Query 047166
Match_columns 249
No_of_seqs 249 out of 1677
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 08:21:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047166.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047166hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd02176 GH16_XET Xyloglucan en 100.0 6.3E-78 1.4E-82 531.4 31.7 243 3-246 2-263 (263)
2 PLN03161 Probable xyloglucan e 100.0 1.7E-76 3.8E-81 525.7 31.2 246 4-249 24-289 (291)
3 cd02183 GH16_fungal_CRH1_trans 100.0 1.5E-45 3.3E-50 315.4 25.2 179 10-202 9-201 (203)
4 cd02175 GH16_lichenase lichena 100.0 5.8E-40 1.3E-44 282.6 25.2 175 11-202 25-212 (212)
5 PF00722 Glyco_hydro_16: Glyco 100.0 1.9E-37 4.2E-42 260.0 20.8 175 8-199 2-185 (185)
6 cd02178 GH16_beta_agarase Beta 100.0 3.3E-36 7.2E-41 266.5 22.8 179 15-201 55-257 (258)
7 cd00413 Glyco_hydrolase_16 gly 100.0 2.1E-35 4.5E-40 252.1 23.8 172 12-201 24-210 (210)
8 cd08023 GH16_laminarinase_like 100.0 2E-35 4.4E-40 257.3 22.5 178 13-201 33-235 (235)
9 cd02180 GH16_fungal_KRE6_gluca 100.0 3.5E-34 7.6E-39 257.3 19.1 182 13-201 36-294 (295)
10 cd02177 GH16_kappa_carrageenas 100.0 2.5E-33 5.5E-38 248.9 21.8 170 17-201 43-268 (269)
11 cd02182 GH16_Strep_laminarinas 100.0 4.2E-33 9.1E-38 246.8 20.6 180 14-201 42-258 (259)
12 cd02179 GH16_beta_GRP beta-1,3 100.0 2E-32 4.3E-37 249.0 18.8 134 38-173 98-268 (321)
13 cd08024 GH16_CCF Coelomic cyto 100.0 7.2E-32 1.6E-36 246.4 19.2 137 38-176 101-279 (330)
14 COG2273 SKN1 Beta-glucanase/Be 99.9 3.5E-26 7.5E-31 210.0 18.9 179 9-200 70-262 (355)
15 PF03935 SKN1: Beta-glucan syn 99.8 1.9E-18 4.2E-23 163.2 13.9 179 15-202 158-453 (504)
16 PF06955 XET_C: Xyloglucan end 99.8 6.1E-19 1.3E-23 118.7 3.6 43 204-246 6-51 (51)
17 cd02181 GH16_fungal_Lam16A_glu 99.7 8.7E-16 1.9E-20 137.2 13.2 155 17-176 41-251 (293)
18 PF13385 Laminin_G_3: Concanav 96.3 0.17 3.6E-06 39.4 13.0 74 120-217 84-157 (157)
19 cd00152 PTX Pentraxins are pla 93.3 4.6 9.9E-05 34.2 17.7 86 119-221 88-175 (201)
20 smart00159 PTX Pentraxin / C-r 92.1 6.7 0.00015 33.3 18.3 86 119-221 88-175 (206)
21 PF06439 DUF1080: Domain of Un 91.9 1.5 3.2E-05 35.9 9.1 119 24-150 29-156 (185)
22 PF10287 DUF2401: Putative TOS 89.7 1.7 3.6E-05 38.2 7.5 77 51-133 102-207 (235)
23 smart00210 TSPN Thrombospondin 88.8 10 0.00022 31.6 11.6 88 51-148 55-144 (184)
24 PF09264 Sial-lect-inser: Vibr 88.7 0.88 1.9E-05 38.5 4.9 98 36-147 16-120 (198)
25 smart00560 LamGL LamG-like jel 83.2 20 0.00043 28.0 14.4 67 119-202 59-127 (133)
26 PF00354 Pentaxin: Pentaxin fa 76.3 37 0.00081 28.7 10.1 87 119-222 82-170 (195)
27 cd00110 LamG Laminin G domain; 73.2 40 0.00087 26.0 16.3 130 48-200 20-150 (151)
28 PF02973 Sialidase: Sialidase, 65.9 84 0.0018 26.8 14.9 144 45-219 30-185 (190)
29 PF09224 DUF1961: Domain of un 60.6 46 0.00099 28.9 7.3 59 122-200 160-218 (218)
30 KOG1834 Calsyntenin [Extracell 57.3 13 0.00028 37.5 3.8 56 119-181 440-495 (952)
31 smart00282 LamG Laminin G doma 54.6 71 0.0015 24.4 7.1 72 120-201 61-133 (135)
32 cd06526 metazoan_ACD Alpha-cry 53.4 34 0.00075 24.4 4.8 53 15-70 18-70 (83)
33 cd06482 ACD_HspB10 Alpha cryst 51.8 25 0.00054 26.0 3.8 47 15-61 19-65 (87)
34 cd06470 ACD_IbpA-B_like Alpha- 47.6 34 0.00074 25.0 4.0 46 15-61 22-71 (90)
35 PF02210 Laminin_G_2: Laminin 41.7 1.4E+02 0.003 21.9 9.8 74 120-202 53-127 (128)
36 PF14099 Polysacc_lyase: Polys 37.4 2.5E+02 0.0054 23.6 12.1 75 114-200 145-224 (224)
37 cd06464 ACD_sHsps-like Alpha-c 34.6 61 0.0013 22.5 3.6 47 15-61 18-67 (88)
38 COG0071 IbpA Molecular chapero 31.4 1.3E+02 0.0029 23.9 5.5 47 15-61 61-111 (146)
39 cd06481 ACD_HspB9_like Alpha c 29.1 96 0.0021 22.6 3.9 48 14-61 17-65 (87)
40 PF06832 BiPBP_C: Penicillin-B 25.8 93 0.002 22.4 3.3 35 134-170 44-78 (89)
41 cd06479 ACD_HspB7_like Alpha c 24.9 1.4E+02 0.003 21.5 4.0 41 15-61 19-59 (81)
42 KOG4352 Fas-mediated apoptosis 24.3 1.6E+02 0.0036 24.2 4.7 35 111-146 93-127 (187)
43 PF07691 PA14: PA14 domain; I 23.9 1.1E+02 0.0024 23.4 3.7 28 120-148 58-85 (145)
44 cd06471 ACD_LpsHSP_like Group 22.6 1.5E+02 0.0032 21.3 3.9 47 15-62 21-74 (93)
45 PF00011 HSP20: Hsp20/alpha cr 20.4 1.1E+02 0.0025 22.2 3.0 55 15-71 18-76 (102)
No 1
>cd02176 GH16_XET Xyloglucan endotransglycosylase, member of glycosyl hydrolase family 16. Xyloglucan endotransglycosylases (XETs) cleave and religate xyloglucan polymers in plant cell walls via a transglycosylation mechanism. Xyloglucan is a soluble hemicellulose with a backbone of beta-1,4-linked glucose units, partially substituted with alpha-1,6-linked xylopyranose branches. It binds noncovalently to cellulose, cross-linking the adjacent cellulose microfibrils, giving it a key structural role as a matrix polymer. Therefore, XET plays an important role in all plant processes that require cell wall remodeling.
Probab=100.00 E-value=6.3e-78 Score=531.36 Aligned_cols=243 Identities=56% Similarity=1.088 Sum_probs=228.8
Q ss_pred ccccccccceeeecCCCeEEecCCcEEEEEEecCCCCeEEEccceEeEEEEEEEEecCCCCCceEEEEEEeec-CCCCCe
Q 047166 3 SAGNFNEEFDITWGDGRGKIFNNGQLLTLNLDRYSGSGFQSKKQHLFGKIDMQLKLVPRNSAGTVTAYYLRSQ-GPTWDE 81 (249)
Q Consensus 3 ~~~~~~~~~~~~~~~~nv~~~~~G~~l~L~l~~~sG~~i~Sk~~~~YG~~eariKlp~g~s~G~~~AFwl~~~-~~~~~E 81 (249)
.+++|.++|.++|+++||++.++|..|+|+|++++|++|.||..|+||+||||||||+++++|+||||||+++ ||.++|
T Consensus 2 ~~~~f~~~~~~~w~~~~~~~~~~g~~~~L~ld~~s~~~i~Sk~~f~YG~~E~riKlp~g~s~G~~pAFwl~~~~wp~~~E 81 (263)
T cd02176 2 VAASFDENFFVTWGPDHIRVSNDGTSVQLTLDQSSGSGFKSKNKYLFGFFSMRIKLPPGDSAGTVTAFYLSSQGPDNHDE 81 (263)
T ss_pred CcCCccccceeeEcCCcEEEeCCCCEEEEEEcCCCCccEEEccEEEEEEEEEEEEeCCCCCCCeEEEEEECCCCCCCCCe
Confidence 4578999999999999999998888899999999999999999999999999999999877899999999998 689999
Q ss_pred EEEEecCCCCCCceEEEeeeeeCCCCCcceEEEcCCCCCCCcEEEEEEEcCCcEEEEECCeeEEEEeecccCCcCCCCCC
Q 047166 82 IDFEFLGNLSGHPYTVHTNVYSQGKGDREQQFHLWFDPAVNFHTYSVLWNPQRIVFSVDGIPIREFKNLEAIGVPFPKNQ 161 (249)
Q Consensus 82 IDiE~lG~~~g~~~~~~tn~~~~g~~~~~~~~~l~~d~~~dfHtY~i~Wtp~~I~fyVDG~~v~~~~~~~~~~~~~P~~~ 161 (249)
||||++|+.+++++++|+|+|.++.+++++++.+++|++++||+|+|+|+|++|+|||||++||++++.+..+.+||+++
T Consensus 82 ID~E~lGn~~g~~~~~qtnv~~~g~g~r~~~~~l~fdpt~dFHtY~i~Wtp~~I~fyVDG~~vr~~~~~~~~g~~~P~~~ 161 (263)
T cd02176 82 IDFEFLGNVTGQPYTLQTNVFANGVGGREQRIYLWFDPTADFHTYSILWNPHQIVFYVDDVPIRVFKNNEALGVPYPSSQ 161 (263)
T ss_pred EEEEEecccCCCceEEEEEEeCCCCCCCceeeecCCCCCCCeEEEEEEEccceEEEEECCEEEEEEecccccCCCCCccc
Confidence 99999999888899999999999988888899999999999999999999999999999999999998776677899889
Q ss_pred ceEEEEEeeeCCCcCCCCCccccCCCCCCeEEEEeEEEEec-----------C---Cchhc----cCCCHHHHHHHHHHh
Q 047166 162 PMRIYSSLWNADDWATRGGLIKTDWSQAPFTASYRNFKVDG-----------S---RAWLL----QQMDSTNQRRLYWVR 223 (249)
Q Consensus 162 Pm~l~lnlw~gg~Wat~GG~~~~d~~~~P~~~~~~~~~v~~-----------~---~~~~~----~~~~~~~~~~~~~~~ 223 (249)
||+|++|||+||+|||+||++++||+++||+|.|++|+|.+ . ..||+ ++|+++|+++|+|||
T Consensus 162 Pm~l~~niW~g~~WAt~gG~~~~d~~~aPf~a~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 241 (263)
T cd02176 162 PMGVYASIWDGSDWATQGGRVKIDWSYAPFVASYRDFKLDGCVVDPGDSFSSCSCTEDWWNGSTYQQLSANQQRAMEWVR 241 (263)
T ss_pred eEEEEEeeEcCCCcccCCCcccccCCCCCeeEEEeeEEEeeeecCCCCccccCCCccccccccccccCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999997 1 24766 379999999999999
Q ss_pred hCCeeeecccCCCCCCCCCCCCC
Q 047166 224 KNHMIYNYCTDTKRFPQGFPKEC 246 (249)
Q Consensus 224 ~~~~~y~yc~d~~r~~~~~~~ec 246 (249)
++|||||||.|++|||. +||||
T Consensus 242 ~~~~~y~yC~d~~r~~~-~p~ec 263 (263)
T cd02176 242 RNYMVYDYCDDRKRYPV-PPPEC 263 (263)
T ss_pred HCCEEEecCCCCCcCCC-CcCCC
Confidence 99999999999999995 89999
No 2
>PLN03161 Probable xyloglucan endotransglucosylase/hydrolase protein; Provisional
Probab=100.00 E-value=1.7e-76 Score=525.66 Aligned_cols=246 Identities=53% Similarity=1.004 Sum_probs=229.3
Q ss_pred cccccccceeeecCCCeEEecCCcEEEEEEecCCCCeEEEccceEeEEEEEEEEecCCCCCceEEEEEEeecCCCCCeEE
Q 047166 4 AGNFNEEFDITWGDGRGKIFNNGQLLTLNLDRYSGSGFQSKKQHLFGKIDMQLKLVPRNSAGTVTAYYLRSQGPTWDEID 83 (249)
Q Consensus 4 ~~~~~~~~~~~~~~~nv~~~~~G~~l~L~l~~~sG~~i~Sk~~~~YG~~eariKlp~g~s~G~~~AFwl~~~~~~~~EID 83 (249)
..+|.++|.++|+.+|+.+.++|..|+|+|++.+|++|+||+.|+||+||||||||+|+++|+||||||++..+.++|||
T Consensus 24 ~~~f~~~~~~~w~~~~~~~~~~g~~l~L~ld~~sgs~~~Sk~~f~yGr~E~riKLp~G~saG~v~AFwl~s~~~~~dEID 103 (291)
T PLN03161 24 EADFSKSMYFTWGADHSSMLGNGDNLQLVLDQSSGSGIKSKRAFLFGSIEMLIKLVPGNSAGTVTAYYLSSTGSRHDEID 103 (291)
T ss_pred cccccccceeeEcCCcEEEeCCCCEEEEEEeCCccCcEEecceEEEEEEEEEEEeCCCCCCCeEEEEEecCCCCCCCeEE
Confidence 45899999999999999998888889999999999999999999999999999999987899999999999766899999
Q ss_pred EEecCCCCCCceEEEeeeeeCCCCCcceEEEcCCCCCCCcEEEEEEEcCCcEEEEECCeeEEEEeecccCCcCCCCCCce
Q 047166 84 FEFLGNLSGHPYTVHTNVYSQGKGDREQQFHLWFDPAVNFHTYSVLWNPQRIVFSVDGIPIREFKNLEAIGVPFPKNQPM 163 (249)
Q Consensus 84 iE~lG~~~g~~~~~~tn~~~~g~~~~~~~~~l~~d~~~dfHtY~i~Wtp~~I~fyVDG~~v~~~~~~~~~~~~~P~~~Pm 163 (249)
||++|+++++++++|+|+|.+|.+++++++.+++|++++||+|+|+|+|++|+|||||++||++++.+..+.+||+++||
T Consensus 104 iEfLG~~~g~~~~vqtN~y~~g~g~re~~~~l~fDpt~dFHtYsI~Wtp~~I~wyVDG~~iRt~~~~~~~g~~yP~~~pM 183 (291)
T PLN03161 104 FEFLGNVSGQPYTIHTNIYTQGNGSREQQFRPWFDPTADFHNYTIHWNPSEVVWYVDGTPIRVFRNYENEGIAYPNKQGM 183 (291)
T ss_pred EEecCCCCCCceEEEeceEeCCcCCcceeccccCCCccCcEEEEEEEchhhEEEEECCEEEEEEEcccccCCcCCCccce
Confidence 99999988899999999999999999999999999999999999999999999999999999998876667789987899
Q ss_pred EEEEEeeeCCCcCCCCCccccCCCCCCeEEEEeEEEEec-------------C---Cchhc----cCCCHHHHHHHHHHh
Q 047166 164 RIYSSLWNADDWATRGGLIKTDWSQAPFTASYRNFKVDG-------------S---RAWLL----QQMDSTNQRRLYWVR 223 (249)
Q Consensus 164 ~l~lnlw~gg~Wat~GG~~~~d~~~~P~~~~~~~~~v~~-------------~---~~~~~----~~~~~~~~~~~~~~~ 223 (249)
+|++|||+|++|||+||++|+||+++||+|.|++|++++ . ..||+ ++|+++|+++|+|||
T Consensus 184 ~i~~siW~g~~wAt~gG~~kidw~~aPf~a~~~~f~~~~C~~~~~~~~~~c~~~~~~~~~~~~~~~~l~~~~~~~~~~v~ 263 (291)
T PLN03161 184 RVYSSLWNADNWATQGGRVKIDWTLAPFVARGRRFRARACKWNGPVSIKQCADPTPSNWWTSPSYSQLTNAQLTQMKKVR 263 (291)
T ss_pred EEEEeeecCCCcccCCCceeccCCcCCeeEEeeeEEEEeeccCCCCCccccCCCCccccccCccccCCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999975 0 23666 379999999999999
Q ss_pred hCCeeeecccCCCCCCCCCCCCCcCC
Q 047166 224 KNHMIYNYCTDTKRFPQGFPKECAVH 249 (249)
Q Consensus 224 ~~~~~y~yc~d~~r~~~~~~~ec~~~ 249 (249)
++|||||||.|++|||.++||||.++
T Consensus 264 ~~~m~Y~YC~D~~R~~~~~p~EC~~~ 289 (291)
T PLN03161 264 DNFMIYDYCKDTKRFNGVMPPECFKP 289 (291)
T ss_pred hCcEEEeccCCCCcCCCCcCcccCCC
Confidence 99999999999999998789999764
No 3
>cd02183 GH16_fungal_CRH1_transglycosylase glycosylphosphatidylinositol-glucanosyltransferase. Group of fungal GH16 members related to Saccharomyces cerevisiae Crh1p. Chr1p and Crh2p are transglycosylases that are required for the linkage of chitin to beta(1-3)glucose branches of beta(1-6)glucan, an important step in the assembly of new cell wall. Both have been shown to be glycosylphosphatidylinositol (GPI)-anchored. A third homologous protein, Crr1p, functions in the formation of the spore wall. They belongs to the family 16 of glycosyl hydrolases that includes lichenase, xyloglucan endotransglycosylase (XET), beta-agarase, kappa-carrageenase, endo-beta-1,3-glucanase, endo-beta-1,3-1,4-glucanase, and endo-beta-galactosidase, all of which have a conserved jelly roll fold with a deep active site channel harboring the catalytic residues.
