CSDP1 protein (Arabidopsis thaliana)

STRING 9.05

CSDP1 protein (Arabidopsis thaliana) - STRING network view

This is the evidence view. Different line colors represent the types of evidence for the association.




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Your Input:
	CSDP1	CSDP1 (cold shock domain protein 1); RNA binding / double-stranded DNA binding / nucleic acid binding / single-stranded DNA binding; Encodes a cold shock domain protein. Involved in cold acclimation by blocking the secondary structure of mRNA which in turn facilitates translation at cold temperature. (299 aa)
		(Arabidopsis thaliana)
Predicted Functional Partners:
	SRZ-22	SRZ-22; protein binding; Encodes a Serine/arginine-rich (SR) protein RSZp22. SR proteins are sp [...] (200 aa)		•	•		•	0.943
	AT2G17870	cold-shock DNA-binding family protein; cold-shock DNA-binding family protein; FUNCTIONS IN- DNA [...] (301 aa)	•	•	•	•	•	0.928
	SmD3	SmD3 (snRNP core protein SmD3); snRNP core protein SmD3 (SmD3); FUNCTIONS IN- molecular_functio [...] (128 aa)		•	•			0.921
	NRPB12	NRPB12; DNA binding / DNA-directed RNA polymerase; Non-catalytic subunit common to nuclear DNA- [...] (51 aa)		•	•			0.918
	AT2G24590	splicing factor, putative; splicing factor, putative; FUNCTIONS IN- zinc ion binding, nucleotid [...] (196 aa)		•	•		•	0.916
	ATGRP2B	ATGRP2B (GLYCINE-RICH PROTEIN 2B); DNA binding / nucleic acid binding / zinc ion binding; glyci [...] (201 aa)	•		•	•	•	0.913
	GRP2	GRP2 (GLYCINE RICH PROTEIN 2); double-stranded DNA binding / mRNA binding / nucleic acid bindin [...] (203 aa)	•		•	•	•	0.912
	NRPB5	NRPB5; DNA binding / DNA-directed RNA polymerase; Non-catalytic subunit common to DNA-dependent [...] (205 aa)		•	•			0.912
	EMB2770	EMB2770 (EMBRYO DEFECTIVE 2770); RNA splicing factor, transesterification mechanism; Encodes a [...] (1029 aa)		•	•			0.909
	NRPB7	NRPB7; DNA-directed RNA polymerase/ RNA binding; Non-catalytic subunit specific to DNA-directed [...] (176 aa)		•	•			0.909

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Info & Parameters ...

Network Display - Nodes are either colored (if they are directly linked to the input - as in the table) or white (nodes of a higher iteration/depth). Edges, i.e. predicted functional links, consist of up to eight lines: one color for each type of evidence. Hover or click to reveal more information about the node/edge.

Active Prediction Methods:

Neighborhood Gene Fusion Co-occurrence
Co-expression Experiments Databases Textmining

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