BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047166
(249 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1UMZ|A Chain A, Xyloglucan Endotransglycosylase In Complex With The
Xyloglucan Nonasaccharide Xllg.
pdb|1UMZ|B Chain B, Xyloglucan Endotransglycosylase In Complex With The
Xyloglucan Nonasaccharide Xllg.
pdb|1UN1|A Chain A, Xyloglucan Endotransglycosylase Native Structure.
pdb|1UN1|B Chain B, Xyloglucan Endotransglycosylase Native Structure
Length = 278
Score = 291 bits (746), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 145/257 (56%), Positives = 174/257 (67%), Gaps = 18/257 (7%)
Query: 7 FNEEFDITWGDGRGKIFNNGQLLTLNLDRYSGSGFQSKKQHLFGKIDMQLKLVPRNSAGT 66
F + TW K FN G + L+LD+Y+G+GFQSK +LFG MQ+KLVP +SAGT
Sbjct: 17 FGRNYVPTWAFDHIKYFNGGNEIQLHLDKYTGTGFQSKGSYLFGHFSMQMKLVPGDSAGT 76
Query: 67 VTAYYLRSQGPTWDEIDFEFLGNLSGHPYTVHTNVYSQGKGDREQQFHLWFDPAVNFHTY 126
VTA+YL SQ DEIDFEFLGN +G PY + TNV++ GKGDREQ+ +LWFDP FH Y
Sbjct: 77 VTAFYLSSQNSEHDEIDFEFLGNRTGQPYILQTNVFTGGKGDREQRIYLWFDPTKEFHYY 136
Query: 127 SVLWNPQRIVFSVDGIPIREFKNLEAIGVPFPKNQPMRIYSSLWNADDWATRGGLIKTDW 186
SVLWN IVF VD +PIR FKN + +GV FP NQPM+IYSSLWNADDWATRGGL KTDW
Sbjct: 137 SVLWNMYMIVFLVDDVPIRVFKNCKDLGVKFPFNQPMKIYSSLWNADDWATRGGLEKTDW 196
Query: 187 SQAPFTASYRNFKVDGSRAWL-----------------LQQMDSTNQRRLYWVRKNHMIY 229
S+APF ASYR+F +DG A + Q +D+ RRL WVR+ + IY
Sbjct: 197 SKAPFIASYRSFHIDGCEASVEAKFCATQGARWWDQKEFQDLDAFQYRRLSWVRQKYTIY 256
Query: 230 NYCTDTKRFPQGFPKEC 246
NYCTD R+P P EC
Sbjct: 257 NYCTDRSRYP-SMPPEC 272
>pdb|2VH9|A Chain A, Crystal Structure Of Nxg1-Deltayniig In Complex With Xllg,
A Xyloglucan Derived Oligosaccharide
pdb|2VH9|B Chain B, Crystal Structure Of Nxg1-Deltayniig In Complex With Xllg,
A Xyloglucan Derived Oligosaccharide
Length = 290
Score = 166 bits (419), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 88/250 (35%), Positives = 132/250 (52%), Gaps = 19/250 (7%)
Query: 2 VSAGNFNEEFDITWGDGRGKIFNNGQLLTLNLDRYSGSGFQSKKQHLFGKIDMQLKLVPR 61
+++ F++ + WG ++ + G L T+ LD SGSGF+S ++ G +KL
Sbjct: 38 ITSLGFDQGYTNLWGPQHQRV-DQGSL-TIWLDSTSGSGFKSINRYRSGYFGANIKLQSG 95
Query: 62 NSAGTVTAYYLRSQGP---TWDEIDFEFLGNLSGHPYTVHTNVYSQGKGDREQQFHLWFD 118
+AG +T++YL + DEID EFLG + G PYT+ TNV+ +G GDRE + HLWFD
Sbjct: 96 YTAGVITSFYLSNNQDYPGKHDEIDIEFLGTIPGKPYTLQTNVFIEGSGDREMRIHLWFD 155
Query: 119 PAVNFHTYSVLWNPQRIVFSVDGIPIREFKNLEAIGVPFPKNQPMRIYSSLWNADDWATR 178
P ++H Y++ W P I+F VD +PIR + P +P+ +Y S+W+A WAT
Sbjct: 156 PTQDYHNYAIYWTPSEIIFFVDDVPIRRYPRKSDATFPL---RPLWVYGSVWDASSWATE 212
Query: 179 GGLIKTDWSQAPFTASYRNFKVDGSRAWLLQ-----------QMDSTNQRRLYWVRKNHM 227
G K D+ PF Y +FK+ Q+ + WV+KN+M
Sbjct: 213 NGKYKADYRYQPFVGKYEDFKLGSCTVEAASSCNPASVSPYGQLSQQQVAAMEWVQKNYM 272
Query: 228 IYNYCTDTKR 237
+YNYC D R
Sbjct: 273 VYNYCDDPTR 282
>pdb|2UWB|A Chain A, Crystal Structure Of The Nasturtium Seedling Mutant
Xyloglucanase Isoform Nxg1-Delta-Yniig
pdb|2UWB|B Chain B, Crystal Structure Of The Nasturtium Seedling Mutant
Xyloglucanase Isoform Nxg1-Delta-Yniig
Length = 267
Score = 165 bits (418), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 87/250 (34%), Positives = 130/250 (52%), Gaps = 19/250 (7%)
Query: 2 VSAGNFNEEFDITWGDGRGKIFNNGQLLTLNLDRYSGSGFQSKKQHLFGKIDMQLKLVPR 61
+++ F++ + WG ++ LT+ LD SGSGF+S ++ G +KL
Sbjct: 15 ITSLGFDQGYTNLWGPQHQRVDQGS--LTIWLDSTSGSGFKSINRYRSGYFGANIKLQSG 72
Query: 62 NSAGTVTAYYLRSQGP---TWDEIDFEFLGNLSGHPYTVHTNVYSQGKGDREQQFHLWFD 118
+AG +T++YL + DEID EFLG + G PYT+ TNV+ +G GDRE + HLWFD
Sbjct: 73 YTAGVITSFYLSNNQDYPGKHDEIDIEFLGTIPGKPYTLQTNVFIEGSGDREMRIHLWFD 132
Query: 119 PAVNFHTYSVLWNPQRIVFSVDGIPIREFKNLEAIGVPFPKNQPMRIYSSLWNADDWATR 178
P ++H Y++ W P I+F VD +PIR + P +P+ +Y S+W+A WAT
