Query 047171
Match_columns 1224
No_of_seqs 740 out of 5606
Neff 8.3
Searched_HMMs 29240
Date Mon Mar 25 14:36:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047171.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047171hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f4c_A Multidrug resistance pr 100.0 9E-192 3E-196 1903.2 129.1 1204 3-1220 61-1319(1321)
2 3g5u_A MCG1178, multidrug resi 100.0 2E-168 8E-173 1673.3 116.5 1192 3-1221 34-1274(1284)
3 4f4c_A Multidrug resistance pr 100.0 1.3E-92 4.6E-97 946.7 72.6 579 634-1218 57-654 (1321)
4 3qf4_A ABC transporter, ATP-bi 100.0 4.8E-85 1.6E-89 809.2 69.6 569 641-1220 13-581 (587)
5 3qf4_B Uncharacterized ABC tra 100.0 1.1E-84 3.7E-89 808.7 65.1 571 636-1219 22-592 (598)
6 4a82_A Cystic fibrosis transme 100.0 2E-84 6.8E-89 803.9 65.9 572 639-1218 2-577 (578)
7 3qf4_A ABC transporter, ATP-bi 100.0 2E-83 7E-88 794.6 70.8 544 4-557 11-579 (587)
8 3b5x_A Lipid A export ATP-bind 100.0 2.7E-82 9.1E-87 786.3 76.8 568 638-1218 12-580 (582)
9 2yl4_A ATP-binding cassette SU 100.0 1.9E-82 6.5E-87 789.7 74.2 576 638-1219 6-585 (595)
10 3g5u_A MCG1178, multidrug resi 100.0 2.9E-84 9.8E-89 864.3 60.0 577 636-1218 32-626 (1284)
11 4a82_A Cystic fibrosis transme 100.0 3.4E-83 1.2E-87 792.9 65.2 543 4-556 2-576 (578)
12 3qf4_B Uncharacterized ABC tra 100.0 3.1E-83 1.1E-87 795.5 63.6 545 3-558 24-592 (598)
13 3b60_A Lipid A export ATP-bind 100.0 4.4E-82 1.5E-86 784.4 71.9 569 637-1218 11-580 (582)
14 3b5x_A Lipid A export ATP-bind 100.0 9.5E-81 3.2E-85 772.4 73.6 543 3-557 12-580 (582)
15 3b60_A Lipid A export ATP-bind 100.0 1.3E-80 4.5E-85 771.1 71.2 543 2-556 11-579 (582)
16 2yl4_A ATP-binding cassette SU 100.0 3.1E-80 1.1E-84 769.8 70.2 547 3-558 6-585 (595)
17 3nh6_A ATP-binding cassette SU 100.0 3.3E-64 1.1E-68 566.7 27.7 278 935-1219 14-291 (306)
18 3bk7_A ABC transporter ATP-bin 100.0 4.2E-63 1.4E-67 608.9 34.0 199 977-1203 357-563 (607)
19 1yqt_A RNAse L inhibitor; ATP- 100.0 3.3E-63 1.1E-67 604.8 30.5 199 977-1203 287-493 (538)
20 2iw3_A Elongation factor 3A; a 100.0 6.6E-62 2.2E-66 614.0 38.0 186 327-540 435-635 (986)
21 3ozx_A RNAse L inhibitor; ATP 100.0 5.8E-63 2E-67 600.3 26.8 199 977-1202 269-476 (538)
22 3ux8_A Excinuclease ABC, A sub 100.0 5.1E-61 1.7E-65 605.9 32.8 202 330-540 34-298 (670)
23 3j16_B RLI1P; ribosome recycli 100.0 3E-60 1E-64 582.0 31.8 198 981-1204 350-560 (608)
24 3nh6_A ATP-binding cassette SU 100.0 4.7E-59 1.6E-63 524.8 26.7 267 287-558 14-291 (306)
25 2ff7_A Alpha-hemolysin translo 100.0 1E-53 3.6E-58 470.4 31.8 240 976-1217 6-245 (247)
26 2ghi_A Transport protein; mult 100.0 9.7E-53 3.3E-57 466.3 29.4 241 976-1219 16-256 (260)
27 2ixe_A Antigen peptide transpo 100.0 3.3E-52 1.1E-56 464.5 28.3 242 975-1218 14-258 (271)
28 1mv5_A LMRA, multidrug resista 100.0 7.6E-53 2.6E-57 463.5 20.4 237 978-1218 2-239 (243)
29 3pih_A Uvrabc system protein A 100.0 1.2E-50 4.2E-55 512.5 31.6 216 977-1212 589-909 (916)
30 3gd7_A Fusion complex of cysti 100.0 1.3E-50 4.5E-55 470.0 27.5 237 972-1212 14-250 (390)
31 2ff7_A Alpha-hemolysin translo 100.0 2E-48 6.9E-53 428.2 30.2 228 326-556 6-245 (247)
32 2cbz_A Multidrug resistance-as 100.0 6.2E-49 2.1E-53 429.9 25.2 226 977-1219 3-231 (237)
33 2pze_A Cystic fibrosis transme 100.0 2E-48 7E-53 423.9 26.5 222 976-1214 5-227 (229)
34 2vf7_A UVRA2, excinuclease ABC 100.0 3.6E-48 1.2E-52 486.2 28.9 179 351-540 270-475 (842)
35 2ghi_A Transport protein; mult 100.0 2.4E-47 8.2E-52 423.0 29.0 227 326-557 16-255 (260)
36 2ixe_A Antigen peptide transpo 100.0 3E-47 1E-51 424.4 27.7 228 325-556 14-257 (271)
37 2r6f_A Excinuclease ABC subuni 100.0 4.1E-47 1.4E-51 474.6 30.6 209 977-1204 629-943 (972)
38 1mv5_A LMRA, multidrug resista 100.0 9.5E-48 3.2E-52 422.9 18.4 223 328-554 2-236 (243)
39 3tui_C Methionine import ATP-b 100.0 1.1E-46 3.8E-51 430.2 25.5 225 976-1212 23-261 (366)
40 3gfo_A Cobalt import ATP-bindi 100.0 1.1E-46 3.9E-51 419.0 23.9 215 977-1204 7-234 (275)
41 1ji0_A ABC transporter; ATP bi 100.0 2.4E-46 8.1E-51 410.6 25.5 219 977-1204 6-229 (240)
42 2ygr_A Uvrabc system protein A 100.0 2.7E-45 9.1E-50 460.3 37.6 209 977-1204 647-961 (993)
43 3tif_A Uncharacterized ABC tra 100.0 1.4E-46 4.7E-51 410.8 21.8 214 978-1202 2-233 (235)
44 4g1u_C Hemin import ATP-bindin 100.0 1.2E-45 4E-50 410.1 23.3 213 977-1203 11-237 (266)
45 2olj_A Amino acid ABC transpor 100.0 2.5E-45 8.6E-50 405.9 25.8 214 977-1204 24-249 (263)
46 3fvq_A Fe(3+) IONS import ATP- 100.0 1.6E-45 5.5E-50 420.8 24.4 222 977-1213 4-237 (359)
47 1vpl_A ABC transporter, ATP-bi 100.0 4E-45 1.4E-49 403.1 24.6 213 976-1203 14-235 (256)
48 2bbs_A Cystic fibrosis transme 100.0 3.1E-45 1.1E-49 410.6 23.2 216 976-1213 39-255 (290)
49 1b0u_A Histidine permease; ABC 100.0 2.9E-45 1E-49 406.7 21.9 215 977-1204 6-243 (262)
50 3rlf_A Maltose/maltodextrin im 100.0 5.3E-45 1.8E-49 419.2 23.6 219 977-1212 3-231 (381)
51 3gd7_A Fusion complex of cysti 100.0 8.4E-45 2.9E-49 421.4 25.3 216 325-542 17-244 (390)
52 1g6h_A High-affinity branched- 100.0 7.7E-45 2.6E-49 402.8 23.6 214 977-1200 7-239 (257)
53 2yz2_A Putative ABC transporte 100.0 7.6E-45 2.6E-49 404.7 23.3 213 978-1204 3-228 (266)
54 2pcj_A ABC transporter, lipopr 100.0 7.9E-45 2.7E-49 394.2 21.9 207 977-1197 4-222 (224)
55 2yyz_A Sugar ABC transporter, 100.0 1.6E-44 5.3E-49 414.6 24.6 217 977-1210 3-229 (359)
56 2ihy_A ABC transporter, ATP-bi 100.0 5.8E-45 2E-49 407.0 20.3 214 976-1203 20-252 (279)
57 1z47_A CYSA, putative ABC-tran 100.0 1.7E-44 5.7E-49 413.1 23.0 214 976-1204 13-236 (355)
58 2it1_A 362AA long hypothetical 100.0 1.4E-44 4.9E-49 415.4 22.1 217 977-1210 3-229 (362)
59 2cbz_A Multidrug resistance-as 100.0 3.3E-44 1.1E-48 392.5 23.6 211 328-556 4-229 (237)
60 2onk_A Molybdate/tungstate ABC 100.0 2.5E-44 8.5E-49 393.2 21.3 208 978-1204 2-217 (240)
61 2qi9_C Vitamin B12 import ATP- 100.0 4.3E-44 1.5E-48 393.2 23.3 208 977-1203 4-222 (249)
62 1v43_A Sugar-binding transport 100.0 3.1E-44 1.1E-48 414.0 23.2 217 977-1210 11-237 (372)
63 3d31_A Sulfate/molybdate ABC t 100.0 2.4E-44 8.2E-49 411.8 21.2 210 978-1204 2-218 (348)
64 1oxx_K GLCV, glucose, ABC tran 100.0 2E-44 6.7E-49 414.5 20.4 219 977-1210 3-236 (353)
65 2pze_A Cystic fibrosis transme 100.0 1.1E-43 3.7E-48 386.6 23.9 202 326-541 5-219 (229)
66 1g29_1 MALK, maltose transport 100.0 6.6E-44 2.3E-48 412.5 21.7 217 977-1210 3-235 (372)
67 2d2e_A SUFC protein; ABC-ATPas 100.0 6.7E-44 2.3E-48 393.7 19.9 210 977-1200 3-230 (250)
68 2zu0_C Probable ATP-dependent 100.0 2.1E-43 7.2E-48 392.9 22.2 217 977-1203 20-254 (267)
69 2pjz_A Hypothetical protein ST 100.0 1.7E-43 5.8E-48 391.3 19.7 208 978-1204 2-216 (263)
70 3gfo_A Cobalt import ATP-bindi 100.0 8.4E-43 2.9E-47 387.9 25.1 208 327-541 7-234 (275)
71 3tui_C Methionine import ATP-b 100.0 7.7E-43 2.6E-47 398.5 24.2 208 327-541 24-254 (366)
72 1ji0_A ABC transporter; ATP bi 100.0 1.7E-42 5.9E-47 379.9 23.6 207 328-540 7-228 (240)
73 3tif_A Uncharacterized ABC tra 100.0 4.5E-43 1.5E-47 383.0 18.8 200 329-538 20-232 (235)
74 2nq2_C Hypothetical ABC transp 100.0 7.4E-43 2.5E-47 385.0 20.5 200 977-1203 4-217 (253)
75 3rlf_A Maltose/maltodextrin im 100.0 5.1E-42 1.8E-46 394.4 22.2 206 328-542 4-225 (381)
76 3fvq_A Fe(3+) IONS import ATP- 100.0 6.4E-42 2.2E-46 391.2 22.9 207 328-541 5-229 (359)
77 2olj_A Amino acid ABC transpor 100.0 1.3E-41 4.6E-46 376.1 24.7 208 327-541 24-249 (263)
78 4g1u_C Hemin import ATP-bindin 100.0 6.6E-42 2.2E-46 380.0 21.6 208 327-541 11-238 (266)
79 1g6h_A High-affinity branched- 100.0 2.2E-41 7.4E-46 375.2 23.5 208 328-537 8-239 (257)
80 1sgw_A Putative ABC transporte 100.0 2.2E-42 7.6E-47 370.3 14.8 194 977-1192 10-210 (214)
81 2onk_A Molybdate/tungstate ABC 100.0 2.4E-41 8.3E-46 369.6 22.1 199 330-541 15-217 (240)
82 1vpl_A ABC transporter, ATP-bi 100.0 2.5E-41 8.5E-46 372.8 22.0 208 326-541 14-236 (256)
83 2yyz_A Sugar ABC transporter, 100.0 3.8E-41 1.3E-45 386.4 23.8 205 328-541 4-224 (359)
84 2bbs_A Cystic fibrosis transme 100.0 2.6E-41 9E-46 378.8 21.9 201 326-541 39-248 (290)
85 2pcj_A ABC transporter, lipopr 100.0 2.1E-41 7.2E-46 367.3 20.2 200 328-534 5-222 (224)
86 1b0u_A Histidine permease; ABC 100.0 4.8E-41 1.7E-45 372.8 23.4 207 328-541 7-243 (262)
87 2it1_A 362AA long hypothetical 100.0 3.2E-41 1.1E-45 387.5 21.1 205 328-541 4-224 (362)
88 1z47_A CYSA, putative ABC-tran 100.0 5E-41 1.7E-45 384.3 21.5 206 327-541 14-236 (355)
89 1v43_A Sugar-binding transport 100.0 7.7E-41 2.6E-45 385.8 23.1 205 328-541 12-232 (372)
90 2ihy_A ABC transporter, ATP-bi 100.0 4.4E-41 1.5E-45 375.6 19.1 206 327-540 21-252 (279)
91 3d31_A Sulfate/molybdate ABC t 100.0 1.2E-40 4.1E-45 381.3 23.0 197 329-541 15-218 (348)
92 2yz2_A Putative ABC transporte 100.0 2.5E-40 8.4E-45 368.3 23.9 196 329-541 22-228 (266)
93 1oxx_K GLCV, glucose, ABC tran 100.0 8.1E-41 2.8E-45 384.4 19.0 202 330-541 21-231 (353)
94 1g29_1 MALK, maltose transport 100.0 9.8E-41 3.4E-45 385.9 19.7 205 328-541 4-230 (372)
95 2qi9_C Vitamin B12 import ATP- 100.0 3.3E-40 1.1E-44 362.3 22.0 196 330-540 16-222 (249)
96 2d2e_A SUFC protein; ABC-ATPas 100.0 2.3E-40 7.7E-45 365.4 16.7 203 328-537 4-230 (250)
97 2pjz_A Hypothetical protein ST 100.0 7.3E-40 2.5E-44 362.2 19.2 191 329-541 20-216 (263)
98 2zu0_C Probable ATP-dependent 100.0 3.6E-39 1.2E-43 358.8 24.6 207 327-540 20-254 (267)
99 2nq2_C Hypothetical ABC transp 100.0 4.5E-39 1.5E-43 354.8 18.6 191 328-540 5-217 (253)
100 1sgw_A Putative ABC transporte 100.0 1.8E-38 6.2E-43 340.0 14.5 185 327-529 10-210 (214)
101 2v9p_A Replication protein E1; 100.0 3.4E-39 1.2E-43 361.5 -17.3 236 910-1219 40-277 (305)
102 1tf7_A KAIC; homohexamer, hexa 100.0 1.3E-34 4.5E-39 354.7 1.3 170 978-1191 258-444 (525)
103 2iw3_A Elongation factor 3A; a 100.0 8.9E-31 3E-35 331.0 28.8 197 976-1203 434-635 (986)
104 3ux8_A Excinuclease ABC, A sub 100.0 3.5E-32 1.2E-36 342.9 15.4 203 993-1204 31-299 (670)
105 3bk7_A ABC transporter ATP-bin 100.0 4.4E-32 1.5E-36 333.6 14.4 193 981-1190 95-304 (607)
106 1yqt_A RNAse L inhibitor; ATP- 100.0 6.6E-32 2.3E-36 329.1 13.1 196 978-1190 21-234 (538)
107 2v9p_A Replication protein E1; 100.0 4.5E-35 1.5E-39 328.1 -13.6 227 259-555 37-274 (305)
108 3ozx_A RNAse L inhibitor; ATP 100.0 5E-31 1.7E-35 320.1 15.9 191 327-539 269-476 (538)
109 3j16_B RLI1P; ribosome recycli 100.0 7.2E-30 2.5E-34 313.1 15.5 195 982-1191 82-298 (608)
110 4aby_A DNA repair protein RECN 100.0 4.9E-29 1.7E-33 297.9 13.4 201 995-1196 50-381 (415)
111 2npi_A Protein CLP1; CLP1-PCF1 100.0 5.8E-32 2E-36 321.8 -15.0 192 976-1203 117-338 (460)
112 3pih_A Uvrabc system protein A 100.0 3.2E-28 1.1E-32 308.2 15.7 107 434-541 787-903 (916)
113 4aby_A DNA repair protein RECN 99.9 3.2E-26 1.1E-30 273.4 18.2 200 330-533 51-381 (415)
114 1e69_A Chromosome segregation 99.9 2.4E-26 8.2E-31 264.0 14.8 202 997-1200 16-310 (322)
115 2vf7_A UVRA2, excinuclease ABC 99.9 2.9E-26 9.8E-31 288.1 16.1 108 432-541 710-828 (842)
116 2r6f_A Excinuclease ABC subuni 99.9 3.8E-26 1.3E-30 286.0 15.5 107 433-541 826-943 (972)
117 2npi_A Protein CLP1; CLP1-PCF1 99.9 3.4E-28 1.2E-32 289.3 -5.0 191 327-540 118-338 (460)
118 2ygr_A Uvrabc system protein A 99.9 1.2E-25 4.3E-30 282.6 15.2 106 434-541 845-961 (993)
119 3b85_A Phosphate starvation-in 99.9 1.7E-27 5.9E-32 254.1 -4.5 159 993-1192 13-172 (208)
120 1e69_A Chromosome segregation 99.9 7.7E-25 2.6E-29 251.4 15.8 184 345-529 26-301 (322)
121 3qf7_A RAD50; ABC-ATPase, ATPa 99.9 4.2E-24 1.4E-28 248.6 13.5 82 1113-1194 276-364 (365)
122 1z6g_A Guanylate kinase; struc 99.9 5.7E-27 2E-31 253.5 -10.2 166 994-1189 11-193 (218)
123 4gp7_A Metallophosphoesterase; 99.9 5E-25 1.7E-29 228.9 3.8 149 998-1184 1-168 (171)
124 1ye8_A Protein THEP1, hypothet 99.9 7.8E-25 2.7E-29 228.1 2.9 147 1008-1194 2-159 (178)
125 3b85_A Phosphate starvation-in 99.9 5.5E-26 1.9E-30 242.5 -7.3 150 342-528 21-171 (208)
126 1ye8_A Protein THEP1, hypothet 99.9 8.2E-25 2.8E-29 228.0 1.5 147 345-531 2-159 (178)
127 2pt7_A CAG-ALFA; ATPase, prote 99.9 2E-25 6.7E-30 255.8 -4.7 141 980-1192 151-292 (330)
