BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047168
(258 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O65639|CSP1_ARATH Cold shock protein 1 OS=Arabidopsis thaliana GN=CSP1 PE=2 SV=1
Length = 299
Score = 177 bits (449), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 124/295 (42%), Positives = 151/295 (51%), Gaps = 48/295 (16%)
Query: 6 RSTGKVTWFDGAKGYGFIRPDDGGADLFVHQKSIKSDGYRTLYENQSVEFDVQLEADGKY 65
RSTGKV WF+ +KGYGFI PDDG +LFVHQ SI S+GYR+L +VEF + +DGK
Sbjct: 10 RSTGKVNWFNASKGYGFITPDDGSVELFVHQSSIVSEGYRSLTVGDAVEFAITQGSDGKT 69
Query: 66 QALDVTAPGGAPVHSSKNNNTNNNSGYNNNRGGRGGGGAGFGGYWKG-NNDSRRNNGGGY 124
+A++VTAPGG + K NN+ N G G K G
Sbjct: 70 KAVNVTAPGGGSL--KKENNSRGNGARRGGGGSGCYNCGELGHISKDCGIGGGGGGGERR 127
Query: 125 GPGGVVCYNCDGVGHVARECTS----NRRNSNYNNNSG---------------------- 158
GG CYNC GH AR+CTS ++R + N G
Sbjct: 128 SRGGEGCYNCGDTGHFARDCTSAGNGDQRGATKGGNDGCYTCGDVGHVARDCTQKSVGNG 187
Query: 159 -----------GCYNCGDPEHFARDCPRQQGGSNSYN--NNSGGCFKCGGYGHLARDCIT 205
GCY CGD HFARDC ++ N + SG C+ CGG GH+ARDC T
Sbjct: 188 DQRGAVKGGNDGCYTCGDVGHFARDCTQKVAAGNVRSGGGGSGTCYSCGGVGHIARDCAT 247
Query: 206 RGSGGGGGGRCYNCGKSGHLARDCGAGGAGGGG---SCFNCGKPGHFARECTKVA 257
+ G CY CG SGHLARDC G+GGGG +C+ CGK GHFAREC+ VA
Sbjct: 248 KRQPSRG---CYQCGGSGHLARDCDQRGSGGGGNDNACYKCGKEGHFARECSSVA 299
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/51 (54%), Positives = 34/51 (66%), Gaps = 8/51 (15%)
Query: 216 CYNCGKSGHLARDCGAGGAGGGGS--------CFNCGKPGHFARECTKVAN 258
CYNCG+ GH+++DCG GG GGGG C+NCG GHFAR+CT N
Sbjct: 102 CYNCGELGHISKDCGIGGGGGGGERRSRGGEGCYNCGDTGHFARDCTSAGN 152
>sp|Q94C69|CSP3_ARATH Cold shock domain-containing protein 3 OS=Arabidopsis thaliana
GN=CSP3 PE=2 SV=1
Length = 301
Score = 157 bits (398), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 127/296 (42%), Positives = 159/296 (53%), Gaps = 48/296 (16%)
Query: 6 RSTGKVTWFDGAKGYGFIRPDDGGADLFVHQKSIKSDGYRTLYENQSVEFDVQLEADGKY 65
RS GKV+WF KGYGFI PDDGG +LFVHQ SI SDG+R+L +SVE+++ L +DGK
Sbjct: 10 RSIGKVSWFSDGKGYGFITPDDGGEELFVHQSSIVSDGFRSLTLGESVEYEIALGSDGKT 69
Query: 66 QALDVTAPGGAPVHSSKNNNTNNNSGYNNNRGGRGGGGAG-------------------- 105
+A++VTAPGG ++ K N++ SG N G G A
Sbjct: 70 KAIEVTAPGGGSLN--KKENSSRGSGGNCFNCGEVGHMAKDCDGGSGGKSFGGGGGRRSG 127
Query: 106 ----------FGGYWKGNNDSRRNNGGGYGPGGVVCYNCDGVGHVAREC------TSNRR 149
G + + S N GG G GG CY+C VGH+A++C
Sbjct: 128 GEGECYMCGDVGHFARDCRQSGGGNSGGGGGGGRPCYSCGEVGHLAKDCRGGSGGNRYGG 187
Query: 150 NSNYNNNSGGCYNCGDPEHFARDCPRQQGGSNSYNNNSGGCFKCGGYGHLARDCITR-GS 208
+ GCY CG HFARDC +Q G + C+ CGG GH+A+ C ++ S
Sbjct: 188 GGGRGSGGDGCYMCGGVGHFARDC--RQNGGGNVGGGGSTCYTCGGVGHIAKVCTSKIPS 245
Query: 209 GGGGGGR-CYNCGKSGHLARDC------GAGGAGGGGSCFNCGKPGHFARECTKVA 257
GGGGGGR CY CG +GHLARDC +GG GG CF CGK GHFARECT VA
Sbjct: 246 GGGGGGRACYECGGTGHLARDCDRRGSGSSGGGGGSNKCFICGKEGHFARECTSVA 301
>sp|Q38896|CSP4_ARATH Cold shock domain-containing protein 4 OS=Arabidopsis thaliana
GN=CSP4 PE=1 SV=1
Length = 201
Score = 100 bits (250), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 72/183 (39%), Positives = 95/183 (51%), Gaps = 16/183 (8%)
Query: 6 RSTGKVTWFDGAKGYGFIRPDDGGADLFVHQKSIKSDGYRTLYENQSVEFDVQLEADGKY 65
R G V WFD KG+GFI P DGG DLFVHQ SI+S+G+R+L +SVEFDV+++ G+
Sbjct: 14 RRKGTVKWFDTQKGFGFITPSDGGDDLFVHQSSIRSEGFRSLAAEESVEFDVEVDNSGRP 73
Query: 66 QALDVTAPGGAPVHSSKNNNTNNNSGYNNNRGGRGGGGAGFGGYWKGNNDSRRNNGGGYG 125
+A++V+ P GAPV + ++ GG GGG G G Y G GG G
Sbjct: 74 KAIEVSGPDGAPVQGNSGGGGSSGGRGGFGGGGGRGGGRGGGSYGGGYGGRGSGGRGGGG 133
Query: 126 PGGVVCYNCDGVGHVARECTSNRRNSNYNNNSG---------------GCYNCGDPEHFA 170
C+ C GH+AREC+ + G CY+CG+ HFA
Sbjct: 134 GDN-SCFKCGEPGHMARECSQGGGGYSGGGGGGRYGSGGGGGGGGGGLSCYSCGESGHFA 192
Query: 171 RDC 173
RDC
Sbjct: 193 RDC 195
Score = 38.9 bits (89), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 31/59 (52%), Gaps = 20/59 (33%)
Query: 216 CYNCGKSGHLARDCGAGGAGGGG--------------------SCFNCGKPGHFARECT 254
C+ CG+ GH+AR+C GG G G SC++CG+ GHFAR+CT
Sbjct: 138 CFKCGEPGHMARECSQGGGGYSGGGGGGRYGSGGGGGGGGGGLSCYSCGESGHFARDCT 196
Score = 34.7 bits (78), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 12/17 (70%), Positives = 15/17 (88%)
Query: 239 SCFNCGKPGHFARECTK 255
SCF CG+PGH AREC++
Sbjct: 137 SCFKCGEPGHMARECSQ 153
>sp|Q04832|HEXP_LEIMA DNA-binding protein HEXBP OS=Leishmania major GN=HEXBP PE=4 SV=1
Length = 271
Score = 95.5 bits (236), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 59/147 (40%), Positives = 82/147 (55%), Gaps = 20/147 (13%)
Query: 128 GVVCYNCDGVGHVARECTSNRRNSN--YNNNSG------------GCYNCGDPEHFARDC 173
G CY C GH++R+C S++ S Y G CY CGD H +RDC
Sbjct: 96 GFECYKCGQEGHLSRDCPSSQGGSRGGYGQKRGRSGAQGGYSGDRTCYKCGDAGHISRDC 155
Query: 174 PRQQGGSNSYNNNSGGCFKCGGYGHLARDCI--TRGSGGGGGGRCYNCGKSGHLARDCGA 231
P QGG + + + C+KCG GH++RDC G G G +CY CG+SGH++R+C +
Sbjct: 156 PNGQGGYSGAGDRT--CYKCGDAGHISRDCPNGQGGYSGAGDRKCYKCGESGHMSRECPS 213
Query: 232 GGAGGGG--SCFNCGKPGHFARECTKV 256
G+ G G +C+ CGKPGH +REC +
Sbjct: 214 AGSTGSGDRACYKCGKPGHISRECPEA 240
Score = 85.5 bits (210), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 62/158 (39%), Positives = 82/158 (51%), Gaps = 13/158 (8%)
Query: 103 GAGFGGYWKGNNDSRRNNGGGYGPGGVVCYNCDGVGHVARECTSNRRNSNYNNNSGGCYN 162
G GGY G R GGY G CY C GH++R+C N + CY
Sbjct: 117 GGSRGGY--GQKRGRSGAQGGYS-GDRTCYKCGDAGHISRDCP-NGQGGYSGAGDRTCYK 172
Query: 163 CGDPEHFARDCPRQQGGSNSYNNNSGGCFKCGGYGHLARDCITRGSGGGGGGRCYNCGKS 222
CGD H +RDCP QGG + + C+KCG GH++R+C + GS G G CY CGK
Sbjct: 173 CGDAGHISRDCPNGQGGYSGAGDRK--CYKCGESGHMSRECPSAGSTGSGDRACYKCGKP 230
