Query 047167
Match_columns 94
No_of_seqs 101 out of 603
Neff 5.9
Searched_HMMs 13730
Date Mon Mar 25 14:29:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047167.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/047167hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1iiea_ a.109.1.1 (A:) Class I 43.9 2.3 0.00017 24.6 0.1 14 13-26 46-59 (75)
2 d1tx3a1 c.52.1.19 (A:2-258) Re 13.2 55 0.004 22.1 2.4 20 73-92 227-246 (257)
3 d2h6fb1 a.102.4.3 (B:521-921) 12.8 39 0.0029 24.2 1.6 18 12-29 76-93 (401)
4 d1t33a2 a.121.1.1 (A:89-220) P 11.1 77 0.0056 18.9 2.4 40 51-93 30-69 (132)
5 d1n4qb_ a.102.4.3 (B:) Protein 10.6 65 0.0047 22.5 2.2 19 12-30 26-44 (346)
6 d1t17a_ d.129.3.6 (A:) Hypothe 10.5 97 0.007 17.6 2.7 23 70-92 117-139 (148)
7 d2jg0a1 a.102.1.9 (A:37-547) P 9.0 1.2E+02 0.0084 21.7 3.2 66 16-83 121-202 (511)
8 d1nh2b_ a.32.1.1 (B:) Large ch 6.5 1.8E+02 0.013 14.4 3.0 23 68-90 4-26 (46)
9 d1or4a_ a.1.1.2 (A:) Heme-base 6.3 1.2E+02 0.0088 18.0 1.9 18 74-91 43-60 (169)
10 d1riqa1 a.203.1.1 (A:237-457) 6.2 1.4E+02 0.01 19.2 2.3 21 61-81 48-68 (221)
No 1
>d1iiea_ a.109.1.1 (A:) Class II MHC-associated invariant chain ectoplasmic trimerization domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=43.87 E-value=2.3 Score=24.57 Aligned_cols=14 Identities=29% Similarity=1.035 Sum_probs=11.3
Q ss_pred hhhhhhHHHHHHHH
Q 047167 13 QDYRQWMTYWILLS 26 (94)
Q Consensus 13 ~~~~~WL~YWiv~~ 26 (94)
++-..|+.+|.+|-
T Consensus 46 k~FEsWM~~WLlFe 59 (75)
T d1iiea_ 46 KVFESWMHHWLLFE 59 (75)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 45679999999874
No 2
>d1tx3a1 c.52.1.19 (A:2-258) Restriction endonuclease HincII {Haemophilus influenzae [TaxId: 727]}
Probab=13.19 E-value=55 Score=22.06 Aligned_cols=20 Identities=10% Similarity=0.303 Sum_probs=16.9
Q ss_pred HHHHHHHhhhhhHHhhhhhh
Q 047167 73 EKFIRVYYNNYVRRHLNNII 92 (94)
Q Consensus 73 ~~~i~P~~~~~~~~~id~~i 92 (94)
.+.++.++.++|+|.+|.++
T Consensus 227 ~~ylkhfv~q~e~ra~~mi~ 246 (257)
T d1tx3a1 227 KSYLKHFVTQAEQRAISMID 246 (257)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 57889999999999887765
No 3
>d2h6fb1 a.102.4.3 (B:521-921) Protein farnesyltransferase, beta-subunit {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.81 E-value=39 Score=24.21 Aligned_cols=18 Identities=44% Similarity=0.973 Sum_probs=14.0
Q ss_pred hhhhhhhHHHHHHHHHHH
Q 047167 12 VQDYRQWMTYWILLSLVT 29 (94)
Q Consensus 12 ~~~~~~WL~YWiv~~~~~ 29 (94)
.|..+.||.||.+-|+-.