Probab=100.00 E-value=1.5e-45 Score=315.44 Aligned_cols=179 Identities=30% Similarity=0.589 Sum_probs=155.5
Q ss_pred cceeeecCCCeEEecCCcEEEEEEecC-CCCeEEEccceEeEEEEEEEEecCCCCCceEEEEEEeecCCCCCeEEEEecC
Q 047166 10 EFDITWGDGRGKIFNNGQLLTLNLDRY-SGSGFQSKKQHLFGKIDMQLKLVPRNSAGTVTAYYLRSQGPTWDEIDFEFLG 88 (249)
Q Consensus 10 ~~~~~~~~~nv~~~~~G~~l~L~l~~~-sG~~i~Sk~~~~YG~~eariKlp~g~s~G~~~AFwl~~~~~~~~EIDiE~lG 88 (249)
.++.+...+||.+.. +. |.|+|++. +|++|.|+++|+||+||||||||.+ +|+||||||+++ .++|||||++|
T Consensus 9 ~~~~~~~~~~~~~~~-~~-~~l~~~~~~~~~~i~s~~~f~YG~~EaR~Klp~g--~G~wpAfWl~~~--~~gEIDIE~~G 82 (203)
T cd02183 9 SYDWTVTSGTVDYDD-DG-ASLTIPKRGDGPTISSTFYIFYGKVEVTMKAAPG--QGIVSSFVLQSD--DLDEIDWEWVG 82 (203)
T ss_pred cCccEecCCcEeECC-Ce-EEEEEcCCCCCCeEEeccEEEeEEEEEEEEecCC--CeEEEEEEEECC--CCCEEEEEecC
Confidence 466788899999963 33 88999776 7999999999999999999999998 899999999987 67999999999
Q ss_pred CCCCCceEEEeeeeeCCCC---CcceEEEcCCCCCCCcEEEEEEEcCCcEEEEECCeeEEEEeeccc-CCcCCCCCCceE
Q 047166 89 NLSGHPYTVHTNVYSQGKG---DREQQFHLWFDPAVNFHTYSVLWNPQRIVFSVDGIPIREFKNLEA-IGVPFPKNQPMR 164 (249)
Q Consensus 89 ~~~g~~~~~~tn~~~~g~~---~~~~~~~l~~d~~~dfHtY~i~Wtp~~I~fyVDG~~v~~~~~~~~-~~~~~P~~~Pm~ 164 (249)
+ ++..+|+|++.++.. ++.+.+.+.++++++||+|+|+|+|++|+|||||++++++++.+. .+..||. +||+
T Consensus 83 ~---~~~~~~tn~~~~g~~~~~~~~~~~~~~~~~~~dFHtY~veWtpd~I~~yVDG~~v~~~~~~~~~~~~~~p~-~P~~ 158 (203)
T cd02183 83 G---DLTQVQTNYFGKGNTTTYDRGGYHPVPNPQTEEFHTYTIDWTKDRITWYIDGKVVRTLTKADTTGGYGYPQ-TPMR 158 (203)
T ss_pred C---CCCEEEeEEECCCCCCCCCCceEeeCCCCCCcCcEEEEEEEecCEEEEEECCEEEEEEehhhcccCCCCCC-CCcE
Confidence 7 456899999976654 345667778888899999999999999999999999999987542 3467996 9999
Q ss_pred EEEEeeeCCC---------cCCCCCccccCCCCCCeEEEEeEEEEec
Q 047166 165 IYSSLWNADD---------WATRGGLIKTDWSQAPFTASYRNFKVDG 202 (249)
Q Consensus 165 l~lnlw~gg~---------Wat~GG~~~~d~~~~P~~~~~~~~~v~~ 202 (249)
|+||+|+||+ || ||+ +||+.+||.|.|++|||.+
T Consensus 159 l~ln~W~gg~~~~~~g~~~Wa--Gg~--~d~~~~P~~~~vd~v~v~~ 201 (203)
T cd02183 159 LQIGIWAGGDPSNAPGTIEWA--GGE--TDYDKGPFTMYVKSVTVTD 201 (203)
T ss_pred EEEEEecCCCccccCCcccCC--CCc--cCCCCCCEEEEEEEEEEEe
Confidence 9999999985 99 786 5999999999999999976
No 4
>cd02175 GH16_lichenase lichenase, member of glycosyl hydrolase family 16. Lichenase, also known as 1,3-1,4-beta-glucanase, is a member of glycosyl hydrolase family 16, that specifically cleaves 1,4-beta-D-glucosidic bonds in mixed-linked beta glucans that also contain 1,3-beta-D-glucosidic linkages. Natural substrates of beta-glucanase are beta-glucans from grain endosperm cell walls or lichenan from the Islandic moss, Cetraria islandica. This protein is found not only in bacteria but also in anaerobic fungi. This domain includes two seven-stranded antiparallel beta-sheets that are adjacent to one another forming a compact, jellyroll beta-sandwich structure.
Probab=100.00 E-value=5.8e-40 Score=282.60 Aligned_cols=175 Identities=31% Similarity=0.582 Sum_probs=147.8
Q ss_pred ceeeecCCCeEEecCCcEEEEEEecC-------CCCeEEEccceEeEEEEEEEEecCCCCCceEEEEEEeec---CCCCC
Q 047166 11 FDITWGDGRGKIFNNGQLLTLNLDRY-------SGSGFQSKKQHLFGKIDMQLKLVPRNSAGTVTAYYLRSQ---GPTWD 80 (249)
Q Consensus 11 ~~~~~~~~nv~~~~~G~~l~L~l~~~-------sG~~i~Sk~~~~YG~~eariKlp~g~s~G~~~AFwl~~~---~~~~~ 80 (249)
...+|+++||++. +|. |+|++.+. ++++|.|+.+|+||+||||||+|.+ +|+||||||++. +..++
T Consensus 25 ~~~~~~~~nv~v~-~g~-L~l~~~~~~~~~~~~tsg~i~S~~~f~yG~~ear~k~~~~--~G~~~Afwl~~~~~~~~~~~ 100 (212)
T cd02175 25 FNCTWSADNVEFS-DGG-LALTLTNDTYGEKPYACGEYRTRGFYGYGRYEVRMKPAKG--SGVVSSFFTYTGPYDGDPHD 100 (212)
T ss_pred EeeeEccccEEEE-CCe-EEEEEeCCcCCCCccccceEEECceEEeeEEEEEEEcCCC--CeEEEEEEEEecCCCCCCCC
Confidence 3457899999996 776 78888543 4789999999999999999999987 899999999974 24579
Q ss_pred eEEEEecCCCCCCceEEEeeeeeCCCCCcceEEEcCCCCCCCcEEEEEEEcCCcEEEEECCeeEEEEeecccCCcCCCCC
Q 047166 81 EIDFEFLGNLSGHPYTVHTNVYSQGKGDREQQFHLWFDPAVNFHTYSVLWNPQRIVFSVDGIPIREFKNLEAIGVPFPKN 160 (249)
Q Consensus 81 EIDiE~lG~~~g~~~~~~tn~~~~g~~~~~~~~~l~~d~~~dfHtY~i~Wtp~~I~fyVDG~~v~~~~~~~~~~~~~P~~ 160 (249)
|||||++|++ +..++++++.++.+.....+.++++++++||+|+|+|+|++|+|||||+++++++..+ ..+|.
T Consensus 101 EIDiE~~g~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~Y~v~W~~~~i~~yvDg~~v~~~~~~~---~~~p~- 173 (212)
T cd02175 101 EIDIEFLGKD---TTKVQFNYYTNGVGGHEKLIDLGFDASEGFHTYAFEWEPDSIRWYVDGELVHEATATD---PNIPD- 173 (212)
T ss_pred EEEEEEccCC---CCEeEEEEECCCCCCCceEEeCCCCcccccEEEEEEEeCCEEEEEECCEEEEEEcCcc---CCCCC-
Confidence 9999999974 3467888887776666666778888899999999999999999999999999998643 35786
Q ss_pred CceEEEEEeeeCC---CcCCCCCccccCCCCCCeEEEEeEEEEec
Q 047166 161 QPMRIYSSLWNAD---DWATRGGLIKTDWSQAPFTASYRNFKVDG 202 (249)
Q Consensus 161 ~Pm~l~lnlw~gg---~Wat~GG~~~~d~~~~P~~~~~~~~~v~~ 202 (249)
.||+|+||+|.|+ +|+ |. +|. .+|+.|+||+|||..
T Consensus 174 ~p~~i~~n~w~~~~~~~W~---G~--~~~-~~p~~~~vd~vr~~~ 212 (212)
T cd02175 174 TPGKIMMNLWPGDGVDDWL---GP--FDG-GTPLTAEYDWVSYTP 212 (212)
T ss_pred CCcEEEEEEEcCCCCCCcC---Cc--CCC-CCCeEEEEEEEEEeC
Confidence 9999999999985 598 54 365 889999999999963
No 5
>PF00722 Glyco_hydro_16: Glycosyl hydrolases family 16; InterPro: IPR000757 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 16 GH16 from CAZY comprises enzymes with a number of known activities; lichenase (3.2.1.73 from EC); xyloglucan xyloglucosyltransferase (2.4.1.207 from EC); agarase (3.2.1.81 from EC); kappa-carrageenase (3.2.1.83 from EC); endo-beta-1,3-glucanase (3.2.1.39 from EC); endo-beta-1,3-1,4-glucanase (3.2.1.6 from EC); endo-beta-galactosidase (3.2.1.103 from EC).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3DGT_A 2CL2_A 2WLQ_A 2WNE_A 2W39_A 2W52_A 3ILN_A 4DFS_A 1UMZ_A 1UN1_B ....
Probab=100.00 E-value=1.9e-37 Score=260.01 Aligned_cols=175 Identities=35% Similarity=0.657 Sum_probs=149.2
Q ss_pred cccceeeecCCCeEEecCCcEEEEEEec-----CCCCeEEEccceEeEEEEEEEEecCCCCCceEEEEEEeec--CCCCC
Q 047166 8 NEEFDITWGDGRGKIFNNGQLLTLNLDR-----YSGSGFQSKKQHLFGKIDMQLKLVPRNSAGTVTAYYLRSQ--GPTWD 80 (249)
Q Consensus 8 ~~~~~~~~~~~nv~~~~~G~~l~L~l~~-----~sG~~i~Sk~~~~YG~~eariKlp~g~s~G~~~AFwl~~~--~~~~~ 80 (249)
.++|+++|+++||.+. +|..|.|++++ .++++|+|+..++||+||||||+|.+ +|+||||||.+. |+..+
T Consensus 2 ~~~~~~~~~~~nv~~~-~g~~L~L~~~~~~~~~~~sg~i~s~~~~~yG~~ear~k~~~~--~G~~~afwl~~~~~~~~~~ 78 (185)
T PF00722_consen 2 GDQYNCTWSPDNVTVE-DGGNLVLRADKEPGKPYTSGEIQSKFSFKYGRFEARIKAPPG--PGVWPAFWLTGADGWPDGG 78 (185)
T ss_dssp CCTEEEEETCCGEEEE-TTSEEEEEEEEEETEEEEEEEEEESSEBSSEEEEEEEECSCS--TTEEEEEEEETTGSTTTTE
T ss_pred CCceEEeeCCCcEEEc-CCCEEEEEEEecccCceEeCEEEEcceeECcEEEEEEEecCC--CceEecccccccccccchh
Confidence 3679999999999996 66448899876 56899999999999999999999887 899999999753 68999
Q ss_pred eEEEEecCCCCCCceEEEeeeeeCCCCCc--ceEEEcCCCCCCCcEEEEEEEcCCcEEEEECCeeEEEEeecccCCcCCC
Q 047166 81 EIDFEFLGNLSGHPYTVHTNVYSQGKGDR--EQQFHLWFDPAVNFHTYSVLWNPQRIVFSVDGIPIREFKNLEAIGVPFP 158 (249)
Q Consensus 81 EIDiE~lG~~~g~~~~~~tn~~~~g~~~~--~~~~~l~~d~~~dfHtY~i~Wtp~~I~fyVDG~~v~~~~~~~~~~~~~P 158 (249)
|||||++|+.. ..+++++|..+.+.. ...+.+..++.++||+|+|+|+|++|+|||||++++++......+..+|
T Consensus 79 EIDiE~~g~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~y~~~W~~~~i~fyiDg~~~~~~~~~~~~~~~~P 155 (185)
T PF00722_consen 79 EIDIEFLGNDP---TQVQTNVHWNGDGDSNWEKRVPLGFDPSTDFHTYGFEWTPDRIRFYIDGKLVRTVTNSDVPGSPYP 155 (185)
T ss_dssp EEEEEEETTST---TEEEEEEEBTTBSCEEEEEEEETSSTTTTSEEEEEEEEETTEEEEEETTEEEEEEESSGSTTTCSS
T ss_pred hhhhhhccccc---cceeeeeeecccCCcccceeeccccCcCCCcEEEEEEEecCeEEEEECCEEEEEEeccccccccCc
Confidence 99999999853 359999998887765 4567778889999999999999999999999999999998754434588
Q ss_pred CCCceEEEEEeeeCCCcCCCCCccccCCCCCCeEEEEeEEE
Q 047166 159 KNQPMRIYSSLWNADDWATRGGLIKTDWSQAPFTASYRNFK 199 (249)
Q Consensus 159 ~~~Pm~l~lnlw~gg~Wat~GG~~~~d~~~~P~~~~~~~~~ 199 (249)
...||+|.+++|.|++|++..| .|+|||||
T Consensus 156 ~~~~~~~~~~~w~~~~~~~~~~-----------~m~vDwvr 185 (185)
T PF00722_consen 156 FSTPMNLALGLWPGGDWAGPAG-----------EMEVDWVR 185 (185)
T ss_dssp EEEEEEEEEEECEBTTTHSSEC-----------EEEEEEEE
T ss_pred ccceeEEEEccccCCCCCCCCC-----------EEEEEeEC
Confidence 7689999999999998873333 68999987
No 6
>cd02178 GH16_beta_agarase Beta-agarase, member of glycosyl hydrolase family 16. Beta-agarase is a glycosyl hydrolase family 16 (GH16) member that hydrolyzes the internal beta-1,4-linkage of agarose, a hydrophilic polysaccharide found in the cell wall of Rhodophyceaea, marine red algae. Agarose is a linear chain of galactose units linked by alternating L-alpha-1,3- and D-beta-1,4-linkages that are additionally modified by a 3,6-anhydro-bridge. Agarose forms thermo-reversible gels that are widely used in the food industry or as a laboratory medium. While beta-agarases are also found in two other families derived from the sequence-based classification of glycosyl hydrolases (GH50, and GH86) the GH16 members are most abundant. This domain adopts a curved beta-sandwich conformation, with a tunnel-shaped active site cavity, referred to as a jellyroll fold.
Probab=100.00 E-value=3.3e-36 Score=266.53 Aligned_cols=179 Identities=22% Similarity=0.257 Sum_probs=137.2
Q ss_pred ecCCCeEEecCCcEEEEEEecC-----------CCCeEEEccceEeEEEEEEEEecCCCCCceEEEEEEeec-CCCCCeE
Q 047166 15 WGDGRGKIFNNGQLLTLNLDRY-----------SGSGFQSKKQHLFGKIDMQLKLVPRNSAGTVTAYYLRSQ-GPTWDEI 82 (249)
Q Consensus 15 ~~~~nv~~~~~G~~l~L~l~~~-----------sG~~i~Sk~~~~YG~~eariKlp~g~s~G~~~AFwl~~~-~~~~~EI 82 (249)
+.++||.+ ++|+ |.|++.+. ++|+|.|++.|+||+||||||+|.+ +.+|||||++. ++.++||
T Consensus 55 y~~~nv~v-~~G~-L~i~a~~~~~~~~~~~~~~tsg~i~t~~~~~YG~~EaR~K~p~~---~~~pAfW~~~~~~~~~gEI 129 (258)
T cd02178 55 FSADNVSV-EDGN-LVLSATRHPGTELGNGYKVTTGSITSKEKVKYGYFEARAKASNL---PMSSAFWLLSDTKDSTTEI 129 (258)
T ss_pred EccCCeEE-ECCE-EEEEEEcCCCCcCCCCccEEEEEEEeCCceEEEEEEEEEEcCCC---CccceEEEccCCCCCCCcE
Confidence 45789998 4887 77877543 3578999999999999999999986 35899999996 6789999
Q ss_pred EE-EecCCCC--CCceEEEeeeeeCCCC-----Cc---ceEEEcCCCCCCCcEEEEEEEc-CCcEEEEECCeeEEEEeec
Q 047166 83 DF-EFLGNLS--GHPYTVHTNVYSQGKG-----DR---EQQFHLWFDPAVNFHTYSVLWN-PQRIVFSVDGIPIREFKNL 150 (249)
Q Consensus 83 Di-E~lG~~~--g~~~~~~tn~~~~g~~-----~~---~~~~~l~~d~~~dfHtY~i~Wt-p~~I~fyVDG~~v~~~~~~ 150 (249)
|| |++|+.. ..+..+|+++|....+ .+ ...+....+.+++||+|+|+|+ |++|+|||||++++++++.
T Consensus 130 DI~E~~g~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~fHtY~veW~~p~~i~fyvDG~~~~~~~~~ 209 (258)
T cd02178 130 DILEHYGGDREEWFATRMNSNTHVFIRDPEQDYQPKDDGSWYYNPTELADDFHVYGVYWKDPDTIRFYIDGVLVRTVENS 209 (258)
T ss_pred EhhhccCCCCCccccceeeeeEEEccCCCCCCccccccceeecCCCccccCeEEEEEEEcCCCeEEEEECCEEEEEEcCc
Confidence 95 9999753 1245688887643221 11 2234455667899999999999 9999999999999999875
Q ss_pred ccCCcCCCCCCceEEEEEeeeCCCcCCCCCccccCCCCCCeEEEEeEEEEe
Q 047166 151 EAIGVPFPKNQPMRIYSSLWNADDWATRGGLIKTDWSQAPFTASYRNFKVD 201 (249)
Q Consensus 151 ~~~~~~~P~~~Pm~l~lnlw~gg~Wat~GG~~~~d~~~~P~~~~~~~~~v~ 201 (249)
+. ...+|+++||+|+||+++|| |+...+.. ..-...|..|.||||||.
