Query 047170
Match_columns 89
No_of_seqs 109 out of 351
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 14:32:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047170.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047170hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1nee_A EIF-2-beta, probable tr 100.0 1.2E-30 4E-35 182.9 0.9 67 1-70 54-124 (138)
2 2e9h_A EIF-5, eukaryotic trans 100.0 3.8E-29 1.3E-33 178.6 8.3 73 1-75 53-139 (157)
3 2d74_B Translation initiation 100.0 2.6E-30 8.9E-35 183.0 1.5 67 1-70 56-126 (148)
4 2g2k_A EIF-5, eukaryotic trans 99.9 8.7E-29 3E-33 178.6 6.0 68 1-70 46-120 (170)
5 3cw2_K Translation initiation 99.9 4E-31 1.4E-35 185.4 -6.2 68 1-70 54-125 (139)
6 1k8b_A EIF-2-beta, probable tr 99.5 4.2E-15 1.5E-19 89.1 1.9 32 1-35 21-52 (52)
7 1k81_A EIF-2-beta, probable tr 99.0 3.1E-10 1.1E-14 63.1 3.5 22 49-70 1-22 (36)
8 3a43_A HYPD, hydrogenase nicke 92.8 0.071 2.4E-06 36.2 2.9 23 48-70 107-129 (139)
9 2kdx_A HYPA, hydrogenase/ureas 87.0 0.32 1.1E-05 31.7 2.1 61 8-70 43-112 (119)
10 2k2d_A Ring finger and CHY zin 70.6 1.4 4.9E-05 27.3 1.0 16 48-63 55-70 (79)
11 2ogh_A Eukaryotic translation 68.1 4.4 0.00015 26.4 3.0 39 9-47 53-95 (108)
12 2xzm_F EIF1; ribosome, transla 66.0 4.1 0.00014 26.3 2.5 39 9-47 46-88 (101)
13 1l8d_A DNA double-strand break 64.3 1.7 5.9E-05 27.4 0.5 11 49-59 48-58 (112)
14 1d1r_A Hypothetical 11.4 KD pr 57.9 4.7 0.00016 26.8 1.7 38 9-47 62-99 (116)
15 4h62_V Mediator of RNA polymer 55.8 3 0.0001 21.8 0.4 14 34-47 7-20 (31)
16 2lcq_A Putative toxin VAPC6; P 52.2 6.9 0.00023 26.2 1.8 9 49-57 149-157 (165)
17 2lo3_A SAGA-associated factor 49.8 2.4 8.1E-05 24.2 -0.7 14 44-57 10-26 (44)
18 2if1_A EIF1, SUI1; translation 48.0 8.2 0.00028 25.9 1.7 39 9-47 71-113 (126)
19 2jny_A Uncharacterized BCR; st 47.8 6.7 0.00023 23.6 1.1 31 48-78 10-44 (67)
20 2opv_A KHSRP protein; KH domai 47.0 40 0.0014 20.0 4.6 34 10-45 35-76 (85)
21 1ryq_A DNA-directed RNA polyme 44.6 8.8 0.0003 23.5 1.3 11 50-60 25-35 (69)
22 3na7_A HP0958; flagellar bioge 43.6 13 0.00043 26.8 2.2 21 36-56 208-230 (256)
23 1pft_A TFIIB, PFTFIIBN; N-term 43.2 15 0.00053 19.9 2.1 12 48-59 5-16 (50)
24 2hf1_A Tetraacyldisaccharide-1 41.6 9.9 0.00034 22.8 1.2 31 48-78 8-42 (68)
25 1qxf_A GR2, 30S ribosomal prot 41.6 10 0.00036 23.1 1.3 17 48-64 7-23 (66)
26 2jr6_A UPF0434 protein NMA0874 41.0 10 0.00036 22.8 1.2 31 48-78 8-42 (68)
27 4bbr_M Transcription initiatio 40.5 11 0.00038 28.5 1.5 16 48-63 21-36 (345)
28 2js4_A UPF0434 protein BB2007; 39.7 9.9 0.00034 23.0 1.0 30 48-78 8-42 (70)
29 3vhs_A ATPase wrnip1; zinc fin 38.9 11 0.00038 19.4 0.9 9 48-56 6-14 (29)
30 1lv3_A Hypothetical protein YA 38.2 10 0.00035 23.2 0.8 12 48-59 9-20 (68)
31 3mhs_E SAGA-associated factor 37.7 5.9 0.0002 25.9 -0.3 15 43-57 67-84 (96)
32 2pk7_A Uncharacterized protein 36.5 9.9 0.00034 22.9 0.6 30 48-78 8-42 (69)
33 1qyp_A RNA polymerase II; tran 35.2 15 0.00053 20.6 1.2 15 48-62 15-29 (57)
34 2akl_A PHNA-like protein PA012 35.0 12 0.00041 25.8 0.9 27 33-59 12-38 (138)
35 3j20_W 30S ribosomal protein S 34.6 16 0.00054 22.0 1.3 16 48-63 15-30 (63)
36 1tfi_A Transcriptional elongat 34.2 17 0.0006 20.4 1.4 16 48-63 9-24 (50)
37 2e2z_A TIM15; protein import, 33.8 14 0.00049 24.1 1.1 10 48-57 38-47 (100)
38 1brv_A Protein G, BRSV-G regio 33.6 11 0.00039 20.0 0.5 10 48-57 13-22 (32)
39 3k1f_M Transcription initiatio 33.6 17 0.00057 26.5 1.5 16 48-63 21-36 (197)
40 3p8b_A DNA-directed RNA polyme 31.5 19 0.00064 22.7 1.3 10 50-59 37-46 (81)
41 2xzm_6 RPS27E; ribosome, trans 31.3 19 0.00065 22.7 1.3 16 48-63 32-47 (81)
42 3u5c_b RP61, YS20, 40S ribosom 30.2 23 0.00079 22.4 1.6 16 48-63 34-49 (82)
43 3r8s_0 50S ribosomal protein L 30.0 17 0.00057 21.0 0.8 10 48-57 27-36 (56)
44 3j20_Y 30S ribosomal protein S 29.9 45 0.0015 18.6 2.6 11 48-58 19-29 (50)
45 3mcb_B Transcription factor BT 29.5 10 0.00035 22.4 -0.2 26 20-46 27-52 (58)
46 1dl6_A Transcription factor II 29.5 18 0.00062 20.8 0.9 10 49-58 12-21 (58)
47 1lko_A Rubrerythrin all-iron(I 28.3 21 0.00071 24.7 1.2 14 50-63 173-186 (191)
48 2gmg_A Hypothetical protein PF 27.9 18 0.00061 23.8 0.7 13 48-60 84-96 (105)
49 3iz6_X 40S ribosomal protein S 27.8 23 0.0008 22.5 1.3 16 48-63 36-51 (86)
50 4ay7_A Methylcobalamin\: coenz 27.6 14 0.00049 27.2 0.3 47 14-61 282-333 (348)
51 1x4m_A FAR upstream element bi 27.5 73 0.0025 19.2 3.6 34 10-45 36-77 (94)
52 3lkx_A Transcription factor BT 25.8 13 0.00046 22.4 -0.1 27 20-47 27-53 (66)
53 3noy_A 4-hydroxy-3-methylbut-2 25.8 27 0.00092 27.5 1.5 15 48-62 271-285 (366)
54 2fiy_A Protein FDHE homolog; F 25.7 41 0.0014 25.3 2.5 16 48-63 182-198 (309)
55 3v2d_5 50S ribosomal protein L 25.7 22 0.00076 20.8 0.8 10 48-57 30-39 (60)
56 1pvm_A Conserved hypothetical 25.5 10 0.00034 24.7 -0.9 14 49-62 170-183 (184)
57 3irb_A Uncharacterized protein 25.0 23 0.00078 23.6 0.9 16 48-63 61-76 (145)
58 2kq9_A DNAK suppressor protein 24.5 20 0.00068 23.0 0.5 19 39-57 67-90 (112)
59 3o9x_A Uncharacterized HTH-typ 23.6 54 0.0018 20.3 2.5 13 50-62 4-16 (133)
60 2zjr_Z 50S ribosomal protein L 23.1 27 0.00092 20.4 0.8 10 48-57 30-39 (60)
61 3cg7_A CRN-4, cell death-relat 22.9 23 0.00079 26.0 0.6 12 48-59 267-278 (308)
62 6rxn_A Rubredoxin; electron tr 22.8 36 0.0012 18.9 1.3 14 49-62 31-44 (46)
63 3k7a_M Transcription initiatio 22.8 19 0.00065 26.9 0.2 16 48-63 21-36 (345)
64 2jvx_A NF-kappa-B essential mo 22.3 39 0.0013 17.1 1.2 8 49-56 4-11 (28)
65 1zzo_A RV1677; thioredoxin fol 22.2 55 0.0019 19.0 2.2 24 24-47 108-132 (136)
66 3lpe_B DNA-directed RNA polyme 22.0 28 0.00095 20.4 0.8 8 50-57 15-22 (59)
67 3q87_A Putative uncharacterize 21.7 60 0.002 21.7 2.4 9 48-56 99-107 (125)
68 1yk4_A Rubredoxin, RD; electro 21.6 39 0.0013 19.1 1.3 15 49-63 36-50 (52)
69 3j21_g 50S ribosomal protein L 21.5 44 0.0015 19.1 1.5 19 39-57 5-23 (51)
70 2oik_A Histidine triad (HIT) p 21.4 23 0.00079 23.1 0.3 36 51-86 12-50 (154)
71 1tjl_A DNAK suppressor protein 20.7 37 0.0012 23.1 1.2 10 48-57 111-120 (151)
72 2v3b_B Rubredoxin 2, rubredoxi 20.6 41 0.0014 19.2 1.3 14 50-63 38-51 (55)
73 3ha9_A Uncharacterized thiored 20.6 71 0.0024 19.7 2.6 24 24-47 137-161 (165)
74 2apo_B Ribosome biogenesis pro 20.5 32 0.0011 20.3 0.8 8 50-57 20-27 (60)
75 2p4p_A Hypothetical protein HD 20.3 65 0.0022 19.0 2.2 21 26-46 7-27 (86)
76 2gnr_A Conserved hypothetical 20.1 33 0.0011 23.0 0.9 15 49-63 62-76 (145)
No 1
>1nee_A EIF-2-beta, probable translation initiation factor 2 beta subunit; two domain protein, mixed alpha-beta structure; NMR {Methanothermobacterthermautotrophicus} SCOP: d.241.1.1 g.59.1.1
Probab=99.96 E-value=1.2e-30 Score=182.87 Aligned_cols=67 Identities=33% Similarity=0.730 Sum_probs=65.7
