Query 047168
Match_columns 258
No_of_seqs 315 out of 2554
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 14:30:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047168.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047168hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ts2_A Protein LIN-28 homolog 100.0 5.7E-37 2E-41 248.9 10.2 99 2-101 5-110 (148)
2 2lli_A Protein AIR2; RNA surve 99.9 5.1E-27 1.7E-31 185.2 9.7 103 128-256 4-124 (124)
3 3ulj_A LIN28B, DNA-binding pro 99.9 1.7E-26 5.9E-31 171.4 5.8 79 3-82 5-90 (90)
4 2lli_A Protein AIR2; RNA surve 99.9 4.1E-24 1.4E-28 168.5 11.1 103 89-231 5-123 (124)
5 3i2z_B RNA chaperone, negative 99.9 2E-24 7E-29 154.0 7.9 68 5-73 4-71 (71)
6 3cam_A Cold-shock domain famil 99.9 2.5E-24 8.5E-29 151.8 7.4 65 7-72 2-66 (67)
7 1h95_A CSD, Y-box binding prot 99.9 4.9E-24 1.7E-28 155.1 7.4 70 4-74 6-79 (79)
8 1c9o_A CSPB, cold-shock protei 99.9 7.5E-24 2.6E-28 149.0 6.9 65 7-73 2-66 (66)
9 3a0j_A Cold shock protein; OB- 99.9 1.1E-23 3.7E-28 151.0 7.6 67 7-75 2-70 (73)
10 2kcm_A Cold shock domain famil 99.9 7.8E-24 2.7E-28 151.8 6.7 67 7-75 1-68 (74)
11 1g6p_A Cold shock protein TMCS 99.9 1E-23 3.5E-28 148.3 6.7 66 7-74 1-66 (66)
12 2lss_A Cold shock-like protein 99.8 1.2E-24 4.2E-29 154.7 0.0 68 4-72 2-69 (70)
13 2k5n_A Putative cold-shock pro 99.9 6.5E-23 2.2E-27 147.1 7.9 68 5-76 1-68 (74)
14 1wfq_A UNR protein; beta-barre 99.9 1.1E-22 3.7E-27 151.0 8.2 69 4-75 16-85 (89)
15 2yty_A Cold shock domain-conta 99.9 6.4E-22 2.2E-26 146.6 6.7 69 4-75 16-84 (88)
16 1x65_A UNR protein; cell-free 99.8 2.2E-21 7.5E-26 143.8 4.7 69 4-76 6-76 (89)
17 3aqq_A Calcium-regulated heat 99.8 1.4E-20 4.6E-25 151.4 7.2 71 4-77 60-133 (147)
18 2ytx_A Cold shock domain-conta 99.8 1.6E-20 5.6E-25 141.5 6.6 71 4-78 16-86 (97)
19 2ytv_A Cold shock domain-conta 99.8 8.4E-20 2.9E-24 132.5 6.8 67 4-74 6-74 (79)
20 3nyb_B Protein AIR2; polya RNA 99.6 4.7E-17 1.6E-21 118.9 3.4 60 188-256 6-65 (83)
21 2bh8_A 1B11; transcription, mo 99.6 2.4E-16 8.2E-21 119.6 6.8 61 4-64 14-77 (101)
22 2li8_A Protein LIN-28 homolog 99.5 8.6E-15 2.9E-19 104.7 4.9 62 166-231 2-64 (74)
23 3nyb_B Protein AIR2; polya RNA 99.5 8.5E-15 2.9E-19 106.9 4.7 61 128-206 5-65 (83)
24 2li8_A Protein LIN-28 homolog 99.4 7E-14 2.4E-18 99.9 5.3 40 158-205 25-64 (74)
25 2a51_A Nucleocapsid protein; s 99.3 7.8E-13 2.7E-17 82.9 4.2 38 215-255 2-39 (39)
26 2ec7_A GAG polyprotein (PR55GA 99.3 2.6E-12 8.9E-17 84.6 4.3 40 215-257 8-47 (49)
27 2bl6_A Nucleocapsid protein P1 99.2 3.9E-12 1.3E-16 78.8 3.5 36 215-255 2-37 (37)
28 2ihx_A Nucleocapsid (NC) prote 99.2 5.2E-12 1.8E-16 86.9 3.8 47 187-233 4-50 (61)
29 2ihx_A Nucleocapsid (NC) prote 99.2 9.3E-12 3.2E-16 85.6 5.0 46 157-206 4-49 (61)
30 1a1t_A Nucleocapsid protein; s 99.2 8.1E-12 2.8E-16 84.1 3.4 39 215-256 14-52 (55)
31 2cqf_A RNA-binding protein LIN 99.2 1.8E-11 6.2E-16 84.7 5.2 45 185-233 5-49 (63)
32 1cl4_A Protein (GAG polyprotei 99.2 5.3E-12 1.8E-16 86.5 2.5 44 189-232 3-49 (60)
33 2cqf_A RNA-binding protein LIN 99.2 2.5E-11 8.6E-16 84.0 5.4 44 155-206 5-48 (63)
34 2a51_A Nucleocapsid protein; s 99.2 1.8E-11 6.1E-16 76.6 4.0 38 189-231 2-39 (39)
35 2bl6_A Nucleocapsid protein P1 99.1 3E-11 1E-15 74.8 3.4 36 189-231 2-37 (37)
36 2ec7_A GAG polyprotein (PR55GA 99.1 7.5E-11 2.6E-15 77.5 4.9 39 188-231 7-45 (49)
37 1a1t_A Nucleocapsid protein; s 99.0 8.6E-11 2.9E-15 79.0 3.3 41 187-232 12-52 (55)
38 1cl4_A Protein (GAG polyprotei 99.0 8.4E-11 2.9E-15 80.5 2.5 17 130-146 3-19 (60)
39 3ts2_A Protein LIN-28 homolog 99.0 1.8E-10 6.2E-15 92.9 3.8 43 187-233 97-139 (148)
40 1dsq_A Nucleic acid binding pr 98.0 2.6E-06 8.8E-11 48.1 2.0 18 215-232 4-21 (26)
41 1dsq_A Nucleic acid binding pr 97.9 4.3E-06 1.5E-10 47.2 2.4 18 239-256 4-21 (26)
42 1a6b_B Momulv, zinc finger pro 97.8 1.3E-05 4.4E-10 49.9 2.9 19 215-233 12-30 (40)
43 1nc8_A Nucleocapsid protein; H 97.8 7.5E-06 2.6E-10 47.4 1.6 18 215-232 8-25 (29)
44 1nc8_A Nucleocapsid protein; H 97.7 1.4E-05 4.7E-10 46.3 2.3 18 188-205 7-24 (29)
45 1a6b_B Momulv, zinc finger pro 97.5 5.3E-05 1.8E-09 47.1 2.6 23 185-207 8-30 (40)
46 1u6p_A GAG polyprotein; MLV, A 97.4 5.6E-05 1.9E-09 50.5 2.3 20 214-233 24-43 (56)
47 1u6p_A GAG polyprotein; MLV, A 97.3 0.00039 1.3E-08 46.4 5.0 21 127-147 22-42 (56)
48 2ysa_A Retinoblastoma-binding 97.2 0.00016 5.3E-09 48.2 2.2 21 186-206 6-26 (55)
49 1a62_A RHO; transcription term 97.0 0.00091 3.1E-08 52.3 5.1 65 7-76 51-122 (130)
50 2ysa_A Retinoblastoma-binding 96.6 0.00098 3.4E-08 44.2 2.6 19 128-146 7-25 (55)
51 2k52_A Uncharacterized protein 93.2 0.19 6.6E-06 35.1 5.7 53 4-60 6-59 (80)
52 2id0_A Exoribonuclease 2; RNAs 93.0 0.069 2.3E-06 52.2 4.2 61 5-74 20-80 (644)
53 2cqo_A Nucleolar protein of 40 93.0 0.22 7.6E-06 37.8 6.3 54 4-60 23-81 (119)
54 3go5_A Multidomain protein wit 91.0 0.63 2.2E-05 40.8 7.7 63 4-68 70-133 (285)
55 2b8k_G B16, DNA-directed RNA p 91.0 0.37 1.3E-05 40.5 5.9 80 5-88 85-181 (215)
56 2khi_A 30S ribosomal protein S 90.8 1.6 5.5E-05 32.5 8.8 55 4-61 31-90 (115)
57 2eqs_A ATP-dependent RNA helic 90.4 1 3.5E-05 33.0 7.3 57 5-64 14-78 (103)
58 3l0o_A Transcription terminati 89.3 0.3 1E-05 45.1 4.1 66 7-77 58-130 (427)
59 2k4k_A GSP13, general stress p 88.2 0.77 2.6E-05 35.3 5.3 53 5-60 9-65 (130)
60 2l55_A SILB,silver efflux prot 88.1 0.6 2.1E-05 33.1 4.3 63 6-74 5-75 (82)
61 1y14_B B16, RPB7, DNA-directed 87.4 0.89 3.1E-05 36.5 5.5 53 5-61 85-151 (171)
62 2khj_A 30S ribosomal protein S 86.5 1.4 4.7E-05 32.5 5.7 54 4-61 32-90 (109)
63 3go5_A Multidomain protein wit 85.6 1.6 5.4E-05 38.2 6.4 56 4-69 7-62 (285)
64 1kl9_A Eukaryotic translation 85.1 1.8 6.3E-05 35.2 6.3 54 4-60 16-75 (182)
65 2vb2_X Copper protein, cation 85.0 2.1 7.1E-05 30.7 5.8 61 6-71 17-85 (88)
66 2a19_A EIF-2- alpha, eukaryoti 84.4 1.5 5.2E-05 35.5 5.4 54 4-60 16-75 (175)
67 2qcp_X Cation efflux system pr 84.3 2.4 8.3E-05 29.7 5.8 61 6-71 9-77 (80)
68 3aev_A Translation initiation 82.1 3 0.0001 36.2 6.7 55 4-61 12-72 (275)
69 3ice_A Transcription terminati 81.0 0.8 2.7E-05 42.2 2.7 52 7-63 54-110 (422)
70 1luz_A Protein K3, protein K2; 81.0 1.1 3.8E-05 31.9 3.0 53 4-61 12-71 (88)
71 1wi5_A RRP5 protein homolog; S 80.0 6.5 0.00022 29.2 7.2 56 4-62 22-83 (119)
72 2c35_B Human RPB7, DNA-directe 79.7 2.2 7.7E-05 34.0 4.8 53 5-61 83-151 (172)
73 2bx2_L Ribonuclease E, RNAse E 78.8 4.7 0.00016 38.2 7.3 69 5-74 47-131 (517)
74 3h0g_G DNA-directed RNA polyme 78.6 1.7 6E-05 34.8 3.8 52 5-60 86-151 (172)
75 2hqh_E Restin; beta/BETA struc 76.6 0.7 2.4E-05 25.4 0.5 17 215-231 5-21 (26)
76 1go3_E DNA-directed RNA polyme 76.1 5.9 0.0002 31.9 6.3 53 5-61 83-150 (187)
77 4ayb_E DNA-directed RNA polyme 76.0 6.2 0.00021 31.6 6.4 54 4-61 82-150 (180)
78 1q8k_A Eukaryotic translation 73.9 6.4 0.00022 34.7 6.4 55 4-61 14-74 (308)
79 3cw2_C Translation initiation 65.5 5.5 0.00019 34.3 4.0 55 4-61 12-72 (266)
80 2vnu_D Exosome complex exonucl 59.5 8.2 0.00028 38.2 4.5 49 5-60 31-82 (760)
81 4hti_A Receptor-type tyrosine- 54.7 7.1 0.00024 28.6 2.4 21 50-71 51-71 (99)
82 1j6q_A Cytochrome C maturation 53.3 31 0.0011 26.6 6.0 63 8-73 43-105 (136)
83 3m7n_A Putative uncharacterize 52.5 44 0.0015 26.6 7.1 54 4-59 58-124 (179)
84 2yuc_A TNF receptor-associated 52.4 30 0.001 23.0 5.3 9 167-176 7-15 (76)
85 2kct_A Cytochrome C-type bioge 52.3 27 0.00094 25.1 5.2 63 7-72 18-83 (94)
86 2id0_A Exoribonuclease 2; RNAs 48.1 31 0.0011 33.3 6.5 53 6-61 563-632 (644)
87 2wp8_J Exosome complex exonucl 46.2 15 0.0005 37.5 4.0 49 5-60 248-299 (977)
88 2je6_I RRP4, exosome complex R 45.5 38 0.0013 28.7 5.9 55 5-62 76-137 (251)
89 2pzo_E CAP-Gly domain-containi 45.2 5.9 0.0002 24.2 0.5 17 215-231 22-38 (42)
90 3psi_A Transcription elongatio 42.3 39 0.0013 35.3 6.4 55 4-61 903-962 (1219)
91 1hh2_P NUSA, N utilization sub 40.6 60 0.0021 28.9 6.7 52 4-61 135-186 (344)
92 3alr_A Nanos protein; zinc-fin 40.5 12 0.00041 27.5 1.7 18 215-232 73-93 (106)
93 3bzc_A TEX; helix-turn-helix, 40.3 32 0.0011 34.2 5.2 54 4-61 655-713 (785)
94 2m0o_A PHD finger protein 1; t 39.9 76 0.0026 21.9 5.5 38 4-42 40-77 (79)
95 2ckz_B C25, DNA-directed RNA p 36.6 71 0.0024 26.3 6.2 53 5-60 83-153 (218)
96 2ba0_A Archeal exosome RNA bin 36.4 1E+02 0.0036 25.5 7.2 56 4-62 58-118 (229)
97 1sr3_A APO-CCME; OB fold, beta 35.9 64 0.0022 24.8 5.3 62 8-73 39-100 (136)
98 2e5p_A Protein PHF1, PHD finge 35.5 98 0.0034 20.8 5.4 38 5-43 24-61 (68)
99 1ah9_A IF1, initiation factor 35.3 77 0.0026 21.1 5.1 53 5-59 6-58 (71)
100 2z0s_A Probable exosome comple 34.7 1.2E+02 0.004 25.2 7.3 56 4-62 67-130 (235)
101 1e3p_A Guanosine pentaphosphat 33.2 9.4 0.00032 37.8 0.1 57 4-64 668-734 (757)
102 3e2u_E CAP-Gly domain-containi 31.3 13 0.00046 22.7 0.5 17 215-231 22-38 (42)
103 3cdi_A Polynucleotide phosphor 30.3 11 0.00037 37.2 0.0 56 5-64 629-690 (723)
104 3i4o_A Translation initiation 30.3 1E+02 0.0035 21.3 5.1 55 5-61 14-68 (79)
105 4he6_A Peptidase family U32; u 29.5 96 0.0033 21.4 5.0 21 6-26 7-27 (89)
106 4aid_A Polyribonucleotide nucl 28.9 12 0.0004 37.0 0.0 57 5-64 639-700 (726)
107 3d2w_A TAR DNA-binding protein 28.8 37 0.0013 23.2 2.7 22 7-28 34-58 (89)
108 2nn6_I 3'-5' exoribonuclease C 28.6 2.4E+02 0.0081 22.9 8.8 70 5-76 83-166 (209)
109 3our_B EIIA, phosphotransferas 27.2 1.1E+02 0.0038 24.7 5.5 47 6-54 77-129 (183)
110 4hcz_A PHD finger protein 1; p 26.6 1.2E+02 0.0043 19.7 4.6 38 4-42 17-54 (58)
111 2ja9_A Exosome complex exonucl 25.7 2.1E+02 0.0071 22.6 7.0 55 4-61 8-66 (175)
112 3ayh_B DNA-directed RNA polyme 25.6 1.5E+02 0.0051 23.9 6.3 52 5-60 83-157 (203)
113 2ctt_A DNAJ homolog subfamily 24.2 1.3E+02 0.0045 21.3 5.1 36 128-170 45-80 (104)
114 2gpr_A Glucose-permease IIA co 24.1 1.4E+02 0.0047 23.3 5.5 31 5-36 49-79 (154)
115 2e5q_A PHD finger protein 19; 23.7 1.1E+02 0.0037 20.3 3.9 37 5-42 22-58 (63)
116 2xnq_A Nuclear polyadenylated 22.8 42 0.0014 23.3 2.1 21 7-27 46-66 (97)
117 2wbr_A GW182, gawky, LD47780P; 22.3 55 0.0019 23.2 2.5 21 8-28 31-53 (89)
118 1ax3_A Iiaglc, glucose permeas 21.7 1.4E+02 0.0047 23.5 5.0 48 6-54 55-107 (162)
119 1f3z_A EIIA-GLC, glucose-speci 21.4 1.7E+02 0.0059 22.9 5.6 31 5-36 54-84 (161)
120 3nyy_A Putative glycyl-glycine 20.6 83 0.0028 26.6 3.8 34 6-39 145-181 (252)
121 2cpd_A Apobec-1 stimulating pr 20.6 47 0.0016 22.8 1.9 19 9-27 42-60 (99)
No 1
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=100.00 E-value=5.7e-37 Score=248.94 Aligned_cols=99 Identities=31% Similarity=0.583 Sum_probs=84.8
Q ss_pred CCccccceEEEEeeCCCceeEEecC-------CCCCceEEeccccccCCccccCCCCcEEEEEEeCCCccceeeccccCC
Q 047168 2 AQLTRSTGKVTWFDGAKGYGFIRPD-------DGGADLFVHQKSIKSDGYRTLYENQSVEFDVQLEADGKYQALDVTAPG 74 (258)
Q Consensus 2 ~~~~~~~G~vk~f~~~kGfGFI~~~-------~~~~dvF~H~s~l~~~~~~~l~~G~~V~F~v~~~~~G~~~A~~V~~~~ 74 (258)
.+.++++|+|||||.+||||||+++ ++++|||||+|+|...+|++|.+|++|+|+++.+++| ++|++|+.++
T Consensus 5 ~~l~~~~G~Vkwfn~~kGfGFI~~~~~~g~p~~~g~DvFvH~s~i~~~g~~~l~eG~~V~f~~~~g~kG-~~A~~V~~pg 83 (148)
T 3ts2_A 5 PQLLHGAGICKWFNVRMGFGFLSMTARAGVALDPPVDVFVHQSKLHMEGFRSLKEGEAVEFTFKKSAKG-LESIRVTGPG 83 (148)
T ss_dssp -CCEEEEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEEEEGGGBCSSSSCCCCTTCEEEEEEEEETTE-EEEEEEESGG
T ss_pred cccccceeEEEEEECCCCeeEEeeCccccccCCCCccEEEEhHHhcccCCccCCCCCEEEEEEEEcccc-chhhcccccC
Confidence 3567899999999999999999987 4679999999999999999999999999999999999 8999999999
Q ss_pred CCcccCCCCCCCCCCCCccCCCCCCCC
Q 047168 75 GAPVHSSKNNNTNNNSGYNNNRGGRGG 101 (258)
Q Consensus 75 g~~~~~s~~~~~g~~~c~~c~~~g~~~ 101 (258)
+++++++++++++...||||++.||++
T Consensus 84 g~pv~GS~rrp~~~~~C~~Cg~~GH~a 110 (148)
T 3ts2_A 84 GVFCIGSERRPKGGDRCYNCGGLDHHA 110 (148)
T ss_dssp GCCCCCCTTSCCCSCCCTTTCCSSCCG
T ss_pred CccccccccccCCCCcccEeCCccchh
Confidence 999999887775544455555444444
No 2
>2lli_A Protein AIR2; RNA surveillance, RNA degradation, RNA binding, exosome, RNA protein; NMR {Saccharomyces cerevisiae}
Probab=99.94 E-value=5.1e-27 Score=185.18 Aligned_cols=103 Identities=30% Similarity=0.732 Sum_probs=85.3
Q ss_pred CCcccccCCCCccccccccccCCCCCCCCCCCcccCCCC-CCCCCCCCCCCCCCCCCCCCCCcccccCCcccCcccCCCC
Q 047168 128 GVVCYNCDGVGHVARECTSNRRNSNYNNNSGGCYNCGDP-EHFARDCPRQQGGSNSYNNNSGGCFKCGGYGHLARDCITR 206 (258)
Q Consensus 128 ~~~C~~Cg~~GH~a~~Cp~~~~~~~~~~~~~~C~~Cg~~-GH~~~~Cp~~~~~~~~~~~~~~~C~~Cg~~GH~~~~C~~~ 206 (258)
...||+|++.||++++||+ ..||+|+++ ||++++||.. ..||+|++.||++++||+.