T Consensus 76 lD~~r~~l~yw~l~~L~L 93 (401)
T d2h6fb1 76 LDASRPWLCYWILHSLEL 93 (401)
T ss_dssp GTTCHHHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHH
Confidence 355789999999887643
No 4
>d1t33a2 a.121.1.1 (A:89-220) Putative transcriptional repressor YbiH {Salmonella typhimurium [TaxId: 90371]}
Probab=11.08 E-value=77 Score=18.89 Aligned_cols=40 Identities=15% Similarity=0.114 Sum_probs=28.8
Q ss_pred HHHHHHHHHHhccCCCcHHHHHHHHHHHHhhhhhHHhhhhhhc
Q 047167 51 YLKLLIFIWLALPIFNGARFFYEKFIRVYYNNYVRRHLNNIIG 93 (94)
Q Consensus 51 ~~K~~fl~wL~~P~~~GA~~iY~~~i~P~~~~~~~~~id~~i~ 93 (94)
..|++.= =+..| |..-+-+|++.++|..+.. .+++-++.|
T Consensus 30 ~~~l~~R-E~~~P-T~a~~~l~~~~i~P~~~~l-~~ll~~~~G 69 (132)
T d1t33a2 30 LSKFISR-EQLSP-TSAYQLVHEQVIDPLHTHL-TRLVAAYTG 69 (132)
T ss_dssp HHHHHHH-HHHSC-CHHHHHHHHHTHHHHHHHH-HHHHHHHHT
T ss_pred HHHHHHH-HccCc-hHHHHHHHHHHhhhHHHHH-HHHHHHHHC
Confidence 3444443 23455 5788999999999999888 667777776
No 5
>d1n4qb_ a.102.4.3 (B:) Protein farnesyltransferase, beta-subunit {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=10.64 E-value=65 Score=22.50 Aligned_cols=19 Identities=16% Similarity=0.242 Sum_probs=15.7
Q ss_pred hhhhhhhHHHHHHHHHHHH
Q 047167 12 VQDYRQWMTYWILLSLVTT 30 (94)
Q Consensus 12 ~~~~~~WL~YWiv~~~~~~ 30 (94)
.|..+.|+.||.+-|+-.+
T Consensus 26 ~D~~R~~~~Yw~l~sL~lL 44 (346)
T d1n4qb_ 26 LETSRLTIAFFALSGLDML 44 (346)
T ss_dssp GGGGHHHHHHHHHHHHHHT
T ss_pred HHhhhHHHHHHHHHHHHHc
Confidence 3567899999999988765
No 6
>d1t17a_ d.129.3.6 (A:) Hypothetical protein CC1736 {Caulobacter crescentus [TaxId: 155892]}
Probab=10.47 E-value=97 Score=17.65 Aligned_cols=23 Identities=0% Similarity=0.040 Sum_probs=16.3
Q ss_pred HHHHHHHHHHhhhhhHHhhhhhh
Q 047167 70 FFYEKFIRVYYNNYVRRHLNNII 92 (94)
Q Consensus 70 ~iY~~~i~P~~~~~~~~~id~~i 92 (94)
.+++.+++|.+++..++.+|++.
T Consensus 117 ~l~~~~~~~~~~~~~~~~i~aF~ 139 (148)
T d1t17a_ 117 ALLDAMLAANVDRAAGKLIACFE 139 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777888888777677766654
No 7
>d2jg0a1 a.102.1.9 (A:37-547) Periplasmic trehalase TreA {Escherichia coli [TaxId: 562]}
Probab=9.03 E-value=1.2e+02 Score=21.72 Aligned_cols=66 Identities=14% Similarity=0.252 Sum_probs=39.1
Q ss_pred hhhHHHHHHHHHHH-----HHHHHHHHHh------ccCCCchhHHHHHH-----HHHHHHHhccCCCcHHHHHHHHHHHH
Q 047167 16 RQWMTYWILLSLVT-----TFEMLCWKTL------GWFPVPNFIWAYLK-----LLIFIWLALPIFNGARFFYEKFIRVY 79 (94)
Q Consensus 16 ~~WL~YWiv~~~~~-----~~E~~~~~~~------~~iP~~~~~Y~~~K-----~~fl~wL~~P~~~GA~~iY~~~i~P~ 79 (94)
=-|=+||++.|+.. ++..+++.++ .+|||++-.|+.-+ ++.+++...-.++- .. .++.+...