Sbjct: 133 PTQDYHNYAIYWTPSEIIFFVDDVPIRRYPRKSDATFPL---RPLWVYGSVWDASSWATE 189
Query: 179 GGLIKTDWSQAPFTASYRNFKVDGSRAWLLQ-----------QMDSTNQRRLYWVRKNHM 227
G K D+ PF Y +FK+ Q+ + WV+KN+M
Sbjct: 190 NGKYKADYRYQPFVGKYEDFKLGSCTVEAASSCNPASVSPYGQLSQQQVAAMEWVQKNYM 249
Query: 228 IYNYCTDTKR 237
+YNYC D R
Sbjct: 250 VYNYCDDPTR 259
>pdb|2UWC|A Chain A, Crystal Structure Of Nasturtium Xyloglucan Hydrolase
Isoform Nxg2
pdb|2UWC|B Chain B, Crystal Structure Of Nasturtium Xyloglucan Hydrolase
Isoform Nxg2
Length = 271
Score = 160 bits (404), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 88/255 (34%), Positives = 130/255 (50%), Gaps = 24/255 (9%)
Query: 2 VSAGNFNEEFDITWGDGRGKIFNNGQLLTLNLDRYSGSGFQSKKQHLFGKIDMQLKLVPR 61
+++ F++ + WG ++ LT+ LD SGSGF+S ++ G +KL
Sbjct: 14 ITSLGFDQGYTNLWGPQHQRVDQGS--LTIWLDSTSGSGFKSINRYRSGYFGANIKLQSG 71
Query: 62 NSAGTVTAYYLRSQGP---TWDEIDFEFLGNLSGHPYTVHTNVYSQGKGD-----REQQF 113
+AG +T++YL + DEID EFLG + G PYT+ TNV+ +G GD RE +
Sbjct: 72 YTAGVITSFYLSNNQDYPGKHDEIDIEFLGTIPGKPYTLQTNVFIEGSGDYNIIGRELRI 131
Query: 114 HLWFDPAVNFHTYSVLWNPQRIVFSVDGIPIREFKNLEAIGVPFPKNQPMRIYSSLWNAD 173
HLWFDP ++H Y++ W P I+F VD +PIR + P +PM +Y S+W+A
Sbjct: 132 HLWFDPTQDYHNYAIYWTPSEIIFFVDDVPIRRYPRKSDATFPL---RPMWVYGSVWDAS 188
Query: 174 DWATRGGLIKTDWSQAPFTASYRNFKVDGSRAWLLQ-----------QMDSTNQRRLYWV 222
WAT G K D+ PF Y +FK+ Q+ + WV
Sbjct: 189 SWATENGKYKADYRYQPFVGKYEDFKLGSCTVEAASSCNPASVSPYGQLSQQQVAAMEWV 248
Query: 223 RKNHMIYNYCTDTKR 237
+KN+M+YNYC D R
Sbjct: 249 QKNYMVYNYCDDPTR 263
>pdb|2UWA|A Chain A, Crystal Structure Of The Nasturtium Seedling Xyloglucanase
Isoform Nxg1
pdb|2UWA|B Chain B, Crystal Structure Of The Nasturtium Seedling Xyloglucanase
Isoform Nxg1
pdb|2UWA|C Chain C, Crystal Structure Of The Nasturtium Seedling Xyloglucanase
Isoform Nxg1
Length = 274
Score = 159 bits (403), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 87/255 (34%), Positives = 130/255 (50%), Gaps = 24/255 (9%)
Query: 2 VSAGNFNEEFDITWGDGRGKIFNNGQLLTLNLDRYSGSGFQSKKQHLFGKIDMQLKLVPR 61
+++ F++ + WG ++ LT+ LD SGSGF+S ++ G +KL
Sbjct: 17 ITSLGFDQGYTNLWGPQHQRVDQGS--LTIWLDSTSGSGFKSINRYRSGYFGANIKLQSG 74
Query: 62 NSAGTVTAYYLRSQGP---TWDEIDFEFLGNLSGHPYTVHTNVYSQGKGD-----REQQF 113
+AG +T++YL + DEID EFLG + G PYT+ TNV+ +G GD RE +
Sbjct: 75 YTAGVITSFYLSNNQDYPGKHDEIDIEFLGTIPGKPYTLQTNVFIEGSGDYNIIGREMRI 134
Query: 114 HLWFDPAVNFHTYSVLWNPQRIVFSVDGIPIREFKNLEAIGVPFPKNQPMRIYSSLWNAD 173
HLWFDP ++H Y++ W P I+F VD +PIR + P +P+ +Y S+W+A
Sbjct: 135 HLWFDPTQDYHNYAIYWTPSEIIFFVDDVPIRRYPRKSDATFPL---RPLWVYGSVWDAS 191
Query: 174 DWATRGGLIKTDWSQAPFTASYRNFKVDGSRAWLLQ-----------QMDSTNQRRLYWV 222
WAT G K D+ PF Y +FK+ Q+ + WV
Sbjct: 192 SWATENGKYKADYRYQPFVGKYEDFKLGSCTVEAASSCNPASVSPYGQLSQQQVAAMEWV 251
Query: 223 RKNHMIYNYCTDTKR 237
+KN+M+YNYC D R
Sbjct: 252 QKNYMVYNYCDDPTR 266
>pdb|3D6E|A Chain A, Crystal Structure Of The Engineered 1,3-1,4-Beta-Glucanase
Protein From Bacillus Licheniformis
pdb|3D6E|B Chain B, Crystal Structure Of The Engineered 1,3-1,4-Beta-Glucanase
Protein From Bacillus Licheniformis
Length = 201
Score = 78.6 bits (192), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 54/155 (34%), Positives = 82/155 (52%), Gaps = 20/155 (12%)
Query: 28 LLTLNLDRYSGSGFQSKKQHLFGKIDMQLKLVPRNSAGTVTAYYLRSQGPT----WDEID 83
L + + +++ G G QS + + +G ++ +K P + G V+A+Y S GPT WDEID
Sbjct: 38 LTSPSYNKFDGGGNQSVQTYGYGLYEVNMK--PAKNVGIVSAFY-TSTGPTDGTPWDEID 94
Query: 84 FEFLGNLSGHPYTVHTNVYSQGKGDREQQFHLWFDPAVNFHTYSVLWNPQRIVFSVDGIP 143
EFLG + V N Y+ G G+ E+ +L FD A ++HTY+ W P I + VDG
Sbjct: 95 IEFLGKDTTK---VQFNYYTNGVGNHEKIVNLGFDAANSYHTYAFDWQPNSIKWYVDG-- 149
Query: 144 IREFKNLEAIGVPFPKNQPMRIYSSLW---NADDW 175