T Consensus 4 ~~~C~~C~~~GH~~~~Cp~-----------~~C~~Cg~~~gH~~~~C~~~-----------~~C~~Cg~~GH~~~~C~~~ 61 (124)
T 2lli_A 4 APKCNNCSQRGHLKKDCPH-----------IICSYCGATDDHYSRHCPKA-----------IQCSKCDEVGHYRSQCPHK 61 (124)
T ss_dssp SSCCSSCSSSSCCTTTTTS-----------CCCTTTCCTTTCCTTTGGGS-----------SCSSSSSCSSSSTTTSCCC
T ss_pred CCcccCCCCCCcCcccCcC-----------CcCcCCCCcCCccCcccCCc-----------ccccccCCCCCccccCcCc
Confidence 4679999999999999987 579999998 8999999865 4799999999999999875
Q ss_pred CCCCCCCCccccCCCCCccCCCCCCCCCC-----------------CCCccccCCCCCccCCCCCCC
Q 047168 207 GSGGGGGGRCYNCGKSGHLARDCGAGGAG-----------------GGGSCFNCGKPGHFARECTKV 256 (258)
Q Consensus 207 ~~~~~~~~~C~~Cg~~GH~~~~Cp~~~~~-----------------~~~~C~~Cg~~GH~~~~Cp~~ 256 (258)
.. ...||+|++.||++++||+.+.. ..+.||+|++.|||++|||++
T Consensus 62 ~~----~~~C~~Cg~~GH~~~~Cp~~~~~y~~~~~~~~~~~~~~~~~~~~Cy~Cg~~GH~a~dCp~~ 124 (124)
T 2lli_A 62 WK----KVQCTLCKSKKHSKERCPSIWRAYILVDDNEKAKPKVLPFHTIYCYNCGGKGHFGDDCKEK 124 (124)
T ss_dssp CC----CCSSSSSCSSCCCTTTCCCSTTSCCSSSCCCCCCCSCCCCCCCCTTTTSSSCTTTTTSCCC
T ss_pred cc----CccCCCCCcCCcchhhCCCccccccccCccccccccccCCCCCCcCCCCCCCcCcccCcCC
Confidence 32 24799999999999999886531 256899999999999999974
No 3
>3ulj_A LIN28B, DNA-binding protein; beta barrel, cold shock domain fold, nucleic acid binding, D binding protein; 1.06A {Silurana} PDB: 4a4i_A
Probab=99.93 E-value=1.7e-26 Score=171.45 Aligned_cols=79 Identities=38% Similarity=0.809 Sum_probs=73.0
Q ss_pred CccccceEEEEeeCCCceeEEe-------cCCCCCceEEeccccccCCccccCCCCcEEEEEEeCCCccceeeccccCCC
Q 047168 3 QLTRSTGKVTWFDGAKGYGFIR-------PDDGGADLFVHQKSIKSDGYRTLYENQSVEFDVQLEADGKYQALDVTAPGG 75 (258)
Q Consensus 3 ~~~~~~G~vk~f~~~kGfGFI~-------~~~~~~dvF~H~s~l~~~~~~~l~~G~~V~F~v~~~~~G~~~A~~V~~~~g 75 (258)
+.+|.+|+|||||..||||||+ ++++++|||||+|+|...+|++|.+|++|+|+++.+++| ++|++|+.+++
T Consensus 5 ~~~r~tG~VKWFn~~KGfGFI~~~~~~~~p~dgg~DvFVH~s~i~~~g~~~L~eG~~V~f~v~~g~kG-~~A~~Vtg~~G 83 (90)
T 3ulj_A 5 QVLRGSGHCKWFNVRMGFGFISMTSREGSPLENPVDVFVHQSKLYMEGFRSLKEGEPVEFTFKKSSKG-FESLRVTGPGG 83 (90)
T ss_dssp CCEEEEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEEEEGGGBCCSSSCCCCTTCEEEEEEEEETTE-EEEEEEECGGG
T ss_pred cccccceEEEEeeCCCCeEEeEecCcCcCCCCCCccEEEEeehhcccCCCccCCCCEEEEEEEECCCC-cEEEEEECCCC
Confidence 3568899999999999999998 456778999999999999999999999999999999999 89999999999
Q ss_pred CcccCCC
Q 047168 76 APVHSSK 82 (258)
Q Consensus 76 ~~~~~s~ 82 (258)
.++++++
T Consensus 84 ~p~~gse 90 (90)
T 3ulj_A 84 NPCLGNE 90 (90)
T ss_dssp CCCCCCC
T ss_pred ccccCCC
Confidence 9998764
No 4
>2lli_A Protein AIR2; RNA surveillance, RNA degradation, RNA binding, exosome, RNA protein; NMR {Saccharomyces cerevisiae}
Probab=99.91 E-value=4.1e-24 Score=168.48 Aligned_cols=103 Identities=25% Similarity=0.559 Sum_probs=89.6
Q ss_pred CCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCC-CccccccccccCCCCCCCCCCCcccCCCCC
Q 047168 89 NSGYNNNRGGRGGGGAGFGGYWKGNNDSRRNNGGGYGPGGVVCYNCDGV-GHVARECTSNRRNSNYNNNSGGCYNCGDPE 167 (258)
Q Consensus 89 ~~c~~c~~~g~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~C~~Cg~~-GH~a~~Cp~~~~~~~~~~~~~~C~~Cg~~G 167 (258)
..||||++.||++ ++||+ ..||+|++. ||++++||. ...|++|+++|
T Consensus 5 ~~C~~C~~~GH~~---------~~Cp~-------------~~C~~Cg~~~gH~~~~C~~----------~~~C~~Cg~~G 52 (124)
T 2lli_A 5 PKCNNCSQRGHLK---------KDCPH-------------IICSYCGATDDHYSRHCPK----------AIQCSKCDEVG 52 (124)
T ss_dssp SCCSSCSSSSCCT---------TTTTS-------------CCCTTTCCTTTCCTTTGGG----------SSCSSSSSCSS
T ss_pred CcccCCCCCCcCc---------ccCcC-------------CcCcCCCCcCCccCcccCC----------cccccccCCCC
Confidence 4699999999998 99994 489999998 999999997 37899999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCcccccCCcccCcccCCCCCCC---------------CCCCCccccCCCCCccCCCCCC
Q 047168 168 HFARDCPRQQGGSNSYNNNSGGCFKCGGYGHLARDCITRGSG---------------GGGGGRCYNCGKSGHLARDCGA 231 (258)
Q Consensus 168 H~~~~Cp~~~~~~~~~~~~~~~C~~Cg~~GH~~~~C~~~~~~---------------~~~~~~C~~Cg~~GH~~~~Cp~ 231 (258)
|++++||++. ....||+|++.||++++||+.... ....+.||+|++.||+++|||+
T Consensus 53 H~~~~C~~~~--------~~~~C~~Cg~~GH~~~~Cp~~~~~y~~~~~~~~~~~~~~~~~~~~Cy~Cg~~GH~a~dCp~ 123 (124)
T 2lli_A 53 HYRSQCPHKW--------KKVQCTLCKSKKHSKERCPSIWRAYILVDDNEKAKPKVLPFHTIYCYNCGGKGHFGDDCKE 123 (124)
T ss_dssp SSTTTSCCCC--------CCCSSSSSCSSCCCTTTCCCSTTSCCSSSCCCCCCCSCCCCCCCCTTTTSSSCTTTTTSCC
T ss_pred CccccCcCcc--------cCccCCCCCcCCcchhhCCCccccccccCccccccccccCCCCCCcCCCCCCCcCcccCcC
Confidence 9999999873 347899999999999999986421 1135689999999999999996
No 5
>3i2z_B RNA chaperone, negative regulator of CSPA transcription; beta barrel, DNA binding protein/transcription, cytoplasm, gene regulation; 1.10A {Salmonella typhimurium} SCOP: b.40.4.5 PDB: 2l15_A 1mjc_A 3mef_A
Probab=99.91 E-value=2e-24 Score=153.99 Aligned_cols=68 Identities=46% Similarity=0.877 Sum_probs=64.2
Q ss_pred cccceEEEEeeCCCceeEEecCCCCCceEEeccccccCCccccCCCCcEEEEEEeCCCccceeeccccC
Q 047168 5 TRSTGKVTWFDGAKGYGFIRPDDGGADLFVHQKSIKSDGYRTLYENQSVEFDVQLEADGKYQALDVTAP 73 (258)
Q Consensus 5 ~~~~G~vk~f~~~kGfGFI~~~~~~~dvF~H~s~l~~~~~~~l~~G~~V~F~v~~~~~G~~~A~~V~~~ 73 (258)
++++|+|||||.+||||||+++++++|||||+|+|...++++|.+|++|+|+++.+++| ++|++|+++
T Consensus 4 ~~~~G~Vk~fn~~kGfGFI~~~~g~~dvFvH~s~i~~~g~~~l~~G~~V~f~~~~~~kG-~~A~~V~~~ 71 (71)
T 3i2z_B 4 SKIKGNVKWFNESKGFGFITPEDGSKDVFVHFSAIQTNGFKTLAEGQRVEFEITNGAKG-PSAANVTAL 71 (71)
T ss_dssp -CEEEEEEEEETTTTEEEEEETTCCCCEEEEGGGBCCSSCCCCCTTCEEEEEEEEETTE-EEEEEEEEC
T ss_pred ccccEEEEEEECCCCcEEEecCCCCccEEEEhHHcccccCcCCCCCCEEEEEEEECCCC-CEeEEEEeC
Confidence 47899999999999999999999999999999999999999999999999999999999 899999863
No 6
>3cam_A Cold-shock domain family protein; cold shock protein, chain SWAP, STRU genomics, oxford protein production facility, OPPF, gene RE; 2.60A {Neisseria meningitidis MC58}
Probab=99.90 E-value=2.5e-24 Score=151.82 Aligned_cols=65 Identities=51% Similarity=0.939 Sum_probs=62.1
Q ss_pred cceEEEEeeCCCceeEEecCCCCCceEEeccccccCCccccCCCCcEEEEEEeCCCccceeecccc
Q 047168 7 STGKVTWFDGAKGYGFIRPDDGGADLFVHQKSIKSDGYRTLYENQSVEFDVQLEADGKYQALDVTA 72 (258)
Q Consensus 7 ~~G~vk~f~~~kGfGFI~~~~~~~dvF~H~s~l~~~~~~~l~~G~~V~F~v~~~~~G~~~A~~V~~ 72 (258)
.+|+|||||.+||||||+++++++|||||+|+|...++++|.+|++|+|+++.+++| ++|++|++
T Consensus 2 ~~G~Vk~fn~~kGfGFI~~~~gg~dvFvH~s~i~~~g~~~l~~G~~V~f~~~~~~kG-~~A~~V~~ 66 (67)
T 3cam_A 2 ATGIVKWFNDAKGFGFITPDEGGEDLFAHFSAINMEGFKTLKEGQRVSFDVTTGPKG-KQAANIQA 66 (67)
T ss_dssp EEEEEEEEETTTTEEEEEETTSCCCEEEEGGGBCGGGGSSCCTTCEEEEEEEEETTE-EEEEEEEE
T ss_pred CCEEEEEEECCCCeEEEecCCCCccEEEEHHHccccCCCCCCCCCEEEEEEEECCCC-ccceEEEe
Confidence 579999999999999999999889999999999999999999999999999999999 69999985
No 7
>1h95_A CSD, Y-box binding protein; translation factor, transcription factor, OB-fold, 5- stranded anti-parallel beta-barrel, single stranded DNA binding; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=99.90 E-value=4.9e-24 Score=155.08 Aligned_cols=70 Identities=43% Similarity=0.755 Sum_probs=64.9
Q ss_pred ccccceEEEEeeCCCceeEEecCCCCCceEEeccccccC----CccccCCCCcEEEEEEeCCCccceeeccccCC
Q 047168 4 LTRSTGKVTWFDGAKGYGFIRPDDGGADLFVHQKSIKSD----GYRTLYENQSVEFDVQLEADGKYQALDVTAPG 74 (258)
Q Consensus 4 ~~~~~G~vk~f~~~kGfGFI~~~~~~~dvF~H~s~l~~~----~~~~l~~G~~V~F~v~~~~~G~~~A~~V~~~~ 74 (258)
+++++|+|||||.+||||||+++++++|||||+|+|... ++++|.+|++|+|+++.+++| ++|++|+.++
T Consensus 6 ~~~~~G~Vkwfn~~kGfGFI~~~~gg~DvFvH~s~i~~~~~~~g~~~l~~G~~V~f~~~~~~kG-~~A~~V~~p~ 79 (79)
T 1h95_A 6 ATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKG-AEAANVTGPG 79 (79)
T ss_dssp EEEEEEEEEEEETTTTEEEEEEGGGTEEEEEEGGGBCSCCCSCCSCSCCSSCEEEEEEEECSSS-EEEESBCCCC
T ss_pred ccccceEEEEEECCCCcEEEecCCCCccEEEEhHHccccccccccccCCCCCEEEEEEEECCCC-ceeEEEECcC
Confidence 356789999999999999999999889999999999876 789999999999999999999 7999999874
No 8
>1c9o_A CSPB, cold-shock protein; beta barrel, homodimer, transcription; 1.17A {Bacillus caldolyticus} SCOP: b.40.4.5 PDB: 2hax_A 1hz9_A 1hzb_A 1i5f_A 1hza_A 1hzc_A 3pf4_A 1csq_A 1nmf_A 1nmg_A 1csp_A 2f52_A 2es2_A 3pf5_A 2i5m_X 2i5l_X
Probab=99.89 E-value=7.5e-24 Score=149.01 Aligned_cols=65 Identities=43% Similarity=0.814 Sum_probs=61.8
Q ss_pred cceEEEEeeCCCceeEEecCCCCCceEEeccccccCCccccCCCCcEEEEEEeCCCccceeeccccC
Q 047168 7 STGKVTWFDGAKGYGFIRPDDGGADLFVHQKSIKSDGYRTLYENQSVEFDVQLEADGKYQALDVTAP 73 (258)
Q Consensus 7 ~~G~vk~f~~~kGfGFI~~~~~~~dvF~H~s~l~~~~~~~l~~G~~V~F~v~~~~~G~~~A~~V~~~ 73 (258)
++|+|||||.+||||||+++++ +|||||+|+|...++++|.+|++|+|+++.+++| ++|++|+++
T Consensus 2 ~~G~Vk~fn~~kGfGFI~~~~g-~dvFvH~s~i~~~g~~~l~~G~~V~f~~~~~~kG-~~A~~V~~~ 66 (66)
T 1c9o_A 2 QRGKVKWFNNEKGYGFIEVEGG-SDVFVHFTAIQGEGFKTLEEGQEVSFEIVQGNRG-PQAANVVKL 66 (66)
T ss_dssp EEEEEEEEETTTTEEEEEETTE-EEEEEEGGGBCSSSCCCCCTTCEEEEEEEEETTE-EEEEEEEEC
T ss_pred CceEEEEEECCCCeEEEecCCC-ccEEEEHHHccccCCCCCCCCCEEEEEEEECCCC-cEeEEEEeC
Confidence 5799999999999999999998 9999999999999999999999999999999999 899999853
No 9
>3a0j_A Cold shock protein; OB-fold, cytoplasm, transcription, structural genomics, NPPSFA; 1.65A {Thermus thermophilus}
Probab=99.89 E-value=1.1e-23 Score=151.01 Aligned_cols=67 Identities=43% Similarity=0.795 Sum_probs=63.2
Q ss_pred cceEEEEeeCCCceeEEecCCCCCceEEeccccccCCccccCCCCcEEEEEEeCC--CccceeeccccCCC
Q 047168 7 STGKVTWFDGAKGYGFIRPDDGGADLFVHQKSIKSDGYRTLYENQSVEFDVQLEA--DGKYQALDVTAPGG 75 (258)
Q Consensus 7 ~~G~vk~f~~~kGfGFI~~~~~~~dvF~H~s~l~~~~~~~l~~G~~V~F~v~~~~--~G~~~A~~V~~~~g 75 (258)
.+|+|||||.+||||||+++++ +|||||+|+|...++++|.+|++|+|++..++ +| ++|++|++++.
T Consensus 2 ~~G~Vk~fn~~kGfGFI~~~~g-~dvFvH~s~i~~~g~~~l~~G~~V~f~~~~~~~~kG-~~A~~V~~~~~ 70 (73)
T 3a0j_A 2 QKGRVKWFNAEKGYGFIEREGD-TDVFVHYTAINAKGFRTLNEGDIVTFDVEPGRNGKG-PQAVNVTVVEP 70 (73)
T ss_dssp EEEEEEEEETTTTEEEEECTTS-CCEEEEGGGBCSSSCSSCCTTCEEEEEEECCSCCSS-SEEEEEEEEEC
T ss_pred CCEEEEEEECCCCEEEEecCCC-CcEEEEhhhccccCCCCCCCCCEEEEEEEECCCCCC-CEEEEEEeCCC
Confidence 5799999999999999999998 99999999999999999999999999999999 88 89999998754
No 10
>2kcm_A Cold shock domain family protein; nucleic acid binding protein, beta barrel, structural genomi 2, protein structure initiative; NMR {Shewanella oneidensis}
Probab=99.89 E-value=7.8e-24 Score=151.82 Aligned_cols=67 Identities=31% Similarity=0.471 Sum_probs=63.5
Q ss_pred cceEEEEeeCCCceeEEecCCCCCceEEeccccc-cCCccccCCCCcEEEEEEeCCCccceeeccccCCC
Q 047168 7 STGKVTWFDGAKGYGFIRPDDGGADLFVHQKSIK-SDGYRTLYENQSVEFDVQLEADGKYQALDVTAPGG 75 (258)
Q Consensus 7 ~~G~vk~f~~~kGfGFI~~~~~~~dvF~H~s~l~-~~~~~~l~~G~~V~F~v~~~~~G~~~A~~V~~~~g 75 (258)
|+|+|||||.+||||||+++++ +|||||+|+|. ..+|++|.+|++|+|+++.+++| ++|++|++++.
T Consensus 1 ~~G~Vkwfn~~KGfGFI~~~dG-~DvFvH~s~i~~~~g~~~l~~G~~V~F~~~~g~kG-~~A~~V~~~~~ 68 (74)
T 2kcm_A 1 MKGKVVSYLAAKKYGFIQGDDG-ESYFLHFSELLDKKDEGKLVKGSMVHFDPTPTPKG-LAAKAISLPLE 68 (74)
T ss_dssp CEEEEEEEETTTTEEEEEETTS-CEECCCGGGSSCSGGGTTCCTTSEEEEEEECTTTS-CEEEEEECCSC
T ss_pred CCEEEEEEECCCCEEEEecCCC-ceEEEEhhhcccCCCCCCCCCCCEEEEEEEECCCC-ceeEEEEEcCc
Confidence 5799999999999999999998 99999999999 89999999999999999999999 79999998764
No 11
>1g6p_A Cold shock protein TMCSP; greek-KEY, beta barrel, OB-fold, structural genomics; NMR {Thermotoga maritima} SCOP: b.40.4.5
Probab=99.89 E-value=1e-23 Score=148.30 Aligned_cols=66 Identities=48% Similarity=0.842 Sum_probs=62.2
Q ss_pred cceEEEEeeCCCceeEEecCCCCCceEEeccccccCCccccCCCCcEEEEEEeCCCccceeeccccCC
Q 047168 7 STGKVTWFDGAKGYGFIRPDDGGADLFVHQKSIKSDGYRTLYENQSVEFDVQLEADGKYQALDVTAPG 74 (258)
Q Consensus 7 ~~G~vk~f~~~kGfGFI~~~~~~~dvF~H~s~l~~~~~~~l~~G~~V~F~v~~~~~G~~~A~~V~~~~ 74 (258)
|+|+|||||.+||||||+++++ +|||||+|+|...++++|.+|++|+|+++.+++| ++|++|++++
T Consensus 1 m~G~Vk~fn~~kGfGFI~~~~g-~dvFvH~s~i~~~g~~~l~~G~~V~f~~~~~~~G-~~A~~V~~~~ 66 (66)
T 1g6p_A 1 MRGKVKWFDSKKGYGFITKDEG-GDVFVHWSAIEMEGFKTLKEGQVVEFEIQEGKKG-PQAAHVKVVE 66 (66)
T ss_dssp CCEEEEEEETTTTEEEEEETTS-CBCBBCSSSSCCSSCCCCCSSSEEEEEEECSSSC-CEEEEEEEEC
T ss_pred CcEEEEEEECCCCEEEEecCCC-ceEEEEhHHccccCCCCCCCCCEEEEEEEECCCC-CEEEEEEECC
Confidence 6899999999999999999986 9999999999999999999999999999999999 8999998653
No 12
>2lss_A Cold shock-like protein; CSD, CSP, oligonucleotide binding F fold, RNA binding protein, DNA binding protein; NMR {Rickettsia rickettsii}
Probab=99.81 E-value=1.2e-24 Score=154.71 Aligned_cols=68 Identities=35% Similarity=0.713 Sum_probs=64.5
Q ss_pred ccccceEEEEeeCCCceeEEecCCCCCceEEeccccccCCccccCCCCcEEEEEEeCCCccceeecccc
Q 047168 4 LTRSTGKVTWFDGAKGYGFIRPDDGGADLFVHQKSIKSDGYRTLYENQSVEFDVQLEADGKYQALDVTA 72 (258)
Q Consensus 4 ~~~~~G~vk~f~~~kGfGFI~~~~~~~dvF~H~s~l~~~~~~~l~~G~~V~F~v~~~~~G~~~A~~V~~ 72 (258)
+++++|+|||||.+||||||+++++++|||||+|+|...++++|.+|++|+|+++.+++| ++|++|++
T Consensus 2 ~~~~~G~Vk~fn~~kGfGFI~~~~gg~dvFvH~s~i~~~g~~~l~~G~~V~f~~~~~~~g-~~A~~V~~ 69 (70)
T 2lss_A 2 ATNIVGKVKWYNSTKNFGFIEQDNGGKDVFVHKSAVDAAGLHSLEEGQDVIFDLEEKQGK-AYAVNLRI 69 (70)
Confidence 567999999999999999999999889999999999999999999999999999999998 89999975
No 13
>2k5n_A Putative cold-shock protein; GFT protein structure, PSI, nesgc, OB fold, cold shock structural genomics; NMR {Pectobacterium atrosepticum}
Probab=99.88 E-value=6.5e-23 Score=147.10 Aligned_cols=68 Identities=21% Similarity=0.393 Sum_probs=62.6
Q ss_pred cccceEEEEeeCCCceeEEecCCCCCceEEeccccccCCccccCCCCcEEEEEEeCCCccceeeccccCCCC
Q 047168 5 TRSTGKVTWFDGAKGYGFIRPDDGGADLFVHQKSIKSDGYRTLYENQSVEFDVQLEADGKYQALDVTAPGGA 76 (258)
Q Consensus 5 ~~~~G~vk~f~~~kGfGFI~~~~~~~dvF~H~s~l~~~~~~~l~~G~~V~F~v~~~~~G~~~A~~V~~~~g~ 76 (258)
|+++|+|||||.+||||||+++++.+| |||+|+|...+ +|.+|++|+|+++.+++| ++|++|++++..
T Consensus 1 M~~~G~Vkwfn~~KGfGFI~~~dg~~d-FvH~s~i~~~g--~l~~G~~V~F~~~~g~kG-~~A~~V~~~~~~ 68 (74)
T 2k5n_A 1 MAMNGTITTWFKDKGFGFIKDENGDNR-YFHVIKVANPD--LIKKDAAVTFEPTTNNKG-LSAYAVKVVPLE 68 (74)
T ss_dssp CCEEEEEEEEETTTTEEEEEESSSCEE-EEEGGGBSSGG--GCCTTCEEEEEEEECSSS-EEEEEEEECCSS
T ss_pred CCcceEEEEEECCCCeEEEecCCCCce-EEEHhHcccCC--CCCCCCEEEEEEEeCCCC-ceeEEEEeCCCc
Confidence 467899999999999999999998777 99999999887 799999999999999999 899999987653
No 14
>1wfq_A UNR protein; beta-barrel, translational regulation, RNA chaperone, RNA/DN binding, QB fold, greek-KEY topology, structur genomics; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=99.87 E-value=1.1e-22 Score=150.98 Aligned_cols=69 Identities=29% Similarity=0.442 Sum_probs=63.7
Q ss_pred ccccceEEEEeeCCCceeEEecCCCCCceEEeccccccCCccccCCCCcEEEEEEeCCC-ccceeeccccCCC
Q 047168 4 LTRSTGKVTWFDGAKGYGFIRPDDGGADLFVHQKSIKSDGYRTLYENQSVEFDVQLEAD-GKYQALDVTAPGG 75 (258)
Q Consensus 4 ~~~~~G~vk~f~~~kGfGFI~~~~~~~dvF~H~s~l~~~~~~~l~~G~~V~F~v~~~~~-G~~~A~~V~~~~g 75 (258)
.++++|+||||| ||||||+++++++|||||+++|... ++.|.+|++|+|+++.+++ |+++|++|++++.
T Consensus 16 ~~~~~G~Vkwf~--KGfGFI~~ddgg~DVFvH~s~i~~~-~~~L~~G~~V~F~v~~~~k~Gk~~A~~V~~~~~ 85 (89)
T 1wfq_A 16 ALRETGVIEKLL--TSYGFIQCSERQARLFFHCSQYNGN-LQDLKVGDDVEFEVSSDRRTGKPIAVKLVKISG 85 (89)
T ss_dssp CCEEEEEEEEEC--SSEEEEEETTTTEEEEEETTTCSSC-TTTCCTTCCEEEEEEECSSSCCEEEEEEEESSC
T ss_pred ccccceEEEEEe--CCeeEEecCCCCccEEEEhHHhhCc-cCCCCCCCEEEEEEEECCCCCCcEEEEEEECCc
Confidence 478899999996 9999999999989999999999887 7899999999999999998 8789999998754
No 15
>2yty_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold; NMR {Homo sapiens}
Probab=99.85 E-value=6.4e-22 Score=146.58 Aligned_cols=69 Identities=23% Similarity=0.377 Sum_probs=63.9
Q ss_pred ccccceEEEEeeCCCceeEEecCCCCCceEEeccccccCCccccCCCCcEEEEEEeCCCccceeeccccCCC
Q 047168 4 LTRSTGKVTWFDGAKGYGFIRPDDGGADLFVHQKSIKSDGYRTLYENQSVEFDVQLEADGKYQALDVTAPGG 75 (258)
Q Consensus 4 ~~~~~G~vk~f~~~kGfGFI~~~~~~~dvF~H~s~l~~~~~~~l~~G~~V~F~v~~~~~G~~~A~~V~~~~g 75 (258)
.++++|+||||+ ||||||+++++++|||||+|+|... ++.|.+|++|+|+++.+++|+++|++|++++.
T Consensus 16 ~~~~~G~Vk~f~--kGfGFI~~ddgg~DvFvH~S~i~~~-~~~L~~G~~V~F~~~~g~~Gk~~A~~V~~~~~ 84 (88)
T 2yty_A 16 SKRLLGYVATLK--DNFGFIETANHDKEIFFHYSEFSGD-VDSLELGDMVEYSLSKGKGNKVSAEKVNKTSG 84 (88)
T ss_dssp CCCEEEEEEEEC--SSEEEEECSSSSCEEEEETTTCCSC-TTTCCTTCEEEECCCCCSCSCCBCCSCEECCC
T ss_pred CCceeEEEEEEE--CCccEEecCCCCceEEEEEhhhccc-cCcCCCCCEEEEEEEECCCCCeEeEEEEECCC
Confidence 578899999997 8999999999889999999999987 78999999999999999999789999998754
No 16
>1x65_A UNR protein; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold, greek-KEY topology protein; NMR {Homo sapiens}
Probab=99.83 E-value=2.2e-21 Score=143.79 Aligned_cols=69 Identities=25% Similarity=0.371 Sum_probs=62.0
Q ss_pred ccccceEEEEeeCCCceeEEecCCCCCceEEeccccccCCccccCCCCcEEEEEEeCCC--ccceeeccccCCCC
Q 047168 4 LTRSTGKVTWFDGAKGYGFIRPDDGGADLFVHQKSIKSDGYRTLYENQSVEFDVQLEAD--GKYQALDVTAPGGA 76 (258)
Q Consensus 4 ~~~~~G~vk~f~~~kGfGFI~~~~~~~dvF~H~s~l~~~~~~~l~~G~~V~F~v~~~~~--G~~~A~~V~~~~g~ 76 (258)
.++++|+||||+ ||||||+++++++|||||+|+|.. + +.|.+|++|+|+++.+++ |+++|++|++++..