128 3qf7_A RAD50; ABC-ATPase, ATPa 99.9 6.7E-22 2.3E-26 230.1 19.2 84 448-531 274-364 (365)
129 1tq4_A IIGP1, interferon-induc 99.9 1.8E-24 6E-29 252.6 -6.7 168 993-1185 36-248 (413)
130 2dpy_A FLII, flagellum-specifi 99.9 3E-24 1E-28 254.2 -5.8 195 976-1203 130-344 (438)
131 4gp7_A Metallophosphoesterase; 99.9 6.4E-23 2.2E-27 213.0 1.7 149 332-521 1-168 (171)
132 1z6g_A Guanylate kinase; struc 99.8 1.7E-24 5.9E-29 234.1 -13.8 167 327-526 10-193 (218)
133 2o5v_A DNA replication and rep 99.8 2.5E-20 8.7E-25 214.3 15.3 81 1116-1201 265-354 (359)
134 3b9q_A Chloroplast SRP recepto 99.8 3E-22 1E-26 226.0 -2.2 176 996-1193 90-285 (302)
135 3sop_A Neuronal-specific septi 99.8 5.3E-22 1.8E-26 220.7 -1.8 147 345-516 4-154 (270)
136 3sop_A Neuronal-specific septi 99.8 6.4E-22 2.2E-26 220.0 -1.2 150 1008-1179 4-154 (270)
137 3aez_A Pantothenate kinase; tr 99.8 1.1E-22 3.8E-27 230.6 -7.8 179 975-1191 41-246 (312)
138 2eyu_A Twitching motility prot 99.8 3.7E-23 1.3E-27 228.8 -11.8 175 994-1177 15-242 (261)
139 2f1r_A Molybdopterin-guanine d 99.8 9.5E-23 3.2E-27 210.1 -9.1 111 1007-1138 3-125 (171)
140 2ewv_A Twitching motility prot 99.8 1.1E-22 3.9E-27 236.8 -11.9 175 994-1177 126-353 (372)
141 2og2_A Putative signal recogni 99.8 2E-21 6.8E-26 223.0 -1.6 174 997-1192 148-341 (359)
142 1znw_A Guanylate kinase, GMP k 99.8 6.2E-22 2.1E-26 212.5 -5.6 168 993-1188 9-202 (207)
143 2pt7_A CAG-ALFA; ATPase, prote 99.8 7.7E-21 2.6E-25 217.7 2.9 198 261-529 75-292 (330)
144 1tq4_A IIGP1, interferon-induc 99.8 2.9E-21 9.9E-26 225.4 -4.1 152 345-521 71-247 (413)
145 2dpy_A FLII, flagellum-specifi 99.8 3.5E-21 1.2E-25 227.9 -3.4 185 326-540 130-344 (438)
146 2i3b_A HCR-ntpase, human cance 99.8 1.7E-21 5.6E-26 204.6 -5.8 159 1006-1196 1-169 (189)
147 2o5v_A DNA replication and rep 99.8 4.6E-19 1.6E-23 203.9 12.9 81 453-538 265-354 (359)
148 2f1r_A Molybdopterin-guanine d 99.8 1E-21 3.5E-26 202.4 -8.4 111 344-475 3-125 (171)
149 2obl_A ESCN; ATPase, hydrolase 99.8 1.6E-20 5.6E-25 215.6 0.6 195 976-1202 44-254 (347)
150 1lvg_A Guanylate kinase, GMP k 99.8 3.6E-22 1.2E-26 212.5 -13.0 169 1003-1203 1-183 (198)
151 3b9q_A Chloroplast SRP recepto 99.8 1.7E-20 5.6E-25 211.8 -2.1 167 342-530 99-285 (302)
152 3aez_A Pantothenate kinase; tr 99.8 1E-20 3.5E-25 214.5 -5.4 173 323-527 39-245 (312)
153 4ad8_A DNA repair protein RECN 99.8 1.5E-18 5.2E-23 211.9 12.6 76 1115-1190 395-473 (517)
154 1cr0_A DNA primase/helicase; R 99.7 1E-18 3.6E-23 198.3 8.6 181 994-1192 23-237 (296)
155 1tf7_A KAIC; homohexamer, hexa 99.7 5.2E-20 1.8E-24 225.4 -3.3 168 992-1190 24-210 (525)
156 2og2_A Putative signal recogni 99.7 9.4E-20 3.2E-24 209.1 -1.1 166 342-529 156-341 (359)
157 3qkt_A DNA double-strand break 99.7 2.4E-17 8.3E-22 190.3 17.8 75 1114-1188 246-327 (339)
158 2o8b_B DNA mismatch repair pro 99.7 2.8E-18 9.7E-23 221.7 11.0 172 976-1200 749-939 (1022)
159 2i3b_A HCR-ntpase, human cance 99.7 3.8E-20 1.3E-24 194.2 -6.0 157 344-532 2-168 (189)
160 2jeo_A Uridine-cytidine kinase 99.7 1.4E-19 4.9E-24 199.4 -2.0 167 992-1203 11-187 (245)
161 3qkt_A DNA double-strand break 99.7 7.7E-17 2.6E-21 186.1 18.4 77 449-525 244-327 (339)
162 1znw_A Guanylate kinase, GMP k 99.7 6.3E-20 2.2E-24 196.8 -7.0 159 341-525 18-202 (207)
163 2ewv_A Twitching motility prot 99.7 1.8E-20 6.1E-25 218.3 -12.3 166 342-514 135-353 (372)
164 1lw7_A Transcriptional regulat 99.7 9.9E-20 3.4E-24 212.8 -6.6 176 995-1202 157-354 (365)
165 2eyu_A Twitching motility prot 99.7 1.7E-20 5.8E-25 207.5 -12.8 165 342-513 24-241 (261)
166 1f2t_B RAD50 ABC-ATPase; DNA d 99.7 4.7E-17 1.6E-21 163.0 11.5 88 442-529 41-142 (148)
167 3asz_A Uridine kinase; cytidin 99.7 1.6E-19 5.6E-24 194.2 -7.7 140 1003-1175 3-161 (211)
168 1pzn_A RAD51, DNA repair and r 99.7 1.9E-18 6.5E-23 199.6 0.2 166 995-1202 119-314 (349)
169 1f2t_B RAD50 ABC-ATPase; DNA d 99.7 5.5E-17 1.9E-21 162.6 10.7 87 1105-1191 41-141 (148)
170 1lvg_A Guanylate kinase, GMP k 99.7 3E-20 1E-24 197.6 -15.4 156 343-526 4-173 (198)
171 1ewq_A DNA mismatch repair pro 99.7 2.5E-17 8.5E-22 206.6 5.8 147 975-1181 548-704 (765)
172 1w1w_A Structural maintenance 99.7 2.2E-16 7.5E-21 188.6 13.8 73 1116-1188 333-410 (430)
173 3thx_A DNA mismatch repair pro 99.7 1E-16 3.6E-21 204.3 10.9 167 976-1201 630-811 (934)
174 2gza_A Type IV secretion syste 99.7 1E-18 3.5E-23 203.0 -7.1 148 979-1129 137-300 (361)
175 4a74_A DNA repair and recombin 99.6 5.5E-17 1.9E-21 176.8 6.1 147 1002-1190 21-200 (231)
176 2ehv_A Hypothetical protein PH 99.6 6.7E-18 2.3E-22 186.6 -1.4 180 978-1188 7-206 (251)
177 2obl_A ESCN; ATPase, hydrolase 99.6 1.3E-17 4.4E-22 191.6 0.9 184 327-539 45-254 (347)
178 3jvv_A Twitching mobility prot 99.6 4.3E-17 1.5E-21 187.7 4.3 147 981-1190 92-246 (356)
179 1w1w_A Structural maintenance 99.6 4.9E-16 1.7E-20 185.6 13.2 73 453-525 333-410 (430)
180 3szr_A Interferon-induced GTP- 99.6 2.7E-18 9.4E-23 212.4 -7.6 190 977-1202 10-236 (608)
181 1cr0_A DNA primase/helicase; R 99.6 5.8E-16 2E-20 175.7 10.3 179 330-529 25-237 (296)
182 1pui_A ENGB, probable GTP-bind 99.6 1.4E-17 4.9E-22 178.7 -3.1 170 978-1164 4-198 (210)
183 1rj9_A FTSY, signal recognitio 99.6 8.4E-17 2.9E-21 181.5 2.8 146 1005-1177 101-260 (304)
184 1odf_A YGR205W, hypothetical 3 99.6 8.7E-18 3E-22 188.4 -6.7 129 1005-1151 30-169 (290)
185 3asz_A Uridine kinase; cytidin 99.6 5.4E-18 1.9E-22 182.3 -8.2 138 342-512 5-161 (211)
186 3kta_B Chromosome segregation 99.6 2E-15 6.9E-20 155.2 11.2 79 1114-1192 62-146 (173)
187 2gza_A Type IV secretion syste 99.6 3E-19 1E-23 207.4 -19.7 212 249-467 51-301 (361)
188 2qag_C Septin-7; cell cycle, c 99.6 4.8E-17 1.6E-21 190.7 -1.2 166 976-1178 10-180 (418)
189 3szr_A Interferon-induced GTP- 99.6 5.2E-17 1.8E-21 201.0 -1.2 181 327-539 10-236 (608)
190 1lw7_A Transcriptional regulat 99.6 1.8E-17 6.1E-22 193.7 -5.4 73 343-417 170-250 (365)
191 1pzn_A RAD51, DNA repair and r 99.6 1.1E-16 3.8E-21 184.8 1.2 157 341-539 129-314 (349)
192 1rj9_A FTSY, signal recognitio 99.6 9.4E-16 3.2E-20 172.9 8.8 147 342-515 101-261 (304)
193 3kta_B Chromosome segregation 99.6 3.1E-15 1.1E-19 153.8 11.3 80 450-529 61-146 (173)
194 4a74_A DNA repair and recombin 99.6 3.6E-16 1.2E-20 170.3 3.9 151 341-528 23-201 (231)
195 2qnr_A Septin-2, protein NEDD5 99.6 6.2E-17 2.1E-21 183.3 -2.6 163 981-1177 2-169 (301)
196 2o8b_B DNA mismatch repair pro 99.6 2.7E-15 9.2E-20 194.0 11.9 142 343-535 789-937 (1022)
197 1odf_A YGR205W, hypothetical 3 99.6 3.5E-17 1.2E-21 183.5 -6.7 127 344-488 32-169 (290)
198 2ehv_A Hypothetical protein PH 99.6 1.5E-16 5.1E-21 175.7 -1.9 160 341-526 28-207 (251)
199 2w0m_A SSO2452; RECA, SSPF, un 99.5 2.8E-15 9.7E-20 163.4 6.8 165 993-1190 9-192 (235)
200 1ewq_A DNA mismatch repair pro 99.5 9.6E-16 3.3E-20 192.3 3.2 142 327-531 566-715 (765)
201 2jeo_A Uridine-cytidine kinase 99.5 1.9E-16 6.6E-21 174.3 -3.7 171 328-540 13-187 (245)
202 1s96_A Guanylate kinase, GMP k 99.5 9.9E-16 3.4E-20 164.7 1.2 141 1001-1203 11-160 (219)
203 3thx_B DNA mismatch repair pro 99.5 2.2E-15 7.4E-20 191.6 3.8 157 976-1183 639-804 (918)
204 3thx_A DNA mismatch repair pro 99.5 2.1E-14 7.1E-19 183.2 11.5 150 328-539 650-812 (934)
205 3c8u_A Fructokinase; YP_612366 99.5 2.5E-17 8.6E-22 176.7 -13.4 118 1003-1144 19-140 (208)
206 2qnr_A Septin-2, protein NEDD5 99.5 8.5E-16 2.9E-20 173.9 -1.9 145 345-514 20-169 (301)
207 2qag_B Septin-6, protein NEDD5 99.5 3.7E-15 1.3E-19 173.5 3.4 181 977-1174 16-218 (427)
208 2qag_C Septin-7; cell cycle, c 99.5 1.8E-15 6.1E-20 177.4 -0.2 162 326-515 10-180 (418)
209 1wb9_A DNA mismatch repair pro 99.5 6.7E-15 2.3E-19 185.8 4.4 166 976-1195 576-750 (800)
210 2cvh_A DNA repair and recombin 99.5 2.4E-14 8.3E-19 154.6 8.1 151 994-1190 7-185 (220)
211 3jvv_A Twitching mobility prot 99.5 7.4E-15 2.5E-19 169.1 3.7 121 345-527 125-246 (356)
212 1nlf_A Regulatory protein REPA 99.5 6.9E-14 2.4E-18 157.0 11.4 151 1002-1178 26-184 (279)
213 1nij_A Hypothetical protein YJ 99.5 2.1E-16 7.3E-21 180.5 -9.3 153 1007-1176 5-190 (318)
214 1pui_A ENGB, probable GTP-bind 99.5 2.2E-15 7.4E-20 161.6 -1.7 160 328-499 4-196 (210)
215 1nij_A Hypothetical protein YJ 99.5 3.3E-16 1.1E-20 178.9 -9.5 153 344-513 5-190 (318)
216 1s96_A Guanylate kinase, GMP k 99.5 4.5E-15 1.5E-19 159.5 -0.8 140 341-540 14-160 (219)
217 1zp6_A Hypothetical protein AT 99.4 1.3E-15 4.3E-20 160.9 -5.8 139 1002-1162 5-147 (191)
218 4ad8_A DNA repair protein RECN 99.4 1.1E-13 3.6E-18 169.1 7.9 77 451-527 394-473 (517)
219 2w0m_A SSO2452; RECA, SSPF, un 99.4 1.4E-13 4.8E-18 149.9 6.8 155 341-528 21-193 (235)
220 3c8u_A Fructokinase; YP_612366 99.4 1.2E-15 4.2E-20 163.4 -10.9 136 342-514 21-160 (208)
221 3thx_B DNA mismatch repair pro 99.4 2.1E-13 7.1E-18 173.5 7.0 151 327-529 660-814 (918)
222 1n0w_A DNA repair protein RAD5 99.4 3.9E-13 1.3E-17 147.4 8.3 146 1002-1190 20-209 (243)
223 1nlf_A Regulatory protein REPA 99.4 6.5E-13 2.2E-17 149.1 8.4 149 341-515 28-184 (279)
224 1wb9_A DNA mismatch repair pro 99.3 1.9E-13 6.4E-18 172.6 3.8 151 327-532 595-750 (800)
225 2yhs_A FTSY, cell division pro 99.3 5.4E-13 1.8E-17 156.9 7.0 156 997-1177 284-450 (503)
226 2cvh_A DNA repair and recombin 99.3 2.5E-12 8.6E-17 138.7 11.5 141 341-527 18-185 (220)
227 1zp6_A Hypothetical protein AT 99.3 2.4E-14 8.2E-19 151.1 -4.8 135 342-498 8-146 (191)
228 2qm8_A GTPase/ATPase; G protei 99.3 5E-14 1.7E-18 161.8 -3.2 177 979-1163 31-259 (337)
229 2oap_1 GSPE-2, type II secreti 99.3 6.5E-15 2.2E-19 177.5 -11.1 174 993-1182 247-458 (511)
230 2bdt_A BH3686; alpha-beta prot 99.3 4.4E-16 1.5E-20 164.3 -19.6 165 1006-1201 2-182 (189)
231 1htw_A HI0065; nucleotide-bind 99.3 1.9E-13 6.3E-18 138.8 -1.7 86 982-1076 12-97 (158)
232 3auy_A DNA double-strand break 99.3 9.2E-12 3.1E-16 145.4 10.4 75 451-525 278-359 (371)
233 1sxj_E Activator 1 40 kDa subu 99.2 3.7E-12 1.3E-16 148.2 6.5 138 1008-1178 38-177 (354)
234 3auy_A DNA double-strand break 99.2 1E-11 3.5E-16 145.0 10.2 74 1115-1188 279-359 (371)
235 1n0w_A DNA repair protein RAD5 99.2 7.6E-12 2.6E-16 137.1 8.0 146 341-527 22-209 (243)
236 2bdt_A BH3686; alpha-beta prot 99.2 1.8E-15 6.2E-20 159.5 -20.3 160 344-538 3-182 (189)
237 1p9r_A General secretion pathw 99.2 2.5E-14 8.4E-19 167.9 -13.3 142 978-1139 144-314 (418)
238 2bbw_A Adenylate kinase 4, AK4 99.2 4.9E-13 1.7E-17 147.1 -2.2 147 1005-1163 26-197 (246)
239 3e70_C DPA, signal recognition 99.2 8.5E-12 2.9E-16 141.9 7.8 166 1002-1193 125-307 (328)
240 2kjq_A DNAA-related protein; s 99.2 1.6E-11 5.6E-16 123.5 8.2 91 995-1174 30-124 (149)
241 1sxj_E Activator 1 40 kDa subu 99.2 7.5E-12 2.6E-16 145.5 6.4 138 345-515 38-177 (354)
242 3lda_A DNA repair protein RAD5 99.2 1.2E-11 3.9E-16 144.4 7.7 147 1002-1191 174-364 (400)
243 2rcn_A Probable GTPase ENGC; Y 99.2 7.6E-12 2.6E-16 142.9 6.0 121 995-1131 205-328 (358)
244 2rcn_A Probable GTPase ENGC; Y 99.2 9.7E-12 3.3E-16 142.0 6.7 112 342-468 214-328 (358)
245 2bbw_A Adenylate kinase 4, AK4 99.2 4.2E-13 1.4E-17 147.7 -5.0 136 343-500 27-197 (246)
246 2qag_B Septin-6, protein NEDD5 99.2 2.1E-11 7.3E-16 141.9 6.6 165 330-510 30-217 (427)
247 3e70_C DPA, signal recognition 99.1 3.2E-11 1.1E-15 137.1 7.8 145 342-512 128-279 (328)
248 2yhs_A FTSY, cell division pro 99.1 3.2E-11 1.1E-15 142.0 6.7 145 342-510 292-447 (503)
249 3ec2_A DNA replication protein 99.1 3.7E-11 1.3E-15 125.3 6.2 111 1000-1176 32-144 (180)
250 3lnc_A Guanylate kinase, GMP k 99.1 3.4E-13 1.2E-17 146.9 -12.8 174 995-1192 16-213 (231)
251 2x8a_A Nuclear valosin-contain 99.1 5.9E-13 2E-17 148.5 -11.3 143 994-1159 34-190 (274)
252 3lda_A DNA repair protein RAD5 99.1 9.1E-11 3.1E-15 136.9 6.6 145 341-528 176-364 (400)
253 2yv5_A YJEQ protein; hydrolase 99.1 1.3E-11 4.5E-16 139.5 -0.5 114 1002-1129 161-300 (302)
254 2kjq_A DNAA-related protein; s 99.0 1.5E-10 5.1E-15 116.5 6.6 86 342-511 35-124 (149)
255 1p9r_A General secretion pathw 99.0 4.3E-12 1.5E-16 148.9 -7.4 120 343-477 167-315 (418)
256 2oap_1 GSPE-2, type II secreti 99.0 3.2E-12 1.1E-16 154.0 -9.8 160 343-517 260-455 (511)
257 1udx_A The GTP-binding protein 99.0 3.3E-11 1.1E-15 141.1 -1.2 153 996-1172 147-305 (416)
