Your job contains 1 sequence.
>047168
MAQLTRSTGKVTWFDGAKGYGFIRPDDGGADLFVHQKSIKSDGYRTLYENQSVEFDVQLE
ADGKYQALDVTAPGGAPVHSSKNNNTNNNSGYNNNRGGRGGGGAGFGGYWKGNNDSRRNN
GGGYGPGGVVCYNCDGVGHVARECTSNRRNSNYNNNSGGCYNCGDPEHFARDCPRQQGGS
NSYNNNSGGCFKCGGYGHLARDCITRGSGGGGGGRCYNCGKSGHLARDCGAGGAGGGGSC
FNCGKPGHFARECTKVAN
The BLAST search returned 6 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 047168
(258 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2135139 - symbol:CSDP1 "cold shock domain prot... 233 6.4e-37 2
TAIR|locus:2827810 - symbol:CSP3 "cold shock domain prote... 245 3.1e-35 2
TAIR|locus:2121219 - symbol:GRP2 "AT4G38680" species:3702... 229 1.1e-31 3
TAIR|locus:2047092 - symbol:GRP2B "glycine-rich protein 2... 229 1.3e-31 3
FB|FBgn0035626 - symbol:lin-28 "lin-28" species:7227 "Dro... 156 3.5e-15 2
ZFIN|ZDB-GENE-040426-747 - symbol:lin28a "lin-28 homolog ... 131 1.5e-14 2
UNIPROTKB|Q6ZN17 - symbol:LIN28B "Protein lin-28 homolog ... 139 1.6e-13 2
TIGR_CMR|SO_1648 - symbol:SO_1648 "cold shock domain fami... 172 4.4e-13 1
UNIPROTKB|F1P7H7 - symbol:LIN28B "Uncharacterized protein... 135 5.1e-13 2
UNIPROTKB|D4A0Q1 - symbol:Lin28b "Protein Lin28b" species... 135 5.8e-13 2
UNIPROTKB|Q8AVK2 - symbol:lin28b "Protein lin-28 homolog ... 135 6.7e-13 2
UNIPROTKB|Q9KN00 - symbol:cspA "Cold shock-like protein C... 169 9.1e-13 1
TIGR_CMR|VC_A0166 - symbol:VC_A0166 "cold shock transcrip... 169 9.1e-13 1
UNIPROTKB|F1RYQ5 - symbol:F1RYQ5 "Uncharacterized protein... 134 9.2e-13 2
MGI|MGI:3584032 - symbol:Lin28b "lin-28 homolog B (C. ele... 132 1.1e-12 2
TIGR_CMR|CHY_0157 - symbol:CHY_0157 "cold shock protein C... 168 1.2e-12 1
UNIPROTKB|Q61CX7 - symbol:lin-28 "Protein lin-28" species... 139 1.4e-12 2
UNIPROTKB|P0A968 - symbol:cspD species:83333 "Escherichia... 167 1.5e-12 1
UNIPROTKB|Q8JHC4 - symbol:lin28a "Protein lin-28 homolog ... 125 1.8e-12 2
WB|WBGene00003014 - symbol:lin-28 species:6239 "Caenorhab... 135 1.9e-12 2
UNIPROTKB|P92186 - symbol:lin-28 "Protein lin-28" species... 135 1.9e-12 2
UNIPROTKB|P0A978 - symbol:cspG species:83333 "Escherichia... 165 2.4e-12 1
TIGR_CMR|CPS_2895 - symbol:CPS_2895 "cold shock-like prot... 165 2.4e-12 1
UNIPROTKB|Q5EB47 - symbol:lin28a "Protein lin-28 homolog ... 123 2.8e-12 2
UNIPROTKB|P63848 - symbol:cspA "Probable cold shock prote... 163 3.9e-12 1
UNIPROTKB|P0A9Y6 - symbol:cspC species:83333 "Escherichia... 162 5.0e-12 1
UNIPROTKB|P0A9X9 - symbol:cspA species:83333 "Escherichia... 162 5.0e-12 1
UNIPROTKB|Q9KL16 - symbol:cspV "Cold shock protein CspV" ... 162 5.0e-12 1
TIGR_CMR|SPO_1275 - symbol:SPO_1275 "cold shock family pr... 162 5.0e-12 1
TIGR_CMR|VC_A0933 - symbol:VC_A0933 "cold shock domain fa... 162 5.0e-12 1
UNIPROTKB|Q45KJ4 - symbol:LIN28B "Protein lin-28 homolog ... 126 5.9e-12 2
UNIPROTKB|P36995 - symbol:cspB species:83333 "Escherichia... 161 6.4e-12 1
UNIPROTKB|E1BHM3 - symbol:LIN28A "Uncharacterized protein... 121 6.5e-12 2
UNIPROTKB|B1PXG0 - symbol:LIN28 "LIN28" species:9823 "Sus... 121 6.5e-12 2
UNIPROTKB|E2RD12 - symbol:LIN28A "Uncharacterized protein... 121 6.8e-12 2
UNIPROTKB|Q9H9Z2 - symbol:LIN28A "Protein lin-28 homolog ... 121 7.9e-12 2
MGI|MGI:1890546 - symbol:Lin28a "lin-28 homolog A (C. ele... 121 7.9e-12 2
RGD|1566408 - symbol:Lin28a "lin-28 homolog A (C. elegans... 121 7.9e-12 2
UNIPROTKB|Q48JS5 - symbol:capA "Cold shock protein CapA" ... 160 8.2e-12 1
UNIPROTKB|F1NKY2 - symbol:YBX1 "Nuclease-sensitive elemen... 161 9.6e-12 1
UNIPROTKB|F1NFC0 - symbol:YBX1 "Nuclease-sensitive elemen... 161 1.0e-11 1
TIGR_CMR|SO_2628 - symbol:SO_2628 "stress response protei... 159 1.0e-11 1
UNIPROTKB|F1LTA0 - symbol:F1LTA0 "Uncharacterized protein... 159 1.0e-11 1
UNIPROTKB|F1NS05 - symbol:LIN28A "Protein lin-28 homolog ... 119 1.1e-11 2
UNIPROTKB|Q45KJ5 - symbol:LIN28A "Protein lin-28 homolog ... 119 1.1e-11 2
UNIPROTKB|P91599 - symbol:lin-28 "Protein lin-28" species... 127 1.1e-11 2
UNIPROTKB|P0A972 - symbol:cspE species:83333 "Escherichia... 158 1.3e-11 1
UNIPROTKB|F1M1Q9 - symbol:F1M1Q9 "Uncharacterized protein... 159 1.9e-11 1
UNIPROTKB|Q06066 - symbol:YBX1 "Nuclease-sensitive elemen... 161 2.0e-11 1
MGI|MGI:99146 - symbol:Ybx1 "Y box protein 1" species:100... 161 2.0e-11 1
RGD|61843 - symbol:Ybx1 "Y box binding protein 1" species... 161 2.0e-11 1
RGD|6486912 - symbol:LOC100912427 "nuclease-sensitive ele... 161 2.0e-11 1
UNIPROTKB|F1MZ92 - symbol:YBX1 "Nuclease-sensitive elemen... 161 2.0e-11 1
UNIPROTKB|P67808 - symbol:YBX1 "Nuclease-sensitive elemen... 161 2.0e-11 1
UNIPROTKB|P67809 - symbol:YBX1 "Nuclease-sensitive elemen... 161 2.0e-11 1
UNIPROTKB|Q28618 - symbol:YBX1 "Nuclease-sensitive elemen... 161 2.0e-11 1
UNIPROTKB|E2R1A0 - symbol:YBX1 "Uncharacterized protein" ... 161 2.7e-11 1
TIGR_CMR|CHY_0155 - symbol:CHY_0155 "cold shock protein C... 155 2.8e-11 1
UNIPROTKB|E2RPD7 - symbol:CNBP "Uncharacterized protein" ... 131 3.1e-11 2
UNIPROTKB|F8WFK2 - symbol:Cnbp "Cellular nucleic acid-bin... 131 3.1e-11 2
UNIPROTKB|F1LY12 - symbol:F1LY12 "Uncharacterized protein... 158 3.1e-11 1
UNIPROTKB|J9NTJ7 - symbol:LOC474472 "Uncharacterized prot... 159 3.3e-11 1
UNIPROTKB|J9P9A0 - symbol:J9P9A0 "Uncharacterized protein... 155 3.8e-11 1
MGI|MGI:88431 - symbol:Cnbp "cellular nucleic acid bindin... 130 3.9e-11 2
UNIPROTKB|E9PTV8 - symbol:E9PTV8 "Uncharacterized protein... 158 4.4e-11 1
UNIPROTKB|P0A986 - symbol:cspI species:83333 "Escherichia... 153 4.5e-11 1
TIGR_CMR|BA_5115 - symbol:BA_5115 "cold shock protein Csp... 153 4.5e-11 1
TIGR_CMR|SPO_0437 - symbol:SPO_0437 "cold shock family pr... 153 4.5e-11 1
UNIPROTKB|P62633 - symbol:CNBP "Cellular nucleic acid-bin... 129 4.9e-11 2
UNIPROTKB|Q4R501 - symbol:Q4R501 "Brain cDNA, clone: QnpA... 129 4.9e-11 2
UNIPROTKB|Q5R5R5 - symbol:CNBP "Cellular nucleic acid-bin... 129 4.9e-11 2
RGD|621807 - symbol:Cnbp "CCHC-type zinc finger, nucleic ... 129 4.9e-11 2
UNIPROTKB|P62634 - symbol:Cnbp "Cellular nucleic acid-bin... 129 4.9e-11 2
UNIPROTKB|P45441 - symbol:ybx2-b "Y-box-binding protein 2... 157 5.7e-11 1
UNIPROTKB|O42395 - symbol:CNBP "Cellular nucleic acid-bin... 130 6.3e-11 2
UNIPROTKB|F1NQ33 - symbol:F1NQ33 "Uncharacterized protein... 151 7.4e-11 1
UNIPROTKB|J9NV99 - symbol:CSDA "Uncharacterized protein" ... 151 7.4e-11 1
UNIPROTKB|P21574 - symbol:ybx2-a "Y-box-binding protein 2... 155 1.0e-10 1
UNIPROTKB|G3MX85 - symbol:LOC539705 "Uncharacterized prot... 111 1.1e-10 2
TIGR_CMR|BA_5424 - symbol:BA_5424 "cold shock protein Csp... 149 1.2e-10 1
TIGR_CMR|GSU_0581 - symbol:GSU_0581 "cold-shock domain fa... 149 1.2e-10 1
UNIPROTKB|P21573 - symbol:ybx1 "Nuclease-sensitive elemen... 153 1.3e-10 1
ZFIN|ZDB-GENE-000629-3 - symbol:ybx1 "Y box binding prote... 153 1.4e-10 1
UNIPROTKB|F1LXN5 - symbol:Csda "DNA-binding protein A" sp... 151 1.5e-10 1
UNIPROTKB|D4A0L4 - symbol:Csda "DNA-binding protein A" sp... 151 2.2e-10 1
UNIPROTKB|D4AAT9 - symbol:Csda "DNA-binding protein A" sp... 151 2.3e-10 1
UNIPROTKB|F1SQ46 - symbol:CSDA "Uncharacterized protein" ... 151 2.4e-10 1
UNIPROTKB|J9NTE1 - symbol:CSDA "Uncharacterized protein" ... 151 2.4e-10 1
TIGR_CMR|CPS_0718 - symbol:CPS_0718 "cold-shock DNA-bindi... 146 2.5e-10 1
WB|WBGene00000472 - symbol:cey-1 species:6239 "Caenorhabd... 146 2.5e-10 1
UNIPROTKB|Q9KSW4 - symbol:cspD "Cold shock-like protein C... 145 3.2e-10 1
TIGR_CMR|SO_2787 - symbol:SO_2787 "cold shock domain fami... 145 3.2e-10 1
TIGR_CMR|VC_1142 - symbol:VC_1142 "cold shock-like protei... 145 3.2e-10 1
RGD|1305068 - symbol:Ybx2 "Y box binding protein 2" speci... 151 3.4e-10 1
UNIPROTKB|A5D7M4 - symbol:YBX2 "Uncharacterized protein" ... 151 3.4e-10 1
UNIPROTKB|I3LCJ2 - symbol:YBX2 "Uncharacterized protein" ... 151 3.4e-10 1
MGI|MGI:2137670 - symbol:Ybx3 "Y box protein 3" species:1... 151 3.4e-10 1
RGD|621056 - symbol:Ybx3 "Y box binding protein 3" specie... 151 3.4e-10 1
UNIPROTKB|F1MA18 - symbol:Csda "DNA-binding protein A" sp... 151 3.4e-10 1
UNIPROTKB|Q9Y2T7 - symbol:YBX2 "Y-box-binding protein 2" ... 151 3.5e-10 1
WARNING: Descriptions of 75 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2135139 [details] [associations]
symbol:CSDP1 "cold shock domain protein 1" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA;ISS] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0009409 "response
to cold" evidence=IGI;IEP] [GO:0003690 "double-stranded DNA
binding" evidence=IDA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IDA] [GO:0009414
"response to water deprivation" evidence=IEP] [GO:0009651 "response
to salt stress" evidence=IEP] [GO:0010501 "RNA secondary structure
unwinding" evidence=IDA] [GO:0032508 "DNA duplex unwinding"
evidence=IDA] [GO:0009631 "cold acclimation" evidence=IGI]
[GO:0009165 "nucleotide biosynthetic process" evidence=RCA]
InterPro:IPR001878 InterPro:IPR002059 InterPro:IPR011129
Pfam:PF00098 Pfam:PF00313 PRINTS:PR00050 PROSITE:PS50158
SMART:SM00343 SMART:SM00357 Prosite:PS00352 GO:GO:0005634
GO:GO:0005737 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0006355
GO:GO:0046872 GO:GO:0009651 GO:GO:0009414 GO:GO:0008270
GO:GO:0009631 GO:GO:0003723 EMBL:AL161588 GO:GO:0003690
GO:GO:0003697 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
Gene3D:4.10.60.10 SUPFAM:SSF57756 EMBL:AL022373
HOGENOM:HOG000186262 KO:K09250 InterPro:IPR019844 GO:GO:0010501
EMBL:AK226815 IPI:IPI00525206 PIR:T05494 RefSeq:NP_195326.1
UniGene:At.23073 HSSP:P15277 ProteinModelPortal:O65639 SMR:O65639
STRING:O65639 PaxDb:O65639 PRIDE:O65639 EnsemblPlants:AT4G36020.1
GeneID:829758 KEGG:ath:AT4G36020 TAIR:At4g36020 eggNOG:COG1278
InParanoid:O65639 OMA:GRACYNC PhylomeDB:O65639
ProtClustDB:CLSN2685328 Genevestigator:O65639 GO:GO:0032508
Uniprot:O65639
Length = 299
Score = 233 (87.1 bits), Expect = 6.4e-37, Sum P(2) = 6.4e-37
Identities = 43/70 (61%), Positives = 54/70 (77%)
Query: 6 RSTGKVTWFDGAKGYGFIRPDDGGADLFVHQKSIKSDGYRTLYENQSVEFDVQLEADGKY 65
RSTGKV WF+ +KGYGFI PDDG +LFVHQ SI S+GYR+L +VEF + +DGK
Sbjct: 10 RSTGKVNWFNASKGYGFITPDDGSVELFVHQSSIVSEGYRSLTVGDAVEFAITQGSDGKT 69
Query: 66 QALDVTAPGG 75
+A++VTAPGG
Sbjct: 70 KAVNVTAPGG 79
Score = 180 (68.4 bits), Expect = 6.4e-37, Sum P(2) = 6.4e-37
Identities = 45/131 (34%), Positives = 53/131 (40%)
Query: 137 VGHVARECTXXXXXXXXXXXXXXXXXXX-----DPEHFARDCPRQQXXXXXXXXX--XXX 189
VGHVAR+CT D HFARDC ++
Sbjct: 172 VGHVARDCTQKSVGNGDQRGAVKGGNDGCYTCGDVGHFARDCTQKVAAGNVRSGGGGSGT 231
Query: 190 CFKCGGYGHLARDCITXXXXXXXXXXXXXXXXXXHLARDCXXXXXXXXXS---CFNCGKP 246
C+ CGG GH+ARDC T HLARDC + C+ CGK
Sbjct: 232 CYSCGGVGHIARDCATKRQPSRGCYQCGGSG---HLARDCDQRGSGGGGNDNACYKCGKE 288
Query: 247 GHFARECTKVA 257
GHFAREC+ VA
Sbjct: 289 GHFARECSSVA 299
Score = 123 (48.4 bits), Expect = 6.1e-31, Sum P(2) = 6.1e-31
Identities = 34/129 (26%), Positives = 41/129 (31%)
Query: 138 GHVARECTXXXXXXXXXXXXXXXX---XXXDPEHFARDCPRQQXXXXXXXXXXXX----C 190
GH AR+CT D H ARDC ++ C
Sbjct: 141 GHFARDCTSAGNGDQRGATKGGNDGCYTCGDVGHVARDCTQKSVGNGDQRGAVKGGNDGC 200
Query: 191 FKCGGYGHLARDCITXXXXXXXXXXXXXXXX------XXHLARDCXXXXXXXXXSCFNCG 244
+ CG GH ARDC H+ARDC C+ CG
Sbjct: 201 YTCGDVGHFARDCTQKVAAGNVRSGGGGSGTCYSCGGVGHIARDCATKRQPSR-GCYQCG 259
Query: 245 KPGHFAREC 253
GH AR+C
Sbjct: 260 GSGHLARDC 268
Score = 101 (40.6 bits), Expect = 1.2e-28, Sum P(2) = 1.2e-28
Identities = 30/96 (31%), Positives = 34/96 (35%)
Query: 165 DPEHFARDCPR--QQXXXXXXXXXXXXCFKCGGYGHLARDCITXXXXXXXXXXXXXXXXX 222
D HFARDC C+ CG GH+ARDC
Sbjct: 139 DTGHFARDCTSAGNGDQRGATKGGNDGCYTCGDVGHVARDCTQKSVGNG----------- 187
Query: 223 XHLARDCXXXXXXXXXSCFNCGKPGHFARECT-KVA 257
D C+ CG GHFAR+CT KVA
Sbjct: 188 -----DQRGAVKGGNDGCYTCGDVGHFARDCTQKVA 218
Score = 86 (35.3 bits), Expect = 4.5e-27, Sum P(2) = 4.5e-27
Identities = 21/68 (30%), Positives = 27/68 (39%)
Query: 136 GVGHVARECTXXXXXXXXXXXXXXXXXXXDPEHFARDCPRQQXXXXXXXXXXXXCFKCGG 195
GVGH+AR+C H ARDC ++ C+KCG
Sbjct: 237 GVGHIARDCATKRQPSRGCYQCGGSG------HLARDCDQR---GSGGGGNDNACYKCGK 287
Query: 196 YGHLARDC 203
GH AR+C
Sbjct: 288 EGHFAREC 295
Score = 85 (35.0 bits), Expect = 5.8e-27, Sum P(2) = 5.8e-27
Identities = 21/80 (26%), Positives = 28/80 (35%)
Query: 190 CFKCGGYGHLARDCITXXXXXXXXXXXXXXXX------XXHLARDCXXX--------XXX 235
C+ CG GH+++DC H ARDC
Sbjct: 102 CYNCGELGHISKDCGIGGGGGGGERRSRGGEGCYNCGDTGHFARDCTSAGNGDQRGATKG 161
Query: 236 XXXSCFNCGKPGHFARECTK 255
C+ CG GH AR+CT+
Sbjct: 162 GNDGCYTCGDVGHVARDCTQ 181
Score = 82 (33.9 bits), Expect = 1.2e-26, Sum P(2) = 1.2e-26
Identities = 12/19 (63%), Positives = 14/19 (73%)
Query: 240 CFNCGKPGHFARECTKVAN 258
C+NCG GHFAR+CT N
Sbjct: 134 CYNCGDTGHFARDCTSAGN 152
>TAIR|locus:2827810 [details] [associations]
symbol:CSP3 "cold shock domain protein 3" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA;ISS] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0009409 "response to cold"
evidence=IEP;IMP] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0009631
"cold acclimation" evidence=IMP] [GO:0032508 "DNA duplex unwinding"
evidence=IDA] InterPro:IPR001878 InterPro:IPR002059
InterPro:IPR011129 Pfam:PF00098 Pfam:PF00313 PRINTS:PR00050
PROSITE:PS50158 SMART:SM00343 SMART:SM00357 Prosite:PS00352
GO:GO:0005634 GO:GO:0005737 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0006355 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0009631 GO:GO:0003723 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 Gene3D:4.10.60.10 SUPFAM:SSF57756
HOGENOM:HOG000186262 KO:K09250 InterPro:IPR019844 eggNOG:COG1278
ProtClustDB:CLSN2685328 GO:GO:0032508 HSSP:O54310 EMBL:AB308041
EMBL:AY035133 EMBL:AY062985 IPI:IPI00519047 PIR:T00837
RefSeq:NP_565427.1 UniGene:At.19464 ProteinModelPortal:Q94C69
SMR:Q94C69 PaxDb:Q94C69 PRIDE:Q94C69 EnsemblPlants:AT2G17870.1
GeneID:816297 KEGG:ath:AT2G17870 TAIR:At2g17870 InParanoid:Q94C69
OMA:MEDQSAA PhylomeDB:Q94C69 Genevestigator:Q94C69 Uniprot:Q94C69
Length = 301
Score = 245 (91.3 bits), Expect = 3.1e-35, Sum P(2) = 3.1e-35
Identities = 44/77 (57%), Positives = 59/77 (76%)
Query: 6 RSTGKVTWFDGAKGYGFIRPDDGGADLFVHQKSIKSDGYRTLYENQSVEFDVQLEADGKY 65
RS GKV+WF KGYGFI PDDGG +LFVHQ SI SDG+R+L +SVE+++ L +DGK
Sbjct: 10 RSIGKVSWFSDGKGYGFITPDDGGEELFVHQSSIVSDGFRSLTLGESVEYEIALGSDGKT 69
Query: 66 QALDVTAPGGAPVHSSK 82
+A++VTAPGG ++ +
Sbjct: 70 KAIEVTAPGGGSLNKKE 86
Score = 152 (58.6 bits), Expect = 3.1e-35, Sum P(2) = 3.1e-35
Identities = 36/98 (36%), Positives = 41/98 (41%)
Query: 168 HFARDCPRQQXXXXXXXXXXXXCFKCGGYGHLARDCITXXXXXXXXXXXXXXX--XXXHL 225
HFARDC +Q C+ CGG GH+A+ C + HL
Sbjct: 206 HFARDC--RQNGGGNVGGGGSTCYTCGGVGHIAKVCTSKIPSGGGGGGRACYECGGTGHL 263
Query: 226 ARDCXXXXXXXXXS------CFNCGKPGHFARECTKVA 257
ARDC CF CGK GHFARECT VA
Sbjct: 264 ARDCDRRGSGSSGGGGGSNKCFICGKEGHFARECTSVA 301
Score = 104 (41.7 bits), Expect = 3.3e-30, Sum P(2) = 3.3e-30
Identities = 32/132 (24%), Positives = 42/132 (31%)
Query: 137 VGHVARECTXXXXXXXXXXXXXXXXXXXDPE--HFARDCP-----RQQXXXXXXXXXXXX 189
VGH AR+C E H A+DC +
Sbjct: 138 VGHFARDCRQSGGGNSGGGGGGGRPCYSCGEVGHLAKDCRGGSGGNRYGGGGGRGSGGDG 197
Query: 190 CFKCGGYGHLARDCITXXXXXXXXXXXXXXX--XXXHLARDCXXXXXXXXX----SCFNC 243
C+ CGG GH ARDC H+A+ C +C+ C
Sbjct: 198 CYMCGGVGHFARDCRQNGGGNVGGGGSTCYTCGGVGHIAKVCTSKIPSGGGGGGRACYEC 257
Query: 244 GKPGHFARECTK 255
G GH AR+C +
Sbjct: 258 GGTGHLARDCDR 269
Score = 101 (40.6 bits), Expect = 6.8e-30, Sum P(2) = 6.8e-30
Identities = 31/105 (29%), Positives = 36/105 (34%)
Query: 165 DPEHFARDCPRQQXXXXXXXXXXXX--CFKCGGYGHLARDCITXXXXXXXXXXXXXXXXX 222
D HFARDC RQ C+ CG GHLA+DC
Sbjct: 137 DVGHFARDC-RQSGGGNSGGGGGGGRPCYSCGEVGHLAKDCRGGSGGNRYGGGGGRGSGG 195
Query: 223 X---------HLARDCXXXXXXXX----XSCFNCGKPGHFARECT 254
H ARDC +C+ CG GH A+ CT
Sbjct: 196 DGCYMCGGVGHFARDCRQNGGGNVGGGGSTCYTCGGVGHIAKVCT 240
Score = 98 (39.6 bits), Expect = 1.4e-29, Sum P(2) = 1.4e-29
Identities = 22/68 (32%), Positives = 26/68 (38%)
Query: 136 GVGHVARECTXXXXXXXXXXXXXXXXXXXDPEHFARDCPRQQXXXXXXXXXXXXCFKCGG 195
GVGH+A+ CT H ARDC R+ CF CG
Sbjct: 231 GVGHIAKVCTSKIPSGGGGGGRACYECGGTG-HLARDCDRRGSGSSGGGGGSNKCFICGK 289
Query: 196 YGHLARDC 203
GH AR+C
Sbjct: 290 EGHFAREC 297
Score = 83 (34.3 bits), Expect = 5.2e-28, Sum P(2) = 5.2e-28
Identities = 21/68 (30%), Positives = 26/68 (38%)
Query: 136 GVGHVARECTXXXXXXXXXXXXXXXXXXXDPEHFARDCPRQQXXXXXXXXXXXXCFKCGG 195
GVGH AR+C H A+ C + C++CGG
Sbjct: 203 GVGHFARDCRQNGGGNVGGGGSTCYTCGG-VGHIAKVCTSK--IPSGGGGGGRACYECGG 259
Query: 196 YGHLARDC 203
GHLARDC
Sbjct: 260 TGHLARDC 267
Score = 83 (34.3 bits), Expect = 5.2e-28, Sum P(2) = 5.2e-28
Identities = 23/80 (28%), Positives = 27/80 (33%)
Query: 190 CFKCGGYGHLARDCITXXXXXXXXXXXXXX-----XXXXHLARDCXXXXX---------- 234
C+ CG GH ARDC HLA+DC
Sbjct: 132 CYMCGDVGHFARDCRQSGGGNSGGGGGGGRPCYSCGEVGHLAKDCRGGSGGNRYGGGGGR 191
Query: 235 -XXXXSCFNCGKPGHFAREC 253
C+ CG GHFAR+C
Sbjct: 192 GSGGDGCYMCGGVGHFARDC 211
Score = 67 (28.6 bits), Expect = 2.5e-26, Sum P(2) = 2.5e-26
Identities = 9/15 (60%), Positives = 13/15 (86%)
Query: 239 SCFNCGKPGHFAREC 253
+CFNCG+ GH A++C
Sbjct: 95 NCFNCGEVGHMAKDC 109
Score = 64 (27.6 bits), Expect = 5.1e-26, Sum P(2) = 5.1e-26
Identities = 9/14 (64%), Positives = 11/14 (78%)
Query: 190 CFKCGGYGHLARDC 203
CF CG GH+A+DC
Sbjct: 96 CFNCGEVGHMAKDC 109
Score = 41 (19.5 bits), Expect = 1.3e-23, Sum P(2) = 1.3e-23
Identities = 7/8 (87%), Positives = 7/8 (87%)
Query: 138 GHVARECT 145
GH ARECT
Sbjct: 291 GHFARECT 298
>TAIR|locus:2121219 [details] [associations]
symbol:GRP2 "AT4G38680" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0009409 "response to cold" evidence=IEP] [GO:0003690
"double-stranded DNA binding" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0003729 "mRNA
binding" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0010228 "vegetative to
reproductive phase transition of meristem" evidence=IMP]
[GO:0048316 "seed development" evidence=IMP] [GO:0048443 "stamen
development" evidence=IMP] [GO:0009414 "response to water
deprivation" evidence=IEP] [GO:0032508 "DNA duplex unwinding"
evidence=IDA] [GO:0043457 "regulation of cellular respiration"
evidence=IMP] [GO:0005886 "plasma membrane" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0009631 "cold
acclimation" evidence=IGI] [GO:0005829 "cytosol" evidence=IDA]
[GO:0009269 "response to desiccation" evidence=IEP] [GO:0009737
"response to abscisic acid stimulus" evidence=IEP]
InterPro:IPR001878 InterPro:IPR002059 InterPro:IPR011129
Pfam:PF00098 Pfam:PF00313 PRINTS:PR00050 PROSITE:PS50158
SMART:SM00343 SMART:SM00357 Prosite:PS00352 GO:GO:0005829
GO:GO:0005886 GO:GO:0009737 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0005730 GO:GO:0006355 GO:GO:0046872 GO:GO:0008270
GO:GO:0003729 GO:GO:0009631 GO:GO:0048443 GO:GO:0048316
GO:GO:0003690 GO:GO:0003697 GO:GO:0010228 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 Gene3D:4.10.60.10 GO:GO:0009269
EMBL:AL161593 HOGENOM:HOG000186262 InterPro:IPR019844 GO:GO:0043457
eggNOG:COG1278 GO:GO:0032508 EMBL:S47408 EMBL:AL035540
EMBL:AF360202 EMBL:AF385696 EMBL:AY040049 EMBL:AY133591
EMBL:AK318762 IPI:IPI00537614 IPI:IPI00930938 PIR:JQ1061
RefSeq:NP_195580.1 UniGene:At.24348 UniGene:At.75605 HSSP:O54310
ProteinModelPortal:Q41188 SMR:Q41188 STRING:Q41188 PRIDE:Q41188
ProMEX:Q41188 EnsemblPlants:AT4G38680.1 GeneID:830024
KEGG:ath:AT4G38680 TAIR:At4g38680 InParanoid:Q41188 OMA:DCYKCGE
PhylomeDB:Q41188 ProtClustDB:CLSN2683565 Genevestigator:Q41188
Uniprot:Q41188
Length = 203
Score = 229 (85.7 bits), Expect = 1.1e-31, Sum P(3) = 1.1e-31
Identities = 40/76 (52%), Positives = 57/76 (75%)
Query: 6 RSTGKVTWFDGAKGYGFIRPDDGGADLFVHQKSIKSDGYRTLYENQSVEFDVQLEADGKY 65
R G V WFD KG+GFI PDDGG DLFVHQ SI+S+G+R+L ++VEF+V+++ + +
Sbjct: 10 RRKGSVKWFDTQKGFGFITPDDGGDDLFVHQSSIRSEGFRSLAAEEAVEFEVEIDNNNRP 69
Query: 66 QALDVTAPGGAPVHSS 81
+A+DV+ P GAPV +
Sbjct: 70 KAIDVSGPDGAPVQGN 85
Score = 77 (32.2 bits), Expect = 1.1e-31, Sum P(3) = 1.1e-31
Identities = 11/16 (68%), Positives = 15/16 (93%)
Query: 239 SCFNCGKPGHFARECT 254
SC++CG+ GHFAR+CT
Sbjct: 184 SCYSCGESGHFARDCT 199
Score = 71 (30.1 bits), Expect = 4.4e-25, Sum P(2) = 4.4e-25
Identities = 9/16 (56%), Positives = 14/16 (87%)
Query: 240 CFNCGKPGHFARECTK 255
C+ CG+PGH AR+C++
Sbjct: 131 CYKCGEPGHMARDCSE 146
Score = 67 (28.6 bits), Expect = 1.1e-31, Sum P(3) = 1.1e-31
Identities = 10/14 (71%), Positives = 12/14 (85%)
Query: 190 CFKCGGYGHLARDC 203
C+KCG GH+ARDC
Sbjct: 131 CYKCGEPGHMARDC 144
Score = 61 (26.5 bits), Expect = 3.8e-27, Sum P(3) = 3.8e-27
Identities = 9/14 (64%), Positives = 10/14 (71%)
Query: 190 CFKCGGYGHLARDC 203
C+ CG GH ARDC
Sbjct: 185 CYSCGESGHFARDC 198
Score = 39 (18.8 bits), Expect = 8.4e-29, Sum P(3) = 8.4e-29
Identities = 6/9 (66%), Positives = 7/9 (77%)
Query: 165 DPEHFARDC 173
+P H ARDC
Sbjct: 136 EPGHMARDC 144
Score = 38 (18.4 bits), Expect = 1.8e-24, Sum P(3) = 1.8e-24
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 168 HFARDC 173
HFARDC
Sbjct: 193 HFARDC 198
Score = 38 (18.4 bits), Expect = 1.2e-21, Sum P(2) = 1.2e-21
Identities = 6/8 (75%), Positives = 7/8 (87%)
Query: 138 GHVARECT 145
GH AR+CT
Sbjct: 192 GHFARDCT 199
Score = 36 (17.7 bits), Expect = 1.7e-28, Sum P(3) = 1.7e-28
Identities = 5/8 (62%), Positives = 8/8 (100%)
Query: 138 GHVARECT 145
GH+AR+C+
Sbjct: 138 GHMARDCS 145
Score = 34 (17.0 bits), Expect = 2.8e-28, Sum P(3) = 2.8e-28
Identities = 5/6 (83%), Positives = 6/6 (100%)
Query: 224 HLARDC 229
H+ARDC
Sbjct: 139 HMARDC 144
>TAIR|locus:2047092 [details] [associations]
symbol:GRP2B "glycine-rich protein 2B" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA;ISS] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0009409 "response
to cold" evidence=IEP] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005829 "cytosol" evidence=IDA] [GO:0009790 "embryo
development" evidence=IMP] [GO:0010154 "fruit development"
evidence=IMP] InterPro:IPR001878 InterPro:IPR002059
InterPro:IPR011129 Pfam:PF00098 Pfam:PF00313 PRINTS:PR00050
PROSITE:PS50158 SMART:SM00343 SMART:SM00357 Prosite:PS00352
GO:GO:0005829 GO:GO:0005634 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0005730 GO:GO:0006355 GO:GO:0046872 GO:GO:0003677
GO:GO:0009409 GO:GO:0008270 GO:GO:0003723 GO:GO:0009790
GO:GO:0010154 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
Gene3D:4.10.60.10 SUPFAM:SSF57756 HOGENOM:HOG000186262
InterPro:IPR019844 EMBL:AC006264 eggNOG:COG1278
ProtClustDB:CLSN2683565 EMBL:U39072 EMBL:AY057693 EMBL:BT021142
IPI:IPI00516457 PIR:F84596 RefSeq:NP_179702.1 UniGene:At.1680
ProteinModelPortal:Q38896 SMR:Q38896 PaxDb:Q38896 PRIDE:Q38896
EnsemblPlants:AT2G21060.1 GeneID:816641 KEGG:ath:AT2G21060
TAIR:At2g21060 InParanoid:Q38896 OMA:CFKCGEP PhylomeDB:Q38896
Genevestigator:Q38896 GermOnline:AT2G21060 Uniprot:Q38896
Length = 201
Score = 229 (85.7 bits), Expect = 1.3e-31, Sum P(3) = 1.3e-31
Identities = 41/76 (53%), Positives = 56/76 (73%)
Query: 6 RSTGKVTWFDGAKGYGFIRPDDGGADLFVHQKSIKSDGYRTLYENQSVEFDVQLEADGKY 65
R G V WFD KG+GFI P DGG DLFVHQ SI+S+G+R+L +SVEFDV+++ G+
Sbjct: 14 RRKGTVKWFDTQKGFGFITPSDGGDDLFVHQSSIRSEGFRSLAAEESVEFDVEVDNSGRP 73
Query: 66 QALDVTAPGGAPVHSS 81
+A++V+ P GAPV +
Sbjct: 74 KAIEVSGPDGAPVQGN 89
Score = 81 (33.6 bits), Expect = 4.0e-26, Sum P(2) = 4.0e-26
Identities = 12/17 (70%), Positives = 15/17 (88%)
Query: 239 SCFNCGKPGHFARECTK 255
SCF CG+PGH AREC++
Sbjct: 137 SCFKCGEPGHMARECSQ 153
Score = 77 (32.2 bits), Expect = 1.3e-31, Sum P(3) = 1.3e-31
Identities = 11/16 (68%), Positives = 15/16 (93%)
Query: 239 SCFNCGKPGHFARECT 254
SC++CG+ GHFAR+CT
Sbjct: 181 SCYSCGESGHFARDCT 196
Score = 66 (28.3 bits), Expect = 1.3e-31, Sum P(3) = 1.3e-31
Identities = 10/14 (71%), Positives = 12/14 (85%)
Query: 190 CFKCGGYGHLARDC 203
CFKCG GH+AR+C
Sbjct: 138 CFKCGEPGHMAREC 151
Score = 61 (26.5 bits), Expect = 3.8e-27, Sum P(3) = 3.8e-27
Identities = 9/14 (64%), Positives = 10/14 (71%)
Query: 190 CFKCGGYGHLARDC 203
C+ CG GH ARDC
Sbjct: 182 CYSCGESGHFARDC 195
Score = 39 (18.8 bits), Expect = 8.4e-29, Sum P(3) = 8.4e-29
Identities = 6/8 (75%), Positives = 8/8 (100%)
Query: 138 GHVARECT 145
GH+AREC+
Sbjct: 145 GHMARECS 152
Score = 38 (18.4 bits), Expect = 9.0e-25, Sum P(3) = 9.0e-25
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 168 HFARDC 173
HFARDC
Sbjct: 190 HFARDC 195
Score = 38 (18.4 bits), Expect = 1.2e-21, Sum P(2) = 1.2e-21
Identities = 6/8 (75%), Positives = 7/8 (87%)
Query: 138 GHVARECT 145
GH AR+CT
Sbjct: 189 GHFARDCT 196
>FB|FBgn0035626 [details] [associations]
symbol:lin-28 "lin-28" species:7227 "Drosophila melanogaster"
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0001708 "cell fate specification" evidence=ISS]
InterPro:IPR001878 InterPro:IPR002059 InterPro:IPR011129
Pfam:PF00313 PRINTS:PR00050 PROSITE:PS50158 SMART:SM00343
SMART:SM00357 GO:GO:0005737 EMBL:AE014296 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 Gene3D:4.10.60.10
SUPFAM:SSF57756 eggNOG:COG1278 HSSP:O54310 CTD:38639
GeneTree:ENSGT00390000001177 EMBL:AF521096 EMBL:AY118360
RefSeq:NP_647983.1 UniGene:Dm.13816 ProteinModelPortal:Q9VRN5
SMR:Q9VRN5 STRING:Q9VRN5 PaxDb:Q9VRN5 EnsemblMetazoa:FBtr0077090
GeneID:38639 KEGG:dme:Dmel_CG17334 UCSC:CG17334-RA
FlyBase:FBgn0035626 InParanoid:Q9VRN5 OMA:FANHIAS OrthoDB:EOG447D9P
PhylomeDB:Q9VRN5 GenomeRNAi:38639 NextBio:809656 Bgee:Q9VRN5
GermOnline:CG17334 Uniprot:Q9VRN5
Length = 195
Score = 156 (60.0 bits), Expect = 3.5e-15, Sum P(2) = 3.5e-15
Identities = 31/73 (42%), Positives = 46/73 (63%)
Query: 9 GKVTWFDGAKGYGFIRPDDGGADLFVHQKSIKSDGYRTLYENQSVEFDVQLEADGKYQAL 68
GK WF+ AKG+GF+ P+DGG ++FVHQ I+ G+R+L E + VEF+ Q + G +A
Sbjct: 41 GKCKWFNVAKGWGFLTPNDGGQEVFVHQSVIQMSGFRSLGEQEEVEFECQRTSRG-LEAT 99
Query: 69 DVTAPGGAPVHSS 81
V++ G S
Sbjct: 100 RVSSRHGGSCQGS 112
Score = 49 (22.3 bits), Expect = 3.5e-15, Sum P(2) = 3.5e-15
Identities = 8/15 (53%), Positives = 10/15 (66%)
Query: 240 CFNCGK-PGHFAREC 253
C+NCG+ H A EC
Sbjct: 127 CYNCGEFANHIASEC 141
Score = 44 (20.5 bits), Expect = 1.2e-14, Sum P(2) = 1.2e-14
Identities = 7/14 (50%), Positives = 8/14 (57%)
Query: 190 CFKCGGYGHLARDC 203
C +C G HL DC
Sbjct: 150 CHRCRGEDHLHADC 163
>ZFIN|ZDB-GENE-040426-747 [details] [associations]
symbol:lin28a "lin-28 homolog A (C. elegans)"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0010629
"negative regulation of gene expression" evidence=IMP] [GO:0005634
"nucleus" evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0031054 "pre-miRNA processing" evidence=ISS]
[GO:0031123 "RNA 3'-end processing" evidence=ISS] [GO:0019827 "stem
cell maintenance" evidence=ISS] [GO:0000932 "cytoplasmic mRNA
processing body" evidence=ISS] [GO:0003723 "RNA binding"
evidence=IEA;ISS] [GO:0010587 "miRNA catabolic process"
evidence=ISS] [GO:0031047 "gene silencing by RNA" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] InterPro:IPR001878 InterPro:IPR002059
InterPro:IPR011129 Pfam:PF00098 Pfam:PF00313 PRINTS:PR00050
PROSITE:PS50158 SMART:SM00343 SMART:SM00357
ZFIN:ZDB-GENE-040426-747 GO:GO:0005634 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0003723 GO:GO:0000932
GO:GO:0031054 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
HSSP:Q9H9Z2 Gene3D:4.10.60.10 SUPFAM:SSF57756 GO:GO:0019827
GO:GO:0010494 eggNOG:COG1278 GeneTree:ENSGT00390000001177 CTD:79727
HOGENOM:HOG000047091 HOVERGEN:HBG081922 OrthoDB:EOG4640D4
GO:GO:0010587 GO:GO:0031123 EMBL:BX322664 EMBL:BC044433
IPI:IPI00495578 RefSeq:NP_957385.1 UniGene:Dr.24217
ProteinModelPortal:Q803L0 SMR:Q803L0 STRING:Q803L0 PRIDE:Q803L0
Ensembl:ENSDART00000098970 Ensembl:ENSDART00000142509 GeneID:394066
KEGG:dre:394066 InParanoid:Q803L0 NextBio:20815023
ArrayExpress:Q803L0 Bgee:Q803L0 Uniprot:Q803L0
Length = 202
Score = 131 (51.2 bits), Expect = 1.5e-14, Sum P(2) = 1.5e-14
Identities = 31/83 (37%), Positives = 46/83 (55%)
Query: 8 TGKVTWFDGAKGYGFIRPD-------DGGADLFVHQKSIKSDGYRTLYENQSVEFDVQLE 60
+G WF+ G+GF+ D D+FVHQ + +G+R+L E ++VEF +
Sbjct: 35 SGVCKWFNVRMGFGFLSMTHREGICLDSPVDVFVHQSKLHMEGFRSLKEGEAVEFTFKRS 94
Query: 61 ADGKYQALDVTAPGGAP-VHSSK 82
+ G ++L VT PGGAP V S K
Sbjct: 95 SKG-LESLQVTGPGGAPCVGSEK 116
Score = 68 (29.0 bits), Expect = 1.5e-14, Sum P(2) = 1.5e-14
Identities = 10/14 (71%), Positives = 11/14 (78%)
Query: 240 CFNCGKPGHFAREC 253
CFNCG P H A+EC
Sbjct: 131 CFNCGGPNHHAKEC 144
Score = 55 (24.4 bits), Expect = 3.3e-13, Sum P(2) = 3.3e-13
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 190 CFKCGGYGHLARDC 203
CF CGG H A++C
Sbjct: 131 CFNCGGPNHHAKEC 144
>UNIPROTKB|Q6ZN17 [details] [associations]
symbol:LIN28B "Protein lin-28 homolog B" species:9606 "Homo
sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IDA] [GO:0031054 "pre-miRNA processing"
evidence=IMP] [GO:0005515 "protein binding" evidence=IPI]
[GO:0031123 "RNA 3'-end processing" evidence=IMP] [GO:0010587
"miRNA catabolic process" evidence=IMP] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0005739 "mitochondrion" evidence=IDA]
InterPro:IPR001878 InterPro:IPR002059 InterPro:IPR011129
Pfam:PF00098 Pfam:PF00313 PRINTS:PR00050 PROSITE:PS50158
SMART:SM00343 SMART:SM00357 GO:GO:0005739 GO:GO:0005634
GO:GO:0006355 GO:GO:0046872 GO:GO:0003677 EMBL:CH471051
GO:GO:0008270 GO:GO:0003723 GO:GO:0031054 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 Gene3D:4.10.60.10
SUPFAM:SSF57756 eggNOG:COG1278 HOGENOM:HOG000047091
HOVERGEN:HBG081922 OrthoDB:EOG4640D4 GO:GO:0010587 GO:GO:0031123
CTD:389421 OMA:GGHGCTS EMBL:DQ127228 EMBL:AK131411 EMBL:Z95329
EMBL:AL135911 EMBL:BC127712 EMBL:BC127713 EMBL:BC137526
EMBL:BC137527 EMBL:BC141960 IPI:IPI00398131 IPI:IPI00854717
RefSeq:NP_001004317.1 UniGene:Hs.23616 PDB:4A4I PDBsum:4A4I
ProteinModelPortal:Q6ZN17 SMR:Q6ZN17 IntAct:Q6ZN17 STRING:Q6ZN17
PhosphoSite:Q6ZN17 DMDM:74758701 PaxDb:Q6ZN17 PeptideAtlas:Q6ZN17
PRIDE:Q6ZN17 Ensembl:ENST00000345080 GeneID:389421 KEGG:hsa:389421
UCSC:uc003pqv.1 GeneCards:GC06P105404 HGNC:HGNC:32207 HPA:HPA036630
MIM:611044 neXtProt:NX_Q6ZN17 PharmGKB:PA142671543
InParanoid:Q6ZN17 PhylomeDB:Q6ZN17 GenomeRNAi:389421 NextBio:102860
ArrayExpress:Q6ZN17 Bgee:Q6ZN17 CleanEx:HS_LIN28B
Genevestigator:Q6ZN17 GermOnline:ENSG00000187772 Uniprot:Q6ZN17
Length = 250
Score = 139 (54.0 bits), Expect = 1.6e-13, Sum P(2) = 1.6e-13
Identities = 32/88 (36%), Positives = 49/88 (55%)
Query: 2 AQLTRSTGKVTWFDGAKGYGFIR-------PDDGGADLFVHQKSIKSDGYRTLYENQSVE 54
+Q+ R TG WF+ G+GFI P D D+FVHQ + +G+R+L E + VE
Sbjct: 25 SQVLRGTGHCKWFNVRMGFGFISMINREGSPLDIPVDVFVHQSKLFMEGFRSLKEGEPVE 84
Query: 55 FDVQLEADGKYQALDVTAPGGAPVHSSK 82
F + + G +++ VT PGG+P S+
Sbjct: 85 FTFKKSSKG-LESIRVTGPGGSPCLGSE 111
Score = 55 (24.4 bits), Expect = 1.6e-13, Sum P(2) = 1.6e-13
Identities = 8/15 (53%), Positives = 11/15 (73%)
Query: 240 CFNCGKPGHFARECT 254
C+NCG H A+EC+
Sbjct: 129 CYNCGGLDHHAKECS 143
Score = 53 (23.7 bits), Expect = 2.6e-13, Sum P(2) = 2.6e-13
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 190 CFKCGGYGHLARDC 203
C+ CGG H A++C
Sbjct: 129 CYNCGGLDHHAKEC 142
>TIGR_CMR|SO_1648 [details] [associations]
symbol:SO_1648 "cold shock domain family protein"
species:211586 "Shewanella oneidensis MR-1" [GO:0003677 "DNA
binding" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0009409 "response to cold"
evidence=ISS] InterPro:IPR002059 InterPro:IPR011129
InterPro:IPR012156 Pfam:PF00313 PIRSF:PIRSF002599 PRINTS:PR00050
SMART:SM00357 GO:GO:0005737 GO:GO:0006355 GO:GO:0003677
EMBL:AE014299 GenomeReviews:AE014299_GR Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 HOGENOM:HOG000070674 HSSP:P41016
RefSeq:NP_717259.2 ProteinModelPortal:Q8EGF6 GeneID:1169442
PATRIC:23522932 OMA:FEVENGQ ProtClustDB:CLSK912356 Uniprot:Q8EGF6
Length = 69
Score = 172 (65.6 bits), Expect = 4.4e-13, P = 4.4e-13
Identities = 33/67 (49%), Positives = 48/67 (71%)
Query: 4 LTRSTGKVTWFDGAKGYGFIRPDDGGADLFVHQKSIKSDGYRTLYENQSVEFDVQLEADG 63
++++TG V WF+ KG+GFI PD+GGAD FVH ++I SDG++TL E Q V ++V+ G
Sbjct: 1 MSKTTGVVKWFNEDKGFGFISPDNGGADAFVHFRAIVSDGFKTLAEGQKVSYEVEQGQKG 60
Query: 64 KYQALDV 70
QA +V
Sbjct: 61 P-QAANV 66
>UNIPROTKB|F1P7H7 [details] [associations]
symbol:LIN28B "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001878 InterPro:IPR002059 InterPro:IPR011129
Pfam:PF00098 Pfam:PF00313 PRINTS:PR00050 PROSITE:PS50158
SMART:SM00343 SMART:SM00357 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 Gene3D:4.10.60.10 SUPFAM:SSF57756
GeneTree:ENSGT00390000001177 CTD:389421 OMA:GGHGCTS
EMBL:AAEX03008576 RefSeq:XP_539064.2 ProteinModelPortal:F1P7H7
Ensembl:ENSCAFT00000005790 GeneID:481943 KEGG:cfa:481943
Uniprot:F1P7H7
Length = 251
Score = 135 (52.6 bits), Expect = 5.1e-13, Sum P(2) = 5.1e-13
Identities = 31/88 (35%), Positives = 48/88 (54%)
Query: 2 AQLTRSTGKVTWFDGAKGYGFIR-------PDDGGADLFVHQKSIKSDGYRTLYENQSVE 54
+Q+ TG WF+ G+GFI P D D+FVHQ + +G+R+L E + VE
Sbjct: 24 SQILHGTGHCKWFNVRMGFGFISMINREGSPLDIPVDVFVHQSKLFMEGFRSLKEGEPVE 83
Query: 55 FDVQLEADGKYQALDVTAPGGAPVHSSK 82
F + + G +++ VT PGG+P S+
Sbjct: 84 FTFKKSSKG-LESIRVTGPGGSPCLGSE 110
Score = 55 (24.4 bits), Expect = 5.1e-13, Sum P(2) = 5.1e-13
Identities = 8/15 (53%), Positives = 11/15 (73%)
Query: 240 CFNCGKPGHFARECT 254
C+NCG H A+EC+
Sbjct: 128 CYNCGGLDHHAKECS 142
Score = 53 (23.7 bits), Expect = 8.3e-13, Sum P(2) = 8.3e-13
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 190 CFKCGGYGHLARDC 203
C+ CGG H A++C
Sbjct: 128 CYNCGGLDHHAKEC 141
>UNIPROTKB|D4A0Q1 [details] [associations]
symbol:Lin28b "Protein Lin28b" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] InterPro:IPR001878
InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00098 Pfam:PF00313
PRINTS:PR00050 PROSITE:PS50158 SMART:SM00343 SMART:SM00357
RGD:1597432 GO:GO:0006355 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
Gene3D:4.10.60.10 SUPFAM:SSF57756 GeneTree:ENSGT00390000001177
CTD:389421 IPI:IPI00951319 RefSeq:XP_002725926.1
RefSeq:XP_002729027.1 Ensembl:ENSRNOT00000064466 GeneID:689054
KEGG:rno:689054 NextBio:737812 Uniprot:D4A0Q1
Length = 247
Score = 135 (52.6 bits), Expect = 5.8e-13, Sum P(2) = 5.8e-13
Identities = 32/88 (36%), Positives = 47/88 (53%)
Query: 2 AQLTRSTGKVTWFDGAKGYGFI-------RPDDGGADLFVHQKSIKSDGYRTLYENQSVE 54
+Q+ R TG WF+ G+GFI P D D+FVHQ + +G+R+L E + VE
Sbjct: 23 SQVLRGTGHCKWFNVRMGFGFISMISREGNPLDIPVDVFVHQSKLFMEGFRSLKEGEPVE 82
Query: 55 FDVQLEADGKYQALDVTAPGGAPVHSSK 82
F + G +++ VT PGG P S+
Sbjct: 83 FTFKKSPKG-LESIRVTGPGGNPCLGSE 109
Score = 54 (24.1 bits), Expect = 5.8e-13, Sum P(2) = 5.8e-13
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 240 CFNCGKPGHFAREC 253
C+NCG H A+EC
Sbjct: 127 CYNCGGLDHHAKEC 140
Score = 53 (23.7 bits), Expect = 7.4e-13, Sum P(2) = 7.4e-13
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 190 CFKCGGYGHLARDC 203
C+ CGG H A++C
Sbjct: 127 CYNCGGLDHHAKEC 140