T Consensus 210 ~~-~~~~~f~~p~~liln~avg~-w~g~~~~~-~~~~~~p~~m~VDYVRvy 257 (258)
T cd02178 210 EI-TDGTGFDQPMYIIIDTETYD-WRGEPTDE-ELADDSKNTFYVDYVRVY 257 (258)
T ss_pred cc-CcCCcCCCCeEEEEEecccc-CCCCCCcc-ccCCCCCCeEEEEEEEEe
Confidence 43 34577789999999999998 98211122 122456999999999995
No 7
>cd00413 Glyco_hydrolase_16 glycosyl hydrolase family 16. The O-Glycosyl hydrolases are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A glycosyl hydrolase classification system based on sequence similarity has led to the definition of more than 95 different families inlcuding glycosyl hydrolase family 16. Family 16 includes lichenase, xyloglucan endotransglycosylase (XET), beta-agarase, kappa-carrageenase, endo-beta-1,3-glucanase, endo-beta-1,3-1,4-glucanase, and endo-beta-galactosidase, all of which have a conserved jelly roll fold with a deep active site channel harboring the catalytic residues.
Probab=100.00 E-value=2.1e-35 Score=252.15 Aligned_cols=172 Identities=37% Similarity=0.547 Sum_probs=142.2
Q ss_pred eeeecCCCeEEecCCcEEEEEEecC------CCCeEEE-ccceEeEEEEEEEEecCCCCCceEEEEEEeec---CCCCCe
Q 047166 12 DITWGDGRGKIFNNGQLLTLNLDRY------SGSGFQS-KKQHLFGKIDMQLKLVPRNSAGTVTAYYLRSQ---GPTWDE 81 (249)
Q Consensus 12 ~~~~~~~nv~~~~~G~~l~L~l~~~------sG~~i~S-k~~~~YG~~eariKlp~g~s~G~~~AFwl~~~---~~~~~E 81 (249)
...++++||.+.++|. |.|++.+. ++++|.| ++.|+||+||+|||+|.+ .|+|+||||++. |+..+|
T Consensus 24 ~~~~~~~nv~~~~~G~-L~l~~~~~~~~~~~~sg~i~s~~~~~~yG~~ear~k~~~~--~G~~~afw~~~~~~~~~~~~E 100 (210)
T cd00413 24 NMTNSPNNVYVENDGG-LTLRTDRDQTDGPYSSAEIDSQKNNYTYGYYEARAKLAGG--PGAVSAFWTYSDDDDPPDGGE 100 (210)
T ss_pred eEEECccCEEEeCCCe-EEEEEEecCCCCceEeEEEEeCcceEeeEEEEEEEEcCCC--CceEEEEEEeCCCCCCCCCCe
Confidence 3578899999975587 77887543 4689999 999999999999999987 899999999997 367999
Q ss_pred EEEEecCCCCCCceEEEeeeeeCCCC-----CcceEEEcCCCCCCCcEEEEEEEcCCcEEEEECCeeEEEEeecccCCcC
Q 047166 82 IDFEFLGNLSGHPYTVHTNVYSQGKG-----DREQQFHLWFDPAVNFHTYSVLWNPQRIVFSVDGIPIREFKNLEAIGVP 156 (249)
Q Consensus 82 IDiE~lG~~~g~~~~~~tn~~~~g~~-----~~~~~~~l~~d~~~dfHtY~i~Wtp~~I~fyVDG~~v~~~~~~~~~~~~ 156 (249)
||||++|++ +..+++++|..+.+ .....+.+++++.++||+|+|+|+|++|+|||||++++++.+.
T Consensus 101 IDiE~~~~~---~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~H~Y~~~W~~~~i~~yvDG~~~~~~~~~------ 171 (210)
T cd00413 101 IDIEFLGRD---PTTVQTNVHWPGYGAGATTGEEKSVHLPFDPADDFHTYRVDWTPGEITFYVDGVLVATITNQ------ 171 (210)
T ss_pred EEEEecccC---CCeEEEEEecCCCCcccccccceeecCCCCCccCeEEEEEEEeCCEEEEEECCEEEEEECCC------
Confidence 999999874 44688888865543 2234455666678999999999999999999999999998653
Q ss_pred CCCCCceEEEEEeeeCCCcCCCCCccccCCCCCCeEEEEeEEEEe
Q 047166 157 FPKNQPMRIYSSLWNADDWATRGGLIKTDWSQAPFTASYRNFKVD 201 (249)
Q Consensus 157 ~P~~~Pm~l~lnlw~gg~Wat~GG~~~~d~~~~P~~~~~~~~~v~ 201 (249)
.|. +||+|+||+|.+++|+ |. .+....|..|.||+|||.
T Consensus 172 ~p~-~p~~i~ln~~~~~~~~---~~--~~~~~~~~~~~Vd~vrvy 210 (210)
T cd00413 172 VPD-DPMNIILNLWSDGGWW---WG--GPPPGAPAYMEIDWVRVY 210 (210)
T ss_pred CCC-CCcEEEEEEEECCCCc---cc--CCCCCCCcEEEEEEEEEC
Confidence 676 9999999999999887 32 244678999999999983
No 8
>cd08023 GH16_laminarinase_like Laminarinase, member of the glycosyl hydrolase family 16. Laminarinase, also known as glucan endo-1,3-beta-D-glucosidase, is a glycosyl hydrolase family 16 member that hydrolyzes 1,3-beta-D-glucosidic linkages in 1,3-beta-D-glucans such as laminarins, curdlans, paramylons, and pachymans, with very limited action on mixed-link (1,3-1,4-)-beta-D-glucans.
Probab=100.00 E-value=2e-35 Score=257.34 Aligned_cols=178 Identities=25% Similarity=0.413 Sum_probs=142.6
Q ss_pred eeecCCCeEEecCCcEEEEEEecC----------CCCeEEE--ccceEeEEEEEEEEecCCCCCceEEEEEEeec-----
Q 047166 13 ITWGDGRGKIFNNGQLLTLNLDRY----------SGSGFQS--KKQHLFGKIDMQLKLVPRNSAGTVTAYYLRSQ----- 75 (249)
Q Consensus 13 ~~~~~~nv~~~~~G~~l~L~l~~~----------sG~~i~S--k~~~~YG~~eariKlp~g~s~G~~~AFwl~~~----- 75 (249)
..+.++||.+. +|. |.|++.+. ++|+|.| ++.|+||+||||||+|.+ +|++|||||++.
T Consensus 33 ~~~~~~nv~v~-~G~-L~i~~~~~~~~~~~~~~~~sg~i~S~~~~~~~yG~~E~r~k~~~~--~G~~pafWl~~~~~~~~ 108 (235)
T cd08023 33 YTYRPENAYVE-DGN-LVITARKEPDKGGDGYPYTSGRITTKGKFSFTYGRVEARAKLPKG--QGTWPAFWMLGENIKYV 108 (235)
T ss_pred EeCCCCCeEEE-CCE-EEEEEEECCCCCCCcccEEEEEEEECCCcceeCCEEEEEEEccCC--CCceeEEEEcCCCCCCC
Confidence 46789999995 887 77877532 2578999 899999999999999988 899999999985
Q ss_pred -CCCCCeEEE-EecCCCCCCceEEEeeeeeCCCC----CcceEEEcCC-CCCCCcEEEEEEEcCCcEEEEECCeeEEEEe
Q 047166 76 -GPTWDEIDF-EFLGNLSGHPYTVHTNVYSQGKG----DREQQFHLWF-DPAVNFHTYSVLWNPQRIVFSVDGIPIREFK 148 (249)
Q Consensus 76 -~~~~~EIDi-E~lG~~~g~~~~~~tn~~~~g~~----~~~~~~~l~~-d~~~dfHtY~i~Wtp~~I~fyVDG~~v~~~~ 148 (249)
|+.++|||| |++|+. +..+++++|..+.. .....+.... +..++||+|+|+|+|++|+|||||+++++++
T Consensus 109 ~w~~~~EIDI~E~~g~~---~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~fHtY~~~W~p~~i~~yvDG~~v~~~~ 185 (235)
T cd08023 109 GWPASGEIDIMEYVGNE---PNTVYGTLHGGATNDGNNGSGGSYTLPTDDLSDDFHTYAVEWTPDKITFYVDGKLYFTYT 185 (235)
T ss_pred CCCCCCcceeEecCCCC---CCeEEEEEECCCCCCCCCcccccEECCCCCcCCCcEEEEEEEECCEEEEEECCEEEEEEc
Confidence 477899996 999985 44688888876542 2233455544 6789999999999999999999999999998
Q ss_pred ecccCC-cCCCCCCceEEEEEeeeCCCcCCCCCccccCCCCCCeEEEEeEEEEe
Q 047166 149 NLEAIG-VPFPKNQPMRIYSSLWNADDWATRGGLIKTDWSQAPFTASYRNFKVD 201 (249)
Q Consensus 149 ~~~~~~-~~~P~~~Pm~l~lnlw~gg~Wat~GG~~~~d~~~~P~~~~~~~~~v~ 201 (249)
+..... ..+|+++||+|+||+++||+|+ |.. ......|..|.||+|||.
T Consensus 186 ~~~~~~~~~~~~~~p~~liln~~~gg~w~---g~~-~~~~~~p~~~~VDyVrvy 235 (235)
T cd08023 186 NPNTDNGGQWPFDQPFYLILNLAVGGNWP---GPP-DDDTPFPATMEVDYVRVY 235 (235)
T ss_pred ccccCCcccCCCCCCcEEEEEEEEcCCCC---CCC-CCCCCCCCEEEEEEEEEC
Confidence 764321 2356679999999999999998 531 234577999999999983
No 9
>cd02180 GH16_fungal_KRE6_glucanase Saccharomyces cerevisiae KRE6 and related glucanses, member of glycosyl hydrolase family 16. KRE6 is a Saccharomyces cerevisiae glucanase that participates in the synthesis of beta-1,6-glucan, a major structural component of the cell wall. It is a golgi membrane protein required for normal beta-1,6-glucan levels in the cell wall. KRE6 is closely realted to laminarinase, a glycosyl hydrolase family 16 member that hydrolyzes 1,3-beta-D-glucosidic linkages in 1,3-beta-D-glucans such as laminarins, curdlans, paramylons, and pachymans, with very limited action on mixed-link (1,3-1,4-)-beta-D-glucans.
Probab=100.00 E-value=3.5e-34 Score=257.31 Aligned_cols=182 Identities=21% Similarity=0.193 Sum_probs=127.9
Q ss_pred eeecCCCeEEecCCcEEEEEEec-------CCCCeEEE--ccceEeEEEEEEEEecCC-CCCceEEEEEEeec-------
Q 047166 13 ITWGDGRGKIFNNGQLLTLNLDR-------YSGSGFQS--KKQHLFGKIDMQLKLVPR-NSAGTVTAYYLRSQ------- 75 (249)
Q Consensus 13 ~~~~~~nv~~~~~G~~l~L~l~~-------~sG~~i~S--k~~~~YG~~eariKlp~g-~s~G~~~AFwl~~~------- 75 (249)
-.+.++||.+ .+|. |+|++.+ .++++|.| |+.|+||+||||||||.+ ...|+||||||+++
T Consensus 36 q~Y~~~nv~v-~~G~-L~I~a~~~~~~~~~ytSg~i~T~~k~~f~yG~~EaR~klp~~~~~~G~WPAfWmlg~~~~~~~~ 113 (295)
T cd02180 36 EWYDPDAVTT-INGS-LRITMDQFRNHGLNFRSGMLQSWNKLCFTGGYIEASASLPGKPDVSGLWPAVWTMGNLGRPGYL 113 (295)
T ss_pred EEecCcCeEe-cCCe-EEEEEEeecCCCCCEEEEEEEECCcceeeCCEEEEEEECCCCCCCCCcceeeeccccccccccc
Confidence 4567899988 5898 6777643 25688888 788999999999999973 23799999999983
Q ss_pred ------CCC------CCeEEE-EecCCCCC-CceE---E----------------EeeeeeC------C-CCCcce-E--
Q 047166 76 ------GPT------WDEIDF-EFLGNLSG-HPYT---V----------------HTNVYSQ------G-KGDREQ-Q-- 112 (249)
Q Consensus 76 ------~~~------~~EIDi-E~lG~~~g-~~~~---~----------------~tn~~~~------g-~~~~~~-~-- 112 (249)
||. ++|||| |.+|.+.. .... + |..+|.. . .++..+ .
T Consensus 114 ~~~~~~WP~~~~~~~~GEIDImE~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 193 (295)
T cd02180 114 ATTEGVWPYSYDGRGAPEIDIIEAQVGNGLGIGQVSQSLQVAPFDAWYRPDYSSDFVTIYNDTTTIMNTYTGGVFQQAIS 193 (295)
T ss_pred ccccCCCCcccccCCCCcEEEEeeecCCCCcCceEeeEEeeccccccccCCCCccceEEecCcccccccccCCccccccc
Confidence 775 499995 99985320 0011 1 1111211 0 011000 0
Q ss_pred --EEcCC----CCCCCcEEEEEEEcC-----CcEEEEECCeeEEEEeecccCC------cCCCCCCceEEEEEeeeCCCc
Q 047166 113 --FHLWF----DPAVNFHTYSVLWNP-----QRIVFSVDGIPIREFKNLEAIG------VPFPKNQPMRIYSSLWNADDW 175 (249)
Q Consensus 113 --~~l~~----d~~~dfHtY~i~Wtp-----~~I~fyVDG~~v~~~~~~~~~~------~~~P~~~Pm~l~lnlw~gg~W 175 (249)
..+.. ...++||+|+|||+| ++|+|||||+++++++...... ..+| ++||+|+||+++||+|
T Consensus 194 ~~~~~~~~~~~~~~~~fHtY~veW~~~~~~~~~I~wyvDg~~~~~~~~~~~~~~~~~~~~~~~-~~P~ylILNlAvGg~w 272 (295)
T cd02180 194 CVTRLNDSWYPGNGNEFQTYGFEYRPDDEDDGYITWFVDDEPTWTIYAKALGPNGNIGWRIIP-EEPMYIILNLGISSNF 272 (295)
T ss_pred cccccCCccccccCCCcEEEEEEEecCCCCCCEEEEEECCEEEEEEehHHcCCcccccccccC-CCCeEEEEEEEecccc
Confidence 01111 135789999999999 8999999999999998653211 2345 4999999999999999
Q ss_pred CCCCCccccCCCCCCeEEEEeEEEEe
Q 047166 176 ATRGGLIKTDWSQAPFTASYRNFKVD 201 (249)
Q Consensus 176 at~GG~~~~d~~~~P~~~~~~~~~v~ 201 (249)
+ |. +.+-...|..|+||||||.
T Consensus 273 ~---g~-~~~~~~~P~~m~VDyVRVY 294 (295)
T cd02180 273 Q---DI-DWDELQFPATMRIDYVRVY 294 (295)
T ss_pred C---CC-CcccCCCCCEEEEEEEEEE
Confidence 7 43 2245678999999999996
No 10
>cd02177 GH16_kappa_carrageenase Kappa-carrageenase, member of glycosyl hydrolase family 16. Kappa-carrageenase is a glycosyl hydrolase family 16 (GH16) member that hydrolyzes the internal beta-1,4-linkage of kappa-carrageenans, a hydrophilic polysaccharide found in the cell wall of Rhodophyceaea, marine red algae. Carrageenans are linear chains of galactose units linked by alternating D-alpha-1,3- and D-beta-1,4-linkages that are additionally modified by a 3,6-anhydro-bridge. Depending on the position and number of sulfate ester modifications they are subdivided into kappa-, iota-, and lambda-carrageenases, kappa being modified once. Carrageenans form thermo-reversible gels widely used for industrial applications. Kappa-carrageenases exist in bacteria belonging to at least three phylogenetically distant branches, including pseudoalteromonas, planctomycetes, and baceroidetes. This domain adopts a curved beta-sandwich conformation, with a tunnel-shaped active site cavity, referred to
Probab=100.00 E-value=2.5e-33 Score=248.94 Aligned_cols=170 Identities=26% Similarity=0.340 Sum_probs=127.4
Q ss_pred CCCeEEecCCcEEEEEEecC-------------------CCCeEEEccceEeEEEEEEEEecC-CCCCceEEEEEEeec-
Q 047166 17 DGRGKIFNNGQLLTLNLDRY-------------------SGSGFQSKKQHLFGKIDMQLKLVP-RNSAGTVTAYYLRSQ- 75 (249)
Q Consensus 17 ~~nv~~~~~G~~l~L~l~~~-------------------sG~~i~Sk~~~~YG~~eariKlp~-g~s~G~~~AFwl~~~- 75 (249)
++||.+ ++|+ |+|++.+. ++|.+.|+.+|+|||||||||+++ + +|+||||||+++
T Consensus 43 ~~Nv~v-~dG~-L~i~a~~e~~~~~~~~~~~~~~~~~~ytSg~~~t~~~~~YG~~EaRik~~p~~--~G~wpAfW~~~~~ 118 (269)
T cd02177 43 EKNVVI-SNGI-LELTMRRNANNTTFWDQQQVPDGPTYFTSGIFKSYAKGTYGYYEARIKGADIF--PGVCPSFWLYSDI 118 (269)
T ss_pred ccceEE-eCCE-EEEEEEeccCCCcccccccccCCCCCEeeEEEEecCcceeeEEEEEEECCCCC--CceEeEEEEeccC
Confidence 688988 5898 66776432 457889999999999999999865 5 799999999984
Q ss_pred --------CCCCCeEEE-EecCCCC---CCc----eEEEeeeeeCCCCC--c--------ceEEEcCCCCCCCcEEEEEE
Q 047166 76 --------GPTWDEIDF-EFLGNLS---GHP----YTVHTNVYSQGKGD--R--------EQQFHLWFDPAVNFHTYSVL 129 (249)
Q Consensus 76 --------~~~~~EIDi-E~lG~~~---g~~----~~~~tn~~~~g~~~--~--------~~~~~l~~d~~~dfHtY~i~ 129 (249)
||.++|||| |.+|... +.+ ..+|+.++.++.+. + ...+.+++|++++||+|+|+
T Consensus 119 ~~~~~~~gwp~~GEIDImE~~g~~~~~~~~~~~~~~~~H~~~~~~g~g~w~~~~~~~~~~~~~~~~~~d~~~~fH~y~v~ 198 (269)
T cd02177 119 DYSVANEGEVVYSEIDVVELQQFDWYHQDDIRDMDHNLHAIVKENGQGVWKRPKMYPPTEQLNYHRPFDPSKDFHTYGCN 198 (269)
T ss_pred CCCcccCCCCCCCeEEEEEEecCCccccccccccceEEEEeEecCCcccccCccccccccceEEccCCCCccCcEEEEEE
Confidence 688999996 8887531 122 24666555444321 1 12355677889999999999
Q ss_pred EcCCcEEEEECCeeEEEEeecccCCcCCCCCCceEEEEEeeeCC---------CcCCCCCccccCCCCCCeEEEEeEEEE
Q 047166 130 WNPQRIVFSVDGIPIREFKNLEAIGVPFPKNQPMRIYSSLWNAD---------DWATRGGLIKTDWSQAPFTASYRNFKV 200 (249)
Q Consensus 130 Wtp~~I~fyVDG~~v~~~~~~~~~~~~~P~~~Pm~l~lnlw~gg---------~Wat~GG~~~~d~~~~P~~~~~~~~~v 200 (249)
|+|++|+|||||++++++.+. +.. .||+|.+++-.+. .|+ |+.. +-+.+|..|+||||||
T Consensus 199 W~~~~i~~yvDg~~~~~~~~~------~w~-~~~~~~~~~~~~~p~~~~~~~~~~~--~~~~--~~~~fP~~m~VDyVRv 267 (269)
T cd02177 199 VNQDEIIWYVDGVEVGRKPNK------YWH-RPMNVTLSLGLRKPFVKFFDNKNNA--KARE--KASDFPTSMYVDYVRV 267 (269)
T ss_pred EeCCEEEEEECCEEEEEEcCC------ccc-cccEEeeccccCcchhhhhccccCC--CCCC--ccCcCCceEEEEEEEE
Confidence 999999999999999998643 333 7888888875543 354 4432 4567899999999999
Q ss_pred e
Q 047166 201 D 201 (249)
Q Consensus 201 ~ 201 (249)
.