T Consensus 6 ~~r~~G~Vk~f~--KGfGFI~~~~gg~DvFvH~s~i~~-~-~~L~~G~~V~F~v~~g~kg~G~~~A~~V~~~~~~ 76 (89)
T 1x65_A 6 SGREMGVIAAMR--DGFGFIKCVDRDVRMFFHFSEILD-G-NQLHIADEVEFTVVPDMLSAQRNHAIRIKKLPKG 76 (89)
T ss_dssp CCCEEEEEEECC--TTBCEEEESSSSSCCCCBTTGGGG-S-CCCCTTCCEEECCBCCSSSCCCCBCCSCEECCBT
T ss_pred CcceeEEEEEEe--CCcceeecCCCCccEEEEhhhccC-C-CCCCCCCEEEEEEEeCCCcCCCceeeEEEECCCC
Confidence 368899999995 999999999988999999999987 5 789999999999999986 56899999987653
No 17
>3aqq_A Calcium-regulated heat stable protein 1; compact beta-barrel, cold shock domain, ssDNA binding, DNA B protein; 2.80A {Homo sapiens}
Probab=99.82 E-value=1.4e-20 Score=151.42 Aligned_cols=71 Identities=30% Similarity=0.469 Sum_probs=62.9
Q ss_pred ccccceEEEEeeCCCceeEEecCCCCCceEEeccccccCCccccCCCCcEEEEEEeC---CCccceeeccccCCCCc
Q 047168 4 LTRSTGKVTWFDGAKGYGFIRPDDGGADLFVHQKSIKSDGYRTLYENQSVEFDVQLE---ADGKYQALDVTAPGGAP 77 (258)
Q Consensus 4 ~~~~~G~vk~f~~~kGfGFI~~~~~~~dvF~H~s~l~~~~~~~l~~G~~V~F~v~~~---~~G~~~A~~V~~~~g~~ 77 (258)
.++++|+|||||.+||||||+++++++|||||+++|... ..|.+|++|+|+++.+ .+| ++|++|++++..+
T Consensus 60 g~m~~GtVKwFn~~KGfGFI~~ddGg~DVFVH~Sai~~~--~~L~eGq~V~Fev~~~~~~~~g-~qA~nV~~~~~~p 133 (147)
T 3aqq_A 60 GPVYKGVCKCFCRSKGHGFITPADGGPDIFLHISDVEGE--YVPVEGDEVTYKMCSIPPKNEK-LQAVEVVITHLAP 133 (147)
T ss_dssp SCCEEEEEEEEETTTTEEEEEESSSCSCEEEEGGGEESS--BCCCTTCEEEEEEEEC--CCSC-EEEEEEEEEECCS
T ss_pred CCccceEEEEEeCCCCeEEeccCCCCccEEEEeeeecCC--CcCCCCCEEEEEEEeccCCCCC-ceEEEEEeCCCCC
Confidence 367899999999999999999999999999999999855 4899999999999874 344 8999999987665
No 18
>2ytx_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold; NMR {Homo sapiens}
Probab=99.81 E-value=1.6e-20 Score=141.49 Aligned_cols=71 Identities=28% Similarity=0.378 Sum_probs=63.5
Q ss_pred ccccceEEEEeeCCCceeEEecCCCCCceEEeccccccCCccccCCCCcEEEEEEeCCCccceeeccccCCCCcc
Q 047168 4 LTRSTGKVTWFDGAKGYGFIRPDDGGADLFVHQKSIKSDGYRTLYENQSVEFDVQLEADGKYQALDVTAPGGAPV 78 (258)
Q Consensus 4 ~~~~~G~vk~f~~~kGfGFI~~~~~~~dvF~H~s~l~~~~~~~l~~G~~V~F~v~~~~~G~~~A~~V~~~~g~~~ 78 (258)
.++.+|+|||| .||||||+++++++|||||+++|... ++.|.+|++|+|+++.++++ ++|++|++++...+
T Consensus 16 ~~~~~G~Vkwf--~KGfGFI~~ddg~~DvFvH~s~i~~~-~~~L~~G~~V~F~v~~~~~g-~~A~~V~~~~~~~~ 86 (97)
T 2ytx_A 16 QARCQGVVCAM--KEAFGFIERGDVVKEIFFHYSEFKGD-LETLQPGDDVEFTIKDRNGK-EVATDVRLLPQGTV 86 (97)
T ss_dssp CCCEEEEECCC--CSSEEEEECSSSCCCEEEETTTCCSC-TTSCCSCCEEEEEECCCSSS-CBEEEEEECCCSSC
T ss_pred CcceeEEEEEE--eCCceEEecCCCCceEEEEehHhccc-cCCCCCCCEEEEEEEcCCCC-cEEEEEEECCCCcc
Confidence 46789999999 89999999999989999999999987 88999999999999877666 89999998876543
No 19
>2ytv_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold; NMR {Homo sapiens}
Probab=99.79 E-value=8.4e-20 Score=132.53 Aligned_cols=67 Identities=31% Similarity=0.450 Sum_probs=60.7
Q ss_pred ccccceEEEEeeCCCceeEEecCCC-CCceEEeccccccCCccccCCCCcEEEEEEeCCC-ccceeeccccCC
Q 047168 4 LTRSTGKVTWFDGAKGYGFIRPDDG-GADLFVHQKSIKSDGYRTLYENQSVEFDVQLEAD-GKYQALDVTAPG 74 (258)
Q Consensus 4 ~~~~~G~vk~f~~~kGfGFI~~~~~-~~dvF~H~s~l~~~~~~~l~~G~~V~F~v~~~~~-G~~~A~~V~~~~ 74 (258)
.++.+|+|+|| +||||||+++++ ++|||||+++|. .+ +.|.+|++|+|+++.+++ |+++|++|++++
T Consensus 6 ~~~~~G~V~~~--~KGfGFI~~ddg~g~DvFvH~s~i~-~g-~~l~~G~~V~F~v~~~~k~G~~~A~~V~~~~ 74 (79)
T 2ytv_A 6 SGLRRATVECV--KDQFGFINYEVGDSKKLFFHVKEVQ-DG-IELQAGDEVEFSVILNQRTGKCSACNVWRVS 74 (79)
T ss_dssp CSBCCEEEEEC--CSSEEEESCCCSSSSSEEEETTTCC-SS-CCCCTTCEEECBCEECSSSCCEECCSCEECS
T ss_pred CCcccEEEEEe--cccceeEeCCCCCCCcEEEEhHHcC-CC-CcCCCCCEEEEEEEECCCCCCceeEEEEECC
Confidence 57899999999 699999999988 699999999999 66 789999999999999988 844999999875
No 20
>3nyb_B Protein AIR2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=99.65 E-value=4.7e-17 Score=118.90 Aligned_cols=60 Identities=25% Similarity=0.421 Sum_probs=28.4
Q ss_pred CcccccCCcccCcccCCCCCCCCCCCCccccCCCCCccCCCCCCCCCCCCCccccCCCCCccCCCCCCC
Q 047168 188 GGCFKCGGYGHLARDCITRGSGGGGGGRCYNCGKSGHLARDCGAGGAGGGGSCFNCGKPGHFARECTKV 256 (258)
Q Consensus 188 ~~C~~Cg~~GH~~~~C~~~~~~~~~~~~C~~Cg~~GH~~~~Cp~~~~~~~~~C~~Cg~~GH~~~~Cp~~ 256 (258)
..||+|++.||++++||+.. +||+|++.+|++++|+.+.. .+.||+|++.|||++|||++
T Consensus 6 ~~C~~Cg~~GH~~~~Cp~~~-------rcY~c~~~gh~~~~c~~p~~--~~~CYnCG~~GH~~rdC~~~ 65 (83)
T 3nyb_B 6 VQCTLCKSKKHSKERCPSIW-------RAYILVDDNEKAKPKVLPFH--TIYCYNCGGKGHFGDDCKEK 65 (83)
T ss_dssp -CCSSSCCSSSCGGGCGGGT-------CCCCBC-------------C--CCBCSSSSCBSSCGGGCSSC
T ss_pred CCCCCCCCCCCccccCCCcc-------cccccccCCcccccccCCCC--CCeecccCCCCcCcccCCcc
Confidence 45666666666666666542 46666666666666655421 45666666666666666654
No 21
>2bh8_A 1B11; transcription, molecular evolution, unique architecture, transcription regulation, phosphorylation; 1.9A {Escherichia coli}
Probab=99.64 E-value=2.4e-16 Score=119.64 Aligned_cols=61 Identities=36% Similarity=0.584 Sum_probs=54.9
Q ss_pred ccccceEEEEeeCCCceeEEecCCCCCceEEeccccccCCc--cccCCCCcEEEEEEeCC-Ccc
Q 047168 4 LTRSTGKVTWFDGAKGYGFIRPDDGGADLFVHQKSIKSDGY--RTLYENQSVEFDVQLEA-DGK 64 (258)
Q Consensus 4 ~~~~~G~vk~f~~~kGfGFI~~~~~~~dvF~H~s~l~~~~~--~~l~~G~~V~F~v~~~~-~G~ 64 (258)
.++++|+|||||.+||||||+++++++|||||+|+|...++ +.|.+|+.|+|++.... .|.
T Consensus 14 ~~~~~G~Vk~fn~~kGfGFI~~~~gg~dvfvH~s~l~~~~~~~~~l~~Ge~V~g~V~~i~~fG~ 77 (101)
T 2bh8_A 14 SGKMTGIVKWFNADKGFGFITPDDGSKDVFVHFSAGSSGAAVRGNPQQGDRVEGKIKSITDFGI 77 (101)
T ss_dssp --CEEEEEEEEEGGGTEEEEEESSSSCEEEEECCCSCSSSCCCCCCCTTCEEEEEEEECCSEEE
T ss_pred cccceeEEEEEECCCCCEEEEeCCCCcEEEEEEEEEecCCccccCCCCCCEEEEEEEEeCCcEE
Confidence 45789999999999999999999999999999999999988 89999999999999865 464
No 22
>2li8_A Protein LIN-28 homolog A; zinc finger, micro RNA, transcription-RNA complex; NMR {Homo sapiens}
Probab=99.52 E-value=8.6e-15 Score=104.66 Aligned_cols=62 Identities=23% Similarity=0.552 Sum_probs=21.6
Q ss_pred CCCCCCCCCCCCCCC-CCCCCCCCcccccCCcccCcccCCCCCCCCCCCCccccCCCCCccCCCCCC
Q 047168 166 PEHFARDCPRQQGGS-NSYNNNSGGCFKCGGYGHLARDCITRGSGGGGGGRCYNCGKSGHLARDCGA 231 (258)
Q Consensus 166 ~GH~~~~Cp~~~~~~-~~~~~~~~~C~~Cg~~GH~~~~C~~~~~~~~~~~~C~~Cg~~GH~~~~Cp~ 231 (258)
.||+++||+++.... .........||+|++.||++++|+.... ...||+|++.||++++||+
T Consensus 2 ~gh~~rdc~~~~~~~~~~~~~r~~~C~~Cg~~GH~a~~C~~~~~----~~~C~~Cg~~GH~ar~Cp~ 64 (74)
T 2li8_A 2 SGLVPRGSHMPKGKSMQKRRSKGDRCYNCGGLDHHAKECKLPPQ----PKKCHFCQSISHMVASCPL 64 (74)
T ss_dssp ----------CCCCCCCSCCSTTSCCTTTCCSSSCTTTCSSCCC----CCCCTTTCCTTSCGGGCTT
T ss_pred CccccCcCCCCCcCccccccCCCCcccccCCcCcCcccCCCCCC----CCccCCcCCcCCccCcCcC
Confidence 466677776654221 1111233445555555555555554211 1244444444444444443
No 23
>3nyb_B Protein AIR2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=99.51 E-value=8.5e-15 Score=106.88 Aligned_cols=61 Identities=28% Similarity=0.507 Sum_probs=25.1
Q ss_pred CCcccccCCCCccccccccccCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCcccCcccCCCC
Q 047168 128 GVVCYNCDGVGHVARECTSNRRNSNYNNNSGGCYNCGDPEHFARDCPRQQGGSNSYNNNSGGCFKCGGYGHLARDCITR 206 (258)
Q Consensus 128 ~~~C~~Cg~~GH~a~~Cp~~~~~~~~~~~~~~C~~Cg~~GH~~~~Cp~~~~~~~~~~~~~~~C~~Cg~~GH~~~~C~~~ 206 (258)
.+.||+|++.||++++||+ ..+||+|+..+|++++|+.+. ....||+|++.||++++||+.
T Consensus 5 ~~~C~~Cg~~GH~~~~Cp~----------~~rcY~c~~~gh~~~~c~~p~--------~~~~CYnCG~~GH~~rdC~~~ 65 (83)
T 3nyb_B 5 KVQCTLCKSKKHSKERCPS----------IWRAYILVDDNEKAKPKVLPF--------HTIYCYNCGGKGHFGDDCKEK 65 (83)
T ss_dssp --CCSSSCCSSSCGGGCGG----------GTCCCCBC---------------------CCCBCSSSSCBSSCGGGCSSC
T ss_pred cCCCCCCCCCCCccccCCC----------cccccccccCCcccccccCCC--------CCCeecccCCCCcCcccCCcc
Confidence 4566666666666666665 224555555555555554431 134455555555555555443
No 24
>2li8_A Protein LIN-28 homolog A; zinc finger, micro RNA, transcription-RNA complex; NMR {Homo sapiens}
Probab=99.45 E-value=7e-14 Score=99.94 Aligned_cols=40 Identities=30% Similarity=0.806 Sum_probs=19.7
Q ss_pred CCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCcccCcccCCC
Q 047168 158 GGCYNCGDPEHFARDCPRQQGGSNSYNNNSGGCFKCGGYGHLARDCIT 205 (258)
Q Consensus 158 ~~C~~Cg~~GH~~~~Cp~~~~~~~~~~~~~~~C~~Cg~~GH~~~~C~~ 205 (258)
..||+|+++||++++|+... ....||+|++.||++++||+
T Consensus 25 ~~C~~Cg~~GH~a~~C~~~~--------~~~~C~~Cg~~GH~ar~Cp~ 64 (74)
T 2li8_A 25 DRCYNCGGLDHHAKECKLPP--------QPKKCHFCQSISHMVASCPL 64 (74)
T ss_dssp SCCTTTCCSSSCTTTCSSCC--------CCCCCTTTCCTTSCGGGCTT
T ss_pred CcccccCCcCcCcccCCCCC--------CCCccCCcCCcCCccCcCcC
Confidence 44555555555555555331 12445555555555555554
No 25
>2a51_A Nucleocapsid protein; sivlhoest, structure, NCP8, viral protein, metal binding protein; NMR {Synthetic}
Probab=99.34 E-value=7.8e-13 Score=82.93 Aligned_cols=38 Identities=45% Similarity=1.014 Sum_probs=29.0
Q ss_pred ccccCCCCCccCCCCCCCCCCCCCccccCCCCCccCCCCCC
Q 047168 215 RCYNCGKSGHLARDCGAGGAGGGGSCFNCGKPGHFARECTK 255 (258)
Q Consensus 215 ~C~~Cg~~GH~~~~Cp~~~~~~~~~C~~Cg~~GH~~~~Cp~ 255 (258)
.||+|++.||++++||.++ ...||+|++.||++++||+
T Consensus 2 ~C~~Cg~~GH~a~~C~~~~---~~~C~~Cg~~GH~~~~C~~ 39 (39)
T 2a51_A 2 TCFNCGKPGHTARMCRQPR---QEGCWNCGSKEHRFAQCPK 39 (39)
T ss_dssp BCTTTCCBSSCTTTCCSCC---CSSCTTTCCSSSCTTTSCC
T ss_pred eeeccCCCCcccccCCCCC---CCccccCCCCCCccCcCcC
Confidence 5777777777777777653 3568888888888888875
No 26
>2ec7_A GAG polyprotein (PR55GAG); nucleocapsid protein, HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus type 2} SCOP: g.40.1.1
Probab=99.28 E-value=2.6e-12 Score=84.56 Aligned_cols=40 Identities=48% Similarity=1.110 Sum_probs=24.1
Q ss_pred ccccCCCCCccCCCCCCCCCCCCCccccCCCCCccCCCCCCCc
Q 047168 215 RCYNCGKSGHLARDCGAGGAGGGGSCFNCGKPGHFARECTKVA 257 (258)
Q Consensus 215 ~C~~Cg~~GH~~~~Cp~~~~~~~~~C~~Cg~~GH~~~~Cp~~~ 257 (258)
.||+|++.||++++||.++ ...||+|++.||++++||++.
T Consensus 8 ~C~~Cg~~GH~a~~C~~~~---~~~C~~Cg~~GH~~~~C~~~~ 47 (49)
T 2ec7_A 8 RCWNCGKEGHSARQCRAPR---RQGCWKCGKTGHVMAKCPERQ 47 (49)
T ss_dssp BCTTTCCBTCCTTTCCCSS---CCSCSSSCCSSCCGGGCCSSC
T ss_pred eeeecCCCCcChhhCcCCC---CCeeCcCCCcCCccCCCcCCC
Confidence 5666666666666665543 235666666666666666653
No 27
>2bl6_A Nucleocapsid protein P11; lentivirus, polyprotein, core protein, retrovirus zinc finger-like domains; NMR {Equine infectious anemia virus}
Probab=99.24 E-value=3.9e-12 Score=78.80 Aligned_cols=36 Identities=53% Similarity=1.364 Sum_probs=26.4
Q ss_pred ccccCCCCCccCCCCCCCCCCCCCccccCCCCCccCCCCCC
Q 047168 215 RCYNCGKSGHLARDCGAGGAGGGGSCFNCGKPGHFARECTK 255 (258)
Q Consensus 215 ~C~~Cg~~GH~~~~Cp~~~~~~~~~C~~Cg~~GH~~~~Cp~ 255 (258)
.||+|++.||++++||.+ ..||+|++.||++++||+
T Consensus 2 ~C~~Cg~~GH~~~~C~~~-----~~C~~Cg~~GH~a~~C~~ 37 (37)
T 2bl6_A 2 TCYNCGKPGHLSSQCRAP-----KVCFKCKQPGHFSKQCRS 37 (37)
T ss_dssp CBSSSCCSSCCTTTSSCB-----TTCSSCCCTTGGGGTTCC
T ss_pred cccccCCCCcchhhCcCc-----CeEccCCCcCCccCcCcC
Confidence 577777777777777763 468888888888888875
No 28
>2ihx_A Nucleocapsid (NC) protein; protein-RNA complex, viral protein/RNA complex; NMR {Rous sarcoma virus}
Probab=99.23 E-value=5.2e-12 Score=86.92 Aligned_cols=47 Identities=32% Similarity=0.775 Sum_probs=30.8
Q ss_pred CCcccccCCcccCcccCCCCCCCCCCCCccccCCCCCccCCCCCCCC
Q 047168 187 SGGCFKCGGYGHLARDCITRGSGGGGGGRCYNCGKSGHLARDCGAGG 233 (258)
Q Consensus 187 ~~~C~~Cg~~GH~~~~C~~~~~~~~~~~~C~~Cg~~GH~~~~Cp~~~ 233 (258)
...||+|++.||++++||+..........||+|+++||++++||+..
T Consensus 4 ~~~C~~Cg~~GH~a~~C~~~~~~~~~~~~C~~Cg~~GH~ar~C~~~~ 50 (61)
T 2ihx_A 4 RGLCYTCGSPGHYQAQCPKKRKSGNSRERCQLCNGMGHNAKQCRKRD 50 (61)
T ss_dssp TTBCSSSCCBTCCGGGCTTTTSSSCCCSBCTTTCCBSSCGGGCCCCC
T ss_pred CCcccccCCCCeehhhCcCCcCCCCCCCeeCCCCCCCCCcCCCcCCC
Confidence 46788888888888888775332222346777777777777776644
No 29
>2ihx_A Nucleocapsid (NC) protein; protein-RNA complex, viral protein/RNA complex; NMR {Rous sarcoma virus}
Probab=99.22 E-value=9.3e-12 Score=85.64 Aligned_cols=46 Identities=39% Similarity=1.015 Sum_probs=23.7
Q ss_pred CCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCcccCcccCCCC
Q 047168 157 SGGCYNCGDPEHFARDCPRQQGGSNSYNNNSGGCFKCGGYGHLARDCITR 206 (258)
Q Consensus 157 ~~~C~~Cg~~GH~~~~Cp~~~~~~~~~~~~~~~C~~Cg~~GH~~~~C~~~ 206 (258)
+..||+|+++||++++||..... ......||+|++.||++++||+.
T Consensus 4 ~~~C~~Cg~~GH~a~~C~~~~~~----~~~~~~C~~Cg~~GH~ar~C~~~ 49 (61)
T 2ihx_A 4 RGLCYTCGSPGHYQAQCPKKRKS----GNSRERCQLCNGMGHNAKQCRKR 49 (61)
T ss_dssp TTBCSSSCCBTCCGGGCTTTTSS----SCCCSBCTTTCCBSSCGGGCCCC
T ss_pred CCcccccCCCCeehhhCcCCcCC----CCCCCeeCCCCCCCCCcCCCcCC
Confidence 34566666666666666554210 01234566666666666666554
No 30
>1a1t_A Nucleocapsid protein; stem-loop RNA, viral protein/RNA complex; NMR {Human immunodeficiency virus 1} SCOP: g.40.1.1 PDB: 1mfs_A 1f6u_A* 1aaf_A 2l4l_A 2exf_A 2jzw_A* 1bj6_A* 1esk_A 1q3y_A 1q3z_A 2e1x_A 2iwj_A
Probab=99.19 E-value=8.1e-12 Score=84.11 Aligned_cols=39 Identities=46% Similarity=1.199 Sum_probs=21.2
Q ss_pred ccccCCCCCccCCCCCCCCCCCCCccccCCCCCccCCCCCCC
Q 047168 215 RCYNCGKSGHLARDCGAGGAGGGGSCFNCGKPGHFARECTKV 256 (258)
Q Consensus 215 ~C~~Cg~~GH~~~~Cp~~~~~~~~~C~~Cg~~GH~~~~Cp~~ 256 (258)
.||+|++.||++++||.++ ...||+|++.||++++||+.
T Consensus 14 ~C~~Cg~~GH~a~~C~~~~---~~~C~~Cg~~GH~~~~C~~~ 52 (55)
T 1a1t_A 14 KCFNCGKEGHIAKNCRAPR---KKGCWKCGKEGHQMKDCTER 52 (55)
T ss_dssp BCTTTCCBSSCGGGCSSCS---CCBCTTTCCBSSCGGGCSSS
T ss_pred ceeeeCCCCcChhhcCCCC---CCEeCCCCCcCCccCCCcCc
Confidence 4555555555555555432 23466666666666666654
No 31
>2cqf_A RNA-binding protein LIN-28; CCHC zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.19 E-value=1.8e-11 Score=84.71 Aligned_cols=45 Identities=24% Similarity=0.693 Sum_probs=32.5
Q ss_pred CCCCcccccCCcccCcccCCCCCCCCCCCCccccCCCCCccCCCCCCCC
Q 047168 185 NNSGGCFKCGGYGHLARDCITRGSGGGGGGRCYNCGKSGHLARDCGAGG 233 (258)
Q Consensus 185 ~~~~~C~~Cg~~GH~~~~C~~~~~~~~~~~~C~~Cg~~GH~~~~Cp~~~ 233 (258)
.....||+|++.||++++||.+.. ...||+|++.||++++||+..
T Consensus 5 ~r~~~C~~Cg~~GH~a~~C~~~~~----~~~C~~Cg~~GH~ar~Cp~~~ 49 (63)
T 2cqf_A 5 SSGDRCYNCGGLDHHAKECKLPPQ----PKKCHFCQSISHMVASCPLKA 49 (63)
T ss_dssp CSCCCCSSSCCSSSCTTTCCSCCC----SSCCTTTCCSSSCTTTCTGGG
T ss_pred CCCCcccccCCCCcChhhCCCCCC----CCccCCcCCcCCccCcCCCcc
Confidence 345678888888888888886421 237888888888888887754
No 32
>1cl4_A Protein (GAG polyprotein); nucleocapsid protein, RNA binding protein, retrovirus, viral protein; NMR {Mason-pfizer monkey virus} SCOP: g.40.1.1 PDB: 1dsv_A
Probab=99.19 E-value=5.3e-12 Score=86.54 Aligned_cols=44 Identities=34% Similarity=0.848 Sum_probs=10.7
Q ss_pred cccccCCcccCcccCCCCCCCCC---CCCccccCCCCCccCCCCCCC
Q 047168 189 GCFKCGGYGHLARDCITRGSGGG---GGGRCYNCGKSGHLARDCGAG 232 (258)
Q Consensus 189 ~C~~Cg~~GH~~~~C~~~~~~~~---~~~~C~~Cg~~GH~~~~Cp~~ 232 (258)
.||+|++.||++++||+...... ....||+|++.||++++||+.
T Consensus 3 ~Cf~Cg~~GH~a~~C~~~~~~~~~~~~~~~C~~Cg~~GH~ar~C~~~ 49 (60)
T 1cl4_A 3 SCFKCGKKGHFAKNCHEHAHNNAEPKVPGLCPRCKRGKHWANECKSK 49 (60)
T ss_dssp --------------------------CCCSCSSCSSCSSCSTTCCCT
T ss_pred ccccCCCCCcCHhhCcCCCCCccccCCCcceeECCCCCCccCcCCCc
Confidence 57777777777777776532110 123455555555555555553
No 33
>2cqf_A RNA-binding protein LIN-28; CCHC zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.18 E-value=2.5e-11 Score=84.00 Aligned_cols=44 Identities=27% Similarity=0.770 Sum_probs=28.3
Q ss_pred CCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCcccCcccCCCC
Q 047168 155 NNSGGCYNCGDPEHFARDCPRQQGGSNSYNNNSGGCFKCGGYGHLARDCITR 206 (258)
Q Consensus 155 ~~~~~C~~Cg~~GH~~~~Cp~~~~~~~~~~~~~~~C~~Cg~~GH~~~~C~~~ 206 (258)
.....||+|+++||++++||.+. ....||+|++.||++++||+.