>UNIPROTKB|Q8AVK2 [details] [associations]
symbol:lin28b "Protein lin-28 homolog B" species:8355
"Xenopus laevis" [GO:0003723 "RNA binding" evidence=ISS]
[GO:0010587 "miRNA catabolic process" evidence=ISS] [GO:0031054
"pre-miRNA processing" evidence=ISS] [GO:0031123 "RNA 3'-end
processing" evidence=ISS] InterPro:IPR001878 InterPro:IPR002059
InterPro:IPR011129 Pfam:PF00098 Pfam:PF00313 PRINTS:PR00050
PROSITE:PS50158 SMART:SM00343 SMART:SM00357 GO:GO:0005737
GO:GO:0006355 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0003723 GO:GO:0031054 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 HSSP:Q9H9Z2 Gene3D:4.10.60.10 SUPFAM:SSF57756
HOVERGEN:HBG081922 GO:GO:0010587 GO:GO:0031123 EMBL:BC042225
UniGene:Xl.23571 ProteinModelPortal:Q8AVK2 SMR:Q8AVK2
Xenbase:XB-GENE-1218973 Uniprot:Q8AVK2
Length = 252
Score = 135 (52.6 bits), Expect = 6.7e-13, Sum P(2) = 6.7e-13
Identities = 31/87 (35%), Positives = 47/87 (54%)
Query: 3 QLTRSTGKVTWFDGAKGYGFIR-------PDDGGADLFVHQKSIKSDGYRTLYENQSVEF 55
Q+ +G WF+ G+GFI P + D+FVHQ + DG+R+L E + VEF
Sbjct: 29 QVLLGSGHCKWFNVRMGFGFISMTSREGSPLENPVDVFVHQSKLYMDGFRSLKEGEPVEF 88
Query: 56 DVQLEADGKYQALDVTAPGGAPVHSSK 82
+ + G +++L VT PGG P S+
Sbjct: 89 TFKKSSKG-FESLRVTGPGGNPCLGSE 114
Score = 54 (24.1 bits), Expect = 6.7e-13, Sum P(2) = 6.7e-13
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 240 CFNCGKPGHFAREC 253
C+NCG H A+EC
Sbjct: 132 CYNCGGLDHHAKEC 145
Score = 53 (23.7 bits), Expect = 8.5e-13, Sum P(2) = 8.5e-13
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 190 CFKCGGYGHLARDC 203
C+ CGG H A++C
Sbjct: 132 CYNCGGLDHHAKEC 145
>UNIPROTKB|Q9KN00 [details] [associations]
symbol:cspA "Cold shock-like protein CspA" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0006355
"regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0009409 "response to cold" evidence=ISS] InterPro:IPR002059
InterPro:IPR011129 InterPro:IPR012156 Pfam:PF00313
PIRSF:PIRSF002599 PRINTS:PR00050 SMART:SM00357 Prosite:PS00352
GO:GO:0005737 GO:GO:0006355 GO:GO:0003677 GO:GO:0009409
GO:GO:0006351 EMBL:AE003853 GenomeReviews:AE003853_GR
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 eggNOG:COG1278 KO:K03704 PIR:G82492
RefSeq:NP_232566.1 ProteinModelPortal:Q9KN00 SMR:Q9KN00
PRIDE:Q9KN00 DNASU:2611900 GeneID:2611900 KEGG:vch:VCA0166
PATRIC:20084905 OMA:KMRGKVS ProtClustDB:CLSK788675 Uniprot:Q9KN00
Length = 70
Score = 169 (64.5 bits), Expect = 9.1e-13, P = 9.1e-13
Identities = 35/67 (52%), Positives = 44/67 (65%)
Query: 6 RSTGKVTWFDGAKGYGFIRPDDGGADLFVHQKSIKSDGYRTLYENQSVEFDVQLEADGKY 65
+ TG V WF+ KG+GFI D+GG D+FVH KSI S+G++TL E Q V F V+ G
Sbjct: 4 KMTGSVKWFNETKGFGFISQDNGGQDVFVHFKSIVSEGFKTLAEGQRVSFTVEQGKKGP- 62
Query: 66 QALDVTA 72
QA VTA
Sbjct: 63 QAAQVTA 69
>TIGR_CMR|VC_A0166 [details] [associations]
symbol:VC_A0166 "cold shock transcriptional regulator
CspA" species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0006355
"regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0009409 "response to cold" evidence=ISS] InterPro:IPR002059
InterPro:IPR011129 InterPro:IPR012156 Pfam:PF00313
PIRSF:PIRSF002599 PRINTS:PR00050 SMART:SM00357 Prosite:PS00352
GO:GO:0005737 GO:GO:0006355 GO:GO:0003677 GO:GO:0009409
GO:GO:0006351 EMBL:AE003853 GenomeReviews:AE003853_GR
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 eggNOG:COG1278 KO:K03704 PIR:G82492
RefSeq:NP_232566.1 ProteinModelPortal:Q9KN00 SMR:Q9KN00
PRIDE:Q9KN00 DNASU:2611900 GeneID:2611900 KEGG:vch:VCA0166
PATRIC:20084905 OMA:KMRGKVS ProtClustDB:CLSK788675 Uniprot:Q9KN00
Length = 70
Score = 169 (64.5 bits), Expect = 9.1e-13, P = 9.1e-13
Identities = 35/67 (52%), Positives = 44/67 (65%)
Query: 6 RSTGKVTWFDGAKGYGFIRPDDGGADLFVHQKSIKSDGYRTLYENQSVEFDVQLEADGKY 65
+ TG V WF+ KG+GFI D+GG D+FVH KSI S+G++TL E Q V F V+ G
Sbjct: 4 KMTGSVKWFNETKGFGFISQDNGGQDVFVHFKSIVSEGFKTLAEGQRVSFTVEQGKKGP- 62
Query: 66 QALDVTA 72
QA VTA
Sbjct: 63 QAAQVTA 69
>UNIPROTKB|F1RYQ5 [details] [associations]
symbol:F1RYQ5 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0031123 "RNA 3'-end processing" evidence=IEA]
[GO:0031054 "pre-miRNA processing" evidence=IEA] [GO:0010587 "miRNA
catabolic process" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001878 InterPro:IPR002059 InterPro:IPR011129
Pfam:PF00313 PRINTS:PR00050 PROSITE:PS50158 SMART:SM00343
SMART:SM00357 GO:GO:0005739 GO:GO:0005634 GO:GO:0006355
GO:GO:0003677 GO:GO:0008270 GO:GO:0003723 GO:GO:0031054
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
Gene3D:4.10.60.10 SUPFAM:SSF57756 GeneTree:ENSGT00390000001177
GO:GO:0010587 GO:GO:0031123 OMA:GGHGCTS EMBL:CU407220 EMBL:CU074276
EMBL:JF913470 Ensembl:ENSSSCT00000004824 Uniprot:F1RYQ5
Length = 263
Score = 134 (52.2 bits), Expect = 9.2e-13, Sum P(2) = 9.2e-13
Identities = 31/88 (35%), Positives = 48/88 (54%)
Query: 2 AQLTRSTGKVTWFDGAKGYGFIR-------PDDGGADLFVHQKSIKSDGYRTLYENQSVE 54
+Q+ TG WF+ G+GFI P D D+FVHQ + +G+R+L E + VE
Sbjct: 38 SQVLHGTGHCKWFNVRMGFGFISMISREGSPLDIPVDVFVHQSKLFMEGFRSLKEGEPVE 97
Query: 55 FDVQLEADGKYQALDVTAPGGAPVHSSK 82
F + + G +++ VT PGG+P S+
Sbjct: 98 FTFKKSSKG-LESIRVTGPGGSPCLGSE 124
Score = 55 (24.4 bits), Expect = 9.2e-13, Sum P(2) = 9.2e-13
Identities = 8/15 (53%), Positives = 11/15 (73%)
Query: 240 CFNCGKPGHFARECT 254
C+NCG H A+EC+
Sbjct: 142 CYNCGGLDHHAKECS 156
Score = 53 (23.7 bits), Expect = 1.5e-12, Sum P(2) = 1.5e-12
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 190 CFKCGGYGHLARDC 203
C+ CGG H A++C
Sbjct: 142 CYNCGGLDHHAKEC 155
>MGI|MGI:3584032 [details] [associations]
symbol:Lin28b "lin-28 homolog B (C. elegans)" species:10090
"Mus musculus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=ISO] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0010587 "miRNA catabolic process" evidence=ISO]
[GO:0031047 "gene silencing by RNA" evidence=IEA] [GO:0031054
"pre-miRNA processing" evidence=ISO] [GO:0031123 "RNA 3'-end
processing" evidence=ISO] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR001878 InterPro:IPR002059
InterPro:IPR011129 Pfam:PF00098 Pfam:PF00313 PRINTS:PR00050
PROSITE:PS50158 SMART:SM00343 SMART:SM00357 MGI:MGI:3584032
GO:GO:0005739 GO:GO:0005634 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0003723 GO:GO:0031054
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 HSSP:Q9H9Z2
Gene3D:4.10.60.10 SUPFAM:SSF57756 eggNOG:COG1278 EMBL:AC153847
GeneTree:ENSGT00390000001177 HOGENOM:HOG000047091
HOVERGEN:HBG081922 OrthoDB:EOG4640D4 GO:GO:0010587 GO:GO:0031123
CTD:389421 OMA:GGHGCTS EMBL:DQ127225 EMBL:AK133928 EMBL:AK012973
EMBL:AC155715 EMBL:BC089037 IPI:IPI00380861 IPI:IPI00652406
IPI:IPI00652717 IPI:IPI00798608 RefSeq:NP_001026942.1
UniGene:Mm.440328 ProteinModelPortal:Q45KJ6 SMR:Q45KJ6
DIP:DIP-48572N STRING:Q45KJ6 PhosphoSite:Q45KJ6 PRIDE:Q45KJ6
Ensembl:ENSMUST00000079390 GeneID:380669 KEGG:mmu:380669
UCSC:uc007faa.2 UCSC:uc007fab.1 NextBio:401084 Bgee:Q45KJ6
CleanEx:MM_LIN28B Genevestigator:Q45KJ6
GermOnline:ENSMUSG00000063804 Uniprot:Q45KJ6
Length = 247
Score = 132 (51.5 bits), Expect = 1.1e-12, Sum P(2) = 1.1e-12
Identities = 31/87 (35%), Positives = 46/87 (52%)
Query: 3 QLTRSTGKVTWFDGAKGYGFI-------RPDDGGADLFVHQKSIKSDGYRTLYENQSVEF 55
Q+ TG WF+ G+GFI P D D+FVHQ + +G+R+L E + VEF
Sbjct: 24 QVLHGTGHCKWFNVRMGFGFISMISREGNPLDIPVDVFVHQSKLFMEGFRSLKEGEPVEF 83
Query: 56 DVQLEADGKYQALDVTAPGGAPVHSSK 82
+ G +++ VT PGG+P S+
Sbjct: 84 TFKKSPKG-LESIRVTGPGGSPCLGSE 109
Score = 55 (24.4 bits), Expect = 1.1e-12, Sum P(2) = 1.1e-12
Identities = 8/15 (53%), Positives = 11/15 (73%)
Query: 240 CFNCGKPGHFARECT 254
C+NCG H A+EC+
Sbjct: 127 CYNCGGLDHHAKECS 141
Score = 53 (23.7 bits), Expect = 1.7e-12, Sum P(2) = 1.7e-12
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 190 CFKCGGYGHLARDC 203
C+ CGG H A++C
Sbjct: 127 CYNCGGLDHHAKEC 140
>TIGR_CMR|CHY_0157 [details] [associations]
symbol:CHY_0157 "cold shock protein CspC" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0003677 "DNA
binding" evidence=ISS] [GO:0009409 "response to cold" evidence=ISS]
InterPro:IPR002059 InterPro:IPR011129 InterPro:IPR012156
Pfam:PF00313 PIRSF:PIRSF002599 PRINTS:PR00050 SMART:SM00357
Prosite:PS00352 GO:GO:0005737 GO:GO:0006355 GO:GO:0003677
EMBL:CP000141 GenomeReviews:CP000141_GR Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR019844
eggNOG:COG1278 HOGENOM:HOG000070674 OMA:WTKRTTI RefSeq:YP_359029.1
ProteinModelPortal:Q3AFQ5 SMR:Q3AFQ5 STRING:Q3AFQ5 GeneID:3727298
KEGG:chy:CHY_0157 PATRIC:21273501 ProtClustDB:CLSK742705
BioCyc:CHYD246194:GJCN-157-MONOMER Uniprot:Q3AFQ5
Length = 65
Score = 168 (64.2 bits), Expect = 1.2e-12, P = 1.2e-12
Identities = 35/62 (56%), Positives = 44/62 (70%)
Query: 9 GKVTWFDGAKGYGFIRPDDGGADLFVHQKSIKSDGYRTLYENQSVEFDVQLEADGKYQAL 68
GKV WFD AKGYGFI +DGG D+FVH +IK +G++TL E Q VEF++ +E QA
Sbjct: 3 GKVKWFDPAKGYGFIEREDGG-DVFVHFSAIKGNGFKTLEEGQRVEFNI-VEGTRGPQAA 60
Query: 69 DV 70
DV
Sbjct: 61 DV 62
>UNIPROTKB|Q61CX7 [details] [associations]
symbol:lin-28 "Protein lin-28" species:6238 "Caenorhabditis
briggsae" [GO:0001708 "cell fate specification" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] InterPro:IPR001878
InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00098 Pfam:PF00313
PRINTS:PR00050 PROSITE:PS50158 SMART:SM00343 SMART:SM00357
GO:GO:0007275 GO:GO:0001708 GO:GO:0005737 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 Gene3D:4.10.60.10
SUPFAM:SSF57756 EMBL:HE600940 eggNOG:COG1278 HSSP:O54310
ProteinModelPortal:Q61CX7 STRING:Q61CX7 EnsemblMetazoa:CBG12720
WormBase:CBG12720 HOGENOM:HOG000113330 Uniprot:Q61CX7
Length = 237
Score = 139 (54.0 bits), Expect = 1.4e-12, Sum P(2) = 1.4e-12
Identities = 25/59 (42%), Positives = 38/59 (64%)
Query: 6 RSTGKVTWFDGAKGYGFIRPDDGGADLFVHQKSIKSDGYRTLYENQSVEFDVQLEADGK 64
R G WF+ +KGYGF+ D+ G DLFVHQ ++ G+R+L E + V + +Q ++GK
Sbjct: 52 RYFGSCKWFNVSKGYGFVIDDNTGEDLFVHQSNLNMQGFRSLDEGERVSYYIQERSNGK 110
Score = 44 (20.5 bits), Expect = 1.4e-12, Sum P(2) = 1.4e-12
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 190 CFKCGGYG-HLARDC 203
CF+CG + H A+ C
Sbjct: 144 CFRCGKFATHKAKGC 158
Score = 44 (20.5 bits), Expect = 1.4e-12, Sum P(2) = 1.4e-12
Identities = 9/18 (50%), Positives = 10/18 (55%)
Query: 240 CFNCGK-PGHFARECTKV 256
CF CGK H A+ C V
Sbjct: 144 CFRCGKFATHKAKGCPNV 161
Score = 41 (19.5 bits), Expect = 2.8e-12, Sum P(2) = 2.8e-12
Identities = 8/30 (26%), Positives = 11/30 (36%)
Query: 224 HLARDCXXXXXXXXXSCFNCGKPGHFAREC 253
H A+ C C+ CG H + C
Sbjct: 153 HKAKGCPNVKTDAKV-CYTCGSEEHVSSVC 181
Score = 38 (18.4 bits), Expect = 5.8e-12, Sum P(2) = 5.8e-12
Identities = 9/36 (25%), Positives = 14/36 (38%)
Query: 168 HFARDCPRQQXXXXXXXXXXXXCFKCGGYGHLARDC 203
H A+ CP + C+ CG H++ C
Sbjct: 153 HKAKGCPNVKTDAKV-------CYTCGSEEHVSSVC 181
>UNIPROTKB|P0A968 [details] [associations]
symbol:cspD species:83333 "Escherichia coli K-12"
[GO:0003697 "single-stranded DNA binding" evidence=IDA] [GO:0042594
"response to starvation" evidence=IDA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008156 "negative
regulation of DNA replication" evidence=IEA;IDA] [GO:0003723 "RNA
binding" evidence=IEA;IDA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR002059 InterPro:IPR011129 InterPro:IPR012156
InterPro:IPR012751 Pfam:PF00313 PIRSF:PIRSF002599 PRINTS:PR00050
SMART:SM00357 Prosite:PS00352 GO:GO:0005737 GO:GO:0006355
EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0042594 GO:GO:0003723 GO:GO:0003697
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0008156
InterPro:IPR019844 EMBL:M31045 eggNOG:COG1278 HOGENOM:HOG000070674
KO:K03704 PIR:H64826 RefSeq:NP_415401.1 RefSeq:YP_489153.1
ProteinModelPortal:P0A968 SMR:P0A968 DIP:DIP-47833N IntAct:P0A968
MINT:MINT-1219798 PaxDb:P0A968 PRIDE:P0A968
EnsemblBacteria:EBESCT00000001356 EnsemblBacteria:EBESCT00000017372
GeneID:12934143 GeneID:945669 KEGG:ecj:Y75_p0853 KEGG:eco:b0880
PATRIC:32116969 EchoBASE:EB1102 EcoGene:EG11111 OMA:QVVRFDV
ProtClustDB:PRK09937 BioCyc:EcoCyc:EG11111-MONOMER
BioCyc:ECOL316407:JW0864-MONOMER Genevestigator:P0A968
TIGRFAMs:TIGR02381 Uniprot:P0A968
Length = 74
Score = 167 (63.8 bits), Expect = 1.5e-12, P = 1.5e-12
Identities = 31/62 (50%), Positives = 41/62 (66%)
Query: 9 GKVTWFDGAKGYGFIRPDDGGADLFVHQKSIKSDGYRTLYENQSVEFDVQLEADGKYQAL 68
G V WF+ AKG+GFI P+ GG D+F H +I+ DGYRTL QSV+FDV G + ++
Sbjct: 4 GTVKWFNNAKGFGFICPEGGGEDIFAHYSTIQMDGYRTLKAGQSVQFDVHQGPKGNHASV 63
Query: 69 DV 70
V
Sbjct: 64 IV 65
>UNIPROTKB|Q8JHC4 [details] [associations]
symbol:lin28a "Protein lin-28 homolog A" species:8355
"Xenopus laevis" [GO:0000932 "cytoplasmic mRNA processing body"
evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0010587 "miRNA catabolic process" evidence=ISS]
[GO:0019827 "stem cell maintenance" evidence=ISS] [GO:0031054
"pre-miRNA processing" evidence=ISS] [GO:0031123 "RNA 3'-end
processing" evidence=ISS] InterPro:IPR001878 InterPro:IPR002059
InterPro:IPR011129 Pfam:PF00098 Pfam:PF00313 PRINTS:PR00050
PROSITE:PS50158 SMART:SM00343 SMART:SM00357 GO:GO:0005634
GO:GO:0006355 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0003723 GO:GO:0000932 GO:GO:0031054 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 HSSP:Q9H9Z2 Gene3D:4.10.60.10
SUPFAM:SSF57756 GO:GO:0019827 GO:GO:0010494 CTD:79727
HOVERGEN:HBG081922 GO:GO:0010587 GO:GO:0031123 EMBL:AF521098
RefSeq:NP_001080918.1 UniGene:Xl.76870 ProteinModelPortal:Q8JHC4
SMR:Q8JHC4 GeneID:387262 KEGG:xla:387262 Xenbase:XB-GENE-866059
Uniprot:Q8JHC4
Length = 195
Score = 125 (49.1 bits), Expect = 1.8e-12, Sum P(2) = 1.8e-12
Identities = 30/84 (35%), Positives = 45/84 (53%)
Query: 6 RSTGKVTWFDGAKGYGFIR-PDDGGADL------FVHQKSIKSDGYRTLYENQSVEFDVQ 58
+ +G WF+ G+GF+ G DL FVHQ + +G+R+L E +SVEF +
Sbjct: 33 QGSGVCKWFNVRMGFGFLTMTKKEGTDLETPLDVFVHQSKLHMEGFRSLKEGESVEFTFK 92
Query: 59 LEADGKYQALDVTAPGGAPVHSSK 82
+ G ++ VT PGGAP S+
Sbjct: 93 KSSKG-LESTQVTGPGGAPCIGSE 115
Score = 54 (24.1 bits), Expect = 1.8e-12, Sum P(2) = 1.8e-12
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 240 CFNCGKPGHFAREC 253
C+NCG H A+EC
Sbjct: 133 CYNCGGLDHHAKEC 146
Score = 53 (23.7 bits), Expect = 2.2e-12, Sum P(2) = 2.2e-12
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 190 CFKCGGYGHLARDC 203
C+ CGG H A++C
Sbjct: 133 CYNCGGLDHHAKEC 146
Score = 40 (19.1 bits), Expect = 4.9e-11, Sum P(2) = 4.9e-11
Identities = 9/34 (26%), Positives = 13/34 (38%)
Query: 224 HLARDCXXXXXXXXXSCFNCGKPGHFARECTKVA 257
H A++C C C P H +C + A
Sbjct: 141 HHAKECKLPPQPK--KCHFCQNPNHMVAQCPEKA 172
>WB|WBGene00003014 [details] [associations]
symbol:lin-28 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0018991 "oviposition" evidence=IMP] [GO:0002009
"morphogenesis of an epithelium" evidence=IMP] [GO:0040034
"regulation of development, heterochronic" evidence=IGI;IMP]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0070883 "pre-miRNA
binding" evidence=IPI] [GO:0007549 "dosage compensation"
evidence=IGI] InterPro:IPR001878 InterPro:IPR002059
InterPro:IPR011129 Pfam:PF00098 Pfam:PF00313 PRINTS:PR00050
PROSITE:PS50158 SMART:SM00343 SMART:SM00357 GO:GO:0007275
GO:GO:0001708 GO:GO:0002009 GO:GO:0005737 GO:GO:0018991
GO:GO:0006355 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0040034 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
Gene3D:4.10.60.10 SUPFAM:SSF57756 eggNOG:COG1278 HSSP:O54310
GO:GO:0070883 GO:GO:0007549 HOGENOM:HOG000113330 EMBL:U75912
EMBL:U75915 EMBL:Z81494 RefSeq:NP_001021085.1 RefSeq:NP_492281.2
UniGene:Cel.22515 ProteinModelPortal:P92186 SMR:P92186
DIP:DIP-40151N IntAct:P92186 STRING:P92186 PaxDb:P92186
PRIDE:P92186 EnsemblMetazoa:F02E9.2a GeneID:172626
KEGG:cel:CELE_F02E9.2 UCSC:F02E9.2a CTD:38639 WormBase:F02E9.2a
WormBase:F02E9.2b GeneTree:ENSGT00390000001177 InParanoid:P92186
OMA:FATHKAK NextBio:876317 Uniprot:P92186
Length = 227
Score = 135 (52.6 bits), Expect = 1.9e-12, Sum P(2) = 1.9e-12
Identities = 25/59 (42%), Positives = 37/59 (62%)
Query: 6 RSTGKVTWFDGAKGYGFIRPDDGGADLFVHQKSIKSDGYRTLYENQSVEFDVQLEADGK 64
R G WF+ +KGYGF+ D G DLFVHQ ++ G+R+L E + V + +Q ++GK
Sbjct: 52 RYFGSCKWFNVSKGYGFVIDDITGEDLFVHQSNLNMQGFRSLDEGERVSYYIQERSNGK 110
Score = 46 (21.3 bits), Expect = 1.9e-12, Sum P(2) = 1.9e-12
Identities = 9/18 (50%), Positives = 10/18 (55%)
Query: 240 CFNCGK-PGHFARECTKV 256
CF CGK H A+ C V
Sbjct: 144 CFRCGKFATHKAKSCPNV 161
Score = 45 (20.9 bits), Expect = 2.4e-12, Sum P(2) = 2.4e-12
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 190 CFKCGGYG-HLARDC 203
CF+CG + H A+ C
Sbjct: 144 CFRCGKFATHKAKSC 158
Score = 41 (19.5 bits), Expect = 6.2e-12, Sum P(2) = 6.2e-12
Identities = 8/30 (26%), Positives = 11/30 (36%)
Query: 224 HLARDCXXXXXXXXXSCFNCGKPGHFAREC 253
H A+ C C+ CG H + C
Sbjct: 153 HKAKSCPNVKTDAKV-CYTCGSEEHVSSIC 181
Score = 39 (18.8 bits), Expect = 1.0e-11, Sum P(2) = 1.0e-11
Identities = 9/36 (25%), Positives = 14/36 (38%)
Query: 168 HFARDCPRQQXXXXXXXXXXXXCFKCGGYGHLARDC 203
H A+ CP + C+ CG H++ C
Sbjct: 153 HKAKSCPNVKTDAKV-------CYTCGSEEHVSSIC 181
>UNIPROTKB|P92186 [details] [associations]
symbol:lin-28 "Protein lin-28" species:6239 "Caenorhabditis
elegans" [GO:0001708 "cell fate specification" evidence=IMP]
[GO:0005737 "cytoplasm" evidence=IDA] InterPro:IPR001878
InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00098 Pfam:PF00313
PRINTS:PR00050 PROSITE:PS50158 SMART:SM00343 SMART:SM00357
GO:GO:0007275 GO:GO:0001708 GO:GO:0002009 GO:GO:0005737
GO:GO:0018991 GO:GO:0006355 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0040034 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 Gene3D:4.10.60.10 SUPFAM:SSF57756 eggNOG:COG1278
HSSP:O54310 GO:GO:0070883 GO:GO:0007549 HOGENOM:HOG000113330
EMBL:U75912 EMBL:U75915 EMBL:Z81494 RefSeq:NP_001021085.1
RefSeq:NP_492281.2 UniGene:Cel.22515 ProteinModelPortal:P92186
SMR:P92186 DIP:DIP-40151N IntAct:P92186 STRING:P92186 PaxDb:P92186
PRIDE:P92186 EnsemblMetazoa:F02E9.2a GeneID:172626
KEGG:cel:CELE_F02E9.2 UCSC:F02E9.2a CTD:38639 WormBase:F02E9.2a
WormBase:F02E9.2b GeneTree:ENSGT00390000001177 InParanoid:P92186
OMA:FATHKAK NextBio:876317 Uniprot:P92186
Length = 227
Score = 135 (52.6 bits), Expect = 1.9e-12, Sum P(2) = 1.9e-12
Identities = 25/59 (42%), Positives = 37/59 (62%)
Query: 6 RSTGKVTWFDGAKGYGFIRPDDGGADLFVHQKSIKSDGYRTLYENQSVEFDVQLEADGK 64
R G WF+ +KGYGF+ D G DLFVHQ ++ G+R+L E + V + +Q ++GK
Sbjct: 52 RYFGSCKWFNVSKGYGFVIDDITGEDLFVHQSNLNMQGFRSLDEGERVSYYIQERSNGK 110
Score = 46 (21.3 bits), Expect = 1.9e-12, Sum P(2) = 1.9e-12
Identities = 9/18 (50%), Positives = 10/18 (55%)
Query: 240 CFNCGK-PGHFARECTKV 256
CF CGK H A+ C V
Sbjct: 144 CFRCGKFATHKAKSCPNV 161
Score = 45 (20.9 bits), Expect = 2.4e-12, Sum P(2) = 2.4e-12
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 190 CFKCGGYG-HLARDC 203
CF+CG + H A+ C
Sbjct: 144 CFRCGKFATHKAKSC 158
Score = 41 (19.5 bits), Expect = 6.2e-12, Sum P(2) = 6.2e-12
Identities = 8/30 (26%), Positives = 11/30 (36%)
Query: 224 HLARDCXXXXXXXXXSCFNCGKPGHFAREC 253
H A+ C C+ CG H + C
Sbjct: 153 HKAKSCPNVKTDAKV-CYTCGSEEHVSSIC 181
Score = 39 (18.8 bits), Expect = 1.0e-11, Sum P(2) = 1.0e-11
Identities = 9/36 (25%), Positives = 14/36 (38%)
Query: 168 HFARDCPRQQXXXXXXXXXXXXCFKCGGYGHLARDC 203
H A+ CP + C+ CG H++ C
Sbjct: 153 HKAKSCPNVKTDAKV-------CYTCGSEEHVSSIC 181
>UNIPROTKB|P0A978 [details] [associations]
symbol:cspG species:83333 "Escherichia coli K-12"
[GO:0009409 "response to cold" evidence=IDA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006950 "response
to stress" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR002059 InterPro:IPR011129
InterPro:IPR012156 Pfam:PF00313 PIRSF:PIRSF002599 PRINTS:PR00050
SMART:SM00357 Prosite:PS00352 GO:GO:0005737 GO:GO:0006355
EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0003677 GO:GO:0009409 GO:GO:0006351
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 eggNOG:COG1278 HOGENOM:HOG000070674 KO:K03704
OMA:AWEDEEV EMBL:D63344 EMBL:AF003591 PIR:D64840 RefSeq:NP_415510.1
RefSeq:YP_489262.1 ProteinModelPortal:P0A978 SMR:P0A978
DIP:DIP-47938N IntAct:P0A978 MINT:MINT-1247768 PRIDE:P0A978
EnsemblBacteria:EBESCT00000003528 EnsemblBacteria:EBESCT00000016965
GeneID:12931923 GeneID:945591 KEGG:ecj:Y75_p0962 KEGG:eco:b0990
PATRIC:32117205 EchoBASE:EB3993 EcoGene:EG14243
ProtClustDB:PRK09890 BioCyc:EcoCyc:G6511-MONOMER
BioCyc:ECOL316407:JW0974-MONOMER Genevestigator:P0A978
Uniprot:P0A978
Length = 70
Score = 165 (63.1 bits), Expect = 2.4e-12, P = 2.4e-12
Identities = 33/66 (50%), Positives = 43/66 (65%)
Query: 6 RSTGKVTWFDGAKGYGFIRPDDGGADLFVHQKSIKSDGYRTLYENQSVEFDVQLEADGKY 65
+ TG V WF+ KG+GFI PDDG D+FVH +I+S+ +RTL ENQ VEF ++ G
Sbjct: 4 KMTGLVKWFNADKGFGFITPDDGSKDVFVHFTAIQSNEFRTLNENQKVEFSIEQGQRGPA 63
Query: 66 QALDVT 71
A VT
Sbjct: 64 AANVVT 69
>TIGR_CMR|CPS_2895 [details] [associations]
symbol:CPS_2895 "cold shock-like protein CspD"
species:167879 "Colwellia psychrerythraea 34H" [GO:0006355
"regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0009409 "response to cold" evidence=ISS] InterPro:IPR002059
InterPro:IPR011129 InterPro:IPR012156 InterPro:IPR012751
Pfam:PF00313 PIRSF:PIRSF002599 PRINTS:PR00050 SMART:SM00357
Prosite:PS00352 GO:GO:0005737 GO:GO:0006950 GO:GO:0006355
GO:GO:0003677 EMBL:CP000083 GenomeReviews:CP000083_GR
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 eggNOG:COG1278 HOGENOM:HOG000070674 KO:K03704
OMA:QVVRFDV TIGRFAMs:TIGR02381 RefSeq:YP_269596.1
ProteinModelPortal:Q480C3 SMR:Q480C3 STRING:Q480C3 GeneID:3518797
KEGG:cps:CPS_2895 PATRIC:21468815
BioCyc:CPSY167879:GI48-2945-MONOMER Uniprot:Q480C3
Length = 72
Score = 165 (63.1 bits), Expect = 2.4e-12, P = 2.4e-12
Identities = 31/66 (46%), Positives = 41/66 (62%)
Query: 9 GKVTWFDGAKGYGFIRPDDGGADLFVHQKSIKSDGYRTLYENQSVEFDVQLEADGKYQAL 68
G V WF+ AKG+GFIRPD GG D+F H +I+ DGYRTL Q V++++ G + A
Sbjct: 4 GTVKWFNNAKGFGFIRPDSGGEDIFAHYSTIEMDGYRTLKAGQDVDYELNDGPKGHHAAS 63
Query: 69 DVTAPG 74
A G
Sbjct: 64 IKLADG 69
>UNIPROTKB|Q5EB47 [details] [associations]
symbol:lin28a "Protein lin-28 homolog A" species:8364
"Xenopus (Silurana) tropicalis" [GO:0000932 "cytoplasmic mRNA
processing body" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0010494
"cytoplasmic stress granule" evidence=ISS] [GO:0010587 "miRNA
catabolic process" evidence=ISS] [GO:0019827 "stem cell
maintenance" evidence=ISS] [GO:0031054 "pre-miRNA processing"
evidence=ISS] [GO:0031123 "RNA 3'-end processing" evidence=ISS]
InterPro:IPR001878 InterPro:IPR002059 InterPro:IPR011129
Pfam:PF00098 Pfam:PF00313 PRINTS:PR00050 PROSITE:PS50158
SMART:SM00343 SMART:SM00357 GO:GO:0005634 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 GO:GO:0003723
GO:GO:0000932 GO:GO:0031054 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 HSSP:Q9H9Z2 Gene3D:4.10.60.10 SUPFAM:SSF57756
GO:GO:0019827 GO:GO:0010494 eggNOG:COG1278 CTD:79727
HOGENOM:HOG000047091 HOVERGEN:HBG081922 OrthoDB:EOG4640D4
GO:GO:0010587 GO:GO:0031123 EMBL:CR761690 EMBL:BC090084
RefSeq:NP_001015806.2 RefSeq:NP_001016266.1 UniGene:Str.45911
ProteinModelPortal:Q5EB47 SMR:Q5EB47 STRING:Q5EB47 GeneID:548523
KEGG:xtr:548523 Xenbase:XB-GENE-491384 Bgee:Q5EB47 Uniprot:Q5EB47
Length = 195
Score = 123 (48.4 bits), Expect = 2.8e-12, Sum P(2) = 2.8e-12
Identities = 30/84 (35%), Positives = 45/84 (53%)
Query: 6 RSTGKVTWFDGAKGYGFIR-PDDGGADL------FVHQKSIKSDGYRTLYENQSVEFDVQ 58
+ +G WF+ G+GF+ G DL FVHQ + +G+R+L E +SVEF +
Sbjct: 33 QGSGVCKWFNVRMGFGFLTMTKKEGTDLETPVDVFVHQSKLHMEGFRSLKEGESVEFTFK 92
Query: 59 LEADGKYQALDVTAPGGAPVHSSK 82
+ G ++ VT PGGAP S+
Sbjct: 93 KSSKG-LESTRVTGPGGAPCIGSE 115
Score = 54 (24.1 bits), Expect = 2.8e-12, Sum P(2) = 2.8e-12
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 240 CFNCGKPGHFAREC 253
C+NCG H A+EC
Sbjct: 133 CYNCGGLDHHAKEC 146
Score = 53 (23.7 bits), Expect = 3.6e-12, Sum P(2) = 3.6e-12
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 190 CFKCGGYGHLARDC 203
C+ CGG H A++C
Sbjct: 133 CYNCGGLDHHAKEC 146
Score = 39 (18.8 bits), Expect = 1.0e-10, Sum P(2) = 1.0e-10
Identities = 9/35 (25%), Positives = 13/35 (37%)
Query: 224 HLARDCXXXXXXXXXSCFNCGKPGHFARECTKVAN 258
H A++C C C P H +C A+
Sbjct: 141 HHAKECKLPPQPK--KCHFCQSPNHMVAQCPAKAS 173
>UNIPROTKB|P63848 [details] [associations]
symbol:cspA "Probable cold shock protein A" species:1773
"Mycobacterium tuberculosis" [GO:0005618 "cell wall" evidence=IDA]
[GO:0040007 "growth" evidence=IMP] InterPro:IPR002059
InterPro:IPR011129 InterPro:IPR012156 Pfam:PF00313
PIRSF:PIRSF002599 PRINTS:PR00050 SMART:SM00357 Prosite:PS00352
GO:GO:0005737 GO:GO:0040007 GO:GO:0005618 GO:GO:0006355
EMBL:AE000516 GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR
GO:GO:0003677 EMBL:BX842583 GO:GO:0006351 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR019844
eggNOG:COG1278 HOGENOM:HOG000070674 KO:K03704 PIR:A70564
RefSeq:NP_218165.1 RefSeq:NP_338297.1 RefSeq:YP_006517135.1
ProteinModelPortal:P63848 SMR:P63848 PRIDE:P63848
EnsemblBacteria:EBMYCT00000001507 EnsemblBacteria:EBMYCT00000071867
GeneID:13317256 GeneID:885837 GeneID:922742 KEGG:mtc:MT3750.1
KEGG:mtu:Rv3648c KEGG:mtv:RVBD_3648c PATRIC:18130006
TubercuList:Rv3648c OMA:AWEDEEV ProtClustDB:CLSK792621
Uniprot:P63848
Length = 67
Score = 163 (62.4 bits), Expect = 3.9e-12, P = 3.9e-12
Identities = 28/49 (57%), Positives = 36/49 (73%)
Query: 9 GKVTWFDGAKGYGFIRPDDGGADLFVHQKSIKSDGYRTLYENQSVEFDV 57
G V WF+ KG+GFI P+DG AD+FVH I+ G+RTL ENQ VEF++
Sbjct: 4 GTVKWFNAEKGFGFIAPEDGSADVFVHYTEIQGTGFRTLEENQKVEFEI 52
>UNIPROTKB|P0A9Y6 [details] [associations]
symbol:cspC species:83333 "Escherichia coli K-12"
[GO:0001072 "RNA binding transcription antitermination factor
activity" evidence=IDA] [GO:0060567 "negative regulation of
DNA-dependent transcription, termination" evidence=IDA] [GO:0003723
"RNA binding" evidence=IDA] [GO:0003697 "single-stranded DNA
binding" evidence=IDA] [GO:0031564 "transcription antitermination"
evidence=IDA] [GO:0016020 "membrane" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR002059 InterPro:IPR011129 InterPro:IPR012156
Pfam:PF00313 PIRSF:PIRSF002599 PRINTS:PR00050 SMART:SM00357
Prosite:PS00352 GO:GO:0005737 GO:GO:0016020 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
GO:GO:0006351 GO:GO:0003723 GO:GO:0003697 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR019844
eggNOG:COG1278 HOGENOM:HOG000070674 KO:K03704 GO:GO:0001072
GO:GO:0060567 EMBL:L28430 EMBL:D28496 PIR:S43618 RefSeq:NP_416337.1
RefSeq:YP_490084.1 ProteinModelPortal:P0A9Y6 SMR:P0A9Y6
DIP:DIP-36183N IntAct:P0A9Y6 MINT:MINT-1218847 SWISS-2DPAGE:P0A9Y6
PaxDb:P0A9Y6 PRIDE:P0A9Y6 EnsemblBacteria:EBESCT00000000185
EnsemblBacteria:EBESCT00000017479 GeneID:12934542 GeneID:946339
KEGG:ecj:Y75_p1798 KEGG:eco:b1823 PATRIC:32118965 EchoBASE:EB2120
EcoGene:EG12204 OMA:LEEGQHV ProtClustDB:PRK10943
BioCyc:EcoCyc:EG12204-MONOMER BioCyc:ECOL316407:JW1812-MONOMER
Genevestigator:P0A9Y6 Uniprot:P0A9Y6
Length = 69
Score = 162 (62.1 bits), Expect = 5.0e-12, P = 5.0e-12
Identities = 31/69 (44%), Positives = 48/69 (69%)
Query: 4 LTRSTGKVTWFDGAKGYGFIRPDDGGADLFVHQKSIKSDGYRTLYENQSVEFDVQLEADG 63
+ + G+V WF+ +KG+GFI P DG D+FVH +I+ +G++TL E Q+VEF++Q G
Sbjct: 1 MAKIKGQVKWFNESKGFGFITPADGSKDVFVHFSAIQGNGFKTLAEGQNVEFEIQDGQKG 60
Query: 64 KYQALDVTA 72
A++VTA
Sbjct: 61 P-AAVNVTA 68
>UNIPROTKB|P0A9X9 [details] [associations]
symbol:cspA species:83333 "Escherichia coli K-12"
[GO:0009409 "response to cold" evidence=IEP] [GO:0006950 "response
to stress" evidence=IEP] [GO:0003677 "DNA binding" evidence=IDA]
[GO:0003727 "single-stranded RNA binding" evidence=IDA] [GO:0003723
"RNA binding" evidence=IDA] [GO:0003697 "single-stranded DNA
binding" evidence=IDA] [GO:0060567 "negative regulation of
DNA-dependent transcription, termination" evidence=IDA] [GO:0001072
"RNA binding transcription antitermination factor activity"
evidence=IDA] [GO:0031564 "transcription antitermination"
evidence=IDA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEP;IDA;TAS] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR002059 InterPro:IPR011129 InterPro:IPR012156
Pfam:PF00313 PIRSF:PIRSF002599 PRINTS:PR00050 SMART:SM00357
Prosite:PS00352 GO:GO:0005737 EMBL:U00039 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0009409
GO:GO:0003727 GO:GO:0006351 GO:GO:0003697 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR019844
eggNOG:COG1278 HOGENOM:HOG000070674 KO:K03704 EMBL:M30139
EMBL:U60035 PIR:JH0201 RefSeq:NP_418012.1 RefSeq:YP_491880.1
PDB:1MJC PDB:2BH8 PDB:3MEF PDBsum:1MJC PDBsum:2BH8 PDBsum:3MEF
ProteinModelPortal:P0A9X9 SMR:P0A9X9 DIP:DIP-31862N IntAct:P0A9X9
MINT:MINT-1220153 PaxDb:P0A9X9 PRIDE:P0A9X9
EnsemblBacteria:EBESCT00000002447 EnsemblBacteria:EBESCT00000002448
EnsemblBacteria:EBESCT00000016761 GeneID:12933539 GeneID:948070
KEGG:ecj:Y75_p3621 KEGG:eco:b3556 PATRIC:32122584 EchoBASE:EB0164
EcoGene:EG10166 OMA:AHFRQIT ProtClustDB:PRK10354
BioCyc:EcoCyc:PD03695 BioCyc:ECOL316407:JW3525-MONOMER
EvolutionaryTrace:P0A9X9 Genevestigator:P0A9X9 GO:GO:0001072
GO:GO:0060567 Uniprot:P0A9X9
Length = 70
Score = 162 (62.1 bits), Expect = 5.0e-12, P = 5.0e-12
Identities = 29/58 (50%), Positives = 40/58 (68%)
Query: 6 RSTGKVTWFDGAKGYGFIRPDDGGADLFVHQKSIKSDGYRTLYENQSVEFDVQLEADG 63
+ TG V WF+ KG+GFI PDDG D+FVH +I++DGY++L E Q V F ++ A G
Sbjct: 4 KMTGIVKWFNADKGFGFITPDDGSKDVFVHFSAIQNDGYKSLDEGQKVSFTIESGAKG 61
>UNIPROTKB|Q9KL16 [details] [associations]
symbol:cspV "Cold shock protein CspV" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0006355
"regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0009409 "response to cold" evidence=ISS] InterPro:IPR002059
InterPro:IPR011129 InterPro:IPR012156 Pfam:PF00313
PIRSF:PIRSF002599 PRINTS:PR00050 SMART:SM00357 GO:GO:0005737
GO:GO:0006355 GO:GO:0003677 GO:GO:0009409 GO:GO:0006351
EMBL:AE003853 GenomeReviews:AE003853_GR Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 eggNOG:COG1278 KO:K03704
OMA:LNIKGHY EMBL:AF409091 PIR:E82399 RefSeq:NP_233318.1
ProteinModelPortal:Q9KL16 SMR:Q9KL16 DNASU:2612854 GeneID:2612854
KEGG:vch:VCA0933 PATRIC:20086396 ProtClustDB:CLSK2748081
Uniprot:Q9KL16
Length = 70
Score = 162 (62.1 bits), Expect = 5.0e-12, P = 5.0e-12
Identities = 33/68 (48%), Positives = 45/68 (66%)
Query: 5 TRSTGKVTWFDGAKGYGFIRPDDGGADLFVHQKSIKSDGYRTLYENQSVEFDVQLEADGK 64
T+ TG V WF+ KG+GF+ D+GG D+FVH SI+S+G++TL E Q V F V+ G
Sbjct: 3 TKMTGSVKWFNETKGFGFLTQDNGGNDVFVHFNSIQSEGFKTLAEGQRVSFIVEQGKKGP 62
Query: 65 YQALDVTA 72
QA +V A
Sbjct: 63 -QASNVVA 69
>TIGR_CMR|SPO_1275 [details] [associations]
symbol:SPO_1275 "cold shock family protein" species:246200
"Ruegeria pomeroyi DSS-3" [GO:0003677 "DNA binding" evidence=ISS]
[GO:0009409 "response to cold" evidence=ISS] InterPro:IPR002059
InterPro:IPR011129 InterPro:IPR012156 Pfam:PF00313
PIRSF:PIRSF002599 PRINTS:PR00050 SMART:SM00357 Prosite:PS00352
GO:GO:0005737 GO:GO:0006355 EMBL:CP000031 GenomeReviews:CP000031_GR
GO:GO:0003677 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 KO:K03704 OMA:KMRGKVS HOGENOM:HOG000070673
RefSeq:YP_166520.1 ProteinModelPortal:Q5LTY5 SMR:Q5LTY5
GeneID:3194159 KEGG:sil:SPO1275 PATRIC:23375855
ProtClustDB:CLSK759123 Uniprot:Q5LTY5
Length = 68
Score = 162 (62.1 bits), Expect = 5.0e-12, P = 5.0e-12
Identities = 30/63 (47%), Positives = 40/63 (63%)
Query: 8 TGKVTWFDGAKGYGFIRPDDGGADLFVHQKSIKSDGYRTLYENQSVEFDVQLEADGKYQA 67
TG V WF+ KGYGFI PDDGG D+FVH +++ G L +NQ V F++ DG+ A
Sbjct: 3 TGTVKWFNATKGYGFIAPDDGGKDVFVHISAVERSGLTGLADNQKVSFEMLDGRDGRKMA 62
Query: 68 LDV 70
D+
Sbjct: 63 GDI 65
>TIGR_CMR|VC_A0933 [details] [associations]
symbol:VC_A0933 "cold shock domain family protein"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0006355
"regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0009409 "response to cold" evidence=ISS] InterPro:IPR002059
InterPro:IPR011129 InterPro:IPR012156 Pfam:PF00313
PIRSF:PIRSF002599 PRINTS:PR00050 SMART:SM00357 GO:GO:0005737
GO:GO:0006355 GO:GO:0003677 GO:GO:0009409 GO:GO:0006351
EMBL:AE003853 GenomeReviews:AE003853_GR Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 eggNOG:COG1278 KO:K03704
OMA:LNIKGHY EMBL:AF409091 PIR:E82399 RefSeq:NP_233318.1
ProteinModelPortal:Q9KL16 SMR:Q9KL16 DNASU:2612854 GeneID:2612854
KEGG:vch:VCA0933 PATRIC:20086396 ProtClustDB:CLSK2748081
Uniprot:Q9KL16
Length = 70
Score = 162 (62.1 bits), Expect = 5.0e-12, P = 5.0e-12
Identities = 33/68 (48%), Positives = 45/68 (66%)
Query: 5 TRSTGKVTWFDGAKGYGFIRPDDGGADLFVHQKSIKSDGYRTLYENQSVEFDVQLEADGK 64
T+ TG V WF+ KG+GF+ D+GG D+FVH SI+S+G++TL E Q V F V+ G
Sbjct: 3 TKMTGSVKWFNETKGFGFLTQDNGGNDVFVHFNSIQSEGFKTLAEGQRVSFIVEQGKKGP 62
Query: 65 YQALDVTA 72
QA +V A
Sbjct: 63 -QASNVVA 69
>UNIPROTKB|Q45KJ4 [details] [associations]
symbol:LIN28B "Protein lin-28 homolog B" species:9031
"Gallus gallus" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0031054 "pre-miRNA
processing" evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA] [GO:0010587 "miRNA catabolic process" evidence=ISS]
[GO:0031123 "RNA 3'-end processing" evidence=ISS]
InterPro:IPR001878 InterPro:IPR002059 InterPro:IPR011129
Pfam:PF00098 Pfam:PF00313 PRINTS:PR00050 PROSITE:PS50158
SMART:SM00343 SMART:SM00357 GO:GO:0005739 GO:GO:0005634
GO:GO:0006355 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0003723 GO:GO:0031054 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 HSSP:Q9H9Z2 Gene3D:4.10.60.10 SUPFAM:SSF57756
eggNOG:COG1278 GeneTree:ENSGT00390000001177 HOGENOM:HOG000047091
HOVERGEN:HBG081922 OrthoDB:EOG4640D4 GO:GO:0010587 GO:GO:0031123
EMBL:DQ127227 IPI:IPI00655492 RefSeq:NP_001029990.1
UniGene:Gga.14055 ProteinModelPortal:Q45KJ4 SMR:Q45KJ4
Ensembl:ENSGALT00000024860 GeneID:421786 KEGG:gga:421786 CTD:389421
InParanoid:Q45KJ4 OMA:GGHGCTS NextBio:20824507 Uniprot:Q45KJ4
Length = 250
Score = 126 (49.4 bits), Expect = 5.9e-12, Sum P(2) = 5.9e-12
Identities = 29/86 (33%), Positives = 45/86 (52%)
Query: 4 LTRSTGKVTWFDGAKGYGFIR-------PDDGGADLFVHQKSIKSDGYRTLYENQSVEFD 56
L G WF+ G+GFI P + D+FVHQ + +G+R+L E + VEF
Sbjct: 27 LWHGAGHCKWFNVRMGFGFISMSSREGSPLESPVDVFVHQSKLYMEGFRSLKEGEPVEFT 86
Query: 57 VQLEADGKYQALDVTAPGGAPVHSSK 82
+ + G +++ VT PGG+P S+
Sbjct: 87 YKKSSKG-LESIRVTGPGGSPCLGSE 111
Score = 55 (24.4 bits), Expect = 5.9e-12, Sum P(2) = 5.9e-12
Identities = 8/15 (53%), Positives = 11/15 (73%)
Query: 240 CFNCGKPGHFARECT 254
C+NCG H A+EC+
Sbjct: 129 CYNCGGLDHHAKECS 143
Score = 53 (23.7 bits), Expect = 9.5e-12, Sum P(2) = 9.5e-12
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 190 CFKCGGYGHLARDC 203
C+ CGG H A++C
Sbjct: 129 CYNCGGLDHHAKEC 142
>UNIPROTKB|P36995 [details] [associations]
symbol:cspB species:83333 "Escherichia coli K-12"