258 2qm8_A GTPase/ATPase; G protei 99.0 2.6E-11 8.9E-16 139.2 -3.1 154 342-499 54-258 (337)
259 1cke_A CK, MSSA, protein (cyti 99.0 1.5E-11 5E-16 133.5 -4.9 128 1006-1145 5-151 (227)
260 2yv5_A YJEQ protein; hydrolase 99.0 7.9E-11 2.7E-15 133.1 0.6 112 342-466 164-300 (302)
261 1ls1_A Signal recognition part 98.9 1.9E-09 6.6E-14 121.1 9.5 142 978-1172 77-219 (295)
262 1u0l_A Probable GTPase ENGC; p 98.9 2E-10 6.8E-15 129.9 1.5 103 1001-1104 164-290 (301)
263 1sq5_A Pantothenate kinase; P- 98.9 3.2E-11 1.1E-15 137.0 -5.1 140 975-1149 35-199 (308)
264 4e22_A Cytidylate kinase; P-lo 98.9 1.5E-10 5E-15 127.6 0.3 109 994-1112 18-144 (252)
265 3ec2_A DNA replication protein 98.9 1E-09 3.5E-14 114.3 6.6 46 469-514 98-145 (180)
266 2px0_A Flagellar biosynthesis 98.9 1.9E-09 6.5E-14 121.1 8.6 138 1004-1194 103-246 (296)
267 3euj_A Chromosome partition pr 98.9 8.2E-10 2.8E-14 130.8 5.6 65 979-1049 8-72 (483)
268 1vma_A Cell division protein F 98.9 2.4E-09 8.3E-14 120.5 8.1 98 999-1145 97-197 (306)
269 1cke_A CK, MSSA, protein (cyti 98.9 4.6E-11 1.6E-15 129.5 -6.3 126 344-481 6-150 (227)
270 1htw_A HI0065; nucleotide-bind 98.8 2.4E-10 8.3E-15 115.8 -1.2 75 331-414 24-99 (158)
271 2x8a_A Nuclear valosin-contain 98.8 1.6E-11 5.4E-16 136.9 -11.4 130 346-496 47-190 (274)
272 1u0l_A Probable GTPase ENGC; p 98.8 1.1E-09 3.8E-14 123.7 3.7 98 343-441 169-290 (301)
273 3tr0_A Guanylate kinase, GMP k 98.8 1.9E-09 6.5E-14 114.6 4.9 153 1000-1161 1-186 (205)
274 1t9h_A YLOQ, probable GTPase E 98.8 4.6E-10 1.6E-14 125.9 -0.9 94 1002-1097 169-287 (307)
275 1ni3_A YCHF GTPase, YCHF GTP-b 98.7 3.4E-11 1.2E-15 139.6 -12.2 169 1002-1198 16-208 (392)
276 3a00_A Guanylate kinase, GMP k 98.7 8.6E-10 2.9E-14 115.6 -1.3 127 1006-1142 1-169 (186)
277 2px0_A Flagellar biosynthesis 98.7 9.1E-09 3.1E-13 115.6 6.8 137 342-531 104-246 (296)
278 1in4_A RUVB, holliday junction 98.7 6.5E-11 2.2E-15 136.2 -12.2 145 993-1163 31-193 (334)
279 3lnc_A Guanylate kinase, GMP k 98.7 3.7E-11 1.3E-15 130.7 -13.8 124 342-499 26-176 (231)
280 1iy2_A ATP-dependent metallopr 98.7 5.9E-11 2E-15 133.0 -12.8 138 979-1145 51-196 (278)
281 2dr3_A UPF0273 protein PH0284; 98.7 6.9E-09 2.4E-13 113.6 3.8 167 994-1189 10-196 (247)
282 2ius_A DNA translocase FTSK; n 98.7 9.9E-10 3.4E-14 131.1 -3.6 158 998-1176 159-343 (512)
283 1udx_A The GTP-binding protein 98.7 8.3E-10 2.8E-14 129.3 -4.3 154 330-510 147-306 (416)
284 2zr9_A Protein RECA, recombina 98.6 5.9E-08 2E-12 111.5 10.8 143 1002-1197 57-237 (349)
285 4e22_A Cytidylate kinase; P-lo 98.6 3.8E-09 1.3E-13 116.3 0.4 91 342-439 26-134 (252)
286 3a00_A Guanylate kinase, GMP k 98.6 1.8E-09 6.3E-14 113.0 -2.1 126 344-479 2-169 (186)
287 1ixz_A ATP-dependent metallopr 98.6 8.7E-11 3E-15 129.7 -13.5 139 978-1145 26-172 (254)
288 3tr0_A Guanylate kinase, GMP k 98.6 2.7E-08 9.1E-13 105.7 6.2 67 342-412 6-73 (205)
289 1sq5_A Pantothenate kinase; P- 98.6 7.2E-09 2.4E-13 117.6 1.7 114 343-486 80-199 (308)
290 2dy1_A Elongation factor G; tr 98.6 1.2E-08 4.2E-13 127.5 3.9 132 1000-1177 3-138 (665)
291 1ni3_A YCHF GTPase, YCHF GTP-b 98.6 4.2E-11 1.4E-15 138.9 -17.4 166 342-535 19-208 (392)
292 1vma_A Cell division protein F 98.6 2E-08 6.7E-13 113.0 4.8 91 343-482 104-197 (306)
293 1oix_A RAS-related protein RAB 98.6 5.6E-09 1.9E-13 109.8 0.1 142 1008-1161 31-188 (191)
294 3ney_A 55 kDa erythrocyte memb 98.6 4.6E-09 1.6E-13 109.8 -0.7 80 1002-1090 15-107 (197)
295 1ls1_A Signal recognition part 98.6 9.8E-08 3.3E-12 107.2 10.1 111 343-499 98-209 (295)
296 1oix_A RAS-related protein RAB 98.6 5.7E-09 2E-13 109.7 -0.4 141 345-498 31-188 (191)
297 3k1j_A LON protease, ATP-depen 98.6 2.5E-09 8.6E-14 132.9 -3.8 157 993-1161 47-227 (604)
298 1qhl_A Protein (cell division 98.6 1.6E-09 5.5E-14 116.2 -4.9 75 977-1062 9-91 (227)
299 2r6a_A DNAB helicase, replicat 98.6 4.6E-08 1.6E-12 117.2 6.9 177 994-1192 191-401 (454)
300 1t9h_A YLOQ, probable GTPase E 98.6 5.5E-09 1.9E-13 117.2 -1.2 69 342-412 172-248 (307)
301 2qt1_A Nicotinamide riboside k 98.5 3E-08 1E-12 105.6 2.7 105 998-1142 13-117 (207)
302 1kgd_A CASK, peripheral plasma 98.5 1.7E-08 5.8E-13 105.0 0.2 80 1004-1090 3-93 (180)
303 1svm_A Large T antigen; AAA+ f 98.4 2.2E-09 7.5E-14 124.1 -8.4 137 994-1145 157-312 (377)
304 2zr9_A Protein RECA, recombina 98.4 3.7E-07 1.3E-11 104.9 9.8 74 461-534 127-237 (349)
305 1in4_A RUVB, holliday junction 98.4 1.7E-09 5.7E-14 124.4 -9.9 134 344-499 52-192 (334)
306 3euj_A Chromosome partition pr 98.4 5.5E-08 1.9E-12 115.2 2.5 52 330-385 20-71 (483)
307 2ius_A DNA translocase FTSK; n 98.4 1E-08 3.5E-13 122.4 -4.0 151 343-513 167-343 (512)
308 1iy2_A ATP-dependent metallopr 98.4 1.3E-09 4.4E-14 122.0 -11.3 108 345-474 75-190 (278)
309 3ney_A 55 kDa erythrocyte memb 98.4 3.3E-08 1.1E-12 103.3 -1.3 69 342-416 18-99 (197)
310 1ixz_A ATP-dependent metallopr 98.4 1.5E-09 5.1E-14 119.8 -12.4 112 346-481 52-171 (254)
311 2dr3_A UPF0273 protein PH0284; 98.3 1.5E-07 5E-12 103.0 3.3 67 460-526 115-196 (247)
312 2f9l_A RAB11B, member RAS onco 98.3 1.7E-07 5.7E-12 99.0 3.1 36 1125-1162 130-165 (199)
313 3k1j_A LON protease, ATP-depen 98.3 5.8E-08 2E-12 120.6 -1.0 144 343-498 60-227 (604)
314 2ce7_A Cell division protein F 98.3 1E-06 3.6E-11 104.8 9.2 113 995-1178 40-167 (476)
315 1qhl_A Protein (cell division 98.3 4.6E-08 1.6E-12 104.9 -2.9 56 344-399 28-91 (227)
316 2f9l_A RAB11B, member RAS onco 98.2 3.5E-07 1.2E-11 96.6 3.5 136 345-498 7-164 (199)
317 1kgd_A CASK, peripheral plasma 98.2 6.5E-08 2.2E-12 100.6 -2.8 71 342-416 4-85 (180)
318 2qtf_A Protein HFLX, GTP-bindi 98.2 7.9E-07 2.7E-11 102.7 5.4 143 1008-1163 181-352 (364)
319 3tau_A Guanylate kinase, GMP k 98.2 5.8E-07 2E-11 95.7 3.9 71 1004-1078 6-87 (208)
320 3nwj_A ATSK2; P loop, shikimat 98.2 1.3E-07 4.3E-12 103.3 -1.4 52 977-1030 17-72 (250)
321 2qtf_A Protein HFLX, GTP-bindi 98.2 1E-06 3.5E-11 101.8 6.0 143 344-499 180-351 (364)
322 3uie_A Adenylyl-sulfate kinase 98.2 8E-08 2.7E-12 101.7 -3.4 52 993-1045 12-65 (200)
323 2r6a_A DNAB helicase, replicat 98.2 2.2E-06 7.7E-11 102.5 8.7 168 340-529 200-401 (454)
324 3kta_A Chromosome segregation 98.2 3.8E-07 1.3E-11 94.8 1.3 67 997-1064 18-90 (182)
325 2qt1_A Nicotinamide riboside k 98.1 6.9E-07 2.4E-11 95.0 3.0 101 342-482 20-120 (207)
326 1zu4_A FTSY; GTPase, signal re 98.1 7E-07 2.4E-11 101.2 3.0 70 995-1064 94-173 (320)
327 3vaa_A Shikimate kinase, SK; s 98.1 7.3E-07 2.5E-11 94.2 2.9 45 986-1030 5-49 (199)
328 4eun_A Thermoresistant glucoki 98.1 4.1E-07 1.4E-11 96.2 0.9 60 1000-1064 23-82 (200)
329 2dy1_A Elongation factor G; tr 98.1 6.7E-07 2.3E-11 111.8 2.8 130 342-515 8-139 (665)
330 3t34_A Dynamin-related protein 98.1 8.6E-07 3E-11 102.8 3.6 161 994-1173 25-212 (360)
331 3cr8_A Sulfate adenylyltranfer 98.1 1.5E-07 5.1E-12 114.1 -3.2 70 1002-1076 365-446 (552)
332 2j41_A Guanylate kinase; GMP, 98.1 1.1E-06 3.6E-11 93.3 2.3 62 1001-1065 1-62 (207)
333 2dhr_A FTSH; AAA+ protein, hex 98.0 1.3E-07 4.6E-12 113.1 -6.2 139 979-1146 42-188 (499)
334 2xau_A PRE-mRNA-splicing facto 98.0 5.7E-06 2E-10 105.0 6.8 68 1115-1182 189-260 (773)
335 4eun_A Thermoresistant glucoki 98.0 1.2E-06 4.3E-11 92.5 0.5 56 341-401 27-82 (200)
336 2e87_A Hypothetical protein PH 97.9 8E-06 2.7E-10 94.5 6.5 62 1115-1177 230-294 (357)
337 2ce7_A Cell division protein F 97.9 1.5E-05 5.2E-10 94.8 8.9 61 456-516 93-168 (476)
338 3ice_A Transcription terminati 97.9 1.4E-06 4.8E-11 98.6 -0.3 55 975-1031 131-199 (422)
339 3hr8_A Protein RECA; alpha and 97.9 7.5E-06 2.6E-10 93.6 5.7 59 1002-1063 57-116 (356)
340 1jjv_A Dephospho-COA kinase; P 97.9 3.8E-06 1.3E-10 89.1 2.9 69 1117-1188 60-131 (206)
341 1jjv_A Dephospho-COA kinase; P 97.9 5E-06 1.7E-10 88.2 3.3 69 454-525 60-131 (206)
342 2e87_A Hypothetical protein PH 97.9 3.2E-05 1.1E-09 89.5 10.1 62 450-512 228-292 (357)
343 2vp4_A Deoxynucleoside kinase; 97.8 9.8E-07 3.3E-11 95.5 -2.8 64 1000-1067 14-87 (230)
344 2ffh_A Protein (FFH); SRP54, s 97.8 6.2E-05 2.1E-09 88.0 11.5 161 980-1173 79-246 (425)
345 2z43_A DNA repair and recombin 97.8 1.1E-05 3.6E-10 92.1 4.2 28 1002-1029 103-130 (324)
346 3cr8_A Sulfate adenylyltranfer 97.8 1.6E-06 5.5E-11 105.1 -2.8 68 342-414 368-447 (552)
347 3kl4_A SRP54, signal recogniti 97.8 4E-05 1.4E-09 89.7 8.7 40 1005-1044 96-135 (433)
348 1svm_A Large T antigen; AAA+ f 97.8 8.3E-07 2.8E-11 102.5 -5.6 126 342-482 168-312 (377)
349 3tau_A Guanylate kinase, GMP k 97.7 3.6E-06 1.2E-10 89.5 -1.6 70 342-415 7-87 (208)
350 2j41_A Guanylate kinase; GMP, 97.7 1.7E-05 6E-10 83.8 3.6 57 342-401 5-61 (207)
351 2xau_A PRE-mRNA-splicing facto 97.7 6.3E-05 2.1E-09 95.5 9.0 67 451-517 188-257 (773)
352 4a1f_A DNAB helicase, replicat 97.7 6.9E-05 2.4E-09 85.0 8.4 37 995-1031 35-71 (338)
353 2dhr_A FTSH; AAA+ protein, hex 97.6 1.8E-06 6.2E-11 103.3 -5.0 115 345-483 66-188 (499)
354 3tqc_A Pantothenate kinase; bi 97.6 4.4E-06 1.5E-10 94.2 -1.7 110 345-485 94-210 (321)
355 3t34_A Dynamin-related protein 97.6 3.9E-05 1.3E-09 88.8 6.0 36 344-379 35-72 (360)
356 1rz3_A Hypothetical protein rb 97.6 1.9E-05 6.4E-10 83.4 2.9 48 1003-1050 19-66 (201)
357 3uie_A Adenylyl-sulfate kinase 97.6 4E-06 1.4E-10 88.5 -2.4 40 342-382 24-65 (200)
358 1knq_A Gluconate kinase; ALFA/ 97.6 1.9E-05 6.6E-10 81.2 2.4 38 1004-1045 6-43 (175)
359 2vp4_A Deoxynucleoside kinase; 97.6 4.3E-06 1.5E-10 90.4 -3.0 60 341-404 18-87 (230)
360 1uf9_A TT1252 protein; P-loop, 97.6 9.6E-06 3.3E-10 85.5 -0.5 32 1007-1043 9-40 (203)
361 3hr8_A Protein RECA; alpha and 97.6 6E-05 2E-09 86.1 6.0 58 341-401 59-117 (356)
362 1fnn_A CDC6P, cell division co 97.5 0.00025 8.6E-09 82.7 11.4 44 1133-1177 124-171 (389)
363 3kl4_A SRP54, signal recogniti 97.4 0.00016 5.4E-09 84.7 7.8 39 343-381 97-135 (433)
364 3tqc_A Pantothenate kinase; bi 97.4 2.4E-05 8.4E-10 88.1 0.9 43 994-1036 74-124 (321)
365 1knq_A Gluconate kinase; ALFA/ 97.4 2.7E-05 9.3E-10 80.0 0.9 52 342-399 7-59 (175)
366 2z4s_A Chromosomal replication 97.4 4.6E-05 1.6E-09 90.5 3.0 66 1134-1199 194-264 (440)
367 2z43_A DNA repair and recombin 97.4 8.2E-05 2.8E-09 84.7 4.2 26 341-366 105-130 (324)
368 1v5w_A DMC1, meiotic recombina 97.4 0.00012 4E-09 84.1 5.3 28 1002-1029 118-145 (343)
369 2pez_A Bifunctional 3'-phospho 97.3 2.9E-05 9.8E-10 80.2 -0.1 41 1004-1045 3-45 (179)
370 1fnn_A CDC6P, cell division co 97.3 0.00053 1.8E-08 79.9 10.1 45 470-515 124-172 (389)
371 1zu4_A FTSY; GTPase, signal re 97.3 8E-05 2.7E-09 84.2 2.8 60 342-401 104-173 (320)
372 1sxj_C Activator 1 40 kDa subu 97.3 5.1E-05 1.7E-09 87.1 1.0 43 994-1036 32-76 (340)
373 1ega_A Protein (GTP-binding pr 97.3 7E-05 2.4E-09 84.3 2.0 150 1005-1185 7-170 (301)
374 1rz3_A Hypothetical protein rb 97.2 6.8E-05 2.3E-09 79.1 1.4 43 343-385 22-64 (201)
375 4a1f_A DNAB helicase, replicat 97.2 0.00063 2.2E-08 77.1 9.3 98 341-485 44-141 (338)
376 3kta_A Chromosome segregation 97.2 5.5E-05 1.9E-09 78.2 0.6 56 345-400 28-89 (182)
377 3lxx_A GTPase IMAP family memb 97.2 0.0012 4.1E-08 71.4 11.0 28 1008-1035 31-58 (239)
378 3lxx_A GTPase IMAP family memb 97.2 0.0014 4.6E-08 71.0 11.1 29 344-372 30-58 (239)
379 1ypw_A Transitional endoplasmi 97.2 7.7E-05 2.6E-09 95.2 1.1 32 1001-1032 233-264 (806)
380 2ffh_A Protein (FFH); SRP54, s 97.1 0.00088 3E-08 78.3 9.7 142 343-510 98-246 (425)
381 2z4s_A Chromosomal replication 97.1 0.00042 1.4E-08 82.2 7.1 43 470-512 193-237 (440)
382 1uf9_A TT1252 protein; P-loop, 97.1 3.5E-05 1.2E-09 81.1 -2.3 31 344-379 9-39 (203)
383 3b9p_A CG5977-PA, isoform A; A 97.1 0.0013 4.6E-08 73.5 10.5 71 1118-1188 97-187 (297)
384 1lv7_A FTSH; alpha/beta domain 97.1 0.0018 6.2E-08 70.8 11.1 46 995-1044 36-81 (257)
385 1mky_A Probable GTP-binding pr 97.1 0.00019 6.7E-09 85.2 3.4 68 1008-1075 182-262 (439)
386 3llm_A ATP-dependent RNA helic 97.1 0.00052 1.8E-08 74.2 6.4 131 1003-1169 73-212 (235)
387 1mky_A Probable GTP-binding pr 97.1 0.00031 1.1E-08 83.5 5.0 69 344-412 181-262 (439)
388 1f6b_A SAR1; gtpases, N-termin 97.1 0.00012 4E-09 76.9 1.2 56 984-1042 6-69 (198)
389 2p67_A LAO/AO transport system 97.1 8.2E-05 2.8E-09 85.3 -0.1 52 994-1045 44-95 (341)