Q ss_pred CCCCcccHhHHHHHHHhhccceeecCCceEEEEeecCHHHHHHhhcc----ceecCCCCCCceeEEEcCcEEEE
Q 047170 1 MHRQPENVDVVTFLLSEMGTSGSLDGQQHLVVKGRFASKYIEGILHK----FVICGCCKSPDTILTNGNHLFFL 70 (89)
Q Consensus 1 L~R~p~h~~v~kyl~~ELgt~g~id~~~rlii~G~~~~~~i~~~L~~----yV~C~~C~sPdT~L~k~~rl~~l 70 (89)
|||+|+| |+|||++||||+|++| +++|||||+|++++||++|++ ||+|++|+||||.|++++|++++
T Consensus 54 L~R~p~h--v~ky~~~ELGt~g~id-~~rlii~G~~~~~~i~~~L~~yI~~yVlC~~C~sPdT~l~k~~r~~~l 124 (138)
T 1nee_A 54 LNRDPQH--LLKFLLRELGTAGNLE-GGRAILQGKFTHFLINERIEDYVNKFVICHECNRPDTRIIREGRISLL 124 (138)
T ss_dssp HCSSHHH--HHHHHHHHCCSCCCCB-TTTEEEESSCSSSHHHHHHHHHHTHHHHHTCCSSCSSCCEEETTTTEE
T ss_pred HCCCHHH--HHHHHHHHhCCceeec-CCEEEEEeeeCHHHHHHHHHHHHhhEEECCCCCCcCcEEEEcCCeEEE
Confidence 6999999 9999999999999999 889999999999999999999 99999999999999999999999
No 2
>2e9h_A EIF-5, eukaryotic translation initiation factor 5; zinc binding, C4 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.96 E-value=3.8e-29 Score=178.57 Aligned_cols=73 Identities=21% Similarity=0.412 Sum_probs=69.1
Q ss_pred CCCCcccHhHHHHHHHhhccceeec-CCceEEEEeecCHHHHHHhhcc----ceecCCCCCCceeEEE--cCcEEEE---
Q 047170 1 MHRQPENVDVVTFLLSEMGTSGSLD-GQQHLVVKGRFASKYIEGILHK----FVICGCCKSPDTILTN--GNHLFFL--- 70 (89)
Q Consensus 1 L~R~p~h~~v~kyl~~ELgt~g~id-~~~rlii~G~~~~~~i~~~L~~----yV~C~~C~sPdT~L~k--~~rl~~l--- 70 (89)
|||+|+| |+|||++||||+|++| ++++|||||+|++++||++|++ ||+|++|+||||.|++ ++|+++|
T Consensus 53 L~R~p~h--v~ky~~~ELGt~g~id~~~~rlii~G~~~~~~i~~~L~~yI~~YVlC~~C~sPdT~L~~~~~~r~~~l~C~ 130 (157)
T 2e9h_A 53 LNRPPTY--PTKYFGCELGAQTQFDVKNDRYIVNGSHEANKLQDMLDGFIKKFVLCPECENPETDLHVNPKKQTIGNSCK 130 (157)
T ss_dssp TTSCTHH--HHHHHHHHHTCCEEEETTTTEEEEEBCCCHHHHHHHHHHHHHHTTSCTTTCCSCCEEEEETTTTEEEEECS
T ss_pred HCCCHHH--HHHHHHHHhCCceeecCCCCEEEEEeeeCHHHHHHHHHHHHHHeEECCCCCCCccEEEEecCCCEEEEEcc
Confidence 7999999 9999999999999999 4999999999999999999999 9999999999999998 7999999
Q ss_pred ----Eeecc
Q 047170 71 ----IFPIK 75 (89)
Q Consensus 71 ----v~~ik 75 (89)
..||.
T Consensus 131 ACGa~~~V~ 139 (157)
T 2e9h_A 131 ACGYRGMLD 139 (157)
T ss_dssp SSCCEEECC
T ss_pred CCCCCCccc
Confidence 66664
No 3
>2d74_B Translation initiation factor 2 beta subunit; protein complex; 2.80A {Pyrococcus furiosus} PDB: 2dcu_B*
Probab=99.96 E-value=2.6e-30 Score=183.01 Aligned_cols=67 Identities=39% Similarity=0.825 Sum_probs=65.7
Q ss_pred CCCCcccHhHHHHHHHhhccceeecCCceEEEEeecCHHHHHHhhcc----ceecCCCCCCceeEEEcCcEEEE
Q 047170 1 MHRQPENVDVVTFLLSEMGTSGSLDGQQHLVVKGRFASKYIEGILHK----FVICGCCKSPDTILTNGNHLFFL 70 (89)
Q Consensus 1 L~R~p~h~~v~kyl~~ELgt~g~id~~~rlii~G~~~~~~i~~~L~~----yV~C~~C~sPdT~L~k~~rl~~l 70 (89)
|||+|+| |+|||++||||+|++| +|+|||||+|++++||++|++ ||+|++|+||||.|++++|+++|
T Consensus 56 L~R~p~h--v~ky~~~ELGt~g~id-~~rlii~G~~~~~~i~~~L~~yI~~yVlC~~C~sPdT~L~k~~r~~~l 126 (148)
T 2d74_B 56 LNRDPQH--LLKFLLREIATAGTLE-GRRVVLQGRFTPYLIANKLKKYIKEYVICPVCGSPDTKIIKRDRFHFL 126 (148)
T ss_dssp HTCCSHH--HHHHHHHHSCCCEEEE-TTEEEESSCCCHHHHHHHHHHHHHHHSSCSSSCCTTCCCCBSSSSBCC
T ss_pred HCCCHHH--HHHHHHHHhCCceeec-CCEEEEEeeeCHHHHHHHHHHHHHHEEECCCCCCcCcEEEEeCCEEEE
Confidence 6999999 9999999999999999 889999999999999999999 99999999999999999999999
No 4
>2g2k_A EIF-5, eukaryotic translation initiation factor 5; EIF125 fold; NMR {Homo sapiens}
Probab=99.95 E-value=8.7e-29 Score=178.61 Aligned_cols=68 Identities=22% Similarity=0.465 Sum_probs=66.5
Q ss_pred CCCCcccHhHHHHHHHhhccceeecC-CceEEEEeecCHHHHHHhhcc----ceecCCCCCCceeEEE--cCcEEEE
Q 047170 1 MHRQPENVDVVTFLLSEMGTSGSLDG-QQHLVVKGRFASKYIEGILHK----FVICGCCKSPDTILTN--GNHLFFL 70 (89)
Q Consensus 1 L~R~p~h~~v~kyl~~ELgt~g~id~-~~rlii~G~~~~~~i~~~L~~----yV~C~~C~sPdT~L~k--~~rl~~l 70 (89)
|||+|+| |++||++||||+|++|+ +++|||||+|++++||++|++ ||+|++|+||||.|++ ++++++|
T Consensus 46 L~R~p~h--v~kyf~~ELGt~g~id~~~~rliinG~~~~~~i~~~L~~yI~~YVlC~~C~sPdT~L~k~~~~r~~~l 120 (170)
T 2g2k_A 46 LNRPPTY--PTKYFGCELGAQTQFDVKNDRYIVNGSHEANKLQDMLDGFIKKFVLCPECENPETDLHVNPKKQTIGN 120 (170)
T ss_dssp HSSCCTT--THHHHHHHTTCCCEECTTTCCEEEEBCCCHHHHHHHHHHHHHHHHSCTTTSSSCEEEEEETTTTEEEE
T ss_pred hCCCHHH--HHHHHHHHhCCceeecCCCCEEEEEeeeCHHHHHHHHHHHHHHeEECCCCCCCccEEEEecCCCEEEE
Confidence 7999999 99999999999999998 899999999999999999999 9999999999999999 8999999
No 5
>3cw2_K Translation initiation factor 2 subunit beta; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2nxu_A 2qmu_C* 3v11_C*
Probab=99.95 E-value=4e-31 Score=185.44 Aligned_cols=68 Identities=31% Similarity=0.723 Sum_probs=66.6
Q ss_pred CCCCcccHhHHHHHHHhhccceeecCCceEEEEeecCHHHHHHhhcc----ceecCCCCCCceeEEEcCcEEEE
Q 047170 1 MHRQPENVDVVTFLLSEMGTSGSLDGQQHLVVKGRFASKYIEGILHK----FVICGCCKSPDTILTNGNHLFFL 70 (89)
Q Consensus 1 L~R~p~h~~v~kyl~~ELgt~g~id~~~rlii~G~~~~~~i~~~L~~----yV~C~~C~sPdT~L~k~~rl~~l 70 (89)
|||+|+| |+|||++||||+|++|++++|||||+|++++||++|++ ||+|++|+||||.|++++|++++
T Consensus 54 L~R~p~h--v~ky~~~ELGt~g~id~~~rlii~G~~~~~~i~~~L~~yI~~yVlC~~C~sPdT~l~k~~r~~~l 125 (139)
T 3cw2_K 54 IRREDKI--CMKYLLKELAAPGNVDDKGELVIQGKFSSQVINTLMERFLKAYVECSTCKSLDTILKKEKKSWYI 125 (139)
T ss_dssp TSSCCTT--THHHHSCCSSCCCCCSSSCCCTTTCSCCSCCSCSTTTTTSSCCSSCCSSSSSCCCSCSSCSTTTS
T ss_pred HCCCHHH--HHHHHHHHhCCceEECCCCeEEEEeeeCHHHHHHHHHHHHHHeeECCCCCCcCcEEEEeCCeEEE
Confidence 7999999 99999999999999999889999999999999999999 99999999999999999999988
No 6
>1k8b_A EIF-2-beta, probable translation initiation factor 2 beta subunit; N-terminal domain, AIF2 subunit beta; NMR {Methanocaldococcus jannaschii} SCOP: d.241.1.1
Probab=99.50 E-value=4.2e-15 Score=89.09 Aligned_cols=32 Identities=31% Similarity=0.636 Sum_probs=30.7
Q ss_pred CCCCcccHhHHHHHHHhhccceeecCCceEEEEee
Q 047170 1 MHRQPENVDVVTFLLSEMGTSGSLDGQQHLVVKGR 35 (89)
Q Consensus 1 L~R~p~h~~v~kyl~~ELgt~g~id~~~rlii~G~ 35 (89)
|||+|+| |+|||++||||+|++| +++|+|||+
T Consensus 21 L~R~p~h--v~ky~~~ELGt~g~id-~~rlii~G~ 52 (52)
T 1k8b_A 21 VNRDEEF--FAKYLLKETGSAGNLE-GGRLILQRR 52 (52)
T ss_dssp HHTCHHH--HHHHHHHHHSSEEEEE-TTEEEEECC
T ss_pred HCCCHHH--HHHHHHHHhCCCeeec-CCEEEEeCC
Confidence 6899999 9999999999999999 889999996
No 7
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=98.99 E-value=3.1e-10 Score=63.14 Aligned_cols=22 Identities=36% Similarity=0.742 Sum_probs=21.5
Q ss_pred eecCCCCCCceeEEEcCcEEEE
Q 047170 49 VICGCCKSPDTILTNGNHLFFL 70 (89)
Q Consensus 49 V~C~~C~sPdT~L~k~~rl~~l 70 (89)
|+|++|+||||+|++++|+++|
T Consensus 1 VlC~~C~~peT~l~~~~~~~~l 22 (36)
T 1k81_A 1 VICRECGKPDTKIIKEGRVHLL 22 (36)
T ss_dssp CCCSSSCSCEEEEEEETTEEEE
T ss_pred CCCcCCCCCCcEEEEeCCcEEE
Confidence 8999999999999999999999
No 8
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=92.84 E-value=0.071 Score=36.19 Aligned_cols=23 Identities=26% Similarity=0.585 Sum_probs=19.6
Q ss_pred ceecCCCCCCceeEEEcCcEEEE
Q 047170 48 FVICGCCKSPDTILTNGNHLFFL 70 (89)
Q Consensus 48 yV~C~~C~sPdT~L~k~~rl~~l 70 (89)
+..||.|+||+..++....+.+.
