Query 047165
Match_columns 605
No_of_seqs 151 out of 194
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 14:26:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047165.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047165hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3p8c_D Wiskott-aldrich syndrom 32.0 14 0.00047 37.9 1.1 14 7-20 120-133 (279)
2 3ukx_C Bimax2 peptide; arm rep 30.8 13 0.00046 25.5 0.5 10 67-76 3-12 (28)
3 1g1e_B SIN3A; four-helix bundl 13.4 1.3E+02 0.0044 25.5 3.2 25 483-512 15-39 (89)
4 2cr7_A Paired amphipathic heli 12.8 1.4E+02 0.0048 24.7 3.2 25 484-513 16-40 (80)
5 2czy_A Paired amphipathic heli 12.1 1.3E+02 0.0044 24.7 2.7 26 483-513 9-34 (77)
6 1e91_A Paired amphipathic heli 11.3 1.7E+02 0.0057 24.6 3.2 31 483-519 12-42 (85)
7 2f05_A Paired amphipathic heli 10.1 1.9E+02 0.0064 25.4 3.2 30 484-519 13-42 (105)
8 2knc_B Integrin beta-3; transm 10.0 6.8E+02 0.023 20.7 6.4 34 565-598 21-54 (79)
9 2x7l_M HIV REV; nuclear export 5.9 1.8E+02 0.0062 26.3 1.1 14 47-60 20-33 (115)
10 1smv_A Sesbania mosaic virus c 5.1 1.5E+02 0.005 30.1 0.0 23 53-82 21-43 (266)
No 1
>3p8c_D Wiskott-aldrich syndrome protein family member 1; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=31.99 E-value=14 Score=37.87 Aligned_cols=14 Identities=21% Similarity=0.377 Sum_probs=8.5
Q ss_pred chhHHhHhhhhhhc
Q 047165 7 GLFQIYHFCYRAMG 20 (605)
Q Consensus 7 ~~~~~~~~~~~~m~ 20 (605)
-+.+.|+-|.+.-.
T Consensus 120 ~V~e~Y~~C~~PP~ 133 (279)
T 3p8c_D 120 PLQETYDVCEQPPP 133 (279)
T ss_dssp HHHHHHHHSBCCCC
T ss_pred HHHHHHHhcCCCCC
Confidence 35667777766543
No 2
>3ukx_C Bimax2 peptide; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding, protein transport-IN complex; 2.20A {Mus musculus}
Probab=30.77 E-value=13 Score=25.46 Aligned_cols=10 Identities=30% Similarity=0.900 Sum_probs=3.5
Q ss_pred hhhhhhhhcc
Q 047165 67 NRKRKKHKKK 76 (605)
Q Consensus 67 ~~~~~~~~k~ 76 (605)
||+|++|||+
T Consensus 3 rrrrrrkrkr 12 (28)
T 3ukx_C 3 RRRRRRKRKR 12 (28)
T ss_dssp ---CCCCCCC
T ss_pred hhHHHHHhhc
Confidence 3444445555
No 3
>1g1e_B SIN3A; four-helix bundle, protein-peptide complex, transcription; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1s5q_B 1s5r_B 2l9s_B
Probab=13.44 E-value=1.3e+02 Score=25.48 Aligned_cols=25 Identities=36% Similarity=0.591 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHhhhcCCChhhHHHHHHHHH
Q 047165 483 MLIDIIKHSFLAKFNDIKPIAYSEFLEDLC 512 (605)
Q Consensus 483 vlVDwiKHAFItKFN~Irp~vY~~f~~~L~ 512 (605)
-.|+-|| ++|-+ .|.+|++|+++|-
T Consensus 15 ~YvnkVK----~rF~~-~p~~Y~~FL~IL~ 39 (89)
T 1g1e_B 15 NYVNKIK----NRFQG-QPDIYKAFLEILH 39 (89)
T ss_dssp HHHHHHH----HHTTT-CHHHHHHHHHHHH
T ss_pred HHHHHHH----HHHcc-ChHHHHHHHHHHH
Confidence 3466677 45655 8999999999987
No 4
>2cr7_A Paired amphipathic helix protein SIN3B; paired amphipathic helix repeat, transcriptional repressor, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rmr_A 2rms_A
Probab=12.84 E-value=1.4e+02 Score=24.73 Aligned_cols=25 Identities=32% Similarity=0.603 Sum_probs=18.5
Q ss_pred HHHHHHHHHHhhhcCCChhhHHHHHHHHHH
Q 047165 484 LIDIIKHSFLAKFNDIKPIAYSEFLEDLCK 513 (605)
Q Consensus 484 lVDwiKHAFItKFN~Irp~vY~~f~~~L~~ 513 (605)
.++-+|..| -+ .|.+|.+|+++|-.
T Consensus 16 yl~~VK~rF----~~-~p~~Y~~FL~im~~ 40 (80)
T 2cr7_A 16 YLDQVKIRF----GS-DPATYNGFLEIMKE 40 (80)
T ss_dssp HHHHHHHHT----SS-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHH----cc-ChHHHHHHHHHHHH
Confidence 466777555 44 79999999998753
No 5
>2czy_A Paired amphipathic helix protein SIN3B; SIN3, PAH1, transcriptional repressor, gene regulation; NMR {Mus musculus}
Probab=12.08 E-value=1.3e+02 Score=24.73 Aligned_cols=26 Identities=31% Similarity=0.511 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHhhhcCCChhhHHHHHHHHHH
Q 047165 483 MLIDIIKHSFLAKFNDIKPIAYSEFLEDLCK 513 (605)
Q Consensus 483 vlVDwiKHAFItKFN~Irp~vY~~f~~~L~~ 513 (605)
-.++-+|..|- + .|.+|.+|+++|..