390 3m6a_A ATP-dependent protease 97.1 9.9E-05 3.4E-09 90.0 0.5 79 980-1062 86-164 (543)
391 2qby_A CDC6 homolog 1, cell di 97.1 0.00029 9.9E-09 81.9 4.4 31 1004-1034 43-73 (386)
392 3m6a_A ATP-dependent protease 97.0 0.00011 3.9E-09 89.5 0.5 37 342-378 107-143 (543)
393 2www_A Methylmalonic aciduria 96.9 0.00024 8.4E-09 81.5 2.4 42 1005-1046 73-114 (349)
394 3b9p_A CG5977-PA, isoform A; A 96.9 0.0025 8.7E-08 71.2 10.6 70 455-524 97-186 (297)
395 1m7g_A Adenylylsulfate kinase; 96.9 0.00016 5.4E-09 76.8 0.5 44 1001-1044 20-65 (211)
396 1l8q_A Chromosomal replication 96.9 0.0012 4E-08 75.0 7.7 27 1006-1032 37-63 (324)
397 4eaq_A DTMP kinase, thymidylat 96.9 0.00035 1.2E-08 75.2 2.9 44 996-1040 13-59 (229)
398 1kag_A SKI, shikimate kinase I 96.9 0.00036 1.2E-08 71.3 2.9 33 1005-1041 3-35 (173)
399 2qor_A Guanylate kinase; phosp 96.9 0.00021 7.2E-09 75.4 1.2 53 1002-1054 8-71 (204)
400 1j8m_F SRP54, signal recogniti 96.9 0.0019 6.6E-08 72.1 9.1 50 997-1047 89-139 (297)
401 1u94_A RECA protein, recombina 96.9 0.0034 1.2E-07 71.9 11.2 48 994-1041 49-99 (356)
402 2pez_A Bifunctional 3'-phospho 96.9 0.00011 3.7E-09 75.8 -1.4 39 342-381 4-44 (179)
403 3nwj_A ATSK2; P loop, shikimat 96.8 0.00033 1.1E-08 76.2 1.9 41 327-367 17-72 (250)
404 1m2o_B GTP-binding protein SAR 96.8 0.00059 2E-08 70.9 3.8 33 995-1028 13-45 (190)
405 3r20_A Cytidylate kinase; stru 96.8 0.00011 3.6E-09 78.9 -2.1 69 1006-1074 9-95 (233)
406 2gj8_A MNME, tRNA modification 96.7 0.00073 2.5E-08 69.0 3.8 27 1004-1030 2-28 (172)
407 1l8q_A Chromosomal replication 96.7 0.0022 7.4E-08 72.9 7.5 44 469-512 96-141 (324)
408 2w58_A DNAI, primosome compone 96.7 0.0017 5.8E-08 68.1 6.1 26 1007-1032 55-80 (202)
409 3bh0_A DNAB-like replicative h 96.7 0.00075 2.6E-08 76.3 3.5 35 994-1028 56-90 (315)
410 2w58_A DNAI, primosome compone 96.7 0.0011 3.9E-08 69.5 4.6 27 344-370 55-81 (202)
411 3h4m_A Proteasome-activating n 96.6 0.0043 1.5E-07 68.9 9.4 28 1003-1030 48-75 (285)
412 4fcw_A Chaperone protein CLPB; 96.6 0.0022 7.6E-08 72.1 7.1 31 1007-1037 48-78 (311)
413 3r20_A Cytidylate kinase; stru 96.6 0.00015 5E-09 77.9 -2.6 69 344-412 10-96 (233)
414 3cf0_A Transitional endoplasmi 96.6 0.0028 9.5E-08 71.2 7.6 39 1000-1040 43-81 (301)
415 2qby_A CDC6 homolog 1, cell di 96.6 0.00051 1.8E-08 79.8 1.6 28 343-370 45-72 (386)
416 4dcu_A GTP-binding protein ENG 96.6 0.003 1E-07 75.4 8.2 58 1119-1178 87-144 (456)
417 1v5w_A DMC1, meiotic recombina 96.6 0.0013 4.5E-08 75.2 4.9 26 341-366 120-145 (343)
418 3llm_A ATP-dependent RNA helic 96.6 0.0035 1.2E-07 67.5 7.9 125 343-503 76-209 (235)
419 1kag_A SKI, shikimate kinase I 96.5 0.00088 3E-08 68.3 2.8 26 344-369 5-30 (173)
420 3bos_A Putative DNA replicatio 96.5 0.0015 5E-08 70.3 4.5 28 1005-1032 51-78 (242)
421 2www_A Methylmalonic aciduria 96.5 0.0006 2.1E-08 78.2 1.1 40 343-382 74-113 (349)
422 1ega_A Protein (GTP-binding pr 96.5 0.001 3.4E-08 74.7 2.9 139 345-516 10-163 (301)
423 4eaq_A DTMP kinase, thymidylat 96.5 0.00099 3.4E-08 71.6 2.7 48 328-376 11-58 (229)
424 1ypw_A Transitional endoplasmi 96.5 0.0008 2.7E-08 85.9 2.3 47 998-1046 503-549 (806)
425 1sxj_D Activator 1 41 kDa subu 96.5 0.00066 2.2E-08 78.0 1.3 43 1134-1177 133-175 (353)
426 1f2t_A RAD50 ABC-ATPase; DNA d 96.4 0.0016 5.4E-08 64.9 3.6 30 997-1027 15-44 (149)
427 3ice_A Transcription terminati 96.4 0.0007 2.4E-08 76.7 1.0 45 323-367 129-198 (422)
428 2jaq_A Deoxyguanosine kinase; 96.4 0.00021 7.2E-09 75.1 -3.2 69 1008-1076 2-86 (205)
429 3vaa_A Shikimate kinase, SK; s 96.4 0.0016 5.4E-08 68.3 3.6 37 328-367 13-49 (199)
430 1m7g_A Adenylylsulfate kinase; 96.3 0.00057 1.9E-08 72.5 -0.1 39 342-380 24-64 (211)
431 1sxj_C Activator 1 40 kDa subu 96.3 0.0016 5.3E-08 74.6 3.5 28 345-372 48-75 (340)
432 1lv7_A FTSH; alpha/beta domain 96.3 0.012 4.2E-07 64.1 10.4 33 345-379 47-79 (257)
433 2qor_A Guanylate kinase; phosp 96.3 0.00075 2.6E-08 71.1 0.6 27 342-368 11-37 (204)
434 1njg_A DNA polymerase III subu 96.3 0.0018 6.1E-08 69.5 3.5 45 1133-1178 125-169 (250)
435 2ohf_A Protein OLA1, GTP-bindi 96.2 0.0018 6.3E-08 74.6 3.4 41 1002-1042 18-69 (396)
436 1y63_A LMAJ004144AAA protein; 96.2 0.0018 6.3E-08 66.9 3.0 32 998-1029 2-33 (184)
437 2yvu_A Probable adenylyl-sulfa 96.2 0.00096 3.3E-08 69.1 0.8 41 1002-1042 9-50 (186)
438 3n70_A Transport activator; si 96.2 0.013 4.4E-07 57.8 8.6 28 1005-1032 23-50 (145)
439 2i1q_A DNA repair and recombin 96.1 0.0022 7.7E-08 72.7 3.3 27 1002-1028 94-120 (322)
440 2qag_A Septin-2, protein NEDD5 96.1 0.00054 1.8E-08 79.0 -2.3 58 975-1041 15-72 (361)
441 3bos_A Putative DNA replicatio 96.1 0.0023 7.9E-08 68.7 2.9 27 343-369 52-78 (242)
442 2p5t_B PEZT; postsegregational 96.1 0.002 6.7E-08 70.4 2.3 43 1002-1046 28-70 (253)
443 3bh0_A DNAB-like replicative h 96.0 0.0053 1.8E-07 69.3 5.9 30 454-483 134-163 (315)
444 1sxj_D Activator 1 41 kDa subu 96.0 0.0021 7.3E-08 73.7 2.6 43 471-514 133-175 (353)
445 3h4m_A Proteasome-activating n 96.0 0.0084 2.9E-07 66.5 7.4 24 344-367 52-75 (285)
446 2wji_A Ferrous iron transport 96.0 0.0041 1.4E-07 62.7 4.4 24 1007-1030 4-27 (165)
447 3dm5_A SRP54, signal recogniti 96.0 0.032 1.1E-06 65.3 12.4 35 1005-1039 99-133 (443)
448 3n70_A Transport activator; si 96.0 0.013 4.5E-07 57.7 8.0 26 345-370 26-51 (145)
449 3t61_A Gluconokinase; PSI-biol 96.0 0.0023 7.8E-08 67.2 2.4 35 1006-1044 18-52 (202)
450 2jaq_A Deoxyguanosine kinase; 96.0 0.00038 1.3E-08 73.1 -3.7 23 345-367 2-24 (205)
451 3lxw_A GTPase IMAP family memb 96.0 0.013 4.5E-07 63.5 8.3 58 1119-1177 87-151 (247)
452 2wji_A Ferrous iron transport 95.9 0.0063 2.2E-07 61.3 5.3 24 345-368 5-28 (165)
453 2q6t_A DNAB replication FORK h 95.9 0.011 3.9E-07 70.0 8.2 129 994-1148 188-324 (444)
454 1np6_A Molybdopterin-guanine d 95.9 0.0034 1.2E-07 64.1 3.0 37 1007-1043 7-46 (174)
455 2gj8_A MNME, tRNA modification 95.9 0.0049 1.7E-07 62.7 4.2 25 343-367 4-28 (172)
456 2wjg_A FEOB, ferrous iron tran 95.9 0.0035 1.2E-07 64.5 3.1 22 1008-1029 9-30 (188)
457 1njg_A DNA polymerase III subu 95.9 0.0021 7E-08 69.0 1.4 45 470-515 125-169 (250)
458 1np6_A Molybdopterin-guanine d 95.8 0.003 1E-07 64.5 2.4 38 343-380 6-46 (174)
459 3cf0_A Transitional endoplasmi 95.8 0.021 7.1E-07 64.0 9.5 26 343-368 49-74 (301)
460 4fcw_A Chaperone protein CLPB; 95.8 0.014 4.8E-07 65.5 8.1 30 345-374 49-78 (311)
461 3uk6_A RUVB-like 2; hexameric 95.8 0.013 4.5E-07 67.5 7.8 41 1004-1044 68-108 (368)
462 2wjg_A FEOB, ferrous iron tran 95.8 0.0052 1.8E-07 63.2 3.9 22 345-366 9-30 (188)
463 1u94_A RECA protein, recombina 95.7 0.028 9.5E-07 64.3 10.1 27 341-367 61-87 (356)
464 3lxw_A GTPase IMAP family memb 95.7 0.021 7.3E-07 61.8 8.7 24 344-367 22-45 (247)
465 3d8b_A Fidgetin-like protein 1 95.7 0.033 1.1E-06 64.0 10.6 26 1005-1030 116-141 (357)
466 4dcu_A GTP-binding protein ENG 95.7 0.006 2E-07 72.7 4.4 55 456-513 87-142 (456)
467 2v1u_A Cell division control p 95.6 0.0084 2.9E-07 69.4 5.5 28 1004-1031 42-69 (387)
468 2qz4_A Paraplegin; AAA+, SPG7, 95.6 0.047 1.6E-06 59.3 11.2 26 1005-1030 38-63 (262)
469 3t61_A Gluconokinase; PSI-biol 95.6 0.0026 9E-08 66.7 0.7 31 344-378 19-49 (202)
470 2zej_A Dardarin, leucine-rich 95.5 0.006 2.1E-07 62.7 3.2 25 1008-1032 4-28 (184)
471 1ex7_A Guanylate kinase; subst 95.5 0.0058 2E-07 63.0 3.0 45 1009-1055 4-61 (186)
472 2if2_A Dephospho-COA kinase; a 95.5 0.0058 2E-07 64.0 3.0 21 345-365 3-23 (204)
473 2yvu_A Probable adenylyl-sulfa 95.5 0.005 1.7E-07 63.6 2.4 33 342-374 12-44 (186)
474 3dm5_A SRP54, signal recogniti 95.4 0.076 2.6E-06 62.1 12.4 27 344-370 101-127 (443)
475 2if2_A Dephospho-COA kinase; a 95.4 0.007 2.4E-07 63.4 3.4 21 1008-1028 3-23 (204)
476 3qks_A DNA double-strand break 95.4 0.0081 2.8E-07 63.1 3.6 30 997-1027 15-44 (203)
477 2zej_A Dardarin, leucine-rich 95.4 0.0077 2.6E-07 61.9 3.4 26 345-370 4-29 (184)
478 2ohf_A Protein OLA1, GTP-bindi 95.3 0.0089 3.1E-07 68.9 4.2 36 343-378 22-68 (396)
479 2vhj_A Ntpase P4, P4; non- hyd 95.3 0.028 9.4E-07 62.6 7.7 28 1001-1028 118-145 (331)
480 2p67_A LAO/AO transport system 95.3 0.0047 1.6E-07 70.6 1.5 39 342-380 55-93 (341)
481 1f2t_A RAD50 ABC-ATPase; DNA d 95.2 0.0093 3.2E-07 59.2 3.3 20 345-364 25-44 (149)
482 2ga8_A Hypothetical 39.9 kDa p 95.2 0.0026 8.8E-08 72.0 -0.9 37 994-1030 10-48 (359)
483 3syl_A Protein CBBX; photosynt 95.2 0.094 3.2E-06 58.6 12.1 26 1006-1031 67-92 (309)
484 3ihw_A Centg3; RAS, centaurin, 95.2 0.013 4.4E-07 60.3 4.5 35 1008-1042 22-65 (184)
485 1xp8_A RECA protein, recombina 95.2 0.065 2.2E-06 61.4 10.7 28 1002-1029 70-97 (366)
486 1jal_A YCHF protein; nucleotid 95.2 0.012 4.3E-07 67.0 4.7 36 1006-1041 2-48 (363)
487 3ihw_A Centg3; RAS, centaurin, 95.2 0.018 6.1E-07 59.2 5.5 35 345-379 22-65 (184)
488 2p5t_B PEZT; postsegregational 95.2 0.007 2.4E-07 66.0 2.5 37 344-382 33-69 (253)
489 2b8t_A Thymidine kinase; deoxy 95.2 0.021 7.1E-07 60.6 6.0 51 1134-1188 89-150 (223)
490 2chg_A Replication factor C sm 95.1 0.055 1.9E-06 56.7 9.3 44 1133-1177 101-144 (226)
491 1ko7_A HPR kinase/phosphatase; 95.1 0.013 4.3E-07 65.4 4.2 33 995-1028 134-166 (314)
492 3uk6_A RUVB-like 2; hexameric 95.0 0.035 1.2E-06 63.9 8.0 36 343-378 70-105 (368)
493 3d8b_A Fidgetin-like protein 1 95.0 0.04 1.4E-06 63.2 8.4 24 344-367 118-141 (357)
494 1qhx_A CPT, protein (chloramph 95.0 0.011 3.9E-07 60.2 3.4 26 1006-1031 3-28 (178)
495 3cm0_A Adenylate kinase; ATP-b 95.0 0.0096 3.3E-07 61.2 2.8 27 1004-1030 2-28 (186)
496 1xwi_A SKD1 protein; VPS4B, AA 94.9 0.12 4E-06 58.4 11.7 27 1004-1030 43-69 (322)
497 2qz4_A Paraplegin; AAA+, SPG7, 94.9 0.059 2E-06 58.5 9.0 24 344-367 40-63 (262)
498 1fzq_A ADP-ribosylation factor 94.9 0.012 4.1E-07 60.3 3.2 23 1007-1029 17-39 (181)
499 2orw_A Thymidine kinase; TMTK, 94.9 0.022 7.4E-07 58.7 5.1 52 1134-1189 76-138 (184)
500 3kb2_A SPBC2 prophage-derived 94.9 0.012 4.1E-07 59.5 3.1 23 345-367 3-25 (173)
No 1
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=8.8e-192 Score=1903.23 Aligned_cols=1204 Identities=36% Similarity=0.551 Sum_probs=1022.9
Q ss_pred chHHHHhhccchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCC------------------ChHHHHH----HH-
Q 047171 3 TKGGLFRYADGKDKLLLLFGTVGSIGDGMMTPLTMYILSMVINELGTS------------------DISISIE----AV- 59 (1224)
Q Consensus 3 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~------------------~~~~~~~----~~- 59 (1224)
.+++||+|+.++++++++++++++++++++.|++++++|+++|.+... ....+.. .+
T Consensus 61 ~~~~Lfrya~~~d~~l~~~g~~~a~~~G~~~p~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (1321)
T 4f4c_A 61 SIPQLYRYTTTLEKLLLFIGTLVAVITGAGLPLMSILQGKVSQAFINEQIVINNNGSTFLPTGQNYTKTDFEHDVMNVVW 140 (1321)
T ss_dssp CHHHHTTTCCHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHTTSCBCSSTTCBCCHHHHHHHHHHHHH
T ss_pred CHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccchHHHHHHHHHHHH
Confidence 478899999999898899999999999999999999999999875210 0111111 00
Q ss_pred -------HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhccCCCCCHHHHHHHHHhhHHHHHHHHHhHHHH
Q 047171 60 -------DK---VPEKGMCWTRTAERQASRIRMEYLKSVLRQEVGFFDNQTSSSSTFQVVTNITSDAHSIQDAVAEKIPN 129 (1224)
Q Consensus 60 -------~~---~~~~~~~~~~~~~~~~~~lR~~~~~~l~~~~~~~f~~~~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~ 129 (1224)
.. .+++.+++.++++++..++|.++|+|++++|++|||+ + ++|++++|+++|++.+++++++.++.
T Consensus 141 ~~~~l~i~~~~~~~~~~~~~~~~~~r~~~~lR~~~~~~ll~~~~~~fd~---~-~~G~l~sr~~~D~~~i~~~~~~~l~~ 216 (1321)
T 4f4c_A 141 SYAAMTVGMWAAGQITVTCYLYVAEQMNNRLRREFVKSILRQEISWFDT---N-HSGTLATKLFDNLERVKEGTGDKIGM 216 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHH---T-CCTTHHHHHHHHHHHHHHTSSHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCC---C-ChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 0678889999999999999999999999999999999 5 99999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHH
Q 047171 130 CLAHLTSFIGSILVAFLLSWRLALAALPFSLLFIVPGIVFGKVLKDLGAQGKDAYEAAGGIAEQAISSIRTVYSFVGEHQ 209 (1224)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~vk~~~~e~~ 209 (1224)
++..+++++++++++|+++|+|++++++++|+++++..++.++.++..++.++..+++++.++|.++|||+||+|++|+.
