BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047171
(1224 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 728 bits (1879), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 433/1266 (34%), Positives = 692/1266 (54%), Gaps = 86/1266 (6%)
Query: 7 LFRYADGKDKLLLLFGTVGSIGDGMMTPLTMYILSMVINELGT----SDISISIEAVDKV 62
+FRYA D+L +L GT+ +I G+ PL M I + + + S S ++ DK
Sbjct: 38 MFRYAGWLDRLYMLVGTLAAIIHGVALPLMMLIFGDMTDSFASVGNVSKNSTNMSEADKR 97
Query: 63 P-----EKGMC-----------------------WTRTAERQASRIRMEYLKSVLRQEVG 94
E+ M W A RQ +IR ++ +++ QE+G
Sbjct: 98 AMFAKLEEEMTTYAYYYTGIGAGVLIVAYIQVSFWCLAAGRQIHKIRQKFFHAIMNQEIG 157
Query: 95 FFDNQXXXXXXFQVVTNITSDAHSIQDAVAEKIPNCLAHLTSFIGSILVAFLLSWRXXXX 154
+FD ++ T +T D I + + +KI + +F G ++ F W+
Sbjct: 158 WFDVHDVG----ELNTRLTDDVSKINEGIGDKIGMFFQAMATFFGGFIIGFTRGWKLTLV 213
Query: 155 XXPFSLLFIVPGIVFGKVLKDLGAQGKDAYEAAGGIAEQAISSIRTVYSFVGEHQTLKRF 214
S + + ++ K+L + AY AG +AE+ +++IRTV +F G+ + L+R+
Sbjct: 214 ILAISPVLGLSAGIWAKILSSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQKKELERY 273
Query: 215 SLALRKNMELGIKQGLTKGLLLGS-MGMTYGAWAFQSWVGSVLVTERGEKGGLVFVAGIC 273
+ L + LGIK+ +T + +G+ + Y ++A W G+ LV + G V
Sbjct: 274 NNNLEEAKRLGIKKAITANISMGAAFLLIYASYALAFWYGTSLVISKEYSIGQVLTVFFS 333
Query: 274 TILGGVGIMSALPNLSFISQATTAATRIFEMIDRVPVINSEDEIGKTLAYLRGEIEFKDV 333
++G + A PN+ + A AA +F++ID P I+S + G ++G +EFK++
Sbjct: 334 VLIGAFSVGQASPNIEAFANARGAAYEVFKIIDNKPSIDSFSKSGHKPDNIQGNLEFKNI 393
Query: 334 DFSYPTRPDTP-------------TIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHK 380
FSYP+R + T+ LVG+SG GKST + L++R YDP+ G + +DG
Sbjct: 394 HFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQD 453
Query: 381 IKKLQLKWLRSQMGLVNQEPILFSTSIKENILIGKPGASMETVVKAAQAANVHDFIMKLN 440
I+ + +++LR +G+V+QEP+LF+T+I ENI G+ +M+ + KA + AN +DFIMKL
Sbjct: 454 IRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLP 513
Query: 441 DGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQAS 500
++T VG+ G QLSGGQKQRIAIARAL+R+PKILLLDEATSALD ESE +VQ ALD+A
Sbjct: 514 HQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAR 573
Query: 501 QGRTMIIIAHRLSTIRKADLIGVLQSGRVIESGSHDVLMQMNNGEGGAYSKMVQLQQSAM 560
+GRT I+IAHRLST+R AD+I G ++E G+HD LM+ E G Y K+V Q +
Sbjct: 574 EGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMR----EKGIYFKLVMTQTAG- 628
Query: 561 RNEVASGSYNPTKSKSH--HSLMSAQTPHTPINEGSSYQNSPIYPLSPTFSISMTGSFQM 618
NE+ G+ KSK + MS++ + + S + S P +S
Sbjct: 629 -NEIELGN-EACKSKDEIDNLDMSSKDSGSSLIRRRSTRKSICGPHDQDRKLST------ 680
Query: 619 HSVENQNDKNFHDNXXXXXXXXXXXXXXAIEWKRTXXXXXXXXXXXXIYPSYAYCLGSVV 678
K D + EW + P+++ VV
Sbjct: 681 --------KEALDEDVPPASFWRILKLNSTEWPYFVVGIFCAIINGGLQPAFSVIFSKVV 732
Query: 679 SAYFIKDDSKLKSE-TRLYCLIFLGLAFLTLIANLIQHYNFAIMGEHLVQRVREKMLEKI 737
+ + + + + L+ L+FL L ++ I +Q + F GE L +R+R + + +
Sbjct: 733 GVFTNGGPPETQRQNSNLFSLLFLILGIISFITFFLQGFTFGKAGEILTKRLRYMVFKSM 792
Query: 738 FTFEIGWFDQDENTSAAICARLANEAHLVRSFIADRMSLLIQVFFSASLAYTLSLLVTWR 797
++ WFD +NT+ A+ RLAN+A V+ R++++ Q + +SL+ W+
Sbjct: 793 LRQDVSWFDDPKNTTGALTTRLANDAAQVKGATGSRLAVIFQNIANLGTGIIISLIYGWQ 852
Query: 798 VAIVMIAVQPLNIGCFYSRSVLMKSMSEKA--KKSQSEGS-QLASEATTNHRTITAFSSQ 854
+ ++++A+ P+ + V MK +S +A K + EGS ++A+EA N RT+ + + +
Sbjct: 853 LTLLLLAIVPI---IAIAGVVEMKMLSGQALKDKKELEGSGKIATEAIENFRTVVSLTRE 909
Query: 855 DRILDLFRETMKGPKKESIKQSWFSGIGLFSSQFLTTASITLTFWYAGRIMNQGLVSPKQ 914
+ ++ ++++ P + ++K++ GI +Q + S F + ++ Q L++ +
Sbjct: 910 QKFETMYAQSLQIPYRNAMKKAHVFGITFSFTQAMMYFSYAAAFRFGAYLVTQQLMTFEN 969
Query: 915 LFQAFFLLMSTGKNIADAGSMTSDIAKGSSAIRTIFTILDRKSEIDPEDPKASEDIEEPT 974
+ F ++ + S D AK + + I I+++ EID + +
Sbjct: 970 VLLVFSAIVFGAMAVGQVSSFAPDYAKATVSASHIIRIIEKTPEIDSYSTQGLK--PNML 1027
Query: 975 KGFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQS 1034
+G ++ V F+YP+RP + +GL+L+++ G+T+ALVG SG GKST++ L+ERFYDP +
Sbjct: 1028 EGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMA 1087
Query: 1035 GSVMVDERNIKSYNLRKLRSCIALVSQEPTLFAGTIRQNIVYG--KEVATEAEIRKAAVL 1092
GSV +D + IK N++ LR+ + +VSQEP LF +I +NI YG V + EI +AA
Sbjct: 1088 GSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKE 1147
Query: 1093 ANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASE 1152
AN H+FI S D Y+T G++G QLSGGQKQRIA+ARA+++ P ILLLDEATSALD+ SE
Sbjct: 1148 ANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESE 1207
Query: 1153 NLVQEALEKMMVGRTCVVVAHRLSTIQKADNIVVIKNGKVVEQGTQSSLLSMGNGGAYYS 1212
+VQEAL+K GRTC+V+AHRLSTIQ AD IVVI+NGKV E GT LL+ G Y+S
Sbjct: 1208 KVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLLA--QKGIYFS 1265
Query: 1213 LIKMQA 1218
++ +QA
Sbjct: 1266 MVSVQA 1271
Score = 346 bits (888), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 205/523 (39%), Positives = 300/523 (57%), Gaps = 36/523 (6%)
Query: 65 KGMCWTRTAERQASRIRMEYLKSVLRQEVGFFDNQXXXXXXFQVVTNITSDAHSIQDAVA 124
+G + + E R+R KS+LRQ+V +FD+ + T + +DA ++ A
Sbjct: 769 QGFTFGKAGEILTKRLRYMVFKSMLRQDVSWFDDPKNTTGA--LTTRLANDAAQVKGATG 826
Query: 125 EKIPNCLAHLTSFIGSILVAFLLSWRXXXXXXPFSLLFIVPGIVFGKVLKDLGAQGKDAY 184
++ ++ + I+++ + W+ + + G+V K+L + K
Sbjct: 827 SRLAVIFQNIANLGTGIIISLIYGWQLTLLLLAIVPIIAIAGVVEMKMLSGQALKDKKEL 886
Query: 185 EAAGGIAEQAISSIRTVYSFVGEHQTLKRFSLALRKNMELGIKQGLTKGLLLG-----SM 239
E +G IA +AI + RTV S E ++F +++++ + + K + G +
Sbjct: 887 EGSGKIATEAIENFRTVVSLTRE----QKFETMYAQSLQIPYRNAMKKAHVFGITFSFTQ 942
Query: 240 GMTYGAWAFQSWVGSVLVTER---GEKGGLVFVAGICTILGGVGIMSALPNLSFISQATT 296
M Y ++A G+ LVT++ E LVF A + + + S P+ + +AT
Sbjct: 943 AMMYFSYAAAFRFGAYLVTQQLMTFENVLLVFSAIVFGAMAVGQVSSFAPDYA---KATV 999
Query: 297 AATRIFEMIDRVPVINSEDEIGKTLAYLRGEIEFKDVDFSYPTRPDTP------------ 344
+A+ I +I++ P I+S G L G ++F V F+YPTRP P
Sbjct: 1000 SASHIIRIIEKTPEIDSYSTQGLKPNMLEGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKG 1059
Query: 345 -TIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILF 403
T+ LVGSSG GKSTV+ LLERFYDP+ G++ LDG +IK+L ++WLR+Q+G+V+QEPILF
Sbjct: 1060 QTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILF 1119
Query: 404 STSIKENILIGKPG--ASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQR 461
SI ENI G S E +V+AA+ AN+H FI L D Y T+VG G QLSGGQKQR
Sbjct: 1120 DCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQR 1179
Query: 462 IAIARALIRDPKILLLDEATSALDAESERIVQEALDQASQGRTMIIIAHRLSTIRKADLI 521
IAIARAL+R P ILLLDEATSALD ESE++VQEALD+A +GRT I+IAHRLSTI+ ADLI
Sbjct: 1180 IAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLI 1239
Query: 522 GVLQSGRVIESGSHDVLMQMNNGEGGAYSKMVQLQQSAMRNEV 564
V+Q+G+V E G+H L+ + G Y MV +Q A R+ V
Sbjct: 1240 VVIQNGKVKEHGTHQQLL----AQKGIYFSMVSVQAGAKRSYV 1278
Score = 344 bits (882), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 196/536 (36%), Positives = 296/536 (55%), Gaps = 12/536 (2%)
Query: 687 SKLKSETRLYCLIFLGLAFLTLIANLIQHYNFAIMGEHLVQRVREKMLEKIFTFEIGWFD 746
+KL+ E Y + G+ LI IQ + + + ++R+K I EIGWFD
Sbjct: 101 AKLEEEMTTYAYYYTGIGAGVLIVAYIQVSFWCLAAGRQIHKIRQKFFHAIMNQEIGWFD 160
Query: 747 QDENTSAAICARLANEAHLVRSFIADRMSLLIQVFFSASLAYTLSLLVTWRVAIVMIAVQ 806
+ + RL ++ + I D++ + Q + + + W++ +V++A+
Sbjct: 161 VHD--VGELNTRLTDDVSKINEGIGDKIGMFFQAMATFFGGFIIGFTRGWKLTLVILAIS 218
Query: 807 P---LNIGCFYSRSVLMKSMSEKAKKSQSEGSQLASEATTNHRTITAFSSQDRILDLFRE 863
P L+ G + + ++ S ++K + ++ +A E RT+ AF Q + L+ +
Sbjct: 219 PVLGLSAGIW---AKILSSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQKKELERYNN 275
Query: 864 TMKGPKKESIKQSWFSGIGLFSSQFLTTASITLTFWYAGRIMNQGLVSPKQLFQAFFLLM 923
++ K+ IK++ + I + ++ L AS L FWY ++ S Q+ FF ++
Sbjct: 276 NLEEAKRLGIKKAITANISMGAAFLLIYASYALAFWYGTSLVISKEYSIGQVLTVFFSVL 335
Query: 924 STGKNIADAGSMTSDIAKGSSAIRTIFTILDRKSEIDPEDPKASEDIEEPTKGFIELKNV 983
++ A A A +F I+D K ID + + +G +E KN+
Sbjct: 336 IGAFSVGQASPNIEAFANARGAAYEVFKIIDNKPSIDSFSKSGHK--PDNIQGNLEFKNI 393
Query: 984 FFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERN 1043
FSYPSR + I KGL LK+++G+TVALVG SG GKST + L++R YDP G V +D ++
Sbjct: 394 HFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQD 453
Query: 1044 IKSYNLRKLRSCIALVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTE 1103
I++ N+R LR I +VSQEP LFA TI +NI YG+E T EI KA ANA++FI
Sbjct: 454 IRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLP 513
Query: 1104 DGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMM 1163
+DT GERG QLSGGQKQRIA+ARA+++NP ILLLDEATSALD+ SE +VQ AL+K
Sbjct: 514 HQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAR 573
Query: 1164 VGRTCVVVAHRLSTIQKADNIVVIKNGKVVEQGTQSSLLSMGNGGAYYSLIKMQAS 1219
GRT +V+AHRLST++ AD I G +VEQG L M G Y+ L+ Q +
Sbjct: 574 EGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDEL--MREKGIYFKLVMTQTA 627
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 728 bits (1879), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 433/1266 (34%), Positives = 692/1266 (54%), Gaps = 86/1266 (6%)
Query: 7 LFRYADGKDKLLLLFGTVGSIGDGMMTPLTMYILSMVINELGT----SDISISIEAVDKV 62
+FRYA D+L +L GT+ +I G+ PL M I + + + S S ++ DK
Sbjct: 38 MFRYAGWLDRLYMLVGTLAAIIHGVALPLMMLIFGDMTDSFASVGNVSKNSTNMSEADKR 97
Query: 63 P-----EKGMC-----------------------WTRTAERQASRIRMEYLKSVLRQEVG 94
E+ M W A RQ +IR ++ +++ QE+G
Sbjct: 98 AMFAKLEEEMTTYAYYYTGIGAGVLIVAYIQVSFWCLAAGRQIHKIRQKFFHAIMNQEIG 157
Query: 95 FFDNQXXXXXXFQVVTNITSDAHSIQDAVAEKIPNCLAHLTSFIGSILVAFLLSWRXXXX 154
+FD ++ T +T D I + + +KI + +F G ++ F W+
Sbjct: 158 WFDVHDVG----ELNTRLTDDVSKINEGIGDKIGMFFQAMATFFGGFIIGFTRGWKLTLV 213
Query: 155 XXPFSLLFIVPGIVFGKVLKDLGAQGKDAYEAAGGIAEQAISSIRTVYSFVGEHQTLKRF 214
S + + ++ K+L + AY AG +AE+ +++IRTV +F G+ + L+R+
Sbjct: 214 ILAISPVLGLSAGIWAKILSSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQKKELERY 273
Query: 215 SLALRKNMELGIKQGLTKGLLLGS-MGMTYGAWAFQSWVGSVLVTERGEKGGLVFVAGIC 273
+ L + LGIK+ +T + +G+ + Y ++A W G+ LV + G V
Sbjct: 274 NNNLEEAKRLGIKKAITANISMGAAFLLIYASYALAFWYGTSLVISKEYSIGQVLTVFFS 333
Query: 274 TILGGVGIMSALPNLSFISQATTAATRIFEMIDRVPVINSEDEIGKTLAYLRGEIEFKDV 333
++G + A PN+ + A AA +F++ID P I+S + G ++G +EFK++
Sbjct: 334 VLIGAFSVGQASPNIEAFANARGAAYEVFKIIDNKPSIDSFSKSGHKPDNIQGNLEFKNI 393
Query: 334 DFSYPTRPDTP-------------TIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHK 380
FSYP+R + T+ LVG+SG GKST + L++R YDP+ G + +DG
Sbjct: 394 HFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQD 453
Query: 381 IKKLQLKWLRSQMGLVNQEPILFSTSIKENILIGKPGASMETVVKAAQAANVHDFIMKLN 440
I+ + +++LR +G+V+QEP+LF+T+I ENI G+ +M+ + KA + AN +DFIMKL
Sbjct: 454 IRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLP 513
Query: 441 DGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQAS 500
++T VG+ G QLSGGQKQRIAIARAL+R+PKILLLDEATSALD ESE +VQ ALD+A
Sbjct: 514 HQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAR 573
Query: 501 QGRTMIIIAHRLSTIRKADLIGVLQSGRVIESGSHDVLMQMNNGEGGAYSKMVQLQQSAM 560
+GRT I+IAHRLST+R AD+I G ++E G+HD LM+ E G Y K+V Q +
Sbjct: 574 EGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMR----EKGIYFKLVMTQTAG- 628
Query: 561 RNEVASGSYNPTKSKSH--HSLMSAQTPHTPINEGSSYQNSPIYPLSPTFSISMTGSFQM 618
NE+ G+ KSK + MS++ + + S + S P +S
Sbjct: 629 -NEIELGN-EACKSKDEIDNLDMSSKDSGSSLIRRRSTRKSICGPHDQDRKLST------ 680
Query: 619 HSVENQNDKNFHDNXXXXXXXXXXXXXXAIEWKRTXXXXXXXXXXXXIYPSYAYCLGSVV 678
K D + EW + P+++ VV
Sbjct: 681 --------KEALDEDVPPASFWRILKLNSTEWPYFVVGIFCAIINGGLQPAFSVIFSKVV 732
Query: 679 SAYFIKDDSKLKSE-TRLYCLIFLGLAFLTLIANLIQHYNFAIMGEHLVQRVREKMLEKI 737
+ + + + + L+ L+FL L ++ I +Q + F GE L +R+R + + +
Sbjct: 733 GVFTNGGPPETQRQNSNLFSLLFLILGIISFITFFLQGFTFGKAGEILTKRLRYMVFKSM 792
Query: 738 FTFEIGWFDQDENTSAAICARLANEAHLVRSFIADRMSLLIQVFFSASLAYTLSLLVTWR 797
++ WFD +NT+ A+ RLAN+A V+ R++++ Q + +SL+ W+
Sbjct: 793 LRQDVSWFDDPKNTTGALTTRLANDAAQVKGATGSRLAVIFQNIANLGTGIIISLIYGWQ 852
Query: 798 VAIVMIAVQPLNIGCFYSRSVLMKSMSEKA--KKSQSEGS-QLASEATTNHRTITAFSSQ 854
+ ++++A+ P+ + V MK +S +A K + EGS ++A+EA N RT+ + + +
Sbjct: 853 LTLLLLAIVPI---IAIAGVVEMKMLSGQALKDKKELEGSGKIATEAIENFRTVVSLTRE 909
Query: 855 DRILDLFRETMKGPKKESIKQSWFSGIGLFSSQFLTTASITLTFWYAGRIMNQGLVSPKQ 914
+ ++ ++++ P + ++K++ GI +Q + S F + ++ Q L++ +
Sbjct: 910 QKFETMYAQSLQIPYRNAMKKAHVFGITFSFTQAMMYFSYAACFRFGAYLVTQQLMTFEN 969
Query: 915 LFQAFFLLMSTGKNIADAGSMTSDIAKGSSAIRTIFTILDRKSEIDPEDPKASEDIEEPT 974
+ F ++ + S D AK + + I I+++ EID + +
Sbjct: 970 VLLVFSAIVFGAMAVGQVSSFAPDYAKATVSASHIIRIIEKTPEIDSYSTQGLK--PNML 1027
Query: 975 KGFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQS 1034
+G ++ V F+YP+RP + +GL+L+++ G+T+ALVG SG GKST++ L+ERFYDP +
Sbjct: 1028 EGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMA 1087
Query: 1035 GSVMVDERNIKSYNLRKLRSCIALVSQEPTLFAGTIRQNIVYG--KEVATEAEIRKAAVL 1092
GSV +D + IK N++ LR+ + +VSQEP LF +I +NI YG V + EI +AA
Sbjct: 1088 GSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKE 1147
Query: 1093 ANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASE 1152
AN H+FI S D Y+T G++G QLSGGQKQRIA+ARA+++ P ILLLDEATSALD+ SE
Sbjct: 1148 ANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESE 1207
Query: 1153 NLVQEALEKMMVGRTCVVVAHRLSTIQKADNIVVIKNGKVVEQGTQSSLLSMGNGGAYYS 1212
+VQEAL+K GRTC+V+AHRLSTIQ AD IVVI+NGKV E GT LL+ G Y+S
Sbjct: 1208 KVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLLA--QKGIYFS 1265
Query: 1213 LIKMQA 1218
++ +QA
Sbjct: 1266 MVSVQA 1271
Score = 346 bits (887), Expect = 5e-95, Method: Compositional matrix adjust.
Identities = 205/523 (39%), Positives = 300/523 (57%), Gaps = 36/523 (6%)
Query: 65 KGMCWTRTAERQASRIRMEYLKSVLRQEVGFFDNQXXXXXXFQVVTNITSDAHSIQDAVA 124
+G + + E R+R KS+LRQ+V +FD+ + T + +DA ++ A
Sbjct: 769 QGFTFGKAGEILTKRLRYMVFKSMLRQDVSWFDDPKNTTGA--LTTRLANDAAQVKGATG 826
Query: 125 EKIPNCLAHLTSFIGSILVAFLLSWRXXXXXXPFSLLFIVPGIVFGKVLKDLGAQGKDAY 184
++ ++ + I+++ + W+ + + G+V K+L + K
Sbjct: 827 SRLAVIFQNIANLGTGIIISLIYGWQLTLLLLAIVPIIAIAGVVEMKMLSGQALKDKKEL 886
Query: 185 EAAGGIAEQAISSIRTVYSFVGEHQTLKRFSLALRKNMELGIKQGLTKGLLLG-----SM 239
E +G IA +AI + RTV S E ++F +++++ + + K + G +
Sbjct: 887 EGSGKIATEAIENFRTVVSLTRE----QKFETMYAQSLQIPYRNAMKKAHVFGITFSFTQ 942
Query: 240 GMTYGAWAFQSWVGSVLVTER---GEKGGLVFVAGICTILGGVGIMSALPNLSFISQATT 296
M Y ++A G+ LVT++ E LVF A + + + S P+ + +AT
Sbjct: 943 AMMYFSYAACFRFGAYLVTQQLMTFENVLLVFSAIVFGAMAVGQVSSFAPDYA---KATV 999
Query: 297 AATRIFEMIDRVPVINSEDEIGKTLAYLRGEIEFKDVDFSYPTRPDTP------------ 344
+A+ I +I++ P I+S G L G ++F V F+YPTRP P
Sbjct: 1000 SASHIIRIIEKTPEIDSYSTQGLKPNMLEGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKG 1059
Query: 345 -TIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILF 403
T+ LVGSSG GKSTV+ LLERFYDP+ G++ LDG +IK+L ++WLR+Q+G+V+QEPILF
Sbjct: 1060 QTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILF 1119
Query: 404 STSIKENILIGKPG--ASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQR 461
SI ENI G S E +V+AA+ AN+H FI L D Y T+VG G QLSGGQKQR
Sbjct: 1120 DCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQR 1179
Query: 462 IAIARALIRDPKILLLDEATSALDAESERIVQEALDQASQGRTMIIIAHRLSTIRKADLI 521
IAIARAL+R P ILLLDEATSALD ESE++VQEALD+A +GRT I+IAHRLSTI+ ADLI
Sbjct: 1180 IAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLI 1239
Query: 522 GVLQSGRVIESGSHDVLMQMNNGEGGAYSKMVQLQQSAMRNEV 564
V+Q+G+V E G+H L+ + G Y MV +Q A R+ V
Sbjct: 1240 VVIQNGKVKEHGTHQQLL----AQKGIYFSMVSVQAGAKRSYV 1278
Score = 343 bits (881), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 196/536 (36%), Positives = 296/536 (55%), Gaps = 12/536 (2%)
Query: 687 SKLKSETRLYCLIFLGLAFLTLIANLIQHYNFAIMGEHLVQRVREKMLEKIFTFEIGWFD 746
+KL+ E Y + G+ LI IQ + + + ++R+K I EIGWFD
Sbjct: 101 AKLEEEMTTYAYYYTGIGAGVLIVAYIQVSFWCLAAGRQIHKIRQKFFHAIMNQEIGWFD 160
Query: 747 QDENTSAAICARLANEAHLVRSFIADRMSLLIQVFFSASLAYTLSLLVTWRVAIVMIAVQ 806
+ + RL ++ + I D++ + Q + + + W++ +V++A+
Sbjct: 161 VHD--VGELNTRLTDDVSKINEGIGDKIGMFFQAMATFFGGFIIGFTRGWKLTLVILAIS 218
Query: 807 P---LNIGCFYSRSVLMKSMSEKAKKSQSEGSQLASEATTNHRTITAFSSQDRILDLFRE 863
P L+ G + + ++ S ++K + ++ +A E RT+ AF Q + L+ +
Sbjct: 219 PVLGLSAGIW---AKILSSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQKKELERYNN 275
Query: 864 TMKGPKKESIKQSWFSGIGLFSSQFLTTASITLTFWYAGRIMNQGLVSPKQLFQAFFLLM 923
++ K+ IK++ + I + ++ L AS L FWY ++ S Q+ FF ++
Sbjct: 276 NLEEAKRLGIKKAITANISMGAAFLLIYASYALAFWYGTSLVISKEYSIGQVLTVFFSVL 335
Query: 924 STGKNIADAGSMTSDIAKGSSAIRTIFTILDRKSEIDPEDPKASEDIEEPTKGFIELKNV 983
++ A A A +F I+D K ID + + +G +E KN+
Sbjct: 336 IGAFSVGQASPNIEAFANARGAAYEVFKIIDNKPSIDSFSKSGHK--PDNIQGNLEFKNI 393
Query: 984 FFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERN 1043
FSYPSR + I KGL LK+++G+TVALVG SG GKST + L++R YDP G V +D ++
Sbjct: 394 HFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQD 453
Query: 1044 IKSYNLRKLRSCIALVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTE 1103
I++ N+R LR I +VSQEP LFA TI +NI YG+E T EI KA ANA++FI
Sbjct: 454 IRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLP 513
Query: 1104 DGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMM 1163
+DT GERG QLSGGQKQRIA+ARA+++NP ILLLDEATSALD+ SE +VQ AL+K
Sbjct: 514 HQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAR 573
Query: 1164 VGRTCVVVAHRLSTIQKADNIVVIKNGKVVEQGTQSSLLSMGNGGAYYSLIKMQAS 1219
GRT +V+AHRLST++ AD I G +VEQG L M G Y+ L+ Q +
Sbjct: 574 EGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDEL--MREKGIYFKLVMTQTA 627
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 699 bits (1805), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 446/1278 (34%), Positives = 680/1278 (53%), Gaps = 93/1278 (7%)
Query: 7 LFRYADGKDKLLLLFGTVGSIGDGMMTPLTMYILS-----------MVINELGTS----- 50
L+RY +KLLL GT+ ++ G PL M IL +VIN G++
Sbjct: 65 LYRYTTTLEKLLLFIGTLVAVITGAGLPL-MSILQGKVSQAFINEQIVINNNGSTFLPTG 123
Query: 51 --------------------DISISIEAVDKVPEKGMCWTRTAERQASRIRMEYLKSVLR 90
+++ + A ++ C+ AE+ +R+R E++KS+LR
Sbjct: 124 QNYTKTDFEHDVMNVVWSYAAMTVGMWAAGQITVT--CYLYVAEQMNNRLRREFVKSILR 181
Query: 91 QEVGFFDNQXXXXXXFQVVTNITSDAHSIQDAVAEKIPNCLAHLTSFIGSILVAFLLSWR 150
QE+ +FD ++ N+ +++ +KI +L+ FI +VAF SW+
Sbjct: 182 QEISWFDTNHSGTLATKLFDNL----ERVKEGTGDKIGMAFQYLSQFITGFIVAFTHSWQ 237
Query: 151 XXXXXXPFSLLFIVPGIVFGKVLKDLGAQGKDAYEAAGGIAEQAISSIRTVYSFVGEHQT 210
+ + + G K + + Y AG + E+ ISSIRTV S G
Sbjct: 238 LTLVMLAVTPIQALCGFAIAKSMSTFAIRETLRYAKAGKVVEETISSIRTVVSLNGLRYE 297
Query: 211 LKRFSLALRKNMELGIKQGLTKGLLLGSM-GMTYGAWAFQSWVGSVLVTERGEKGGLVFV 269
L+R+S A+ + + G+ +GL G+ G+M + ++A ++G V + G +
Sbjct: 298 LERYSTAVEEAKKAGVLKGLFLGISFGAMQASNFISFALAFYIGVGWVHDGSLNFGDMLT 357
Query: 270 AGICTILGGVGIMSALPNLSFISQATTAATRIFEMIDRVPVINSEDEIGKTLAYLRGEIE 329
++G + + A P L+ + A AA+ I+E++DR PVI+S + G+ ++G+I
Sbjct: 358 TFSSVMMGSMALGLAGPQLAVLGTAQGAASGIYEVLDRKPVIDSSSKAGRKDMKIKGDIT 417
Query: 330 FKDVDFSYPTRPDTP-------------TIGLVGSSGSGKSTVISLLERFYDPVKGNILL 376
++V F+YP+RPD P T+ LVGSSG GKST+ISLL R+YD +KG I +
Sbjct: 418 VENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITI 477
Query: 377 DGHKIKKLQLKWLRSQMGLVNQEPILFSTSIKENILIGKPGASMETVVKAAQAANVHDFI 436
DG ++ + L++LR + +V+QEP LF+ +I+ENI +GK G + E +V A + AN FI
Sbjct: 478 DGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLGKEGITREEMVAACKMANAEKFI 537
Query: 437 MKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEAL 496
L +GY T VG G QLSGGQKQRIAIARAL+R+PKILLLDEATSALDAESE IVQ+AL
Sbjct: 538 KTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQAL 597
Query: 497 DQASQGRTMIIIAHRLSTIRKADLIGVLQSGRVIESGSHDVLMQMNNGEGGAYSKMVQLQ 556
D+A++GRT IIIAHRLSTIR ADLI ++G+V+E G H LM + G Y +V Q
Sbjct: 598 DKAAKGRTTIIIAHRLSTIRNADLIISCKNGQVVEVGDHRALM----AQQGLYYDLVTAQ 653
Query: 557 Q-SAMRNEVASGSYNPTKSKSHHSLMSAQTPHTPINEGSSYQNSPIYPLSPTFSISMTGS 615
+ + A G + S + ++ QT +EG S Q S + + S GS
Sbjct: 654 TFTDAVDSAAEGKF------SRENSVARQTSE---HEGLSRQASEMDDIMNRVRSSTIGS 704
Query: 616 FQMHSVENQND------------KNFHDNXXXXXXXXXXXXXXAIEWKRTXXXXXXXXXX 663
V ++ + + +N
Sbjct: 705 ITNGPVIDEKEERIGKDALSRLKQELEENNAQKTNLFEILYHARPHALSLFIGMSTATIG 764
Query: 664 XXIYPSYAYCLGSVVSAYFIKDDSKLKSETRLYCLIFLGLAFLTLIANLIQHYNFAIMGE 723
IYP+Y+ S ++ F + + S+ + L+FL LA I + + + I E
Sbjct: 765 GFIYPTYSVFFTSFMNV-FAGNPADFLSQGHFWALMFLVLAAAQGICSFLMTFFMGIASE 823
Query: 724 HLVQRVREKMLEKIFTFEIGWFDQDENTSAAICARLANEAHLVRSFIADRMSLLIQVFFS 783
L + +R K+ + + IG+FD +N S I RLA + +R+ I R S +I S
Sbjct: 824 SLTRDLRNKLFRNVLSQHIGFFDSPQNASGKISTRLATDVPNLRTAIDFRFSTVITTLVS 883
Query: 784 ASLAYTLSLLVTWRVAIVMIAVQPLNIGCFYSRSVLMKSMSEKAKKSQSEGSQLASEATT 843
L+ W++A+++IA+ P+ Y R + K+ ++ ++A EA
Sbjct: 884 MVAGIGLAFFYGWQMALLIIAILPIVAFGQYLRGRRFTGKNVKSASEFADSGKIAIEAIE 943
Query: 844 NHRTITAFSSQDRILDLFRETMKGPKKESIKQSWFSGI--GLFSSQFLTTASITLTFWYA 901
N RT+ A + +D + F E + P KE+IK+++ G+ G SS + A
Sbjct: 944 NVRTVQALAREDTFYENFCEKLDIPHKEAIKEAFIQGLSYGCASSVLYLLNTCAYRMGLA 1003
Query: 902 GRIMNQGLVSPKQLFQAFFLLMSTGKNIADAGSMTSDIAKGSSAIRTIFTILDRKSEIDP 961
I + + P ++ + + + + + A S + AK + A IF +L + S+ID
Sbjct: 1004 LIITDPPTMQPMRVLRVMYAITISTSTLGFATSYFPEYAKATFAGGIIFGMLRKISKIDS 1063
Query: 962 EDPKASEDIEEPTKGFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKST 1021
++ G + KNV F+YP RP+ I KGL+ +E G+T+ALVG SG GKST
Sbjct: 1064 LSLAGE---KKKLYGKVIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKST 1120
Query: 1022 IIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIALVSQEPTLFAGTIRQNIVYGKEVA 1081
++ L+ERFYD G + +D IK+ N RS IA+VSQEPTLF +I +NI+YG + +
Sbjct: 1121 VVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAENIIYGLDPS 1180
Query: 1082 --TEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILL 1139
T A++ +AA LAN H FI+ +G++T G+RG QLSGGQKQRIA+ARA+++NP ILL
Sbjct: 1181 SVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKILL 1240
Query: 1140 LDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLSTIQKADNIVVIKNGKVVEQGTQS 1199
LDEATSALD+ SE +VQEAL++ GRTC+V+AHRL+T+ AD I V+ NG ++E+GT +
Sbjct: 1241 LDEATSALDTESEKVVQEALDRAREGRTCIVIAHRLNTVMNADCIAVVSNGTIIEKGTHT 1300
Query: 1200 SLLSMGNGGAYYSLIKMQ 1217
L+S GAYY L + Q
Sbjct: 1301 QLMS--EKGAYYKLTQKQ 1316
Score = 303 bits (775), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 190/502 (37%), Positives = 281/502 (55%), Gaps = 35/502 (6%)
Query: 80 IRMEYLKSVLRQEVGFFDNQXXXXXXFQVVTNITSDAHSIQDAVAEKIPNCLAHLTSFIG 139
+R + ++VL Q +GFFD+ ++ T + +D +++ A+ + + L S +
Sbjct: 829 LRNKLFRNVLSQHIGFFDSPQNASG--KISTRLATDVPNLRTAIDFRFSTVITTLVSMVA 886
Query: 140 SILVAFLLSWRXXXXXXPFSLLFIVPGIVFGKVLKDLGAQGKDAYEAA-----GGIAEQA 194
I +AF W+ ++ I+P + FG+ L+ GK+ A+ G IA +A
Sbjct: 887 GIGLAFFYGWQMALL-----IIAILPIVAFGQYLRGRRFTGKNVKSASEFADSGKIAIEA 941
Query: 195 ISSIRTVYSFVGEHQTLKRFSLALRKNMELGIKQGLTKGLLLG---SMGMTYGAWAFQSW 251
I ++RTV + E + F L + IK+ +GL G S+ A++
Sbjct: 942 IENVRTVQALAREDTFYENFCEKLDIPHKEAIKEAFIQGLSYGCASSVLYLLNTCAYRMG 1001
Query: 252 VGSVLVTERGEKGGLVFVAGICTILGGVGIMSALPNLSFISQATTAATRIFEMIDRVPVI 311
+ ++ + V + + A ++AT A IF M+ ++ I
Sbjct: 1002 LALIITDPPTMQPMRVLRVMYAITISTSTLGFATSYFPEYAKATFAGGIIFGMLRKISKI 1061
Query: 312 NSEDEIGKTLAYLRGEIEFKDVDFSYPTRPDTP-------------TIGLVGSSGSGKST 358
+S G+ L G++ FK+V F+YP RP+ T+ LVG SG GKST
Sbjct: 1062 DSLSLAGEK-KKLYGKVIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKST 1120
Query: 359 VISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFSTSIKENILIGKPGA 418
V++LLERFYD + G I +DG +IK L + RSQ+ +V+QEP LF SI ENI+ G +
Sbjct: 1121 VVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAENIIYGLDPS 1180
Query: 419 S--METVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILL 476
S M V +AA+ AN+H+FI +L +G+ET+VG G QLSGGQKQRIAIARAL+R+PKILL
Sbjct: 1181 SVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKILL 1240
Query: 477 LDEATSALDAESERIVQEALDQASQGRTMIIIAHRLSTIRKADLIGVLQSGRVIESGSHD 536
LDEATSALD ESE++VQEALD+A +GRT I+IAHRL+T+ AD I V+ +G +IE G+H
Sbjct: 1241 LDEATSALDTESEKVVQEALDRAREGRTCIVIAHRLNTVMNADCIAVVSNGTIIEKGTHT 1300
Query: 537 VLMQMNNGEGGAYSKMVQLQQS 558
LM E GAY K+ Q Q +
Sbjct: 1301 QLMS----EKGAYYKLTQKQMT 1318
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (nucleotide-free Form)
Length = 595
Score = 301 bits (771), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 189/525 (36%), Positives = 285/525 (54%), Gaps = 70/525 (13%)
Query: 72 TAERQASRIRMEYLKSVLRQEVGFFDNQXXXXXXFQVVTNITSDAHSIQDAVAEKIPNCL 131
+ +R +R+R S+LRQEV FFD +++ ++SD + +V E + + L
Sbjct: 89 SGQRIVNRLRTSLFSSILRQEVAFFDKTRTG----ELINRLSSDTALLGRSVTENLSDGL 144
Query: 132 ---------AHLTSFIGSILVAFLLSWRXXXXXXPFSLLFIVPGIVFGKVLKDLGAQGKD 182
+ F+ L F+LS P S++ +++G+ L+ L +D
Sbjct: 145 RAGAQASVGISMMFFVSPNLATFVLS-----VVPPVSII----AVIYGRYLRKLTKVTQD 195
Query: 183 AYEAAGGIAEQAISSIRTVYSFVGEHQTLKRFSLALRKNMELGIKQGLTKGLLLGSMGMT 242
+ A +AE+ I ++RTV +F E +++++ + M+L K+ + G+ G++
Sbjct: 196 SLAQATQLAEERIGNVRTVRAFGKEMTEIEKYASKVDHVMQLARKEAFARAGFFGATGLS 255
Query: 243 YGAWAFQSWVGSVLVTERGEKGGLVFVAGICTILGGVGIMSALPNLSF------------ 290
G+++V KGGL+ + T VG +S+ +F
Sbjct: 256 ----------GNLIVLSVLYKGGLLMGSAHMT----VGELSSFLMYAFWVGISIGGLSSF 301
Query: 291 ---ISQATTAATRIFEMIDRVPVINSEDEIGKTLAYLRGEIEFKDVDFSYPTRPDTPTI- 346
+ + A R++E+++R P + + + +G +EFK+V F+YP RP+ P
Sbjct: 302 YSELMKGLGAGGRLWELLEREPKLPFNEGVILNEKSFQGALEFKNVHFAYPARPEVPIFQ 361
Query: 347 ------------GLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMG 394
LVG SGSGKSTV+SLL R YDP G I LDGH I++L WLRS++G
Sbjct: 362 DFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIG 421
Query: 395 LVNQEPILFSTSIKENILIGKPGAS---METVVKAAQAANVHDFIMKLNDGYETKVGQFG 451
V+QEPILFS SI ENI G S E + + A+ AN FI G+ T VG+ G
Sbjct: 422 TVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKG 481
Query: 452 VQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQASQGRTMIIIAHR 511
V LSGGQKQRIAIARAL+++PKILLLDEATSALDAE+E +VQEALD+ GRT+++IAHR
Sbjct: 482 VLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHR 541
Query: 512 LSTIRKADLIGVLQSGRVIESGSHDVLMQMNNGEGGAYSKMVQLQ 556
LSTI+ A+++ VL G++ E G H+ L+ N G Y K++ Q
Sbjct: 542 LSTIKNANMVAVLDQGKITEYGKHEELLSKPN---GIYRKLMNKQ 583
Score = 299 bits (765), Expect = 8e-81, Method: Compositional matrix adjust.