Query: 223 GHLARDCGAGGAGGGG-------SCFNCGKPGHFAREC 253
GH++R+C G GG +C+ CG+ GH +R+C
Sbjct: 231 GHISRECPEAGGSYGGSRGGGDRTCYKCGEAGHISRDC 268
Score = 77.0 bits (188), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/145 (34%), Positives = 68/145 (46%), Gaps = 25/145 (17%)
Query: 129 VVCYNCDGVGHVARECTSNRRNSNYNNNSGGCYNCGDPEHFARDCPRQQGGSNSYNNNSG 188
C NC GH AREC +S + S C+ CG+ H +R+CP + + S +
Sbjct: 16 TSCRNCGKEGHYARECPEA--DSKGDERSTTCFRCGEEGHMSRECPNE---ARSGAAGAM 70
Query: 189 GCFKCGGYGHLARDCITRGSGGGGGG-RCYNCGKSGHLARDC------------------ 229
CF+CG GH++RDC G G CY CG+ GHL+RDC
Sbjct: 71 TCFRCGEAGHMSRDCPNSAKPGAAKGFECYKCGQEGHLSRDCPSSQGGSRGGYGQKRGRS 130
Query: 230 -GAGGAGGGGSCFNCGKPGHFAREC 253
GG G +C+ CG GH +R+C
Sbjct: 131 GAQGGYSGDRTCYKCGDAGHISRDC 155
Score = 73.2 bits (178), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 58/104 (55%), Gaps = 7/104 (6%)
Query: 154 NNNSGGCYNCGDPEHFARDCPRQQGGSNSYNNNSGGCFKCGGYGHLARDCITRG-SGGGG 212
+S C NCG H+AR+CP + + S CF+CG GH++R+C SG G
Sbjct: 12 TESSTSCRNCGKEGHYARECPE---ADSKGDERSTTCFRCGEEGHMSRECPNEARSGAAG 68
Query: 213 GGRCYNCGKSGHLARDC---GAGGAGGGGSCFNCGKPGHFAREC 253
C+ CG++GH++RDC GA G C+ CG+ GH +R+C
Sbjct: 69 AMTCFRCGEAGHMSRDCPNSAKPGAAKGFECYKCGQEGHLSRDC 112
Score = 51.6 bits (122), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 41/79 (51%), Gaps = 4/79 (5%)
Query: 184 NNNSGGCFKCGGYGHLARDCITRGSGGGG-GGRCYNCGKSGHLARDC---GAGGAGGGGS 239
+S C CG GH AR+C S G C+ CG+ GH++R+C GA G +
Sbjct: 12 TESSTSCRNCGKEGHYARECPEADSKGDERSTTCFRCGEEGHMSRECPNEARSGAAGAMT 71
Query: 240 CFNCGKPGHFARECTKVAN 258
CF CG+ GH +R+C A
Sbjct: 72 CFRCGEAGHMSRDCPNSAK 90
Score = 38.5 bits (88), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 120 NGGGYGPGGVVCYNCDGVGHVARECTSNRRNSNYNNNSG--GCYNCGDPEHFARDCP 174
+ G G G CY C GH++REC + + G CY CG+ H +RDCP
Sbjct: 213 SAGSTGSGDRACYKCGKPGHISRECPEAGGSYGGSRGGGDRTCYKCGEAGHISRDCP 269
>sp|P36627|BYR3_SCHPO Cellular nucleic acid-binding protein homolog
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=byr3 PE=4 SV=1
Length = 179
Score = 83.6 bits (205), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 61/152 (40%), Positives = 70/152 (46%), Gaps = 38/152 (25%)
Query: 128 GVVCYNCDGVGHVARECTSNRRNSNYNNNSGGCYNCGDPEHFARDCPRQQGGSNSYNNNS 187
G +CYNC+ GH A ECT ++ CY CG H RDCP +S N
Sbjct: 35 GSICYNCNQTGHKASECTEPQQEKT-------CYACGTAGHLVRDCP------SSPNPRQ 81
Query: 188 GG-CFKCGGYGHLARDCITRG--SGGGGGGR-----CYNCGKSGHLARDCGAG------- 232
G C+KCG GH+ARDC T G SGG GG CY CG GH ARDC G
Sbjct: 82 GAECYKCGRVGHIARDCRTNGQQSGGRFGGHRSNMNCYACGSYGHQARDCTMGVKCYSCG 141
Query: 233 ----------GAGGGGSCFNCGKPGHFARECT 254
A G C+ C +PGH A CT
Sbjct: 142 KIGHRSFECQQASDGQLCYKCNQPGHIAVNCT 173
Score = 78.2 bits (191), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 64/153 (41%), Positives = 75/153 (49%), Gaps = 35/153 (22%)
Query: 128 GVVCYNCDGVGHVARECTSNRRNSNYNNNSGG--------------CYNCGDPEHFARDC 173
G CYNC GH ARECT + + YN N G CY CG H RDC
Sbjct: 16 GPRCYNCGENGHQARECT--KGSICYNCNQTGHKASECTEPQQEKTCYACGTAGHLVRDC 73
Query: 174 PRQQGGSNSYNNNSGG-CFKCGGYGHLARDCITRG--SGGGGGGR-----CYNCGKSGHL 225
P +S N G C+KCG GH+ARDC T G SGG GG CY CG GH
Sbjct: 74 P------SSPNPRQGAECYKCGRVGHIARDCRTNGQQSGGRFGGHRSNMNCYACGSYGHQ 127
Query: 226 ARDCGAGGAGGGGSCFNCGKPGHFARECTKVAN 258
ARDC G C++CGK GH + EC + ++
Sbjct: 128 ARDCTM-----GVKCYSCGKIGHRSFECQQASD 155
>sp|P53849|GIS2_YEAST Zinc finger protein GIS2 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=GIS2 PE=1 SV=1
Length = 153
Score = 78.6 bits (192), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 48/139 (34%), Positives = 70/139 (50%), Gaps = 23/139 (16%)
Query: 130 VCYNCDGVGHVARECTSNRR---NSNYNNNSGG----------CYNCGDPEHFARDCPRQ 176
+CYNC+ GHV +CT R YN G C+NC H +R+CP
Sbjct: 24 LCYNCNKPGHVQTDCTMPRTVEFKQCYNCGETGHVRSECTVQRCFNCNQTGHISRECPEP 83
Query: 177 QGGSNSYNNNSGGCFKCGGYGHLARDCITRGSGGGGGGRCYNCGKSGHLARDCGAGGAGG 236
+ S + C+KCGG H+A+DC+ G G +CY CG++GH++RDC
Sbjct: 84 KKTSRF---SKVSCYKCGGPNHMAKDCM--KEDGISGLKCYTCGQAGHMSRDC-----QN 133
Query: 237 GGSCFNCGKPGHFARECTK 255
C+NC + GH +++C K
Sbjct: 134 DRLCYNCNETGHISKDCPK 152
Score = 70.9 bits (172), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/136 (33%), Positives = 59/136 (43%), Gaps = 23/136 (16%)
Query: 131 CYNCDGVGHVARECTSNRRNSNYNNNSGGCYNCGDPEHFARDC--PRQQGGSNSYNNNSG 188
CY C +GH+A +C S R CYNC P H DC PR YN
Sbjct: 6 CYVCGKIGHLAEDCDSERL----------CYNCNKPGHVQTDCTMPRTVEFKQCYNCGET 55
Query: 189 G----------CFKCGGYGHLARDCIT-RGSGGGGGGRCYNCGKSGHLARDCGAGGAGGG 237
G CF C GH++R+C + + CY CG H+A+DC G
Sbjct: 56 GHVRSECTVQRCFNCNQTGHISRECPEPKKTSRFSKVSCYKCGGPNHMAKDCMKEDGISG 115
Query: 238 GSCFNCGKPGHFAREC 253
C+ CG+ GH +R+C
Sbjct: 116 LKCYTCGQAGHMSRDC 131
Score = 41.2 bits (95), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 23/39 (58%), Gaps = 5/39 (12%)
Query: 216 CYNCGKSGHLARDCGAGGAGGGGSCFNCGKPGHFARECT 254
CY CGK GHLA DC + C+NC KPGH +CT
Sbjct: 6 CYVCGKIGHLAEDCDSERL-----CYNCNKPGHVQTDCT 39
Score = 37.7 bits (86), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 10/51 (19%)
Query: 125 GPGGVVCYNCDGVGHVARECTSNRRNSNYNNNSGGCYNCGDPEHFARDCPR 175
G G+ CY C GH++R+C ++R CYNC + H ++DCP+
Sbjct: 112 GISGLKCYTCGQAGHMSRDCQNDRL----------CYNCNETGHISKDCPK 152
>sp|P53996|CNBP_MOUSE Cellular nucleic acid-binding protein OS=Mus musculus GN=Cnbp PE=2
SV=2
Length = 178
Score = 77.4 bits (189), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/129 (35%), Positives = 64/129 (49%), Gaps = 25/129 (19%)
Query: 130 VCYNCDGVGHVARECTSNRRNSNYNNNSGGCYNCGDPEHFARDCPRQQGGSNSYNNNSGG 189