[GO:0003723 "RNA binding" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0009409 "response
to cold" evidence=IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006950 "response to stress"
evidence=IEA;IEP] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] InterPro:IPR002059 InterPro:IPR011129
InterPro:IPR012156 Pfam:PF00313 PIRSF:PIRSF002599 PRINTS:PR00050
SMART:SM00357 Prosite:PS00352 GO:GO:0005737 GO:GO:0006355
EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0009409 GO:GO:0006351 GO:GO:0003723
GO:GO:0003697 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 eggNOG:COG1278 HOGENOM:HOG000070674 KO:K03704
EMBL:L28429 EMBL:AF003590 PIR:S43617 RefSeq:NP_416075.1
RefSeq:YP_489821.1 ProteinModelPortal:P36995 SMR:P36995
DIP:DIP-9334N IntAct:P36995 MINT:MINT-1241665 PaxDb:P36995
EnsemblBacteria:EBESCT00000000475 EnsemblBacteria:EBESCT00000016617
GeneID:12930135 GeneID:946091 KEGG:ecj:Y75_p1533 KEGG:eco:b1557
PATRIC:32118416 EchoBASE:EB2119 EcoGene:EG12203 OMA:ANVFRRN
ProtClustDB:CLSK891756 BioCyc:EcoCyc:EG12203-MONOMER
BioCyc:ECOL316407:JW1549-MONOMER Genevestigator:P36995
Uniprot:P36995
Length = 71
Score = 161 (61.7 bits), Expect = 6.4e-12, P = 6.4e-12
Identities = 29/58 (50%), Positives = 39/58 (67%)
Query: 6 RSTGKVTWFDGAKGYGFIRPDDGGADLFVHQKSIKSDGYRTLYENQSVEFDVQLEADG 63
+ TG V WF+ KG+GFI P DG D+FVH +I++D YRTL+E Q V F ++ A G
Sbjct: 4 KMTGLVKWFNADKGFGFISPVDGSKDVFVHFSAIQNDNYRTLFEGQKVTFSIESGAKG 61
>UNIPROTKB|E1BHM3 [details] [associations]
symbol:LIN28A "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR001878
InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00098 Pfam:PF00313
PRINTS:PR00050 PROSITE:PS50158 SMART:SM00343 SMART:SM00357
GO:GO:0006355 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
Gene3D:4.10.60.10 SUPFAM:SSF57756 GeneTree:ENSGT00390000001177
CTD:79727 OMA:GVGVCKW EMBL:DAAA02006373 IPI:IPI00718151
RefSeq:NP_001179986.1 UniGene:Bt.106487 ProteinModelPortal:E1BHM3
PRIDE:E1BHM3 Ensembl:ENSBTAT00000004196 GeneID:614997
KEGG:bta:614997 NextBio:20899397 Uniprot:E1BHM3
Length = 205
Score = 121 (47.7 bits), Expect = 6.5e-12, Sum P(2) = 6.5e-12
Identities = 28/80 (35%), Positives = 42/80 (52%)
Query: 3 QLTRSTGKVTWFDGAKGYGFIRPD-------DGGADLFVHQKSIKSDGYRTLYENQSVEF 55
QL G WF+ G+GF+ D D+FVHQ + +G+R+L E ++VEF
Sbjct: 32 QLLHGAGICKWFNVRMGFGFLSMTARAGVALDPPVDVFVHQSKLHMEGFRSLKEGEAVEF 91
Query: 56 DVQLEADGKYQALDVTAPGG 75
+ A G +++ VT PGG
Sbjct: 92 TFKKSAKG-LESIRVTGPGG 110
Score = 54 (24.1 bits), Expect = 6.5e-12, Sum P(2) = 6.5e-12
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 240 CFNCGKPGHFAREC 253
C+NCG H A+EC
Sbjct: 135 CYNCGGLDHHAKEC 148
Score = 53 (23.7 bits), Expect = 8.3e-12, Sum P(2) = 8.3e-12
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 190 CFKCGGYGHLARDC 203
C+ CGG H A++C
Sbjct: 135 CYNCGGLDHHAKEC 148
>UNIPROTKB|B1PXG0 [details] [associations]
symbol:LIN28 "LIN28" species:9823 "Sus scrofa" [GO:0060964
"regulation of gene silencing by miRNA" evidence=IEA] [GO:0045727
"positive regulation of translation" evidence=IEA] [GO:0045686
"negative regulation of glial cell differentiation" evidence=IEA]
[GO:0045666 "positive regulation of neuron differentiation"
evidence=IEA] [GO:0035198 "miRNA binding" evidence=IEA] [GO:0031369
"translation initiation factor binding" evidence=IEA] [GO:0031123
"RNA 3'-end processing" evidence=IEA] [GO:0031054 "pre-miRNA
processing" evidence=IEA] [GO:0019827 "stem cell maintenance"
evidence=IEA] [GO:0010587 "miRNA catabolic process" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0007281
"germ cell development" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0000932
"cytoplasmic mRNA processing body" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR001878 InterPro:IPR002059
InterPro:IPR011129 Pfam:PF00098 Pfam:PF00313 PRINTS:PR00050
PROSITE:PS50158 SMART:SM00343 SMART:SM00357 GO:GO:0005730
GO:GO:0006355 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0003729 GO:GO:0007281 GO:GO:0045666 GO:GO:0035198
GO:GO:0000932 GO:GO:0031054 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 Gene3D:4.10.60.10 SUPFAM:SSF57756 GO:GO:0045727
GO:GO:0019827 GO:GO:0010494 GeneTree:ENSGT00390000001177 CTD:79727
eggNOG:NOG244191 HOGENOM:HOG000047091 HOVERGEN:HBG081922
OrthoDB:EOG4640D4 GO:GO:0010587 GO:GO:0031123 OMA:GVGVCKW
GO:GO:0045686 EMBL:FP236394 EMBL:EU503118 RefSeq:NP_001116605.1
UniGene:Ssc.70783 SMR:B1PXG0 STRING:B1PXG0
Ensembl:ENSSSCT00000003951 GeneID:100142662 KEGG:ssc:100142662
Uniprot:B1PXG0
Length = 205
Score = 121 (47.7 bits), Expect = 6.5e-12, Sum P(2) = 6.5e-12
Identities = 28/80 (35%), Positives = 42/80 (52%)
Query: 3 QLTRSTGKVTWFDGAKGYGFIRPD-------DGGADLFVHQKSIKSDGYRTLYENQSVEF 55
QL G WF+ G+GF+ D D+FVHQ + +G+R+L E ++VEF
Sbjct: 32 QLLHGAGICKWFNVRMGFGFLSMTARAGVALDPPVDVFVHQSKLHMEGFRSLKEGEAVEF 91
Query: 56 DVQLEADGKYQALDVTAPGG 75
+ A G +++ VT PGG
Sbjct: 92 TFKKSAKG-LESIRVTGPGG 110
Score = 54 (24.1 bits), Expect = 6.5e-12, Sum P(2) = 6.5e-12
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 240 CFNCGKPGHFAREC 253
C+NCG H A+EC
Sbjct: 135 CYNCGGLDHHAKEC 148
Score = 53 (23.7 bits), Expect = 8.3e-12, Sum P(2) = 8.3e-12
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 190 CFKCGGYGHLARDC 203
C+ CGG H A++C
Sbjct: 135 CYNCGGLDHHAKEC 148
>UNIPROTKB|E2RD12 [details] [associations]
symbol:LIN28A "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0060964 "regulation of gene silencing by
miRNA" evidence=IEA] [GO:0045727 "positive regulation of
translation" evidence=IEA] [GO:0045686 "negative regulation of
glial cell differentiation" evidence=IEA] [GO:0045666 "positive
regulation of neuron differentiation" evidence=IEA] [GO:0035198
"miRNA binding" evidence=IEA] [GO:0031369 "translation initiation
factor binding" evidence=IEA] [GO:0031123 "RNA 3'-end processing"
evidence=IEA] [GO:0031054 "pre-miRNA processing" evidence=IEA]
[GO:0019827 "stem cell maintenance" evidence=IEA] [GO:0010587
"miRNA catabolic process" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=IEA] [GO:0007281 "germ cell development"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0003729
"mRNA binding" evidence=IEA] [GO:0000932 "cytoplasmic mRNA
processing body" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR001878 InterPro:IPR002059
InterPro:IPR011129 Pfam:PF00098 Pfam:PF00313 PRINTS:PR00050
PROSITE:PS50158 SMART:SM00343 SMART:SM00357 GO:GO:0005730
GO:GO:0006355 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0003729 GO:GO:0007281 GO:GO:0045666 GO:GO:0035198
GO:GO:0000932 GO:GO:0031054 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 Gene3D:4.10.60.10 SUPFAM:SSF57756 GO:GO:0045727
GO:GO:0019827 GO:GO:0010494 GeneTree:ENSGT00390000001177 CTD:79727
GO:GO:0010587 GO:GO:0031123 OMA:GVGVCKW GO:GO:0045686
EMBL:AAEX03001720 RefSeq:XP_854985.1 ProteinModelPortal:E2RD12
Ensembl:ENSCAFT00000019830 GeneID:612162 KEGG:cfa:612162
NextBio:20897695 Uniprot:E2RD12
Length = 206
Score = 121 (47.7 bits), Expect = 6.8e-12, Sum P(2) = 6.8e-12
Identities = 28/80 (35%), Positives = 42/80 (52%)
Query: 3 QLTRSTGKVTWFDGAKGYGFIRPD-------DGGADLFVHQKSIKSDGYRTLYENQSVEF 55
QL G WF+ G+GF+ D D+FVHQ + +G+R+L E ++VEF
Sbjct: 32 QLLHGAGICKWFNVRMGFGFLSMTARAGVALDPPVDVFVHQSKLHMEGFRSLKEGEAVEF 91
Query: 56 DVQLEADGKYQALDVTAPGG 75
+ A G +++ VT PGG
Sbjct: 92 TFKKSAKG-LESIRVTGPGG 110
Score = 54 (24.1 bits), Expect = 6.8e-12, Sum P(2) = 6.8e-12
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 240 CFNCGKPGHFAREC 253
C+NCG H A+EC
Sbjct: 135 CYNCGGLDHHAKEC 148
Score = 53 (23.7 bits), Expect = 8.7e-12, Sum P(2) = 8.7e-12
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 190 CFKCGGYGHLARDC 203
C+ CGG H A++C
Sbjct: 135 CYNCGGLDHHAKEC 148
>UNIPROTKB|Q9H9Z2 [details] [associations]
symbol:LIN28A "Protein lin-28 homolog A" species:9606 "Homo
sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003729 "mRNA
binding" evidence=IEA] [GO:0007281 "germ cell development"
evidence=IEA] [GO:0031369 "translation initiation factor binding"
evidence=IEA] [GO:0035198 "miRNA binding" evidence=IEA] [GO:0045666
"positive regulation of neuron differentiation" evidence=IEA]
[GO:0045686 "negative regulation of glial cell differentiation"
evidence=IEA] [GO:0045727 "positive regulation of translation"
evidence=IEA] [GO:0060964 "regulation of gene silencing by miRNA"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0003723 "RNA binding"
evidence=IDA] [GO:0010587 "miRNA catabolic process" evidence=IMP]
[GO:0019827 "stem cell maintenance" evidence=IMP] [GO:0005634
"nucleus" evidence=IDA] [GO:0031054 "pre-miRNA processing"
evidence=IMP] [GO:0031123 "RNA 3'-end processing" evidence=IMP]
[GO:0000932 "cytoplasmic mRNA processing body" evidence=IDA]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR001878 InterPro:IPR002059
InterPro:IPR011129 Pfam:PF00098 Pfam:PF00313 PRINTS:PR00050
PROSITE:PS50158 SMART:SM00343 SMART:SM00357 GO:GO:0005634
GO:GO:0005730 GO:GO:0006355 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0003729 GO:GO:0003723 GO:GO:0007281
GO:GO:0045666 GO:GO:0035198 GO:GO:0000932 GO:GO:0031054
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
Gene3D:4.10.60.10 SUPFAM:SSF57756 GO:GO:0045727 GO:GO:0019827
GO:GO:0010494 EMBL:AL513365 CTD:79727 eggNOG:NOG244191
HOGENOM:HOG000047091 HOVERGEN:HBG081922 OrthoDB:EOG4640D4
GO:GO:0010587 GO:GO:0031123 EMBL:AF521099 EMBL:AK022519
EMBL:BC028566 IPI:IPI00002948 RefSeq:NP_078950.1 UniGene:Hs.86154
PDB:2CQF PDB:2LI8 PDBsum:2CQF PDBsum:2LI8 ProteinModelPortal:Q9H9Z2
SMR:Q9H9Z2 IntAct:Q9H9Z2 STRING:Q9H9Z2 PhosphoSite:Q9H9Z2
DMDM:74752750 PaxDb:Q9H9Z2 PRIDE:Q9H9Z2 DNASU:79727
Ensembl:ENST00000254231 Ensembl:ENST00000326279 GeneID:79727
KEGG:hsa:79727 UCSC:uc001bmj.3 GeneCards:GC01P026737
HGNC:HGNC:15986 HPA:CAB020785 MIM:611043 neXtProt:NX_Q9H9Z2
PharmGKB:PA165751523 InParanoid:Q9H9Z2 OMA:GVGVCKW PhylomeDB:Q9H9Z2
EvolutionaryTrace:Q9H9Z2 GenomeRNAi:79727 NextBio:69098 Bgee:Q9H9Z2
CleanEx:HS_LIN28 Genevestigator:Q9H9Z2 GermOnline:ENSG00000131914
GO:GO:0045686 Uniprot:Q9H9Z2
Length = 209
Score = 121 (47.7 bits), Expect = 7.9e-12, Sum P(2) = 7.9e-12
Identities = 28/80 (35%), Positives = 42/80 (52%)
Query: 3 QLTRSTGKVTWFDGAKGYGFIRPD-------DGGADLFVHQKSIKSDGYRTLYENQSVEF 55
QL G WF+ G+GF+ D D+FVHQ + +G+R+L E ++VEF
Sbjct: 36 QLLHGAGICKWFNVRMGFGFLSMTARAGVALDPPVDVFVHQSKLHMEGFRSLKEGEAVEF 95
Query: 56 DVQLEADGKYQALDVTAPGG 75
+ A G +++ VT PGG
Sbjct: 96 TFKKSAKG-LESIRVTGPGG 114
Score = 54 (24.1 bits), Expect = 7.9e-12, Sum P(2) = 7.9e-12
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 240 CFNCGKPGHFAREC 253
C+NCG H A+EC
Sbjct: 139 CYNCGGLDHHAKEC 152
Score = 53 (23.7 bits), Expect = 1.0e-11, Sum P(2) = 1.0e-11
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 190 CFKCGGYGHLARDC 203
C+ CGG H A++C
Sbjct: 139 CYNCGGLDHHAKEC 152
>MGI|MGI:1890546 [details] [associations]
symbol:Lin28a "lin-28 homolog A (C. elegans)" species:10090
"Mus musculus" [GO:0000932 "cytoplasmic mRNA processing body"
evidence=ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=ISO;IDA] [GO:0003729 "mRNA binding" evidence=IDA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=ISO;IDA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0007281 "germ cell development" evidence=IGI;IMP] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=ISO] [GO:0010586 "miRNA metabolic process"
evidence=IDA] [GO:0010587 "miRNA catabolic process"
evidence=ISO;IMP] [GO:0019827 "stem cell maintenance" evidence=ISO]
[GO:0031047 "gene silencing by RNA" evidence=IEA] [GO:0031054
"pre-miRNA processing" evidence=ISO;IMP;IDA] [GO:0031123 "RNA
3'-end processing" evidence=ISO] [GO:0031369 "translation
initiation factor binding" evidence=IPI] [GO:0035198 "miRNA
binding" evidence=IDA] [GO:0045666 "positive regulation of neuron
differentiation" evidence=IDA] [GO:0045686 "negative regulation of
glial cell differentiation" evidence=IDA] [GO:0045727 "positive
regulation of translation" evidence=IDA] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0048863 "stem cell differentiation"
evidence=IMP] [GO:0060964 "regulation of gene silencing by miRNA"
evidence=IGI] InterPro:IPR001878 InterPro:IPR002059
InterPro:IPR011129 Pfam:PF00098 Pfam:PF00313 PRINTS:PR00050
PROSITE:PS50158 SMART:SM00343 SMART:SM00357 MGI:MGI:1890546
GO:GO:0005730 GO:GO:0006355 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0003729 GO:GO:0048863 GO:GO:0007281
GO:GO:0045666 GO:GO:0035198 GO:GO:0000932 GO:GO:0031054
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
Gene3D:4.10.60.10 SUPFAM:SSF57756 GO:GO:0045727 GO:GO:0019827
GO:GO:0010494 GO:GO:0060964 GeneTree:ENSGT00390000001177 CTD:79727
eggNOG:NOG244191 HOGENOM:HOG000047091 HOVERGEN:HBG081922
OrthoDB:EOG4640D4 GO:GO:0010587 GO:GO:0031123 OMA:GVGVCKW
GO:GO:0045686 EMBL:AF521097 EMBL:BC068304 IPI:IPI00170180
RefSeq:NP_665832.1 UniGene:Mm.302567 PDB:3TRZ PDB:3TS0 PDB:3TS2
PDBsum:3TRZ PDBsum:3TS0 PDBsum:3TS2 ProteinModelPortal:Q8K3Y3
SMR:Q8K3Y3 DIP:DIP-48573N STRING:Q8K3Y3 PhosphoSite:Q8K3Y3
PRIDE:Q8K3Y3 Ensembl:ENSMUST00000051674 GeneID:83557 KEGG:mmu:83557
UCSC:uc008vdw.1 InParanoid:Q8K3Y3 NextBio:350634 Bgee:Q8K3Y3
CleanEx:MM_LIN28 Genevestigator:Q8K3Y3
GermOnline:ENSMUSG00000050966 Uniprot:Q8K3Y3
Length = 209
Score = 121 (47.7 bits), Expect = 7.9e-12, Sum P(2) = 7.9e-12
Identities = 28/80 (35%), Positives = 42/80 (52%)
Query: 3 QLTRSTGKVTWFDGAKGYGFIRPD-------DGGADLFVHQKSIKSDGYRTLYENQSVEF 55
QL G WF+ G+GF+ D D+FVHQ + +G+R+L E ++VEF
Sbjct: 36 QLLHGAGICKWFNVRMGFGFLSMTARAGVALDPPVDVFVHQSKLHMEGFRSLKEGEAVEF 95
Query: 56 DVQLEADGKYQALDVTAPGG 75
+ A G +++ VT PGG
Sbjct: 96 TFKKSAKG-LESIRVTGPGG 114
Score = 54 (24.1 bits), Expect = 7.9e-12, Sum P(2) = 7.9e-12
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 240 CFNCGKPGHFAREC 253
C+NCG H A+EC
Sbjct: 139 CYNCGGLDHHAKEC 152
Score = 53 (23.7 bits), Expect = 1.0e-11, Sum P(2) = 1.0e-11
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 190 CFKCGGYGHLARDC 203
C+ CGG H A++C
Sbjct: 139 CYNCGGLDHHAKEC 152
>RGD|1566408 [details] [associations]
symbol:Lin28a "lin-28 homolog A (C. elegans)" species:10116
"Rattus norvegicus" [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IEA;ISO] [GO:0003674 "molecular_function" evidence=ND]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=ISO] [GO:0003729 "mRNA binding" evidence=IEA;ISO]
[GO:0005575 "cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005730 "nucleolus" evidence=IEA;ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0007281 "germ cell development"
evidence=IEA;ISO] [GO:0008150 "biological_process" evidence=ND]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA;ISO] [GO:0010586 "miRNA
metabolic process" evidence=ISO] [GO:0010587 "miRNA catabolic
process" evidence=IEA;ISO] [GO:0019827 "stem cell maintenance"
evidence=IEA;ISO] [GO:0031054 "pre-miRNA processing"
evidence=IEA;ISO] [GO:0031123 "RNA 3'-end processing"
evidence=IEA;ISO] [GO:0031369 "translation initiation factor
binding" evidence=IEA;ISO] [GO:0035198 "miRNA binding"
evidence=IEA;ISO] [GO:0045666 "positive regulation of neuron
differentiation" evidence=IEA;ISO] [GO:0045686 "negative regulation
of glial cell differentiation" evidence=IEA;ISO] [GO:0045727
"positive regulation of translation" evidence=IEA;ISO] [GO:0048863
"stem cell differentiation" evidence=ISO] [GO:0060964 "regulation
of gene silencing by miRNA" evidence=IEA;ISO] InterPro:IPR001878
InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00098 Pfam:PF00313
PRINTS:PR00050 PROSITE:PS50158 SMART:SM00343 SMART:SM00357
RGD:1566408 GO:GO:0005730 GO:GO:0006355 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0003729 GO:GO:0007281 GO:GO:0045666
GO:GO:0035198 GO:GO:0000932 GO:GO:0031054 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 Gene3D:4.10.60.10
SUPFAM:SSF57756 GO:GO:0045727 GO:GO:0019827 GO:GO:0010494
EMBL:CH473968 CTD:79727 OrthoDB:EOG4640D4 GO:GO:0010587
GO:GO:0031123 OMA:GVGVCKW GO:GO:0045686 IPI:IPI00560264
RefSeq:NP_001102739.1 UniGene:Rn.147538 Ensembl:ENSRNOT00000020641
GeneID:500562 KEGG:rno:500562 UCSC:RGD:1566408 NextBio:706580
Uniprot:D3ZZA6
Length = 209
Score = 121 (47.7 bits), Expect = 7.9e-12, Sum P(2) = 7.9e-12
Identities = 28/80 (35%), Positives = 42/80 (52%)
Query: 3 QLTRSTGKVTWFDGAKGYGFIRPD-------DGGADLFVHQKSIKSDGYRTLYENQSVEF 55
QL G WF+ G+GF+ D D+FVHQ + +G+R+L E ++VEF
Sbjct: 36 QLLHGAGICKWFNVRMGFGFLSMTARAGVALDPPVDVFVHQSKLHMEGFRSLKEGEAVEF 95
Query: 56 DVQLEADGKYQALDVTAPGG 75
+ A G +++ VT PGG
Sbjct: 96 TFKKSAKG-LESIRVTGPGG 114
Score = 54 (24.1 bits), Expect = 7.9e-12, Sum P(2) = 7.9e-12
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 240 CFNCGKPGHFAREC 253
C+NCG H A+EC
Sbjct: 139 CYNCGGLDHHAKEC 152
Score = 53 (23.7 bits), Expect = 1.0e-11, Sum P(2) = 1.0e-11
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 190 CFKCGGYGHLARDC 203
C+ CGG H A++C
Sbjct: 139 CYNCGGLDHHAKEC 152
>UNIPROTKB|Q48JS5 [details] [associations]
symbol:capA "Cold shock protein CapA" species:264730
"Pseudomonas syringae pv. phaseolicola 1448A" [GO:0003677 "DNA
binding" evidence=ISS] [GO:0009409 "response to cold" evidence=ISS]
InterPro:IPR002059 InterPro:IPR011129 InterPro:IPR012156
Pfam:PF00313 PIRSF:PIRSF002599 PRINTS:PR00050 SMART:SM00357
Prosite:PS00352 GO:GO:0005737 GO:GO:0006355 GO:GO:0003677
GO:GO:0009409 EMBL:CP000058 GenomeReviews:CP000058_GR
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 eggNOG:COG1278 HOGENOM:HOG000070674 KO:K03704
RefSeq:YP_274352.1 ProteinModelPortal:Q48JS5 SMR:Q48JS5
STRING:Q48JS5 GeneID:3557063 KEGG:psp:PSPPH_2133 PATRIC:19973494
OMA:GFIVPAN ProtClustDB:CLSK410037 Uniprot:Q48JS5
Length = 70
Score = 160 (61.4 bits), Expect = 8.2e-12, P = 8.2e-12
Identities = 29/50 (58%), Positives = 37/50 (74%)
Query: 6 RSTGKVTWFDGAKGYGFIRPDDGGADLFVHQKSIKSDGYRTLYENQSVEF 55
R TG V WF+ KG+GFI P GG DLFVH K+I+SDG+++L E Q+V F
Sbjct: 4 RQTGTVKWFNDEKGFGFITPQGGGDDLFVHFKAIESDGFKSLKEGQTVSF 53
>UNIPROTKB|F1NKY2 [details] [associations]
symbol:YBX1 "Nuclease-sensitive element-binding protein 1"
species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] InterPro:IPR002059 InterPro:IPR011129
Pfam:PF00313 PRINTS:PR00050 SMART:SM00357 Prosite:PS00352
GO:GO:0006355 GO:GO:0003677 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 InterPro:IPR019844 GeneTree:ENSGT00390000009256
EMBL:AADN02073477 IPI:IPI00819706 Ensembl:ENSGALT00000039197
ArrayExpress:F1NKY2 Uniprot:F1NKY2
Length = 269
Score = 161 (61.7 bits), Expect = 9.6e-12, P = 9.6e-12
Identities = 36/82 (43%), Positives = 51/82 (62%)
Query: 5 TRSTGKVTWFDGAKGYGFIRPDDGGADLFVHQKSIKSDG---Y-RTLYENQSVEFDVQLE 60
T+ G V WF+ GYGFI +D D+FVHQ +IK + Y R++ + ++VEFDV +E
Sbjct: 2 TKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDV-VE 60
Query: 61 ADGKYQALDVTAPGGAPVHSSK 82
+ +A +VT PGG PV SK
Sbjct: 61 GEKGAEAANVTGPGGVPVQGSK 82
>UNIPROTKB|F1NFC0 [details] [associations]
symbol:YBX1 "Nuclease-sensitive element-binding protein 1"
species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] InterPro:IPR002059 InterPro:IPR011129
Pfam:PF00313 PRINTS:PR00050 SMART:SM00357 Prosite:PS00352
GO:GO:0006355 GO:GO:0003677 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 InterPro:IPR019844 GeneTree:ENSGT00390000009256
IPI:IPI00587895 EMBL:AADN02073477 Ensembl:ENSGALT00000007741
ArrayExpress:F1NFC0 Uniprot:F1NFC0
Length = 273
Score = 161 (61.7 bits), Expect = 1.0e-11, P = 1.0e-11
Identities = 36/82 (43%), Positives = 51/82 (62%)
Query: 5 TRSTGKVTWFDGAKGYGFIRPDDGGADLFVHQKSIKSDG---Y-RTLYENQSVEFDVQLE 60
T+ G V WF+ GYGFI +D D+FVHQ +IK + Y R++ + ++VEFDV +E
Sbjct: 2 TKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDV-VE 60
Query: 61 ADGKYQALDVTAPGGAPVHSSK 82
+ +A +VT PGG PV SK
Sbjct: 61 GEKGAEAANVTGPGGVPVQGSK 82
>TIGR_CMR|SO_2628 [details] [associations]
symbol:SO_2628 "stress response protein CspD"
species:211586 "Shewanella oneidensis MR-1" [GO:0003697
"single-stranded DNA binding" evidence=ISS] [GO:0003723 "RNA
binding" evidence=ISS] [GO:0006950 "response to stress"
evidence=ISS] InterPro:IPR002059 InterPro:IPR011129
InterPro:IPR012156 InterPro:IPR012751 Pfam:PF00313
PIRSF:PIRSF002599 PRINTS:PR00050 SMART:SM00357 Prosite:PS00352
GO:GO:0005737 GO:GO:0006950 GO:GO:0006355 GO:GO:0003677
EMBL:AE014299 GenomeReviews:AE014299_GR Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR019844 HSSP:O54310
HOGENOM:HOG000070674 KO:K03704 TIGRFAMs:TIGR02381
RefSeq:NP_718213.1 ProteinModelPortal:Q8EDW3 SMR:Q8EDW3
GeneID:1170330 KEGG:son:SO_2628 PATRIC:23524883 OMA:DGCENDI
ProtClustDB:CLSK906807 Uniprot:Q8EDW3
Length = 68
Score = 159 (61.0 bits), Expect = 1.0e-11, P = 1.0e-11
Identities = 28/59 (47%), Positives = 40/59 (67%)
Query: 7 STGKVTWFDGAKGYGFIRPDDGGADLFVHQKSIKSDGYRTLYENQSVEFDVQLEADGKY 65
++G V WF+ AKG+GFI PD GG D+F H +I+ +GYRTL Q V+F+V+ G +
Sbjct: 2 ASGTVKWFNNAKGFGFICPDQGGEDVFAHYSTIEMEGYRTLKAGQPVQFEVEQGPKGMH 60
>UNIPROTKB|F1LTA0 [details] [associations]
symbol:F1LTA0 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313
PRINTS:PR00050 SMART:SM00357 Prosite:PS00352 GO:GO:0006355
GO:GO:0003677 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 GeneTree:ENSGT00390000009256 IPI:IPI00950360
Ensembl:ENSRNOT00000065381 ArrayExpress:F1LTA0 Uniprot:F1LTA0
Length = 236
Score = 159 (61.0 bits), Expect = 1.0e-11, P = 1.0e-11
Identities = 36/85 (42%), Positives = 54/85 (63%)
Query: 2 AQLTRSTGKVTWFDGAKGYGFIRPDDGGADLFVHQKSIKSDG---Y-RTLYENQSVEFDV 57
AQ ++ G V WF+ +GYGFI +D D+FVHQ +IK + Y R++ + ++VEF+V
Sbjct: 22 AQKSQVLGIVKWFNVRRGYGFINSNDTREDVFVHQTAIKKNKPRKYLRSVGDGETVEFEV 81
Query: 58 QLEADGKYQALDVTAPGGAPVHSSK 82
+E + +A +VT PGG PV SK
Sbjct: 82 -VEGEKGVEAANVTGPGGVPVQGSK 105
>UNIPROTKB|F1NS05 [details] [associations]
symbol:LIN28A "Protein lin-28 homolog A" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0000932
"cytoplasmic mRNA processing body" evidence=IEA] [GO:0003729 "mRNA
binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0007281 "germ cell development" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0010587 "miRNA
catabolic process" evidence=IEA] [GO:0019827 "stem cell
maintenance" evidence=IEA] [GO:0031054 "pre-miRNA processing"
evidence=IEA] [GO:0031123 "RNA 3'-end processing" evidence=IEA]
[GO:0031369 "translation initiation factor binding" evidence=IEA]
[GO:0035198 "miRNA binding" evidence=IEA] [GO:0045666 "positive
regulation of neuron differentiation" evidence=IEA] [GO:0045686
"negative regulation of glial cell differentiation" evidence=IEA]
[GO:0045727 "positive regulation of translation" evidence=IEA]
[GO:0060964 "regulation of gene silencing by miRNA" evidence=IEA]
InterPro:IPR001878 InterPro:IPR002059 InterPro:IPR011129
Pfam:PF00098 Pfam:PF00313 PRINTS:PR00050 PROSITE:PS50158
SMART:SM00343 SMART:SM00357 GO:GO:0005730 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 GO:GO:0003729
GO:GO:0048863 GO:GO:0035198 GO:GO:0000932 GO:GO:0031054
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
Gene3D:4.10.60.10 SUPFAM:SSF57756 GO:GO:0045727 GO:GO:0010494
GeneTree:ENSGT00390000001177 IPI:IPI00573980 GO:GO:0010587
GO:GO:0031123 OMA:GVGVCKW EMBL:AADN02051390
Ensembl:ENSGALT00000000529 Uniprot:F1NS05
Length = 202
Score = 119 (46.9 bits), Expect = 1.1e-11, Sum P(2) = 1.1e-11
Identities = 28/81 (34%), Positives = 45/81 (55%)
Query: 2 AQLTRSTGKVTWFDGAKGYGFIRPD-DGGA------DLFVHQKSIKSDGYRTLYENQSVE 54
+Q +G WF+ G+GF+ GGA D+FVHQ + +G+R+L E ++VE
Sbjct: 29 SQPLHGSGICKWFNVRMGFGFLSMTAKGGAMLDSPVDVFVHQSKLHMEGFRSLKEGEAVE 88
Query: 55 FDVQLEADGKYQALDVTAPGG 75
F + + G +++ VT PGG
Sbjct: 89 FTFKKSSKG-LESIRVTGPGG 108
Score = 54 (24.1 bits), Expect = 1.1e-11, Sum P(2) = 1.1e-11
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 240 CFNCGKPGHFAREC 253
C+NCG H A+EC
Sbjct: 133 CYNCGGLDHHAKEC 146
Score = 53 (23.7 bits), Expect = 1.3e-11, Sum P(2) = 1.3e-11
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 190 CFKCGGYGHLARDC 203
C+ CGG H A++C
Sbjct: 133 CYNCGGLDHHAKEC 146
>UNIPROTKB|Q45KJ5 [details] [associations]
symbol:LIN28A "Protein lin-28 homolog A" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0010587 "miRNA
catabolic process" evidence=ISS] [GO:0019827 "stem cell
maintenance" evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0031054 "pre-miRNA processing" evidence=ISS]
[GO:0031123 "RNA 3'-end processing" evidence=ISS] [GO:0003723 "RNA
binding" evidence=ISS] [GO:0000932 "cytoplasmic mRNA processing
body" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
InterPro:IPR001878 InterPro:IPR002059 InterPro:IPR011129
Pfam:PF00098 Pfam:PF00313 PRINTS:PR00050 PROSITE:PS50158
SMART:SM00343 SMART:SM00357 GO:GO:0005634 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 GO:GO:0003723
GO:GO:0000932 GO:GO:0031054 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 HSSP:Q9H9Z2 Gene3D:4.10.60.10 SUPFAM:SSF57756
GO:GO:0019827 GO:GO:0010494 EMBL:DQ127226 IPI:IPI00573980
RefSeq:NP_001026944.2 UniGene:Gga.21004 ProteinModelPortal:Q45KJ5
SMR:Q45KJ5 GeneID:428206 KEGG:gga:428206 CTD:79727 eggNOG:NOG244191
HOGENOM:HOG000047091 HOVERGEN:HBG081922 InParanoid:Q45KJ5
OrthoDB:EOG4640D4 NextBio:20829257 GO:GO:0010587 GO:GO:0031123
Uniprot:Q45KJ5
Length = 202
Score = 119 (46.9 bits), Expect = 1.1e-11, Sum P(2) = 1.1e-11
Identities = 28/81 (34%), Positives = 45/81 (55%)
Query: 2 AQLTRSTGKVTWFDGAKGYGFIRPD-DGGA------DLFVHQKSIKSDGYRTLYENQSVE 54
+Q +G WF+ G+GF+ GGA D+FVHQ + +G+R+L E ++VE
Sbjct: 29 SQPLHGSGICKWFNVRMGFGFLSMTAKGGAMLDSPVDVFVHQSKLHMEGFRSLKEGEAVE 88
Query: 55 FDVQLEADGKYQALDVTAPGG 75
F + + G +++ VT PGG
Sbjct: 89 FTFKKSSKG-LESIRVTGPGG 108
Score = 54 (24.1 bits), Expect = 1.1e-11, Sum P(2) = 1.1e-11
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 240 CFNCGKPGHFAREC 253
C+NCG H A+EC
Sbjct: 133 CYNCGGLDHHAKEC 146
Score = 53 (23.7 bits), Expect = 1.3e-11, Sum P(2) = 1.3e-11
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 190 CFKCGGYGHLARDC 203
C+ CGG H A++C
Sbjct: 133 CYNCGGLDHHAKEC 146
>UNIPROTKB|P91599 [details] [associations]
symbol:lin-28 "Protein lin-28" species:31234
"Caenorhabditis remanei" [GO:0001708 "cell fate specification"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS]
InterPro:IPR001878 InterPro:IPR002059 InterPro:IPR011129
Pfam:PF00098 Pfam:PF00313 PRINTS:PR00050 PROSITE:PS50158
SMART:SM00343 SMART:SM00357 GO:GO:0007275 GO:GO:0001708
GO:GO:0005737 GO:GO:0006355 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
Gene3D:4.10.60.10 SUPFAM:SSF57756 eggNOG:COG1278 HSSP:O54310
EMBL:U75913 EMBL:U75914 ProteinModelPortal:P91599 Uniprot:P91599
Length = 214
Score = 127 (49.8 bits), Expect = 1.1e-11, Sum P(2) = 1.1e-11
Identities = 24/59 (40%), Positives = 36/59 (61%)
Query: 6 RSTGKVTWFDGAKGYGFIRPDDGGADLFVHQKSIKSDGYRTLYENQSVEFDVQLEADGK 64
R G WF+ +KGYGF+ D DLFVHQ ++ G+R+L E + V + +Q ++GK
Sbjct: 48 RYYGSCKWFNVSKGYGFVIDDITREDLFVHQSNLNMQGFRSLDEGERVSYYIQERSNGK 106
Score = 46 (21.3 bits), Expect = 1.1e-11, Sum P(2) = 1.1e-11
Identities = 9/18 (50%), Positives = 10/18 (55%)
Query: 240 CFNCGK-PGHFARECTKV 256
CF CGK H A+ C V
Sbjct: 140 CFRCGKFATHKAKSCPNV 157
Score = 45 (20.9 bits), Expect = 1.4e-11, Sum P(2) = 1.4e-11
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 190 CFKCGGYG-HLARDC 203
CF+CG + H A+ C
Sbjct: 140 CFRCGKFATHKAKSC 154
Score = 41 (19.5 bits), Expect = 3.6e-11, Sum P(2) = 3.6e-11
Identities = 8/30 (26%), Positives = 11/30 (36%)
Query: 224 HLARDCXXXXXXXXXSCFNCGKPGHFAREC 253
H A+ C C+ CG H + C
Sbjct: 149 HKAKSCPNVKTDAKV-CYTCGSEEHVSSIC 177
Score = 39 (18.8 bits), Expect = 5.8e-11, Sum P(2) = 5.8e-11
Identities = 9/36 (25%), Positives = 14/36 (38%)
Query: 168 HFARDCPRQQXXXXXXXXXXXXCFKCGGYGHLARDC 203
H A+ CP + C+ CG H++ C
Sbjct: 149 HKAKSCPNVKTDAKV-------CYTCGSEEHVSSIC 177
>UNIPROTKB|P0A972 [details] [associations]
symbol:cspE species:83333 "Escherichia coli K-12"
[GO:0003723 "RNA binding" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0001072 "RNA
binding transcription antitermination factor activity"
evidence=IDA] [GO:0060567 "negative regulation of DNA-dependent
transcription, termination" evidence=IDA] [GO:0031564
"transcription antitermination" evidence=IDA] [GO:0008143 "poly(A)
RNA binding" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR002059 InterPro:IPR011129 InterPro:IPR012156
Pfam:PF00313 PIRSF:PIRSF002599 PRINTS:PR00050 SMART:SM00357
Prosite:PS00352 GO:GO:0005737 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0006351
GO:GO:0003697 EMBL:U82598 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 InterPro:IPR019844 EMBL:D28497 EMBL:S83396
eggNOG:COG1278 HOGENOM:HOG000070674 KO:K03704 GO:GO:0001072
GO:GO:0060567 OMA:WTKRTTI EMBL:L29054 PIR:S49050 RefSeq:NP_415156.1
RefSeq:YP_488914.1 ProteinModelPortal:P0A972 SMR:P0A972
DIP:DIP-47834N IntAct:P0A972 MINT:MINT-1221433 PaxDb:P0A972
PRIDE:P0A972 EnsemblBacteria:EBESCT00000004662
EnsemblBacteria:EBESCT00000018389 GeneID:12931648 GeneID:947024
KEGG:ecj:Y75_p0613 KEGG:eco:b0623 PATRIC:32116426 EchoBASE:EB2096
EcoGene:EG12179 ProtClustDB:PRK09507 BioCyc:EcoCyc:EG12179-MONOMER
BioCyc:ECOL316407:JW0618-MONOMER Genevestigator:P0A972
GO:GO:0008143 Uniprot:P0A972
Length = 69
Score = 158 (60.7 bits), Expect = 1.3e-11, P = 1.3e-11
Identities = 30/69 (43%), Positives = 47/69 (68%)
Query: 4 LTRSTGKVTWFDGAKGYGFIRPDDGGADLFVHQKSIKSDGYRTLYENQSVEFDVQLEADG 63
+++ G V WF+ +KG+GFI P+DG D+FVH +I+++G++TL E Q VEF++ A G
Sbjct: 1 MSKIKGNVKWFNESKGFGFITPEDGSKDVFVHFSAIQTNGFKTLAEGQRVEFEITNGAKG 60
Query: 64 KYQALDVTA 72
A +V A
Sbjct: 61 P-SAANVIA 68
>UNIPROTKB|F1M1Q9 [details] [associations]
symbol:F1M1Q9 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313
PRINTS:PR00050 SMART:SM00357 Prosite:PS00352 GO:GO:0006355
GO:GO:0003677 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 GeneTree:ENSGT00390000009256 IPI:IPI00949180
Ensembl:ENSRNOT00000068194 ArrayExpress:F1M1Q9 Uniprot:F1M1Q9
Length = 277
Score = 159 (61.0 bits), Expect = 1.9e-11, P = 1.9e-11
Identities = 36/85 (42%), Positives = 54/85 (63%)
Query: 2 AQLTRSTGKVTWFDGAKGYGFIRPDDGGADLFVHQKSIKSDG---Y-RTLYENQSVEFDV 57
AQ ++ G V WF+ +GYGFI +D D+FVHQ +IK + Y R++ + ++VEF+V
Sbjct: 35 AQKSQVLGIVKWFNVRRGYGFINSNDTREDVFVHQTAIKKNKPRKYLRSVGDGETVEFEV 94
Query: 58 QLEADGKYQALDVTAPGGAPVHSSK 82
+E + +A +VT PGG PV SK
Sbjct: 95 -VEGEKGVEAANVTGPGGVPVQGSK 118
>UNIPROTKB|Q06066 [details] [associations]
symbol:YBX1 "Nuclease-sensitive element-binding protein 1"
species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0071204 "histone pre-mRNA 3'end processing complex"
evidence=ISS] InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313
PRINTS:PR00050 SMART:SM00357 Prosite:PS00352 GO:GO:0005737
GO:GO:0006355 GO:GO:0008380 GO:GO:0003677 GO:GO:0006397
GO:GO:0006351 GO:GO:0003723 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 InterPro:IPR019844 HOGENOM:HOG000116439
HOVERGEN:HBG008757 OrthoDB:EOG46DM3W GO:GO:0071204 EMBL:L13032
IPI:IPI00587895 PIR:A48136 UniGene:Gga.4145
ProteinModelPortal:Q06066 SMR:Q06066 STRING:Q06066 PRIDE:Q06066
eggNOG:NOG326255 ArrayExpress:Q06066 Uniprot:Q06066
Length = 321
Score = 161 (61.7 bits), Expect = 2.0e-11, P = 2.0e-11
Identities = 36/82 (43%), Positives = 51/82 (62%)
Query: 5 TRSTGKVTWFDGAKGYGFIRPDDGGADLFVHQKSIKSDG---Y-RTLYENQSVEFDVQLE 60
T+ G V WF+ GYGFI +D D+FVHQ +IK + Y R++ + ++VEFDV +E
Sbjct: 54 TKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDV-VE 112
Query: 61 ADGKYQALDVTAPGGAPVHSSK 82
+ +A +VT PGG PV SK
Sbjct: 113 GEKGAEAANVTGPGGVPVQGSK 134
>MGI|MGI:99146 [details] [associations]
symbol:Ybx1 "Y box protein 1" species:10090 "Mus musculus"
[GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=IGI;ISO;IDA] [GO:0001701 "in utero
embryonic development" evidence=IGI;IMP] [GO:0002039 "p53 binding"
evidence=ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=ISO] [GO:0003697
"single-stranded DNA binding" evidence=ISO;IDA] [GO:0003723 "RNA
binding" evidence=ISO] [GO:0003729 "mRNA binding" evidence=ISO]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005576
"extracellular region" evidence=IEA] [GO:0005634 "nucleus"
evidence=IGI;ISO] [GO:0005689 "U12-type spliceosomal complex"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO;IDA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=ISO] [GO:0008284 "positive
regulation of cell proliferation" evidence=ISO] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=ISO] [GO:0030425 "dendrite" evidence=ISO] [GO:0030529
"ribonucleoprotein complex" evidence=ISO] [GO:0043066 "negative
regulation of apoptotic process" evidence=ISO] [GO:0043565
"sequence-specific DNA binding" evidence=ISO] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0046627 "negative regulation of insulin receptor
signaling pathway" evidence=ISO] [GO:0048471 "perinuclear region of
cytoplasm" evidence=ISO] [GO:0051154 "negative regulation of
striated muscle cell differentiation" evidence=IDA] [GO:0051781
"positive regulation of cell division" evidence=IEA] [GO:0070934
"CRD-mediated mRNA stabilization" evidence=ISO] [GO:0070937
"CRD-mediated mRNA stability complex" evidence=ISO] [GO:0071204
"histone pre-mRNA 3'end processing complex" evidence=IDA]
InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313 PRINTS:PR00050
SMART:SM00357 Prosite:PS00352 MGI:MGI:99146 GO:GO:0005576
GO:GO:0008380 GO:GO:0051781 GO:GO:0001701 GO:GO:0006397
GO:GO:0006351 GO:GO:0003723 GO:GO:0000122 GO:GO:0003697
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0010494
InterPro:IPR019844 eggNOG:COG1278 HOGENOM:HOG000116439
HOVERGEN:HBG008757 OrthoDB:EOG46DM3W GO:GO:0005689 GO:GO:0070937
GO:GO:0070934 GO:GO:0071204 GO:GO:0051154 CTD:4904 KO:K09276
OMA:VEGADNQ EMBL:M60419 EMBL:M62867 EMBL:X57621 EMBL:BC013450
EMBL:BC013620 EMBL:BC029747 EMBL:BC031472 EMBL:BC061634
IPI:IPI00120886 PIR:I58195 RefSeq:NP_035862.2 UniGene:Mm.258204
ProteinModelPortal:P62960 SMR:P62960 DIP:DIP-34256N IntAct:P62960
MINT:MINT-1212991 STRING:P62960 PhosphoSite:P62960 PaxDb:P62960
PRIDE:P62960 Ensembl:ENSMUST00000079644 GeneID:22608 KEGG:mmu:22608
InParanoid:P62960 ChiTaRS:YBX1 NextBio:302963 Bgee:P62960
CleanEx:MM_YBX1 Genevestigator:P62960 GermOnline:ENSMUSG00000028639
Uniprot:P62960
Length = 322
Score = 161 (61.7 bits), Expect = 2.0e-11, P = 2.0e-11
Identities = 36/82 (43%), Positives = 51/82 (62%)
Query: 5 TRSTGKVTWFDGAKGYGFIRPDDGGADLFVHQKSIKSDG---Y-RTLYENQSVEFDVQLE 60
T+ G V WF+ GYGFI +D D+FVHQ +IK + Y R++ + ++VEFDV +E
Sbjct: 55 TKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDV-VE 113
Query: 61 ADGKYQALDVTAPGGAPVHSSK 82
+ +A +VT PGG PV SK
Sbjct: 114 GEKGAEAANVTGPGGVPVQGSK 135