T Consensus 107 ~~~CP~Cgs~~~~i~~G~el~I~ 129 (139)
T 3a43_A 107 FLACPKCGSHDFEVVKGRGVYVA 129 (139)
T ss_dssp GCSCSSSSCCCEEEEESSCEEEE
T ss_pred CCcCccccCCccEEecCCeEEEE
Confidence 68899999999999887776654
No 9
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=87.02 E-value=0.32 Score=31.71 Aligned_cols=61 Identities=16% Similarity=0.248 Sum_probs=35.0
Q ss_pred HhHHHHHHHhhcccee-ecCCceEEEEee---cCH---HHHHHhhcc-ce-ecCCCCCCceeEEEcCcEEEE
Q 047170 8 VDVVTFLLSEMGTSGS-LDGQQHLVVKGR---FAS---KYIEGILHK-FV-ICGCCKSPDTILTNGNHLFFL 70 (89)
Q Consensus 8 ~~v~kyl~~ELgt~g~-id~~~rlii~G~---~~~---~~i~~~L~~-yV-~C~~C~sPdT~L~k~~rl~~l 70 (89)
.+.++|....+ +.|+ +=.+-+|.|.-. +.- ...-. ++. +. .||.|+||++.++..+.+.+.
T Consensus 43 ~e~l~f~f~~~-~~gt~~~e~a~L~i~~~p~~~~C~~CG~~~e-~~~~~~~~CP~Cgs~~~~i~~G~el~i~ 112 (119)
T 2kdx_A 43 KSLFVSAFETF-REESLVCKDAILDIVDEKVELECKDCSHVFK-PNALDYGVCEKCHSKNVIITQGNEMRLL 112 (119)
T ss_dssp HHHHHHHHHHH-GGGCTTTSSCCEEEEEECCEEECSSSSCEEC-SCCSTTCCCSSSSSCCCEEEESSCCEEE
T ss_pred HHHHHHHHHHH-HhCChhhcCcEEEEEeccceEEcCCCCCEEe-CCCCCCCcCccccCCCcEEecCCeEEEE
Confidence 34677777666 5566 533447776521 000 00000 122 66 899999999998876655543
No 10
>2k2d_A Ring finger and CHY zinc finger domain- containing protein 1; zinc-binding protein, cytoplasm, metal-binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=70.63 E-value=1.4 Score=27.34 Aligned_cols=16 Identities=25% Similarity=0.391 Sum_probs=13.7
Q ss_pred ceecCCCCCCceeEEE
Q 047170 48 FVICGCCKSPDTILTN 63 (89)
Q Consensus 48 yV~C~~C~sPdT~L~k 63 (89)
+..|+.|+|.+|.++.
T Consensus 55 g~kC~~C~SyNTr~~~ 70 (79)
T 2k2d_A 55 GMKCKICESYNTAQAG 70 (79)
T ss_dssp CCCCTTTSCCCEEESC
T ss_pred cccCcCCCCcCeEecC
Confidence 4489999999999875
No 11
>2ogh_A Eukaryotic translation initiation factor EIF-1; alpha-beta protein; NMR {Saccharomyces cerevisiae}
Probab=68.09 E-value=4.4 Score=26.37 Aligned_cols=39 Identities=13% Similarity=0.288 Sum_probs=30.0
Q ss_pred hHHHHHHHhhccceeecCC----ceEEEEeecCHHHHHHhhcc
Q 047170 9 DVVTFLLSEMGTSGSLDGQ----QHLVVKGRFASKYIEGILHK 47 (89)
Q Consensus 9 ~v~kyl~~ELgt~g~id~~----~rlii~G~~~~~~i~~~L~~ 47 (89)
.+.+.|.+.+|+.|++-++ ..+.|+|.+..+-.+=+..+
T Consensus 53 ~lak~lKkk~acggsV~~~~~~g~~I~iQGD~r~~v~~~L~~~ 95 (108)
T 2ogh_A 53 RILKVLKKDFACNGNIVKDPEMGEIIQLQGDQRAKVCEFMISQ 95 (108)
T ss_dssp HHHHHHHHHHCCCEEEECCTTSSCEEEEESSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCceEEecCCCCceEEEEcCCHHHHHHHHHHHc
Confidence 4899999999999999422 28999999987755544443
No 12
>2xzm_F EIF1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_F
Probab=66.03 E-value=4.1 Score=26.30 Aligned_cols=39 Identities=3% Similarity=0.142 Sum_probs=30.0
Q ss_pred hHHHHHHHhhccceeec-CC---ceEEEEeecCHHHHHHhhcc
Q 047170 9 DVVTFLLSEMGTSGSLD-GQ---QHLVVKGRFASKYIEGILHK 47 (89)
Q Consensus 9 ~v~kyl~~ELgt~g~id-~~---~rlii~G~~~~~~i~~~L~~ 47 (89)
.++|.|.+.+|+.|++- +. ..+.|+|.+..+-.+-++.+
T Consensus 46 ~laK~lKkk~acggsV~~~~~~g~~I~iQGD~r~~v~~~L~~~ 88 (101)
T 2xzm_F 46 KIMKYWKKWLSCNATIVEEDEGKKVIKLNGDHRNQIQQFLSEE 88 (101)
T ss_dssp HHHHHHHHHHTSCCCEEECSTTCEEEEEESCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCeEEecCCCCceEEEEeCcHHHHHHHHHHHc
Confidence 39999999999999993 32 28999999987755554443
No 13
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=64.31 E-value=1.7 Score=27.38 Aligned_cols=11 Identities=27% Similarity=0.386 Sum_probs=8.6
Q ss_pred eecCCCCCCce
Q 047170 49 VICGCCKSPDT 59 (89)
Q Consensus 49 V~C~~C~sPdT 59 (89)
-.||.|++|-+
T Consensus 48 ~~CPvCgs~l~ 58 (112)
T 1l8d_A 48 GKCPVCGRELT 58 (112)
T ss_dssp EECTTTCCEEC
T ss_pred CCCCCCCCcCC
Confidence 36999999744
No 14
>1d1r_A Hypothetical 11.4 KD protein YCIH in PYRF-OSMB intergenic region; alpha-beta plait, open-faced beta sandwich, ferredoxin-like fold; NMR {Escherichia coli} SCOP: d.64.1.1
Probab=57.87 E-value=4.7 Score=26.81 Aligned_cols=38 Identities=13% Similarity=0.162 Sum_probs=30.4
Q ss_pred hHHHHHHHhhccceeecCCceEEEEeecCHHHHHHhhcc
Q 047170 9 DVVTFLLSEMGTSGSLDGQQHLVVKGRFASKYIEGILHK 47 (89)
Q Consensus 9 ~v~kyl~~ELgt~g~id~~~rlii~G~~~~~~i~~~L~~ 47 (89)
.+++.|.+.+|+.|++- ++.+.|+|.+..+-.+=++.+
T Consensus 62 ~laK~LKkk~acgGtVk-~~~IeiQGD~r~~i~~~L~~~ 99 (116)
T 1d1r_A 62 KLAAELKKKCGCGGAVK-DGVIEIQGDKRDLLKSLLEAK 99 (116)
T ss_dssp HHHHHHTTSSSSCCBCC-SSCEEECSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCcEEc-CCEEEEeCcHHHHHHHHHHHc
Confidence 38899999999999997 459999999987755544443
No 15
>4h62_V Mediator of RNA polymerase II transcription subun; mediator complex, nucleus; HET: MES; 3.00A {Saccharomyces cerevisiae}
Probab=55.80 E-value=3 Score=21.79 Aligned_cols=14 Identities=43% Similarity=0.638 Sum_probs=10.5
Q ss_pred eecCHHHHHHhhcc
Q 047170 34 GRFASKYIEGILHK 47 (89)
Q Consensus 34 G~~~~~~i~~~L~~ 47 (89)
-+|+.++|+.+|++
T Consensus 7 trfdekqieelldn 20 (31)
T 4h62_V 7 TRFDEKQIEELLDN 20 (31)
T ss_dssp ---CHHHHHHHHHH
T ss_pred ccccHHHHHHHHHH
Confidence 47999999999998
No 16
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=52.18 E-value=6.9 Score=26.17 Aligned_cols=9 Identities=33% Similarity=0.685 Sum_probs=7.4
Q ss_pred eecCCCCCC
Q 047170 49 VICGCCKSP 57 (89)
Q Consensus 49 V~C~~C~sP 57 (89)
..||.|+||
T Consensus 149 ~~Cp~CG~~ 157 (165)
T 2lcq_A 149 GVCPDCGSK 157 (165)
T ss_dssp GBCTTTCCB
T ss_pred CcCCCCCCc
Confidence 479999987
No 17
>2lo3_A SAGA-associated factor 73; zinc-finger, deubiquitination, transcription factor, SAGA CO transcription; NMR {Saccharomyces cerevisiae}
Probab=49.85 E-value=2.4 Score=24.16 Aligned_cols=14 Identities=36% Similarity=0.885 Sum_probs=11.6
Q ss_pred hhcc---ceecCCCCCC
Q 047170 44 ILHK---FVICGCCKSP 57 (89)
Q Consensus 44 ~L~~---yV~C~~C~sP 57 (89)
-|++ |-.|..|+.|