+ K+ +P P +IY SLW D+W
Sbjct: 150 --QLKHTATTQIP---QTPGKIYMSLWAGAGVDEW 179
>pdb|1MAC|A Chain A, Crystal Structure And Site-Directed Mutagenesis Of
Bacillus Macerans Endo-1,3-1,4-Beta-Glucanase
pdb|1MAC|B Chain B, Crystal Structure And Site-Directed Mutagenesis Of
Bacillus Macerans Endo-1,3-1,4-Beta-Glucanase
Length = 212
Score = 70.5 bits (171), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 84/175 (48%), Gaps = 22/175 (12%)
Query: 11 FDITWGDGRGKIFNNGQL----LTLNLDRYSGSGFQSKKQHLFGKIDMQLKLVPRNSAGT 66
F+ TW N+G+L + +++ + ++S + +G ++ +K P + G
Sbjct: 28 FNCTWRANNVNFTNDGKLKLGLTSSAYNKFDCAEYRSTNIYGYGLYEVSMK--PAKNTGI 85
Query: 67 VTAYYLRS---QGPTWDEIDFEFLGNLSGHPYTVHTNVYSQGKGDREQQFHLWFDPAVNF 123
V++++ + G WDEID EFLG + V N Y+ G G E+ L FD + F
Sbjct: 86 VSSFFTYTGPAHGTQWDEIDIEFLGKDTTK---VQFNYYTNGVGGHEKVISLGFDASKGF 142
Query: 124 HTYSVLWNPQRIVFSVDGIPIREFKNLEAIGVPFPKNQPMRIYSSLWNA---DDW 175
HTY+ W P I + VDG+ K+ +P + P +I +LWN DDW
Sbjct: 143 HTYAFDWQPGYIKWYVDGV----LKHTATANIP---STPGKIMMNLWNGTGVDDW 190
>pdb|1BYH|A Chain A, Molecular And Active-Site Structure Of A Bacillus
(1-3,1-4)- Beta-Glucanase
pdb|1GLH|A Chain A, Cation Binding To A Bacillus (1,3-1,4)-Beta-Glucanase.
Geometry, Affinity And Effect On Protein Stability
pdb|2AYH|A Chain A, Crystal And Molecular Structure At 1.6 Angstroms
Resolution Of The Hybrid Bacillus
Endo-1,3-1,4-Beta-D-Glucan 4- Glucanohydrolase H(A16-M)
Length = 214
Score = 70.5 bits (171), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 84/175 (48%), Gaps = 22/175 (12%)
Query: 11 FDITWGDGRGKIFNNGQL----LTLNLDRYSGSGFQSKKQHLFGKIDMQLKLVPRNSAGT 66
F+ TW N+G+L + +++ + ++S + +G ++ +K P + G
Sbjct: 30 FNCTWRANNVNFTNDGKLKLGLTSSAYNKFDCAEYRSTNIYGYGLYEVSMK--PAKNTGI 87
Query: 67 VTAYYLRS---QGPTWDEIDFEFLGNLSGHPYTVHTNVYSQGKGDREQQFHLWFDPAVNF 123
V++++ + G WDEID EFLG + V N Y+ G G E+ L FD + F
Sbjct: 88 VSSFFTYTGPAHGTQWDEIDIEFLGKDTTK---VQFNYYTNGVGGHEKVISLGFDASKGF 144
Query: 124 HTYSVLWNPQRIVFSVDGIPIREFKNLEAIGVPFPKNQPMRIYSSLWNA---DDW 175
HTY+ W P I + VDG+ K+ +P + P +I +LWN DDW
Sbjct: 145 HTYAFDWQPGYIKWYVDGV----LKHTATANIP---STPGKIMMNLWNGTGVDDW 192
>pdb|1CPM|A Chain A, Native-Like In Vivo Folding Of A Circularly Permuted
Jellyroll Protein Shown By Crystal Structure Analysis
Length = 214
Score = 68.6 bits (166), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 69/140 (49%), Gaps = 16/140 (11%)
Query: 42 QSKKQHLFGKIDMQLKLVPRNSAGTVTAYYLRS---QGPTWDEIDFEFLGNLSGHPYTVH 98
+ + +++G ++ + P + G V++++ + G WDEID EFLG + V
Sbjct: 5 EYRSTNIYGYGLYEVSMKPAKNTGIVSSFFTYTGPAHGTQWDEIDIEFLGKDTTK---VQ 61
Query: 99 TNVYSQGKGDREQQFHLWFDPAVNFHTYSVLWNPQRIVFSVDGIPIREFKNLEAIGVPFP 158
N Y+ G G E+ L FD + FHTY+ W P I + VDG+ K+ +P
Sbjct: 62 FNYYTNGVGGHEKVISLGFDASKGFHTYAFDWQPGYIKWYVDGV----LKHTATANIP-- 115
Query: 159 KNQPMRIYSSLWNA---DDW 175
+ P +I +LWN DDW
Sbjct: 116 -STPGKIMMNLWNGTGVDDW 134
>pdb|1CPN|A Chain A, Native-Like In Vivo Folding Of A Circularly Permuted
Jellyroll Protein Shown By Crystal Structure Analysis
Length = 208
Score = 68.2 bits (165), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 69/140 (49%), Gaps = 16/140 (11%)
Query: 42 QSKKQHLFGKIDMQLKLVPRNSAGTVTAYYLRS---QGPTWDEIDFEFLGNLSGHPYTVH 98
+ + +++G ++ + P + G V++++ + G WDEID EFLG + V
Sbjct: 5 EYRSTNIYGYGLYEVSMKPAKNTGIVSSFFTYTGPAHGTQWDEIDIEFLGKDTTK---VQ 61
Query: 99 TNVYSQGKGDREQQFHLWFDPAVNFHTYSVLWNPQRIVFSVDGIPIREFKNLEAIGVPFP 158
N Y+ G G E+ L FD + FHTY+ W P I + VDG+ K+ +P
Sbjct: 62 FNYYTNGVGGHEKVISLGFDASKGFHTYAFDWQPGYIKWYVDGV----LKHTATANIP-- 115
Query: 159 KNQPMRIYSSLWNA---DDW 175
+ P +I +LWN DDW
Sbjct: 116 -STPGKIMMNLWNGTGVDDW 134
>pdb|1AXK|A Chain A, Engineered Bacillus Bifunctional Enzyme Gluxyn-1