>RGD|61843 [details] [associations]
symbol:Ybx1 "Y box binding protein 1" species:10116 "Rattus
norvegicus" [GO:0000122 "negative regulation of transcription from
RNA polymerase II promoter" evidence=ISO;IDA] [GO:0001701 "in utero
embryonic development" evidence=ISO] [GO:0002039 "p53 binding"
evidence=IMP] [GO:0003677 "DNA binding" evidence=ISO] [GO:0003697
"single-stranded DNA binding" evidence=ISO;IDA] [GO:0003723 "RNA
binding" evidence=ISO;ISS] [GO:0003729 "mRNA binding" evidence=IPI]
[GO:0005576 "extracellular region" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005689 "U12-type spliceosomal
complex" evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO;IDA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=IPI] [GO:0008284 "positive
regulation of cell proliferation" evidence=IMP] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=ISO;ISS] [GO:0030425 "dendrite" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=ISO;ISS] [GO:0043066 "negative
regulation of apoptotic process" evidence=IDA] [GO:0043231
"intracellular membrane-bounded organelle" evidence=ISO] [GO:0043565
"sequence-specific DNA binding" evidence=IDA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IMP] [GO:0046627 "negative regulation of insulin receptor
signaling pathway" evidence=IMP] [GO:0048471 "perinuclear region of
cytoplasm" evidence=IDA] [GO:0051154 "negative regulation of
striated muscle cell differentiation" evidence=ISO] [GO:0051781
"positive regulation of cell division" evidence=IEA] [GO:0070934
"CRD-mediated mRNA stabilization" evidence=ISO;ISS] [GO:0070937
"CRD-mediated mRNA stability complex" evidence=ISO] [GO:0071204
"histone pre-mRNA 3'end processing complex" evidence=ISO;ISS]
InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313 PRINTS:PR00050
SMART:SM00357 Prosite:PS00352 RGD:61843 GO:GO:0048471 GO:GO:0043066
GO:GO:0005576 GO:GO:0008380 GO:GO:0008284 GO:GO:0051781
GO:GO:0030425 GO:GO:0043565 GO:GO:0003729 GO:GO:0006397
GO:GO:0045944 GO:GO:0006351 GO:GO:0000122 GO:GO:0003697
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0046627
GO:GO:0010494 GO:GO:0002039 InterPro:IPR019844 eggNOG:COG1278
HOGENOM:HOG000116439 HOVERGEN:HBG008757 OrthoDB:EOG46DM3W
GO:GO:0070934 GO:GO:0071204 CTD:4904 KO:K09276 EMBL:M57299
EMBL:M69138 EMBL:D13309 EMBL:BC072486 EMBL:BC098672 IPI:IPI00551815
PIR:A23677 RefSeq:NP_113751.3 UniGene:Rn.110976 UniGene:Rn.194909
ProteinModelPortal:P62961 SMR:P62961 IntAct:P62961
PhosphoSite:P62961 PRIDE:P62961 GeneID:500538 KEGG:rno:500538
UCSC:RGD:61843 InParanoid:P62961 NextBio:706472 ArrayExpress:P62961
Genevestigator:P62961 GermOnline:ENSRNOG00000032902 Uniprot:P62961
Length = 322
Score = 161 (61.7 bits), Expect = 2.0e-11, P = 2.0e-11
Identities = 36/82 (43%), Positives = 51/82 (62%)
Query: 5 TRSTGKVTWFDGAKGYGFIRPDDGGADLFVHQKSIKSDG---Y-RTLYENQSVEFDVQLE 60
T+ G V WF+ GYGFI +D D+FVHQ +IK + Y R++ + ++VEFDV +E
Sbjct: 55 TKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDV-VE 113
Query: 61 ADGKYQALDVTAPGGAPVHSSK 82
+ +A +VT PGG PV SK
Sbjct: 114 GEKGAEAANVTGPGGVPVQGSK 135
>RGD|6486912 [details] [associations]
symbol:LOC100912427 "nuclease-sensitive element-binding protein
1-like" species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] InterPro:IPR002059 InterPro:IPR011129
Pfam:PF00313 PRINTS:PR00050 SMART:SM00357 Prosite:PS00352
RGD:6486912 GO:GO:0006355 GO:GO:0003677 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR019844
GeneTree:ENSGT00390000009256 OMA:VEGADNQ IPI:IPI00568666
RefSeq:XP_003749029.1 Ensembl:ENSRNOT00000058700 GeneID:100912427
KEGG:rno:100912427 ArrayExpress:F1LPL7 Uniprot:F1LPL7
Length = 322
Score = 161 (61.7 bits), Expect = 2.0e-11, P = 2.0e-11
Identities = 36/82 (43%), Positives = 51/82 (62%)
Query: 5 TRSTGKVTWFDGAKGYGFIRPDDGGADLFVHQKSIKSDG---Y-RTLYENQSVEFDVQLE 60
T+ G V WF+ GYGFI +D D+FVHQ +IK + Y R++ + ++VEFDV +E
Sbjct: 55 TKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDV-VE 113
Query: 61 ADGKYQALDVTAPGGAPVHSSK 82
+ +A +VT PGG PV SK
Sbjct: 114 GEKGAEAANVTGPGGVPVQGSK 135
>UNIPROTKB|F1MZ92 [details] [associations]
symbol:YBX1 "Nuclease-sensitive element-binding protein 1"
species:9913 "Bos taurus" [GO:0071204 "histone pre-mRNA 3'end
processing complex" evidence=IEA] [GO:0070937 "CRD-mediated mRNA
stability complex" evidence=IEA] [GO:0070934 "CRD-mediated mRNA
stabilization" evidence=IEA] [GO:0051154 "negative regulation of
striated muscle cell differentiation" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005689 "U12-type
spliceosomal complex" evidence=IEA] [GO:0003697 "single-stranded
DNA binding" evidence=IEA] [GO:0001701 "in utero embryonic
development" evidence=IEA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313 PRINTS:PR00050
SMART:SM00357 Prosite:PS00352 GO:GO:0001701 GO:GO:0000122
GO:GO:0003697 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
GO:GO:0010494 InterPro:IPR019844 GeneTree:ENSGT00390000009256
GO:GO:0005689 GO:GO:0070937 GO:GO:0070934 GO:GO:0071204
GO:GO:0051154 IPI:IPI00689440 OMA:VEGADNQ EMBL:DAAA02009073
EMBL:DAAA02009074 EMBL:DAAA02009075 Ensembl:ENSBTAT00000023094
ArrayExpress:F1MZ92 Uniprot:F1MZ92
Length = 324
Score = 161 (61.7 bits), Expect = 2.0e-11, P = 2.0e-11
Identities = 36/82 (43%), Positives = 51/82 (62%)
Query: 5 TRSTGKVTWFDGAKGYGFIRPDDGGADLFVHQKSIKSDG---Y-RTLYENQSVEFDVQLE 60
T+ G V WF+ GYGFI +D D+FVHQ +IK + Y R++ + ++VEFDV +E
Sbjct: 57 TKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDV-VE 115
Query: 61 ADGKYQALDVTAPGGAPVHSSK 82
+ +A +VT PGG PV SK
Sbjct: 116 GEKGAEAANVTGPGGVPVQGSK 137
>UNIPROTKB|P67808 [details] [associations]
symbol:YBX1 "Nuclease-sensitive element-binding protein 1"
species:9913 "Bos taurus" [GO:0003697 "single-stranded DNA binding"
evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS] [GO:0070934
"CRD-mediated mRNA stabilization" evidence=ISS] [GO:0010494
"cytoplasmic stress granule" evidence=ISS] [GO:0071204 "histone
pre-mRNA 3'end processing complex" evidence=ISS] [GO:0030529
"ribonucleoprotein complex" evidence=ISS] [GO:0005576
"extracellular region" evidence=IEA] [GO:0051781 "positive
regulation of cell division" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313
PRINTS:PR00050 SMART:SM00357 Prosite:PS00352 GO:GO:0005576
GO:GO:0006355 GO:GO:0008380 GO:GO:0051781 GO:GO:0006397
GO:GO:0006351 GO:GO:0003723 GO:GO:0003697 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0010494 InterPro:IPR019844
eggNOG:COG1278 HOGENOM:HOG000116439 HOVERGEN:HBG008757
OrthoDB:EOG46DM3W GO:GO:0070934 GO:GO:0071204 EMBL:M95793
EMBL:BC105363 IPI:IPI00689440 PIR:I39382 PIR:JQ2292
RefSeq:NP_777240.1 UniGene:Bt.5332 ProteinModelPortal:P67808
SMR:P67808 STRING:P67808 PRIDE:P67808 GeneID:287023 KEGG:bta:287023
CTD:4904 InParanoid:P67808 KO:K09276 NextBio:20806545
Uniprot:P67808
Length = 324
Score = 161 (61.7 bits), Expect = 2.0e-11, P = 2.0e-11
Identities = 36/82 (43%), Positives = 51/82 (62%)
Query: 5 TRSTGKVTWFDGAKGYGFIRPDDGGADLFVHQKSIKSDG---Y-RTLYENQSVEFDVQLE 60
T+ G V WF+ GYGFI +D D+FVHQ +IK + Y R++ + ++VEFDV +E
Sbjct: 57 TKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDV-VE 115
Query: 61 ADGKYQALDVTAPGGAPVHSSK 82
+ +A +VT PGG PV SK
Sbjct: 116 GEKGAEAANVTGPGGVPVQGSK 137
>UNIPROTKB|P67809 [details] [associations]
symbol:YBX1 "Nuclease-sensitive element-binding protein 1"
species:9606 "Homo sapiens" [GO:0051781 "positive regulation of
cell division" evidence=IEA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0001701 "in utero embryonic development" evidence=IEA]
[GO:0003697 "single-stranded DNA binding" evidence=IEA] [GO:0051154
"negative regulation of striated muscle cell differentiation"
evidence=IEA] [GO:0005576 "extracellular region" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IDA;TAS] [GO:0005634 "nucleus"
evidence=NAS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IDA;NAS] [GO:0045892 "negative regulation
of transcription, DNA-dependent" evidence=NAS] [GO:0003723 "RNA
binding" evidence=IDA;NAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005689 "U12-type spliceosomal complex"
evidence=IDA] [GO:0071204 "histone pre-mRNA 3'end processing
complex" evidence=ISS] [GO:0070937 "CRD-mediated mRNA stability
complex" evidence=IDA] [GO:0010494 "cytoplasmic stress granule"
evidence=IDA] [GO:0070934 "CRD-mediated mRNA stabilization"
evidence=IMP] [GO:0030529 "ribonucleoprotein complex" evidence=IDA]
[GO:0003690 "double-stranded DNA binding" evidence=TAS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=TAS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=TAS] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0043231 "intracellular membrane-bounded organelle"
evidence=IDA] Reactome:REACT_71 InterPro:IPR002059
InterPro:IPR011129 Pfam:PF00313 PRINTS:PR00050 SMART:SM00357
Prosite:PS00352 GO:GO:0045892 GO:GO:0005576 GO:GO:0005654
GO:GO:0051781 GO:GO:0001701 Reactome:REACT_1675 GO:GO:0003700
GO:GO:0003723 GO:GO:0000122 GO:GO:0006366 GO:GO:0003690
GO:GO:0003697 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
Pathway_Interaction_DB:ptp1bpathway GO:GO:0000398 GO:GO:0010494
InterPro:IPR019844 eggNOG:COG1278 HOGENOM:HOG000116439
HOVERGEN:HBG008757 OrthoDB:EOG46DM3W GO:GO:0005689 GO:GO:0070937
GO:GO:0070934 GO:GO:0071204 GO:GO:0051154 PIR:I39382 CTD:4904
KO:K09276 EMBL:M24070 EMBL:J03827 EMBL:M83234 EMBL:L28809
EMBL:BC002411 EMBL:BC010430 EMBL:BC015208 EMBL:BC038384
EMBL:BC065571 EMBL:BC070084 EMBL:BC071708 EMBL:BC090038
EMBL:BC098435 EMBL:BC106045 IPI:IPI00031812 PIR:S34426
RefSeq:NP_004550.2 UniGene:Hs.473583 PDB:1H95 PDBsum:1H95
ProteinModelPortal:P67809 SMR:P67809 DIP:DIP-29405N IntAct:P67809
MINT:MINT-5001202 STRING:P67809 PhosphoSite:P67809 DMDM:54040031
PaxDb:P67809 PRIDE:P67809 DNASU:4904 Ensembl:ENST00000321358
GeneID:4904 KEGG:hsa:4904 UCSC:uc001chs.3 GeneCards:GC01P043148
H-InvDB:HIX0037767 H-InvDB:HIX0172381 HGNC:HGNC:8014 HPA:CAB005875
HPA:HPA040304 MIM:154030 neXtProt:NX_P67809 PharmGKB:PA31791
InParanoid:P67809 OMA:VEGADNQ PhylomeDB:P67809
EvolutionaryTrace:P67809 GenomeRNAi:4904 NextBio:18871
PMAP-CutDB:P67809 ArrayExpress:P67809 Bgee:P67809 CleanEx:HS_YBX1
Genevestigator:P67809 GermOnline:ENSG00000065978 Uniprot:P67809
Length = 324
Score = 161 (61.7 bits), Expect = 2.0e-11, P = 2.0e-11
Identities = 36/82 (43%), Positives = 51/82 (62%)
Query: 5 TRSTGKVTWFDGAKGYGFIRPDDGGADLFVHQKSIKSDG---Y-RTLYENQSVEFDVQLE 60
T+ G V WF+ GYGFI +D D+FVHQ +IK + Y R++ + ++VEFDV +E
Sbjct: 57 TKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDV-VE 115
Query: 61 ADGKYQALDVTAPGGAPVHSSK 82
+ +A +VT PGG PV SK
Sbjct: 116 GEKGAEAANVTGPGGVPVQGSK 137
>UNIPROTKB|Q28618 [details] [associations]
symbol:YBX1 "Nuclease-sensitive element-binding protein 1"
species:9986 "Oryctolagus cuniculus" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0030529 "ribonucleoprotein complex" evidence=ISS]
[GO:0070934 "CRD-mediated mRNA stabilization" evidence=ISS]
[GO:0071204 "histone pre-mRNA 3'end processing complex"
evidence=ISS] InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313
PRINTS:PR00050 SMART:SM00357 Prosite:PS00352 GO:GO:0005576
GO:GO:0006355 GO:GO:0008380 GO:GO:0003677 GO:GO:0051781
GO:GO:0006397 GO:GO:0006351 GO:GO:0003723 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0010494 InterPro:IPR019844
HOGENOM:HOG000116439 HOVERGEN:HBG008757 OrthoDB:EOG46DM3W
GO:GO:0070934 GO:GO:0071204 CTD:4904 eggNOG:NOG326255 EMBL:U16821
PIR:A55971 RefSeq:NP_001076254.1 UniGene:Ocu.6201
ProteinModelPortal:Q28618 SMR:Q28618 GeneID:100009583
Uniprot:Q28618
Length = 324
Score = 161 (61.7 bits), Expect = 2.0e-11, P = 2.0e-11
Identities = 36/82 (43%), Positives = 51/82 (62%)
Query: 5 TRSTGKVTWFDGAKGYGFIRPDDGGADLFVHQKSIKSDG---Y-RTLYENQSVEFDVQLE 60
T+ G V WF+ GYGFI +D D+FVHQ +IK + Y R++ + ++VEFDV +E
Sbjct: 57 TKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDV-VE 115
Query: 61 ADGKYQALDVTAPGGAPVHSSK 82
+ +A +VT PGG PV SK
Sbjct: 116 GEKGAEAANVTGPGGVPVQGSK 137
>UNIPROTKB|E2R1A0 [details] [associations]
symbol:YBX1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313
PRINTS:PR00050 SMART:SM00357 Prosite:PS00352 GO:GO:0006355
GO:GO:0003677 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 GeneTree:ENSGT00390000009256 EMBL:AAEX03009523
EMBL:AAEX03009522 ProteinModelPortal:E2R1A0 PRIDE:E2R1A0
Ensembl:ENSCAFT00000004010 OMA:EGNESAP NextBio:20892779
Uniprot:E2R1A0
Length = 359
Score = 161 (61.7 bits), Expect = 2.7e-11, P = 2.7e-11
Identities = 36/82 (43%), Positives = 51/82 (62%)
Query: 5 TRSTGKVTWFDGAKGYGFIRPDDGGADLFVHQKSIKSDG---Y-RTLYENQSVEFDVQLE 60
T+ G V WF+ GYGFI +D D+FVHQ +IK + Y R++ + ++VEFDV +E
Sbjct: 92 TKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDV-VE 150
Query: 61 ADGKYQALDVTAPGGAPVHSSK 82
+ +A +VT PGG PV SK
Sbjct: 151 GEKGAEAANVTGPGGVPVQGSK 172
>TIGR_CMR|CHY_0155 [details] [associations]
symbol:CHY_0155 "cold shock protein CspC" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0003677 "DNA
binding" evidence=ISS] [GO:0009409 "response to cold" evidence=ISS]
InterPro:IPR002059 InterPro:IPR011129 InterPro:IPR012156
Pfam:PF00313 PIRSF:PIRSF002599 PRINTS:PR00050 SMART:SM00357
Prosite:PS00352 GO:GO:0005737 GO:GO:0006355 GO:GO:0003677
EMBL:CP000141 GenomeReviews:CP000141_GR Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR019844
eggNOG:COG1278 HOGENOM:HOG000070674 KO:K03704
ProtClustDB:CLSK742705 RefSeq:YP_359027.1 ProteinModelPortal:Q3AFQ7
SMR:Q3AFQ7 STRING:Q3AFQ7 GeneID:3726793 KEGG:chy:CHY_0155
PATRIC:21273497 OMA:IETEGSE BioCyc:CHYD246194:GJCN-155-MONOMER
Uniprot:Q3AFQ7
Length = 65
Score = 155 (59.6 bits), Expect = 2.8e-11, P = 2.8e-11
Identities = 33/62 (53%), Positives = 42/62 (67%)
Query: 9 GKVTWFDGAKGYGFIRPDDGGADLFVHQKSIKSDGYRTLYENQSVEFDVQLEADGKYQAL 68
GKV WFD KGYGFI +DGG D+FVH +I+ G++TL E Q VEF++ A G QA
Sbjct: 3 GKVKWFDPKKGYGFIEREDGG-DVFVHFSAIQEKGFKTLEEGQRVEFEIVEGARGP-QAA 60
Query: 69 DV 70
+V
Sbjct: 61 NV 62
>UNIPROTKB|E2RPD7 [details] [associations]
symbol:CNBP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0008284
"positive regulation of cell proliferation" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0005783 "endoplasmic
reticulum" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR001878 Pfam:PF00098
PROSITE:PS50158 SMART:SM00343 GO:GO:0005783 GO:GO:0005829
GO:GO:0005634 GO:GO:0046872 GO:GO:0008284 GO:GO:0008270
GO:GO:0045944 GO:GO:0003676 Gene3D:4.10.60.10 SUPFAM:SSF57756
GeneTree:ENSGT00510000047065 OMA:CPNGQGG EMBL:AAEX03012021
UniGene:Cfa.4499 ProteinModelPortal:E2RPD7 PRIDE:E2RPD7
Ensembl:ENSCAFT00000006937 NextBio:20852160 Uniprot:E2RPD7
Length = 179
Score = 131 (51.2 bits), Expect = 3.1e-11, Sum P(2) = 3.1e-11
Identities = 24/64 (37%), Positives = 31/64 (48%)
Query: 190 CFKCGGYGHLARDCITXXXXXXXXXXXXXXXXXXHLARDCXXXXXXXXXSCFNCGKPGHF 249
C++CG GHLA+DC H+A+DC C+NCGKPGH
Sbjct: 54 CYRCGESGHLAKDC----DLQEDVEACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHL 109
Query: 250 AREC 253
AR+C
Sbjct: 110 ARDC 113
Score = 115 (45.5 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
Identities = 28/89 (31%), Positives = 38/89 (42%)
Query: 168 HFARDCPRQQXXXXXXXXXXXXCFKCGGYGHLARDCITXXXXXXXXXXXXXXXXXXHLAR 227
H A+DC Q+ C+ CG GH+A+DC HLAR
Sbjct: 62 HLAKDCDLQEDVEA--------CYNCGRGGHIAKDC--KEPKREREQCCYNCGKPGHLAR 111
Query: 228 DCXXXXXXXXXSCFNCGKPGHFARECTKV 256
DC C++CG+ GH ++CTKV
Sbjct: 112 DCDHADEQ---KCYSCGEFGHIQKDCTKV 137
Score = 99 (39.9 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 20/65 (30%), Positives = 29/65 (44%)
Query: 190 CFKCGGYGHLARDCITXXXXXXXXXXXXXXXXXXHLARDCXXXXXXXXXSCFNCGKPGHF 249
C+ CG +GH+ +DC H+A +C +C+ CG+ GH
Sbjct: 121 CYSCGEFGHIQKDC--------TKVKCYRCGETGHVAINCSKTSEV---NCYRCGESGHL 169
Query: 250 ARECT 254
ARECT
Sbjct: 170 ARECT 174
Score = 94 (38.1 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 21/68 (30%), Positives = 28/68 (41%)
Query: 190 CFKCGGYGHLARDCITXXXXXXXXXXXXXXXXXXHLARDCXXXXXXXXXSCFNCGKPGHF 249
C+ CG GHLARDC H+ +DC C+ CG+ GH
Sbjct: 100 CYNCGKPGHLARDC-----DHADEQKCYSCGEFGHIQKDCTKV------KCYRCGETGHV 148
Query: 250 ARECTKVA 257
A C+K +
Sbjct: 149 AINCSKTS 156
Score = 36 (17.7 bits), Expect = 3.1e-11, Sum P(2) = 3.1e-11
Identities = 5/7 (71%), Positives = 7/7 (100%)
Query: 168 HFARDCP 174
H+AR+CP
Sbjct: 14 HWARECP 20
Score = 34 (17.0 bits), Expect = 4.9e-11, Sum P(2) = 4.9e-11
Identities = 6/7 (85%), Positives = 6/7 (85%)
Query: 138 GHVAREC 144
GH AREC
Sbjct: 13 GHWAREC 19
>UNIPROTKB|F8WFK2 [details] [associations]
symbol:Cnbp "Cellular nucleic acid-binding protein"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005783 "endoplasmic reticulum" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
InterPro:IPR001878 Pfam:PF00098 PROSITE:PS50158 SMART:SM00343
RGD:621807 GO:GO:0046872 GO:GO:0008270 GO:GO:0003676
Gene3D:4.10.60.10 SUPFAM:SSF57756 GeneTree:ENSGT00510000047065
IPI:IPI00201505 ProteinModelPortal:F8WFK2 SMR:F8WFK2
Ensembl:ENSRNOT00000013884 Uniprot:F8WFK2
Length = 179
Score = 131 (51.2 bits), Expect = 3.1e-11, Sum P(2) = 3.1e-11
Identities = 24/64 (37%), Positives = 31/64 (48%)
Query: 190 CFKCGGYGHLARDCITXXXXXXXXXXXXXXXXXXHLARDCXXXXXXXXXSCFNCGKPGHF 249
C++CG GHLA+DC H+A+DC C+NCGKPGH
Sbjct: 54 CYRCGESGHLAKDC----DLQEDVEACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHL 109
Query: 250 AREC 253
AR+C
Sbjct: 110 ARDC 113
Score = 115 (45.5 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
Identities = 28/89 (31%), Positives = 38/89 (42%)
Query: 168 HFARDCPRQQXXXXXXXXXXXXCFKCGGYGHLARDCITXXXXXXXXXXXXXXXXXXHLAR 227
H A+DC Q+ C+ CG GH+A+DC HLAR
Sbjct: 62 HLAKDCDLQEDVEA--------CYNCGRGGHIAKDC--KEPKREREQCCYNCGKPGHLAR 111
Query: 228 DCXXXXXXXXXSCFNCGKPGHFARECTKV 256
DC C++CG+ GH ++CTKV
Sbjct: 112 DCDHADEQ---KCYSCGEFGHIQKDCTKV 137
Score = 99 (39.9 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 20/65 (30%), Positives = 29/65 (44%)
Query: 190 CFKCGGYGHLARDCITXXXXXXXXXXXXXXXXXXHLARDCXXXXXXXXXSCFNCGKPGHF 249
C+ CG +GH+ +DC H+A +C +C+ CG+ GH
Sbjct: 121 CYSCGEFGHIQKDC--------TKVKCYRCGETGHVAINCSKTSEV---NCYRCGESGHL 169
Query: 250 ARECT 254
ARECT
Sbjct: 170 ARECT 174
Score = 94 (38.1 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 21/68 (30%), Positives = 28/68 (41%)
Query: 190 CFKCGGYGHLARDCITXXXXXXXXXXXXXXXXXXHLARDCXXXXXXXXXSCFNCGKPGHF 249
C+ CG GHLARDC H+ +DC C+ CG+ GH
Sbjct: 100 CYNCGKPGHLARDC-----DHADEQKCYSCGEFGHIQKDCTKV------KCYRCGETGHV 148
Query: 250 ARECTKVA 257
A C+K +
Sbjct: 149 AINCSKTS 156
Score = 36 (17.7 bits), Expect = 3.1e-11, Sum P(2) = 3.1e-11
Identities = 5/7 (71%), Positives = 7/7 (100%)
Query: 168 HFARDCP 174
H+AR+CP
Sbjct: 14 HWARECP 20
Score = 34 (17.0 bits), Expect = 4.9e-11, Sum P(2) = 4.9e-11
Identities = 6/7 (85%), Positives = 6/7 (85%)
Query: 138 GHVAREC 144
GH AREC
Sbjct: 13 GHWAREC 19
>UNIPROTKB|F1LY12 [details] [associations]
symbol:F1LY12 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313
PRINTS:PR00050 SMART:SM00357 Prosite:PS00352 GO:GO:0006355
GO:GO:0003677 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 IPI:IPI00780136 Ensembl:ENSRNOT00000030974
ArrayExpress:F1LY12 Uniprot:F1LY12
Length = 292
Score = 158 (60.7 bits), Expect = 3.1e-11, P = 3.1e-11
Identities = 35/82 (42%), Positives = 51/82 (62%)
Query: 5 TRSTGKVTWFDGAKGYGFIRPDDGGADLFVHQKSIKSDG---Y-RTLYENQSVEFDVQLE 60
T+ G V WF+ GYGFI +D D+FVHQ +IK + Y R++ + ++VE+DV +E
Sbjct: 25 TKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEYDV-VE 83
Query: 61 ADGKYQALDVTAPGGAPVHSSK 82
+ +A +VT PGG PV SK
Sbjct: 84 GEKGAEAANVTGPGGVPVQGSK 105
>UNIPROTKB|J9NTJ7 [details] [associations]
symbol:LOC474472 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313
PRINTS:PR00050 SMART:SM00357 Prosite:PS00352 GO:GO:0006355
GO:GO:0003677 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 GeneTree:ENSGT00390000009256 EMBL:AAEX03026560
Ensembl:ENSCAFT00000027380 OMA:ARKEDTH Uniprot:J9NTJ7
Length = 322
Score = 159 (61.0 bits), Expect = 3.3e-11, P = 3.3e-11
Identities = 36/82 (43%), Positives = 51/82 (62%)
Query: 5 TRSTGKVTWFDGAKGYGFIRPDDGGADLFVHQKSIKSDG---Y-RTLYENQSVEFDVQLE 60
T+ G V WF+ GYGFI +D D+FVHQ +IK + Y R++ + ++VEFDV +E
Sbjct: 55 TKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNHPRKYLRSVGDGETVEFDV-VE 113
Query: 61 ADGKYQALDVTAPGGAPVHSSK 82
+ +A +VT PGG PV SK
Sbjct: 114 GEKGAEAANVTGPGGVPVQGSK 135
>UNIPROTKB|J9P9A0 [details] [associations]
symbol:J9P9A0 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313
PRINTS:PR00050 SMART:SM00357 Prosite:PS00352 GO:GO:0006355
GO:GO:0003677 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 GeneTree:ENSGT00390000009256 EMBL:AAEX03001199
OMA:QPREDSK Ensembl:ENSCAFT00000048533 Uniprot:J9P9A0
Length = 257
Score = 155 (59.6 bits), Expect = 3.8e-11, P = 3.8e-11
Identities = 34/82 (41%), Positives = 50/82 (60%)
Query: 5 TRSTGKVTWFDGAKGYGFIRPDDGGADLFVHQKSIKSDG---Y-RTLYENQSVEFDVQLE 60
T+ G V WF+ GYGF+ +D D+F HQ +IK + Y R++ + ++VEFDV +E
Sbjct: 46 TKVLGTVKWFNVRNGYGFLNRNDSKEDVFAHQTAIKKNHPRKYLRSVGDGETVEFDV-VE 104
Query: 61 ADGKYQALDVTAPGGAPVHSSK 82
+ +A +VT PGG PV SK
Sbjct: 105 GEKGAEAANVTGPGGVPVQGSK 126
>MGI|MGI:88431 [details] [associations]
symbol:Cnbp "cellular nucleic acid binding protein"
species:10090 "Mus musculus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003697
"single-stranded DNA binding" evidence=ISO] [GO:0003727
"single-stranded RNA binding" evidence=ISO] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005783
"endoplasmic reticulum" evidence=IDA] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IDA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IDA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IDA] [GO:0046872 "metal ion binding" evidence=IEA]
InterPro:IPR001878 Pfam:PF00098 PROSITE:PS50158 SMART:SM00343
MGI:MGI:88431 GO:GO:0005783 GO:GO:0005829 GO:GO:0005634
GO:GO:0046872 GO:GO:0008284 GO:GO:0008270 GO:GO:0003727
GO:GO:0045944 GO:GO:0006351 GO:GO:0003697 eggNOG:COG5082
Gene3D:4.10.60.10 SUPFAM:SSF57756 HOGENOM:HOG000186262 KO:K09250
CTD:7555 HOVERGEN:HBG000397 ChiTaRS:CNBP EMBL:L12693 EMBL:Z11870
EMBL:X63866 EMBL:Z11871 EMBL:U20326 EMBL:AY176064 EMBL:AK075760
EMBL:AK078427 EMBL:BC058723 IPI:IPI00137229 IPI:IPI00330767
IPI:IPI00454151 PIR:I48297 PIR:I48298 PIR:I49259
RefSeq:NP_001103215.1 RefSeq:NP_038521.1 UniGene:Mm.290251
ProteinModelPortal:P53996 SMR:P53996 IntAct:P53996 STRING:P53996
PhosphoSite:P53996 PaxDb:P53996 PRIDE:P53996
Ensembl:ENSMUST00000032138 Ensembl:ENSMUST00000113619 GeneID:12785
KEGG:mmu:12785 InParanoid:P53996 OMA:CPNGQGG NextBio:282182
Bgee:P53996 CleanEx:MM_CNBP Genevestigator:P53996
GermOnline:ENSMUSG00000030057 Uniprot:P53996
Length = 178
Score = 130 (50.8 bits), Expect = 3.9e-11, Sum P(2) = 3.9e-11
Identities = 24/64 (37%), Positives = 31/64 (48%)
Query: 190 CFKCGGYGHLARDCITXXXXXXXXXXXXXXXXXXHLARDCXXXXXXXXXSCFNCGKPGHF 249
C++CG GHLA+DC H+A+DC C+NCGKPGH
Sbjct: 54 CYRCGESGHLAKDC-----DLQEDEACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHL 108
Query: 250 AREC 253
AR+C
Sbjct: 109 ARDC 112
Score = 114 (45.2 bits), Expect = 1.8e-09, Sum P(2) = 1.8e-09
Identities = 28/89 (31%), Positives = 38/89 (42%)
Query: 168 HFARDCPRQQXXXXXXXXXXXXCFKCGGYGHLARDCITXXXXXXXXXXXXXXXXXXHLAR 227
H A+DC Q+ C+ CG GH+A+DC HLAR
Sbjct: 62 HLAKDCDLQEDEA---------CYNCGRGGHIAKDC--KEPKREREQCCYNCGKPGHLAR 110
Query: 228 DCXXXXXXXXXSCFNCGKPGHFARECTKV 256
DC C++CG+ GH ++CTKV
Sbjct: 111 DCDHADEQ---KCYSCGEFGHIQKDCTKV 136
Score = 99 (39.9 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 20/65 (30%), Positives = 29/65 (44%)
Query: 190 CFKCGGYGHLARDCITXXXXXXXXXXXXXXXXXXHLARDCXXXXXXXXXSCFNCGKPGHF 249
C+ CG +GH+ +DC H+A +C +C+ CG+ GH
Sbjct: 120 CYSCGEFGHIQKDC--------TKVKCYRCGETGHVAINCSKTSEV---NCYRCGESGHL 168
Query: 250 ARECT 254
ARECT
Sbjct: 169 ARECT 173
Score = 94 (38.1 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 21/68 (30%), Positives = 28/68 (41%)
Query: 190 CFKCGGYGHLARDCITXXXXXXXXXXXXXXXXXXHLARDCXXXXXXXXXSCFNCGKPGHF 249
C+ CG GHLARDC H+ +DC C+ CG+ GH
Sbjct: 99 CYNCGKPGHLARDC-----DHADEQKCYSCGEFGHIQKDCTKV------KCYRCGETGHV 147
Query: 250 ARECTKVA 257
A C+K +
Sbjct: 148 AINCSKTS 155
Score = 36 (17.7 bits), Expect = 3.9e-11, Sum P(2) = 3.9e-11
Identities = 5/7 (71%), Positives = 7/7 (100%)
Query: 168 HFARDCP 174
H+AR+CP
Sbjct: 14 HWARECP 20
Score = 34 (17.0 bits), Expect = 6.3e-11, Sum P(2) = 6.3e-11
Identities = 6/7 (85%), Positives = 6/7 (85%)
Query: 138 GHVAREC 144
GH AREC
Sbjct: 13 GHWAREC 19
>UNIPROTKB|E9PTV8 [details] [associations]
symbol:E9PTV8 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313
PRINTS:PR00050 SMART:SM00357 Prosite:PS00352 GO:GO:0006355
GO:GO:0003677 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 GeneTree:ENSGT00390000009256 IPI:IPI00551815
OMA:EGNESAP PRIDE:E9PTV8 Ensembl:ENSRNOT00000015875
ArrayExpress:E9PTV8 Uniprot:E9PTV8
Length = 326
Score = 158 (60.7 bits), Expect = 4.4e-11, P = 4.4e-11
Identities = 35/82 (42%), Positives = 51/82 (62%)
Query: 5 TRSTGKVTWFDGAKGYGFIRPDDGGADLFVHQKSIKSDG---Y-RTLYENQSVEFDVQLE 60
T+ G V WF+ GYGFI +D D+FVHQ +IK + Y R++ + ++VE+DV +E
Sbjct: 55 TKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEYDV-VE 113
Query: 61 ADGKYQALDVTAPGGAPVHSSK 82
+ +A +VT PGG PV SK
Sbjct: 114 GEKGAEAANVTGPGGVPVQGSK 135
>UNIPROTKB|P0A986 [details] [associations]
symbol:cspI species:83333 "Escherichia coli K-12"
[GO:0009409 "response to cold" evidence=IDA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR002059 InterPro:IPR011129 InterPro:IPR012156
Pfam:PF00313 PIRSF:PIRSF002599 PRINTS:PR00050 SMART:SM00357
Prosite:PS00352 GO:GO:0005737 GO:GO:0006355 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
GO:GO:0003677 GO:GO:0009409 GO:GO:0006351 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR019844
eggNOG:COG1278 HOGENOM:HOG000070674 KO:K03704 OMA:IQSNNFK
PIR:C64910 RefSeq:NP_416070.1 RefSeq:YP_489816.1
ProteinModelPortal:P0A986 SMR:P0A986 DIP:DIP-48195N IntAct:P0A986
MINT:MINT-1309031 PRIDE:P0A986 EnsemblBacteria:EBESCT00000000769
EnsemblBacteria:EBESCT00000016713 GeneID:12931246 GeneID:946099
KEGG:ecj:Y75_p1528 KEGG:eco:b1552 PATRIC:32118406 EchoBASE:EB3636
EcoGene:EG13877 ProtClustDB:CLSK891754 BioCyc:EcoCyc:G6825-MONOMER
BioCyc:ECOL316407:JW1544-MONOMER Genevestigator:P0A986
Uniprot:P0A986
Length = 70
Score = 153 (58.9 bits), Expect = 4.5e-11, P = 4.5e-11
Identities = 27/53 (50%), Positives = 38/53 (71%)
Query: 6 RSTGKVTWFDGAKGYGFIRPDDGGADLFVHQKSIKSDGYRTLYENQSVEFDVQ 58
+ TG V WF+ KG+GFI P DG D+FVH +I+S+ ++TL ENQ VEF ++
Sbjct: 4 KMTGLVKWFNPEKGFGFITPKDGSKDVFVHFSAIQSNDFKTLTENQEVEFGIE 56
>TIGR_CMR|BA_5115 [details] [associations]
symbol:BA_5115 "cold shock protein CspD" species:198094
"Bacillus anthracis str. Ames" [GO:0003677 "DNA binding"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0009409 "response to cold"
evidence=ISS] InterPro:IPR002059 InterPro:IPR011129
InterPro:IPR012156 Pfam:PF00313 PIRSF:PIRSF002599 PRINTS:PR00050
SMART:SM00357 Prosite:PS00352 GO:GO:0005737 GO:GO:0006355
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
GO:GO:0006351 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 eggNOG:COG1278 KO:K03704 RefSeq:NP_847301.1
RefSeq:YP_021768.1 RefSeq:YP_030998.1 ProteinModelPortal:Q81K90
SMR:Q81K90 DNASU:1084426 EnsemblBacteria:EBBACT00000008459
EnsemblBacteria:EBBACT00000015452 EnsemblBacteria:EBBACT00000020851
GeneID:1084426 GeneID:2816754 GeneID:2848947 KEGG:ban:BA_5115
KEGG:bar:GBAA_5115 KEGG:bat:BAS4754 HOGENOM:HOG000070673
OMA:IQSNNFK ProtClustDB:CLSK917532
BioCyc:BANT260799:GJAJ-4808-MONOMER
BioCyc:BANT261594:GJ7F-4967-MONOMER Uniprot:Q81K90
Length = 66
Score = 153 (58.9 bits), Expect = 4.5e-11, P = 4.5e-11
Identities = 31/64 (48%), Positives = 44/64 (68%)
Query: 8 TGKVTWFDGAKGYGFIRPDDGGADLFVHQKSIKSDGYRTLYENQSVEFDVQLEADGKYQA 67
TGKV WF+ KG+GFI + GG D+FVH +I+ DG++TL E Q V F++ +E + QA
Sbjct: 3 TGKVKWFNSEKGFGFIEVE-GGDDVFVHFSAIQGDGFKTLEEGQEVSFEI-VEGNRGPQA 60
Query: 68 LDVT 71
+VT
Sbjct: 61 ANVT 64
>TIGR_CMR|SPO_0437 [details] [associations]
symbol:SPO_0437 "cold shock family protein" species:246200
"Ruegeria pomeroyi DSS-3" [GO:0003677 "DNA binding" evidence=ISS]
[GO:0009409 "response to cold" evidence=ISS] InterPro:IPR002059
InterPro:IPR011129 InterPro:IPR012156 Pfam:PF00313
PIRSF:PIRSF002599 PRINTS:PR00050 SMART:SM00357 Prosite:PS00352
GO:GO:0005737 GO:GO:0006355 EMBL:CP000031 GenomeReviews:CP000031_GR
GO:GO:0003677 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 KO:K03704 HOGENOM:HOG000070673
RefSeq:YP_165700.1 ProteinModelPortal:Q5LWA5 SMR:Q5LWA5
GeneID:3192720 KEGG:sil:SPO0437 PATRIC:23374139 OMA:VEFAIHR
ProtClustDB:CLSK747481 Uniprot:Q5LWA5
Length = 68
Score = 153 (58.9 bits), Expect = 4.5e-11, P = 4.5e-11
Identities = 26/64 (40%), Positives = 43/64 (67%)
Query: 7 STGKVTWFDGAKGYGFIRPDDGGADLFVHQKSIKSDGYRTLYENQSVEFDVQLEADGKYQ 66
+TG V WF+ KG+GFI P++GG D+FVH +++ G L +NQ V ++++ DG+
Sbjct: 2 ATGTVKWFNTTKGFGFIAPEEGGKDVFVHISAVERSGLTGLADNQKVSYELKPGRDGRES 61
Query: 67 ALDV 70
A+D+
Sbjct: 62 AVDL 65
>UNIPROTKB|P62633 [details] [associations]
symbol:CNBP "Cellular nucleic acid-binding protein"
species:9606 "Homo sapiens" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0008284 "positive regulation of cell proliferation"
evidence=ISS] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0005783 "endoplasmic reticulum"
evidence=ISS] [GO:0005829 "cytosol" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0006695 "cholesterol biosynthetic process" evidence=TAS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=TAS] InterPro:IPR001878 Pfam:PF00098
PROSITE:PS50158 SMART:SM00343 GO:GO:0005783 GO:GO:0005829
GO:GO:0005634 GO:GO:0046872 GO:GO:0003677 GO:GO:0008284
EMBL:CH471052 GO:GO:0008270 GO:GO:0045944 GO:GO:0003700
GO:GO:0006351 GO:GO:0006695 eggNOG:COG5082 Gene3D:4.10.60.10
SUPFAM:SSF57756 HOGENOM:HOG000186262 KO:K09250 CTD:7555
HOVERGEN:HBG000397 OrthoDB:EOG45HRZN EMBL:M28372 EMBL:U19765
EMBL:AY329622 EMBL:AK054592 EMBL:DQ092367 EMBL:DQ091187
EMBL:AK314380 EMBL:BT019613 EMBL:AC108673 EMBL:AC135587
EMBL:BC000288 EMBL:BC014911 EMBL:BC093058 IPI:IPI00430812
IPI:IPI00430813 IPI:IPI00430814 IPI:IPI00895911 IPI:IPI00967344
PIR:A32760 RefSeq:NP_001120665.1 RefSeq:NP_001120666.1
RefSeq:NP_001120668.1 RefSeq:NP_003409.1 UniGene:Hs.518249
ProteinModelPortal:P62633 SMR:P62633 IntAct:P62633 STRING:P62633
PhosphoSite:P62633 DMDM:50401852 PaxDb:P62633 PRIDE:P62633
DNASU:7555 Ensembl:ENST00000422453 Ensembl:ENST00000446936
Ensembl:ENST00000451728 Ensembl:ENST00000502976
Ensembl:ENST00000504813 GeneID:7555 KEGG:hsa:7555 UCSC:uc003elq.4
UCSC:uc003elr.4 GeneCards:GC03M128886 HGNC:HGNC:13164 MIM:116955
MIM:602668 neXtProt:NX_P62633 Orphanet:606 PharmGKB:PA37737
InParanoid:P62633 PhylomeDB:P62633 ChiTaRS:CNBP GenomeRNAi:7555
NextBio:29559 ArrayExpress:P62633 Bgee:P62633 CleanEx:HS_CNBP
Genevestigator:P62633 GermOnline:ENSG00000169714 Uniprot:P62633
Length = 177
Score = 129 (50.5 bits), Expect = 4.9e-11, Sum P(2) = 4.9e-11
Identities = 24/64 (37%), Positives = 31/64 (48%)
Query: 190 CFKCGGYGHLARDCITXXXXXXXXXXXXXXXXXXHLARDCXXXXXXXXXSCFNCGKPGHF 249
C++CG GHLA+DC H+A+DC C+NCGKPGH
Sbjct: 54 CYRCGESGHLAKDC------DLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHL 107
Query: 250 AREC 253
AR+C
Sbjct: 108 ARDC 111
Score = 113 (44.8 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
Identities = 28/89 (31%), Positives = 38/89 (42%)
Query: 168 HFARDCPRQQXXXXXXXXXXXXCFKCGGYGHLARDCITXXXXXXXXXXXXXXXXXXHLAR 227
H A+DC Q+ C+ CG GH+A+DC HLAR
Sbjct: 62 HLAKDCDLQEDA----------CYNCGRGGHIAKDC--KEPKREREQCCYNCGKPGHLAR 109
Query: 228 DCXXXXXXXXXSCFNCGKPGHFARECTKV 256
DC C++CG+ GH ++CTKV
Sbjct: 110 DCDHADEQ---KCYSCGEFGHIQKDCTKV 135
Score = 99 (39.9 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 20/65 (30%), Positives = 29/65 (44%)
Query: 190 CFKCGGYGHLARDCITXXXXXXXXXXXXXXXXXXHLARDCXXXXXXXXXSCFNCGKPGHF 249
C+ CG +GH+ +DC H+A +C +C+ CG+ GH
Sbjct: 119 CYSCGEFGHIQKDC--------TKVKCYRCGETGHVAINCSKTSEV---NCYRCGESGHL 167
Query: 250 ARECT 254
ARECT
Sbjct: 168 ARECT 172
Score = 94 (38.1 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 21/68 (30%), Positives = 28/68 (41%)
Query: 190 CFKCGGYGHLARDCITXXXXXXXXXXXXXXXXXXHLARDCXXXXXXXXXSCFNCGKPGHF 249
C+ CG GHLARDC H+ +DC C+ CG+ GH
Sbjct: 98 CYNCGKPGHLARDC-----DHADEQKCYSCGEFGHIQKDCTKV------KCYRCGETGHV 146
Query: 250 ARECTKVA 257
A C+K +
Sbjct: 147 AINCSKTS 154
Score = 36 (17.7 bits), Expect = 4.9e-11, Sum P(2) = 4.9e-11
Identities = 5/7 (71%), Positives = 7/7 (100%)
Query: 168 HFARDCP 174
H+AR+CP
Sbjct: 14 HWARECP 20
Score = 34 (17.0 bits), Expect = 8.0e-11, Sum P(2) = 8.0e-11
Identities = 6/7 (85%), Positives = 6/7 (85%)
Query: 138 GHVAREC 144
GH AREC
Sbjct: 13 GHWAREC 19
>UNIPROTKB|Q4R501 [details] [associations]
symbol:Q4R501 "Brain cDNA, clone: QnpA-14556, similar to
human zinc finger protein 9 (a cellular retroviral nucleicacid
binding protein) (ZNF9)," species:9541 "Macaca fascicularis"
[GO:0005634 "nucleus" evidence=ISS] [GO:0005783 "endoplasmic
reticulum" evidence=ISS] [GO:0005829 "cytosol" evidence=ISS]
[GO:0008284 "positive regulation of cell proliferation"
evidence=ISS] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
InterPro:IPR001878 Pfam:PF00098 PROSITE:PS50158 SMART:SM00343
GO:GO:0005783 GO:GO:0005829 GO:GO:0005634 GO:GO:0046872
GO:GO:0008284 GO:GO:0008270 GO:GO:0045944 GO:GO:0003676
Gene3D:4.10.60.10 SUPFAM:SSF57756 HOVERGEN:HBG000397 EMBL:AB169743
EMBL:AB174174 ProteinModelPortal:Q4R501 SMR:Q4R501 PRIDE:Q4R501
Uniprot:Q4R501
Length = 177
Score = 129 (50.5 bits), Expect = 4.9e-11, Sum P(2) = 4.9e-11
Identities = 24/64 (37%), Positives = 31/64 (48%)
Query: 190 CFKCGGYGHLARDCITXXXXXXXXXXXXXXXXXXHLARDCXXXXXXXXXSCFNCGKPGHF 249
C++CG GHLA+DC H+A+DC C+NCGKPGH
Sbjct: 54 CYRCGESGHLAKDC------DLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHL 107
Query: 250 AREC 253
AR+C
Sbjct: 108 ARDC 111
Score = 113 (44.8 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
Identities = 28/89 (31%), Positives = 38/89 (42%)
Query: 168 HFARDCPRQQXXXXXXXXXXXXCFKCGGYGHLARDCITXXXXXXXXXXXXXXXXXXHLAR 227
H A+DC Q+ C+ CG GH+A+DC HLAR
Sbjct: 62 HLAKDCDLQEDA----------CYNCGRGGHIAKDC--KEPKREREQCCYNCGKPGHLAR 109
Query: 228 DCXXXXXXXXXSCFNCGKPGHFARECTKV 256
DC C++CG+ GH ++CTKV
Sbjct: 110 DCDHADEQ---KCYSCGEFGHIQKDCTKV 135
Score = 99 (39.9 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 20/65 (30%), Positives = 29/65 (44%)
Query: 190 CFKCGGYGHLARDCITXXXXXXXXXXXXXXXXXXHLARDCXXXXXXXXXSCFNCGKPGHF 249
C+ CG +GH+ +DC H+A +C +C+ CG+ GH
Sbjct: 119 CYSCGEFGHIQKDC--------TKVKCYRCGETGHVAINCSKTSEV---NCYRCGESGHL 167