T Consensus 10 ple~~~~YRvC~~CgkP 26 (44)
T 2lo3_A 10 PLDKPIQYRVCEKCGKP 26 (44)
T ss_dssp CCCCCCCEEECTTTCCE
T ss_pred ccCccccchhhcccCCc
Confidence 4555 9999999987
No 18
>2if1_A EIF1, SUI1; translation initiation factor; NMR {Homo sapiens} SCOP: d.64.1.1
Probab=48.02 E-value=8.2 Score=25.93 Aligned_cols=39 Identities=8% Similarity=0.151 Sum_probs=29.9
Q ss_pred hHHHHHHHhhccceeecC----CceEEEEeecCHHHHHHhhcc
Q 047170 9 DVVTFLLSEMGTSGSLDG----QQHLVVKGRFASKYIEGILHK 47 (89)
Q Consensus 9 ~v~kyl~~ELgt~g~id~----~~rlii~G~~~~~~i~~~L~~ 47 (89)
.++|.|.+.+|+.|++-+ .+.+.|+|.+..+-.+-+.++
T Consensus 71 ~laK~LKkk~acgGtVk~~~e~g~~I~IQGD~r~~I~~~L~~~ 113 (126)
T 2if1_A 71 KLVKAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLVEI 113 (126)
T ss_dssp HHHTTHHHHTCCCEEEECCTTTSSEEEESBCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCeEEecCCCCccEEEEcCCHHHHHHHHHHHc
Confidence 488999999999999943 248999999987755544443
No 19
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=47.85 E-value=6.7 Score=23.63 Aligned_cols=31 Identities=23% Similarity=0.297 Sum_probs=18.1
Q ss_pred ceecCCCCCCceeEEEcCcEEEE----Eeecccce
Q 047170 48 FVICGCCKSPDTILTNGNHLFFL----IFPIKAGF 78 (89)
Q Consensus 48 yV~C~~C~sPdT~L~k~~rl~~l----v~~ik~g~ 78 (89)
...||.|++|=+-...++.+.-- ..||..|-
T Consensus 10 iL~CP~ck~~L~~~~~~g~LvC~~c~~~YPI~dGI 44 (67)
T 2jny_A 10 VLACPKDKGPLRYLESEQLLVNERLNLAYRIDDGI 44 (67)
T ss_dssp CCBCTTTCCBCEEETTTTEEEETTTTEEEEEETTE
T ss_pred HhCCCCCCCcCeEeCCCCEEEcCCCCccccCCCCE
Confidence 67899999963322222333221 77777774
No 20
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Probab=46.99 E-value=40 Score=19.96 Aligned_cols=34 Identities=15% Similarity=0.102 Sum_probs=27.1
Q ss_pred HHHHHHHhhccceeecCCce--------EEEEeecCHHHHHHhh
Q 047170 10 VVTFLLSEMGTSGSLDGQQH--------LVVKGRFASKYIEGIL 45 (89)
Q Consensus 10 v~kyl~~ELgt~g~id~~~r--------lii~G~~~~~~i~~~L 45 (89)
.++-|..|.|+.-.++.++. +.|.| +++.++...
T Consensus 35 ~Ik~I~~~tga~I~i~~~~~~~~~~er~v~I~G--~~~~v~~A~ 76 (85)
T 2opv_A 35 TIKQLQERAGVKMILIQDGSQNTNVDKPLRIIG--DPYKVQQAC 76 (85)
T ss_dssp HHHHHHHHHTCEEEECSSSCSSTTSCEEEEEEE--CHHHHHHHH
T ss_pred HHHHHHHHHCCEEEEcCCCCCCCCCceEEEEEe--CHHHHHHHH
Confidence 46789999999999987666 99999 777776553
No 21
>1ryq_A DNA-directed RNA polymerase, subunit E''; structural genomics, zinc, PSI, protein structure initiative; 1.38A {Pyrococcus furiosus} SCOP: g.41.9.3 PDB: 3qqc_E
Probab=44.57 E-value=8.8 Score=23.52 Aligned_cols=11 Identities=36% Similarity=0.631 Sum_probs=8.9
Q ss_pred ecCCCCCCcee
Q 047170 50 ICGCCKSPDTI 60 (89)
Q Consensus 50 ~C~~C~sPdT~ 60 (89)
.||.|++.+|.
T Consensus 25 ~CPnC~s~~tS 35 (69)
T 1ryq_A 25 RCPVCGSRDLS 35 (69)
T ss_dssp SCTTTCCCCEE
T ss_pred cCCCccCCccC
Confidence 59999998753
No 22
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=43.62 E-value=13 Score=26.76 Aligned_cols=21 Identities=19% Similarity=0.536 Sum_probs=16.0
Q ss_pred cCHHHHHHhhcc--ceecCCCCC
Q 047170 36 FASKYIEGILHK--FVICGCCKS 56 (89)
Q Consensus 36 ~~~~~i~~~L~~--yV~C~~C~s 56 (89)
.++..+..+... .|.||.|+.
T Consensus 208 lppq~~~~i~~~~~Iv~Cp~CgR 230 (256)
T 3na7_A 208 LNDKIYTEVLTSGDMITCPYCGR 230 (256)
T ss_dssp CCHHHHHHHHHSSSCEECTTTCC
T ss_pred eCHHHHHHHHCCCCEEECCCCCe
Confidence 467777776554 999999996
No 23
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=43.24 E-value=15 Score=19.94 Aligned_cols=12 Identities=25% Similarity=0.717 Sum_probs=8.4
Q ss_pred ceecCCCCCCce
Q 047170 48 FVICGCCKSPDT 59 (89)
Q Consensus 48 yV~C~~C~sPdT 59 (89)
.+.||.|++++-
T Consensus 5 ~~~CP~C~~~~l 16 (50)
T 1pft_A 5 QKVCPACESAEL 16 (50)
T ss_dssp CCSCTTTSCCCE
T ss_pred cEeCcCCCCcce
Confidence 356999988543
No 24
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=41.63 E-value=9.9 Score=22.85 Aligned_cols=31 Identities=32% Similarity=0.676 Sum_probs=17.7
Q ss_pred ceecCCCCCCceeEEEcCcEEEE----Eeecccce
Q 047170 48 FVICGCCKSPDTILTNGNHLFFL----IFPIKAGF 78 (89)
Q Consensus 48 yV~C~~C~sPdT~L~k~~rl~~l----v~~ik~g~ 78 (89)
...||.|++|=+.-..++.+.-- ..||..|-
T Consensus 8 iL~CP~ck~~L~~~~~~~~LiC~~cg~~YPI~dGI 42 (68)
T 2hf1_A 8 ILVCPLCKGPLVFDKSKDELICKGDRLAFPIKDGI 42 (68)
T ss_dssp ECBCTTTCCBCEEETTTTEEEETTTTEEEEEETTE
T ss_pred heECCCCCCcCeEeCCCCEEEcCCCCcEecCCCCe
Confidence 57899999863322112333221 77887775
No 25
>1qxf_A GR2, 30S ribosomal protein S27E; structural genomics, beta sheet, PSI, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: g.41.8.4
Probab=41.59 E-value=10 Score=23.09 Aligned_cols=17 Identities=24% Similarity=0.456 Sum_probs=13.5
Q ss_pred ceecCCCCCCceeEEEc
Q 047170 48 FVICGCCKSPDTILTNG 64 (89)
Q Consensus 48 yV~C~~C~sPdT~L~k~ 64 (89)
-|.||.|.+.-|.+-.-
T Consensus 7 ~VKCp~C~niq~VFShA 23 (66)
T 1qxf_A 7 KVKCPDCEHEQVIFDHP 23 (66)
T ss_dssp EEECTTTCCEEEEESSC
T ss_pred EEECCCCCCceEEEecC
Confidence 58999999988776543
No 26
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=40.96 E-value=10 Score=22.75 Aligned_cols=31 Identities=23% Similarity=0.458 Sum_probs=17.7
Q ss_pred ceecCCCCCCceeEEEcCcEEEE----Eeecccce
Q 047170 48 FVICGCCKSPDTILTNGNHLFFL----IFPIKAGF 78 (89)
Q Consensus 48 yV~C~~C~sPdT~L~k~~rl~~l----v~~ik~g~ 78 (89)
...||.|++|=+.-..++.+.-- ..||..|-
T Consensus 8 iL~CP~ck~~L~~~~~~~~LiC~~cg~~YPI~dGI 42 (68)
T 2jr6_A 8 ILVCPVTKGRLEYHQDKQELWSRQAKLAYPIKDGI 42 (68)
T ss_dssp CCBCSSSCCBCEEETTTTEEEETTTTEEEEEETTE
T ss_pred heECCCCCCcCeEeCCCCEEEcCCCCcEecCCCCe
Confidence 57899999863322112332221 77887775
No 27
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=40.54 E-value=11 Score=28.52 Aligned_cols=16 Identities=19% Similarity=0.413 Sum_probs=11.2
Q ss_pred ceecCCCCCCceeEEE
Q 047170 48 FVICGCCKSPDTILTN 63 (89)
Q Consensus 48 yV~C~~C~sPdT~L~k 63 (89)
-..||+|+++.|.|+.