CYNC GH+A++C +R CYNCG P H ARDC + +
Sbjct: 74 ACYNCGRGGHIAKDCKEPKRE-----REQCCYNCGKPGHLARDCD---------HADEQK 119
Query: 190 CFKCGGYGHLARDCITRGSGGGGGGRCYNCGKSGHLARDCGAGGAGGGGSCFNCGKPGHF 249
C+ CG +GH+ +DC +CY CG++GH+A +C +C+ CG+ GH
Sbjct: 120 CYSCGEFGHIQKDCTK--------VKCYRCGETGHVAINCSKTSEV---NCYRCGESGHL 168
Query: 250 ARECTKVAN 258
ARECT A
Sbjct: 169 ARECTIEAT 177
Score = 67.4 bits (163), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 56/116 (48%), Gaps = 23/116 (19%)
Query: 156 NSGGCYNCGDPEHFARDCPR------------------QQGGSNSYNNNSGGCFKCGGYG 197
+S C+ CG H+AR+CP +G ++ C++CG G
Sbjct: 2 SSNECFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGESG 61
Query: 198 HLARDCITRGSGGGGGGRCYNCGKSGHLARDCGAGGAGGGGSCFNCGKPGHFAREC 253
HLA+DC + CYNCG+ GH+A+DC C+NCGKPGH AR+C
Sbjct: 62 HLAKDCDLQEDEA-----CYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDC 112
Score = 65.9 bits (159), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 49/145 (33%), Positives = 67/145 (46%), Gaps = 33/145 (22%)
Query: 131 CYNCDGVGHVARECTS-----------------NRRNSNYNNNS--GGCYNCGDPEHFAR 171
C+ C GH AREC + + R + ++S CY CG+ H A+
Sbjct: 6 CFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGESGHLAK 65
Query: 172 DCPRQQGGSNSYNNNSGGCFKCGGYGHLARDCITRGSGGGGGGRCYNCGKSGHLARDCGA 231
DC Q+ C+ CG GH+A+DC + CYNCGK GHLARDC
Sbjct: 66 DCDLQE---------DEACYNCGRGGHIAKDC--KEPKREREQCCYNCGKPGHLARDCDH 114
Query: 232 GGAGGGGSCFNCGKPGHFARECTKV 256
C++CG+ GH ++CTKV
Sbjct: 115 ADE---QKCYSCGEFGHIQKDCTKV 136
>sp|P62634|CNBP_RAT Cellular nucleic acid-binding protein OS=Rattus norvegicus GN=Cnbp
PE=2 SV=1
Length = 177
Score = 77.0 bits (188), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/129 (35%), Positives = 64/129 (49%), Gaps = 25/129 (19%)
Query: 130 VCYNCDGVGHVARECTSNRRNSNYNNNSGGCYNCGDPEHFARDCPRQQGGSNSYNNNSGG 189
CYNC GH+A++C +R CYNCG P H ARDC + +
Sbjct: 73 ACYNCGRGGHIAKDCKEPKRE-----REQCCYNCGKPGHLARDCD---------HADEQK 118
Query: 190 CFKCGGYGHLARDCITRGSGGGGGGRCYNCGKSGHLARDCGAGGAGGGGSCFNCGKPGHF 249
C+ CG +GH+ +DC +CY CG++GH+A +C +C+ CG+ GH
Sbjct: 119 CYSCGEFGHIQKDCTK--------VKCYRCGETGHVAINCSKTSEV---NCYRCGESGHL 167
Query: 250 ARECTKVAN 258
ARECT A
Sbjct: 168 ARECTIEAT 176
Score = 67.4 bits (163), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 56/116 (48%), Gaps = 24/116 (20%)
Query: 156 NSGGCYNCGDPEHFARDCPR------------------QQGGSNSYNNNSGGCFKCGGYG 197
+S C+ CG H+AR+CP +G ++ C++CG G
Sbjct: 2 SSNECFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGESG 61
Query: 198 HLARDCITRGSGGGGGGRCYNCGKSGHLARDCGAGGAGGGGSCFNCGKPGHFAREC 253
HLA+DC + CYNCG+ GH+A+DC C+NCGKPGH AR+C
Sbjct: 62 HLAKDCDLQEDA------CYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDC 111
Score = 65.9 bits (159), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 49/145 (33%), Positives = 67/145 (46%), Gaps = 34/145 (23%)
Query: 131 CYNCDGVGHVARECTS-----------------NRRNSNYNNNS--GGCYNCGDPEHFAR 171
C+ C GH AREC + + R + ++S CY CG+ H A+
Sbjct: 6 CFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGESGHLAK 65
Query: 172 DCPRQQGGSNSYNNNSGGCFKCGGYGHLARDCITRGSGGGGGGRCYNCGKSGHLARDCGA 231
DC Q+ C+ CG GH+A+DC + CYNCGK GHLARDC
Sbjct: 66 DCDLQEDA----------CYNCGRGGHIAKDC--KEPKREREQCCYNCGKPGHLARDCDH 113
Query: 232 GGAGGGGSCFNCGKPGHFARECTKV 256
C++CG+ GH ++CTKV
Sbjct: 114 ADE---QKCYSCGEFGHIQKDCTKV 135
>sp|Q5R5R5|CNBP_PONAB Cellular nucleic acid-binding protein OS=Pongo abelii GN=CNBP PE=2
SV=1
Length = 177
Score = 77.0 bits (188), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/129 (35%), Positives = 64/129 (49%), Gaps = 25/129 (19%)
Query: 130 VCYNCDGVGHVARECTSNRRNSNYNNNSGGCYNCGDPEHFARDCPRQQGGSNSYNNNSGG 189
CYNC GH+A++C +R CYNCG P H ARDC + +
Sbjct: 73 ACYNCGRGGHIAKDCKEPKRE-----REQCCYNCGKPGHLARDCD---------HADEQK 118
Query: 190 CFKCGGYGHLARDCITRGSGGGGGGRCYNCGKSGHLARDCGAGGAGGGGSCFNCGKPGHF 249
C+ CG +GH+ +DC +CY CG++GH+A +C +C+ CG+ GH
Sbjct: 119 CYSCGEFGHIQKDCTK--------VKCYRCGETGHVAINCSKTSEV---NCYRCGESGHL 167
Query: 250 ARECTKVAN 258
ARECT A
Sbjct: 168 ARECTIEAT 176
Score = 67.4 bits (163), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 56/116 (48%), Gaps = 24/116 (20%)
Query: 156 NSGGCYNCGDPEHFARDCPR------------------QQGGSNSYNNNSGGCFKCGGYG 197
+S C+ CG H+AR+CP +G ++ C++CG G
Sbjct: 2 SSNECFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGESG 61
Query: 198 HLARDCITRGSGGGGGGRCYNCGKSGHLARDCGAGGAGGGGSCFNCGKPGHFAREC 253
HLA+DC + CYNCG+ GH+A+DC C+NCGKPGH AR+C
Sbjct: 62 HLAKDCDLQEDA------CYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDC 111
Score = 65.9 bits (159), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 49/145 (33%), Positives = 67/145 (46%), Gaps = 34/145 (23%)
Query: 131 CYNCDGVGHVARECTS-----------------NRRNSNYNNNS--GGCYNCGDPEHFAR 171
C+ C GH AREC + + R + ++S CY CG+ H A+
Sbjct: 6 CFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGESGHLAK 65
Query: 172 DCPRQQGGSNSYNNNSGGCFKCGGYGHLARDCITRGSGGGGGGRCYNCGKSGHLARDCGA 231
DC Q+ C+ CG GH+A+DC + CYNCGK GHLARDC
Sbjct: 66 DCDLQEDA----------CYNCGRGGHIAKDC--KEPKREREQCCYNCGKPGHLARDCDH 113
Query: 232 GGAGGGGSCFNCGKPGHFARECTKV 256
C++CG+ GH ++CTKV
Sbjct: 114 ADE---QKCYSCGEFGHIQKDCTKV 135
>sp|P62633|CNBP_HUMAN Cellular nucleic acid-binding protein OS=Homo sapiens GN=CNBP PE=1
SV=1
Length = 177
Score = 77.0 bits (188), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/129 (35%), Positives = 64/129 (49%), Gaps = 25/129 (19%)
Query: 130 VCYNCDGVGHVARECTSNRRNSNYNNNSGGCYNCGDPEHFARDCPRQQGGSNSYNNNSGG 189
CYNC GH+A++C +R CYNCG P H ARDC + +