Identities = 195/562 (34%), Positives = 304/562 (54%), Gaps = 26/562 (4%)
Query: 669 SYAYCLGSVVSAYFIKDDSKLKSETRLYCLIFLGLAFLTLIANLIQHYNFAIMGEHLVQR 728
S + LG ++ + CL + AN I+ Y G+ +V R
Sbjct: 37 SAPFFLGKIIDVIYTNPTVDYSDNLTRLCLGLSAVFLCGAAANAIRVYLMQTSGQRIVNR 96
Query: 729 VREKMLEKIFTFEIGWFDQDENTSAAICARLANEAHLVRSFIADRMSLLIQVFFSASLAY 788
+R + I E+ +FD+ + + RL+++ L+ + + +S ++ AS+
Sbjct: 97 LRTSLFSSILRQEVAFFDKTR--TGELINRLSSDTALLGRSVTENLSDGLRAGAQASVGI 154
Query: 789 TLSLLVTWRVAIVMIAVQPLN--IGCFYSRSVLMKSMSEKAKKSQSEGSQLASEATTNHR 846
++ V+ +A +++V P I Y R ++ +++ + S ++ +QLA E N R
Sbjct: 155 SMMFFVSPNLATFVLSVVPPVSIIAVIYGR--YLRKLTKVTQDSLAQATQLAEERIGNVR 212
Query: 847 TITAFSSQ----DRILDLFRETMKGPKKESIKQSWFSGIGLFSSQFLTTASITLTFWY-A 901
T+ AF + ++ M+ +KE+ F+ G F + L+ I L+ Y
Sbjct: 213 TVRAFGKEMTEIEKYASKVDHVMQLARKEA-----FARAGFFGATGLSGNLIVLSVLYKG 267
Query: 902 GRIMNQGLVSPKQLFQAFFLLMSTGKNIADAGSMTSDIAKGSSAIRTIFTILDRKSEIDP 961
G +M ++ +L G +I S S++ KG A ++ +L+R +P
Sbjct: 268 GLLMGSAHMTVGELSSFLMYAFWVGISIGGLSSFYSELMKGLGAGGRLWELLER----EP 323
Query: 962 EDPKASEDI--EEPTKGFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGK 1019
+ P I E+ +G +E KNV F+YP+RP+ IF+ +L I +G ALVG SGSGK
Sbjct: 324 KLPFNEGVILNEKSFQGALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGK 383
Query: 1020 STIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIALVSQEPTLFAGTIRQNIVYGKE 1079
ST++ L+ R YDP SG++ +D +I+ N LRS I VSQEP LF+ +I +NI YG +
Sbjct: 384 STVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAENIAYGAD 443
Query: 1080 ---VATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPM 1136
T EI++ A +ANA FI + G++T GE+GV LSGGQKQRIA+ARA+LKNP
Sbjct: 444 DPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPK 503
Query: 1137 ILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLSTIQKADNIVVIKNGKVVEQG 1196
ILLLDEATSALD+ +E LVQEAL+++M GRT +V+AHRLSTI+ A+ + V+ GK+ E G
Sbjct: 504 ILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHRLSTIKNANMVAVLDQGKITEYG 563
Query: 1197 TQSSLLSMGNGGAYYSLIKMQA 1218
LLS N G Y L+ Q+
Sbjct: 564 KHEELLSKPN-GIYRKLMNKQS 584
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (plate Form)
Length = 619
Score = 298 bits (764), Expect = 9e-81, Method: Compositional matrix adjust.
Identities = 187/521 (35%), Positives = 282/521 (54%), Gaps = 62/521 (11%)
Query: 72 TAERQASRIRMEYLKSVLRQEVGFFDNQXXXXXXFQVVTNITSDAHSIQDAVAEKIPNCL 131
+ +R +R+R S+LRQEV FFD +++ ++SD + +V E + + L
Sbjct: 120 SGQRIVNRLRTSLFSSILRQEVAFFDKTRTG----ELINRLSSDTALLGRSVTENLSDGL 175
Query: 132 A---------HLTSFIGSILVAFLLSWRXXXXXXPFSLLFIVPGIVFGKVLKDLGAQGKD 182
+ F+ L F+LS P S++ +++G+ L+ L +D
Sbjct: 176 RAGAQASVGISMMFFVSPNLATFVLS-----VVPPVSII----AVIYGRYLRKLTKVTQD 226
Query: 183 AYEAAGGIAEQAISSIRTVYSFVGEHQTLKRFSLALRKNMELGIKQGLTKGLLLGSMGMT 242
+ A +AE+ I ++RTV +F E +++++ + M+L K+ + G+ G++
Sbjct: 227 SLAQATQLAEERIGNVRTVRAFGKEMTEIEKYASKVDHVMQLARKEAFARAGFFGATGLS 286
Query: 243 YGAWAFQSWVGSVLVTERGEKGGLVFVAGICTI-----------LGGVGIMSALPNLSFI 291
G+++V KGGL+ + T+ G+ I S +
Sbjct: 287 ----------GNLIVLSVLYKGGLLMGSAHMTVGELSSFLMYAFWVGISIGGLSSFYSEL 336
Query: 292 SQATTAATRIFEMIDRVPVINSEDEIGKTLAYLRGEIEFKDVDFSYPTRPDTPTI----- 346
+ A R++E+++R P + + + +G +EFK+V F+YP RP+ P
Sbjct: 337 MKGLGAGGRLWELLEREPKLPFNEGVILNEKSFQGALEFKNVHFAYPARPEVPIFQDFSL 396
Query: 347 --------GLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQ 398
LVG SGSGKSTV+SLL R YDP G I LDGH I++L WLRS++G V+Q
Sbjct: 397 SIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQ 456
Query: 399 EPILFSTSIKENILIGKPGAS---METVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLS 455
EPILFS SI ENI G S E + + A+ AN FI G+ T VG+ GV LS
Sbjct: 457 EPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLS 516
Query: 456 GGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQASQGRTMIIIAHRLSTI 515
GGQKQRIAIARAL+++PKILLLDEATSALDAE+E +VQEALD+ GRT+++IAH LSTI
Sbjct: 517 GGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHHLSTI 576
Query: 516 RKADLIGVLQSGRVIESGSHDVLMQMNNGEGGAYSKMVQLQ 556
+ A+++ VL G++ E G H+ L+ N G Y K++ Q
Sbjct: 577 KNANMVAVLDQGKITEYGKHEELLSKPN---GIYRKLMNKQ 614
Score = 297 bits (761), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 194/562 (34%), Positives = 303/562 (53%), Gaps = 26/562 (4%)
Query: 669 SYAYCLGSVVSAYFIKDDSKLKSETRLYCLIFLGLAFLTLIANLIQHYNFAIMGEHLVQR 728
S + LG ++ + CL + AN I+ Y G+ +V R
Sbjct: 68 SAPFFLGKIIDVIYTNPTVDYSDNLTRLCLGLSAVFLCGAAANAIRVYLMQTSGQRIVNR 127
Query: 729 VREKMLEKIFTFEIGWFDQDENTSAAICARLANEAHLVRSFIADRMSLLIQVFFSASLAY 788
+R + I E+ +FD+ + + RL+++ L+ + + +S ++ AS+
Sbjct: 128 LRTSLFSSILRQEVAFFDKTR--TGELINRLSSDTALLGRSVTENLSDGLRAGAQASVGI 185
Query: 789 TLSLLVTWRVAIVMIAVQPLN--IGCFYSRSVLMKSMSEKAKKSQSEGSQLASEATTNHR 846
++ V+ +A +++V P I Y R ++ +++ + S ++ +QLA E N R
Sbjct: 186 SMMFFVSPNLATFVLSVVPPVSIIAVIYGR--YLRKLTKVTQDSLAQATQLAEERIGNVR 243
Query: 847 TITAFSSQ----DRILDLFRETMKGPKKESIKQSWFSGIGLFSSQFLTTASITLTFWY-A 901
T+ AF + ++ M+ +KE+ F+ G F + L+ I L+ Y
Sbjct: 244 TVRAFGKEMTEIEKYASKVDHVMQLARKEA-----FARAGFFGATGLSGNLIVLSVLYKG 298
Query: 902 GRIMNQGLVSPKQLFQAFFLLMSTGKNIADAGSMTSDIAKGSSAIRTIFTILDRKSEIDP 961
G +M ++ +L G +I S S++ KG A ++ +L+R +P
Sbjct: 299 GLLMGSAHMTVGELSSFLMYAFWVGISIGGLSSFYSELMKGLGAGGRLWELLER----EP 354
Query: 962 EDPKASEDI--EEPTKGFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGK 1019
+ P I E+ +G +E KNV F+YP+RP+ IF+ +L I +G ALVG SGSGK
Sbjct: 355 KLPFNEGVILNEKSFQGALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGK 414
Query: 1020 STIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIALVSQEPTLFAGTIRQNIVYGKE 1079
ST++ L+ R YDP SG++ +D +I+ N LRS I VSQEP LF+ +I +NI YG +
Sbjct: 415 STVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAENIAYGAD 474
Query: 1080 ---VATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPM 1136
T EI++ A +ANA FI + G++T GE+GV LSGGQKQRIA+ARA+LKNP
Sbjct: 475 DPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPK 534
Query: 1137 ILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLSTIQKADNIVVIKNGKVVEQG 1196
ILLLDEATSALD+ +E LVQEAL+++M GRT +V+AH LSTI+ A+ + V+ GK+ E G
Sbjct: 535 ILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHHLSTIKNANMVAVLDQGKITEYG 594
Query: 1197 TQSSLLSMGNGGAYYSLIKMQA 1218
LLS N G Y L+ Q+
Sbjct: 595 KHEELLSKPN-GIYRKLMNKQS 615
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 268 bits (686), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 174/526 (33%), Positives = 293/526 (55%), Gaps = 21/526 (3%)
Query: 698 LIFLGLAFLTLIANLIQHYNFAIMGEHLVQRVREKMLEKIFTFEIGWFDQDENTSAAICA 757
L+ +GL L I + + Y + + +V +R ++ + + +FD+ ++ + +
Sbjct: 69 LVVIGLMILRGITSYVSSYCISWVSGKVVMTMRRRLFGHMMGMPVSFFDK--QSTGTLLS 126
Query: 758 RLANEAHLVRSFIADRMSLLIQVFFSASLAYTLSLLVTWRVAIVMIAVQPLNIGCFYSRS 817
R+ ++ V S + + +++ S + + +W+++I++I + P+ S
Sbjct: 127 RITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILIVLAPIVSIAIRVVS 186
Query: 818 VLMKSMSEKAKKSQSEGSQLASEATTNHRTITAFSSQDRILDLFRETMKGPKKESIKQSW 877
+++S+ + + + + A + H+ + F Q+ F + + + +K
Sbjct: 187 KRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRLQGMKMVS 246
Query: 878 FSGIGLFSSQFLTTASITLTFWYAG--RIMNQ---GLVSPKQLFQAFFLLMSTGKNIADA 932
S I Q + + ++ + A +M+ G ++ +F + LM K++ +
Sbjct: 247 ASSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITV--VFSSMIALMRPLKSLTN- 303
Query: 933 GSMTSDIAKGSSAIRTIFTILDRKSEIDPEDPKASEDIEEPTKGFIELKNVFFSYPSRPD 992
+ + +G +A +T+FTILD + E D + IE T G +E +NV F+YP R D
Sbjct: 304 --VNAQFQRGMAACQTLFTILDSEQEKD----EGKRVIERAT-GDVEFRNVTFTYPGR-D 355
Query: 993 QMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKL 1052
+ + LKI AGKTVALVG+SGSGKSTI LI RFYD G +++D +++ Y L L
Sbjct: 356 VPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGEILMDGHDLREYTLASL 415
Query: 1053 RSCIALVSQEPTLFAGTIRQNIVYGK-EVATEAEIRKAAVLANAHEFISSTEDGYDTYCG 1111
R+ +ALVSQ LF T+ NI Y + E + +I +AA +A A +FI+ ++G DT G
Sbjct: 416 RNQVALVSQNVHLFNDTVANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIG 475
Query: 1112 ERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMVGRTCVVV 1171
E GV LSGGQ+QRIA+ARA+L++ IL+LDEATSALD+ SE +Q AL+++ RT +V+
Sbjct: 476 ENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVI 535
Query: 1172 AHRLSTIQKADNIVVIKNGKVVEQGTQSSLLSMGNGGAYYSLIKMQ 1217
AHRLSTI+KAD IVV+++G +VE+GT + LL + G Y L KMQ
Sbjct: 536 AHRLSTIEKADEIVVVEDGVIVERGTHNDLLE--HRGVYAQLHKMQ 579
Score = 234 bits (596), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 161/516 (31%), Positives = 265/516 (51%), Gaps = 51/516 (9%)
Query: 68 CWTRTAERQASRIRMEYLKSVLRQEVGFFDNQXXXXXXFQVVTNITSDAHSIQDAVAEKI 127
C + + + +R ++ V FFD Q +++ IT D+ + + + +
Sbjct: 88 CISWVSGKVVMTMRRRLFGHMMGMPVSFFDKQSTGT----LLSRITYDSEQVASSSSGAL 143
Query: 128 PNCLAHLTSFIGSILVAFLLSWRXXXXXXPFSLLFIVPGIVFGKVLKDLGAQGKDAYEAA 187
+ S IG ++ F SW+ + + + V K +++ ++
Sbjct: 144 ITVVREGASIIGLFIMMFYYSWQLSIILIVLAPIVSIAIRVVSKRFRNISKNMQNTMGQV 203
Query: 188 GGIAEQAISSIRTVYSFVGEHQTLKRFSLALRKNMELGIKQGLTKGL------LLGSMGM 241
AEQ + + V F G+ KRF + G+K + L+ S+ +
Sbjct: 204 TTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRLQGMKMVSASSISDPIIQLIASLAL 263
Query: 242 TYGAWA--FQSWVGSVLVTERGEKGGLVFVAGICTIL--GGVGIMSALPNLSFIS----Q 293
+ +A F S + S+ AG T++ + +M L +L+ ++ +
Sbjct: 264 AFVLYAASFPSVMDSL-------------TAGTITVVFSSMIALMRPLKSLTNVNAQFQR 310
Query: 294 ATTAATRIFEMIDRVPVINSEDEIGKTLAYLRGEIEFKDVDFSYPTR------------P 341
A +F ++D +DE + + G++EF++V F+YP R P
Sbjct: 311 GMAACQTLFTILDSE---QEKDEGKRVIERATGDVEFRNVTFTYPGRDVPALRNINLKIP 367
Query: 342 DTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPI 401
T+ LVG SGSGKST+ SL+ RFYD +G IL+DGH +++ L LR+Q+ LV+Q
Sbjct: 368 AGKTVALVGRSGSGKSTIASLITRFYDIDEGEILMDGHDLREYTLASLRNQVALVSQNVH 427
Query: 402 LFSTSIKENILIGKPGA-SMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQ 460
LF+ ++ NI + S E + +AA+ A DFI K+++G +T +G+ GV LSGGQ+Q
Sbjct: 428 LFNDTVANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQ 487
Query: 461 RIAIARALIRDPKILLLDEATSALDAESERIVQEALDQASQGRTMIIIAHRLSTIRKADL 520
RIAIARAL+RD IL+LDEATSALD ESER +Q ALD+ + RT ++IAHRLSTI KAD
Sbjct: 488 RIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADE 547
Query: 521 IGVLQSGRVIESGSHDVLMQMNNGEGGAYSKMVQLQ 556
I V++ G ++E G+H+ L++ G Y+++ ++Q
Sbjct: 548 IVVVEDGVIVERGTHNDLLE----HRGVYAQLHKMQ 579
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 264 bits (674), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 172/526 (32%), Positives = 292/526 (55%), Gaps = 21/526 (3%)
Query: 698 LIFLGLAFLTLIANLIQHYNFAIMGEHLVQRVREKMLEKIFTFEIGWFDQDENTSAAICA 757
L+ +GL L I + I Y + + +V +R ++ + + +FD+ ++ + +
Sbjct: 69 LVVIGLMILRGITSYISSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDK--QSTGTLLS 126
Query: 758 RLANEAHLVRSFIADRMSLLIQVFFSASLAYTLSLLVTWRVAIVMIAVQPLNIGCFYSRS 817
R+ ++ V S + + +++ S + + +W+++I+++ + P+ S
Sbjct: 127 RITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILVVLAPIVSIAIRVVS 186
Query: 818 VLMKSMSEKAKKSQSEGSQLASEATTNHRTITAFSSQDRILDLFRETMKGPKKESIKQSW 877
+S+S+ + + + + A + H+ + F Q+ F + + + +K
Sbjct: 187 KRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVS 246
Query: 878 FSGIGLFSSQFLTTASITLTFWYAG--RIMNQ---GLVSPKQLFQAFFLLMSTGKNIADA 932
S I Q + + ++ + A +M+ G ++ +F + LM K++ +
Sbjct: 247 ASSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITV--VFSSMIALMRPLKSLTN- 303
Query: 933 GSMTSDIAKGSSAIRTIFTILDRKSEIDPEDPKASEDIEEPTKGFIELKNVFFSYPSRPD 992
+ + +G +A +T+F ILD + E D + I+ T G +E +NV F+YP R +
Sbjct: 304 --VNAQFQRGMAACQTLFAILDSEQEKD----EGKRVIDRAT-GDLEFRNVTFTYPGR-E 355
Query: 993 QMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKL 1052
+ + LKI AGKTVALVG+SGSGKSTI LI RFYD G +++D +++ Y L L
Sbjct: 356 VPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASL 415
Query: 1053 RSCIALVSQEPTLFAGTIRQNIVYGK-EVATEAEIRKAAVLANAHEFISSTEDGYDTYCG 1111
R+ +ALVSQ LF T+ NI Y + E + +I +AA +A A +FI+ ++G DT G
Sbjct: 416 RNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIG 475
Query: 1112 ERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMVGRTCVVV 1171
E GV LSGGQ+QRIA+ARA+L++ IL+LDEATSALD+ SE +Q AL+++ RT +V+
Sbjct: 476 ENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVI 535
Query: 1172 AHRLSTIQKADNIVVIKNGKVVEQGTQSSLLSMGNGGAYYSLIKMQ 1217
AHRLSTI++AD IVV+++G +VE+GT S LL+ G Y L KMQ
Sbjct: 536 AHRLSTIEQADEIVVVEDGIIVERGTHSELLA--QHGVYAQLHKMQ 579
Score = 231 bits (590), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 161/516 (31%), Positives = 264/516 (51%), Gaps = 51/516 (9%)
Query: 68 CWTRTAERQASRIRMEYLKSVLRQEVGFFDNQXXXXXXFQVVTNITSDAHSIQDAVAEKI 127
C + + + +R ++ V FFD Q +++ IT D+ + + + +
Sbjct: 88 CISWVSGKVVMTMRRRLFGHMMGMPVAFFDKQSTGT----LLSRITYDSEQVASSSSGAL 143
Query: 128 PNCLAHLTSFIGSILVAFLLSWRXXXXXXPFSLLFIVPGIVFGKVLKDLGAQGKDAYEAA 187
+ S IG ++ F SW+ + + + V K + + ++
Sbjct: 144 ITVVREGASIIGLFIMMFYYSWQLSIILVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQV 203
Query: 188 GGIAEQAISSIRTVYSFVGEHQTLKRFSLALRKNMELGIKQGLTKGL------LLGSMGM 241
AEQ + + V F G+ KRF K G+K + L+ S+ +
Sbjct: 204 TTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASSISDPIIQLIASLAL 263
Query: 242 TYGAWA--FQSWVGSVLVTERGEKGGLVFVAGICTIL--GGVGIMSALPNLSFIS----Q 293
+ +A F S + S+ AG T++ + +M L +L+ ++ +
Sbjct: 264 AFVLYAASFPSVMDSL-------------TAGTITVVFSSMIALMRPLKSLTNVNAQFQR 310
Query: 294 ATTAATRIFEMIDRVPVINSEDEIGKTLAYLRGEIEFKDVDFSYPTR------------P 341
A +F ++D +DE + + G++EF++V F+YP R P
Sbjct: 311 GMAACQTLFAILDSE---QEKDEGKRVIDRATGDLEFRNVTFTYPGREVPALRNINLKIP 367
Query: 342 DTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPI 401
T+ LVG SGSGKST+ SL+ RFYD +G+IL+DGH +++ L LR+Q+ LV+Q
Sbjct: 368 AGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVH 427
Query: 402 LFSTSIKENILIGKPGA-SMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQ 460
LF+ ++ NI + S E + +AA+ A DFI K+++G +T +G+ GV LSGGQ+Q
Sbjct: 428 LFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQ 487
Query: 461 RIAIARALIRDPKILLLDEATSALDAESERIVQEALDQASQGRTMIIIAHRLSTIRKADL 520
RIAIARAL+RD IL+LDEATSALD ESER +Q ALD+ + RT ++IAHRLSTI +AD
Sbjct: 488 RIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADE 547
Query: 521 IGVLQSGRVIESGSHDVLMQMNNGEGGAYSKMVQLQ 556
I V++ G ++E G+H L+ + G Y+++ ++Q
Sbjct: 548 IVVVEDGIIVERGTHSELL----AQHGVYAQLHKMQ 579
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 256 bits (654), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 168/477 (35%), Positives = 254/477 (53%), Gaps = 44/477 (9%)
Query: 107 QVVTNITSDAHSIQDAVAEKIPNCLAHLTSFIGSILVAFLLSWRXXXXXXPFSLLFIVPG 166
QV++ + +D +D + + N + I ++ + F L + +I+
Sbjct: 119 QVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTV 178
Query: 167 IVFGKVLKDLGAQGKDAYEAAGGIAEQAISSIRTVYSFVGEHQTLKRFSLALRKNMELGI 226
VF L+ L + A G + + I V SF E K F +KN
Sbjct: 179 YVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFD---KKNTNF-- 233
Query: 227 KQGLTKGLLLGSMGMTYGAWAFQSW-----VGSVLVTERGEKGGLVFVAGICTILGGVGI 281
LT+ L + A++F + +G ++V G + + T+ VG
Sbjct: 234 ---LTRAL----KHTRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGY 286
Query: 282 MSAL--------PNLSFISQATTAATRIFEMIDRVPVINSEDEIG-KTLAYLRGEIEFKD 332
+ L + + ++Q+ + R+F++ID I ++ +G + + +G I+
Sbjct: 287 LELLFGPLRRLVASFTTLTQSFASMDRVFQLIDEDYDI--KNGVGAQPIEIKQGRIDIDH 344
Query: 333 VDFSY-----PTRPDT-------PTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHK 380
V F Y P D T+ VG SG GKST+I+L+ RFYD G IL+DGH
Sbjct: 345 VSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHN 404
Query: 381 IKKLQLKWLRSQMGLVNQEPILFSTSIKENILIGKPGASMETVVKAAQAANVHDFIMKLN 440
IK LR+Q+GLV Q+ ILFS ++KENIL+G+P A+ E VV+AA+ AN HDFIM L
Sbjct: 405 IKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLP 464
Query: 441 DGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQAS 500
GY+T+VG+ GV+LSGGQKQR++IAR + +P IL+LDEATSALD ESE I+QEALD S
Sbjct: 465 QGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLS 524
Query: 501 QGRTMIIIAHRLSTIRKADLIGVLQSGRVIESGSHDVLMQMNNGEGGAYSKMVQLQQ 557
+ RT +I+AHRLSTI AD I V+++G ++E+G+H L+ + GAY + +Q
Sbjct: 525 KDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELI----AKQGAYEHLYSIQN 577
Score = 241 bits (616), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 131/272 (48%), Positives = 178/272 (65%), Gaps = 7/272 (2%)
Query: 950 FTILDRKSEIDPEDPKASEDIE----EPTKGFIELKNVFFSYPSRPDQMIFKGLTLKIEA 1005
F +DR ++ ED + E +G I++ +V F Y + I K + L IE
Sbjct: 308 FASMDRVFQLIDEDYDIKNGVGAQPIEIKQGRIDIDHVSFQYNDN-EAPILKDINLSIEK 366
Query: 1006 GKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIALVSQEPTL 1065
G+TVA VG SG GKST+I LI RFYD SG +++D NIK + LR+ I LV Q+ L
Sbjct: 367 GETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNIL 426
Query: 1066 FAGTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRI 1125
F+ T+++NI+ G+ AT+ E+ +AA +ANAH+FI + GYDT GERGV+LSGGQKQR+
Sbjct: 427 FSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRL 486
Query: 1126 ALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLSTIQKADNIV 1185
++AR L NP IL+LDEATSALD SE+++QEAL+ + RT ++VAHRLSTI AD IV
Sbjct: 487 SIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIV 546
Query: 1186 VIKNGKVVEQGTQSSLLSMGNGGAYYSLIKMQ 1217
VI+NG +VE GT L++ GAY L +Q
Sbjct: 547 VIENGHIVETGTHRELIA--KQGAYEHLYSIQ 576
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 251 bits (641), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 173/538 (32%), Positives = 288/538 (53%), Gaps = 37/538 (6%)
Query: 694 RLYCLIFLGLAFLTLIANLIQHYNFAIMGEHLVQRVREKMLEKIFTFEIGWFDQDENTSA 753
R+ + LGL F+ ++ Y + + ++V ++R ++ + +FDQ+ ++
Sbjct: 65 RILPFMILGLMFVRGLSGFASSYCLSWVSGNVVMQMRRRLFNHFMHMPVRFFDQE--STG 122
Query: 754 AICARLANEAHLVRSFIADRMSLLIQVFFSASLAYTLSLLV--TWRVAIVMIAVQPLNIG 811
+ +R+ ++ V A +L+ V AS+ L+L+ +W++++V+I V P+
Sbjct: 123 GLLSRITYDSEQVAG--ATSRALVSIVREGASIIGLLTLMFWNSWQLSLVLIVVAPVVAF 180
Query: 812 CFYSRSVLMKSMSEKAKKSQSEGSQLASEATTNHRTITAFSSQ-------DRILDLFRE- 863
S + +S + + + A + H+ + ++ Q D++ + R+
Sbjct: 181 AISFVSKRFRKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQ 240
Query: 864 TMKGPKKESIKQ---SWFSGIGLFSSQFLTTASITLTFWYAGRIMNQGLVSPKQLFQAFF 920
TMK +SI + + LF+ FL + G +F A F
Sbjct: 241 TMKLVSAQSIADPVIQMIASLALFAVLFLASVDSIRAELTPGTF--------TVVFSAMF 292
Query: 921 LLMSTGKNIADAGSMTSDIAKGSSAIRTIFTILDRKSEIDPEDPKASEDIEEPTKGFIEL 980
LM K + S+TS+ +G +A +T+F ++D ++E D +A E G +++
Sbjct: 293 GLMRPLKALT---SVTSEFQRGMAACQTLFGLMDLETERDNGKYEA-----ERVNGEVDV 344
Query: 981 KNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVD 1040
K+V F+Y + ++ ++ I GKTVALVG+SGSGKSTI L RFYD SGS+ +D
Sbjct: 345 KDVTFTYQGK-EKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLD 403
Query: 1041 ERNIKSYNLRKLRSCIALVSQEPTLFAGTIRQNIVYGKE-VATEAEIRKAAVLANAHEFI 1099
+++ Y L LR ALVSQ LF TI NI Y E T +I +AA A+A EFI
Sbjct: 404 GHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFI 463
Query: 1100 SSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEAL 1159
+ G DT GE G LSGGQ+QR+A+ARA+L++ +L+LDEATSALD+ SE +Q AL
Sbjct: 464 ENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAAL 523
Query: 1160 EKMMVGRTCVVVAHRLSTIQKADNIVVIKNGKVVEQGTQSSLLSMGNGGAYYSLIKMQ 1217
+++ +T +V+AHRLSTI++AD I+V+ G+++E+G + LL+ GAY L ++Q
Sbjct: 524 DELQKNKTVLVIAHRLSTIEQADEILVVDEGEIIERGRHADLLA--QDGAYAQLHRIQ 579
Score = 222 bits (565), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 162/513 (31%), Positives = 260/513 (50%), Gaps = 45/513 (8%)
Query: 68 CWTRTAERQASRIRMEYLKSVLRQEVGFFDNQXXXXXXFQVVTNITSDAHSIQDAVAEKI 127
C + + ++R + V FFD + +++ IT D+ + A + +
Sbjct: 88 CLSWVSGNVVMQMRRRLFNHFMHMPVRFFDQESTGG----LLSRITYDSEQVAGATSRAL 143
Query: 128 PNCLAHLTSFIGSILVAFLLSWRXXXXXXPFSLLFIVPGIVFG-----KVLKDLGAQGKD 182
+ + S IG + + F SW+ L+ + P + F K + + +
Sbjct: 144 VSIVREGASIIGLLTLMFWNSWQL-----SLVLIVVAPVVAFAISFVSKRFRKISRNMQT 198
Query: 183 AYEAAGGIAEQAISSIRTVYSFVGEHQTLKRF---SLALRKN-MELGIKQGLTKGLLLGS 238
A AEQ + + V S+ G+ KRF S ++R+ M+L Q + ++
Sbjct: 199 AMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTMKLVSAQSIADPVIQMI 258
Query: 239 MGMTYGAWAFQSWVGSVLVTERGEKGGLVFVAGICTILGGVGIMSALPNLSFISQATTAA 298
+ A F + V S+ R E F + G + + AL +++ Q AA
Sbjct: 259 ASLALFAVLFLASVDSI----RAELTPGTFTVVFSAMFGLMRPLKALTSVTSEFQRGMAA 314
Query: 299 TR-IFEMIDRVPVINSEDEIGKTLA-YLRGEIEFKDVDFSYPTR------------PDTP 344
+ +F ++D + +E + GK A + GE++ KDV F+Y + P
Sbjct: 315 CQTLFGLMD----LETERDNGKYEAERVNGEVDVKDVTFTYQGKEKPALSHVSFSIPQGK 370
Query: 345 TIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFS 404
T+ LVG SGSGKST+ +L RFYD G+I LDGH ++ +L LR LV+Q LF+
Sbjct: 371 TVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFN 430
Query: 405 TSIKENILIGKPGA-SMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIA 463
+I NI G + E + +AA+ A+ +FI + G +T +G+ G LSGGQ+QR+A
Sbjct: 431 DTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVA 490
Query: 464 IARALIRDPKILLLDEATSALDAESERIVQEALDQASQGRTMIIIAHRLSTIRKADLIGV 523
IARAL+RD +L+LDEATSALD ESER +Q ALD+ + +T+++IAHRLSTI +AD I V
Sbjct: 491 IARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIEQADEILV 550
Query: 524 LQSGRVIESGSHDVLMQMNNGEGGAYSKMVQLQ 556
+ G +IE G H L+ + GAY+++ ++Q
Sbjct: 551 VDEGEIIERGRHADLL----AQDGAYAQLHRIQ 579
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its
Inward- Facing Conformation
Length = 598
Score = 237 bits (605), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 160/550 (29%), Positives = 286/550 (52%), Gaps = 21/550 (3%)
Query: 672 YCLGSVVSAYFIKDDSKLKSETRLYCLIFLGLAFLTLIANLIQHYNFAIMGEHLVQRVRE 731
Y +G + F+ L Y LI + LT + +Q + + +V R+R+
Sbjct: 58 YLIGKTIDVVFVPRRFDLLPR---YMLILGTIYALTSLLFWLQGKIMLTLSQDVVFRLRK 114
Query: 732 KMLEKIFTFEIGWFDQDENTSAAICARLANEAHLVRSFIADRMSLLIQVFFSASLAYTLS 791
++ EK+ +G+FD+ + I +R+ N+ + + + + +IQ FFS + +
Sbjct: 115 ELFEKLQRVPVGFFDRTPH--GDIISRVINDVDNINNVLGNS---IIQ-FFSGIVTLAGA 168
Query: 792 LLVTWRVAIVM----IAVQPLNIGCFYSRSVLMKSMSEKAKKSQSEGSQLASEATTNHRT 847
+++ +RV +++ +++ PL + S + + ++ + + + E +
Sbjct: 169 VIMMFRVNVILSLVTLSIVPLTVLITQIVSSQTRKYFYENQRVLGQLNGIIEEDISGLTV 228
Query: 848 ITAFSSQDRILDLFRETMKGPKKESIKQSWFSGIGLFSSQFLTTASITLTFWYAGRIMNQ 907
I F+ +++ ++ F + +K K FSG+ + L + G + +
Sbjct: 229 IKLFTREEKEMEKFDRVNESLRKVGTKAQIFSGVLPPLMNMVNNLGFALISGFGGWLALK 288
Query: 908 GLVSPKQLFQAFFLLMSTGKNIADAGSMTSDIAKGSSAIRTIFTILDRKSEIDPEDPKAS 967
+++ + + + + + + I ++ IF ILD + E D DP A
Sbjct: 289 DIITVGTIATFIGYSRQFTRPLNELSNQFNMIQMALASAERIFEILDLEEEKD--DPDAV 346
Query: 968 EDIEEPTKGFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIE 1027
E E +G IE KNV+FSY + + + K +T I+ G+ VALVG +GSGK+TI+ L+
Sbjct: 347 ELRE--VRGEIEFKNVWFSYDKK--KPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLM 402
Query: 1028 RFYDPQSGSVMVDERNIKSYNLRKLRSCIALVSQEPTLFAGTIRQNIVYGKEVATEAEIR 1087
RFYD G ++VD +I+ LRS I +V Q+ LF+ T+++N+ YG AT+ EI+
Sbjct: 403 RFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNPGATDEEIK 462
Query: 1088 KAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSAL 1147
+AA L ++ FI +GY+T + G LS GQ+Q +A+ RA L NP IL+LDEATS +
Sbjct: 463 EAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNV 522
Query: 1148 DSASENLVQEALEKMMVGRTCVVVAHRLSTIQKADNIVVIKNGKVVEQGTQSSLLSMGNG 1207
D+ +E +Q A+ K+M G+T +++AHRL+TI+ AD I+V+++G++VE G L+
Sbjct: 523 DTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKNADLIIVLRDGEIVEMGKHDELIQ--KR 580
Query: 1208 GAYYSLIKMQ 1217
G YY L Q
Sbjct: 581 GFYYELFTSQ 590
Score = 237 bits (604), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 159/479 (33%), Positives = 255/479 (53%), Gaps = 28/479 (5%)
Query: 79 RIRMEYLKSVLRQEVGFFDNQXXXXXXFQVVTNITSDAHSIQDAVAEKIPNCLAHLTSFI 138
R+R E + + R VGFFD +++ + +D +I + + I + + +
Sbjct: 111 RLRKELFEKLQRVPVGFFDRTPHG----DIISRVINDVDNINNVLGNSIIQFFSGIVTLA 166
Query: 139 GSILVAFLLSWRXXXXXXPFSLLFIVPGIVFGKVLKDLGAQGKDAYEAAGGIAEQAISSI 198
G++++ F ++ L ++ + + + + GI E+ IS +
Sbjct: 167 GAVIMMFRVNVILSLVTLSIVPLTVLITQIVSSQTRKYFYENQRVLGQLNGIIEEDISGL 226
Query: 199 RTVYSFVGEHQTLKRFSLALRKNMELGIKQGLTKGLLLGSMGMTYG-AWAFQSWVGSVLV 257
+ F E + +++F ++G K + G+L M M +A S G L
Sbjct: 227 TVIKLFTREEKEMEKFDRVNESLRKVGTKAQIFSGVLPPLMNMVNNLGFALISGFGGWLA 286
Query: 258 TERGEKGGLVFVAGICTILGG----VGIMSALPN-LSFISQATTAATRIFEMIDRVPVIN 312
+ ++ V I T +G ++ L N + I A +A RIFE++D +
Sbjct: 287 LK-----DIITVGTIATFIGYSRQFTRPLNELSNQFNMIQMALASAERIFEILDLEEEKD 341
Query: 313 SEDEIGKTLAYLRGEIEFKDVDFSY----PTRPDTP-------TIGLVGSSGSGKSTVIS 361
D + L +RGEIEFK+V FSY P D + LVG +GSGK+T+++
Sbjct: 342 DPDAV--ELREVRGEIEFKNVWFSYDKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVN 399
Query: 362 LLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFSTSIKENILIGKPGASME 421
LL RFYD +G IL+DG I+K++ LRS +G+V Q+ ILFST++KEN+ G PGA+ E
Sbjct: 400 LLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNPGATDE 459
Query: 422 TVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEAT 481
+ +AA+ + FI L +GYET + G LS GQ+Q +AI RA + +PKIL+LDEAT
Sbjct: 460 EIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEAT 519
Query: 482 SALDAESERIVQEALDQASQGRTMIIIAHRLSTIRKADLIGVLQSGRVIESGSHDVLMQ 540
S +D ++E+ +Q A+ + +G+T IIIAHRL+TI+ ADLI VL+ G ++E G HD L+Q
Sbjct: 520 SNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKNADLIIVLRDGEIVEMGKHDELIQ 578
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 221 bits (563), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 114/244 (46%), Positives = 159/244 (65%), Gaps = 19/244 (7%)
Query: 327 EIEFKDVDFSYPTRPDTPTI--------------GLVGSSGSGKSTVISLLERFYDPVKG 372
+I F+++ F Y +PD+P I G+VG SGSGKST+ L++RFY P G
Sbjct: 1 DITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG 58
Query: 373 NILLDGHKIKKLQLKWLRSQMGLVNQEPILFSTSIKENILIGKPGASMETVVKAAQAANV 432
+L+DGH + WLR Q+G+V Q+ +L + SI +NI + PG S+E V+ AA+ A
Sbjct: 59 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGA 118
Query: 433 HDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIV 492
HDFI +L +GY T VG+ G LSGGQ+QRIAIARAL+ +PKIL+ DEATSALD ESE ++
Sbjct: 119 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 178
Query: 493 QEALDQASQGRTMIIIAHRLSTIRKADLIGVLQSGRVIESGSHDVLMQMNNGEGGAYSKM 552
+ + +GRT+IIIAHRLST++ AD I V++ G+++E G H L+ YS +
Sbjct: 179 MRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPE---SLYSYL 235
Query: 553 VQLQ 556
QLQ
Sbjct: 236 YQLQ 239
Score = 196 bits (498), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 100/227 (44%), Positives = 149/227 (65%), Gaps = 3/227 (1%)
Query: 978 IELKNVFFSYPSRPDQ-MIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGS 1036
I +N+ F Y +PD +I + L I+ G+ + +VG+SGSGKST+ LI+RFY P++G
Sbjct: 2 ITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ 59
Query: 1037 VMVDERNIKSYNLRKLRSCIALVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVLANAH 1096
V++D ++ + LR + +V Q+ L +I NI + ++ AA LA AH
Sbjct: 60 VLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAH 119
Query: 1097 EFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQ 1156
+FIS +GY+T GE+G LSGGQ+QRIA+ARA++ NP IL+ DEATSALD SE+++
Sbjct: 120 DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 179
Query: 1157 EALEKMMVGRTCVVVAHRLSTIQKADNIVVIKNGKVVEQGTQSSLLS 1203
+ K+ GRT +++AHRLST++ AD I+V++ GK+VEQG LLS
Sbjct: 180 RNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLS 226
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp
Bound State
Length = 247
Score = 221 bits (563), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 114/244 (46%), Positives = 159/244 (65%), Gaps = 19/244 (7%)
Query: 327 EIEFKDVDFSYPTRPDTPTI--------------GLVGSSGSGKSTVISLLERFYDPVKG 372
+I F+++ F Y +PD+P I G+VG SGSGKST+ L++RFY P G
Sbjct: 7 DITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG 64
Query: 373 NILLDGHKIKKLQLKWLRSQMGLVNQEPILFSTSIKENILIGKPGASMETVVKAAQAANV 432
+L+DGH + WLR Q+G+V Q+ +L + SI +NI + PG S+E V+ AA+ A
Sbjct: 65 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGA 124
Query: 433 HDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIV 492
HDFI +L +GY T VG+ G LSGGQ+QRIAIARAL+ +PKIL+ DEATSALD ESE ++
Sbjct: 125 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 184
Query: 493 QEALDQASQGRTMIIIAHRLSTIRKADLIGVLQSGRVIESGSHDVLMQMNNGEGGAYSKM 552
+ + +GRT+IIIAHRLST++ AD I V++ G+++E G H L+ YS +
Sbjct: 185 MRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPE---SLYSYL 241
Query: 553 VQLQ 556
QLQ
Sbjct: 242 YQLQ 245
Score = 196 bits (498), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 100/227 (44%), Positives = 149/227 (65%), Gaps = 3/227 (1%)
Query: 978 IELKNVFFSYPSRPDQ-MIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGS 1036
I +N+ F Y +PD +I + L I+ G+ + +VG+SGSGKST+ LI+RFY P++G
Sbjct: 8 ITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ 65
Query: 1037 VMVDERNIKSYNLRKLRSCIALVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVLANAH 1096
V++D ++ + LR + +V Q+ L +I NI + ++ AA LA AH
Sbjct: 66 VLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAH 125