Query: 250 ARECT 254
ARECT
Sbjct: 168 ARECT 172
Score = 94 (38.1 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 21/68 (30%), Positives = 28/68 (41%)
Query: 190 CFKCGGYGHLARDCITXXXXXXXXXXXXXXXXXXHLARDCXXXXXXXXXSCFNCGKPGHF 249
C+ CG GHLARDC H+ +DC C+ CG+ GH
Sbjct: 98 CYNCGKPGHLARDC-----DHADEQKCYSCGEFGHIQKDCTKV------KCYRCGETGHV 146
Query: 250 ARECTKVA 257
A C+K +
Sbjct: 147 AINCSKTS 154
Score = 36 (17.7 bits), Expect = 4.9e-11, Sum P(2) = 4.9e-11
Identities = 5/7 (71%), Positives = 7/7 (100%)
Query: 168 HFARDCP 174
H+AR+CP
Sbjct: 14 HWARECP 20
Score = 34 (17.0 bits), Expect = 8.0e-11, Sum P(2) = 8.0e-11
Identities = 6/7 (85%), Positives = 6/7 (85%)
Query: 138 GHVAREC 144
GH AREC
Sbjct: 13 GHWAREC 19
>UNIPROTKB|Q5R5R5 [details] [associations]
symbol:CNBP "Cellular nucleic acid-binding protein"
species:9601 "Pongo abelii" [GO:0005634 "nucleus" evidence=ISS]
[GO:0005783 "endoplasmic reticulum" evidence=ISS] [GO:0005829
"cytosol" evidence=ISS] [GO:0008284 "positive regulation of cell
proliferation" evidence=ISS] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISS] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=ISS] InterPro:IPR001878 Pfam:PF00098 PROSITE:PS50158
SMART:SM00343 GO:GO:0005783 GO:GO:0005829 GO:GO:0005634
GO:GO:0046872 GO:GO:0003677 GO:GO:0008284 GO:GO:0008270
GO:GO:0045944 GO:GO:0006351 Gene3D:4.10.60.10 SUPFAM:SSF57756
KO:K09250 CTD:7555 GeneTree:ENSGT00510000047065 HOVERGEN:HBG000397
OMA:CPNGQGG EMBL:CR860791 RefSeq:NP_001126703.1 UniGene:Pab.18652
ProteinModelPortal:Q5R5R5 SMR:Q5R5R5 PRIDE:Q5R5R5
Ensembl:ENSPPYT00000015613 GeneID:100173703 KEGG:pon:100173703
InParanoid:Q5R5R5 Uniprot:Q5R5R5
Length = 177
Score = 129 (50.5 bits), Expect = 4.9e-11, Sum P(2) = 4.9e-11
Identities = 24/64 (37%), Positives = 31/64 (48%)
Query: 190 CFKCGGYGHLARDCITXXXXXXXXXXXXXXXXXXHLARDCXXXXXXXXXSCFNCGKPGHF 249
C++CG GHLA+DC H+A+DC C+NCGKPGH
Sbjct: 54 CYRCGESGHLAKDC------DLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHL 107
Query: 250 AREC 253
AR+C
Sbjct: 108 ARDC 111
Score = 113 (44.8 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
Identities = 28/89 (31%), Positives = 38/89 (42%)
Query: 168 HFARDCPRQQXXXXXXXXXXXXCFKCGGYGHLARDCITXXXXXXXXXXXXXXXXXXHLAR 227
H A+DC Q+ C+ CG GH+A+DC HLAR
Sbjct: 62 HLAKDCDLQEDA----------CYNCGRGGHIAKDC--KEPKREREQCCYNCGKPGHLAR 109
Query: 228 DCXXXXXXXXXSCFNCGKPGHFARECTKV 256
DC C++CG+ GH ++CTKV
Sbjct: 110 DCDHADEQ---KCYSCGEFGHIQKDCTKV 135
Score = 99 (39.9 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 20/65 (30%), Positives = 29/65 (44%)
Query: 190 CFKCGGYGHLARDCITXXXXXXXXXXXXXXXXXXHLARDCXXXXXXXXXSCFNCGKPGHF 249
C+ CG +GH+ +DC H+A +C +C+ CG+ GH
Sbjct: 119 CYSCGEFGHIQKDC--------TKVKCYRCGETGHVAINCSKTSEV---NCYRCGESGHL 167
Query: 250 ARECT 254
ARECT
Sbjct: 168 ARECT 172
Score = 94 (38.1 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 21/68 (30%), Positives = 28/68 (41%)
Query: 190 CFKCGGYGHLARDCITXXXXXXXXXXXXXXXXXXHLARDCXXXXXXXXXSCFNCGKPGHF 249
C+ CG GHLARDC H+ +DC C+ CG+ GH
Sbjct: 98 CYNCGKPGHLARDC-----DHADEQKCYSCGEFGHIQKDCTKV------KCYRCGETGHV 146
Query: 250 ARECTKVA 257
A C+K +
Sbjct: 147 AINCSKTS 154
Score = 36 (17.7 bits), Expect = 4.9e-11, Sum P(2) = 4.9e-11
Identities = 5/7 (71%), Positives = 7/7 (100%)
Query: 168 HFARDCP 174
H+AR+CP
Sbjct: 14 HWARECP 20
Score = 34 (17.0 bits), Expect = 8.0e-11, Sum P(2) = 8.0e-11
Identities = 6/7 (85%), Positives = 6/7 (85%)
Query: 138 GHVAREC 144
GH AREC
Sbjct: 13 GHWAREC 19
>RGD|621807 [details] [associations]
symbol:Cnbp "CCHC-type zinc finger, nucleic acid binding protein"
species:10116 "Rattus norvegicus" [GO:0003697 "single-stranded DNA
binding" evidence=IDA] [GO:0003727 "single-stranded RNA binding"
evidence=IDA] [GO:0005634 "nucleus" evidence=ISO;ISS] [GO:0005783
"endoplasmic reticulum" evidence=ISO;ISS] [GO:0005829 "cytosol"
evidence=ISO;ISS] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0008284 "positive regulation of cell proliferation"
evidence=ISO;ISS] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISO;ISS] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=ISO;ISS] InterPro:IPR001878 Pfam:PF00098
PROSITE:PS50158 SMART:SM00343 RGD:621807 GO:GO:0005783
GO:GO:0005829 GO:GO:0005634 GO:GO:0046872 GO:GO:0008284
GO:GO:0008270 GO:GO:0003727 GO:GO:0045944 GO:GO:0006351
GO:GO:0003697 eggNOG:COG5082 Gene3D:4.10.60.10 SUPFAM:SSF57756
HOGENOM:HOG000186262 KO:K09250 CTD:7555 HOVERGEN:HBG000397
OrthoDB:EOG45HRZN EMBL:D45254 EMBL:AF242550 EMBL:AY329624
EMBL:AB158421 EMBL:AB158422 EMBL:BC062225 IPI:IPI00201505
PIR:JC2512 RefSeq:NP_072120.1 UniGene:Rn.6187
ProteinModelPortal:P62634 SMR:P62634 STRING:P62634
PhosphoSite:P62634 PRIDE:P62634 GeneID:64530 KEGG:rno:64530
InParanoid:P62634 NextBio:613366 ArrayExpress:P62634
Genevestigator:P62634 GermOnline:ENSRNOG00000010239 Uniprot:P62634
Length = 177
Score = 129 (50.5 bits), Expect = 4.9e-11, Sum P(2) = 4.9e-11
Identities = 24/64 (37%), Positives = 31/64 (48%)
Query: 190 CFKCGGYGHLARDCITXXXXXXXXXXXXXXXXXXHLARDCXXXXXXXXXSCFNCGKPGHF 249
C++CG GHLA+DC H+A+DC C+NCGKPGH
Sbjct: 54 CYRCGESGHLAKDC------DLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHL 107
Query: 250 AREC 253
AR+C
Sbjct: 108 ARDC 111
Score = 113 (44.8 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
Identities = 28/89 (31%), Positives = 38/89 (42%)
Query: 168 HFARDCPRQQXXXXXXXXXXXXCFKCGGYGHLARDCITXXXXXXXXXXXXXXXXXXHLAR 227
H A+DC Q+ C+ CG GH+A+DC HLAR
Sbjct: 62 HLAKDCDLQEDA----------CYNCGRGGHIAKDC--KEPKREREQCCYNCGKPGHLAR 109
Query: 228 DCXXXXXXXXXSCFNCGKPGHFARECTKV 256
DC C++CG+ GH ++CTKV
Sbjct: 110 DCDHADEQ---KCYSCGEFGHIQKDCTKV 135
Score = 99 (39.9 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 20/65 (30%), Positives = 29/65 (44%)
Query: 190 CFKCGGYGHLARDCITXXXXXXXXXXXXXXXXXXHLARDCXXXXXXXXXSCFNCGKPGHF 249
C+ CG +GH+ +DC H+A +C +C+ CG+ GH
Sbjct: 119 CYSCGEFGHIQKDC--------TKVKCYRCGETGHVAINCSKTSEV---NCYRCGESGHL 167
Query: 250 ARECT 254
ARECT
Sbjct: 168 ARECT 172
Score = 94 (38.1 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 21/68 (30%), Positives = 28/68 (41%)
Query: 190 CFKCGGYGHLARDCITXXXXXXXXXXXXXXXXXXHLARDCXXXXXXXXXSCFNCGKPGHF 249
C+ CG GHLARDC H+ +DC C+ CG+ GH
Sbjct: 98 CYNCGKPGHLARDC-----DHADEQKCYSCGEFGHIQKDCTKV------KCYRCGETGHV 146
Query: 250 ARECTKVA 257
A C+K +
Sbjct: 147 AINCSKTS 154
Score = 36 (17.7 bits), Expect = 4.9e-11, Sum P(2) = 4.9e-11
Identities = 5/7 (71%), Positives = 7/7 (100%)
Query: 168 HFARDCP 174
H+AR+CP
Sbjct: 14 HWARECP 20
Score = 34 (17.0 bits), Expect = 8.0e-11, Sum P(2) = 8.0e-11
Identities = 6/7 (85%), Positives = 6/7 (85%)
Query: 138 GHVAREC 144
GH AREC
Sbjct: 13 GHWAREC 19
>UNIPROTKB|P62634 [details] [associations]
symbol:Cnbp "Cellular nucleic acid-binding protein"
species:10116 "Rattus norvegicus" [GO:0005634 "nucleus"
evidence=ISS] InterPro:IPR001878 Pfam:PF00098 PROSITE:PS50158
SMART:SM00343 RGD:621807 GO:GO:0005783 GO:GO:0005829 GO:GO:0005634
GO:GO:0046872 GO:GO:0008284 GO:GO:0008270 GO:GO:0003727
GO:GO:0045944 GO:GO:0006351 GO:GO:0003697 eggNOG:COG5082
Gene3D:4.10.60.10 SUPFAM:SSF57756 HOGENOM:HOG000186262 KO:K09250
CTD:7555 HOVERGEN:HBG000397 OrthoDB:EOG45HRZN EMBL:D45254
EMBL:AF242550 EMBL:AY329624 EMBL:AB158421 EMBL:AB158422
EMBL:BC062225 IPI:IPI00201505 PIR:JC2512 RefSeq:NP_072120.1
UniGene:Rn.6187 ProteinModelPortal:P62634 SMR:P62634 STRING:P62634
PhosphoSite:P62634 PRIDE:P62634 GeneID:64530 KEGG:rno:64530
InParanoid:P62634 NextBio:613366 ArrayExpress:P62634
Genevestigator:P62634 GermOnline:ENSRNOG00000010239 Uniprot:P62634
Length = 177
Score = 129 (50.5 bits), Expect = 4.9e-11, Sum P(2) = 4.9e-11
Identities = 24/64 (37%), Positives = 31/64 (48%)
Query: 190 CFKCGGYGHLARDCITXXXXXXXXXXXXXXXXXXHLARDCXXXXXXXXXSCFNCGKPGHF 249
C++CG GHLA+DC H+A+DC C+NCGKPGH
Sbjct: 54 CYRCGESGHLAKDC------DLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHL 107
Query: 250 AREC 253
AR+C
Sbjct: 108 ARDC 111
Score = 113 (44.8 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
Identities = 28/89 (31%), Positives = 38/89 (42%)
Query: 168 HFARDCPRQQXXXXXXXXXXXXCFKCGGYGHLARDCITXXXXXXXXXXXXXXXXXXHLAR 227
H A+DC Q+ C+ CG GH+A+DC HLAR
Sbjct: 62 HLAKDCDLQEDA----------CYNCGRGGHIAKDC--KEPKREREQCCYNCGKPGHLAR 109
Query: 228 DCXXXXXXXXXSCFNCGKPGHFARECTKV 256
DC C++CG+ GH ++CTKV
Sbjct: 110 DCDHADEQ---KCYSCGEFGHIQKDCTKV 135
Score = 99 (39.9 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 20/65 (30%), Positives = 29/65 (44%)
Query: 190 CFKCGGYGHLARDCITXXXXXXXXXXXXXXXXXXHLARDCXXXXXXXXXSCFNCGKPGHF 249
C+ CG +GH+ +DC H+A +C +C+ CG+ GH
Sbjct: 119 CYSCGEFGHIQKDC--------TKVKCYRCGETGHVAINCSKTSEV---NCYRCGESGHL 167
Query: 250 ARECT 254
ARECT
Sbjct: 168 ARECT 172
Score = 94 (38.1 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 21/68 (30%), Positives = 28/68 (41%)
Query: 190 CFKCGGYGHLARDCITXXXXXXXXXXXXXXXXXXHLARDCXXXXXXXXXSCFNCGKPGHF 249
C+ CG GHLARDC H+ +DC C+ CG+ GH
Sbjct: 98 CYNCGKPGHLARDC-----DHADEQKCYSCGEFGHIQKDCTKV------KCYRCGETGHV 146
Query: 250 ARECTKVA 257
A C+K +
Sbjct: 147 AINCSKTS 154
Score = 36 (17.7 bits), Expect = 4.9e-11, Sum P(2) = 4.9e-11
Identities = 5/7 (71%), Positives = 7/7 (100%)
Query: 168 HFARDCP 174
H+AR+CP
Sbjct: 14 HWARECP 20
Score = 34 (17.0 bits), Expect = 8.0e-11, Sum P(2) = 8.0e-11
Identities = 6/7 (85%), Positives = 6/7 (85%)
Query: 138 GHVAREC 144
GH AREC
Sbjct: 13 GHWAREC 19
>UNIPROTKB|P45441 [details] [associations]
symbol:ybx2-b "Y-box-binding protein 2-B" species:8355
"Xenopus laevis" [GO:0030529 "ribonucleoprotein complex"
evidence=IPI] InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313
PRINTS:PR00050 SMART:SM00357 Prosite:PS00352 GO:GO:0005737
GO:GO:0006417 GO:GO:0006355 GO:GO:0003677 GO:GO:0006351
GO:GO:0003723 GO:GO:0030529 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 InterPro:IPR019844 HOVERGEN:HBG079361 EMBL:M80257
EMBL:BC155913 PIR:A41786 RefSeq:NP_001081167.1 UniGene:Xl.7706
ProteinModelPortal:P45441 SMR:P45441 PRIDE:P45441 GeneID:394429
KEGG:xla:394429 CTD:394429 Xenbase:XB-GENE-6254213 Uniprot:P45441
Length = 324
Score = 157 (60.3 bits), Expect = 5.7e-11, P = 5.7e-11
Identities = 34/82 (41%), Positives = 50/82 (60%)
Query: 5 TRSTGKVTWFDGAKGYGFIRPDDGGADLFVHQKSIKSDG----YRTLYENQSVEFDVQLE 60
T+ G V WF+ GYGFI +D D+FVHQ +IK + R++ + ++VEFDV +E
Sbjct: 40 TQVQGTVKWFNVRNGYGFINRNDSKEDVFVHQTAIKKNNPRKFLRSVGDGETVEFDV-VE 98
Query: 61 ADGKYQALDVTAPGGAPVHSSK 82
+ +A +VT PGG PV S+
Sbjct: 99 GEKGAEAANVTGPGGVPVKGSR 120
>UNIPROTKB|O42395 [details] [associations]
symbol:CNBP "Cellular nucleic acid-binding protein"
species:9031 "Gallus gallus" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0005783
"endoplasmic reticulum" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0008284
"positive regulation of cell proliferation" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] InterPro:IPR001878
Pfam:PF00098 PROSITE:PS50158 SMART:SM00343 GO:GO:0005783
GO:GO:0005829 GO:GO:0005634 GO:GO:0046872 GO:GO:0003677
GO:GO:0008284 GO:GO:0008270 GO:GO:0045944 GO:GO:0006351
eggNOG:COG5082 Gene3D:4.10.60.10 SUPFAM:SSF57756
HOGENOM:HOG000186262 KO:K09250 CTD:7555 HOVERGEN:HBG000397
OrthoDB:EOG45HRZN EMBL:AF004942 IPI:IPI00582111 RefSeq:NP_990238.1
UniGene:Gga.3333 ProteinModelPortal:O42395 STRING:O42395
GeneID:395731 KEGG:gga:395731 InParanoid:O42395 NextBio:20815799
ArrayExpress:O42395 Uniprot:O42395
Length = 172
Score = 130 (50.8 bits), Expect = 6.3e-11, Sum P(2) = 6.3e-11
Identities = 24/64 (37%), Positives = 31/64 (48%)
Query: 190 CFKCGGYGHLARDCITXXXXXXXXXXXXXXXXXXHLARDCXXXXXXXXXSCFNCGKPGHF 249
C++CG GHLA+DC H+A+DC C+NCGKPGH
Sbjct: 48 CYRCGESGHLAKDC-----DLQEDKACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHL 102
Query: 250 AREC 253
AR+C
Sbjct: 103 ARDC 106
Score = 114 (45.2 bits), Expect = 2.8e-09, Sum P(2) = 2.8e-09
Identities = 28/89 (31%), Positives = 38/89 (42%)
Query: 168 HFARDCPRQQXXXXXXXXXXXXCFKCGGYGHLARDCITXXXXXXXXXXXXXXXXXXHLAR 227
H A+DC Q+ C+ CG GH+A+DC HLAR
Sbjct: 56 HLAKDCDLQEDKA---------CYNCGRGGHIAKDC--KEPKREREQCCYNCGKPGHLAR 104
Query: 228 DCXXXXXXXXXSCFNCGKPGHFARECTKV 256
DC C++CG+ GH ++CTKV
Sbjct: 105 DCDHADEQ---KCYSCGEFGHIQKDCTKV 130
Score = 99 (39.9 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
Identities = 20/65 (30%), Positives = 29/65 (44%)
Query: 190 CFKCGGYGHLARDCITXXXXXXXXXXXXXXXXXXHLARDCXXXXXXXXXSCFNCGKPGHF 249
C+ CG +GH+ +DC H+A +C +C+ CG+ GH
Sbjct: 114 CYSCGEFGHIQKDC--------TKVKCYRCGETGHVAINCSKTSEV---NCYRCGESGHL 162
Query: 250 ARECT 254
ARECT
Sbjct: 163 ARECT 167
Score = 94 (38.1 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 21/68 (30%), Positives = 28/68 (41%)
Query: 190 CFKCGGYGHLARDCITXXXXXXXXXXXXXXXXXXHLARDCXXXXXXXXXSCFNCGKPGHF 249
C+ CG GHLARDC H+ +DC C+ CG+ GH
Sbjct: 93 CYNCGKPGHLARDC-----DHADEQKCYSCGEFGHIQKDCTKV------KCYRCGETGHV 141
Query: 250 ARECTKVA 257
A C+K +
Sbjct: 142 AINCSKTS 149
Score = 34 (17.0 bits), Expect = 6.3e-11, Sum P(2) = 6.3e-11
Identities = 6/7 (85%), Positives = 6/7 (85%)
Query: 138 GHVAREC 144
GH AREC
Sbjct: 13 GHWAREC 19
>UNIPROTKB|F1NQ33 [details] [associations]
symbol:F1NQ33 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313 PRINTS:PR00050
SMART:SM00357 Prosite:PS00352 GO:GO:0006355 GO:GO:0003677
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 GeneTree:ENSGT00390000009256 EMBL:AADN02037767
EMBL:AADN02037762 EMBL:AADN02037763 EMBL:AADN02037764
EMBL:AADN02037765 EMBL:AADN02037766 IPI:IPI00819532
Ensembl:ENSGALT00000037028 ArrayExpress:F1NQ33 Uniprot:F1NQ33
Length = 104
Score = 151 (58.2 bits), Expect = 7.4e-11, P = 7.4e-11
Identities = 34/82 (41%), Positives = 50/82 (60%)
Query: 5 TRSTGKVTWFDGAKGYGFIRPDDGGADLFVHQKSIKSDG---Y-RTLYENQSVEFDVQLE 60
T+ G V WF+ GYGFI +D D+FVHQ +IK + Y R++ + ++VEFDV +E
Sbjct: 2 TKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDV-VE 60
Query: 61 ADGKYQALDVTAPGGAPVHSSK 82
+ +A +VT P G PV S+
Sbjct: 61 GEKGAEAANVTGPDGVPVEGSR 82
>UNIPROTKB|J9NV99 [details] [associations]
symbol:CSDA "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313
PRINTS:PR00050 SMART:SM00357 Prosite:PS00352 GO:GO:0006355
GO:GO:0003677 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 GeneTree:ENSGT00390000009256 EMBL:AAEX03015257
EMBL:AAEX03015256 Ensembl:ENSCAFT00000044569 Uniprot:J9NV99
Length = 217
Score = 151 (58.2 bits), Expect = 7.4e-11, P = 7.4e-11
Identities = 34/82 (41%), Positives = 50/82 (60%)
Query: 5 TRSTGKVTWFDGAKGYGFIRPDDGGADLFVHQKSIKSDG---Y-RTLYENQSVEFDVQLE 60
T+ G V WF+ GYGFI +D D+FVHQ +IK + Y R++ + ++VEFDV +E
Sbjct: 4 TKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDV-VE 62
Query: 61 ADGKYQALDVTAPGGAPVHSSK 82
+ +A +VT P G PV S+
Sbjct: 63 GEKGAEAANVTGPDGVPVEGSR 84
>UNIPROTKB|P21574 [details] [associations]
symbol:ybx2-a "Y-box-binding protein 2-A" species:8355
"Xenopus laevis" [GO:0003723 "RNA binding" evidence=IDA]
[GO:0030529 "ribonucleoprotein complex" evidence=IPI] [GO:0043565
"sequence-specific DNA binding" evidence=IDA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=IDA]
InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313 PRINTS:PR00050
SMART:SM00357 Prosite:PS00352 GO:GO:0005737 GO:GO:0045893
GO:GO:0043565 GO:GO:0006351 GO:GO:0003723 GO:GO:0030529
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 HOVERGEN:HBG079361 EMBL:M59454 EMBL:BC155914
EMBL:BC169704 EMBL:BC169706 PIR:B38274 RefSeq:NP_001081274.1
UniGene:Xl.787 ProteinModelPortal:P21574 PRIDE:P21574 GeneID:397746
KEGG:xla:397746 CTD:397746 Xenbase:XB-GENE-6252609 Uniprot:P21574
Length = 336
Score = 155 (59.6 bits), Expect = 1.0e-10, P = 1.0e-10
Identities = 34/82 (41%), Positives = 50/82 (60%)
Query: 5 TRSTGKVTWFDGAKGYGFIRPDDGGADLFVHQKSIKSDG----YRTLYENQSVEFDVQLE 60
T+ G V WF+ GYGFI +D D+FVHQ +IK + R++ + ++VEFDV +E
Sbjct: 40 TQVQGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKFLRSVGDGETVEFDV-VE 98
Query: 61 ADGKYQALDVTAPGGAPVHSSK 82
+ +A +VT PGG PV S+
Sbjct: 99 GEKGAEAANVTGPGGVPVKGSR 120
>UNIPROTKB|G3MX85 [details] [associations]
symbol:LOC539705 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001878 InterPro:IPR002059 InterPro:IPR011129
Pfam:PF00098 Pfam:PF00313 PRINTS:PR00050 PROSITE:PS50158
SMART:SM00343 SMART:SM00357 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 Gene3D:4.10.60.10 SUPFAM:SSF57756
GeneTree:ENSGT00390000001177 EMBL:DAAA02059465
RefSeq:XP_003584165.1 RefSeq:XP_003587957.1
Ensembl:ENSBTAT00000065480 GeneID:539705 KEGG:bta:539705
OMA:CMGSERR Uniprot:G3MX85
Length = 201
Score = 111 (44.1 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 27/80 (33%), Positives = 41/80 (51%)
Query: 3 QLTRSTGKVTWFDGAKGYGFIRPD-------DGGADLFVHQKSIKSDGYRTLYENQSVEF 55
+L G WF+ G+GF+ D D+FVHQ + +G+R+L E ++VEF
Sbjct: 28 RLLHGAGICKWFNVPMGFGFLSMTACAGVALDPPVDVFVHQSKLHMEGFRSLKEGEAVEF 87
Query: 56 DVQLEADGKYQALDVTAPGG 75
+ A G ++L VT P G
Sbjct: 88 TFKKSAKG-LESLRVTGPWG 106
Score = 54 (24.1 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 240 CFNCGKPGHFAREC 253
C+NCG H A+EC
Sbjct: 131 CYNCGGLDHHAKEC 144
Score = 53 (23.7 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 190 CFKCGGYGHLARDC 203
C+ CGG H A++C
Sbjct: 131 CYNCGGLDHHAKEC 144
>TIGR_CMR|BA_5424 [details] [associations]
symbol:BA_5424 "cold shock protein CspC" species:198094
"Bacillus anthracis str. Ames" [GO:0003677 "DNA binding"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0009409 "response to cold"
evidence=ISS] InterPro:IPR002059 InterPro:IPR011129
InterPro:IPR012156 Pfam:PF00313 PIRSF:PIRSF002599 PRINTS:PR00050
SMART:SM00357 Prosite:PS00352 GO:GO:0005737 GO:GO:0006355
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
GO:GO:0006351 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 eggNOG:COG1278 HOGENOM:HOG000070674 KO:K03704
RefSeq:NP_847592.1 RefSeq:YP_022086.2 RefSeq:YP_031279.1
ProteinModelPortal:P62169 SMR:P62169 DNASU:1085020
EnsemblBacteria:EBBACT00000012131 EnsemblBacteria:EBBACT00000018032
EnsemblBacteria:EBBACT00000022166 GeneID:1085020 GeneID:2818619
GeneID:2851935 KEGG:ban:BA_5424 KEGG:bar:GBAA_5424 KEGG:bat:BAS5040
OMA:WTKRTTI ProtClustDB:CLSK873658
BioCyc:BANT260799:GJAJ-5115-MONOMER
BioCyc:BANT261594:GJ7F-5291-MONOMER Uniprot:P62169
Length = 65
Score = 149 (57.5 bits), Expect = 1.2e-10, P = 1.2e-10
Identities = 31/62 (50%), Positives = 42/62 (67%)
Query: 9 GKVTWFDGAKGYGFIRPDDGGADLFVHQKSIKSDGYRTLYENQSVEFDVQLEADGKYQAL 68
G+V WF+ KG+GFI +DG D+FVH +I+ DGY++L E Q VEFD+ A G QA
Sbjct: 3 GRVKWFNAEKGFGFIEREDGD-DVFVHFSAIQQDGYKSLEEGQQVEFDIVDGARGP-QAA 60
Query: 69 DV 70
+V
Sbjct: 61 NV 62
>TIGR_CMR|GSU_0581 [details] [associations]
symbol:GSU_0581 "cold-shock domain family protein"
species:243231 "Geobacter sulfurreducens PCA" [GO:0003677 "DNA
binding" evidence=ISS] [GO:0009409 "response to cold" evidence=ISS]
InterPro:IPR002059 InterPro:IPR011129 InterPro:IPR012156
Pfam:PF00313 PIRSF:PIRSF002599 PRINTS:PR00050 SMART:SM00357
Prosite:PS00352 GO:GO:0005737 GO:GO:0006355 GO:GO:0003677
EMBL:AE017180 GenomeReviews:AE017180_GR Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR019844
HOGENOM:HOG000070674 KO:K03704 RefSeq:NP_951639.1
ProteinModelPortal:Q74FM5 SMR:Q74FM5 GeneID:2685798
KEGG:gsu:GSU0581 PATRIC:22023911 OMA:RAITSAF ProtClustDB:CLSK827926
BioCyc:GSUL243231:GH27-557-MONOMER Uniprot:Q74FM5
Length = 66
Score = 149 (57.5 bits), Expect = 1.2e-10, P = 1.2e-10
Identities = 32/62 (51%), Positives = 42/62 (67%)
Query: 9 GKVTWFDGAKGYGFIRPDDGGADLFVHQKSIKSDGYRTLYENQSVEFDVQLEADGKYQAL 68
G V WF+ +KGYGFI ++G D+FVH SI+ DG++TL E Q+V FDV A G QA
Sbjct: 4 GVVKWFNDSKGYGFIEQENG-EDVFVHFSSIQGDGFKTLVEGQAVTFDVVQGAKG-LQAA 61
Query: 69 DV 70
+V
Sbjct: 62 NV 63
>UNIPROTKB|P21573 [details] [associations]
symbol:ybx1 "Nuclease-sensitive element-binding protein 1"
species:8355 "Xenopus laevis" [GO:0071204 "histone pre-mRNA 3'end
processing complex" evidence=ISS] InterPro:IPR002059
InterPro:IPR011129 Pfam:PF00313 PRINTS:PR00050 SMART:SM00357
Prosite:PS00352 GO:GO:0005737 GO:GO:0006355 GO:GO:0008380
GO:GO:0003677 GO:GO:0006397 GO:GO:0006351 GO:GO:0003723
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 HOVERGEN:HBG008757 GO:GO:0071204 EMBL:M59453
PIR:A38274 UniGene:Xl.2633 ProteinModelPortal:P21573 SMR:P21573
PRIDE:P21573 Xenbase:XB-GENE-865405 Uniprot:P21573
Length = 303
Score = 153 (58.9 bits), Expect = 1.3e-10, P = 1.3e-10
Identities = 35/82 (42%), Positives = 50/82 (60%)
Query: 5 TRSTGKVTWFDGAKGYGFIRPDDGGADLFVHQKSIKSDG---Y-RTLYENQSVEFDVQLE 60
T+ G V WF+ GYGFI +D D+FVHQ +IK + Y R++ + ++VEFDV +E
Sbjct: 35 TKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDV-VE 93
Query: 61 ADGKYQALDVTAPGGAPVHSSK 82
+ +A +VT P G PV SK
Sbjct: 94 GEKGAEAANVTGPEGVPVQGSK 115
>ZFIN|ZDB-GENE-000629-3 [details] [associations]
symbol:ybx1 "Y box binding protein 1" species:7955
"Danio rerio" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR002059
InterPro:IPR011129 Pfam:PF00313 PRINTS:PR00050 SMART:SM00357
Prosite:PS00352 ZFIN:ZDB-GENE-000629-3 GO:GO:0006355 GO:GO:0003677
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 HOVERGEN:HBG008757 EMBL:BC070000 IPI:IPI00837236
UniGene:Dr.59019 ProteinModelPortal:Q6NSP3 SMR:Q6NSP3
InParanoid:Q6NSP3 ArrayExpress:Q6NSP3 Uniprot:Q6NSP3
Length = 310
Score = 153 (58.9 bits), Expect = 1.4e-10, P = 1.4e-10
Identities = 35/82 (42%), Positives = 50/82 (60%)
Query: 5 TRSTGKVTWFDGAKGYGFIRPDDGGADLFVHQKSIKSDG---Y-RTLYENQSVEFDVQLE 60
T+ G V WF+ GYGFI +D D+FVHQ +IK + Y R++ + ++VEF V +E
Sbjct: 37 TKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFAV-VE 95
Query: 61 ADGKYQALDVTAPGGAPVHSSK 82
+ +A +VT PGG PV SK
Sbjct: 96 GEKGAEAANVTGPGGVPVQGSK 117
>UNIPROTKB|F1LXN5 [details] [associations]
symbol:Csda "DNA-binding protein A" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313 PRINTS:PR00050
SMART:SM00357 Prosite:PS00352 RGD:621056 GO:GO:0006355
GO:GO:0003677 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 IPI:IPI00951973 PRIDE:F1LXN5
Ensembl:ENSRNOT00000068352 ArrayExpress:F1LXN5 Uniprot:F1LXN5
Length = 273
Score = 151 (58.2 bits), Expect = 1.5e-10, P = 1.5e-10
Identities = 34/82 (41%), Positives = 50/82 (60%)
Query: 5 TRSTGKVTWFDGAKGYGFIRPDDGGADLFVHQKSIKSDG---Y-RTLYENQSVEFDVQLE 60
T+ G V WF+ GYGFI +D D+FVHQ +IK + Y R++ + ++VEFDV +E
Sbjct: 64 TKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDV-VE 122
Query: 61 ADGKYQALDVTAPGGAPVHSSK 82
+ +A +VT P G PV S+
Sbjct: 123 GEKGAEAANVTGPDGVPVEGSR 144
>UNIPROTKB|D4A0L4 [details] [associations]
symbol:Csda "DNA-binding protein A" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313 PRINTS:PR00050
SMART:SM00357 Prosite:PS00352 RGD:621056 GO:GO:0006355
GO:GO:0003677 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 GeneTree:ENSGT00390000009256 IPI:IPI00959307
Ensembl:ENSRNOT00000068185 ArrayExpress:D4A0L4 Uniprot:D4A0L4
Length = 306
Score = 151 (58.2 bits), Expect = 2.2e-10, P = 2.2e-10
Identities = 34/82 (41%), Positives = 50/82 (60%)
Query: 5 TRSTGKVTWFDGAKGYGFIRPDDGGADLFVHQKSIKSDG---Y-RTLYENQSVEFDVQLE 60
T+ G V WF+ GYGFI +D D+FVHQ +IK + Y R++ + ++VEFDV +E
Sbjct: 81 TKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDV-VE 139
Query: 61 ADGKYQALDVTAPGGAPVHSSK 82
+ +A +VT P G PV S+
Sbjct: 140 GEKGAEAANVTGPDGVPVEGSR 161
>UNIPROTKB|D4AAT9 [details] [associations]
symbol:Csda "DNA-binding protein A" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313 PRINTS:PR00050
SMART:SM00357 Prosite:PS00352 RGD:621056 GO:GO:0006355
GO:GO:0003677 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 IPI:IPI00947719 Ensembl:ENSRNOT00000007347
ArrayExpress:D4AAT9 Uniprot:D4AAT9
Length = 308
Score = 151 (58.2 bits), Expect = 2.3e-10, P = 2.3e-10
Identities = 34/82 (41%), Positives = 50/82 (60%)
Query: 5 TRSTGKVTWFDGAKGYGFIRPDDGGADLFVHQKSIKSDG---Y-RTLYENQSVEFDVQLE 60
T+ G V WF+ GYGFI +D D+FVHQ +IK + Y R++ + ++VEFDV +E
Sbjct: 81 TKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDV-VE 139
Query: 61 ADGKYQALDVTAPGGAPVHSSK 82
+ +A +VT P G PV S+
Sbjct: 140 GEKGAEAANVTGPDGVPVEGSR 161
>UNIPROTKB|F1SQ46 [details] [associations]
symbol:CSDA "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313 PRINTS:PR00050
SMART:SM00357 Prosite:PS00352 GO:GO:0006355 GO:GO:0003677
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 KO:K06099 GeneTree:ENSGT00390000009256
EMBL:CU856689 RefSeq:XP_003355623.1 UniGene:Ssc.9655
Ensembl:ENSSSCT00000000680 GeneID:100518125 KEGG:ssc:100518125
Uniprot:F1SQ46
Length = 312
Score = 151 (58.2 bits), Expect = 2.4e-10, P = 2.4e-10
Identities = 34/82 (41%), Positives = 50/82 (60%)
Query: 5 TRSTGKVTWFDGAKGYGFIRPDDGGADLFVHQKSIKSDG---Y-RTLYENQSVEFDVQLE 60
T+ G V WF+ GYGFI +D D+FVHQ +IK + Y R++ + ++VEFDV +E
Sbjct: 98 TKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDV-VE 156
Query: 61 ADGKYQALDVTAPGGAPVHSSK 82
+ +A +VT P G PV S+
Sbjct: 157 GEKGAEAANVTGPDGVPVEGSR 178
>UNIPROTKB|J9NTE1 [details] [associations]
symbol:CSDA "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313
PRINTS:PR00050 SMART:SM00357 Prosite:PS00352 GO:GO:0006355
GO:GO:0003677 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 GeneTree:ENSGT00390000009256 EMBL:AAEX03015257
EMBL:AAEX03015256 Ensembl:ENSCAFT00000048154 Uniprot:J9NTE1
Length = 314
Score = 151 (58.2 bits), Expect = 2.4e-10, P = 2.4e-10
Identities = 34/82 (41%), Positives = 50/82 (60%)
Query: 5 TRSTGKVTWFDGAKGYGFIRPDDGGADLFVHQKSIKSDG---Y-RTLYENQSVEFDVQLE 60
T+ G V WF+ GYGFI +D D+FVHQ +IK + Y R++ + ++VEFDV +E
Sbjct: 21 TKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDV-VE 79
Query: 61 ADGKYQALDVTAPGGAPVHSSK 82
+ +A +VT P G PV S+
Sbjct: 80 GEKGAEAANVTGPDGVPVEGSR 101
>TIGR_CMR|CPS_0718 [details] [associations]
symbol:CPS_0718 "cold-shock DNA-binding domain family
protein" species:167879 "Colwellia psychrerythraea 34H" [GO:0006355
"regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0009409 "response to cold" evidence=ISS] InterPro:IPR002059
InterPro:IPR011129 InterPro:IPR012156 Pfam:PF00313
PIRSF:PIRSF002599 PRINTS:PR00050 SMART:SM00357 Prosite:PS00352
GO:GO:0005737 GO:GO:0006355 GO:GO:0003677 EMBL:CP000083
GenomeReviews:CP000083_GR Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 InterPro:IPR019844 eggNOG:COG1278
HOGENOM:HOG000070674 KO:K03704 RefSeq:YP_267468.1
ProteinModelPortal:Q488P6 SMR:Q488P6 GeneID:3518546
KEGG:cps:CPS_0718 PATRIC:21464753 OMA:QKGPCAN
ProtClustDB:CLSK768090 BioCyc:CPSY167879:GI48-805-MONOMER
Uniprot:Q488P6
Length = 68
Score = 146 (56.5 bits), Expect = 2.5e-10, P = 2.5e-10
Identities = 28/52 (53%), Positives = 36/52 (69%)
Query: 7 STGKVTWFDGAKGYGFIRPDDGGADLFVHQKSIKSDG-YRTLYENQSVEFDV 57
S G V WF+ KG+GFI P+DG DLFVH I+S G Y TL + Q+VE++V
Sbjct: 2 SKGIVKWFNSDKGFGFITPEDGSKDLFVHHSEIQSGGEYATLADGQTVEYEV 53
>WB|WBGene00000472 [details] [associations]
symbol:cey-1 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005783 "endoplasmic reticulum"
evidence=IDA] InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313
PRINTS:PR00050 SMART:SM00357 Prosite:PS00352 GO:GO:0006355
GO:GO:0003677 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 eggNOG:COG1278 OMA:CFKCGEP EMBL:Z81525
GeneTree:ENSGT00390000009256 HSSP:P41016 PIR:T21689
RefSeq:NP_496366.1 ProteinModelPortal:O62213 SMR:O62213
DIP:DIP-26200N IntAct:O62213 MINT:MINT-1068354 STRING:O62213
PaxDb:O62213 EnsemblMetazoa:F33A8.3.1 EnsemblMetazoa:F33A8.3.2
GeneID:174690 KEGG:cel:CELE_F33A8.3 CTD:174690 WormBase:F33A8.3
HOGENOM:HOG000016800 InParanoid:O62213 NextBio:885082
Uniprot:O62213
Length = 208
Score = 146 (56.5 bits), Expect = 2.5e-10, P = 2.5e-10
Identities = 34/82 (41%), Positives = 46/82 (56%)
Query: 5 TRSTGKVTWFDGAKGYGFIRPDDGGADLFVHQKSIKSDG---Y-RTLYENQSVEFDVQLE 60
T+ G V WF+ GYGFI D D+FVHQ +I ++ Y R+L +N+ V FD+ +E
Sbjct: 19 TKVKGTVKWFNVKNGYGFINRTDTNEDIFVHQTAIINNNPNKYLRSLGDNEEVMFDI-VE 77
Query: 61 ADGKYQALDVTAPGGAPVHSSK 82
+A VT P G PV SK
Sbjct: 78 GSKGLEAASVTGPDGGPVQGSK 99
>UNIPROTKB|Q9KSW4 [details] [associations]
symbol:cspD "Cold shock-like protein CspD" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0006355
"regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0009409 "response to cold" evidence=ISS] InterPro:IPR002059
InterPro:IPR011129 InterPro:IPR012156 InterPro:IPR012751
Pfam:PF00313 PIRSF:PIRSF002599 PRINTS:PR00050 SMART:SM00357
Prosite:PS00352 GO:GO:0005737 GO:GO:0006355 GO:GO:0003677
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0009409 GO:GO:0006351
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 eggNOG:COG1278 KO:K03704 OMA:QVVRFDV
TIGRFAMs:TIGR02381 PIR:C82236 RefSeq:NP_230787.1
ProteinModelPortal:Q9KSW4 SMR:Q9KSW4 DNASU:2614575 GeneID:2614575
KEGG:vch:VC1142 PATRIC:20081376 ProtClustDB:CLSK793973
Uniprot:Q9KSW4
Length = 76
Score = 145 (56.1 bits), Expect = 3.2e-10, P = 3.2e-10
Identities = 28/68 (41%), Positives = 39/68 (57%)
Query: 7 STGKVTWFDGAKGYGFIRPDDGGADLFVHQKSIKSDGYRTLYENQSVEFDVQLEADGKYQ 66
+TG V WF+ AKG+GFI P+ D+F H +I+ DGYRTL Q V + V+ G +
Sbjct: 5 ATGTVKWFNNAKGFGFICPEGEDGDIFAHYSTIQMDGYRTLKAGQQVSYQVEQGPKGYHA 64
Query: 67 ALDVTAPG 74
+ V G
Sbjct: 65 SCVVPIEG 72
>TIGR_CMR|SO_2787 [details] [associations]
symbol:SO_2787 "cold shock domain family protein"
species:211586 "Shewanella oneidensis MR-1" [GO:0003677 "DNA
binding" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0009409 "response to cold"
evidence=ISS] InterPro:IPR002059 InterPro:IPR011129
InterPro:IPR012156 Pfam:PF00313 PIRSF:PIRSF002599 PRINTS:PR00050
SMART:SM00357 Prosite:PS00352 GO:GO:0005737 GO:GO:0006355
GO:GO:0003677 EMBL:AE014299 GenomeReviews:AE014299_GR
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 HOGENOM:HOG000070674 KO:K03704 HSSP:P41016
RefSeq:NP_718365.1 ProteinModelPortal:Q8EDG5 SMR:Q8EDG5
GeneID:1170487 KEGG:son:SO_2787 PATRIC:23525209 OMA:FRAIQGN
ProtClustDB:CLSK906860 Uniprot:Q8EDG5
Length = 69
Score = 145 (56.1 bits), Expect = 3.2e-10, P = 3.2e-10
Identities = 32/71 (45%), Positives = 44/71 (61%)
Query: 4 LTRSTGKVTWFDGAKGYGFIRPDDGGADLFVHQKSIKSDGYRTLYENQSVEFDVQLEADG 63
+++ TG V WF+ KG+GFI + G D+FVH ++I SDG++TL E Q V F V G
Sbjct: 1 MSQVTGVVKWFNSDKGFGFIE-QESGPDVFVHFRAINSDGFKTLDEGQKVSFTVTQGQKG 59
Query: 64 KYQALDVTAPG 74
QA +VT G
Sbjct: 60 P-QAENVTVIG 69
>TIGR_CMR|VC_1142 [details] [associations]
symbol:VC_1142 "cold shock-like protein CspD" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] [GO:0009409 "response
to cold" evidence=ISS] InterPro:IPR002059 InterPro:IPR011129
InterPro:IPR012156 InterPro:IPR012751 Pfam:PF00313
PIRSF:PIRSF002599 PRINTS:PR00050 SMART:SM00357 Prosite:PS00352
GO:GO:0005737 GO:GO:0006355 GO:GO:0003677 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0009409 GO:GO:0006351
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 eggNOG:COG1278 KO:K03704 OMA:QVVRFDV
TIGRFAMs:TIGR02381 PIR:C82236 RefSeq:NP_230787.1
ProteinModelPortal:Q9KSW4 SMR:Q9KSW4 DNASU:2614575 GeneID:2614575
KEGG:vch:VC1142 PATRIC:20081376 ProtClustDB:CLSK793973
Uniprot:Q9KSW4
Length = 76
Score = 145 (56.1 bits), Expect = 3.2e-10, P = 3.2e-10
Identities = 28/68 (41%), Positives = 39/68 (57%)
Query: 7 STGKVTWFDGAKGYGFIRPDDGGADLFVHQKSIKSDGYRTLYENQSVEFDVQLEADGKYQ 66
+TG V WF+ AKG+GFI P+ D+F H +I+ DGYRTL Q V + V+ G +
Sbjct: 5 ATGTVKWFNNAKGFGFICPEGEDGDIFAHYSTIQMDGYRTLKAGQQVSYQVEQGPKGYHA 64
Query: 67 ALDVTAPG 74
+ V G
Sbjct: 65 SCVVPIEG 72
>RGD|1305068 [details] [associations]
symbol:Ybx2 "Y box binding protein 2" species:10116 "Rattus
norvegicus" [GO:0003674 "molecular_function" evidence=ND]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003682 "chromatin
binding" evidence=IEA;ISO] [GO:0003729 "mRNA binding" evidence=ISO]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA;ISO] [GO:0005737
"cytoplasm" evidence=ISO;IDA] [GO:0005844 "polysome"
evidence=IEA;ISO] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0007286 "spermatid development"
evidence=IEA;ISO] [GO:0008289 "lipid binding" evidence=IEA;ISO]
[GO:0017148 "negative regulation of translation" evidence=IEA;ISO]
[GO:0030529 "ribonucleoprotein complex" evidence=ISO] [GO:0043021
"ribonucleoprotein complex binding" evidence=IEA;ISO] [GO:0045182
"translation regulator activity" evidence=IEA;ISO] [GO:0048255
"mRNA stabilization" evidence=IEA;ISO] [GO:0048477 "oogenesis"
evidence=ISO] [GO:0048599 "oocyte development" evidence=IEP]
[GO:0051100 "negative regulation of binding" evidence=IEA;ISO]
InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313 PRINTS:PR00050
SMART:SM00357 Prosite:PS00352 RGD:1305068 GO:GO:0005737
GO:GO:0006355 GO:GO:0007286 GO:GO:0017148 GO:GO:0003677
GO:GO:0003682 GO:GO:0045182 GO:GO:0048255 GO:GO:0008289
GO:GO:0003730 GO:GO:0005844 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 GO:GO:0043021 GO:GO:0048599 InterPro:IPR019844
GO:GO:0051100 OrthoDB:EOG46DM3W GeneTree:ENSGT00390000009256
CTD:51087 KO:K09277 OMA:MEGTDGV IPI:IPI00369907
RefSeq:XP_001079683.1 RefSeq:XP_220618.3 ProteinModelPortal:D4A3P0
Ensembl:ENSRNOT00000023003 GeneID:303250 KEGG:rno:303250
UCSC:RGD:1305068 NextBio:650980 ArrayExpress:D4A3P0 Uniprot:D4A3P0
Length = 359
Score = 151 (58.2 bits), Expect = 3.4e-10, P = 3.4e-10
Identities = 33/78 (42%), Positives = 48/78 (61%)
Query: 9 GKVTWFDGAKGYGFIRPDDGGADLFVHQKSIKSDG----YRTLYENQSVEFDVQLEADGK 64
G V WF+ GYGFI +D D+FVHQ +IK + R++ + ++VEFDV +E +
Sbjct: 97 GTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDV-VEGEKG 155
Query: 65 YQALDVTAPGGAPVHSSK 82
+A +VT PGG PV S+
Sbjct: 156 AEAANVTGPGGVPVKGSR 173
>UNIPROTKB|A5D7M4 [details] [associations]
symbol:YBX2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0051100 "negative regulation of binding" evidence=IEA]
[GO:0048477 "oogenesis" evidence=IEA] [GO:0048255 "mRNA
stabilization" evidence=IEA] [GO:0045182 "translation regulator
activity" evidence=IEA] [GO:0043021 "ribonucleoprotein complex
binding" evidence=IEA] [GO:0017148 "negative regulation of
translation" evidence=IEA] [GO:0008289 "lipid binding"
evidence=IEA] [GO:0007286 "spermatid development" evidence=IEA]
[GO:0005844 "polysome" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR002059
InterPro:IPR011129 Pfam:PF00313 PRINTS:PR00050 SMART:SM00357
Prosite:PS00352 GO:GO:0005737 GO:GO:0006355 GO:GO:0007286
GO:GO:0017148 GO:GO:0003677 GO:GO:0048477 GO:GO:0003682
GO:GO:0045182 GO:GO:0048255 GO:GO:0008289 GO:GO:0003730
GO:GO:0005844 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
GO:GO:0043021 InterPro:IPR019844 GO:GO:0051100 eggNOG:COG1278
HOGENOM:HOG000116439 OrthoDB:EOG46DM3W GeneTree:ENSGT00390000009256
CTD:51087 HOVERGEN:HBG079361 KO:K09277 OMA:MEGTDGV
EMBL:DAAA02048764 EMBL:BC140614 IPI:IPI00705175
RefSeq:NP_001091595.1 UniGene:Bt.62380 SMR:A5D7M4 STRING:A5D7M4