Sbjct: 73 ACYNCGRGGHIAKDCKEPKRE-----REQCCYNCGKPGHLARDCD---------HADEQK 118
Query: 190 CFKCGGYGHLARDCITRGSGGGGGGRCYNCGKSGHLARDCGAGGAGGGGSCFNCGKPGHF 249
C+ CG +GH+ +DC +CY CG++GH+A +C +C+ CG+ GH
Sbjct: 119 CYSCGEFGHIQKDCTK--------VKCYRCGETGHVAINCSKTSEV---NCYRCGESGHL 167
Query: 250 ARECTKVAN 258
ARECT A
Sbjct: 168 ARECTIEAT 176
Score = 67.4 bits (163), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 56/116 (48%), Gaps = 24/116 (20%)
Query: 156 NSGGCYNCGDPEHFARDCPR------------------QQGGSNSYNNNSGGCFKCGGYG 197
+S C+ CG H+AR+CP +G ++ C++CG G
Sbjct: 2 SSNECFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGESG 61
Query: 198 HLARDCITRGSGGGGGGRCYNCGKSGHLARDCGAGGAGGGGSCFNCGKPGHFAREC 253
HLA+DC + CYNCG+ GH+A+DC C+NCGKPGH AR+C
Sbjct: 62 HLAKDCDLQEDA------CYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDC 111
Score = 65.9 bits (159), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 49/145 (33%), Positives = 67/145 (46%), Gaps = 34/145 (23%)
Query: 131 CYNCDGVGHVARECTS-----------------NRRNSNYNNNS--GGCYNCGDPEHFAR 171
C+ C GH AREC + + R + ++S CY CG+ H A+
Sbjct: 6 CFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGESGHLAK 65
Query: 172 DCPRQQGGSNSYNNNSGGCFKCGGYGHLARDCITRGSGGGGGGRCYNCGKSGHLARDCGA 231
DC Q+ C+ CG GH+A+DC + CYNCGK GHLARDC
Sbjct: 66 DCDLQEDA----------CYNCGRGGHIAKDC--KEPKREREQCCYNCGKPGHLARDCDH 113
Query: 232 GGAGGGGSCFNCGKPGHFARECTKV 256
C++CG+ GH ++CTKV
Sbjct: 114 ADE---QKCYSCGEFGHIQKDCTKV 135
>sp|O42395|CNBP_CHICK Cellular nucleic acid-binding protein OS=Gallus gallus GN=CNBP PE=2
SV=1
Length = 172
Score = 77.0 bits (188), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/129 (35%), Positives = 64/129 (49%), Gaps = 25/129 (19%)
Query: 130 VCYNCDGVGHVARECTSNRRNSNYNNNSGGCYNCGDPEHFARDCPRQQGGSNSYNNNSGG 189
CYNC GH+A++C +R CYNCG P H ARDC + +
Sbjct: 68 ACYNCGRGGHIAKDCKEPKRE-----REQCCYNCGKPGHLARDCD---------HADEQK 113
Query: 190 CFKCGGYGHLARDCITRGSGGGGGGRCYNCGKSGHLARDCGAGGAGGGGSCFNCGKPGHF 249
C+ CG +GH+ +DC +CY CG++GH+A +C +C+ CG+ GH
Sbjct: 114 CYSCGEFGHIQKDCTK--------VKCYRCGETGHVAINCSKTSEV---NCYRCGESGHL 162
Query: 250 ARECTKVAN 258
ARECT A
Sbjct: 163 ARECTIEAT 171
Score = 69.3 bits (168), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 42/113 (37%), Positives = 57/113 (50%), Gaps = 23/113 (20%)
Query: 156 NSGGCYNCGDPEHFARDCPRQ---------------QGGSNSYNNNSGGCFKCGGYGHLA 200
+S C+ CG H+AR+CP Q S+S + C++CG GHLA
Sbjct: 2 SSNECFKCGRTGHWARECPTGIGRGRGMRSRGRAGFQFMSSSLPDI---CYRCGESGHLA 58
Query: 201 RDCITRGSGGGGGGRCYNCGKSGHLARDCGAGGAGGGGSCFNCGKPGHFAREC 253
+DC + CYNCG+ GH+A+DC C+NCGKPGH AR+C
Sbjct: 59 KDCDLQEDKA-----CYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDC 106
Score = 68.2 bits (165), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 48/139 (34%), Positives = 63/139 (45%), Gaps = 27/139 (19%)
Query: 131 CYNCDGVGHVARECTSNRRNSNYNNNSGG-------------CYNCGDPEHFARDCPRQQ 177
C+ C GH AREC + + G CY CG+ H A+DC Q+
Sbjct: 6 CFKCGRTGHWARECPTGIGRGRGMRSRGRAGFQFMSSSLPDICYRCGESGHLAKDCDLQE 65
Query: 178 GGSNSYNNNSGGCFKCGGYGHLARDCITRGSGGGGGGRCYNCGKSGHLARDCGAGGAGGG 237
C+ CG GH+A+DC + CYNCGK GHLARDC
Sbjct: 66 ---------DKACYNCGRGGHIAKDC--KEPKREREQCCYNCGKPGHLARDCDHADE--- 111
Query: 238 GSCFNCGKPGHFARECTKV 256
C++CG+ GH ++CTKV
Sbjct: 112 QKCYSCGEFGHIQKDCTKV 130
>sp|Q3T0Q6|CNBP_BOVIN Cellular nucleic acid-binding protein OS=Bos taurus GN=CNBP PE=2
SV=1
Length = 170
Score = 77.0 bits (188), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/129 (35%), Positives = 64/129 (49%), Gaps = 25/129 (19%)
Query: 130 VCYNCDGVGHVARECTSNRRNSNYNNNSGGCYNCGDPEHFARDCPRQQGGSNSYNNNSGG 189
CYNC GH+A++C +R CYNCG P H ARDC + +
Sbjct: 66 ACYNCGRGGHIAKDCKEPKRE-----REQCCYNCGKPGHLARDCD---------HADEQK 111
Query: 190 CFKCGGYGHLARDCITRGSGGGGGGRCYNCGKSGHLARDCGAGGAGGGGSCFNCGKPGHF 249
C+ CG +GH+ +DC +CY CG++GH+A +C +C+ CG+ GH
Sbjct: 112 CYSCGEFGHIQKDCTK--------VKCYRCGETGHVAINCSKTSEV---NCYRCGESGHL 160
Query: 250 ARECTKVAN 258
ARECT A
Sbjct: 161 ARECTIEAT 169
Score = 69.3 bits (168), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 41/109 (37%), Positives = 55/109 (50%), Gaps = 17/109 (15%)
Query: 156 NSGGCYNCGDPEHFARDCPRQQGGSNSYNNNSGG-----------CFKCGGYGHLARDCI 204
+S C+ CG H+AR+CP G + G C++CG GHLA+DC
Sbjct: 2 SSNECFKCGRSGHWARECPTGGGRGRGMRSRGRGFQFVSSSLPDICYRCGESGHLAKDCD 61
Query: 205 TRGSGGGGGGRCYNCGKSGHLARDCGAGGAGGGGSCFNCGKPGHFAREC 253
+ CYNCG+ GH+A+DC C+NCGKPGH AR+C
Sbjct: 62 LQEDA------CYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDC 104
Score = 67.4 bits (163), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 48/138 (34%), Positives = 63/138 (45%), Gaps = 27/138 (19%)
Query: 131 CYNCDGVGHVARECTSNRRNSNYNNNSGG------------CYNCGDPEHFARDCPRQQG 178
C+ C GH AREC + + G CY CG+ H A+DC Q+
Sbjct: 6 CFKCGRSGHWARECPTGGGRGRGMRSRGRGFQFVSSSLPDICYRCGESGHLAKDCDLQED 65
Query: 179 GSNSYNNNSGGCFKCGGYGHLARDCITRGSGGGGGGRCYNCGKSGHLARDCGAGGAGGGG 238
C+ CG GH+A+DC + CYNCGK GHLARDC
Sbjct: 66 A----------CYNCGRGGHIAKDC--KEPKREREQCCYNCGKPGHLARDCDHADE---Q 110
Query: 239 SCFNCGKPGHFARECTKV 256
C++CG+ GH ++CTKV
Sbjct: 111 KCYSCGEFGHIQKDCTKV 128
Score = 65.1 bits (157), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 59/129 (45%), Gaps = 26/129 (20%)
Query: 130 VCYNCDGVGHVARECTSNRRNSNYNNNSGGCYNCGDPEHFARDCPRQQGGSNSYNNNSGG 189
+CY C GH+A++C + CYNCG H A+DC +
Sbjct: 46 ICYRCGESGHLAKDC---------DLQEDACYNCGRGGHIAKDCKEPK------REREQC 90
Query: 190 CFKCGGYGHLARDCITRGSGGGGGGRCYNCGKSGHLARDCGAGGAGGGGSCFNCGKPGHF 249
C+ CG GHLARDC +CY+CG+ GH+ +DC C+ CG+ GH