T Consensus 21 ~~~Cp~C~~~~~~lv~ 36 (345)
T 4bbr_M 21 VLTCPECKVYPPKIVE 36 (345)
T ss_dssp -CCCSSCCCSSCCEEE
T ss_pred CCcCCCCCCCCCceeE
Confidence 4479999995566654
No 28
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=39.73 E-value=9.9 Score=22.98 Aligned_cols=30 Identities=23% Similarity=0.613 Sum_probs=17.5
Q ss_pred ceecCCCCCCceeEEEc-CcEEEE----Eeecccce
Q 047170 48 FVICGCCKSPDTILTNG-NHLFFL----IFPIKAGF 78 (89)
Q Consensus 48 yV~C~~C~sPdT~L~k~-~rl~~l----v~~ik~g~ 78 (89)
...||.|++|=+ +..+ +.+.-- ..||..|-
T Consensus 8 iL~CP~ck~~L~-~~~~~~~LiC~~cg~~YPI~dGI 42 (70)
T 2js4_A 8 ILVCPVCKGRLE-FQRAQAELVCNADRLAFPVRDGV 42 (70)
T ss_dssp CCBCTTTCCBEE-EETTTTEEEETTTTEEEEEETTE
T ss_pred heECCCCCCcCE-EeCCCCEEEcCCCCceecCCCCe
Confidence 678999999622 2222 232221 77887775
No 29
>3vhs_A ATPase wrnip1; zinc finger, ubiquitin-binding domain, ubiquitin binding, ME binding protein; 1.90A {Homo sapiens}
Probab=38.94 E-value=11 Score=19.35 Aligned_cols=9 Identities=33% Similarity=0.814 Sum_probs=7.5
Q ss_pred ceecCCCCC
Q 047170 48 FVICGCCKS 56 (89)
Q Consensus 48 yV~C~~C~s 56 (89)
-|+||.|..
T Consensus 6 ~vqcpvcqq 14 (29)
T 3vhs_A 6 QVQCPVCQQ 14 (29)
T ss_dssp EEECTTTCC
T ss_pred eeeChHHHH
Confidence 489999975
No 30
>1lv3_A Hypothetical protein YACG; zinc finger, rubredoxin knuckle, C4 tetrahedral Zn+2, antiparallel beta strand and alpha helix, NESG project; NMR {Escherichia coli} SCOP: g.39.1.9
Probab=38.16 E-value=10 Score=23.17 Aligned_cols=12 Identities=25% Similarity=0.432 Sum_probs=9.8
Q ss_pred ceecCCCCCCce
Q 047170 48 FVICGCCKSPDT 59 (89)
Q Consensus 48 yV~C~~C~sPdT 59 (89)
-|.||.|+.|-+
T Consensus 9 ~~~CP~Cgkp~~ 20 (68)
T 1lv3_A 9 TVNCPTCGKTVV 20 (68)
T ss_dssp EEECTTTCCEEE
T ss_pred cCcCCCCCCccc
Confidence 689999998743
No 31
>3mhs_E SAGA-associated factor 73; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_E 4fip_D 4fjc_D 4fk5_E 3m99_D
Probab=37.72 E-value=5.9 Score=25.86 Aligned_cols=15 Identities=33% Similarity=0.829 Sum_probs=11.8
Q ss_pred Hhhcc---ceecCCCCCC
Q 047170 43 GILHK---FVICGCCKSP 57 (89)
Q Consensus 43 ~~L~~---yV~C~~C~sP 57 (89)
+-|+. |-.|..|+.|
T Consensus 67 ~~Ld~~~~YRvCn~CGkP 84 (96)
T 3mhs_E 67 DPLDKPIQYRVCEKCGKP 84 (96)
T ss_dssp STTSSSCCCEEETTTCCE
T ss_pred ccCCCcccchhhhccCCc
Confidence 34454 9999999987
No 32
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=36.55 E-value=9.9 Score=22.91 Aligned_cols=30 Identities=23% Similarity=0.647 Sum_probs=17.3
Q ss_pred ceecCCCCCCceeEEEcCcEEEE-----Eeecccce
Q 047170 48 FVICGCCKSPDTILTNGNHLFFL-----IFPIKAGF 78 (89)
Q Consensus 48 yV~C~~C~sPdT~L~k~~rl~~l-----v~~ik~g~ 78 (89)
...||.|++|=+. ..++.-.+- ..||..|-
T Consensus 8 iL~CP~ck~~L~~-~~~~~~LiC~~cg~~YPI~dGI 42 (69)
T 2pk7_A 8 ILACPICKGPLKL-SADKTELISKGAGLAYPIRDGI 42 (69)
T ss_dssp TCCCTTTCCCCEE-CTTSSEEEETTTTEEEEEETTE
T ss_pred heeCCCCCCcCeE-eCCCCEEEcCCCCcEecCcCCe
Confidence 5789999986332 122222222 77787775
No 33
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=35.16 E-value=15 Score=20.60 Aligned_cols=15 Identities=13% Similarity=0.282 Sum_probs=11.7
Q ss_pred ceecCCCCCCceeEE
Q 047170 48 FVICGCCKSPDTILT 62 (89)
Q Consensus 48 yV~C~~C~sPdT~L~ 62 (89)
.+.||.|+..+....
T Consensus 15 ~~~Cp~Cg~~~~~~~ 29 (57)
T 1qyp_A 15 KITCPKCGNDTAYWW 29 (57)
T ss_dssp ECCCTTTCCSEEEEE
T ss_pred EeECCCCCCCEEEEE
Confidence 789999999665544
No 34
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=34.98 E-value=12 Score=25.83 Aligned_cols=27 Identities=22% Similarity=0.335 Sum_probs=9.7
Q ss_pred EeecCHHHHHHhhccceecCCCCCCce
Q 047170 33 KGRFASKYIEGILHKFVICGCCKSPDT 59 (89)
Q Consensus 33 ~G~~~~~~i~~~L~~yV~C~~C~sPdT 59 (89)
.|++.......++...--||.|.|.-|
T Consensus 12 ~~~~~~~~~g~~M~~lP~CP~C~seyt 38 (138)
T 2akl_A 12 SGRENLYFQGHMVSTLPPCPQCNSEYT 38 (138)
T ss_dssp -----------CCCCSCCCTTTCCCCC
T ss_pred cccccccccccccccCCCCCCCCCcce
Confidence 355555555555544566777766554
No 35
>3j20_W 30S ribosomal protein S27E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=34.64 E-value=16 Score=22.05 Aligned_cols=16 Identities=19% Similarity=0.434 Sum_probs=13.0
Q ss_pred ceecCCCCCCceeEEE
Q 047170 48 FVICGCCKSPDTILTN 63 (89)
Q Consensus 48 yV~C~~C~sPdT~L~k 63 (89)
-|.||.|.+..|.+-.
T Consensus 15 ~VkCp~C~~~q~VFSh 30 (63)
T 3j20_W 15 RVKCIDCGNEQIVFSH 30 (63)
T ss_dssp EEECSSSCCEEEEESS
T ss_pred EEECCCCCCeeEEEec
Confidence 6999999998777654
No 36
>1tfi_A Transcriptional elongation factor SII; transcription regulation; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=34.19 E-value=17 Score=20.39 Aligned_cols=16 Identities=31% Similarity=0.735 Sum_probs=12.6
Q ss_pred ceecCCCCCCceeEEE
Q 047170 48 FVICGCCKSPDTILTN 63 (89)
Q Consensus 48 yV~C~~C~sPdT~L~k 63 (89)
-+.||.|++.+..+..
T Consensus 9 ~~~Cp~Cg~~~a~f~q 24 (50)
T 1tfi_A 9 LFTCGKCKKKNCTYTQ 24 (50)
T ss_dssp CSCCSSSCSSCEEEEE
T ss_pred ccCCCCCCCCEEEEEE
Confidence 4689999998876653
No 37
>2e2z_A TIM15; protein import, zinc finger, protein transport, chaperone regulator; NMR {Saccharomyces cerevisiae}
Probab=33.79 E-value=14 Score=24.09 Aligned_cols=10 Identities=30% Similarity=0.823 Sum_probs=9.0
Q ss_pred ceecCCCCCC
Q 047170 48 FVICGCCKSP 57 (89)
Q Consensus 48 yV~C~~C~sP 57 (89)
+|.||.|.+.
T Consensus 38 iv~C~gC~n~ 47 (100)
T 2e2z_A 38 LISCPHCKVR 47 (100)
T ss_dssp EEECTTTCCE
T ss_pred EEEcCCCccc
Confidence 9999999983
No 38
>1brv_A Protein G, BRSV-G region; attachment protein G of bovine respiratory syncytial virus, immunoglobulin-binding protein; NMR {Bovine respiratory syncytial virus} SCOP: j.33.1.1
Probab=33.64 E-value=11 Score=19.98 Aligned_cols=10 Identities=30% Similarity=0.983 Sum_probs=8.8
Q ss_pred ceecCCCCCC
Q 047170 48 FVICGCCKSP 57 (89)
Q Consensus 48 yV~C~~C~sP 57 (89)
||-|+.|++-
T Consensus 13 ~VPCsiC~~N 22 (32)
T 1brv_A 13 YVPCSTCEGN 22 (32)
T ss_pred cccccccCCC
Confidence 9999999863
No 39
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae}
Probab=33.63 E-value=17 Score=26.45 Aligned_cols=16 Identities=19% Similarity=0.413 Sum_probs=12.3
Q ss_pred ceecCCCCCCceeEEE
Q 047170 48 FVICGCCKSPDTILTN 63 (89)
Q Consensus 48 yV~C~~C~sPdT~L~k 63 (89)
-..||+|++..+.|+.