T Consensus 5 ~r~~~C~~Cg~~GH~a~~C~~~~--------~~~~C~~Cg~~GH~ar~Cp~~ 48 (63)
T 2cqf_A 5 SSGDRCYNCGGLDHHAKECKLPP--------QPKKCHFCQSISHMVASCPLK 48 (63)
T ss_dssp CSCCCCSSSCCSSSCTTTCCSCC--------CSSCCTTTCCSSSCTTTCTGG
T ss_pred CCCCcccccCCCCcChhhCCCCC--------CCCccCCcCCcCCccCcCCCc
Confidence 34456777777777777776541 235677777777777777664
No 34
>2a51_A Nucleocapsid protein; sivlhoest, structure, NCP8, viral protein, metal binding protein; NMR {Synthetic}
Probab=99.17 E-value=1.8e-11 Score=76.63 Aligned_cols=38 Identities=39% Similarity=0.878 Sum_probs=26.5
Q ss_pred cccccCCcccCcccCCCCCCCCCCCCccccCCCCCccCCCCCC
Q 047168 189 GCFKCGGYGHLARDCITRGSGGGGGGRCYNCGKSGHLARDCGA 231 (258)
Q Consensus 189 ~C~~Cg~~GH~~~~C~~~~~~~~~~~~C~~Cg~~GH~~~~Cp~ 231 (258)
.||+|++.||++++||++. ...||+|++.||++++||+
T Consensus 2 ~C~~Cg~~GH~a~~C~~~~-----~~~C~~Cg~~GH~~~~C~~ 39 (39)
T 2a51_A 2 TCFNCGKPGHTARMCRQPR-----QEGCWNCGSKEHRFAQCPK 39 (39)
T ss_dssp BCTTTCCBSSCTTTCCSCC-----CSSCTTTCCSSSCTTTSCC
T ss_pred eeeccCCCCcccccCCCCC-----CCccccCCCCCCccCcCcC
Confidence 5777777777777777642 1367777777777777774
No 35
>2bl6_A Nucleocapsid protein P11; lentivirus, polyprotein, core protein, retrovirus zinc finger-like domains; NMR {Equine infectious anemia virus}
Probab=99.13 E-value=3e-11 Score=74.76 Aligned_cols=36 Identities=33% Similarity=1.063 Sum_probs=26.6
Q ss_pred cccccCCcccCcccCCCCCCCCCCCCccccCCCCCccCCCCCC
Q 047168 189 GCFKCGGYGHLARDCITRGSGGGGGGRCYNCGKSGHLARDCGA 231 (258)
Q Consensus 189 ~C~~Cg~~GH~~~~C~~~~~~~~~~~~C~~Cg~~GH~~~~Cp~ 231 (258)
.||+|++.||++++||++ ..||+|++.||++++||+
T Consensus 2 ~C~~Cg~~GH~~~~C~~~-------~~C~~Cg~~GH~a~~C~~ 37 (37)
T 2bl6_A 2 TCYNCGKPGHLSSQCRAP-------KVCFKCKQPGHFSKQCRS 37 (37)
T ss_dssp CBSSSCCSSCCTTTSSCB-------TTCSSCCCTTGGGGTTCC
T ss_pred cccccCCCCcchhhCcCc-------CeEccCCCcCCccCcCcC
Confidence 577777777777777764 267888888888887773
No 36
>2ec7_A GAG polyprotein (PR55GAG); nucleocapsid protein, HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus type 2} SCOP: g.40.1.1
Probab=99.11 E-value=7.5e-11 Score=77.50 Aligned_cols=39 Identities=38% Similarity=0.945 Sum_probs=20.5
Q ss_pred CcccccCCcccCcccCCCCCCCCCCCCccccCCCCCccCCCCCC
Q 047168 188 GGCFKCGGYGHLARDCITRGSGGGGGGRCYNCGKSGHLARDCGA 231 (258)
Q Consensus 188 ~~C~~Cg~~GH~~~~C~~~~~~~~~~~~C~~Cg~~GH~~~~Cp~ 231 (258)
..||+|++.||++++||.+. ...||+|++.||++++||+
T Consensus 7 ~~C~~Cg~~GH~a~~C~~~~-----~~~C~~Cg~~GH~~~~C~~ 45 (49)
T 2ec7_A 7 IRCWNCGKEGHSARQCRAPR-----RQGCWKCGKTGHVMAKCPE 45 (49)
T ss_dssp CBCTTTCCBTCCTTTCCCSS-----CCSCSSSCCSSCCGGGCCS
T ss_pred CeeeecCCCCcChhhCcCCC-----CCeeCcCCCcCCccCCCcC
Confidence 45555555555555555431 1245555555555555554
No 37
>1a1t_A Nucleocapsid protein; stem-loop RNA, viral protein/RNA complex; NMR {Human immunodeficiency virus 1} SCOP: g.40.1.1 PDB: 1mfs_A 1f6u_A* 1aaf_A 2l4l_A 2exf_A 2jzw_A* 1bj6_A* 1esk_A 1q3y_A 1q3z_A 2e1x_A 2iwj_A
Probab=99.05 E-value=8.6e-11 Score=79.04 Aligned_cols=41 Identities=39% Similarity=0.999 Sum_probs=28.6
Q ss_pred CCcccccCCcccCcccCCCCCCCCCCCCccccCCCCCccCCCCCCC
Q 047168 187 SGGCFKCGGYGHLARDCITRGSGGGGGGRCYNCGKSGHLARDCGAG 232 (258)
Q Consensus 187 ~~~C~~Cg~~GH~~~~C~~~~~~~~~~~~C~~Cg~~GH~~~~Cp~~ 232 (258)
...||+|++.||++++||.+. ...||+|++.||++++||+.
T Consensus 12 ~~~C~~Cg~~GH~a~~C~~~~-----~~~C~~Cg~~GH~~~~C~~~ 52 (55)
T 1a1t_A 12 TVKCFNCGKEGHIAKNCRAPR-----KKGCWKCGKEGHQMKDCTER 52 (55)
T ss_dssp TCBCTTTCCBSSCGGGCSSCS-----CCBCTTTCCBSSCGGGCSSS
T ss_pred CcceeeeCCCCcChhhcCCCC-----CCEeCCCCCcCCccCCCcCc
Confidence 456777777777777777642 13677777777777777764
No 38
>1cl4_A Protein (GAG polyprotein); nucleocapsid protein, RNA binding protein, retrovirus, viral protein; NMR {Mason-pfizer monkey virus} SCOP: g.40.1.1 PDB: 1dsv_A
Probab=99.02 E-value=8.4e-11 Score=80.51 Aligned_cols=17 Identities=35% Similarity=1.083 Sum_probs=0.0
Q ss_pred cccccCCCCcccccccc
Q 047168 130 VCYNCDGVGHVARECTS 146 (258)
Q Consensus 130 ~C~~Cg~~GH~a~~Cp~ 146 (258)
.||+|++.||++++||.
T Consensus 3 ~Cf~Cg~~GH~a~~C~~ 19 (60)
T 1cl4_A 3 SCFKCGKKGHFAKNCHE 19 (60)
T ss_dssp -----------------
T ss_pred ccccCCCCCcCHhhCcC
Confidence 57777777777777765
No 39
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=98.99 E-value=1.8e-10 Score=92.93 Aligned_cols=43 Identities=26% Similarity=0.711 Sum_probs=30.2
Q ss_pred CCcccccCCcccCcccCCCCCCCCCCCCccccCCCCCccCCCCCCCC
Q 047168 187 SGGCFKCGGYGHLARDCITRGSGGGGGGRCYNCGKSGHLARDCGAGG 233 (258)
Q Consensus 187 ~~~C~~Cg~~GH~~~~C~~~~~~~~~~~~C~~Cg~~GH~~~~Cp~~~ 233 (258)
...||+|++.||++++||.+.. ...||+|++.||++++||+..
T Consensus 97 ~~~C~~Cg~~GH~a~~C~~~~~----~~~C~~Cg~~GH~~r~Cp~~~ 139 (148)
T 3ts2_A 97 GDRCYNCGGLDHHAKECKLPPQ----PKKCHFCQSINHMVASCPLKA 139 (148)
T ss_dssp SCCCTTTCCSSCCGGGCCSCCC----CCCCTTTCCSSCCGGGCTTTT
T ss_pred CCcccEeCCccchhhhCCCCCC----CCcccccCCcCCEeccCcCCC
Confidence 4578888888888888887432 136777777777777777643
No 40
>1dsq_A Nucleic acid binding protein P14; CCHC type zinc finger, virus/viral protein; NMR {Mouse mammary tumor virus} SCOP: g.40.1.1
Probab=97.99 E-value=2.6e-06 Score=48.15 Aligned_cols=18 Identities=50% Similarity=1.337 Sum_probs=9.8
Q ss_pred ccccCCCCCccCCCCCCC
Q 047168 215 RCYNCGKSGHLARDCGAG 232 (258)
Q Consensus 215 ~C~~Cg~~GH~~~~Cp~~ 232 (258)
.||+|++.||++++||++
T Consensus 4 ~Cf~CG~~GH~ardC~~~ 21 (26)
T 1dsq_A 4 VCFSCGKTGHIKRDCKEE 21 (26)
T ss_dssp BCTTTCCBSSCTTTTTCC
T ss_pred eeEeCCCCCcccccCCCc
Confidence 455555555555555543
No 41
>1dsq_A Nucleic acid binding protein P14; CCHC type zinc finger, virus/viral protein; NMR {Mouse mammary tumor virus} SCOP: g.40.1.1
Probab=97.94 E-value=4.3e-06 Score=47.19 Aligned_cols=18 Identities=50% Similarity=1.318 Sum_probs=10.0
Q ss_pred ccccCCCCCccCCCCCCC
Q 047168 239 SCFNCGKPGHFARECTKV 256 (258)
Q Consensus 239 ~C~~Cg~~GH~~~~Cp~~ 256 (258)
.||+|++.||++++||++
T Consensus 4 ~Cf~CG~~GH~ardC~~~ 21 (26)
T 1dsq_A 4 VCFSCGKTGHIKRDCKEE 21 (26)
T ss_dssp BCTTTCCBSSCTTTTTCC
T ss_pred eeEeCCCCCcccccCCCc
Confidence 455555555555555554
No 42
>1a6b_B Momulv, zinc finger protein NCP10; nucleocapsid protein, intercalation, nucleic acid, retrovirus, viral protein/DNA complex; HET: DNA; NMR {Synthetic} SCOP: g.40.1.1
Probab=97.80 E-value=1.3e-05 Score=49.93 Aligned_cols=19 Identities=37% Similarity=0.870 Sum_probs=11.8
Q ss_pred ccccCCCCCccCCCCCCCC
Q 047168 215 RCYNCGKSGHLARDCGAGG 233 (258)
Q Consensus 215 ~C~~Cg~~GH~~~~Cp~~~ 233 (258)
.||+|++.||++++||.+.
T Consensus 12 ~C~~Cgk~GH~ardCP~~~ 30 (40)
T 1a6b_B 12 QCAYCKEKGHWAKDCPKKP 30 (40)
T ss_dssp SCSSSCCTTCCTTSCSSSC
T ss_pred eeeECCCCCcchhhCcCCc
Confidence 5666666666666666644
No 43
>1nc8_A Nucleocapsid protein; HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus 2} SCOP: g.40.1.1 PDB: 2di2_A
Probab=97.78 E-value=7.5e-06 Score=47.39 Aligned_cols=18 Identities=67% Similarity=1.394 Sum_probs=9.1
Q ss_pred ccccCCCCCccCCCCCCC
Q 047168 215 RCYNCGKSGHLARDCGAG 232 (258)
Q Consensus 215 ~C~~Cg~~GH~~~~Cp~~ 232 (258)
.||||+++||++++||.+
T Consensus 8 ~C~nCgk~GH~ar~C~~p 25 (29)
T 1nc8_A 8 RCWNCGKEGHSARQCRAP 25 (29)
T ss_dssp BCTTTSCBSSCGGGCCSS
T ss_pred EEEECCccccCHhHCccc
Confidence 455555555555555443
No 44
>1nc8_A Nucleocapsid protein; HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus 2} SCOP: g.40.1.1 PDB: 2di2_A
Probab=97.74 E-value=1.4e-05 Score=46.27 Aligned_cols=18 Identities=44% Similarity=0.979 Sum_probs=8.7
Q ss_pred CcccccCCcccCcccCCC
Q 047168 188 GGCFKCGGYGHLARDCIT 205 (258)
Q Consensus 188 ~~C~~Cg~~GH~~~~C~~ 205 (258)
..||+|++.||++++|+.
T Consensus 7 ~~C~nCgk~GH~ar~C~~ 24 (29)
T 1nc8_A 7 IRCWNCGKEGHSARQCRA 24 (29)
T ss_dssp CBCTTTSCBSSCGGGCCS
T ss_pred CEEEECCccccCHhHCcc
Confidence 345555555555555544
No 45
>1a6b_B Momulv, zinc finger protein NCP10; nucleocapsid protein, intercalation, nucleic acid, retrovirus, viral protein/DNA complex; HET: DNA; NMR {Synthetic} SCOP: g.40.1.1
Probab=97.51 E-value=5.3e-05 Score=47.11 Aligned_cols=23 Identities=30% Similarity=0.645 Sum_probs=18.5
Q ss_pred CCCCcccccCCcccCcccCCCCC
Q 047168 185 NNSGGCFKCGGYGHLARDCITRG 207 (258)
Q Consensus 185 ~~~~~C~~Cg~~GH~~~~C~~~~ 207 (258)
.....||+|++.|||+++||...
T Consensus 8 ~~~~~C~~Cgk~GH~ardCP~~~ 30 (40)
T 1a6b_B 8 LDRDQCAYCKEKGHWAKDCPKKP 30 (40)
T ss_dssp CCSSSCSSSCCTTCCTTSCSSSC
T ss_pred CCCCeeeECCCCCcchhhCcCCc
Confidence 44678888988899999998863
No 46
>1u6p_A GAG polyprotein; MLV, A-minor K-turn, stem loop, bulge, G-U mismatch, G-A MIS U mismatch, A-C mismatch, zinc finger, NC, viral protein-RN; HET: AP7; NMR {Moloney murine leukemia virus} SCOP: g.40.1.1 PDB: 1wwd_A 1wwe_A 1wwf_A 1wwg_A
Probab=97.44 E-value=5.6e-05 Score=50.50 Aligned_cols=20 Identities=35% Similarity=0.828 Sum_probs=13.9
Q ss_pred CccccCCCCCccCCCCCCCC
Q 047168 214 GRCYNCGKSGHLARDCGAGG 233 (258)
Q Consensus 214 ~~C~~Cg~~GH~~~~Cp~~~ 233 (258)
..||+|++.||+++|||.+.
T Consensus 24 ~~C~~Cge~GH~ardCp~~~ 43 (56)
T 1u6p_A 24 DQCAYCKEKGHWAKDCPKKP 43 (56)
T ss_dssp TBCSSSCCBSSCGGGCTTCC
T ss_pred CcceeCCCCCcccccCcCCc
Confidence 46777777777777777654
No 47
>1u6p_A GAG polyprotein; MLV, A-minor K-turn, stem loop, bulge, G-U mismatch, G-A MIS U mismatch, A-C mismatch, zinc finger, NC, viral protein-RN; HET: AP7; NMR {Moloney murine leukemia virus} SCOP: g.40.1.1 PDB: 1wwd_A 1wwe_A 1wwf_A 1wwg_A
Probab=97.28 E-value=0.00039 Score=46.36 Aligned_cols=21 Identities=29% Similarity=0.673 Sum_probs=17.5
Q ss_pred CCCcccccCCCCccccccccc
Q 047168 127 GGVVCYNCDGVGHVARECTSN 147 (258)
Q Consensus 127 ~~~~C~~Cg~~GH~a~~Cp~~ 147 (258)
....||+|++.||++++||.+
T Consensus 22 ~~~~C~~Cge~GH~ardCp~~ 42 (56)
T 1u6p_A 22 DRDQCAYCKEKGHWAKDCPKK 42 (56)
T ss_dssp CTTBCSSSCCBSSCGGGCTTC
T ss_pred CCCcceeCCCCCcccccCcCC
Confidence 367899999999999999873
No 48
>2ysa_A Retinoblastoma-binding protein 6; zinc finger, CCHC, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.19 E-value=0.00016 Score=48.15 Aligned_cols=21 Identities=38% Similarity=0.947 Sum_probs=17.1
Q ss_pred CCCcccccCCcccCcccCCCC
Q 047168 186 NSGGCFKCGGYGHLARDCITR 206 (258)
Q Consensus 186 ~~~~C~~Cg~~GH~~~~C~~~ 206 (258)
....||+|+++||++++||..
T Consensus 6 ~~~~C~kCGk~GH~~k~Cp~~ 26 (55)
T 2ysa_A 6 SGYTCFRCGKPGHYIKNCPTN 26 (55)
T ss_dssp SSCCCTTTCCTTSCGGGCSGG
T ss_pred CCCccccCCCcCcccccCCCC
Confidence 356899999999999999854
No 49
>1a62_A RHO; transcription termination, termination, RNA binding domain, transcription regulation, OB fold, F1-ATPase; 1.55A {Escherichia coli BL21} SCOP: a.140.3.1 b.40.4.5 PDB: 1a63_A 2a8v_A 1a8v_A
Probab=96.97 E-value=0.00091 Score=52.33 Aligned_cols=65 Identities=22% Similarity=0.456 Sum_probs=48.3
Q ss_pred cceEEEEeeCCCceeEEecCC-----CCCceEEeccccccCCccccCCCCcEEEEEEeCCCcc--ceeeccccCCCC
Q 047168 7 STGKVTWFDGAKGYGFIRPDD-----GGADLFVHQKSIKSDGYRTLYENQSVEFDVQLEADGK--YQALDVTAPGGA 76 (258)
Q Consensus 7 ~~G~vk~f~~~kGfGFI~~~~-----~~~dvF~H~s~l~~~~~~~l~~G~~V~F~v~~~~~G~--~~A~~V~~~~g~ 76 (258)
+.|++.-- .+||||+.+++ +.+||||..+.|...+ |..||.|+-.+.....+. ...+.|..+.+.
T Consensus 51 ~~Gvlei~--~dG~GFlr~~~~~y~~~~~DiyVs~~~irrf~---lr~GD~V~g~vr~~~~~ek~~~l~~v~~vng~ 122 (130)
T 1a62_A 51 GDGVLEIL--QDGFGFLRSADSSYLAGPDDIYVSPSQIRRFN---LRTGDTISGKIRPPKEGERYFALLKVNEVNFD 122 (130)
T ss_dssp EEEEEEEC--TTSCEEEECGGGTTCCCTTCEEECHHHHHHTT---CCTTCEEEEEEECCCTTCCSEEEEEEEEETTB
T ss_pred EEEEEEEc--CCCeEEEecCCcCCCCCCCCEEECHHHHhHhC---CCCCCEEEEEEeCCCCCCcccceeEEEeECCC
Confidence 56776654 57999999883 6799999999998764 899999999998876542 133455555554
No 50
>2ysa_A Retinoblastoma-binding protein 6; zinc finger, CCHC, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.65 E-value=0.00098 Score=44.24 Aligned_cols=19 Identities=32% Similarity=1.025 Sum_probs=14.4
Q ss_pred CCcccccCCCCcccccccc
Q 047168 128 GVVCYNCDGVGHVARECTS 146 (258)
Q Consensus 128 ~~~C~~Cg~~GH~a~~Cp~ 146 (258)
...||.|++.||++++||+
T Consensus 7 ~~~C~kCGk~GH~~k~Cp~ 25 (55)
T 2ysa_A 7 GYTCFRCGKPGHYIKNCPT 25 (55)
T ss_dssp SCCCTTTCCTTSCGGGCSG
T ss_pred CCccccCCCcCcccccCCC
Confidence 4578888888888888875
No 51
>2k52_A Uncharacterized protein MJ1198; metal-binding, zinc, zinc-finger, structural genomics, PSI-2, protein structure initiative; NMR {Methanocaldococcus jannaschii}
Probab=93.15 E-value=0.19 Score=35.14 Aligned_cols=53 Identities=17% Similarity=0.172 Sum_probs=40.6
Q ss_pred ccccceEEEEeeCCCcee-EEecCCCCCceEEeccccccCCccccCCCCcEEEEEEeC
Q 047168 4 LTRSTGKVTWFDGAKGYG-FIRPDDGGADLFVHQKSIKSDGYRTLYENQSVEFDVQLE 60 (258)
Q Consensus 4 ~~~~~G~vk~f~~~kGfG-FI~~~~~~~dvF~H~s~l~~~~~~~l~~G~~V~F~v~~~ 60 (258)
.+.+.|+|+...+ || ||..++ ..+-|+|+|.+...-+..+.+||.|...+..-
T Consensus 6 G~iv~G~V~~v~~---~G~fV~l~~-~~~Gllh~sel~~~~~~~~~~Gd~V~v~V~~v 59 (80)
T 2k52_A 6 GKFYKGVVTRIEK---YGAFINLNE-QVRGLLRPRDMISLRLENLNVGDEIIVQAIDV 59 (80)
T ss_dssp TCEEEEEEEEEET---TEEEEEEET-TEEEEECGGGCSSCCGGGCCTTCEEEEEEEEE
T ss_pred CCEEEEEEEEEeC---CEEEEEECC-CCEEEEEHHHCCcccceeeCCCCEEEEEEEEE
Confidence 3578999999854 66 555554 58999999999754334699999999988764
No 52
>2id0_A Exoribonuclease 2; RNAse, exonuclease, hydrolyase, mRNA decay, RNR family, hydrolase; 2.35A {Escherichia coli} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16 PDB: 2ix0_A* 2ix1_A
Probab=93.01 E-value=0.069 Score=52.17 Aligned_cols=61 Identities=20% Similarity=0.292 Sum_probs=46.5
Q ss_pred cccceEEEEeeCCCceeEEecCCCCCceEEeccccccCCccccCCCCcEEEEEEeCCCccceeeccccCC
Q 047168 5 TRSTGKVTWFDGAKGYGFIRPDDGGADLFVHQKSIKSDGYRTLYENQSVEFDVQLEADGKYQALDVTAPG 74 (258)
Q Consensus 5 ~~~~G~vk~f~~~kGfGFI~~~~~~~dvF~H~s~l~~~~~~~l~~G~~V~F~v~~~~~G~~~A~~V~~~~ 74 (258)
..+.|+|+-= .+||||+.+++ .+|||+.-..+.. .-.||+|...+... +++++|.-|.+++
T Consensus 20 ~~~~G~~~~~--~~GfgF~~~d~-~~difi~~~~~~~-----a~~GD~V~v~i~~~-~~~~eg~v~~ile 80 (644)
T 2id0_A 20 PRAEGVVKAT--EKGFGFLEVDA-QKSYFIPPPQMKK-----VMHGDRIIAVIHSE-KERESAEPEELVE 80 (644)
T ss_dssp CEEEEEEECC--SSSCEEEECSS-SCEEEECHHHHTT-----SCTTCEEEEEEECC-SSSCEEEEEEEEE
T ss_pred CeEEEEEEEe--cCCcEEEEECC-CCCEEECHHHHhc-----CCCCCEEEEEEecC-CCCeEEEEEEEEe
Confidence 3578998864 79999999986 5899999887754 46899999988765 3456666665554
No 53
>2cqo_A Nucleolar protein of 40 kDa; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.00 E-value=0.22 Score=37.80 Aligned_cols=54 Identities=20% Similarity=0.203 Sum_probs=39.8
Q ss_pred ccccceEEEEeeCCCcee-EEecCCCCCceEEeccccccCCc----cccCCCCcEEEEEEeC
Q 047168 4 LTRSTGKVTWFDGAKGYG-FIRPDDGGADLFVHQKSIKSDGY----RTLYENQSVEFDVQLE 60 (258)
Q Consensus 4 ~~~~~G~vk~f~~~kGfG-FI~~~~~~~dvF~H~s~l~~~~~----~~l~~G~~V~F~v~~~ 60 (258)
...+.|+|+...+ || ||..+....+-|+|++.|...-+ ..+++||.|...|..-
T Consensus 23 G~iv~G~V~~I~~---fGaFV~l~g~~~~Glvhisel~~~~~~~~~~~~~~Gd~V~VkV~~v 81 (119)
T 2cqo_A 23 YTIFQGEVAMVTD---YGAFIKIPGCRKQGLVHRTHMSSCRVDKPSEIVDVGDKVWVKLIGR 81 (119)
T ss_dssp TCEEEEEEEEEET---TEEEEECTTCSSCEEEEHHHHCSSCCSCHHHHCCTTCEEEEEEEEE
T ss_pred CCEEEEEEEEEeC---ceEEEEECCCcEEEEEEHHHCCcccccChhhcCCCCCEEEEEEEEE
Confidence 3568999999954 66 66654334799999999965322 3488999999888764
No 54
>3go5_A Multidomain protein with S1 RNA-binding domains; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.40A {Streptococcus pneumoniae}
Probab=91.04 E-value=0.63 Score=40.75 Aligned_cols=63 Identities=11% Similarity=0.050 Sum_probs=45.1
Q ss_pred ccccceEEEEeeCCCceeEEecCCC-CCceEEeccccccCCccccCCCCcEEEEEEeCCCccceee
Q 047168 4 LTRSTGKVTWFDGAKGYGFIRPDDG-GADLFVHQKSIKSDGYRTLYENQSVEFDVQLEADGKYQAL 68 (258)
Q Consensus 4 ~~~~~G~vk~f~~~kGfGFI~~~~~-~~dvF~H~s~l~~~~~~~l~~G~~V~F~v~~~~~G~~~A~ 68 (258)
.....|+|++.+ +.||....... +.|+|+|+|.+...--..+.+|+.|...+..++++++.|.
