434444
Q ss_pred HHHhcCCeEEEEEecC
Q 047163 250 ERLKKEKRLLIILDNI 265 (658)
Q Consensus 250 ~~l~~~k~~LlVlDdv 265 (658)
+.++.+..=++|+|-.
T Consensus 174 ~~~~~~~~DvVIIDTa 189 (425)
T 2ffh_A 174 EKARLEARDLILVDTA 189 (425)
T ss_dssp HHHHHTTCSEEEEECC
T ss_pred HHHHHCCCCEEEEcCC
Confidence 5553223337777854
No 377
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=93.77 E-value=0.036 Score=52.08 Aligned_cols=26 Identities=15% Similarity=0.112 Sum_probs=23.0
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHHhh
Q 047163 176 LNIIGVYGMGGVGKTTLVKQVAKQVM 201 (658)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (658)
...|.|.|+.|+||||+|+.+.....
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45789999999999999999998764
No 378
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=93.76 E-value=0.037 Score=52.22 Aligned_cols=25 Identities=24% Similarity=0.348 Sum_probs=22.4
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHHh
Q 047163 176 LNIIGVYGMGGVGKTTLVKQVAKQV 200 (658)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~ 200 (658)
...|.|.|+.|+||||+|+.+....
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3589999999999999999998765
No 379
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=93.75 E-value=0.03 Score=52.42 Aligned_cols=86 Identities=12% Similarity=-0.004 Sum_probs=46.7
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCCCCHHHHHHHHHHhcCCCCCC--CCCHHHHHHHHHHHHh
Q 047163 176 LNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQNPDHHKIQDKLAFGLGMEFGF--NENMFQRASRLCERLK 253 (658)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~~l~~~l~ 253 (658)
-.++.|.|..|+||||++..+..+..... . .++.+..... .. ....+++.++..... .....+....+.+.+.
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~~~g-~-kVli~~~~~d--~r-~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~~ 86 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLEYAD-V-KYLVFKPKID--TR-SIRNIQSRTGTSLPSVEVESAPEILNYIMSNSF 86 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTT-C-CEEEEEECCC--GG-GCSSCCCCCCCSSCCEEESSTHHHHHHHHSTTS
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHHhcC-C-EEEEEEeccC--ch-HHHHHHHhcCCCccccccCCHHHHHHHHHHHhh
Confidence 46889999999999999999988876532 2 2333333222 11 222445555543220 1111222222222222
Q ss_pred cCCeEEEEEecCC
Q 047163 254 KEKRLLIILDNIW 266 (658)
Q Consensus 254 ~~k~~LlVlDdv~ 266 (658)
.++.-+||+|.+.
T Consensus 87 ~~~~dvViIDEaQ 99 (223)
T 2b8t_A 87 NDETKVIGIDEVQ 99 (223)
T ss_dssp CTTCCEEEECSGG
T ss_pred CCCCCEEEEecCc
Confidence 2234499999985
No 380
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=93.73 E-value=0.039 Score=51.47 Aligned_cols=23 Identities=30% Similarity=0.458 Sum_probs=20.9
Q ss_pred EEEEEcCCCChHHHHHHHHHHHh
Q 047163 178 IIGVYGMGGVGKTTLVKQVAKQV 200 (658)
Q Consensus 178 vi~I~G~gGiGKTtLa~~v~~~~ 200 (658)
.|+|.|+.|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998766
No 381
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=93.67 E-value=0.045 Score=54.02 Aligned_cols=27 Identities=30% Similarity=0.463 Sum_probs=24.3
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHHhhh
Q 047163 176 LNIIGVYGMGGVGKTTLVKQVAKQVME 202 (658)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~ 202 (658)
..+++|+|++|+||||+++.++.....
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag~l~~ 126 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAHRLKN 126 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 459999999999999999999988765
No 382
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=93.63 E-value=0.03 Score=52.72 Aligned_cols=24 Identities=25% Similarity=0.432 Sum_probs=21.5
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHh
Q 047163 177 NIIGVYGMGGVGKTTLVKQVAKQV 200 (658)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~ 200 (658)
.+++|+|+.|+|||||.+.++.-.
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 489999999999999999998654
No 383
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=93.61 E-value=0.042 Score=50.35 Aligned_cols=25 Identities=28% Similarity=0.485 Sum_probs=22.5
Q ss_pred EEEEEcCCCChHHHHHHHHHHHhhh
Q 047163 178 IIGVYGMGGVGKTTLVKQVAKQVME 202 (658)
Q Consensus 178 vi~I~G~gGiGKTtLa~~v~~~~~~ 202 (658)
.|+|.|+.|+||||+++.+.+....
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~ 26 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEK 26 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 6899999999999999999988743
No 384
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=93.59 E-value=0.036 Score=53.07 Aligned_cols=25 Identities=36% Similarity=0.408 Sum_probs=22.6
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHhh
Q 047163 177 NIIGVYGMGGVGKTTLVKQVAKQVM 201 (658)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (658)
.+|+|+|+.|+||||+++.+.....
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4799999999999999999998764
No 385
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=93.59 E-value=0.035 Score=52.67 Aligned_cols=33 Identities=18% Similarity=0.306 Sum_probs=25.4
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEE
Q 047163 177 NIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMA 212 (658)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv 212 (658)
.+++|+|+.|+|||||.+.+..-... ..+.+++
T Consensus 32 e~~~iiG~nGsGKSTLl~~l~Gl~~p---~~G~I~~ 64 (235)
T 3tif_A 32 EFVSIMGPSGSGKSTMLNIIGCLDKP---TEGEVYI 64 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSCC---SEEEEEE
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCC---CceEEEE
Confidence 48999999999999999999865432 3355554
No 386
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=93.57 E-value=0.043 Score=49.46 Aligned_cols=27 Identities=22% Similarity=0.303 Sum_probs=23.5
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHHhhh
Q 047163 176 LNIIGVYGMGGVGKTTLVKQVAKQVME 202 (658)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~ 202 (658)
-.+|+|.|+.|+||||+++.+......
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l~~ 31 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYLVC 31 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 357899999999999999999987643
No 387
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=93.55 E-value=0.037 Score=52.93 Aligned_cols=23 Identities=30% Similarity=0.364 Sum_probs=20.8
Q ss_pred cEEEEEcCCCChHHHHHHHHHHH
Q 047163 177 NIIGVYGMGGVGKTTLVKQVAKQ 199 (658)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~ 199 (658)
.+++|+|++|+|||||++.+...
T Consensus 31 ~~~~l~GpnGsGKSTLl~~i~~~ 53 (251)
T 2ehv_A 31 TTVLLTGGTGTGKTTFAAQFIYK 53 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHH
Confidence 48999999999999999999843
No 388
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=93.49 E-value=0.046 Score=50.84 Aligned_cols=28 Identities=25% Similarity=0.373 Sum_probs=24.4
Q ss_pred CCccEEEEEcCCCChHHHHHHHHHHHhh
Q 047163 174 DKLNIIGVYGMGGVGKTTLVKQVAKQVM 201 (658)
Q Consensus 174 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (658)
....+|.|.|+.|+||||+++.+.....
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3446899999999999999999998775
No 389
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=93.48 E-value=0.027 Score=53.37 Aligned_cols=24 Identities=33% Similarity=0.418 Sum_probs=16.0
Q ss_pred cEEEEEcCCCChHHHHHHHHH-HHh
Q 047163 177 NIIGVYGMGGVGKTTLVKQVA-KQV 200 (658)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~-~~~ 200 (658)
.+++|+|+.|+|||||++.+. ...
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC---
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCC
Confidence 589999999999999999998 654
No 390
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=93.46 E-value=0.045 Score=51.09 Aligned_cols=23 Identities=22% Similarity=0.387 Sum_probs=20.7
Q ss_pred EEEEEcCCCChHHHHHHHHHHHh
Q 047163 178 IIGVYGMGGVGKTTLVKQVAKQV 200 (658)
Q Consensus 178 vi~I~G~gGiGKTtLa~~v~~~~ 200 (658)
.|+|.|+.|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999998765
No 391
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=93.43 E-value=0.29 Score=51.27 Aligned_cols=49 Identities=10% Similarity=0.064 Sum_probs=35.7
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCCCCHHHHHHHHH
Q 047163 177 NIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQNPDHHKIQDKLA 228 (658)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~ 228 (658)
.++.|.|.+|+||||+|..++....... =..++|++.. .+..++...++
T Consensus 201 ~l~ii~G~pg~GKT~lal~ia~~~a~~~-g~~vl~~slE--~~~~~l~~R~~ 249 (444)
T 2q6t_A 201 SLNIIAARPAMGKTAFALTIAQNAALKE-GVGVGIYSLE--MPAAQLTLRMM 249 (444)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHTT-CCCEEEEESS--SCHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHhC-CCeEEEEECC--CCHHHHHHHHH
Confidence 4899999999999999999998876421 1356776654 44566666654
No 392
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=93.40 E-value=0.049 Score=50.93 Aligned_cols=23 Identities=30% Similarity=0.398 Sum_probs=20.8
Q ss_pred ccEEEEEcCCCChHHHHHHHHHH
Q 047163 176 LNIIGVYGMGGVGKTTLVKQVAK 198 (658)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~ 198 (658)
..+|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999975
No 393
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=93.36 E-value=0.046 Score=50.43 Aligned_cols=25 Identities=24% Similarity=0.308 Sum_probs=22.3
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHHh
Q 047163 176 LNIIGVYGMGGVGKTTLVKQVAKQV 200 (658)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~ 200 (658)
..+|+|.|+.|+||||+++.+....