T Consensus 268 ~ 268 (269)
T cd02177 268 W 268 (269)
T ss_pred e
Confidence 4
No 11
>cd02182 GH16_Strep_laminarinase_like Streptomyces laminarinase-like, member of glycosyl hydrolase family 16. Proteins similar to Streptomyces sioyaensis beta-1,3-glucanase (laminarinase) present in Actinomycetales as well as Peziomycotina. Laminarinases belong to glycosyl hydrolase family 16 and hydrolyze the glycosidic bond of the 1,3-beta-linked glucan, a major component of fungal and plant cell walls and the structural and storage polysaccharides (laminarin) of marine macro-algae. Members of the GH16 family have a conserved jelly roll fold with an active site channel.
Probab=100.00 E-value=4.2e-33 Score=246.83 Aligned_cols=180 Identities=16% Similarity=0.163 Sum_probs=126.4
Q ss_pred eecCCCeEEecCCcEEEEEEecC-----CCCeEEEccce--Ee----EEEEEEEEecCCC---CCceEEEEEEeec----
Q 047166 14 TWGDGRGKIFNNGQLLTLNLDRY-----SGSGFQSKKQH--LF----GKIDMQLKLVPRN---SAGTVTAYYLRSQ---- 75 (249)
Q Consensus 14 ~~~~~nv~~~~~G~~l~L~l~~~-----sG~~i~Sk~~~--~Y----G~~eariKlp~g~---s~G~~~AFwl~~~---- 75 (249)
+.+++||.+.++|+ |+|++.+. ++++|.|+..+ .| |+||||||+|.+. ..|+||||||++.
T Consensus 42 ~~~~~n~~v~~dG~-L~I~a~~~~~~~ytSg~i~s~~~~~~~~~gg~~~~EaRik~p~~~~~~~~G~wPAfWll~~~~~~ 120 (259)
T cd02182 42 TNSTANVQLSGNGT-LQITPLRDGSGKWTSGRIETTRTDFAAPPGGKLRVEASIRLGDVPGSNQQGIWPAFWMLGDSYRG 120 (259)
T ss_pred cCCCcCEEEcCCCe-EEEEEEecCCCCEEEEEEEECCccccccCCCcEEEEEEEECCCCcccCCCCcCeeeeccCCCccC
Confidence 45689999965898 77777543 45788886554 33 4899999999741 3699999999984
Q ss_pred ----CCCCCeEEE-EecCCCCCCceEEEeeeeeCC-CC--Ccce-EEE-cCCCCCCCcEEEEEEEcC-----CcEEEEEC
Q 047166 76 ----GPTWDEIDF-EFLGNLSGHPYTVHTNVYSQG-KG--DREQ-QFH-LWFDPAVNFHTYSVLWNP-----QRIVFSVD 140 (249)
Q Consensus 76 ----~~~~~EIDi-E~lG~~~g~~~~~~tn~~~~g-~~--~~~~-~~~-l~~d~~~dfHtY~i~Wtp-----~~I~fyVD 140 (249)
||..+|||| |..|.. +. ++.++|... .+ .... ... ......++||+|+|+|+| ++|+||||
T Consensus 121 ~~~~WP~~GEIDImE~~~~~---~~-~~~t~H~~~~~~~~~~~~~~~~~~~~~~~~~fHtY~veW~~~~~~~~~I~~yvD 196 (259)
T cd02182 121 NGTNWPACGELDIMENVNGL---ST-GYGTLHCGVAPGGPCNEPTGIGAGTRLCDTGFHTYAVEIDRTNGDAESIRWYLD 196 (259)
T ss_pred CCCCCCccceeeeeeccCCC---Cc-eEEEEeeCCCCCCCCccccCcccCCCCCCCCcEEEEEEEccCCCCCCEEEEEEC
Confidence 788999995 999864 22 333444322 11 1111 111 011245799999999997 99999999
Q ss_pred CeeEEEEeecccC---CcCCCCCCceEEEEEeeeCCCcCCCCCccc-cCCCCCCeEEEEeEEEEe
Q 047166 141 GIPIREFKNLEAI---GVPFPKNQPMRIYSSLWNADDWATRGGLIK-TDWSQAPFTASYRNFKVD 201 (249)
Q Consensus 141 G~~v~~~~~~~~~---~~~~P~~~Pm~l~lnlw~gg~Wat~GG~~~-~d~~~~P~~~~~~~~~v~ 201 (249)
|+++++++..... ..+.|+++||+|+||+++||+|+ |... ......|..|+||||||.
T Consensus 197 G~~~~t~~~~~~~~~~~~~~~~~~p~ylIlN~avgg~w~---~~~~~~~~~~~p~~m~VDyVRVy 258 (259)
T cd02182 197 GVVYHTVTGARVGDETTWQALAHHPLFIILNVAVGGNWP---GAPNGNTATGSGSAMEVDYVAVY 258 (259)
T ss_pred CEEEEEEehhhcCCCccccCcCCCCeEEEEEEEEeCCcC---CCCCcccccCCCceEEEEEEEEe
Confidence 9999999864221 11234469999999999999998 3321 112356999999999995
No 12
>cd02179 GH16_beta_GRP beta-1,3-glucan recognition protein, member of glycosyl hydrolase family 16. Beta-GRP (beta-1,3-glucan recognition protein) is one of several pattern recognition receptors (PRRs), also referred to as biosensor proteins, that complexes with pathogen-associated beta-1,3-glucans and then transduces signals necessary for activation of an appropriate innate immune response. They are present in insects and lack all catalytic residues. This subgroup also contains related proteins of unknown function that still contain the active site. Their structures adopt a jelly roll fold with a deep active site channel harboring the catalytic residues, like those of other glycosyl hydrolase family 16 members.
Probab=100.00 E-value=2e-32 Score=249.04 Aligned_cols=134 Identities=16% Similarity=0.125 Sum_probs=99.3
Q ss_pred CCeEEE--ccceEeEEEEEEEEecCCCCCceEEEEEEeec------C-CCCCeEEE-EecCCCCCC-------ceEEEee
Q 047166 38 GSGFQS--KKQHLFGKIDMQLKLVPRNSAGTVTAYYLRSQ------G-PTWDEIDF-EFLGNLSGH-------PYTVHTN 100 (249)
Q Consensus 38 G~~i~S--k~~~~YG~~eariKlp~g~s~G~~~AFwl~~~------~-~~~~EIDi-E~lG~~~g~-------~~~~~tn 100 (249)
+|+|.| +++|+|||+|||||||.| .|+||||||++. | |.++|||| |.+|+..-. ...+|..
T Consensus 98 Sari~Tk~~f~f~YGrvEvRAKlP~G--dglWPAiWmlP~~~~yg~w~P~sGEIDImE~~Gn~~~~~~g~~~~~~~l~~g 175 (321)
T cd02179 98 SARINTKNSFAFKYGRVEIRAKLPKG--DWIYPELLLEPVNNYYGSSDYASGQIRIAFARGNAVLRADGTDIGGKKLYGG 175 (321)
T ss_pred eeeEEECCcEeEeccEEEEEEEccCC--CCcccceeecccccccCCCCCCCCeEEEEEeCCCCccccCCceeccceEEcc
Confidence 467777 578999999999999999 799999999986 4 78999996 999985210 0133333
Q ss_pred eeeCCCC-Ccc---eEEEcCCCCCCCcEEEEEEEcCCcEEEEECCeeEEEEeeccc----------------CCcCCCCC
Q 047166 101 VYSQGKG-DRE---QQFHLWFDPAVNFHTYSVLWNPQRIVFSVDGIPIREFKNLEA----------------IGVPFPKN 160 (249)
Q Consensus 101 ~~~~g~~-~~~---~~~~l~~d~~~dfHtY~i~Wtp~~I~fyVDG~~v~~~~~~~~----------------~~~~~P~~ 160 (249)
.+..... .+. .......+.+++||+|+|+|+|++|+|||||+++++++.... ....+|++
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~ddFHtY~leWtpd~I~f~VDg~~~~~~~~~~~~~~~~~~~~~~~~w~~g~~~aPFD 255 (321)
T cd02179 176 PVLTDAEPHRSANLKTKINNELWSDDFHVYTLEWKPDGITLMVDGEEYGEIEPGEGGYSEAANNPAASRWLGGTVMAPFD 255 (321)
T ss_pred cccCCCcccccccccccCCCCccccCcEEEEEEEeCCEEEEEECCEEEEEEecCcCccccccccccCccccccCccCCCC
Confidence 3321111 111 111122456799999999999999999999999999986321 12347999
Q ss_pred CceEEEEEeeeCC
Q 047166 161 QPMRIYSSLWNAD 173 (249)
Q Consensus 161 ~Pm~l~lnlw~gg 173 (249)
+|+||+|||++||
T Consensus 256 ~~FyliLNlAVGG 268 (321)
T cd02179 256 KEFYLSLGVGVGG 268 (321)
T ss_pred CCeEEEEEEEecC
Confidence 9999999999998
No 13
>cd08024 GH16_CCF Coelomic cytolytic factor, member of glycosyl hydrolase family 16. Subgroup of glucanases of unknown function that are related to beta-GRP (beta-1,3-glucan recognition protein), but contain active site residues. Beta-GRPs are one group of pattern recognition receptors (PRRs), also referred to as biosensor proteins, that complexes with pathogen-associated beta-1,3-glucans and then transduces signals necessary for activation of an appropriate innate immune response. Beta-GRPs are present in insects and lack all catalytic residues. This subgroup contains related proteins that still contain the active site and are widely distributed in eukaryotes. Their structures adopt a jelly roll fold with a deep active site channel harboring the catalytic residues, like those of other glycosyl hydrolase family 16 members.
Probab=100.00 E-value=7.2e-32 Score=246.38 Aligned_cols=137 Identities=20% Similarity=0.206 Sum_probs=105.1
Q ss_pred CCeEEE--ccceEeEEEEEEEEecCCCCCceEEEEEEeec------CCCCCeEEE-EecCCCCCCc-------eEEEeee
Q 047166 38 GSGFQS--KKQHLFGKIDMQLKLVPRNSAGTVTAYYLRSQ------GPTWDEIDF-EFLGNLSGHP-------YTVHTNV 101 (249)
Q Consensus 38 G~~i~S--k~~~~YG~~eariKlp~g~s~G~~~AFwl~~~------~~~~~EIDi-E~lG~~~g~~-------~~~~tn~ 101 (249)
+|+|.| |++|+|||||||||||.+ .|+||||||++. ||.++|||| |.+|+....+ ..++.++
T Consensus 101 Sgri~T~~kf~f~YGrvE~RaKlP~G--~g~WPAfWmlp~~~~yg~WP~sGEIDImE~~Gn~~~~~~~~~~g~~~v~~tl 178 (330)
T cd08024 101 SARLRTKNSFSFKYGRVEVRAKLPTG--DWLWPAIWMLPRDNVYGGWPRSGEIDIMESRGNRPLYDGGEAIGINSVGSTL 178 (330)
T ss_pred EEEEEeCCccceeceEEEEEEECCCC--CccceeeeecCCccccCCCCCCCcEEEEEEeCCCcccccccccCcceEEEEE
Confidence 466777 688999999999999998 799999999985 789999995 9999753221 2456666
Q ss_pred eeCCCCC----cc---eEEEcCCCCCCCcEEEEEEEcCCcEEEEECCeeEEEEeecc-------------------cCCc
Q 047166 102 YSQGKGD----RE---QQFHLWFDPAVNFHTYSVLWNPQRIVFSVDGIPIREFKNLE-------------------AIGV 155 (249)
Q Consensus 102 ~~~g~~~----~~---~~~~l~~d~~~dfHtY~i~Wtp~~I~fyVDG~~v~~~~~~~-------------------~~~~ 155 (249)
|...... +. .......+.+++||+|+|+|+|++|+|||||+++++++... ....
T Consensus 179 H~g~~~~~~~~~~~~~~~~~~~~~~~~~FHtY~veWtpd~I~fyVDG~~~~~v~~~~~~~w~~g~~~~~~~~~~w~~~~~ 258 (330)
T cd08024 179 HWGPDPGQNRYTKTTGKRSDSGGDFADDFHTYGLDWTPDHIRFYVDDRLILTLDVPGQGFWEFGGFSGTPIDNPWAGGGK 258 (330)
T ss_pred EeCCCCCCCccccccceeccCCCCcccCCEEEEEEEeCCEEEEEECCEEEEEEecCCCCceeeccccccccCCcccccCc
Confidence 6432211 11 11122345678999999999999999999999999998621 0124
Q ss_pred CCCCCCceEEEEEeeeCCCcC
Q 047166 156 PFPKNQPMRIYSSLWNADDWA 176 (249)
Q Consensus 156 ~~P~~~Pm~l~lnlw~gg~Wa 176 (249)
.+|+++|+||+|||++||.|.
T Consensus 259 ~aPFd~~fyliLNvAVGG~~~ 279 (330)
T cd08024 259 MAPFDQEFYLILNVAVGGTNG 279 (330)
T ss_pred CCCCCCCEEEEEEEEecCCCC
Confidence 579999999999999999875
No 14
>COG2273 SKN1 Beta-glucanase/Beta-glucan synthetase [Carbohydrate transport and metabolism]
Probab=99.94 E-value=3.5e-26 Score=209.97 Aligned_cols=179 Identities=25% Similarity=0.381 Sum_probs=142.3
Q ss_pred ccceeeecCCCeEEecCCcEEEEEEec-------CCCCeEEEccc--eEeEEEEEEEEecCCCCCceEEEEEEeec----
Q 047166 9 EEFDITWGDGRGKIFNNGQLLTLNLDR-------YSGSGFQSKKQ--HLFGKIDMQLKLVPRNSAGTVTAYYLRSQ---- 75 (249)
Q Consensus 9 ~~~~~~~~~~nv~~~~~G~~l~L~l~~-------~sG~~i~Sk~~--~~YG~~eariKlp~g~s~G~~~AFwl~~~---- 75 (249)
...+.+|..+|+.+..+|. |.|.+++ +++++++|..+ |+||++|+|||+|.+ .|+||||||++.
T Consensus 70 ~~~~~~w~~~~~~lt~~~~-l~l~~~~~~~~~~~y~sG~l~T~~r~~~~YG~~Evrak~~~~--~G~wpafw~~~g~~~d 146 (355)
T COG2273 70 ATKNLTWYVSNVVLTIGGT-LELDIEKFKINDRDYRSGMLTTYNRFCFTYGTYEVRAKLPLV--SGLWPAFWTLTGLSRD 146 (355)
T ss_pred cccccceeecceeEeeCCe-eeeeechhcccccccccceEEecCcceEeeeEEEEEeccCCC--cccceeeEeccCcccC
Confidence 3566789999999976665 7787753 46788998766 999999999999977 899999999984
Q ss_pred CCCCCeEEEEecCCCCCCceEEEeeeeeCCCCCcceEEEcCC-CCCCCcEEEEEEEcCCcEEEEECCeeEEEEeecccCC
Q 047166 76 GPTWDEIDFEFLGNLSGHPYTVHTNVYSQGKGDREQQFHLWF-DPAVNFHTYSVLWNPQRIVFSVDGIPIREFKNLEAIG 154 (249)
Q Consensus 76 ~~~~~EIDiE~lG~~~g~~~~~~tn~~~~g~~~~~~~~~l~~-d~~~dfHtY~i~Wtp~~I~fyVDG~~v~~~~~~~~~~ 154 (249)
....+|||||++|+.+. +..+++|.+.++.++.+....+.+ +..++||+|+++|.++.|+|||||++++++...
