Query 047167
Match_columns 94
No_of_seqs 101 out of 603
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 14:29:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047167.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047167hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1iie_A Protein (HLA-DR antigen 41.1 5.8 0.0002 24.2 0.1 14 13-26 46-59 (75)
2 2kwt_A Protease NS2-3; NS2 dom 16.3 60 0.002 16.7 1.1 20 16-43 8-27 (33)
3 3q7a_B Farnesyltransferase bet 15.0 79 0.0027 25.4 2.1 19 12-30 84-102 (520)
4 3dss_B Geranylgeranyl transfer 13.0 1E+02 0.0036 22.7 2.2 19 12-30 42-60 (331)
5 2b3g_B Cellular tumor antigen 12.3 1E+02 0.0035 15.0 1.3 10 11-20 14-23 (28)
6 3dra_B Geranylgeranyltransfera 12.1 91 0.0031 23.9 1.6 19 12-30 27-45 (390)
7 1n4q_B Geranyltransferase type 10.2 1.5E+02 0.005 22.5 2.2 19 12-30 43-61 (377)
8 2guz_B Mitochondrial import in 9.8 1.2E+02 0.0042 17.2 1.3 20 59-78 33-52 (65)
9 3e1r_A Centrosomal protein of 8.5 1.4E+02 0.0049 17.1 1.2 7 15-21 22-28 (58)
10 1sv0_A ETS DNA-binding protein 8.4 1.9E+02 0.0064 17.3 1.8 13 11-24 14-26 (85)
No 1
>1iie_A Protein (HLA-DR antigens associated invariant chain); major histocompatibility complex, antigen processing, oligomerization, chaperonin; NMR {Homo sapiens} SCOP: a.109.1.1
Probab=41.07 E-value=5.8 Score=24.25 Aligned_cols=14 Identities=29% Similarity=1.035 Sum_probs=11.2
Q ss_pred hhhhhhHHHHHHHH
Q 047167 13 QDYRQWMTYWILLS 26 (94)
Q Consensus 13 ~~~~~WL~YWiv~~ 26 (94)
+.-..|+.+|.+|-
T Consensus 46 k~FEsWM~~WLLFe 59 (75)
T 1iie_A 46 KVFESWMHHWLLFE 59 (75)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHH
Confidence 45679999999874
No 2
>2kwt_A Protease NS2-3; NS2 domain, membrane protein, viral prote; NMR {Hepatitis c virus}
Probab=16.28 E-value=60 Score=16.70 Aligned_cols=20 Identities=30% Similarity=0.685 Sum_probs=11.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhccCC
Q 047167 16 RQWMTYWILLSLVTTFEMLCWKTLGWFP 43 (94)
Q Consensus 16 ~~WL~YWiv~~~~~~~E~~~~~~~~~iP 43 (94)
.=|++|+++ -+|.. +--|+|
T Consensus 8 lWWlqYfi~-----R~EA~---l~vWvP 27 (33)
T 2kwt_A 8 IWWLQYFIT-----RAEAH---LQVWIP 27 (33)
T ss_dssp HHHHHHHHH-----HHHHH---HTTSCC
T ss_pred HHHHHHHHH-----HHHHH---HHhhCC
Confidence 347788764 34554 346776
No 3
>3q7a_B Farnesyltransferase beta subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_B* 3q78_B* 3q79_B* 3q75_B* 3q7f_B* 3sfx_B* 3sfy_B*
Probab=15.00 E-value=79 Score=25.42 Aligned_cols=19 Identities=26% Similarity=0.725 Sum_probs=15.2
Q ss_pred hhhhhhhHHHHHHHHHHHH
Q 047167 12 VQDYRQWMTYWILLSLVTT 30 (94)
Q Consensus 12 ~~~~~~WL~YWiv~~~~~~ 30 (94)
.|..+.|+.||++-|+-.+
T Consensus 84 ~Dasr~wl~Yw~l~aL~LL 102 (520)
T 3q7a_B 84 LDASRPWLVFWTVHSLDLL 102 (520)
T ss_dssp GGGGHHHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHh
Confidence 4667899999999887554
No 4
>3dss_B Geranylgeranyl transferase type-2 subunit beta; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1ltx_B* 3c72_B* 1dce_B 3dst_B* 3dsu_B* 3dsv_B* 3dsw_B* 3dsx_B* 3hxb_B* 3hxc_B* 3hxd_B* 3hxe_B* 3hxf_B* 3pz1_B* 3pz2_B* 3pz3_B* 4ehm_B* 4gts_B* 4gtt_B* 4gtv_B*
Probab=13.01 E-value=1e+02 Score=22.68 Aligned_cols=19 Identities=21% Similarity=0.212 Sum_probs=15.1
Q ss_pred hhhhhhhHHHHHHHHHHHH
Q 047167 12 VQDYRQWMTYWILLSLVTT 30 (94)
Q Consensus 12 ~~~~~~WL~YWiv~~~~~~ 30 (94)