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3589999999999999999998765
No 394
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=93.32 E-value=0.048 Score=54.12 Aligned_cols=28 Identities=25% Similarity=0.273 Sum_probs=24.1
Q ss_pred CCccEEEEEcCCCChHHHHHHHHHHHhh
Q 047163 174 DKLNIIGVYGMGGVGKTTLVKQVAKQVM 201 (658)
Q Consensus 174 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (658)
....+|+|+|..|+|||||++.+.....
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3446999999999999999999998764
No 395
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=93.32 E-value=0.036 Score=53.88 Aligned_cols=33 Identities=21% Similarity=0.360 Sum_probs=25.3
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEE
Q 047163 177 NIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMA 212 (658)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv 212 (658)
.+++|+|+.|+|||||++.+..-... ..+.+++
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~Gl~~p---~~G~I~~ 67 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNGILKP---SSGRILF 67 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSSCC---SEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCC---CCeEEEE
Confidence 48999999999999999999865432 3444443
No 396
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=93.30 E-value=0.057 Score=48.40 Aligned_cols=27 Identities=26% Similarity=0.480 Sum_probs=23.9
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHHhhh
Q 047163 176 LNIIGVYGMGGVGKTTLVKQVAKQVME 202 (658)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~ 202 (658)
.++++|+|..|+|||||++.+......
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~ 32 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCA 32 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccc
Confidence 578999999999999999999987643
No 397
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=93.28 E-value=0.038 Score=52.52 Aligned_cols=25 Identities=24% Similarity=0.485 Sum_probs=22.1
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHhh
Q 047163 177 NIIGVYGMGGVGKTTLVKQVAKQVM 201 (658)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (658)
.+++|+|..|+|||||++.+..-..
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl~~ 56 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSSLLSALLAEMD 56 (237)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTCSE
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4899999999999999999986543
No 398
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=93.28 E-value=0.044 Score=52.53 Aligned_cols=23 Identities=35% Similarity=0.508 Sum_probs=21.2
Q ss_pred cEEEEEcCCCChHHHHHHHHHHH
Q 047163 177 NIIGVYGMGGVGKTTLVKQVAKQ 199 (658)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~ 199 (658)
.+++|+|..|+|||||.+.++.-
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999874
No 399
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=93.28 E-value=0.053 Score=51.12 Aligned_cols=26 Identities=23% Similarity=0.434 Sum_probs=23.1
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHHhh
Q 047163 176 LNIIGVYGMGGVGKTTLVKQVAKQVM 201 (658)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (658)
..+|+|.|++|+||||+|+.+.....
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg 34 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALG 34 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45899999999999999999987764
No 400
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=93.28 E-value=0.048 Score=53.31 Aligned_cols=24 Identities=25% Similarity=0.679 Sum_probs=21.5
Q ss_pred CccEEEEEcCCCChHHHHHHHHHH
Q 047163 175 KLNIIGVYGMGGVGKTTLVKQVAK 198 (658)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~ 198 (658)
...+|+|.|+.|+||||+|+.+..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999983
No 401
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=93.27 E-value=0.037 Score=53.46 Aligned_cols=33 Identities=18% Similarity=0.404 Sum_probs=25.5
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEE
Q 047163 177 NIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMA 212 (658)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv 212 (658)
.+++|+|+.|+|||||.+.+..-... ..+.+++
T Consensus 33 e~~~liG~nGsGKSTLlk~l~Gl~~p---~~G~i~~ 65 (262)
T 1b0u_A 33 DVISIIGSSGSGKSTFLRCINFLEKP---SEGAIIV 65 (262)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSCC---SEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCC---CCcEEEE
Confidence 48999999999999999999865432 2355554
No 402
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=93.26 E-value=0.14 Score=48.80 Aligned_cols=48 Identities=19% Similarity=0.246 Sum_probs=31.6
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCCCCHHHHHHHH
Q 047163 177 NIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQNPDHHKIQDKL 227 (658)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i 227 (658)
.++.|.|.+|+|||++|.+++.....+. -..+++++... +..++.+.+
T Consensus 31 ~l~~i~G~pG~GKT~l~l~~~~~~~~~~-~~~v~~~s~E~--~~~~~~~~~ 78 (251)
T 2zts_A 31 TTVLLTGGTGTGKTTFAAQFIYKGAEEY-GEPGVFVTLEE--RARDLRREM 78 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHHH-CCCEEEEESSS--CHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHHhc-CCCceeecccC--CHHHHHHHH
Confidence 4899999999999999999765533221 23455665543 455555444
No 403
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.21 E-value=0.039 Score=52.55 Aligned_cols=33 Identities=27% Similarity=0.394 Sum_probs=25.4
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEE
Q 047163 177 NIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMA 212 (658)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv 212 (658)
.+++|+|+.|+|||||.+.++.-... ..+.+++
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~Gl~~p---~~G~i~~ 65 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAGLVRA---QKGKIIF 65 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSCC---SEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCC---CCceEEE
Confidence 48999999999999999999865432 2355554
No 404
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=93.19 E-value=0.062 Score=55.72 Aligned_cols=47 Identities=26% Similarity=0.291 Sum_probs=35.8
Q ss_pred ccccchHHHHHHHHHHhcc--------------CCccEEEEEcCCCChHHHHHHHHHHHhh
Q 047163 155 EAFDSKMEVFQDVMEALKD--------------DKLNIIGVYGMGGVGKTTLVKQVAKQVM 201 (658)
Q Consensus 155 ~~~~gr~~~~~~l~~~l~~--------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (658)
..++|.+..++.+...+.. ...+-|.++|++|+||||+|+.++....
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~ 75 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLAN 75 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcC
Confidence 4578888877777655521 1245689999999999999999998774
No 405
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=93.18 E-value=0.055 Score=50.00 Aligned_cols=25 Identities=24% Similarity=0.444 Sum_probs=22.4
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHhh
Q 047163 177 NIIGVYGMGGVGKTTLVKQVAKQVM 201 (658)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (658)
++|+|.|+.|+||||+|+.+.....
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 3 GIVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3899999999999999999988664
No 406
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=93.17 E-value=0.039 Score=53.12 Aligned_cols=33 Identities=21% Similarity=0.299 Sum_probs=25.3
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEE
Q 047163 177 NIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMA 212 (658)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv 212 (658)
.+++|+|+.|+|||||.+.++.-... ..+.+++
T Consensus 34 e~~~liG~nGsGKSTLlk~l~Gl~~p---~~G~i~~ 66 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITGFLKA---DEGRVYF 66 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSCC---SEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCC---CCcEEEE
Confidence 48999999999999999999865432 2355544
No 407
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=93.16 E-value=0.046 Score=52.93 Aligned_cols=23 Identities=30% Similarity=0.528 Sum_probs=21.3
Q ss_pred cEEEEEcCCCChHHHHHHHHHHH
Q 047163 177 NIIGVYGMGGVGKTTLVKQVAKQ 199 (658)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~ 199 (658)
.+++|+|..|+|||||++.++.-
T Consensus 47 e~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 47 EVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999875
No 408
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=93.14 E-value=0.034 Score=51.83 Aligned_cols=25 Identities=36% Similarity=0.659 Sum_probs=21.8
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHhh
Q 047163 177 NIIGVYGMGGVGKTTLVKQVAKQVM 201 (658)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (658)
.+++|+|+.|+|||||.+.++.-..
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~Gl~~ 60 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTISTYLK 60 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3899999999999999999986543
No 409
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=93.13 E-value=0.04 Score=53.17 Aligned_cols=33 Identities=18% Similarity=0.240 Sum_probs=25.5
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEE
Q 047163 177 NIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMA 212 (658)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv 212 (658)
.+++|+|+.|+|||||.+.++.-... ..+.+++
T Consensus 51 ei~~liG~NGsGKSTLlk~l~Gl~~p---~~G~I~~ 83 (263)
T 2olj_A 51 EVVVVIGPSGSGKSTFLRCLNLLEDF---DEGEIII 83 (263)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSCC---SEEEEEE
T ss_pred CEEEEEcCCCCcHHHHHHHHHcCCCC---CCcEEEE
Confidence 48999999999999999999865432 2355554
No 410
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=93.11 E-value=0.12 Score=51.09 Aligned_cols=44 Identities=20% Similarity=0.326 Sum_probs=32.5
Q ss_pred cCCccEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCCC
Q 047163 173 DDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQNP 218 (658)
Q Consensus 173 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~ 218 (658)
....++|+|+|-||+||||+|..++....... ..+.-|+.....
T Consensus 38 ~~~~~vI~v~~KGGvGKTT~a~nLA~~La~~G--~~VlliD~D~~~ 81 (307)
T 3end_A 38 ITGAKVFAVYGKGGIGKSTTSSNLSAAFSILG--KRVLQIGCDPKH 81 (307)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHHHHHHHTT--CCEEEEEESSSC
T ss_pred cCCceEEEEECCCCccHHHHHHHHHHHHHHCC--CeEEEEeCCCCC
Confidence 45678999999999999999999998876532 246667766443
No 411
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=93.11 E-value=0.12 Score=52.33 Aligned_cols=39 Identities=26% Similarity=0.493 Sum_probs=30.2
Q ss_pred HHHHHHHhc--cCCccEEEEEcCCCChHHHHHHHHHHHhhh
Q 047163 164 FQDVMEALK--DDKLNIIGVYGMGGVGKTTLVKQVAKQVME 202 (658)
Q Consensus 164 ~~~l~~~l~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 202 (658)
...+++.+. .++..+|+|+|.+|+|||||+..+......