T Consensus 217 ~~~~~~~~i~~~i~~~~~~~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~ 296 (1321)
T 4f4c_A 217 AFQYLSQFITGFIVAFTHSWQLTLVMLAVTPIQALCGFAIAKSMSTFAIRETLRYAKAGKVVEETISSIRTVVSLNGLRY 296 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHCHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcccHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047171 210 TLKRFSLALRKNMELGIKQGLTKGLLLGSM-GMTYGAWAFQSWVGSVLVTERGEKGGLVFVAGICTILGGVGIMSALPNL 288 (1224)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 288 (1224)
+.++|.+..++..+...+.....++..+.. ++.++++++++|+|++++.+|.+++|.+++++.++..+..|+..+.+.+
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~~~~~~ 376 (1321)
T 4f4c_A 297 ELERYSTAVEEAKKAGVLKGLFLGISFGAMQASNFISFALAFYIGVGWVHDGSLNFGDMLTTFSSVMMGSMALGLAGPQL 376 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999988888888877 7778888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhccCCCCCCCcccccccccccccEEEEeEEEECCCC-------------CCCCEEEEEcCCCCc
Q 047171 289 SFISQATTAATRIFEMIDRVPVINSEDEIGKTLAYLRGEIEFKDVDFSYPTR-------------PDTPTIGLVGSSGSG 355 (1224)
Q Consensus 289 ~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~-------------~~~~~~~ivG~sGsG 355 (1224)
..++++.++++||+++++.+|+++...+.+..+.+.+|+|+|+||+|+||++ ++|+++|||||||||
T Consensus 377 ~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsG 456 (1321)
T 4f4c_A 377 AVLGTAQGAASGIYEVLDRKPVIDSSSKAGRKDMKIKGDITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCG 456 (1321)
T ss_dssp HHHHHHHHHHHHHHHHTTTSCCSSCSSSCCCCCCCCCCCEEEEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEECSSSC
T ss_pred HHHHHHHHHHHHHHHHHcCCccccccccccccCCCCCCcEEEEEeeeeCCCCCCCceeeceEEeecCCcEEEEEecCCCc
Confidence 9999999999999999998877654433333344567899999999999753 256699999999999
Q ss_pred HHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcccEEecCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHH
Q 047171 356 KSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFSTSIKENILIGKPGASMETVVKAAQAANVHDF 435 (1224)
Q Consensus 356 KSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~ 435 (1224)
||||+++|+|+|+|++|+|.+||+|+++++.+++|++||||+||||||++||+|||+||+|+++++++++||+.+++++|
T Consensus 457 KSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~TI~eNI~~g~~~~~~~~v~~a~~~a~l~~~ 536 (1321)
T 4f4c_A 457 KSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLGKEGITREEMVAACKMANAEKF 536 (1321)
T ss_dssp HHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHhccccccccCcccCCCccchhccHHHHhhcccccCCcceeeCCchhHHHhhhcccchHHHHHHHHHHccchhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhccccccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCCcchh
Q 047171 436 IMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQASQGRTMIIIAHRLSTI 515 (1224)
Q Consensus 436 i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~i~H~l~~~ 515 (1224)
|+.||+||||.+||+|.+||||||||||||||+++||+||||||||||||+++|+.++++|+++.+|||+|+||||++++
T Consensus 537 i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~iiiaHrls~i 616 (1321)
T 4f4c_A 537 IKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIAHRLSTI 616 (1321)
T ss_dssp HHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEEECSCTTTT
T ss_pred HHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCEEEEEcccHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCEEEEEeCceEEeecChHHHHhhccCCCchHHHHHHHHHHhhhhhcccCCCCCCCCcccccccCCCCCCCCCCCCCC
Q 047171 516 RKADLIGVLQSGRVIESGSHDVLMQMNNGEGGAYSKMVQLQQSAMRNEVASGSYNPTKSKSHHSLMSAQTPHTPINEGSS 595 (1224)
Q Consensus 516 ~~ad~i~vl~~G~i~~~g~~~~l~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 595 (1224)
++||+|+||++|+|+|+|+|+||+++ +|.|+++++.|......+...+............................
T Consensus 617 ~~aD~Iivl~~G~ive~Gth~eL~~~----~g~y~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 692 (1321)
T 4f4c_A 617 RNADLIISCKNGQVVEVGDHRALMAQ----QGLYYDLVTAQTFTDAVDSAAEGKFSRENSVARQTSEHEGLSRQASEMDD 692 (1321)
T ss_dssp TTCSEEEEEETTEEEEEECHHHHHTT----TCHHHHHHHHHHHHHHHHHHHCC---------------------------
T ss_pred HhCCEEEEeeCCeeeccCCHHHHHHh----hhHHHHHHHhhhcccccccccccccccccccccccccccccccccccccc
Confidence 99999999999999999999999998 89999999988654332211000000000000000000000000000000
Q ss_pred C-CCCCCCCC-CCCccccccCcccccccc--cccCccCCCCCCCchHHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHH
Q 047171 596 Y-QNSPIYPL-SPTFSISMTGSFQMHSVE--NQNDKNFHDNSHSPSSLLRLLRMSAIEWKRTLLGCLGSAGSGAIYPSYA 671 (1224)
Q Consensus 596 ~-~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 671 (1224)
. ........ .................. ....+...........+++++++.++.|..++++++++.+.+.+.|.++
T Consensus 693 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~ 772 (1321)
T 4f4c_A 693 IMNRVRSSTIGSITNGPVIDEKEERIGKDALSRLKQELEENNAQKTNLFEILYHARPHALSLFIGMSTATIGGFIYPTYS 772 (1321)
T ss_dssp -----------------------CCCCCCHHHHHHHTTTTSCCCCCCHHHHHHHTGGGHHHHHHHHHHHHHGGGHHHHHH
T ss_pred hhhhhhccccccccCCcchhHHHhhccchhHHHHHHHHHHcCCcceeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 00000000 000000000000000000 0000001112233456677788888899999999999999999999999
Q ss_pred HHHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCC
Q 047171 672 YCLGSVVSAYFIKDDSKLKSETRLYCLIFLGLAFLTLIANLIQHYNFAIMGEHLVQRVREKMLEKIFTFEIGWFDQDENT 751 (1224)
Q Consensus 672 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~fd~~~~~ 751 (1224)
++++.+++.+... .........+|.++|++++++..++.++..+++.+.+.++..++|.++|++++++|++|||..+++
T Consensus 773 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~~~ffd~~~~~ 851 (1321)
T 4f4c_A 773 VFFTSFMNVFAGN-PADFLSQGHFWALMFLVLAAAQGICSFLMTFFMGIASESLTRDLRNKLFRNVLSQHIGFFDSPQNA 851 (1321)
T ss_dssp HHHHHHHHHTSSC-SSTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCSSSTTSGGGC
T ss_pred HHHHHHHHHhcCC-chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhccCCCC
Confidence 9999988876543 223334556788899999999999999999999999999999999999999999999999988899
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047171 752 SAAICARLANEAHLVRSFIADRMSLLIQVFFSASLAYTLSLLVTWRVAIVMIAVQPLNIGCFYSRSVLMKSMSEKAKKSQ 831 (1224)
Q Consensus 752 ~g~l~~rls~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~ 831 (1224)
+|++++|+++|++.++..++..+..++..++.++++++++++.+|.+++++++++|+++++.+.+.+.......+..+..
T Consensus 852 ~G~i~~r~s~D~~~i~~~l~~~l~~~~~~~~~~i~~~~~~~~~~~~l~lv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 931 (1321)
T 4f4c_A 852 SGKISTRLATDVPNLRTAIDFRFSTVITTLVSMVAGIGLAFFYGWQMALLIIAILPIVAFGQYLRGRRFTGKNVKSASEF 931 (1321)
T ss_dssp HHHHHHHHHTHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTSCCSSCSTTTSSHH
T ss_pred hHHHHhcchhhHHHHHHHHHHHHHHHHHHhhhHHHHeeeehHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999988877776655555455556667
Q ss_pred HHHHhHHHHHHccHHHHHHhccHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcC
Q 047171 832 SEGSQLASEATTNHRTITAFSSQDRILDLFRETMKGPKKESIKQSWFSGIGLFSSQFLTTASITLTFWYAGRIMNQGLVS 911 (1224)
Q Consensus 832 ~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~t 911 (1224)
++...++.|++.|+++||+|++|+.+.++|.+..+...+...+.....++...+...+..+..++++|+|+.++..+..+
T Consensus 932 ~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~ 1011 (1321)
T 4f4c_A 932 ADSGKIAIEAIENVRTVQALAREDTFYENFCEKLDIPHKEAIKEAFIQGLSYGCASSVLYLLNTCAYRMGLALIITDPPT 1011 (1321)
T ss_dssp HHHHHHHHHHHHTHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTSSSSCS
T ss_pred HHHHHHHHHHHhhHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCccc
Confidence 77888899999999999999999999999999999999999999999999999999999999999999999998887655
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCCCCCCCCCCCcccEEEEEEEEECCC
Q 047171 912 --PKQLFQAFFLLMSTGKNIADAGSMTSDIAKGSSAIRTIFTILDRKSEIDPEDPKASEDIEEPTKGFIELKNVFFSYPS 989 (1224)
Q Consensus 912 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~g~I~~~~vsf~Y~~ 989 (1224)
.+.++.++.++.....++..+...++++..+..+++|+.++++.+++.+..... ...++..|.|+|+||+|+||+
T Consensus 1012 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~---~~~~~~~g~I~f~nVsf~Y~~ 1088 (1321)
T 4f4c_A 1012 MQPMRVLRVMYAITISTSTLGFATSYFPEYAKATFAGGIIFGMLRKISKIDSLSLA---GEKKKLYGKVIFKNVRFAYPE 1088 (1321)
T ss_dssp SCHHHHHHHHHHHHTTTSSTTGGGGHHHHHHHHHHHHHHHHHHHHCCCSSCTTCCC---SBCCCCCCCEEEEEEEECCTT
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccCCCccCC---CCCCCCCCeEEEEEEEEeCCC
Confidence 444455555555555677778888999999999999999999987765433221 134566789999999999998
Q ss_pred CCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcceEEEecCCCCCccc
Q 047171 990 RPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIALVSQEPTLFAGT 1069 (1224)
Q Consensus 990 ~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qdp~LF~gT 1069 (1224)
+++.+||+|+||+|+|||+||||||||||||||+++|+|+|+|++|+|+|||+|++++++++||++|++|||||+||+||
T Consensus 1089 ~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~gT 1168 (1321)
T 4f4c_A 1089 RPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCS 1168 (1321)
T ss_dssp SCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHHTTEEEECSSCCCCSEE
T ss_pred CCCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHHHhheEEECCCCEeeCcc
Confidence 87888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHccCC--CCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeccCCCC
Q 047171 1070 IRQNIVYGK--EVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSAL 1147 (1224)
Q Consensus 1070 IreNl~~~~--~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll~~p~ILlLDEaTSaL 1147 (1224)
|||||.||. ++++|+|+++||+.|+++|||.++|+||||+|||+|.+|||||||||||||||+|+|+|||||||||+|
T Consensus 1169 IreNI~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAllr~~~ILiLDEaTSaL 1248 (1321)
T 4f4c_A 1169 IAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSAL 1248 (1321)
T ss_dssp HHHHHSSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHHHSCCSEEEEESCCCST
T ss_pred HHHHHhccCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHHHhCCCEEEEeCccccC
Confidence 999999984 468999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCCchhHHHHHHhhcc
Q 047171 1148 DSASENLVQEALEKMMVGRTCVVVAHRLSTIQKADNIVVIKNGKVVEQGTQSSLLSMGNGGAYYSLIKMQASR 1220 (1224)
Q Consensus 1148 D~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~aD~I~vl~~G~Ive~Gt~~eLl~~~~~g~y~~l~~~q~~~ 1220 (1224)
|++||+.||++|++.+++||+|+|||||+|+++||||+|||+|+|+|+|||+||+++ +|.|++||+.|...
T Consensus 1249 D~~tE~~Iq~~l~~~~~~~TvI~IAHRLsTi~~aD~I~Vld~G~IvE~Gth~eLl~~--~g~y~~L~~~Q~~e 1319 (1321)
T 4f4c_A 1249 DTESEKVVQEALDRAREGRTCIVIAHRLNTVMNADCIAVVSNGTIIEKGTHTQLMSE--KGAYYKLTQKQMTE 1319 (1321)
T ss_dssp TSHHHHHHHHHHTTTSSSSEEEEECSSSSTTTTCSEEEEESSSSEEEEECHHHHHHC--C-------------
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeccCHHHHHhCCEEEEEECCEEEEECCHHHHHhC--CcHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999999997 89999999998754
No 2
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=2.4e-168 Score=1673.28 Aligned_cols=1192 Identities=35% Similarity=0.606 Sum_probs=1026.5
Q ss_pred chHHHHhhccchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCC-----------------h----HHHHHHH--
Q 047171 3 TKGGLFRYADGKDKLLLLFGTVGSIGDGMMTPLTMYILSMVINELGTSD-----------------I----SISIEAV-- 59 (1224)
Q Consensus 3 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~-----------------~----~~~~~~~-- 59 (1224)
.++++++|.+++++.+++++++++++.+++.|+++++++.++|.+.... . ..+....
T Consensus 34 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (1284)
T 3g5u_A 34 SVLTMFRYAGWLDRLYMLVGTLAAIIHGVALPLMMLIFGDMTDSFASVGNVSKNSTNMSEADKRAMFAKLEEEMTTYAYY 113 (1284)
T ss_dssp TTHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhhhHHHHHHHHHH
Confidence 3678899988777777888999999999999999999999998763110 0 0000000
Q ss_pred ------HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhccCCCCCHHHHHHHHHhhHHHHHHHHHhHHHHH
Q 047171 60 ------DK---VPEKGMCWTRTAERQASRIRMEYLKSVLRQEVGFFDNQTSSSSTFQVVTNITSDAHSIQDAVAEKIPNC 130 (1224)
Q Consensus 60 ------~~---~~~~~~~~~~~~~~~~~~lR~~~~~~l~~~~~~~f~~~~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~ 130 (1224)
.. .+++.+++.+.++++..++|.++|+|++++|++|||+ + ++|++++|+++|++.+++.+...+..+
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~f~~---~-~~G~l~sr~~~D~~~i~~~~~~~~~~~ 189 (1284)
T 3g5u_A 114 YTGIGAGVLIVAYIQVSFWCLAAGRQIHKIRQKFFHAIMNQEIGWFDV---H-DVGELNTRLTDDVSKINEGIGDKIGMF 189 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTHHHHS---C-CSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcc---C-CHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 0667788899999999999999999999999999998 5 999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHH
Q 047171 131 LAHLTSFIGSILVAFLLSWRLALAALPFSLLFIVPGIVFGKVLKDLGAQGKDAYEAAGGIAEQAISSIRTVYSFVGEHQT 210 (1224)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~vk~~~~e~~~ 210 (1224)
+..+++++++++++++++|++++++++++|+++++..++.++.++..++.++..+++++.+.|.++|+++||+|++|+.+
T Consensus 190 ~~~~~~~i~~~~~~~~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ikaf~~e~~~ 269 (1284)
T 3g5u_A 190 FQAMATFFGGFIIGFTRGWKLTLVILAISPVLGLSAGIWAKILSSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQKKE 269 (1284)
T ss_dssp HHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCHHHHHTTCCCCSH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHhcchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047171 211 LKRFSLALRKNMELGIKQGLTKGLLLGSM-GMTYGAWAFQSWVGSVLVTERGEKGGLVFVAGICTILGGVGIMSALPNLS 289 (1224)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 289 (1224)
.++|.+..++..+...+.....++..++. ++.++++++++|+|++++..|.+++|.++++++++.....|+..+.+.+.
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 349 (1284)
T 3g5u_A 270 LERYNNNLEEAKRLGIKKAITANISMGAAFLLIYASYALAFWYGTSLVISKEYSIGQVLTVFFSVLIGAFSVGQASPNIE 349 (1284)
T ss_dssp HHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999888888888877 77778888999999999999999999999988888888889999999999
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCCCcccccccccccccEEEEeEEEECCCC-------------CCCCEEEEEcCCCCcH
Q 047171 290 FISQATTAATRIFEMIDRVPVINSEDEIGKTLAYLRGEIEFKDVDFSYPTR-------------PDTPTIGLVGSSGSGK 356 (1224)
Q Consensus 290 ~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~-------------~~~~~~~ivG~sGsGK 356 (1224)
.++++.++++|++++++.+|+.++..+.+..++...|+|+|+||+|+|+++ ++++++||||||||||
T Consensus 350 ~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sGsGK 429 (1284)
T 3g5u_A 350 AFANARGAAYEVFKIIDNKPSIDSFSKSGHKPDNIQGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGK 429 (1284)
T ss_dssp HHHHHHHHHHHHHHTTSCCCCCSSCCSSCCCCTTCCCCEEEEEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSSSSH
T ss_pred HHHHHHHHHHHHHHHHcCCCcCCcccccCCCCCCCCCeEEEEEEEEEcCCCCCCcceecceEEEcCCCEEEEECCCCCCH
Confidence 999999999999999998776543221222233456889999999999753 2567999999999999
Q ss_pred HHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcccEEecCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHH
Q 047171 357 STVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFSTSIKENILIGKPGASMETVVKAAQAANVHDFI 436 (1224)
Q Consensus 357 STl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i 436 (1224)
|||+++|+|+|+|++|+|.+||+|+++++.+++|++||||+|+|+||++||+|||.+|.++.++++++++++.+++++++
T Consensus 430 STl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i 509 (1284)
T 3g5u_A 430 STTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFI 509 (1284)
T ss_dssp HHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCSSCHHHHHHHHCSSCCHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHhheEEEcCCCccCCccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999888999999999999999999
Q ss_pred HhccccccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCCcchhh
Q 047171 437 MKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQASQGRTMIIIAHRLSTIR 516 (1224)
Q Consensus 437 ~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~i~H~l~~~~ 516 (1224)
.++|+|+||.+||+|.+|||||||||||||||+++|+|||||||||+||+++++.+++.+++..+|+|+|+||||+++++
T Consensus 510 ~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~i~ 589 (1284)
T 3g5u_A 510 MKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVR 589 (1284)
T ss_dssp HHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHHTTSEEEEECSCHHHHT
T ss_pred HhccccccccccCCCCccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998888999999999999999
Q ss_pred ccCEEEEEeCceEEeecChHHHHhhccCCCchHHHHHHHHHHhhhhhcccCCCCCCCCcccccccCCCCCCCCCCCCCCC
Q 047171 517 KADLIGVLQSGRVIESGSHDVLMQMNNGEGGAYSKMVQLQQSAMRNEVASGSYNPTKSKSHHSLMSAQTPHTPINEGSSY 596 (1224)
Q Consensus 517 ~ad~i~vl~~G~i~~~g~~~~l~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 596 (1224)
+||+|+||++|+|+++|+|+||++. ++.|.+++..|......+........ ........................
T Consensus 590 ~~d~i~vl~~G~i~~~g~~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 664 (1284)
T 3g5u_A 590 NADVIAGFDGGVIVEQGNHDELMRE----KGIYFKLVMTQTAGNEIELGNEACKS-KDEIDNLDMSSKDSGSSLIRRRST 664 (1284)
T ss_dssp TCSEEEECSSSCCCCEECHHHHHHT----TSHHHHHHHHTC---------------------------------------
T ss_pred cCCEEEEEECCEEEEECCHHHHHhC----CCHHHHHHHHhhhccccccccccccc-cccccccccccccccccccccccc
Confidence 9999999999999999999999997 89999998766432211100000000 000000000000000000000000
Q ss_pred CCCCCCCCCCCccccccCcccccccccccCccCCCCCCCchHHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 047171 597 QNSPIYPLSPTFSISMTGSFQMHSVENQNDKNFHDNSHSPSSLLRLLRMSAIEWKRTLLGCLGSAGSGAIYPSYAYCLGS 676 (1224)
Q Consensus 597 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 676 (1224)
. ........ .......++..........+++++++.++.|++++++++++++.+++.+.++++++.
T Consensus 665 ~--------~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 730 (1284)
T 3g5u_A 665 R--------KSICGPHD------QDRKLSTKEALDEDVPPASFWRILKLNSTEWPYFVVGIFCAIINGGLQPAFSVIFSK 730 (1284)
T ss_dssp ---------------------------------CCCCCSCCCTTHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred c--------cccccccc------cccccchhhhhhccccchHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 00000000 000000000011112233456677777888888888899999999999999999999
Q ss_pred HHHHHhccCc-hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCCHHHH
Q 047171 677 VVSAYFIKDD-SKLKSETRLYCLIFLGLAFLTLIANLIQHYNFAIMGEHLVQRVREKMLEKIFTFEIGWFDQDENTSAAI 755 (1224)
Q Consensus 677 ~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~fd~~~~~~g~l 755 (1224)
+++.+..... .........|.+++++++++..++.+++.+++.+.++++..++|.+++++++++|++|||.+++++|++
T Consensus 731 ~i~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~ff~~~~~~~G~l 810 (1284)
T 3g5u_A 731 VVGVFTNGGPPETQRQNSNLFSLLFLILGIISFITFFLQGFTFGKAGEILTKRLRYMVFKSMLRQDVSWFDDPKNTTGAL 810 (1284)
T ss_dssp HHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHSCSCCHHHH
T ss_pred HHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcCCCCCHHHH
Confidence 8886654332 222334556788888999999999999999999999999999999999999999999999988999999
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047171 756 CARLANEAHLVRSFIADRMSLLIQVFFSASLAYTLSLLVTWRVAIVMIAVQPLNIGCFYSRSVLMKSMSEKAKKSQSEGS 835 (1224)
Q Consensus 756 ~~rls~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 835 (1224)
++|+++|++.++..++..+..++..+..+++++++++.++|.+++++++++|+++++.+...+..+....+.++..+...