pdb|1AXK|B Chain B, Engineered Bacillus Bifunctional Enzyme Gluxyn-1
Length = 394
Score = 68.2 bits (165), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 69/140 (49%), Gaps = 16/140 (11%)
Query: 42 QSKKQHLFGKIDMQLKLVPRNSAGTVTAYYLRS---QGPTWDEIDFEFLGNLSGHPYTVH 98
+ + +++G ++ + P + G V++++ + G WDEID EFLG + V
Sbjct: 5 EYRSTNIYGYGLYEVSMKPAKNTGIVSSFFTYTGPAHGTQWDEIDIEFLGKDTTK---VQ 61
Query: 99 TNVYSQGKGDREQQFHLWFDPAVNFHTYSVLWNPQRIVFSVDGIPIREFKNLEAIGVPFP 158
N Y+ G G E+ L FD + FHTY+ W P I + VDG+ K+ +P
Sbjct: 62 FNYYTNGVGGHEKVISLGFDASKGFHTYAFDWQPGYIKWYVDGV----LKHTATANIP-- 115
Query: 159 KNQPMRIYSSLWNA---DDW 175
+ P +I +LWN DDW
Sbjct: 116 -STPGKIMMNLWNGTGVDDW 134
>pdb|1U0A|A Chain A, Crystal Structure Of The Engineered
Beta-1,3-1,4-Endoglucanase H(A16- M) In Complex With
Beta-Glucan Tetrasaccharide
pdb|1U0A|B Chain B, Crystal Structure Of The Engineered
Beta-1,3-1,4-Endoglucanase H(A16- M) In Complex With
Beta-Glucan Tetrasaccharide
pdb|1U0A|C Chain C, Crystal Structure Of The Engineered
Beta-1,3-1,4-Endoglucanase H(A16- M) In Complex With
Beta-Glucan Tetrasaccharide
pdb|1U0A|D Chain D, Crystal Structure Of The Engineered
Beta-1,3-1,4-Endoglucanase H(A16- M) In Complex With
Beta-Glucan Tetrasaccharide
Length = 214
Score = 67.8 bits (164), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 84/175 (48%), Gaps = 22/175 (12%)
Query: 11 FDITWGDGRGKIFNNGQL----LTLNLDRYSGSGFQSKKQHLFGKIDMQLKLVPRNSAGT 66
F+ TW N+G+L + +++ + ++S + +G ++ +K P + G
Sbjct: 30 FNCTWRANNVNFTNDGKLKLGLTSSAYNKFDCAEYRSTNIYGYGLYEVSMK--PAKNTGI 87
Query: 67 VTAYYLRS---QGPTWDEIDFEFLGNLSGHPYTVHTNVYSQGKGDREQQFHLWFDPAVNF 123
V++++ + G WD+ID +FLG + V N Y+ G G E+ L FD + F
Sbjct: 88 VSSFFTYTGPAHGTQWDQIDIQFLGKDTTK---VQFNYYTNGVGGHEKVISLGFDASKGF 144
Query: 124 HTYSVLWNPQRIVFSVDGIPIREFKNLEAIGVPFPKNQPMRIYSSLWNA---DDW 175
HTY+ W P I + VDG+ K+ +P + P +I +LWN DDW
Sbjct: 145 HTYAFDWQPGYIKWYVDGV----LKHTATANIP---STPGKIMMNLWNGTGVDDW 192
>pdb|1GBG|A Chain A, Bacillus Licheniformis Beta-Glucanase
Length = 214
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/141 (31%), Positives = 72/141 (51%), Gaps = 18/141 (12%)
Query: 42 QSKKQHLFGKIDMQLKLVPRNSAGTVTAYYLRSQGPT----WDEIDFEFLGNLSGHPYTV 97
+++ +G ++ + P + G V++++ + GPT WDEID EFLG + V
Sbjct: 63 ENRSVQTYGYGLYEVNMKPAKNVGIVSSFFTYT-GPTDGTPWDEIDIEFLGKDTTK---V 118
Query: 98 HTNVYSQGKGDREQQFHLWFDPAVNFHTYSVLWNPQRIVFSVDGIPIREFKNLEAIGVPF 157
N Y+ G G+ E+ +L FD A ++HTY+ W P I + VDG + K+ +P
Sbjct: 119 QFNYYTNGVGNHEKIVNLGFDAANSYHTYAFDWQPNSIKWYVDG----QLKHTATTQIP- 173
Query: 158 PKNQPMRIYSSLWNA---DDW 175
P +I +LWN D+W
Sbjct: 174 --QTPGKIMMNLWNGAGVDEW 192
>pdb|3O5S|A Chain A, Crystal Structure Of The Endo-Beta-1,3-1,4 Glucanase From
Bacillus Subtilis (Strain 168)
Length = 238
Score = 65.5 bits (158), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 44/141 (31%), Positives = 71/141 (50%), Gaps = 18/141 (12%)
Query: 42 QSKKQHLFGKIDMQLKLVPRNSAGTVTAYYLRSQGPT----WDEIDFEFLGNLSGHPYTV 97
+++ +G ++++ P + G V++++ + GPT WDEID EFLG + V
Sbjct: 87 ENRSVQTYGYGLYEVRMKPAKNTGIVSSFFTYT-GPTDGTPWDEIDIEFLGKDTTK---V 142
Query: 98 HTNVYSQGKGDREQQFHLWFDPAVNFHTYSVLWNPQRIVFSVDGIPIREFKNLEAIGVPF 157
N Y+ G G+ E+ L FD A +HTY+ W P I + VDG + K+ +P
Sbjct: 143 QFNYYTNGAGNHEKIVDLGFDAANAYHTYAFDWQPNSIKWYVDG----QLKHTATNQIP- 197
Query: 158 PKNQPMRIYSSLWNA---DDW 175
P +I +LWN D+W
Sbjct: 198 --TTPGKIMMNLWNGTGVDEW 216
>pdb|1AJK|A Chain A, Circularly Permuted (1-3,1-4)-Beta-D-Glucan 4-
Glucanohydrolase Cpa16m-84
pdb|1AJK|B Chain B, Circularly Permuted (1-3,1-4)-Beta-D-Glucan 4-
Glucanohydrolase Cpa16m-84
Length = 214
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 59/119 (49%), Gaps = 16/119 (13%)