T Consensus 65 ~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~ 105 (355)
T 3p32_A 65 AQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHLIE 105 (355)
T ss_dssp HHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 444555554 456789999999999999999999877643
No 412
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=93.11 E-value=0.062 Score=54.26 Aligned_cols=27 Identities=30% Similarity=0.463 Sum_probs=24.4
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHHhhh
Q 047163 176 LNIIGVYGMGGVGKTTLVKQVAKQVME 202 (658)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~ 202 (658)
..+++|+|.+|+||||+++.++.....
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag~l~~ 183 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAHRLKN 183 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHhhccc
Confidence 459999999999999999999988765
No 413
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=93.10 E-value=0.04 Score=53.29 Aligned_cols=25 Identities=24% Similarity=0.553 Sum_probs=22.1
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHhh
Q 047163 177 NIIGVYGMGGVGKTTLVKQVAKQVM 201 (658)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (658)
.+++|+|+.|+|||||++.+..-..
T Consensus 38 e~~~liG~nGsGKSTLl~~l~Gl~~ 62 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLLTGYLS 62 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHHTSSSC
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCC
Confidence 4899999999999999999986553
No 414
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=93.10 E-value=0.15 Score=50.09 Aligned_cols=48 Identities=29% Similarity=0.338 Sum_probs=32.9
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHhhhccCCC-EEEEEEEcCCCCHHHHHHHHH
Q 047163 177 NIIGVYGMGGVGKTTLVKQVAKQVMEDKLFD-KVVMAEVTQNPDHHKIQDKLA 228 (658)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~v~~~~~~~~~~~~i~ 228 (658)
.+++|.|.+|+|||||++.++...... -. .++|+.... +..++.+.+.
T Consensus 36 ~~~~i~G~~G~GKTTl~~~ia~~~~~~--~G~~v~~~~~e~--~~~~~~~r~~ 84 (296)
T 1cr0_A 36 EVIMVTSGSGMGKSTFVRQQALQWGTA--MGKKVGLAMLEE--SVEETAEDLI 84 (296)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHT--SCCCEEEEESSS--CHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHHH--cCCeEEEEeCcC--CHHHHHHHHH
Confidence 489999999999999999999887653 12 455665432 3344444443
No 415
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=93.07 E-value=0.042 Score=51.87 Aligned_cols=25 Identities=28% Similarity=0.518 Sum_probs=22.0
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHhh
Q 047163 177 NIIGVYGMGGVGKTTLVKQVAKQVM 201 (658)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (658)
.+++|+|+.|+|||||.+.+..-..
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~Gl~~ 59 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMIMGELE 59 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCc
Confidence 4899999999999999999986543
No 416
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=93.03 E-value=0.055 Score=53.92 Aligned_cols=25 Identities=36% Similarity=0.377 Sum_probs=22.5
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHhh
Q 047163 177 NIIGVYGMGGVGKTTLVKQVAKQVM 201 (658)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (658)
.+|+|.|+.|+||||||+.++....
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 5899999999999999999988753
No 417
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=93.01 E-value=0.092 Score=50.60 Aligned_cols=28 Identities=29% Similarity=0.437 Sum_probs=24.0
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHhhh
Q 047163 175 KLNIIGVYGMGGVGKTTLVKQVAKQVME 202 (658)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 202 (658)
.-.+++|+|+.|+|||||++.+......
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~~~~ 51 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDYINQ 51 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHHhCCC
Confidence 3458999999999999999999887654
No 418
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.00 E-value=0.043 Score=52.72 Aligned_cols=33 Identities=27% Similarity=0.481 Sum_probs=25.4
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEE
Q 047163 177 NIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMA 212 (658)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv 212 (658)
.+++|+|+.|+|||||.+.++.-... ..+.+++
T Consensus 42 ei~~l~G~NGsGKSTLlk~l~Gl~~p---~~G~I~~ 74 (256)
T 1vpl_A 42 EIFGLIGPNGAGKTTTLRIISTLIKP---SSGIVTV 74 (256)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSCC---SEEEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCC---CceEEEE
Confidence 48999999999999999999865432 2355554
No 419
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=92.97 E-value=0.064 Score=49.64 Aligned_cols=24 Identities=38% Similarity=0.434 Sum_probs=21.8
Q ss_pred EEEEEcCCCChHHHHHHHHHHHhh
Q 047163 178 IIGVYGMGGVGKTTLVKQVAKQVM 201 (658)
Q Consensus 178 vi~I~G~gGiGKTtLa~~v~~~~~ 201 (658)
+|.|.|++|+||||.|+.+..+..
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g 25 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKG 25 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Confidence 688999999999999999998764
No 420
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=92.96 E-value=0.045 Score=52.36 Aligned_cols=33 Identities=30% Similarity=0.525 Sum_probs=25.6
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEE
Q 047163 177 NIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMA 212 (658)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv 212 (658)
.+++|+|..|+|||||++.+..-... ..+.+++
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~Gl~~p---~~G~I~i 68 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQRFYIP---ENGQVLI 68 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSCC---SEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCC---CCcEEEE
Confidence 48999999999999999999865532 2355554
No 421
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=92.94 E-value=0.062 Score=50.23 Aligned_cols=25 Identities=24% Similarity=0.254 Sum_probs=22.3
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHhh
Q 047163 177 NIIGVYGMGGVGKTTLVKQVAKQVM 201 (658)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (658)
..|.|.|+.|+||||+|+.+.....
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~ 30 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYG 30 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4789999999999999999998763
No 422
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=92.91 E-value=0.063 Score=50.01 Aligned_cols=23 Identities=22% Similarity=0.185 Sum_probs=21.0
Q ss_pred EEEEEcCCCChHHHHHHHHHHHh
Q 047163 178 IIGVYGMGGVGKTTLVKQVAKQV 200 (658)
Q Consensus 178 vi~I~G~gGiGKTtLa~~v~~~~ 200 (658)
.|.|.|+.|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47999999999999999998866
No 423
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=92.88 E-value=0.064 Score=50.41 Aligned_cols=23 Identities=30% Similarity=0.358 Sum_probs=21.1
Q ss_pred EEEEEcCCCChHHHHHHHHHHHh
Q 047163 178 IIGVYGMGGVGKTTLVKQVAKQV 200 (658)
Q Consensus 178 vi~I~G~gGiGKTtLa~~v~~~~ 200 (658)
.|.|.|+.|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998776
No 424
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=92.88 E-value=0.046 Score=52.16 Aligned_cols=25 Identities=28% Similarity=0.404 Sum_probs=22.1
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHhh
Q 047163 177 NIIGVYGMGGVGKTTLVKQVAKQVM 201 (658)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (658)
.+++|+|..|+|||||.+.++.-..
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (243)
T 1mv5_A 29 SIIAFAGPSGGGKSTIFSLLERFYQ 53 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4899999999999999999986543
No 425
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=92.82 E-value=0.048 Score=52.19 Aligned_cols=25 Identities=32% Similarity=0.527 Sum_probs=22.0
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHhh
Q 047163 177 NIIGVYGMGGVGKTTLVKQVAKQVM 201 (658)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (658)
.+++|+|+.|+|||||.+.++.-..
T Consensus 27 e~~~liG~NGsGKSTLlk~l~Gl~~ 51 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAGMTS 51 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCC
Confidence 4899999999999999999986654
No 426
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=92.80 E-value=0.36 Score=50.42 Aligned_cols=48 Identities=19% Similarity=0.245 Sum_probs=34.0
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCCCCHHHHHHHHH
Q 047163 177 NIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQNPDHHKIQDKLA 228 (658)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~ 228 (658)
.++.|.|.+|+||||+|..++.....+ =..++|++.... ..++...++
T Consensus 198 ~liiIaG~pG~GKTtlal~ia~~~a~~--g~~vl~fSlEms--~~ql~~R~~ 245 (444)
T 3bgw_A 198 NFVLIAARPSMGKTAFALKQAKNMSDN--DDVVNLHSLEMG--KKENIKRLI 245 (444)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHHHHHT--TCEEEEECSSSC--TTHHHHHHH
T ss_pred cEEEEEeCCCCChHHHHHHHHHHHHHc--CCEEEEEECCCC--HHHHHHHHH
Confidence 489999999999999999999887653 135677665433 344444443
No 427
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=92.76 E-value=0.049 Score=52.53 Aligned_cols=24 Identities=25% Similarity=0.372 Sum_probs=21.6
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHh
Q 047163 177 NIIGVYGMGGVGKTTLVKQVAKQV 200 (658)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~ 200 (658)
.+++|+|..|+|||||.+.+..-.
T Consensus 47 e~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhccC
Confidence 489999999999999999998654
No 428
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=92.75 E-value=0.049 Score=52.87 Aligned_cols=33 Identities=18% Similarity=0.271 Sum_probs=25.7
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEE
Q 047163 177 NIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMA 212 (658)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv 212 (658)
.+++|+|..|+|||||++.++.-... ..+.+++
T Consensus 46 e~~~i~G~nGsGKSTLlk~l~Gl~~p---~~G~I~~ 78 (271)
T 2ixe_A 46 KVTALVGPNGSGKSTVAALLQNLYQP---TGGKVLL 78 (271)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSCC---SEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCC---CCCEEEE
Confidence 48999999999999999999866532 2355554
No 429
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=92.74 E-value=0.077 Score=50.19 Aligned_cols=26 Identities=27% Similarity=0.206 Sum_probs=23.1
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHHhh
Q 047163 176 LNIIGVYGMGGVGKTTLVKQVAKQVM 201 (658)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (658)
...|.|.|+.|+||||+|+.+.....