Query: 1097 EFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQ 1156
+FIS +GY+T GE+G LSGGQ+QRIA+ARA++ NP IL+ DEATSALD SE+++
Sbjct: 126 DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 185
Query: 1157 EALEKMMVGRTCVVVAHRLSTIQKADNIVVIKNGKVVEQGTQSSLLS 1203
+ K+ GRT +++AHRLST++ AD I+V++ GK+VEQG LLS
Sbjct: 186 RNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLS 232
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex
With Tnp-Adp
Length = 243
Score = 221 bits (563), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 114/244 (46%), Positives = 159/244 (65%), Gaps = 19/244 (7%)
Query: 327 EIEFKDVDFSYPTRPDTPTI--------------GLVGSSGSGKSTVISLLERFYDPVKG 372
+I F+++ F Y +PD+P I G+VG SGSGKST+ L++RFY P G
Sbjct: 3 DITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG 60
Query: 373 NILLDGHKIKKLQLKWLRSQMGLVNQEPILFSTSIKENILIGKPGASMETVVKAAQAANV 432
+L+DGH + WLR Q+G+V Q+ +L + SI +NI + PG S+E V+ AA+ A
Sbjct: 61 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGA 120
Query: 433 HDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIV 492
HDFI +L +GY T VG+ G LSGGQ+QRIAIARAL+ +PKIL+ DEATSALD ESE ++
Sbjct: 121 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 180
Query: 493 QEALDQASQGRTMIIIAHRLSTIRKADLIGVLQSGRVIESGSHDVLMQMNNGEGGAYSKM 552
+ + +GRT+IIIAHRLST++ AD I V++ G+++E G H L+ YS +
Sbjct: 181 MRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPE---SLYSYL 237
Query: 553 VQLQ 556
QLQ
Sbjct: 238 YQLQ 241
Score = 196 bits (498), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 100/227 (44%), Positives = 149/227 (65%), Gaps = 3/227 (1%)
Query: 978 IELKNVFFSYPSRPDQ-MIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGS 1036
I +N+ F Y +PD +I + L I+ G+ + +VG+SGSGKST+ LI+RFY P++G
Sbjct: 4 ITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ 61
Query: 1037 VMVDERNIKSYNLRKLRSCIALVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVLANAH 1096
V++D ++ + LR + +V Q+ L +I NI + ++ AA LA AH
Sbjct: 62 VLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAH 121
Query: 1097 EFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQ 1156
+FIS +GY+T GE+G LSGGQ+QRIA+ARA++ NP IL+ DEATSALD SE+++
Sbjct: 122 DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 181
Query: 1157 EALEKMMVGRTCVVVAHRLSTIQKADNIVVIKNGKVVEQGTQSSLLS 1203
+ K+ GRT +++AHRLST++ AD I+V++ GK+VEQG LLS
Sbjct: 182 RNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLS 228
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 220 bits (561), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 113/244 (46%), Positives = 159/244 (65%), Gaps = 19/244 (7%)
Query: 327 EIEFKDVDFSYPTRPDTPTI--------------GLVGSSGSGKSTVISLLERFYDPVKG 372
+I F+++ F Y +PD+P I G+VG +GSGKST+ L++RFY P G
Sbjct: 3 DITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRAGSGKSTLTKLIQRFYIPENG 60
Query: 373 NILLDGHKIKKLQLKWLRSQMGLVNQEPILFSTSIKENILIGKPGASMETVVKAAQAANV 432
+L+DGH + WLR Q+G+V Q+ +L + SI +NI + PG S+E V+ AA+ A
Sbjct: 61 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGA 120
Query: 433 HDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIV 492
HDFI +L +GY T VG+ G LSGGQ+QRIAIARAL+ +PKIL+ DEATSALD ESE ++
Sbjct: 121 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 180
Query: 493 QEALDQASQGRTMIIIAHRLSTIRKADLIGVLQSGRVIESGSHDVLMQMNNGEGGAYSKM 552
+ + +GRT+IIIAHRLST++ AD I V++ G+++E G H L+ YS +
Sbjct: 181 MRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPE---SLYSYL 237
Query: 553 VQLQ 556
QLQ
Sbjct: 238 YQLQ 241
Score = 195 bits (496), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 99/227 (43%), Positives = 149/227 (65%), Gaps = 3/227 (1%)
Query: 978 IELKNVFFSYPSRPDQ-MIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGS 1036
I +N+ F Y +PD +I + L I+ G+ + +VG++GSGKST+ LI+RFY P++G
Sbjct: 4 ITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRAGSGKSTLTKLIQRFYIPENGQ 61
Query: 1037 VMVDERNIKSYNLRKLRSCIALVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVLANAH 1096
V++D ++ + LR + +V Q+ L +I NI + ++ AA LA AH
Sbjct: 62 VLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAH 121
Query: 1097 EFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQ 1156
+FIS +GY+T GE+G LSGGQ+QRIA+ARA++ NP IL+ DEATSALD SE+++
Sbjct: 122 DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 181
Query: 1157 EALEKMMVGRTCVVVAHRLSTIQKADNIVVIKNGKVVEQGTQSSLLS 1203
+ K+ GRT +++AHRLST++ AD I+V++ GK+VEQG LLS
Sbjct: 182 RNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLS 228
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 220 bits (560), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 113/244 (46%), Positives = 160/244 (65%), Gaps = 19/244 (7%)
Query: 327 EIEFKDVDFSYPTRPDTPTI--------------GLVGSSGSGKSTVISLLERFYDPVKG 372
+I F+++ F Y +PD+P I G+VG SGSGKST+ L++RFY P G
Sbjct: 7 DITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG 64
Query: 373 NILLDGHKIKKLQLKWLRSQMGLVNQEPILFSTSIKENILIGKPGASMETVVKAAQAANV 432
+L+DGH + WLR Q+G+V Q+ +L + SI +NI + PG S+E V+ AA+ A
Sbjct: 65 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGA 124
Query: 433 HDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIV 492
HDFI +L +GY T VG+ G LSGGQ+QRIAIARAL+ +PKIL+ D+ATSALD ESE ++
Sbjct: 125 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDQATSALDYESEHVI 184
Query: 493 QEALDQASQGRTMIIIAHRLSTIRKADLIGVLQSGRVIESGSHDVLMQMNNGEGGAYSKM 552
+ + +GRT+IIIAHRLST++ AD I V++ G+++E G H L+ + YS +
Sbjct: 185 MRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELL---SEPESLYSYL 241
Query: 553 VQLQ 556
QLQ
Sbjct: 242 YQLQ 245
Score = 195 bits (495), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 99/227 (43%), Positives = 149/227 (65%), Gaps = 3/227 (1%)
Query: 978 IELKNVFFSYPSRPDQ-MIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGS 1036
I +N+ F Y +PD +I + L I+ G+ + +VG+SGSGKST+ LI+RFY P++G
Sbjct: 8 ITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ 65
Query: 1037 VMVDERNIKSYNLRKLRSCIALVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVLANAH 1096
V++D ++ + LR + +V Q+ L +I NI + ++ AA LA AH
Sbjct: 66 VLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAH 125
Query: 1097 EFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQ 1156
+FIS +GY+T GE+G LSGGQ+QRIA+ARA++ NP IL+ D+ATSALD SE+++
Sbjct: 126 DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDQATSALDYESEHVIM 185
Query: 1157 EALEKMMVGRTCVVVAHRLSTIQKADNIVVIKNGKVVEQGTQSSLLS 1203
+ K+ GRT +++AHRLST++ AD I+V++ GK+VEQG LLS
Sbjct: 186 RNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLS 232
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
Length = 241
Score = 217 bits (553), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 113/244 (46%), Positives = 158/244 (64%), Gaps = 19/244 (7%)
Query: 327 EIEFKDVDFSYPTRPDTPTI--------------GLVGSSGSGKSTVISLLERFYDPVKG 372
+I F+++ F Y +PD+P I G+VG SGSGKST+ L++RFY P G
Sbjct: 1 DITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG 58
Query: 373 NILLDGHKIKKLQLKWLRSQMGLVNQEPILFSTSIKENILIGKPGASMETVVKAAQAANV 432
+L+DGH + WLR Q+G+V Q+ +L + SI +NI + PG S+E V+ AA+ A
Sbjct: 59 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGA 118
Query: 433 HDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIV 492
HDFI +L +GY T VG+ G LSGGQ+QRIAIARAL+ +PKIL+ DEATSALD ESE ++
Sbjct: 119 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 178
Query: 493 QEALDQASQGRTMIIIAHRLSTIRKADLIGVLQSGRVIESGSHDVLMQMNNGEGGAYSKM 552
+ + +GRT+IIIA RLST++ AD I V++ G+++E G H L+ YS +
Sbjct: 179 MRNMHKICKGRTVIIIAARLSTVKNADRIIVMEKGKIVEQGKHKELLSEPE---SLYSYL 235
Query: 553 VQLQ 556
QLQ
Sbjct: 236 YQLQ 239
Score = 192 bits (487), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 99/227 (43%), Positives = 148/227 (65%), Gaps = 3/227 (1%)
Query: 978 IELKNVFFSYPSRPDQ-MIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGS 1036
I +N+ F Y +PD +I + L I+ G+ + +VG+SGSGKST+ LI+RFY P++G
Sbjct: 2 ITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ 59
Query: 1037 VMVDERNIKSYNLRKLRSCIALVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVLANAH 1096
V++D ++ + LR + +V Q+ L +I NI + ++ AA LA AH
Sbjct: 60 VLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAH 119
Query: 1097 EFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQ 1156
+FIS +GY+T GE+G LSGGQ+QRIA+ARA++ NP IL+ DEATSALD SE+++
Sbjct: 120 DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 179
Query: 1157 EALEKMMVGRTCVVVAHRLSTIQKADNIVVIKNGKVVEQGTQSSLLS 1203
+ K+ GRT +++A RLST++ AD I+V++ GK+VEQG LLS
Sbjct: 180 RNMHKICKGRTVIIIAARLSTVKNADRIIVMEKGKIVEQGKHKELLS 226
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The
Abc-Transporter Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 217 bits (553), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 113/244 (46%), Positives = 158/244 (64%), Gaps = 19/244 (7%)
Query: 327 EIEFKDVDFSYPTRPDTPTI--------------GLVGSSGSGKSTVISLLERFYDPVKG 372
+I F+++ F Y +PD+P I G+VG SGSGKST+ L++RFY P G
Sbjct: 7 DITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG 64
Query: 373 NILLDGHKIKKLQLKWLRSQMGLVNQEPILFSTSIKENILIGKPGASMETVVKAAQAANV 432
+L+DGH + WLR Q+G+V Q+ +L + SI +NI + PG S+E V+ AA+ A
Sbjct: 65 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGA 124
Query: 433 HDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIV 492
HDFI +L +GY T VG+ G LSGGQ+QRIAIARAL+ +PKIL+ DEATSALD ESE ++
Sbjct: 125 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 184
Query: 493 QEALDQASQGRTMIIIAHRLSTIRKADLIGVLQSGRVIESGSHDVLMQMNNGEGGAYSKM 552
+ + +GRT+IIIA RLST++ AD I V++ G+++E G H L+ YS +
Sbjct: 185 MRNMHKICKGRTVIIIAARLSTVKNADRIIVMEKGKIVEQGKHKELLSEPE---SLYSYL 241
Query: 553 VQLQ 556
QLQ
Sbjct: 242 YQLQ 245
Score = 192 bits (487), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 99/227 (43%), Positives = 148/227 (65%), Gaps = 3/227 (1%)
Query: 978 IELKNVFFSYPSRPDQ-MIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGS 1036
I +N+ F Y +PD +I + L I+ G+ + +VG+SGSGKST+ LI+RFY P++G
Sbjct: 8 ITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ 65
Query: 1037 VMVDERNIKSYNLRKLRSCIALVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVLANAH 1096
V++D ++ + LR + +V Q+ L +I NI + ++ AA LA AH
Sbjct: 66 VLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAH 125
Query: 1097 EFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQ 1156
+FIS +GY+T GE+G LSGGQ+QRIA+ARA++ NP IL+ DEATSALD SE+++
Sbjct: 126 DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 185
Query: 1157 EALEKMMVGRTCVVVAHRLSTIQKADNIVVIKNGKVVEQGTQSSLLS 1203
+ K+ GRT +++A RLST++ AD I+V++ GK+VEQG LLS
Sbjct: 186 RNMHKICKGRTVIIIAARLSTVKNADRIIVMEKGKIVEQGKHKELLS 232
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance
Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance
Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance
Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance
Protein 2
Length = 260
Score = 214 bits (545), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 107/241 (44%), Positives = 158/241 (65%), Gaps = 3/241 (1%)
Query: 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSV 1037
IE +V FSYP + + K + I +G T ALVG +GSGKSTI L+ RFYD + G +
Sbjct: 18 IEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDAE-GDI 76
Query: 1038 MVDERNIKSYNLRKLRSCIALVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVLANAHE 1097
+ +N+ YN +RS I +V Q+ LF TI+ NI+YGK AT+ E+ KA A ++
Sbjct: 77 KIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYGKLDATDEEVIKATKSAQLYD 136
Query: 1098 FISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQE 1157
FI + +DT G +G++LSGG++QRIA+AR +LK+P I++ DEATS+LDS +E L Q+
Sbjct: 137 FIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQK 196
Query: 1158 ALEKMMVGRTCVVVAHRLSTIQKADNIVVIKNGKVVEQGTQSSLLSMGNGGAYYSLIKMQ 1217
A+E + RT +++AHRLSTI A++I+++ GK+VE+GT LL + G Y + MQ
Sbjct: 197 AVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLKL--NGEYAEMWNMQ 254
Query: 1218 A 1218
+
Sbjct: 255 S 255
Score = 209 bits (532), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 110/242 (45%), Positives = 162/242 (66%), Gaps = 18/242 (7%)
Query: 328 IEFKDVDFSYPTR-------------PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNI 374
IEF DV+FSYP + P T LVG +GSGKST+ LL RFYD +G+I
Sbjct: 18 IEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYD-AEGDI 76
Query: 375 LLDGHKIKKLQLKWLRSQMGLVNQEPILFSTSIKENILIGKPGASMETVVKAAQAANVHD 434
+ G + K +RS +G+V Q+ ILF+ +IK NIL GK A+ E V+KA ++A ++D
Sbjct: 77 KIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYGKLDATDEEVIKATKSAQLYD 136
Query: 435 FIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQE 494
FI L ++T VG G++LSGG++QRIAIAR L++DPKI++ DEATS+LD+++E + Q+
Sbjct: 137 FIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQK 196
Query: 495 ALDQASQGRTMIIIAHRLSTIRKADLIGVLQSGRVIESGSHDVLMQMNNGEGGAYSKMVQ 554
A++ + RT+IIIAHRLSTI A+ I +L G+++E G+H L+++N G Y++M
Sbjct: 197 AVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLKLN----GEYAEMWN 252
Query: 555 LQ 556
+Q
Sbjct: 253 MQ 254
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 213 bits (541), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 115/250 (46%), Positives = 162/250 (64%), Gaps = 4/250 (1%)
Query: 975 KGFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQS 1034
KG IE +NV FSY + + + ++ + G+T+ALVG SG+GKSTI+ L+ RFYD S
Sbjct: 51 KGRIEFENVHFSYADGRETL--QDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISS 108
Query: 1035 GSVMVDERNIKSYNLRKLRSCIALVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVLAN 1094
G + +D ++I LRS I +V Q+ LF TI NI YG+ A E+ AA A
Sbjct: 109 GCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAG 168
Query: 1095 AHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENL 1154
H+ I + +GY T GERG++LSGG+KQR+A+AR +LK P I+LLDEATSALD+++E
Sbjct: 169 IHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERA 228
Query: 1155 VQEALEKMMVGRTCVVVAHRLSTIQKADNIVVIKNGKVVEQGTQSSLLSMGNGGAYYSLI 1214
+Q +L K+ RT +VVAHRLST+ AD I+VIK+G +VE+G +LLS GG Y +
Sbjct: 229 IQASLAKVCANRTTIVVAHRLSTVVNADQILVIKDGCIVERGRHEALLS--RGGVYADMW 286
Query: 1215 KMQASRSPYS 1224
++Q + S
Sbjct: 287 QLQQGQEETS 296
Score = 212 bits (540), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 113/248 (45%), Positives = 160/248 (64%), Gaps = 15/248 (6%)
Query: 321 LAYLRGEIEFKDVDFSYPTRPDT-----------PTIGLVGSSGSGKSTVISLLERFYDP 369
L + +G IEF++V FSY +T T+ LVG SG+GKST++ LL RFYD
Sbjct: 47 LRFQKGRIEFENVHFSYADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDI 106
Query: 370 VKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFSTSIKENILIGKPGASMETVVKAAQA 429
G I +DG I ++ LRS +G+V Q+ +LF+ +I +NI G+ A + V AAQA
Sbjct: 107 SSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQA 166
Query: 430 ANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESE 489
A +HD IM +GY T+VG+ G++LSGG+KQR+AIAR +++ P I+LLDEATSALD +E
Sbjct: 167 AGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNE 226
Query: 490 RIVQEALDQASQGRTMIIIAHRLSTIRKADLIGVLQSGRVIESGSHDVLMQMNNGEGGAY 549
R +Q +L + RT I++AHRLST+ AD I V++ G ++E G H+ L+ GG Y
Sbjct: 227 RAIQASLAKVCANRTTIVVAHRLSTVVNADQILVIKDGCIVERGRHEALLS----RGGVY 282
Query: 550 SKMVQLQQ 557
+ M QLQQ
Sbjct: 283 ADMWQLQQ 290
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its
Inward- Facing Conformation
Length = 587
Score = 206 bits (524), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 134/484 (27%), Positives = 251/484 (51%), Gaps = 26/484 (5%)
Query: 729 VREKMLEKIFTFEIGWFDQDENTSAAICARLANEAHLVRSFIADRMSLLIQVFFSASLAY 788
+R + K+ +F I ++ +S + RL N+ +++ + +L+++ A L +
Sbjct: 98 LRRDLFRKVLSFSISNVNRFHTSS--LITRLTNDVTQLQNLVM----MLLRIVVRAPLLF 151
Query: 789 T----LSLLVTWRVAIVMIAVQPLNIGCFYSRSVLMKSMSEKAKKSQSEGSQLASEATTN 844
+++ + +++ V+I + P + F + + K ++S E +++ E
Sbjct: 152 VGGIVMAVSINVKLSSVLIFLIPPIVLLFVWLTKKGNPLFRKIQESTDEVNRVVRENLLG 211
Query: 845 HRTITAFSSQDRILDLFRETMKGPKKESIKQSWFSGIGLFSSQ-----FLTTASITLTFW 899
R + AF ++ + FR+ ES+++S S L F+ + W
Sbjct: 212 VRVVRAFRREEYENENFRKA-----NESLRRSIISAFSLIVFALPLFIFIVNMGMIAVLW 266
Query: 900 YAGRIMNQGLVSPKQLFQAFFLLMSTGKNIADAGSMTSDIAKGSSAIRTIFTILDRKSEI 959
+ G ++ + + LM ++ G++ + I + S++ + + +L+ K I
Sbjct: 267 FGGVLVRNNQMEIGSIMAYTNYLMQIMFSLMMIGNILNFIVRASASAKRVLEVLNEKPAI 326
Query: 960 DPEDPK-ASEDIEEPTKGFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSG 1018
+ D A ++E G + +NV F Y D + G+ ++ G VA++G++GSG
Sbjct: 327 EEADNALALPNVE----GSVSFENVEFRYFENTDP-VLSGVNFSVKPGSLVAVLGETGSG 381
Query: 1019 KSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIALVSQEPTLFAGTIRQNIVYGK 1078
KST++ LI R DP+ G V VDE ++++ L+ LR I+ V QE LF+GTI++N+ +G+
Sbjct: 382 KSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSGTIKENLKWGR 441
Query: 1079 EVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMIL 1138
E AT+ EI +AA +A H+FI S +GYD+ G SGGQKQR+++ARA++K P +L
Sbjct: 442 EDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVL 501
Query: 1139 LLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLSTIQKADNIVVIKNGKVVEQGTQ 1198
+LD+ TS++D +E + + L++ G T ++ ++ T AD I+V+ GKV GT
Sbjct: 502 ILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTALLADKILVLHEGKVAGFGTH 561
Query: 1199 SSLL 1202
LL
Sbjct: 562 KELL 565
Score = 189 bits (481), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 130/458 (28%), Positives = 245/458 (53%), Gaps = 38/458 (8%)
Query: 108 VVTNITSDAHSIQDAVAEKIPNCLAHLTSFIGSILVAFLLSWRXXXXXXPFSLLFIVPGI 167
++T +T+D +Q+ V + + F+G I++A ++ + L+F++P I
Sbjct: 122 LITRLTNDVTQLQNLVMMLLRIVVRAPLLFVGGIVMAVSINVKLSSV-----LIFLIPPI 176
Query: 168 VFGKVL-----KDLGAQGKDAYEAAGGIAEQAISSIRTVYSFVGE---HQTLKRFSLALR 219
V V L + +++ + + + + +R V +F E ++ ++ + +LR
Sbjct: 177 VLLFVWLTKKGNPLFRKIQESTDEVNRVVRENLLGVRVVRAFRREEYENENFRKANESLR 236
Query: 220 KNMELG---IKQGLTKGLLLGSMGMTYGAWAFQSWVGSVLVTERGEKGG--LVFVAGICT 274
+++ I L + + +MGM W G VLV + G + + +
Sbjct: 237 RSIISAFSLIVFALPLFIFIVNMGMIAVLW-----FGGVLVRNNQMEIGSIMAYTNYLMQ 291
Query: 275 ILGGVGIMSALPNLSFISQATTAATRIFEMIDRVPVINSEDEIGKTLAYLRGEIEFKDVD 334
I+ + ++ + L+FI +A+ +A R+ E+++ P I D L + G + F++V+
Sbjct: 292 IMFSLMMIGNI--LNFIVRASASAKRVLEVLNEKPAIEEADN-ALALPNVEGSVSFENVE 348
Query: 335 FSYPTRPDT------------PTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIK 382
F Y D + ++G +GSGKST+++L+ R DP +G + +D ++
Sbjct: 349 FRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVR 408
Query: 383 KLQLKWLRSQMGLVNQEPILFSTSIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDG 442
++LK LR + V QE +LFS +IKEN+ G+ A+ + +V+AA+ A +HDFI+ L +G
Sbjct: 409 TVKLKDLRGHISAVPQETVLFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEG 468
Query: 443 YETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQASQG 502
Y+++V + G SGGQKQR++IARAL++ PK+L+LD+ TS++D +E+ + + L + ++G
Sbjct: 469 YDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKG 528
Query: 503 RTMIIIAHRLSTIRKADLIGVLQSGRVIESGSHDVLMQ 540
T II ++ T AD I VL G+V G+H L++
Sbjct: 529 CTTFIITQKIPTALLADKILVLHEGKVAGFGTHKELLE 566
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 201 bits (510), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 103/244 (42%), Positives = 151/244 (61%), Gaps = 5/244 (2%)
Query: 975 KGFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQS 1034
KG ++ ++V F+YP+ P+ + +GLT + GK ALVG +GSGKST+ L++ Y P
Sbjct: 14 KGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTG 73
Query: 1035 GSVMVDERNIKSYNLRKLRSCIALVSQEPTLFAGTIRQNIVYG-KEVATEAEIRKAAVLA 1093
G V++D + Y+ L + +A V QEP LF + R+NI YG T EI A+ +
Sbjct: 74 GKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMES 133
Query: 1094 NAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASEN 1153
AH+FIS GYDT GE G QLSGGQ+Q +ALARA+++ P +L+LD+ATSALD+ ++
Sbjct: 134 GAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDQATSALDAGNQL 193
Query: 1154 LVQEAL--EKMMVGRTCVVVAHRLSTIQKADNIVVIKNGKVVEQGTQSSLLSMGNGGAYY 1211
VQ L RT +++ H+LS ++A +I+ +K G V EQGT L M GG Y
Sbjct: 194 RVQRLLYESPEWASRTVLLITHQLSLAERAHHILFLKEGSVCEQGTHLQL--MERGGCYR 251
Query: 1212 SLIK 1215
S+++
Sbjct: 252 SMVE 255
Score = 188 bits (478), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 102/247 (41%), Positives = 148/247 (59%), Gaps = 20/247 (8%)
Query: 324 LRGEIEFKDVDFSYPTRPDTPTI-------------GLVGSSGSGKSTVISLLERFYDPV 370
++G ++F+DV F+YP P+ + LVG +GSGKSTV +LL+ Y P
Sbjct: 13 MKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPT 72
Query: 371 KGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFSTSIKENILIG-KPGASMETVVKAAQA 429
G +LLDG + + +L +Q+ V QEP+LF S +ENI G +ME + A
Sbjct: 73 GGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAME 132
Query: 430 ANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESE 489
+ HDFI GY+T+VG+ G QLSGGQ+Q +A+ARALIR P++L+LD+ATSALDA ++
Sbjct: 133 SGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDQATSALDAGNQ 192
Query: 490 RIVQEALDQASQ--GRTMIIIAHRLSTIRKADLIGVLQSGRVIESGSHDVLMQMNNGEGG 547
VQ L ++ + RT+++I H+LS +A I L+ G V E G+H LM+ GG
Sbjct: 193 LRVQRLLYESPEWASRTVLLITHQLSLAERAHHILFLKEGSVCEQGTHLQLME----RGG 248
Query: 548 AYSKMVQ 554
Y MV+
Sbjct: 249 CYRSMVE 255
>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
pdb|2IXE|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
Length = 271
Score = 196 bits (499), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 102/244 (41%), Positives = 149/244 (61%), Gaps = 5/244 (2%)
Query: 975 KGFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQS 1034
KG ++ ++V F+YP+ P+ + +GLT + GK ALVG +GSGKST+ L++ Y P
Sbjct: 14 KGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTG 73
Query: 1035 GSVMVDERNIKSYNLRKLRSCIALVSQEPTLFAGTIRQNIVYG-KEVATEAEIRKAAVLA 1093
G V++D + Y+ L + +A V QEP LF + R+NI YG T EI A+ +
Sbjct: 74 GKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMES 133
Query: 1094 NAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASEN 1153
AH+FIS GYDT GE G QLSGGQ+Q +ALARA+++ P +L+LD ATSALD+ ++
Sbjct: 134 GAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQL 193
Query: 1154 LVQEAL--EKMMVGRTCVVVAHRLSTIQKADNIVVIKNGKVVEQGTQSSLLSMGNGGAYY 1211
VQ L RT +++ +LS ++A +I+ +K G V EQGT L M GG Y
Sbjct: 194 RVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQL--MERGGCYR 251
Query: 1212 SLIK 1215
S+++
Sbjct: 252 SMVE 255
Score = 184 bits (468), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 101/247 (40%), Positives = 146/247 (59%), Gaps = 20/247 (8%)
Query: 324 LRGEIEFKDVDFSYPTRPDTPTI-------------GLVGSSGSGKSTVISLLERFYDPV 370
++G ++F+DV F+YP P+ + LVG +GSGKSTV +LL+ Y P
Sbjct: 13 MKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPT 72
Query: 371 KGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFSTSIKENILIG-KPGASMETVVKAAQA 429
G +LLDG + + +L +Q+ V QEP+LF S +ENI G +ME + A
Sbjct: 73 GGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAME 132
Query: 430 ANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESE 489
+ HDFI GY+T+VG+ G QLSGGQ+Q +A+ARALIR P++L+LD ATSALDA ++
Sbjct: 133 SGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQ 192
Query: 490 RIVQEALDQASQ--GRTMIIIAHRLSTIRKADLIGVLQSGRVIESGSHDVLMQMNNGEGG 547
VQ L ++ + RT+++I +LS +A I L+ G V E G+H LM+ GG
Sbjct: 193 LRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLME----RGG 248
Query: 548 AYSKMVQ 554
Y MV+
Sbjct: 249 CYRSMVE 255
>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|B Chain B, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|C Chain C, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|D Chain D, Crystal Structure Of Lmra Atp-Binding Domain
Length = 243
Score = 194 bits (494), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 98/224 (43%), Positives = 148/224 (66%), Gaps = 3/224 (1%)
Query: 981 KNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVD 1040
++V F+Y + I + ++ + + +A G SG GKSTI L+ERFY P +G + +D
Sbjct: 5 RHVDFAYDDS--EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITID 62
Query: 1041 ERNIKSYNLRKLRSCIALVSQEPTLFAGTIRQNIVYGKE-VATEAEIRKAAVLANAHEFI 1099
+ I + +L RS I VSQ+ + AGTIR+N+ YG E T+ ++ + LA A F+
Sbjct: 63 GQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFV 122
Query: 1100 SSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEAL 1159
+ D +T GERGV++SGGQ+QR+A+ARA L+NP IL+LDEAT++LDS SE++VQ+AL
Sbjct: 123 ENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKAL 182
Query: 1160 EKMMVGRTCVVVAHRLSTIQKADNIVVIKNGKVVEQGTQSSLLS 1203
+ +M GRT +V+AHRLSTI AD I I+ G++ G + L++
Sbjct: 183 DSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVA 226
Score = 184 bits (468), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 95/207 (45%), Positives = 139/207 (67%), Gaps = 2/207 (0%)
Query: 334 DFSYPTRPDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQM 393
D S+ +P++ I G SG GKST+ SLLERFY P G I +DG I + L+ RSQ+
Sbjct: 20 DISFEAQPNS-IIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQI 78
Query: 394 GLVNQEPILFSTSIKENILIGKPGA-SMETVVKAAQAANVHDFIMKLNDGYETKVGQFGV 452
G V+Q+ + + +I+EN+ G G + E + + A F+ + D T+VG+ GV
Sbjct: 79 GFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGV 138
Query: 453 QLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQASQGRTMIIIAHRL 512
++SGGQ+QR+AIARA +R+PKIL+LDEAT++LD+ESE +VQ+ALD +GRT ++IAHRL
Sbjct: 139 KISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRL 198
Query: 513 STIRKADLIGVLQSGRVIESGSHDVLM 539
STI AD I ++ G++ SG H+ L+
Sbjct: 199 STIVDADKIYFIEKGQITGSGKHNELV 225
>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(S621a, G622v, D645n Mutant)
Length = 271
Score = 192 bits (487), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 100/244 (40%), Positives = 148/244 (60%), Gaps = 5/244 (2%)
Query: 975 KGFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQS 1034
KG ++ ++V F+YP+ P+ + +GLT + GK ALVG +GSGKST+ L++ Y P
Sbjct: 14 KGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTG 73
Query: 1035 GSVMVDERNIKSYNLRKLRSCIALVSQEPTLFAGTIRQNIVYG-KEVATEAEIRKAAVLA 1093
G V++D + Y+ L + +A V QEP LF + R+NI YG T EI A+ +
Sbjct: 74 GKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMES 133
Query: 1094 NAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASEN 1153
AH+FIS GYDT GE G QL+ GQ+Q +ALARA+++ P +L+LD ATSALD+ ++
Sbjct: 134 GAHDFISGFPQGYDTEVGETGNQLAVGQRQAVALARALIRKPRLLILDNATSALDAGNQL 193
Query: 1154 LVQEAL--EKMMVGRTCVVVAHRLSTIQKADNIVVIKNGKVVEQGTQSSLLSMGNGGAYY 1211
VQ L RT +++ +LS ++A +I+ +K G V EQGT L M GG Y
Sbjct: 194 RVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQL--MERGGCYR 251
Query: 1212 SLIK 1215
S+++
Sbjct: 252 SMVE 255
Score = 180 bits (456), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 99/247 (40%), Positives = 145/247 (58%), Gaps = 20/247 (8%)
Query: 324 LRGEIEFKDVDFSYPTRPDTPTI-------------GLVGSSGSGKSTVISLLERFYDPV 370
++G ++F+DV F+YP P+ + LVG +GSGKSTV +LL+ Y P
Sbjct: 13 MKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPT 72
Query: 371 KGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFSTSIKENILIG-KPGASMETVVKAAQA 429
G +LLDG + + +L +Q+ V QEP+LF S +ENI G +ME + A
Sbjct: 73 GGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAME 132
Query: 430 ANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESE 489
+ HDFI GY+T+VG+ G QL+ GQ+Q +A+ARALIR P++L+LD ATSALDA ++
Sbjct: 133 SGAHDFISGFPQGYDTEVGETGNQLAVGQRQAVALARALIRKPRLLILDNATSALDAGNQ 192
Query: 490 RIVQEALDQASQ--GRTMIIIAHRLSTIRKADLIGVLQSGRVIESGSHDVLMQMNNGEGG 547
VQ L ++ + RT+++I +LS +A I L+ G V E G+H LM+ GG
Sbjct: 193 LRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLME----RGG 248
Query: 548 AYSKMVQ 554
Y MV+
Sbjct: 249 CYRSMVE 255
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 192 bits (487), Expect = 1e-48, Method: Composition-based stats.
Identities = 99/249 (39%), Positives = 157/249 (63%), Gaps = 9/249 (3%)
Query: 975 KGFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQS 1034
+G ++ ++V F+YP+RPD ++ +GLT + G+ ALVG +GSGKST+ L++ Y P
Sbjct: 12 EGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTG 71
Query: 1035 GSVMVDERNIKSYNLRKLRSCIALVSQEPTLFAGTIRQNIVYG-KEVATEAEIRKAAVLA 1093
G +++D + + Y R L +A V QEP +F ++++NI YG + T EI AAV +
Sbjct: 72 GQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKS 131
Query: 1094 NAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSAS-- 1151
AH FIS GYDT E G QLSGGQ+Q +ALARA+++ P +L+LD+ATSALD+ S
Sbjct: 132 GAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQL 191
Query: 1152 --ENLVQEALEKMMVGRTCVVVAHRLSTIQKADNIVVIKNGKVVEQGTQSSLLSMGNGGA 1209
E L+ E+ E+ R+ +++ LS +++AD+I+ ++ G + E GT L M G
Sbjct: 192 QVEQLLYESPERY--SRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQL--MEKKGC 247
Query: 1210 YYSLIKMQA 1218
Y+++++ A
Sbjct: 248 YWAMVQAPA 256
Score = 183 bits (464), Expect = 5e-46, Method: Composition-based stats.