Query: 63 SAGTVTAYYLRS---QGPTWDEIDFEFLGNLSGHPYTVHTNVYSQGKGDREQQFHLWFDP 119
+ G V++++ + G WDEID EFLG + V N Y+ G G E+ L FD
Sbjct: 1 NTGIVSSFFTYTGPAHGTQWDEIDIEFLGKDTTK---VQFNYYTNGVGGHEKVISLGFDA 57
Query: 120 AVNFHTYSVLWNPQRIVFSVDGIPIREFKNLEAIGVPFPKNQPMRIYSSLWNA---DDW 175
+ FHTY+ W P I + VDG+ K+ +P + P +I +LWN DDW
Sbjct: 58 SKGFHTYAFDWQPGYIKWYVDGV----LKHTATANIP---STPGKIMMNLWNGTGVDDW 109
>pdb|3I4I|A Chain A, Crystal Structure Of A Prokaryotic Beta-1,3-1,4-Glucanase
(Lichenase) Derived From A Mouse Hindgut Metagenome
pdb|3I4I|B Chain B, Crystal Structure Of A Prokaryotic Beta-1,3-1,4-Glucanase
(Lichenase) Derived From A Mouse Hindgut Metagenome
Length = 234
Score = 61.6 bits (148), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 74/146 (50%), Gaps = 18/146 (12%)
Query: 36 YSGSGFQSKKQHLFGKIDMQLKLVPRNSAGTVTAYYLRS---QGPTWDEIDFEFLGNLSG 92
Y+G+ ++++ + FG Q+++ P + G V++++ + G WDEID EFLG +
Sbjct: 79 YAGAEYRTRDK--FGYGLYQVRMKPAKNPGIVSSFFTYTGPVHGTPWDEIDIEFLGKDTT 136
Query: 93 HPYTVHTNVYSQGKGDREQQFHLWFDPAVNFHTYSVLWNPQRIVFSVDGIPIREFKNLEA 152
V N Y+ G+ E + L FD + +FH Y+ W P I + VDG + ++ +
Sbjct: 137 ---KVQFNYYTNSAGNHEYIYDLRFDASEDFHIYAFNWQPNYIAWLVDGEEV--YRAYDD 191
Query: 153 IGVPFPKNQPMRIYSSLW---NADDW 175
I V P +I ++W D+W
Sbjct: 192 IPV-----HPGKIMLNIWPGIGVDEW 212
>pdb|3AXD|A Chain A, The Truncated Fibrobacter Succinogenes
1,3-1,4-Beta-D-Glucanase V18yW203Y IN APO-Form
pdb|3AXD|B Chain B, The Truncated Fibrobacter Succinogenes
1,3-1,4-Beta-D-Glucanase V18yW203Y IN APO-Form
pdb|3AXE|A Chain A, The Truncated Fibrobacter Succinogenes
1,3-1,4-Beta-D-Glucanase V18yW203Y IN COMPLEX WITH
CELLOTETRAOSE (CELLOBIOSE DENSITY WAS Observed)
Length = 249
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 65/125 (52%), Gaps = 14/125 (11%)
Query: 31 LNLDRYSGSGFQSKKQHLFGKIDMQLKLVPRNSAGTVTAYYLRSQGPT------WDEIDF 84
+++ +SG+ + +++ +GK + ++K+ ++GTV++ +L G W E+D
Sbjct: 2 VSMKDFSGAELYTLEEYQYGKFEARMKMAA--ASGTVSSMFLYQNGSEIADGRPWVEVDI 59
Query: 85 EFLGNLSGHPYTVHTNVYSQGKG-DREQQFHLWFDPAVN--FHTYSVLWNPQRIVFSVDG 141
E LG P + +N+ + G + + H PA + FHTY + W P + ++VDG
Sbjct: 60 EVLGK---SPGSFQSNIITGKAGAQKTSEKHHAVSPAADQAFHTYGLEWTPNYVRWTVDG 116
Query: 142 IPIRE 146
+R+
Sbjct: 117 QEVRK 121
>pdb|2R49|A Chain A, Mutational And Structural Studies Of E85i Reveal The
Flexible Loops Of Fibrobacter Succinogenes
1,3-1,4-beta-d- Glucanaseglucanase
Length = 241
Score = 50.8 bits (120), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 62/120 (51%), Gaps = 14/120 (11%)
Query: 36 YSGSGFQSKKQHLFGKIDMQLKLVPRNSAGTVTAYYLRSQGPT------WDEIDFEFLGN 89
+SG+ + ++ +GK + ++K+ ++GTV++ +L G W E+D E LG
Sbjct: 5 FSGAELYTLEEVQYGKFEARMKMAA--ASGTVSSMFLYQNGSEIADGRPWVEVDIEVLGK 62
Query: 90 LSGHPYTVHTNVYSQGKGDREQQF-HLWFDPAVN--FHTYSVLWNPQRIVFSVDGIPIRE 146
+P + +N+ + G ++ H PA + FHTY + W P + ++VDG +R+
Sbjct: 63 ---NPGSFQSNIITGKAGAQKTSIKHHAVSPAADQAFHTYGLEWTPNYVRWTVDGQEVRK 119
>pdb|3H0O|A Chain A, The Importance Of Ch-Pi Stacking Interactions Between
Carbohydrate And Aromatic Residues In Truncated
Fibrobacter Succinogenes 1,3-1,4-Beta-D-Glucanase
Length = 240
Score = 50.8 bits (120), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 62/120 (51%), Gaps = 14/120 (11%)
Query: 36 YSGSGFQSKKQHLFGKIDMQLKLVPRNSAGTVTAYYLRSQGPT------WDEIDFEFLGN 89
+SG+ + ++ +GK + ++K+ ++GTV++ +L G W E+D E LG
Sbjct: 4 FSGAELYTLEEVQYGKFEARMKMAA--ASGTVSSMFLYQNGSEIADGRPWVEVDIEVLGK 61
Query: 90 LSGHPYTVHTNVYSQGKG-DREQQFHLWFDPAVN--FHTYSVLWNPQRIVFSVDGIPIRE 146
+P + +N+ + G + + H PA + FHTY + W P + ++VDG +R+
Sbjct: 62 ---NPGSFQSNIITGKAGAQKTSEKHHAVSPAADQAFHTYGLEWTPNYVRWTVDGQEVRK 118
>pdb|3HR9|A Chain A, The Truncated Fibrobacter Succinogenes 1,3-1,4-Beta-D-