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35799999999999999999998764
No 430
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=92.71 E-value=0.05 Score=53.05 Aligned_cols=25 Identities=32% Similarity=0.461 Sum_probs=22.0
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHhh
Q 047163 177 NIIGVYGMGGVGKTTLVKQVAKQVM 201 (658)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (658)
.+++|+|..|+|||||.+.++.-..
T Consensus 48 e~~~liG~NGsGKSTLlk~l~Gl~~ 72 (279)
T 2ihy_A 48 DKWILYGLNGAGKTTLLNILNAYEP 72 (279)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCC
Confidence 4899999999999999999986553
No 431
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=92.71 E-value=0.05 Score=52.67 Aligned_cols=33 Identities=30% Similarity=0.300 Sum_probs=25.3
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEE
Q 047163 177 NIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMA 212 (658)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv 212 (658)
.+++|+|..|+|||||.+.++.-... ..+.+++
T Consensus 34 e~~~liG~nGsGKSTLl~~i~Gl~~p---~~G~I~~ 66 (266)
T 2yz2_A 34 ECLLVAGNTGSGKSTLLQIVAGLIEP---TSGDVLY 66 (266)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSCC---SEEEEEE
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCCC---CCcEEEE
Confidence 48999999999999999999865432 3355554
No 432
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=92.67 E-value=0.051 Score=52.14 Aligned_cols=25 Identities=32% Similarity=0.506 Sum_probs=21.9
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHhh
Q 047163 177 NIIGVYGMGGVGKTTLVKQVAKQVM 201 (658)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (658)
.+++|+|.+|+|||||.+.++.-..
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~Gl~~ 56 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLLGIHR 56 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4899999999999999999986543
No 433
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=92.64 E-value=0.1 Score=47.65 Aligned_cols=38 Identities=18% Similarity=0.176 Sum_probs=27.3
Q ss_pred HHHHHHHhcc-CCccEEEEEcCCCChHHHHHHHHHHHhh
Q 047163 164 FQDVMEALKD-DKLNIIGVYGMGGVGKTTLVKQVAKQVM 201 (658)
Q Consensus 164 ~~~l~~~l~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (658)
+..+..++.. ..-+.+.|+|++|+||||+|..+++...
T Consensus 45 ~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~~l~ 83 (212)
T 1tue_A 45 LGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFIQ 83 (212)
T ss_dssp HHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3444444432 2234799999999999999999988764
No 434
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=92.57 E-value=0.088 Score=52.40 Aligned_cols=38 Identities=37% Similarity=0.438 Sum_probs=28.8
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEE
Q 047163 175 KLNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEV 214 (658)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v 214 (658)
...+|+|+|.+|+||||++..++...... =..+.+++.
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~~--g~kVllid~ 141 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYAEL--GYKVLIAAA 141 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHHHT--TCCEEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEeC
Confidence 45699999999999999999999887643 123445544
No 435
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=92.52 E-value=0.071 Score=52.77 Aligned_cols=24 Identities=29% Similarity=0.328 Sum_probs=22.0
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHh
Q 047163 177 NIIGVYGMGGVGKTTLVKQVAKQV 200 (658)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~ 200 (658)
++|.|+|+.|+||||||+.++...
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 589999999999999999998765
No 436
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=92.52 E-value=0.071 Score=48.62 Aligned_cols=25 Identities=28% Similarity=0.469 Sum_probs=21.9
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHHh
Q 047163 176 LNIIGVYGMGGVGKTTLVKQVAKQV 200 (658)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~ 200 (658)
.-.|+|+|.+|+|||||.+.+....
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 3478999999999999999998754
No 437
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=92.51 E-value=0.069 Score=52.57 Aligned_cols=25 Identities=20% Similarity=0.305 Sum_probs=22.7
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHHh
Q 047163 176 LNIIGVYGMGGVGKTTLVKQVAKQV 200 (658)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~ 200 (658)
-.+++|+|+.|+|||||++.+..-.
T Consensus 126 Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 126 KNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhhhc
Confidence 3589999999999999999998776
No 438
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=92.34 E-value=0.3 Score=58.96 Aligned_cols=83 Identities=20% Similarity=0.199 Sum_probs=63.7
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCCCCHHHHHHHHHHhcCCCCC-----CCCCHHHHHHHHHHH
Q 047163 177 NIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQNPDHHKIQDKLAFGLGMEFG-----FNENMFQRASRLCER 251 (658)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~~~ 251 (658)
++|-|+|+.|+||||||.++....... =..++|+++.+..+..- ++.++.+.+ .+..-++....+...
T Consensus 1432 ~~iei~g~~~sGkttl~~~~~a~~~~~--g~~~~~i~~e~~~~~~~-----~~~~Gv~~~~l~~~~p~~~e~~l~~~~~~ 1504 (1706)
T 3cmw_A 1432 RIVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICDAL 1504 (1706)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhc--CCeEEEEecCCCCCHHH-----HHHcCCCHHHeEEeCCCcHHHHHHHHHHH
Confidence 699999999999999999999776532 35688999888877764 666665543 244556677777777
Q ss_pred HhcCCeEEEEEecCC
Q 047163 252 LKKEKRLLIILDNIW 266 (658)
Q Consensus 252 l~~~k~~LlVlDdv~ 266 (658)
++++.--+||+|-|.
T Consensus 1505 ~~s~~~~~vvvDsv~ 1519 (1706)
T 3cmw_A 1505 ARSGAVDVIVVDSVA 1519 (1706)
T ss_dssp HHHTCCSEEEESCST
T ss_pred HHcCCCCEEEEccHH
Confidence 887777799999885
No 439
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=92.33 E-value=0.3 Score=58.95 Aligned_cols=86 Identities=20% Similarity=0.162 Sum_probs=57.5
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCCCCHHHHHHHHHHhcCCCCC-----CCCCHHHHHHHHHH
Q 047163 176 LNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQNPDHHKIQDKLAFGLGMEFG-----FNENMFQRASRLCE 250 (658)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~~ 250 (658)
-+++.|.|.+|+||||||.++....... =..++|++.....+... +..++.+.. ...+.++....+..
T Consensus 383 G~lilI~G~pGsGKTtLaLq~a~~~~~~--G~~vlyis~E~s~~~~~-----a~~lGvd~~~L~i~~~~~~e~~l~~l~~ 455 (1706)
T 3cmw_A 383 GRIVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICDA 455 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHh--CCCeEEEEccCchHHHH-----HHHcCCCHHHeEEcCCCCHHHHHHHHHH
Confidence 3589999999999999999998876543 24688998887776542 445554321 12334444444544
Q ss_pred HHhcCCeEEEEEecCCcc
Q 047163 251 RLKKEKRLLIILDNIWIE 268 (658)
Q Consensus 251 ~l~~~k~~LlVlDdv~~~ 268 (658)
..+..+.-+||+|-+...
T Consensus 456 lv~~~~~~lVVIDSL~al 473 (1706)
T 3cmw_A 456 LARSGAVDVIVVDSVAAL 473 (1706)
T ss_dssp HHHHTCCSEEEESCSTTC
T ss_pred HHHhcCCCEEEECCHHHh
Confidence 444455669999998643
No 440
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=92.21 E-value=0.051 Score=53.38 Aligned_cols=27 Identities=30% Similarity=0.394 Sum_probs=20.6
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHhh
Q 047163 175 KLNIIGVYGMGGVGKTTLVKQVAKQVM 201 (658)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (658)
+..+|+|.|..|+||||+|+.+.....
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 456899999999999999999988654
No 441
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=92.14 E-value=0.35 Score=59.23 Aligned_cols=85 Identities=20% Similarity=0.175 Sum_probs=57.0
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCCCCHHHHHHHHHHhcCCCCC-----CCCCHHHHHHHHHH
Q 047163 176 LNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQNPDHHKIQDKLAFGLGMEFG-----FNENMFQRASRLCE 250 (658)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~~ 250 (658)
-+++.|.|.+|+||||||.+++...... =..++|++.....+... +..++.+.. .+.+..+....+..
T Consensus 383 G~lilI~G~pGsGKTtLaLqia~~~a~~--G~~vlyis~E~s~~~~~-----a~~lGvd~~~L~I~~~~~~e~il~~~~~ 455 (2050)
T 3cmu_A 383 GRIVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICDA 455 (2050)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHHHTT--TCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHhc--CCeEEEEEcCCCHHHHH-----HHHcCCCHHHeEEeCCCCHHHHHHHHHH
Confidence 3599999999999999999999887642 23678888877776542 445554322 13344444445544
Q ss_pred HHhcCCeEEEEEecCCc
Q 047163 251 RLKKEKRLLIILDNIWI 267 (658)
Q Consensus 251 ~l~~~k~~LlVlDdv~~ 267 (658)
..+..+.-+||+|-+..