T Consensus 70 G~~~~g~V~~v~--~~~GaFVdiG~~~~d~lvp~sel~~~~~~~~~~Gd~v~v~l~iD~~~Ri~ls 133 (285)
T 3go5_A 70 DQFGWGRVTEVR--KDLGVFVDTGLPDKEIVVSLDILPELKELWPKKGDQLYIRLEVDKKDRIWGL 133 (285)
T ss_dssp SSCEEEEEEEEE--TTTEEEEECSCTTCCEEEEGGGSCSSGGGSCCTTCEEEEEEEECTTSCEEEE
T ss_pred CCEEEEEEEEEc--cCceEEEEECCCCcEEEEEHHHCCcccccccCCCCEEEEEEEECCCCcEEEE
Confidence 356789999884 44774443443 4799999999865322357999999888877777776665
No 55
>2b8k_G B16, DNA-directed RNA polymerase II 19 kDa polypeptide; DNA-dependent RNA polymerase, cellular RNA polymerase; 4.15A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.230.1.1
Probab=91.01 E-value=0.37 Score=40.48 Aligned_cols=80 Identities=13% Similarity=0.132 Sum_probs=45.9
Q ss_pred cccceEEEEeeCCCceeEEecCCCCCceEEeccccccC------Cc--------cccCCCCcEEEEEEeCCC--ccceee
Q 047168 5 TRSTGKVTWFDGAKGYGFIRPDDGGADLFVHQKSIKSD------GY--------RTLYENQSVEFDVQLEAD--GKYQAL 68 (258)
Q Consensus 5 ~~~~G~vk~f~~~kGfGFI~~~~~~~dvF~H~s~l~~~------~~--------~~l~~G~~V~F~v~~~~~--G~~~A~ 68 (258)
+.+.|+|+.... ||+...... .|.|||+|.|... .. +.+++||.|++.|..-+. ....++
T Consensus 85 ev~~G~V~~vt~---fG~FVelg~-~dGlVhiS~l~d~~~~d~~~~~w~~~~~~~~~~~Gd~VrVkV~~vd~~~~~i~~I 160 (215)
T 2b8k_G 85 EVVDGTVVSCSQ---HGFEVQVGP-MKVFVTKHLMPQDLTFNAGSNPPSYQSSEDVITIKSRIRVKIEGCISQVSSIHAI 160 (215)
T ss_dssp EEEEEEEEEEET---TEEEEECTT-SEEEEEGGGSCSSCCCBSSCSSCEEECSSCEEETTCEEEEEEEEEEEETTEEEEE
T ss_pred CEEEEEEEEEec---ceEEEEecC-cEEEEEHHHCCccceeccccccceeeccccEECCCCEEEEEEEEEEcCCCccEEE
Confidence 568899999863 787665555 8999999998532 00 348899999999877432 112222
Q ss_pred -ccccCCCCcccCCCCCCCCC
Q 047168 69 -DVTAPGGAPVHSSKNNNTNN 88 (258)
Q Consensus 69 -~V~~~~g~~~~~s~~~~~g~ 88 (258)
.+..+...++...+++-+.|
T Consensus 161 gSmk~~~LG~~~~~~~~~~~~ 181 (215)
T 2b8k_G 161 GSIKEDYLGAISHEKRRWKKN 181 (215)
T ss_dssp EECCSTTCEEC----------
T ss_pred EEcCCCCCCCcchhhHHHHhh
Confidence 34444455566666665554
No 56
>2khi_A 30S ribosomal protein S1; acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=90.80 E-value=1.6 Score=32.54 Aligned_cols=55 Identities=24% Similarity=0.225 Sum_probs=39.9
Q ss_pred ccccceEEEEeeCCCceeEEecCCCCCceEEeccccccC-----CccccCCCCcEEEEEEeCC
Q 047168 4 LTRSTGKVTWFDGAKGYGFIRPDDGGADLFVHQKSIKSD-----GYRTLYENQSVEFDVQLEA 61 (258)
Q Consensus 4 ~~~~~G~vk~f~~~kGfGFI~~~~~~~dvF~H~s~l~~~-----~~~~l~~G~~V~F~v~~~~ 61 (258)
.+.+.|+|+...+ ||+....+.+.+.|+|++.|... .-..+.+||.|...|..-+
T Consensus 31 G~~~~G~V~~v~~---~G~FV~l~~~~~Glvhisel~~~~~~~~~~~~~~vGd~V~vkV~~vd 90 (115)
T 2khi_A 31 GTKLTGRVTNLTD---YGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLDID 90 (115)
T ss_dssp SCEEEEEEEEEET---TEEEEECSTTCEEEEETTSSSCSSTTCSSTTTCCTTCEEEEEEEEEE
T ss_pred CCEEEEEEEEEEC---CEEEEEECCCCEEEEEHHHCCccccccCcccEECCCCEEEEEEEEEE
Confidence 3568999999864 67444444458999999999542 1235899999999887743
No 57
>2eqs_A ATP-dependent RNA helicase DHX8; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=90.44 E-value=1 Score=32.99 Aligned_cols=57 Identities=23% Similarity=0.304 Sum_probs=41.9
Q ss_pred cccceEEEEeeCCCcee-EEecCC--CCCceEEeccccccCC-----ccccCCCCcEEEEEEeCCCcc
Q 047168 5 TRSTGKVTWFDGAKGYG-FIRPDD--GGADLFVHQKSIKSDG-----YRTLYENQSVEFDVQLEADGK 64 (258)
Q Consensus 5 ~~~~G~vk~f~~~kGfG-FI~~~~--~~~dvF~H~s~l~~~~-----~~~l~~G~~V~F~v~~~~~G~ 64 (258)
+.+.|+|+... -|| ||..++ ...+-|+|+|.|.... ...+++||.|...|..-+.++
T Consensus 14 ~i~~G~V~~v~---~fG~FV~l~~~~~~~~Glvhisel~~~~~~~~~~~~~~~Gd~V~VkV~~vd~~~ 78 (103)
T 2eqs_A 14 DIYNGKVTSIM---QFGCFVQLEGLRKRWEGLVHISELRREGRVANVADVVSKGQRVKVKVLSFTGTK 78 (103)
T ss_dssp CEEEEEEEEEC---SSCEEEEECSSSSCCEEEECGGGTSSSSCCCCHHHHCCTTCEEEEEEEEEETTE
T ss_pred CEEEEEEEEEe---ccEEEEEEcCCCCCeEEEEEHHHCCCCcccCCcccEeCCCCEEEEEEEEEECCe
Confidence 56899999984 377 667665 2689999999994321 135899999999988765553
No 58
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=89.26 E-value=0.3 Score=45.10 Aligned_cols=66 Identities=17% Similarity=0.384 Sum_probs=47.6
Q ss_pred cceEEEEeeCCCceeEEecC-----CCCCceEEeccccccCCccccCCCCcEEEEEEeCCCcc--ceeeccccCCCCc
Q 047168 7 STGKVTWFDGAKGYGFIRPD-----DGGADLFVHQKSIKSDGYRTLYENQSVEFDVQLEADGK--YQALDVTAPGGAP 77 (258)
Q Consensus 7 ~~G~vk~f~~~kGfGFI~~~-----~~~~dvF~H~s~l~~~~~~~l~~G~~V~F~v~~~~~G~--~~A~~V~~~~g~~ 77 (258)
..|++--. ..||||+.+. .+.+||||-.+.|+..+ |+.||.|+=.+.....+. .....|..+.+.+
T Consensus 58 ~~g~le~~--~~g~gflr~~~~~y~~~~~d~yvs~~~ir~~~---lr~gd~v~g~~r~~~~~e~~~~l~~v~~vng~~ 130 (427)
T 3l0o_A 58 GEGVLEIH--PEGFGFLRRIEDNLLPSNDDIYISPSQIRKFN---LNTGDIISGVIRKPKEGEKYFAMIKIEAINYRP 130 (427)
T ss_dssp EEEEEEEC--TTSCEEEECGGGTTCCCSSCEEECHHHHHHTT---CCTTCEEEEEEECCCSSSCSEEEEEEEEETTEE
T ss_pred EEEEEEEc--CCCceEeeCCccCCCCCCCCeeeCHHHHHhcC---CCCCCEEEEEEeCCCCCcccccceEEEecCCCC
Confidence 44555544 5799999877 46899999999998875 899999999888765542 2234455555543
No 59
>2k4k_A GSP13, general stress protein 13; cytoplasm, stress response, RNA binding protein; NMR {Bacillus subtilis}
Probab=88.19 E-value=0.77 Score=35.26 Aligned_cols=53 Identities=25% Similarity=0.224 Sum_probs=39.0
Q ss_pred cccceEEEEeeCCCceeEEecCCCCCceEEeccccccCC----ccccCCCCcEEEEEEeC
Q 047168 5 TRSTGKVTWFDGAKGYGFIRPDDGGADLFVHQKSIKSDG----YRTLYENQSVEFDVQLE 60 (258)
Q Consensus 5 ~~~~G~vk~f~~~kGfGFI~~~~~~~dvF~H~s~l~~~~----~~~l~~G~~V~F~v~~~ 60 (258)
+.+.|+|+...+ ||+....+.+.+-|+|++.|...- ...+.+||.|...|..-
T Consensus 9 ~iv~G~V~~i~~---~G~FV~l~~~~~Glihisel~~~~~~~~~~~~~vGd~V~vkV~~v 65 (130)
T 2k4k_A 9 SVYTGKVTGLQA---YGAFVALDEETQGLVHISEVTHGFVKDINEHLSVGDEVQVKVLAV 65 (130)
T ss_dssp CEEEEEEEEEET---TEEEEEEETTEEEEEEGGGTSSSCCSCGGGTCCTTCEEEEEEEEE
T ss_pred CEEEEEEEEEeC---CeEEEEECCCcEEEEEHHHCCcccccCccccCCCCCEEEEEEEEE
Confidence 568999999843 565444444589999999996432 14589999999888764
No 60
>2l55_A SILB,silver efflux protein, MFP component of the components proton antiporter metal...; APO form, AG(I)-binding site; NMR {Cupriavidus metallidurans}
Probab=88.12 E-value=0.6 Score=33.11 Aligned_cols=63 Identities=13% Similarity=0.165 Sum_probs=40.4
Q ss_pred ccceEEEEeeCCCceeEEecCCCC--------CceEEeccccccCCccccCCCCcEEEEEEeCCCccceeeccccCC
Q 047168 6 RSTGKVTWFDGAKGYGFIRPDDGG--------ADLFVHQKSIKSDGYRTLYENQSVEFDVQLEADGKYQALDVTAPG 74 (258)
Q Consensus 6 ~~~G~vk~f~~~kGfGFI~~~~~~--------~dvF~H~s~l~~~~~~~l~~G~~V~F~v~~~~~G~~~A~~V~~~~ 74 (258)
..+|+|+.++... |+...+. .-.-|.+.+ ...+..|++|+.|+|+++..+.|.++-+.|+..+
T Consensus 5 ~~~G~V~~vd~~~----iTi~H~pI~~l~wPaMTM~F~v~~--~~~l~~lk~Gd~V~F~~~~~~~g~~~it~i~~~~ 75 (82)
T 2l55_A 5 RAVGRIQSIGERS----LIIAHEAIPSAQWGAMTMEFAAPP--AGLPQGLKAGDRVAFSFRLDPHGMATLVTVAPQV 75 (82)
T ss_dssp EEEEEEEECCSSE----EEEEECCCTTTTCCCEEEEEECCT--TCCCSSCSTTCEEEEEEEEETTTEEEEEEEEECC
T ss_pred EEeEEEEEEcccc----EEEecCCccccCCCceEEEEEcCC--hhHhhcCCCCCEEEEEEEECCCCeEEEEEEEecC
Confidence 3579999998765 6543221 122233322 2235679999999999999887447777776543
No 61
>1y14_B B16, RPB7, DNA-directed RNA polymerase II 19 kDa polypeptide; transferase; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.230.1.1 PDB: 1nt9_G 1wcm_G 1pqv_G 1y1v_G 1y1w_G 1y1y_G 1y77_G* 2b63_G* 2ja5_G* 2ja6_G* 2ja7_G* 2ja8_G* 2r7z_G 2r92_G 2r93_G 2vum_G* 3fki_G 3h3v_H 3hou_G* 3hov_G* ...
Probab=87.45 E-value=0.89 Score=36.47 Aligned_cols=53 Identities=13% Similarity=0.137 Sum_probs=38.3
Q ss_pred cccceEEEEeeCCCceeEEecCCCCCceEEeccccccC------Cc--------cccCCCCcEEEEEEeCC
Q 047168 5 TRSTGKVTWFDGAKGYGFIRPDDGGADLFVHQKSIKSD------GY--------RTLYENQSVEFDVQLEA 61 (258)
Q Consensus 5 ~~~~G~vk~f~~~kGfGFI~~~~~~~dvF~H~s~l~~~------~~--------~~l~~G~~V~F~v~~~~ 61 (258)
+.+.|+|+.... ||+...... .|.|+|+|.|... .. +.++.||.|++.+..-+
T Consensus 85 ev~~G~V~~v~~---fG~FV~l~~-~dglvhis~l~~~~~~d~~~~~~~~~~~~~~~~~Gd~V~vkV~~vd 151 (171)
T 1y14_B 85 EVVDGTVVSCSQ---HGFEVQVGP-MKVFVTKHLMPQDLTFNAGSNPPSYQSSEDVITIKSRIRVKIEGCI 151 (171)
T ss_dssp CEEEEEEEEEET---TEEEEEETT-EEEEEEGGGSCTTCEECC-----CEECSSCEECTTCEEEEEEEEEE
T ss_pred CEEEEEEEEEec---CEEEEEecC-eEEEEEHHHCCCCceECcccCceEEeccceEECCCCEEEEEEEEEE
Confidence 568899999863 776654444 8999999998422 00 34788999999887643
No 62
>2khj_A 30S ribosomal protein S1; OB fold, acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=86.54 E-value=1.4 Score=32.54 Aligned_cols=54 Identities=24% Similarity=0.201 Sum_probs=39.1
Q ss_pred ccccceEEEEeeCCCcee-EEecCCCCCceEEeccccccCC----ccccCCCCcEEEEEEeCC
Q 047168 4 LTRSTGKVTWFDGAKGYG-FIRPDDGGADLFVHQKSIKSDG----YRTLYENQSVEFDVQLEA 61 (258)
Q Consensus 4 ~~~~~G~vk~f~~~kGfG-FI~~~~~~~dvF~H~s~l~~~~----~~~l~~G~~V~F~v~~~~ 61 (258)
.+.+.|+|+...+ || ||..++ +.+-|+|++.|...- ...+.+||.|...|..-+
T Consensus 32 G~iv~G~V~~v~~---~G~fV~l~~-~~~Gll~~sel~~~~~~~~~~~~~vGd~V~v~V~~vd 90 (109)
T 2khj_A 32 GAIVTGKVTAVDA---KGATVELAD-GVEGYLRASEASRDRVEDATLVLSVGDEVEAKFTGVD 90 (109)
T ss_dssp SSEEEEEEEEECS---SCEEEECST-TCBCCBCTTCCCSSSSSSGGGSCCTTCEEEEEEEEEE
T ss_pred CCEEEEEEEEEEC---CeEEEEECC-CCEEEEEHHHcCcccccChhhccCCCCEEEEEEEEEE
Confidence 3568999999953 45 455444 589999999996432 235889999998887753
No 63
>3go5_A Multidomain protein with S1 RNA-binding domains; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.40A {Streptococcus pneumoniae}
Probab=85.55 E-value=1.6 Score=38.20 Aligned_cols=56 Identities=9% Similarity=-0.015 Sum_probs=43.3
Q ss_pred ccccceEEEEeeCCCceeEEecCCCCCceEEeccccccCCccccCCCCcEEEEEEeCCCccceeec
Q 047168 4 LTRSTGKVTWFDGAKGYGFIRPDDGGADLFVHQKSIKSDGYRTLYENQSVEFDVQLEADGKYQALD 69 (258)
Q Consensus 4 ~~~~~G~vk~f~~~kGfGFI~~~~~~~dvF~H~s~l~~~~~~~l~~G~~V~F~v~~~~~G~~~A~~ 69 (258)
...++|+|+... -||++...+ +.++|+|.+.+.. .+||.|++.+..+.++++.|+.
T Consensus 7 G~~v~g~V~~~~---~~G~fv~~~-g~egllp~se~~~------~vGdevev~v~~d~~~r~iat~ 62 (285)
T 3go5_A 7 ASFIVGLIIDEN---DRFYFVQKD-GQTYALAKEEGQH------TVGDTVKGFAYTDMKQKLRLTT 62 (285)
T ss_dssp TEEEEEEEEEEC---SSEEEEEET-TEEEEEEGGGCCC------CTTSEEEEEEEECTTSCEEEEC
T ss_pred CCEEEEEEEEEE---CCEEEEEcC-CeEEEEEHHHCcc------ccCCEEEEEEEECCCCCEEEec
Confidence 356889999885 366555444 6899999999942 8999999998888888777754
No 64
>1kl9_A Eukaryotic translation initiation factor 2 subuni; OB fold, helical domain; 1.90A {Homo sapiens} SCOP: a.60.14.1 b.40.4.5
Probab=85.11 E-value=1.8 Score=35.23 Aligned_cols=54 Identities=6% Similarity=-0.070 Sum_probs=36.9
Q ss_pred ccccceEEEEeeCCCcee-EEecC-CCCCceEEeccccccCC----ccccCCCCcEEEEEEeC
Q 047168 4 LTRSTGKVTWFDGAKGYG-FIRPD-DGGADLFVHQKSIKSDG----YRTLYENQSVEFDVQLE 60 (258)
Q Consensus 4 ~~~~~G~vk~f~~~kGfG-FI~~~-~~~~dvF~H~s~l~~~~----~~~l~~G~~V~F~v~~~ 60 (258)
.+.+.|+|+... -|| ||..+ ..+.+=|+|+|.|...- ...+++||.|...|..-
T Consensus 16 G~iv~G~V~~I~---~fGaFV~L~e~~g~eGLvhiSels~~~v~~~~~~~~vGd~V~VkVl~v 75 (182)
T 1kl9_A 16 EDVVMVNVRSIA---EMGAYVSLLEYNNIEGMILLSELSRRRIRSINKLIRIGRNECVVVIRV 75 (182)
T ss_dssp TCEEEEEEEEEC---SSEEEEEETTTTTEEEEEEGGGC------------CTTCEEEEEEEEE
T ss_pred CCEEEEEEEEEe---ccEEEEEEccCCCcEEEEEHHHCCCcccCCHHHhcCCCCEEEEEEEEE
Confidence 367899999984 577 66664 34689999999996432 23578999999888764
No 65
>2vb2_X Copper protein, cation efflux system protein CUSF; cation PI, metal-binding, metal transport, copper tolerance, transport; 1.70A {Escherichia coli} PDB: 2vb3_X
Probab=85.02 E-value=2.1 Score=30.67 Aligned_cols=61 Identities=13% Similarity=0.082 Sum_probs=39.4
Q ss_pred ccceEEEEeeCCCceeEEecCCCC--------CceEEeccccccCCccccCCCCcEEEEEEeCCCccceeeccc
Q 047168 6 RSTGKVTWFDGAKGYGFIRPDDGG--------ADLFVHQKSIKSDGYRTLYENQSVEFDVQLEADGKYQALDVT 71 (258)
Q Consensus 6 ~~~G~vk~f~~~kGfGFI~~~~~~--------~dvF~H~s~l~~~~~~~l~~G~~V~F~v~~~~~G~~~A~~V~ 71 (258)
..+|+|+.++...+- |+...+. .-.-|.+. ....+..|++|+.|.|+++..+.+ +.-+.|+
T Consensus 17 ~~~G~V~~id~~~~~--iTi~H~pI~~l~wpaMTM~F~v~--~~~~l~~lk~Gd~V~F~~~~~~~~-~~it~i~ 85 (88)
T 2vb2_X 17 SATGVVKGIDLESKK--ITIHHDPIAAVNWPEMTMRFTIT--PQTKMSEIKTGDKVAFNFVQQGNL-SLLQDIK 85 (88)
T ss_dssp EEEEEEEEEETTTTE--EEEEECCBGGGTBCSEEEEEECC--TTCEECCCCTTCEEEEEEEEETTE-EEEEEEE
T ss_pred EEEEEEEEEcCCCCE--EEEecCCcccCCCCceEEEEEcC--ChhhhhcCCCCCEEEEEEEEeCCE-EEEEEEE
Confidence 478999999877655 5544221 11223332 222356799999999999988765 6665554
No 66
>2a19_A EIF-2- alpha, eukaryotic translation initiation factor 2 alpha; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Saccharomyces cerevisiae} PDB: 2a1a_A* 1q46_A
Probab=84.44 E-value=1.5 Score=35.48 Aligned_cols=54 Identities=6% Similarity=-0.068 Sum_probs=36.6
Q ss_pred ccccceEEEEeeCCCcee-EEecC-CCCCceEEeccccccCC----ccccCCCCcEEEEEEeC
Q 047168 4 LTRSTGKVTWFDGAKGYG-FIRPD-DGGADLFVHQKSIKSDG----YRTLYENQSVEFDVQLE 60 (258)
Q Consensus 4 ~~~~~G~vk~f~~~kGfG-FI~~~-~~~~dvF~H~s~l~~~~----~~~l~~G~~V~F~v~~~ 60 (258)
.+.+.|+|+... -|| ||..+ ..+.+-|+|+|.|...- -..+++||.|...|..-
T Consensus 16 G~iv~G~V~~i~---~fGaFV~L~e~~gveGLvhiSels~~~v~~~~~~~~vGd~V~vkVl~v 75 (175)
T 2a19_A 16 DDIVMVNVQQIA---EMGAYVKLLEYDNIEGMILLSELSRRRIRSIQKLIRVGKNDVAVVLRV 75 (175)
T ss_dssp TCEEEEEEEEEE---TTEEEEEETTTTTCEEEEECC--------CCCCCCCTTSEEEEEEEEE
T ss_pred CCEEEEEEEEEe---cceEEEEEcCCCCcEEEEEHHHcCCcccCCHHHcCCCCCEEEEEEEEE
Confidence 356899999883 477 66664 25689999999996432 24588999999988764
No 67
>2qcp_X Cation efflux system protein CUSF; silver-binding, copper-binding, beta barrel, OB-fold, metall metal resistance, metal-binding; 1.00A {Escherichia coli str} PDB: 1zeq_X 3e6z_X
Probab=84.35 E-value=2.4 Score=29.73 Aligned_cols=61 Identities=13% Similarity=0.082 Sum_probs=39.4
Q ss_pred ccceEEEEeeCCCceeEEecCCCC--------CceEEeccccccCCccccCCCCcEEEEEEeCCCccceeeccc
Q 047168 6 RSTGKVTWFDGAKGYGFIRPDDGG--------ADLFVHQKSIKSDGYRTLYENQSVEFDVQLEADGKYQALDVT 71 (258)
Q Consensus 6 ~~~G~vk~f~~~kGfGFI~~~~~~--------~dvF~H~s~l~~~~~~~l~~G~~V~F~v~~~~~G~~~A~~V~ 71 (258)
..+|+|+.++...+- |+...+. .-.-|.+. ....+..|++|+.|.|+++..+.+ +.-+.|+
T Consensus 9 ~~~G~V~~id~~~~~--iTi~H~pI~~l~wpaMTM~F~v~--~~~~l~~lk~Gd~V~F~~~~~~~~-~~it~i~ 77 (80)
T 2qcp_X 9 SATGVVKGIDLESKK--ITIHHDPIAAVNWPEMTMRFTIT--PQTKMSEIKTGDKVAFNFVQQGNL-SLLQDIK 77 (80)
T ss_dssp EEEEEEEEEETTTTE--EEEEECCBGGGTBCSEEEEEECC--TTCEECCCCTTCEEEEEEEEETTE-EEEEEEE
T ss_pred EEEEEEEEEcCCCCE--EEEEcCCcccCCCCceEEEEEcc--ChhhhhcCCCCCEEEEEEEEeCCE-EEEEEEE
Confidence 578999999877655 5544322 12223332 222356799999999999988765 6655554
No 68
>3aev_A Translation initiation factor 2 subunit alpha; proteins-rRNA complex, 16S rRNA, RNA-binding; 2.80A {Pyrococcus horikoshii} PDB: 1yz6_A
Probab=82.15 E-value=3 Score=36.21 Aligned_cols=55 Identities=25% Similarity=0.289 Sum_probs=41.3
Q ss_pred ccccceEEEEeeCCCcee-EEecCC-CCCceEEeccccccCCc----cccCCCCcEEEEEEeCC
Q 047168 4 LTRSTGKVTWFDGAKGYG-FIRPDD-GGADLFVHQKSIKSDGY----RTLYENQSVEFDVQLEA 61 (258)
Q Consensus 4 ~~~~~G~vk~f~~~kGfG-FI~~~~-~~~dvF~H~s~l~~~~~----~~l~~G~~V~F~v~~~~ 61 (258)
.+.+.|+|+...+ || ||..++ .+.+-|+|+|.|...-+ ..+++||.|...|..-+
T Consensus 12 Gdiv~G~V~~I~~---fGaFV~L~e~~gieGlIhiSels~~~v~~~~~~~kvGd~V~vkVi~vD 72 (275)
T 3aev_A 12 GEFVVATVKRIHN---YGAFLELDEYPGKEAFMHISEVASTWVRNIRDYLKEGQKVVAKVIRVD 72 (275)
T ss_dssp TCEEEEEEEEEET---TEEEEEETTSTTCEEEEEGGGSCSSCCSCGGGTCCTTCEEEEEEEEEE
T ss_pred CCEEEEEEEEEEC---cEEEEEECCCCCeEEEEEHHHcCcccccCHHhccCCCCEEEEEEEEEE
Confidence 3578999999953 56 666664 46899999999964322 35889999999887743
No 69
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=80.97 E-value=0.8 Score=42.22 Aligned_cols=52 Identities=21% Similarity=0.496 Sum_probs=40.7
Q ss_pred cceEEEEeeCCCceeEEecC-----CCCCceEEeccccccCCccccCCCCcEEEEEEeCCCc
Q 047168 7 STGKVTWFDGAKGYGFIRPD-----DGGADLFVHQKSIKSDGYRTLYENQSVEFDVQLEADG 63 (258)
Q Consensus 7 ~~G~vk~f~~~kGfGFI~~~-----~~~~dvF~H~s~l~~~~~~~l~~G~~V~F~v~~~~~G 63 (258)
..|++--. ..||||+.+. .+.+||||-.+.|+..+ |+.||.|+=.+.....+
T Consensus 54 ~~g~le~~--~~g~gflr~~~~~~~~~~~d~yvs~~~ir~~~---lr~gd~v~g~~r~~~~~ 110 (422)
T 3ice_A 54 GDGVLEIL--QDGFGFLRSADSSYLAGPDDIYVSPSQIRRFN---LRTGDTISGKIRPPKEG 110 (422)
T ss_dssp EEEEEEEC--TTSCEEEECGGGTTCCCTTCEEBCHHHHHHHT---CCTTCEEEEEEECCCSS
T ss_pred EEEEEEEc--CCCceEeeCCCcCCCCCCCCeeeCHHHHHhcC---CCCCCEEEEEEeCCCcc
Confidence 45666544 5799999874 36799999999998874 89999999888776544
No 70
>1luz_A Protein K3, protein K2; stranded anti-parallel beta barrel, viral protein; 1.80A {Vaccinia virus} SCOP: b.40.4.5
Probab=80.95 E-value=1.1 Score=31.95 Aligned_cols=53 Identities=19% Similarity=0.214 Sum_probs=38.4
Q ss_pred ccccceEEEEeeCCCcee-EEecCC-CCCceEEecc-ccccCCc----cccCCCCcEEEEEEeCC
Q 047168 4 LTRSTGKVTWFDGAKGYG-FIRPDD-GGADLFVHQK-SIKSDGY----RTLYENQSVEFDVQLEA 61 (258)
Q Consensus 4 ~~~~~G~vk~f~~~kGfG-FI~~~~-~~~dvF~H~s-~l~~~~~----~~l~~G~~V~F~v~~~~ 61 (258)
.+.+.|+|+ .. .|| ||..++ ++.+-|+|+| .|...-+ ..+ .||.|+..+..-+
T Consensus 12 G~~~~G~V~-v~---~fG~FVel~~~~~~eGLvhis~el~~~~~~~~~~~~-~Gd~V~VkV~~vd 71 (88)
T 1luz_A 12 GDVIKGRVY-EK---DYALYIYLFDYPHFEAILAESVKMHMDRYVEYRDKL-VGKTVKVKVIRVD 71 (88)
T ss_dssp TCEEEEEEE-EE---TTEEEEEETTCTTSEEEEGGGSSCCHHHHHHHHHHH-TTCEEEEEEEEEE
T ss_pred CCEEEEEEE-EE---ccEEEEEECCCCCeEEEEEeeHHhCcccccCHhHEe-CCCEEEEEEEEEE
Confidence 356899999 63 466 777765 3689999999 9854321 235 8999999887743
No 71
>1wi5_A RRP5 protein homolog; S1 domain, OB-fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=80.00 E-value=6.5 Score=29.22 Aligned_cols=56 Identities=16% Similarity=0.098 Sum_probs=35.8
Q ss_pred ccccceEEEEeeCCCcee-EEecCCCCCceEEecccccc-----CCccccCCCCcEEEEEEeCCC
Q 047168 4 LTRSTGKVTWFDGAKGYG-FIRPDDGGADLFVHQKSIKS-----DGYRTLYENQSVEFDVQLEAD 62 (258)
Q Consensus 4 ~~~~~G~vk~f~~~kGfG-FI~~~~~~~dvF~H~s~l~~-----~~~~~l~~G~~V~F~v~~~~~ 62 (258)
.+.+.|+|+.. .-|| ||.......+.|+|.+.+.. ..-..+++||.|...|..-+.