Ensembl:ENSBTAT00000012026 GeneID:614429 KEGG:bta:614429
InParanoid:A5D7M4 NextBio:20899107 Uniprot:A5D7M4
Length = 360
Score = 151 (58.2 bits), Expect = 3.4e-10, P = 3.4e-10
Identities = 33/78 (42%), Positives = 48/78 (61%)
Query: 9 GKVTWFDGAKGYGFIRPDDGGADLFVHQKSIKSDG----YRTLYENQSVEFDVQLEADGK 64
G V WF+ GYGFI +D D+FVHQ +IK + R++ + ++VEFDV +E +
Sbjct: 98 GTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDV-VEGEKG 156
Query: 65 YQALDVTAPGGAPVHSSK 82
+A +VT PGG PV S+
Sbjct: 157 AEAANVTGPGGVPVKGSR 174
>UNIPROTKB|I3LCJ2 [details] [associations]
symbol:YBX2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313 PRINTS:PR00050
SMART:SM00357 Prosite:PS00352 GO:GO:0005737 GO:GO:0006355
GO:GO:0007286 GO:GO:0017148 GO:GO:0003677 GO:GO:0048477
GO:GO:0003682 GO:GO:0045182 GO:GO:0048255 GO:GO:0008289
GO:GO:0003730 GO:GO:0005844 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 GO:GO:0043021 InterPro:IPR019844 GO:GO:0051100
GeneTree:ENSGT00390000009256 KO:K09277 OMA:MEGTDGV EMBL:FP565181
RefSeq:XP_003131986.2 Ensembl:ENSSSCT00000022529 GeneID:100519387
KEGG:ssc:100519387 Uniprot:I3LCJ2
Length = 360
Score = 151 (58.2 bits), Expect = 3.4e-10, P = 3.4e-10
Identities = 33/78 (42%), Positives = 48/78 (61%)
Query: 9 GKVTWFDGAKGYGFIRPDDGGADLFVHQKSIKSDG----YRTLYENQSVEFDVQLEADGK 64
G V WF+ GYGFI +D D+FVHQ +IK + R++ + ++VEFDV +E +
Sbjct: 98 GTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDV-VEGEKG 156
Query: 65 YQALDVTAPGGAPVHSSK 82
+A +VT PGG PV S+
Sbjct: 157 AEAANVTGPGGVPVKGSR 174
>MGI|MGI:2137670 [details] [associations]
symbol:Ybx3 "Y box protein 3" species:10090 "Mus musculus"
[GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=ISO] [GO:0001701 "in utero
embryonic development" evidence=IGI] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IDA]
[GO:0003697 "single-stranded DNA binding" evidence=ISO;IDA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005844 "polysome" evidence=IDA] [GO:0005921 "gap
junction" evidence=ISO] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0007283 "spermatogenesis"
evidence=IMP] [GO:0008584 "male gonad development" evidence=IMP]
[GO:0009566 "fertilization" evidence=IMP] [GO:0030529
"ribonucleoprotein complex" evidence=IDA] [GO:0043066 "negative
regulation of apoptotic process" evidence=IMP] [GO:0046622
"positive regulation of organ growth" evidence=IMP] [GO:0048642
"negative regulation of skeletal muscle tissue development"
evidence=IDA] [GO:0060547 "negative regulation of necrotic cell
death" evidence=ISO] [GO:0071356 "cellular response to tumor
necrosis factor" evidence=ISO] [GO:0071474 "cellular hyperosmotic
response" evidence=ISO] InterPro:IPR002059 InterPro:IPR011129
Pfam:PF00313 PRINTS:PR00050 SMART:SM00357 Prosite:PS00352
MGI:MGI:2137670 GO:GO:0005634 GO:GO:0005737 GO:GO:0043066
GO:GO:0003677 GO:GO:0031100 GO:GO:0001701 GO:GO:0009566
GO:GO:0007283 GO:GO:0006351 GO:GO:0003723 GO:GO:0008584
GO:GO:0000122 GO:GO:0003730 GO:GO:0003697 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0046622 GO:GO:0005921
InterPro:IPR019844 eggNOG:COG1278 CTD:8531 HOGENOM:HOG000116439
HOVERGEN:HBG008757 KO:K06099 OMA:ENQQATS ChiTaRS:CSDA GO:GO:0048642
EMBL:AF246224 EMBL:AF248546 EMBL:AF248547 EMBL:BC048242
EMBL:BC062377 IPI:IPI00274739 IPI:IPI00330591 RefSeq:NP_035863.1
RefSeq:NP_620817.2 UniGene:Mm.458000 ProteinModelPortal:Q9JKB3
SMR:Q9JKB3 DIP:DIP-42746N IntAct:Q9JKB3 MINT:MINT-1891951
STRING:Q9JKB3 PhosphoSite:Q9JKB3 PaxDb:Q9JKB3 PRIDE:Q9JKB3
Ensembl:ENSMUST00000032309 Ensembl:ENSMUST00000087865 GeneID:56449
KEGG:mmu:56449 UCSC:uc009eit.1 GeneTree:ENSGT00390000009256
InParanoid:Q9JKB3 NextBio:312662 Bgee:Q9JKB3 CleanEx:MM_CSDA
Genevestigator:Q9JKB3 GermOnline:ENSMUSG00000030189 Uniprot:Q9JKB3
Length = 361
Score = 151 (58.2 bits), Expect = 3.4e-10, P = 3.4e-10
Identities = 34/82 (41%), Positives = 50/82 (60%)
Query: 5 TRSTGKVTWFDGAKGYGFIRPDDGGADLFVHQKSIKSDG---Y-RTLYENQSVEFDVQLE 60
T+ G V WF+ GYGFI +D D+FVHQ +IK + Y R++ + ++VEFDV +E
Sbjct: 81 TKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDV-VE 139
Query: 61 ADGKYQALDVTAPGGAPVHSSK 82
+ +A +VT P G PV S+
Sbjct: 140 GEKGAEAANVTGPDGVPVEGSR 161
>RGD|621056 [details] [associations]
symbol:Ybx3 "Y box binding protein 3" species:10116 "Rattus
norvegicus" [GO:0000122 "negative regulation of transcription from
RNA polymerase II promoter" evidence=IMP] [GO:0001701 "in utero
embryonic development" evidence=ISO] [GO:0003677 "DNA binding"
evidence=ISO] [GO:0003697 "single-stranded DNA binding"
evidence=ISO;IDA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISO]
[GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005737 "cytoplasm"
evidence=IEA;ISO] [GO:0005921 "gap junction" evidence=IDA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0007283 "spermatogenesis" evidence=IEP;ISO] [GO:0008584 "male
gonad development" evidence=ISO] [GO:0009566 "fertilization"
evidence=ISO] [GO:0031100 "organ regeneration" evidence=IEP]
[GO:0043066 "negative regulation of apoptotic process"
evidence=ISO] [GO:0046622 "positive regulation of organ growth"
evidence=ISO] [GO:0048642 "negative regulation of skeletal muscle
tissue development" evidence=ISO] [GO:0060547 "negative regulation
of necrotic cell death" evidence=ISO] [GO:0071356 "cellular
response to tumor necrosis factor" evidence=ISO] [GO:0071474
"cellular hyperosmotic response" evidence=ISO] [GO:0005844
"polysome" evidence=ISO] [GO:0030529 "ribonucleoprotein complex"
evidence=ISO] InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313
PRINTS:PR00050 SMART:SM00357 Prosite:PS00352 RGD:621056
GO:GO:0005634 GO:GO:0005737 GO:GO:0043066 GO:GO:0031100
GO:GO:0001701 GO:GO:0009566 GO:GO:0007283 GO:GO:0006351
GO:GO:0008584 GO:GO:0000122 GO:GO:0003730 GO:GO:0003697
GO:GO:0005844 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
GO:GO:0046622 GO:GO:0005921 InterPro:IPR019844 eggNOG:COG1278
CTD:8531 HOGENOM:HOG000116439 HOVERGEN:HBG008757 KO:K06099
GO:GO:0048642 EMBL:U22893 EMBL:D28557 IPI:IPI00208217
IPI:IPI00231811 PIR:S51608 RefSeq:NP_114185.3 UniGene:Rn.3306
ProteinModelPortal:Q62764 SMR:Q62764 IntAct:Q62764
MINT:MINT-4597726 STRING:Q62764 PhosphoSite:Q62764 PRIDE:Q62764
GeneID:83807 KEGG:rno:83807 UCSC:RGD:621056 InParanoid:Q62764
ArrayExpress:Q62764 Genevestigator:Q62764
GermOnline:ENSRNOG00000005480 Uniprot:Q62764
Length = 361
Score = 151 (58.2 bits), Expect = 3.4e-10, P = 3.4e-10
Identities = 34/82 (41%), Positives = 50/82 (60%)
Query: 5 TRSTGKVTWFDGAKGYGFIRPDDGGADLFVHQKSIKSDG---Y-RTLYENQSVEFDVQLE 60
T+ G V WF+ GYGFI +D D+FVHQ +IK + Y R++ + ++VEFDV +E
Sbjct: 81 TKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDV-VE 139
Query: 61 ADGKYQALDVTAPGGAPVHSSK 82
+ +A +VT P G PV S+
Sbjct: 140 GEKGAEAANVTGPDGVPVEGSR 161
>UNIPROTKB|F1MA18 [details] [associations]
symbol:Csda "DNA-binding protein A" species:10116 "Rattus
norvegicus" [GO:0001701 "in utero embryonic development"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003730
"mRNA 3'-UTR binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005844
"polysome" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0008584 "male gonad development"
evidence=IEA] [GO:0009566 "fertilization" evidence=IEA] [GO:0043066
"negative regulation of apoptotic process" evidence=IEA]
[GO:0046622 "positive regulation of organ growth" evidence=IEA]
[GO:0048642 "negative regulation of skeletal muscle tissue
development" evidence=IEA] InterPro:IPR002059 InterPro:IPR011129
Pfam:PF00313 PRINTS:PR00050 SMART:SM00357 Prosite:PS00352
RGD:621056 GO:GO:0005634 GO:GO:0005737 GO:GO:0043066 GO:GO:0006355
GO:GO:0003677 GO:GO:0001701 GO:GO:0009566 GO:GO:0007283
GO:GO:0008584 GO:GO:0003730 GO:GO:0005844 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0046622 InterPro:IPR019844
OMA:ENQQATS GO:GO:0048642 GeneTree:ENSGT00390000009256
IPI:IPI01016461 Ensembl:ENSRNOT00000007427 ArrayExpress:F1MA18
Uniprot:F1MA18
Length = 361
Score = 151 (58.2 bits), Expect = 3.4e-10, P = 3.4e-10
Identities = 34/82 (41%), Positives = 50/82 (60%)
Query: 5 TRSTGKVTWFDGAKGYGFIRPDDGGADLFVHQKSIKSDG---Y-RTLYENQSVEFDVQLE 60
T+ G V WF+ GYGFI +D D+FVHQ +IK + Y R++ + ++VEFDV +E
Sbjct: 81 TKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDV-VE 139
Query: 61 ADGKYQALDVTAPGGAPVHSSK 82
+ +A +VT P G PV S+
Sbjct: 140 GEKGAEAANVTGPDGVPVEGSR 161
>UNIPROTKB|Q9Y2T7 [details] [associations]
symbol:YBX2 "Y-box-binding protein 2" species:9606 "Homo
sapiens" [GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding"
evidence=IEA] [GO:0005844 "polysome" evidence=IEA] [GO:0007286
"spermatid development" evidence=IEA] [GO:0008289 "lipid binding"
evidence=IEA] [GO:0017148 "negative regulation of translation"
evidence=IEA] [GO:0043021 "ribonucleoprotein complex binding"
evidence=IEA] [GO:0045182 "translation regulator activity"
evidence=IEA] [GO:0048255 "mRNA stabilization" evidence=IEA]
[GO:0048599 "oocyte development" evidence=IEA] [GO:0051100
"negative regulation of binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=TAS] [GO:0007283 "spermatogenesis" evidence=TAS]
[GO:0009386 "translational attenuation" evidence=TAS]
InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313 PRINTS:PR00050
SMART:SM00357 Prosite:PS00352 GO:GO:0005634 GO:GO:0005737
EMBL:CH471108 GO:GO:0006355 GO:GO:0007286 GO:GO:0017148
GO:GO:0003677 GO:GO:0007283 GO:GO:0003682 GO:GO:0045182
GO:GO:0048255 GO:GO:0006366 GO:GO:0008289 GO:GO:0003730
GO:GO:0005844 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
GO:GO:0043021 GO:GO:0048599 InterPro:IPR019844 GO:GO:0051100
eggNOG:COG1278 HOGENOM:HOG000116439 OrthoDB:EOG46DM3W EMBL:AF096834
EMBL:BC033800 EMBL:BC047760 IPI:IPI00250153 RefSeq:NP_057066.2
UniGene:Hs.567494 ProteinModelPortal:Q9Y2T7 SMR:Q9Y2T7
STRING:Q9Y2T7 PhosphoSite:Q9Y2T7 DMDM:116242847 PaxDb:Q9Y2T7
PRIDE:Q9Y2T7 Ensembl:ENST00000007699 GeneID:51087 KEGG:hsa:51087
UCSC:uc002gfq.2 CTD:51087 GeneCards:GC17M007191 HGNC:HGNC:17948
HPA:CAB012332 MIM:611447 neXtProt:NX_Q9Y2T7 PharmGKB:PA142670560
HOVERGEN:HBG079361 InParanoid:Q9Y2T7 KO:K09277 OMA:MEGTDGV
PhylomeDB:Q9Y2T7 ChiTaRS:YBX2 GenomeRNAi:51087 NextBio:53755
Bgee:Q9Y2T7 CleanEx:HS_YBX2 Genevestigator:Q9Y2T7
GermOnline:ENSG00000006047 GO:GO:0009386 Uniprot:Q9Y2T7
Length = 364
Score = 151 (58.2 bits), Expect = 3.5e-10, P = 3.5e-10
Identities = 33/78 (42%), Positives = 48/78 (61%)
Query: 9 GKVTWFDGAKGYGFIRPDDGGADLFVHQKSIKSDG----YRTLYENQSVEFDVQLEADGK 64
G V WF+ GYGFI +D D+FVHQ +IK + R++ + ++VEFDV +E +
Sbjct: 96 GTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDV-VEGEKG 154
Query: 65 YQALDVTAPGGAPVHSSK 82
+A +VT PGG PV S+
Sbjct: 155 AEATNVTGPGGVPVKGSR 172
>UNIPROTKB|F1SFU0 [details] [associations]
symbol:LOC100736899 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313
PRINTS:PR00050 SMART:SM00357 Prosite:PS00352 GO:GO:0006355
GO:GO:0003677 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 GeneTree:ENSGT00390000009256 EMBL:CU681851
Ensembl:ENSSSCT00000019522 OMA:XKERAPL Uniprot:F1SFU0
Length = 365
Score = 151 (58.2 bits), Expect = 3.5e-10, P = 3.5e-10
Identities = 33/78 (42%), Positives = 48/78 (61%)
Query: 9 GKVTWFDGAKGYGFIRPDDGGADLFVHQKSIKSDG----YRTLYENQSVEFDVQLEADGK 64
G V WF+ GYGFI +D D+FVHQ +IK + R++ + ++VEFDV +E +
Sbjct: 98 GTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDV-VEGEKG 156
Query: 65 YQALDVTAPGGAPVHSSK 82
+A +VT PGG PV S+
Sbjct: 157 AEAANVTGPGGVPVKGSR 174
>UNIPROTKB|E2RMN5 [details] [associations]
symbol:YBX2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313
PRINTS:PR00050 SMART:SM00357 Prosite:PS00352 GO:GO:0005737
GO:GO:0006355 GO:GO:0007286 GO:GO:0017148 GO:GO:0003677
GO:GO:0048477 GO:GO:0003682 GO:GO:0045182 GO:GO:0048255
GO:GO:0008289 GO:GO:0003730 GO:GO:0005844 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0043021 InterPro:IPR019844
GO:GO:0051100 GeneTree:ENSGT00390000009256 OMA:MEGTDGV
EMBL:AAEX03003607 Ensembl:ENSCAFT00000021272 NextBio:20862641
Uniprot:E2RMN5
Length = 367
Score = 151 (58.2 bits), Expect = 3.6e-10, P = 3.6e-10
Identities = 33/78 (42%), Positives = 48/78 (61%)
Query: 9 GKVTWFDGAKGYGFIRPDDGGADLFVHQKSIKSDG----YRTLYENQSVEFDVQLEADGK 64
G V WF+ GYGFI +D D+FVHQ +IK + R++ + ++VEFDV +E +
Sbjct: 98 GTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDV-VEGEKG 156
Query: 65 YQALDVTAPGGAPVHSSK 82
+A +VT PGG PV S+
Sbjct: 157 AEAANVTGPGGVPVKGSR 174
>UNIPROTKB|F1PB10 [details] [associations]
symbol:CSDA "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313
PRINTS:PR00050 SMART:SM00357 Prosite:PS00352 GO:GO:0006355
GO:GO:0003677 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 OMA:ENQQATS GeneTree:ENSGT00390000009256
EMBL:AAEX03015257 EMBL:AAEX03015256 Ensembl:ENSCAFT00000021267
Uniprot:F1PB10
Length = 370
Score = 151 (58.2 bits), Expect = 3.6e-10, P = 3.6e-10
Identities = 34/82 (41%), Positives = 50/82 (60%)
Query: 5 TRSTGKVTWFDGAKGYGFIRPDDGGADLFVHQKSIKSDG---Y-RTLYENQSVEFDVQLE 60
T+ G V WF+ GYGFI +D D+FVHQ +IK + Y R++ + ++VEFDV +E
Sbjct: 89 TKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDV-VE 147
Query: 61 ADGKYQALDVTAPGGAPVHSSK 82
+ +A +VT P G PV S+
Sbjct: 148 GEKGAEAANVTGPDGVPVEGSR 169
>UNIPROTKB|P16989 [details] [associations]
symbol:CSDA "DNA-binding protein A" species:9606 "Homo
sapiens" [GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0001701 "in utero embryonic development" evidence=IEA]
[GO:0005844 "polysome" evidence=IEA] [GO:0008584 "male gonad
development" evidence=IEA] [GO:0009566 "fertilization"
evidence=IEA] [GO:0043066 "negative regulation of apoptotic
process" evidence=IEA] [GO:0046622 "positive regulation of organ
growth" evidence=IEA] [GO:0048642 "negative regulation of skeletal
muscle tissue development" evidence=IEA] [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=TAS] [GO:0003690 "double-stranded DNA binding"
evidence=TAS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=NAS] [GO:0003714
"transcription corepressor activity" evidence=TAS] [GO:0009409
"response to cold" evidence=TAS] [GO:0017048 "Rho GTPase binding"
evidence=ISS] [GO:0060547 "negative regulation of necrotic cell
death" evidence=IMP] [GO:0071474 "cellular hyperosmotic response"
evidence=IMP] [GO:0071356 "cellular response to tumor necrosis
factor" evidence=IMP] [GO:2000767 "positive regulation of
cytoplasmic translation" evidence=ISS] [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005923 "tight junction" evidence=ISS] [GO:0048471 "perinuclear
region of cytoplasm" evidence=ISS] [GO:0070935 "3'-UTR-mediated
mRNA stabilization" evidence=IC] [GO:0005737 "cytoplasm"
evidence=IDA] InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313
PRINTS:PR00050 SMART:SM00357 Prosite:PS00352 GO:GO:0005634
GO:GO:0005737 GO:GO:0003714 GO:GO:0043066 GO:GO:0031100
GO:GO:0009409 GO:GO:0001701 GO:GO:0009566 GO:GO:0003700
GO:GO:0007283 GO:GO:0006351 GO:GO:0008584 GO:GO:0000122
GO:GO:0003730 GO:GO:0003690 GO:GO:0003697 EMBL:CH471094
GO:GO:0005844 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
GO:GO:0046622 GO:GO:0005921 InterPro:IPR019844 eggNOG:COG1278
EMBL:M24069 EMBL:L29071 EMBL:L29064 EMBL:L29065 EMBL:L29066
EMBL:L29067 EMBL:L29068 EMBL:L29069 EMBL:L29070 EMBL:X95325
EMBL:X72712 EMBL:AK314846 EMBL:BC008801 EMBL:BC015564 EMBL:BC015913
EMBL:BC021926 IPI:IPI00031801 IPI:IPI00219147 IPI:IPI00219148
PIR:I53354 PIR:S69501 RefSeq:NP_001138898.1 RefSeq:NP_003642.3
UniGene:Hs.221889 ProteinModelPortal:P16989 SMR:P16989
DIP:DIP-42489N IntAct:P16989 MINT:MINT-1152000 STRING:P16989
PhosphoSite:P16989 DMDM:97536050 PaxDb:P16989 PRIDE:P16989
DNASU:8531 Ensembl:ENST00000228251 Ensembl:ENST00000279550
GeneID:8531 KEGG:hsa:8531 UCSC:uc001qyt.3 UCSC:uc001qyu.3 CTD:8531
GeneCards:GC12M010851 HGNC:HGNC:2428 HPA:HPA034838 MIM:603437
neXtProt:NX_P16989 PharmGKB:PA26929 HOGENOM:HOG000116439
HOVERGEN:HBG008757 InParanoid:P16989 KO:K06099 OMA:ENQQATS
OrthoDB:EOG46DM3W PhylomeDB:P16989 ChiTaRS:CSDA GenomeRNAi:8531
NextBio:31948 PMAP-CutDB:P16989 Bgee:P16989 CleanEx:HS_CSDA
Genevestigator:P16989 GermOnline:ENSG00000060138 GO:GO:0048642
Uniprot:P16989
Length = 372
Score = 151 (58.2 bits), Expect = 3.7e-10, P = 3.7e-10
Identities = 34/82 (41%), Positives = 50/82 (60%)
Query: 5 TRSTGKVTWFDGAKGYGFIRPDDGGADLFVHQKSIKSDG---Y-RTLYENQSVEFDVQLE 60
T+ G V WF+ GYGFI +D D+FVHQ +IK + Y R++ + ++VEFDV +E
Sbjct: 89 TKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDV-VE 147
Query: 61 ADGKYQALDVTAPGGAPVHSSK 82
+ +A +VT P G PV S+
Sbjct: 148 GEKGAEAANVTGPDGVPVEGSR 169
>UNIPROTKB|A5D7Q4 [details] [associations]
symbol:CSDA "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0048642 "negative regulation of skeletal muscle tissue
development" evidence=IEA] [GO:0046622 "positive regulation of
organ growth" evidence=IEA] [GO:0043066 "negative regulation of
apoptotic process" evidence=IEA] [GO:0009566 "fertilization"
evidence=IEA] [GO:0008584 "male gonad development" evidence=IEA]
[GO:0005844 "polysome" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003730 "mRNA
3'-UTR binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] InterPro:IPR002059 InterPro:IPR011129
Pfam:PF00313 PRINTS:PR00050 SMART:SM00357 Prosite:PS00352
GO:GO:0005634 GO:GO:0005737 GO:GO:0043066 GO:GO:0006355
GO:GO:0003677 GO:GO:0001701 GO:GO:0009566 GO:GO:0007283
GO:GO:0008584 GO:GO:0003730 GO:GO:0005844 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0046622 InterPro:IPR019844
eggNOG:COG1278 CTD:8531 HOGENOM:HOG000116439 HOVERGEN:HBG008757
KO:K06099 OMA:ENQQATS GO:GO:0048642 GeneTree:ENSGT00390000009256
EMBL:DAAA02014333 EMBL:BC140644 IPI:IPI00852465
RefSeq:NP_001091543.1 UniGene:Bt.7655 SMR:A5D7Q4 STRING:A5D7Q4
Ensembl:ENSBTAT00000012735 GeneID:533297 KEGG:bta:533297
InParanoid:A5D7Q4 NextBio:20875990 Uniprot:A5D7Q4
Length = 376
Score = 151 (58.2 bits), Expect = 3.8e-10, P = 3.8e-10
Identities = 34/82 (41%), Positives = 50/82 (60%)
Query: 5 TRSTGKVTWFDGAKGYGFIRPDDGGADLFVHQKSIKSDG---Y-RTLYENQSVEFDVQLE 60
T+ G V WF+ GYGFI +D D+FVHQ +IK + Y R++ + ++VEFDV +E
Sbjct: 95 TKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDV-VE 153
Query: 61 ADGKYQALDVTAPGGAPVHSSK 82
+ +A +VT P G PV S+
Sbjct: 154 GEKGAEAANVTGPDGVPVEGSR 175
>UNIPROTKB|I3LQF8 [details] [associations]
symbol:CSDA "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0048642 "negative regulation of skeletal muscle tissue
development" evidence=IEA] [GO:0046622 "positive regulation of
organ growth" evidence=IEA] [GO:0043066 "negative regulation of
apoptotic process" evidence=IEA] [GO:0009566 "fertilization"
evidence=IEA] [GO:0008584 "male gonad development" evidence=IEA]
[GO:0005844 "polysome" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003730 "mRNA
3'-UTR binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] InterPro:IPR002059 InterPro:IPR011129
Pfam:PF00313 PRINTS:PR00050 SMART:SM00357 Prosite:PS00352
GO:GO:0005634 GO:GO:0005737 GO:GO:0043066 GO:GO:0006355
GO:GO:0003677 GO:GO:0001701 GO:GO:0009566 GO:GO:0007283
GO:GO:0008584 GO:GO:0003730 GO:GO:0005844 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0046622 InterPro:IPR019844
KO:K06099 OMA:ENQQATS GO:GO:0048642 GeneTree:ENSGT00390000009256
EMBL:CU856689 UniGene:Ssc.9655 GeneID:100518125 KEGG:ssc:100518125
RefSeq:XP_003126523.1 Ensembl:ENSSSCT00000027246 Uniprot:I3LQF8
Length = 380
Score = 151 (58.2 bits), Expect = 3.9e-10, P = 3.9e-10
Identities = 34/82 (41%), Positives = 50/82 (60%)
Query: 5 TRSTGKVTWFDGAKGYGFIRPDDGGADLFVHQKSIKSDG---Y-RTLYENQSVEFDVQLE 60
T+ G V WF+ GYGFI +D D+FVHQ +IK + Y R++ + ++VEFDV +E
Sbjct: 98 TKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDV-VE 156
Query: 61 ADGKYQALDVTAPGGAPVHSSK 82
+ +A +VT P G PV S+
Sbjct: 157 GEKGAEAANVTGPDGVPVEGSR 178
>FB|FBgn0022959 [details] [associations]
symbol:yps "ypsilon schachtel" species:7227 "Drosophila
melanogaster" [GO:0005634 "nucleus" evidence=ISS] [GO:0003676
"nucleic acid binding" evidence=ISS] [GO:0003729 "mRNA binding"
evidence=TAS] [GO:0048477 "oogenesis" evidence=NAS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000398 "mRNA splicing,
via spliceosome" evidence=IC] [GO:0071013 "catalytic step 2
spliceosome" evidence=IDA] [GO:0071011 "precatalytic spliceosome"
evidence=IDA] InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313
PRINTS:PR00050 SMART:SM00357 Prosite:PS00352 GO:GO:0006355
GO:GO:0003677 GO:GO:0003729 GO:GO:0048477 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0071011 GO:GO:0000398
GO:GO:0071013 InterPro:IPR019844 HSSP:O54310 EMBL:U49120
ProteinModelPortal:O46173 SMR:O46173 IntAct:O46173 STRING:O46173
PaxDb:O46173 PRIDE:O46173 FlyBase:FBgn0022959 eggNOG:NOG317970
InParanoid:O46173 OrthoDB:EOG4MPG6H ChiTaRS:yps ArrayExpress:O46173
Bgee:O46173 Uniprot:O46173
Length = 359
Score = 150 (57.9 bits), Expect = 4.4e-10, P = 4.4e-10
Identities = 33/81 (40%), Positives = 48/81 (59%)
Query: 5 TRSTGKVTWFDGAKGYGFIRPDDGGADLFVHQKSIKSD---GYRTLYENQSVEFDVQLEA 61
T+ TG V WF+ GYGFI +D D+FVHQ +I ++ R++ + + VEFDV +
Sbjct: 61 TKVTGTVKWFNVKSGYGFINRNDTREDVFVHQSAIANNPKKAVRSVGDGEVVEFDVVIGE 120
Query: 62 DGKYQALDVTAPGGAPVHSSK 82
G +A +VT P G PV S+
Sbjct: 121 KGN-EAANVTGPSGEPVRGSQ 140
>MGI|MGI:1096372 [details] [associations]
symbol:Ybx2 "Y box protein 2" species:10090 "Mus musculus"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003729
"mRNA binding" evidence=IDA] [GO:0003730 "mRNA 3'-UTR binding"
evidence=IDA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISO;IDA] [GO:0005844 "polysome" evidence=IDA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0007286 "spermatid development" evidence=IMP]
[GO:0008289 "lipid binding" evidence=IDA] [GO:0017148 "negative
regulation of translation" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA] [GO:0043021
"ribonucleoprotein complex binding" evidence=IDA] [GO:0045182
"translation regulator activity" evidence=IDA] [GO:0048255 "mRNA
stabilization" evidence=IMP] [GO:0048477 "oogenesis" evidence=IMP]
[GO:0051100 "negative regulation of binding" evidence=IMP]
InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313 PRINTS:PR00050
SMART:SM00357 Prosite:PS00352 MGI:MGI:1096372 GO:GO:0005634
GO:GO:0005737 GO:GO:0006355 GO:GO:0007286 GO:GO:0017148
GO:GO:0003677 GO:GO:0048477 GO:GO:0003682 GO:GO:0045182
GO:GO:0048255 EMBL:AL596185 GO:GO:0008289 GO:GO:0003730
GO:GO:0005844 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
GO:GO:0043021 InterPro:IPR019844 GO:GO:0051100 eggNOG:COG1278
HOGENOM:HOG000116439 OrthoDB:EOG46DM3W GeneTree:ENSGT00390000009256
CTD:51087 HOVERGEN:HBG079361 KO:K09277 ChiTaRS:YBX2 EMBL:AF073954
EMBL:AF073955 IPI:IPI00131034 IPI:IPI00553286 RefSeq:NP_058571.2
UniGene:Mm.29286 ProteinModelPortal:Q9Z2C8 SMR:Q9Z2C8
DIP:DIP-59783N STRING:Q9Z2C8 PhosphoSite:Q9Z2C8
REPRODUCTION-2DPAGE:Q9Z2C8 PaxDb:Q9Z2C8 PRIDE:Q9Z2C8
Ensembl:ENSMUST00000108601 GeneID:53422 KEGG:mmu:53422
InParanoid:Q9Z2C8 NextBio:310261 Bgee:Q9Z2C8 CleanEx:MM_YBX2
Genevestigator:Q9Z2C8 GermOnline:ENSMUSG00000018554 Uniprot:Q9Z2C8
Length = 360
Score = 150 (57.9 bits), Expect = 4.4e-10, P = 4.4e-10
Identities = 33/78 (42%), Positives = 48/78 (61%)
Query: 9 GKVTWFDGAKGYGFIRPDDGGADLFVHQKSIKSDG----YRTLYENQSVEFDVQLEADGK 64
G V WF+ GYGFI +D D+FVHQ +IK + R++ + ++VEFDV +E +
Sbjct: 98 GTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDV-VEGEKG 156
Query: 65 YQALDVTAPGGAPVHSSK 82
+A +VT PGG PV S+
Sbjct: 157 ARAANVTGPGGVPVKGSR 174
>TIGR_CMR|SPO_3625 [details] [associations]
symbol:SPO_3625 "cold shock protein CspA" species:246200
"Ruegeria pomeroyi DSS-3" [GO:0003677 "DNA binding" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0009409 "response to cold" evidence=ISS]
InterPro:IPR002059 InterPro:IPR011129 InterPro:IPR012156
Pfam:PF00313 PIRSF:PIRSF002599 PRINTS:PR00050 SMART:SM00357
Prosite:PS00352 GO:GO:0005737 GO:GO:0006355 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0003677 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR019844 KO:K03704
HOGENOM:HOG000070673 RefSeq:YP_168819.1 ProteinModelPortal:Q5LMD9
SMR:Q5LMD9 GeneID:3195668 KEGG:sil:SPO3625 PATRIC:23380729
OMA:TMDGFKT Uniprot:Q5LMD9
Length = 68
Score = 143 (55.4 bits), Expect = 5.2e-10, P = 5.2e-10
Identities = 24/64 (37%), Positives = 41/64 (64%)
Query: 7 STGKVTWFDGAKGYGFIRPDDGGADLFVHQKSIKSDGYRTLYENQSVEFDVQLEADGKYQ 66
+ G V WF+ KG+GFI P+ G D+FVH +++ G + L + Q+V FD++ DG+
Sbjct: 2 ANGTVKWFNSQKGFGFIAPEQGSKDVFVHISALERSGIQKLDDGQAVTFDIESGRDGRES 61
Query: 67 ALDV 70
A+++
Sbjct: 62 AINL 65
>UNIPROTKB|F1PF55 [details] [associations]
symbol:F1PF55 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313
PRINTS:PR00050 SMART:SM00357 Prosite:PS00352 GO:GO:0006355
GO:GO:0003677 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 GeneTree:ENSGT00390000009256 EMBL:AAEX03026423
EMBL:AAEX03026424 Ensembl:ENSCAFT00000026166 Uniprot:F1PF55
Length = 216
Score = 142 (55.0 bits), Expect = 6.6e-10, P = 6.6e-10
Identities = 33/81 (40%), Positives = 48/81 (59%)
Query: 6 RSTGKVTWFDGAKGYGFIRPDDGGADLFVHQKSIKSDG---Y-RTLYENQSVEFDVQLEA 61
R G V WF+ GYGFI D D+FVHQ +I + Y R++ + ++VEFDV ++
Sbjct: 30 RVRGSVKWFNVKNGYGFISRHDTQEDVFVHQTAITRNNPHKYQRSVGDGETVEFDV-VQG 88
Query: 62 DGKYQALDVTAPGGAPVHSSK 82
+ +A +VT P GAPV S+
Sbjct: 89 ERGTEAANVTGPAGAPVQGSR 109
>UNIPROTKB|F1PF53 [details] [associations]
symbol:F1PF53 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313
PRINTS:PR00050 SMART:SM00357 Prosite:PS00352 GO:GO:0006355
GO:GO:0003677 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 GeneTree:ENSGT00390000009256 EMBL:AAEX03026423
EMBL:AAEX03026424 Ensembl:ENSCAFT00000026168 OMA:ERESDWQ
Uniprot:F1PF53
Length = 231
Score = 142 (55.0 bits), Expect = 7.5e-10, P = 7.5e-10
Identities = 33/81 (40%), Positives = 48/81 (59%)
Query: 6 RSTGKVTWFDGAKGYGFIRPDDGGADLFVHQKSIKSDG---Y-RTLYENQSVEFDVQLEA 61
R G V WF+ GYGFI D D+FVHQ +I + Y R++ + ++VEFDV ++
Sbjct: 16 RVRGSVKWFNVKNGYGFISRHDTQEDVFVHQTAITRNNPHKYQRSVGDGETVEFDV-VQG 74
Query: 62 DGKYQALDVTAPGGAPVHSSK 82
+ +A +VT P GAPV S+
Sbjct: 75 ERGTEAANVTGPAGAPVQGSR 95
>UNIPROTKB|G4N4A8 [details] [associations]
symbol:MGG_05948 "Zinc knuckle domain-containing protein"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001878 Pfam:PF00098 PROSITE:PS50158
SMART:SM00343 EMBL:CM001233 GO:GO:0046872 GO:GO:0008270
GO:GO:0003676 Gene3D:4.10.60.10 SUPFAM:SSF57756 KO:K09250
RefSeq:XP_003711783.1 ProteinModelPortal:G4N4A8
EnsemblFungi:MGG_05948T0 GeneID:2684027 KEGG:mgr:MGG_05948
Uniprot:G4N4A8
Length = 199
Score = 115 (45.5 bits), Expect = 8.8e-10, Sum P(2) = 8.8e-10
Identities = 20/64 (31%), Positives = 27/64 (42%)
Query: 190 CFKCGGYGHLARDCITXXXXXXXXXXXXXXXXXXHLARDCXXXXXXXXXSCFNCGKPGHF 249
C+ CGG GH++RDC+ H +RDC C+ C +PGH
Sbjct: 140 CYSCGGVGHMSRDCVNGSKCYNCGETG-------HFSRDCSKRSTTGEKMCYKCQQPGHV 192
Query: 250 AREC 253
EC
Sbjct: 193 QAEC 196
Score = 106 (42.4 bits), Expect = 2.8e-05, P = 2.8e-05
Identities = 28/100 (28%), Positives = 37/100 (37%)
Query: 166 PEHFARDCPRQQXXXXXXXXXXXXCFKCGGYGHLARDCITXXXXXXXXXXXXXXXXXXHL 225
P H ARDCP + C+ CGG GH++R C H+
Sbjct: 22 PNHQARDCPNR---------GAAKCYNCGGEGHISRAC---PEEPKDQKICYRCSQPGHI 69
Query: 226 ARDCXXXXX----------XXXXSCFNCGKPGHFARECTK 255
+RDC C+ CG+ GH AR C+K
Sbjct: 70 SRDCPSGGAGGGGGGGGGQSSGAECYKCGEVGHIARNCSK 109
Score = 40 (19.1 bits), Expect = 8.8e-10, Sum P(2) = 8.8e-10
Identities = 6/9 (66%), Positives = 8/9 (88%)
Query: 137 VGHVARECT 145
VGH+AR C+
Sbjct: 100 VGHIARNCS 108
Score = 34 (17.0 bits), Expect = 3.6e-09, Sum P(2) = 3.6e-09
Identities = 4/7 (57%), Positives = 7/7 (100%)
Query: 138 GHVAREC 144
GH++R+C
Sbjct: 67 GHISRDC 73
>UNIPROTKB|B4DP17 [details] [associations]
symbol:CNBP "cDNA FLJ61146, highly similar to Cellular
nucleic acid-binding protein" species:9606 "Homo sapiens"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] InterPro:IPR001878 Pfam:PF00098
PROSITE:PS50158 SMART:SM00343 GO:GO:0046872 GO:GO:0008270
GO:GO:0003676 Gene3D:4.10.60.10 SUPFAM:SSF57756
HOGENOM:HOG000186262 HOVERGEN:HBG000397 EMBL:AC108673 EMBL:AC135587
UniGene:Hs.518249 HGNC:HGNC:13164 ChiTaRS:CNBP EMBL:AK298154
IPI:IPI00977873 SMR:B4DP17 STRING:B4DP17 Ensembl:ENST00000500450
UCSC:uc011bku.2 Uniprot:B4DP17
Length = 160
Score = 140 (54.3 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 29/87 (33%), Positives = 38/87 (43%)
Query: 168 HFARDCPRQQXXXXXXXXXXXX-CFKCGGYGHLARDCITXXXXXXXXXXXXXXXXXXHLA 226
H+AR+CP C++CG GHLA+DC H+A
Sbjct: 14 HWARECPTGGGRGRGMRSRGRDICYRCGESGHLAKDC------DLQEDACYNCGRGGHIA 67
Query: 227 RDCXXXXXXXXXSCFNCGKPGHFAREC 253
+DC C+NCGKPGH AR+C
Sbjct: 68 KDCKEPKREREQCCYNCGKPGHLARDC 94
Score = 110 (43.8 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 24/69 (34%), Positives = 31/69 (44%)
Query: 190 CFKCGGYGHLARDCITXXXXXXXXXXXXXXX-----XXXHLARDCXXXXXXXXXSCFNCG 244
CFKCG GH AR+C T HLA+DC +C+NCG
Sbjct: 6 CFKCGRSGHWARECPTGGGRGRGMRSRGRDICYRCGESGHLAKDCDLQED----ACYNCG 61
Query: 245 KPGHFAREC 253
+ GH A++C
Sbjct: 62 RGGHIAKDC 70
Score = 99 (39.9 bits), Expect = 0.00023, P = 0.00023
Identities = 20/65 (30%), Positives = 29/65 (44%)
Query: 190 CFKCGGYGHLARDCITXXXXXXXXXXXXXXXXXXHLARDCXXXXXXXXXSCFNCGKPGHF 249
C+ CG +GH+ +DC H+A +C +C+ CG+ GH
Sbjct: 102 CYSCGEFGHIQKDC--------TKVKCYRCGETGHVAINCSKTSEV---NCYRCGESGHL 150
Query: 250 ARECT 254
ARECT
Sbjct: 151 ARECT 155
>TIGR_CMR|BA_2422 [details] [associations]
symbol:BA_2422 "cold shock protein CspA" species:198094
"Bacillus anthracis str. Ames" [GO:0003677 "DNA binding"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0009409 "response to cold"
evidence=ISS] InterPro:IPR002059 InterPro:IPR011129
InterPro:IPR012156 Pfam:PF00313 PIRSF:PIRSF002599 PRINTS:PR00050
SMART:SM00357 Prosite:PS00352 GO:GO:0005737 GO:GO:0006355
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
GO:GO:0006351 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 eggNOG:COG1278 HOGENOM:HOG000070674 KO:K03704
RefSeq:NP_844799.1 RefSeq:YP_019064.1 RefSeq:YP_028518.1
ProteinModelPortal:Q81QK2 SMR:Q81QK2 DNASU:1086343
EnsemblBacteria:EBBACT00000011610 EnsemblBacteria:EBBACT00000017774
EnsemblBacteria:EBBACT00000021660 GeneID:1086343 GeneID:2816216
GeneID:2851992 KEGG:ban:BA_2422 KEGG:bar:GBAA_2422 KEGG:bat:BAS2257
OMA:ASESVHI ProtClustDB:CLSK916624
BioCyc:BANT260799:GJAJ-2323-MONOMER
BioCyc:BANT261594:GJ7F-2403-MONOMER Uniprot:Q81QK2
Length = 67
Score = 140 (54.3 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 26/51 (50%), Positives = 36/51 (70%)
Query: 8 TGKVTWFDGAKGYGFIRPDDGGADLFVHQKSIKSDGYRTLYENQSVEFDVQ 58
TGKV WF+ KG+GFI + GG D+FVH +I DG+++L E Q V F+V+
Sbjct: 4 TGKVKWFNSEKGFGFIEVE-GGNDVFVHFSAITGDGFKSLDEGQEVSFEVE 53
>TIGR_CMR|BA_3594 [details] [associations]
symbol:BA_3594 "cold shock protein CspB" species:198094
"Bacillus anthracis str. Ames" [GO:0003677 "DNA binding"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0009409 "response to cold"
evidence=ISS] InterPro:IPR002059 InterPro:IPR011129
InterPro:IPR012156 Pfam:PF00313 PIRSF:PIRSF002599 PRINTS:PR00050
SMART:SM00357 Prosite:PS00352 GO:GO:0005737 GO:GO:0006355
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 KO:K03704 OMA:AHFRQIT HOGENOM:HOG000070673
HSSP:P41016 RefSeq:NP_845864.1 RefSeq:YP_020229.1
RefSeq:YP_029590.1 ProteinModelPortal:Q81YF5 SMR:Q81YF5
DNASU:1086356 EnsemblBacteria:EBBACT00000010475
EnsemblBacteria:EBBACT00000015696 EnsemblBacteria:EBBACT00000021214
GeneID:1086356 GeneID:2816334 GeneID:2852892 KEGG:ban:BA_3594
KEGG:bar:GBAA_3594 KEGG:bat:BAS3333 ProtClustDB:CLSK917095
BioCyc:BANT260799:GJAJ-3395-MONOMER
BioCyc:BANT261594:GJ7F-3504-MONOMER Uniprot:Q81YF5
Length = 66
Score = 139 (54.0 bits), Expect = 1.4e-09, P = 1.4e-09
Identities = 29/62 (46%), Positives = 41/62 (66%)
Query: 9 GKVTWFDGAKGYGFIRPDDGGADLFVHQKSIKSDGYRTLYENQSVEFDVQLEADGKYQAL 68
GKV WF+ KG+GFI + GG D+FVH +I+ +G++TL E Q V F+V+ G QA
Sbjct: 4 GKVKWFNSEKGFGFIEVE-GGEDVFVHFSAIQGEGFKTLEEGQEVTFEVEQGNRGP-QAT 61
Query: 69 DV 70
+V
Sbjct: 62 NV 63
>TIGR_CMR|GSU_1905 [details] [associations]
symbol:GSU_1905 "cold shock domain family protein"
species:243231 "Geobacter sulfurreducens PCA" [GO:0003677 "DNA
binding" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0009409 "response to cold"
evidence=ISS] InterPro:IPR002059 InterPro:IPR011129
InterPro:IPR012156 Pfam:PF00313 PIRSF:PIRSF002599 PRINTS:PR00050
SMART:SM00357 Prosite:PS00352 GO:GO:0005737 GO:GO:0006355
GO:GO:0003677 EMBL:AE017180 GenomeReviews:AE017180_GR
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 HOGENOM:HOG000070674 KO:K03704
RefSeq:NP_952954.1 ProteinModelPortal:Q74BX3 SMR:Q74BX3
GeneID:2688446 KEGG:gsu:GSU1905 PATRIC:22026675 OMA:FISRDNG
ProtClustDB:CLSK828634 BioCyc:GSUL243231:GH27-1948-MONOMER
Uniprot:Q74BX3
Length = 66
Score = 139 (54.0 bits), Expect = 1.4e-09, P = 1.4e-09
Identities = 25/49 (51%), Positives = 36/49 (73%)
Query: 9 GKVTWFDGAKGYGFIRPDDGGADLFVHQKSIKSDGYRTLYENQSVEFDV 57
G+V WF+ AKG+GFI D+G D+FVH +I+ DG+++L E + V FDV
Sbjct: 4 GRVKWFNDAKGFGFIEQDNG-EDVFVHFSAIQQDGFKSLAEGEQVSFDV 51
>UNIPROTKB|E1C9B8 [details] [associations]
symbol:E1C9B8 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313 PRINTS:PR00050
SMART:SM00357 GO:GO:0006355 GO:GO:0003677 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GeneTree:ENSGT00390000009256
EMBL:AADN02037767 EMBL:AADN02037762 EMBL:AADN02037763
EMBL:AADN02037764 EMBL:AADN02037765 EMBL:AADN02037766
IPI:IPI00588677 Ensembl:ENSGALT00000029277 OMA:EHAGIIV
ArrayExpress:E1C9B8 Uniprot:E1C9B8
Length = 295
Score = 143 (55.4 bits), Expect = 1.6e-09, P = 1.6e-09
Identities = 34/83 (40%), Positives = 50/83 (60%)
Query: 5 TRSTGKVTWFDGAKGYGFIRP-DDGGADLFVHQKSIKSDG---Y-RTLYENQSVEFDVQL 59
T+ G V WF+ GYGFI +D D+FVHQ +IK + Y R++ + ++VEFDV +
Sbjct: 80 TKVLGTVKWFNVRNGYGFINSRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDV-V 138
Query: 60 EADGKYQALDVTAPGGAPVHSSK 82
E + +A +VT P G PV S+
Sbjct: 139 EGEKGAEAANVTGPDGVPVEGSR 161
>UNIPROTKB|Q47VJ5 [details] [associations]
symbol:CPS_4529 "Cold-shock DNA-binding domain family
protein" species:167879 "Colwellia psychrerythraea 34H" [GO:0003677
"DNA binding" evidence=ISS] InterPro:IPR002059 InterPro:IPR011129
InterPro:IPR012156 Pfam:PF00313 PIRSF:PIRSF002599 PRINTS:PR00050
SMART:SM00357 GO:GO:0005737 GO:GO:0006355 GO:GO:0003677
EMBL:CP000083 GenomeReviews:CP000083_GR Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 eggNOG:COG1278
HOGENOM:HOG000070674 KO:K03704 RefSeq:YP_271177.1
ProteinModelPortal:Q47VJ5 SMR:Q47VJ5 GeneID:3518971
KEGG:cps:CPS_4529 PATRIC:21471883 OMA:ETEGQDI
ProtClustDB:CLSK757227 BioCyc:CPSY167879:GI48-4538-MONOMER
Uniprot:Q47VJ5
Length = 68