Glucanase F40i Mutant
Length = 241
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 61/120 (50%), Gaps = 14/120 (11%)
Query: 36 YSGSGFQSKKQHLFGKIDMQLKLVPRNSAGTVTAYYLRSQGPT------WDEIDFEFLGN 89
+SG+ + ++ +GK + ++K+ ++GTV++ L G W E+D E LG
Sbjct: 5 FSGAELYTLEEVQYGKFEARMKMAA--ASGTVSSMILYQNGSEIADGRPWVEVDIEVLGK 62
Query: 90 LSGHPYTVHTNVYSQGKG-DREQQFHLWFDPAVN--FHTYSVLWNPQRIVFSVDGIPIRE 146
+P + +N+ + G + + H PA + FHTY + W P + ++VDG +R+
Sbjct: 63 ---NPGSFQSNIITGKAGAQKTSEKHHAVSPAADQAFHTYGLEWTPNYVRWTVDGQEVRK 119
>pdb|2HYK|A Chain A, The Crystal Structure Of An Endo-Beta-1,3-Glucanase From
Alkaliphilic Nocardiopsis Sp.Strain F96
Length = 245
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 68/143 (47%), Gaps = 11/143 (7%)
Query: 42 QSKKQHLFGKIDMQLKLVPRNSAGTVTAYYLRSQG----PTWDEIDFEFLGNLSGHPYTV 97
Q+K Q +G+++ ++ +PR G A+++ P D + + + N+ P+ V
Sbjct: 80 QNKVQPQYGRVEASIQ-IPRGQ-GIWPAFWMLGADFPNTPWPDSGEIDIMENIGREPHLV 137
Query: 98 HTNVYSQGKGDREQQFHLWFDP-----AVNFHTYSVLWNPQRIVFSVDGIPIREFKNLEA 152
H +++ G E + P A FHT++V W P I +SVDG+ + + + +
Sbjct: 138 HGSLHGPGYFGGEPLTGSYMHPQGWSFADTFHTFAVDWRPGSITWSVDGVAYQTYTSADT 197
Query: 153 IGVPFPKNQPMRIYSSLWNADDW 175
G P+ +QP + ++ DW
Sbjct: 198 RGNPWVFDQPFFMILNVAVGGDW 220
>pdb|1MVE|A Chain A, Crystal Structure Of A Natural Circularly-Permutated
Jellyroll Protein: 1,3-1,4-Beta-D-Glucanase From
Fibrobacter Succinogenes
Length = 243
Score = 47.8 bits (112), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 60/120 (50%), Gaps = 14/120 (11%)
Query: 36 YSGSGFQSKKQHLFGKIDMQLKLVPRNSAGTVTAYYLRSQGPT------WDEIDFEFLGN 89
+SG+ + ++ +GK + + K ++GTV++ +L G W E+D E LG
Sbjct: 7 FSGAELYTLEEVQYGKFEARXKXAA--ASGTVSSXFLYQNGSEIADGRPWVEVDIEVLGK 64
Query: 90 LSGHPYTVHTNVYSQGKG-DREQQFHLWFDPAVN--FHTYSVLWNPQRIVFSVDGIPIRE 146
+P + +N+ + G + + H PA + FHTY + W P + ++VDG +R+
Sbjct: 65 ---NPGSFQSNIITGKAGAQKTSEKHHAVSPAADQAFHTYGLEWTPNYVRWTVDGQEVRK 121
>pdb|1ZM1|A Chain A, Crystal Structures Of Complex F. Succinogenes
1,3-1,4-Beta- D-Glucanase And Beta-1,3-1,4-Cellotriose
pdb|1ZM1|B Chain B, Crystal Structures Of Complex F. Succinogenes
1,3-1,4-Beta- D-Glucanase And Beta-1,3-1,4-Cellotriose
Length = 241
Score = 47.8 bits (112), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 60/120 (50%), Gaps = 14/120 (11%)
Query: 36 YSGSGFQSKKQHLFGKIDMQLKLVPRNSAGTVTAYYLRSQGPT------WDEIDFEFLGN 89
+SG+ + ++ +GK + + K ++GTV++ +L G W E+D E LG
Sbjct: 4 FSGAELYTLEEVQYGKFEARXKXAA--ASGTVSSXFLYQNGSEIADGRPWVEVDIEVLGK 61
Query: 90 LSGHPYTVHTNVYSQGKG-DREQQFHLWFDPAVN--FHTYSVLWNPQRIVFSVDGIPIRE 146
+P + +N+ + G + + H PA + FHTY + W P + ++VDG +R+
Sbjct: 62 ---NPGSFQSNIITGKAGAQKTSEKHHAVSPAADQAFHTYGLEWTPNYVRWTVDGQEVRK 118
>pdb|1AJO|A Chain A, Circularly Permuted (1-3,1-4)-Beta-D-Glucan 4-
Glucanohydrolase Cpa16m-127
pdb|1AJO|B Chain B, Circularly Permuted (1-3,1-4)-Beta-D-Glucan 4-
Glucanohydrolase Cpa16m-127
Length = 214
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 35/72 (48%), Gaps = 10/72 (13%)
Query: 107 GDREQQFHLWFDPAVNFHTYSVLWNPQRIVFSVDGIPIREFKNLEAIGVPFPKNQPMRIY 166
G E+ L FD + FHTY+ W P I + VDG+ K+ +P + P +I
Sbjct: 2 GGHEKVISLGFDASKGFHTYAFDWQPGYIKWYVDGV----LKHTATANIP---STPGKIM 54
Query: 167 SSLWNA---DDW 175
+LWN DDW
Sbjct: 55 MNLWNGTGVDDW 66
Score = 34.7 bits (78), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 43/85 (50%), Gaps = 9/85 (10%)
Query: 11 FDITWGDGRGKIFNNGQL----LTLNLDRYSGSGFQSKKQHLFGKIDMQLKLVPRNSAGT 66
F+ TW N+G+L + +++ + ++S + +G ++ +K P + G
Sbjct: 118 FNCTWRANNVNFTNDGKLKLGLTSSAYNKFDCAEYRSTNIYGYGLYEVSMK--PAKNTGI 175
Query: 67 VTAYYLRS---QGPTWDEIDFEFLG 88
V++++ + G WDEID EFLG
Sbjct: 176 VSSFFTYTGPAHGTQWDEIDIEFLG 200