T Consensus 147 g~wp~e~d~e~lgg~~~-~~~i~t~~~~~~~~~~~~~~~~~~~~~~~~fhty~~~W~~~~i~Wyvdg~~~~~~~~p---- 221 (355)
T COG2273 147 GGWPDEIDIEDLGGQST-NTVIQTNHYQGGGGGTSKLVDHPNPDAIDGFHTYAFLWGEDSISWYVDGAPVATATKP---- 221 (355)
T ss_pred CCCCcceeeeeecCCCc-ccceEeeeeccCCCCceecccccCCCcccccccceeeccCCeEEEEEcceEeeEEecc----
Confidence 23458999999997643 346999999988887776667777 888999999999999999999999999999864
Q ss_pred cCCCCCCceEEEEEeeeCCCcCCCCCccccCCCCCCeEEEEeEEEE
Q 047166 155 VPFPKNQPMRIYSSLWNADDWATRGGLIKTDWSQAPFTASYRNFKV 200 (249)
Q Consensus 155 ~~~P~~~Pm~l~lnlw~gg~Wat~GG~~~~d~~~~P~~~~~~~~~v 200 (249)
...|+ .||++++|+|.++.+. |... .+..++-.+.++++++
T Consensus 222 ~~~~~-~p~y~~~nl~~~~~~~---~~~~-~~~~~~~~~~~~~~~~ 262 (355)
T COG2273 222 DYIPQ-IPFYVLVNLWMGGYAG---GPPG-EALSAGSPLNIDYYRV 262 (355)
T ss_pred ccCcC-CcceeEEeecccCccC---CCcc-ccccCCcceEeeeeee
Confidence 34587 8999999999998654 4321 3344444556666664
No 15
>PF03935 SKN1: Beta-glucan synthesis-associated protein (SKN1); InterPro: IPR005629 This family consists of the beta-glucan synthesis-associated proteins KRE6 and SKN1. Beta1,6-Glucan is a key component of the yeast cell wall, interconnecting cell wall proteins, beta1,3-glucan, and chitin. It has been postulated that the synthesis of beta1,6-glucan begins in the endoplasmic reticulum with the formation of protein-bound primer structures and that these primer structures are extended in the Golgi complex by two putative glucosyltransferases that are functionally redundant, Kre6 and Skn1. This is followed by maturation steps at the cell surface and by coupling to other cell wall macromolecules [].
Probab=99.78 E-value=1.9e-18 Score=163.21 Aligned_cols=179 Identities=25% Similarity=0.338 Sum_probs=122.0
Q ss_pred ecCCCeEEecCCcEEEEEEecC-------CCCeEEE--ccceEeEEEEEEEEecCC-CCCceEEEEEEeec---------
Q 047166 15 WGDGRGKIFNNGQLLTLNLDRY-------SGSGFQS--KKQHLFGKIDMQLKLVPR-NSAGTVTAYYLRSQ--------- 75 (249)
Q Consensus 15 ~~~~nv~~~~~G~~l~L~l~~~-------sG~~i~S--k~~~~YG~~eariKlp~g-~s~G~~~AFwl~~~--------- 75 (249)
++|+.|.. ++|. |+|++++. .++.++| |+-|+-|++|++++||.. +..|+|||||++++
T Consensus 158 Y~p~~vtt-~~G~-l~i~~~~~~~~~~~y~sgm~qsWNkfCftgG~~e~~~~lPg~~~~~G~WP~~W~mGNLgRagy~as 235 (504)
T PF03935_consen 158 YDPDAVTT-ENGS-LVITLDAFPNHNLNYRSGMLQSWNKFCFTGGYIEVSASLPGSPDVSGLWPAFWTMGNLGRAGYGAS 235 (504)
T ss_pred ecCCCcEe-eCCE-EEEEEEeeeccceeEecchhhhhhhhhcCCcEEEEEEECCCCCcCCCcCchhhhccccCccccccc
Confidence 45788866 6887 78888643 3567777 788999999999999854 36899999999974
Q ss_pred ----CC---------------------------------------------CCCeEE-EEecCCCC-CCce---EEEee-
Q 047166 76 ----GP---------------------------------------------TWDEID-FEFLGNLS-GHPY---TVHTN- 100 (249)
Q Consensus 76 ----~~---------------------------------------------~~~EID-iE~lG~~~-g~~~---~~~tn- 100 (249)
|| ...||| ||...... +... .+|..
T Consensus 236 t~g~WPySYd~Cd~g~~~nQt~~~glS~lpgqrlsaCtc~gedhp~p~~GRgAPEIDilE~~~~~~~~~g~~SqS~Q~AP 315 (504)
T PF03935_consen 236 TDGMWPYSYDSCDVGTTPNQTSPDGLSYLPGQRLSACTCPGEDHPGPGVGRGAPEIDILEAQVGAGPGVGVVSQSLQVAP 315 (504)
T ss_pred cCceecccccccCcccccCccccCccccCCCCcCcCCCCCCCcCCCCCCCCCCCceeEEeeeecccccccccccceeecc
Confidence 21 124999 48753321 0000 11111
Q ss_pred -------------eeeCCC-------CCc-ceEE----EcCCC-----CCCCcEEEEEEEcCC-----cEEEEECCeeEE
Q 047166 101 -------------VYSQGK-------GDR-EQQF----HLWFD-----PAVNFHTYSVLWNPQ-----RIVFSVDGIPIR 145 (249)
Q Consensus 101 -------------~~~~g~-------~~~-~~~~----~l~~d-----~~~dfHtY~i~Wtp~-----~I~fyVDG~~v~ 145 (249)
+|.... |+. .+.+ .+..+ ...+||+|+|||.|. .|+|+|||++++
T Consensus 316 ~d~~y~~~~~~~~i~~~~~T~~N~Y~Gg~~QqAiSa~t~ln~~~Y~~~~~~~f~~YgfEy~Pg~~~~GYItW~vdg~~tw 395 (504)
T PF03935_consen 316 FDIWYRPDYDFYEIYNPSITQMNTYTGGVYQQAISALTQLNNDWYEEEDGGCFQTYGFEYKPGDGDDGYITWFVDGEPTW 395 (504)
T ss_pred cccCCCCCCCceEEeCCCCceeccccChhhhhhhhcCcccCccccccCCCCceEEEEEEEEeCCCCCeEEEEEECCEEEE
Confidence 010000 000 0111 11112 237899999999874 899999999999
Q ss_pred EEeecccC------CcCCCCCCceEEEEEeeeCCCcCCCCCccccCCC--CCCeEEEEeEEEEec
Q 047166 146 EFKNLEAI------GVPFPKNQPMRIYSSLWNADDWATRGGLIKTDWS--QAPFTASYRNFKVDG 202 (249)
Q Consensus 146 ~~~~~~~~------~~~~P~~~Pm~l~lnlw~gg~Wat~GG~~~~d~~--~~P~~~~~~~~~v~~ 202 (249)
++...... ...+|. .||+|+|||....+|+ . +|+. ..|..|.||||||..
T Consensus 396 ti~a~Al~~~~~I~~R~Ip~-EPMyIIlNlgmS~sf~----~--vd~~~L~FP~~M~IDYVRVYQ 453 (504)
T PF03935_consen 396 TINAEALGPNPNIGQRPIPE-EPMYIILNLGMSSSFG----Y--VDWNHLCFPATMRIDYVRVYQ 453 (504)
T ss_pred EEEhhhcCCCCCcCccccCc-CCceeeeccccccccC----c--cccccccccceEEEeEEEEec
Confidence 99876432 245887 9999999999999995 3 3665 579999999999987
No 16
>PF06955 XET_C: Xyloglucan endo-transglycosylase (XET) C-terminus; InterPro: IPR010713 This entry represents the C terminus (approximately 60 residues) of plant xyloglucan endo-transglycosylase (XET). Xyloglucan is the predominant hemicellulose in the cell walls of most dicotyledons. With cellulose, it forms a network that strengthens the cell wall. XET catalyses the splitting of xyloglucan chains and the linking of the newly generated reducing end to the non-reducing end of another xyloglucan chain, thereby loosening the cell wall []. ; GO: 0016762 xyloglucan:xyloglucosyl transferase activity, 0006073 cellular glucan metabolic process, 0005618 cell wall, 0048046 apoplast; PDB: 1UMZ_A 1UN1_B 2VH9_B 2UWC_A 2UWB_B 2UWA_C.
Probab=99.75 E-value=6.1e-19 Score=118.69 Aligned_cols=43 Identities=51% Similarity=1.164 Sum_probs=36.2
Q ss_pred CchhccC---CCHHHHHHHHHHhhCCeeeecccCCCCCCCCCCCCC
Q 047166 204 RAWLLQQ---MDSTNQRRLYWVRKNHMIYNYCTDTKRFPQGFPKEC 246 (249)
Q Consensus 204 ~~~~~~~---~~~~~~~~~~~~~~~~~~y~yc~d~~r~~~~~~~ec 246 (249)
..||++. |+++|+++|+|||+||||||||.|++|||.++|+||
T Consensus 6 ~~w~~~~~~~L~~~q~~~m~wvr~~ymiYdYC~D~~Rfp~~~P~EC 51 (51)
T PF06955_consen 6 KSWWNQPYAQLSAKQRRQMRWVRRNYMIYDYCTDTKRFPNPLPPEC 51 (51)
T ss_dssp TSGGCSCCCS--HHHHHHHHHHHHHCEEEEGGG-TTT-SGCGSTTH
T ss_pred cccccCcccCCCHHHHHHHHHHHHcCeEecccCCCCcCCCCCCCCC
Confidence 4688875 999999999999999999999999999998789999
No 17
>cd02181 GH16_fungal_Lam16A_glucanase fungal 1,3(4)-beta-D-glucanases, similar to Phanerochaete chrysosporium laminarinase 16A. Group of fungal 1,3(4)-beta-D-glucanases, similar to Phanerochaete chrysosporium laminarinase 16A. Lam16A belongs to the 'nonspecific' 1,3(4)-beta-glucanase subfamily, although beta-1,6 branching and beta-1,4 bonds specifically define where Lam16A hydrolyzes its substrates, like curdlan (beta-1,3-glucan), lichenin (beta-1,3-1,4-mixed linkage glucan), and laminarin (beta-1,6-branched-1,3-glucan).
Probab=99.67 E-value=8.7e-16 Score=137.16 Aligned_cols=155 Identities=21% Similarity=0.258 Sum_probs=99.9
Q ss_pred CCCeEEecCCcEEEEEEecCC---------CCeEEEccceEeEEEEEEE-EecCCCCCceEEEEEEeec-CCCCCeEEE-
Q 047166 17 DGRGKIFNNGQLLTLNLDRYS---------GSGFQSKKQHLFGKIDMQL-KLVPRNSAGTVTAYYLRSQ-GPTWDEIDF- 84 (249)
Q Consensus 17 ~~nv~~~~~G~~l~L~l~~~s---------G~~i~Sk~~~~YG~~eari-Klp~g~s~G~~~AFwl~~~-~~~~~EIDi- 84 (249)
.+.+.+ ++|. |.|.++..+ +++|.||..|.+|++|+|+ |||.+ .|+||||||++. ||..+||||
T Consensus 41 ~gL~~v-~~g~-l~i~vd~t~~~~~~~gr~S~ri~sk~~f~~g~~~~~~~~~P~g--~G~WPAfW~~g~~WP~~GEIDIm 116 (293)
T cd02181 41 LGLAYV-NSGN-VYLGVDSTTTLPSGAGRNSVRIESKKTYNTGLFIADIAHMPGG--CGTWPAFWTVGPNWPNGGEIDII 116 (293)
T ss_pred CCCeEe-eCCe-EEEEEeceeccCCCCCceEEEEEEeceeecceEEEEhhhCCCC--CCccchhhhcCCCCCCCCcEEEE
Confidence 344555 4676 778886532 4679999999999999997 99998 899999999987 999999995
Q ss_pred EecCCCCCCceEEEeee----eeCC--CC-------------Ccc--------eEEEcCCCCCCCcEEEEEEEcCCcEEE
Q 047166 85 EFLGNLSGHPYTVHTNV----YSQG--KG-------------DRE--------QQFHLWFDPAVNFHTYSVLWNPQRIVF 137 (249)
Q Consensus 85 E~lG~~~g~~~~~~tn~----~~~g--~~-------------~~~--------~~~~l~~d~~~dfHtY~i~Wtp~~I~f 137 (249)
|.++..+....++|+.- -..+ .+ +.+ ..+-.+|+. .+=-+|++||+.+.|+.
T Consensus 117 E~vn~~~~n~~tlHt~~gC~i~~~~~~tg~~~~~nC~~~~~~n~GC~v~~~~~~syG~~FN~-~GGGvyA~ew~~~~I~v 195 (293)
T cd02181 117 EGVNLQTSNQMTLHTGPGCTISNSGSFTGTVTTTNCDVNQNGNAGCGVTSTSTNSYGAGFNA-AGGGVYAMEWTSDGIKV 195 (293)
T ss_pred eccCCCCceEEEEecCCCEEcCCCCCccCcccCCCcCCCCCCCCCceeecCCCCcccccccc-CCCcEEEEEEccCcEEE
Confidence 99986433333455431 0000 00 011 112223333 23379999999999986
Q ss_pred EECC--eeEEEEeecccCC-------cCCCC--------CCceEEEEEeeeCCCcC
Q 047166 138 SVDG--IPIREFKNLEAIG-------VPFPK--------NQPMRIYSSLWNADDWA 176 (249)
Q Consensus 138 yVDG--~~v~~~~~~~~~~-------~~~P~--------~~Pm~l~lnlw~gg~Wa 176 (249)
+.-- ..-..++.....+ ..||. =++++|++|+-.-|+||
T Consensus 196 Wff~R~~iP~di~~~~pdPs~WG~P~A~f~~~~Cdi~~~F~~~~iVfn~tfCGdwA 251 (293)
T cd02181 196 WFFPRGSIPADITSGSPDPSTWGTPAASFPGSSCDIDSFFKDQRIVFDTTFCGDWA 251 (293)
T ss_pred EEecCCCCCcccccCCCCCcccCcccccCCCCCCChhHhcccCEEEEEeecccccc
Confidence 5522 1112222211111 22442 07899999999999999
No 18
>PF13385 Laminin_G_3: Concanavalin A-like lectin/glucanases superfamily; PDB: 4DQA_A 1N1Y_A 1MZ6_A 1MZ5_A 1N1S_A 2A75_A 1WCS_A 1N1T_A 1N1V_A 2FHR_A ....
Probab=96.34 E-value=0.17 Score=39.36 Aligned_cols=74 Identities=9% Similarity=0.230 Sum_probs=43.7
Q ss_pred CCCcEEEEEEEcCCcEEEEECCeeEEEEeecccCCcCCCCCCceEEEEEeeeCCCcCCCCCccccCCCCCCeEEEEeEEE
Q 047166 120 AVNFHTYSVLWNPQRIVFSVDGIPIREFKNLEAIGVPFPKNQPMRIYSSLWNADDWATRGGLIKTDWSQAPFTASYRNFK 199 (249)
Q Consensus 120 ~~dfHtY~i~Wtp~~I~fyVDG~~v~~~~~~~~~~~~~P~~~Pm~l~lnlw~gg~Wat~GG~~~~d~~~~P~~~~~~~~~ 199 (249)
...||..++-|....+++||||+++.+...... ...+...++. +|+.. ....+|...++.+|
T Consensus 84 ~~~W~~l~~~~~~~~~~lyvnG~~~~~~~~~~~--~~~~~~~~~~------iG~~~----------~~~~~~~g~i~~~~ 145 (157)
T PF13385_consen 84 DNKWHHLALTYDGSTVTLYVNGELVGSSTIPSN--ISLNSNGPLF------IGGSG----------GGSSPFNGYIDDLR 145 (157)
T ss_dssp TT-EEEEEEEEETTEEEEEETTEEETTCTEESS--SSTTSCCEEE------ESS-S----------TT--B-EEEEEEEE
T ss_pred CCCEEEEEEEEECCeEEEEECCEEEEeEeccCC--cCCCCcceEE------EeecC----------CCCCceEEEEEEEE
Confidence 478999999999999999999998866433211 0111112222 23221 12468999999999
Q ss_pred EecCCchhccCCCHHHHH
Q 047166 200 VDGSRAWLLQQMDSTNQR 217 (249)
Q Consensus 200 v~~~~~~~~~~~~~~~~~ 217 (249)
| |+..||++|++
T Consensus 146 i------~~~aLt~~eI~ 157 (157)
T PF13385_consen 146 I------YNRALTAEEIQ 157 (157)
T ss_dssp E------ESS---HHHHH
T ss_pred E------ECccCCHHHcC
Confidence 8 44678888864
No 19
>cd00152 PTX Pentraxins are plasma proteins characterized by their pentameric discoid assembly and their Ca2+ dependent ligand binding, such as Serum amyloid P component (SAP) and C-reactive Protein (CRP), which are cytokine-inducible acute-phase proteins implicated in innate immunity. CRP binds to ligands containing phosphocholine, SAP binds to amyloid fibrils, DNA, chromatin, fibronectin, C4-binding proteins and glycosaminoglycans. "Long" pentraxins have N-terminal extensions to the common pentraxin domain; one group, the neuronal pentraxins, may be involved in synapse formation and remodeling, and they may also be able to form heteromultimers.
Probab=93.25 E-value=4.6 Score=34.18 Aligned_cols=86 Identities=16% Similarity=0.216 Sum_probs=54.7
Q ss_pred CCCCcEEEEEEEc--CCcEEEEECCeeEEEEeecccCCcCCCCCCceEEEEEeeeCCCcCCCCCccccCCCCCCeEEEEe
Q 047166 119 PAVNFHTYSVLWN--PQRIVFSVDGIPIREFKNLEAIGVPFPKNQPMRIYSSLWNADDWATRGGLIKTDWSQAPFTASYR 196 (249)
Q Consensus 119 ~~~dfHtY~i~Wt--p~~I~fyVDG~~v~~~~~~~~~~~~~P~~~Pm~l~lnlw~gg~Wat~GG~~~~d~~~~P~~~~~~ 196 (249)
....||...+.|+ ...+.+||||+++.+-. . ..+..++. ...|+|.--- ... ||.. + ..-.|.-.++
T Consensus 88 ~~g~W~hv~~t~d~~~g~~~lyvnG~~~~~~~-~-~~~~~~~~--~g~l~lG~~q-~~~---gg~~--~-~~~~f~G~I~ 156 (201)
T cd00152 88 SDGAWHHICVTWESTSGIAELWVNGKLSVRKS-L-KKGYTVGP--GGSIILGQEQ-DSY---GGGF--D-ATQSFVGEIS 156 (201)
T ss_pred CCCCEEEEEEEEECCCCcEEEEECCEEecccc-c-cCCCEECC--CCeEEEeecc-cCC---CCCC--C-CCcceEEEEc
Confidence 4678999999997 45699999999875432 1 11222332 2234333210 111 3432 3 2347999999
Q ss_pred EEEEecCCchhccCCCHHHHHHHHH
Q 047166 197 NFKVDGSRAWLLQQMDSTNQRRLYW 221 (249)
Q Consensus 197 ~~~v~~~~~~~~~~~~~~~~~~~~~ 221 (249)
.|+| |+..|+++|+++|..