T Consensus 456 lv~~~~~~lIVIDSL~a 472 (2050)
T 3cmu_A 456 LARSGAVDVIVVDSVAA 472 (2050)
T ss_dssp HHHHTCCSEEEESCGGG
T ss_pred HHHhcCCcEEEECCHHH
Confidence 44445566999998754
No 442
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=92.10 E-value=0.066 Score=51.62 Aligned_cols=24 Identities=29% Similarity=0.516 Sum_probs=21.5
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHh
Q 047163 177 NIIGVYGMGGVGKTTLVKQVAKQV 200 (658)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~ 200 (658)
.+++|+|..|+|||||.+.++.-.
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 489999999999999999998654
No 443
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=92.10 E-value=0.1 Score=49.40 Aligned_cols=27 Identities=33% Similarity=0.363 Sum_probs=23.5
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHhh
Q 047163 175 KLNIIGVYGMGGVGKTTLVKQVAKQVM 201 (658)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (658)
...+|+|.|+.|+||||+++.+.....
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~lg 41 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDFG 41 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 456899999999999999999987653
No 444
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=92.07 E-value=0.15 Score=48.10 Aligned_cols=28 Identities=29% Similarity=0.437 Sum_probs=24.7
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHhhh
Q 047163 175 KLNIIGVYGMGGVGKTTLVKQVAKQVME 202 (658)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 202 (658)
.-.+|.|.|+.|+||||+++.+......
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 3468999999999999999999998864
No 445
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=92.06 E-value=0.084 Score=51.19 Aligned_cols=25 Identities=40% Similarity=0.529 Sum_probs=21.9
Q ss_pred EEEEEcCCCChHHHHHHHHHHHhhh
Q 047163 178 IIGVYGMGGVGKTTLVKQVAKQVME 202 (658)
Q Consensus 178 vi~I~G~gGiGKTtLa~~v~~~~~~ 202 (658)
.++|+|.+|+|||||.+.++.....
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~ 28 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVS 28 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 5899999999999999999987654
No 446
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=92.06 E-value=0.089 Score=48.52 Aligned_cols=28 Identities=29% Similarity=0.293 Sum_probs=21.3
Q ss_pred cCCccEEEEEcCCCChHHHHHHHHHHHh
Q 047163 173 DDKLNIIGVYGMGGVGKTTLVKQVAKQV 200 (658)
Q Consensus 173 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 200 (658)
....-.|+|+|.+|+|||||...+.+..
T Consensus 27 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~ 54 (204)
T 4gzl_A 27 QGQAIKCVVVGDGAVGKTCLLISYTTNA 54 (204)
T ss_dssp ---CEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred cCCeEEEEEECcCCCCHHHHHHHHHhCC
Confidence 3444568999999999999999888653
No 447
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=91.97 E-value=0.7 Score=49.20 Aligned_cols=49 Identities=24% Similarity=0.180 Sum_probs=35.4
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCCCCHHHHHHHHH
Q 047163 177 NIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQNPDHHKIQDKLA 228 (658)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~ 228 (658)
.++.|.|.+|+||||+|.+++.....+. =..++|++... +..++...++
T Consensus 243 ~l~li~G~pG~GKT~lal~~a~~~a~~~-g~~vl~~s~E~--s~~~l~~r~~ 291 (503)
T 1q57_A 243 EVIMVTSGSGMVMSTFVRQQALQWGTAM-GKKVGLAMLEE--SVEETAEDLI 291 (503)
T ss_dssp CEEEEEESSCHHHHHHHHHHHHHHTTTS-CCCEEEEESSS--CHHHHHHHHH
T ss_pred eEEEEeecCCCCchHHHHHHHHHHHHhc-CCcEEEEeccC--CHHHHHHHHH
Confidence 4889999999999999999998876431 12567776644 4556665554
No 448
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=91.95 E-value=0.088 Score=51.61 Aligned_cols=25 Identities=28% Similarity=0.421 Sum_probs=22.0
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHHh
Q 047163 176 LNIIGVYGMGGVGKTTLVKQVAKQV 200 (658)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~ 200 (658)
.++|.|+|+.|+||||||..++...
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 3589999999999999999998654
No 449
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=91.93 E-value=0.19 Score=51.16 Aligned_cols=27 Identities=26% Similarity=0.115 Sum_probs=23.3
Q ss_pred CCccEEEEEcCCCChHHHHHHHHHHHh
Q 047163 174 DKLNIIGVYGMGGVGKTTLVKQVAKQV 200 (658)
Q Consensus 174 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 200 (658)
....+++|+|++|+|||||++.+....
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 344699999999999999999999754
No 450
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=91.93 E-value=0.09 Score=51.89 Aligned_cols=23 Identities=30% Similarity=0.456 Sum_probs=21.0
Q ss_pred cEEEEEcCCCChHHHHHHHHHHH
Q 047163 177 NIIGVYGMGGVGKTTLVKQVAKQ 199 (658)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~ 199 (658)
.+|.|.|++|+||||+|+.+...
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57899999999999999999874
No 451
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=91.91 E-value=0.11 Score=50.83 Aligned_cols=26 Identities=27% Similarity=0.252 Sum_probs=23.0
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHh
Q 047163 175 KLNIIGVYGMGGVGKTTLVKQVAKQV 200 (658)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 200 (658)
..++|.|+|+.|+||||||..++...
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhC
Confidence 35689999999999999999998764
No 452
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=91.89 E-value=0.094 Score=48.08 Aligned_cols=24 Identities=25% Similarity=0.433 Sum_probs=21.2
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHh
Q 047163 177 NIIGVYGMGGVGKTTLVKQVAKQV 200 (658)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~ 200 (658)
-.|+|+|.+|+|||||.+.+....
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECcCCCCHHHHHHHHhcCC
Confidence 468999999999999999998753
No 453
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=91.84 E-value=0.12 Score=49.77 Aligned_cols=26 Identities=31% Similarity=0.404 Sum_probs=23.2
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHHhh
Q 047163 176 LNIIGVYGMGGVGKTTLVKQVAKQVM 201 (658)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (658)
..++.+.|.||+||||++..+.....
T Consensus 14 ~~i~~~~GkgGvGKTTl~~~La~~l~ 39 (262)
T 1yrb_A 14 SMIVVFVGTAGSGKTTLTGEFGRYLE 39 (262)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred eEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 56889999999999999999998765
No 454
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=91.75 E-value=0.088 Score=53.03 Aligned_cols=25 Identities=36% Similarity=0.485 Sum_probs=22.2
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHhh
Q 047163 177 NIIGVYGMGGVGKTTLVKQVAKQVM 201 (658)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (658)
.+++|+|++|+|||||.+.++.-..
T Consensus 31 e~~~llGpsGsGKSTLLr~iaGl~~ 55 (359)
T 3fvq_A 31 EILFIIGASGCGKTTLLRCLAGFEQ 55 (359)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTSSC
T ss_pred CEEEEECCCCchHHHHHHHHhcCCC
Confidence 4899999999999999999987554
No 455
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=91.73 E-value=0.089 Score=51.32 Aligned_cols=25 Identities=32% Similarity=0.480 Sum_probs=22.4
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHhh
Q 047163 177 NIIGVYGMGGVGKTTLVKQVAKQVM 201 (658)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (658)
.++.|+|.+|+|||||+..+.....
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~~~~ 55 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAAQIA 55 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 4899999999999999999987654
No 456
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=91.72 E-value=0.17 Score=53.46 Aligned_cols=46 Identities=15% Similarity=-0.003 Sum_probs=34.7
Q ss_pred ccchHHHHHHHHHHhc--cCCccEEEEEcCCCChHHHHHHHHHHHhhh
Q 047163 157 FDSKMEVFQDVMEALK--DDKLNIIGVYGMGGVGKTTLVKQVAKQVME 202 (658)
Q Consensus 157 ~~gr~~~~~~l~~~l~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 202 (658)
...|.+..+.+.+... .....+|.+.|+.|+||||+|+.+......
T Consensus 374 ~f~rpeV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 374 WFSYPEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp TTSCHHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred cccChhhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 3456666666666552 334568999999999999999999999863
No 457
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=91.71 E-value=0.27 Score=46.34 Aligned_cols=31 Identities=26% Similarity=0.453 Sum_probs=26.3
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHHhhhccCCC
Q 047163 176 LNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFD 207 (658)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~ 207 (658)
..+|.|.|+.|+||||+++.+...... ..+.
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~~-~~~~ 57 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQQ-NGID 57 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHHH-TTCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHh-cCCC
Confidence 358999999999999999999998865 3455
No 458
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=91.69 E-value=0.078 Score=51.92 Aligned_cols=25 Identities=28% Similarity=0.518 Sum_probs=22.1
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHhh
Q 047163 177 NIIGVYGMGGVGKTTLVKQVAKQVM 201 (658)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (658)
.+++|+|..|+|||||.+.+..-..
T Consensus 65 e~~~i~G~NGsGKSTLlk~l~Gl~~ 89 (290)
T 2bbs_A 65 QLLAVAGSTGAGKTSLLMMIMGELE 89 (290)
T ss_dssp CEEEEEESTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCC
Confidence 4899999999999999999986543
No 459
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=91.63 E-value=0.092 Score=52.94 Aligned_cols=25 Identities=40% Similarity=0.578 Sum_probs=22.1
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHhh
Q 047163 177 NIIGVYGMGGVGKTTLVKQVAKQVM 201 (658)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (658)
.+++|+|++|+|||||.+.+..-..