T Consensus 811 ~~rl~~D~~~i~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 890 (1284)
T 3g5u_A 811 TTRLANDAAQVKGATGSRLAVIFQNIANLGTGIIISLIYGWQLTLLLLAIVPIIAIAGVVEMKMLSGQALKDKKELEGSG 890 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999888888888887778888888888
Q ss_pred hHHHHHHccHHHHHHhccHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHH
Q 047171 836 QLASEATTNHRTITAFSSQDRILDLFRETMKGPKKESIKQSWFSGIGLFSSQFLTTASITLTFWYAGRIMNQGLVSPKQL 915 (1224)
Q Consensus 836 ~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~t~~~~ 915 (1224)
..+.|++.|+++||+|+.|+.+.++|.+..+...+...+...+.+....+.+.+..+..++++|+|++++..|.++.+.+
T Consensus 891 ~~~~e~l~gi~ti~a~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~ 970 (1284)
T 3g5u_A 891 KIATEAIENFRTVVSLTREQKFETMYAQSLQIPYRNAMKKAHVFGITFSFTQAMMYFSYAAAFRFGAYLVTQQLMTFENV 970 (1284)
T ss_dssp HHHHHHHTTCTTTTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSSCSCSTTH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCCCCCCCCCCCcccEEEEEEEEECCCCCCccc
Q 047171 916 FQAFFLLMSTGKNIADAGSMTSDIAKGSSAIRTIFTILDRKSEIDPEDPKASEDIEEPTKGFIELKNVFFSYPSRPDQMI 995 (1224)
Q Consensus 916 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~g~I~~~~vsf~Y~~~~~~~v 995 (1224)
+.++.++.....++..+....+++.++..+++|+.++++.+++.+....... .+++..|.|+|+||+|+|+++++.++
T Consensus 971 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~--~~~~~~g~i~~~~v~~~y~~~~~~~~ 1048 (1284)
T 3g5u_A 971 LLVFSAIVFGAMAVGQVSSFAPDYAKATVSASHIIRIIEKTPEIDSYSTQGL--KPNMLEGNVQFSGVVFNYPTRPSIPV 1048 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHTSSSCCSTHHHHHHHHHHHHHHSCCSSSSCCSSCC--CTTTTSCCEEEEEEEBCCSCGGGCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccccccc--cccCCCCcEEEEEEEEECCCCCCCee
Confidence 9888888888888888888888899999999999999988765433221111 22334678999999999987655679
Q ss_pred eeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcceEEEecCCCCCcccHHHHHc
Q 047171 996 FKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIALVSQEPTLFAGTIRQNIV 1075 (1224)
Q Consensus 996 L~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qdp~LF~gTIreNl~ 1075 (1224)
|+|+||+|++||++|||||||||||||+++|+|+|+|++|+|.+||+|+++++++++|++++||||||.+|++||+|||.
T Consensus 1049 l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~ 1128 (1284)
T 3g5u_A 1049 LQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIA 1128 (1284)
T ss_dssp BSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCHHHHTTSCEEEESSCCCCSSBHHHHHT
T ss_pred ecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccCCHHHHHhceEEECCCCccccccHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCC--CCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHH
Q 047171 1076 YGKE--VATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASEN 1153 (1224)
Q Consensus 1076 ~~~~--~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll~~p~ILlLDEaTSaLD~~te~ 1153 (1224)
++.+ ..++++++++++.+++++++.++|+||||.+||+|.+||||||||+||||||+++|+|||||||||+||+++++
T Consensus 1129 ~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~ 1208 (1284)
T 3g5u_A 1129 YGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEK 1208 (1284)
T ss_dssp CCCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHH
T ss_pred ccCCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHH
Confidence 9865 46899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCCchhHHHHHHhhccC
Q 047171 1154 LVQEALEKMMVGRTCVVVAHRLSTIQKADNIVVIKNGKVVEQGTQSSLLSMGNGGAYYSLIKMQASRS 1221 (1224)
Q Consensus 1154 ~I~~~l~~~~~~~TvI~IaHrl~ti~~aD~I~vl~~G~Ive~Gt~~eLl~~~~~g~y~~l~~~q~~~~ 1221 (1224)
.|++.|++..+|+|+|+||||+++++.||||+||++|+|+|+|+|+||+++ +|.|++||+.|....
T Consensus 1209 ~i~~~l~~~~~~~tvi~isH~l~~i~~~dri~vl~~G~i~~~g~~~~l~~~--~g~y~~l~~~q~~~~ 1274 (1284)
T 3g5u_A 1209 VVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLLAQ--KGIYFSMVSVQAGAK 1274 (1284)
T ss_dssp HHHHHHHHHSSSSCEEEECSCTTGGGSCSEEEEEETBEEEEEECHHHHHHS--CSHHHHHHHHHC---
T ss_pred HHHHHHHHhCCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHhC--CCHHHHHHHHHhhcc
Confidence 999999998889999999999999999999999999999999999999997 899999999886543
No 3
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=1.3e-92 Score=946.68 Aligned_cols=579 Identities=34% Similarity=0.537 Sum_probs=534.8
Q ss_pred CCchHHHHHHHHhh-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc------------------CchhhhhhHH
Q 047171 634 HSPSSLLRLLRMSA-IEWKRTLLGCLGSAGSGAIYPSYAYCLGSVVSAYFIK------------------DDSKLKSETR 694 (1224)
Q Consensus 634 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~ 694 (1224)
..+.+++++++|.. .++..++++++++++.|+..|+++++++.+++.+... ..........
T Consensus 57 ~~~v~~~~Lfrya~~~d~~l~~~g~~~a~~~G~~~p~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (1321)
T 4f4c_A 57 VNKVSIPQLYRYTTTLEKLLLFIGTLVAVITGAGLPLMSILQGKVSQAFINEQIVINNNGSTFLPTGQNYTKTDFEHDVM 136 (1321)
T ss_dssp SSCCCHHHHTTTCCHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHTTSCBCSSTTCBCCHHHHHHHHH
T ss_pred cCCCCHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccchHHHHHHHH
Confidence 44567888888764 4577788899999999999999999999888765321 0011223445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCCHHHHHHHHHhhHHHHHHHHHHHH
Q 047171 695 LYCLIFLGLAFLTLIANLIQHYNFAIMGEHLVQRVREKMLEKIFTFEIGWFDQDENTSAAICARLANEAHLVRSFIADRM 774 (1224)
Q Consensus 695 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~fd~~~~~~g~l~~rls~d~~~i~~~~~~~~ 774 (1224)
.+++.+++++++..++.+++.+++.+.++++..++|.++|++++++|++||| ++++|++++|+++|++.+++.+...+
T Consensus 137 ~~~~~~~~l~i~~~~~~~~~~~~~~~~~~r~~~~lR~~~~~~ll~~~~~~fd--~~~~G~l~sr~~~D~~~i~~~~~~~l 214 (1321)
T 4f4c_A 137 NVVWSYAAMTVGMWAAGQITVTCYLYVAEQMNNRLRREFVKSILRQEISWFD--TNHSGTLATKLFDNLERVKEGTGDKI 214 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHH--HTCCTTHHHHHHHHHHHHHHTSSHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHC--CCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677888889999999999999999999999999999999999999999999 67899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHccHHHHHHhccH
Q 047171 775 SLLIQVFFSASLAYTLSLLVTWRVAIVMIAVQPLNIGCFYSRSVLMKSMSEKAKKSQSEGSQLASEATTNHRTITAFSSQ 854 (1224)
Q Consensus 775 ~~~~~~~~~~~~~~~~~~~~~~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e 854 (1224)
..++..++.++++++++++++|.+++++++++|+.+++.+...+..++..++.++..++..+.+.|.+.|+++||+|++|
T Consensus 215 ~~~~~~~~~~i~~~i~~~~~~~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e 294 (1321)
T 4f4c_A 215 GMAFQYLSQFITGFIVAFTHSWQLTLVMLAVTPIQALCGFAIAKSMSTFAIRETLRYAKAGKVVEETISSIRTVVSLNGL 294 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhccc
Confidence 99999999999999999999999999999999999999988899999988899999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHH
Q 047171 855 DRILDLFRETMKGPKKESIKQSWFSGIGLFSSQFLTTASITLTFWYAGRIMNQGLVSPKQLFQAFFLLMSTGKNIADAGS 934 (1224)
Q Consensus 855 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~t~~~~~~~~~~~~~~~~~~~~~~~ 934 (1224)
+.+.++|.+..++..+...+.....++...+..++..+..++++|+|++++..|.++++.+++++.++.....|+..+..
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~~~~ 374 (1321)
T 4f4c_A 295 RYELERYSTAVEEAKKAGVLKGLFLGISFGAMQASNFISFALAFYIGVGWVHDGSLNFGDMLTTFSSVMMGSMALGLAGP 374 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHccCCCCCCCCCCCCCCCCCCCcccEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcC
Q 047171 935 MTSDIAKGSSAIRTIFTILDRKSEIDPEDPKASEDIEEPTKGFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQ 1014 (1224)
Q Consensus 935 ~~~~~~~~~~a~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~g~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~ 1014 (1224)
.+..+.++..+++|++++++.+++.+....... .+.+..|.|+|+||+|+||++++.++|+|+||+|+|||++|||||
T Consensus 375 ~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~--~~~~~~g~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~ 452 (1321)
T 4f4c_A 375 QLAVLGTAQGAASGIYEVLDRKPVIDSSSKAGR--KDMKIKGDITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGS 452 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTSCCSSCSSSCCC--CCCCCCCCEEEEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHcCCccccccccccc--cCCCCCCcEEEEEeeeeCCCCCCCceeeceEEeecCCcEEEEEec
Confidence 999999999999999999998776543322211 233456889999999999988888999999999999999999999
Q ss_pred CCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcceEEEecCCCCCcccHHHHHccCCCCCCHHHHHHHHHHHh
Q 047171 1015 SGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIALVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVLAN 1094 (1224)
Q Consensus 1015 SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qdp~LF~gTIreNl~~~~~~~~deei~~al~~a~ 1094 (1224)
||||||||+++|+|+|+|++|+|.+||+|++++++++||++|+||||||+||++||||||.+|+++++++++++||+.|+
T Consensus 453 sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~TI~eNI~~g~~~~~~~~v~~a~~~a~ 532 (1321)
T 4f4c_A 453 SGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLGKEGITREEMVAACKMAN 532 (1321)
T ss_dssp SSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTT
T ss_pred CCCcHHHHHHHhccccccccCcccCCCccchhccHHHHhhcccccCCcceeeCCchhHHHhhhcccchHHHHHHHHHHcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccC
Q 047171 1095 AHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHR 1174 (1224)
Q Consensus 1095 l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHr 1174 (1224)
+++||.+||+||||.|||+|.+||||||||||||||++++|+||||||||||||++||+.|+++|+++.+|||+|+||||
T Consensus 533 l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~iiiaHr 612 (1321)
T 4f4c_A 533 AEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIAHR 612 (1321)
T ss_dssp CHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEEECSC
T ss_pred chhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCEEEEEccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhcCEEEEEeCCEEEEecChhHHhhcCCCchhHHHHHHhh
Q 047171 1175 LSTIQKADNIVVIKNGKVVEQGTQSSLLSMGNGGAYYSLIKMQA 1218 (1224)
Q Consensus 1175 l~ti~~aD~I~vl~~G~Ive~Gt~~eLl~~~~~g~y~~l~~~q~ 1218 (1224)
++++++||+|+||++|+|+|+|||+||+++ +|.|++|++.|.
T Consensus 613 ls~i~~aD~Iivl~~G~ive~Gth~eL~~~--~g~y~~l~~~q~ 654 (1321)
T 4f4c_A 613 LSTIRNADLIISCKNGQVVEVGDHRALMAQ--QGLYYDLVTAQT 654 (1321)
T ss_dssp TTTTTTCSEEEEEETTEEEEEECHHHHHTT--TCHHHHHHHHHH
T ss_pred HHHHHhCCEEEEeeCCeeeccCCHHHHHHh--hhHHHHHHHhhh
Confidence 999999999999999999999999999997 899999998874
No 4
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=4.8e-85 Score=809.18 Aligned_cols=569 Identities=24% Similarity=0.383 Sum_probs=514.3
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047171 641 RLLRMSAIEWKRTLLGCLGSAGSGAIYPSYAYCLGSVVSAYFIKDDSKLKSETRLYCLIFLGLAFLTLIANLIQHYNFAI 720 (1224)
Q Consensus 641 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 720 (1224)
+++++.++.++.+++++++.++.+++.+..|++++.+++....... ......+.++++++.++..++.++..++..+
T Consensus 13 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (587)
T 3qf4_A 13 TLARYLKPYWIFAVLAPLFMVVEVICDLSQPTLLARIVDEGIARGD---FSLVLKTGILMLIVALIGAVGGIGCTVFASY 89 (587)
T ss_dssp CGGGGTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667778888888888888899999999999999987643211 1123345556667777888888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHcCCccccccCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047171 721 MGEHLVQRVREKMLEKIFTFEIGWFDQDENTSAAICARLANEAHLVRSFIADRMSLLIQVFFSASLAYTLSLLVTWRVAI 800 (1224)
Q Consensus 721 ~~~~~~~~lr~~~~~~ll~~~~~~fd~~~~~~g~l~~rls~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l 800 (1224)
.+.++..++|.+++++++++|+.||+ ++++|++++|+++|++.+++.+...+..++..++.+++++++++.++|.+++
T Consensus 90 ~~~~~~~~lr~~l~~~ll~~~~~~~~--~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~l 167 (587)
T 3qf4_A 90 ASQNFGADLRRDLFRKVLSFSISNVN--RFHTSSLITRLTNDVTQLQNLVMMLLRIVVRAPLLFVGGIVMAVSINVKLSS 167 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCHHHHH--HSCHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHCTTTTH
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHc--cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999 6789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHccHHHHHHhccHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 047171 801 VMIAVQPLNIGCFYSRSVLMKSMSEKAKKSQSEGSQLASEATTNHRTITAFSSQDRILDLFRETMKGPKKESIKQSWFSG 880 (1224)
Q Consensus 801 v~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 880 (1224)
++++++|+.+++.+...+..++..++.++..++..+.+.|.+.|+++||+|++|+.+.++|.+..+...+...+......
T Consensus 168 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (587)
T 3qf4_A 168 VLIFLIPPIVLLFVWLTKKGNPLFRKIQESTDEVNRVVRENLLGVRVVRAFRREEYENENFRKANESLRRSIISAFSLIV 247 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988888888888888888888899999999999999999999999999999999999999999888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCC
Q 047171 881 IGLFSSQFLTTASITLTFWYAGRIMNQGLVSPKQLFQAFFLLMSTGKNIADAGSMTSDIAKGSSAIRTIFTILDRKSEID 960 (1224)
Q Consensus 881 ~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~~~~ 960 (1224)
....+..++..+..++++|+|++++..|.++++.+++++.+......|+..+...+..+.++..+++|+.++++.+++.+
T Consensus 248 ~~~~~~~~~~~~~~~~vl~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~ 327 (587)
T 3qf4_A 248 FALPLFIFIVNMGMIAVLWFGGVLVRNNQMEIGSIMAYTNYLMQIMFSLMMIGNILNFIVRASASAKRVLEVLNEKPAIE 327 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccC
Confidence 88888888888889999999999999999999999999999998899999999999999999999999999998766533
Q ss_pred CCCCCCCCCCCCCCcccEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEEC
Q 047171 961 PEDPKASEDIEEPTKGFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVD 1040 (1224)
Q Consensus 961 ~~~~~~~~~~~~~~~g~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~id 1040 (1224)
+.... . ..++..+.|+++||+|+|+++ ++++|+|+||+|++||++|||||||||||||+++|+|+|+|++|+|.+|
T Consensus 328 ~~~~~-~--~~~~~~~~i~~~~v~~~y~~~-~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~ 403 (587)
T 3qf4_A 328 EADNA-L--ALPNVEGSVSFENVEFRYFEN-TDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVD 403 (587)
T ss_dssp CCTTC-B--CCSCCCCCEEEEEEEECSSSS-SCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEES
T ss_pred CCCCc-c--ccCCCCCcEEEEEEEEEcCCC-CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEC
Confidence 21111 1 122345789999999999743 4579999999999999999999999999999999999999999999999
Q ss_pred CccCCCCCHHHHhcceEEEecCCCCCcccHHHHHccCCCCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChH
Q 047171 1041 ERNIKSYNLRKLRSCIALVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGG 1120 (1224)
Q Consensus 1041 G~di~~~~~~~lR~~i~~V~Qdp~LF~gTIreNl~~~~~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGG 1120 (1224)
|+|+++++.+++|++|+||||||++|++||+|||.++.+..++++++++++.+++++++.++|+|+||.+|++|.+||||
T Consensus 404 g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgG 483 (587)
T 3qf4_A 404 ELDVRTVKLKDLRGHISAVPQETVLFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGG 483 (587)
T ss_dssp SSBGGGBCHHHHHHHEEEECSSCCCCSEEHHHHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHH
T ss_pred CEEcccCCHHHHHhheEEECCCCcCcCccHHHHHhccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHH
Confidence 99999999999999999999999999999999999998888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCEEEEecChhH
Q 047171 1121 QKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLSTIQKADNIVVIKNGKVVEQGTQSS 1200 (1224)
Q Consensus 1121 QrQRlaLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~aD~I~vl~~G~Ive~Gt~~e 1200 (1224)
||||+|||||++++|+|||||||||+||+++++.|++.|++..+++|+|+||||+++++.||||++|++|+|+|+|+|+|
T Consensus 484 qrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~i~~~g~~~e 563 (587)
T 3qf4_A 484 QKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTALLADKILVLHEGKVAGFGTHKE 563 (587)
T ss_dssp HHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHSTTCEEEEEESCHHHHTTSSEEEEEETTEEEEEECHHH
T ss_pred HHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhCCCCEEEEEecChHHHHhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred HhhcCCCchhHHHHHHhhcc
Q 047171 1201 LLSMGNGGAYYSLIKMQASR 1220 (1224)
Q Consensus 1201 Ll~~~~~g~y~~l~~~q~~~ 1220 (1224)
|+++ +|.|+++++.|.+.
T Consensus 564 l~~~--~~~~~~~~~~~~~~ 581 (587)
T 3qf4_A 564 LLEH--CKPYREIYESQFGN 581 (587)
T ss_dssp HHHH--CHHHHHHHHHHC--
T ss_pred HHhC--CcHHHHHHHHHhcc
Confidence 9986 79999999988653
No 5
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=1.1e-84 Score=808.69 Aligned_cols=571 Identities=27% Similarity=0.424 Sum_probs=522.9
Q ss_pred chHHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 047171 636 PSSLLRLLRMSAIEWKRTLLGCLGSAGSGAIYPSYAYCLGSVVSAYFIKDDSKLKSETRLYCLIFLGLAFLTLIANLIQH 715 (1224)
Q Consensus 636 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 715 (1224)
...+++++++.++.++.+++++++.++.+++.+..|++++.+++....... ......++++++++.++..++.++..