T Consensus 157 ~v~i------w~~~Ls~~eI~~l~~ 175 (201)
T cd00152 157 DVNM------WDSVLSPEEIKNVYS 175 (201)
T ss_pred eeEE------EcccCCHHHHHHHHh
Confidence 9998 667899999998753
No 20
>smart00159 PTX Pentraxin / C-reactive protein / pentaxin family. This family form a doscoid pentameric structure. Human serum amyloid P demonstrates calcium-mediated ligand-binding.
Probab=92.13 E-value=6.7 Score=33.34 Aligned_cols=86 Identities=19% Similarity=0.260 Sum_probs=54.8
Q ss_pred CCCCcEEEEEEEc--CCcEEEEECCeeEEEEeecccCCcCCCCCCceEEEEEeeeCCCcCCCCCccccCCCCCCeEEEEe
Q 047166 119 PAVNFHTYSVLWN--PQRIVFSVDGIPIREFKNLEAIGVPFPKNQPMRIYSSLWNADDWATRGGLIKTDWSQAPFTASYR 196 (249)
Q Consensus 119 ~~~dfHtY~i~Wt--p~~I~fyVDG~~v~~~~~~~~~~~~~P~~~Pm~l~lnlw~gg~Wat~GG~~~~d~~~~P~~~~~~ 196 (249)
....||...+.|+ ...+.+||||+++.. . .-..+..++ ..-.|+|.. ..+.+ ||.. + ....|.-.++
T Consensus 88 ~~g~W~hvc~tw~~~~g~~~lyvnG~~~~~-~-~~~~g~~i~--~~G~lvlGq-~qd~~---gg~f--~-~~~~f~G~i~ 156 (206)
T smart00159 88 SDGKWHHICTTWESSSGIAELWVDGKPGVR-K-GLAKGYTVK--PGGSIILGQ-EQDSY---GGGF--D-ATQSFVGEIG 156 (206)
T ss_pred cCCceEEEEEEEECCCCcEEEEECCEEccc-c-cccCCcEEC--CCCEEEEEe-cccCC---CCCC--C-CCcceeEEEe
Confidence 3578999999997 456999999998621 1 111122233 233444443 12223 3432 3 3447999999
Q ss_pred EEEEecCCchhccCCCHHHHHHHHH
Q 047166 197 NFKVDGSRAWLLQQMDSTNQRRLYW 221 (249)
Q Consensus 197 ~~~v~~~~~~~~~~~~~~~~~~~~~ 221 (249)
.|+| |+..|+++|+++|..
T Consensus 157 ~v~i------w~~~Ls~~eI~~l~~ 175 (206)
T smart00159 157 DLNM------WDSVLSPEEIKSVYK 175 (206)
T ss_pred eeEE------ecccCCHHHHHHHHc
Confidence 9998 778899999998763
No 21
>PF06439 DUF1080: Domain of Unknown Function (DUF1080); InterPro: IPR010496 This is a family of proteins of unknown function.; PDB: 3IMM_B 3NMB_A 3S5Q_A 3OSD_A 3HBK_A 3H3L_A 3U1X_A.
Probab=91.92 E-value=1.5 Score=35.93 Aligned_cols=119 Identities=19% Similarity=0.307 Sum_probs=60.6
Q ss_pred cCCcEEEEEE--ecCCCCeEEEccceEeEEEEEEEEecCCCCCceEEEEEEeec-------CCCCCeEEEEecCCCCCCc
Q 047166 24 NNGQLLTLNL--DRYSGSGFQSKKQHLFGKIDMQLKLVPRNSAGTVTAYYLRSQ-------GPTWDEIDFEFLGNLSGHP 94 (249)
Q Consensus 24 ~~G~~l~L~l--~~~sG~~i~Sk~~~~YG~~eariKlp~g~s~G~~~AFwl~~~-------~~~~~EIDiE~lG~~~g~~ 94 (249)
+||. |. .. ....++-+.++..|.=..+++.+|+.++ | -.++.+-.. +...-|+.|.--+.....+
T Consensus 29 ~dG~-l~-~~~~~~~~~~~l~~~~~~~df~l~~d~k~~~~---~-~sGi~~r~~~~~~~~~~~~gy~~~i~~~~~~~~~~ 102 (185)
T PF06439_consen 29 KDGV-LV-SNGSSGSGGGYLYTDKKFSDFELEVDFKITPG---G-NSGIFFRAQSPGDGQDWNNGYEFQIDNSGGGTGLP 102 (185)
T ss_dssp ETTE-EE--GGGGESSS--EEESSEBSSEEEEEEEEE-TT-----EEEEEEEESSECCSSGGGTSEEEEEE-TTTCSTTT
T ss_pred eCCE-EE-ecccCCCCcceEEECCccccEEEEEEEEECCC---C-CeEEEEEeccccCCCCcceEEEEEEECCCCccCCC
Confidence 6886 33 11 2233566888877777789999998443 2 334444332 2344566653322110000
Q ss_pred eEEEeeeeeCCCCCcceEEEcCCCCCCCcEEEEEEEcCCcEEEEECCeeEEEEeec
Q 047166 95 YTVHTNVYSQGKGDREQQFHLWFDPAVNFHTYSVLWNPQRIVFSVDGIPIREFKNL 150 (249)
Q Consensus 95 ~~~~tn~~~~g~~~~~~~~~l~~d~~~dfHtY~i~Wtp~~I~fyVDG~~v~~~~~~ 150 (249)
.....++............ ...+..+||++.|.-..++|+.+|||++|.++...
T Consensus 103 -~~~G~~~~~~~~~~~~~~~-~~~~~~~W~~~~I~~~g~~i~v~vnG~~v~~~~d~ 156 (185)
T PF06439_consen 103 -NSTGSLYDEPPWQLEPSVN-VAIPPGEWNTVRIVVKGNRITVWVNGKPVADFTDP 156 (185)
T ss_dssp -TSTTSBTTTB-TCB-SSS---S--TTSEEEEEEEEETTEEEEEETTEEEEEEETT
T ss_pred -CccceEEEecccccccccc-ccCCCCceEEEEEEEECCEEEEEECCEEEEEEEcC
Confidence 0000001000000000011 11245799999999999999999999999988754
No 22
>PF10287 DUF2401: Putative TOS1-like glycosyl hydrolase (DUF2401); InterPro: IPR018805 This entry represents a family of proteins conserved primarily in fungi. One member is annotated putatively as OPEL, a house-keeping protein, but this could not be confirmed. It contains 5 highly conserved cysteines two of which form a characteristic CGC sequence motif.
Probab=89.70 E-value=1.7 Score=38.17 Aligned_cols=77 Identities=16% Similarity=0.240 Sum_probs=46.4
Q ss_pred EEEEEEEecCCC-----CCceEEEEEEeec---------------CC-CCCeEEE-EecCCCCCCceEEEeeeee-CCC-
Q 047166 51 KIDMQLKLVPRN-----SAGTVTAYYLRSQ---------------GP-TWDEIDF-EFLGNLSGHPYTVHTNVYS-QGK- 106 (249)
Q Consensus 51 ~~eariKlp~g~-----s~G~~~AFwl~~~---------------~~-~~~EIDi-E~lG~~~g~~~~~~tn~~~-~g~- 106 (249)
-|-.+++||... ...=.||+||+.. |. .++|+|| |+|... +. .+.+.+|. +|.
T Consensus 102 ~Flfef~MP~~~~~~~~~~~DmPAIWlLNA~IpRT~QY~~~~CSCW~sGCGEfDifEVl~~g--~~-k~~St~H~~qG~~ 178 (235)
T PF10287_consen 102 MFLFEFSMPHETDGGSGFNYDMPAIWLLNAQIPRTSQYGNAGCSCWKSGCGEFDIFEVLNSG--DD-KLKSTFHDYQGTD 178 (235)
T ss_pred EEEEEEECCCCcCCCCCCCCCcChhHhccccCcchhhcCCCCCCccCCCcccceeeeeccCC--Cc-eeEEEEecccCcc
Confidence 377788888731 1234799999974 53 6999995 999653 22 45555554 332
Q ss_pred -----CCcceEEEcCCCCCCCcEEEEEEEcCC
Q 047166 107 -----GDREQQFHLWFDPAVNFHTYSVLWNPQ 133 (249)
Q Consensus 107 -----~~~~~~~~l~~d~~~dfHtY~i~Wtp~ 133 (249)
++...-+. .|++..-++++.++.+
T Consensus 179 ~~~~g~G~~~yf~---RPt~~~~k~aVifd~~ 207 (235)
T PF10287_consen 179 DINGGGGSSDYFK---RPTSGTMKVAVIFDSS 207 (235)
T ss_pred ccCCCCCCCCccc---CCCCCCeEEEEEEcCC
Confidence 11111111 2556778888888643
No 23
>smart00210 TSPN Thrombospondin N-terminal -like domains. Heparin-binding and cell adhesion domain of thrombospondin
Probab=88.78 E-value=10 Score=31.63 Aligned_cols=88 Identities=16% Similarity=0.192 Sum_probs=49.5
Q ss_pred EEEEEEEecCCCCCceEEEEEEeecCCCCCeEEEEecCCCCCCceEEEeeeeeCCCCCcceEEEcC-C-CCCCCcEEEEE
Q 047166 51 KIDMQLKLVPRNSAGTVTAYYLRSQGPTWDEIDFEFLGNLSGHPYTVHTNVYSQGKGDREQQFHLW-F-DPAVNFHTYSV 128 (249)
Q Consensus 51 ~~eariKlp~g~s~G~~~AFwl~~~~~~~~EIDiE~lG~~~g~~~~~~tn~~~~g~~~~~~~~~l~-~-d~~~dfHtY~i 128 (249)
.+.+.+|..+. +.|..-++.-. ....++-++..|.. + .+. ++..+..+..+..... . -....||..++
T Consensus 55 si~~~~r~~~~-~~g~L~si~~~---~~~~~l~v~l~g~~---~-~~~--~~~~~~~g~~~~~~f~~~~l~dg~WH~lal 124 (184)
T smart00210 55 SLLTTFRQTPK-SRGVLFAIYDA---QNVRQFGLEVDGRA---N-TLL--LRYQGVDGKQHTVSFRNLPLADGQWHKLAL 124 (184)
T ss_pred EEEEEEEeCCC-CCeEEEEEEcC---CCcEEEEEEEeCCc---c-EEE--EEECCCCCcEEEEeecCCccccCCceEEEE
Confidence 46677776542 35555444331 13335555655542 1 232 2222222222222111 1 23578999999
Q ss_pred EEcCCcEEEEECCeeEEEEe
Q 047166 129 LWNPQRIVFSVDGIPIREFK 148 (249)
Q Consensus 129 ~Wtp~~I~fyVDG~~v~~~~ 148 (249)
.+..+.+++|||++++.+..
T Consensus 125 ~V~~~~v~LyvDC~~~~~~~ 144 (184)
T smart00210 125 SVSGSSATLYVDCNEIDSRP 144 (184)
T ss_pred EEeCCEEEEEECCcccccee
Confidence 99999999999999987753
No 24
>PF09264 Sial-lect-inser: Vibrio cholerae sialidase, lectin insertion; InterPro: IPR015344 This domain is predominantly found in Vibrio cholerae sialidase, and adopt a beta sandwich structure consisting of 12-14 strands arranged in two beta-sheets. It binds to lectins with high affinity helping to target the protein to sialic acid-rich environments, thereby enhancing the catalytic efficiency of the enzyme []. ; PDB: 1W0P_A 1W0O_A 1KIT_A 2W68_B.
Probab=88.71 E-value=0.88 Score=38.52 Aligned_cols=98 Identities=20% Similarity=0.349 Sum_probs=51.8
Q ss_pred CCCCeEEEccc---eEeE-EEEEEEEecCCCCCceEEEEEEeecCCCCCeEEEEecCCCCCCceEEEeeeeeCCCCCcce
Q 047166 36 YSGSGFQSKKQ---HLFG-KIDMQLKLVPRNSAGTVTAYYLRSQGPTWDEIDFEFLGNLSGHPYTVHTNVYSQGKGDREQ 111 (249)
Q Consensus 36 ~sG~~i~Sk~~---~~YG-~~eariKlp~g~s~G~~~AFwl~~~~~~~~EIDiE~lG~~~g~~~~~~tn~~~~g~~~~~~ 111 (249)
-.|+++.|+.. -.+| +....+|+..| +...-.+.-+. ..--++|-+-.+ |. +-. .-.|.+. ..
T Consensus 16 w~gse~ys~~~~~~S~~gW~ls~~~RV~~G---~~n~~yyAnG~--~r~l~~lsvn~s--G~---LvA--~L~g~ss-~~ 82 (198)
T PF09264_consen 16 WGGSELYSKQTELNSQQGWSLSWESRVVSG---GCNTNYYANGS--KRYLPILSVNES--GS---LVA--ELEGQSS-NT 82 (198)
T ss_dssp TTEEEEECCCHHHHCCC-EEEEEEEEEEEE---S-EEEEEEESS--EEEEEEEEE-TT--S----EEE--EETTS-S--E
T ss_pred cccchhhhhhhhhhhhcCcceeeeEEEecC---cceeEEEcCCc--eEEEEEEEEcCC--CC---EEE--EEecCCC-cE
Confidence 55777777543 3477 67888888766 55554444322 111222222111 10 111 1112221 12
Q ss_pred EEEcC-CCCCCCcEEEEEEEcC--CcEEEEECCeeEEEE
Q 047166 112 QFHLW-FDPAVNFHTYSVLWNP--QRIVFSVDGIPIREF 147 (249)
Q Consensus 112 ~~~l~-~d~~~dfHtY~i~Wtp--~~I~fyVDG~~v~~~ 147 (249)
.+.+. +| -.+||.|.|.-.| ..-.|||||++|.++
T Consensus 83 ~~~~~~~d-i~gyH~Y~i~~~p~~~tASfy~DG~lI~tw 120 (198)
T PF09264_consen 83 LLATTGAD-IHGYHKYEIVFSPLTNTASFYFDGTLIATW 120 (198)
T ss_dssp EEE-CHHH-HCSEEEEEEEEETTTTEEEEEETTEEEEEE
T ss_pred EEeccccc-ccceeEEEEEecCCCCceEEEECCEEEeec
Confidence 23333 22 2579999999988 889999999999985
No 25
>smart00560 LamGL LamG-like jellyroll fold domain.
Probab=83.15 E-value=20 Score=27.98 Aligned_cols=67 Identities=12% Similarity=0.203 Sum_probs=41.9
Q ss_pred CCCCcEEEEEEEcC--CcEEEEECCeeEEEEeecccCCcCCCCCCceEEEEEeeeCCCcCCCCCccccCCCCCCeEEEEe
Q 047166 119 PAVNFHTYSVLWNP--QRIVFSVDGIPIREFKNLEAIGVPFPKNQPMRIYSSLWNADDWATRGGLIKTDWSQAPFTASYR 196 (249)
Q Consensus 119 ~~~dfHtY~i~Wtp--~~I~fyVDG~~v~~~~~~~~~~~~~P~~~Pm~l~lnlw~gg~Wat~GG~~~~d~~~~P~~~~~~ 196 (249)
+...||...+-++. .+|++||||+++.+.... ..+...|+.|-..... ++ ....+|.-.++
T Consensus 59 ~~~~W~hva~v~d~~~g~~~lYvnG~~~~~~~~~-----~~~~~~~~~iG~~~~~-------~~-----~~~~~f~G~Id 121 (133)
T smart00560 59 WIGVWVHLAGVYDGGAGKLSLYVNGVEVATSETQ-----PSPSSGNLPQGGRILL-------GG-----AGGENFSGRLD 121 (133)
T ss_pred CCCCEEEEEEEEECCCCeEEEEECCEEccccccC-----CcccCCceEEeeeccC-------CC-----CCCCCceEEee
Confidence 34789999999988 789999999988654321 1222234333211111 11 12348999999
Q ss_pred EEEEec
Q 047166 197 NFKVDG 202 (249)
Q Consensus 197 ~~~v~~ 202 (249)
.|||..
T Consensus 122 evriy~ 127 (133)
T smart00560 122 EVRVYN 127 (133)
T ss_pred EEEEec
Confidence 999854
No 26
>PF00354 Pentaxin: Pentaxin family; InterPro: IPR001759 Pentaxins (or pentraxins) [, ] are a family of proteins which show, under electron microscopy, a discoid arrangement of five noncovalently bound subunits. Proteins of the pentaxin family are involved in acute immunological responses []. Three of the principal members of the pentaxin family are serum proteins: namely, C-reactive protein (CRP) [], serum amyloid P component protein (SAP) [], and female protein (FP) []. CRP is expressed during acute phase response to tissue injury or inflammation in mammals. The protein resembles antibody and performs several functions associated with host defence: it promotes agglutination, bacterial capsular swelling and phagocytosis, and activates the classical complement pathway through its calcium-dependent binding to phosphocholine. CRPs have also been sequenced in an invertebrate, Limulus polyphemus (Atlantic horseshoe crab), where they are a normal constituent of the hemolymph. SAP is a vertebrate protein that is a precursor of amyloid component P. It is found in all types of amyloid deposits, in glomerular basement menbrane and in elastic fibres in blood vessels. SAP binds to various lipoprotein ligands in a calcium-dependent manner, and it has been suggested that, in mammals, this may have important implications in atherosclerosis and amyloidosis. FP is a SAP homologue found in Mesocricetus auratus (Golden hamster). The concentration of this plasma protein is altered by sex steroids and stimuli that elicit an acute phase response. Pentaxin proteins expressed in the nervous system are neural pentaxin I (NPI) and II (NPII) []. NPI and NPII are homologous and can exist within one species. It is suggested that both proteins mediate the uptake of synaptic macromolecules and play a role in synaptic plasticity. Apexin, a sperm acrosomal protein, is a homologue of NPII found in Cavia porcellus (Guinea pig) []. PTX3 (or TSG-14) protein is a cytokine-induced protein that is homologous to CRPs and SAPs, but its function is not yet known.; PDB: 2A3W_F 3KQR_C 3D5O_D 2A3X_G 1SAC_D 2W08_B 1GYK_B 1LGN_A 2A3Y_A 1B09_D ....