>pdb|3ATG|A Chain A, Endo-1,3-Beta-Glucanase From Cellulosimicrobium Cellulans
Length = 256
Score = 37.0 bits (84), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 51/111 (45%), Gaps = 15/111 (13%)
Query: 42 QSKKQHLFGKIDMQLKLVPRNSAGTVTAYYLRSQG------PTWDEIDFEFLGNLSGHPY 95
Q K Q +G+I+ +++ +PR G A+++ P+ EID + N+ P+
Sbjct: 76 QGKYQPQYGRIEARIQ-IPRGQ-GIWPAFWMLGGSFPGTPWPSSGEIDI--MENVGFEPH 131
Query: 96 TVHTNVYSQGKGDREQQFHLWFDP-----AVNFHTYSVLWNPQRIVFSVDG 141
VH V+ G ++ P A FHT++V W P I + VDG
Sbjct: 132 RVHGTVHGPGYSGGSGITGMYQHPQGWSFADTFHTFAVDWKPGEITWFVDG 182
>pdb|2VY0|A Chain A, The X-Ray Structure Of Endo-Beta-1,3-Glucanase From
Pyrococcus Furiosus
pdb|2VY0|B Chain B, The X-Ray Structure Of Endo-Beta-1,3-Glucanase From
Pyrococcus Furiosus
Length = 264
Score = 35.0 bits (79), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 50/108 (46%), Gaps = 13/108 (12%)
Query: 72 LRSQG-PTWDEIDF-EFLGNLSGHPYTVHTNVYSQGKGDREQQFHLWFDP------AVNF 123
+R G P EID EFLG+ P T+H V+ G + + P +F
Sbjct: 127 IREVGWPNCGEIDIMEFLGH---EPRTIHGTVHGPGYSGSKGITRAYTLPEGVPDFTEDF 183
Query: 124 HTYSVLWNPQRIVFSVDGIPIREF--KNLEAIGVPFPKNQPMRIYSSL 169
H + ++W P +I + VDG E + +EA+G + ++P I +L
Sbjct: 184 HVFGIVWYPDKIKWYVDGTFYHEVTKEQVEAMGYEWVFDKPFYIILNL 231
>pdb|1DYP|A Chain A, 1,3-Alpha-1,4-Beta-D-Galactose-4-Sulfate-3,6-Anhydro-D-
Galactose 4 Galactohydrolase
Length = 271
Score = 33.9 bits (76), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 22/38 (57%)
Query: 113 FHLWFDPAVNFHTYSVLWNPQRIVFSVDGIPIREFKNL 150
+HL FDP +FHTY V +I + VDG + E NL
Sbjct: 182 YHLPFDPRNDFHTYGVNVTKDKITWYVDGEIVGEKDNL 219
>pdb|3ILN|A Chain A, X-Ray Structure Of The Laminarinase From Rhodothermus
Marinus
pdb|3ILN|B Chain B, X-Ray Structure Of The Laminarinase From Rhodothermus
Marinus
Length = 251
Score = 31.6 bits (70), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 37/91 (40%), Gaps = 5/91 (5%)
Query: 96 TVHTNVYSQGKGDREQQFHLWFDPAVNFHTYSVLWNPQRIVFSVDG-----IPIREFKNL 150
TVHT Y+ G + +FH Y++ W P+ I + VD P N
Sbjct: 140 TVHTKAYNHLLGTQRGGSIRVPTARTDFHVYAIEWTPEEIRWFVDDSLYYRFPNERLTNP 199
Query: 151 EAIGVPFPKNQPMRIYSSLWNADDWATRGGL 181
EA +P +QP + ++ W + G+
Sbjct: 200 EADWRHWPFDQPFHLIMNIAVGGTWGGQQGV 230
>pdb|1MQB|A Chain A, Crystal Structure Of Ephrin A2 (Epha2) Receptor Protein
Kinase
pdb|1MQB|B Chain B, Crystal Structure Of Ephrin A2 (Epha2) Receptor Protein
Kinase
Length = 333
Score = 31.6 bits (70), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 30/75 (40%), Gaps = 7/75 (9%)
Query: 175 WATRGGLIKTDWSQAPFTASYRNFKVDGSRAW---LLQQMDSTNQRRLYWVRKNHMIYNY 231
+ T GG I W+ AP SYR F S W ++ T R YW NH +
Sbjct: 205 YTTSGGKIPIRWT-APEAISYRKF-TSASDVWSFGIVMWEVMTYGERPYWELSNHEVMKA 262
Query: 232 CTDTKRFPQGFPKEC 246
D R P P +C
Sbjct: 263 INDGFRLPT--PMDC 275
>pdb|4ANN|A Chain A, Crystal Structure Staphylococcus Aureus Essb Cytoplasmic
Fragment
Length = 215
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 23/41 (56%)
Query: 121 VNFHTYSVLWNPQRIVFSVDGIPIREFKNLEAIGVPFPKNQ 161
VN Y+ + P + F+ DG+PI + + L+ + P P ++
Sbjct: 96 VNRTRYTFVLAPDELFFTRDGLPIAKTRGLQNVVDPLPVSE 136
>pdb|3RBY|A Chain A, Crystal Structure Of Uncharacterized Protein Ylr301w From
Saccharomycces Cerevisiae
pdb|3RBY|B Chain B, Crystal Structure Of Uncharacterized Protein Ylr301w From
Saccharomycces Cerevisiae
Length = 245
Score = 28.5 bits (62), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Query: 77 PTWDEIDFEFLGNLSGHPYTVHTNVYSQGKGDREQQFHLWFDPAV 121
P+ DE+ F F +G TV N QG G Q F+ W D V
Sbjct: 42 PSGDELSFPFEWAFAGTNETVKAN--DQGNGVVTQDFNFWLDTNV 84
>pdb|3FQD|A Chain A, Crystal Structure Of The S. Pombe Rat1-Rai1 Complex
Length = 899
Score = 28.1 bits (61), Expect = 4.4, Method: Composition-based stats.