T Consensus 22 G~i~~G~V~~v---~~fG~fV~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Gd~V~vkV~~vd~ 83 (119)
T 1wi5_A 22 GMLLTGTVSSL---EDHGYLVDIGVDGTRAFLPLLKAQEYIRQKNKGAKLKVGQYLNCIVEKVKG 83 (119)
T ss_dssp TCEEEEEEEEE---CSSEEEEECCCSSCEEEEEHHHHHHHHHHHSSSCCCCTTCEEEEEEEECCT
T ss_pred CCEEEEEEEEE---eCceEEEEECCCCeEEEEEEecccccccccCccCEeCCCCEEEEEEEEEeC
Confidence 45789999998 3577 55554234555555444311 112468999999999887543
No 72
>2c35_B Human RPB7, DNA-directed RNA polymerase II 19 kDa polypeptide; transcription, nucleotidyltransferase; 2.70A {Homo sapiens} SCOP: b.40.4.5 d.230.1.1
Probab=79.70 E-value=2.2 Score=34.03 Aligned_cols=53 Identities=13% Similarity=0.166 Sum_probs=36.5
Q ss_pred cccceEEEEeeCCCceeEEecCCCCCceEEeccccccC-C---------------ccccCCCCcEEEEEEeCC
Q 047168 5 TRSTGKVTWFDGAKGYGFIRPDDGGADLFVHQKSIKSD-G---------------YRTLYENQSVEFDVQLEA 61 (258)
Q Consensus 5 ~~~~G~vk~f~~~kGfGFI~~~~~~~dvF~H~s~l~~~-~---------------~~~l~~G~~V~F~v~~~~ 61 (258)
+.+.|+|+... -||+...... -+.|||+|.|... - -..++.||.|++.|..-+
T Consensus 83 ev~~G~V~~v~---~fG~fV~l~~-~~glvhis~l~~~~~~d~~~~~~~~~~~~~~~~~~~Gd~V~vkV~~vd 151 (172)
T 2c35_B 83 EVVDAVVTQVN---KVGLFTEIGP-MSCFISRHSIPSEMEFDPNSNPPCYKTMDEDIVIQQDDEIRLKIVGTR 151 (172)
T ss_dssp CEEEEEEEEEE---TTEEEEEETT-EEEEEEGGGSCTTEEEESSSSSCEEEETTSCSEEETTCEEEEEEEEEE
T ss_pred CEEEEEEEEEe---CCEEEEEECC-EEEEEEHHHCCCCcEECCCCCccEEEeCCCCEEECCCCEEEEEEEEEE
Confidence 56889999886 3666554444 4599999988421 0 114778999998887643
No 73
>2bx2_L Ribonuclease E, RNAse E; RNA-binding, RNA turnover, RNA processing, hydrolase, endonu nuclease; 2.85A {Escherichia coli} PDB: 2c0b_L 2c4r_L 2vmk_A 2vrt_A 1slj_A 1smx_A 1sn8_A
Probab=78.77 E-value=4.7 Score=38.17 Aligned_cols=69 Identities=20% Similarity=0.218 Sum_probs=50.7
Q ss_pred cccceEEEEeeCCCceeEEecCCCCCceEEeccccccCC------------c-cccCCCCcEEEEEEeCC---Cccceee
Q 047168 5 TRSTGKVTWFDGAKGYGFIRPDDGGADLFVHQKSIKSDG------------Y-RTLYENQSVEFDVQLEA---DGKYQAL 68 (258)
Q Consensus 5 ~~~~G~vk~f~~~kGfGFI~~~~~~~dvF~H~s~l~~~~------------~-~~l~~G~~V~F~v~~~~---~G~~~A~ 68 (258)
..+.|+|+...+...--||.... +.+-|+|+++|...- . ..|++|+.|...|...+ ||....+
T Consensus 47 nIY~GkV~rv~p~~~aAFVdiG~-gk~gfLhisei~~~~~~~~~~~~~~~~i~d~lk~Gq~VlVQV~Ke~~g~KGa~lTt 125 (517)
T 2bx2_L 47 NIYKGKITRIEPSLEAAFVDYGA-ERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTT 125 (517)
T ss_dssp CEEEEEEEEEETTTTEEEEESSS-SSCEEEEGGGSCGGGCC-------CCCGGGTCCTTCEEEEEEEECCCTTCCCEEES
T ss_pred CEEEEEEEEeccCCceEEEEeCC-CcEEEEEHHHcChhhhccccccccccchhhhccCCCEEEEEEEeeccccCCceEEe
Confidence 46899999999888899999776 489999999985321 1 23889999999999965 4422233
Q ss_pred ccccCC
Q 047168 69 DVTAPG 74 (258)
Q Consensus 69 ~V~~~~ 74 (258)
+|++++
T Consensus 126 ~isl~G 131 (517)
T 2bx2_L 126 FISLAG 131 (517)
T ss_dssp SCCEEC
T ss_pred eEEecc
Confidence 455444
No 74
>3h0g_G DNA-directed RNA polymerase II subunit RPB7; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=78.65 E-value=1.7 Score=34.85 Aligned_cols=52 Identities=15% Similarity=0.227 Sum_probs=37.0
Q ss_pred cccceEEEEeeCCCceeEEecCCCCCceEEeccccccCC-c-------------cccCCCCcEEEEEEeC
Q 047168 5 TRSTGKVTWFDGAKGYGFIRPDDGGADLFVHQKSIKSDG-Y-------------RTLYENQSVEFDVQLE 60 (258)
Q Consensus 5 ~~~~G~vk~f~~~kGfGFI~~~~~~~dvF~H~s~l~~~~-~-------------~~l~~G~~V~F~v~~~ 60 (258)
+.+.|+|+.... |||...... -+.|+|++.|...- | ..++.||.|++.|..-
T Consensus 86 ev~~G~V~~v~~---fG~FV~l~~-~~glVh~s~l~~~~~~d~~~~~~~~~~~~~~~~~Gd~VrvkV~~v 151 (172)
T 3h0g_G 86 EVVDAIVTTVNK---MGFFANIGP-LNVFVSSHLVPPDMKFDPTANPPNYSGEDQVIEKGSNVRLKIVGT 151 (172)
T ss_dssp CEEECCCCEEET---TEEECCBTT-BCCEEEGGGSCTTCCCBSSSSSCBEESSSCEECSSCCEEEEEEEE
T ss_pred CEEEEEEEEEEc---ceEEEEeCC-eEEEEEHHHCCCccccCcccccceEecCCcEECCCCEEEEEEEEE
Confidence 467788888763 787655544 56999999994220 1 3578999999988764
No 75
>2hqh_E Restin; beta/BETA structure, zinc finger motif, structural protein, binding; 1.80A {Homo sapiens}
Probab=76.55 E-value=0.7 Score=25.40 Aligned_cols=17 Identities=35% Similarity=0.757 Sum_probs=13.0
Q ss_pred ccccCCCCCccCCCCCC
Q 047168 215 RCYNCGKSGHLARDCGA 231 (258)
Q Consensus 215 ~C~~Cg~~GH~~~~Cp~ 231 (258)
+|-+|...||.+.+|++
T Consensus 5 YCe~CE~FGH~t~~C~d 21 (26)
T 2hqh_E 5 YCEICEMFGHWATNCND 21 (26)
T ss_dssp EETTTTEESSCGGGCCT
T ss_pred cchHHHHhCcccccCCc
Confidence 67778888888877765
No 76
>1go3_E DNA-directed RNA polymerase subunit E; transferase, transferase, transcription; 1.75A {Methanococcus jannaschii} SCOP: b.40.4.5 d.230.1.1
Probab=76.09 E-value=5.9 Score=31.89 Aligned_cols=53 Identities=17% Similarity=0.060 Sum_probs=38.1
Q ss_pred cccceEEEEeeCCCceeEEecCCCCCceEEeccccccCC---------------ccccCCCCcEEEEEEeCC
Q 047168 5 TRSTGKVTWFDGAKGYGFIRPDDGGADLFVHQKSIKSDG---------------YRTLYENQSVEFDVQLEA 61 (258)
Q Consensus 5 ~~~~G~vk~f~~~kGfGFI~~~~~~~dvF~H~s~l~~~~---------------~~~l~~G~~V~F~v~~~~ 61 (258)
+.+.|+|+... -||+...... .|-|+|.|.|.... -..+++||.|.+.+..-+
T Consensus 83 ev~~G~V~~v~---~~G~fV~l~~-~eglvhis~l~~~~~~~d~~~~~~~~~~~~~~~~~Gd~V~vkV~~vd 150 (187)
T 1go3_E 83 ELIEGEVVDVV---EFGSFVRLGP-LDGLIHVSQIMDDYVSYDPKREAIIGKETGKVLEIGDYVRARIVAIS 150 (187)
T ss_dssp CEEEEEEEEEE---TTEEEEECSS-SEEEEEGGGSCSSCEEECCC--CEEETTTCCEECTTCEEEEEEEEEE
T ss_pred CEEEEEEEEEe---CcEEEEEEcC-ccEEEEhHHhCCCcceECCccceEEecCCCeEEcCCCEEEEEEEEEE
Confidence 56889999986 3554444433 89999999986432 235889999999887643
No 77
>4ayb_E DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2y0s_E 4b1o_E 4b1p_T 2waq_E 2wb1_E 2pmz_E 3hkz_E
Probab=76.04 E-value=6.2 Score=31.59 Aligned_cols=54 Identities=24% Similarity=0.247 Sum_probs=39.9
Q ss_pred ccccceEEEEeeCCCceeEEecCCCCCceEEeccccccCCc---------------cccCCCCcEEEEEEeCC
Q 047168 4 LTRSTGKVTWFDGAKGYGFIRPDDGGADLFVHQKSIKSDGY---------------RTLYENQSVEFDVQLEA 61 (258)
Q Consensus 4 ~~~~~G~vk~f~~~kGfGFI~~~~~~~dvF~H~s~l~~~~~---------------~~l~~G~~V~F~v~~~~ 61 (258)
.+.+.|+|+..+ -||+-.... .-|-|+|.+.|..+.+ ..++.|+.|++.|..-+
T Consensus 82 Gev~~G~V~~v~---~~G~fv~l~-~~~glvh~s~l~~d~~~~d~~~~~~~g~~~~~~~~~Gd~VrvkV~~v~ 150 (180)
T 4ayb_E 82 QEVVEGEVLQVD---NYGVFVNLG-PMDGLVHISQITDDTLKYDNVRGIIFGEKSKKVIQKGDKVRARVISVA 150 (180)
T ss_dssp TCEEEEEEEEEE---TTEEEEECS-SSEEEEEGGGSCSSCEEECSSSCCEEETTTCCCCCTTCEEEEEEEEEC
T ss_pred CCEEEEEEeeec---cceEEEEEC-CccceEEeeecCCCccccchhcceEEEeccCeEECCCCEEEEEEEEEe
Confidence 356789999986 355555444 4799999999976543 25899999999987643
No 78
>1q8k_A Eukaryotic translation initiation factor 2 subunit 1; NMR {Homo sapiens} SCOP: a.60.14.1 b.40.4.5 d.58.51.1
Probab=73.90 E-value=6.4 Score=34.69 Aligned_cols=55 Identities=7% Similarity=0.038 Sum_probs=41.3
Q ss_pred ccccceEEEEeeCCCcee-EEecCC-CCCceEEeccccccCC----ccccCCCCcEEEEEEeCC
Q 047168 4 LTRSTGKVTWFDGAKGYG-FIRPDD-GGADLFVHQKSIKSDG----YRTLYENQSVEFDVQLEA 61 (258)
Q Consensus 4 ~~~~~G~vk~f~~~kGfG-FI~~~~-~~~dvF~H~s~l~~~~----~~~l~~G~~V~F~v~~~~ 61 (258)
...+.|+|+...+ || ||..++ .+.+-|+|+|.|...- -..+++|+.|...|..-+
T Consensus 14 G~iv~G~V~~I~~---fGaFV~L~ey~gveGLvhiSels~~~i~~~~~~~kvGd~V~VkVl~vD 74 (308)
T 1q8k_A 14 EDVVMVNVRSIQE---MGAYVSLLEYNNIEGMIHLSELSRRRIRSINKLIRIGRNECVKVIRVD 74 (308)
T ss_dssp CCEEEEEEEEEET---TEEEEESCTTTSCCEEECGGGTSCSSCSCCTTTCSSSCEEEEEEEEEE
T ss_pred CCEEEEEEEEEeC---cEEEEEECCCCCeEEEEEhHHcCcccccCHHHhcCCCCEEEEEEEEEe
Confidence 3568999999964 67 666653 5689999999996432 234789999998887753
No 79
>3cw2_C Translation initiation factor 2 subunit alpha; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2aho_B 3v11_B*
Probab=65.54 E-value=5.5 Score=34.32 Aligned_cols=55 Identities=24% Similarity=0.255 Sum_probs=41.4
Q ss_pred ccccceEEEEeeCCCcee-EEecCC-CCCceEEeccccccCCc----cccCCCCcEEEEEEeCC
Q 047168 4 LTRSTGKVTWFDGAKGYG-FIRPDD-GGADLFVHQKSIKSDGY----RTLYENQSVEFDVQLEA 61 (258)
Q Consensus 4 ~~~~~G~vk~f~~~kGfG-FI~~~~-~~~dvF~H~s~l~~~~~----~~l~~G~~V~F~v~~~~ 61 (258)
...+.|+|+...+ || ||..++ .+.+-|+|+|.|...-+ ..+.+||.|...|..-+
T Consensus 12 G~iv~G~V~~I~~---~GaFV~l~e~~~~~GlihiSels~~~v~~~~~~~~vGd~V~VkVi~vd 72 (266)
T 3cw2_C 12 GEILIATVKQVFD---YGSYVSLDEYGGLQAFLPWSEVSSKWVKNIRDVLKENRKVIVKVIRVD 72 (266)
T ss_dssp TCEEEEEEEECCS---SSBEEEETTTTSEECBBCGGGSSCSSCCCHHHHSCTTCEEEEEECCCC
T ss_pred CCEEEEEEEEEec---cEEEEEEcCCCCeEEEEEhHHcCcccccCHHHhCcCCCEEEEEEEEEe
Confidence 4578999999843 66 666653 56899999999964322 34889999999887754
No 80
>2vnu_D Exosome complex exonuclease RRP44; hydrolase-RNA complex, RNA degradation, RNA-binding, RNA Pro; HET: 1PE; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16
Probab=59.51 E-value=8.2 Score=38.24 Aligned_cols=49 Identities=8% Similarity=0.184 Sum_probs=38.4
Q ss_pred cccceEEEEeeCCCce--eEEecCCCCCceEEec-cccccCCccccCCCCcEEEEEEeC
Q 047168 5 TRSTGKVTWFDGAKGY--GFIRPDDGGADLFVHQ-KSIKSDGYRTLYENQSVEFDVQLE 60 (258)
Q Consensus 5 ~~~~G~vk~f~~~kGf--GFI~~~~~~~dvF~H~-s~l~~~~~~~l~~G~~V~F~v~~~ 60 (258)
..++|++.- ..++| ||+++++..+|||+.- .++.. .-.||.|..++...
T Consensus 31 ~l~~G~l~~--~~~~~~~gfv~~~~~~~di~I~~~~~~n~-----A~~GD~V~V~i~~~ 82 (760)
T 2vnu_D 31 VLYQGNIQI--SEYNFLEGSVSLPRFSKPVLIVGQKNLNR-----AFNGDQVIVELLPQ 82 (760)
T ss_dssp SEEEEEEEE--CSSBTTEEEECCSSSSSCEEEESHHHHTT-----CCTTCEEEEEECCG
T ss_pred CEEEEEEEE--ecCCCccEEEEcCCCCCCEEEcChhhhcc-----ccCCCEEEEEEecc
Confidence 357787775 37899 9999998789999997 66643 36899999998654
No 81
>4hti_A Receptor-type tyrosine-protein phosphatase N2; phogrin, IA-2BETA, protein-tyrosine phosphatase, transmembra protein, diabetes, autoimmunity; 1.95A {Homo sapiens} PDB: 4htj_A
Probab=54.73 E-value=7.1 Score=28.59 Aligned_cols=21 Identities=24% Similarity=0.343 Sum_probs=16.4
Q ss_pred CCcEEEEEEeCCCccceeeccc
Q 047168 50 NQSVEFDVQLEADGKYQALDVT 71 (258)
Q Consensus 50 G~~V~F~v~~~~~G~~~A~~V~ 71 (258)
|-.|+|.|...+++ +.|.+|-
T Consensus 51 g~aVTFrV~~N~~n-~taadVA 71 (99)
T 4hti_A 51 GPAVTFKVSANVQN-VTTEDVE 71 (99)
T ss_dssp TTEEEEEECCCTTC-CCHHHHH
T ss_pred CceEEEEeccCCCC-CCHHHHH
Confidence 45799999999987 6776653
No 82
>1j6q_A Cytochrome C maturation protein E; all-beta protein, heme delivery,cytochrome C maturation, OB- (oligonucleotide binding)fold; NMR {Shewanella putrefaciens} SCOP: b.40.9.1 PDB: 1lm0_A
Probab=53.35 E-value=31 Score=26.60 Aligned_cols=63 Identities=24% Similarity=0.251 Sum_probs=47.9
Q ss_pred ceEEEEeeCCCceeEEecCCCCCceEEeccccccCCccccCCCCcEEEEEEeCCCccceeeccccC
Q 047168 8 TGKVTWFDGAKGYGFIRPDDGGADLFVHQKSIKSDGYRTLYENQSVEFDVQLEADGKYQALDVTAP 73 (258)
Q Consensus 8 ~G~vk~f~~~kGfGFI~~~~~~~dvF~H~s~l~~~~~~~l~~G~~V~F~v~~~~~G~~~A~~V~~~ 73 (258)
.|.|+|-.....+=|...|+....|-|...-+..+- .++|+.|.-+=...++|.++|.+|-.-
T Consensus 43 ~GSv~r~~~~~~v~F~vtD~~~~~v~V~Y~GilPDl---FrEGqgVVa~G~l~~~g~F~A~eVLaK 105 (136)
T 1j6q_A 43 VGSMVRDPNSLHVQFAVHDSLGGEILVTYDDLLPDL---FREGQGIVAQGVLGEDGKLAATEVLAK 105 (136)
T ss_dssp TTCCEECTTSSCEEEEEECTTCCCEEEEECSCCTTS---CCSSSEEEEEEEECSTTSEEEEEEECC
T ss_pred CCcEEecCCCCEEEEEEEcCCCCEEEEEECCCCCcc---ccCCCeEEEEEEECCCCeEEEEEEEec
Confidence 345555434567899998856789999999998775 578999987777776777899988754
No 83
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=52.51 E-value=44 Score=26.62 Aligned_cols=54 Identities=9% Similarity=-0.057 Sum_probs=37.7
Q ss_pred ccccceEEEEeeCCCceeEEecCC---------CCCceEEeccccccCC----ccccCCCCcEEEEEEe
Q 047168 4 LTRSTGKVTWFDGAKGYGFIRPDD---------GGADLFVHQKSIKSDG----YRTLYENQSVEFDVQL 59 (258)
Q Consensus 4 ~~~~~G~vk~f~~~kGfGFI~~~~---------~~~dvF~H~s~l~~~~----~~~l~~G~~V~F~v~~ 59 (258)
.+.+.|+|+...+ ++ -||.... ..-+=++|+++|.... ...+++||.|.-.|..
T Consensus 58 GdiV~G~V~~V~~-~g-a~V~I~~v~~~~~~~~~~~~Gll~isei~~~~~~~~~~~~~~GD~V~akVi~ 124 (179)
T 3m7n_A 58 GDVVLGRVVDLRN-SI-ALIEVSSKKGENRGPSNRGIGILHVSNVDEGYVKEISEAVGYLDILKARVIG 124 (179)
T ss_dssp TCEEEEEEEEECS-SE-EEEEEEEETTCCSCCTTCEEEEEEGGGTTSSCCSSGGGTCCTTCEEEEEEEE
T ss_pred CCEEEEEEEEEeC-Cc-EEEEEccccCcccccccCeeEEEEHHHcCcchhhCHhhcCCCCCEEEEEEEC
Confidence 3567899998853 22 2444332 1578899999997542 3568999999998887
No 84
>2yuc_A TNF receptor-associated factor 4; ZF-TRAF, cysteine-rich domain associated with ring and TRAF domains protein 1, malignant 62; NMR {Homo sapiens}
Probab=52.38 E-value=30 Score=22.99 Aligned_cols=9 Identities=22% Similarity=0.626 Sum_probs=5.5
Q ss_pred CCCCCCCCCC
Q 047168 167 EHFARDCPRQ 176 (258)
Q Consensus 167 GH~~~~Cp~~ 176 (258)
.|. ..|+..