T Consensus 21 ~~~CPECGs~~t~IV~ 36 (197)
T 3k1f_M 21 VLTCPECKVYPPKIVE 36 (197)
T ss_dssp CCCCTTTCCSSCCEEE
T ss_pred CeECcCCCCcCCeEEE
Confidence 4579999996676765
No 40
>3p8b_A DNA-directed RNA polymerase, subunit E''; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus}
Probab=31.46 E-value=19 Score=22.73 Aligned_cols=10 Identities=40% Similarity=0.753 Sum_probs=8.6
Q ss_pred ecCCCCCCce
Q 047170 50 ICGCCKSPDT 59 (89)
Q Consensus 50 ~C~~C~sPdT 59 (89)
.||.|++.+|
T Consensus 37 ~CPnCgs~~~ 46 (81)
T 3p8b_A 37 RCPVCGSRDL 46 (81)
T ss_dssp SCTTTCCCCE
T ss_pred CCCCCCCCcc
Confidence 5999999875
No 41
>2xzm_6 RPS27E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_6
Probab=31.30 E-value=19 Score=22.72 Aligned_cols=16 Identities=31% Similarity=0.611 Sum_probs=13.2
Q ss_pred ceecCCCCCCceeEEE
Q 047170 48 FVICGCCKSPDTILTN 63 (89)
Q Consensus 48 yV~C~~C~sPdT~L~k 63 (89)
-|.||.|.+.-|.+-.
T Consensus 32 ~VkCp~C~n~q~VFSh 47 (81)
T 2xzm_6 32 DVKCAQCQNIQMIFSN 47 (81)
T ss_dssp EEECSSSCCEEEEETT
T ss_pred EeECCCCCCeeEEEec
Confidence 6899999998777654
No 42
>3u5c_b RP61, YS20, 40S ribosomal protein S27-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_X 3u5g_b
Probab=30.25 E-value=23 Score=22.37 Aligned_cols=16 Identities=25% Similarity=0.474 Sum_probs=13.6
Q ss_pred ceecCCCCCCceeEEE
Q 047170 48 FVICGCCKSPDTILTN 63 (89)
Q Consensus 48 yV~C~~C~sPdT~L~k 63 (89)
-|.||.|.+.-|.+-.
T Consensus 34 ~VkCp~C~~~q~VFSh 49 (82)
T 3u5c_b 34 DVKCPGCLNITTVFSH 49 (82)
T ss_dssp EEECTTSCSCEEEESB
T ss_pred EEECCCCCCeeEEEec
Confidence 7999999998887764
No 43
>3r8s_0 50S ribosomal protein L32; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_Z 1p86_Z 2awb_0 2aw4_0 2i2v_0 2j28_0 2i2t_0* 2qao_0* 2qba_0* 2qbc_0* 2qbe_0 2qbg_0 2qbi_0* 2qbk_0* 2qov_0 2qox_0 2qoz_0* 2qp1_0* 2rdo_0 2vhm_0 ...
Probab=30.03 E-value=17 Score=21.04 Aligned_cols=10 Identities=0% Similarity=-0.067 Sum_probs=8.8
Q ss_pred ceecCCCCCC
Q 047170 48 FVICGCCKSP 57 (89)
Q Consensus 48 yV~C~~C~sP 57 (89)
.|.||.|+.+
T Consensus 27 l~~c~~cGe~ 36 (56)
T 3r8s_0 27 LSVDKTSGEK 36 (56)
T ss_dssp EEECTTTCCE
T ss_pred eeECCCCCCe
Confidence 8999999973
No 44
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=29.90 E-value=45 Score=18.65 Aligned_cols=11 Identities=18% Similarity=0.311 Sum_probs=9.3
Q ss_pred ceecCCCCCCc
Q 047170 48 FVICGCCKSPD 58 (89)
Q Consensus 48 yV~C~~C~sPd 58 (89)
+-.||.|+++-
T Consensus 19 ~k~CP~CG~~~ 29 (50)
T 3j20_Y 19 NKFCPRCGPGV 29 (50)
T ss_dssp SEECSSSCSSC
T ss_pred cccCCCCCCce
Confidence 77899999964
No 45
>3mcb_B Transcription factor BTF3; beta-barrel like structure, NAC, heterodimer, chaperone; 1.90A {Homo sapiens}
Probab=29.47 E-value=10 Score=22.38 Aligned_cols=26 Identities=19% Similarity=0.359 Sum_probs=20.7
Q ss_pred cceeecCCceEEEEeecCHHHHHHhhc
Q 047170 20 TSGSLDGQQHLVVKGRFASKYIEGILH 46 (89)
Q Consensus 20 t~g~id~~~rlii~G~~~~~~i~~~L~ 46 (89)
+++++..+ .++|.|....++|+++|-
T Consensus 27 VqaS~~aN-Tfvv~G~~e~K~l~e~lP 52 (58)
T 3mcb_B 27 VQASLAAN-TFTITGHAETKQLTEMLP 52 (58)
T ss_dssp EEEETTTT-EEEEESCEEEEEGGGGTT
T ss_pred eEEeeccc-eEEEecCCeeeEHHHHCh
Confidence 45666645 999999999999998864
No 46
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=29.46 E-value=18 Score=20.78 Aligned_cols=10 Identities=20% Similarity=0.202 Sum_probs=8.3
Q ss_pred eecCCCCCCc
Q 047170 49 VICGCCKSPD 58 (89)
Q Consensus 49 V~C~~C~sPd 58 (89)
..||.|++.+
T Consensus 12 ~~Cp~C~~~~ 21 (58)
T 1dl6_A 12 VTCPNHPDAI 21 (58)
T ss_dssp CSBTTBSSSC
T ss_pred ccCcCCCCCc
Confidence 4799999966
No 47
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=28.35 E-value=21 Score=24.72 Aligned_cols=14 Identities=21% Similarity=0.702 Sum_probs=11.1
Q ss_pred ecCCCCCCceeEEE
Q 047170 50 ICGCCKSPDTILTN 63 (89)
Q Consensus 50 ~C~~C~sPdT~L~k 63 (89)
.||.|+.|-..+.+
T Consensus 173 ~CP~C~~~k~~f~~ 186 (191)
T 1lko_A 173 LCPACAHPKAHFEL 186 (191)
T ss_dssp BCTTTCCBGGGEEE
T ss_pred CCCCCcCCHHHHHh
Confidence 79999998776654
No 48
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=27.92 E-value=18 Score=23.79 Aligned_cols=13 Identities=31% Similarity=0.202 Sum_probs=10.0
Q ss_pred ceecCCCCCCcee
Q 047170 48 FVICGCCKSPDTI 60 (89)
Q Consensus 48 yV~C~~C~sPdT~ 60 (89)
=+.||.|+|.+..
T Consensus 84 PsrCP~CkSe~Ie 96 (105)
T 2gmg_A 84 PSRCPKCKSEWIE 96 (105)
T ss_dssp CSSCSSSCCCCBC
T ss_pred CCCCcCCCCCccC
Confidence 4789999997653
No 49
>3iz6_X 40S ribosomal protein S27 (S27E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=27.78 E-value=23 Score=22.54 Aligned_cols=16 Identities=25% Similarity=0.461 Sum_probs=12.6
Q ss_pred ceecCCCCCCceeEEE
Q 047170 48 FVICGCCKSPDTILTN 63 (89)
Q Consensus 48 yV~C~~C~sPdT~L~k 63 (89)
-|.||.|.+.-|.+-.
T Consensus 36 ~VkCp~C~~~~~VFSh 51 (86)
T 3iz6_X 36 DVKCQGCFNITTVFSH 51 (86)
T ss_dssp EEECTTTCCEEEEETT
T ss_pred EEECCCCCCeeEEEec
Confidence 4999999997776543
No 50
>4ay7_A Methylcobalamin\: coenzyme M methyltransferase; TIM barrel; 1.80A {Methanosarcina mazei} PDB: 4ay8_A
Probab=27.62 E-value=14 Score=27.17 Aligned_cols=47 Identities=17% Similarity=0.202 Sum_probs=28.2
Q ss_pred HHHhhccceeecCCceEEEEeecC--HHHHHHhhcc--ceecCCCCC-CceeE
Q 047170 14 LLSEMGTSGSLDGQQHLVVKGRFA--SKYIEGILHK--FVICGCCKS-PDTIL 61 (89)
Q Consensus 14 l~~ELgt~g~id~~~rlii~G~~~--~~~i~~~L~~--yV~C~~C~s-PdT~L 61 (89)
++..+..+|++|.. .+.+.|.-+ .+.+.++|++ |++-+.|+- |||..
T Consensus 282 ~g~~~~l~Gnldp~-~~l~~g~~e~i~~~v~~~l~~~g~I~~~Ghgi~p~tp~ 333 (348)
T 4ay7_A 282 IGTRARLVGNVSSP-FTLLPGPVDKIKAEAKEALEGGIDVLAPGCGIAPMTPL 333 (348)
T ss_dssp HTTSSEEEEEECCC-CCCTTCCHHHHHHHHHHHHHTTCSEEEESSSCCTTCCH
T ss_pred hCCCEEEEcCCCCh-HhhcCCCHHHHHHHHHHHHhCCCCEEeCCCccCCCCCH
Confidence 44445567777753 344445321 2344555655 999999994 78764
No 51
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1
Probab=27.53 E-value=73 Score=19.23 Aligned_cols=34 Identities=12% Similarity=0.105 Sum_probs=24.9
Q ss_pred HHHHHHHhhccceeecCCce--------EEEEeecCHHHHHHhh
Q 047170 10 VVTFLLSEMGTSGSLDGQQH--------LVVKGRFASKYIEGIL 45 (89)
Q Consensus 10 v~kyl~~ELgt~g~id~~~r--------lii~G~~~~~~i~~~L 45 (89)
.++.|..|.|+.-.++.++. +.|.| +++.++...