Identities = 31/128 (24%), Positives = 50/128 (39%), Gaps = 30/128 (23%)
Query: 101 VYSQGKGDR--EQQFHLWFDP------AVNFHTYSVLWNPQRIVFSVDGIP--------- 143
+Y G +R EQ+FH+ D AV + + + W +++ G P
Sbjct: 589 LYEPGYRERYYEQKFHISPDEPEKIREAVKHYVHGLCW---VLLYYYQGCPSWTWYYPYH 645
Query: 144 ----IREFKNLEAIGVPFPKNQPMRIYSSLWNADDWATRGGL------IKTDWSQAPFTA 193
+FK+L +I V F NQP + Y L A++ L + TD +
Sbjct: 646 YAPFAADFKDLASIDVKFELNQPFKPYEQLLGVLPAASKNNLPEKLQTLXTDENSEIIDF 705
Query: 194 SYRNFKVD 201
NF +D
Sbjct: 706 YPENFTID 713
>pdb|3QX3|A Chain A, Human Topoisomerase Iibeta In Complex With Dna And
Etoposide
pdb|3QX3|B Chain B, Human Topoisomerase Iibeta In Complex With Dna And
Etoposide
Length = 803
Score = 28.1 bits (61), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 21/50 (42%), Gaps = 8/50 (16%)
Query: 189 APFTASYRNFKVDGSRAWLLQQMDSTNQRR--------LYWVRKNHMIYN 230
A T ++ K+D + WL M+ QRR LY H+ YN
Sbjct: 245 AAITLAFSKKKIDDRKEWLTNFMEDRRQRRLHGLPEQFLYGTATKHLTYN 294
>pdb|3AZX|A Chain A, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8
pdb|3AZX|B Chain B, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8
pdb|3AZY|A Chain A, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8
pdb|3AZY|B Chain B, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8
pdb|3AZY|C Chain C, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8
pdb|3AZY|D Chain D, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8
pdb|3AZZ|A Chain A, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8 In Complex With
Gluconolactone
pdb|3AZZ|B Chain B, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8 In Complex With
Gluconolactone
pdb|3AZZ|C Chain C, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8 In Complex With
Gluconolactone
pdb|3AZZ|D Chain D, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8 In Complex With
Gluconolactone
pdb|3B00|A Chain A, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8 In Complex With
Cetyltrimethylammonium Bromide
pdb|3B00|B Chain B, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8 In Complex With
Cetyltrimethylammonium Bromide
pdb|3B00|C Chain C, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8 In Complex With
Cetyltrimethylammonium Bromide
pdb|3B00|D Chain D, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8 In Complex With
Cetyltrimethylammonium Bromide
pdb|3B01|A Chain A, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8
pdb|3B01|B Chain B, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8
pdb|3B01|C Chain C, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8
pdb|3B01|D Chain D, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8
Length = 272
Score = 27.7 bits (60), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 52/111 (46%), Gaps = 14/111 (12%)
Query: 42 QSKKQHLFGKIDMQLKLVPRNSAGTVTAYYLRSQG------PTWDEIDF-EFLGNLSGHP 94
+ K + +GKI+++ KL P+ G A ++ PT EID E LG+ +
Sbjct: 89 EGKFEIKYGKIEIRAKL-PKGK-GIWPALWMLGNNIGEVGWPTCGEIDIMEMLGHDTRTV 146
Query: 95 Y-TVHTNVYSQGKGDREQQFHL---WFDPAVNFHTYSVLWNPQRIVFSVDG 141
Y T H YS G +HL D + +FH +S+ W+ + + VDG
Sbjct: 147 YGTAHGPGYS-GGASIGVAYHLPEGVPDFSEDFHIFSIEWDEDEVEWYVDG 196
>pdb|4DFS|A Chain A, Structure Of The Catalytic Domain Of An
Endo-1,3-Beta-Glucanase (Laminarinase) From Thermotoga
Petrophila Rku-1
pdb|4DFS|B Chain B, Structure Of The Catalytic Domain Of An
Endo-1,3-Beta-Glucanase (Laminarinase) From Thermotoga
Petrophila Rku-1
Length = 267
Score = 27.3 bits (59), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 52/111 (46%), Gaps = 14/111 (12%)
Query: 42 QSKKQHLFGKIDMQLKLVPRNSAGTVTAYYLRSQG------PTWDEIDF-EFLGNLSGHP 94
+ K + +GKI+++ KL P+ G A ++ PT EID E LG+ +
Sbjct: 97 EGKFEIKYGKIEIRAKL-PKGK-GIWPALWMLGNNIGEVGWPTCGEIDIMEMLGHDTRTV 154
Query: 95 Y-TVHTNVYSQGKGDREQQFHL---WFDPAVNFHTYSVLWNPQRIVFSVDG 141
Y T H YS G +HL D + +FH +S+ W+ + + VDG
Sbjct: 155 YGTAHGPGYS-GGASIGVAYHLPEGVPDFSEDFHIFSIEWDEDEVEWYVDG 204
>pdb|4F3S|A Chain A, Crystal Structure Of Periplasmic D-Alanine Abc Transporter
From Salmonella Enterica
Length = 255
Score = 27.3 bits (59), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 22/43 (51%)
Query: 147 FKNLEAIGVPFPKNQPMRIYSSLWNADDWATRGGLIKTDWSQA 189
FKN++ +G+ F K P+R +LW + + I W +A
Sbjct: 192 FKNVDQLGIAFKKGSPVRDDFNLWLKEQGPQKISGIVDSWXKA 234
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.448
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,615,641
Number of Sequences: 62578
Number of extensions: 378014
Number of successful extensions: 761
Number of sequences better than 100.0: 39
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 699
Number of HSP's gapped (non-prelim): 40
length of query: 249
length of database: 14,973,337
effective HSP length: 96
effective length of query: 153
effective length of database: 8,965,849
effective search space: 1371774897
effective search space used: 1371774897
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)