T Consensus 7 ~H~-~~C~~~ 15 (76)
T 2yuc_A 7 GHL-NTCSFN 15 (76)
T ss_dssp CCC-CCCCCS
T ss_pred HHH-HHCCCc
Confidence 466 667655
No 85
>2kct_A Cytochrome C-type biogenesis protein CCME; solution structure, heme chaperone, cytochrome C biogenesis, OB-fold domain, NESG, PSI-2; NMR {Desulfovibrio vulgaris str}
Probab=52.28 E-value=27 Score=25.11 Aligned_cols=63 Identities=21% Similarity=0.289 Sum_probs=46.9
Q ss_pred cceEEEEeeCCCceeEEecCC--CCCceEEeccccccCCccccCCCCcEEEEEEeCC-Cccceeecccc
Q 047168 7 STGKVTWFDGAKGYGFIRPDD--GGADLFVHQKSIKSDGYRTLYENQSVEFDVQLEA-DGKYQALDVTA 72 (258)
Q Consensus 7 ~~G~vk~f~~~kGfGFI~~~~--~~~dvF~H~s~l~~~~~~~l~~G~~V~F~v~~~~-~G~~~A~~V~~ 72 (258)
..|.|+|-.....+=|+..|. ....|-|...-+..+- +++|+.|.-+=...+ +|.++|.+|-.
T Consensus 18 ~~GSv~r~~~~~~v~F~vtD~~~~~~~v~V~Y~GilPDl---FrEGqgVV~~G~l~~~~g~F~A~evLa 83 (94)
T 2kct_A 18 AADGLTMLDGAPGVRFRLEDKDNTSKTVWVLYKGAVPDT---FKPGVEVIIEGGLAPGEDTFKARTLMT 83 (94)
T ss_dssp CSTTCEECTTSSEEEEEEECSSCTTCEEEEEEESCCCTT---CCTTCEEEEEEEECTTCSEEEEEEEEE
T ss_pred eCCeEEecCCCCEEEEEEEcCCCCCcEEEEEECCCCCcc---ccCCCeEEEEEEEeCCCCEEEEeEEEE
Confidence 345566654466788988775 3688999999998775 578999987777766 67788988754
No 86
>2id0_A Exoribonuclease 2; RNAse, exonuclease, hydrolyase, mRNA decay, RNR family, hydrolase; 2.35A {Escherichia coli} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16 PDB: 2ix0_A* 2ix1_A
Probab=48.07 E-value=31 Score=33.30 Aligned_cols=53 Identities=17% Similarity=0.203 Sum_probs=37.9
Q ss_pred ccceEEEEeeCCCcee-EEecCCCCCceEEecccccc--C--------------CccccCCCCcEEEEEEeCC
Q 047168 6 RSTGKVTWFDGAKGYG-FIRPDDGGADLFVHQKSIKS--D--------------GYRTLYENQSVEFDVQLEA 61 (258)
Q Consensus 6 ~~~G~vk~f~~~kGfG-FI~~~~~~~dvF~H~s~l~~--~--------------~~~~l~~G~~V~F~v~~~~ 61 (258)
.+.|+|+.+. .|| ||..++.+-+.|||+|.|.. . .-..++.||.|+..|..-+
T Consensus 563 ~f~g~V~~V~---~~G~fV~L~~~gieGlVhis~l~~~~d~~~~d~~~~~l~~~~~~~~~lGD~V~VkV~~vd 632 (644)
T 2id0_A 563 RFAAEIVDIS---RGGMRVRLVDNGAIAFIPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEVR 632 (644)
T ss_dssp CEEEEEEEEE---TTEEEEEETTTCCEEEEEGGGTCSCGGGEEEETTTTEEEETTEEEEETTCEEEEEEEEEE
T ss_pred eEEEEEEEEe---CCceEEEEcCCcEEEEEEchhccCcCceeEEcccccEEEecCCCEeCCCCEEEEEEEEEe
Confidence 6789999885 355 46665667899999999853 1 1134788999888877643
No 87
>2wp8_J Exosome complex exonuclease DIS3; nucleus, hydrolase, RNA-binding, exonucle binding, mitochondrion, rRNA processing; 3.00A {Saccharomyces cerevisiae}
Probab=46.20 E-value=15 Score=37.53 Aligned_cols=49 Identities=8% Similarity=0.184 Sum_probs=38.3
Q ss_pred cccceEEEEeeCCCce--eEEecCCCCCceEEec-cccccCCccccCCCCcEEEEEEeC
Q 047168 5 TRSTGKVTWFDGAKGY--GFIRPDDGGADLFVHQ-KSIKSDGYRTLYENQSVEFDVQLE 60 (258)
Q Consensus 5 ~~~~G~vk~f~~~kGf--GFI~~~~~~~dvF~H~-s~l~~~~~~~l~~G~~V~F~v~~~ 60 (258)
..++|++.- ..++| ||+..++..+|||+.- .++.. .-.||.|..++...
T Consensus 248 ~l~~G~l~v--~~~~~~egfV~~~~~~~DI~I~~~~~~n~-----A~~GD~V~V~i~~~ 299 (977)
T 2wp8_J 248 VLYQGNIQI--SEYNFLEGSVSLPRFSKPVLIVGQKNLNR-----AFNGDQVIVELLPQ 299 (977)
T ss_dssp SSEEEEEEE--CSSBTTEEEECCTTCSSCEEEESHHHHTT-----CCTTCEEEEEECCG
T ss_pred CEEEEEEEE--ccCCCccEEEEcCCCCCCEEEcChHHhhh-----CcCCCEEEEEEecc
Confidence 457787765 47899 9999998889999997 56643 36899999998654
No 88
>2je6_I RRP4, exosome complex RNA-binding protein 1; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1 PDB: 2jea_I* 2jeb_I* 3l7z_C
Probab=45.54 E-value=38 Score=28.70 Aligned_cols=55 Identities=9% Similarity=-0.080 Sum_probs=38.9
Q ss_pred cccceEEEEeeCCCceeEEecCCCCCceEEeccccccCC-------ccccCCCCcEEEEEEeCCC
Q 047168 5 TRSTGKVTWFDGAKGYGFIRPDDGGADLFVHQKSIKSDG-------YRTLYENQSVEFDVQLEAD 62 (258)
Q Consensus 5 ~~~~G~vk~f~~~kGfGFI~~~~~~~dvF~H~s~l~~~~-------~~~l~~G~~V~F~v~~~~~ 62 (258)
+.+.|+|+..... .-|+... ...+-++|+++|...- ...|++||.|...|..-.+
T Consensus 76 DiV~G~V~~v~~~--ga~VdI~-~~~~GlL~isei~~~~~~~~~~~~~~l~vGD~V~arVi~v~~ 137 (251)
T 2je6_I 76 DIVIGLVEDVEIY--GWVVDIK-APYKAYLPASNLLGRSINVGEDLRRYLDVGDYVIARIENFDR 137 (251)
T ss_dssp CEEEEEEEEECSS--EEEEECS-SSSCEEEEHHHHHTSCCCTTCCCSSSCCTTCEEEEEEEEEET
T ss_pred CEEEEEEEEEeCc--eEEEEcC-CCeEEEEEHHHhcCCccccccchhhcCCCCCEEEEEEEEECC
Confidence 5678999988432 4455544 4579999999997432 1268999999988877543
No 89
>2pzo_E CAP-Gly domain-containing linker protein 1; structural protein microtubule binding, dynactin, cytoskeleton associated protein, P150glued; 2.60A {Homo sapiens} PDB: 3e2u_E
Probab=45.24 E-value=5.9 Score=24.18 Aligned_cols=17 Identities=35% Similarity=0.757 Sum_probs=12.5
Q ss_pred ccccCCCCCccCCCCCC
Q 047168 215 RCYNCGKSGHLARDCGA 231 (258)
Q Consensus 215 ~C~~Cg~~GH~~~~Cp~ 231 (258)
+|-+|...||...+|++
T Consensus 22 YCd~CEvFGH~t~~Cnd 38 (42)
T 2pzo_E 22 YCEICEMFGHWATNCND 38 (42)
T ss_dssp EETTTTEESSCGGGCCT
T ss_pred ccccccccCcccccCCc
Confidence 67777777777777764
No 90
>3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces cerevisiae}
Probab=42.30 E-value=39 Score=35.34 Aligned_cols=55 Identities=9% Similarity=-0.040 Sum_probs=40.2
Q ss_pred ccccceEEEEeeCCCceeEEecCCCCCceEEeccccccCC-----ccccCCCCcEEEEEEeCC
Q 047168 4 LTRSTGKVTWFDGAKGYGFIRPDDGGADLFVHQKSIKSDG-----YRTLYENQSVEFDVQLEA 61 (258)
Q Consensus 4 ~~~~~G~vk~f~~~kGfGFI~~~~~~~dvF~H~s~l~~~~-----~~~l~~G~~V~F~v~~~~ 61 (258)
.+.+.|+|+... -||.....+.+.|=|||+|.|...- ...+++|+.|...|..-+
T Consensus 903 G~iv~G~V~~V~---~fGaFV~L~~gveGLVHiSelsd~~~v~~p~~v~kvGd~V~vkVl~VD 962 (1219)
T 3psi_A 903 GSIIPVRVERFW---HNDIICTTNSEVECVVNAQRHAGAQLRRPANEIYEIGKTYPAKVIYID 962 (1219)
T ss_dssp TCEEEEEEEEEC---SSCEEEECTTSCEEEECTTSSSSTTSCSCSTTTSCTTCEEEEEEEEEE
T ss_pred CCEEEEEEEEEe---cceEEEEeCCCceEEEEHHHcCCCcccCCHHHcCCCCCEEEEEEEEEE
Confidence 467899999873 3664444455689999999997543 235889999998887653
No 91
>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A
Probab=40.55 E-value=60 Score=28.89 Aligned_cols=52 Identities=15% Similarity=0.045 Sum_probs=39.3
Q ss_pred ccccceEEEEeeCCCceeEEecCCCCCceEEeccccccCCccccCCCCcEEEEEEeCC
Q 047168 4 LTRSTGKVTWFDGAKGYGFIRPDDGGADLFVHQKSIKSDGYRTLYENQSVEFDVQLEA 61 (258)
Q Consensus 4 ~~~~~G~vk~f~~~kGfGFI~~~~~~~dvF~H~s~l~~~~~~~l~~G~~V~F~v~~~~ 61 (258)
...++|+|+..+ +++=||.. +..|-|+|.+.+... ..+++|++|+..+..-+
T Consensus 135 GeIV~G~V~ri~--~~~v~VDl--Gk~EgiLp~sE~ip~--E~~~vGD~Vkv~V~~V~ 186 (344)
T 1hh2_P 135 GTVTTAEVIRVM--GEWADIRI--GKLETRLPKKEWIPG--EEIKAGDLVKVYIIDVV 186 (344)
T ss_dssp TCEEEEEEEEEC--SSEEEEEE--TTEEEEEEGGGSCTT--CCCCTTCEEEEEEEEEE
T ss_pred CCEEEEEEEEEe--cCcEEEEe--CCeEEEEeHHHcCCC--cCCCCCCEEEEEEEEEE
Confidence 356899999985 44445554 468999999999754 46899999998776543
No 92
>3alr_A Nanos protein; zinc-finger, translational repression, RNA, 3'-UTR, metal BI protein; 2.10A {Danio rerio}
Probab=40.48 E-value=12 Score=27.51 Aligned_cols=18 Identities=39% Similarity=0.820 Sum_probs=10.8
Q ss_pred ccccCCCCC---ccCCCCCCC
Q 047168 215 RCYNCGKSG---HLARDCGAG 232 (258)
Q Consensus 215 ~C~~Cg~~G---H~~~~Cp~~ 232 (258)
.|-.|+..| |..+-||..
T Consensus 73 ~CpiCGATGd~AHT~kYCP~~ 93 (106)
T 3alr_A 73 KCPLCGATGAKAHTKRFCPMV 93 (106)
T ss_dssp CCTTTCCCGGGCCCGGGCTTC
T ss_pred cCCCCCCcCCcccceecCCCC
Confidence 466666666 555666653
No 93
>3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5 c.55.3.13 PDB: 3bzk_A 2oce_A
Probab=40.35 E-value=32 Score=34.24 Aligned_cols=54 Identities=20% Similarity=0.199 Sum_probs=39.3
Q ss_pred ccccceEEEEeeCCCcee-EEecCCCCCceEEeccccccCC----ccccCCCCcEEEEEEeCC
Q 047168 4 LTRSTGKVTWFDGAKGYG-FIRPDDGGADLFVHQKSIKSDG----YRTLYENQSVEFDVQLEA 61 (258)
Q Consensus 4 ~~~~~G~vk~f~~~kGfG-FI~~~~~~~dvF~H~s~l~~~~----~~~l~~G~~V~F~v~~~~ 61 (258)
.+.+.|+|+... -|| ||.. +...|-|||+|.|...- -..+++||.|...|..-+
T Consensus 655 G~iv~G~V~~V~---~fGaFV~l-~~~~eGLVhiS~Lsd~~v~d~~~~~~vGd~V~VkVi~VD 713 (785)
T 3bzc_A 655 GMVLEGVVTNVT---NFGAFVDI-GVHQDGLVHISALSEKFVKDPYEVVKAGDIVKVKVMEVD 713 (785)
T ss_dssp TCBCCCEEEEEE---TTEEEEEC-SSSSEEEEETTTSCSSCCSCHHHHCCTTCCCCCBEEEEE
T ss_pred CCEEEEEEEEEe---cCCeEEEe-CCCcEEEEEHHHcCccccCChhheeCCCCEEEEEEEEEE
Confidence 467899999984 467 5554 44579999999997531 134889999988777643
No 94
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=39.88 E-value=76 Score=21.94 Aligned_cols=38 Identities=18% Similarity=0.219 Sum_probs=31.9
Q ss_pred ccccceEEEEeeCCCceeEEecCCCCCceEEeccccccC
Q 047168 4 LTRSTGKVTWFDGAKGYGFIRPDDGGADLFVHQKSIKSD 42 (258)
Q Consensus 4 ~~~~~G~vk~f~~~kGfGFI~~~~~~~dvF~H~s~l~~~ 42 (258)
...+.|+|+..+..+..=||.-+|. .+-+++..+|...
T Consensus 40 GlfYLGTI~kV~~~~e~ClV~F~D~-S~~W~~~kdi~~~ 77 (79)
T 2m0o_A 40 GLLYLGTIKKVDSAREVCLVQFEDD-SQFLVLWKDISPA 77 (79)
T ss_dssp SCCCEEEEEEEETTTTEEEEEETTS-CEEEEETTTBCCC
T ss_pred CCEEeEEEEEeccCCCEEEEEEcCC-CeEEEEeeccccc
Confidence 3468899999999999999998886 6889998888654
No 95
>2ckz_B C25, DNA-directed RNA polymerase III 25 KD polypeptide; multiprotein complex, nucleotidyltransferase, nuclear protein, hypothetical protein; 3.2A {Saccharomyces cerevisiae}
Probab=36.65 E-value=71 Score=26.35 Aligned_cols=53 Identities=17% Similarity=0.124 Sum_probs=33.7
Q ss_pred cccceEEEEeeCCCceeEEecCCCCCceEEeccccccCCc------------------cccCCCCcEEEEEEeC
Q 047168 5 TRSTGKVTWFDGAKGYGFIRPDDGGADLFVHQKSIKSDGY------------------RTLYENQSVEFDVQLE 60 (258)
Q Consensus 5 ~~~~G~vk~f~~~kGfGFI~~~~~~~dvF~H~s~l~~~~~------------------~~l~~G~~V~F~v~~~ 60 (258)
+.+.|+|+..+ .|||....++.-|=+||.+++..+.+ ..++.|+.|+|.|..-
T Consensus 83 Ev~~G~Is~Vt---~fGifVeL~g~~eglv~~s~l~~d~~~fd~~~~~~vg~~~e~t~~~~~~Gd~VrvrV~~v 153 (218)
T 2ckz_B 83 EIVTGWISKCT---AEGIKVSLLGIFDDIFIPQNMLFEGCYYTPEESAWIWPMDEETKLYFDVNEKIRFRIERE 153 (218)
T ss_dssp CEEEEEEEEEE---TTEEEEECTTSCCCEEEETTTSCTTCEEETTTTEEEEECC--CEEEECTTCEEEEEEEEE
T ss_pred CEEEEEEEEEc---cCcEEEEccCccceEEEcHHHCCCCcEEcCcCceEEeeccccCCcEEcCCCEEEEEEEEE
Confidence 56788998885 46655544334455577777754432 2367788888877663
No 96
>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=36.44 E-value=1e+02 Score=25.45 Aligned_cols=56 Identities=7% Similarity=-0.168 Sum_probs=39.3
Q ss_pred ccccceEEEEeeCCCceeEEecCCCCCceEEeccccccCC-----ccccCCCCcEEEEEEeCCC
Q 047168 4 LTRSTGKVTWFDGAKGYGFIRPDDGGADLFVHQKSIKSDG-----YRTLYENQSVEFDVQLEAD 62 (258)
Q Consensus 4 ~~~~~G~vk~f~~~kGfGFI~~~~~~~dvF~H~s~l~~~~-----~~~l~~G~~V~F~v~~~~~ 62 (258)
.+.+.|+|...... .-|+.. +...+-++|+++|.... ...|++||.|...|..-.+
T Consensus 58 GDiV~G~V~~v~~~--~a~V~I-~~~~~g~l~isev~~~~~~~~~~~~l~~GD~V~arVi~v~~ 118 (229)
T 2ba0_A 58 GDVVIGIIREVAAN--GWAVDI-YSPYQAFLPVSENPEMKPNKKPNEVLDIGDAIIAKVLNIDP 118 (229)
T ss_dssp TCEEEEEEEEECSS--EEEEEC-SSSSCEEEEGGGCTTCCTTSCGGGTCCTTCEEEEEEEEECT
T ss_pred CCEEEEEEEEEeCC--eEEEEe-CCCeEEEEEHHHccccccccchhcccCCCCEEEEEEEEECC
Confidence 35678999988433 445554 44578999999998431 2468999999988877543
No 97
>1sr3_A APO-CCME; OB fold, beta barrel, flexible C-terminal domain, chaperone; NMR {Escherichia coli} SCOP: b.40.9.1
Probab=35.92 E-value=64 Score=24.79 Aligned_cols=62 Identities=24% Similarity=0.158 Sum_probs=46.3
Q ss_pred ceEEEEeeCCCceeEEecCCCCCceEEeccccccCCccccCCCCcEEEEEEeCCCccceeeccccC
Q 047168 8 TGKVTWFDGAKGYGFIRPDDGGADLFVHQKSIKSDGYRTLYENQSVEFDVQLEADGKYQALDVTAP 73 (258)
Q Consensus 8 ~G~vk~f~~~kGfGFI~~~~~~~dvF~H~s~l~~~~~~~l~~G~~V~F~v~~~~~G~~~A~~V~~~ 73 (258)
.|.|++-.....+=|+..|. ...|-|...-+..+- .++|+.|.-+=...++|.++|.+|-.-
T Consensus 39 ~GSv~r~~~~~~v~F~vtD~-~~~v~V~Y~GilPDl---FrEGqgVVa~G~l~~~g~F~A~eVLAK 100 (136)
T 1sr3_A 39 PGSVQRDPNSLKVTFTIYDA-EGSVDVSYEGILPDL---FREGQGVVVQGELEKGNHILAKEVLAK 100 (136)
T ss_dssp TTTCEECSSSSEEEEEEECS-SCEEEEEEESCCCTT---CCTTSEEEEEEEECSSSEEEESSCBCC
T ss_pred CCcEEEcCCCCEEEEEEEeC-CcEEEEEECCCCCcc---ccCCCeEEEEEEECCCCeEEEEEEEec
Confidence 45555544455788988775 579999999998775 478999987777776777889888654
No 98
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=35.50 E-value=98 Score=20.78 Aligned_cols=38 Identities=18% Similarity=0.261 Sum_probs=32.5
Q ss_pred cccceEEEEeeCCCceeEEecCCCCCceEEeccccccCC
Q 047168 5 TRSTGKVTWFDGAKGYGFIRPDDGGADLFVHQKSIKSDG 43 (258)
Q Consensus 5 ~~~~G~vk~f~~~kGfGFI~~~~~~~dvF~H~s~l~~~~ 43 (258)
..+.|+|+..+..++.=||.-.|. .+-+++..+|...+
T Consensus 24 lfYlGtV~kV~~~~~~ClV~FeD~-s~~wv~~kdi~~~~ 61 (68)
T 2e5p_A 24 LLYLGTIKKVDSAREVCLVQFEDD-SQFLVLWKDISPAA 61 (68)
T ss_dssp SEEEEEEEEEETTTTEEEEEETTT-EEEEEETTTEECCC
T ss_pred cEEEeEEEEEecCCcEEEEEEccC-Ceeeeeeecccccc
Confidence 468899999999999999998875 68899999987654
No 99
>1ah9_A IF1, initiation factor 1; ribosome binding, protein-RNA interaction, OB fold; NMR {Escherichia coli} SCOP: b.40.4.5
Probab=35.30 E-value=77 Score=21.06 Aligned_cols=53 Identities=11% Similarity=0.075 Sum_probs=33.8
Q ss_pred cccceEEEEeeCCCceeEEecCCCCCceEEeccccccCCccccCCCCcEEEEEEe
Q 047168 5 TRSTGKVTWFDGAKGYGFIRPDDGGADLFVHQKSIKSDGYRTLYENQSVEFDVQL 59 (258)
Q Consensus 5 ~~~~G~vk~f~~~kGfGFI~~~~~~~dvF~H~s~l~~~~~~~l~~G~~V~F~v~~ 59 (258)
.++.|+|.+--. .+|=.+..+++ ..+-.|++---......+.+||.|.|++..
T Consensus 6 ~~~~G~Vi~~lg-~~~y~V~~~~g-~~~~~~i~Gk~Rk~~i~i~vGD~V~ve~~~ 58 (71)
T 1ah9_A 6 IEMQGTVLETLP-NTMFRVELENG-HVVTAHISGKMRKNYIRILTGDKVTVELTP 58 (71)
T ss_dssp EECCEEEEEECS-SSEEEEEETTS-CEEEEEECSSGGGTTCCCCTTCEECCEECS
T ss_pred eEEEEEEEEEeC-CcEEEEEECCC-CEEEEEEcceEeccCccCCCCCEEEEEEec
Confidence 457899997732 24444444453 567777776644322346799999999764
No 100
>2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein, cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum pernix} SCOP: b.40.4.5 d.51.1.1
Probab=34.66 E-value=1.2e+02 Score=25.17 Aligned_cols=56 Identities=7% Similarity=-0.098 Sum_probs=39.6
Q ss_pred ccccceEEEEeeCCCceeEEecCCCCCceEEeccccccCC--------ccccCCCCcEEEEEEeCCC
Q 047168 4 LTRSTGKVTWFDGAKGYGFIRPDDGGADLFVHQKSIKSDG--------YRTLYENQSVEFDVQLEAD 62 (258)
Q Consensus 4 ~~~~~G~vk~f~~~kGfGFI~~~~~~~dvF~H~s~l~~~~--------~~~l~~G~~V~F~v~~~~~ 62 (258)
.+.+.|+|+..... .-|+... ...+-++|+++|.... ...|++||.|.-.|..-.+
T Consensus 67 GDiV~G~V~~v~~~--~~~V~I~-~~~~g~l~isei~~~~~~~~~~~~~~~l~~GD~V~a~Vi~v~~ 130 (235)
T 2z0s_A 67 GDVVIGLIQSVGIM--NWFVDIN-SPYVAVLSVQDFLGRPFNPAVDDMQSLLKVGDYIKAKVVAFDK 130 (235)
T ss_dssp TCCEEEEEEEECSS--EEEEECS-SSSCEEEEHHHHHTSCCCTTTTCCTTSSCTTCEEEEEEEEECT
T ss_pred CCEEEEEEEEEeCC--eEEEEeC-CCeEEEEEHHHhCCCccccchhhHhhcCCCCCEEEEEEEEECC
Confidence 35678999988432 4455544 4579999999996521 1268999999988877544
No 101
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=33.18 E-value=9.4 Score=37.84 Aligned_cols=57 Identities=25% Similarity=0.267 Sum_probs=28.0
Q ss_pred ccccceEEEEeeCCCcee-EEecCCCCCceEEecccc----ccCC----ccccCCCCcEEEEEEeCC-Ccc
Q 047168 4 LTRSTGKVTWFDGAKGYG-FIRPDDGGADLFVHQKSI----KSDG----YRTLYENQSVEFDVQLEA-DGK 64 (258)
Q Consensus 4 ~~~~~G~vk~f~~~kGfG-FI~~~~~~~dvF~H~s~l----~~~~----~~~l~~G~~V~F~v~~~~-~G~ 64 (258)
.+.+.|+|+.. .-|| ||..+. +.|-|+|+|.| ...- -..+++||.|...|..-+ +++
T Consensus 668 G~i~~G~V~~i---~~fGaFV~l~~-g~eGLvHiSel~~~~s~~rv~~~~~~~~vGd~V~VkVi~vd~~gr 734 (757)
T 1e3p_A 668 GERILGSVVKT---TTFGAFVSLLP-GKDGLLHISQIRKLAGGKRVENVEDVLGVGQKVQVEIAEIDSRGK 734 (757)
T ss_dssp -----CBEEEC---C-CSCEECCC----CCCCC-------------------CCSSCBCCCCCCCCCSSCC
T ss_pred ccEEEEEEEEc---cccEEEEEEcC-CcEEEEEhHHhccccCCCcccCcccccCCCCEEEEEEEEECCCCC
Confidence 35788999987 4588 666544 58999999999 4321 135888999987776643 454
No 102
>3e2u_E CAP-Gly domain-containing linker protein 1; structural protein microtubule binding, dynactin, cytoskelet associated protein, P150glued; 2.60A {Homo sapiens}
Probab=31.28 E-value=13 Score=22.67 Aligned_cols=17 Identities=35% Similarity=0.757 Sum_probs=12.9
Q ss_pred ccccCCCCCccCCCCCC
Q 047168 215 RCYNCGKSGHLARDCGA 231 (258)
Q Consensus 215 ~C~~Cg~~GH~~~~Cp~ 231 (258)
+|-+|--.||...+|+.