Identities = 106/258 (41%), Positives = 154/258 (59%), Gaps = 24/258 (9%)
Query: 320 TLAYLRGEIEFKDVDFSYPTRPDTPTI-------------GLVGSSGSGKSTVISLLERF 366
T +L G ++F+DV F+YP RPD + LVG +GSGKSTV +LL+
Sbjct: 7 TPLHLEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNL 66
Query: 367 YDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFSTSIKENILIG---KPGASMETV 423
Y P G +LLDG + + + ++L Q+ V QEP +F S++ENI G KP +ME +
Sbjct: 67 YQPTGGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKP--TMEEI 124
Query: 424 VKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSA 483
AA + H FI L GY+T+V + G QLSGGQ+Q +A+ARALIR P +L+LD+ATSA
Sbjct: 125 TAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSA 184
Query: 484 LDAESERIVQEALDQASQ--GRTMIIIAHRLSTIRKADLIGVLQSGRVIESGSHDVLMQM 541
LDA S+ V++ L ++ + R++++I LS + +AD I L+ G + E G+H LM+
Sbjct: 185 LDANSQLQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLME- 243
Query: 542 NNGEGGAYSKMVQLQQSA 559
+ G Y MVQ A
Sbjct: 244 ---KKGCYWAMVQAPADA 258
>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUZ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
Length = 366
Score = 109 bits (273), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 80/245 (32%), Positives = 131/245 (53%), Gaps = 19/245 (7%)
Query: 970 IEEPTKGFIELKNV--FFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIE 1027
I++ K I+L N+ F +R Q + ++L + AG+ ++G SG+GKST+I +
Sbjct: 17 IDDDDKHMIKLSNITKVFHQGTRTIQAL-NNVSLHVPAGQIYGVIGASGAGKSTLIRCVN 75
Query: 1028 RFYDPQSGSVMVDERNIKSYN---LRKLRSCIALVSQEPTLFAG-TIRQNIVYGKEVATE 1083
P GSV+VD + + + + L K R I ++ Q L + T+ N+ E+
Sbjct: 76 LLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNT 135
Query: 1084 AEIRKAAVLANAHEFIS--STEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLD 1141
K V E +S D +D+Y LSGGQKQR+A+ARA+ NP +LL D
Sbjct: 136 P---KDEVKRRVTELLSLVGLGDKHDSYPS----NLSGGQKQRVAIARALASNPKVLLCD 188
Query: 1142 EATSALDSASENLVQEALEKM--MVGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQ 1198
+ATSALD A+ + E L+ + +G T +++ H + +++ D + VI NG+++EQ T
Sbjct: 189 QATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTV 248
Query: 1199 SSLLS 1203
S + S
Sbjct: 249 SEVFS 253
Score = 99.8 bits (247), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 64/195 (32%), Positives = 111/195 (56%), Gaps = 12/195 (6%)
Query: 347 GLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKL---QLKWLRSQMGLVNQE-PIL 402
G++G+SG+GKST+I + P +G++L+DG ++ L +L R Q+G++ Q +L
Sbjct: 58 GVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLL 117
Query: 403 FSTSIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRI 462
S ++ N+ + ++ K V + + + G K + LSGGQKQR+
Sbjct: 118 SSRTVFGNVALP---LELDNTPKDEVKRRVTELLSLV--GLGDKHDSYPSNLSGGQKQRV 172
Query: 463 AIARALIRDPKILLLDEATSALDAESERIVQEALDQASQ--GRTMIIIAHRLSTIRK-AD 519
AIARAL +PK+LL D+ATSALD + R + E L ++ G T+++I H + +++ D
Sbjct: 173 AIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICD 232
Query: 520 LIGVLQSGRVIESGS 534
+ V+ +G +IE +
Sbjct: 233 CVAVISNGELIEQDT 247
>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1
Nucleotide Binding Domain 1
Length = 237
Score = 108 bits (270), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 79/248 (31%), Positives = 130/248 (52%), Gaps = 26/248 (10%)
Query: 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSV 1037
I ++N F++ +R D G+T I G VA+VGQ G GKS+++ + D G V
Sbjct: 4 ITVRNATFTW-ARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHV 62
Query: 1038 MVDERNIKSYNLRKLRSCIALVSQEPTLFAGTIRQNIVYG---KEVATEAEIRKAAVLAN 1094
+ + +A V Q+ + ++R+NI++G +E + I+ A+L +
Sbjct: 63 AI-------------KGSVAYVPQQAWIQNDSLRENILFGCQLEEPYYRSVIQACALLPD 109
Query: 1095 AHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENL 1154
E + S G T GE+GV LSGGQKQR++LARAV N I L D+ SA+D+
Sbjct: 110 L-EILPS---GDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKH 165
Query: 1155 VQEAL---EKMMVGRTCVVVAHRLSTIQKADNIVVIKNGKVVEQGTQSSLLSMGNGGAYY 1211
+ E + + M+ +T ++V H +S + + D I+V+ GK+ E G+ LL+ GA+
Sbjct: 166 IFENVIGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLA--RDGAFA 223
Query: 1212 SLIKMQAS 1219
++ AS
Sbjct: 224 EFLRTYAS 231
Score = 87.8 bits (216), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 63/219 (28%), Positives = 113/219 (51%), Gaps = 25/219 (11%)
Query: 341 PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEP 400
P+ + +VG G GKS+++S L D V+G++ + G Q W+++
Sbjct: 29 PEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKGSVAYVPQQAWIQND-------- 80
Query: 401 ILFSTSIKENILIGKPGASMETVV--KAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQ 458
S++ENIL G +E QA + + L G T++G+ GV LSGGQ
Sbjct: 81 -----SLRENILFG---CQLEEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQ 132
Query: 459 KQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQAS---QGRTMIIIAHRLSTI 515
KQR+++ARA+ + I L D+ SA+DA + + E + + +T I++ H +S +
Sbjct: 133 KQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYL 192
Query: 516 RKADLIGVLQSGRVIESGSHDVLMQMNNGEGGAYSKMVQ 554
+ D+I V+ G++ E GS+ L+ + GA+++ ++
Sbjct: 193 PQVDVIIVMSGGKISEMGSYQELLARD----GAFAEFLR 227
>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|D Chain D, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|G Chain G, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|H Chain H, Crystal Structure Of Methionine Importer Metni
Length = 343
Score = 107 bits (267), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 79/238 (33%), Positives = 127/238 (53%), Gaps = 19/238 (7%)
Query: 977 FIELKNV--FFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQS 1034
I+L N+ F +R Q + ++L + AG+ ++G SG+GKST+I + P
Sbjct: 1 MIKLSNITKVFHQGTRTIQAL-NNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTE 59
Query: 1035 GSVMVDERNIKSYN---LRKLRSCIALVSQEPTLFAG-TIRQNIVYGKEVATEAEIRKAA 1090
GSV+VD + + + + L K R I ++ Q L + T+ N+ E+ K
Sbjct: 60 GSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTP---KDE 116
Query: 1091 VLANAHEFIS--STEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALD 1148
V E +S D +D+Y LSGGQKQR+A+ARA+ NP +LL DEATSALD
Sbjct: 117 VKRRVTELLSLVGLGDKHDSYPS----NLSGGQKQRVAIARALASNPKVLLCDEATSALD 172
Query: 1149 SASENLVQEALEKM--MVGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSLLS 1203
A+ + E L+ + +G T +++ H + +++ D + VI NG+++EQ T S + S
Sbjct: 173 PATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFS 230
Score = 100 bits (250), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 65/195 (33%), Positives = 111/195 (56%), Gaps = 12/195 (6%)
Query: 347 GLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKL---QLKWLRSQMGLVNQE-PIL 402
G++G+SG+GKST+I + P +G++L+DG ++ L +L R Q+G++ Q +L
Sbjct: 35 GVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLL 94
Query: 403 FSTSIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRI 462
S ++ N+ + ++ K V + + + G K + LSGGQKQR+
Sbjct: 95 SSRTVFGNVALP---LELDNTPKDEVKRRVTELLSLV--GLGDKHDSYPSNLSGGQKQRV 149
Query: 463 AIARALIRDPKILLLDEATSALDAESERIVQEALDQASQ--GRTMIIIAHRLSTIRK-AD 519
AIARAL +PK+LL DEATSALD + R + E L ++ G T+++I H + +++ D
Sbjct: 150 AIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICD 209
Query: 520 LIGVLQSGRVIESGS 534
+ V+ +G +IE +
Sbjct: 210 CVAVISNGELIEQDT 224
>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
pdb|3TUJ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
Length = 366
Score = 105 bits (263), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 80/245 (32%), Positives = 129/245 (52%), Gaps = 19/245 (7%)
Query: 970 IEEPTKGFIELKNV--FFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIE 1027
I++ K I+L N+ F +R Q + ++L + AG+ ++G SG+GKST+I +
Sbjct: 17 IDDDDKHXIKLSNITKVFHQGTRTIQAL-NNVSLHVPAGQIYGVIGASGAGKSTLIRCVN 75
Query: 1028 RFYDPQSGSVMVDERNIKSYN---LRKLRSCIALVSQEPTLFAG-TIRQNIVYGKEVATE 1083
P GSV+VD + + + + L K R I + Q L + T+ N+ E+
Sbjct: 76 LLERPTEGSVLVDGQELTTLSESELTKARRQIGXIFQHFNLLSSRTVFGNVALPLELDNT 135
Query: 1084 AEIRKAAVLANAHEFIS--STEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLD 1141
K V E +S D +D+Y LSGGQKQR+A+ARA+ NP +LL D
Sbjct: 136 P---KDEVKRRVTELLSLVGLGDKHDSYPS----NLSGGQKQRVAIARALASNPKVLLCD 188
Query: 1142 EATSALDSASENLVQEALEKM--MVGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQ 1198
+ATSALD A+ + E L+ + +G T +++ H +++ D + VI NG+++EQ T
Sbjct: 189 QATSALDPATTRSILELLKDINRRLGLTILLITHEXDVVKRICDCVAVISNGELIEQDTV 248
Query: 1199 SSLLS 1203
S + S
Sbjct: 249 SEVFS 253
Score = 97.1 bits (240), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 64/195 (32%), Positives = 109/195 (55%), Gaps = 12/195 (6%)
Query: 347 GLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKL---QLKWLRSQMGLVNQE-PIL 402
G++G+SG+GKST+I + P +G++L+DG ++ L +L R Q+G + Q +L
Sbjct: 58 GVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGXIFQHFNLL 117
Query: 403 FSTSIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRI 462
S ++ N+ + ++ K V + + + G K + LSGGQKQR+
Sbjct: 118 SSRTVFGNVALP---LELDNTPKDEVKRRVTELLSLV--GLGDKHDSYPSNLSGGQKQRV 172
Query: 463 AIARALIRDPKILLLDEATSALDAESERIVQEALDQASQ--GRTMIIIAHRLSTIRK-AD 519
AIARAL +PK+LL D+ATSALD + R + E L ++ G T+++I H +++ D
Sbjct: 173 AIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEXDVVKRICD 232
Query: 520 LIGVLQSGRVIESGS 534
+ V+ +G +IE +
Sbjct: 233 CVAVISNGELIEQDT 247
>pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|B Chain B, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|C Chain C, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|D Chain D, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
Length = 286
Score = 98.6 bits (244), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 71/226 (31%), Positives = 117/226 (51%), Gaps = 19/226 (8%)
Query: 982 NVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDE 1041
NV FS+ + K + L IE G+ +A+ G +GSGK++++ LI + G +
Sbjct: 40 NVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG 99
Query: 1042 RNIKSYNLRKLRSCIALVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVL--ANAHEFI 1099
R ++ SQ + GTI++NI++G + E R +V+ + I
Sbjct: 100 R-------------VSFCSQFSWIMPGTIKENIIFG---VSYDEYRYKSVVKACQLQQDI 143
Query: 1100 SSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEA- 1158
+ + +T GE GV LSGGQ+ RI+LARAV K+ + LLD LD +E V E+
Sbjct: 144 TKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESC 203
Query: 1159 LEKMMVGRTCVVVAHRLSTIQKADNIVVIKNGKVVEQGTQSSLLSM 1204
+ K+M +T ++V ++ ++KAD I+++ G GT S L S+
Sbjct: 204 VCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSL 249
Score = 73.6 bits (179), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 92/185 (49%), Gaps = 19/185 (10%)
Query: 346 IGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFST 405
+ + GS+GSGK++++ L+ + +G I G Q W+
Sbjct: 67 LAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFSWI-------------MPG 113
Query: 406 SIKENILIG--KPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIA 463
+IKENI+ G ++VVKA Q + I K + T +G+ GV LSGGQ+ RI+
Sbjct: 114 TIKENIIFGVSYDEYRYKSVVKACQ---LQQDITKFAEQDNTVLGEGGVTLSGGQRARIS 170
Query: 464 IARALIRDPKILLLDEATSALDA-ESERIVQEALDQASQGRTMIIIAHRLSTIRKADLIG 522
+ARA+ +D + LLD LD E++ + + + +T I++ ++ +RKAD I
Sbjct: 171 LARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKIL 230
Query: 523 VLQSG 527
+L G
Sbjct: 231 ILHQG 235
>pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|B Chain B, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|C Chain C, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|D Chain D, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1R0W|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0X|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0Y|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R10|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
pdb|1R10|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
Length = 286
Score = 98.6 bits (244), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 71/226 (31%), Positives = 117/226 (51%), Gaps = 19/226 (8%)
Query: 982 NVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDE 1041
NV FS+ + K + L IE G+ +A+ G +GSGK++++ LI + G +
Sbjct: 40 NVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG 99
Query: 1042 RNIKSYNLRKLRSCIALVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVL--ANAHEFI 1099
R ++ SQ + GTI++NI++G + E R +V+ + I
Sbjct: 100 R-------------VSFCSQFSWIMPGTIKENIIFG---VSYDEYRYKSVVKACQLQQDI 143
Query: 1100 SSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEA- 1158
+ + +T GE GV LSGGQ+ RI+LARAV K+ + LLD LD +E V E+
Sbjct: 144 TKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESC 203
Query: 1159 LEKMMVGRTCVVVAHRLSTIQKADNIVVIKNGKVVEQGTQSSLLSM 1204
+ K+M +T ++V ++ ++KAD I+++ G GT S L S+
Sbjct: 204 VCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSL 249
Score = 73.9 bits (180), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 92/185 (49%), Gaps = 19/185 (10%)
Query: 346 IGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFST 405
+ + GS+GSGK++++ L+ + +G I G Q W+
Sbjct: 67 LAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFSWI-------------MPG 113
Query: 406 SIKENILIG--KPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIA 463
+IKENI+ G ++VVKA Q + I K + T +G+ GV LSGGQ+ RI+
Sbjct: 114 TIKENIIFGVSYDEYRYKSVVKACQ---LQQDITKFAEQDNTVLGEGGVTLSGGQRARIS 170
Query: 464 IARALIRDPKILLLDEATSALDA-ESERIVQEALDQASQGRTMIIIAHRLSTIRKADLIG 522
+ARA+ +D + LLD LD E++ + + + +T I++ ++ +RKAD I
Sbjct: 171 LARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKIL 230
Query: 523 VLQSG 527
+L G
Sbjct: 231 ILHQG 235
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 97.4 bits (241), Expect = 4e-20, Method: Composition-based stats.
Identities = 73/205 (35%), Positives = 110/205 (53%), Gaps = 15/205 (7%)
Query: 999 LTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIAL 1058
+ LKI+ G+ +AL+G SGSGKST++ I Y P SG + DE+++ L + L
Sbjct: 22 INLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTE--LPPKDRNVGL 79
Query: 1059 VSQEPTLFAG-TIRQNIVYGKEV--ATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGV 1115
V Q L+ T+ +NI + E+ A EI K I + Y
Sbjct: 80 VFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPW------- 132
Query: 1116 QLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMM--VGRTCVVVAH 1173
QLSGGQ+QR+A+ARA++K P +LLLDE S LD+ V+ L+++ +G T V V H
Sbjct: 133 QLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTH 192
Query: 1174 -RLSTIQKADNIVVIKNGKVVEQGT 1197
+ + AD I VI+ G++++ GT
Sbjct: 193 DQAEALAMADRIAVIREGEILQVGT 217
Score = 85.5 bits (210), Expect = 2e-16, Method: Composition-based stats.
Identities = 69/204 (33%), Positives = 106/204 (51%), Gaps = 21/204 (10%)
Query: 342 DTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPI 401
D + L+G SGSGKST++ + Y P G I D + +L K +GLV Q
Sbjct: 28 DGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPK--DRNVGLVFQNWA 85
Query: 402 LFS-TSIKENI-----LIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLS 455
L+ ++ +NI L P ++ V+ A +H I KL + ++ QLS
Sbjct: 86 LYPHMTVYKNIAFPLELRKAPREEIDKKVREV-AKMLH--IDKL-------LNRYPWQLS 135
Query: 456 GGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALD--QASQGRTMIIIAH-RL 512
GGQ+QR+AIARAL+++P++LLLDE S LDA V+ L Q G T + + H +
Sbjct: 136 GGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQA 195
Query: 513 STIRKADLIGVLQSGRVIESGSHD 536
+ AD I V++ G +++ G+ D
Sbjct: 196 EALAMADRIAVIREGEILQVGTPD 219
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 96.7 bits (239), Expect = 7e-20, Method: Composition-based stats.
Identities = 77/230 (33%), Positives = 123/230 (53%), Gaps = 23/230 (10%)
Query: 978 IELKNVFFSYPSRPDQMIF--KGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSG 1035
I+LKNV +Y +++I+ K + L I+ G+ V++ G SGSGKST + +I P G
Sbjct: 2 IKLKNVTKTY-KXGEEIIYALKNVNLNIKEGEFVSIXGPSGSGKSTXLNIIGCLDKPTEG 60
Query: 1036 SVMVDERNIKSYNL------RKLRSCIALVSQE----PTLFA-GTIRQNIVYGKEVATEA 1084
V +D NIK+ +L + R I V Q+ P L A + +++ A
Sbjct: 61 EVYID--NIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAXSG 118
Query: 1085 EIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEAT 1144
E R+ L E + E + + + QLSGGQ+QR+A+ARA+ NP I+L DE T
Sbjct: 119 EERRKRAL----ECLKXAEL-EERFANHKPNQLSGGQQQRVAIARALANNPPIILADEPT 173
Query: 1145 SALDSASENLVQEALEKMMV--GRTCVVVAHRLSTIQKADNIVVIKNGKV 1192
ALDS + + + L+K+ G+T VVV H ++ + + I+ +K+G+V
Sbjct: 174 GALDSKTGEKIXQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEV 223
Score = 79.7 bits (195), Expect = 1e-14, Method: Composition-based stats.
Identities = 59/194 (30%), Positives = 99/194 (51%), Gaps = 14/194 (7%)
Query: 346 IGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQ----LKWLRSQMGLVNQE-- 399
+ + G SGSGKST ++++ P +G + +D K L K R ++G V Q+
Sbjct: 34 VSIXGPSGSGKSTXLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFN 93
Query: 400 --PILFSTSIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGG 457
P+L + E LI K + + +A +K + E QLSGG
Sbjct: 94 LIPLLTALENVELPLIFKYRGAXSGEERRKRALEC----LKXAELEERFANHKPNQLSGG 149
Query: 458 QKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQASQ--GRTMIIIAHRLSTI 515
Q+QR+AIARAL +P I+L DE T ALD+++ + + L + ++ G+T++++ H ++
Sbjct: 150 QQQRVAIARALANNPPIILADEPTGALDSKTGEKIXQLLKKLNEEDGKTVVVVTHDINVA 209
Query: 516 RKADLIGVLQSGRV 529
R + I L+ G V
Sbjct: 210 RFGERIIYLKDGEV 223
>pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant
pdb|1XFA|B Chain B, Structure Of Nbd1 From Murine Cftr- F508r Mutant
Length = 283
Score = 96.3 bits (238), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 71/226 (31%), Positives = 116/226 (51%), Gaps = 19/226 (8%)
Query: 982 NVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDE 1041
NV FS+ + K + L IE G+ +A+ G +GSGK++++ LI + G +
Sbjct: 40 NVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG 99
Query: 1042 RNIKSYNLRKLRSCIALVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVL--ANAHEFI 1099
R ++ SQ + GTI++NI+ G + E R +V+ + I
Sbjct: 100 R-------------VSFCSQFSWIMPGTIKENIIRG---VSYDEYRYKSVVKACQLQQDI 143
Query: 1100 SSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEA- 1158
+ + +T GE GV LSGGQ+ RI+LARAV K+ + LLD LD +E V E+
Sbjct: 144 TKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESC 203
Query: 1159 LEKMMVGRTCVVVAHRLSTIQKADNIVVIKNGKVVEQGTQSSLLSM 1204
+ K+M +T ++V ++ ++KAD I+++ G GT S L S+
Sbjct: 204 VCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSL 249
Score = 72.4 bits (176), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 92/185 (49%), Gaps = 19/185 (10%)
Query: 346 IGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFST 405
+ + GS+GSGK++++ L+ + +G I G Q W+
Sbjct: 67 LAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFSWI-------------MPG 113
Query: 406 SIKENILIG--KPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIA 463
+IKENI+ G ++VVKA Q + I K + T +G+ GV LSGGQ+ RI+
Sbjct: 114 TIKENIIRGVSYDEYRYKSVVKACQ---LQQDITKFAEQDNTVLGEGGVTLSGGQRARIS 170
Query: 464 IARALIRDPKILLLDEATSALDA-ESERIVQEALDQASQGRTMIIIAHRLSTIRKADLIG 522
+ARA+ +D + LLD LD E++ + + + +T I++ ++ +RKAD I
Sbjct: 171 LARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKIL 230
Query: 523 VLQSG 527
+L G
Sbjct: 231 ILHQG 235
>pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
pdb|2PZE|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
Length = 229
Score = 96.3 bits (238), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 63/208 (30%), Positives = 105/208 (50%), Gaps = 15/208 (7%)
Query: 995 IFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRS 1054
+ K + KIE G+ +A+ G +G+GK++++ +I +P G + R
Sbjct: 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGR------------ 70
Query: 1055 CIALVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERG 1114
I+ SQ + GTI++NI++G E R E IS + + GE G
Sbjct: 71 -ISFCSQFSWIMPGTIKENIIFGVSY-DEYRYRSVIKACQLEEDISKFAEKDNIVLGEGG 128
Query: 1115 VQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASEN-LVQEALEKMMVGRTCVVVAH 1173
+ LSGGQ+ RI+LARAV K+ + LLD LD +E + + + K+M +T ++V
Sbjct: 129 ITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTS 188
Query: 1174 RLSTIQKADNIVVIKNGKVVEQGTQSSL 1201
++ ++KAD I+++ G GT S L
Sbjct: 189 KMEHLKKADKILILHEGSSYFYGTFSEL 216
Score = 72.8 bits (177), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 98/201 (48%), Gaps = 22/201 (10%)
Query: 330 FKDVDFSYPTRPDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWL 389
KD++F + + GS+G+GK++++ ++ +P +G I G Q W+
Sbjct: 24 LKDINFKIER---GQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWI 80
Query: 390 RSQMGLVNQEPILFSTSIKENILIG--KPGASMETVVKAAQAANVHDFIMKLNDGYETKV 447
+IKENI+ G +V+KA Q + + I K + +
Sbjct: 81 -------------MPGTIKENIIFGVSYDEYRYRSVIKACQ---LEEDISKFAEKDNIVL 124
Query: 448 GQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESER-IVQEALDQASQGRTMI 506
G+ G+ LSGGQ+ RI++ARA+ +D + LLD LD +E+ I + + + +T I
Sbjct: 125 GEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRI 184
Query: 507 IIAHRLSTIRKADLIGVLQSG 527
++ ++ ++KAD I +L G
Sbjct: 185 LVTSKMEHLKKADKILILHEG 205
>pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
pdb|2PZG|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
Length = 241
Score = 96.3 bits (238), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 63/211 (29%), Positives = 107/211 (50%), Gaps = 15/211 (7%)
Query: 995 IFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRS 1054
+ K + KIE G+ +A+ G +G+GK++++ +I +P G + R
Sbjct: 35 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGR------------ 82
Query: 1055 CIALVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERG 1114
I+ SQ + GTI++NI++G E R E IS + + GE G
Sbjct: 83 -ISFCSQFSWIMPGTIKENIIFGVSY-DEYRYRSVIKACQLEEDISKFAEKDNIVLGEGG 140
Query: 1115 VQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASEN-LVQEALEKMMVGRTCVVVAH 1173
+ LSGGQ+ RI+LARAV K+ + LLD LD +E + + + K+M +T ++V
Sbjct: 141 ITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTS 200
Query: 1174 RLSTIQKADNIVVIKNGKVVEQGTQSSLLSM 1204
++ ++KAD I+++ G GT S L ++
Sbjct: 201 KMEHLKKADKILILHEGSSYFYGTFSELQNL 231
Score = 72.8 bits (177), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 98/201 (48%), Gaps = 22/201 (10%)
Query: 330 FKDVDFSYPTRPDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWL 389
KD++F + + GS+G+GK++++ ++ +P +G I G Q W+
Sbjct: 36 LKDINFKIER---GQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWI 92
Query: 390 RSQMGLVNQEPILFSTSIKENILIG--KPGASMETVVKAAQAANVHDFIMKLNDGYETKV 447
+IKENI+ G +V+KA Q + + I K + +
Sbjct: 93 -------------MPGTIKENIIFGVSYDEYRYRSVIKACQ---LEEDISKFAEKDNIVL 136
Query: 448 GQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESER-IVQEALDQASQGRTMI 506
G+ G+ LSGGQ+ RI++ARA+ +D + LLD LD +E+ I + + + +T I
Sbjct: 137 GEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRI 196
Query: 507 IIAHRLSTIRKADLIGVLQSG 527
++ ++ ++KAD I +L G
Sbjct: 197 LVTSKMEHLKKADKILILHEG 217
>pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|B Chain B, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|C Chain C, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|D Chain D, Structure Of Nbd1 From Murine Cftr- F508s Mutant
Length = 283
Score = 96.3 bits (238), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 71/226 (31%), Positives = 116/226 (51%), Gaps = 19/226 (8%)
Query: 982 NVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDE 1041
NV FS+ + K + L IE G+ +A+ G +GSGK++++ LI + G +
Sbjct: 40 NVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG 99
Query: 1042 RNIKSYNLRKLRSCIALVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVL--ANAHEFI 1099
R ++ SQ + GTI++NI+ G + E R +V+ + I
Sbjct: 100 R-------------VSFCSQFSWIMPGTIKENIISG---VSYDEYRYKSVVKACQLQQDI 143
Query: 1100 SSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEA- 1158
+ + +T GE GV LSGGQ+ RI+LARAV K+ + LLD LD +E V E+
Sbjct: 144 TKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESC 203
Query: 1159 LEKMMVGRTCVVVAHRLSTIQKADNIVVIKNGKVVEQGTQSSLLSM 1204
+ K+M +T ++V ++ ++KAD I+++ G GT S L S+
Sbjct: 204 VCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSL 249
Score = 72.8 bits (177), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 92/185 (49%), Gaps = 19/185 (10%)
Query: 346 IGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFST 405
+ + GS+GSGK++++ L+ + +G I G Q W+
Sbjct: 67 LAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFSWI-------------MPG 113
Query: 406 SIKENILIG--KPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIA 463
+IKENI+ G ++VVKA Q + I K + T +G+ GV LSGGQ+ RI+
Sbjct: 114 TIKENIISGVSYDEYRYKSVVKACQ---LQQDITKFAEQDNTVLGEGGVTLSGGQRARIS 170
Query: 464 IARALIRDPKILLLDEATSALDA-ESERIVQEALDQASQGRTMIIIAHRLSTIRKADLIG 522
+ARA+ +D + LLD LD E++ + + + +T I++ ++ +RKAD I
Sbjct: 171 LARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKIL 230
Query: 523 VLQSG 527
+L G
Sbjct: 231 ILHQG 235
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 95.5 bits (236), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 76/231 (32%), Positives = 125/231 (54%), Gaps = 23/231 (9%)
Query: 977 FIELKNVFFSYPSRPDQMIF--KGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQS 1034
I+LKNV +Y +++I+ K + L I+ G+ V+++G SGSGKST++ +I P
Sbjct: 1 MIKLKNVTKTY-KMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTE 59
Query: 1035 GSVMVDERNIKSYNL------RKLRSCIALVSQE----PTLFA-GTIRQNIVYGKEVATE 1083
G V +D NIK+ +L + R I V Q+ P L A + +++ A
Sbjct: 60 GEVYID--NIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMS 117
Query: 1084 AEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEA 1143
E R+ L E + E + + + QLSGGQ+QR+A+ARA+ NP I+L D+
Sbjct: 118 GEERRKRAL----ECLKMAE-LEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQP 172
Query: 1144 TSALDSASENLVQEALEKMMV--GRTCVVVAHRLSTIQKADNIVVIKNGKV 1192
T ALDS + + + L+K+ G+T VVV H ++ + + I+ +K+G+V
Sbjct: 173 TGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEV 223
Score = 80.9 bits (198), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 59/194 (30%), Positives = 103/194 (53%), Gaps = 14/194 (7%)
Query: 346 IGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQ----LKWLRSQMGLVNQE-- 399
+ ++G SGSGKST+++++ P +G + +D K L K R ++G V Q+
Sbjct: 34 VSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFN 93
Query: 400 --PILFSTSIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGG 457
P+L + E LI K +M + +A +K+ + E QLSGG
Sbjct: 94 LIPLLTALENVELPLIFKYRGAMSGEERRKRALEC----LKMAELEERFANHKPNQLSGG 149
Query: 458 QKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQASQ--GRTMIIIAHRLSTI 515
Q+QR+AIARAL +P I+L D+ T ALD+++ + + L + ++ G+T++++ H ++
Sbjct: 150 QQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVA 209
Query: 516 RKADLIGVLQSGRV 529
R + I L+ G V
Sbjct: 210 RFGERIIYLKDGEV 223
>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The
Abc Transporter Complex Cbionq
Length = 275
Score = 95.1 bits (235), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 66/217 (30%), Positives = 111/217 (51%), Gaps = 16/217 (7%)
Query: 996 FKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIK--SYNLRKLR 1053
KG+ + I+ G+ A++G +G GKST+ P SG ++ D + I + KLR
Sbjct: 24 LKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLR 83
Query: 1054 SCIALVSQEPT--LFAGTIRQNIVYG--KEVATEAEIRKAAVLANAHEFISSTEDGYDTY 1109
I +V Q+P LF+ ++ Q++ +G E EIRK A I +D T+
Sbjct: 84 ESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKD-KPTH 142
Query: 1110 CGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMM--VGRT 1167
C LS GQK+R+A+A ++ P +L+LDE T+ LD + + + L +M +G T
Sbjct: 143 C------LSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGIT 196
Query: 1168 CVVVAHRLSTIQ-KADNIVVIKNGKVVEQGTQSSLLS 1203
++ H + + DN+ V+K G+V+ QG + +
Sbjct: 197 IIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFA 233
Score = 70.1 bits (170), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 63/202 (31%), Positives = 97/202 (48%), Gaps = 28/202 (13%)
Query: 348 LVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIK--KLQLKWLRSQMGLVNQEPI--LF 403
++G +G GKST+ P G IL D I + + LR +G+V Q+P LF
Sbjct: 39 ILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLF 98
Query: 404 STSIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQ------LSGG 457
S S+ +++ G A D I K D + G ++ LS G
Sbjct: 99 SASVYQDVSFG-----------AVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFG 147
Query: 458 QKQRIAIARALIRDPKILLLDEATSALD----AESERIVQEALDQASQGRTMIIIAHRLS 513
QK+R+AIA L+ +PK+L+LDE T+ LD +E +++ E Q G T+II H +
Sbjct: 148 QKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEM--QKELGITIIIATHDID 205
Query: 514 TIR-KADLIGVLQSGRVIESGS 534
+ D + V++ GRVI G+
Sbjct: 206 IVPLYCDNVFVMKEGRVILQGN 227
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 95.1 bits (235), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 72/219 (32%), Positives = 106/219 (48%), Gaps = 19/219 (8%)
Query: 995 IFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSY--NLRKL 1052
+ KG+ + I G+ V ++G SGSGKST + + D G +++D N+K+ NL K+
Sbjct: 39 VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKV 98
Query: 1053 RSCIALVSQEPTLFAG-TIRQNIVYGKEVATEAEIRKAAVLANAHEFISST--EDGYDTY 1109
R + +V Q LF T+ NI + KA A A E + +D Y
Sbjct: 99 REEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAE--AKAMELLDKVGLKDKAHAY 156
Query: 1110 CGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMM----VG 1165
LSGGQ QR+A+ARA+ P I+L DE TSALD +V E L M G
Sbjct: 157 PD----SLSGGQAQRVAIARALAMEPKIMLFDEPTSALDP---EMVGEVLSVMKQLANEG 209
Query: 1166 RTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSLLS 1203
T VVV H + ++ D ++ + G ++E+G L
Sbjct: 210 MTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFD 248
Score = 93.2 bits (230), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 72/198 (36%), Positives = 103/198 (52%), Gaps = 13/198 (6%)
Query: 348 LVGSSGSGKSTVISLLERFYDPVKGNILLDG--HKIKKLQLKWLRSQMGLVNQEPILFS- 404
++G SGSGKST + L D +G I++DG K K L +R ++G+V Q LF
Sbjct: 55 VIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFPH 114
Query: 405 TSIKENILIGKPGASMETVVKAAQAANVHDFIMKLND--GYETKVGQFGVQLSGGQKQRI 462
++ NI + KA A M+L D G + K + LSGGQ QR+
Sbjct: 115 MTVLNNITLAPMKVRKWPREKAEAKA------MELLDKVGLKDKAHAYPDSLSGGQAQRV 168
Query: 463 AIARALIRDPKILLLDEATSALDAESERIVQEALDQ-ASQGRTMIIIAHRLSTIRK-ADL 520
AIARAL +PKI+L DE TSALD E V + Q A++G TM+++ H + R+ D
Sbjct: 169 AIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDR 228
Query: 521 IGVLQSGRVIESGSHDVL 538
+ + G +IE G + L
Sbjct: 229 VLFMDGGYIIEEGKPEDL 246
>pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations.