T Consensus 22 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (598)
T 3qf4_B 22 TATLRRLLGYLRPHTFTLIMVFVFVTVSSILGVLSPYLIGKTIDVVFVPRR---FDLLPRYMLILGTIYALTSLLFWLQG 98 (598)
T ss_dssp HHHHHHHGGGTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTC---GGGHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346777888888888888888888888999999999999999987653211 12234466677788888899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047171 716 YNFAIMGEHLVQRVREKMLEKIFTFEIGWFDQDENTSAAICARLANEAHLVRSFIADRMSLLIQVFFSASLAYTLSLLVT 795 (1224)
Q Consensus 716 ~~~~~~~~~~~~~lr~~~~~~ll~~~~~~fd~~~~~~g~l~~rls~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 795 (1224)
+.....+.++..++|.+++++++++|++||+ ++++|++++|+++|++.+++.+...+..++..++.+++++++++.++
T Consensus 99 ~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~--~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~ 176 (598)
T 3qf4_B 99 KIMLTLSQDVVFRLRKELFEKLQRVPVGFFD--RTPHGDIISRVINDVDNINNVLGNSIIQFFSGIVTLAGAVIMMFRVN 176 (598)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCTHHHH--HSCHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHc--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999 67899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHccHHHHHHhccHHHHHHHHHHHhhhHHHHHHHH
Q 047171 796 WRVAIVMIAVQPLNIGCFYSRSVLMKSMSEKAKKSQSEGSQLASEATTNHRTITAFSSQDRILDLFRETMKGPKKESIKQ 875 (1224)
Q Consensus 796 ~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~ 875 (1224)
|.+++++++++|+.+++.....+..++..++.++..++..+.+.|.+.|+++||+|++|+.+.++|.+..++..+...+.
T Consensus 177 ~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~ 256 (598)
T 3qf4_B 177 VILSLVTLSIVPLTVLITQIVSSQTRKYFYENQRVLGQLNGIIEEDISGLTVIKLFTREEKEMEKFDRVNESLRKVGTKA 256 (598)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999888888888888888888888899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Q 047171 876 SWFSGIGLFSSQFLTTASITLTFWYAGRIMNQGLVSPKQLFQAFFLLMSTGKNIADAGSMTSDIAKGSSAIRTIFTILDR 955 (1224)
Q Consensus 876 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~ 955 (1224)
....++...+..++..+..++++++|++++..|.++++.+++++.+......|+..+...+..+..+..+++|+.++++.
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~ls~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~ 336 (598)
T 3qf4_B 257 QIFSGVLPPLMNMVNNLGFALISGFGGWLALKDIITVGTIATFIGYSRQFTRPLNELSNQFNMIQMALASAERIFEILDL 336 (598)
T ss_dssp HHHTTTHHHHHHHHHHHHHHHHHHHHHHHGGGTSSCHHHHHHHHTTTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 99988888889999999999999999999999999999999998888888899999999999999999999999999987
Q ss_pred CCCCCCCCCCCCCCCCCCCcccEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCc
Q 047171 956 KSEIDPEDPKASEDIEEPTKGFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSG 1035 (1224)
Q Consensus 956 ~~~~~~~~~~~~~~~~~~~~g~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G 1035 (1224)
+++.+... .. ..++..|.|+++||+|+|++ +.++|+|+||+|++||++|||||||||||||+++|+|+|+|++|
T Consensus 337 ~~~~~~~~--~~--~~~~~~~~i~~~~v~~~y~~--~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G 410 (598)
T 3qf4_B 337 EEEKDDPD--AV--ELREVRGEIEFKNVWFSYDK--KKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRG 410 (598)
T ss_dssp CCCCCCSS--CC--CCCSCCCCEEEEEEECCSSS--SSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEE
T ss_pred CCCCCCCC--CC--CCCCCCCeEEEEEEEEECCC--CCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCe
Confidence 66532211 11 12334578999999999963 45699999999999999999999999999999999999999999
Q ss_pred eEEECCccCCCCCHHHHhcceEEEecCCCCCcccHHHHHccCCCCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCC
Q 047171 1036 SVMVDERNIKSYNLRKLRSCIALVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGV 1115 (1224)
Q Consensus 1036 ~I~idG~di~~~~~~~lR~~i~~V~Qdp~LF~gTIreNl~~~~~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~ 1115 (1224)
+|.+||+|+++++.+++|++++||||||.+|++||+|||.++.+..++++++++++.+++++++..+|+|+||.+|++|.
T Consensus 411 ~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~ 490 (598)
T 3qf4_B 411 QILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGE 490 (598)
T ss_dssp EEEETTEEGGGSCHHHHHHHEEEECTTCCCCSSBHHHHHHSSSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHT
T ss_pred EEEECCEEhhhCCHHHHHhceEEEeCCCccccccHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCC
Confidence 99999999999999999999999999999999999999999988888999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCEEEEe
Q 047171 1116 QLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLSTIQKADNIVVIKNGKVVEQ 1195 (1224)
Q Consensus 1116 ~LSGGQrQRlaLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~aD~I~vl~~G~Ive~ 1195 (1224)
+||||||||+|||||++++|+|||||||||+||+++++.|++.|++..+|+|+|+||||+++++.||+|++|++|+|+|+
T Consensus 491 ~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~ 570 (598)
T 3qf4_B 491 DLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKNADLIIVLRDGEIVEM 570 (598)
T ss_dssp TSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHHTTSEEEEESCCTTHHHHCSEEEEECSSSEEEC
T ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEE
Confidence 99999999999999999999999999999999999999999999998889999999999999999999999999999999
Q ss_pred cChhHHhhcCCCchhHHHHHHhhc
Q 047171 1196 GTQSSLLSMGNGGAYYSLIKMQAS 1219 (1224)
Q Consensus 1196 Gt~~eLl~~~~~g~y~~l~~~q~~ 1219 (1224)
|+|+||+++ +|.|+++++.|.+
T Consensus 571 g~~~~l~~~--~~~~~~~~~~~~~ 592 (598)
T 3qf4_B 571 GKHDELIQK--RGFYYELFTSQYG 592 (598)
T ss_dssp SCHHHHHHT--TCHHHHHHHHHHG
T ss_pred CCHHHHHhC--CCHHHHHHHHHhh
Confidence 999999986 8999999998764
No 6
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=100.00 E-value=2e-84 Score=803.94 Aligned_cols=572 Identities=27% Similarity=0.407 Sum_probs=515.5
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCchhhhhhH----HHHHHHHHHHHHHHHHHHHHH
Q 047171 639 LLRLLRMSAIEWKRTLLGCLGSAGSGAIYPSYAYCLGSVVSAYFIKDDSKLKSET----RLYCLIFLGLAFLTLIANLIQ 714 (1224)
Q Consensus 639 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~ 714 (1224)
+++++++.++.++.+++++++.++.+++.+..|++++.+++.............. ..+.++++++.++..++.++.
T Consensus 2 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (578)
T 4a82_A 2 IKRYLQFVKPYKYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIVRPPIEFIR 81 (578)
T ss_dssp HHHHHHHHGGGHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777778888888888888888888889999999999876543221001111 234445556667778888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047171 715 HYNFAIMGEHLVQRVREKMLEKIFTFEIGWFDQDENTSAAICARLANEAHLVRSFIADRMSLLIQVFFSASLAYTLSLLV 794 (1224)
Q Consensus 715 ~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~fd~~~~~~g~l~~rls~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 794 (1224)
.+...+.+.++..++|.+++++++++|++||+ ++++|++++|+++|++.+++.+...+..++..++.+++++++++.+
T Consensus 82 ~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~--~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~ 159 (578)
T 4a82_A 82 QYLAQWTSNKILYDIRKKLYNHLQALSARFYA--NNQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFL 159 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHH--TSCHHHHHHHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHc--CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999 6789999999999999999999888888888888888899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHccHHHHHHhccHHHHHHHHHHHhhhHHHHHHH
Q 047171 795 TWRVAIVMIAVQPLNIGCFYSRSVLMKSMSEKAKKSQSEGSQLASEATTNHRTITAFSSQDRILDLFRETMKGPKKESIK 874 (1224)
Q Consensus 795 ~~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~ 874 (1224)
+|.+++++++++|+.+++.....+..++..++..+..++..+.+.|.+.|+++||+|++|+.+.++|.+..++..+...+
T Consensus 160 ~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~ 239 (578)
T 4a82_A 160 DVKLTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALK 239 (578)
T ss_dssp CTTTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988888888888888888888899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 047171 875 QSWFSGIGLFSSQFLTTASITLTFWYAGRIMNQGLVSPKQLFQAFFLLMSTGKNIADAGSMTSDIAKGSSAIRTIFTILD 954 (1224)
Q Consensus 875 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~ 954 (1224)
..++.+....+..++..+..++++++|++++..|.++++.+++++.+......|+..+...+..+.++..+++|+.++++
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~ 319 (578)
T 4a82_A 240 HTRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLID 319 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999888899999999999999999999999999998
Q ss_pred cCCCCCCCCCCCCCCCCCCCcccEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCC
Q 047171 955 RKSEIDPEDPKASEDIEEPTKGFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQS 1034 (1224)
Q Consensus 955 ~~~~~~~~~~~~~~~~~~~~~g~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~ 1034 (1224)
.+++.+..... . ..++..+.|+++||+|+|++. +.++|+|+||+|++||++|||||||||||||+++|+|+++|++
T Consensus 320 ~~~~~~~~~~~-~--~~~~~~~~i~~~~v~~~y~~~-~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~ 395 (578)
T 4a82_A 320 EDYDIKNGVGA-Q--PIEIKQGRIDIDHVSFQYNDN-EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTS 395 (578)
T ss_dssp CCCSSCCCTTC-C--CCCCCSCCEEEEEEEECSCSS-SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSE
T ss_pred CCCcccCCCCc-c--ccCCCCCeEEEEEEEEEcCCC-CCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCC
Confidence 76654321111 1 122345789999999999743 4579999999999999999999999999999999999999999
Q ss_pred ceEEECCccCCCCCHHHHhcceEEEecCCCCCcccHHHHHccCCCCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCC
Q 047171 1035 GSVMVDERNIKSYNLRKLRSCIALVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERG 1114 (1224)
Q Consensus 1035 G~I~idG~di~~~~~~~lR~~i~~V~Qdp~LF~gTIreNl~~~~~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G 1114 (1224)
|+|.+||+|+++++.+++|++++||||||++|++||+|||.++.+..++++++++++.+++++++.++|+|+||.+|++|
T Consensus 396 G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g 475 (578)
T 4a82_A 396 GQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERG 475 (578)
T ss_dssp EEEEETTEEGGGSCHHHHHHTEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGG
T ss_pred cEEEECCEEhhhCCHHHHhhheEEEeCCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCC
Confidence 99999999999999999999999999999999999999999998888999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCEEEE
Q 047171 1115 VQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLSTIQKADNIVVIKNGKVVE 1194 (1224)
Q Consensus 1115 ~~LSGGQrQRlaLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~aD~I~vl~~G~Ive 1194 (1224)
.+||||||||++||||++++|+|||||||||+||+++++.+++.+++..+++|+|+||||+++++.||+|++|++|+|+|
T Consensus 476 ~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~ 555 (578)
T 4a82_A 476 VKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVE 555 (578)
T ss_dssp TTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTTCSEEEEEETTEEEE
T ss_pred CcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999999888999999999999999999999999999999
Q ss_pred ecChhHHhhcCCCchhHHHHHHhh
Q 047171 1195 QGTQSSLLSMGNGGAYYSLIKMQA 1218 (1224)
Q Consensus 1195 ~Gt~~eLl~~~~~g~y~~l~~~q~ 1218 (1224)
+|+|+||+++ +|.|+++++.|.
T Consensus 556 ~g~~~el~~~--~~~~~~~~~~q~ 577 (578)
T 4a82_A 556 TGTHRELIAK--QGAYEHLYSIQN 577 (578)
T ss_dssp EECHHHHHHT--TSHHHHHHTTTT
T ss_pred ECCHHHHHhC--CcHHHHHHHhhc
Confidence 9999999986 789999998764
No 7
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=2e-83 Score=794.63 Aligned_cols=544 Identities=25% Similarity=0.358 Sum_probs=489.1
Q ss_pred hHHHHhhccchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCC-ChHHHHHHH-----HH------HHHHHHHHHH
Q 047171 4 KGGLFRYADGKDKLLLLFGTVGSIGDGMMTPLTMYILSMVINELGTS-DISISIEAV-----DK------VPEKGMCWTR 71 (1224)
Q Consensus 4 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~-~~~~~~~~~-----~~------~~~~~~~~~~ 71 (1224)
++++++|.+++++ .+++++++.++.+++.+..|+++++++|.+... +...+.... .. .++..++..+
T Consensus 11 ~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (587)
T 3qf4_A 11 SKTLARYLKPYWI-FAVLAPLFMVVEVICDLSQPTLLARIVDEGIARGDFSLVLKTGILMLIVALIGAVGGIGCTVFASY 89 (587)
T ss_dssp CCCGGGGTGGGHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788887754 566777888888888899999999999986432 322221100 00 0556777888
Q ss_pred HHHHHHHHHHHHHHHHHHcCChhhhhccCCCCCHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 047171 72 TAERQASRIRMEYLKSVLRQEVGFFDNQTSSSSTFQVVTNITSDAHSIQDAVAEKIPNCLAHLTSFIGSILVAFLLSWRL 151 (1224)
Q Consensus 72 ~~~~~~~~lR~~~~~~l~~~~~~~f~~~~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 151 (1224)
.++++..++|.++|+|++++|..||++ . ++|++++|+++|++.+++++...+..++..+++++++++++++++|++
T Consensus 90 ~~~~~~~~lr~~l~~~ll~~~~~~~~~---~-~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l 165 (587)
T 3qf4_A 90 ASQNFGADLRRDLFRKVLSFSISNVNR---F-HTSSLITRLTNDVTQLQNLVMMLLRIVVRAPLLFVGGIVMAVSINVKL 165 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCHHHHHH---S-CHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHCTTT
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHcc---C-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998 5 999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHH
Q 047171 152 ALAALPFSLLFIVPGIVFGKVLKDLGAQGKDAYEAAGGIAEQAISSIRTVYSFVGEHQTLKRFSLALRKNMELGIKQGLT 231 (1224)
Q Consensus 152 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~vk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 231 (1224)
++++++++|+++++..++.++.++..++.++..+++++.+.|.++|+++||+|++|+.+.++|.+..++..+...+..+.
T Consensus 166 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 245 (587)
T 3qf4_A 166 SSVLIFLIPPIVLLFVWLTKKGNPLFRKIQESTDEVNRVVRENLLGVRVVRAFRREEYENENFRKANESLRRSIISAFSL 245 (587)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998888887
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 047171 232 KGLLLGSM-GMTYGAWAFQSWVGSVLVTERGEKGGLVFVAGICTILGGVGIMSALPNLSFISQATTAATRIFEMIDRVPV 310 (1224)
Q Consensus 232 ~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~~ 310 (1224)
.+...+.. ++..++.++++|+|++++..|.+++|.+++++.+......|+..+...+..++++.++++|++++++.+|+
T Consensus 246 ~~~~~~~~~~~~~~~~~~vl~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~ 325 (587)
T 3qf4_A 246 IVFALPLFIFIVNMGMIAVLWFGGVLVRNNQMEIGSIMAYTNYLMQIMFSLMMIGNILNFIVRASASAKRVLEVLNEKPA 325 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 77777766 66677778889999999999999999999999999999999999999999999999999999999998765
Q ss_pred CCCCcccccccccccccEEEEeEEEECCCC------------CCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECC
Q 047171 311 INSEDEIGKTLAYLRGEIEFKDVDFSYPTR------------PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDG 378 (1224)
Q Consensus 311 ~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~------------~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g 378 (1224)
.++.. .....+...+.|+++||+|+|++. ++++++|||||||||||||+++|+|+|+|++|+|.+||
T Consensus 326 ~~~~~-~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g 404 (587)
T 3qf4_A 326 IEEAD-NALALPNVEGSVSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDE 404 (587)
T ss_dssp CCCCT-TCBCCSCCCCCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESS
T ss_pred cCCCC-CccccCCCCCcEEEEEEEEEcCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECC
Confidence 43322 112223345789999999999642 35779999999999999999999999999999999999
Q ss_pred EecCCCCHHHHhcccEEecCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHH
Q 047171 379 HKIKKLQLKWLRSQMGLVNQEPILFSTSIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQ 458 (1224)
Q Consensus 379 ~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq 458 (1224)
+|+++++.+++|++||||+|+|++|++||+|||.+|.++.+++++.++++.+++++++..+|+|++|.+|++|.+|||||
T Consensus 405 ~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGq 484 (587)
T 3qf4_A 405 LDVRTVKLKDLRGHISAVPQETVLFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQ 484 (587)
T ss_dssp SBGGGBCHHHHHHHEEEECSSCCCCSEEHHHHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHH
T ss_pred EEcccCCHHHHHhheEEECCCCcCcCccHHHHHhccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHH
Confidence 99999999999999999999999999999999999998889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCCcchhhccCEEEEEeCceEEeecChHHH
Q 047171 459 KQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQASQGRTMIIIAHRLSTIRKADLIGVLQSGRVIESGSHDVL 538 (1224)
Q Consensus 459 ~qriaiARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~i~H~l~~~~~ad~i~vl~~G~i~~~g~~~~l 538 (1224)
|||++|||||+++|+|||||||||+||+++++.+++.++++.+|+|+|+||||++++..||+|++|++|+|+++|+|+||
T Consensus 485 rQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~i~~~g~~~el 564 (587)
T 3qf4_A 485 KQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTALLADKILVLHEGKVAGFGTHKEL 564 (587)
T ss_dssp HHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHSTTCEEEEEESCHHHHTTSSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhCCCCEEEEEecChHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 99999999999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred HhhccCCCchHHHHHHHHH
Q 047171 539 MQMNNGEGGAYSKMVQLQQ 557 (1224)
Q Consensus 539 ~~~~~~~~~~y~~~~~~~~ 557 (1224)
++. ++.|+++++.|.
T Consensus 565 ~~~----~~~~~~~~~~~~ 579 (587)
T 3qf4_A 565 LEH----CKPYREIYESQF 579 (587)
T ss_dssp HHH----CHHHHHHHHHHC
T ss_pred HhC----CcHHHHHHHHHh
Confidence 988 789999998764
No 8
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=2.7e-82 Score=786.33 Aligned_cols=568 Identities=28% Similarity=0.448 Sum_probs=511.5
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047171 638 SLLRLLRMSAIEWKRTLLGCLGSAGSGAIYPSYAYCLGSVVSAYFIKDDSKLKSETRLYCLIFLGLAFLTLIANLIQHYN 717 (1224)
Q Consensus 638 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 717 (1224)
.+++++++.++.++.+++++++.++.+++.++.+++++.+++....... . .......++++++.++..++.++..+.
T Consensus 12 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (582)
T 3b5x_A 12 TFKRLWTYIRLYKAGLVVSTIALVINAAADTYMISLLKPLLDEGFGNAE--S-NFLRILPFMILGLMFVRGLSGFASSYC 88 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc--h-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666777777777777788888888888889999888886643211 1 111122233566677888889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCccccccCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047171 718 FAIMGEHLVQRVREKMLEKIFTFEIGWFDQDENTSAAICARLANEAHLVRSFIADRMSLLIQVFFSASLAYTLSLLVTWR 797 (1224)
Q Consensus 718 ~~~~~~~~~~~lr~~~~~~ll~~~~~~fd~~~~~~g~l~~rls~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 797 (1224)
....+.++..++|.+++++++++|++||+ ++++|++++|+++|++.++..+...+..++..++.++++++++++++|.