T Consensus 22 YCe~CEVFGH~t~eC~d 38 (42)
T 3e2u_E 22 YCEICEMFGHWATNCND 38 (42)
T ss_dssp EETTTTEESSCGGGCCT
T ss_pred ccccceecccccccCCc
Confidence 67777777777777765
No 103
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=30.27 E-value=11 Score=37.21 Aligned_cols=56 Identities=29% Similarity=0.355 Sum_probs=0.0
Q ss_pred cccceEEEEeeCCCcee-EEecCCCCCceEEeccccccCCc----cccCCCCcEEEEEEeCC-Ccc
Q 047168 5 TRSTGKVTWFDGAKGYG-FIRPDDGGADLFVHQKSIKSDGY----RTLYENQSVEFDVQLEA-DGK 64 (258)
Q Consensus 5 ~~~~G~vk~f~~~kGfG-FI~~~~~~~dvF~H~s~l~~~~~----~~l~~G~~V~F~v~~~~-~G~ 64 (258)
+.+.|+|+.. .-|| ||.... +.|-|+|+|.|...-+ ..|++||.|...|..-+ +++
T Consensus 629 ~i~~G~V~~i---~~fGaFVel~~-g~eGLvHiSel~~~~v~~~~~~~~vGd~V~VkVi~vd~~gr 690 (723)
T 3cdi_A 629 RVYTGKVTRI---VDFGAFVAIGG-GKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGR 690 (723)
T ss_dssp ------------------------------------------------------------------
T ss_pred cEEEEEEEEE---ecceEEEEeCC-CceEEEEHHHcCCccccCcccccCCCCEEEEEEEEECCCCc
Confidence 4678999887 3488 555544 5899999999965322 25889999988876643 454
No 104
>3i4o_A Translation initiation factor IF-1; cytoplasm, protein biosynthesis; 1.47A {Mycobacterium tuberculosis} SCOP: b.40.4.5
Probab=30.25 E-value=1e+02 Score=21.27 Aligned_cols=55 Identities=13% Similarity=0.112 Sum_probs=38.6
Q ss_pred cccceEEEEeeCCCceeEEecCCCCCceEEeccccccCCccccCCCCcEEEEEEeCC
Q 047168 5 TRSTGKVTWFDGAKGYGFIRPDDGGADLFVHQKSIKSDGYRTLYENQSVEFDVQLEA 61 (258)
Q Consensus 5 ~~~~G~vk~f~~~kGfGFI~~~~~~~dvF~H~s~l~~~~~~~l~~G~~V~F~v~~~~ 61 (258)
..++|+|..--. .+|=.+..+++ ..+..|++---....-.+.+||.|.+++..-+
T Consensus 14 ie~~G~Vik~l~-n~~f~V~l~nG-~~~~c~i~GK~Rk~~I~Il~GD~V~ve~~~yd 68 (79)
T 3i4o_A 14 IEVEGRVVEPLP-NAMFRIELENG-HKVLAHISGKMRQHYIRILPEDRVVVELSPYD 68 (79)
T ss_dssp SEEEEEEEEEET-TTEEEEEETTS-CEEEEEECHHHHHTTCCCCTTCEEEEEEETTE
T ss_pred EEEEEEEEEEcC-CCEEEEEeCCC-CEEEEEeCcceecCCccCCCCCEEEEEECccC
Confidence 468999998753 45555665653 67888888664433345899999999886654
No 105
>4he6_A Peptidase family U32; ultra-tight crystal packing, unknown function; 1.10A {Geobacillus thermoleovorans} PDB: 4he5_A
Probab=29.47 E-value=96 Score=21.37 Aligned_cols=21 Identities=19% Similarity=0.278 Sum_probs=14.6
Q ss_pred ccceEEEEeeCCCceeEEecC
Q 047168 6 RSTGKVTWFDGAKGYGFIRPD 26 (258)
Q Consensus 6 ~~~G~vk~f~~~kGfGFI~~~ 26 (258)
.+.|+|..|+.+.++-.|..-
T Consensus 7 ~fvG~V~~~~~~~g~~~ie~r 27 (89)
T 4he6_A 7 EFAGLVLGYDPETGIATVQQR 27 (89)
T ss_dssp GCSEEEEEEETTTTEEEEEES
T ss_pred EEEEEEEEEeCCCCEEEEEEc
Confidence 456889888877676666543
No 106
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=28.93 E-value=12 Score=36.96 Aligned_cols=57 Identities=26% Similarity=0.227 Sum_probs=0.0
Q ss_pred cccceEEEEeeCCCceeEEecCCCCCceEEeccccccCCc----cccCCCCcEEEEEEeCC-Ccc
Q 047168 5 TRSTGKVTWFDGAKGYGFIRPDDGGADLFVHQKSIKSDGY----RTLYENQSVEFDVQLEA-DGK 64 (258)
Q Consensus 5 ~~~~G~vk~f~~~kGfGFI~~~~~~~dvF~H~s~l~~~~~----~~l~~G~~V~F~v~~~~-~G~ 64 (258)
..+.|+|+.. .-||+......+.|-|+|+|.|...-+ ..+++||.|...|..-+ +++
T Consensus 639 ~v~~G~V~~I---~~fGaFVel~~g~eGLvHiSels~~rv~~~~d~~kvGD~V~VkVi~iD~~gr 700 (726)
T 4aid_A 639 KIYDGKVVKV---VDFGAFVNFFGAKDGLVHVSQISNERVAKPSDVLKEGQMVKVKLLGFDDRGK 700 (726)
T ss_dssp -----------------------------------------------------------------
T ss_pred cEEEEEEEEE---eccEEEEEECCCcEEEEEHHHcCcccccCccccCCCCCEEEEEEEEECCCCc
Confidence 5688999987 468865555556899999999976432 24889999987776643 443
No 107
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=28.83 E-value=37 Score=23.25 Aligned_cols=22 Identities=18% Similarity=0.191 Sum_probs=15.4
Q ss_pred cceEEEEeeC---CCceeEEecCCC
Q 047168 7 STGKVTWFDG---AKGYGFIRPDDG 28 (258)
Q Consensus 7 ~~G~vk~f~~---~kGfGFI~~~~~ 28 (258)
..|.|+.... .||||||+-++.
T Consensus 34 ~~G~i~~v~i~~~srGfaFV~F~~~ 58 (89)
T 3d2w_A 34 QYGEVVDVFIPKPFRAFAFVTFADD 58 (89)
T ss_dssp TTSCEEEEECCSSCCSEEEEEESCH
T ss_pred ccCCEEEEEEeeCCCCEEEEEECCH
Confidence 3466666554 489999997764
No 108
>2nn6_I 3'-5' exoribonuclease CSL4 homolog; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2
Probab=28.56 E-value=2.4e+02 Score=22.90 Aligned_cols=70 Identities=11% Similarity=0.088 Sum_probs=41.0
Q ss_pred cccceEEEEeeCCCceeEEecC-------CCCCceEEeccccccCC------ccccCCCCcEEEEEEeCCCcc-ceeecc
Q 047168 5 TRSTGKVTWFDGAKGYGFIRPD-------DGGADLFVHQKSIKSDG------YRTLYENQSVEFDVQLEADGK-YQALDV 70 (258)
Q Consensus 5 ~~~~G~vk~f~~~kGfGFI~~~-------~~~~dvF~H~s~l~~~~------~~~l~~G~~V~F~v~~~~~G~-~~A~~V 70 (258)
+.+.|+|+.... -.-|+... ...-+=++|+++|.... ...|++||.|.-.|..-.++. .....+
T Consensus 83 DvV~G~V~~v~~--~~a~V~I~~v~~~~L~~~~~GlIhisei~~~~~~~~~~~~~l~~GD~V~akVisi~~~~~~i~LS~ 160 (209)
T 2nn6_I 83 AIVTCKVSSINS--RFAKVHILYVGSMPLKNSFRGTIRKEDVRATEKDKVEIYKSFRPGDIVLAKVISLGDAQSNYLLTT 160 (209)
T ss_dssp CEEEEEEEEECS--SEEEEEEEESSSSCCCCSSCSCEEEEGGGTCSSCCCCGGGTCCSSSEEEEEEEEEETTTTEEEEEC
T ss_pred CEEEEEEEEEEC--ceEEEEECccccccccCCceeEEEHHHcccccccccchhhhcCCCCEEEEEEEEEeCCCCeEEEEE
Confidence 567889988842 23444421 12346678999886432 223899999998887654421 233444
Q ss_pred ccCCCC
Q 047168 71 TAPGGA 76 (258)
Q Consensus 71 ~~~~g~ 76 (258)
...+-.
T Consensus 161 k~~~lG 166 (209)
T 2nn6_I 161 AENELG 166 (209)
T ss_dssp CSSSCE
T ss_pred ecCCCc
Confidence 444433
No 109
>3our_B EIIA, phosphotransferase system IIA component; exhibit no hydrolase activity1, lyase-transferase complex; 2.20A {Vibrio vulnificus} SCOP: b.84.3.1
Probab=27.18 E-value=1.1e+02 Score=24.70 Aligned_cols=47 Identities=28% Similarity=0.493 Sum_probs=30.0
Q ss_pred ccceEEEEeeCCC-ceeEEecCCCCCceEEec----cccccCCccc-cCCCCcEE
Q 047168 6 RSTGKVTWFDGAK-GYGFIRPDDGGADLFVHQ----KSIKSDGYRT-LYENQSVE 54 (258)
Q Consensus 6 ~~~G~vk~f~~~k-GfGFI~~~~~~~dvF~H~----s~l~~~~~~~-l~~G~~V~ 54 (258)
...|+|....+.+ -||+.+ ++ +-+|.+|+ ..|...+|.. +++||.|.
T Consensus 77 P~dG~V~~vfpT~HAigi~s-~~-G~EvLIHIGiDTV~L~G~gF~~~V~~Gd~Vk 129 (183)
T 3our_B 77 PVNGTIGKIFETNHAFSIES-DD-GVELFVHFGIDTVELKGEGFTRIAEEGQTVK 129 (183)
T ss_dssp SSSEEEEEECTTSSEEEEEE-TT-SCEEEEECSBSGGGGTTTTEEECSCTTCEEC
T ss_pred CCCeEEEEECCCCCEEEEEe-CC-CCEEEEEecccccccCCccceEEEeCcCEEc
Confidence 5689998877654 455544 44 57999996 3455556653 44666653
No 110
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=26.61 E-value=1.2e+02 Score=19.67 Aligned_cols=38 Identities=18% Similarity=0.219 Sum_probs=31.3
Q ss_pred ccccceEEEEeeCCCceeEEecCCCCCceEEeccccccC
Q 047168 4 LTRSTGKVTWFDGAKGYGFIRPDDGGADLFVHQKSIKSD 42 (258)
Q Consensus 4 ~~~~~G~vk~f~~~kGfGFI~~~~~~~dvF~H~s~l~~~ 42 (258)
..-+-|||+..|..+.-=+|.-+|+ ...++...+|...
T Consensus 17 G~fYlGtI~~V~~~~~~clV~F~D~-s~~W~~~kdi~~~ 54 (58)
T 4hcz_A 17 GLLYLGTIKKVDSAREVCLVQFEDD-SQFLVLWKDISPA 54 (58)
T ss_dssp SCEEEEEEEEEETTTTEEEEEETTS-CEEEEEGGGEEEC
T ss_pred CCEEeEEEEEEecCCCEEEEEEcCC-CeEEEEhHHcccc
Confidence 3467899999999998889998875 6889998888654
No 111
>2ja9_A Exosome complex exonuclease RRP40; RNA-binding protein, RNA, S1 domain, KH domain, hydrolase, RNA-binding, nuclear protein; 2.20A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.51.1.1
Probab=25.71 E-value=2.1e+02 Score=22.64 Aligned_cols=55 Identities=9% Similarity=-0.084 Sum_probs=38.7
Q ss_pred ccccceEEEEeeCCCceeEEecCCC-CCceEEecccccc---CCccccCCCCcEEEEEEeCC
Q 047168 4 LTRSTGKVTWFDGAKGYGFIRPDDG-GADLFVHQKSIKS---DGYRTLYENQSVEFDVQLEA 61 (258)
Q Consensus 4 ~~~~~G~vk~f~~~kGfGFI~~~~~-~~dvF~H~s~l~~---~~~~~l~~G~~V~F~v~~~~ 61 (258)
.+.+.|+|+.-. .++|+..-.. ..+.++|++++.. .-...|.+||-|.-+|..-.
T Consensus 8 gDvViG~V~~v~---~~~~~VdI~~~~~~a~L~~s~~~g~~k~~r~~l~~GDlV~ArV~~~~ 66 (175)
T 2ja9_A 8 NDFVIGVIIGTF---SDSYKVSLQNFSSSVSLSYMAFPNASKKNRPTLQVGDLVYARVCTAE 66 (175)
T ss_dssp TCEEEEEEEEEC---SSEEEEESSTTSCCEEEETTSSTTCCSSSCCCCCTTCEEEEEEEECC
T ss_pred cCEEEEEEEEEE---CcEEEEEECCCCccEEEEHHHCCchhhhhhccCCCCCEEEEEEEEec
Confidence 356788888773 3445544445 6899999999973 22456899999987777643
No 112
>3ayh_B DNA-directed RNA polymerase III subunit RPC8; transcription; 2.19A {Schizosaccharomyces pombe}
Probab=25.63 E-value=1.5e+02 Score=23.90 Aligned_cols=52 Identities=15% Similarity=0.073 Sum_probs=33.1
Q ss_pred cccceEEEEeeCCCceeEEecCCCCCceEEeccccccCCc-----------------------cccCCCCcEEEEEEeC
Q 047168 5 TRSTGKVTWFDGAKGYGFIRPDDGGADLFVHQKSIKSDGY-----------------------RTLYENQSVEFDVQLE 60 (258)
Q Consensus 5 ~~~~G~vk~f~~~kGfGFI~~~~~~~dvF~H~s~l~~~~~-----------------------~~l~~G~~V~F~v~~~ 60 (258)
+.+.|+|+..+ .|||-.... .-|=+||.+++..+.+ ..++.|+.|+|.|..-
T Consensus 83 Ev~~G~Vs~vt---~~GifV~lg-~~eglv~~~~l~~d~~~fd~~~~~~v~~~~~~~~~~~~~~~~~~Gd~VrvrV~~v 157 (203)
T 3ayh_B 83 EVMLGKIKSCS---EEGIRVTIS-FFDDIFIPKDMLFDPCVFRPDERAWVWKIEGEDGSEGTELYFDIDEEIRFQIESE 157 (203)
T ss_dssp CEEEEEEEEEE---TTEEEEECS-SCCCEEEEGGGBCTTEEEEGGGTEEEEEECCCTTSCCEEEECCTTCEEEEEEEEE
T ss_pred CEEEEEEEEEe---ccEEEEEEe-CceEEEEcHHhCCCCceECccCceEEeecccccccccCCcEEcCCCEEEEEEEEE
Confidence 56789999886 456555443 3344567777754332 2477888888887663
No 113
>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.20 E-value=1.3e+02 Score=21.28 Aligned_cols=36 Identities=19% Similarity=0.338 Sum_probs=19.2
Q ss_pred CCcccccCCCCccccccccccCCCCCCCCCCCcccCCCCCCCC
Q 047168 128 GVVCYNCDGVGHVARECTSNRRNSNYNNNSGGCYNCGDPEHFA 170 (258)
Q Consensus 128 ~~~C~~Cg~~GH~a~~Cp~~~~~~~~~~~~~~C~~Cg~~GH~~ 170 (258)
...|..|...|..... + + .-.....|..|...|.+.
T Consensus 45 ~~~C~~C~G~G~~~~~--~--G---~~~~~~~C~~C~G~G~~i 80 (104)
T 2ctt_A 45 VQHCHYCGGSGMETIN--T--G---PFVMRSTCRRCGGRGSII 80 (104)
T ss_dssp CEECSSSSSSCEEEEE--E--T---TEEEEEECSSSSSSSEEC
T ss_pred CccCCCCCCCEEEEEE--e--C---CEEEEEECCcCCCcceEC
Confidence 4678888888854322 0 0 000123566677766543
No 114
>2gpr_A Glucose-permease IIA component; phosphotransferase, enzyme IIA; 2.50A {Mycoplasma capricolum} SCOP: b.84.3.1
Probab=24.09 E-value=1.4e+02 Score=23.27 Aligned_cols=31 Identities=19% Similarity=0.178 Sum_probs=20.5
Q ss_pred cccceEEEEeeCCCceeEEecCCCCCceEEec
Q 047168 5 TRSTGKVTWFDGAKGYGFIRPDDGGADLFVHQ 36 (258)
Q Consensus 5 ~~~~G~vk~f~~~kGfGFI~~~~~~~dvF~H~ 36 (258)
....|+|....+.+-.=-|+.++ +.+|.+|+
T Consensus 49 AP~~G~V~~v~~t~HAigi~~~~-G~evLiHi 79 (154)
T 2gpr_A 49 APVSGKLVTAFPTKHAFGIQTKS-GVEILLHI 79 (154)
T ss_dssp CSSCEEEEECCTTCSEEEEECTT-SCEEEEEC
T ss_pred CCCCeEEEEEccCCeEEEEEcCC-CCEEEEEE
Confidence 35689999866555433344444 57999996
No 115
>2e5q_A PHD finger protein 19; tudor domain, isoform B, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.73 E-value=1.1e+02 Score=20.28 Aligned_cols=37 Identities=19% Similarity=0.246 Sum_probs=31.7
Q ss_pred cccceEEEEeeCCCceeEEecCCCCCceEEeccccccC
Q 047168 5 TRSTGKVTWFDGAKGYGFIRPDDGGADLFVHQKSIKSD 42 (258)
Q Consensus 5 ~~~~G~vk~f~~~kGfGFI~~~~~~~dvF~H~s~l~~~ 42 (258)
.-+.|+|+..+..+..=||.-.|. .+-+++..+|...
T Consensus 22 lfYlgtV~kV~~~~~~ClV~FeD~-s~~wv~~kdi~~~ 58 (63)
T 2e5q_A 22 LYYLGKIKRVSSSKQSCLVTFEDN-SKYWVLWKDIQHA 58 (63)
T ss_dssp CEEEEEECCCCSTTSEEEEEETTS-CEEEEEGGGEECC
T ss_pred CEEEEEEEEEecCCCEEEEEEccC-ceeEEEeeccccc
Confidence 457899999999999999998875 6899999998765
No 116
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=22.79 E-value=42 Score=23.26 Aligned_cols=21 Identities=24% Similarity=0.515 Sum_probs=17.3
Q ss_pred cceEEEEeeCCCceeEEecCC
Q 047168 7 STGKVTWFDGAKGYGFIRPDD 27 (258)
Q Consensus 7 ~~G~vk~f~~~kGfGFI~~~~ 27 (258)
..|.|+.....+||+||+-.+
T Consensus 46 ~~G~v~~v~i~~g~afV~f~~ 66 (97)
T 2xnq_A 46 PYGHIMQINIKNAFGFIQFDN 66 (97)
T ss_dssp GGSCEEEEEECSSEEEEEESS
T ss_pred hcCCEEEEEEeCCEEEEEECC
Confidence 458888888889999999765
No 117
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=22.31 E-value=55 Score=23.21 Aligned_cols=21 Identities=14% Similarity=0.178 Sum_probs=14.7
Q ss_pred ceEEEEe--eCCCceeEEecCCC
Q 047168 8 TGKVTWF--DGAKGYGFIRPDDG 28 (258)
Q Consensus 8 ~G~vk~f--~~~kGfGFI~~~~~ 28 (258)
.|.|+.+ ...|||+||+-.+.
T Consensus 31 ~G~V~~~~l~~~kGfaFVey~~~ 53 (89)
T 2wbr_A 31 HGPLVSFHPYLNQGIALCKYTTR 53 (89)
T ss_dssp HSCEEEEEEETTTTEEEEEESSH
T ss_pred hCCEEEEEEcCCCcEEEEEECCH
Confidence 4556554 35799999997653
No 118
>1ax3_A Iiaglc, glucose permease IIA domain; phosphotransferase system, sugar transport, transferase, phosphorylation, transmembrane; NMR {Bacillus subtilis} SCOP: b.84.3.1 PDB: 1gpr_A
Probab=21.74 E-value=1.4e+02 Score=23.51 Aligned_cols=48 Identities=25% Similarity=0.351 Sum_probs=27.5
Q ss_pred ccceEEEEeeCCCceeEEecCCCCCceEEec----cccccCCcc-ccCCCCcEE
Q 047168 6 RSTGKVTWFDGAKGYGFIRPDDGGADLFVHQ----KSIKSDGYR-TLYENQSVE 54 (258)
Q Consensus 6 ~~~G~vk~f~~~kGfGFI~~~~~~~dvF~H~----s~l~~~~~~-~l~~G~~V~ 54 (258)
...|+|....+.+-.=-|+.++ +.+|.+|+ ..|...+|. .+++||.|.
T Consensus 55 P~~G~V~~v~~t~hAigi~t~~-G~evLiHIGidTV~l~G~gF~~~V~~Gd~V~ 107 (162)
T 1ax3_A 55 PVRGKILNVFPTKHAIGLQSDG-GREILIHFGIDTVSLKGEGFTSFVSEGDRVE 107 (162)
T ss_dssp SCCEEEEECCSSSSEEEEESSS-SCEEEEECSSSTTTTTTTTEEESCCCCSEEC
T ss_pred CCCeEEEEEccCCeEEEEEcCC-CCEEEEEECccchhcCCCccEEEEeCCCEEc
Confidence 4679998765544333344444 57999996 223333444 345666654
No 119
>1f3z_A EIIA-GLC, glucose-specific phosphocarrier; phosphotransferase, signal transduction, sugar transport; 1.98A {Escherichia coli} SCOP: b.84.3.1 PDB: 1f3g_A 1ggr_A 1gla_F 1glb_F* 1glc_F* 1gld_F* 1gle_F* 1o2f_A 2f3g_A
Probab=21.38 E-value=1.7e+02 Score=22.90 Aligned_cols=31 Identities=26% Similarity=0.288 Sum_probs=20.1
Q ss_pred cccceEEEEeeCCCceeEEecCCCCCceEEec
Q 047168 5 TRSTGKVTWFDGAKGYGFIRPDDGGADLFVHQ 36 (258)
Q Consensus 5 ~~~~G~vk~f~~~kGfGFI~~~~~~~dvF~H~ 36 (258)
....|+|....+.+-.=-|+.++ +.+|.+|+
T Consensus 54 AP~~G~V~~v~~t~hAigi~t~~-G~evLiHi 84 (161)
T 1f3z_A 54 APVDGTIGKIFETNHAFSIESDS-GVELFVHF 84 (161)
T ss_dssp CSSSEEEEEECTTSSEEEEEETT-SCEEEEEC
T ss_pred CCCCeEEEEEccCCeEEEEEeCC-CCEEEEEE
Confidence 35689998766554433344444 47999995
No 120
>3nyy_A Putative glycyl-glycine endopeptidase LYTM; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE 2PE SO4; 1.60A {Ruminococcus gnavus}
Probab=20.63 E-value=83 Score=26.57 Aligned_cols=34 Identities=21% Similarity=0.089 Sum_probs=23.4
Q ss_pred ccceEEEEeeCCCceeEEe-cC--CCCCceEEecccc
Q 047168 6 RSTGKVTWFDGAKGYGFIR-PD--DGGADLFVHQKSI 39 (258)
Q Consensus 6 ~~~G~vk~f~~~kGfGFI~-~~--~~~~dvF~H~s~l 39 (258)
...|+|..-....+||... .+ ++-.-+|.|.+.+
T Consensus 145 ~~~G~V~~~g~~~~~G~~V~I~H~~G~~t~Y~HL~~~ 181 (252)
T 3nyy_A 145 MTDGVVTEKGWLEKGGWRIGITAPTGAYFYYAHLDSY 181 (252)
T ss_dssp SSCEEEEEEEEETTTEEEEEEECTTSCEEEEEEESEE
T ss_pred ccCEEEEEEEecCCCCCEEEEEeCCcEEEEEeeCCCC
Confidence 4679998877777888432 22 3344588999887
No 121
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=20.58 E-value=47 Score=22.81 Aligned_cols=19 Identities=21% Similarity=0.480 Sum_probs=16.4
Q ss_pred eEEEEeeCCCceeEEecCC
Q 047168 9 GKVTWFDGAKGYGFIRPDD 27 (258)
Q Consensus 9 G~vk~f~~~kGfGFI~~~~ 27 (258)
|.|......+||+||+-.+
T Consensus 42 g~v~~~~~~~g~afV~f~~ 60 (99)
T 2cpd_A 42 GAVERVKKIRDYAFVHFSN 60 (99)
T ss_dssp TCEEEEEECSSEEEEEESS
T ss_pred cceEEEEEeCCeEEEEeCC
Confidence 7888888899999998665
Done!