pdb|2BBT|B Chain B, Human Deltaf508 Nbd1 With Two Solublizing Mutations
Length = 290
Score = 94.7 bits (234), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 67/226 (29%), Positives = 115/226 (50%), Gaps = 20/226 (8%)
Query: 982 NVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDE 1041
++FFS S + K + KIE G+ +A+ G +G+GK++++ +I +P G +
Sbjct: 40 SLFFSNFSLLGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG 99
Query: 1042 RNIKSYNLRKLRSCIALVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVL--ANAHEFI 1099
R I+ SQ + GTI++NI+ + E R +V+ E I
Sbjct: 100 R-------------ISFCSQNSWIMPGTIKENII----GVSYDEYRYRSVIKACQLEEDI 142
Query: 1100 SSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASE-NLVQEA 1158
S + + GE G+ LSGGQ+ RI+LARAV K+ + LLD LD +E + +
Sbjct: 143 SKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESC 202
Query: 1159 LEKMMVGRTCVVVAHRLSTIQKADNIVVIKNGKVVEQGTQSSLLSM 1204
+ K+M +T ++V ++ ++KAD I+++ G GT S L ++
Sbjct: 203 VCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNL 248
Score = 72.8 bits (177), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 56/218 (25%), Positives = 107/218 (49%), Gaps = 21/218 (9%)
Query: 312 NSEDEIGKTLAYLRGEIEFKDVDFSYPTRPDTPTIGLVGSSGSGKSTVISLLERFYDPVK 371
N +D + + L G KD++F + + GS+G+GK++++ ++ +P +
Sbjct: 36 NGDDSLFFSNFSLLGTPVLKDINFKIER---GQLLAVAGSTGAGKTSLLMMIMGELEPSE 92
Query: 372 GNILLDGHKIKKLQLKWLRSQMGLVNQEPILFSTSIKENIL-IGKPGASMETVVKAAQAA 430
G I G ++ +Q + +IKENI+ + +V+KA Q
Sbjct: 93 GKIKHSG-------------RISFCSQNSWIMPGTIKENIIGVSYDEYRYRSVIKACQ-- 137
Query: 431 NVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESER 490
+ + I K + +G+ G+ LSGGQ+ RI++ARA+ +D + LLD LD +E+
Sbjct: 138 -LEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEK 196
Query: 491 -IVQEALDQASQGRTMIIIAHRLSTIRKADLIGVLQSG 527
I + + + +T I++ ++ ++KAD I +L G
Sbjct: 197 EIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEG 234
>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+
pdb|3C41|K Chain K, Abc Protein Artp In Complex With Amp-PnpMG2+
Length = 242
Score = 94.7 bits (234), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 72/219 (32%), Positives = 106/219 (48%), Gaps = 19/219 (8%)
Query: 995 IFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSY--NLRKL 1052
+ KG+ + I G+ V ++G SGSGKST + + D G +++D N+K+ NL K+
Sbjct: 18 VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKV 77
Query: 1053 RSCIALVSQEPTLFAG-TIRQNIVYGKEVATEAEIRKAAVLANAHEFISST--EDGYDTY 1109
R + +V Q LF T+ NI + KA A A E + +D Y
Sbjct: 78 REEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAE--AKAMELLDKVGLKDKAHAY 135
Query: 1110 CGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMM----VG 1165
LSGGQ QR+A+ARA+ P I+L DE TSALD +V E L M G
Sbjct: 136 PD----SLSGGQAQRVAIARALAMEPKIMLFDEPTSALDP---EMVGEVLSVMKQLANEG 188
Query: 1166 RTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSLLS 1203
T VVV H + ++ D ++ + G ++E+G L
Sbjct: 189 MTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFD 227
Score = 93.2 bits (230), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 72/198 (36%), Positives = 103/198 (52%), Gaps = 13/198 (6%)
Query: 348 LVGSSGSGKSTVISLLERFYDPVKGNILLDG--HKIKKLQLKWLRSQMGLVNQEPILFS- 404
++G SGSGKST + L D +G I++DG K K L +R ++G+V Q LF
Sbjct: 34 VIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFPH 93
Query: 405 TSIKENILIGKPGASMETVVKAAQAANVHDFIMKLND--GYETKVGQFGVQLSGGQKQRI 462
++ NI + KA A M+L D G + K + LSGGQ QR+
Sbjct: 94 MTVLNNITLAPMKVRKWPREKAEAKA------MELLDKVGLKDKAHAYPDSLSGGQAQRV 147
Query: 463 AIARALIRDPKILLLDEATSALDAESERIVQEALDQ-ASQGRTMIIIAHRLSTIRK-ADL 520
AIARAL +PKI+L DE TSALD E V + Q A++G TM+++ H + R+ D
Sbjct: 148 AIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDR 207
Query: 521 IGVLQSGRVIESGSHDVL 538
+ + G +IE G + L
Sbjct: 208 VLFMDGGYIIEEGKPEDL 225
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 94.4 bits (233), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 75/231 (32%), Positives = 125/231 (54%), Gaps = 23/231 (9%)
Query: 977 FIELKNVFFSYPSRPDQMIF--KGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQS 1034
++LKNV +Y +++I+ K + L I+ G+ V+++G SGSGKST++ +I P
Sbjct: 1 MVKLKNVTKTY-KMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTE 59
Query: 1035 GSVMVDERNIKSYNL------RKLRSCIALVSQE----PTLFA-GTIRQNIVYGKEVATE 1083
G V +D NIK+ +L + R I V Q+ P L A + +++ A
Sbjct: 60 GEVYID--NIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMS 117
Query: 1084 AEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEA 1143
E R+ L E + E + + + QLSGGQ+QR+A+ARA+ NP I+L D+
Sbjct: 118 GEERRKRAL----ECLKMAE-LEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQP 172
Query: 1144 TSALDSASENLVQEALEKMMV--GRTCVVVAHRLSTIQKADNIVVIKNGKV 1192
T ALDS + + + L+K+ G+T VVV H ++ + + I+ +K+G+V
Sbjct: 173 TWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEV 223
Score = 80.1 bits (196), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 59/194 (30%), Positives = 103/194 (53%), Gaps = 14/194 (7%)
Query: 346 IGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQ----LKWLRSQMGLVNQE-- 399
+ ++G SGSGKST+++++ P +G + +D K L K R ++G V Q+
Sbjct: 34 VSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFN 93
Query: 400 --PILFSTSIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGG 457
P+L + E LI K +M + +A +K+ + E QLSGG
Sbjct: 94 LIPLLTALENVELPLIFKYRGAMSGEERRKRALEC----LKMAELEERFANHKPNQLSGG 149
Query: 458 QKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQASQ--GRTMIIIAHRLSTI 515
Q+QR+AIARAL +P I+L D+ T ALD+++ + + L + ++ G+T++++ H ++
Sbjct: 150 QQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVA 209
Query: 516 RKADLIGVLQSGRV 529
R + I L+ G V
Sbjct: 210 RFGERIIYLKDGEV 223
>pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|B Chain B, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|C Chain C, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|D Chain D, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|E Chain E, Crystal Structure Of Human F508a Nbd1 Domain With Atp
Length = 291
Score = 94.4 bits (233), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 63/211 (29%), Positives = 106/211 (50%), Gaps = 15/211 (7%)
Query: 995 IFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRS 1054
+ K + KIE G+ +A+ G +G+GK++++ +I +P G + R
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGR------------ 100
Query: 1055 CIALVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERG 1114
I+ SQ + GTI++NI+ G E R E IS + + GE G
Sbjct: 101 -ISFCSQFSWIMPGTIKENIIAGVSY-DEYRYRSVIKACQLEEDISKFAEKDNIVLGEGG 158
Query: 1115 VQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASE-NLVQEALEKMMVGRTCVVVAH 1173
+ LSGGQ+ RI+LARAV K+ + LLD LD +E + + + K+M +T ++V
Sbjct: 159 ITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTS 218
Query: 1174 RLSTIQKADNIVVIKNGKVVEQGTQSSLLSM 1204
++ ++KAD I+++ G GT S L ++
Sbjct: 219 KMEHLKKADKILILHEGSSYFYGTFSELQNL 249
Score = 73.6 bits (179), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 58/219 (26%), Positives = 105/219 (47%), Gaps = 22/219 (10%)
Query: 312 NSEDEIGKTLAYLRGEIEFKDVDFSYPTRPDTPTIGLVGSSGSGKSTVISLLERFYDPVK 371
N +D + + L G KD++F + + GS+G+GK++++ ++ +P +
Sbjct: 36 NGDDSLSFSNFSLLGTPVLKDINFKIER---GQLLAVAGSTGAGKTSLLMMIMGELEPSE 92
Query: 372 GNILLDGHKIKKLQLKWLRSQMGLVNQEPILFSTSIKENILIG--KPGASMETVVKAAQA 429
G I G Q W+ +IKENI+ G +V+KA Q
Sbjct: 93 GKIKHSGRISFCSQFSWI-------------MPGTIKENIIAGVSYDEYRYRSVIKACQ- 138
Query: 430 ANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESE 489
+ + I K + +G+ G+ LSGGQ+ RI++ARA+ +D + LLD LD +E
Sbjct: 139 --LEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTE 196
Query: 490 R-IVQEALDQASQGRTMIIIAHRLSTIRKADLIGVLQSG 527
+ I + + + +T I++ ++ ++KAD I +L G
Sbjct: 197 KEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEG 235
>pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|B Chain B, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|C Chain C, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|D Chain D, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
Length = 285
Score = 92.8 bits (229), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 70/226 (30%), Positives = 115/226 (50%), Gaps = 20/226 (8%)
Query: 982 NVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDE 1041
NV FS+ + K + L IE G+ +A+ G +GSGK++++ LI + G +
Sbjct: 40 NVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG 99
Query: 1042 RNIKSYNLRKLRSCIALVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVL--ANAHEFI 1099
R ++ SQ + GTI++NI+ + E R +V+ + I
Sbjct: 100 R-------------VSFCSQFSWIMPGTIKENII----GVSYDEYRYKSVVKACQLQQDI 142
Query: 1100 SSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEA- 1158
+ + +T GE GV LSGGQ+ RI+LARAV K+ + LLD LD +E V E+
Sbjct: 143 TKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESC 202
Query: 1159 LEKMMVGRTCVVVAHRLSTIQKADNIVVIKNGKVVEQGTQSSLLSM 1204
+ K+M +T ++V ++ ++KAD I+++ G GT S L S+
Sbjct: 203 VCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSL 248
Score = 72.4 bits (176), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/184 (29%), Positives = 92/184 (50%), Gaps = 18/184 (9%)
Query: 346 IGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFST 405
+ + GS+GSGK++++ L+ + +G I G Q W+
Sbjct: 67 LAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFSWI-------------MPG 113
Query: 406 SIKENIL-IGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAI 464
+IKENI+ + ++VVKA Q + I K + T +G+ GV LSGGQ+ RI++
Sbjct: 114 TIKENIIGVSYDEYRYKSVVKACQ---LQQDITKFAEQDNTVLGEGGVTLSGGQRARISL 170
Query: 465 ARALIRDPKILLLDEATSALDA-ESERIVQEALDQASQGRTMIIIAHRLSTIRKADLIGV 523
ARA+ +D + LLD LD E++ + + + +T I++ ++ +RKAD I +
Sbjct: 171 ARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILI 230
Query: 524 LQSG 527
L G
Sbjct: 231 LHQG 234
>pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|B Chain B, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|C Chain C, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|D Chain D, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
Length = 390
Score = 92.4 bits (228), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 63/231 (27%), Positives = 113/231 (48%), Gaps = 3/231 (1%)
Query: 962 EDPKASEDIEEPTKGFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKST 1021
E+ +D P+ G + +K++ Y + I + ++ I G+ V L+G++GSGKST
Sbjct: 4 ENSHVKKDDIWPSGGQMTVKDLTAKY-TEGGNAILENISFSISPGQRVGLLGRTGSGKST 62
Query: 1022 IIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIALVSQEPTLFAGTIRQNIVYGKEVA 1081
++ R + + G + +D + S L + R ++ Q+ +F+GT R+N+
Sbjct: 63 LLSAFLRLLNTE-GEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKNL-DPNAAH 120
Query: 1082 TEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLD 1141
++ EI K A I D + G LS G KQ + LAR+VL ILLLD
Sbjct: 121 SDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLD 180
Query: 1142 EATSALDSASENLVQEALEKMMVGRTCVVVAHRLSTIQKADNIVVIKNGKV 1192
E ++ LD + +++ L++ T ++ R+ + + D +VI+ KV
Sbjct: 181 EPSAHLDPVTYQIIRRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKV 231
Score = 81.6 bits (200), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/186 (29%), Positives = 98/186 (52%), Gaps = 6/186 (3%)
Query: 346 IGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFST 405
+GL+G +GSGKST++S R + +G I +DG + L+ R G++ Q+ +FS
Sbjct: 50 VGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSG 108
Query: 406 SIKENILIGKPGA--SMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIA 463
+ ++N+ P A S + + K A + I + + + G LS G KQ +
Sbjct: 109 TFRKNL---DPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMC 165
Query: 464 IARALIRDPKILLLDEATSALDAESERIVQEALDQASQGRTMIIIAHRLSTIRKADLIGV 523
+AR+++ KILLLDE ++ LD + +I++ L QA T+I+ R+ + + D V
Sbjct: 166 LARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEARIEAMLECDQFLV 225
Query: 524 LQSGRV 529
++ +V
Sbjct: 226 IEENKV 231
>pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
pdb|2BBS|B Chain B, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
Length = 290
Score = 92.4 bits (228), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 63/213 (29%), Positives = 109/213 (51%), Gaps = 20/213 (9%)
Query: 995 IFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRS 1054
+ K + KIE G+ +A+ G +G+GK++++ +I +P G + R
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGR------------ 100
Query: 1055 CIALVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVL--ANAHEFISSTEDGYDTYCGE 1112
I+ SQ + GTI++NI+ + E R +V+ E IS + + GE
Sbjct: 101 -ISFCSQNSWIMPGTIKENII----GVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGE 155
Query: 1113 RGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASEN-LVQEALEKMMVGRTCVVV 1171
G+ LSGGQ+ RI+LARAV K+ + LLD LD +E + + + K+M +T ++V
Sbjct: 156 GGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILV 215
Query: 1172 AHRLSTIQKADNIVVIKNGKVVEQGTQSSLLSM 1204
++ ++KAD I+++ G GT S L ++
Sbjct: 216 TSKMEHLKKADKILILHEGSSYFYGTFSELQNL 248
Score = 73.9 bits (180), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 56/218 (25%), Positives = 107/218 (49%), Gaps = 21/218 (9%)
Query: 312 NSEDEIGKTLAYLRGEIEFKDVDFSYPTRPDTPTIGLVGSSGSGKSTVISLLERFYDPVK 371
N +D + + L G KD++F + + GS+G+GK++++ ++ +P +
Sbjct: 36 NGDDSLSFSNFSLLGTPVLKDINFKIER---GQLLAVAGSTGAGKTSLLMMIMGELEPSE 92
Query: 372 GNILLDGHKIKKLQLKWLRSQMGLVNQEPILFSTSIKENIL-IGKPGASMETVVKAAQAA 430
G I G ++ +Q + +IKENI+ + +V+KA Q
Sbjct: 93 GKIKHSG-------------RISFCSQNSWIMPGTIKENIIGVSYDEYRYRSVIKACQ-- 137
Query: 431 NVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESER 490
+ + I K + +G+ G+ LSGGQ+ RI++ARA+ +D + LLD LD +E+
Sbjct: 138 -LEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEK 196
Query: 491 -IVQEALDQASQGRTMIIIAHRLSTIRKADLIGVLQSG 527
I + + + +T I++ ++ ++KAD I +L G
Sbjct: 197 EIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEG 234
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 91.7 bits (226), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 64/223 (28%), Positives = 116/223 (52%), Gaps = 14/223 (6%)
Query: 996 FKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSC 1055
L+LK+E+G+ ++G +G+GK+ + LI F+ P SG +++D +++ +L +
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVT--DLSPEKHD 73
Query: 1056 IALVSQEPTLFAG-TIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERG 1114
IA V Q +LF +++N+ +G + + ++ VL A + +
Sbjct: 74 IAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKR--VLDTARDL------KIEHLLDRNP 125
Query: 1115 VQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMVGR--TCVVVA 1172
+ LSGG++QR+ALARA++ NP ILLLDE SALD ++ +E L + T + +
Sbjct: 126 LTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHIT 185
Query: 1173 HRLSTIQ-KADNIVVIKNGKVVEQGTQSSLLSMGNGGAYYSLI 1214
H + + AD I V+ +GK+++ G + G S +
Sbjct: 186 HDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKPVEGRVASFV 228
Score = 79.7 bits (195), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 62/190 (32%), Positives = 98/190 (51%), Gaps = 14/190 (7%)
Query: 348 LVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFS-TS 406
++G +G+GK+ + L+ F+ P G ILLDG + L + + + V Q LF +
Sbjct: 31 ILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPE--KHDIAFVYQNYSLFPHMN 88
Query: 407 IKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIAR 466
+K+N+ G + K V D L E + + + LSGG++QR+A+AR
Sbjct: 89 VKKNLEFGM------RMKKIKDPKRVLDTARDLK--IEHLLDRNPLTLSGGEQQRVALAR 140
Query: 467 ALIRDPKILLLDEATSALDAESERIVQEALD--QASQGRTMIIIAHRLSTIR-KADLIGV 523
AL+ +PKILLLDE SALD ++ +E L T++ I H + R AD I V
Sbjct: 141 ALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAV 200
Query: 524 LQSGRVIESG 533
+ G++I+ G
Sbjct: 201 VMDGKLIQVG 210
>pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
pdb|2PZF|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
Length = 228
Score = 90.5 bits (223), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 63/210 (30%), Positives = 107/210 (50%), Gaps = 20/210 (9%)
Query: 995 IFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRS 1054
+ K + KIE G+ +A+ G +G+GK++++ +I +P G + R
Sbjct: 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGR------------ 70
Query: 1055 CIALVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVL--ANAHEFISSTEDGYDTYCGE 1112
I+ SQ + GTI++NI+ + E R +V+ E IS + + GE
Sbjct: 71 -ISFCSQFSWIMPGTIKENII----GVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGE 125
Query: 1113 RGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASEN-LVQEALEKMMVGRTCVVV 1171
G+ LSGGQ+ RI+LARAV K+ + LLD LD +E + + + K+M +T ++V
Sbjct: 126 GGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILV 185
Query: 1172 AHRLSTIQKADNIVVIKNGKVVEQGTQSSL 1201
++ ++KAD I+++ G GT S L
Sbjct: 186 TSKMEHLKKADKILILHEGSSYFYGTFSEL 215
Score = 71.6 bits (174), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 53/200 (26%), Positives = 98/200 (49%), Gaps = 21/200 (10%)
Query: 330 FKDVDFSYPTRPDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWL 389
KD++F + + GS+G+GK++++ ++ +P +G I G Q W+
Sbjct: 24 LKDINFKIER---GQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWI 80
Query: 390 RSQMGLVNQEPILFSTSIKENIL-IGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVG 448
+IKENI+ + +V+KA Q + + I K + +G
Sbjct: 81 -------------MPGTIKENIIGVSYDEYRYRSVIKACQ---LEEDISKFAEKDNIVLG 124
Query: 449 QFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESER-IVQEALDQASQGRTMII 507
+ G+ LSGGQ+ RI++ARA+ +D + LLD LD +E+ I + + + +T I+
Sbjct: 125 EGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRIL 184
Query: 508 IAHRLSTIRKADLIGVLQSG 527
+ ++ ++KAD I +L G
Sbjct: 185 VTSKMEHLKKADKILILHEG 204
>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 90.5 bits (223), Expect = 5e-18, Method: Composition-based stats.
Identities = 66/232 (28%), Positives = 117/232 (50%), Gaps = 11/232 (4%)
Query: 976 GFIELKNV--FFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQ 1033
G IE+ NV F + ++ + ++L I G+ + + G +GSGKST++ ++ +P
Sbjct: 3 GRIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPT 62
Query: 1034 SGSVMVDERNIKSYNLRKLRSCIALVSQEPTLFAGTIRQNIVYG-KEVATEAEIRKAAVL 1092
SG V+ D K Y +R+ IA E FA + + + K + + ++
Sbjct: 63 SGDVLYDGERKKGYEIRR-NIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRD--PVPLV 119
Query: 1093 ANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASE 1152
A EF+ +D++ LSGG+K+R+A+A ++ P IL+LDE LD +
Sbjct: 120 KKAMEFVGLD---FDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGK 176
Query: 1153 NLVQEALEK-MMVGRTCVVVAHRLST-IQKADNIVVIKNGKVVEQGTQSSLL 1202
+ +EK +G+T ++++H + T I D +VV++ GK V GT+ L
Sbjct: 177 TDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFL 228
Score = 81.3 bits (199), Expect = 3e-15, Method: Composition-based stats.
Identities = 60/198 (30%), Positives = 104/198 (52%), Gaps = 25/198 (12%)
Query: 348 LVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEP--ILFST 405
+ G++GSGKST++ ++ +P G++L DG + K ++ R +G+ Q P F+
Sbjct: 40 VAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEI---RRNIGIAFQYPEDQFFAE 96
Query: 406 SIKENILIG----KPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQR 461
+ + + P +VK A DF D ++ +V F LSGG+K+R
Sbjct: 97 RVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDF-----DSFKDRVPFF---LSGGEKRR 148
Query: 462 IAIARALIRDPKILLLDEATSALDAESE----RIVQEALDQASQGRTMIIIAHRLST-IR 516
+AIA ++ +P IL+LDE LD E + RIV++ + G+T+I+I+H + T I
Sbjct: 149 VAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEK---WKTLGKTVILISHDIETVIN 205
Query: 517 KADLIGVLQSGRVIESGS 534
D + VL+ G+ + G+
Sbjct: 206 HVDRVVVLEKGKKVFDGT 223
>pdb|2BBO|A Chain A, Human Nbd1 With Phe508
Length = 291
Score = 90.5 bits (223), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 106/211 (50%), Gaps = 15/211 (7%)
Query: 995 IFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRS 1054
+ K + KIE G+ +A+ G +G+GK++++ +I +P G + R
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGR------------ 100
Query: 1055 CIALVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERG 1114
I+ SQ + GTI++NI++G E R E IS + + GE G
Sbjct: 101 -ISFCSQFSWIMPGTIKENIIFGVSY-DEYRYRSVIKACQLEEDISKFAEKDNIVLGEGG 158
Query: 1115 VQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASE-NLVQEALEKMMVGRTCVVVAH 1173
+ LS GQ+ +I+LARAV K+ + LLD LD +E + + + K+M +T ++V
Sbjct: 159 ITLSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTS 218
Query: 1174 RLSTIQKADNIVVIKNGKVVEQGTQSSLLSM 1204
++ ++KAD I+++ G GT S L ++
Sbjct: 219 KMEHLKKADKILILHEGSSYFYGTFSELQNL 249
Score = 67.4 bits (163), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 56/219 (25%), Positives = 104/219 (47%), Gaps = 22/219 (10%)
Query: 312 NSEDEIGKTLAYLRGEIEFKDVDFSYPTRPDTPTIGLVGSSGSGKSTVISLLERFYDPVK 371
N +D + + L G KD++F + + GS+G+GK++++ ++ +P +
Sbjct: 36 NGDDSLSFSNLSLLGTPVLKDINFKIER---GQLLAVAGSTGAGKTSLLMMIMGELEPSE 92
Query: 372 GNILLDGHKIKKLQLKWLRSQMGLVNQEPILFSTSIKENILIG--KPGASMETVVKAAQA 429
G I G Q W+ +IKENI+ G +V+KA Q
Sbjct: 93 GKIKHSGRISFCSQFSWI-------------MPGTIKENIIFGVSYDEYRYRSVIKACQ- 138
Query: 430 ANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESE 489
+ + I K + +G+ G+ LS GQ+ +I++ARA+ +D + LLD LD +E
Sbjct: 139 --LEEDISKFAEKDNIVLGEGGITLSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTE 196
Query: 490 R-IVQEALDQASQGRTMIIIAHRLSTIRKADLIGVLQSG 527
+ I + + + +T I++ ++ ++KAD I +L G
Sbjct: 197 KEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEG 235
>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
Length = 266
Score = 89.7 bits (221), Expect = 9e-18, Method: Composition-based stats.
Identities = 65/230 (28%), Positives = 116/230 (50%), Gaps = 11/230 (4%)
Query: 978 IELKNV--FFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSG 1035
IE+ NV F + ++ + ++L I G+ + + G +GSGKST++ ++ +P SG
Sbjct: 3 IEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSG 62
Query: 1036 SVMVDERNIKSYNLRKLRSCIALVSQEPTLFAGTIRQNIVYG-KEVATEAEIRKAAVLAN 1094
V+ D K Y +R+ IA E FA + + + K + + ++
Sbjct: 63 DVLYDGERKKGYEIRR-NIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRD--PVPLVKK 119
Query: 1095 AHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENL 1154
A EF+ +D++ LSGG+K+R+A+A ++ P IL+LDE LD +
Sbjct: 120 AMEFVGLD---FDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTD 176
Query: 1155 VQEALEK-MMVGRTCVVVAHRLST-IQKADNIVVIKNGKVVEQGTQSSLL 1202
+ +EK +G+T ++++H + T I D +VV++ GK V GT+ L
Sbjct: 177 LLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFL 226
Score = 81.3 bits (199), Expect = 3e-15, Method: Composition-based stats.
Identities = 60/198 (30%), Positives = 104/198 (52%), Gaps = 25/198 (12%)
Query: 348 LVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEP--ILFST 405
+ G++GSGKST++ ++ +P G++L DG + K ++ R +G+ Q P F+
Sbjct: 38 VAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEI---RRNIGIAFQYPEDQFFAE 94
Query: 406 SIKENILIG----KPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQR 461
+ + + P +VK A DF D ++ +V F LSGG+K+R
Sbjct: 95 RVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDF-----DSFKDRVPFF---LSGGEKRR 146
Query: 462 IAIARALIRDPKILLLDEATSALDAESE----RIVQEALDQASQGRTMIIIAHRLST-IR 516
+AIA ++ +P IL+LDE LD E + RIV++ + G+T+I+I+H + T I
Sbjct: 147 VAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEK---WKTLGKTVILISHDIETVIN 203
Query: 517 KADLIGVLQSGRVIESGS 534
D + VL+ G+ + G+
Sbjct: 204 HVDRVVVLEKGKKVFDGT 221
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate
Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate
Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 87.8 bits (216), Expect = 3e-17, Method: Composition-based stats.
Identities = 65/207 (31%), Positives = 106/207 (51%), Gaps = 15/207 (7%)
Query: 997 KGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCI 1056
+G++ +I G+ V L+G SGSGK+TI+ LI P G V + + + +L + +
Sbjct: 32 RGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVT--DLPPQKRNV 89
Query: 1057 ALVSQEPTLFAG-TIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGV 1115
LV Q LF T+ N+ +G E + K + A E + ++Y
Sbjct: 90 GLVFQNYALFQHMTVYDNVSFGLR---EKRVPKDEMDARVRELLRFMR--LESYANRFPH 144
Query: 1116 QLSGGQKQRIALARAVLKNPMILLLDEATSALDSAS----ENLVQEALEKMMVGRTCVVV 1171
+LSGGQ+QR+ALARA+ P +LL DE +A+D+ V++ ++M G T V V
Sbjct: 145 ELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEM--GVTSVFV 202
Query: 1172 AH-RLSTIQKADNIVVIKNGKVVEQGT 1197
H + ++ AD ++V+ G V + GT
Sbjct: 203 THDQEEALEVADRVLVLHEGNVEQFGT 229
Score = 87.0 bits (214), Expect = 6e-17, Method: Composition-based stats.
Identities = 66/223 (29%), Positives = 115/223 (51%), Gaps = 23/223 (10%)
Query: 346 IGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFS- 404
+GL+G SGSGK+T++ L+ P KG++ + G ++ L + + +GLV Q LF
Sbjct: 44 VGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQ--KRNVGLVFQNYALFQH 101
Query: 405 TSIKENILIGKPGASMETVVKAAQAANVHDFI--MKLNDGYETKVGQFGVQLSGGQKQRI 462
++ +N+ G + V K A V + + M+L E+ +F +LSGGQ+QR+
Sbjct: 102 MTVYDNVSFG---LREKRVPKDEMDARVRELLRFMRL----ESYANRFPHELSGGQQQRV 154
Query: 463 AIARALIRDPKILLLDEATSALDAESERIVQEALDQA--SQGRTMIIIAH-RLSTIRKAD 519
A+ARAL P++LL DE +A+D + R ++ + Q G T + + H + + AD
Sbjct: 155 ALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVAD 214
Query: 520 LIGVLQSGRVIESGSHDVLMQMNN--------GEGGAYSKMVQ 554
+ VL G V + G+ + + + GE +++ VQ
Sbjct: 215 RVLVLHEGNVEQFGTPEEVYEKPGTLFVASFIGESNVWTRAVQ 257
>pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain With
Atp
Length = 290
Score = 85.1 bits (209), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 61/213 (28%), Positives = 108/213 (50%), Gaps = 20/213 (9%)
Query: 995 IFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRS 1054
+ K + KIE G+ +A+ G +G+GK++++ +I +P G + R
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGR------------ 100
Query: 1055 CIALVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVL--ANAHEFISSTEDGYDTYCGE 1112
I+ SQ + GTI++NI+ + E R +V+ E IS + + GE
Sbjct: 101 -ISFCSQFSWIMPGTIKENII----GVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGE 155
Query: 1113 RGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASE-NLVQEALEKMMVGRTCVVV 1171
G+ LS GQ+ +I+LARAV K+ + LLD LD +E + + + K+M +T ++V
Sbjct: 156 GGITLSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILV 215
Query: 1172 AHRLSTIQKADNIVVIKNGKVVEQGTQSSLLSM 1204
++ ++KAD I+++ G GT S L ++
Sbjct: 216 TSKMEHLKKADKILILHEGSSYFYGTFSELQNL 248
Score = 66.2 bits (160), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 55/218 (25%), Positives = 104/218 (47%), Gaps = 21/218 (9%)
Query: 312 NSEDEIGKTLAYLRGEIEFKDVDFSYPTRPDTPTIGLVGSSGSGKSTVISLLERFYDPVK 371
N +D + + L G KD++F + + GS+G+GK++++ ++ +P +
Sbjct: 36 NGDDSLSFSNLSLLGTPVLKDINFKIER---GQLLAVAGSTGAGKTSLLMMIMGELEPSE 92
Query: 372 GNILLDGHKIKKLQLKWLRSQMGLVNQEPILFSTSIKENIL-IGKPGASMETVVKAAQAA 430
G I G Q W+ +IKENI+ + +V+KA Q
Sbjct: 93 GKIKHSGRISFCSQFSWI-------------MPGTIKENIIGVSYDEYRYRSVIKACQ-- 137
Query: 431 NVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESER 490
+ + I K + +G+ G+ LS GQ+ +I++ARA+ +D + LLD LD +E+
Sbjct: 138 -LEEDISKFAEKDNIVLGEGGITLSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEK 196
Query: 491 -IVQEALDQASQGRTMIIIAHRLSTIRKADLIGVLQSG 527
I + + + +T I++ ++ ++KAD I +L G
Sbjct: 197 EIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEG 234
>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
Protein
Length = 359
Score = 84.3 bits (207), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 64/210 (30%), Positives = 106/210 (50%), Gaps = 15/210 (7%)
Query: 998 GLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIA 1057
G++ +++ G+ VAL+G SG GK+T + ++ Y P SG + D+ + K R +
Sbjct: 21 GVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIP-PKYRE-VG 78
Query: 1058 LVSQEPTLFAG-TIRQNIVYGKEVA--TEAEIRKAAVLANAHEFISSTEDGYDTYCGERG 1114
+V Q L+ T+ +NI + ++ E+ K V I D +
Sbjct: 79 MVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLI-------DNLLDRKP 131
Query: 1115 VQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMM--VGRTCVVVA 1172
QLSGGQ+QR+ALARA++K P +LL DE S LD+ +++ ++ + +G T V V
Sbjct: 132 TQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVT 191
Query: 1173 H-RLSTIQKADNIVVIKNGKVVEQGTQSSL 1201
H + + A I V GK+V+ GT +
Sbjct: 192 HDQAEAMTMASRIAVFNQGKLVQYGTPDEV 221
Score = 82.0 bits (201), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 68/231 (29%), Positives = 108/231 (46%), Gaps = 21/231 (9%)
Query: 310 VINSEDEIGKTLAYLRGEIEFKDVDFSYPTRPDTPTIGLVGSSGSGKSTVISLLERFYDP 369
V+N + GK A E KD +F + L+G SG GK+T + +L Y P
Sbjct: 6 VVNLKKYFGKVKAVDGVSFEVKDGEF----------VALLGPSGCGKTTTLLMLAGIYKP 55
Query: 370 VKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFS-TSIKENILIGKPGASMETVVKAAQ 428
G I D + + K+ ++G+V Q L+ ++ ENI + K
Sbjct: 56 TSGEIYFDDVLVNDIPPKY--REVGMVFQNYALYPHMTVFENIAFP---LRARRISKDEV 110
Query: 429 AANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAES 488
V + KL + + + QLSGGQ+QR+A+ARAL++ PK+LL DE S LDA
Sbjct: 111 EKRVVEIARKL--LIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANL 168
Query: 489 ERIVQEALDQASQ--GRTMIIIAH-RLSTIRKADLIGVLQSGRVIESGSHD 536
I++ + Q G T + + H + + A I V G++++ G+ D
Sbjct: 169 RMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQYGTPD 219
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 81.3 bits (199), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 62/220 (28%), Positives = 107/220 (48%), Gaps = 19/220 (8%)
Query: 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSV 1037
IEL +V F Y + K + + E GK +VG++GSGK+T++ ++ +G +
Sbjct: 12 IELNSVSFRYNG---DYVLKDVNAEFETGKIYVVVGKNGSGKTTLLKILAGLL-AAAGEI 67
Query: 1038 MVDERNIKSYNLRKLRSCIALVSQEPT--LFAGTIRQNIVYGKEVA--TEAEIRKAAVLA 1093
+D + LRK + V Q P+ + T+ +++ + E+ E+E+RK +
Sbjct: 68 FLDGSPADPFLLRK---NVGYVFQNPSSQIIGATVEEDVAFSLEIMGLDESEMRKR--IK 122
Query: 1094 NAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASEN 1153
E + G + LSGGQKQR+A+A + ++ L LDE S LD S+
Sbjct: 123 KVLELV-----GLSGLAAADPLNLSGGQKQRLAIASMLARDTRFLALDEPVSMLDPPSQR 177
Query: 1154 LVQEALEKMM-VGRTCVVVAHRLSTIQKADNIVVIKNGKV 1192
+ + LE + G+ ++V H L + D I+ I NG +
Sbjct: 178 EIFQVLESLKNEGKGIILVTHELEYLDDMDFILHISNGTI 217
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 60/218 (27%), Positives = 101/218 (46%), Gaps = 15/218 (6%)
Query: 326 GEIEFKDVDFSYPTRPDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQ 385
G+ KDV+ + T +VG +GSGK+T++ +L G I LDG
Sbjct: 23 GDYVLKDVNAEFET---GKIYVVVGKNGSGKTTLLKILAGLL-AAAGEIFLDGSPADPFL 78
Query: 386 LKWLRSQMGLVNQEPI--LFSTSIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGY 443
L R +G V Q P + +++E++ ++ + V + + G
Sbjct: 79 L---RKNVGYVFQNPSSQIIGATVEEDVAFSLEIMGLDESEMRKRIKKVLELV-----GL 130
Query: 444 ETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQ-ASQG 502
+ LSGGQKQR+AIA L RD + L LDE S LD S+R + + L+ ++G
Sbjct: 131 SGLAAADPLNLSGGQKQRLAIASMLARDTRFLALDEPVSMLDPPSQREIFQVLESLKNEG 190
Query: 503 RTMIIIAHRLSTIRKADLIGVLQSGRVIESGSHDVLMQ 540
+ +I++ H L + D I + +G + GS + ++
Sbjct: 191 KGIILVTHELEYLDDMDFILHISNGTIDFCGSWEEFVE 228
>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|B Chain B, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|F Chain F, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|G Chain G, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
Length = 240
Score = 80.1 bits (196), Expect = 6e-15, Method: Composition-based stats.
Identities = 69/217 (31%), Positives = 102/217 (47%), Gaps = 20/217 (9%)
Query: 999 LTLKIEAGKT-VALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIA 1057
L + E G+ L+G +G+GKS + LI P G V ++ +I L R I
Sbjct: 16 LNVDFEMGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITP--LPPERRGIG 73
Query: 1058 LVSQEPTLFAG-TIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTED-GYDTYCGERGV 1115
V Q+ LF ++ +NI YG +R + E G +
Sbjct: 74 FVPQDYALFPHLSVYRNIAYG--------LRNVERVERDRRVREMAEKLGIAHLLDRKPA 125
Query: 1116 QLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMVGRTCVV----V 1171
+LSGG++QR+ALARA++ P +LLLDE SA+D ++ ++ E L V R V V
Sbjct: 126 RLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELR--FVQREFDVPILHV 183
Query: 1172 AHRL-STIQKADNIVVIKNGKVVEQGTQSSLLSMGNG 1207
H L AD + V+ NG++VE+G L S NG
Sbjct: 184 THDLIEAAMLADEVAVMLNGRIVEKGKLKELFSAKNG 220
Score = 79.7 bits (195), Expect = 1e-14, Method: Composition-based stats.