T Consensus 55 ei~~IiGpnGaGKSTLlr~i~GL~~ 79 (366)
T 3tui_C 55 QIYGVIGASGAGKSTLIRCVNLLER 79 (366)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CEEEEEcCCCchHHHHHHHHhcCCC
Confidence 4899999999999999999986543
No 460
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=91.61 E-value=0.077 Score=52.73 Aligned_cols=25 Identities=24% Similarity=0.418 Sum_probs=22.2
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHHh
Q 047163 176 LNIIGVYGMGGVGKTTLVKQVAKQV 200 (658)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~ 200 (658)
.++|.|+|+.|+||||||..++...
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHC
Confidence 4589999999999999999998654
No 461
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=91.60 E-value=0.074 Score=52.45 Aligned_cols=26 Identities=19% Similarity=0.335 Sum_probs=22.3
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHHhh
Q 047163 176 LNIIGVYGMGGVGKTTLVKQVAKQVM 201 (658)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (658)
-.+++|+|..|+|||||++.+..-..
T Consensus 80 Ge~vaivG~sGsGKSTLl~ll~gl~~ 105 (306)
T 3nh6_A 80 GQTLALVGPSGAGKSTILRLLFRFYD 105 (306)
T ss_dssp TCEEEEESSSCHHHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCchHHHHHHHHHcCCC
Confidence 34899999999999999999976543
No 462
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=91.53 E-value=0.16 Score=52.38 Aligned_cols=90 Identities=19% Similarity=0.209 Sum_probs=54.9
Q ss_pred EEEEEcCCCChHHHHHHHHHHHhhhc-cCCC-EEEEEEEcCCC-CHHHHHHHHHHh--cCCC---CC-CCCCHHH-----
Q 047163 178 IIGVYGMGGVGKTTLVKQVAKQVMED-KLFD-KVVMAEVTQNP-DHHKIQDKLAFG--LGME---FG-FNENMFQ----- 243 (658)
Q Consensus 178 vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F~-~~~wv~v~~~~-~~~~~~~~i~~~--l~~~---~~-~~~~~~~----- 243 (658)
.++|.|..|+|||+|+.++.+..... ++-+ .++++-+++.. ...++.+++... +... .. .......
T Consensus 153 r~~Ifgg~G~GKt~L~~~Ia~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rtvvV~atsd~p~~~r~~a~ 232 (465)
T 3vr4_D 153 KLPVFSGSGLPHKELAAQIARQATVLDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVMFMNLANDPAIERIATP 232 (465)
T ss_dssp BCCEEECTTSCHHHHHHHHHHHCBCSSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGEEEEEEETTSCHHHHHHHH
T ss_pred EEEEeCCCCcChHHHHHHHHHHHHhccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccceEEEEECCCCCHHHHHHHH
Confidence 57899999999999999999876531 1112 66778887764 344555655432 1000 00 0111111
Q ss_pred -HHHHHHHHHh--cCCeEEEEEecCCc
Q 047163 244 -RASRLCERLK--KEKRLLIILDNIWI 267 (658)
Q Consensus 244 -~~~~l~~~l~--~~k~~LlVlDdv~~ 267 (658)
..-.+-++++ .++.+|+++||+..
T Consensus 233 ~~a~tiAEyfrd~~G~~VLl~~DslTr 259 (465)
T 3vr4_D 233 RMALTAAEYLAYEKGMHVLVIMTDMTN 259 (465)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEEECHHH
T ss_pred HHHHHHHHHHHHhcCCeEEEEEcChHH
Confidence 1223556666 38999999999864
No 463
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=91.46 E-value=0.11 Score=45.94 Aligned_cols=23 Identities=26% Similarity=0.413 Sum_probs=20.3
Q ss_pred cEEEEEcCCCChHHHHHHHHHHH
Q 047163 177 NIIGVYGMGGVGKTTLVKQVAKQ 199 (658)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~ 199 (658)
..|+|+|.+|+|||||...+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999753
No 464
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=91.45 E-value=0.32 Score=45.07 Aligned_cols=27 Identities=30% Similarity=0.367 Sum_probs=24.1
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHhhhc
Q 047163 177 NIIGVYGMGGVGKTTLVKQVAKQVMED 203 (658)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~~~ 203 (658)
..|.|-|+.|+||||+++.+.......
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l~~~ 30 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETLEQL 30 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 479999999999999999999988653
No 465
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=91.43 E-value=0.14 Score=52.77 Aligned_cols=25 Identities=20% Similarity=0.364 Sum_probs=22.3
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHH
Q 047163 175 KLNIIGVYGMGGVGKTTLVKQVAKQ 199 (658)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~ 199 (658)
...+++|+|.+|+|||||.+.+...
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl 92 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGI 92 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCC
Confidence 4459999999999999999999873
No 466
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=91.43 E-value=0.37 Score=50.65 Aligned_cols=44 Identities=30% Similarity=0.506 Sum_probs=33.7
Q ss_pred chHHHHHHHHHHhccCCccEEEEEcCCCChHHHHHHHHHHHhhhc
Q 047163 159 SKMEVFQDVMEALKDDKLNIIGVYGMGGVGKTTLVKQVAKQVMED 203 (658)
Q Consensus 159 gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 203 (658)
+....+..+...+..++ +.+.|.|.+|+||||++..+.......
T Consensus 29 ~Q~~av~~~~~~i~~~~-~~~li~G~aGTGKT~ll~~~~~~l~~~ 72 (459)
T 3upu_A 29 GQKNAFNIVMKAIKEKK-HHVTINGPAGTGATTLTKFIIEALIST 72 (459)
T ss_dssp HHHHHHHHHHHHHHSSS-CEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCC-CEEEEEeCCCCCHHHHHHHHHHHHHhc
Confidence 45556666666665433 489999999999999999999887653
No 467
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=91.38 E-value=0.1 Score=52.55 Aligned_cols=25 Identities=32% Similarity=0.598 Sum_probs=22.0
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHhh
Q 047163 177 NIIGVYGMGGVGKTTLVKQVAKQVM 201 (658)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (658)
.+++|+|+.|+|||||.+.++.-..
T Consensus 42 e~~~llGpnGsGKSTLLr~iaGl~~ 66 (355)
T 1z47_A 42 EMVGLLGPSGSGKTTILRLIAGLER 66 (355)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCC
Confidence 4899999999999999999986543
No 468
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=91.31 E-value=0.25 Score=47.73 Aligned_cols=39 Identities=18% Similarity=0.461 Sum_probs=29.8
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCC
Q 047163 177 NIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQN 217 (658)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~ 217 (658)
++|+|.|-||+||||+|..++....... ..+..++....
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la~~G--~~VlliD~D~q 40 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLHAMG--KTIMVVGCDPK 40 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHTTT--CCEEEEEECTT
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHHHCC--CcEEEEcCCCC
Confidence 5788899999999999999998876431 24566666543
No 469
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=91.25 E-value=0.23 Score=44.93 Aligned_cols=26 Identities=23% Similarity=0.221 Sum_probs=22.1
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHh
Q 047163 175 KLNIIGVYGMGGVGKTTLVKQVAKQV 200 (658)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 200 (658)
....|+|+|.+|+|||||...+....
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34578999999999999999988653
No 470
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=91.19 E-value=0.11 Score=51.89 Aligned_cols=26 Identities=27% Similarity=0.486 Sum_probs=23.1
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHh
Q 047163 175 KLNIIGVYGMGGVGKTTLVKQVAKQV 200 (658)
Q Consensus 175 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 200 (658)
..++++|+|+.|+|||||.+.+....
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cccEEEEEecCCCCHHHHHHHHHhhc
Confidence 46799999999999999999998654
No 471
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=91.13 E-value=0.13 Score=44.84 Aligned_cols=24 Identities=25% Similarity=0.425 Sum_probs=20.9
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHh
Q 047163 177 NIIGVYGMGGVGKTTLVKQVAKQV 200 (658)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~ 200 (658)
+.|.++|.+|+|||||...+....
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999998653
No 472
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=91.13 E-value=0.11 Score=52.39 Aligned_cols=33 Identities=21% Similarity=0.252 Sum_probs=25.5
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEE
Q 047163 177 NIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMA 212 (658)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv 212 (658)
.+++|+|++|+|||||.+.++.-... ..+.+++
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~~p---~~G~I~i 62 (359)
T 2yyz_A 30 EFVALLGPSGCGKTTTLLMLAGIYKP---TSGEIYF 62 (359)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSSCC---SEEEEEE
T ss_pred CEEEEEcCCCchHHHHHHHHHCCCCC---CccEEEE
Confidence 48999999999999999999865432 2355554
No 473
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=91.13 E-value=0.12 Score=46.59 Aligned_cols=24 Identities=17% Similarity=0.358 Sum_probs=21.4
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHh
Q 047163 177 NIIGVYGMGGVGKTTLVKQVAKQV 200 (658)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~ 200 (658)
.+.+|+|..|+|||||+..++.-.