Score = 138 (53.6 bits), Expect = 1.8e-09, P = 1.8e-09
Identities = 30/69 (43%), Positives = 43/69 (62%)
Query: 4 LTRSTGKVTWFDGAKGYGFIRPDDGGADLFVHQKSIKSDGYRTLYENQSVEFDVQLEADG 63
++ +TG V WF+ AKG+GFI ++G D+F H +I DG++TL E Q VEF V G
Sbjct: 1 MSTTTGTVKWFNEAKGFGFIEQENG-PDVFAHFNAIVGDGFKTLAEGQKVEFTVTDGQKG 59
Query: 64 KYQALDVTA 72
QA ++ A
Sbjct: 60 P-QAENIVA 67
>TIGR_CMR|CPS_4529 [details] [associations]
symbol:CPS_4529 "cold shock protein cspV" species:167879
"Colwellia psychrerythraea 34H" [GO:0003677 "DNA binding"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0009409 "response to cold"
evidence=ISS] InterPro:IPR002059 InterPro:IPR011129
InterPro:IPR012156 Pfam:PF00313 PIRSF:PIRSF002599 PRINTS:PR00050
SMART:SM00357 GO:GO:0005737 GO:GO:0006355 GO:GO:0003677
EMBL:CP000083 GenomeReviews:CP000083_GR Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 eggNOG:COG1278
HOGENOM:HOG000070674 KO:K03704 RefSeq:YP_271177.1
ProteinModelPortal:Q47VJ5 SMR:Q47VJ5 GeneID:3518971
KEGG:cps:CPS_4529 PATRIC:21471883 OMA:ETEGQDI
ProtClustDB:CLSK757227 BioCyc:CPSY167879:GI48-4538-MONOMER
Uniprot:Q47VJ5
Length = 68
Score = 138 (53.6 bits), Expect = 1.8e-09, P = 1.8e-09
Identities = 30/69 (43%), Positives = 43/69 (62%)
Query: 4 LTRSTGKVTWFDGAKGYGFIRPDDGGADLFVHQKSIKSDGYRTLYENQSVEFDVQLEADG 63
++ +TG V WF+ AKG+GFI ++G D+F H +I DG++TL E Q VEF V G
Sbjct: 1 MSTTTGTVKWFNEAKGFGFIEQENG-PDVFAHFNAIVGDGFKTLAEGQKVEFTVTDGQKG 59
Query: 64 KYQALDVTA 72
QA ++ A
Sbjct: 60 P-QAENIVA 67
>UNIPROTKB|F1RWB7 [details] [associations]
symbol:F1RWB7 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071204 "histone pre-mRNA 3'end processing complex"
evidence=IEA] [GO:0070937 "CRD-mediated mRNA stability complex"
evidence=IEA] [GO:0070934 "CRD-mediated mRNA stabilization"
evidence=IEA] [GO:0051154 "negative regulation of striated muscle
cell differentiation" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0005689 "U12-type spliceosomal complex"
evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IEA] [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=IEA] InterPro:IPR002059
InterPro:IPR011129 Pfam:PF00313 PRINTS:PR00050 SMART:SM00357
Prosite:PS00352 GO:GO:0006355 GO:GO:0003677 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR019844
GeneTree:ENSGT00390000009256 EMBL:CU693419
Ensembl:ENSSSCT00000009700 OMA:QPREDSK Uniprot:F1RWB7
Length = 302
Score = 142 (55.0 bits), Expect = 2.2e-09, P = 2.2e-09
Identities = 33/78 (42%), Positives = 46/78 (58%)
Query: 9 GKVTWFDGAKGYGFIRPDDGGADLFVHQKSIKSDG---Y-RTLYENQSVEFDVQLEADGK 64
G V WF+ GYGFI +D D+FVHQ +IK + Y R++ + + VEFDV +E +
Sbjct: 65 GTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGEIVEFDV-VEGEES 123
Query: 65 YQALDVTAPGGAPVHSSK 82
+A + T PGG V SK
Sbjct: 124 AEAANFTGPGGVGVQGSK 141
>UNIPROTKB|J9NYZ2 [details] [associations]
symbol:J9NYZ2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313
PRINTS:PR00050 SMART:SM00357 Prosite:PS00352 GO:GO:0006355
GO:GO:0003677 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 GeneTree:ENSGT00390000009256 EMBL:AAEX03026423
OMA:GGPQDQR Ensembl:ENSCAFT00000048266 Uniprot:J9NYZ2
Length = 316
Score = 142 (55.0 bits), Expect = 2.4e-09, P = 2.4e-09
Identities = 33/81 (40%), Positives = 48/81 (59%)
Query: 6 RSTGKVTWFDGAKGYGFIRPDDGGADLFVHQKSIKSDG---Y-RTLYENQSVEFDVQLEA 61
R G V WF+ GYGFI D D+FVHQ +I + Y R++ + ++VEFDV ++
Sbjct: 68 RVRGSVKWFNVKNGYGFISRHDTQEDVFVHQTAITRNNPHKYQRSVGDGETVEFDV-VQG 126
Query: 62 DGKYQALDVTAPGGAPVHSSK 82
+ +A +VT P GAPV S+
Sbjct: 127 ERGTEAANVTGPAGAPVQGSR 147
>UNIPROTKB|Q9KMY2 [details] [associations]
symbol:VC_A0184 "Cold shock DNA-binding domain protein"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0009409 "response to cold" evidence=ISS]
InterPro:IPR002059 InterPro:IPR011129 InterPro:IPR012156
Pfam:PF00313 PIRSF:PIRSF002599 PRINTS:PR00050 SMART:SM00357
Prosite:PS00352 GO:GO:0005737 GO:GO:0006355 GO:GO:0003677
GO:GO:0009409 EMBL:AE003853 GenomeReviews:AE003853_GR
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 KO:K03704 HSSP:P41016 PIR:A82489
RefSeq:NP_232584.1 ProteinModelPortal:Q9KMY2 SMR:Q9KMY2
DNASU:2611851 GeneID:2611851 KEGG:vch:VCA0184 PATRIC:20084941
OMA:SFEATQD ProtClustDB:CLSK2392342 Uniprot:Q9KMY2
Length = 69
Score = 136 (52.9 bits), Expect = 2.9e-09, P = 2.9e-09
Identities = 26/51 (50%), Positives = 35/51 (68%)
Query: 5 TRSTGKVTWFDGAKGYGFIRPDDGGADLFVHQKSIKSDGYRTLYENQSVEF 55
T TG V WF+ KG+GFI+ ++G D+F H +I+ DG+RTL E Q VEF
Sbjct: 3 TPVTGTVKWFNETKGFGFIKQENG-PDVFAHFSAIQGDGFRTLAEGQKVEF 52
>TIGR_CMR|VC_A0184 [details] [associations]
symbol:VC_A0184 "cold shock DNA-binding domain protein"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0006355
"regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0009409 "response to cold" evidence=ISS] InterPro:IPR002059
InterPro:IPR011129 InterPro:IPR012156 Pfam:PF00313
PIRSF:PIRSF002599 PRINTS:PR00050 SMART:SM00357 Prosite:PS00352
GO:GO:0005737 GO:GO:0006355 GO:GO:0003677 GO:GO:0009409
EMBL:AE003853 GenomeReviews:AE003853_GR Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR019844 KO:K03704
HSSP:P41016 PIR:A82489 RefSeq:NP_232584.1 ProteinModelPortal:Q9KMY2
SMR:Q9KMY2 DNASU:2611851 GeneID:2611851 KEGG:vch:VCA0184
PATRIC:20084941 OMA:SFEATQD ProtClustDB:CLSK2392342 Uniprot:Q9KMY2
Length = 69
Score = 136 (52.9 bits), Expect = 2.9e-09, P = 2.9e-09
Identities = 26/51 (50%), Positives = 35/51 (68%)
Query: 5 TRSTGKVTWFDGAKGYGFIRPDDGGADLFVHQKSIKSDGYRTLYENQSVEF 55
T TG V WF+ KG+GFI+ ++G D+F H +I+ DG+RTL E Q VEF
Sbjct: 3 TPVTGTVKWFNETKGFGFIKQENG-PDVFAHFSAIQGDGFRTLAEGQKVEF 52
>UNIPROTKB|F1M0E9 [details] [associations]
symbol:F1M0E9 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313
PRINTS:PR00050 SMART:SM00357 Prosite:PS00352 GO:GO:0006355
GO:GO:0003677 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 GeneTree:ENSGT00390000009256 EMBL:AC118318
IPI:IPI00781417 Ensembl:ENSRNOT00000011205 Uniprot:F1M0E9
Length = 311
Score = 141 (54.7 bits), Expect = 3.0e-09, P = 3.0e-09
Identities = 35/82 (42%), Positives = 50/82 (60%)
Query: 5 TRSTGKVTWFDGAKGYGFIRPDDGGADLFVHQKSIKSDG---Y-RTLYENQSVEFDVQLE 60
T+ G V F+ GYGFI +D D+FVHQ +IK + Y R++ + ++VEFDV +E
Sbjct: 46 TKVLGTVK-FNVRNGYGFINRNDTKEDVFVHQTAIKKNNPSKYLRSVGDGETVEFDV-VE 103
Query: 61 ADGKYQALDVTAPGGAPVHSSK 82
+ +A +VT PGG PV SK
Sbjct: 104 GEKGAEAANVTGPGGVPVQGSK 125
>TIGR_CMR|BA_1629 [details] [associations]
symbol:BA_1629 "cold shock protein CspB" species:198094
"Bacillus anthracis str. Ames" [GO:0003677 "DNA binding"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0009409 "response to cold"
evidence=ISS] InterPro:IPR002059 InterPro:IPR011129
InterPro:IPR012156 Pfam:PF00313 PIRSF:PIRSF002599 PRINTS:PR00050
SMART:SM00357 Prosite:PS00352 GO:GO:0005737 GO:GO:0006355
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 HOGENOM:HOG000070674 KO:K03704 OMA:ANVFRRN
HSSP:P41016 RefSeq:NP_844076.1 RefSeq:YP_018263.1
RefSeq:YP_027779.1 ProteinModelPortal:Q81SL9 SMR:Q81SL9
DNASU:1086132 EnsemblBacteria:EBBACT00000009010
EnsemblBacteria:EBBACT00000014540 EnsemblBacteria:EBBACT00000022883
GeneID:1086132 GeneID:2816052 GeneID:2848926 KEGG:ban:BA_1629
KEGG:bar:GBAA_1629 KEGG:bat:BAS1512 ProtClustDB:CLSK916304
BioCyc:BANT260799:GJAJ-1584-MONOMER
BioCyc:BANT261594:GJ7F-1650-MONOMER Uniprot:Q81SL9
Length = 65
Score = 134 (52.2 bits), Expect = 4.7e-09, P = 4.7e-09
Identities = 28/62 (45%), Positives = 39/62 (62%)
Query: 9 GKVTWFDGAKGYGFIRPDDGGADLFVHQKSIKSDGYRTLYENQSVEFDVQLEADGKYQAL 68
GKV WF+ KG+GFI + G D+FVH +I+ +GY+ L E Q V FD+ E + QA
Sbjct: 3 GKVKWFNNEKGFGFIEME-GADDVFVHFSAIQGEGYKALEEGQEVSFDIT-EGNRGPQAA 60
Query: 69 DV 70
+V
Sbjct: 61 NV 62
>UNIPROTKB|G3X6E4 [details] [associations]
symbol:G3X6E4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313 PRINTS:PR00050
SMART:SM00357 Prosite:PS00352 GO:GO:0006355 GO:GO:0003677
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 GeneTree:ENSGT00390000009256 OMA:ERESDWQ
EMBL:DAAA02073461 Ensembl:ENSBTAT00000005429 Uniprot:G3X6E4
Length = 245
Score = 136 (52.9 bits), Expect = 5.1e-09, P = 5.1e-09
Identities = 32/80 (40%), Positives = 45/80 (56%)
Query: 6 RSTGKVTWFDGAKGYGFIRPDDGGADLFVHQKSIKSDG---YR-TLYENQSVEFDVQLEA 61
R G V WF KGYGFIR D D+FVH +I + YR ++ + ++VEFDV ++
Sbjct: 43 RVLGTVVWFKDKKGYGFIRRHDTQEDVFVHHTAITGETPCKYRGSVDDGETVEFDV-VQG 101
Query: 62 DGKYQALDVTAPGGAPVHSS 81
+ +A VT P G P+ S
Sbjct: 102 ERGTEAAKVTGPAGVPLKGS 121
>UNIPROTKB|G3N0T3 [details] [associations]
symbol:G3N0T3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313 PRINTS:PR00050
SMART:SM00357 Prosite:PS00352 GO:GO:0006355 GO:GO:0003677
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 GeneTree:ENSGT00390000009256 EMBL:DAAA02073368
Ensembl:ENSBTAT00000064453 OMA:GGPQDQR Uniprot:G3N0T3
Length = 239
Score = 135 (52.6 bits), Expect = 6.1e-09, P = 6.1e-09
Identities = 32/81 (39%), Positives = 45/81 (55%)
Query: 6 RSTGKVTWFDGAKGYGFIRPDDGGADLFVHQKSIKSDG---YR-TLYENQSVEFDVQLEA 61
R G V WF KGYGFI D D+FVH +I YR ++ + + VEFDV ++
Sbjct: 24 RVLGTVVWFKEKKGYGFISRQDTQEDVFVHHTAITGKNPCTYRGSVDDGEMVEFDV-VQG 82
Query: 62 DGKYQALDVTAPGGAPVHSSK 82
+ +A +VT P GAP+ S+
Sbjct: 83 EWGTEAANVTGPAGAPLKGSR 103
>WB|WBGene00000474 [details] [associations]
symbol:cey-3 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0043021 "ribonucleoprotein complex
binding" evidence=IDA] [GO:0030529 "ribonucleoprotein complex"
evidence=IDA] InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313
PRINTS:PR00050 SMART:SM00357 Prosite:PS00352 GO:GO:0006355
GO:GO:0003677 GO:GO:0030529 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 GO:GO:0043021 InterPro:IPR019844 eggNOG:COG1278
GeneTree:ENSGT00390000009256 HSSP:P41016 EMBL:FO081398
HOGENOM:HOG000016644 PIR:T29322 RefSeq:NP_491631.1
ProteinModelPortal:P91398 SMR:P91398 STRING:P91398 PaxDb:P91398
EnsemblMetazoa:M01E11.5.1 EnsemblMetazoa:M01E11.5.2 GeneID:172211
KEGG:cel:CELE_M01E11.5 UCSC:M01E11.5.1 CTD:172211 WormBase:M01E11.5
InParanoid:P91398 OMA:FDSKETE NextBio:874515 Uniprot:P91398
Length = 265
Score = 135 (52.6 bits), Expect = 9.0e-09, P = 9.0e-09
Identities = 37/81 (45%), Positives = 46/81 (56%)
Query: 9 GKVTWFDGAKGYGFIRPDDGGADLFVHQKSI-KSDG---Y-RTLYENQSVEFDVQLEADG 63
GKV W+ + YGFI DG D+FVHQ +I KSD Y RTL + + V FD+ DG
Sbjct: 66 GKVKWYSVLRRYGFISRSDGEKDVFVHQTAISKSDTEKFYLRTLADEEEVLFDL---VDG 122
Query: 64 KY--QALDVTAPGGAPVHSSK 82
K +A +VT P G V SK
Sbjct: 123 KNGPEAANVTGPAGVNVSGSK 143
>UNIPROTKB|F1NMZ8 [details] [associations]
symbol:YBX1 "Nuclease-sensitive element-binding protein 1"
species:9031 "Gallus gallus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0001701 "in utero embryonic development" evidence=IEA]
[GO:0003697 "single-stranded DNA binding" evidence=IEA] [GO:0005689
"U12-type spliceosomal complex" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0051154 "negative
regulation of striated muscle cell differentiation" evidence=IEA]
[GO:0070934 "CRD-mediated mRNA stabilization" evidence=IEA]
[GO:0070937 "CRD-mediated mRNA stability complex" evidence=IEA]
[GO:0071204 "histone pre-mRNA 3'end processing complex"
evidence=IEA] InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313
PRINTS:PR00050 SMART:SM00357 Prosite:PS00352 GO:GO:0000122
GO:GO:0003697 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
GO:GO:0010494 InterPro:IPR019844 GeneTree:ENSGT00390000009256
GO:GO:0005689 GO:GO:0070937 GO:GO:0070934 GO:GO:0071204
GO:GO:0051154 OMA:VEGADNQ EMBL:AADN02073477 IPI:IPI00683264
Ensembl:ENSGALT00000039185 ArrayExpress:F1NMZ8 Uniprot:F1NMZ8
Length = 288
Score = 135 (52.6 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 31/68 (45%), Positives = 44/68 (64%)
Query: 19 GYGFIRPDDGGADLFVHQKSIKSDG---Y-RTLYENQSVEFDVQLEADGKYQALDVTAPG 74
GYGFI +D D+FVHQ +IK + Y R++ + ++VEFDV +E + +A +VT PG
Sbjct: 14 GYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDV-VEGEKGAEAANVTGPG 72
Query: 75 GAPVHSSK 82
G PV SK
Sbjct: 73 GVPVQGSK 80
>UNIPROTKB|Q3T0Q6 [details] [associations]
symbol:CNBP "Cellular nucleic acid-binding protein"
species:9913 "Bos taurus" [GO:0005783 "endoplasmic reticulum"
evidence=IEA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0008284
"positive regulation of cell proliferation" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] InterPro:IPR001878 Pfam:PF00098
PROSITE:PS50158 SMART:SM00343 GO:GO:0005783 GO:GO:0005829
GO:GO:0005634 GO:GO:0046872 GO:GO:0003677 GO:GO:0008284
GO:GO:0008270 GO:GO:0045944 GO:GO:0006351 eggNOG:COG5082
Gene3D:4.10.60.10 SUPFAM:SSF57756 HOGENOM:HOG000186262 KO:K09250
OMA:FQFMSSS EMBL:BC102298 IPI:IPI00697831 RefSeq:NP_001029396.1
UniGene:Bt.9541 ProteinModelPortal:Q3T0Q6 STRING:Q3T0Q6
PRIDE:Q3T0Q6 Ensembl:ENSBTAT00000016130 GeneID:504831
KEGG:bta:504831 CTD:7555 GeneTree:ENSGT00510000047065
HOVERGEN:HBG000397 InParanoid:Q3T0Q6 OrthoDB:EOG45HRZN
NextBio:20866851 Uniprot:Q3T0Q6
Length = 170
Score = 130 (50.8 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 30/97 (30%), Positives = 40/97 (41%)
Query: 168 HFARDCP-----------RQQXXXXXXXXXXXXCFKCGGYGHLARDCITXXXXXXXXXXX 216
H+AR+CP R + C++CG GHLA+DC
Sbjct: 14 HWARECPTGGGRGRGMRSRGRGFQFVSSSLPDICYRCGESGHLAKDC------DLQEDAC 67
Query: 217 XXXXXXXHLARDCXXXXXXXXXSCFNCGKPGHFAREC 253
H+A+DC C+NCGKPGH AR+C
Sbjct: 68 YNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDC 104
Score = 113 (44.8 bits), Expect = 7.8e-07, P = 7.8e-07
Identities = 28/89 (31%), Positives = 38/89 (42%)
Query: 168 HFARDCPRQQXXXXXXXXXXXXCFKCGGYGHLARDCITXXXXXXXXXXXXXXXXXXHLAR 227
H A+DC Q+ C+ CG GH+A+DC HLAR
Sbjct: 55 HLAKDCDLQEDA----------CYNCGRGGHIAKDC--KEPKREREQCCYNCGKPGHLAR 102
Query: 228 DCXXXXXXXXXSCFNCGKPGHFARECTKV 256
DC C++CG+ GH ++CTKV
Sbjct: 103 DCDHADEQ---KCYSCGEFGHIQKDCTKV 128
Score = 99 (39.9 bits), Expect = 0.00033, P = 0.00033
Identities = 20/65 (30%), Positives = 29/65 (44%)
Query: 190 CFKCGGYGHLARDCITXXXXXXXXXXXXXXXXXXHLARDCXXXXXXXXXSCFNCGKPGHF 249
C+ CG +GH+ +DC H+A +C +C+ CG+ GH
Sbjct: 112 CYSCGEFGHIQKDC--------TKVKCYRCGETGHVAINCSKTSEV---NCYRCGESGHL 160
Query: 250 ARECT 254
ARECT
Sbjct: 161 ARECT 165
>TIGR_CMR|BA_1135 [details] [associations]
symbol:BA_1135 "cold shock protein CspA" species:198094
"Bacillus anthracis str. Ames" [GO:0003677 "DNA binding"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0009409 "response to cold"
evidence=ISS] InterPro:IPR002059 InterPro:IPR011129
InterPro:IPR012156 Pfam:PF00313 PIRSF:PIRSF002599 PRINTS:PR00050
SMART:SM00357 Prosite:PS00352 GO:GO:0005737 GO:GO:0006355
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
GO:GO:0006351 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 eggNOG:COG1278 RefSeq:NP_843619.1
RefSeq:YP_017753.1 RefSeq:YP_027326.1 ProteinModelPortal:Q81TW8
SMR:Q81TW8 DNASU:1086206 EnsemblBacteria:EBBACT00000011078
EnsemblBacteria:EBBACT00000018522 EnsemblBacteria:EBBACT00000023981
GeneID:1086206 GeneID:2816671 GeneID:2852366 KEGG:ban:BA_1135
KEGG:bar:GBAA_1135 KEGG:bat:BAS1054 HOGENOM:HOG000070674 KO:K03704
OMA:LNIKGHY ProtClustDB:CLSK916107
BioCyc:BANT260799:GJAJ-1130-MONOMER
BioCyc:BANT261594:GJ7F-1181-MONOMER Uniprot:Q81TW8
Length = 67
Score = 130 (50.8 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 27/63 (42%), Positives = 42/63 (66%)
Query: 8 TGKVTWFDGAKGYGFIRPDDGGADLFVHQKSIKSDGYRTLYENQSVEFDVQLEADGKYQA 67
TG+V WF+ KG+GFI G D+FVH +I++DG+++L E Q V F+++ E + QA
Sbjct: 4 TGQVKWFNNEKGFGFIEVP-GENDVFVHFSAIETDGFKSLEEGQKVSFEIE-EGNRGPQA 61
Query: 68 LDV 70
+V
Sbjct: 62 KNV 64
>UNIPROTKB|F1N8C2 [details] [associations]
symbol:CNBP "Cellular nucleic acid-binding protein"
species:9031 "Gallus gallus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005783 "endoplasmic
reticulum" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0008284 "positive regulation of cell proliferation"
evidence=IEA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] InterPro:IPR001878
Pfam:PF00098 PROSITE:PS50158 SMART:SM00343 GO:GO:0005783
GO:GO:0005829 GO:GO:0005634 GO:GO:0046872 GO:GO:0008284
GO:GO:0008270 GO:GO:0045944 GO:GO:0003676 Gene3D:4.10.60.10
SUPFAM:SSF57756 OMA:FQFMSSS GeneTree:ENSGT00510000047065
IPI:IPI00582111 EMBL:AADN02013931 Ensembl:ENSGALT00000036274
ArrayExpress:F1N8C2 Uniprot:F1N8C2
Length = 171
Score = 129 (50.5 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 24/64 (37%), Positives = 31/64 (48%)
Query: 190 CFKCGGYGHLARDCITXXXXXXXXXXXXXXXXXXHLARDCXXXXXXXXXSCFNCGKPGHF 249
C++CG GHLA+DC H+A+DC C+NCGKPGH
Sbjct: 48 CYRCGESGHLAKDC------DLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHL 101
Query: 250 AREC 253
AR+C
Sbjct: 102 ARDC 105
Score = 113 (44.8 bits), Expect = 7.8e-07, P = 7.8e-07
Identities = 28/89 (31%), Positives = 38/89 (42%)
Query: 168 HFARDCPRQQXXXXXXXXXXXXCFKCGGYGHLARDCITXXXXXXXXXXXXXXXXXXHLAR 227
H A+DC Q+ C+ CG GH+A+DC HLAR
Sbjct: 56 HLAKDCDLQEDA----------CYNCGRGGHIAKDC--KEPKREREQCCYNCGKPGHLAR 103
Query: 228 DCXXXXXXXXXSCFNCGKPGHFARECTKV 256
DC C++CG+ GH ++CTKV
Sbjct: 104 DCDHADEQ---KCYSCGEFGHIQKDCTKV 129
Score = 99 (39.9 bits), Expect = 0.00033, P = 0.00033
Identities = 20/65 (30%), Positives = 29/65 (44%)
Query: 190 CFKCGGYGHLARDCITXXXXXXXXXXXXXXXXXXHLARDCXXXXXXXXXSCFNCGKPGHF 249
C+ CG +GH+ +DC H+A +C +C+ CG+ GH
Sbjct: 113 CYSCGEFGHIQKDC--------TKVKCYRCGETGHVAINCSKTSEV---NCYRCGESGHL 161
Query: 250 ARECT 254
ARECT
Sbjct: 162 ARECT 166
>UNIPROTKB|F1NI84 [details] [associations]
symbol:CNBP "Cellular nucleic acid-binding protein"
species:9031 "Gallus gallus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005783 "endoplasmic
reticulum" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0008284 "positive regulation of cell proliferation"
evidence=IEA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] InterPro:IPR001878
Pfam:PF00098 PROSITE:PS50158 SMART:SM00343 GO:GO:0005783
GO:GO:0005829 GO:GO:0005634 GO:GO:0046872 GO:GO:0008284
GO:GO:0008270 GO:GO:0045944 GO:GO:0003676 Gene3D:4.10.60.10
SUPFAM:SSF57756 GeneTree:ENSGT00510000047065 EMBL:AADN02013931
IPI:IPI00819060 Ensembl:ENSGALT00000008010 ArrayExpress:F1NI84
Uniprot:F1NI84
Length = 105
Score = 129 (50.5 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 24/64 (37%), Positives = 31/64 (48%)
Query: 190 CFKCGGYGHLARDCITXXXXXXXXXXXXXXXXXXHLARDCXXXXXXXXXSCFNCGKPGHF 249
C++CG GHLA+DC H+A+DC C+NCGKPGH
Sbjct: 9 CYRCGESGHLAKDC------DLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHL 62
Query: 250 AREC 253
AR+C
Sbjct: 63 ARDC 66
Score = 113 (44.8 bits), Expect = 7.8e-07, P = 7.8e-07
Identities = 28/89 (31%), Positives = 38/89 (42%)
Query: 168 HFARDCPRQQXXXXXXXXXXXXCFKCGGYGHLARDCITXXXXXXXXXXXXXXXXXXHLAR 227
H A+DC Q+ C+ CG GH+A+DC HLAR
Sbjct: 17 HLAKDCDLQEDA----------CYNCGRGGHIAKDC--KEPKREREQCCYNCGKPGHLAR 64
Query: 228 DCXXXXXXXXXSCFNCGKPGHFARECTKV 256
DC C++CG+ GH ++CTKV
Sbjct: 65 DCDHADEQ---KCYSCGEFGHIQKDCTKV 90
Score = 87 (35.7 bits), Expect = 0.00045, P = 0.00045
Identities = 20/64 (31%), Positives = 25/64 (39%)
Query: 190 CFKCGGYGHLARDCITXXXXXXXXXXXXXXXXXXHLARDCXXXXXXXXXSCFNCGKPGHF 249
C+ CG GHLARDC H+ +DC C+ CG+ GH
Sbjct: 53 CYNCGKPGHLARDC-----DHADEQKCYSCGEFGHIQKDCTKV------KCYRCGETGHV 101
Query: 250 AREC 253
A C
Sbjct: 102 AINC 105
>TIGR_CMR|CPS_0737 [details] [associations]
symbol:CPS_0737 "cold-shock DNA-binding domain family
protein" species:167879 "Colwellia psychrerythraea 34H" [GO:0006355
"regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0009409 "response to cold" evidence=ISS] InterPro:IPR002059
InterPro:IPR011129 InterPro:IPR012156 Pfam:PF00313
PIRSF:PIRSF002599 PRINTS:PR00050 SMART:SM00357 Prosite:PS00352
GO:GO:0005737 GO:GO:0006355 GO:GO:0003677 EMBL:CP000083
GenomeReviews:CP000083_GR Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 InterPro:IPR019844 eggNOG:COG1278
HOGENOM:HOG000070674 KO:K03704 RefSeq:YP_267487.1
ProteinModelPortal:Q488M7 SMR:Q488M7 GeneID:3518930
KEGG:cps:CPS_0737 PATRIC:21464787 OMA:PQAENVE
ProtClustDB:CLSK742412 BioCyc:CPSY167879:GI48-824-MONOMER
Uniprot:Q488M7
Length = 69
Score = 129 (50.5 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 29/65 (44%), Positives = 42/65 (64%)
Query: 8 TGKVTWFDGAKGYGFIRPDDGGADLFVHQKSIKSDGYRTLYENQSVEFDVQLEADGKYQA 67
TGKV +F+ KG+GFI ++G D+FVH +I DG+RTL + Q+V F V+ G +A
Sbjct: 6 TGKVKFFNETKGFGFIEQENG-PDVFVHFSAISGDGFRTLADGQAVTFTVKQGQKGP-EA 63
Query: 68 LDVTA 72
+V A
Sbjct: 64 ENVLA 68
>ZFIN|ZDB-GENE-030131-5045 [details] [associations]
symbol:cnbpa "CCHC-type zinc finger, nucleic acid
binding protein a" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0060322 "head development" evidence=IMP]
[GO:0014029 "neural crest formation" evidence=IMP] [GO:0014036
"neural crest cell fate specification" evidence=IMP] [GO:0051216
"cartilage development" evidence=IMP] [GO:0003697 "single-stranded
DNA binding" evidence=IDA] [GO:0003723 "RNA binding" evidence=IDA]
[GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR001878
Pfam:PF00098 PROSITE:PS50158 SMART:SM00343
ZFIN:ZDB-GENE-030131-5045 GO:GO:0046872 GO:GO:0008270 GO:GO:0003723
GO:GO:0003697 GO:GO:0051216 Gene3D:4.10.60.10 SUPFAM:SSF57756
HOGENOM:HOG000186262 HOVERGEN:HBG000397 GO:GO:0060322 GO:GO:0014036
InterPro:IPR025836 Pfam:PF14392 EMBL:AY228240 IPI:IPI00481422
UniGene:Dr.31379 STRING:Q801Z9 InParanoid:Q801Z9
ArrayExpress:Q801Z9 Uniprot:Q801Z9
Length = 163
Score = 127 (49.8 bits), Expect = 2.6e-08, P = 2.6e-08
Identities = 26/88 (29%), Positives = 37/88 (42%)
Query: 168 HFARDCPR--QQXXXXXXXXXXXXCFKCGGYGHLARDCITXXXXXXXXXXXXXXXXXXHL 225
H+ ++CP + C++CG GH+ARDC H+
Sbjct: 16 HWIKNCPNAGRGRGRGRGRGKDLFCYRCGEQGHIARDC------EQTEDACYNCHRSGHI 69
Query: 226 ARDCXXXXXXXXXSCFNCGKPGHFAREC 253
+RDC C+NCGK GH AR+C
Sbjct: 70 SRDCKEPKKEREQCCYNCGKAGHVARDC 97
Score = 97 (39.2 bits), Expect = 0.00058, P = 0.00058
Identities = 26/89 (29%), Positives = 35/89 (39%)
Query: 168 HFARDCPRQQXXXXXXXXXXXXCFKCGGYGHLARDCITXXXXXXXXXXXXXXXXXXHLAR 227
H ARDC + + C+ C GH++RDC H+AR
Sbjct: 48 HIARDCEQTEDA----------CYNCHRSGHISRDC--KEPKKEREQCCYNCGKAGHVAR 95
Query: 228 DCXXXXXXXXXSCFNCGKPGHFARECTKV 256
DC C++CG GHF + C KV
Sbjct: 96 DCDHANEQ---KCYSCGGFGHFQKLCDKV 121
Score = 95 (38.5 bits), Expect = 3.0e-05, Sum P(2) = 3.0e-05
Identities = 20/65 (30%), Positives = 28/65 (43%)
Query: 190 CFKCGGYGHLARDCITXXXXXXXXXXXXXXXXXXHLARDCXXXXXXXXXSCFNCGKPGHF 249
C+ CGG+GH + C H+A C +C+NCGK GH
Sbjct: 105 CYSCGGFGHFQKLC--------DKVKCYRCGEIGHVAVQCSKATEV---NCYNCGKTGHL 153
Query: 250 ARECT 254
AR+C+
Sbjct: 154 ARDCS 158
Score = 38 (18.4 bits), Expect = 3.0e-05, Sum P(2) = 3.0e-05
Identities = 6/7 (85%), Positives = 7/7 (100%)
Query: 138 GHVAREC 144
GHVAR+C
Sbjct: 91 GHVARDC 97
>ASPGD|ASPL0000028407 [details] [associations]
symbol:AN5111 species:162425 "Emericella nidulans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0000747 "conjugation with
cellular fusion" evidence=IEA] [GO:0031137 "regulation of
conjugation with cellular fusion" evidence=IEA] InterPro:IPR001878
Pfam:PF00098 PROSITE:PS50158 SMART:SM00343 GO:GO:0046872
GO:GO:0008270 GO:GO:0003676 EMBL:BN001305 Gene3D:4.10.60.10
SUPFAM:SSF57756 OMA:FQFMSSS EnsemblFungi:CADANIAT00003095
Uniprot:C8VEX3
Length = 171
Score = 125 (49.1 bits), Expect = 4.2e-08, P = 4.2e-08
Identities = 35/126 (27%), Positives = 46/126 (36%)
Query: 136 GVGHVARECTXXXXXXXXXXXXXXXXXXXDPEHFARDCPRQQXXXXXXXXXXXXCFKCGG 195
G GHV+RECT H +R+CP Q C+KCG
Sbjct: 34 GQGHVSRECTVAPKEKSCYRCGAVG-------HISRECP--QAGENERPAGGQECYKCGR 84
Query: 196 YGHLARDCITXXXXXXXXXXXXXXXXXX--------HLARDCXXXXXXXXXSCFNCGKPG 247
GH+AR+C H+ARDC C+NCG+ G
Sbjct: 85 VGHIARNCSQGGSYGGGFGGGYGGRQQTCYSCGGFGHMARDCTQGQ-----KCYNCGETG 139
Query: 248 HFAREC 253
H +R+C
Sbjct: 140 HVSRDC 145
Score = 110 (43.8 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 25/92 (27%), Positives = 38/92 (41%)
Query: 168 HFARDCPRQQXXXXXXXXXXXXCFKCGGYGHLARDCITXXXXXXXXXXXXXXXXXXHLAR 227
H ARDCP++ C+ CGG GH++R+C H++R
Sbjct: 16 HQARDCPKK---------GTPTCYNCGGQGHVSRECTVAPKEKSCYRCGAVG----HISR 62
Query: 228 DCXXXXX----XXXXSCFNCGKPGHFARECTK 255
+C C+ CG+ GH AR C++
Sbjct: 63 ECPQAGENERPAGGQECYKCGRVGHIARNCSQ 94
Score = 102 (41.0 bits), Expect = 9.9e-05, P = 9.9e-05
Identities = 20/64 (31%), Positives = 27/64 (42%)
Query: 190 CFKCGGYGHLARDCITXXXXXXXXXXXXXXXXXXHLARDCXXXXXXXXXSCFNCGKPGHF 249
C+ CGG+GH+ARDC H++RDC C+ C +PGH
Sbjct: 113 CYSCGGFGHMARDC-------TQGQKCYNCGETGHVSRDCPTEAKGERV-CYQCKQPGHI 164
Query: 250 AREC 253
C
Sbjct: 165 QSAC 168
>UNIPROTKB|F1S319 [details] [associations]
symbol:F1S319 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313 PRINTS:PR00050
SMART:SM00357 GO:GO:0006355 GO:GO:0003677 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GeneTree:ENSGT00390000009256
EMBL:CU914460 Ensembl:ENSSSCT00000016681 Uniprot:F1S319
Length = 238
Score = 127 (49.8 bits), Expect = 5.0e-08, P = 5.0e-08
Identities = 31/82 (37%), Positives = 47/82 (57%)
Query: 5 TRSTGKVTWFDGAKGYGFIRPDDGGADLFVHQKSIKSDGYR----TLYENQSVEFDVQLE 60
T+ G V W GYGFI +D D+FV+Q +IK++ R ++ + ++ EFDV +E
Sbjct: 41 TKVLGTVKWLSVRNGYGFINGNDTKEDVFVYQTAIKNNNPRKYLHSIGDGETAEFDV-VE 99
Query: 61 ADGKYQALDVTAPGGAPVHSSK 82
+ +A +VT PGG V SK
Sbjct: 100 GEKGAEAANVTGPGGV-VQGSK 120
>TAIR|locus:2078526 [details] [associations]
symbol:AT3G42860 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=RCA] [GO:0009640 "photomorphogenesis"
evidence=RCA] [GO:0010212 "response to ionizing radiation"
evidence=RCA] [GO:0010388 "cullin deneddylation" evidence=RCA]
[GO:0016567 "protein ubiquitination" evidence=RCA] [GO:0016571
"histone methylation" evidence=RCA] [GO:0016579 "protein
deubiquitination" evidence=RCA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=RCA] InterPro:IPR001878
InterPro:IPR010666 Pfam:PF00098 Pfam:PF06839 PROSITE:PS50158
SMART:SM00343 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0046872
GO:GO:0008270 GO:GO:0003676 eggNOG:COG5082 Gene3D:4.10.60.10
SUPFAM:SSF57756 EMBL:AL138654 EMBL:AY065276 EMBL:AY133785
IPI:IPI00532574 PIR:T47344 RefSeq:NP_189872.1 UniGene:At.28534
ProteinModelPortal:Q9M1L9 SMR:Q9M1L9 EnsemblPlants:AT3G42860.1
GeneID:823332 KEGG:ath:AT3G42860 TAIR:At3g42860
HOGENOM:HOG000006218 InParanoid:Q9M1L9 OMA:CGFFKWC PhylomeDB:Q9M1L9
ProtClustDB:CLSN2684249 ArrayExpress:Q9M1L9 Genevestigator:Q9M1L9
Uniprot:Q9M1L9
Length = 372
Score = 113 (44.8 bits), Expect = 8.5e-08, Sum P(2) = 8.5e-08
Identities = 31/128 (24%), Positives = 43/128 (33%)
Query: 138 GHVARECTXXXXXXXXXXXXXXXXXXX--DPEHFARDC------PRQQXXXXXXXXXXXX 189
GH AR+CT P H++RDC P+ +
Sbjct: 246 GHWARDCTVQSDTGPVKSTSAAGDCFKCGKPGHWSRDCTAQSGNPKYEPGQMKSSSSSGE 305
Query: 190 CFKCGGYGHLARDCITXXXXXXXXXXXXXXXXXXHLARDCXXXXXXXXXSCFNCGKPGHF 249
C+KCG GH +RDC + C+ CGK GH+
Sbjct: 306 CYKCGKQGHWSRDC--------------TGQSSNQQFQSGQAKSTSSTGDCYKCGKAGHW 351
Query: 250 ARECTKVA 257
+R+CT A
Sbjct: 352 SRDCTSPA 359
Score = 36 (17.7 bits), Expect = 8.5e-08, Sum P(2) = 8.5e-08
Identities = 8/27 (29%), Positives = 13/27 (48%)
Query: 24 RPDDGGADLFVHQKSIKSDGYRTLYEN 50
R ++GG F +++S G T N
Sbjct: 124 REENGGCGFFQWCDAVQSSGTSTTTSN 150
>RGD|1307592 [details] [associations]
symbol:Lin28c "lin-28 homolog C (C. elegans)" species:10116
"Rattus norvegicus" [GO:0003674 "molecular_function" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] REFSEQ:XM_233546 Ncbi:XP_233546
Length = 196
Score = 102 (41.0 bits), Expect = 8.6e-08, Sum P(2) = 8.6e-08
Identities = 20/49 (40%), Positives = 32/49 (65%)
Query: 27 DGGADLFVHQKSIKSDGYRTLYENQSVEFDVQLEADGKYQALDVTAPGG 75
D D+FVHQ + ++G+R+L E ++VEF + A G +++ VT PGG
Sbjct: 54 DPTMDVFVHQSRLHTEGFRSLKEGEAVEFTFKKSAKG-LESIHVTGPGG 101
Score = 54 (24.1 bits), Expect = 8.6e-08, Sum P(2) = 8.6e-08
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 240 CFNCGKPGHFAREC 253
C+NCG H A+EC
Sbjct: 126 CYNCGGLDHHAKEC 139
Score = 53 (23.7 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 190 CFKCGGYGHLARDC 203
C+ CGG H A++C
Sbjct: 126 CYNCGGLDHHAKEC 139
>SGD|S000005199 [details] [associations]
symbol:GIS2 "Translational activator for mRNAs with internal
ribosome entry sites" species:4932 "Saccharomyces cerevisiae"
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA;IDA] [GO:0000932 "cytoplasmic mRNA
processing body" evidence=IDA] [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0010494 "cytoplasmic stress granule"
evidence=IDA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0042788 "polysomal ribosome" evidence=IPI] [GO:0045182
"translation regulator activity" evidence=IDA] [GO:0045727
"positive regulation of translation" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR001878 Pfam:PF00098
PROSITE:PS50158 SMART:SM00343 SGD:S000005199 GO:GO:0046872
GO:GO:0008270 GO:GO:0003729 EMBL:BK006947 GO:GO:0045182
GO:GO:0042788 GO:GO:0003697 eggNOG:COG5082 Gene3D:4.10.60.10
SUPFAM:SSF57756 GO:GO:0045727 EMBL:X96722 HOGENOM:HOG000186262
KO:K09250 GeneTree:ENSGT00510000047065 EMBL:Z71531 EMBL:AY558002
PIR:S63228 RefSeq:NP_014144.1 ProteinModelPortal:P53849 SMR:P53849
DIP:DIP-2669N IntAct:P53849 MINT:MINT-2732013 STRING:P53849
PaxDb:P53849 PeptideAtlas:P53849 EnsemblFungi:YNL255C GeneID:855466
KEGG:sce:YNL255C CYGD:YNL255c OMA:QCYNCGE OrthoDB:EOG4SJ8Q6
NextBio:979403 Genevestigator:P53849 GermOnline:YNL255C
Uniprot:P53849
Length = 153
Score = 122 (48.0 bits), Expect = 8.7e-08, P = 8.7e-08
Identities = 24/88 (27%), Positives = 38/88 (43%)
Query: 168 HFARDCPRQQXXXXXXXXXXXXCFKCGGYGHLARDCITXXXXXXXXXXXXXXXXXXHLAR 227
H +R+CP + C+KCGG H+A+DC+ H++R
Sbjct: 75 HISRECPEPKKTSRFSKVS---CYKCGGPNHMAKDCMKEDGISGLKCYTCGQAG--HMSR 129
Query: 228 DCXXXXXXXXXSCFNCGKPGHFARECTK 255
DC C+NC + GH +++C K
Sbjct: 130 DCQNDRL-----CYNCNETGHISKDCPK 152
Score = 104 (41.7 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 18/65 (27%), Positives = 27/65 (41%)
Query: 190 CFKCGGYGHLARDCITXXXXXXXXXXXXXXXXX-XHLARDCXXXXXXXXXSCFNCGKPGH 248
CF C GH++R+C H+A+DC C+ CG+ GH
Sbjct: 67 CFNCNQTGHISRECPEPKKTSRFSKVSCYKCGGPNHMAKDCMKEDGISGLKCYTCGQAGH 126
Query: 249 FAREC 253
+R+C
Sbjct: 127 MSRDC 131
Score = 100 (40.3 bits), Expect = 0.00011, P = 0.00011
Identities = 21/65 (32%), Positives = 25/65 (38%)
Query: 190 CFKCGGYGHLARDCITXXXXXXXXXXXXXXXXXXHLARDCXXXXXXXXXSCFNCGKPGHF 249
C+ CG GHLA DC H+ DC C+NCG+ GH
Sbjct: 6 CYVCGKIGHLAEDC-------DSERLCYNCNKPGHVQTDCTMPRTVEFKQCYNCGETGHV 58
Query: 250 ARECT 254
ECT
Sbjct: 59 RSECT 63
>UNIPROTKB|G3MZ41 [details] [associations]
symbol:ZCCHC13 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR001878
Pfam:PF00098 PROSITE:PS50158 SMART:SM00343 GO:GO:0046872
GO:GO:0008270 GO:GO:0003676 Gene3D:4.10.60.10 SUPFAM:SSF57756
GeneTree:ENSGT00510000047065 OMA:SSKECFK EMBL:DAAA02072583
Ensembl:ENSBTAT00000001124 Uniprot:G3MZ41
Length = 175
Score = 122 (48.0 bits), Expect = 8.7e-08, P = 8.7e-08
Identities = 21/66 (31%), Positives = 31/66 (46%)
Query: 190 CFKCGGYGHLARDCITXXXXXXXXXXXXXXXXXXHLARDCXXXXXXXXXSCFNCGKPGHF 249
C++CG +GH A+DC H+A+DC C+ CG+PGH
Sbjct: 52 CYRCGKFGHYAKDC------DLLDDICYNCGKSGHIAKDCAEPKREGERCCYTCGRPGHL 105
Query: 250 ARECTK 255
AR+C +
Sbjct: 106 ARDCDR 111
Score = 109 (43.4 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 23/67 (34%), Positives = 30/67 (44%)
Query: 190 CFKCGGYGHLARDCITXXXXXXXXXXXXXXXXXXHLARDCXXXXXXXXXSCFNCGKPGHF 249
C+ CG GH+A+DC HLARDC C++CGK GH
Sbjct: 72 CYNCGKSGHIAKDC--AEPKREGERCCYTCGRPGHLARDCDRQEER---KCYSCGKSGHI 126
Query: 250 ARECTKV 256
+ CT+V
Sbjct: 127 QKYCTQV 133
>CGD|CAL0002417 [details] [associations]
symbol:GIS2 species:5476 "Candida albicans" [GO:0070417
"cellular response to cold" evidence=IMP] [GO:0003676 "nucleic acid
binding" evidence=NAS] [GO:0071470 "cellular response to osmotic
stress" evidence=IMP] [GO:0035690 "cellular response to drug"
evidence=IMP] [GO:0042788 "polysomal ribosome" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0000747 "conjugation with cellular fusion"
evidence=IEA] [GO:0031137 "regulation of conjugation with cellular
fusion" evidence=IEA] [GO:0045727 "positive regulation of
translation" evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA]
[GO:0003697 "single-stranded DNA binding" evidence=IEA] [GO:0045182
"translation regulator activity" evidence=IEA] InterPro:IPR001878
Pfam:PF00098 PROSITE:PS50158 SMART:SM00343 CGD:CAL0002417
GO:GO:0046872 GO:GO:0008270 GO:GO:0003676 GO:GO:0035690
EMBL:AACQ01000100 EMBL:AACQ01000097 GO:GO:0071470 GO:GO:0070417
eggNOG:COG5082 Gene3D:4.10.60.10 SUPFAM:SSF57756
HOGENOM:HOG000186262 KO:K09250 RefSeq:XP_714599.1
RefSeq:XP_714730.1 ProteinModelPortal:Q59YJ9 STRING:Q59YJ9
GeneID:3643638 GeneID:3643744 KEGG:cal:CaO19.10692
KEGG:cal:CaO19.3182 Uniprot:Q59YJ9
Length = 175
Score = 122 (48.0 bits), Expect = 8.7e-08, P = 8.7e-08
Identities = 24/68 (35%), Positives = 31/68 (45%)
Query: 190 CFKCGGYGHLARDCITXXXXXXXXXXXXXXXXXXHLARDCXXXXXXXXXS---CFNCGKP 246
C+KCGG H ARDC H+++DC S C+NCGK
Sbjct: 113 CYKCGGPNHFARDC------QANTVKCYACGKVGHISKDCHSSAGGSNFSAKTCYNCGKS 166
Query: 247 GHFARECT 254
GH ++ECT
Sbjct: 167 GHISKECT 174
>UNIPROTKB|Q59YJ9 [details] [associations]
symbol:GIS2 "Putative uncharacterized protein GIS2"
species:237561 "Candida albicans SC5314" [GO:0003676 "nucleic acid
binding" evidence=NAS] [GO:0035690 "cellular response to drug"
evidence=IMP] [GO:0070417 "cellular response to cold" evidence=IMP]
[GO:0071470 "cellular response to osmotic stress" evidence=IMP]
InterPro:IPR001878 Pfam:PF00098 PROSITE:PS50158 SMART:SM00343
CGD:CAL0002417 GO:GO:0046872 GO:GO:0008270 GO:GO:0003676
GO:GO:0035690 EMBL:AACQ01000100 EMBL:AACQ01000097 GO:GO:0071470
GO:GO:0070417 eggNOG:COG5082 Gene3D:4.10.60.10 SUPFAM:SSF57756
HOGENOM:HOG000186262 KO:K09250 RefSeq:XP_714599.1
RefSeq:XP_714730.1 ProteinModelPortal:Q59YJ9 STRING:Q59YJ9
GeneID:3643638 GeneID:3643744 KEGG:cal:CaO19.10692
KEGG:cal:CaO19.3182 Uniprot:Q59YJ9
Length = 175
Score = 122 (48.0 bits), Expect = 8.7e-08, P = 8.7e-08
Identities = 24/68 (35%), Positives = 31/68 (45%)
Query: 190 CFKCGGYGHLARDCITXXXXXXXXXXXXXXXXXXHLARDCXXXXXXXXXS---CFNCGKP 246
C+KCGG H ARDC H+++DC S C+NCGK
Sbjct: 113 CYKCGGPNHFARDC------QANTVKCYACGKVGHISKDCHSSAGGSNFSAKTCYNCGKS 166
Query: 247 GHFARECT 254
GH ++ECT
Sbjct: 167 GHISKECT 174
>TIGR_CMR|GSU_0207 [details] [associations]
symbol:GSU_0207 "cold-shock domain family protein"
species:243231 "Geobacter sulfurreducens PCA" [GO:0003677 "DNA
binding" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0009409 "response to cold"
evidence=ISS] InterPro:IPR002059 InterPro:IPR011129
InterPro:IPR012156 Pfam:PF00313 PIRSF:PIRSF002599 PRINTS:PR00050
SMART:SM00357 Prosite:PS00352 GO:GO:0005737 GO:GO:0006355
GO:GO:0003677 EMBL:AE017180 GenomeReviews:AE017180_GR
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 HOGENOM:HOG000070674 KO:K03704
RefSeq:NP_951268.1 ProteinModelPortal:Q74GN9 SMR:Q74GN9