Identities = 64/202 (31%), Positives = 104/202 (51%), Gaps = 13/202 (6%)
Query: 348 LVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFS-TS 406
L+G +G+GKS + L+ P +G + L+G I L + R +G V Q+ LF S
Sbjct: 29 LLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPE--RRGIGFVPQDYALFPHLS 86
Query: 407 IKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIAR 466
+ NI G + V + + V + KL G + + +LSGG++QR+A+AR
Sbjct: 87 VYRNIAYG-----LRNVERVERDRRVREMAEKL--GIAHLLDRKPARLSGGERQRVALAR 139
Query: 467 ALIRDPKILLLDEATSALDAESERIVQEALD--QASQGRTMIIIAHRL-STIRKADLIGV 523
AL+ P++LLLDE SA+D +++ ++ E L Q ++ + H L AD + V
Sbjct: 140 ALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAV 199
Query: 524 LQSGRVIESGSHDVLMQMNNGE 545
+ +GR++E G L NGE
Sbjct: 200 MLNGRIVEKGKLKELFSAKNGE 221
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 79.3 bits (194), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 70/230 (30%), Positives = 116/230 (50%), Gaps = 32/230 (13%)
Query: 347 GLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIK---KLQLKWLRSQMGLVNQEPILF 403
G++G SG+GK+T + ++ P G + D + KL + ++G+V Q L+
Sbjct: 35 GILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALY 94
Query: 404 ST-SIKENILIGKPGASM---ETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQK 459
+ ENI M E + + A + D LN F +LSGGQ+
Sbjct: 95 PNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLN--------HFPRELSGGQQ 146
Query: 460 QRIAIARALIRDPKILLLDEATSALDA---ESER-IVQEALDQASQGRTMIIIAHRLSTI 515
QR+A+ARAL++DP +LLLDE S LDA +S R +V+E Q+ G T+++++H + I
Sbjct: 147 QRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEV--QSRLGVTLLVVSHDPADI 204
Query: 516 RK-ADLIGVLQSGRVIESGSHDVLMQMNNGEGGAYSKMVQLQQSAMRNEV 564
AD +GVL G++++ G + L Y V +Q +++ E+
Sbjct: 205 FAIADRVGVLVKGKLVQVGKPEDL----------YDNPVSIQVASLIGEI 244
Score = 75.9 bits (185), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 67/218 (30%), Positives = 111/218 (50%), Gaps = 28/218 (12%)
Query: 999 LTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYN---LRKLRSC 1055
+ + IE G+ ++G SG+GK+T + +I P +G + D+R + S +
Sbjct: 24 VNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRK 83
Query: 1056 IALVSQEPTLFAG-TIRQNIVYG--KEVATEAEIRK----AAVLANAHEFISSTEDGYDT 1108
I +V Q L+ T +NI + ++ EIRK A + + H ++
Sbjct: 84 IGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPR---- 139
Query: 1109 YCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDS----ASENLVQEALEKMMV 1164
+LSGGQ+QR+ALARA++K+P +LLLDE S LD+ ++ LV+E ++
Sbjct: 140 -------ELSGGQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRL-- 190
Query: 1165 GRTCVVVAHRLSTI-QKADNIVVIKNGKVVEQGTQSSL 1201
G T +VV+H + I AD + V+ GK+V+ G L
Sbjct: 191 GVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDL 228
>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCJ|B Chain B, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCL|A Chain A, Crystal Structure Of Abc Transporter With Complex (Aq_297)
From Aquifex Aeolicus Vf5
Length = 224
Score = 78.2 bits (191), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 64/215 (29%), Positives = 106/215 (49%), Gaps = 21/215 (9%)
Query: 995 IFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKL-- 1052
I KG++L ++ G+ V+++G SGSGKST++ ++ P G V ++ + + N ++L
Sbjct: 19 ILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSL 78
Query: 1053 --RSCIALVSQ------EPTLFAGTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTED 1104
+ V Q E T I + GK EA+ R +L +E
Sbjct: 79 LRNRKLGFVFQFHYLIPELTALENVIVPMLKMGKP-KKEAKERGEYLL---------SEL 128
Query: 1105 GYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMV 1164
G + +LSGG++QR+A+ARA+ P++L DE T LDSA+ V + K+
Sbjct: 129 GLGDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINE 188
Query: 1165 GRTCVV-VAHRLSTIQKADNIVVIKNGKVVEQGTQ 1198
G T +V V H + + +K+GKVV + T+
Sbjct: 189 GGTSIVMVTHERELAELTHRTLEMKDGKVVGEITR 223
Score = 68.6 bits (166), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 95/176 (53%), Gaps = 21/176 (11%)
Query: 346 IGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKI---KKLQLKWLRS-QMGLVNQEPI 401
+ ++G+SGSGKST++ +L P +G + L+G ++ + +L LR+ ++G V Q
Sbjct: 33 VSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQFHY 92
Query: 402 LF-STSIKENILI-----GKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLS 455
L + EN+++ GKP +A ++++ G K+ + +LS
Sbjct: 93 LIPELTALENVIVPMLKMGKP---------KKEAKERGEYLLS-ELGLGDKLSRKPYELS 142
Query: 456 GGQKQRIAIARALIRDPKILLLDEATSALD-AESERIVQEALDQASQGRTMIIIAH 510
GG++QR+AIARAL +P +L DE T LD A ++R++ L G +++++ H
Sbjct: 143 GGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTH 198
>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein
(tm0544) From Thermotoga Maritima At 2.10 A Resolution
Length = 256
Score = 77.8 bits (190), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 70/222 (31%), Positives = 113/222 (50%), Gaps = 33/222 (14%)
Query: 995 IFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNI--KSYNLRKL 1052
I KG++ +IE G+ L+G +G+GK+T + +I P SG V V +N+ + + +RKL
Sbjct: 30 ILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKL 89
Query: 1053 RSCIALVSQEPTLFAGTIR--QNIVYGKEVA---------TEAEIRKAAVLANAHEFISS 1101
I+ + +E AG R Q I Y + VA E + +A +A E I
Sbjct: 90 ---ISYLPEE----AGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKI-- 140
Query: 1102 TEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEK 1161
+D TY S G +++ +ARA++ NP + +LDE TS LD + V++ L++
Sbjct: 141 -KDRVSTY--------SKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQ 191
Query: 1162 M-MVGRTCVVVAHRLSTIQ-KADNIVVIKNGKVVEQGTQSSL 1201
G T +V +H + ++ D I +I NG +VE GT L
Sbjct: 192 ASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEEL 233
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/204 (26%), Positives = 107/204 (52%), Gaps = 23/204 (11%)
Query: 347 GLVGSSGSGKSTVISLLERFYDPVKG-------NILLDGHKIKKLQLKWLRSQMGLV-NQ 398
GL+G +G+GK+T + ++ P G N++ + H+++KL + +L + G N
Sbjct: 45 GLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKL-ISYLPEEAGAYRNM 103
Query: 399 EPILFSTSIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQ 458
+ I + + + +E +V+ A I L + + +V + S G
Sbjct: 104 QGIEYLRFVAG--FYASSSSEIEEMVERATE------IAGLGEKIKDRVSTY----SKGM 151
Query: 459 KQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQASQ-GRTMIIIAHRLSTIR- 516
+++ IARAL+ +P++ +LDE TS LD + R V++ L QASQ G T+++ +H + +
Sbjct: 152 VRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEF 211
Query: 517 KADLIGVLQSGRVIESGSHDVLMQ 540
D I ++ +G ++E+G+ + L +
Sbjct: 212 LCDRIALIHNGTIVETGTVEELKE 235
>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 77.0 bits (188), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 69/230 (30%), Positives = 115/230 (50%), Gaps = 32/230 (13%)
Query: 347 GLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIK---KLQLKWLRSQMGLVNQEPILF 403
G++G SG+GK+T + ++ P G + D + KL + ++G+V Q L+
Sbjct: 35 GILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALY 94
Query: 404 ST-SIKENILIGKPGASM---ETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQK 459
+ ENI M E + + A + D LN F +LSG Q+
Sbjct: 95 PNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLN--------HFPRELSGAQQ 146
Query: 460 QRIAIARALIRDPKILLLDEATSALDA---ESER-IVQEALDQASQGRTMIIIAHRLSTI 515
QR+A+ARAL++DP +LLLDE S LDA +S R +V+E Q+ G T+++++H + I
Sbjct: 147 QRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEV--QSRLGVTLLVVSHDPADI 204
Query: 516 RK-ADLIGVLQSGRVIESGSHDVLMQMNNGEGGAYSKMVQLQQSAMRNEV 564
AD +GVL G++++ G + L Y V +Q +++ E+
Sbjct: 205 FAIADRVGVLVKGKLVQVGKPEDL----------YDNPVSIQVASLIGEI 244
Score = 73.2 bits (178), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 66/218 (30%), Positives = 110/218 (50%), Gaps = 28/218 (12%)
Query: 999 LTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYN---LRKLRSC 1055
+ + IE G+ ++G SG+GK+T + +I P +G + D+R + S +
Sbjct: 24 VNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRK 83
Query: 1056 IALVSQEPTLFAG-TIRQNIVYG--KEVATEAEIRK----AAVLANAHEFISSTEDGYDT 1108
I +V Q L+ T +NI + ++ EIRK A + + H ++
Sbjct: 84 IGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPR---- 139
Query: 1109 YCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDS----ASENLVQEALEKMMV 1164
+LSG Q+QR+ALARA++K+P +LLLDE S LD+ ++ LV+E ++
Sbjct: 140 -------ELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRL-- 190
Query: 1165 GRTCVVVAHRLSTI-QKADNIVVIKNGKVVEQGTQSSL 1201
G T +VV+H + I AD + V+ GK+V+ G L
Sbjct: 191 GVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDL 228
>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
pdb|3FVQ|B Chain B, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
Length = 359
Score = 75.5 bits (184), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 67/200 (33%), Positives = 111/200 (55%), Gaps = 12/200 (6%)
Query: 348 LVGSSGSGKSTVISLLERFYDPVKGNILLDGHKI--KKLQLKWLRSQMGLVNQEPILFST 405
++G+SG GK+T++ L F P G I L G I K L ++G + QE +LF
Sbjct: 35 IIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRLGYLVQEGVLFPH 94
Query: 406 -SIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAI 464
++ NI G T AQ + +++L G G++ +LSGGQ+QR A+
Sbjct: 95 LTVYRNIAYGLGNGKGRT----AQERQRIEAMLELT-GISELAGRYPHELSGGQQQRAAL 149
Query: 465 ARALIRDPKILLLDEATSALDAESERIVQEALDQA--SQGRTMIIIAH-RLSTIRKADLI 521
ARAL DP+++LLDE SALD + R ++E + A + G++ + ++H R ++ AD I
Sbjct: 150 ARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADRI 209
Query: 522 GVLQSGRVIESGS-HDVLMQ 540
V++ GR++++ S H++ Q
Sbjct: 210 AVMKQGRILQTASPHELYRQ 229
Score = 72.8 bits (177), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 69/220 (31%), Positives = 111/220 (50%), Gaps = 25/220 (11%)
Query: 995 IFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNI--KSYNLRKL 1052
+ ++L ++ G+ + ++G SG GK+T++ + F P SG + + + I K+ NL
Sbjct: 19 VLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVR 78
Query: 1053 RSCIALVSQEPTLFAG-TIRQNIVYG----KEVATEAEIRKAAVLANAHEFISSTEDGYD 1107
+ + QE LF T+ +NI YG K + R A+L G
Sbjct: 79 ERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELT---------GIS 129
Query: 1108 TYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMV--- 1164
G +LSGGQ+QR ALARA+ +P ++LLDE SALD E L ++ E M+
Sbjct: 130 ELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALD---EQLRRQIREDMIAALR 186
Query: 1165 --GRTCVVVAH-RLSTIQKADNIVVIKNGKVVEQGTQSSL 1201
G++ V V+H R +Q AD I V+K G++++ + L
Sbjct: 187 ANGKSAVFVSHDREEALQYADRIAVMKQGRILQTASPHEL 226
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 75.5 bits (184), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 64/230 (27%), Positives = 113/230 (49%), Gaps = 28/230 (12%)
Query: 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSV 1037
++L+NV ++ + ++ K + L I G+ V VG SG GKST++ +I SG +
Sbjct: 4 VQLQNVTKAWG---EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDL 60
Query: 1038 MVDERNIKSYNLRKLRSCIALVSQEPTLFAG-TIRQNIVYG-------KEVATEAEIRKA 1089
+ E+ + + + +V Q L+ ++ +N+ +G KEV + + A
Sbjct: 61 FIGEKRMN--DTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVA 118
Query: 1090 AVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDS 1149
VL AH + LSGGQ+QR+A+ R ++ P + LLDE S LD+
Sbjct: 119 EVLQLAH------------LLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDA 166
Query: 1150 ASENLVQEALEKMM--VGRTCVVVAH-RLSTIQKADNIVVIKNGKVVEQG 1196
A ++ + ++ +GRT + V H ++ + AD IVV+ G+V + G
Sbjct: 167 ALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVG 216
Score = 64.7 bits (156), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 93/193 (48%), Gaps = 17/193 (8%)
Query: 348 LVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFS-TS 406
VG SG GKST++ ++ G++ + ++ +G+V Q L+ S
Sbjct: 34 FVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDT--PPAERGVGMVFQSYALYPHLS 91
Query: 407 IKENILIGK--PGASMETV-VKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIA 463
+ EN+ G GA E + + Q A V L+ + LSGGQ+QR+A
Sbjct: 92 VAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKA--------LSGGQRQRVA 143
Query: 464 IARALIRDPKILLLDEATSALDAESERIVQEALDQASQ--GRTMIIIAH-RLSTIRKADL 520
I R L+ +P + LLDE S LDA ++ + + + GRTMI + H ++ + AD
Sbjct: 144 IGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADK 203
Query: 521 IGVLQSGRVIESG 533
I VL +GRV + G
Sbjct: 204 IVVLDAGRVAQVG 216
>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From
Salmonella Typhimurium
Length = 262
Score = 75.5 bits (184), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 72/227 (31%), Positives = 117/227 (51%), Gaps = 37/227 (16%)
Query: 995 IFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIK--------- 1045
+ KG++L+ AG ++++G SGSGKST + I P G+++V+ +NI
Sbjct: 21 VLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQL 80
Query: 1046 ----SYNLRKLRSCIALVSQEPTLFAG-TIRQNIVYGKEVATEAEIR-----KAAVLANA 1095
LR LR+ + +V Q L++ T+ +N++ EA I+ K A
Sbjct: 81 KVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVM-------EAPIQVLGLSKHDARERA 133
Query: 1096 HEFISSTEDGYDTYC-GERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENL 1154
++++ G D G+ V LSGGQ+QR+++ARA+ P +LL DE TSALD L
Sbjct: 134 LKYLAKV--GIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDP---EL 188
Query: 1155 VQEALEKMMV----GRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQG 1196
V E L M G+T VVV H + + + +++ + GK+ E+G
Sbjct: 189 VGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEG 235
Score = 75.1 bits (183), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 60/199 (30%), Positives = 101/199 (50%), Gaps = 27/199 (13%)
Query: 356 KSTVISLLERFYDPVKGNILLDGHKIK-------------KLQLKWLRSQMGLVNQEPIL 402
KST + + P +G I+++G I K QL+ LR+++ +V Q L
Sbjct: 45 KSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNL 104
Query: 403 FS-TSIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKV-GQFGVQLSGGQKQ 460
+S ++ EN++ A ++ + + A G + + G++ V LSGGQ+Q
Sbjct: 105 WSHMTVLENVM----EAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQ 160
Query: 461 RIAIARALIRDPKILLLDEATSALD----AESERIVQEALDQASQGRTMIIIAHRLSTIR 516
R++IARAL +P +LL DE TSALD E RI+Q+ A +G+TM+++ H + R
Sbjct: 161 RVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQL---AEEGKTMVVVTHEMGFAR 217
Query: 517 K-ADLIGVLQSGRVIESGS 534
+ + L G++ E G
Sbjct: 218 HVSSHVIFLHQGKIEEEGD 236
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 75.1 bits (183), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 64/230 (27%), Positives = 113/230 (49%), Gaps = 28/230 (12%)
Query: 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSV 1037
++L+NV ++ + ++ K + L I G+ V VG SG GKST++ +I SG +
Sbjct: 4 VQLQNVTKAWG---EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDL 60
Query: 1038 MVDERNIKSYNLRKLRSCIALVSQEPTLFAG-TIRQNIVYG-------KEVATEAEIRKA 1089
+ E+ + + + +V Q L+ ++ +N+ +G KEV + + A
Sbjct: 61 FIGEKRMN--DTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVA 118
Query: 1090 AVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDS 1149
VL AH + LSGGQ+QR+A+ R ++ P + LLDE S LD+
Sbjct: 119 EVLQLAH------------LLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDA 166
Query: 1150 ASENLVQEALEKMM--VGRTCVVVAH-RLSTIQKADNIVVIKNGKVVEQG 1196
A ++ + ++ +GRT + V H ++ + AD IVV+ G+V + G
Sbjct: 167 ALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVG 216
Score = 64.7 bits (156), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 93/193 (48%), Gaps = 17/193 (8%)
Query: 348 LVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFS-TS 406
VG SG GKST++ ++ G++ + ++ +G+V Q L+ S
Sbjct: 34 FVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDT--PPAERGVGMVFQSYALYPHLS 91
Query: 407 IKENILIGK--PGASMETV-VKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIA 463
+ EN+ G GA E + + Q A V L+ + LSGGQ+QR+A
Sbjct: 92 VAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKA--------LSGGQRQRVA 143
Query: 464 IARALIRDPKILLLDEATSALDAESERIVQEALDQASQ--GRTMIIIAH-RLSTIRKADL 520
I R L+ +P + LLDE S LDA ++ + + + GRTMI + H ++ + AD
Sbjct: 144 IGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADK 203
Query: 521 IGVLQSGRVIESG 533
I VL +GRV + G
Sbjct: 204 IVVLDAGRVAQVG 216
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter
Length = 372
Score = 75.1 bits (183), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/213 (27%), Positives = 111/213 (52%), Gaps = 23/213 (10%)
Query: 999 LTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIAL 1058
L L I+ G+ + L+G SG GK+T + +I +P G + +R++ +Y K R+ I++
Sbjct: 30 LNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDV-TYLPPKDRN-ISM 87
Query: 1059 VSQEPTLFAG-TIRQNIVYGKEVAT------EAEIRKAAVLANAHEFISSTEDGYDTYCG 1111
V Q ++ T+ +NI + ++ + +R AA L E ++
Sbjct: 88 VFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYP-------- 139
Query: 1112 ERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMM--VGRTCV 1169
QLSGGQ+QR+A+ARA++ P +LL+DE S LD+ ++ ++K+ + T +
Sbjct: 140 ---AQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTI 196
Query: 1170 VVAH-RLSTIQKADNIVVIKNGKVVEQGTQSSL 1201
V H ++ + D I V+ G++++ G+ + +
Sbjct: 197 YVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEV 229
Score = 66.6 bits (161), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 99/197 (50%), Gaps = 23/197 (11%)
Query: 348 LVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFS-TS 406
L+G SG GK+T + ++ +P +G I + L K + +V Q ++ +
Sbjct: 42 LLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRNISMVFQSYAVWPHMT 99
Query: 407 IKENIL----IGK-PGASMETVVK-AAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQ 460
+ ENI I K P ++ V+ AA+ + + + ++ QLSGGQ+Q
Sbjct: 100 VYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELL-----------NRYPAQLSGGQRQ 148
Query: 461 RIAIARALIRDPKILLLDEATSALDAE---SERIVQEALDQASQGRTMIIIAHRLSTIRK 517
R+A+ARA++ +P +LL+DE S LDA+ + R + L Q + T+ + ++ +
Sbjct: 149 RVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTM 208
Query: 518 ADLIGVLQSGRVIESGS 534
D I V+ G++++ GS
Sbjct: 209 GDRIAVMNRGQLLQIGS 225
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar
Transporter From Pyrococcus Horikoshii Ot3 Complexed With
Atp
Length = 373
Score = 75.1 bits (183), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/213 (27%), Positives = 111/213 (52%), Gaps = 23/213 (10%)
Query: 999 LTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIAL 1058
L L I+ G+ + L+G SG GK+T + +I +P G + +R++ +Y K R+ I++
Sbjct: 31 LNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDV-TYLPPKDRN-ISM 88
Query: 1059 VSQEPTLFAG-TIRQNIVYGKEVAT------EAEIRKAAVLANAHEFISSTEDGYDTYCG 1111
V Q ++ T+ +NI + ++ + +R AA L E ++
Sbjct: 89 VFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYP-------- 140
Query: 1112 ERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMM--VGRTCV 1169
QLSGGQ+QR+A+ARA++ P +LL+DE S LD+ ++ ++K+ + T +
Sbjct: 141 ---AQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTI 197
Query: 1170 VVAH-RLSTIQKADNIVVIKNGKVVEQGTQSSL 1201
V H ++ + D I V+ G++++ G+ + +
Sbjct: 198 YVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEV 230
Score = 66.6 bits (161), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 99/197 (50%), Gaps = 23/197 (11%)
Query: 348 LVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFS-TS 406
L+G SG GK+T + ++ +P +G I + L K + +V Q ++ +
Sbjct: 43 LLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRNISMVFQSYAVWPHMT 100
Query: 407 IKENIL----IGK-PGASMETVVK-AAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQ 460
+ ENI I K P ++ V+ AA+ + + + ++ QLSGGQ+Q
Sbjct: 101 VYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELL-----------NRYPAQLSGGQRQ 149
Query: 461 RIAIARALIRDPKILLLDEATSALDAE---SERIVQEALDQASQGRTMIIIAHRLSTIRK 517
R+A+ARA++ +P +LL+DE S LDA+ + R + L Q + T+ + ++ +
Sbjct: 150 RVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTM 209
Query: 518 ADLIGVLQSGRVIESGS 534
D I V+ G++++ GS
Sbjct: 210 GDRIAVMNRGQLLQIGS 226
>pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A
Dipeptide Abc Transporter
Length = 334
Score = 74.7 bits (182), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 65/210 (30%), Positives = 107/210 (50%), Gaps = 13/210 (6%)
Query: 998 GLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQ----SGSVMVDERNI---KSYNLR 1050
G++L I A+VG+S SGKSTII + + P SG V+ +++ + LR
Sbjct: 26 GISLDILENSVTAIVGESASGKSTIIEAMTKTLPPNGRILSGRVLYKGKDLLTMREEELR 85
Query: 1051 KLR-SCIALVSQEPTLFAGTIRQNIVYGKEVATEAEIR--KAAVLANAHEFISSTEDGYD 1107
K+R IALV Q + I + K+ +R + ++ A E + +
Sbjct: 86 KIRWKEIALVPQAAQQSLNPTMKVIEHFKDTVEAHGVRWSHSELIEKASEKLRMVRLNPE 145
Query: 1108 TYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASE-NLVQEALEKMMVGR 1166
+QLSGG KQR+ +A A+L +P++L+LDE TSALD ++ +++Q E + +
Sbjct: 146 AVLNSYPLQLSGGMKQRVLIALALLLDPVVLILDEPTSALDVLTQAHIIQLLKELKKMLK 205
Query: 1167 -TCVVVAHRLSTIQK-ADNIVVIKNGKVVE 1194
T + V H ++ + AD + VI G +VE
Sbjct: 206 ITLIFVTHDIAVAAELADKVAVIYGGNLVE 235
Score = 67.4 bits (163), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 61/210 (29%), Positives = 106/210 (50%), Gaps = 31/210 (14%)
Query: 347 GLVGSSGSGKSTVISLLERFYDP----VKGNILLDGHKIKKLQLKWLRS----QMGLVNQ 398
+VG S SGKST+I + + P + G +L G + ++ + LR ++ LV Q
Sbjct: 38 AIVGESASGKSTIIEAMTKTLPPNGRILSGRVLYKGKDLLTMREEELRKIRWKEIALVPQ 97
Query: 399 ------EPIL-----FSTSIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKV 447
P + F +++ + G + E + KA++ +++LN E +
Sbjct: 98 AAQQSLNPTMKVIEHFKDTVEAH---GVRWSHSELIEKASEKLR----MVRLNP--EAVL 148
Query: 448 GQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESE-RIVQEALDQASQGR-TM 505
+ +QLSGG KQR+ IA AL+ DP +L+LDE TSALD ++ I+Q + + T+
Sbjct: 149 NSYPLQLSGGMKQRVLIALALLLDPVVLILDEPTSALDVLTQAHIIQLLKELKKMLKITL 208
Query: 506 IIIAHRLSTIRK-ADLIGVLQSGRVIESGS 534
I + H ++ + AD + V+ G ++E S
Sbjct: 209 IFVTHDIAVAAELADKVAVIYGGNLVEYNS 238
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 73.9 bits (180), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 63/230 (27%), Positives = 113/230 (49%), Gaps = 28/230 (12%)
Query: 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSV 1037
++L+NV ++ + ++ K + L I G+ V VG SG GKST++ +I SG +
Sbjct: 4 VQLQNVTKAWG---EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDL 60
Query: 1038 MVDERNIKSYNLRKLRSCIALVSQEPTLFAG-TIRQNIVYG-------KEVATEAEIRKA 1089
+ E+ + + + +V Q L+ ++ +N+ +G KEV + + A
Sbjct: 61 FIGEKRMN--DTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVA 118
Query: 1090 AVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDS 1149
VL AH + LSGGQ+QR+A+ R ++ P + LLD+ S LD+
Sbjct: 119 EVLQLAH------------LLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDQPLSNLDA 166
Query: 1150 ASENLVQEALEKMM--VGRTCVVVAH-RLSTIQKADNIVVIKNGKVVEQG 1196
A ++ + ++ +GRT + V H ++ + AD IVV+ G+V + G
Sbjct: 167 ALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVG 216
Score = 63.5 bits (153), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 58/193 (30%), Positives = 93/193 (48%), Gaps = 17/193 (8%)
Query: 348 LVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFS-TS 406
VG SG GKST++ ++ G++ + ++ +G+V Q L+ S
Sbjct: 34 FVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDT--PPAERGVGMVFQSYALYPHLS 91
Query: 407 IKENILIGK--PGASMETV-VKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIA 463
+ EN+ G GA E + + Q A V L+ + LSGGQ+QR+A
Sbjct: 92 VAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKA--------LSGGQRQRVA 143
Query: 464 IARALIRDPKILLLDEATSALDAESERIVQEALDQASQ--GRTMIIIAH-RLSTIRKADL 520
I R L+ +P + LLD+ S LDA ++ + + + GRTMI + H ++ + AD
Sbjct: 144 IGRTLVAEPSVFLLDQPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADK 203
Query: 521 IGVLQSGRVIESG 533
I VL +GRV + G
Sbjct: 204 IVVLDAGRVAQVG 216
>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv From
Yersinia Pestis
pdb|4G1U|D Chain D, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv From
Yersinia Pestis
Length = 266
Score = 73.6 bits (179), Expect = 6e-13, Method: Composition-based stats.
Identities = 66/245 (26%), Positives = 120/245 (48%), Gaps = 24/245 (9%)
Query: 993 QMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKL 1052
Q + ++L I +G+ VA++G +G+GKST++ L+ + P G + +N+ S+ + L
Sbjct: 24 QALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKAL 83
Query: 1053 RSCIALVSQEPTL-FAGTIRQNIVYGKEVATEAEIRKA--AVLANAHEFISSTEDGYDTY 1109
A++ Q L F ++ + I G+ ++ R+A V+A + ++ + Y
Sbjct: 84 ARTRAVMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQT-DCLALAQRDYRV- 141
Query: 1110 CGERGVQLSGGQKQRIALARAVLK------NPMILLLDEATSALDSASEN----LVQEAL 1159
LSGG++QR+ LAR + + P L LDE TSALD + L+++
Sbjct: 142 -------LSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLT 194
Query: 1160 EKMMVGRTCVVVAHRLSTIQKADNIVVIKNGKVVEQGTQSSLLSMGNGGAYYSLIKMQAS 1219
+ + CV+ L+ + AD I+++ GK+V GT +L+ +Y + S
Sbjct: 195 RQEPLAVCCVLHDLNLAALY-ADRIMLLAQGKLVACGTPEEVLNAETLTQWYQ-ADLGVS 252
Query: 1220 RSPYS 1224
R P S
Sbjct: 253 RHPES 257
Score = 62.4 bits (150), Expect = 2e-09, Method: Composition-based stats.
Identities = 55/199 (27%), Positives = 92/199 (46%), Gaps = 17/199 (8%)
Query: 346 IGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQ-EPILFS 404
+ ++G +G+GKST++ LL + P G L G + Q K L ++ Q + F
Sbjct: 40 VAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRAVMRQYSELAFP 99
Query: 405 TSIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAI 464
S+ E I +G+ +A Q +M D + V LSGG++QR+ +
Sbjct: 100 FSVSEVIQMGRAPYGGSQDRQALQQ------VMAQTDCLALAQRDYRV-LSGGEQQRVQL 152
Query: 465 ARALIR------DPKILLLDEATSALDAESERIVQEALDQASQGRTMII--IAHRLS-TI 515
AR L + P+ L LDE TSALD ++ L Q ++ + + + H L+
Sbjct: 153 ARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAA 212
Query: 516 RKADLIGVLQSGRVIESGS 534
AD I +L G+++ G+
Sbjct: 213 LYADRIMLLAQGKLVACGT 231
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 71.2 bits (173), Expect = 3e-12, Method: Composition-based stats.
Identities = 54/213 (25%), Positives = 106/213 (49%), Gaps = 25/213 (11%)
Query: 999 LTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNI----KSYNLRKLRS 1054
++L+++ G+ + L+G SG GK+T + +I +P G + + ++ + K +
Sbjct: 22 MSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDR 81
Query: 1055 CIALVSQEPTLFAG-TIRQNIVYGKEV------ATEAEIRKAAVLANAHEFISSTEDGYD 1107
IA+V Q L+ T+ NI + ++ + +R+ A L E ++
Sbjct: 82 DIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLN------- 134
Query: 1108 TYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKM--MVG 1165
+ +LSGGQ+QR+AL RA+++ P + L+DE S LD+ ++ L+K+ +G
Sbjct: 135 ----RKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLG 190
Query: 1166 RTCVVVAH-RLSTIQKADNIVVIKNGKVVEQGT 1197
T + V H ++ + D I V+ G + + G+
Sbjct: 191 VTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGS 223
Score = 60.1 bits (144), Expect = 8e-09, Method: Composition-based stats.
Identities = 60/228 (26%), Positives = 105/228 (46%), Gaps = 25/228 (10%)
Query: 318 GKTLAYLRGEIEFKDVDFSYPTRPDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLD 377
G+ A +E KD +F + L+G SG GK+T + ++ +P +G I +
Sbjct: 14 GEVTAVREMSLEVKDGEF----------MILLGPSGCGKTTTLRMIAGLEEPSRGQIYI- 62
Query: 378 GHKI-----KKLQLKWLRSQMGLVNQEPILFS-TSIKENILIGKPGASMETVVKAAQAAN 431
G K+ K + + + +V Q L+ ++ +NI + V +
Sbjct: 63 GDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFP---LKLRKVPRQEIDQR 119
Query: 432 VHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERI 491
V + L G + + +LSGGQ+QR+A+ RA++R P++ L+DE S LDA+
Sbjct: 120 VREVAELL--GLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVR 177
Query: 492 VQEALD--QASQGRTMIIIAH-RLSTIRKADLIGVLQSGRVIESGSHD 536
++ L Q G T I + H ++ + D I V+ G + + GS D
Sbjct: 178 MRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPD 225
>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp-
Binding Protein
Length = 375
Score = 70.9 bits (172), Expect = 5e-12, Method: Composition-based stats.
Identities = 60/216 (27%), Positives = 103/216 (47%), Gaps = 17/216 (7%)
Query: 992 DQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNI----KSY 1047
D K L+L+I+ G+ + L+G SG GK+T + I +P G + +++ + K
Sbjct: 18 DVTAVKDLSLEIKDGEFLVLLGPSGCGKTTTLRXIAGLEEPTRGQIYIEDNLVADPEKGV 77
Query: 1048 NLRKLRSCIALVSQEPTLFA-GTIRQNIVYGKEV--ATEAEIRKAAVLANAHEFISSTED 1104
+ +A V Q L+ T+ NI + ++ + EI K + E + TE
Sbjct: 78 FVPPKERDVAXVFQSYALYPHXTVYDNIAFPLKLRKVPKQEIDKR--VREVAEXLGLTE- 134
Query: 1105 GYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKM-- 1162
+ +LSGGQ+QR+AL RA+++ P + L DE S LD+ + L+K+
Sbjct: 135 ----LLNRKPRELSGGQRQRVALGRAIIRRPKVFLXDEPLSNLDAKLRVKXRAELKKLQR 190
Query: 1163 MVGRTCVVVAH-RLSTIQKADNIVVIKNGKVVEQGT 1197
+G T + V H ++ D I V G++ + GT
Sbjct: 191 QLGVTTIYVTHDQVEAXTXGDRIAVXNKGELQQVGT 226
Score = 61.6 bits (148), Expect = 2e-09, Method: Composition-based stats.
Identities = 63/237 (26%), Positives = 102/237 (43%), Gaps = 23/237 (9%)
Query: 308 VPVINSEDEIGKTLAYLRGEIEFKDVDFSYPTRPDTPTIGLVGSSGSGKSTVISLLERFY 367
V +IN G A +E KD +F + L+G SG GK+T + +
Sbjct: 7 VKLINIWKRFGDVTAVKDLSLEIKDGEF----------LVLLGPSGCGKTTTLRXIAGLE 56
Query: 368 DPVKGNILLDGHKI----KKLQLKWLRSQMGLVNQEPILFS-TSIKENILIGKPGASMET 422
+P +G I ++ + + K + + + V Q L+ ++ +NI +
Sbjct: 57 EPTRGQIYIEDNLVADPEKGVFVPPKERDVAXVFQSYALYPHXTVYDNIAFP---LKLRK 113
Query: 423 VVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATS 482
V K V + L G + + +LSGGQ+QR+A+ RA+IR PK+ L DE S
Sbjct: 114 VPKQEIDKRVREVAEXL--GLTELLNRKPRELSGGQRQRVALGRAIIRRPKVFLXDEPLS 171
Query: 483 ALDAESERIVQEALD--QASQGRTMIIIAH-RLSTIRKADLIGVLQSGRVIESGSHD 536
LDA+ + L Q G T I + H ++ D I V G + + G+ D
Sbjct: 172 NLDAKLRVKXRAELKKLQRQLGVTTIYVTHDQVEAXTXGDRIAVXNKGELQQVGTPD 228
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An Atp-
Binding Cassette Of An Abc Transporter
Length = 257
Score = 68.6 bits (166), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/218 (25%), Positives = 104/218 (47%), Gaps = 26/218 (11%)
Query: 998 GLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKL-RSCI 1056
G+++ + G ++G +GSGKST+I +I F G V + ++I + +L I
Sbjct: 25 GVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGI 84
Query: 1057 ALVSQEP-TLFAGTIRQNIV---------------YGKEVATEAEIRKAAVLANAHEFIS 1100
Q P L T+ +N++ Y K + E E+ + A EF+
Sbjct: 85 VRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAF--KILEFLK 142
Query: 1101 STEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSA-SENLVQEAL 1159
+ YD GE LSGGQ + + + RA++ NP ++++DE + + + ++ L
Sbjct: 143 LSHL-YDRKAGE----LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVL 197
Query: 1160 EKMMVGRTCVVVAHRLSTI-QKADNIVVIKNGKVVEQG 1196
E G T +++ HRL + D++ V+ NG+++ +G
Sbjct: 198 ELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEG 235
Score = 67.8 bits (164), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 61/206 (29%), Positives = 107/206 (51%), Gaps = 28/206 (13%)
Query: 348 LVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVN--QEP-ILFS 404
++G +GSGKST+I+++ F +G + + I + L G+V Q P L
Sbjct: 38 IIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAEL-YHYGIVRTFQTPQPLKE 96
Query: 405 TSIKENILIGK--PGAS-------------METVVKAAQAANVHDFIMKLNDGYETKVGQ 449
++ EN+LIG+ PG S E +V+ +A + +F +KL+ Y+ K G+
Sbjct: 97 MTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVE--KAFKILEF-LKLSHLYDRKAGE 153
Query: 450 FGVQLSGGQKQRIAIARALIRDPKILLLDEATSAL-DAESERIVQEALDQASQGRTMIII 508
LSGGQ + + I RAL+ +PK++++DE + + + I L+ ++G T +II
Sbjct: 154 ----LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLII 209
Query: 509 AHRLSTI-RKADLIGVLQSGRVIESG 533
HRL + D + V+ +G++I G
Sbjct: 210 EHRLDIVLNYIDHLYVMFNGQIIAEG 235
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 67.8 bits (164), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 56/218 (25%), Positives = 102/218 (46%), Gaps = 26/218 (11%)
Query: 998 GLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKL-RSCI 1056
G+++ + G ++G +GSGKST+I +I F G V + ++I + +L I
Sbjct: 25 GVSISVCKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGI 84
Query: 1057 ALVSQEP----------TLFAGTIR------QNIVYGKEVATEAEIRKAAVLANAHEFIS 1100
Q P L G I ++ Y K + E E+ + A EF+
Sbjct: 85 VRTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKKWIPKEEEMVEKAF--KILEFLK 142
Query: 1101 STEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSA-SENLVQEAL 1159
+ YD GE LSGGQ + + + RA++ NP ++++DE + + + ++ L
Sbjct: 143 LSHL-YDRKAGE----LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVL 197
Query: 1160 EKMMVGRTCVVVAHRLSTI-QKADNIVVIKNGKVVEQG 1196
E G T +++ HRL + D++ V+ NG+++ +G
Sbjct: 198 ELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEG 235
Score = 67.8 bits (164), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 61/206 (29%), Positives = 107/206 (51%), Gaps = 28/206 (13%)
Query: 348 LVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVN--QEP-ILFS 404
++G +GSGKST+I+++ F +G + + I + L G+V Q P L
Sbjct: 38 IIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAEL-YHYGIVRTFQTPQPLKE 96
Query: 405 TSIKENILIGK--PGAS-------------METVVKAAQAANVHDFIMKLNDGYETKVGQ 449
++ EN+LIG+ PG S E +V+ +A + +F +KL+ Y+ K G+
Sbjct: 97 MTVLENLLIGEINPGESPLNSLFYKKWIPKEEEMVE--KAFKILEF-LKLSHLYDRKAGE 153
Query: 450 FGVQLSGGQKQRIAIARALIRDPKILLLDEATSAL-DAESERIVQEALDQASQGRTMIII 508
LSGGQ + + I RAL+ +PK++++DE + + + I L+ ++G T +II
Sbjct: 154 ----LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLII 209
Query: 509 AHRLSTI-RKADLIGVLQSGRVIESG 533
HRL + D + V+ +G++I G
Sbjct: 210 EHRLDIVLNYIDHLYVMFNGQIIAEG 235
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding Cassette
From An Abc Transporter
Length = 257
Score = 66.6 bits (161), Expect = 9e-11, Method: Composition-based stats.
Identities = 55/218 (25%), Positives = 102/218 (46%), Gaps = 26/218 (11%)
Query: 998 GLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKL-RSCI 1056
G+++ + G ++G +GSGKST+I +I F G V + ++I + +L I
Sbjct: 25 GVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGI 84
Query: 1057 ALVSQEP----------TLFAGTIR------QNIVYGKEVATEAEIRKAAVLANAHEFIS 1100
Q P L G I ++ Y K + E E+ + A EF+
Sbjct: 85 VRTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKKWIPKEEEMVEKAF--KILEFLK 142
Query: 1101 STEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSA-SENLVQEAL 1159
+ YD GE LSGGQ + + + RA++ NP ++++D+ + + + ++ L
Sbjct: 143 LSHL-YDRKAGE----LSGGQMKLVEIGRALMTNPKMIVMDQPIAGVAPGLAHDIFNHVL 197
Query: 1160 EKMMVGRTCVVVAHRLSTI-QKADNIVVIKNGKVVEQG 1196
E G T +++ HRL + D++ V+ NG+++ +G
Sbjct: 198 ELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEG 235
Score = 65.9 bits (159), Expect = 1e-10, Method: Composition-based stats.
Identities = 60/206 (29%), Positives = 107/206 (51%), Gaps = 28/206 (13%)
Query: 348 LVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVN--QEPI-LFS 404
++G +GSGKST+I+++ F +G + + I + L G+V Q P L
Sbjct: 38 IIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELY-HYGIVRTFQTPQPLKE 96
Query: 405 TSIKENILIGK--PGAS-------------METVVKAAQAANVHDFIMKLNDGYETKVGQ 449
++ EN+LIG+ PG S E +V+ +A + +F +KL+ Y+ K G+
Sbjct: 97 MTVLENLLIGEINPGESPLNSLFYKKWIPKEEEMVE--KAFKILEF-LKLSHLYDRKAGE 153
Query: 450 FGVQLSGGQKQRIAIARALIRDPKILLLDEATSAL-DAESERIVQEALDQASQGRTMIII 508
LSGGQ + + I RAL+ +PK++++D+ + + + I L+ ++G T +II
Sbjct: 154 ----LSGGQMKLVEIGRALMTNPKMIVMDQPIAGVAPGLAHDIFNHVLELKAKGITFLII 209
Query: 509 AHRLSTI-RKADLIGVLQSGRVIESG 533
HRL + D + V+ +G++I G
Sbjct: 210 EHRLDIVLNYIDHLYVMFNGQIIAEG 235
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 65.5 bits (158), Expect = 2e-10, Method: Composition-based stats.
Identities = 57/210 (27%), Positives = 103/210 (49%), Gaps = 9/210 (4%)
Query: 997 KGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKL-RSC 1055
KG+ LK+ G+ V L+G +G+GK+T + I Q G ++ + ++I + + R
Sbjct: 23 KGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRXG 82
Query: 1056 IALVSQEPTLFAG-TIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERG 1114
IALV + +F T+ +N+ G + E K + E+I S + G
Sbjct: 83 IALVPEGRRIFPELTVYENLXXGAYNRKDKEGIKRDL-----EWIFSLFPRLKERLKQLG 137
Query: 1115 VQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHR 1174
LSGG++Q +A+ RA+ P +L DE + L + V E ++K+ T +++ +
Sbjct: 138 GTLSGGEQQXLAIGRALXSRPKLLXXDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQ 197
Query: 1175 --LSTIQKADNIVVIKNGKVVEQGTQSSLL 1202
L ++ A V++ G++V +G S LL
Sbjct: 198 NALGALKVAHYGYVLETGQIVLEGKASELL 227
Score = 60.8 bits (146), Expect = 4e-09, Method: Composition-based stats.
Identities = 53/203 (26%), Positives = 96/203 (47%), Gaps = 9/203 (4%)
Query: 341 PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWL-RSQMGLVNQE 399
P + L+G++G+GK+T +S + KG I+ +G I + R + LV +
Sbjct: 30 PRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRXGIALVPEG 89
Query: 400 PILF-STSIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQ 458
+F ++ EN+ G + +K ++I L + ++ Q G LSGG+
Sbjct: 90 RRIFPELTVYENLXXGAYNRKDKEGIKRDL-----EWIFSLFPRLKERLKQLGGTLSGGE 144
Query: 459 KQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQASQGRTMIIIAHR--LSTIR 516
+Q +AI RAL PK+L DE + L V E + + +Q T I++ + L ++
Sbjct: 145 QQXLAIGRALXSRPKLLXXDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALK 204
Query: 517 KADLIGVLQSGRVIESGSHDVLM 539
A VL++G+++ G L+
Sbjct: 205 VAHYGYVLETGQIVLEGKASELL 227
>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter.
pdb|2NQ2|D Chain D, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter
Length = 253
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 62/245 (25%), Positives = 116/245 (47%), Gaps = 31/245 (12%)
Query: 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSV 1037
+ ++N+ F Y + + +F+ L + G +A++GQ+G GKST++ L+ + P G +
Sbjct: 5 LSVENLGFYY--QAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKI 62
Query: 1038 MVDERNIKSYNLRKLRSCIALVSQ---EPTLFAGTIRQNIVYGK--EVATEAEIRKA--A 1090
V + I V Q P FA ++ ++ G+ + T A+ +
Sbjct: 63 EVYQ-------------SIGFVPQFFSSP--FAYSVLDIVLMGRSTHINTFAKPKSHDYQ 107
Query: 1091 VLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSA 1150
V A ++++ T + LSGGQ+Q I +ARA+ ++LLDE TSALD A
Sbjct: 108 VAMQALDYLNLTHLAKREFTS-----LSGGQRQLILIARAIASECKLILLDEPTSALDLA 162
Query: 1151 SENLVQEALEKMMVGR--TCVVVAHRLSTIQKADNIVVIKNGKVVEQGTQSSLLSMGNGG 1208
++++V L + + T V H+ + + N ++ N + + G ++L+ N
Sbjct: 163 NQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQNFKFGETRNILTSENLT 222
Query: 1209 AYYSL 1213
A + L
Sbjct: 223 ALFHL 227
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 81/170 (47%), Gaps = 27/170 (15%)
Query: 346 IGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQ---EPIL 402
+ ++G +G GKST++ LL + P++G I + +G V Q P
Sbjct: 34 LAVLGQNGCGKSTLLDLLLGIHRPIQGKI-------------EVYQSIGFVPQFFSSP-- 78
Query: 403 FSTSIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFG----VQLSGGQ 458
F+ S+ + +L+G+ T + HD+ + + + LSGGQ
Sbjct: 79 FAYSVLDIVLMGR-----STHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQ 133
Query: 459 KQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQASQGRTMIII 508
+Q I IARA+ + K++LLDE TSALD ++ IV L +Q + M ++
Sbjct: 134 RQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVV 183
>pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|D Chain D, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|H Chain H, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|I Chain I, Crystal Structure Of E159q Mutant Of Btucdf
Length = 249
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 64/229 (27%), Positives = 111/229 (48%), Gaps = 29/229 (12%)
Query: 999 LTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIAL 1058
L+ ++ AG+ + LVG +G+GKST++ + + GS+ + +++++ KL A
Sbjct: 19 LSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHRAY 77
Query: 1059 VSQEPT-LFAGTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQL 1117
+SQ+ T FA + + + T E+ A A D G QL
Sbjct: 78 LSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALA----------LDDKLGRSTNQL 127
Query: 1118 SGGQKQRIALARAVLK-----NP--MILLLDEATSALDSASENLVQEALEKMMV-----G 1165
SGG+ QR+ LA VL+ NP +LLLD+ ++LD A Q AL+K++ G
Sbjct: 128 SGGEWQRVRLAAVVLQITPQANPAGQLLLLDQPMNSLDVAQ----QSALDKILSALSQQG 183
Query: 1166 RTCVVVAHRLS-TIQKADNIVVIKNGKVVEQGTQSSLLSMGNGGAYYSL 1213
V+ +H L+ T++ A ++K GK++ G + +L+ N Y +
Sbjct: 184 LAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTPPNLAQAYGM 232
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 51/212 (24%), Positives = 106/212 (50%), Gaps = 29/212 (13%)
Query: 346 IGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGL-----VNQEP 400
+ LVG +G+GKST+++ + KG+I G ++ W +++ L Q+
Sbjct: 29 LHLVGPNGAGKSTLLARMAGMTSG-KGSIQFAGQPLEA----WSATKLALHRAYLSQQQT 83
Query: 401 ILFSTSIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQ 460
F+T + + + + + ++ A + L+D K+G+ QLSGG+ Q
Sbjct: 84 PPFATPVWHYLTLHQHDKTRTELLNDVAGA------LALDD----KLGRSTNQLSGGEWQ 133
Query: 461 RIAIARALIR-----DP--KILLLDEATSALDAESERIVQEALDQAS-QGRTMIIIAHRL 512
R+ +A +++ +P ++LLLD+ ++LD + + + L S QG +++ +H L
Sbjct: 134 RVRLAAVVLQITPQANPAGQLLLLDQPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDL 193
Query: 513 S-TIRKADLIGVLQSGRVIESGSHDVLMQMNN 543
+ T+R A +L+ G+++ SG + ++ N
Sbjct: 194 NHTLRHAHRAWLLKGGKMLASGRREEVLTPPN 225
>pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
pdb|4FI3|D Chain D, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
Length = 249
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 64/229 (27%), Positives = 110/229 (48%), Gaps = 29/229 (12%)
Query: 999 LTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIAL 1058
L+ ++ AG+ + LVG +G+GKST++ + + GS+ + +++++ KL A
Sbjct: 19 LSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHRAY 77
Query: 1059 VSQEPT-LFAGTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQL 1117
+SQ+ T FA + + + T E+ A A D G QL
Sbjct: 78 LSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALA----------LDDKLGRSTNQL 127
Query: 1118 SGGQKQRIALARAVLK-----NP--MILLLDEATSALDSASENLVQEALEKMMV-----G 1165
SGG+ QR+ LA VL+ NP +LLLD+ +LD A Q AL+K++ G
Sbjct: 128 SGGEWQRVRLAAVVLQITPQANPAGQLLLLDQPMCSLDVAQ----QSALDKILSALSQQG 183
Query: 1166 RTCVVVAHRLS-TIQKADNIVVIKNGKVVEQGTQSSLLSMGNGGAYYSL 1213
V+ +H L+ T++ A ++K GK++ G + +L+ N Y +
Sbjct: 184 LAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTPPNLAQAYGM 232
Score = 47.4 bits (111), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 51/212 (24%), Positives = 105/212 (49%), Gaps = 29/212 (13%)
Query: 346 IGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGL-----VNQEP 400
+ LVG +G+GKST+++ + KG+I G ++ W +++ L Q+
Sbjct: 29 LHLVGPNGAGKSTLLARMAGMTSG-KGSIQFAGQPLEA----WSATKLALHRAYLSQQQT 83
Query: 401 ILFSTSIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQ 460
F+T + + + + + ++ A + L+D K+G+ QLSGG+ Q
Sbjct: 84 PPFATPVWHYLTLHQHDKTRTELLNDVAGA------LALDD----KLGRSTNQLSGGEWQ 133
Query: 461 RIAIARALIR-----DP--KILLLDEATSALDAESERIVQEALDQAS-QGRTMIIIAHRL 512
R+ +A +++ +P ++LLLD+ +LD + + + L S QG +++ +H L
Sbjct: 134 RVRLAAVVLQITPQANPAGQLLLLDQPMCSLDVAQQSALDKILSALSQQGLAIVMSSHDL 193
Query: 513 S-TIRKADLIGVLQSGRVIESGSHDVLMQMNN 543
+ T+R A +L+ G+++ SG + ++ N
Sbjct: 194 NHTLRHAHRAWLLKGGKMLASGRREEVLTPPN 225
>pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
pdb|2D2F|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
Length = 250
Score = 61.6 bits (148), Expect = 3e-09, Method: Composition-based stats.