Sbjct: 91 CYNCGKPGHLARDC-----DHADEQKCYSCGEFGHIQKDCTKV------KCYRCGETGHV 139
Query: 250 ARECTKVAN 258
A C+K +
Sbjct: 140 AINCSKTSE 148
Score = 31.2 bits (69), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 23/45 (51%), Gaps = 8/45 (17%)
Query: 129 VVCYNCDGVGHVARECTSNRRNSNYNNNSGGCYNCGDPEHFARDC 173
V CY C GHVA C+ + S N CY CG+ H AR+C
Sbjct: 128 VKCYRCGETGHVAINCS---KTSEVN-----CYRCGESGHLAREC 164
>sp|Q6ZN17|LN28B_HUMAN Protein lin-28 homolog B OS=Homo sapiens GN=LIN28B PE=1 SV=1
Length = 250
Score = 73.2 bits (178), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 74/180 (41%), Gaps = 46/180 (25%)
Query: 2 AQLTRSTGKVTWFDGAKGYGFIR-------PDDGGADLFVHQKSIKSDGYRTLYENQSVE 54
+Q+ R TG WF+ G+GFI P D D+FVHQ + +G+R+L E + VE
Sbjct: 25 SQVLRGTGHCKWFNVRMGFGFISMINREGSPLDIPVDVFVHQSKLFMEGFRSLKEGEPVE 84
Query: 55 FDVQLEADGKYQALDVTAPGGAPVHSSKNNNTNNNSGYNNNRGGRGGGGAGFGGYWKGNN 114
F + + G +++ VT PGG+P S+ KG
Sbjct: 85 FTFKKSSKG-LESIRVTGPGGSPCLGSERRP-------------------------KGKT 118
Query: 115 DSRRNNGGGYGPGGVVCYNCDGVGHVARECTSNRRNSNYNNNSGGCYNCGDPEHFARDCP 174
+R P G CYNC G+ H A+EC+ C+ C H +CP
Sbjct: 119 LQKRK------PKGDRCYNCGGLDHHAKECS-------LPPQPKKCHYCQSIMHMVANCP 165
>sp|Q8AVK2|LN28B_XENLA Protein lin-28 homolog B (Fragment) OS=Xenopus laevis GN=lin28b
PE=2 SV=1
Length = 252
Score = 69.7 bits (169), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 69/180 (38%), Gaps = 46/180 (25%)
Query: 2 AQLTRSTGKVTWFDGAKGYGFIR-------PDDGGADLFVHQKSIKSDGYRTLYENQSVE 54
Q+ +G WF+ G+GFI P + D+FVHQ + DG+R+L E + VE
Sbjct: 28 PQVLLGSGHCKWFNVRMGFGFISMTSREGSPLENPVDVFVHQSKLYMDGFRSLKEGEPVE 87
Query: 55 FDVQLEADGKYQALDVTAPGGAPVHSSKNNNTNNNSGYNNNRGGRGGGGAGFGGYWKGNN 114
F + + G +++L VT PGG P S+ +G R
Sbjct: 88 FTFKKSSKG-FESLRVTGPGGNPCLGSERRPKAKTVQKRKPKGDR--------------- 131
Query: 115 DSRRNNGGGYGPGGVVCYNCDGVGHVARECTSNRRNSNYNNNSGGCYNCGDPEHFARDCP 174
CYNC G+ H A+EC N C+ C H +CP
Sbjct: 132 ----------------CYNCGGLDHHAKEC-------NLPPQPKKCHYCQSTMHMVANCP 168
>sp|Q45KJ6|LN28B_MOUSE Protein lin-28 homolog B OS=Mus musculus GN=Lin28b PE=2 SV=2
Length = 247
Score = 69.7 bits (169), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 72/182 (39%), Gaps = 46/182 (25%)
Query: 2 AQLTRSTGKVTWFDGAKGYGFIR-------PDDGGADLFVHQKSIKSDGYRTLYENQSVE 54
Q+ TG WF+ G+GFI P D D+FVHQ + +G+R+L E + VE
Sbjct: 23 PQVLHGTGHCKWFNVRMGFGFISMISREGNPLDIPVDVFVHQSKLFMEGFRSLKEGEPVE 82
Query: 55 FDVQLEADGKYQALDVTAPGGAPVHSSKNNNTNNNSGYNNNRGGRGGGGAGFGGYWKGNN 114
F + G +++ VT PGG+P S+ KG
Sbjct: 83 FTFKKSPKG-LESIRVTGPGGSPCLGSERRP-------------------------KGKT 116
Query: 115 DSRRNNGGGYGPGGVVCYNCDGVGHVARECTSNRRNSNYNNNSGGCYNCGDPEHFARDCP 174
+R P G CYNC G+ H A+EC+ C+ C H +CP
Sbjct: 117 LQKRK------PKGDRCYNCGGLDHHAKECS-------LPPQPKKCHYCQSIMHMVANCP 163
Query: 175 RQ 176
+
Sbjct: 164 HK 165
>sp|P0CL01|CSPJ_SALTY Cold shock-like protein CspJ OS=Salmonella typhimurium (strain
LT2 / SGSC1412 / ATCC 700720) GN=cspJ PE=3 SV=1
Length = 70
Score = 69.3 bits (168), Expect = 3e-11, Method: Composition-based stats.
Identities = 34/68 (50%), Positives = 45/68 (66%), Gaps = 1/68 (1%)
Query: 5 TRSTGKVTWFDGAKGYGFIRPDDGGADLFVHQKSIKSDGYRTLYENQSVEFDVQLEADGK 64
T+ TG V WF+ KG+GFI P DG D+FVH +I+S+ +RTL ENQ VEF V+ G
Sbjct: 3 TKITGLVKWFNPEKGFGFITPKDGSKDVFVHFSAIQSNEFRTLNENQEVEFSVEQGPKGP 62
Query: 65 YQALDVTA 72
A++V A
Sbjct: 63 -SAVNVVA 69
>sp|E1WGN1|CSPJ_SALTS Cold shock-like protein CspJ OS=Salmonella typhimurium (strain
SL1344) GN=cspJ PE=2 SV=1
Length = 70
Score = 69.3 bits (168), Expect = 3e-11, Method: Composition-based stats.
Identities = 34/68 (50%), Positives = 45/68 (66%), Gaps = 1/68 (1%)
Query: 5 TRSTGKVTWFDGAKGYGFIRPDDGGADLFVHQKSIKSDGYRTLYENQSVEFDVQLEADGK 64
T+ TG V WF+ KG+GFI P DG D+FVH +I+S+ +RTL ENQ VEF V+ G
Sbjct: 3 TKITGLVKWFNPEKGFGFITPKDGSKDVFVHFSAIQSNEFRTLNENQEVEFSVEQGPKGP 62
Query: 65 YQALDVTA 72
A++V A
Sbjct: 63 -SAVNVVA 69
>sp|P0A981|CSPG_SHIFL Cold shock-like protein CspG OS=Shigella flexneri GN=cspG PE=3
SV=1
Length = 70
Score = 67.4 bits (163), Expect = 9e-11, Method: Composition-based stats.
Identities = 33/66 (50%), Positives = 43/66 (65%)
Query: 6 RSTGKVTWFDGAKGYGFIRPDDGGADLFVHQKSIKSDGYRTLYENQSVEFDVQLEADGKY 65
+ TG V WF+ KG+GFI PDDG D+FVH +I+S+ +RTL ENQ VEF ++ G
Sbjct: 4 KMTGLVKWFNADKGFGFITPDDGSKDVFVHFTAIQSNEFRTLNENQKVEFSIEQGQRGPA 63
Query: 66 QALDVT 71
A VT
Sbjct: 64 AANVVT 69
>sp|P0A978|CSPG_ECOLI Cold shock-like protein CspG OS=Escherichia coli (strain K12)
GN=cspG PE=1 SV=1
Length = 70
Score = 67.4 bits (163), Expect = 9e-11, Method: Composition-based stats.
Identities = 33/66 (50%), Positives = 43/66 (65%)
Query: 6 RSTGKVTWFDGAKGYGFIRPDDGGADLFVHQKSIKSDGYRTLYENQSVEFDVQLEADGKY 65
+ TG V WF+ KG+GFI PDDG D+FVH +I+S+ +RTL ENQ VEF ++ G
Sbjct: 4 KMTGLVKWFNADKGFGFITPDDGSKDVFVHFTAIQSNEFRTLNENQKVEFSIEQGQRGPA 63
Query: 66 QALDVT 71
A VT
Sbjct: 64 AANVVT 69
>sp|P0A979|CSPG_ECOL6 Cold shock-like protein CspG OS=Escherichia coli O6:H1 (strain
CFT073 / ATCC 700928 / UPEC) GN=cspG PE=3 SV=1
Length = 70
Score = 67.4 bits (163), Expect = 9e-11, Method: Composition-based stats.
Identities = 33/66 (50%), Positives = 43/66 (65%)
Query: 6 RSTGKVTWFDGAKGYGFIRPDDGGADLFVHQKSIKSDGYRTLYENQSVEFDVQLEADGKY 65
+ TG V WF+ KG+GFI PDDG D+FVH +I+S+ +RTL ENQ VEF ++ G
Sbjct: 4 KMTGLVKWFNADKGFGFITPDDGSKDVFVHFTAIQSNEFRTLNENQKVEFSIEQGQRGPA 63
Query: 66 QALDVT 71
A VT
Sbjct: 64 AANVVT 69
>sp|P0A980|CSPG_ECO57 Cold shock-like protein CspG OS=Escherichia coli O157:H7 GN=cspG
PE=3 SV=1
Length = 70
Score = 67.4 bits (163), Expect = 9e-11, Method: Composition-based stats.