.+..+-|++||++-|+-.+
T Consensus 42 ~d~~r~~~~yw~l~~L~lL 60 (331)
T 3dss_B 42 SEYLRMSGVYWGLTVMDLM 60 (331)
T ss_dssp GGGGHHHHHHHHHHHHHHT
T ss_pred ccccHHHHHHHHHHHHHHh
Confidence 4568899999999887554
No 5
>2b3g_B Cellular tumor antigen P53; OB-fold, ssDNA mimicry, replication; 1.60A {Homo sapiens}
Probab=12.27 E-value=1e+02 Score=15.00 Aligned_cols=10 Identities=50% Similarity=0.890 Sum_probs=7.7
Q ss_pred ChhhhhhhHH
Q 047167 11 SVQDYRQWMT 20 (94)
Q Consensus 11 ~~~~~~~WL~ 20 (94)
+++|..||++
T Consensus 14 spddi~qw~s 23 (28)
T 2b3g_B 14 SPDDIEQWFT 23 (28)
T ss_dssp CHHHHHHHHH
T ss_pred ChHHHHHHhh
Confidence 5778889975
No 6
>3dra_B Geranylgeranyltransferase type I beta subunit; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=12.07 E-value=91 Score=23.93 Aligned_cols=19 Identities=16% Similarity=0.193 Sum_probs=14.9
Q ss_pred hhhhhhhHHHHHHHHHHHH
Q 047167 12 VQDYRQWMTYWILLSLVTT 30 (94)
Q Consensus 12 ~~~~~~WL~YWiv~~~~~~ 30 (94)
.|..+.|+.||++-|+-.+
T Consensus 27 ~D~~R~~l~Yw~l~~L~lL 45 (390)
T 3dra_B 27 EDSNKLAIIYFCLHGLQLI 45 (390)
T ss_dssp GTTCHHHHHHHHHHHHHHT
T ss_pred cchhhHHHHHHHHHHHHHh
Confidence 3567899999999886443
No 7
>1n4q_B Geranyltransferase type-I beta subunit; protein geranylgeranyltransferase type-I, ggtase; HET: MGM GER; 2.40A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1n4p_B* 1n4r_B* 1n4s_B* 1s64_B* 1tnb_B* 1tno_B* 1tnu_B* 1tny_B* 1tnz_B*
Probab=10.17 E-value=1.5e+02 Score=22.48 Aligned_cols=19 Identities=16% Similarity=0.242 Sum_probs=14.5
Q ss_pred hhhhhhhHHHHHHHHHHHH
Q 047167 12 VQDYRQWMTYWILLSLVTT 30 (94)
Q Consensus 12 ~~~~~~WL~YWiv~~~~~~ 30 (94)
.+..+.|+.||++-|+-.+
T Consensus 43 ~d~~r~~~~yw~l~~L~lL 61 (377)
T 1n4q_B 43 LETSRLTIAFFALSGLDML 61 (377)
T ss_dssp GGGGHHHHHHHHHHHHHHT
T ss_pred cccchHHHHHHHHHHHHHh
Confidence 3567899999999876544
No 8
>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=9.83 E-value=1.2e+02 Score=17.22 Aligned_cols=20 Identities=15% Similarity=0.077 Sum_probs=15.4
Q ss_pred HHhccCCCcHHHHHHHHHHH
Q 047167 59 WLALPIFNGARFFYEKFIRV 78 (94)
Q Consensus 59 wL~~P~~~GA~~iY~~~i~P 78 (94)
=.-+|.-+|+.|+-.++-+-
T Consensus 33 ~~nhPDkGGS~yl~~ki~~A 52 (65)
T 2guz_B 33 EVNDKEKGGSFYLQSKVYRA 52 (65)
T ss_dssp HHTCGGGTCCHHHHHHHHHH
T ss_pred HHhCCCCCCCHHHHHHHHHH
Confidence 35689999999998877653
No 9
>3e1r_A Centrosomal protein of 55 kDa; CEP55, ALIX, cytokinesis, ESCRT, alternative splicing, cell cycle, cell division, coiled coil, mitosis; 2.00A {Homo sapiens}
Probab=8.53 E-value=1.4e+02 Score=17.11 Aligned_cols=7 Identities=43% Similarity=1.312 Sum_probs=4.3
Q ss_pred hhhhHHH
Q 047167 15 YRQWMTY 21 (94)
Q Consensus 15 ~~~WL~Y 21 (94)
.++||.|
T Consensus 22 nqqWlvy 28 (58)
T 3e1r_A 22 NQQWLVY 28 (58)
T ss_dssp HHHHHHH
T ss_pred cchhhhh
Confidence 4566666
No 10
>1sv0_A ETS DNA-binding protein pokkuri; alpha-helix, 3(10) helix, transcription; 2.07A {Drosophila melanogaster} SCOP: a.60.1.1 PDB: 1sv4_A
Probab=8.39 E-value=1.9e+02 Score=17.34 Aligned_cols=13 Identities=15% Similarity=0.317 Sum_probs=9.5
Q ss_pred ChhhhhhhHHHHHH
Q 047167 11 SVQDYRQWMTYWIL 24 (94)
Q Consensus 11 ~~~~~~~WL~YWiv 24 (94)
++++..+||. |++
T Consensus 14 s~~~V~~WL~-W~~ 26 (85)
T 1sv0_A 14 SREDVLVFLR-FCV 26 (85)
T ss_dssp CHHHHHHHHH-HHH
T ss_pred CHHHHHHHHH-HHH
Confidence 4677888888 665
Done!