Identities = 65/243 (26%), Positives = 114/243 (46%), Gaps = 24/243 (9%)
Query: 313 SEDEIGKTLAYLRGEIEFKDVDFSYPTRPDTPTIGLVGSSGSGKSTVISLL--ERFYDPV 370
S+ EI A + GE K V+ P L+G +G+GKST+ +L + Y
Sbjct: 2 SQLEIRDLWASIDGETILKGVNL---VVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVE 58
Query: 371 KGNILLDGHKIKKLQL-KWLRSQMGLVNQEPILFSTSIKENIL-------IGKPGASMET 422
+G ILLDG I +L + R + L Q P+ N L +G+ E
Sbjct: 59 RGEILLDGENILELSPDERARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEF 118
Query: 423 VVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATS 482
K +A + D+ ++ Y ++ G SGG+K+R I + L+ +P +LDE S
Sbjct: 119 WTKVKKALELLDW----DESYLSRYLNEG--FSGGEKKRNEILQLLVLEPTYAVLDETDS 172
Query: 483 ALDAESERIVQEALDQASQGRTM--IIIAH--RLSTIRKADLIGVLQSGRVIESGSHDVL 538
LD ++ ++V ++ A +G ++I H R+ + D + V+ GRV+ +G ++
Sbjct: 173 GLDIDALKVVARGVN-AMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVVATGGPELA 231
Query: 539 MQM 541
+++
Sbjct: 232 LEL 234
Score = 55.8 bits (133), Expect = 1e-07, Method: Composition-based stats.
Identities = 54/217 (24%), Positives = 97/217 (44%), Gaps = 19/217 (8%)
Query: 993 QMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLI--ERFYDPQSGSVMVDERNIKSYNL- 1049
+ I KG+ L + G+ AL+G +G+GKST+ ++ + Y + G +++D NI +
Sbjct: 16 ETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPD 75
Query: 1050 RKLRSCIALVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVLA-------NAHEFISST 1102
+ R + L Q P G N + +A +A++ + +A A E +
Sbjct: 76 ERARKGLFLAFQYPVEVPGVTIANFL---RLALQAKLGREVGVAEFWTKVKKALELLDWD 132
Query: 1103 EDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKM 1162
E Y E SGG+K+R + + ++ P +LDE S LD + +V + M
Sbjct: 133 ESYLSRYLNE---GFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAM 189
Query: 1163 M---VGRTCVVVAHRLSTIQKADNIVVIKNGKVVEQG 1196
G + R+ + D + V+ +G+VV G
Sbjct: 190 RGPNFGALVITHYQRILNYIQPDKVHVMMDGRVVATG 226
>pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake
pdb|1L7V|D Chain D, Bacterial Abc Transporter Involved In B12 Uptake
Length = 249
Score = 58.9 bits (141), Expect = 2e-08, Method: Composition-based stats.
Identities = 65/225 (28%), Positives = 107/225 (47%), Gaps = 25/225 (11%)
Query: 999 LTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQS--GSVMVDERNIKSYNLRKLRSCI 1056
L+ ++ AG+ + LVG +G+GKST L+ R S GS+ + +++++ KL
Sbjct: 19 LSGEVRAGEILHLVGPNGAGKST---LLARXAGXTSGKGSIQFAGQPLEAWSATKLALHR 75
Query: 1057 ALVSQEPT-LFAGTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGV 1115
A +SQ+ T FA + + + T E+ A A D G
Sbjct: 76 AYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALA----------LDDKLGRSTN 125
Query: 1116 QLSGGQKQRIALARAVLK-----NP--MILLLDEATSALDSASENLVQEALEKM-MVGRT 1167
QLSGG+ QR+ LA VL+ NP +LLLDE ++LD A ++ + + L + G
Sbjct: 126 QLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALDKILSALCQQGLA 185
Query: 1168 CVVVAHRLS-TIQKADNIVVIKNGKVVEQGTQSSLLSMGNGGAYY 1211
V +H L+ T++ A ++K GK + G + +L+ N Y
Sbjct: 186 IVXSSHDLNHTLRHAHRAWLLKGGKXLASGRREEVLTPPNLAQAY 230
Score = 46.6 bits (109), Expect = 8e-05, Method: Composition-based stats.
Identities = 54/212 (25%), Positives = 101/212 (47%), Gaps = 33/212 (15%)
Query: 348 LVGSSGSGKSTVISLLERFYDPV--KGNILLDGHKIKKLQLKWLRSQMGL-----VNQEP 400
LVG +G+GKST LL R KG+I G ++ W +++ L Q+
Sbjct: 31 LVGPNGAGKST---LLARXAGXTSGKGSIQFAGQPLEA----WSATKLALHRAYLSQQQT 83
Query: 401 ILFSTSIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQ 460
F+T + + + + + ++ A + L+D K+G+ QLSGG+ Q
Sbjct: 84 PPFATPVWHYLTLHQHDKTRTELLNDVAGA------LALDD----KLGRSTNQLSGGEWQ 133
Query: 461 RIAIARALIR-----DP--KILLLDEATSALDAESERIVQEALDQ-ASQGRTMIIIAHRL 512
R+ +A +++ +P ++LLLDE ++LD + + + L QG ++ +H L
Sbjct: 134 RVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALDKILSALCQQGLAIVXSSHDL 193
Query: 513 S-TIRKADLIGVLQSGRVIESGSHDVLMQMNN 543
+ T+R A +L+ G+ + SG + ++ N
Sbjct: 194 NHTLRHAHRAWLLKGGKXLASGRREEVLTPPN 225
>pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
pdb|2QI9|D Chain D, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
Length = 249
Score = 58.5 bits (140), Expect = 2e-08, Method: Composition-based stats.
Identities = 65/225 (28%), Positives = 107/225 (47%), Gaps = 25/225 (11%)
Query: 999 LTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQS--GSVMVDERNIKSYNLRKLRSCI 1056
L+ ++ AG+ + LVG +G+GKST L+ R S GS+ + +++++ KL
Sbjct: 19 LSGEVRAGEILHLVGPNGAGKST---LLARXAGXTSGKGSIQFAGQPLEAWSATKLALHR 75
Query: 1057 ALVSQEPT-LFAGTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGV 1115
A +SQ+ T FA + + + T E+ A A D G
Sbjct: 76 AYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALA----------LDDKLGRSTN 125
Query: 1116 QLSGGQKQRIALARAVLK-----NP--MILLLDEATSALDSASENLVQEALEKM-MVGRT 1167
QLSGG+ QR+ LA VL+ NP +LLLDE ++LD A ++ + + L + G
Sbjct: 126 QLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALDKILSALSQQGLA 185
Query: 1168 CVVVAHRLS-TIQKADNIVVIKNGKVVEQGTQSSLLSMGNGGAYY 1211
V +H L+ T++ A ++K GK + G + +L+ N Y
Sbjct: 186 IVXSSHDLNHTLRHAHRAWLLKGGKXLASGRREEVLTPPNLAQAY 230
Score = 47.4 bits (111), Expect = 5e-05, Method: Composition-based stats.
Identities = 55/212 (25%), Positives = 102/212 (48%), Gaps = 33/212 (15%)
Query: 348 LVGSSGSGKSTVISLLERFYDPV--KGNILLDGHKIKKLQLKWLRSQMGL-----VNQEP 400
LVG +G+GKST LL R KG+I G ++ W +++ L Q+
Sbjct: 31 LVGPNGAGKST---LLARXAGXTSGKGSIQFAGQPLEA----WSATKLALHRAYLSQQQT 83
Query: 401 ILFSTSIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQ 460
F+T + + + + + ++ A + L+D K+G+ QLSGG+ Q
Sbjct: 84 PPFATPVWHYLTLHQHDKTRTELLNDVAGA------LALDD----KLGRSTNQLSGGEWQ 133
Query: 461 RIAIARALIR-----DP--KILLLDEATSALDAESERIVQEALDQAS-QGRTMIIIAHRL 512
R+ +A +++ +P ++LLLDE ++LD + + + L S QG ++ +H L
Sbjct: 134 RVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALDKILSALSQQGLAIVXSSHDL 193
Query: 513 S-TIRKADLIGVLQSGRVIESGSHDVLMQMNN 543
+ T+R A +L+ G+ + SG + ++ N
Sbjct: 194 NHTLRHAHRAWLLKGGKXLASGRREEVLTPPN 225
>pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
pdb|2ZU0|D Chain D, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
Length = 267
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 56/93 (60%), Gaps = 3/93 (3%)
Query: 452 VQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQASQG-RTMIIIAH 510
V SGG+K+R I + + +P++ +LDE+ S LD ++ ++V + ++ G R+ II+ H
Sbjct: 163 VGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTH 222
Query: 511 --RLSTIRKADLIGVLQSGRVIESGSHDVLMQM 541
R+ K D + VL GR+++SG ++ Q+
Sbjct: 223 YQRILDYIKPDYVHVLYQGRIVKSGDFTLVKQL 255
Score = 53.5 bits (127), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 54/226 (23%), Positives = 104/226 (46%), Gaps = 31/226 (13%)
Query: 992 DQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLI--ERFYDPQSGSVMVDERNIKSYNL 1049
D+ I +GL+L + G+ A++G +GSGKST+ + Y+ G+V +++ + +
Sbjct: 32 DKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSP 91
Query: 1050 R-KLRSCIALVSQEPTLFAGTIRQ-------NIVY---GKEVATEAEIR-----KAAVLA 1093
+ I + Q P G Q N V G+E + + K A+L
Sbjct: 92 EDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLK 151
Query: 1094 NAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASEN 1153
+ ++ + + V SGG+K+R + + + P + +LDE+ S LD +
Sbjct: 152 MPEDLLTRSVN----------VGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALK 201
Query: 1154 LVQEALEKMMVG-RTCVVVAH--RLSTIQKADNIVVIKNGKVVEQG 1196
+V + + + G R+ ++V H R+ K D + V+ G++V+ G
Sbjct: 202 VVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSG 247
>pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|B Chain B, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|C Chain C, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|D Chain D, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
Length = 248
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 56/93 (60%), Gaps = 3/93 (3%)
Query: 452 VQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQASQG-RTMIIIAH 510
V SGG+K+R I + + +P++ +LDE+ S LD ++ ++V + ++ G R+ II+ H
Sbjct: 144 VGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTH 203
Query: 511 --RLSTIRKADLIGVLQSGRVIESGSHDVLMQM 541
R+ K D + VL GR+++SG ++ Q+
Sbjct: 204 YQRILDYIKPDYVHVLYQGRIVKSGDFTLVKQL 236
Score = 53.1 bits (126), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 54/226 (23%), Positives = 104/226 (46%), Gaps = 31/226 (13%)
Query: 992 DQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLI--ERFYDPQSGSVMVDERNIKSYNL 1049
D+ I +GL+L + G+ A++G +GSGKST+ + Y+ G+V +++ + +
Sbjct: 13 DKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSP 72
Query: 1050 R-KLRSCIALVSQEPTLFAGTIRQ-------NIVY---GKEVATEAEIR-----KAAVLA 1093
+ I + Q P G Q N V G+E + + K A+L
Sbjct: 73 EDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLK 132
Query: 1094 NAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASEN 1153
+ ++ + + V SGG+K+R + + + P + +LDE+ S LD +
Sbjct: 133 MPEDLLTRSVN----------VGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALK 182
Query: 1154 LVQEALEKMMVG-RTCVVVAH--RLSTIQKADNIVVIKNGKVVEQG 1196
+V + + + G R+ ++V H R+ K D + V+ G++V+ G
Sbjct: 183 VVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSG 228
>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
pdb|2IHY|B Chain B, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
Length = 279
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 59/242 (24%), Positives = 106/242 (43%), Gaps = 38/242 (15%)
Query: 993 QMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKS--YNLR 1050
+ I K ++ +I G L G +G+GK+T++ ++ + SG+V + + Y+
Sbjct: 34 KTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKXPGKVGYSAE 93
Query: 1051 KLRSCIALVSQE------------PTLFAGTIRQNIVY---GKEVATEAE--IRKAAVLA 1093
+R I VS + +G + VY E+ EA ++ A
Sbjct: 94 TVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGXSA 153
Query: 1094 NAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDS-ASE 1152
A ++I GY LS G+KQR+ +ARA+ P +L+LDE + LD A E
Sbjct: 154 KAQQYI-----GY----------LSTGEKQRVXIARALXGQPQVLILDEPAAGLDFIARE 198
Query: 1153 NLVQEALEKMMVGRTC--VVVAHRLSTIQ-KADNIVVIKNGKVVEQGTQSSLLSMGNGGA 1209
+L+ T + V H + I I+++K+G+ ++QG +L+ N
Sbjct: 199 SLLSILDSLSDSYPTLAXIYVTHFIEEITANFSKILLLKDGQSIQQGAVEDILTSENXSR 258
Query: 1210 YY 1211
++
Sbjct: 259 FF 260
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 72/152 (47%), Gaps = 24/152 (15%)
Query: 348 LVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKL--QLKWLRSQMGLVNQEPILFST 405
L G +G+GK+T++++L + G + L G K+ + +R +G V S
Sbjct: 52 LYGLNGAGKTTLLNILNAYEPATSGTVNLFGKXPGKVGYSAETVRQHIGFV-------SH 104
Query: 406 SIKENILIGKPGASMETVVKAA------------QAANVHDFIMKLNDGYETKVGQFGVQ 453
S+ E G+ ++ V+ A + N ++KL G K Q+
Sbjct: 105 SLLEKFQEGE--RVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLV-GXSAKAQQYIGY 161
Query: 454 LSGGQKQRIAIARALIRDPKILLLDEATSALD 485
LS G+KQR+ IARAL P++L+LDE + LD
Sbjct: 162 LSTGEKQRVXIARALXGQPQVLILDEPAAGLD 193
>pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From
Pyrococcus Furiosus Pfu-867808-001
Length = 214
Score = 52.4 bits (124), Expect = 2e-06, Method: Composition-based stats.
Identities = 43/201 (21%), Positives = 97/201 (48%), Gaps = 24/201 (11%)
Query: 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSV 1037
+E++++ Y D+ + + +T+ IE G V G +G GK+T++ I + P G +
Sbjct: 11 LEIRDLSVGY----DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEI 66
Query: 1038 MVDERNIKSYNLRKLRSCIALVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVL----A 1093
+ + + K++ I + +E I+ ++++ E ++ A L
Sbjct: 67 IYN-----GVPITKVKGKIFFLPEE-----------IIVPRKISVEDYLKAVASLYGVKV 110
Query: 1094 NAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASEN 1153
N +E + + E ++ +LS G +R+ LA +L N I +LD+ A+D S++
Sbjct: 111 NKNEIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKH 170
Query: 1154 LVQEALEKMMVGRTCVVVAHR 1174
V +++ +++ + V+++ R
Sbjct: 171 KVLKSILEILKEKGIVIISSR 191
Score = 46.6 bits (109), Expect = 9e-05, Method: Composition-based stats.
Identities = 36/162 (22%), Positives = 77/162 (47%), Gaps = 12/162 (7%)
Query: 350 GSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFSTSIKE 409
G +G GK+T++ + + P+KG I+ +G I K++ K ++ I +K
Sbjct: 42 GPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPEEIIVPRKISVEDYLKA 101
Query: 410 NILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALI 469
+ + ++ A ++ V D KL +LS G +R+ +A L+
Sbjct: 102 VASLYGVKVNKNEIMDALESVEVLDLKKKLG------------ELSQGTIRRVQLASTLL 149
Query: 470 RDPKILLLDEATSALDAESERIVQEALDQASQGRTMIIIAHR 511
+ +I +LD+ A+D +S+ V +++ + + + ++II+ R
Sbjct: 150 VNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSR 191
>pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified Dna
Length = 916
Score = 50.8 bits (120), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 62/122 (50%), Gaps = 11/122 (9%)
Query: 442 GYETKVGQFGVQLSGGQKQRIAIARAL-IRDP--KILLLDEATSALDAESERIVQEALDQ 498
GY K+GQ LSGG+ QRI +A L RD + +LDE T L E R + E L +
Sbjct: 795 GY-VKLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHR 853
Query: 499 -ASQGRTMIIIAHRLSTIRKADLI------GVLQSGRVIESGSHDVLMQMNNGEGGAYSK 551
+G T+I+I H L I+ AD I G + G ++ +G+ + + + + G + K
Sbjct: 854 LVDRGNTVIVIEHNLDVIKNADHIIDLGPEGGKEGGYIVATGTPEEIAKNPHSYTGRFLK 913
Query: 552 MV 553
V
Sbjct: 914 NV 915
Score = 43.9 bits (102), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 49/101 (48%), Gaps = 10/101 (9%)
Query: 1111 GERGVQLSGGQKQRIALARAVLKNPM---ILLLDEATSALDSASENLVQEALEKMM-VGR 1166
G+ LSGG+ QRI LA + K + +LDE T L + E L +++ G
Sbjct: 800 GQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGN 859
Query: 1167 TCVVVAHRLSTIQKADNIVVI------KNGKVVEQGTQSSL 1201
T +V+ H L I+ AD+I+ + + G +V GT +
Sbjct: 860 TVIVIEHNLDVIKNADHIIDLGPEGGKEGGYIVATGTPEEI 900
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 59/124 (47%), Gaps = 16/124 (12%)
Query: 1117 LSGGQKQRIALARAVLK--NPMILLLDEATSALDSASENLVQEALEKMM-VGRTCVVVAH 1173
LSGG+ QRI LA + +I +LDE T L + + L+K+ +G T +VV H
Sbjct: 465 LSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVEH 524
Query: 1174 RLSTIQKADNIVVI------KNGKVVEQGTQSSLLSMGNG---GAYYS----LIKMQASR 1220
I+ AD+I+ I G+VV QGT LL + G Y S + + R
Sbjct: 525 DEEVIRNADHIIDIGPGGGTNGGRVVFQGTVDELLKNPDSSLTGEYLSGKRKITVNKTRR 584
Query: 1221 SPYS 1224
PY+
Sbjct: 585 LPYA 588
Score = 36.2 bits (82), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 48/96 (50%), Gaps = 9/96 (9%)
Query: 454 LSGGQKQRIAIARALIRDPK--ILLLDEATSALDA-ESERIVQEALDQASQGRTMIIIAH 510
LSGG+ QRI +A + I +LDE T L ++ER+++ G T+I++ H
Sbjct: 465 LSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVEH 524
Query: 511 RLSTIRKADLI------GVLQSGRVIESGSHDVLMQ 540
IR AD I G GRV+ G+ D L++
Sbjct: 525 DEEVIRNADHIIDIGPGGGTNGGRVVFQGTVDELLK 560
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 50.4 bits (119), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 52/202 (25%), Positives = 99/202 (49%), Gaps = 21/202 (10%)
Query: 335 FSYPTRPDTPTIGLVGSSGSGKSTVISLLERFYDP--VKGNILLDG----HKIKKLQLKW 388
+ P + +G+VG +G+GKST + +L P N DG + +LQ +
Sbjct: 39 YRLPVVKEGXVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYF 98
Query: 389 LRSQMGLVNQEPILFSTSIKENILIGK--PGASMETVVKAAQAANVHDFI--MKLNDGYE 444
+ + G + P++ + LI K G +E + KA + + + + ++L + E
Sbjct: 99 EKLKNGEIR--PVVKPQYVD---LIPKAVKGKVIELLKKADETGKLEEVVKALELENVLE 153
Query: 445 TKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQAS-QGR 503
++ LSGG+ QR+AIA AL+R+ DE +S LD A+ + S +G+
Sbjct: 154 REIQH----LSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGK 209
Query: 504 TMIIIAHRLSTIRK-ADLIGVL 524
+++++ H L+ + +D+I V+
Sbjct: 210 SVLVVEHDLAVLDYLSDIIHVV 231
Score = 50.1 bits (118), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 82/178 (46%), Gaps = 33/178 (18%)
Query: 345 TIGLVGSSGSGKSTVISLLERFYDPVKGNILLD---GHKIKKLQLKWLRSQMGLVNQ--E 399
IG+VG +G GK+T + L +P +G I D +K + ++ + + L+++
Sbjct: 314 VIGIVGPNGIGKTTFVKXLAGVEEPTEGKIEWDLTVAYKPQYIKADYEGTVYELLSKIDA 373
Query: 400 PILFSTSIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQK 459
L S K +L KP + + D Y+ +V + LSGG+
Sbjct: 374 SKLNSNFYKTELL--KP--------------------LGIIDLYDREVNE----LSGGEL 407
Query: 460 QRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQASQG--RTMIIIAHRLSTI 515
QR+AIA L+RD I LLDE ++ LD E V A+ + +T +++ H + I
Sbjct: 408 QRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLXEKNEKTALVVEHDVLXI 465
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
Query: 1112 ERGVQ-LSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKM-MVGRTCV 1169
ER +Q LSGG+ QR+A+A A+L+N DE +S LD A+ ++ G++ +
Sbjct: 153 EREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVL 212
Query: 1170 VVAHRLSTIQKADNIVVIKNGK 1191
VV H L+ + +I+ + G+
Sbjct: 213 VVEHDLAVLDYLSDIIHVVYGE 234
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 82/194 (42%), Gaps = 27/194 (13%)
Query: 1002 KIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIALVSQ 1061
+I+ G+ + +VG +G GK+T + + +P G + D V+
Sbjct: 308 EIKKGEVIGIVGPNGIGKTTFVKXLAGVEEPTEGKIEWD----------------LTVAY 351
Query: 1062 EPTLFAGTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTE--DGYDTYCGERGVQLSG 1119
+P + VY E+ ++ + K E + D YD E LSG
Sbjct: 352 KPQYIKADY-EGTVY--ELLSKIDASKLNSNFYKTELLKPLGIIDLYDREVNE----LSG 404
Query: 1120 GQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMVG--RTCVVVAHRLST 1177
G+ QR+A+A +L++ I LLDE ++ LD V A+ + +T +VV H +
Sbjct: 405 GELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLXEKNEKTALVVEHDVLX 464
Query: 1178 IQKADNIVVIKNGK 1191
I + + + G+
Sbjct: 465 IDYVSDRLXVFEGE 478
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 50.1 bits (118), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 82/179 (45%), Gaps = 35/179 (19%)
Query: 345 TIGLVGSSGSGKSTVISLLERFYDPVKGNILLD---GHKIKKLQLKWLRSQMGLVNQEPI 401
IG+VG +G GK+T + +L +P +G + D +K + ++ ++ + L+++
Sbjct: 384 VIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYEGTVYELLSK--- 440
Query: 402 LFSTSIKENIL---IGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQ 458
+ S+ + N + KP ++ + NV D LSGG+
Sbjct: 441 IDSSKLNSNFYKTELLKPLGIIDLYDR-----NVED-------------------LSGGE 476
Query: 459 KQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQ--ASQGRTMIIIAHRLSTI 515
QR+AIA L+RD I LLDE ++ LD E V A+ +T +++ H + I
Sbjct: 477 LQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMI 535
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 65/279 (23%), Positives = 121/279 (43%), Gaps = 44/279 (15%)
Query: 262 EKGGLVFVAGICTI--LGGVGIMSALPNLS-FISQATTAATRIFEMIDRVP-----VINS 313
+K G +C + +GG I+ N I +A+ I + + P ++N
Sbjct: 32 DKCGHFLCERVCPVNRMGGEAIIIDEENYKPIIQEASCTGCGI--CVHKCPFNAISIVNL 89
Query: 314 EDEIGKTLAYLRGEIEFKDVDFSYPTRPDTPTIGLVGSSGSGKSTVISLLERFYDPVKGN 373
+++ + + G F V + P D +G+VG +G+GK+T + +L P N
Sbjct: 90 PEQLDEDCVHRYGVNAF--VLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIP---N 144
Query: 374 ILLDGHKIKKLQLKWLRSQMGLVNQEPILFSTSIKENILIGKPGASMETVVKAAQAANVH 433
+ D + ++ R L N L + I+ + KP ++ + KA + V
Sbjct: 145 LCEDNDSWDNV-IRAFRGNE-LQNYFERLKNGEIRPVV---KP-QYVDLLPKAVKG-KVR 197
Query: 434 DFIMKLNDGYETKVGQFGV----------------QLSGGQKQRIAIARALIRDPKILLL 477
+ + K+++ VG+F QLSGG+ QR+AIA AL+R
Sbjct: 198 ELLKKVDE-----VGKFEEVVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFF 252
Query: 478 DEATSALDAESERIVQEALDQ-ASQGRTMIIIAHRLSTI 515
DE +S LD V + + A++G+ ++++ H L+ +
Sbjct: 253 DEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVL 291
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 51/213 (23%), Positives = 89/213 (41%), Gaps = 33/213 (15%)
Query: 1002 KIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIALVSQ 1061
+I G+ + +VG +G GK+T + ++ +P G V D V+
Sbjct: 378 EIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWD----------------LTVAY 421
Query: 1062 EPTL----FAGTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQ- 1116
+P + GT+ + + + K +L D YD R V+
Sbjct: 422 KPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPL-----GIIDLYD-----RNVED 471
Query: 1117 LSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMVG--RTCVVVAHR 1174
LSGG+ QR+A+A +L++ I LLDE ++ LD V A+ +M +T +VV H
Sbjct: 472 LSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHD 531
Query: 1175 LSTIQKADNIVVIKNGKVVEQGTQSSLLSMGNG 1207
+ I + +++ G+ G + M G
Sbjct: 532 VLMIDYVSDRLIVFEGEPGRHGRALPPMGMREG 564
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 1116 QLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMM-VGRTCVVVAHR 1174
QLSGG+ QR+A+A A+L+ DE +S LD V + ++ G+ +VV H
Sbjct: 228 QLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHD 287
Query: 1175 LSTIQKADNIVVIKNGK 1191
L+ + +++ + G+
Sbjct: 288 LAVLDYLSDVIHVVYGE 304
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 50.1 bits (118), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 82/179 (45%), Gaps = 35/179 (19%)
Query: 345 TIGLVGSSGSGKSTVISLLERFYDPVKGNILLD---GHKIKKLQLKWLRSQMGLVNQEPI 401
IG+VG +G GK+T + +L +P +G + D +K + ++ ++ + L+++
Sbjct: 370 VIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYEGTVYELLSK--- 426
Query: 402 LFSTSIKENIL---IGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQ 458
+ S+ + N + KP ++ + NV D LSGG+
Sbjct: 427 IDSSKLNSNFYKTELLKPLGIIDLYDR-----NVED-------------------LSGGE 462
Query: 459 KQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQ--ASQGRTMIIIAHRLSTI 515
QR+AIA L+RD I LLDE ++ LD E V A+ +T +++ H + I
Sbjct: 463 LQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMI 521
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 65/279 (23%), Positives = 121/279 (43%), Gaps = 44/279 (15%)
Query: 262 EKGGLVFVAGICTI--LGGVGIMSALPNLS-FISQATTAATRIFEMIDRVP-----VINS 313
+K G +C + +GG I+ N I +A+ I + + P ++N
Sbjct: 18 DKCGHFLCERVCPVNRMGGEAIIIDEENYKPIIQEASCTGCGI--CVHKCPFNAISIVNL 75
Query: 314 EDEIGKTLAYLRGEIEFKDVDFSYPTRPDTPTIGLVGSSGSGKSTVISLLERFYDPVKGN 373
+++ + + G F V + P D +G+VG +G+GK+T + +L P N
Sbjct: 76 PEQLDEDCVHRYGVNAF--VLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIP---N 130
Query: 374 ILLDGHKIKKLQLKWLRSQMGLVNQEPILFSTSIKENILIGKPGASMETVVKAAQAANVH 433
+ D + ++ R L N L + I+ + KP ++ + KA + V
Sbjct: 131 LCEDNDSWDNV-IRAFRGNE-LQNYFERLKNGEIRPVV---KP-QYVDLLPKAVKG-KVR 183
Query: 434 DFIMKLNDGYETKVGQFGV----------------QLSGGQKQRIAIARALIRDPKILLL 477
+ + K+++ VG+F QLSGG+ QR+AIA AL+R
Sbjct: 184 ELLKKVDE-----VGKFEEVVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFF 238
Query: 478 DEATSALDAESERIVQEALDQ-ASQGRTMIIIAHRLSTI 515
DE +S LD V + + A++G+ ++++ H L+ +
Sbjct: 239 DEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVL 277
Score = 47.4 bits (111), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 51/213 (23%), Positives = 89/213 (41%), Gaps = 33/213 (15%)
Query: 1002 KIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIALVSQ 1061
+I G+ + +VG +G GK+T + ++ +P G V D V+
Sbjct: 364 EIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWD----------------LTVAY 407
Query: 1062 EPTL----FAGTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQ- 1116
+P + GT+ + + + K +L D YD R V+
Sbjct: 408 KPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPL-----GIIDLYD-----RNVED 457
Query: 1117 LSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMVG--RTCVVVAHR 1174
LSGG+ QR+A+A +L++ I LLDE ++ LD V A+ +M +T +VV H
Sbjct: 458 LSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHD 517
Query: 1175 LSTIQKADNIVVIKNGKVVEQGTQSSLLSMGNG 1207
+ I + +++ G+ G + M G
Sbjct: 518 VLMIDYVSDRLIVFEGEPGRHGRALPPMGMREG 550
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 1116 QLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMM-VGRTCVVVAHR 1174
QLSGG+ QR+A+A A+L+ DE +S LD V + ++ G+ +VV H
Sbjct: 214 QLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHD 273
Query: 1175 LSTIQKADNIVVIKNGK 1191
L+ + +++ + G+
Sbjct: 274 LAVLDYLSDVIHVVYGE 290
>pdb|2VF7|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|C Chain C, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
Length = 842
Score = 47.4 bits (111), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 52/101 (51%), Gaps = 10/101 (9%)
Query: 1111 GERGVQLSGGQKQRIALA---RAVLKNPMILLLDEATSALDSASENLVQEALEKMM-VGR 1166
G+ +LSGG+ QRI LA R + + +LDE T+ L A +Q L K++ G
Sbjct: 725 GQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGN 784
Query: 1167 TCVVVAHRLSTIQKADNIVVI------KNGKVVEQGTQSSL 1201
T + V H++ + +D ++ I G++V QGT + +
Sbjct: 785 TVIAVEHKMQVVAASDWVLDIGPGAGEDGGRLVAQGTPAEV 825
Score = 47.0 bits (110), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 52/92 (56%), Gaps = 5/92 (5%)
Query: 434 DFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPK---ILLLDEATSAL-DAESE 489
D + ++ GY ++GQ +LSGG+ QRI +A L R + + +LDE T+ L A+ E
Sbjct: 712 DTLREVGLGY-LRLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVE 770
Query: 490 RIVQEALDQASQGRTMIIIAHRLSTIRKADLI 521
R+ ++ + G T+I + H++ + +D +
Sbjct: 771 RLQRQLVKLVDAGNTVIAVEHKMQVVAASDWV 802
Score = 38.1 bits (87), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 47/94 (50%), Gaps = 9/94 (9%)
Query: 1117 LSGGQKQRIALARAVLKN--PMILLLDEATSALDSASENLVQEALEKMMV-GRTCVVVAH 1173
LS G+ QR+ LA + N ++ +LDE ++ L A + ALE + G + VV H
Sbjct: 380 LSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRGGNSLFVVEH 439
Query: 1174 RLSTIQKADNIVVI------KNGKVVEQGTQSSL 1201
L I++AD +V + K G+++ G L
Sbjct: 440 DLDVIRRADWLVDVGPEAGEKGGEILYSGPPEGL 473
>pdb|2R6F|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Uvra
pdb|2R6F|B Chain B, Crystal Structure Of Bacillus Stearothermophilus Uvra
Length = 972
Score = 46.6 bits (109), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 59/122 (48%), Gaps = 11/122 (9%)
Query: 442 GYETKVGQFGVQLSGGQKQRIAIARALIRDPK---ILLLDEATSALDAES-ERIVQEALD 497
GY K+GQ LSGG+ QR+ +A L R + +LDE T+ L + R++
Sbjct: 835 GY-XKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHR 893
Query: 498 QASQGRTMIIIAHRLSTIRKADLI------GVLQSGRVIESGSHDVLMQMNNGEGGAYSK 551
G T+++I H L I+ AD I G + G+++ G+ + + ++ G Y K
Sbjct: 894 LVDNGDTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVAVGTPEEVAEVKESHTGRYLK 953
Query: 552 MV 553
+
Sbjct: 954 PI 955
Score = 38.9 bits (89), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 50/101 (49%), Gaps = 10/101 (9%)
Query: 1111 GERGVQLSGGQKQRIALARAVLKNP---MILLLDEATSALDSASENLVQEALEKMM-VGR 1166
G+ LSGG+ QR+ LA + + + +LDE T+ L + + L +++ G
Sbjct: 840 GQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGD 899
Query: 1167 TCVVVAHRLSTIQKADNIVVI------KNGKVVEQGTQSSL 1201
T +V+ H L I+ AD I+ + + G++V GT +
Sbjct: 900 TVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVAVGTPEEV 940
Score = 32.7 bits (73), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 52/118 (44%), Gaps = 14/118 (11%)
Query: 1117 LSGGQKQRIALARAVLKN--PMILLLDEATSALDSASENLVQEALEKMM-VGRTCVVVAH 1173
LSGG+ QRI LA + ++ +LDE + L + + L+ +G T +VV H
Sbjct: 505 LSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSXRDLGNTLIVVEH 564
Query: 1174 RLSTIQKADNIVV------IKNGKVVEQGTQSSLLSMGNG--GAYYS---LIKMQASR 1220
T AD ++ I G+VV GT + + N G Y S I + A R
Sbjct: 565 DEDTXLAADYLIDIGPGAGIHGGEVVAAGTPEEVXNDPNSLTGQYLSGKKFIPIPAER 622
Score = 30.0 bits (66), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 20/28 (71%)
Query: 996 FKGLTLKIEAGKTVALVGQSGSGKSTII 1023
K +++KI G VA+ G SGSGKST++
Sbjct: 640 LKNVSVKIPLGTFVAVTGVSGSGKSTLV 667
>pdb|3UWX|A Chain A, Crystal Structure Of Uvra-Uvrb Complex
Length = 972
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 59/122 (48%), Gaps = 11/122 (9%)
Query: 442 GYETKVGQFGVQLSGGQKQRIAIARALIRDPK---ILLLDEATSALDAES-ERIVQEALD 497
GY K+GQ LSGG+ QR+ +A L R + +LDE T+ L + R++
Sbjct: 835 GY-MKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHR 893
Query: 498 QASQGRTMIIIAHRLSTIRKADLI------GVLQSGRVIESGSHDVLMQMNNGEGGAYSK 551
G T+++I H L I+ AD I G + G+++ G+ + + ++ G Y K
Sbjct: 894 LVDNGDTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVAVGTPEEVAEVKESHTGRYLK 953
Query: 552 MV 553
+
Sbjct: 954 PI 955
Score = 38.9 bits (89), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 50/101 (49%), Gaps = 10/101 (9%)
Query: 1111 GERGVQLSGGQKQRIALARAVLKNP---MILLLDEATSALDSASENLVQEALEKMM-VGR 1166
G+ LSGG+ QR+ LA + + + +LDE T+ L + + L +++ G
Sbjct: 840 GQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGD 899
Query: 1167 TCVVVAHRLSTIQKADNIVVI------KNGKVVEQGTQSSL 1201
T +V+ H L I+ AD I+ + + G++V GT +
Sbjct: 900 TVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVAVGTPEEV 940
Score = 37.0 bits (84), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 55/118 (46%), Gaps = 14/118 (11%)
Query: 1117 LSGGQKQRIALARAVLKN--PMILLLDEATSALDSASENLVQEALEKMM-VGRTCVVVAH 1173
LSGG+ QRI LA + ++ +LDE + L + + L+ M +G T +VV H
Sbjct: 505 LSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEH 564
Query: 1174 RLSTIQKADNIVV------IKNGKVVEQGTQSSLLSMGNG--GAYYS---LIKMQASR 1220
T+ AD ++ I G+VV GT +++ N G Y S I + A R
Sbjct: 565 DEDTMLAADYLIDIGPGAGIHGGEVVAAGTPEEVMNDPNSLTGQYLSGKKFIPIPAER 622