T Consensus 27 g~~~i~G~NGsGKStll~ai~~~l 50 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILFVL 50 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHHHT
T ss_pred CcEEEECCCCCCHHHHHHHHHHHH
Confidence 488999999999999999998754
No 474
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=91.10 E-value=0.11 Score=52.68 Aligned_cols=33 Identities=21% Similarity=0.281 Sum_probs=25.5
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEE
Q 047163 177 NIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMA 212 (658)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv 212 (658)
.+++|+|++|+|||||.+.+..-... -.+.+++
T Consensus 30 e~~~llGpsGsGKSTLLr~iaGl~~p---~~G~I~i 62 (381)
T 3rlf_A 30 EFVVFVGPSGCGKSTLLRMIAGLETI---TSGDLFI 62 (381)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSCC---SEEEEEE
T ss_pred CEEEEEcCCCchHHHHHHHHHcCCCC---CCeEEEE
Confidence 48999999999999999999865543 2345544
No 475
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=91.09 E-value=0.11 Score=47.02 Aligned_cols=21 Identities=43% Similarity=0.591 Sum_probs=19.3
Q ss_pred EEEEEcCCCChHHHHHHHHHH
Q 047163 178 IIGVYGMGGVGKTTLVKQVAK 198 (658)
Q Consensus 178 vi~I~G~gGiGKTtLa~~v~~ 198 (658)
-|+|+|.+|+|||||.+.+..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 479999999999999999876
No 476
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=91.08 E-value=0.092 Score=54.51 Aligned_cols=27 Identities=19% Similarity=0.389 Sum_probs=23.5
Q ss_pred CCccEEEEEcCCCChHHHHHHHHHHHh
Q 047163 174 DKLNIIGVYGMGGVGKTTLVKQVAKQV 200 (658)
Q Consensus 174 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 200 (658)
....+|.|+|++|+||||+|+.+..+.
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 456799999999999999999998654
No 477
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=91.08 E-value=0.073 Score=50.25 Aligned_cols=24 Identities=29% Similarity=0.263 Sum_probs=21.6
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHH
Q 047163 176 LNIIGVYGMGGVGKTTLVKQVAKQ 199 (658)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~ 199 (658)
-.+|+|.|..|+||||+++.+...
T Consensus 20 g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 20 PFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CEEEEEECSTTSCHHHHHHTTGGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHhc
Confidence 458999999999999999998765
No 478
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=91.05 E-value=0.14 Score=48.64 Aligned_cols=26 Identities=31% Similarity=0.333 Sum_probs=23.1
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHHhh
Q 047163 176 LNIIGVYGMGGVGKTTLVKQVAKQVM 201 (658)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (658)
...|+|.|..|+||||+++.+.....
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 35799999999999999999998763
No 479
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=91.04 E-value=1.2 Score=47.04 Aligned_cols=57 Identities=19% Similarity=0.240 Sum_probs=39.9
Q ss_pred HHHHhc-cCCccEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCCCCH-HHHHHHH
Q 047163 167 VMEALK-DDKLNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQNPDH-HKIQDKL 227 (658)
Q Consensus 167 l~~~l~-~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~-~~~~~~i 227 (658)
.++.|. -..-..++|.|..|+|||+|+.++.+.. +-+.++++-+++.... .++.+++
T Consensus 217 vID~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~----~~~~~V~~~iGER~~Ev~e~~~~~ 275 (588)
T 3mfy_A 217 VIDTFFPQAKGGTAAIPGPAGSGKTVTQHQLAKWS----DAQVVIYIGCGERGNEMTDVLEEF 275 (588)
T ss_dssp HHHHHSCEETTCEEEECSCCSHHHHHHHHHHHHHS----SCSEEEEEECCSSSSHHHHHHHHT
T ss_pred hhhccCCcccCCeEEeecCCCCCHHHHHHHHHhcc----CCCEEEEEEecccHHHHHHHHHHH
Confidence 445554 1223479999999999999999987653 2467888888887654 4455554
No 480
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=91.00 E-value=0.12 Score=52.33 Aligned_cols=33 Identities=21% Similarity=0.304 Sum_probs=25.5
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEE
Q 047163 177 NIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMA 212 (658)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv 212 (658)
.+++|+|+.|+|||||.+.++.-... ..+.+++
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~~p---~~G~I~i 62 (362)
T 2it1_A 30 EFMALLGPSGSGKSTLLYTIAGIYKP---TSGKIYF 62 (362)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSCC---SEEEEEE
T ss_pred CEEEEECCCCchHHHHHHHHhcCCCC---CceEEEE
Confidence 48999999999999999999865532 2355554
No 481
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=90.97 E-value=0.21 Score=53.55 Aligned_cols=27 Identities=33% Similarity=0.493 Sum_probs=24.2
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHHhhh
Q 047163 176 LNIIGVYGMGGVGKTTLVKQVAKQVME 202 (658)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~ 202 (658)
-.+|+|+|+.|+|||||++.+......
T Consensus 369 G~iI~LiG~sGSGKSTLar~La~~L~~ 395 (552)
T 3cr8_A 369 GFTVFFTGLSGAGKSTLARALAARLME 395 (552)
T ss_dssp CEEEEEEESSCHHHHHHHHHHHHHHHT
T ss_pred ceEEEEECCCCChHHHHHHHHHHhhcc
Confidence 358999999999999999999998764
No 482
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=90.91 E-value=0.31 Score=45.45 Aligned_cols=30 Identities=30% Similarity=0.324 Sum_probs=25.5
Q ss_pred cCCccEEEEEcCCCChHHHHHHHHHHHhhh
Q 047163 173 DDKLNIIGVYGMGGVGKTTLVKQVAKQVME 202 (658)
Q Consensus 173 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 202 (658)
......|.|.|+.|+||||+++.+.+....
T Consensus 18 ~~~~~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 18 GPGSMFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp -CCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 344568999999999999999999998765
No 483
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=90.86 E-value=0.1 Score=52.45 Aligned_cols=33 Identities=18% Similarity=0.241 Sum_probs=25.5
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEE
Q 047163 177 NIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMA 212 (658)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv 212 (658)
.+++|+|++|+|||||.+.++.-... ..+.+++
T Consensus 27 e~~~llGpnGsGKSTLLr~iaGl~~p---~~G~I~~ 59 (348)
T 3d31_A 27 EYFVILGPTGAGKTLFLELIAGFHVP---DSGRILL 59 (348)
T ss_dssp CEEEEECCCTHHHHHHHHHHHTSSCC---SEEEEEE
T ss_pred CEEEEECCCCccHHHHHHHHHcCCCC---CCcEEEE
Confidence 48999999999999999999865432 2355554
No 484
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=90.86 E-value=0.12 Score=52.46 Aligned_cols=25 Identities=28% Similarity=0.385 Sum_probs=22.1
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHhh
Q 047163 177 NIIGVYGMGGVGKTTLVKQVAKQVM 201 (658)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (658)
.+++|+|++|+|||||.+.++.-..
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~~ 54 (372)
T 1g29_1 30 EFMILLGPSGCGKTTTLRMIAGLEE 54 (372)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred CEEEEECCCCcHHHHHHHHHHcCCC
Confidence 4899999999999999999986543
No 485
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=90.85 E-value=0.14 Score=53.14 Aligned_cols=92 Identities=16% Similarity=0.141 Sum_probs=56.4
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHhhhccC--CCEEEEEEEcCCC-CHHHHHHHHHHhcCCCC------CCCCCHH-----
Q 047163 177 NIIGVYGMGGVGKTTLVKQVAKQVMEDKL--FDKVVMAEVTQNP-DHHKIQDKLAFGLGMEF------GFNENMF----- 242 (658)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~--F~~~~wv~v~~~~-~~~~~~~~i~~~l~~~~------~~~~~~~----- 242 (658)
..++|.|..|+|||+|+.++++.....+. =+.++++-+++.. ...++.+++...-.... .......
T Consensus 153 Qr~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m~rtvvV~~tsd~p~~~r~~~ 232 (469)
T 2c61_A 153 QKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFLNLADDPAVERIVT 232 (469)
T ss_dssp CBCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSGGGGEEEEEEETTSCHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCcHHHHHHHHHHHhccCccceEEEEECCCCCHHHHHHH
Confidence 36789999999999999999988764221 1356777787765 34556666654211100 0011111
Q ss_pred -HHHHHHHHHHh--cCCeEEEEEecCCcc
Q 047163 243 -QRASRLCERLK--KEKRLLIILDNIWIE 268 (658)
Q Consensus 243 -~~~~~l~~~l~--~~k~~LlVlDdv~~~ 268 (658)
...-.+-++++ .++.+|+++||+..-
T Consensus 233 ~~~a~tiAEyfrdd~G~dVLl~~DsltR~ 261 (469)
T 2c61_A 233 PRMALTAAEYLAYEHGMHVLVILTDITNY 261 (469)
T ss_dssp HHHHHHHHHHHHHHHCCEEEEEEECHHHH
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEeCHHHH
Confidence 11223445555 489999999998543
No 486
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=90.85 E-value=0.097 Score=54.40 Aligned_cols=27 Identities=33% Similarity=0.525 Sum_probs=24.0
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHHhhh
Q 047163 176 LNIIGVYGMGGVGKTTLVKQVAKQVME 202 (658)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~ 202 (658)
..+|+|+|.+|+||||++..+......
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~ 125 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQK 125 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 468999999999999999999987764
No 487
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=90.80 E-value=0.14 Score=52.03 Aligned_cols=25 Identities=36% Similarity=0.539 Sum_probs=22.5
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHhh
Q 047163 177 NIIGVYGMGGVGKTTLVKQVAKQVM 201 (658)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (658)
++|+|.|+.|+||||||..++....