T Consensus 36 ~Ik~I~~~tga~I~I~~~~~~~~~~~r~v~I~G--~~~~v~~A~ 77 (94)
T 1x4m_A 36 TIKQLQERAGVKMVMIQDGPQNTGADKPLRITG--DPYKVQQAK 77 (94)
T ss_dssp HHHHHHHHHTSEEEECCSCCCSSCSCEEEEEEE--CTTTHHHHH
T ss_pred HHHHHHHHHCCeEEecCCCCCCCCCceEEEEEe--CHHHHHHHH
Confidence 46789999999999976544 88899 555555443
No 52
>3lkx_A Transcription factor BTF3; beta-barrel, chaperone; 2.50A {Homo sapiens}
Probab=25.84 E-value=13 Score=22.39 Aligned_cols=27 Identities=19% Similarity=0.347 Sum_probs=20.8
Q ss_pred cceeecCCceEEEEeecCHHHHHHhhcc
Q 047170 20 TSGSLDGQQHLVVKGRFASKYIEGILHK 47 (89)
Q Consensus 20 t~g~id~~~rlii~G~~~~~~i~~~L~~ 47 (89)
+++++..+ .++|.|....++|+++|-.
T Consensus 27 VqaS~~aN-T~vv~G~~e~K~l~ellP~ 53 (66)
T 3lkx_A 27 VQASLAAN-TFTITGHAETKQLTEMLPS 53 (66)
T ss_dssp EEEECC-C-EEEEESCEEEEEGGGGTTG
T ss_pred eEEeeccC-eeEecCCCEEeEHHHHChh
Confidence 45666645 9999999999999988643
No 53
>3noy_A 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; iron-sulfur protein, non-mevalonate pathway, terpene biosynt isoprenoid biosynthesis; 2.70A {Aquifex aeolicus}
Probab=25.83 E-value=27 Score=27.46 Aligned_cols=15 Identities=27% Similarity=0.525 Sum_probs=12.1
Q ss_pred ceecCCCCCCceeEE
Q 047170 48 FVICGCCKSPDTILT 62 (89)
Q Consensus 48 yV~C~~C~sPdT~L~ 62 (89)
||-||+|+.-.-.++
T Consensus 271 ~ISCPtCGRt~~dl~ 285 (366)
T 3noy_A 271 IVACPTCGRIEVDLP 285 (366)
T ss_dssp EEECCCCTTCCSCHH
T ss_pred EEECCCCCCccccHH
Confidence 999999998665554
No 54
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=25.72 E-value=41 Score=25.34 Aligned_cols=16 Identities=25% Similarity=0.538 Sum_probs=11.8
Q ss_pred ceecCCCCC-CceeEEE
Q 047170 48 FVICGCCKS-PDTILTN 63 (89)
Q Consensus 48 yV~C~~C~s-PdT~L~k 63 (89)
.-.||.|+| |...+++
T Consensus 182 ~~~CPvCGs~P~~s~l~ 198 (309)
T 2fiy_A 182 RTLCPACGSPPMAGMIR 198 (309)
T ss_dssp CSSCTTTCCCEEEEEEE
T ss_pred CCCCCCCCCcCceeEEe
Confidence 578999999 5455555
No 55
>3v2d_5 50S ribosomal protein L32; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_4 2hgj_4 2hgu_4 2j03_5 2jl6_5 2jl8_5 2v47_5 2v49_5 2wdi_5 2wdj_5 2wdl_5 2wdn_5 2wh2_5 2wh4_5 2wrj_5 2wrl_5 2wro_5 2wrr_5 2x9s_5 2x9u_5 ...
Probab=25.70 E-value=22 Score=20.84 Aligned_cols=10 Identities=40% Similarity=0.770 Sum_probs=8.7
Q ss_pred ceecCCCCCC
Q 047170 48 FVICGCCKSP 57 (89)
Q Consensus 48 yV~C~~C~sP 57 (89)
.|.||.|+.+
T Consensus 30 l~~c~~cGe~ 39 (60)
T 3v2d_5 30 LVPCPECKAM 39 (60)
T ss_dssp CEECTTTCCE
T ss_pred eeECCCCCCe
Confidence 8999999973
No 56
>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A
Probab=25.51 E-value=10 Score=24.72 Aligned_cols=14 Identities=14% Similarity=0.216 Sum_probs=10.2
Q ss_pred eecCCCCCCceeEE
Q 047170 49 VICGCCKSPDTILT 62 (89)
Q Consensus 49 V~C~~C~sPdT~L~ 62 (89)
.+|+.|++|-|.++
T Consensus 170 ~~c~~c~~~~~~~~ 183 (184)
T 1pvm_A 170 IKVFRCSNPACDYE 183 (184)
T ss_dssp EEEEEESCTTCCCB
T ss_pred EEccccCCcccCcC
Confidence 46888888877653
No 57
>3irb_A Uncharacterized protein from DUF35 family; 13815350, protein with unknown function from DUF35 family, S genomics; 1.80A {Sulfolobus solfataricus}
Probab=25.04 E-value=23 Score=23.62 Aligned_cols=16 Identities=13% Similarity=0.113 Sum_probs=12.5
Q ss_pred ceecCCCCCCceeEEE
Q 047170 48 FVICGCCKSPDTILTN 63 (89)
Q Consensus 48 yV~C~~C~sPdT~L~k 63 (89)
-..||.|+|++..-+.
T Consensus 61 r~~Cp~C~s~~~~~ve 76 (145)
T 3irb_A 61 RSYCEHCFVKIENYVE 76 (145)
T ss_dssp CSEETTTTEECCEEEE
T ss_pred hhhCcCCCCCceeeee
Confidence 3569999999987653
No 58
>2kq9_A DNAK suppressor protein; zinc binding protein, structural genomics, PSI-2, protein ST initiative; NMR {Agrobacterium tumefaciens str}
Probab=24.49 E-value=20 Score=22.98 Aligned_cols=19 Identities=26% Similarity=0.543 Sum_probs=13.8
Q ss_pred HHHHHhhcc-----ceecCCCCCC
Q 047170 39 KYIEGILHK-----FVICGCCKSP 57 (89)
Q Consensus 39 ~~i~~~L~~-----yV~C~~C~sP 57 (89)
.+|+..|.+ |-.|-.|+.|
T Consensus 67 ~~i~~Al~ri~~g~yg~C~~Cg~~ 90 (112)
T 2kq9_A 67 RAIDAALARIASGTFGTCVKCGKR 90 (112)
T ss_dssp HHHHHHHHHHHHTCCSEETTTTEE
T ss_pred HHHHHHHHhhhCCCcCeeCCCCCc
Confidence 345555555 9999999964
No 59
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=23.59 E-value=54 Score=20.33 Aligned_cols=13 Identities=15% Similarity=0.526 Sum_probs=9.8
Q ss_pred ecCCCCCCceeEE
Q 047170 50 ICGCCKSPDTILT 62 (89)
Q Consensus 50 ~C~~C~sPdT~L~ 62 (89)
.||.|++......
T Consensus 4 ~Cp~Cg~~~~~~~ 16 (133)
T 3o9x_A 4 KCPVCHQGEMVSG 16 (133)
T ss_dssp BCTTTSSSBEEEE
T ss_pred CCCcCCCCceeec
Confidence 6999998865443
No 60
>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 3pio_Z* 3pip_Z* 1nwy_Z* 1nwx_Z* ...
Probab=23.06 E-value=27 Score=20.44 Aligned_cols=10 Identities=20% Similarity=0.624 Sum_probs=8.9
Q ss_pred ceecCCCCCC
Q 047170 48 FVICGCCKSP 57 (89)
Q Consensus 48 yV~C~~C~sP 57 (89)
.|.||.|+.+
T Consensus 30 l~~c~~cG~~ 39 (60)
T 2zjr_Z 30 LTECPQCHGK 39 (60)
T ss_dssp CEECTTTCCE
T ss_pred ceECCCCCCE
Confidence 8999999975
No 61
>3cg7_A CRN-4, cell death-related nuclease 4; hydrolase, apoptosis, 3'-5' exonuclease, deddh; 2.50A {Caenorhabditis elegans} PDB: 3cm5_A 3cm6_A
Probab=22.89 E-value=23 Score=26.05 Aligned_cols=12 Identities=17% Similarity=0.683 Sum_probs=11.0
Q ss_pred ceecCCCCCCce
Q 047170 48 FVICGCCKSPDT 59 (89)
Q Consensus 48 yV~C~~C~sPdT 59 (89)
|..|+.|+.|++
T Consensus 267 ~~~~~~c~~~~~ 278 (308)
T 3cg7_A 267 YGVCRYCRKGMD 278 (308)
T ss_dssp TTBCTTTCCBTT
T ss_pred cccCCcCCCccc
Confidence 999999999974
No 62
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=22.84 E-value=36 Score=18.94 Aligned_cols=14 Identities=14% Similarity=0.432 Sum_probs=10.3
Q ss_pred eecCCCCCCceeEE
Q 047170 49 VICGCCKSPDTILT 62 (89)
Q Consensus 49 V~C~~C~sPdT~L~ 62 (89)
-.||.|+.+-..++
T Consensus 31 w~CP~Cg~~k~~F~ 44 (46)
T 6rxn_A 31 WCCPVCGVSKDQFS 44 (46)
T ss_dssp CBCTTTCCBGGGEE
T ss_pred CcCcCCCCcHHHcE
Confidence 36999998865554
No 63
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=22.76 E-value=19 Score=26.93 Aligned_cols=16 Identities=19% Similarity=0.413 Sum_probs=11.6
Q ss_pred ceecCCCCCCceeEEE
Q 047170 48 FVICGCCKSPDTILTN 63 (89)
Q Consensus 48 yV~C~~C~sPdT~L~k 63 (89)
-..||.|+++.+.++.
T Consensus 21 ~~~Cp~Cg~~~~~iv~ 36 (345)
T 3k7a_M 21 VLTCPECKVYPPKIVE 36 (345)
T ss_dssp CCCCSTTCCSCCCCCC
T ss_pred CCcCcCCCCCCCceEE
Confidence 4579999997555554
No 64
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=22.28 E-value=39 Score=17.10 Aligned_cols=8 Identities=25% Similarity=0.717 Sum_probs=6.7
Q ss_pred eecCCCCC
Q 047170 49 VICGCCKS 56 (89)
Q Consensus 49 V~C~~C~s 56 (89)
..||.|+.