Score = 30.0 bits (66), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 20/28 (71%)
Query: 996 FKGLTLKIEAGKTVALVGQSGSGKSTII 1023
K +++KI G VA+ G SGSGKST++
Sbjct: 640 LKNVSVKIPLGTFVAVTGVSGSGKSTLV 667
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 36/57 (63%), Gaps = 2/57 (3%)
Query: 1117 LSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAH 1173
LSGG K ++ALARAVL+N ILLLDE T+ LD+ + + L G T + ++H
Sbjct: 549 LSGGWKXKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLN--TCGITSITISH 603
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 36/57 (63%), Gaps = 2/57 (3%)
Query: 454 LSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQASQGRTMIIIAH 510
LSGG K ++A+ARA++R+ ILLLDE T+ LD + + L+ G T I I+H
Sbjct: 549 LSGGWKXKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTC--GITSITISH 603
Score = 40.4 bits (93), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 43/81 (53%), Gaps = 3/81 (3%)
Query: 1117 LSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLS 1176
LSGGQK ++ LA + P +++LDE T+ LD S + +AL++ G +++ H
Sbjct: 902 LSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGG--VIIITHSAE 959
Query: 1177 -TIQKADNIVVIKNGKVVEQG 1196
T + + +K+G+ G
Sbjct: 960 FTKNLTEEVWAVKDGRXTPSG 980
Score = 40.4 bits (93), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 45/83 (54%), Gaps = 3/83 (3%)
Query: 454 LSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQASQGRTMIIIAHRLS 513
LSGGQK ++ +A + P +++LDE T+ LD +S + +AL + G +III H
Sbjct: 902 LSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGG--VIIITHSAE 959
Query: 514 TIRK-ADLIGVLQSGRVIESGSH 535
+ + + ++ GR SG +
Sbjct: 960 FTKNLTEEVWAVKDGRXTPSGHN 982
Score = 36.2 bits (82), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Query: 963 DPKASEDIEEPTKGFIELKNVFFSYP--SRPDQMIFKGLTLKIEAGKTVALVGQSGSGKS 1020
+P E ++ K +++ N F YP S+P + + +A++G +G+GKS
Sbjct: 657 EPGYLEGVKTKQKAIVKVTNXEFQYPGTSKPQ---ITDINFQCSLSSRIAVIGPNGAGKS 713
Query: 1021 TIIGLIERFYDPQSGSVMVDE 1041
T+I ++ P SG V E
Sbjct: 714 TLINVLTGELLPTSGEVYTHE 734
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 36/57 (63%), Gaps = 2/57 (3%)
Query: 1117 LSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAH 1173
LSGG K ++ALARAVL+N ILLLDE T+ LD+ + + L G T + ++H
Sbjct: 543 LSGGWKXKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLN--TCGITSITISH 597
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 36/57 (63%), Gaps = 2/57 (3%)
Query: 454 LSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQASQGRTMIIIAH 510
LSGG K ++A+ARA++R+ ILLLDE T+ LD + + L+ G T I I+H
Sbjct: 543 LSGGWKXKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTC--GITSITISH 597
Score = 40.4 bits (93), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 43/81 (53%), Gaps = 3/81 (3%)
Query: 1117 LSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLS 1176
LSGGQK ++ LA + P +++LDE T+ LD S + +AL++ G +++ H
Sbjct: 896 LSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGG--VIIITHSAE 953
Query: 1177 -TIQKADNIVVIKNGKVVEQG 1196
T + + +K+G+ G
Sbjct: 954 FTKNLTEEVWAVKDGRXTPSG 974
Score = 40.4 bits (93), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 45/83 (54%), Gaps = 3/83 (3%)
Query: 454 LSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQASQGRTMIIIAHRLS 513
LSGGQK ++ +A + P +++LDE T+ LD +S + +AL + G +III H
Sbjct: 896 LSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGG--VIIITHSAE 953
Query: 514 TIRK-ADLIGVLQSGRVIESGSH 535
+ + + ++ GR SG +
Sbjct: 954 FTKNLTEEVWAVKDGRXTPSGHN 976
Score = 36.2 bits (82), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Query: 963 DPKASEDIEEPTKGFIELKNVFFSYP--SRPDQMIFKGLTLKIEAGKTVALVGQSGSGKS 1020
+P E ++ K +++ N F YP S+P + + +A++G +G+GKS
Sbjct: 651 EPGYLEGVKTKQKAIVKVTNXEFQYPGTSKPQ---ITDINFQCSLSSRIAVIGPNGAGKS 707
Query: 1021 TIIGLIERFYDPQSGSVMVDE 1041
T+I ++ P SG V E
Sbjct: 708 TLINVLTGELLPTSGEVYTHE 728
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 36/57 (63%), Gaps = 2/57 (3%)
Query: 1117 LSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAH 1173
LSGG K ++ALARAVL+N ILLLDE T+ LD+ + + L G T + ++H
Sbjct: 549 LSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLN--TCGITSITISH 603
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 36/57 (63%), Gaps = 2/57 (3%)
Query: 454 LSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQASQGRTMIIIAH 510
LSGG K ++A+ARA++R+ ILLLDE T+ LD + + L+ G T I I+H
Sbjct: 549 LSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTC--GITSITISH 603
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 46/83 (55%), Gaps = 3/83 (3%)
Query: 454 LSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQASQGRTMIIIAHRLS 513
LSGGQK ++ +A + P +++LDE T+ LD +S + +AL + G +III H
Sbjct: 902 LSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGG--VIIITHSAE 959
Query: 514 TIRK-ADLIGVLQSGRVIESGSH 535
+ + + ++ GR+ SG +
Sbjct: 960 FTKNLTEEVWAVKDGRMTPSGHN 982
Score = 40.8 bits (94), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 44/81 (54%), Gaps = 3/81 (3%)
Query: 1117 LSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLS 1176
LSGGQK ++ LA + P +++LDE T+ LD S + +AL++ G +++ H
Sbjct: 902 LSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGG--VIIITHSAE 959
Query: 1177 -TIQKADNIVVIKNGKVVEQG 1196
T + + +K+G++ G
Sbjct: 960 FTKNLTEEVWAVKDGRMTPSG 980
Score = 37.4 bits (85), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 40/81 (49%), Gaps = 5/81 (6%)
Query: 963 DPKASEDIEEPTKGFIELKNVFFSYP--SRPDQMIFKGLTLKIEAGKTVALVGQSGSGKS 1020
+P E ++ K +++ N+ F YP S+P + + +A++G +G+GKS
Sbjct: 657 EPGYLEGVKTKQKAIVKVTNMEFQYPGTSKPQ---ITDINFQCSLSSRIAVIGPNGAGKS 713
Query: 1021 TIIGLIERFYDPQSGSVMVDE 1041
T+I ++ P SG V E
Sbjct: 714 TLINVLTGELLPTSGEVYTHE 734
>pdb|3UX8|A Chain A, Crystal Structure Of Uvra
Length = 670
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 59/122 (48%), Gaps = 11/122 (9%)
Query: 442 GYETKVGQFGVQLSGGQKQRIAIARALIRDPK---ILLLDEATSALDAES-ERIVQEALD 497
GY K+GQ LSGG+ QR+ +A L R + +LDE T+ L + R++
Sbjct: 533 GY-MKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHR 591
Query: 498 QASQGRTMIIIAHRLSTIRKADLI------GVLQSGRVIESGSHDVLMQMNNGEGGAYSK 551
G T+++I H L I+ AD I G + G+++ G+ + + ++ G Y K
Sbjct: 592 LVDNGDTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVAVGTPEEVAEVKESHTGRYLK 651
Query: 552 MV 553
+
Sbjct: 652 PI 653
Score = 38.5 bits (88), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 49/97 (50%), Gaps = 10/97 (10%)
Query: 1111 GERGVQLSGGQKQRIALARAVLKNP---MILLLDEATSALDSASENLVQEALEKMM-VGR 1166
G+ LSGG+ QR+ LA + + + +LDE T+ L + + L +++ G
Sbjct: 538 GQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGD 597
Query: 1167 TCVVVAHRLSTIQKADNIVVI------KNGKVVEQGT 1197
T +V+ H L I+ AD I+ + + G++V GT
Sbjct: 598 TVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVAVGT 634
Score = 36.6 bits (83), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 55/118 (46%), Gaps = 14/118 (11%)
Query: 1117 LSGGQKQRIALARAVLKN--PMILLLDEATSALDSASENLVQEALEKMM-VGRTCVVVAH 1173
LSGG+ QRI LA + ++ +LDE + L + + L+ M +G T +VV H
Sbjct: 203 LSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEH 262
Query: 1174 RLSTIQKADNIVV------IKNGKVVEQGTQSSLLSMGNG--GAYYS---LIKMQASR 1220
T+ AD ++ I G+VV GT +++ N G Y S I + A R
Sbjct: 263 DEDTMLAADYLIDIGPGAGIHGGEVVAAGTPEEVMNDPNSLTGQYLSGKKFIPIPAER 320
Score = 30.0 bits (66), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 20/28 (71%)
Query: 996 FKGLTLKIEAGKTVALVGQSGSGKSTII 1023
K +++KI G VA+ G SGSGKST++
Sbjct: 338 LKNVSVKIPLGTFVAVTGVSGSGKSTLV 365
>pdb|3ZQJ|A Chain A, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|B Chain B, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|C Chain C, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|D Chain D, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|E Chain E, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|F Chain F, Mycobacterium Tuberculosis Uvra
Length = 993
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 52/99 (52%), Gaps = 8/99 (8%)
Query: 430 ANVHDFIMKLND---GYETKVGQFGVQLSGGQKQRIAIARALIRDPK---ILLLDEATSA 483
A VH ++ L D GY ++GQ LSGG+ QR+ +A L + + +LDE T+
Sbjct: 838 AGVHRYLRTLVDVGLGY-VRLGQPAPTLSGGEAQRVKLASELQKRSTGRTVYILDEPTTG 896
Query: 484 LDAESERIVQEALDQ-ASQGRTMIIIAHRLSTIRKADLI 521
L + R + ++ +G T+I+I H L I+ +D I
Sbjct: 897 LHFDDIRKLLNVINGLVDKGNTVIVIEHNLDVIKTSDWI 935
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 58/121 (47%), Gaps = 10/121 (8%)
Query: 454 LSGGQKQRIAIARALIRD--PKILLLDEATSALDAESERIVQEALDQASQ-GRTMIIIAH 510
LSGG+ QRI +A + + +LDE + L R + E L + G T+I++ H
Sbjct: 522 LSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTLIVVEH 581
Query: 511 RLSTIRKADLIGVL------QSGRVIESGSHDVLMQMNNGEGGAY-SKMVQLQQSAMRNE 563
TI AD I + GR++ SG +D L++ + GAY S ++ A+R
Sbjct: 582 DEDTIEHADWIVDIGPGAGEHGGRIVHSGPYDELLRNKDSITGAYLSGRESIEIPAIRRS 641
Query: 564 V 564
V
Sbjct: 642 V 642
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 51/107 (47%), Gaps = 11/107 (10%)
Query: 1117 LSGGQKQRIALARAVLKN--PMILLLDEATSALDSASENLVQEALEKMM-VGRTCVVVAH 1173
LSGG+ QRI LA + ++ +LDE + L + E L ++ +G T +VV H
Sbjct: 522 LSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTLIVVEH 581
Query: 1174 RLSTIQKADNIVVI------KNGKVVEQGTQSSLLSMGNG--GAYYS 1212
TI+ AD IV I G++V G LL + GAY S
Sbjct: 582 DEDTIEHADWIVDIGPGAGEHGGRIVHSGPYDELLRNKDSITGAYLS 628
Score = 38.1 bits (87), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 61/129 (47%), Gaps = 20/129 (15%)
Query: 1092 LANAHEFISSTED---GYDTYCGERGVQLSGGQKQRIALARAVLKNP---MILLLDEATS 1145
+A H ++ + D GY G+ LSGG+ QR+ LA + K + +LDE T+
Sbjct: 837 IAGVHRYLRTLVDVGLGY-VRLGQPAPTLSGGEAQRVKLASELQKRSTGRTVYILDEPTT 895
Query: 1146 AL--DSASE--NLVQEALEKMMVGRTCVVVAHRLSTIQKADNIVVIKNGK------VVEQ 1195
L D + N++ ++K G T +V+ H L I+ +D I+ + VV Q
Sbjct: 896 GLHFDDIRKLLNVINGLVDK---GNTVIVIEHNLDVIKTSDWIIDLGPEGGAGGGTVVAQ 952
Query: 1196 GTQSSLLSM 1204
GT + ++
Sbjct: 953 GTPEDVAAV 961
>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
pdb|3OZX|B Chain B, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
Length = 538
Score = 43.9 bits (102), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 57/234 (24%), Positives = 110/234 (47%), Gaps = 43/234 (18%)
Query: 335 FSYPTRPDTPTIGLVGSSGSGKSTVISLL-----ERFYDPVKGNILLDGHKIKKLQ-LKW 388
F PT + +G++G +G GK+TV+ +L F DP K+ K + LK
Sbjct: 17 FGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDP--------NSKVGKDEVLKR 68
Query: 389 LRSQMGLVNQEPILFSTSIKENILIGKPGASMETVVKAAQ--AANVHDFIMKLND-GYET 445
R + + N L+S +K ++ K ++ V A++ V++ + K+++ G +
Sbjct: 69 FRGKE-IYNYFKELYSNELK---IVHK----IQYVEYASKFLKGTVNEILTKIDERGKKD 120
Query: 446 KVGQF----------GVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEA 495
+V + LSGG QR+ +A +L+R+ + + D+ +S LD + +A
Sbjct: 121 EVKELLNMTNLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKA 180
Query: 496 LDQASQGRTMIIIAHRLSTIRK-ADLIGVLQS-----GRVIESGSHDVLMQMNN 543
+ + + + +I++ H L + DLI ++ GRV S S+ + +NN
Sbjct: 181 IRELLKNKYVIVVDHDLIVLDYLTDLIHIIYGESSVYGRV--SKSYAARVGINN 232
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
Query: 453 QLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQASQGRTMI--IIAH 510
LSGG+ Q++ IA L ++ + +LD+ +S LD E IV +A+ + ++ R + II H
Sbjct: 385 DLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDH 444
Query: 511 RLS 513
LS
Sbjct: 445 DLS 447
Score = 40.8 bits (94), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 92/208 (44%), Gaps = 29/208 (13%)
Query: 1006 GKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIALVSQEPTL 1065
G+ + ++G +G GK+T ++ GSV E+ I SY +++
Sbjct: 294 GEIIGILGPNGIGKTTFARILVGEITADEGSV-TPEKQILSYKPQRIFPN---------- 342
Query: 1066 FAGTIRQNIVYGKEVATEAE---IRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQK 1122
+ GT++Q + + A + N H + S + LSGG+
Sbjct: 343 YDGTVQQYLENASKDALSTSSWFFEEVTKRLNLHRLLESNVN-----------DLSGGEL 391
Query: 1123 QRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMVGRTCV--VVAHRLSTIQK 1180
Q++ +A + K + +LD+ +S LD +V +A++++ R V ++ H LS
Sbjct: 392 QKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDY 451
Query: 1181 -ADNIVVIKNGKVVEQGTQSSLLSMGNG 1207
AD I+V K G+ + G +S +++ G
Sbjct: 452 IADRIIVFK-GEPEKAGLATSPVTLKTG 478
Score = 39.3 bits (90), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 43/201 (21%), Positives = 87/201 (43%), Gaps = 33/201 (16%)
Query: 1009 VALVGQSGSGKSTIIGL-----IERFYDPQSGSVMVDE-------RNIKSY------NLR 1050
+ ++G++G GK+T++ + I F DP S V DE + I +Y N
Sbjct: 28 LGVLGKNGVGKTTVLKILAGEIIPNFGDPNS-KVGKDEVLKRFRGKEIYNYFKELYSNEL 86
Query: 1051 KLRSCIALVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYC 1110
K+ I V GT+ + + E + E+++ + N ++
Sbjct: 87 KIVHKIQYVEYASKFLKGTVNEILTKIDERGKKDEVKELLNMTNLWNKDANI-------- 138
Query: 1111 GERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMVGRTCVV 1170
LSGG QR+ +A ++L+ + + D+ +S LD + +A+ +++ + +V
Sbjct: 139 ------LSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIV 192
Query: 1171 VAHRLSTIQKADNIVVIKNGK 1191
V H L + +++ I G+
Sbjct: 193 VDHDLIVLDYLTDLIHIIYGE 213
>pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp-
Binding Protein (cbio-2), St1066
Length = 263
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 48/211 (22%), Positives = 95/211 (45%), Gaps = 30/211 (14%)
Query: 977 FIELKNVFFSYPSRP-DQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSG 1035
I+LKNV + + ++ + + L++ G+ V ++G +GSGK+T++ I P SG
Sbjct: 1 MIQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSG 58
Query: 1036 SVMVDERNIKSYNLRKLRSCIALVSQEPTLFA-GTIRQNIVY------GKEVATEAEIRK 1088
++ ++ +RK+R+ I + P + G +IVY G + E+ K
Sbjct: 59 NIFIN-----GMEVRKIRNYIRYSTNLPEAYEIGVTVNDIVYLYEELKGLDRDLFLEMLK 113
Query: 1089 AAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALD 1148
A L + + +LS GQ + + A+ P I+ LDE +D
Sbjct: 114 ALKLG-------------EEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVD 160
Query: 1149 SASENLVQEALEKMMVGRTCVVVAHRLSTIQ 1179
+A +++ +++ G+ ++V H L +
Sbjct: 161 AARRHVISRYIKEY--GKEGILVTHELDMLN 189
Score = 39.3 bits (90), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 39/173 (22%), Positives = 81/173 (46%), Gaps = 24/173 (13%)
Query: 348 LVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFSTSI 407
++G +GSGK+T++ + P GNI ++G +++K++ ++R +ST++
Sbjct: 35 ILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKIR-NYIR------------YSTNL 80
Query: 408 KENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGV-----QLSGGQKQRI 462
E IG + + + + + F+ L K+G+ + +LS GQ +
Sbjct: 81 PEAYEIGVTVNDIVYLYEELKGLDRDLFLEMLK---ALKLGEEILRRKLYKLSAGQSVLV 137
Query: 463 AIARALIRDPKILLLDEATSALDAESERIVQEALDQASQGRTMIIIAHRLSTI 515
+ AL P+I+ LDE +DA ++ + + G+ I++ H L +
Sbjct: 138 RTSLALASQPEIVGLDEPFENVDAARRHVISRYIKE--YGKEGILVTHELDML 188
>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their
Ribosomal Binding Partners
Length = 608
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 53/214 (24%), Positives = 98/214 (45%), Gaps = 35/214 (16%)
Query: 985 FSYPS-RPDQMIFKGLTLKIEAGK-----TVALVGQSGSGKSTIIGLIERFYDPQSGSVM 1038
FSYPS + Q F L +E G+ + ++G++G+GK+T+I L+ +G++
Sbjct: 354 FSYPSLKKTQGDF---VLNVEEGEFSDSEILVMMGENGTGKTTLIKLL-------AGALK 403
Query: 1039 VDE-RNIKSYNLRKLRSCIALVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVLANAHE 1097
DE ++I N+ IA F GT+RQ ++ K++ + L +
Sbjct: 404 PDEGQDIPKLNVSMKPQKIA------PKFPGTVRQ--LFFKKI-------RGQFLNPQFQ 448
Query: 1098 FISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQE 1157
D + LSGG+ QR+A+ A+ I L+DE ++ LDS + +
Sbjct: 449 TDVVKPLRIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSK 508
Query: 1158 ALEKMMV--GRTCVVVAHR-LSTIQKADNIVVIK 1188
+ + ++ +T +V H + AD ++V +
Sbjct: 509 VIRRFILHNKKTAFIVEHDFIMATYLADKVIVFE 542
Score = 40.8 bits (94), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 79/177 (44%), Gaps = 35/177 (19%)
Query: 342 DTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQM-----GLV 396
D+ + ++G +G+GK+T+I LL P +G I KL + ++ G V
Sbjct: 377 DSEILVMMGENGTGKTTLIKLLAGALKPD------EGQDIPKLNVSMKPQKIAPKFPGTV 430
Query: 397 NQEPILFSTSIKENILIGKPGASMET-VVKAAQAANVHDFIMKLNDGYETKVGQFGVQLS 455
Q LF I+ L +T VVK ++++D + +V LS
Sbjct: 431 RQ---LFFKKIRGQFL----NPQFQTDVVKP----------LRIDDIIDQEVQH----LS 469
Query: 456 GGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQ--ASQGRTMIIIAH 510
GG+ QR+AI AL I L+DE ++ LD+E I + + + +T I+ H
Sbjct: 470 GGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEH 526
Score = 38.1 bits (87), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 46/197 (23%), Positives = 89/197 (45%), Gaps = 29/197 (14%)
Query: 338 PTRPDTPTIGLVGSSGSGKSTVISLLE--------RFYDPVKGNILLDGHKIKKLQLKWL 389
PT +GLVG++G GKST + +L RF DP + ++ + +LQ +
Sbjct: 98 PTPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFT 157
Query: 390 RSQMGLVNQEPILFSTSIKENI--LIGKPGASMETVVKAAQAANVHDF-----IMKLNDG 442
+ L + + +NI I P + ++K + D I++L +
Sbjct: 158 KM---LEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENV 214
Query: 443 YETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAE----SERIVQEALDQ 498
+ + +LSGG+ QR AI + +++ + + DE +S LD + + +I++ L
Sbjct: 215 LKRDIE----KLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLL-- 268
Query: 499 ASQGRTMIIIAHRLSTI 515
+ + +I + H LS +
Sbjct: 269 -APTKYVICVEHDLSVL 284
Score = 32.3 bits (72), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
Query: 1116 QLSGGQKQRIALARAVLKNPMILLLDEATSALDSASE-NLVQEALEKMMVGRTCVVVAHR 1174
+LSGG+ QR A+ + ++ + + DE +S LD N Q + + + V H
Sbjct: 221 KLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHD 280
Query: 1175 LSTIQKADNIVVIKNG 1190
LS + + V I G
Sbjct: 281 LSVLDYLSDFVCIIYG 296
>pdb|2JR0|A Chain A, Solution Structure Of Nusb From Aquifex Aeolicus
pdb|3R2C|A Chain A, Crystal Structure Of Antitermination Factors Nusb And Nuse
In Complex With Boxa Rna
pdb|3R2C|B Chain B, Crystal Structure Of Antitermination Factors Nusb And Nuse
In Complex With Boxa Rna
pdb|4EYA|A Chain A, Crystal Structure Of A Plectonemic Rna Supercoil
pdb|4EYA|B Chain B, Crystal Structure Of A Plectonemic Rna Supercoil
pdb|4EYA|C Chain C, Crystal Structure Of A Plectonemic Rna Supercoil
pdb|4EYA|D Chain D, Crystal Structure Of A Plectonemic Rna Supercoil
pdb|4EYA|E Chain E, Crystal Structure Of A Plectonemic Rna Supercoil
pdb|4EYA|F Chain F, Crystal Structure Of A Plectonemic Rna Supercoil
pdb|4EYA|G Chain G, Crystal Structure Of A Plectonemic Rna Supercoil
pdb|4EYA|H Chain H, Crystal Structure Of A Plectonemic Rna Supercoil
Length = 148
Score = 35.0 bits (79), Expect = 0.24, Method: Composition-based stats.
Identities = 18/67 (26%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Query: 165 PGIVFGKVLKDLGAQGKDAYEAAGGIAEQAISSIRTVYSFVGEH---QTLKRFSLALRKN 221
PG +F +V+++ + KDAYE A + + A+ I + S + +H ++ R R
Sbjct: 25 PGELFKEVVEEKNIKNKDAYEYAKKLVDTAVRHIEEIDSIIEKHLKGWSIDRLGYVERNA 84
Query: 222 MELGIKQ 228
+ LG+ +
Sbjct: 85 LRLGVAE 91
>pdb|3R2D|A Chain A, Crystal Structure Of Antitermination Factors Nusb And Nuse
In Complex With Dsrna
pdb|3R2D|B Chain B, Crystal Structure Of Antitermination Factors Nusb And Nuse
In Complex With Dsrna
Length = 149
Score = 35.0 bits (79), Expect = 0.25, Method: Composition-based stats.
Identities = 18/67 (26%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Query: 165 PGIVFGKVLKDLGAQGKDAYEAAGGIAEQAISSIRTVYSFVGEH---QTLKRFSLALRKN 221
PG +F +V+++ + KDAYE A + + A+ I + S + +H ++ R R
Sbjct: 26 PGELFKEVVEEKNIKNKDAYEYAKKLVDTAVRHIEEIDSIIEKHLKGWSIDRLGYVERNA 85
Query: 222 MELGIKQ 228
+ LG+ +
Sbjct: 86 LRLGVAE 92
>pdb|3ZGX|A Chain A, Crystal Structure Of The Kleisin-n Smc Interface In
Prokaryotic Condensin
pdb|3ZGX|B Chain B, Crystal Structure Of The Kleisin-n Smc Interface In
Prokaryotic Condensin
Length = 426
Score = 34.7 bits (78), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 40/70 (57%), Gaps = 4/70 (5%)
Query: 1117 LSGGQK--QRIALARAVLK-NPM-ILLLDEATSALDSASENLVQEALEKMMVGRTCVVVA 1172
LSGG++ IAL ++LK P+ +LDE +ALD A+ + L+K +V+
Sbjct: 329 LSGGERALTAIALLFSILKVRPVPFCVLDEVEAALDEANVFRFAQYLKKYSSDTQFIVIT 388
Query: 1173 HRLSTIQKAD 1182
HR T+++AD
Sbjct: 389 HRKGTMEEAD 398
Score = 34.3 bits (77), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 4/72 (5%)
Query: 454 LSGGQKQRIAIARAL----IRDPKILLLDEATSALDAESERIVQEALDQASQGRTMIIIA 509
LSGG++ AIA +R +LDE +ALD + + L + S I+I
Sbjct: 329 LSGGERALTAIALLFSILKVRPVPFCVLDEVEAALDEANVFRFAQYLKKYSSDTQFIVIT 388
Query: 510 HRLSTIRKADLI 521
HR T+ +AD++
Sbjct: 389 HRKGTMEEADVL 400
>pdb|2OAP|1 Chain 1, Crystal Structure Of The Archaeal Secretion Atpase Gspe In
Complex With Amp-Pnp
pdb|2OAP|2 Chain 2, Crystal Structure Of The Archaeal Secretion Atpase Gspe In
Complex With Amp-Pnp
pdb|2OAQ|1 Chain 1, Crystal Structure Of The Archaeal Secretion Atpase Gspe In
Complex With Phosphate
pdb|2OAQ|2 Chain 2, Crystal Structure Of The Archaeal Secretion Atpase Gspe In
Complex With Phosphate
Length = 511
Score = 33.1 bits (74), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 10/71 (14%)
Query: 988 PSRPDQMIFKG---------LTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVM 1038
P P +I KG L L IE + +VG++ SGK+T + I F P + V
Sbjct: 233 PLTPIDLIEKGTVPSGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIXXFIPPDAKVVS 292
Query: 1039 V-DERNIKSYN 1048
+ D R IK Y+
Sbjct: 293 IEDTREIKLYH 303
>pdb|1E69|A Chain A, Smc Head Domain From Thermotoga Maritima
pdb|1E69|B Chain B, Smc Head Domain From Thermotoga Maritima
pdb|1E69|C Chain C, Smc Head Domain From Thermotoga Maritima
pdb|1E69|D Chain D, Smc Head Domain From Thermotoga Maritima
pdb|1E69|E Chain E, Smc Head Domain From Thermotoga Maritima
pdb|1E69|F Chain F, Smc Head Domain From Thermotoga Maritima
Length = 322
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 42/93 (45%), Gaps = 10/93 (10%)
Query: 439 LNDGYETKVGQFGVQ------LSGGQKQRIAIARAL----IRDPKILLLDEATSALDAES 488
L+ G+E + + G + LSGG+K + +A I+ +LDE S LD +
Sbjct: 199 LDAGFEISIRKPGRRDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYN 258
Query: 489 ERIVQEALDQASQGRTMIIIAHRLSTIRKADLI 521
+ L + S+ I+I H + ADL+
Sbjct: 259 AERFKRLLKENSKHTQFIVITHNKIVMEAADLL 291
>pdb|3AUX|A Chain A, Crystal Structure Of Rad50 Bound To Adp
pdb|3AUY|A Chain A, Crystal Structure Of Rad50 Bound To Adp
pdb|3AUY|B Chain B, Crystal Structure Of Rad50 Bound To Adp
pdb|3AV0|B Chain B, Crystal Structure Of Mre11-Rad50 Bound To Atp S
Length = 371
Score = 31.6 bits (70), Expect = 2.6, Method: Composition-based stats.
Identities = 29/84 (34%), Positives = 40/84 (47%), Gaps = 8/84 (9%)
Query: 454 LSGGQK------QRIAIARALIRDP-KILLLDEATSALDAESERIVQEALDQASQGRTMI 506
LSGG++ R+AIA ALI + + ++LDE T LD + E + MI
Sbjct: 281 LSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMI 340
Query: 507 IIAHRLSTIRKAD-LIGVLQSGRV 529
II H AD +I V + G V
Sbjct: 341 IITHHRELEDVADVIINVKKDGNV 364
>pdb|3QQI|A Chain A, Crystal Structure Of The Ha1 Receptor Binding Domain Of H2
Hemagglutinin
pdb|3QQI|B Chain B, Crystal Structure Of The Ha1 Receptor Binding Domain Of H2
Hemagglutinin
Length = 219
Score = 30.4 bits (67), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 32/148 (21%), Positives = 60/148 (40%), Gaps = 13/148 (8%)
Query: 462 IAIARALIRDP---KILLLDEATSALDAESERIVQEALDQASQGRTMIIIAHRLSTIRKA 518
+IA L+ +P ++L + E + ++ E+ R + L + H LS+++
Sbjct: 10 CSIAGWLLGNPECDRLLSVPEWSYIMEKENPR---DGLCYPGSFNDYEELKHLLSSVKHF 66
Query: 519 DLIGVLQSGRVIE----SGSHDVLMQMNNGEGGAYSKMVQLQQSAMRNEVASGSYNPTKS 574
+ + +L R + GS + +G + MV L + VA GSYN T
Sbjct: 67 EKVKILPKDRWTQHTTTGGSRACAV---SGNPSFFRNMVWLTEKGSNYPVAKGSYNNTSG 123
Query: 575 KSHHSLMSAQTPHTPINEGSSYQNSPIY 602
+ + P+ + + YQN Y
Sbjct: 124 EQMLIIWGVHHPNDETEQRTLYQNVGTY 151
>pdb|2WR7|A Chain A, The Structure Of Influenza H2 Human Singapore
Hemagglutinin With Human Receptor
pdb|2WR7|B Chain B, The Structure Of Influenza H2 Human Singapore
Hemagglutinin With Human Receptor
pdb|2WR7|C Chain C, The Structure Of Influenza H2 Human Singapore
Hemagglutinin With Human Receptor
pdb|2WRB|A Chain A, The Structure Of Influenza H2 Human Singapore
Hemagglutinin With Avian Receptor
pdb|2WRB|B Chain B, The Structure Of Influenza H2 Human Singapore
Hemagglutinin With Avian Receptor
pdb|2WRB|C Chain C, The Structure Of Influenza H2 Human Singapore
Hemagglutinin With Avian Receptor
pdb|2WRC|A Chain A, The Structure Of Influenza H2 Human Singapore
Hemagglutinin
pdb|2WRC|B Chain B, The Structure Of Influenza H2 Human Singapore
Hemagglutinin
pdb|2WRC|C Chain C, The Structure Of Influenza H2 Human Singapore
Hemagglutinin
Length = 506
Score = 30.0 bits (66), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 32/148 (21%), Positives = 59/148 (39%), Gaps = 13/148 (8%)
Query: 462 IAIARALIRDP---KILLLDEATSALDAESERIVQEALDQASQGRTMIIIAHRLSTIRKA 518
+IA L+ +P ++L + E + ++ E+ R + L + H LS+++
Sbjct: 70 CSIAGWLLGNPECDRLLSVPEWSYIMEKENPR---DGLCYPGSFNDYEELKHLLSSVKHF 126
Query: 519 DLIGVLQSGRVIE----SGSHDVLMQMNNGEGGAYSKMVQLQQSAMRNEVASGSYNPTKS 574
+ + +L R + GS + G + MV L + VA GSYN T
Sbjct: 127 EKVKILPKDRWTQHTTTGGSRACAVS---GNPSFFRNMVWLTEKGSNYPVAKGSYNNTSG 183
Query: 575 KSHHSLMSAQTPHTPINEGSSYQNSPIY 602
+ + P+ + + YQN Y
Sbjct: 184 EQMLIIWGVHHPNDETEQRTLYQNVGTY 211
>pdb|3CYV|A Chain A, Crystal Structure Of Uroporphyrinogen Decarboxylase From
Shigella Flexineri: New Insights Into Its Catalytic
Mechanism
Length = 354
Score = 30.0 bits (66), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 48/111 (43%), Gaps = 20/111 (18%)
Query: 305 IDRVPVINSEDEIGKTLAYLRGEIEFKDVDFSYPTRPDTPTIGLVGSS----------GS 354
+D++P+ + EDE+G + +R + + + P IG GS GS
Sbjct: 109 VDKLPIPDPEDELGYVMNAVR--------TIRHELKGEVPLIGFSGSPWTLATYMVEGGS 160
Query: 355 GKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFST 405
K+ + + DP + LLD K+ K +L +Q+ Q ++F T
Sbjct: 161 SKAFTVIKKMMYADPQALHALLD--KLAKSVTLYLNAQIKAGAQAVMIFDT 209
>pdb|3KU6|A Chain A, Crystal Structure Of A H2n2 Influenza Virus Hemagglutinin,
226l228G
Length = 327
Score = 30.0 bits (66), Expect = 8.5, Method: Composition-based stats.
Identities = 23/99 (23%), Positives = 39/99 (39%), Gaps = 7/99 (7%)
Query: 508 IAHRLSTIRKADLIGVLQSGR----VIESGSHDVLMQMNNGEGGAYSKMVQLQQSAMRNE 563
+ H LS+++ + + +L R GS + +G + MV L +
Sbjct: 103 LKHLLSSVKHFEKVKILPKDRWTQHTTTGGSRACAV---SGNPSFFRNMVWLTEKGSNYP 159
Query: 564 VASGSYNPTKSKSHHSLMSAQTPHTPINEGSSYQNSPIY 602
VA GSYN T + + P+ + + YQN Y
Sbjct: 160 VAKGSYNNTSGEQMLIIWGVHHPNDETEQRTLYQNVGTY 198
>pdb|3KU5|A Chain A, Crystal Structure Of A H2n2 Influenza Virus Hemagglutinin,
Human Like
Length = 327
Score = 30.0 bits (66), Expect = 8.5, Method: Composition-based stats.
Identities = 23/99 (23%), Positives = 39/99 (39%), Gaps = 7/99 (7%)
Query: 508 IAHRLSTIRKADLIGVLQSGR----VIESGSHDVLMQMNNGEGGAYSKMVQLQQSAMRNE 563
+ H LS+++ + + +L R GS + +G + MV L +
Sbjct: 103 LKHLLSSVKHFEKVKILPKDRWTQHTTTGGSRACAV---SGNPSFFRNMVWLTEKGSNYP 159
Query: 564 VASGSYNPTKSKSHHSLMSAQTPHTPINEGSSYQNSPIY 602
VA GSYN T + + P+ + + YQN Y
Sbjct: 160 VAKGSYNNTSGEQMLIIWGVHHPNDETEQRTLYQNVGTY 198
>pdb|3KU3|A Chain A, Crystal Structure Of A H2n2 Influenza Virus Hemagglutinin,
Avian Like
pdb|3QQB|A Chain A, Crystal Structure Of Ha2 R106h Mutant Of H2 Hemagglutinin,
Neutral Ph Form
pdb|3QQE|A Chain A, Crystal Structure Of Ha2 R106h Mutant Of H2 Hemagglutinin,
Re- Neutralized Form
pdb|3QQO|A Chain A, Crystal Structure Of Ha2 R106h Mutant Of H2 Hemagglutinin,
Acidic Ph Form
pdb|3QQO|C Chain C, Crystal Structure Of Ha2 R106h Mutant Of H2 Hemagglutinin,
Acidic Ph Form
pdb|3QQO|E Chain E, Crystal Structure Of Ha2 R106h Mutant Of H2 Hemagglutinin,
Acidic Ph Form
pdb|4HF5|A Chain A, Crystal Structure Of Fab 8f8 In Complex A H2n2 Influenza
Virus Hemagglutinin
Length = 327
Score = 30.0 bits (66), Expect = 8.5, Method: Composition-based stats.
Identities = 23/99 (23%), Positives = 39/99 (39%), Gaps = 7/99 (7%)
Query: 508 IAHRLSTIRKADLIGVLQSGR----VIESGSHDVLMQMNNGEGGAYSKMVQLQQSAMRNE 563
+ H LS+++ + + +L R GS + +G + MV L +
Sbjct: 103 LKHLLSSVKHFEKVKILPKDRWTQHTTTGGSRACAV---SGNPSFFRNMVWLTEKGSNYP 159
Query: 564 VASGSYNPTKSKSHHSLMSAQTPHTPINEGSSYQNSPIY 602
VA GSYN T + + P+ + + YQN Y
Sbjct: 160 VAKGSYNNTSGEQMLIIWGVHHPNDETEQRTLYQNVGTY 198
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.133 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,411,350
Number of Sequences: 62578
Number of extensions: 1195932
Number of successful extensions: 3983
Number of sequences better than 100.0: 121
Number of HSP's better than 100.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 3392
Number of HSP's gapped (non-prelim): 330
length of query: 1224
length of database: 14,973,337
effective HSP length: 110
effective length of query: 1114
effective length of database: 8,089,757
effective search space: 9011989298
effective search space used: 9011989298
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)