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCC
Confidence 5899999999999999999997764
No 488
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=90.80 E-value=0.12 Score=52.33 Aligned_cols=33 Identities=21% Similarity=0.282 Sum_probs=25.5
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEE
Q 047163 177 NIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMA 212 (658)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv 212 (658)
.+++|+|+.|+|||||.+.++.-... ..+.+++
T Consensus 38 e~~~llGpnGsGKSTLLr~iaGl~~p---~~G~I~i 70 (372)
T 1v43_A 38 EFLVLLGPSGCGKTTTLRMIAGLEEP---TEGRIYF 70 (372)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSCC---SEEEEEE
T ss_pred CEEEEECCCCChHHHHHHHHHcCCCC---CceEEEE
Confidence 48999999999999999999865432 2355554
No 489
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=90.69 E-value=0.46 Score=49.00 Aligned_cols=90 Identities=17% Similarity=0.184 Sum_probs=55.2
Q ss_pred EEEEEcCCCChHHHHHHHHHHHhhhc--------cCCC-EEEEEEEcCCC-CHHHHHHHHHHh--cCC-----CCCCCCC
Q 047163 178 IIGVYGMGGVGKTTLVKQVAKQVMED--------KLFD-KVVMAEVTQNP-DHHKIQDKLAFG--LGM-----EFGFNEN 240 (658)
Q Consensus 178 vi~I~G~gGiGKTtLa~~v~~~~~~~--------~~F~-~~~wv~v~~~~-~~~~~~~~i~~~--l~~-----~~~~~~~ 240 (658)
.++|.|..|+|||+|+.++.+..... ++-+ .++++-+++.. ...++.+++... +.. .......
T Consensus 149 r~~Ifgg~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~~g~~~rtvvv~~t~d~p~ 228 (464)
T 3gqb_B 149 KLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERTGALSRSVLFLNKADDPT 228 (464)
T ss_dssp BCCEEEETTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHHTSGGGGEEEEEEETTSCT
T ss_pred EEEEecCCCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhhcccccceEEEEECCCCCH
Confidence 67899999999999999998886541 1222 56777887764 344555555432 100 0010111
Q ss_pred HHH-----HHHHHHHHHh--cCCeEEEEEecCCc
Q 047163 241 MFQ-----RASRLCERLK--KEKRLLIILDNIWI 267 (658)
Q Consensus 241 ~~~-----~~~~l~~~l~--~~k~~LlVlDdv~~ 267 (658)
... ..-.+-++++ .++.+|+++||+..
T Consensus 229 ~~r~~~~~~a~tiAEyfrd~~G~~VLl~~DdlTr 262 (464)
T 3gqb_B 229 IERILTPRMALTVAEYLAFEHDYHVLVILTDMTN 262 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCEEEEEEETHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCeEEEEEcChHH
Confidence 111 1224556665 37999999999864
No 490
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=90.57 E-value=0.14 Score=44.71 Aligned_cols=23 Identities=39% Similarity=0.579 Sum_probs=20.3
Q ss_pred EEEEEcCCCChHHHHHHHHHHHh
Q 047163 178 IIGVYGMGGVGKTTLVKQVAKQV 200 (658)
Q Consensus 178 vi~I~G~gGiGKTtLa~~v~~~~ 200 (658)
.|.++|.+|+|||||+..+....
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47899999999999999998653
No 491
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=90.57 E-value=0.14 Score=52.03 Aligned_cols=27 Identities=22% Similarity=0.353 Sum_probs=23.6
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHHhhh
Q 047163 176 LNIIGVYGMGGVGKTTLVKQVAKQVME 202 (658)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~ 202 (658)
...++|+|.+|+|||||++.+......
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~~ 196 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFNT 196 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTC
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 357899999999999999999987654
No 492
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=90.57 E-value=0.18 Score=46.92 Aligned_cols=38 Identities=24% Similarity=0.191 Sum_probs=27.5
Q ss_pred EEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCC
Q 047163 178 IIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQN 217 (658)
Q Consensus 178 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~ 217 (658)
.|.+.|.||+||||+|..+......+ .++ +..+.+...
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~~-G~~-V~v~d~D~q 45 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLRQ-GVR-VMAGVVETH 45 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHT-TCC-EEEEECCCT
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHC-CCC-EEEEEeCCC
Confidence 47889999999999999999887653 233 344455443
No 493
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=90.54 E-value=0.3 Score=46.37 Aligned_cols=42 Identities=31% Similarity=0.399 Sum_probs=31.7
Q ss_pred EEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCCCCHH
Q 047163 178 IIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQNPDHH 221 (658)
Q Consensus 178 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~ 221 (658)
.|+|.|-||+||||+|..+........ ..+.-++.....+..
T Consensus 2 kI~vs~kGGvGKTt~a~~LA~~la~~g--~~VlliD~D~~~~l~ 43 (254)
T 3kjh_A 2 KLAVAGKGGVGKTTVAAGLIKIMASDY--DKIYAVDGDPDSCLG 43 (254)
T ss_dssp EEEEECSSSHHHHHHHHHHHHHHTTTC--SCEEEEEECTTSCHH
T ss_pred EEEEecCCCCCHHHHHHHHHHHHHHCC--CeEEEEeCCCCcChH
Confidence 367799999999999999999887532 356677776655444
No 494
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=90.51 E-value=0.096 Score=52.83 Aligned_cols=25 Identities=32% Similarity=0.550 Sum_probs=22.1
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHhh
Q 047163 177 NIIGVYGMGGVGKTTLVKQVAKQVM 201 (658)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~ 201 (658)
.+++|+|+.|+|||||.+.++.-..
T Consensus 32 e~~~llGpnGsGKSTLLr~iaGl~~ 56 (353)
T 1oxx_K 32 ERFGILGPSGAGKTTFMRIIAGLDV 56 (353)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTSSC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCC
Confidence 4899999999999999999986543
No 495
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=90.42 E-value=0.15 Score=45.94 Aligned_cols=23 Identities=26% Similarity=0.413 Sum_probs=20.7
Q ss_pred cEEEEEcCCCChHHHHHHHHHHH
Q 047163 177 NIIGVYGMGGVGKTTLVKQVAKQ 199 (658)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~ 199 (658)
..|+|+|.+|+|||||...+...
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999864
No 496
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=90.36 E-value=0.15 Score=44.74 Aligned_cols=24 Identities=29% Similarity=0.527 Sum_probs=20.8
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHh
Q 047163 177 NIIGVYGMGGVGKTTLVKQVAKQV 200 (658)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~ 200 (658)
--|.|+|.+|+|||||...+.+..
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEEECcCCCCHHHHHHHHHcCC
Confidence 357899999999999999998653
No 497
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=90.23 E-value=0.22 Score=45.09 Aligned_cols=26 Identities=19% Similarity=0.037 Sum_probs=21.6
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHhhh
Q 047163 177 NIIGVYGMGGVGKTTLVKQVAKQVME 202 (658)
Q Consensus 177 ~vi~I~G~gGiGKTtLa~~v~~~~~~ 202 (658)
.++.|+|+.|+||||++..+..+...
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~ 29 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKL 29 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 47889999999999999777766543
No 498
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=90.22 E-value=0.36 Score=47.13 Aligned_cols=40 Identities=25% Similarity=0.507 Sum_probs=30.3
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHHhhhccCCCEEEEEEEcCC
Q 047163 176 LNIIGVYGMGGVGKTTLVKQVAKQVMEDKLFDKVVMAEVTQN 217 (658)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~ 217 (658)
.++|+|.|-||+||||+|..++....... ..+..|+....
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~~La~~G--~rVlliD~D~q 41 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVAALAEMG--KKVMIVGCDPK 41 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHHHTT--CCEEEEEECSS
T ss_pred ceEEEEeCCCcCcHHHHHHHHHHHHHHCC--CeEEEEecCCC
Confidence 36888899999999999999998876431 24566666544
No 499
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=90.20 E-value=0.39 Score=48.27 Aligned_cols=45 Identities=33% Similarity=0.414 Sum_probs=32.7
Q ss_pred cCCccEEEEEcCCCChHHHHHHHHHHHhh--hccCCCEEEEEEEcCCCC
Q 047163 173 DDKLNIIGVYGMGGVGKTTLVKQVAKQVM--EDKLFDKVVMAEVTQNPD 219 (658)
Q Consensus 173 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~--~~~~F~~~~wv~v~~~~~ 219 (658)
....+++.+.|-||+||||+|..++.... .. =..+.-++.....+
T Consensus 15 ~~~~~i~~~~gkGGvGKTt~a~~lA~~la~~~~--g~~vllid~D~~~~ 61 (348)
T 3io3_A 15 HDSLKWIFVGGKGGVGKTTTSSSVAVQLALAQP--NEQFLLISTDPAHN 61 (348)
T ss_dssp CTTCSEEEEECSTTSSHHHHHHHHHHHHHHHCT--TSCEEEEECCSSCH
T ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHHHHhcC--CCeEEEEECCCCCC
Confidence 45568999999999999999999998876 32 12455666654433
No 500
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=90.19 E-value=0.24 Score=49.95 Aligned_cols=27 Identities=22% Similarity=0.289 Sum_probs=23.6
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHHhhh
Q 047163 176 LNIIGVYGMGGVGKTTLVKQVAKQVME 202 (658)
Q Consensus 176 ~~vi~I~G~gGiGKTtLa~~v~~~~~~ 202 (658)
-.+++|+|+.|+||||+.+.+......
T Consensus 123 ~g~i~I~GptGSGKTTlL~~l~g~~~~ 149 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTLAAMLDYLNN 149 (356)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcccC
Confidence 349999999999999999999887654
Done!