Identities = 33/66 (50%), Positives = 43/66 (65%)
Query: 6 RSTGKVTWFDGAKGYGFIRPDDGGADLFVHQKSIKSDGYRTLYENQSVEFDVQLEADGKY 65
+ TG V WF+ KG+GFI PDDG D+FVH +I+S+ +RTL ENQ VEF ++ G
Sbjct: 4 KMTGLVKWFNADKGFGFITPDDGSKDVFVHFTAIQSNEFRTLNENQKVEFSIEQGQRGPA 63
Query: 66 QALDVT 71
A VT
Sbjct: 64 AANVVT 69
>sp|P58726|CSPJ_SALTI Cold shock-like protein CspJ OS=Salmonella typhi GN=cspJ PE=3
SV=1
Length = 70
Score = 67.0 bits (162), Expect = 1e-10, Method: Composition-based stats.
Identities = 33/68 (48%), Positives = 44/68 (64%), Gaps = 1/68 (1%)
Query: 5 TRSTGKVTWFDGAKGYGFIRPDDGGADLFVHQKSIKSDGYRTLYENQSVEFDVQLEADGK 64
T+ TG V WF+ KG+GFI P DG D+FVH +I+S+ +RTL ENQ VEF + G
Sbjct: 3 TKITGLVKWFNPEKGFGFITPKDGSKDVFVHFSAIQSNEFRTLNENQEVEFSAEQGPKGP 62
Query: 65 YQALDVTA 72
A++V A
Sbjct: 63 -SAVNVVA 69
>sp|Q45KJ4|LN28B_CHICK Protein lin-28 homolog B OS=Gallus gallus GN=LIN28B PE=2 SV=1
Length = 250
Score = 67.0 bits (162), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 68/169 (40%), Gaps = 46/169 (27%)
Query: 13 WFDGAKGYGFIR-------PDDGGADLFVHQKSIKSDGYRTLYENQSVEFDVQLEADGKY 65
WF+ G+GFI P + D+FVHQ + +G+R+L E + VEF + + G
Sbjct: 36 WFNVRMGFGFISMSSREGSPLESPVDVFVHQSKLYMEGFRSLKEGEPVEFTYKKSSKG-L 94
Query: 66 QALDVTAPGGAPVHSSKNNNTNNNSGYNNNRGGRGGGGAGFGGYWKGNNDSRRNNGGGYG 125
+++ VT PGG+P S+ KG +R
Sbjct: 95 ESIRVTGPGGSPCLGSERRP-------------------------KGKTVQKRK------ 123
Query: 126 PGGVVCYNCDGVGHVARECTSNRRNSNYNNNSGGCYNCGDPEHFARDCP 174
P G CYNC G+ H A+EC+ C+ C H +CP
Sbjct: 124 PKGDRCYNCGGLDHHAKECS-------LPPQPKKCHYCQSIMHMVANCP 165
>sp|P63238|CSPE_BUCAP Cold shock-like protein CspE OS=Buchnera aphidicola subsp.
Schizaphis graminum (strain Sg) GN=cspE PE=3 SV=2
Length = 69
Score = 65.9 bits (159), Expect = 3e-10, Method: Composition-based stats.
Identities = 30/64 (46%), Positives = 45/64 (70%)
Query: 4 LTRSTGKVTWFDGAKGYGFIRPDDGGADLFVHQKSIKSDGYRTLYENQSVEFDVQLEADG 63
+++ G V WF+ +KG+GFI P+DG D+FVH +I+S+G++TL E QSVEF++ A G
Sbjct: 1 MSKIKGNVKWFNESKGFGFITPEDGSKDVFVHFSAIQSNGFKTLAEGQSVEFEITEGAKG 60
Query: 64 KYQA 67
A
Sbjct: 61 PSAA 64
>sp|P63237|CSPE_BUCAI Cold shock-like protein CspE OS=Buchnera aphidicola subsp.
Acyrthosiphon pisum (strain APS) GN=cspE PE=3 SV=2
Length = 69
Score = 65.9 bits (159), Expect = 3e-10, Method: Composition-based stats.
Identities = 30/64 (46%), Positives = 45/64 (70%)
Query: 4 LTRSTGKVTWFDGAKGYGFIRPDDGGADLFVHQKSIKSDGYRTLYENQSVEFDVQLEADG 63
+++ G V WF+ +KG+GFI P+DG D+FVH +I+S+G++TL E QSVEF++ A G
Sbjct: 1 MSKIKGNVKWFNESKGFGFITPEDGSKDVFVHFSAIQSNGFKTLAEGQSVEFEITEGAKG 60
Query: 64 KYQA 67
A
Sbjct: 61 PSAA 64
>sp|Q89A90|CSPE_BUCBP Cold shock-like protein CspE OS=Buchnera aphidicola subsp.
Baizongia pistaciae (strain Bp) GN=cspE PE=3 SV=3
Length = 69
Score = 65.5 bits (158), Expect = 4e-10, Method: Composition-based stats.
Identities = 30/64 (46%), Positives = 45/64 (70%)
Query: 4 LTRSTGKVTWFDGAKGYGFIRPDDGGADLFVHQKSIKSDGYRTLYENQSVEFDVQLEADG 63
+++ G V WF+ +KG+GFI P+DG D+FVH +I+S+G++TL E QSVEF++ A G
Sbjct: 1 MSKIKGNVKWFNESKGFGFITPEDGSKDVFVHFSAIQSNGFKTLSEGQSVEFEITEGAKG 60
Query: 64 KYQA 67
A
Sbjct: 61 PSAA 64
>sp|A0R5E1|CSPA_MYCS2 Probable cold shock protein A OS=Mycobacterium smegmatis (strain
ATCC 700084 / mc(2)155) GN=cspA PE=1 SV=1
Length = 67
Score = 65.1 bits (157), Expect = 4e-10, Method: Composition-based stats.
Identities = 29/49 (59%), Positives = 36/49 (73%)
Query: 9 GKVTWFDGAKGYGFIRPDDGGADLFVHQKSIKSDGYRTLYENQSVEFDV 57
G V WF+ KG+GFI P+DG AD+FVH I+ G+RTL ENQ VEF+V
Sbjct: 4 GTVKWFNAEKGFGFIAPEDGSADVFVHYTEIQGSGFRTLEENQKVEFEV 52
>sp|P63848|CSPA_MYCTU Probable cold shock protein A OS=Mycobacterium tuberculosis
GN=cspA PE=3 SV=1
Length = 67
Score = 64.3 bits (155), Expect = 7e-10, Method: Composition-based stats.
Identities = 28/49 (57%), Positives = 36/49 (73%)
Query: 9 GKVTWFDGAKGYGFIRPDDGGADLFVHQKSIKSDGYRTLYENQSVEFDV 57
G V WF+ KG+GFI P+DG AD+FVH I+ G+RTL ENQ VEF++
Sbjct: 4 GTVKWFNAEKGFGFIAPEDGSADVFVHYTEIQGTGFRTLEENQKVEFEI 52
>sp|P63849|CSPA_MYCBO Probable cold shock protein A OS=Mycobacterium bovis (strain ATCC
BAA-935 / AF2122/97) GN=cspA PE=3 SV=1
Length = 67
Score = 64.3 bits (155), Expect = 7e-10, Method: Composition-based stats.
Identities = 28/49 (57%), Positives = 36/49 (73%)
Query: 9 GKVTWFDGAKGYGFIRPDDGGADLFVHQKSIKSDGYRTLYENQSVEFDV 57
G V WF+ KG+GFI P+DG AD+FVH I+ G+RTL ENQ VEF++
Sbjct: 4 GTVKWFNAEKGFGFIAPEDGSADVFVHYTEIQGTGFRTLEENQKVEFEI 52
>sp|Q9VRN5|LIN28_DROME Protein lin-28 homolog OS=Drosophila melanogaster GN=lin-28 PE=2
SV=2
Length = 195
Score = 64.3 bits (155), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 67/170 (39%), Gaps = 44/170 (25%)
Query: 8 TGKVTWFDGAKGYGFIRPDDGGADLFVHQKSIKSDGYRTLYENQSVEFDVQLEADGKYQA 67
GK WF+ AKG+GF+ P+DGG ++FVHQ I+ G+R+L E + VEF+ Q
Sbjct: 40 LGKCKWFNVAKGWGFLTPNDGGQEVFVHQSVIQMSGFRSLGEQEEVEFECQ--------- 90
Query: 68 LDVTAPGGAPVHSSKNNNTNNNSGYNNNRGGRGGGGAGFGGYWKGNNDSRRNNGGGYGPG 127
+ G R GG+ G ++ + R
Sbjct: 91 -------------------RTSRGLEATRVSSRHGGSCQGSTYRPRINRRTRRMR----- 126
Query: 128 GVVCYNC-DGVGHVARECTSNRRNSNYNNNSGGCYNCGDPEHFARDCPRQ 176
CYNC + H+A EC C+ C +H DCP +
Sbjct: 127 ---CYNCGEFANHIASECA-------LGPQPKRCHRCRGEDHLHADCPHK 166
>sp|P36995|CSPB_ECOLI Cold shock-like protein CspB OS=Escherichia coli (strain K12)
GN=cspB PE=2 SV=1
Length = 71
Score = 64.3 bits (155), Expect = 8e-10, Method: Composition-based stats.