T Consensus 4 ~~CpvCk~ 11 (28)
T 2jvx_A 4 FCCPKCQY 11 (28)
T ss_dssp EECTTSSC
T ss_pred ccCccccc
Confidence 57999996
No 65
>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A
Probab=22.23 E-value=55 Score=18.96 Aligned_cols=24 Identities=17% Similarity=0.331 Sum_probs=18.2
Q ss_pred ecCCceEE-EEeecCHHHHHHhhcc
Q 047170 24 LDGQQHLV-VKGRFASKYIEGILHK 47 (89)
Q Consensus 24 id~~~rli-i~G~~~~~~i~~~L~~ 47 (89)
+|.+|+++ ..|..+.+.|++.|++
T Consensus 108 id~~g~i~~~~g~~~~~~l~~~l~~ 132 (136)
T 1zzo_A 108 VDPHGNVDVVRGRMSQDELTRRVTA 132 (136)
T ss_dssp ECTTCCEEEEESCCCHHHHHHHHHH
T ss_pred ECCCCCEEEEecCCCHHHHHHHHHH
Confidence 37777775 7788899888888764
No 66
>3lpe_B DNA-directed RNA polymerase subunit E''; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} SCOP: g.41.9.0
Probab=21.98 E-value=28 Score=20.44 Aligned_cols=8 Identities=63% Similarity=1.443 Sum_probs=6.8
Q ss_pred ecCCCCCC
Q 047170 50 ICGCCKSP 57 (89)
Q Consensus 50 ~C~~C~sP 57 (89)
-||.|++.
T Consensus 15 ~CpnC~~~ 22 (59)
T 3lpe_B 15 ICPICHSP 22 (59)
T ss_dssp BCTTTCCB
T ss_pred CCCCCCCC
Confidence 59999984
No 67
>3q87_A Putative uncharacterized protein ECU08_1170; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}
Probab=21.66 E-value=60 Score=21.70 Aligned_cols=9 Identities=22% Similarity=0.578 Sum_probs=8.1
Q ss_pred ceecCCCCC
Q 047170 48 FVICGCCKS 56 (89)
Q Consensus 48 yV~C~~C~s 56 (89)
...||+|+.
T Consensus 99 ~L~Cp~cgr 107 (125)
T 3q87_A 99 SLRCDMCGL 107 (125)
T ss_dssp EEEETTTCC
T ss_pred EEECCCCCC
Confidence 889999996
No 68
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=21.56 E-value=39 Score=19.10 Aligned_cols=15 Identities=20% Similarity=0.656 Sum_probs=11.4
Q ss_pred eecCCCCCCceeEEE
Q 047170 49 VICGCCKSPDTILTN 63 (89)
Q Consensus 49 V~C~~C~sPdT~L~k 63 (89)
-.||.|+.+-..+++
T Consensus 36 w~CP~Cg~~K~~F~~ 50 (52)
T 1yk4_A 36 WVCPLCGAPKSEFER 50 (52)
T ss_dssp CBCTTTCCBGGGEEE
T ss_pred CcCCCCCCCHHHcEE
Confidence 369999998776654
No 69
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=21.48 E-value=44 Score=19.08 Aligned_cols=19 Identities=21% Similarity=0.329 Sum_probs=13.5
Q ss_pred HHHHHhhccceecCCCCCC
Q 047170 39 KYIEGILHKFVICGCCKSP 57 (89)
Q Consensus 39 ~~i~~~L~~yV~C~~C~sP 57 (89)
++||+.+...-+|+.|++.
T Consensus 5 ~eie~r~~~k~iCpkC~a~ 23 (51)
T 3j21_g 5 PEAEARIFKKYVCLRCGAT 23 (51)
T ss_dssp TTHHHHSSSEEECTTTCCE
T ss_pred HHHHHHHhCCccCCCCCCc
Confidence 3566666666779999874
No 70
>2oik_A Histidine triad (HIT) protein; HIT-like fold, structural genomics, joint center for structu genomics, JCSG; HET: MSE; 1.65A {Methylobacillus flagellatus} SCOP: d.13.1.1
Probab=21.39 E-value=23 Score=23.11 Aligned_cols=36 Identities=17% Similarity=0.198 Sum_probs=24.7
Q ss_pred cCCCCCCceeEEEcCcEEEE---EeecccceEEEeeecc
Q 047170 51 CGCCKSPDTILTNGNHLFFL---IFPIKAGFVARFGRRN 86 (89)
Q Consensus 51 C~~C~sPdT~L~k~~rl~~l---v~~ik~g~~a~~~kr~ 86 (89)
|.-|+..++.++-++..++. ..|.-.|..-++-||-
T Consensus 12 C~FC~~~~~~iv~e~~~~~a~~d~~p~~pgh~LViPk~H 50 (154)
T 2oik_A 12 CELCTTAGGEILWQDALCRVVHVENQDYPGFCRVILNRH 50 (154)
T ss_dssp CHHHHSCCSEEEEECSSEEEEECCCTTCTTCEEEEESSC
T ss_pred CccCCCCCCeEEEECCcEEEEEcCCCCCCeEEEEEecCC
Confidence 78888766677766654444 6777788877776653
No 71
>1tjl_A DNAK suppressor protein; DKSA, transcription factor, RNA polymerase, stringent response, PPGPP, riken structural genomics/proteomics initiative; 2.00A {Escherichia coli} SCOP: a.2.14.1 g.39.1.13 PDB: 3h3p_S
Probab=20.69 E-value=37 Score=23.07 Aligned_cols=10 Identities=30% Similarity=0.756 Sum_probs=9.1
Q ss_pred ceecCCCCCC
Q 047170 48 FVICGCCKSP 57 (89)
Q Consensus 48 yV~C~~C~sP 57 (89)
|-.|-.|+.|
T Consensus 111 yg~C~~Cg~~ 120 (151)
T 1tjl_A 111 FGYCESCGVE 120 (151)
T ss_dssp CSBCSSSSCB
T ss_pred CceeCCCCCc
Confidence 9999999975
No 72
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=20.63 E-value=41 Score=19.24 Aligned_cols=14 Identities=14% Similarity=0.321 Sum_probs=11.6
Q ss_pred ecCCCCCCceeEEE
Q 047170 50 ICGCCKSPDTILTN 63 (89)
Q Consensus 50 ~C~~C~sPdT~L~k 63 (89)
.||.|+.+-..+++
T Consensus 38 ~CP~Cga~K~~F~~ 51 (55)
T 2v3b_B 38 VCPDCGVGKIDFEM 51 (55)
T ss_dssp CCTTTCCCGGGEEE
T ss_pred cCCCCCCCHHHcee
Confidence 69999998877765
No 73
>3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix}
Probab=20.60 E-value=71 Score=19.67 Aligned_cols=24 Identities=13% Similarity=0.319 Sum_probs=19.7
Q ss_pred ecCCceEEEEeec-CHHHHHHhhcc
Q 047170 24 LDGQQHLVVKGRF-ASKYIEGILHK 47 (89)
Q Consensus 24 id~~~rlii~G~~-~~~~i~~~L~~ 47 (89)
+|.+|+++..|.. +.+.|++.|++
T Consensus 137 id~~G~i~~~g~~~~~~~l~~~l~~ 161 (165)
T 3ha9_A 137 MDKSSNVLYAGTTPSLGELESVIKS 161 (165)
T ss_dssp EETTCCEEEEEESCCHHHHHHHHHH
T ss_pred EcCCCcEEEeCCCCCHHHHHHHHHH
Confidence 4788888888999 89999888764
No 74
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=20.50 E-value=32 Score=20.33 Aligned_cols=8 Identities=38% Similarity=0.879 Sum_probs=6.0
Q ss_pred ecCCCCCC
Q 047170 50 ICGCCKSP 57 (89)
Q Consensus 50 ~C~~C~sP 57 (89)
.||.|++|
T Consensus 20 ~CP~CG~~ 27 (60)
T 2apo_B 20 ICPKCGEK 27 (60)
T ss_dssp BCSSSCSB
T ss_pred cCcCCCCc
Confidence 48888875
No 75
>2p4p_A Hypothetical protein HD1797; CORC_HLYC, PFAM: PF03471, structural GE PSI-2, protein structure initiative, midwest center for STR genomics; HET: MLY MSE; 1.80A {Haemophilus ducreyi} SCOP: d.145.1.4
Probab=20.33 E-value=65 Score=19.04 Aligned_cols=21 Identities=10% Similarity=0.199 Sum_probs=18.1
Q ss_pred CCceEEEEeecCHHHHHHhhc
Q 047170 26 GQQHLVVKGRFASKYIEGILH 46 (89)
Q Consensus 26 ~~~rlii~G~~~~~~i~~~L~ 46 (89)
++|.++++|+.+-+++++.+.
T Consensus 7 ~dg~~~v~G~~~l~dl~~~l~ 27 (86)
T 2p4p_A 7 NEDSWLIDGATPLEDVMRALN 27 (86)
T ss_dssp CCSEEEEETTSBHHHHHHHTT
T ss_pred CCCEEEEEccCCHHHHHHHhC
Confidence 366999999999999998764
No 76
>2gnr_A Conserved hypothetical protein; 13815350, structural genomics, PSI, protein structure initiative; 1.80A {Sulfolobus solfataricus P2} PDB: 3irb_A
Probab=20.11 E-value=33 Score=23.00 Aligned_cols=15 Identities=13% Similarity=0.191 Sum_probs=12.0
Q ss_pred eecCCCCCCceeEEE
Q 047170 49 VICGCCKSPDTILTN 63 (89)
Q Consensus 49 V~C~~C~sPdT~L~k 63 (89)
..||.|+|.+.+.+.
T Consensus 62 ~~Cp~C~s~~~e~v~ 76 (145)
T 2gnr_A 62 SYCEHCFVKIENYVE 76 (145)
T ss_dssp SEETTTTEECCEEEE
T ss_pred CCCCCCCCCccEEEE
Confidence 579999999877664
Done!