GeneID:2687733 KEGG:gsu:GSU0207 PATRIC:22023162 OMA:MSTITGN
BioCyc:GSUL243231:GH27-162-MONOMER Uniprot:Q74GN9
Length = 66
Score = 120 (47.3 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 25/63 (39%), Positives = 39/63 (61%)
Query: 9 GKVTWFDGAKGYGFIRPDDGGADLFVHQKSIKSDGYRTLYENQSVEFDVQLEADGKYQAL 68
G V WF+ +KG+GF+ ++G D+FVH +I +G+++L E V F+V G QA
Sbjct: 4 GTVKWFNDSKGFGFLEQENG-EDVFVHFSAINGNGFKSLAEGDRVTFEVTKGPKG-LQAA 61
Query: 69 DVT 71
+VT
Sbjct: 62 NVT 64
>ZFIN|ZDB-GENE-030131-7782 [details] [associations]
symbol:cnbpb "CCHC-type zinc finger, nucleic acid
binding protein b" species:7955 "Danio rerio" [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
InterPro:IPR001878 Pfam:PF00098 PROSITE:PS50158 SMART:SM00343
ZFIN:ZDB-GENE-030131-7782 GO:GO:0046872 GO:GO:0008270 GO:GO:0003676
Gene3D:4.10.60.10 SUPFAM:SSF57756 GeneTree:ENSGT00510000047065
InterPro:IPR025836 Pfam:PF14392 EMBL:CR855375 IPI:IPI00862287
Ensembl:ENSDART00000104520 Bgee:E7FCQ0 Uniprot:E7FCQ0
Length = 243
Score = 123 (48.4 bits), Expect = 1.6e-07, P = 1.6e-07
Identities = 26/88 (29%), Positives = 37/88 (42%)
Query: 168 HFARDCPR--QQXXXXXXXXXXXXCFKCGGYGHLARDCITXXXXXXXXXXXXXXXXXXHL 225
H+ ++CP + C++CG GH+ARDC H+
Sbjct: 96 HWIKNCPNAGRGRGKGRGRGKDLFCYRCGEPGHVARDC------ERTEDACYNCGRGGHI 149
Query: 226 ARDCXXXXXXXXXSCFNCGKPGHFAREC 253
+RDC C+NCGK GH AR+C
Sbjct: 150 SRDCKEPKKEREQVCYNCGKAGHMARDC 177
Score = 103 (41.3 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 21/65 (32%), Positives = 29/65 (44%)
Query: 190 CFKCGGYGHLARDCITXXXXXXXXXXXXXXXXXXHLARDCXXXXXXXXXSCFNCGKPGHF 249
C+ CGG+GH+ + C H+A C +C+NCGK GH
Sbjct: 185 CYSCGGFGHIQKGC--------EKVKCYRCGEIGHVAVQCSKASEV---NCYNCGKSGHV 233
Query: 250 ARECT 254
A+ECT
Sbjct: 234 AKECT 238
Score = 35 (17.4 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 5/7 (71%), Positives = 7/7 (100%)
Query: 138 GHVAREC 144
GH+AR+C
Sbjct: 171 GHMARDC 177
>TIGR_CMR|GSU_0191 [details] [associations]
symbol:GSU_0191 "cold-shock domain family protein"
species:243231 "Geobacter sulfurreducens PCA" [GO:0003677 "DNA
binding" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0009409 "response to cold"
evidence=ISS] InterPro:IPR002059 InterPro:IPR011129
InterPro:IPR012156 Pfam:PF00313 PIRSF:PIRSF002599 PRINTS:PR00050
SMART:SM00357 Prosite:PS00352 GO:GO:0005737 GO:GO:0006355
GO:GO:0003677 EMBL:AE017180 GenomeReviews:AE017180_GR
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 HOGENOM:HOG000070674 KO:K03704
RefSeq:NP_951252.1 ProteinModelPortal:Q74GQ5 SMR:Q74GQ5
GeneID:2687816 KEGG:gsu:GSU0191 PATRIC:22023128 OMA:SVTFDVQ
ProtClustDB:CLSK827691 BioCyc:GSUL243231:GH27-130-MONOMER
Uniprot:Q74GQ5
Length = 66
Score = 119 (46.9 bits), Expect = 1.8e-07, P = 1.8e-07
Identities = 24/63 (38%), Positives = 38/63 (60%)
Query: 9 GKVTWFDGAKGYGFIRPDDGGADLFVHQKSIKSDGYRTLYENQSVEFDVQLEADGKYQAL 68
G V WF+ +KG+GF+ ++G D+F H +I DG+++L E V F++ G QA
Sbjct: 4 GTVKWFNDSKGFGFLEQENG-EDVFCHFSAISGDGFKSLTEGDRVTFEITKGPKG-LQAA 61
Query: 69 DVT 71
+VT
Sbjct: 62 NVT 64
>WB|WBGene00000473 [details] [associations]
symbol:cey-2 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR002059 InterPro:IPR011129
Pfam:PF00313 PRINTS:PR00050 SMART:SM00357 Prosite:PS00352
GO:GO:0006355 GO:GO:0003677 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 InterPro:IPR019844 eggNOG:COG1278
GeneTree:ENSGT00390000009256 EMBL:FO081396 HSSP:P41016 PIR:T25767
RefSeq:NP_491645.1 ProteinModelPortal:P91306 SMR:P91306
DIP:DIP-26178N IntAct:P91306 MINT:MINT-1083994 STRING:P91306
PaxDb:P91306 EnsemblMetazoa:F46F11.2.1 EnsemblMetazoa:F46F11.2.2
GeneID:172219 KEGG:cel:CELE_F46F11.2 UCSC:F46F11.2.1 CTD:172219
WormBase:F46F11.2 HOGENOM:HOG000016644 InParanoid:P91306
OMA:VERIRIW NextBio:874555 Uniprot:P91306
Length = 267
Score = 123 (48.4 bits), Expect = 2.0e-07, P = 2.0e-07
Identities = 31/79 (39%), Positives = 44/79 (55%)
Query: 9 GKVTWFDGAKGYGFIRPDDGGADLFVHQKSIKSDG----Y-RTLYENQSVEFDVQLEADG 63
GKV W+ + YGFI +DG D+FVHQ +I Y RTL +++ V FD+ +E
Sbjct: 68 GKVKWYSVLRRYGFISRNDGEKDIFVHQTAIAKSATEKFYLRTLGDDEEVLFDL-VEGKN 126
Query: 64 KYQALDVTAPGGAPVHSSK 82
+A +VT P G V S+
Sbjct: 127 GPEAANVTGPNGDNVIGSR 145
>UNIPROTKB|G4MRA3 [details] [associations]
symbol:MGG_13778 "Zinc finger protein GIS2" species:242507
"Magnaporthe oryzae 70-15" [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR001878 Pfam:PF00098 PROSITE:PS50158 SMART:SM00343
GO:GO:0046872 GO:GO:0008270 GO:GO:0003676 Gene3D:4.10.60.10
SUPFAM:SSF57756 EMBL:CM001231 KO:K09250 RefSeq:XP_003710840.1
ProteinModelPortal:G4MRA3 EnsemblFungi:MGG_13778T0 GeneID:5048998
KEGG:mgr:MGG_13778 Uniprot:G4MRA3
Length = 230
Score = 105 (42.0 bits), Expect = 2.6e-07, Sum P(2) = 2.6e-07
Identities = 25/75 (33%), Positives = 33/75 (44%)
Query: 190 CFKCGGYGHLARDCITXXXXXXXXXXXXXXXXXXHLARDCXXXXX----XXXXSCFNCGK 245
C+KCGG H ARDC H++RDC +C+ CG+
Sbjct: 131 CYKCGGPNHFARDC------QAQAMKCYACGKLGHISRDCTAPNGGPLNTVGKTCYQCGE 184
Query: 246 PGHFAREC-TKV-AN 258
GH +R+C TK AN
Sbjct: 185 AGHISRQCPTKATAN 199
Score = 45 (20.9 bits), Expect = 2.6e-07, Sum P(2) = 2.6e-07
Identities = 15/62 (24%), Positives = 17/62 (27%)
Query: 136 GVGHVARECTXXXXXXXXXXXXXXXXXXXDPEHFARDCPRQQXXXXXXXXXXXXCFKCGG 195
G+GHV +C P H AR CP GG
Sbjct: 58 GLGHVQADCPTLRLSGAGSNGRCYSCG--QPGHLARACPNPNGANMGRGAPVPRGGYGGG 115
Query: 196 YG 197
YG
Sbjct: 116 YG 117
>WB|WBGene00019537 [details] [associations]
symbol:K08D12.3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0000003 "reproduction" evidence=IMP]
[GO:0040011 "locomotion" evidence=IMP] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] InterPro:IPR001878 Pfam:PF00098
PROSITE:PS50158 SMART:SM00343 GO:GO:0009792 GO:GO:0040007
GO:GO:0002119 GO:GO:0046872 GO:GO:0008270 GO:GO:0040011
GO:GO:0000003 GO:GO:0003676 Gene3D:4.10.60.10 SUPFAM:SSF57756
HOGENOM:HOG000186262 KO:K09250 OMA:FQFMSSS
GeneTree:ENSGT00510000047065 EMBL:FO081610 GeneID:176979
KEGG:cel:CELE_K08D12.3 UCSC:K08D12.3a.1 CTD:176979 NextBio:894830
RefSeq:NP_741323.1 ProteinModelPortal:Q966I7 SMR:Q966I7
STRING:Q966I7 PRIDE:Q966I7 EnsemblMetazoa:K08D12.3a.1
EnsemblMetazoa:K08D12.3a.2 WormBase:K08D12.3a InParanoid:Q966I7
ArrayExpress:Q966I7 Uniprot:Q966I7
Length = 151
Score = 116 (45.9 bits), Expect = 3.8e-07, P = 3.8e-07
Identities = 30/122 (24%), Positives = 41/122 (33%)
Query: 138 GHVARECTXXXXXXXXXXXXXXXXXXXDPE--HFARDCPR--QQXXXXXXXXXXXXCFKC 193
GH++R C E HF+RDCP+ C+ C
Sbjct: 13 GHISRNCPNGESDGGRRGGGGGSTCYNCQETGHFSRDCPKGGSGGGQRGGGGGGGSCYNC 72
Query: 194 GGYGHLARDCITXXXXXXXXXXXXXXXXXXHLARDCXXXXXXXXXSCFNCGKPGHFAREC 253
GG GH +RDC + C+NCG+ GH +REC
Sbjct: 73 GGRGHYSRDCPSARSEGGSGGYGGRGGEGRSFGGQ----------KCYNCGRSGHISREC 122
Query: 254 TK 255
T+
Sbjct: 123 TE 124
Score = 74 (31.1 bits), Expect = 3.5e-05, Sum P(2) = 3.5e-05
Identities = 10/35 (28%), Positives = 17/35 (48%)
Query: 224 HLARDCXXXXXXXXXSCFNCGKPGHFARECTKVAN 258
H++R+C C+ C + GH +R+C N
Sbjct: 117 HISRECTESGSAEEKRCYQCQETGHISRDCPSQTN 151
Score = 69 (29.3 bits), Expect = 3.5e-05, Sum P(2) = 3.5e-05
Identities = 12/39 (30%), Positives = 17/39 (43%)
Query: 166 PEHFARDCPR-QQXXXXXXXXXXXXCFKCGGYGHLARDC 203
P H +R+CP + C+ C GH +RDC
Sbjct: 12 PGHISRNCPNGESDGGRRGGGGGSTCYNCQETGHFSRDC 50
>UNIPROTKB|I3LFV4 [details] [associations]
symbol:YBX1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313 PRINTS:PR00050
SMART:SM00357 GO:GO:0001701 GO:GO:0000122 GO:GO:0003697
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0010494
GeneTree:ENSGT00390000009256 GO:GO:0005689 GO:GO:0070937
GO:GO:0070934 GO:GO:0071204 GO:GO:0051154 OMA:VEGADNQ EMBL:CU929642
EMBL:CU467721 Ensembl:ENSSSCT00000026666 Uniprot:I3LFV4
Length = 324
Score = 120 (47.3 bits), Expect = 6.8e-07, P = 6.8e-07
Identities = 29/74 (39%), Positives = 45/74 (60%)
Query: 13 WFDGAKGYGFIRPDDGGADLFVHQKSIKSDG---Y-RTLYENQSVEFDVQLEADGKYQAL 68
WF K +++ +D D+FVHQ +IK + Y R++ + ++VEFDV +E + +A
Sbjct: 65 WFLQNKFDAYLKLNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDV-VEGEKGAEAA 123
Query: 69 DVTAPGGAPVHSSK 82
+VT PGG PV SK
Sbjct: 124 NVTGPGGVPVQGSK 137
>DICTYBASE|DDB_G0293328 [details] [associations]
symbol:DDB_G0293328 "Cellular nucleic acid-binding
protein" species:44689 "Dictyostelium discoideum" [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR001878
Pfam:PF00098 PROSITE:PS50158 SMART:SM00343 dictyBase:DDB_G0293328
GO:GO:0046872 GO:GO:0008270 GO:GO:0003676 eggNOG:COG5082
Gene3D:4.10.60.10 SUPFAM:SSF57756 EMBL:AAFI02000201
RefSeq:XP_629203.1 ProteinModelPortal:Q54BY8 STRING:Q54BY8
EnsemblProtists:DDB0191881 GeneID:8629162 KEGG:ddi:DDB_G0293328
InParanoid:Q54BY8 OMA:CKEVGHI ProtClustDB:PTZ00368 Uniprot:Q54BY8
Length = 131
Score = 113 (44.8 bits), Expect = 7.8e-07, P = 7.8e-07
Identities = 24/90 (26%), Positives = 35/90 (38%)
Query: 168 HFARDCPRQQXXXXXXXXXXXXCFKCGGYGHLARDCITXXXXXXXXXXXXXXXXXXHLAR 227
H +R+CP Q C++C G+GH ARDC H+++
Sbjct: 41 HLSRECP-QNPQPTFEKKDPIKCYQCNGFGHFARDC-----RRGRDNKCYNCGGLGHISK 94
Query: 228 DCXXXXXXX----XXSCFNCGKPGHFAREC 253
DC C+ C +PGH A+ C
Sbjct: 95 DCPSPSTRGQGRDAAKCYKCNQPGHIAKAC 124
Score = 91 (37.1 bits), Expect = 0.00085, P = 0.00085
Identities = 23/89 (25%), Positives = 33/89 (37%)
Query: 168 HFARDCPRQQXXXXXXXXXXXXCFKCGGYGHLARDCITX---XXXXXXXXXXXXXXXXXH 224
H +R+CP+ C+ C GHL+R+C H
Sbjct: 17 HISRNCPKNPEAGDRA------CYVCNVVGHLSRECPQNPQPTFEKKDPIKCYQCNGFGH 70
Query: 225 LARDCXXXXXXXXXSCFNCGKPGHFAREC 253
ARDC C+NCG GH +++C
Sbjct: 71 FARDCRRGRDN---KCYNCGGLGHISKDC 96
>POMBASE|SPAC13D6.02c [details] [associations]
symbol:byr3 "zinc finger protein Byr3" species:4896
"Schizosaccharomyces pombe" [GO:0000747 "conjugation with cellular
fusion" evidence=IMP] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005829 "cytosol"
evidence=IDA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0031137 "regulation of conjugation with cellular fusion"
evidence=IGI] InterPro:IPR001878 Pfam:PF00098 PROSITE:PS50158
SMART:SM00343 PomBase:SPAC13D6.02c GO:GO:0005829 EMBL:CU329670
GO:GO:0005730 GenomeReviews:CU329670_GR GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 eggNOG:COG5082 Gene3D:4.10.60.10 SUPFAM:SSF57756
GO:GO:0000747 EMBL:S45038 PIR:T37622 RefSeq:NP_593680.1
ProteinModelPortal:P36627 STRING:P36627 PRIDE:P36627
EnsemblFungi:SPAC13D6.02c.1 GeneID:2542829 KEGG:spo:SPAC13D6.02c
HOGENOM:HOG000186262 KO:K09250 OMA:FQFMSSS OrthoDB:EOG4K0TXR
NextBio:20803871 GO:GO:0031137 Uniprot:P36627
Length = 179
Score = 112 (44.5 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 37/140 (26%), Positives = 47/140 (33%)
Query: 138 GHVARECTXXXXXXXXXXXXXXXXXXXDPE------------HFARDCPRQQXXXXXXXX 185
GH ARECT +P+ H RDCP
Sbjct: 26 GHQARECTKGSICYNCNQTGHKASECTEPQQEKTCYACGTAGHLVRDCPSSPNPRQGAE- 84
Query: 186 XXXXCFKCGGYGHLARDCITXXXXXXXXXXXXXXX-------XXXHLARDCXXXXXXXXX 238
C+KCG GH+ARDC T H ARDC
Sbjct: 85 ----CYKCGRVGHIARDCRTNGQQSGGRFGGHRSNMNCYACGSYGHQARDCTMGV----- 135
Query: 239 SCFNCGKPGHFARECTKVAN 258
C++CGK GH + EC + ++
Sbjct: 136 KCYSCGKIGHRSFECQQASD 155
Score = 103 (41.3 bits), Expect = 8.4e-05, P = 8.4e-05
Identities = 26/90 (28%), Positives = 32/90 (35%)
Query: 168 HFARDCP---RQQXXXXXXXXXXXXCFKCGGYGHLARDCITXXXXXXXXXXXXXXXXXXH 224
H ARDC +Q C+ CG YGH ARDC H
Sbjct: 93 HIARDCRTNGQQSGGRFGGHRSNMNCYACGSYGHQARDC-------TMGVKCYSCGKIGH 145
Query: 225 LARDCXXXXXXXXXSCFNCGKPGHFARECT 254
+ +C C+ C +PGH A CT
Sbjct: 146 RSFECQQASDGQL--CYKCNQPGHIAVNCT 173
>UNIPROTKB|J9NRQ2 [details] [associations]
symbol:ZCCHC13 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR001878 Pfam:PF00098 PROSITE:PS50158 SMART:SM00343
GO:GO:0046872 GO:GO:0008270 GO:GO:0003676 Gene3D:4.10.60.10
SUPFAM:SSF57756 GeneTree:ENSGT00510000047065 EMBL:AAEX03026520
Ensembl:ENSCAFT00000049751 OMA:EEQKCYS Uniprot:J9NRQ2
Length = 146
Score = 111 (44.1 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 23/67 (34%), Positives = 32/67 (47%)
Query: 190 CFKCGGYGHLARDCITXXXXXXXXXXXXXXXXXXHLARDCXXXXXXXXXSCFNCGKPGHF 249
C+ CG GH+A+DCI HLARDC C++CG+ GH
Sbjct: 68 CYNCGRSGHIAKDCIEPKREREQCCYTCGRPG--HLARDCDRQEEQ---KCYSCGEYGHI 122
Query: 250 ARECTKV 256
++CT+V
Sbjct: 123 QKDCTQV 129
Score = 109 (43.4 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 20/66 (30%), Positives = 30/66 (45%)
Query: 190 CFKCGGYGHLARDCITXXXXXXXXXXXXXXXXXXHLARDCXXXXXXXXXSCFNCGKPGHF 249
C++CG GH A++C H+A+DC C+ CG+PGH
Sbjct: 48 CYRCGKSGHHAKNC------DLLEDICYNCGRSGHIAKDCIEPKREREQCCYTCGRPGHL 101
Query: 250 ARECTK 255
AR+C +
Sbjct: 102 ARDCDR 107
>GENEDB_PFALCIPARUM|PFA0470c [details] [associations]
symbol:PFA0470c "cold-shock protein, putative"
species:5833 "Plasmodium falciparum" [GO:0003690 "double-stranded
DNA binding" evidence=ISS] InterPro:IPR002059 Pfam:PF00313
Prosite:PS00352 GO:GO:0006355 GO:GO:0003690 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 EMBL:AL844501 InterPro:IPR019844
HSSP:P41016 RefSeq:XP_001351026.1 ProteinModelPortal:Q8I248
EnsemblProtists:PFA0470c:mRNA GeneID:813231 KEGG:pfa:PFA_0470c
HOGENOM:HOG000065787 ProtClustDB:CLSZ2514484 Uniprot:Q8I248
Length = 150
Score = 111 (44.1 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 20/32 (62%), Positives = 23/32 (71%)
Query: 8 TGKVTWFDGAKGYGFIRPDDGGADLFVHQKSI 39
TG V FD KGYGFI+P+DGG D+FVH I
Sbjct: 31 TGNVIMFDKRKGYGFIKPNDGGPDIFVHYTDI 62
>UNIPROTKB|Q8I248 [details] [associations]
symbol:PFA_0470c "Cold-shock protein, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003690
"double-stranded DNA binding" evidence=ISS] InterPro:IPR002059
Pfam:PF00313 Prosite:PS00352 GO:GO:0006355 GO:GO:0003690
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 EMBL:AL844501
InterPro:IPR019844 HSSP:P41016 RefSeq:XP_001351026.1
ProteinModelPortal:Q8I248 EnsemblProtists:PFA0470c:mRNA
GeneID:813231 KEGG:pfa:PFA_0470c HOGENOM:HOG000065787
ProtClustDB:CLSZ2514484 Uniprot:Q8I248
Length = 150
Score = 111 (44.1 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 20/32 (62%), Positives = 23/32 (71%)
Query: 8 TGKVTWFDGAKGYGFIRPDDGGADLFVHQKSI 39
TG V FD KGYGFI+P+DGG D+FVH I
Sbjct: 31 TGNVIMFDKRKGYGFIKPNDGGPDIFVHYTDI 62
>TIGR_CMR|SPO_2140 [details] [associations]
symbol:SPO_2140 "cold shock DNA-binding domain protein"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0003677 "DNA binding"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0009409 "response to cold"
evidence=ISS] InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313
PRINTS:PR00050 SMART:SM00357 GO:GO:0005737 GO:GO:0006355
EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0003677
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 KO:K03704
RefSeq:YP_167367.1 ProteinModelPortal:Q5LRI8 GeneID:3193503
KEGG:sil:SPO2140 PATRIC:23377625 HOGENOM:HOG000139725 OMA:FIVPDNG
ProtClustDB:CLSK933775 Uniprot:Q5LRI8
Length = 175
Score = 111 (44.1 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 20/64 (31%), Positives = 37/64 (57%)
Query: 9 GKVTWFDGAKGYGFIRPDDGGADLFVHQKSIKSDGYRTLYENQSVEFDVQLEADGKYQAL 68
G+V WFD KGYGF+ ++GG D+ +H +++ G ++ + ++E D QA+
Sbjct: 13 GRVKWFDPTKGYGFVVAEEGGPDILLHVNVLRNFGQSSVADGAAIEIMTH-RTDRGVQAV 71
Query: 69 DVTA 72
+V +
Sbjct: 72 EVVS 75
>UNIPROTKB|F1RZ18 [details] [associations]
symbol:F1RZ18 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313 PRINTS:PR00050
SMART:SM00357 GO:GO:0006355 GO:GO:0003677 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GeneTree:ENSGT00390000009256
EMBL:FP102825 Ensembl:ENSSSCT00000014024 Uniprot:F1RZ18
Length = 302
Score = 115 (45.5 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 30/82 (36%), Positives = 47/82 (57%)
Query: 5 TRSTGKVTWFDGAKGYGFIRPDDGGADLFVHQKSIKSDGYR----TLYENQSVEFDVQLE 60
T+ V W++ GYGF R +D +FVHQ +IK + R ++ + ++VEFD+ +E
Sbjct: 50 TKVLRTVKWYNVRNGYGFNR-NDTKKYIFVHQTAIKKNNPRKYLHSVEDGETVEFDI-VE 107
Query: 61 ADGKYQALDVTAPGGAPVHSSK 82
+ K +A +VT PGG V K
Sbjct: 108 GE-KGRAANVTGPGGVSVQCGK 128
>UNIPROTKB|Q8WW36 [details] [associations]
symbol:ZCCHC13 "Zinc finger CCHC domain-containing protein
13" species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001878 Pfam:PF00098 PROSITE:PS50158 SMART:SM00343
GO:GO:0046872 GO:GO:0008270 GO:GO:0003676 eggNOG:COG5082
Gene3D:4.10.60.10 SUPFAM:SSF57756 HOGENOM:HOG000186262
HOVERGEN:HBG000397 EMBL:BC021176 IPI:IPI00397484 RefSeq:NP_976048.1
UniGene:Hs.157231 ProteinModelPortal:Q8WW36 SMR:Q8WW36
IntAct:Q8WW36 MINT:MINT-2879587 PhosphoSite:Q8WW36 DMDM:71152962
PRIDE:Q8WW36 DNASU:389874 Ensembl:ENST00000339534 GeneID:389874
KEGG:hsa:389874 UCSC:uc004ebs.4 CTD:389874 GeneCards:GC0XP073524
HGNC:HGNC:31749 HPA:HPA003382 neXtProt:NX_Q8WW36
PharmGKB:PA134926925 InParanoid:Q8WW36 OMA:SSKECFK PhylomeDB:Q8WW36
GenomeRNAi:389874 NextBio:103180 Bgee:Q8WW36 CleanEx:HS_ZCCHC13
Genevestigator:Q8WW36 GermOnline:ENSG00000187969 Uniprot:Q8WW36
Length = 166
Score = 107 (42.7 bits), Expect = 4.1e-06, P = 4.1e-06
Identities = 22/67 (32%), Positives = 30/67 (44%)
Query: 190 CFKCGGYGHLARDCITXXXXXXXXXXXXXXXXXXHLARDCXXXXXXXXXSCFNCGKPGHF 249
C+ CG GH+A+DC HLARDC C++CGK GH
Sbjct: 67 CYNCGRSGHIAKDC--KDPKRERRQHCYTCGRLGHLARDCDRQKEQ---KCYSCGKLGHI 121
Query: 250 ARECTKV 256
++C +V
Sbjct: 122 QKDCAQV 128
>UNIPROTKB|F1M549 [details] [associations]
symbol:F1M549 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313
SMART:SM00357 GO:GO:0006355 GO:GO:0003677 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GeneTree:ENSGT00390000009256
IPI:IPI00764317 Ensembl:ENSRNOT00000013847 Uniprot:F1M549
Length = 305
Score = 111 (44.1 bits), Expect = 5.9e-06, P = 5.9e-06
Identities = 33/82 (40%), Positives = 44/82 (53%)
Query: 4 LTRST-GKVTWFDGAKGYGFIRPDDGGADLFVHQKSIKSDGYRTLYE--NQSVEFDVQLE 60
+TR G V WF GYGFI +D D+ V Q +IK++ + L + EFDV +E
Sbjct: 48 ITRKVLGTVKWFV-RNGYGFINRNDTKEDVCVQQIAIKNNSRKDLRSVGDGETEFDV-VE 105
Query: 61 ADGKYQALDVTAPGGAPVHSSK 82
+ K A + T PGGAPV K
Sbjct: 106 GE-KGDAENDTGPGGAPVQGRK 126
>UNIPROTKB|O53883 [details] [associations]
symbol:cspB "Cold-shock domain family protein" species:1773
"Mycobacterium tuberculosis" [GO:0005618 "cell wall" evidence=IDA]
[GO:0005886 "plasma membrane" evidence=IDA] InterPro:IPR002059
InterPro:IPR011129 Pfam:PF00313 PRINTS:PR00050 SMART:SM00357
GO:GO:0005886 GO:GO:0005737 GO:GO:0005618 GO:GO:0006355
EMBL:AE000516 GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR
GO:GO:0003677 EMBL:BX842574 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 KO:K03704 EMBL:AL123456 PIR:G70816
RefSeq:NP_215386.1 RefSeq:NP_335321.1 RefSeq:YP_006514222.1
HSSP:P32081 SMR:O53883 EnsemblBacteria:EBMYCT00000000603
EnsemblBacteria:EBMYCT00000069203 GeneID:13318773 GeneID:885725
GeneID:926203 KEGG:mtc:MT0893 KEGG:mtu:Rv0871 KEGG:mtv:RVBD_0871
PATRIC:18123716 TubercuList:Rv0871 HOGENOM:HOG000070675 OMA:KVQPDLR
ProtClustDB:CLSK871866 Uniprot:O53883
Length = 135
Score = 103 (41.3 bits), Expect = 9.0e-06, P = 9.0e-06
Identities = 24/63 (38%), Positives = 35/63 (55%)
Query: 8 TGKVTWFDGAKGYGFIRPDDGGADLFVHQKSIKSDGYRTLYENQSVEFDVQLEADGKYQA 67
TGKV W+D KG+GF+ +GG D++V ++ + G L Q VEF + G QA
Sbjct: 3 TGKVKWYDPDKGFGFLS-QEGGEDVYVRSSALPT-GVEALKAGQRVEFGIASGRRGP-QA 59
Query: 68 LDV 70
L +
Sbjct: 60 LSL 62
>FB|FBgn0034802 [details] [associations]
symbol:CG3800 species:7227 "Drosophila melanogaster"
[GO:0003676 "nucleic acid binding" evidence=ISS;NAS] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001878 Pfam:PF00098 PROSITE:PS50158 SMART:SM00343
EMBL:AE013599 GO:GO:0046872 GO:GO:0008270 GO:GO:0003676
eggNOG:COG5082 Gene3D:4.10.60.10 SUPFAM:SSF57756 KO:K09250
GeneTree:ENSGT00510000047065 OMA:QCYNCGE EMBL:AY075371
EMBL:AY118596 RefSeq:NP_001188992.1 RefSeq:NP_611739.1
UniGene:Dm.5513 ProteinModelPortal:Q8T8R1 SMR:Q8T8R1
MINT:MINT-943666 STRING:Q8T8R1 PaxDb:Q8T8R1 PRIDE:Q8T8R1
EnsemblMetazoa:FBtr0071994 EnsemblMetazoa:FBtr0303464 GeneID:37646
KEGG:dme:Dmel_CG3800 UCSC:CG3800-RA FlyBase:FBgn0034802
InParanoid:Q8T8R1 OrthoDB:EOG40RXZ0 PhylomeDB:Q8T8R1
GenomeRNAi:37646 NextBio:804714 Bgee:Q8T8R1 Uniprot:Q8T8R1
Length = 165
Score = 94 (38.1 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 22/93 (23%), Positives = 35/93 (37%)
Query: 168 HFARDCPRQQXXXXXXXXXXXXCFKCGGYGHLARDCITXXXXXXXXXXXXXXXXXXHLAR 227
HFAR CP + C++C G GH+++DC H R
Sbjct: 65 HFARACPEE----------AERCYRCNGIGHISKDC-----TQADNPTCYRCNKTGHWVR 109
Query: 228 DCXXXXXX---XXXSCFNCGKPGHFARECTKVA 257
+C SC+ C + GH ++ C + +
Sbjct: 110 NCPEAVNERGPTNVSCYKCNRTGHISKNCPETS 142
Score = 93 (37.8 bits), Expect = 2.3e-05, Sum P(2) = 2.3e-05
Identities = 19/69 (27%), Positives = 28/69 (40%)
Query: 190 CFKCGGYGHLARDCITXXXXXXXXXXXXXXXXXXHLARDCXXXXXXXXXSCFNCGKPGHF 249
C+KC +GH AR C H+++DC +C+ C K GH+
Sbjct: 57 CYKCNQFGHFARAC------PEEAERCYRCNGIGHISKDCTQADNP---TCYRCNKTGHW 107
Query: 250 ARECTKVAN 258
R C + N
Sbjct: 108 VRNCPEAVN 116
Score = 85 (35.0 bits), Expect = 0.00054, Sum P(2) = 0.00054
Identities = 17/65 (26%), Positives = 26/65 (40%)
Query: 190 CFKCGGYGHLARDCITXXXXXXXXXXXXXX-XXXXHLARDCXXXXXXXXXSCFNCGKPGH 248
C++C GH R+C H++++C +C+ CGK GH
Sbjct: 98 CYRCNKTGHWVRNCPEAVNERGPTNVSCYKCNRTGHISKNCPETSK----TCYGCGKSGH 153
Query: 249 FAREC 253
REC
Sbjct: 154 LRREC 158
Score = 43 (20.2 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 7/8 (87%), Positives = 7/8 (87%)
Query: 166 PEHFARDC 173
P HFARDC
Sbjct: 13 PGHFARDC 20
Score = 34 (17.0 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 5/8 (62%), Positives = 7/8 (87%)
Query: 138 GHVARECT 145
GH AR+C+
Sbjct: 14 GHFARDCS 21
>UNIPROTKB|G3N2S9 [details] [associations]
symbol:G3N2S9 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313 PRINTS:PR00050
SMART:SM00357 Prosite:PS00352 GO:GO:0006355 GO:GO:0003677
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 GeneTree:ENSGT00390000009256 EMBL:DAAA02073372
Ensembl:ENSBTAT00000065366 Uniprot:G3N2S9
Length = 224
Score = 107 (42.7 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 32/83 (38%), Positives = 43/83 (51%)
Query: 4 LTRST-GKVTWFDGAKGYGFIRPDDGGADLFVHQKSIKSDG---YRTLYEN-QSVEFDVQ 58
+ RS G V F KGYGFI + D+FVH +I YR EN ++VEFDV
Sbjct: 6 IARSVLGSVVRFKEKKGYGFISMHNTQEDVFVHHTAITRKNPCMYRGSVENGETVEFDV- 64
Query: 59 LEADGKYQALDVTAPGGAPVHSS 81
++ + +A VT P AP+ S
Sbjct: 65 VQGEQGTKAAKVTGPVDAPLKGS 87
>UNIPROTKB|H0Y449 [details] [associations]
symbol:YBX1 "Nuclease-sensitive element-binding protein 1"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0043231
"intracellular membrane-bounded organelle" evidence=IDA]
InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313 PRINTS:PR00050
SMART:SM00357 GO:GO:0043231 GO:GO:0005737 GO:GO:0006355
GO:GO:0003677 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
EMBL:AC098484 HGNC:HGNC:8014 ProteinModelPortal:H0Y449 PRIDE:H0Y449
Ensembl:ENST00000436427 Uniprot:H0Y449
Length = 374
Score = 108 (43.1 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 26/61 (42%), Positives = 39/61 (63%)
Query: 26 DDGGADLFVHQKSIKSDG---Y-RTLYENQSVEFDVQLEADGKYQALDVTAPGGAPVHSS 81
+D D+FVHQ +IK + Y R++ + ++VEFDV +E + +A +VT PGG PV S
Sbjct: 128 NDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDV-VEGEKGAEAANVTGPGGVPVQGS 186
Query: 82 K 82
K
Sbjct: 187 K 187
>UNIPROTKB|F1PZ69 [details] [associations]
symbol:F1PZ69 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313
PRINTS:PR00050 SMART:SM00357 GO:GO:0006355 GO:GO:0003677
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
GeneTree:ENSGT00390000009256 EMBL:AAEX03013316
Ensembl:ENSCAFT00000008808 Uniprot:F1PZ69
Length = 306
Score = 107 (42.7 bits), Expect = 3.2e-05, P = 3.2e-05
Identities = 30/78 (38%), Positives = 39/78 (50%)
Query: 9 GKVTWFDGAKG-YGFIRPDDGGADLFVHQKSIKSDGYR----TLYENQSVEFDVQLEADG 63
G V WF G YG I +D D F HQ +IK + R ++ + +VEFDV E +
Sbjct: 53 GTVKWFSVRNGGYGLINRNDTKEDAFAHQTAIKKNNPRKYLCSVGDGDTVEFDVA-EGEK 111
Query: 64 KYQALDVTAPGGAPVHSS 81
+A V PGG PV S
Sbjct: 112 GAEAAPV-GPGGVPVQGS 128
>UNIPROTKB|F1NA94 [details] [associations]
symbol:F1NA94 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313 PRINTS:PR00050
SMART:SM00357 GO:GO:0006355 GO:GO:0003677 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GeneTree:ENSGT00390000009256
EMBL:AADN02037767 EMBL:AADN02037762 EMBL:AADN02037763
EMBL:AADN02037764 EMBL:AADN02037765 EMBL:AADN02037766
IPI:IPI00581805 Ensembl:ENSGALT00000023812 ArrayExpress:F1NA94
Uniprot:F1NA94
Length = 214
Score = 106 (42.4 bits), Expect = 3.6e-05, P = 3.6e-05
Identities = 28/82 (34%), Positives = 44/82 (53%)
Query: 5 TRSTGKVTWFDGAKGYGFIRPDDGGADLFVHQKSIKSDG---Y-RTLYENQSVEFDVQLE 60
T+ G V WF+ GYGFI + + +IK + Y R++ + ++VEFDV +E
Sbjct: 2 TKVLGTVKWFNVRNGYGFINRYVARHSVNLDPTAIKKNNPRKYLRSVGDGETVEFDV-VE 60
Query: 61 ADGKYQALDVTAPGGAPVHSSK 82
+ +A +VT P G PV S+
Sbjct: 61 GEKGAEAANVTGPDGVPVEGSR 82
>UNIPROTKB|Q65XV7 [details] [associations]
symbol:P0016H04.11 "Os05g0111000 protein" species:39947
"Oryza sativa Japonica Group" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR001878 InterPro:IPR004365
InterPro:IPR004591 InterPro:IPR007199 Pfam:PF00098 Pfam:PF01336
Pfam:PF04057 PROSITE:PS50158 SMART:SM00343 GO:GO:0005634
GO:GO:0046872 GO:GO:0003677 GO:GO:0006260 GO:GO:0008270
EMBL:AP008211 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
Gene3D:4.10.60.10 SUPFAM:SSF57756 EMBL:CM000142 InterPro:IPR013955
Pfam:PF08646 eggNOG:COG1599 KO:K07466 TIGRFAMs:TIGR00617
HOGENOM:HOG000162322 EMBL:AC079356 RefSeq:NP_001054445.1
UniGene:Os.53618 IntAct:Q65XV7 EnsemblPlants:LOC_Os05g02040.1
GeneID:4337594 KEGG:osa:4337594 OMA:RWTIKVR ProtClustDB:CLSN2695308
Uniprot:Q65XV7
Length = 951
Score = 108 (43.1 bits), Expect = 6.4e-05, P = 6.4e-05
Identities = 23/64 (35%), Positives = 27/64 (42%)
Query: 190 CFKCGGYGHLARDCITXXXXXXXXXXXXXXXXXXHLARDCXXXXXXXXXSCFNCGKPGHF 249
C+KC GH ARDC H +RDC CF C +PGHF
Sbjct: 861 CYKCKQPGHYARDC---PGQSTGGLECFKCKQPGHFSRDCPVQSTGGS-ECFKCKQPGHF 916
Query: 250 AREC 253
AR+C
Sbjct: 917 ARDC 920
>WB|WBGene00000475 [details] [associations]
symbol:cey-4 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IDA] [GO:0043021 "ribonucleoprotein complex binding"
evidence=IDA] InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313
SMART:SM00357 GO:GO:0006355 GO:GO:0003677 GO:GO:0030529
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0043021
GeneTree:ENSGT00390000009256 EMBL:AL023839 EMBL:Z73424 PIR:T19920
RefSeq:NP_499393.1 HSSP:P41016 ProteinModelPortal:G5EDV3 SMR:G5EDV3
IntAct:G5EDV3 EnsemblMetazoa:Y39A1C.3.1 EnsemblMetazoa:Y39A1C.3.2
GeneID:176516 KEGG:cel:CELE_Y39A1C.3 CTD:176516 WormBase:Y39A1C.3
OMA:VFDIVEG NextBio:892912 Uniprot:G5EDV3
Length = 294
Score = 106 (42.4 bits), Expect = 7.8e-05, P = 7.8e-05
Identities = 32/82 (39%), Positives = 42/82 (51%)
Query: 9 GKVTWFDGAKGYGFI---RPDDGGADLFVHQKSI-KSDG---Y-RTLYENQSVEFDVQLE 60
G V WF YGF+ +P D D FVHQ +I KS Y RTL +++ V FD+
Sbjct: 91 GHVKWFSVRGRYGFVARDKPTDENEDFFVHQTAITKSSTIKFYLRTLDDDEPVVFDIVEG 150
Query: 61 ADGKYQALDVTAPGGAPVHSSK 82
G +A +VT P G V S+
Sbjct: 151 LKGP-EAANVTGPDGENVRGSR 171
>TIGR_CMR|ECH_0298 [details] [associations]
symbol:ECH_0298 "cold shock protein, CSD family"
species:205920 "Ehrlichia chaffeensis str. Arkansas" [GO:0003677
"DNA binding" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] [GO:0009409 "response
to cold" evidence=ISS] InterPro:IPR002059 InterPro:IPR011129
InterPro:IPR012156 Pfam:PF00313 PIRSF:PIRSF002599 SMART:SM00357
GO:GO:0005737 GO:GO:0006355 GO:GO:0003677 EMBL:CP000236
GenomeReviews:CP000236_GR Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 eggNOG:COG1278 KO:K03704 HOGENOM:HOG000070673
RefSeq:YP_507119.1 ProteinModelPortal:Q2GHG4 STRING:Q2GHG4
GeneID:3927002 KEGG:ech:ECH_0298 PATRIC:20576101 OMA:SYDVLQD
ProtClustDB:CLSK749336 BioCyc:ECHA205920:GJNR-298-MONOMER
Uniprot:Q2GHG4
Length = 88
Score = 93 (37.8 bits), Expect = 0.00010, P = 0.00010
Identities = 24/73 (32%), Positives = 37/73 (50%)
Query: 8 TGKVTWFDGAKGYGFIRPDDGG----------ADLFVHQKSIKSDGYRTLYENQSVEFDV 57
TG V WF KGYGFI D G D+FVH +++ L E Q V++ +
Sbjct: 12 TGYVKWFSSEKGYGFICKDQGNNKIRNIGQDIKDIFVHITALQRSKIDGLREGQKVKYQL 71
Query: 58 QLEADGKYQALDV 70
+ +GK+ A+++
Sbjct: 72 D-KNNGKFSAVNL 83
>TIGR_CMR|APH_0135 [details] [associations]
symbol:APH_0135 "cold shock protein, CSD family"
species:212042 "Anaplasma phagocytophilum HZ" [GO:0003677 "DNA
binding" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0009409 "response to cold"
evidence=ISS] InterPro:IPR002059 InterPro:IPR011129
InterPro:IPR012156 Pfam:PF00313 PIRSF:PIRSF002599 SMART:SM00357
GO:GO:0005737 GO:GO:0006355 GO:GO:0003677 EMBL:CP000235
GenomeReviews:CP000235_GR Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 eggNOG:COG1278 KO:K03704 HOGENOM:HOG000070673
OMA:SYDVLQD ProtClustDB:CLSK749336 RefSeq:YP_504760.1
ProteinModelPortal:Q2GLJ1 STRING:Q2GLJ1 GeneID:3929975
KEGG:aph:APH_0135 PATRIC:20948842
BioCyc:APHA212042:GHPM-170-MONOMER Uniprot:Q2GLJ1
Length = 89
Score = 90 (36.7 bits), Expect = 0.00021, P = 0.00021
Identities = 27/74 (36%), Positives = 36/74 (48%)
Query: 8 TGKVTWFDGAKGYGFIRPDD-----GGA------DLFVHQKSIKSDGYRTLYENQSVEFD 56
TG V WF KGYGFI D G A D+FVH S++ L E Q V +
Sbjct: 12 TGHVKWFSVEKGYGFICKDSSEGSKGSAMGHGEKDVFVHITSLQRSRIDNLREGQKVRYQ 71
Query: 57 VQLEADGKYQALDV 70
+ E +GK A+++
Sbjct: 72 LD-ENNGKVSAVNL 84
>UNIPROTKB|F1LUS5 [details] [associations]
symbol:F1LUS5 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] InterPro:IPR002059 Pfam:PF00313 PRINTS:PR00050
GO:GO:0006355 GO:GO:0003677 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 GeneTree:ENSGT00390000009256 IPI:IPI00566025
Ensembl:ENSRNOT00000032550 Uniprot:F1LUS5
Length = 210
Score = 101 (40.6 bits), Expect = 0.00035, P = 0.00035
Identities = 22/60 (36%), Positives = 36/60 (60%)
Query: 20 YGFIRPDDGGADLFVHQKSIKSDGYR----TLYENQSVEFDVQLEADGKYQALDVTAPGG 75
YG++ + G D+FVHQ +IK + R T + ++VEFDV +E + +A ++ PGG
Sbjct: 42 YGYVGKNSSGNDVFVHQTAIKKNNPRKYLHTTGDRETVEFDV-IEGEKDAEAANIIGPGG 100
>UNIPROTKB|F1SN83 [details] [associations]
symbol:F1SN83 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313 PRINTS:PR00050
SMART:SM00357 GO:GO:0006355 GO:GO:0003677 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GeneTree:ENSGT00390000009256
EMBL:CU856056 EMBL:FP015901 Ensembl:ENSSSCT00000006028
Ensembl:ENSSSCT00000006029 Uniprot:F1SN83
Length = 299
Score = 101 (40.6 bits), Expect = 0.00078, P = 0.00078
Identities = 29/76 (38%), Positives = 42/76 (55%)
Query: 4 LTRSTGKVTWFDGAKGYGFIRPDDGGADLFVHQKSIKSDG---Y-RTLYENQSVEFDVQL 59
+ + G V F G GYGFI +D D+ VH +IK + Y RT + +++EFDV
Sbjct: 40 IAKKLGTVKCFSGRNGYGFINRNDTKEDVCVHT-AIKKNNPRKYLRTKGDGETMEFDVVG 98
Query: 60 EADGKYQALDVTAPGG 75
E G +A +VT+ GG
Sbjct: 99 EEAG--EAANVTSRGG 112
>UNIPROTKB|I3LAD3 [details] [associations]
symbol:I3LAD3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313 PRINTS:PR00050
SMART:SM00357 GO:GO:0006355 GO:GO:0003677 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GeneTree:ENSGT00390000009256
EMBL:CU856056 EMBL:FP015901 Ensembl:ENSSSCT00000023603
Ensembl:ENSSSCT00000025195 Uniprot:I3LAD3
Length = 315
Score = 101 (40.6 bits), Expect = 0.00086, P = 0.00086
Identities = 29/76 (38%), Positives = 42/76 (55%)
Query: 4 LTRSTGKVTWFDGAKGYGFIRPDDGGADLFVHQKSIKSDG---Y-RTLYENQSVEFDVQL 59
+ + G V F G GYGFI +D D+ VH +IK + Y RT + +++EFDV
Sbjct: 52 IAKKLGTVKCFSGRNGYGFINRNDTKEDVCVHT-AIKKNNPRKYLRTKGDGETMEFDVVG 110
Query: 60 EADGKYQALDVTAPGG 75
E G +A +VT+ GG
Sbjct: 111 EEAG--EAANVTSRGG 124
>ASPGD|ASPL0000040986 [details] [associations]
symbol:AN9093 species:162425 "Emericella nidulans"
[GO:0045727 "positive regulation of translation" evidence=IEA]
[GO:0003697 "single-stranded DNA binding" evidence=IEA] [GO:0003729
"mRNA binding" evidence=IEA] [GO:0045182 "translation regulator
activity" evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0042788 "polysomal ribosome" evidence=IEA]
[GO:0000932 "cytoplasmic mRNA processing body" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] InterPro:IPR001878
Pfam:PF00098 PROSITE:PS50158 SMART:SM00343 GO:GO:0046872
GO:GO:0008270 EMBL:BN001306 GO:GO:0003676 Gene3D:4.10.60.10
SUPFAM:SSF57756 HOGENOM:HOG000186262 EnsemblFungi:CADANIAT00009521
OMA:QAGHISR Uniprot:C8VH53
Length = 233
Score = 99 (39.9 bits), Expect = 0.00091, P = 0.00091
Identities = 21/68 (30%), Positives = 28/68 (41%)
Query: 190 CFKCGGYGHLARDCITXXXXXXXXXXXXXXXXXXHLARDCXXXXXXXXXS----CFNCGK 245
C+KCGG H ARDC H++RDC S C+ C +
Sbjct: 125 CYKCGGPNHFARDC------QAQAMKCYACGKLGHISRDCTAPNGGPLSSAGKVCYKCSQ 178
Query: 246 PGHFAREC 253
GH +R+C
Sbjct: 179 AGHISRDC 186
>TIGR_CMR|CPS_0148 [details] [associations]
symbol:CPS_0148 "cold-shock DNA-binding domain family
protein" species:167879 "Colwellia psychrerythraea 34H" [GO:0006355
"regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0009409 "response to cold" evidence=ISS] InterPro:IPR002059
InterPro:IPR011129 Pfam:PF00313 SMART:SM00357 GO:GO:0006355
GO:GO:0003677 EMBL:CP000083 GenomeReviews:CP000083_GR
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
RefSeq:YP_266916.1 ProteinModelPortal:Q48AJ7 STRING:Q48AJ7
DNASU:3522041 GeneID:3522041 KEGG:cps:CPS_0148 PATRIC:21463711
eggNOG:NOG243910 HOGENOM:HOG000267103 OMA:KFILWLT
BioCyc:CPSY167879:GI48-251-MONOMER InterPro:IPR010718 Pfam:PF06961
Uniprot:Q48AJ7
Length = 201
Score = 98 (39.6 bits), Expect = 0.00093, P = 0.00093
Identities = 23/69 (33%), Positives = 37/69 (53%)
Query: 6 RSTGKVTWFDGAKGYGFIRPDDGGADLFVHQKSIKSDGYRTLYENQSVEFDVQLEADGKY 65
R TGK+ ++ K +GFI P+ G +F+H+ ++K+ RT N + F V + G+Y
Sbjct: 2 RLTGKLIRWNTDKAFGFITPNGSGDTIFIHKTALKNRN-RTPKINDIISFSVIQDNQGRY 60
Query: 66 QALDVTAPG 74
A T G
Sbjct: 61 CADQATFAG 69
>ASPGD|ASPL0000008854 [details] [associations]
symbol:AN10761 species:162425 "Emericella nidulans"
[GO:0005575 "cellular_component" evidence=ND] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR002059
Pfam:PF00313 GO:GO:0006355 GO:GO:0003677 EMBL:BN001301
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
EnsemblFungi:CADANIAT00007080 Uniprot:C8V3H1
Length = 111
Score = 84 (34.6 bits), Expect = 0.00094, P = 0.00094
Identities = 20/55 (36%), Positives = 30/55 (54%)
Query: 2 AQLTRSTGKVTWFDGAKGYGFIRPDDGGADLFVHQKSIKSDGYRTLYENQSVEFD 56
A R G V W++ A+G+GFI D GG +L + ++SI R L E V ++
Sbjct: 42 ASPNRQFGTVKWYNDAQGFGFITSDFGG-ELILRRQSITEHTQR-LKEGMKVSYE 94
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.321 0.138 0.455 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 258 148 0.00068 104 3 11 22 0.46 31
30 0.39 34
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 175
No. of states in DFA: 589 (63 KB)
Total size of DFA: 154 KB (2091 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 11.45u 0.13s 11.58t Elapsed: 00:00:01
Total cpu time: 11.46u 0.13s 11.59t Elapsed: 00:00:01
Start: Fri May 10 20:07:47 2013 End: Fri May 10 20:07:48 2013
WARNINGS ISSUED: 1