Identities = 30/62 (48%), Positives = 40/62 (64%)
Query: 6 RSTGKVTWFDGAKGYGFIRPDDGGADLFVHQKSIKSDGYRTLYENQSVEFDVQLEADGKY 65
+ TG V WF+ KG+GFI P DG D+FVH +I++D YRTL+E Q V F ++ A G
Sbjct: 4 KMTGLVKWFNADKGFGFISPVDGSKDVFVHFSAIQNDNYRTLFEGQKVTFSIESGAKGPA 63
Query: 66 QA 67
A
Sbjct: 64 AA 65
>sp|Q9KN00|CSPA_VIBCH Cold shock-like protein CspA OS=Vibrio cholerae serotype O1
(strain ATCC 39315 / El Tor Inaba N16961) GN=cspA PE=3
SV=1
Length = 70
Score = 64.3 bits (155), Expect = 9e-10, Method: Composition-based stats.
Identities = 35/67 (52%), Positives = 44/67 (65%), Gaps = 1/67 (1%)
Query: 6 RSTGKVTWFDGAKGYGFIRPDDGGADLFVHQKSIKSDGYRTLYENQSVEFDVQLEADGKY 65
+ TG V WF+ KG+GFI D+GG D+FVH KSI S+G++TL E Q V F V+ G
Sbjct: 4 KMTGSVKWFNETKGFGFISQDNGGQDVFVHFKSIVSEGFKTLAEGQRVSFTVEQGKKGP- 62
Query: 66 QALDVTA 72
QA VTA
Sbjct: 63 QAAQVTA 69
>sp|O54310|CSP_THEMA Cold shock-like protein OS=Thermotoga maritima (strain ATCC 43589
/ MSB8 / DSM 3109 / JCM 10099) GN=csp PE=1 SV=1
Length = 66
Score = 63.9 bits (154), Expect = 1e-09, Method: Composition-based stats.
Identities = 29/50 (58%), Positives = 38/50 (76%), Gaps = 1/50 (2%)
Query: 9 GKVTWFDGAKGYGFIRPDDGGADLFVHQKSIKSDGYRTLYENQSVEFDVQ 58
GKV WFD KGYGFI D+GG D+FVH +I+ +G++TL E Q VEF++Q
Sbjct: 3 GKVKWFDSKKGYGFITKDEGG-DVFVHWSAIEMEGFKTLKEGQVVEFEIQ 51
>sp|Q01761|CSP7_STRC2 Cold shock-like protein 7.0 OS=Streptomyces clavuligerus (strain
ATCC 27064 / DSM 738 / JCM 4710 / NBRC 13307 / NCIMB
12785 / NRRL 3585 / VKM Ac-602) GN=SC7.0 PE=1 SV=1
Length = 66
Score = 63.5 bits (153), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 28/52 (53%), Positives = 36/52 (69%)
Query: 6 RSTGKVTWFDGAKGYGFIRPDDGGADLFVHQKSIKSDGYRTLYENQSVEFDV 57
+TG V WF+ KG+GFI D GG D+FVH +I + G+R+L ENQ V FDV
Sbjct: 1 MATGTVKWFNAEKGFGFIAQDGGGPDVFVHYSAINATGFRSLEENQVVNFDV 52
>sp|Q06066|YBOX1_CHICK Nuclease-sensitive element-binding protein 1 OS=Gallus gallus
GN=YBX1 PE=2 SV=1
Length = 321
Score = 63.5 bits (153), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 5/82 (6%)
Query: 5 TRSTGKVTWFDGAKGYGFIRPDDGGADLFVHQKSIKSDG----YRTLYENQSVEFDVQLE 60
T+ G V WF+ GYGFI +D D+FVHQ +IK + R++ + ++VEFDV +E
Sbjct: 54 TKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDV-VE 112
Query: 61 ADGKYQALDVTAPGGAPVHSSK 82
+ +A +VT PGG PV SK
Sbjct: 113 GEKGAEAANVTGPGGVPVQGSK 134
>sp|P0A971|CSPD_SHIFL Cold shock-like protein CspD OS=Shigella flexneri GN=cspD PE=3
SV=1
Length = 74
Score = 63.5 bits (153), Expect = 1e-09, Method: Composition-based stats.
Identities = 31/62 (50%), Positives = 41/62 (66%)
Query: 9 GKVTWFDGAKGYGFIRPDDGGADLFVHQKSIKSDGYRTLYENQSVEFDVQLEADGKYQAL 68
G V WF+ AKG+GFI P+ GG D+F H +I+ DGYRTL QSV+FDV G + ++
Sbjct: 4 GTVKWFNNAKGFGFICPEGGGEDIFAHYSTIQMDGYRTLKAGQSVQFDVHQGPKGNHASV 63
Query: 69 DV 70
V
Sbjct: 64 IV 65
>sp|P0A968|CSPD_ECOLI Cold shock-like protein CspD OS=Escherichia coli (strain K12)
GN=cspD PE=1 SV=1
Length = 74
Score = 63.5 bits (153), Expect = 1e-09, Method: Composition-based stats.
Identities = 31/62 (50%), Positives = 41/62 (66%)
Query: 9 GKVTWFDGAKGYGFIRPDDGGADLFVHQKSIKSDGYRTLYENQSVEFDVQLEADGKYQAL 68
G V WF+ AKG+GFI P+ GG D+F H +I+ DGYRTL QSV+FDV G + ++
Sbjct: 4 GTVKWFNNAKGFGFICPEGGGEDIFAHYSTIQMDGYRTLKAGQSVQFDVHQGPKGNHASV 63
Query: 69 DV 70
V
Sbjct: 64 IV 65
>sp|P0A969|CSPD_ECOL6 Cold shock-like protein CspD OS=Escherichia coli O6:H1 (strain
CFT073 / ATCC 700928 / UPEC) GN=cspD PE=3 SV=1
Length = 74
Score = 63.5 bits (153), Expect = 1e-09, Method: Composition-based stats.
Identities = 31/62 (50%), Positives = 41/62 (66%)
Query: 9 GKVTWFDGAKGYGFIRPDDGGADLFVHQKSIKSDGYRTLYENQSVEFDVQLEADGKYQAL 68
G V WF+ AKG+GFI P+ GG D+F H +I+ DGYRTL QSV+FDV G + ++
Sbjct: 4 GTVKWFNNAKGFGFICPEGGGEDIFAHYSTIQMDGYRTLKAGQSVQFDVHQGPKGNHASV 63
Query: 69 DV 70
V
Sbjct: 64 IV 65
>sp|P0A970|CSPD_ECO57 Cold shock-like protein CspD OS=Escherichia coli O157:H7 GN=cspD
PE=3 SV=1
Length = 74
Score = 63.5 bits (153), Expect = 1e-09, Method: Composition-based stats.
Identities = 31/62 (50%), Positives = 41/62 (66%)
Query: 9 GKVTWFDGAKGYGFIRPDDGGADLFVHQKSIKSDGYRTLYENQSVEFDVQLEADGKYQAL 68
G V WF+ AKG+GFI P+ GG D+F H +I+ DGYRTL QSV+FDV G + ++
Sbjct: 4 GTVKWFNNAKGFGFICPEGGGEDIFAHYSTIQMDGYRTLKAGQSVQFDVHQGPKGNHASV 63
Query: 69 DV 70
V
Sbjct: 64 IV 65
>sp|P67809|YBOX1_HUMAN Nuclease-sensitive element-binding protein 1 OS=Homo sapiens
GN=YBX1 PE=1 SV=3
Length = 324
Score = 63.5 bits (153), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 5/82 (6%)
Query: 5 TRSTGKVTWFDGAKGYGFIRPDDGGADLFVHQKSIKSDG----YRTLYENQSVEFDVQLE 60
T+ G V WF+ GYGFI +D D+FVHQ +IK + R++ + ++VEFDV +E
Sbjct: 57 TKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDV-VE 115
Query: 61 ADGKYQALDVTAPGGAPVHSSK 82
+ +A +VT PGG PV SK
Sbjct: 116 GEKGAEAANVTGPGGVPVQGSK 137
>sp|P67808|YBOX1_BOVIN Nuclease-sensitive element-binding protein 1 OS=Bos taurus GN=YBX1
PE=2 SV=3
Length = 324
Score = 63.5 bits (153), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 5/82 (6%)
Query: 5 TRSTGKVTWFDGAKGYGFIRPDDGGADLFVHQKSIKSDG----YRTLYENQSVEFDVQLE 60
T+ G V WF+ GYGFI +D D+FVHQ +IK + R++ + ++VEFDV +E
Sbjct: 57 TKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDV-VE 115
Query: 61 ADGKYQALDVTAPGGAPVHSSK 82
+ +A +VT PGG PV SK
Sbjct: 116 GEKGAEAANVTGPGGVPVQGSK 137
>sp|P0A986|CSPI_ECOLI Cold shock-like protein CspI OS=Escherichia coli (strain K12)
GN=cspI PE=3 SV=1
Length = 70
Score = 63.5 bits (153), Expect = 2e-09, Method: Composition-based stats.