T Consensus 121 yyWDSyfi~lGLl~~~~~~~a~~ml~nf~~~i~~~G~IPng~r~yy~~rSQPPlla~mv~~~~~~t~D-~~-L~~~lp~L 198 (511)
T d2jg0a1 121 YYWDSYFTMLGLAESGHWDKVADMVANFAHEIDTYGHIPNGNRSYYLSRSQPPFFALMVELLAQHEGD-AA-LKQYLPQM 198 (511)
T ss_dssp BHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSSCCSBSBGGGTTCCCSCCHHHHHHHHHHHHTH-HH-HHHHHHHH
T ss_pred cchHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHhCCcCCCCCCCCCCCCCccHHHHHHHHHHHHHhCh-HH-HHHHHHHH
Confidence 35789999999853 3333333332 89999987887643 45556666655543 33 35555444
Q ss_pred hhhh
Q 047167 80 YNNY 83 (94)
Q Consensus 80 ~~~~ 83 (94)
...|
T Consensus 199 ~~e~ 202 (511)
T d2jg0a1 199 QKEY 202 (511)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
No 8
>d1nh2b_ a.32.1.1 (B:) Large chain TOA1, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=6.47 E-value=1.8e+02 Score=14.41 Aligned_cols=23 Identities=22% Similarity=0.176 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHhhhhhHHhhhh
Q 047167 68 ARFFYEKFIRVYYNNYVRRHLNN 90 (94)
Q Consensus 68 A~~iY~~~i~P~~~~~~~~~id~ 90 (94)
++-+|+.+|.--+++-.+.-.|+
T Consensus 4 v~~vY~~VI~dVI~~vR~dF~~~ 26 (46)
T d1nh2b_ 4 ASRVYEIIVESVVNEVREDFENA 26 (46)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc
Confidence 56788888877777665554444
No 9
>d1or4a_ a.1.1.2 (A:) Heme-based aerotactic transducer HemAT, sensor domain {Bacillus subtilis [TaxId: 1423]}
Probab=6.33 E-value=1.2e+02 Score=18.02 Aligned_cols=18 Identities=0% Similarity=0.086 Sum_probs=14.5
Q ss_pred HHHHHHhhhhhHHhhhhh
Q 047167 74 KFIRVYYNNYVRRHLNNI 91 (94)
Q Consensus 74 ~~i~P~~~~~~~~~id~~ 91 (94)
+=++|.+.++.+++.|++
T Consensus 43 ~~~~p~i~~~~~~i~d~F 60 (169)
T d1or4a_ 43 EQLQPLIQENIVNIVDAF 60 (169)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 457899999988888875
No 10
>d1riqa1 a.203.1.1 (A:237-457) Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) {Aquifex aeolicus [TaxId: 63363]}
Probab=6.19 E-value=1.4e+02 Score=19.22 Aligned_cols=21 Identities=14% Similarity=0.374 Sum_probs=17.5
Q ss_pred hccCCCcHHHHHHHHHHHHhh
Q 047167 61 ALPIFNGARFFYEKFIRVYYN 81 (94)
Q Consensus 61 ~~P~~~GA~~iY~~~i~P~~~ 81 (94)
+.|.-.|.+|+=++++|--+.
T Consensus 48 v~PsN~grGYvlRriiRRa~r 68 (221)
T d1riqa1 48 VIPSNEGRGYVIRRILRRAMR 68 (221)
T ss_dssp CCCCSSHHHHHHHHHHHHHHH
T ss_pred CCCCcCCCchHHHHHHHHHHH
Confidence 568889999999999986553
Done!