Query 047165
Match_columns 605
No_of_seqs 151 out of 194
Neff 3.9
Searched_HMMs 13730
Date Mon Mar 25 14:26:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047165.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/047165hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1r3jc_ f.14.1.1 (C:) Potassiu 19.0 76 0.0055 24.7 5.2 24 578-601 80-103 (103)
2 d2g7sa1 a.4.1.9 (A:3-76) Putat 10.1 1.7E+02 0.012 20.9 4.6 36 314-349 35-70 (74)
3 d2f05a1 a.59.1.1 (A:1-85) Sin3 8.8 86 0.0063 24.1 2.5 18 495-513 20-37 (85)
4 d1wj5a_ a.4.5.59 (A:) OB fold- 8.2 37 0.0027 28.8 -0.0 24 418-441 86-110 (120)
5 d1s5qb_ a.59.1.1 (B:) Sin3A {M 6.8 1.2E+02 0.0088 23.4 2.5 25 484-513 16-40 (89)
6 d1qhba_ a.111.1.2 (A:) Haloper 6.0 1.5E+02 0.011 30.8 3.3 40 470-509 372-414 (595)
7 d1hfxa_ d.2.1.2 (A:) alpha-Lac 5.6 40 0.0029 28.4 -1.2 27 3-29 47-76 (123)
8 d3cx5d2 f.23.11.1 (D:261-307) 5.1 3.5E+02 0.026 19.0 4.0 23 574-596 9-31 (47)
9 d2i9ca1 a.118.1.25 (A:3-123) H 4.4 2.4E+02 0.017 23.4 3.0 21 431-451 1-21 (121)
10 d1n1qa_ a.25.1.1 (A:) Dodecame 4.2 1.8E+02 0.013 23.4 2.1 21 319-339 28-49 (149)
No 1
>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=19.00 E-value=76 Score=24.75 Aligned_cols=24 Identities=38% Similarity=0.637 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccc
Q 047165 578 VMIGMGLQRHATWYVKRCQKRKHH 601 (605)
Q Consensus 578 lllg~~Ll~~A~~~v~~~~~~~~~ 601 (605)
.++++.+-..+..++++.++||.|
T Consensus 80 ~~~~~~~~~i~~~~~~~~~~rr~h 103 (103)
T d1r3jc_ 80 TSFGLVTAALATWFVGREQERRGH 103 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCC
Confidence 445777778889999999888887
No 2
>d2g7sa1 a.4.1.9 (A:3-76) Putative transcriptional regulator Atu0279 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=10.07 E-value=1.7e+02 Score=20.93 Aligned_cols=36 Identities=11% Similarity=0.044 Sum_probs=26.0
Q ss_pred ccchhhhhheecccccchhhhHHHHHHHHHHHHHhh
Q 047165 314 GTDISLIYHMIRGQGTIKLYVVYNVLEIFDKLCQSF 349 (605)
Q Consensus 314 ~~D~S~iYH~IRgQs~IKLYVifNmLEV~DKL~sSf 349 (605)
-+..+.+||+..+...+-..++-.+.+-.+.-+..+
T Consensus 35 gvs~~~iY~~F~sK~~L~~~~~~~~~~~~~~~~~~i 70 (74)
T d2g7sa1 35 GIRNASIHHHFPSKSDLVCKLVSQYRQEAEAGIAEL 70 (74)
T ss_dssp CCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcCcchHHHHCcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456678999999999988888776666555544443
No 3
>d2f05a1 a.59.1.1 (A:1-85) Sin3B {Mouse (Mus musculus) [TaxId: 10090]}
Probab=8.84 E-value=86 Score=24.07 Aligned_cols=18 Identities=44% Similarity=0.695 Sum_probs=14.0
Q ss_pred hhcCCChhhHHHHHHHHHH
Q 047165 495 KFNDIKPIAYSEFLEDLCK 513 (605)
Q Consensus 495 KFN~Irp~vY~~f~~~L~~ 513 (605)
+|-. .|.+|++|+++|..
T Consensus 20 rf~~-~p~~Y~~FL~il~~ 37 (85)
T d2f05a1 20 RFLD-HPEIYRSFLEILHT 37 (85)
T ss_dssp HTTT-CHHHHHHHHHHHHH
T ss_pred HHcc-CHHHHHHHHHHHHH
Confidence 3433 69999999999864
No 4
>d1wj5a_ a.4.5.59 (A:) OB fold-containing protein 1, Obfc1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=8.18 E-value=37 Score=28.77 Aligned_cols=24 Identities=29% Similarity=0.324 Sum_probs=19.6
Q ss_pred hhhhhcccccccC-CCchhhhhhhh
Q 047165 418 FAEIKSNVFKRFS-KDNIHSLVYAD 441 (605)
Q Consensus 418 FvEIKsSVFKKfd-KenLFQitcsD 441 (605)
+-+=||-||+|.+ +++||.+|--|
T Consensus 86 ~Lqe~G~VFqK~~~~D~lYyVT~qD 110 (120)
T d1wj5a_ 86 LLQEKGLVFQRDSGSDKLYYVTTKD 110 (120)
T ss_dssp HHHHHTSEECSSCSSSCCBEECSSS
T ss_pred HHHHCCEEEecCCCccceEEeeccc
Confidence 4466999999998 88999987655
No 5
>d1s5qb_ a.59.1.1 (B:) Sin3A {Mouse (Mus musculus) [TaxId: 10090]}
Probab=6.77 E-value=1.2e+02 Score=23.44 Aligned_cols=25 Identities=36% Similarity=0.603 Sum_probs=18.0
Q ss_pred HHHHHHHHHHhhhcCCChhhHHHHHHHHHH
Q 047165 484 LIDIIKHSFLAKFNDIKPIAYSEFLEDLCK 513 (605)
Q Consensus 484 lVDwiKHAFItKFN~Irp~vY~~f~~~L~~ 513 (605)
.++-+|=+| -+ +|.+|++|+++|..