Probab=76.31 E-value=37 Score=28.70 Aligned_cols=87 Identities=21% Similarity=0.314 Sum_probs=49.4
Q ss_pred CCCCcEEEEEEEcC--CcEEEEECCeeEEEEeecccCCcCCCCCCceEEEEEeeeCCCcCCCCCccccCCCCCCeEEEEe
Q 047166 119 PAVNFHTYSVLWNP--QRIVFSVDGIPIREFKNLEAIGVPFPKNQPMRIYSSLWNADDWATRGGLIKTDWSQAPFTASYR 196 (249)
Q Consensus 119 ~~~dfHtY~i~Wtp--~~I~fyVDG~~v~~~~~~~~~~~~~P~~~Pm~l~lnlw~gg~Wat~GG~~~~d~~~~P~~~~~~ 196 (249)
....||.+-+-|+. ..+.+|+||+...+-. -..+...|. --.++|..-- + .-||.. | ..-.|.-++.
T Consensus 82 ~~~~Whh~C~tW~s~~G~~~ly~dG~~~~~~~--~~~g~~i~~--gG~~vlGQeQ-d---~~gG~f--d-~~q~F~G~i~ 150 (195)
T PF00354_consen 82 RDGQWHHICVTWDSSTGRWQLYVDGVRLSSTG--LATGHSIPG--GGTLVLGQEQ-D---SYGGGF--D-ESQAFVGEIS 150 (195)
T ss_dssp -TSS-EEEEEEEETTTTEEEEEETTEEEEEEE--SSTT--B-S--SEEEEESS-B-S---BTTBTC--S-GGGB--EEEE
T ss_pred CCCCcEEEEEEEecCCcEEEEEECCEeccccc--ccCCceECC--CCEEEECccc-c---ccCCCc--C-CccEeeEEEe
Confidence 34789999999965 6789999999543321 112334443 2234444311 1 224543 3 3458999999
Q ss_pred EEEEecCCchhccCCCHHHHHHHHHH
Q 047166 197 NFKVDGSRAWLLQQMDSTNQRRLYWV 222 (249)
Q Consensus 197 ~~~v~~~~~~~~~~~~~~~~~~~~~~ 222 (249)
.|++ |+..|+++|+++|..-
T Consensus 151 ~~~i------Wd~vLs~~eI~~l~~~ 170 (195)
T PF00354_consen 151 DFNI------WDRVLSPEEIRALASC 170 (195)
T ss_dssp EEEE------ESS---HHHHHHHHHT
T ss_pred ceEE------EeeeCCHHHHHHHHhC
Confidence 9987 8889999999998753
No 27
>cd00110 LamG Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of purposes including signal transduction via cell-surface steroid receptors, adhesion, migration and differentiation through mediation of cell adhesion molecules.
Probab=73.23 E-value=40 Score=25.96 Aligned_cols=130 Identities=17% Similarity=0.104 Sum_probs=65.3
Q ss_pred EeEEEEEEEEecCCCCCceEEEEEEeecCCCCCeEEEEecCCCCCCceEEEeeeeeCCCCCcceEEEcCC-CCCCCcEEE
Q 047166 48 LFGKIDMQLKLVPRNSAGTVTAYYLRSQGPTWDEIDFEFLGNLSGHPYTVHTNVYSQGKGDREQQFHLWF-DPAVNFHTY 126 (249)
Q Consensus 48 ~YG~~eariKlp~g~s~G~~~AFwl~~~~~~~~EIDiE~lG~~~g~~~~~~tn~~~~g~~~~~~~~~l~~-d~~~dfHtY 126 (249)
....+++++|.... .|+. |++-.. .....+-+|+... .+...+.. + .....+.... -....||..
T Consensus 20 ~~~~i~~~frt~~~--~g~l--~~~~~~-~~~~~~~l~l~~g------~l~~~~~~-g--~~~~~~~~~~~v~dg~Wh~v 85 (151)
T cd00110 20 TRLSISFSFRTTSP--NGLL--LYAGSQ-NGGDFLALELEDG------RLVLRYDL-G--SGSLVLSSKTPLNDGQWHSV 85 (151)
T ss_pred ceeEEEEEEEeCCC--CeEE--EEecCC-CCCCEEEEEEECC------EEEEEEcC-C--cccEEEEccCccCCCCEEEE
Confidence 35567777777554 4654 222221 1345555666532 23322222 2 1222333221 224679999
Q ss_pred EEEEcCCcEEEEECCeeEEEEeecccCCcCCCCCCceEEEEEeeeCCCcCCCCCccccCCCCCCeEEEEeEEEE
Q 047166 127 SVLWNPQRIVFSVDGIPIREFKNLEAIGVPFPKNQPMRIYSSLWNADDWATRGGLIKTDWSQAPFTASYRNFKV 200 (249)
Q Consensus 127 ~i~Wtp~~I~fyVDG~~v~~~~~~~~~~~~~P~~~Pm~l~lnlw~gg~Wat~GG~~~~d~~~~P~~~~~~~~~v 200 (249)
.+.+....++++|||..+.+...... . ..+...-.+..||.-....+ .......+|.=-++.|++
T Consensus 86 ~i~~~~~~~~l~VD~~~~~~~~~~~~---~----~~~~~~~~~~iGg~~~~~~~--~~~~~~~~F~Gci~~v~i 150 (151)
T cd00110 86 SVERNGRSVTLSVDGERVVESGSPGG---S----ALLNLDGPLYLGGLPEDLKS--PGLPVSPGFVGCIRDLKV 150 (151)
T ss_pred EEEECCCEEEEEECCccEEeeeCCCC---c----eeecCCCCeEEcCCCCchhc--ccccccCCCceEeeEeEe
Confidence 99999999999999985444322110 0 01112222444543221111 011235678888888876
No 28
>PF02973 Sialidase: Sialidase, N-terminal domain; InterPro: IPR004124 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Sialidases (GH33 from CAZY) hydrolyse alpha-(2->3)-, alpha-(2->6)-, alpha-(2->8)-glycosidic linkages of terminal sialic residues in oligosaccharides, glycoproteins, glycolipids, colominic acid and synthetic substrates. Sialidases may act as pathogenic factors in microbial infections []. The 1.8 A structure of trans-sialidase from leech (Macrobdella decora, Q27701 from SWISSPROT) in complex with 2-deoxy-2, 3-didehydro-NeuAc was solved. The refined model comprising residues 81-769 has a catalytic beta-propeller domain, a N-terminal lectin-like domain and an irregular beta-stranded domain inserted into the catalytic domain [].; GO: 0004308 exo-alpha-sialidase activity, 0005975 carbohydrate metabolic process; PDB: 2JKB_A 2VW2_A 2VW0_A 2VW1_A 2V73_B 2V72_A 1SLI_A 1SLL_A 2SLI_A 4SLI_A ....
Probab=65.90 E-value=84 Score=26.75 Aligned_cols=144 Identities=16% Similarity=0.236 Sum_probs=73.9
Q ss_pred cceEeEEEEEEEEecCCCCCceEEEEEEeecCC----------CCCeEEEEecCCCCCCceEEEeeeeeCCCCCcceEEE
Q 047166 45 KQHLFGKIDMQLKLVPRNSAGTVTAYYLRSQGP----------TWDEIDFEFLGNLSGHPYTVHTNVYSQGKGDREQQFH 114 (249)
Q Consensus 45 ~~~~YG~~eariKlp~g~s~G~~~AFwl~~~~~----------~~~EIDiE~lG~~~g~~~~~~tn~~~~g~~~~~~~~~ 114 (249)
..+.-|.+-+|.|.... . -.-|++-.++.. ..+++=+|+.+......+...+.....+. .
T Consensus 30 k~L~~gTI~i~Fk~~~~--~-~~~sLfsiSn~~~~n~YF~lyv~~~~~G~E~R~~~~~~~y~~~~~~~v~~~-------~ 99 (190)
T PF02973_consen 30 KKLEEGTIVIRFKSDSN--S-GIQSLFSISNSTKGNEYFSLYVSNNKLGFELRDTKGNQNYNFSRPAKVRGG-------Y 99 (190)
T ss_dssp CT-SSEEEEEEEEESS---S-SEEEEEEEE-TSTTSEEEEEEEETTEEEEEEEETTTTCEEEEEESSE--SE-------E
T ss_pred hcccccEEEEEEecCCC--c-ceeEEEEecCCCCccceEEEEEECCEEEEEEecCCCCcccccccccEeccc-------c
Confidence 44557888888887443 3 345666666511 11266678876653332322222111000 0
Q ss_pred cCCCCCCCcEEEEEEEc--CCcEEEEECCeeEEEEeecccCCcCCCCCCceEEEEEeeeCCCcCCCCCccccCCCCCCeE
Q 047166 115 LWFDPAVNFHTYSVLWN--PQRIVFSVDGIPIREFKNLEAIGVPFPKNQPMRIYSSLWNADDWATRGGLIKTDWSQAPFT 192 (249)
Q Consensus 115 l~~d~~~dfHtY~i~Wt--p~~I~fyVDG~~v~~~~~~~~~~~~~P~~~Pm~l~lnlw~gg~Wat~GG~~~~d~~~~P~~ 192 (249)
+ ....||+-++.=+ ..+.++|+||+.+.++.... ..|-.+-| =+=++-.|+- .++|. ...||.
T Consensus 100 -~--~~~~~~tva~~ad~~~~~ykly~NG~~v~~~~~~~---~~Fis~i~--~~n~~~iG~t--~R~g~-----~~y~f~ 164 (190)
T PF02973_consen 100 -K--NNVTFNTVAFVADSKNKGYKLYVNGELVSTLSSKS---GNFISDIP--GLNSVQIGGT--NRAGS-----NAYPFN 164 (190)
T ss_dssp -T--TEES-EEEEEEEETTTTEEEEEETTCEEEEEEECT---SS-GGGST--T--EEEESSE--EETTE-----EES--E
T ss_pred -c--CCceEEEEEEEEecCCCeEEEEeCCeeEEEecccc---ccHhhcCc--CCceEEEcce--EeCCC-----ceeccc
Confidence 1 1346888888776 67799999998888875542 22322111 0112223331 22342 234999
Q ss_pred EEEeEEEEecCCchhccCCCHHHHHHH
Q 047166 193 ASYRNFKVDGSRAWLLQQMDSTNQRRL 219 (249)
Q Consensus 193 ~~~~~~~v~~~~~~~~~~~~~~~~~~~ 219 (249)
-.|++++|.. ..|+++++.+.
T Consensus 165 G~I~~l~iYn------~aLsdeel~~~ 185 (190)
T PF02973_consen 165 GTIDNLKIYN------RALSDEELKAR 185 (190)
T ss_dssp EEEEEEEEES------S---HHHHHHH
T ss_pred ceEEEEEEEc------CcCCHHHHHHh
Confidence 9999999965 46888887765
No 29
>PF09224 DUF1961: Domain of unknown function (DUF1961); InterPro: IPR015305 Members of this family are found in a set of hypothetical bacterial proteins. Their exact function has not, as yet, been determined. ; PDB: 1OQ1_C.
Probab=60.65 E-value=46 Score=28.92 Aligned_cols=59 Identities=27% Similarity=0.450 Sum_probs=37.0
Q ss_pred CcEEEEEEEcCCcEEEEECCeeEEEEeecccCCcCCCCCCceEEEEEeeeCCCcCCCCCccccCCCCCCeEEEEeEEEE
Q 047166 122 NFHTYSVLWNPQRIVFSVDGIPIREFKNLEAIGVPFPKNQPMRIYSSLWNADDWATRGGLIKTDWSQAPFTASYRNFKV 200 (249)
Q Consensus 122 dfHtY~i~Wtp~~I~fyVDG~~v~~~~~~~~~~~~~P~~~Pm~l~lnlw~gg~Wat~GG~~~~d~~~~P~~~~~~~~~v 200 (249)
.|+.-.+.=....|.|.|||.++..++.+.. ...|.- .+|++..- .=+|..|.|++++|
T Consensus 160 ~~Yr~~i~K~~~~v~f~In~L~vf~w~Dd~~--~~gPvl-----------------~~G~IGfR-qMapl~A~Yrnl~V 218 (218)
T PF09224_consen 160 GPYRMEIVKDGRTVRFSINGLPVFSWTDDGS--TYGPVL-----------------RGGRIGFR-QMAPLVARYRNLEV 218 (218)
T ss_dssp S-EEEEEEEETTEEEEEETTEEEEEEE--SS--SSSS--------------------SBEEEEE-EETT-EEEEEEEEE
T ss_pred CCEEEEEEEcCCEEEEEECCEEEEEEEcCCC--ccCCcc-----------------cCcEeeee-ccchhhhhhccccC
Confidence 5666677778999999999999999875432 112320 14654221 23699999999886
No 30
>KOG1834 consensus Calsyntenin [Extracellular structures]
Probab=57.34 E-value=13 Score=37.47 Aligned_cols=56 Identities=20% Similarity=0.265 Sum_probs=41.7
Q ss_pred CCCCcEEEEEEEcCCcEEEEECCeeEEEEeecccCCcCCCCCCceEEEEEeeeCCCcCCCCCc
Q 047166 119 PAVNFHTYSVLWNPQRIVFSVDGIPIREFKNLEAIGVPFPKNQPMRIYSSLWNADDWATRGGL 181 (249)
Q Consensus 119 ~~~dfHtY~i~Wtp~~I~fyVDG~~v~~~~~~~~~~~~~P~~~Pm~l~lnlw~gg~Wat~GG~ 181 (249)
...+||-|.+.-.=-.++.||||+.+.-..- -..||- .|.++-.-|-+|.=|. |+.
T Consensus 440 CD~EWH~Y~ln~efp~VtlyvDG~Sfep~~i----~ddwpl-Hpsk~~tqLvVGACW~--g~~ 495 (952)
T KOG1834|consen 440 CDNEWHHYVLNVEFPDVTLYVDGKSFEPPLI----TDDWPL-HPSKIETQLVVGACWQ--GRQ 495 (952)
T ss_pred hhhhhheeEEeecCceEEEEEcCcccCCcee----ccCCcc-CcccccceeEEeeecc--Ccc
Confidence 3588999999997555999999976532211 135887 7888888888888897 554
No 31
>smart00282 LamG Laminin G domain.
Probab=54.55 E-value=71 Score=24.35 Aligned_cols=72 Identities=21% Similarity=0.171 Sum_probs=41.0
Q ss_pred CCCcEEEEEEEcCCcEEEEECCeeEEEEeecccCCcCCCCCCceEEEEEeeeCCCcCCCCCcc-ccCCCCCCeEEEEeEE
Q 047166 120 AVNFHTYSVLWNPQRIVFSVDGIPIREFKNLEAIGVPFPKNQPMRIYSSLWNADDWATRGGLI-KTDWSQAPFTASYRNF 198 (249)
Q Consensus 120 ~~dfHtY~i~Wtp~~I~fyVDG~~v~~~~~~~~~~~~~P~~~Pm~l~lnlw~gg~Wat~GG~~-~~d~~~~P~~~~~~~~ 198 (249)
...||.-.|.-....+..+|||.......... .. ..+.+--.+.+||--. +.. ...-...+|.=-++.|
T Consensus 61 dg~WH~v~i~~~~~~~~l~VD~~~~~~~~~~~------~~-~~l~~~~~l~iGG~p~---~~~~~~~~~~~~F~GCi~~v 130 (135)
T smart00282 61 DGQWHRVAVERNGRRVTLSVDGENPVSGESPG------GL-TILNLDGPLYLGGLPE---DLKLPPLLVTPGFRGCIRNL 130 (135)
T ss_pred CCCEEEEEEEEeCCEEEEEECCCccccEECCC------Cc-eEEecCCCcEEccCCc---hhcccccccCCCCeeEeeEE
Confidence 46899999999999999999997654332211 00 1122223345555322 110 0011235677778888
Q ss_pred EEe
Q 047166 199 KVD 201 (249)
Q Consensus 199 ~v~ 201 (249)
+++
T Consensus 131 ~in 133 (135)
T smart00282 131 KVN 133 (135)
T ss_pred EEC
Confidence 775
No 32
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=53.37 E-value=34 Score=24.41 Aligned_cols=53 Identities=9% Similarity=0.026 Sum_probs=34.7
Q ss_pred ecCCCeEEecCCcEEEEEEecCCCCeEEEccceEeEEEEEEEEecCCCCCceEEEE
Q 047166 15 WGDGRGKIFNNGQLLTLNLDRYSGSGFQSKKQHLFGKIDMQLKLVPRNSAGTVTAY 70 (249)
Q Consensus 15 ~~~~nv~~~~~G~~l~L~l~~~sG~~i~Sk~~~~YG~~eariKlp~g~s~G~~~AF 70 (249)
+.++++++.-++..|.|+..+..... ...+.+|+|+=++.||..-...-+.|-
T Consensus 18 ~~~edI~v~v~~~~L~I~g~~~~~~~---~~~~~~~~f~r~~~LP~~vd~~~i~A~ 70 (83)
T cd06526 18 FKPEELKVKVSDNKLVVEGKHEERED---EHGYVSREFTRRYQLPEGVDPDSVTSS 70 (83)
T ss_pred CCHHHcEEEEECCEEEEEEEEeeecc---CCCEEEEEEEEEEECCCCCChHHeEEE
Confidence 56788777767777888876543211 345678999999999975323333443
No 33
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=51.85 E-value=25 Score=25.95 Aligned_cols=47 Identities=13% Similarity=0.130 Sum_probs=30.2
Q ss_pred ecCCCeEEecCCcEEEEEEecCCCCeEEEccceEeEEEEEEEEecCC
Q 047166 15 WGDGRGKIFNNGQLLTLNLDRYSGSGFQSKKQHLFGKIDMQLKLVPR 61 (249)
Q Consensus 15 ~~~~nv~~~~~G~~l~L~l~~~sG~~i~Sk~~~~YG~~eariKlp~g 61 (249)
+.+++|.+.-.+..|.|+..+..-..-.....+.||.|+=++.||.+
T Consensus 19 ~~kedI~V~v~~~~L~I~ger~~~~e~~~~~er~~g~F~R~f~LP~~ 65 (87)
T cd06482 19 FEPDQVKVKVKDGKVQVSAERENRYDCLGSKKYSYMNICKEFSLPPG 65 (87)
T ss_pred CCHHHeEEEEECCEEEEEEEEecccccCCccEEEEEEEEEEEECCCC
Confidence 55677777655666888875532111011235689999999999965
No 34
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6
Probab=47.56 E-value=34 Score=24.96 Aligned_cols=46 Identities=9% Similarity=0.095 Sum_probs=31.7
Q ss_pred ecCCCeEEecCCcEEEEEEecCCCC----eEEEccceEeEEEEEEEEecCC
Q 047166 15 WGDGRGKIFNNGQLLTLNLDRYSGS----GFQSKKQHLFGKIDMQLKLVPR 61 (249)
Q Consensus 15 ~~~~nv~~~~~G~~l~L~l~~~sG~----~i~Sk~~~~YG~~eariKlp~g 61 (249)
..++++.+.-+|..|.|+..+.... .+. ...+.+|.|+-++.||..