T Consensus 9 ~yl~~VK~~F~----~-~p~~Y~~FL~im~~ 34 (77)
T 2czy_A 9 TYLDQVKIRFG----S-DPATYNGFLEIMKE 34 (77)
T ss_dssp HHHHHHHHHTT----T-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHc----c-ChHHHHHHHHHHHH
Confidence 35677786664 3 69999999998753
No 6
>1e91_A Paired amphipathic helix protein SIN3B; eukaryotic transcriptional regulation, SIN3, PAH domains, protein-protein interactions; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1pd7_A
Probab=11.35 E-value=1.7e+02 Score=24.57 Aligned_cols=31 Identities=35% Similarity=0.485 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHhhhcCCChhhHHHHHHHHHHHHhhcc
Q 047165 483 MLIDIIKHSFLAKFNDIKPIAYSEFLEDLCKQTLNMQ 519 (605)
Q Consensus 483 vlVDwiKHAFItKFN~Irp~vY~~f~~~L~~D~~~~~ 519 (605)
-.|+-+| ++|=+ .|.+|++|+++|. |+-..+
T Consensus 12 ~yv~kVK----~rF~~-~p~~Y~~FL~il~-~yk~~~ 42 (85)
T 1e91_A 12 SYVNKIK----TRFLD-HPEIYRSFLEILH-TYQKEQ 42 (85)
T ss_dssp HHHHHHH----HHTSS-CHHHHHHHHHHHH-HHHHTT
T ss_pred HHHHHHH----HHHhc-ChHHHHHHHHHHH-HHHHcc
Confidence 3466667 45555 7999999999995 565543
No 7
>2f05_A Paired amphipathic helix protein SIN3B; helix bundle, transcription repressor; NMR {Mus musculus} SCOP: a.59.1.1
Probab=10.07 E-value=1.9e+02 Score=25.39 Aligned_cols=30 Identities=37% Similarity=0.516 Sum_probs=21.6
Q ss_pred HHHHHHHHHHhhhcCCChhhHHHHHHHHHHHHhhcc
Q 047165 484 LIDIIKHSFLAKFNDIKPIAYSEFLEDLCKQTLNMQ 519 (605)
Q Consensus 484 lVDwiKHAFItKFN~Irp~vY~~f~~~L~~D~~~~~ 519 (605)
.|+-|| ++|=+ .|.+|++|+++|- |+-..+
T Consensus 13 YvnkVK----~rF~d-~p~vY~~FL~IL~-~yk~~~ 42 (105)
T 2f05_A 13 YVNKIK----TRFLD-HPEIYRSFLEILH-TYQKEQ 42 (105)
T ss_dssp HHHHHH----HHTTT-CHHHHHHHHHHHH-HHHHHH
T ss_pred HHHHHH----HHHcc-ChHHHHHHHHHHH-HHHhcc
Confidence 466667 45555 8999999999994 565433
No 8
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=10.01 E-value=6.8e+02 Score=20.72 Aligned_cols=34 Identities=9% Similarity=0.123 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 047165 565 LSAMTYVMLASLKVMIGMGLQRHATWYVKRCQKR 598 (605)
Q Consensus 565 l~~~~f~~Lv~lKlllg~~Ll~~A~~~v~~~~~~ 598 (605)
+++++.++|++.|++..+-=++-=.++-+..++.
T Consensus 21 illiGllllliwk~~~~i~DrrE~~kFEkE~~~~ 54 (79)
T 2knc_B 21 ILLIGLAALLIWKLLITIHDRKEFAKFEEERARA 54 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3456677778888887776665555555555544
No 9
>2x7l_M HIV REV; nuclear export, immune system, post-transcriptional regulation; 3.17A {Human immunodeficiency virus type 3}
Probab=5.91 E-value=1.8e+02 Score=26.29 Aligned_cols=14 Identities=29% Similarity=0.389 Sum_probs=10.2
Q ss_pred cccccCCCCCCCcc
Q 047165 47 LFRRSNSLPTHRHT 60 (605)
Q Consensus 47 ~~~rs~~~~~~~~~ 60 (605)
+.|-|||-|....+
T Consensus 20 iLyQSNPyP~peGT 33 (115)
T 2x7l_M 20 FLYQSNPPPNPEGT 33 (115)
T ss_dssp HHHHSSCCCCCCCC
T ss_pred HHHccCCCCCCCCc
Confidence 46889999877533
No 10
>1smv_A Sesbania mosaic virus coat protein; coat protein (viral), icosahedral virus; 3.00A {Sesbania mosaic virus} SCOP: b.121.4.7 PDB: 1x33_A 1x35_A 2vq0_A
Probab=5.07 E-value=1.5e+02 Score=30.13 Aligned_cols=23 Identities=22% Similarity=0.478 Sum_probs=0.0
Q ss_pred CCCCCCccccCChhhhhhhhhhccCCCCCc
Q 047165 53 SLPTHRHTEVSMPKNRKRKKHKKKKQSSPD 82 (605)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~ 82 (605)
|.|.++ ++|+||.||+++.++|+
T Consensus 21 ~~~~~~-------~~~~~~~~~~~~~~~~~ 43 (266)
T 1smv_A 21 PQPKAG-------RRRNRRRQRSAVQQLPP 43 (266)
T ss_dssp ------------------------------
T ss_pred Cccccc-------chhhhhhhhhhccCCCC
Done!