T Consensus 16 yl~kVK~~f----~d-~p~~Y~~FL~il~~ 40 (89)
T d1s5qb_ 16 YVNKIKNRF----QG-QPDIYKAFLEILHT 40 (89)
T ss_dssp HHHHHHHHT----TT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHH----cc-ChHHHHHHHHHHHH
Confidence 455566544 33 79999999999864
No 6
>d1qhba_ a.111.1.2 (A:) Haloperoxidase (bromoperoxidase) {Red algae (Corallina officinalis) [TaxId: 35170]}
Probab=6.04 E-value=1.5e+02 Score=30.82 Aligned_cols=40 Identities=25% Similarity=0.348 Sum_probs=33.3
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHhhhc---CCChhhHHHHHH
Q 047165 470 SFLFNALLVFVCEMLIDIIKHSFLAKFN---DIKPIAYSEFLE 509 (605)
Q Consensus 470 s~l~~~~~Vl~sEvlVDwiKHAFItKFN---~Irp~vY~~f~~ 509 (605)
.|=.+-++.+.+|+..--+||++..||| ++||++|.-=.+
T Consensus 372 ~fGgphiLslvaevA~rAlkaaw~QKw~vHrrLRPEa~ggri~ 414 (595)
T d1qhba_ 372 NFGSAHVLSLVTEVATRALKAVRYQKFNIHRRLRPEATGGLIS 414 (595)
T ss_dssp TBSHHHHHHHHHHHHHHHHHHHHHHHHHTTCBCCHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHhhHhhcCHHHHhhhHH
Confidence 3445667888999999999999999999 579999976654
No 7
>d1hfxa_ d.2.1.2 (A:) alpha-Lactalbumin {Guinea pig (Cavia porcellus) [TaxId: 10141]}
Probab=5.61 E-value=40 Score=28.39 Aligned_cols=27 Identities=33% Similarity=0.493 Sum_probs=17.4
Q ss_pred CCccchhHH--hHhhhhhhccccC-Cceee
Q 047165 3 SSSTGLFQI--YHFCYRAMGLRSS-GRKLS 29 (605)
Q Consensus 3 ~~~~~~~~~--~~~~~~~m~~r~~-~~~~s 29 (605)
|++-||||| ++.|-....-+++ .-.++
T Consensus 47 s~~yGlFQIN~~~WC~~~~~~~~~n~C~i~ 76 (123)
T d1hfxa_ 47 HKEYGLFQINDKDFCESSTTVQSRNICDIS 76 (123)
T ss_dssp EEEETTTTEETTTTCBCSSSCCCCCTTCCB
T ss_pred CccccccccccccccCCCCCCCCCCcCCCc
Confidence 457799999 6888776654333 34443
No 8
>d3cx5d2 f.23.11.1 (D:261-307) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=5.09 E-value=3.5e+02 Score=19.04 Aligned_cols=23 Identities=22% Similarity=0.232 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 047165 574 ASLKVMIGMGLQRHATWYVKRCQ 596 (605)
Q Consensus 574 v~lKlllg~~Ll~~A~~~v~~~~ 596 (605)
.++|.++.+.++-.-+.|++|.+
T Consensus 9 mg~K~~~i~s~l~~~~~y~KR~k 31 (47)
T d3cx5d2 9 LGLKTVIILSSLYLLSIWVKKFK 31 (47)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 45666666666666667777653
No 9
>d2i9ca1 a.118.1.25 (A:3-123) Hypothetical protein RPA1889 {Rhodopseudomonas palustris [TaxId: 1076]}
Probab=4.37 E-value=2.4e+02 Score=23.44 Aligned_cols=21 Identities=19% Similarity=0.294 Sum_probs=17.3
Q ss_pred CCchhhhhhhhhHHHHHHHHH
Q 047165 431 KDNIHSLVYADSIERFHISAF 451 (605)
Q Consensus 431 KenLFQitcsDivERFqL~l~ 451 (605)
|.+|-+++..|++|||.=...
T Consensus 1 ~~~l~~~~~~~Lv~~F~~~~i 21 (121)
T d2i9ca1 1 KLDLHQMTTQDLVALFAKVTV 21 (121)
T ss_dssp CCCCTTSCHHHHHHHHHHHHH
T ss_pred CccHHHccHHHHHHHHHHHHH
Confidence 568899999999999975543
No 10
>d1n1qa_ a.25.1.1 (A:) Dodecameric ferritin homolog {Bacillus brevis, Dps [TaxId: 1393]}
Probab=4.22 E-value=1.8e+02 Score=23.41 Aligned_cols=21 Identities=19% Similarity=0.332 Sum_probs=16.6
Q ss_pred hhhhe-ecccccchhhhHHHHH
Q 047165 319 LIYHM-IRGQGTIKLYVVYNVL 339 (605)
Q Consensus 319 ~iYH~-IRgQs~IKLYVifNmL 339 (605)
+-||| ++|..+.-|.-+|.-+
T Consensus 28 ~~~HWnv~G~~F~~lH~~~ee~ 49 (149)
T d1n1qa_ 28 HNFHWNVNGPNFFTLHEKFEEL 49 (149)
T ss_dssp HHHHHHCCSTTHHHHHHHHHHH
T ss_pred hhhhhceeCCCHHHHHHHHHHH
Confidence 66888 9999998888776544
Done!