T Consensus 22 ~~kedi~v~~~~~~L~I~g~~~~~~~~~~~~~-~~e~~~g~f~R~~~LP~~ 71 (90)
T cd06470 22 FSEDDLEIEVENNQLTVTGKKADEENEEREYL-HRGIAKRAFERSFNLADH 71 (90)
T ss_pred CCHHHeEEEEECCEEEEEEEEcccccCCCcEE-EEEEeceEEEEEEECCCC
Confidence 5577888877777788887553322 121 235679999999999975
No 35
>PF02210 Laminin_G_2: Laminin G domain; InterPro: IPR012680 Laminins are large heterotrimeric glycoproteins involved in basement membrane function []. The laminin globular (G) domain can be found in one to several copies in various laminin family members, including a large number of extracellular proteins. The C terminus of the laminin alpha chain contains a tandem repeat of five laminin G domains, which are critical for heparin-binding and cell attachment activity []. Laminin alpha4 is distributed in a variety of tissues including peripheral nerves, dorsal root ganglion, skeletal muscle and capillaries; in the neuromuscular junction, it is required for synaptic specialisation []. The structure of the laminin-G domain has been predicted to resemble that of pentraxin []. Laminin G domains can vary in their function, and a variety of binding functions have been ascribed to different LamG modules. For example, the laminin alpha1 and alpha2 chains each have five C-teminal laminin G domains, where only domains LG4 and LG5 contain binding sites for heparin, sulphatides and the cell surface receptor dystroglycan []. Laminin G-containing proteins appear to have a wide variety of roles in cell adhesion, signalling, migration, assembly and differentiation. This entry represents one subtype of laminin G domains, which is sometimes found in association with thrombospondin-type laminin G domains (IPR012679 from INTERPRO).; PDB: 3POY_A 3QCW_B 3R05_B 3ASI_A 3MW4_B 3MW3_A 1QU0_D 1DYK_A 1OKQ_A 3SH4_A ....
Probab=41.71 E-value=1.4e+02 Score=21.90 Aligned_cols=74 Identities=16% Similarity=0.214 Sum_probs=47.0
Q ss_pred CCCcEEEEEEEcCCcEEEEECCeeEEEEeecccCCcCCCCCCceEEEEEeeeCCCcCCCCCccccCCC-CCCeEEEEeEE
Q 047166 120 AVNFHTYSVLWNPQRIVFSVDGIPIREFKNLEAIGVPFPKNQPMRIYSSLWNADDWATRGGLIKTDWS-QAPFTASYRNF 198 (249)
Q Consensus 120 ~~dfHtY~i~Wtp~~I~fyVDG~~v~~~~~~~~~~~~~P~~~Pm~l~lnlw~gg~Wat~GG~~~~d~~-~~P~~~~~~~~ 198 (249)
...||.-.+.-....++..||+............. .-+...-.++.||.-...... .-. ...|.--++++
T Consensus 53 dg~wh~v~i~~~~~~~~l~Vd~~~~~~~~~~~~~~------~~~~~~~~l~iGg~~~~~~~~---~~~~~~~f~Gci~~l 123 (128)
T PF02210_consen 53 DGQWHKVSISRDGNRVTLTVDGQSVSSESLPSSSS------DSLDPDGSLYIGGLPESNQPS---GSVDTPGFVGCIRDL 123 (128)
T ss_dssp SSSEEEEEEEEETTEEEEEETTSEEEEEESSSTTH------HCBESEEEEEESSTTTTCTCT---TSSTTSB-EEEEEEE
T ss_pred ccceeEEEEEEeeeeEEEEecCccceEEeccccce------ecccCCCCEEEecccCccccc---cccCCCCcEEEcCeE
Confidence 57799999999999999999999887765432100 022334446777654311111 111 55788888888
Q ss_pred EEec
Q 047166 199 KVDG 202 (249)
Q Consensus 199 ~v~~ 202 (249)
+|++
T Consensus 124 ~vng 127 (128)
T PF02210_consen 124 RVNG 127 (128)
T ss_dssp EETT
T ss_pred EECC
Confidence 8854
No 36
>PF14099 Polysacc_lyase: Polysaccharide lyase; PDB: 3ILR_A 3IKW_A 3INA_A 3IMN_A 3IN9_A 2ZZJ_A.
Probab=37.43 E-value=2.5e+02 Score=23.57 Aligned_cols=75 Identities=12% Similarity=0.298 Sum_probs=44.3
Q ss_pred EcCCCCCCCcEEEEE--EEcC---CcEEEEECCeeEEEEeecccCCcCCCCCCceEEEEEeeeCCCcCCCCCccccCCCC
Q 047166 114 HLWFDPAVNFHTYSV--LWNP---QRIVFSVDGIPIREFKNLEAIGVPFPKNQPMRIYSSLWNADDWATRGGLIKTDWSQ 188 (249)
Q Consensus 114 ~l~~d~~~dfHtY~i--~Wtp---~~I~fyVDG~~v~~~~~~~~~~~~~P~~~Pm~l~lnlw~gg~Wat~GG~~~~d~~~ 188 (249)
.+.......||.+.| .|.+ ..|..++||+++..+.... .++.....++-+.|.-.+ |.+..+.
T Consensus 145 ~~~~~~~G~W~~~~i~~~~s~~~~G~~~vw~nG~~v~~~~g~~----~~~~~~~~y~K~GiYr~~-~~~~~~~------- 212 (224)
T PF14099_consen 145 DLGPVERGKWHDFVIHVKWSPDSDGFLEVWLNGKLVVDYKGPT----GYNDDRGPYFKFGIYRSG-WKNDPNE------- 212 (224)
T ss_dssp ECCCS-TTSEEEEEEEEEE-CCCTEEEEEEECCEECCEEEEEE----CECCSSEEEEEEEEEEHC-CHHHSC--------
T ss_pred cCCCcCCCcEEEEEEEEEECCCCCEEEEEEECCEEEEEEeCCc----eeCCCCcceeEEEEECCC-CcCCCcc-------
Confidence 333334588998876 4654 5699999999998887632 233236778888887543 2211111
Q ss_pred CCeEEEEeEEEE
Q 047166 189 APFTASYRNFKV 200 (249)
Q Consensus 189 ~P~~~~~~~~~v 200 (249)
.+-..+||+|++
T Consensus 213 ~~~~vy~D~v~~ 224 (224)
T PF14099_consen 213 SDTQVYYDNVRI 224 (224)
T ss_dssp -SS-EEEEEEE-
T ss_pred cccEEEeccccC
Confidence 111289999885
No 37
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=34.57 E-value=61 Score=22.52 Aligned_cols=47 Identities=13% Similarity=0.181 Sum_probs=31.3
Q ss_pred ecCCCeEEecCCcEEEEEEecCCCCe---EEEccceEeEEEEEEEEecCC
Q 047166 15 WGDGRGKIFNNGQLLTLNLDRYSGSG---FQSKKQHLFGKIDMQLKLVPR 61 (249)
Q Consensus 15 ~~~~nv~~~~~G~~l~L~l~~~sG~~---i~Sk~~~~YG~~eariKlp~g 61 (249)
..++++.+.-.+..|.++..+..... -.......+|.|+-+++||..
T Consensus 18 ~~~~~i~V~v~~~~l~I~g~~~~~~~~~~~~~~~~~~~~~f~r~~~LP~~ 67 (88)
T cd06464 18 FKKEDIKVEVEDGVLTISGEREEEEEEEENYLRRERSYGSFSRSFRLPED 67 (88)
T ss_pred CCHHHeEEEEECCEEEEEEEEecccccCCcEEEEEEeCcEEEEEEECCCC
Confidence 45677777666666778775432211 223455678999999999976
No 38
>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=31.41 E-value=1.3e+02 Score=23.87 Aligned_cols=47 Identities=15% Similarity=0.217 Sum_probs=30.0
Q ss_pred ecCCCeEEecCCcEEEEEEecCCC----CeEEEccceEeEEEEEEEEecCC
Q 047166 15 WGDGRGKIFNNGQLLTLNLDRYSG----SGFQSKKQHLFGKIDMQLKLVPR 61 (249)
Q Consensus 15 ~~~~nv~~~~~G~~l~L~l~~~sG----~~i~Sk~~~~YG~~eariKlp~g 61 (249)
+.++++.+.-.++.|.|+.++... ..-.-.....||.|+-++.||..
T Consensus 61 ~~kedI~I~~~~~~l~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~Lp~~ 111 (146)
T COG0071 61 VDKEDIEITVEGNTLTIRGEREEEEEEEEEGYLRRERAYGEFERTFRLPEK 111 (146)
T ss_pred CChHHeEEEEECCEEEEEEEecccccccCCceEEEEEEeeeEEEEEECccc
Confidence 446666666666667777755431 11222344569999999999975
No 39
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.
Probab=29.12 E-value=96 Score=22.56 Aligned_cols=48 Identities=8% Similarity=0.015 Sum_probs=30.3
Q ss_pred eecCCCeEEecCCcEEEEEEecCCCCeEE-EccceEeEEEEEEEEecCC
Q 047166 14 TWGDGRGKIFNNGQLLTLNLDRYSGSGFQ-SKKQHLFGKIDMQLKLVPR 61 (249)
Q Consensus 14 ~~~~~nv~~~~~G~~l~L~l~~~sG~~i~-Sk~~~~YG~~eariKlp~g 61 (249)
.+.++.+.+.-.++.|.|+..+.....-. ....+.+|.|+=++.||..
T Consensus 17 G~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~~~~~~~F~R~~~LP~~ 65 (87)
T cd06481 17 GFSPEDLSVRVDGRKLVVTGKREKKNEDEKGSFSYEYQEFVREAQLPEH 65 (87)
T ss_pred CCChHHeEEEEECCEEEEEEEEeeecccCCCcEEEEeeEEEEEEECCCC
Confidence 36678888876666688887543211000 0112458999999999975
No 40
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=25.84 E-value=93 Score=22.39 Aligned_cols=35 Identities=14% Similarity=0.193 Sum_probs=21.4
Q ss_pred cEEEEECCeeEEEEeecccCCcCCCCCCceEEEEEee
Q 047166 134 RIVFSVDGIPIREFKNLEAIGVPFPKNQPMRIYSSLW 170 (249)
Q Consensus 134 ~I~fyVDG~~v~~~~~~~~~~~~~P~~~Pm~l~lnlw 170 (249)
.+.|||||+++.+..... ...|+...|..-.|.+-
T Consensus 44 ~~~W~vdg~~~g~~~~~~--~~~~~~~~~G~h~l~vv 78 (89)
T PF06832_consen 44 PVYWFVDGEPLGTTQPGH--QLFWQPDRPGEHTLTVV 78 (89)
T ss_pred cEEEEECCEEcccCCCCC--eEEeCCCCCeeEEEEEE
Confidence 899999999995543322 12343335666666663
No 41
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.
Probab=24.85 E-value=1.4e+02 Score=21.53 Aligned_cols=41 Identities=2% Similarity=0.120 Sum_probs=28.9
Q ss_pred ecCCCeEEecCCcEEEEEEecCCCCeEEEccceEeEEEEEEEEecCC
Q 047166 15 WGDGRGKIFNNGQLLTLNLDRYSGSGFQSKKQHLFGKIDMQLKLVPR 61 (249)
Q Consensus 15 ~~~~nv~~~~~G~~l~L~l~~~sG~~i~Sk~~~~YG~~eariKlp~g 61 (249)
+.|+.+.+.-+++.|.|+..+..-. ...||.|+=++.||..
T Consensus 19 ~~pedi~V~v~~~~L~I~ger~~~~------~~~~g~F~R~~~LP~~ 59 (81)
T cd06479 19 FSPEDIIVTTSNNQIEVHAEKLASD------GTVMNTFTHKCQLPED 59 (81)
T ss_pred CCHHHeEEEEECCEEEEEEEEeccC------CCEEEEEEEEEECCCC
Confidence 5678888776777788877542111 1258999999999875
No 42
>KOG4352 consensus Fas-mediated apoptosis inhibitor FAIM [Signal transduction mechanisms]
Probab=24.34 E-value=1.6e+02 Score=24.23 Aligned_cols=35 Identities=20% Similarity=0.489 Sum_probs=26.4
Q ss_pred eEEEcCCCCCCCcEEEEEEEcCCcEEEEECCeeEEE
Q 047166 111 QQFHLWFDPAVNFHTYSVLWNPQRIVFSVDGIPIRE 146 (249)
Q Consensus 111 ~~~~l~~d~~~dfHtY~i~Wtp~~I~fyVDG~~v~~ 146 (249)
.++++|.- +.+=|.|+|--..+.+..+++|..+++
T Consensus 93 k~~~~W~~-t~dg~~~RivL~kdtm~~w~NG~~l~T 127 (187)
T KOG4352|consen 93 KQYRLWLY-TDDGQEYRIVLKKDTMSLWVNGDELRT 127 (187)
T ss_pred hheeEEEE-ecCCceEEEEEeccceeeEEcCccccc
Confidence 45555542 233399999999999999999988776
No 43
>PF07691 PA14: PA14 domain; InterPro: IPR011658 The PA14 domain forms an insert in bacterial beta-glucosidases, other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins and bacterial toxins, including anthrax protective antigen (PA). The domain also occurs in a Dictyostelium pre-spore cell-inducing factor Psi and in fibrocystin, the mammalian protein whose mutation leads to polycystic kidney and hepatic disease. The crystal structure of PA shows that this domain (named PA14 after its location in the PA20 pro-peptide) has a beta-barrel structure. The PA14 domain sequence suggests a binding function, rather than a catalytic role. The PA14 domain distribution is compatible with carbohydrate binding [].; PDB: 2XVG_A 2XVK_A 2XVL_A 2XJU_A 2XJT_A 2XJQ_A 2XJS_A 2XJV_A 2XJP_A 2XJR_A ....
Probab=23.88 E-value=1.1e+02 Score=23.41 Aligned_cols=28 Identities=14% Similarity=0.110 Sum_probs=22.9
Q ss_pred CCCcEEEEEEEcCCcEEEEECCeeEEEEe
Q 047166 120 AVNFHTYSVLWNPQRIVFSVDGIPIREFK 148 (249)
Q Consensus 120 ~~dfHtY~i~Wtp~~I~fyVDG~~v~~~~ 148 (249)
.++-|++.+. ..+.++++|||+++-...
T Consensus 58 ~~G~y~f~~~-~~d~~~l~idg~~vid~~ 85 (145)
T PF07691_consen 58 ETGTYTFSLT-SDDGARLWIDGKLVIDNW 85 (145)
T ss_dssp SSEEEEEEEE-ESSEEEEEETTEEEEECS
T ss_pred cCceEEEEEE-ecccEEEEECCEEEEcCC
Confidence 5677888888 788899999999986654
No 44
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me
Probab=22.65 E-value=1.5e+02 Score=21.33 Aligned_cols=47 Identities=13% Similarity=0.245 Sum_probs=29.6
Q ss_pred ecCCCeEEecCCcEEEEEEecCCC-------CeEEEccceEeEEEEEEEEecCCC
Q 047166 15 WGDGRGKIFNNGQLLTLNLDRYSG-------SGFQSKKQHLFGKIDMQLKLVPRN 62 (249)
Q Consensus 15 ~~~~nv~~~~~G~~l~L~l~~~sG-------~~i~Sk~~~~YG~~eariKlp~g~ 62 (249)
.+++++.+.-.|..|.++..+... +.+. .....+|+|+-.+.+|.-+
T Consensus 21 v~~edi~v~~~~~~L~I~g~~~~~~~~~~~~~~~~-~~e~~~g~f~r~~~lp~v~ 74 (93)
T cd06471 21 FKKEDIKLDYKDGYLTISAKRDESKDEKDKKGNYI-RRERYYGSFSRSFYLPNVD 74 (93)
T ss_pred CCHHHeEEEEECCEEEEEEEEccccccccccCCEE-EEeeeccEEEEEEECCCCC
Confidence 456777776666668887755321 1121 1334689999999998543
No 45
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry.; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....
Probab=20.43 E-value=1.1e+02 Score=22.18 Aligned_cols=55 Identities=16% Similarity=0.269 Sum_probs=29.5
Q ss_pred ecCCCeEEecCCcEEEEEEecC----CCCeEEEccceEeEEEEEEEEecCCCCCceEEEEE
Q 047166 15 WGDGRGKIFNNGQLLTLNLDRY----SGSGFQSKKQHLFGKIDMQLKLVPRNSAGTVTAYY 71 (249)
Q Consensus 15 ~~~~nv~~~~~G~~l~L~l~~~----sG~~i~Sk~~~~YG~~eariKlp~g~s~G~~~AFw 71 (249)
+.++++++.-++..|.++..+. .+..+.+ .+.+|.|+-++.||..-...-+.|-+
T Consensus 18 ~~~edi~I~~~~~~L~I~g~~~~~~~~~~~~~~--~~~~~~f~r~~~lP~~vd~~~i~a~~ 76 (102)
T PF00011_consen 18 FDKEDIKIKVDDNKLVISGKRKEEEEDDRYYRS--ERRYGSFERSIRLPEDVDPDKIKASY 76 (102)
T ss_dssp S-GGGEEEEEETTEEEEEEEEEGEECTTCEEEE---S-SEEEEEEEE-STTB-GGG-EEEE
T ss_pred CChHHEEEEEecCccceeceeeeeeeeeeeeec--ccccceEEEEEcCCCcCCcceEEEEe
Confidence 3456666665555577777543 2233333 35689999999999752233344443
Done!