Identities = 27/53 (50%), Positives = 38/53 (71%)
Query: 6 RSTGKVTWFDGAKGYGFIRPDDGGADLFVHQKSIKSDGYRTLYENQSVEFDVQ 58
+ TG V WF+ KG+GFI P DG D+FVH +I+S+ ++TL ENQ VEF ++
Sbjct: 4 KMTGLVKWFNPEKGFGFITPKDGSKDVFVHFSAIQSNDFKTLTENQEVEFGIE 56
>sp|P0A987|CSPI_ECOL6 Cold shock-like protein CspI OS=Escherichia coli O6:H1 (strain
CFT073 / ATCC 700928 / UPEC) GN=cspI PE=3 SV=1
Length = 70
Score = 63.5 bits (153), Expect = 2e-09, Method: Composition-based stats.
Identities = 27/53 (50%), Positives = 38/53 (71%)
Query: 6 RSTGKVTWFDGAKGYGFIRPDDGGADLFVHQKSIKSDGYRTLYENQSVEFDVQ 58
+ TG V WF+ KG+GFI P DG D+FVH +I+S+ ++TL ENQ VEF ++
Sbjct: 4 KMTGLVKWFNPEKGFGFITPKDGSKDVFVHFSAIQSNDFKTLTENQEVEFGIE 56
>sp|Q28618|YBOX1_RABIT Nuclease-sensitive element-binding protein 1 OS=Oryctolagus
cuniculus GN=YBX1 PE=1 SV=3
Length = 324
Score = 63.2 bits (152), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 5/82 (6%)
Query: 5 TRSTGKVTWFDGAKGYGFIRPDDGGADLFVHQKSIKSDG----YRTLYENQSVEFDVQLE 60
T+ G V WF+ GYGFI +D D+FVHQ +IK + R++ + ++VEFDV +E
Sbjct: 57 TKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDV-VE 115
Query: 61 ADGKYQALDVTAPGGAPVHSSK 82
+ +A +VT PGG PV SK
Sbjct: 116 GEKGAEAANVTGPGGVPVQGSK 137
>sp|P62961|YBOX1_RAT Nuclease-sensitive element-binding protein 1 OS=Rattus norvegicus
GN=Ybx1 PE=1 SV=3
Length = 322
Score = 63.2 bits (152), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 5/82 (6%)
Query: 5 TRSTGKVTWFDGAKGYGFIRPDDGGADLFVHQKSIKSDG----YRTLYENQSVEFDVQLE 60
T+ G V WF+ GYGFI +D D+FVHQ +IK + R++ + ++VEFDV +E
Sbjct: 55 TKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDV-VE 113
Query: 61 ADGKYQALDVTAPGGAPVHSSK 82
+ +A +VT PGG PV SK
Sbjct: 114 GEKGAEAANVTGPGGVPVQGSK 135
>sp|P62960|YBOX1_MOUSE Nuclease-sensitive element-binding protein 1 OS=Mus musculus
GN=Ybx1 PE=1 SV=3
Length = 322
Score = 63.2 bits (152), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 5/82 (6%)
Query: 5 TRSTGKVTWFDGAKGYGFIRPDDGGADLFVHQKSIKSDG----YRTLYENQSVEFDVQLE 60
T+ G V WF+ GYGFI +D D+FVHQ +IK + R++ + ++VEFDV +E
Sbjct: 55 TKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDV-VE 113
Query: 61 ADGKYQALDVTAPGGAPVHSSK 82
+ +A +VT PGG PV SK
Sbjct: 114 GEKGAEAANVTGPGGVPVQGSK 135
>sp|Q9S170|CSPG_SHEVD Cold shock-like protein CspG OS=Shewanella violacea (strain JCM
10179 / CIP 106290 / LMG 19151 / DSS12) GN=cspG PE=2
SV=1
Length = 70
Score = 62.8 bits (151), Expect = 2e-09, Method: Composition-based stats.
Identities = 34/66 (51%), Positives = 45/66 (68%), Gaps = 1/66 (1%)
Query: 7 STGKVTWFDGAKGYGFIRPDDGGADLFVHQKSIKSDGYRTLYENQSVEFDVQLEADGKYQ 66
+TG V WF+ KG+GFI D+GG D+FVH +SI SDG++TL E Q V F+V+ G Q
Sbjct: 5 TTGLVKWFNEEKGFGFITQDNGGDDVFVHFRSITSDGFKTLAEGQKVSFEVEQGQKG-LQ 63
Query: 67 ALDVTA 72
A +V A
Sbjct: 64 AANVVA 69
>sp|P57407|CSPC_BUCAI Cold shock-like protein CspC OS=Buchnera aphidicola subsp.
Acyrthosiphon pisum (strain APS) GN=cspC PE=3 SV=2
Length = 69
Score = 62.8 bits (151), Expect = 2e-09, Method: Composition-based stats.
Identities = 27/55 (49%), Positives = 41/55 (74%)
Query: 4 LTRSTGKVTWFDGAKGYGFIRPDDGGADLFVHQKSIKSDGYRTLYENQSVEFDVQ 58
+ + G+V WF+ +KG+GFI P DG D+FVH SI+ +G++TL E Q+VEF++Q
Sbjct: 1 MAKIKGQVKWFNESKGFGFITPSDGSKDVFVHFSSIQGNGFKTLTEGQNVEFEIQ 55
>sp|Q8WW36|ZCH13_HUMAN Zinc finger CCHC domain-containing protein 13 OS=Homo sapiens
GN=ZCCHC13 PE=2 SV=1
Length = 166
Score = 62.4 bits (150), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 50/106 (47%), Gaps = 22/106 (20%)
Query: 130 VCYNCDGVGHVARECTSNRRNSNYNNNSGGCYNCGDPEHFARDCPRQQGGSNSYNNNSGG 189
+CYNC GH+A++C +R + CY CG H ARDC RQ+
Sbjct: 66 ICYNCGRSGHIAKDCKDPKRERRQH-----CYTCGRLGHLARDCDRQK---------EQK 111
Query: 190 CFKCGGYGHLARDCITRGSGGGGGGRCYNCGKSGHLARDCGAGGAG 235
C+ CG GH+ +DC +CY CG+ GH+A +C G
Sbjct: 112 CYSCGKLGHIQKDC--------AQVKCYRCGEIGHVAINCSKARPG 149
Score = 60.8 bits (146), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 47/96 (48%), Gaps = 17/96 (17%)
Query: 160 CYNCGDPEHFARDCPRQQGGSNSYNNNSGGCFKCGGYGHLARDCITRGSGGGGGGRCYNC 219
CYNCG H A+DC + C+ CG GHLARDC + +CY+C
Sbjct: 67 CYNCGRSGHIAKDC------KDPKRERRQHCYTCGRLGHLARDCDRQKEQ-----KCYSC 115
Query: 220 GKSGHLARDCGAGGAGGGGSCFNCGKPGHFARECTK 255
GK GH+ +DC C+ CG+ GH A C+K
Sbjct: 116 GKLGHIQKDCAQV------KCYRCGEIGHVAINCSK 145
Score = 51.2 bits (121), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 190 CFKCGGYGHLARDCITRGSGGGGGGRCYNCGKSGHLARDCGAGGAGGGGSCFNCGKPGHF 249
C+ CG GH+A+DC + CY CG+ GHLARDC C++CGK GH
Sbjct: 67 CYNCGRSGHIAKDC--KDPKRERRQHCYTCGRLGHLARDCDRQKEQ---KCYSCGKLGHI 121
Query: 250 ARECTKV 256
++C +V
Sbjct: 122 QKDCAQV 128
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 38/66 (57%), Gaps = 6/66 (9%)
Query: 190 CFKCGGYGHLARDCITRGSGGGGGGRCYNCGKSGHLARDCGAGGAGGGGSCFNCGKPGHF 249
C+ CG G A++C+ G+ CYNCG+SGH+A+DC C+ CG+ GH
Sbjct: 47 CYCCGESGRNAKNCVLLGNI------CYNCGRSGHIAKDCKDPKRERRQHCYTCGRLGHL 100
Query: 250 ARECTK 255
AR+C +
Sbjct: 101 ARDCDR 106
>sp|P0A975|CSPE_SHIFL Cold shock-like protein CspE OS=Shigella flexneri GN=cspE PE=3
SV=2
Length = 69
Score = 62.4 bits (150), Expect = 3e-09, Method: Composition-based stats.
Identities = 28/64 (43%), Positives = 44/64 (68%)
Query: 4 LTRSTGKVTWFDGAKGYGFIRPDDGGADLFVHQKSIKSDGYRTLYENQSVEFDVQLEADG 63
+++ G V WF+ +KG+GFI P+DG D+FVH +I+++G++TL E Q VEF++ A G
Sbjct: 1 MSKIKGNVKWFNESKGFGFITPEDGSKDVFVHFSAIQTNGFKTLAEGQRVEFEITNGAKG 60
Query: 64 KYQA 67
A
Sbjct: 61 PSAA 64
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.139 0.460
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 133,312,116
Number of Sequences: 539616
Number of extensions: 7677184
Number of successful extensions: 115673
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1278
Number of HSP's successfully gapped in prelim test: 803
Number of HSP's that attempted gapping in prelim test: 37734
Number of HSP's gapped (non-prelim): 31037
length of query: 258
length of database: 191,569,459
effective HSP length: 115
effective length of query: 143
effective length of database: 129,513,619
effective search space: 18520447517
effective search space used: 18520447517
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 60 (27.7 bits)