T Consensus 89 ~~~~~~~~~~~lr~~l~~~ll~~~~~~~~--~~~~g~l~~rl~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~ 166 (582)
T 3b5x_A 89 LSWVSGNVVMQMRRRLFNHFMHMPVRFFD--QESTGGLLSRITYDSEQVAGATSRALVSIVREGASIIGLLTLMFWNSWQ 166 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 99999999999999999999999999999 6789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHccHHHHHHhccHHHHHHHHHHHhhhHHHHHHHHHH
Q 047171 798 VAIVMIAVQPLNIGCFYSRSVLMKSMSEKAKKSQSEGSQLASEATTNHRTITAFSSQDRILDLFRETMKGPKKESIKQSW 877 (1224)
Q Consensus 798 l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~ 877 (1224)
+++++++++|+.+++.....+..++..++.++..++..+.+.|.+.|+++||+|+.|+.+.++|.+..++..+...+..+
T Consensus 167 l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 246 (582)
T 3b5x_A 167 LSLVLIVVAPVVAFAISFVSKRFRKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTMKLVS 246 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999888877778888888888888889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Q 047171 878 FSGIGLFSSQFLTTASITLTFWYAGRIMNQGLVSPKQLFQAFFLLMSTGKNIADAGSMTSDIAKGSSAIRTIFTILDRKS 957 (1224)
Q Consensus 878 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~ 957 (1224)
...+...+..++..+..++++++|++++..|.+++|.+++++.+......|+..+...+..+.++..+++|+.++++.++
T Consensus 247 ~~~~~~~~~~~~~~~~~~~i~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~ 326 (582)
T 3b5x_A 247 AQSIADPVIQMIASLALFAVLFLASVDSIRAELTPGTFTVVFSAMFGLMRPLKALTSVTSEFQRGMAACQTLFGLMDLET 326 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998765
Q ss_pred CCCCCCCCCCCCCCCCCcccEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceE
Q 047171 958 EIDPEDPKASEDIEEPTKGFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSV 1037 (1224)
Q Consensus 958 ~~~~~~~~~~~~~~~~~~g~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I 1037 (1224)
+.++.. . ..++..+.|+++||+|+|+++ ++++|+|+||+|++||++|||||||||||||+++|+|+++|++|+|
T Consensus 327 ~~~~~~---~--~~~~~~~~i~~~~v~~~y~~~-~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i 400 (582)
T 3b5x_A 327 ERDNGK---Y--EAERVNGEVDVKDVTFTYQGK-EKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSI 400 (582)
T ss_pred cCCCCC---C--CCCCCCCeEEEEEEEEEcCCC-CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEE
Confidence 432110 0 112234679999999999742 2569999999999999999999999999999999999999999999
Q ss_pred EECCccCCCCCHHHHhcceEEEecCCCCCcccHHHHHccCC-CCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCC
Q 047171 1038 MVDERNIKSYNLRKLRSCIALVSQEPTLFAGTIRQNIVYGK-EVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQ 1116 (1224)
Q Consensus 1038 ~idG~di~~~~~~~lR~~i~~V~Qdp~LF~gTIreNl~~~~-~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~ 1116 (1224)
.+||+|+++++.+++|++++||||+|.+|++||+|||.++. +..++++++++++.+++++++.++|+||||.+|++|.+
T Consensus 401 ~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~ 480 (582)
T 3b5x_A 401 CLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTS 480 (582)
T ss_pred EECCEEhhhCCHHHHhcCeEEEcCCCccccccHHHHHhccCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCc
Confidence 99999999999999999999999999999999999999987 66789999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCEEEEec
Q 047171 1117 LSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLSTIQKADNIVVIKNGKVVEQG 1196 (1224)
Q Consensus 1117 LSGGQrQRlaLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~aD~I~vl~~G~Ive~G 1196 (1224)
||||||||++||||++++|+|||||||||+||+++++.+++.|++..+|+|+|+||||+++++.||+|++|++|+++|.|
T Consensus 481 LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g 560 (582)
T 3b5x_A 481 LSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIEQADEILVVDEGEIIERG 560 (582)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEEEC
Confidence 99999999999999999999999999999999999999999999988899999999999999999999999999999999
Q ss_pred ChhHHhhcCCCchhHHHHHHhh
Q 047171 1197 TQSSLLSMGNGGAYYSLIKMQA 1218 (1224)
Q Consensus 1197 t~~eLl~~~~~g~y~~l~~~q~ 1218 (1224)
+|+||++. ++.|+++++.|.
T Consensus 561 ~~~~l~~~--~~~~~~~~~~q~ 580 (582)
T 3b5x_A 561 RHADLLAQ--DGAYAQLHRIQF 580 (582)
T ss_pred CHHHHHhC--CcHHHHHHHHhh
Confidence 99999986 789999999885
No 9
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=1.9e-82 Score=789.66 Aligned_cols=576 Identities=32% Similarity=0.476 Sum_probs=497.8
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047171 638 SLLRLLRMSAIEWKRTLLGCLGSAGSGAIYPSYAYCLGSVVSAYFIKDDSKLKSETRLYCLIFLGLAFLTLIANLIQHYN 717 (1224)
Q Consensus 638 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 717 (1224)
.+++++++.++.++.+++++++.++.+++.++.|++++.+++................+.++++++.++..++.++..+.
T Consensus 6 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (595)
T 2yl4_A 6 EARKLLGLAYPERRRLAAAVGFLTMSSVISMSAPFFLGKIIDVIYTNPTVDYSDNLTRLCLGLSAVFLCGAAANAIRVYL 85 (595)
T ss_dssp HHHHHHHHHGGGHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHCTTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666677777777777778888888888889888888865432111111112234445566667778888889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCccccccCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047171 718 FAIMGEHLVQRVREKMLEKIFTFEIGWFDQDENTSAAICARLANEAHLVRSFIADRMSLLIQVFFSASLAYTLSLLVTWR 797 (1224)
Q Consensus 718 ~~~~~~~~~~~lr~~~~~~ll~~~~~~fd~~~~~~g~l~~rls~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 797 (1224)
....+.++..++|.+++++++++|++||+ ++++|++++|+++|++.++..+...+..++..++.++++++++++++|.
T Consensus 86 ~~~~~~~~~~~lr~~l~~~l~~~~~~~~~--~~~~g~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~ 163 (595)
T 2yl4_A 86 MQTSGQRIVNRLRTSLFSSILRQEVAFFD--KTRTGELINRLSSDTALLGRSVTENLSDGLRAGAQASVGISMMFFVSPN 163 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCHHHHH--HSCHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHC--CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 99999999999999999999999999999 6789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHccHHHHHHhccHHHHHHHHHHHhhhHHHHHHHHHH
Q 047171 798 VAIVMIAVQPLNIGCFYSRSVLMKSMSEKAKKSQSEGSQLASEATTNHRTITAFSSQDRILDLFRETMKGPKKESIKQSW 877 (1224)
Q Consensus 798 l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~ 877 (1224)
+++++++++|+.+++.....+..++..++.++..++..+.+.|.++|+++||+|++|+.+.++|.+..+...+...+...
T Consensus 164 l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 243 (595)
T 2yl4_A 164 LATFVLSVVPPVSIIAVIYGRYLRKLTKVTQDSLAQATQLAEERIGNVRTVRAFGKEMTEIEKYASKVDHVMQLARKEAF 243 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998888888888888888888888889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Q 047171 878 FSGIGLFSSQFLTTASITLTFWYAGRIMNQGLVSPKQLFQAFFLLMSTGKNIADAGSMTSDIAKGSSAIRTIFTILDRKS 957 (1224)
Q Consensus 878 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~ 957 (1224)
...+...+..++..+..++++|+|++++..|.+++|.+++++.+......|+..+...+..+.++..+++|+.++++.++
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~ 323 (595)
T 2yl4_A 244 ARAGFFGATGLSGNLIVLSVLYKGGLLMGSAHMTVGELSSFLMYAFWVGISIGGLSSFYSELMKGLGAGGRLWELLEREP 323 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 88888888888888888899999999999999999999999999999999999999999999999999999999998765
Q ss_pred CCCCCCCCCCCCCCCCCccc-EEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCce
Q 047171 958 EIDPEDPKASEDIEEPTKGF-IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGS 1036 (1224)
Q Consensus 958 ~~~~~~~~~~~~~~~~~~g~-I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~ 1036 (1224)
+.+... .. ..+++..+. |+++||+|+|+++++.++|+|+||+|++||++|||||||||||||+++|+|+++|++|+
T Consensus 324 ~~~~~~--~~-~~~~~~~~~~i~~~~v~~~y~~~~~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~ 400 (595)
T 2yl4_A 324 KLPFNE--GV-ILNEKSFQGALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGT 400 (595)
T ss_dssp SSCSSC--SB-CCCTTTCCCCEEEEEEEEECSSCTTSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCSEEE
T ss_pred ccCCCC--CC-CCCcCCCCCeEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcE
Confidence 432211 11 011223467 99999999997543457999999999999999999999999999999999999999999
Q ss_pred EEECCccCCCCCHHHHhcceEEEecCCCCCcccHHHHHccCCCC---CCHHHHHHHHHHHhHHHHHHhcccccccccCCC
Q 047171 1037 VMVDERNIKSYNLRKLRSCIALVSQEPTLFAGTIRQNIVYGKEV---ATEAEIRKAAVLANAHEFISSTEDGYDTYCGER 1113 (1224)
Q Consensus 1037 I~idG~di~~~~~~~lR~~i~~V~Qdp~LF~gTIreNl~~~~~~---~~deei~~al~~a~l~~~I~~lp~gldt~vge~ 1113 (1224)
|.+||+|+++++.+++|++++||||+|.+|++||+|||.++.+. .++++++++++.+++++++.++|+|+||.+|++
T Consensus 401 i~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~ 480 (595)
T 2yl4_A 401 ISLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEK 480 (595)
T ss_dssp EEETTEETTTBCHHHHHHSEEEECSSCCCCSSBHHHHHHTTSSSTTTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSS
T ss_pred EEECCEEhhhCCHHHHHhceEEEccCCcccCCCHHHHHhhcCCCccccCHHHHHHHHHHcCCHHHHHhCcccccccccCC
Confidence 99999999999999999999999999999999999999998765 688999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCEEE
Q 047171 1114 GVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLSTIQKADNIVVIKNGKVV 1193 (1224)
Q Consensus 1114 G~~LSGGQrQRlaLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~aD~I~vl~~G~Iv 1193 (1224)
|.+||||||||++||||++++|+|||||||||+||+++++.+++.|++..+++|+|+||||+++++.||+|++|++|+|+
T Consensus 481 ~~~LSgGq~qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~ 560 (595)
T 2yl4_A 481 GVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHRLSTIKNANMVAVLDQGKIT 560 (595)
T ss_dssp SCCCCHHHHHHHHHHHHHHHCCSEEEEECCCSSCCHHHHHHHHHHHHHHHTTSEEEEECCCHHHHHHSSEEEEEETTEEE
T ss_pred CCcCCHHHHHHHHHHHHHHcCCCEEEEECcccCCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHcCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999999999988899999999999999999999999999999
Q ss_pred EecChhHHhhcCCCchhHHHHHHhhc
Q 047171 1194 EQGTQSSLLSMGNGGAYYSLIKMQAS 1219 (1224)
Q Consensus 1194 e~Gt~~eLl~~~~~g~y~~l~~~q~~ 1219 (1224)
|.|+|+||+++ +++.|+++++.|..
T Consensus 561 ~~g~~~~l~~~-~~~~~~~~~~~q~~ 585 (595)
T 2yl4_A 561 EYGKHEELLSK-PNGIYRKLMNKQSF 585 (595)
T ss_dssp EEECSCC-------C-----------
T ss_pred EECCHHHHHhC-CChHHHHHHHHhhc
Confidence 99999999974 37899999987754
No 10
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=2.9e-84 Score=864.34 Aligned_cols=577 Identities=35% Similarity=0.566 Sum_probs=525.3
Q ss_pred chHHHHHHHHhh-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCc-----------------hhhhhhHHHHH
Q 047171 636 PSSLLRLLRMSA-IEWKRTLLGCLGSAGSGAIYPSYAYCLGSVVSAYFIKDD-----------------SKLKSETRLYC 697 (1224)
Q Consensus 636 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~ 697 (1224)
...+++++++.. ..|..++++++++++.+++.|+.+++++.+++.+..... .........|.
T Consensus 32 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (1284)
T 3g5u_A 32 AVSVLTMFRYAGWLDRLYMLVGTLAAIIHGVALPLMMLIFGDMTDSFASVGNVSKNSTNMSEADKRAMFAKLEEEMTTYA 111 (1284)
T ss_dssp -CTTHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhhhHHHHHHHH
Confidence 345667777664 467778888999999999999999999988876542110 00112334577
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCCHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 047171 698 LIFLGLAFLTLIANLIQHYNFAIMGEHLVQRVREKMLEKIFTFEIGWFDQDENTSAAICARLANEAHLVRSFIADRMSLL 777 (1224)
Q Consensus 698 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~fd~~~~~~g~l~~rls~d~~~i~~~~~~~~~~~ 777 (1224)
+++++++++..++.+++.+++.+.+.++..++|.++|++++++|++||| .+++|++++|+++|++.++..+...+..+
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~f~--~~~~G~l~sr~~~D~~~i~~~~~~~~~~~ 189 (1284)
T 3g5u_A 112 YYYTGIGAGVLIVAYIQVSFWCLAAGRQIHKIRQKFFHAIMNQEIGWFD--VHDVGELNTRLTDDVSKINEGIGDKIGMF 189 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTHHHH--SCCSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHc--cCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888899999999999999999999999999999999999999999999 67899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHccHHHHHHhccHHHH
Q 047171 778 IQVFFSASLAYTLSLLVTWRVAIVMIAVQPLNIGCFYSRSVLMKSMSEKAKKSQSEGSQLASEATTNHRTITAFSSQDRI 857 (1224)
Q Consensus 778 ~~~~~~~~~~~~~~~~~~~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~ 857 (1224)
+..++.++++++++++++|.+++++++++|+++++.....+..++..++.++..++...++.|++.|+++||+|++|+++
T Consensus 190 ~~~~~~~i~~~~~~~~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ikaf~~e~~~ 269 (1284)
T 3g5u_A 190 FQAMATFFGGFIIGFTRGWKLTLVILAISPVLGLSAGIWAKILSSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQKKE 269 (1284)
T ss_dssp HHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCHHHHHTTCCCCSH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHhcchHHH
Confidence 99999999999999999999999999999999999888888888888888889999999999999999999999999999
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047171 858 LDLFRETMKGPKKESIKQSWFSGIGLFSSQFLTTASITLTFWYAGRIMNQGLVSPKQLFQAFFLLMSTGKNIADAGSMTS 937 (1224)
Q Consensus 858 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~t~~~~~~~~~~~~~~~~~~~~~~~~~~ 937 (1224)
.++|.+..+...+...+.....+...++..++..+..++++|+|++++..|.+++|.+++++.++.....++..+...+.
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 349 (1284)
T 3g5u_A 270 LERYNNNLEEAKRLGIKKAITANISMGAAFLLIYASYALAFWYGTSLVISKEYSIGQVLTVFFSVLIGAFSVGQASPNIE 349 (1284)
T ss_dssp HHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999888888888889999999999
Q ss_pred HHHHHHHHHHHHHHHHccCCCCCCCCCCCCCCCCCCCcccEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCC
Q 047171 938 DIAKGSSAIRTIFTILDRKSEIDPEDPKASEDIEEPTKGFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGS 1017 (1224)
Q Consensus 938 ~~~~~~~a~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~g~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGs 1017 (1224)
.+..+..+++|+.++++.+++.++...... .+++..|.|+|+||+|+|+++++.++|+|+||+|+|||++||||||||
T Consensus 350 ~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~--~~~~~~g~i~~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sGs 427 (1284)
T 3g5u_A 350 AFANARGAAYEVFKIIDNKPSIDSFSKSGH--KPDNIQGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGC 427 (1284)
T ss_dssp HHHHHHHHHHHHHHTTSCCCCCSSCCSSCC--CCTTCCCCEEEEEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSSS
T ss_pred HHHHHHHHHHHHHHHHcCCCcCCcccccCC--CCCCCCCeEEEEEEEEEcCCCCCCcceecceEEEcCCCEEEEECCCCC
Confidence 999999999999999987765433211111 222346789999999999876566899999999999999999999999
Q ss_pred ChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcceEEEecCCCCCcccHHHHHccCCCCCCHHHHHHHHHHHhHHH
Q 047171 1018 GKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIALVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVLANAHE 1097 (1224)
Q Consensus 1018 GKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qdp~LF~gTIreNl~~~~~~~~deei~~al~~a~l~~ 1097 (1224)
|||||+++|+|+|+|++|+|.+||+|+++++++++|++|+||||||++|++||+|||.+|.+..++++++++++.+++++
T Consensus 428 GKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~ 507 (1284)
T 3g5u_A 428 GKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYD 507 (1284)
T ss_dssp SHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCSSCHHHHHHHHCSSCCHHHHHHHHHHTTCHH
T ss_pred CHHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHhheEEEcCCCccCCccHHHHHhcCCCCCCHHHHHHHHHHhCcHH
Confidence 99999999999999999999999999999999999999999999999999999999999988889999999999999999
Q ss_pred HHHhcccccccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchh
Q 047171 1098 FISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLST 1177 (1224)
Q Consensus 1098 ~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~t 1177 (1224)
++.++|+|+||.+||+|.+|||||||||||||||+++|+|||||||||+||+++++.+++.+++..+|+|+|+||||+++
T Consensus 508 ~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~ 587 (1284)
T 3g5u_A 508 FIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLST 587 (1284)
T ss_dssp HHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHHTTSEEEEECSCHHH
T ss_pred HHHhccccccccccCCCCccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998899999999999999
Q ss_pred hhhcCEEEEEeCCEEEEecChhHHhhcCCCchhHHHHHHhh
Q 047171 1178 IQKADNIVVIKNGKVVEQGTQSSLLSMGNGGAYYSLIKMQA 1218 (1224)
Q Consensus 1178 i~~aD~I~vl~~G~Ive~Gt~~eLl~~~~~g~y~~l~~~q~ 1218 (1224)
+++||+|+||++|+|+|+|+|+||+++ +|.|++++..|.
T Consensus 588 i~~~d~i~vl~~G~i~~~g~~~~l~~~--~~~~~~~~~~~~ 626 (1284)
T 3g5u_A 588 VRNADVIAGFDGGVIVEQGNHDELMRE--KGIYFKLVMTQT 626 (1284)
T ss_dssp HTTCSEEEECSSSCCCCEECHHHHHHT--TSHHHHHHHHTC
T ss_pred HHcCCEEEEEECCEEEEECCHHHHHhC--CCHHHHHHHHhh
Confidence 999999999999999999999999986 899999998764
No 11
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=100.00 E-value=3.4e-83 Score=792.91 Aligned_cols=543 Identities=32% Similarity=0.428 Sum_probs=489.4
Q ss_pred hHHHHhhccchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCC-C---hHHH----HHHH----H-H------HHH
Q 047171 4 KGGLFRYADGKDKLLLLFGTVGSIGDGMMTPLTMYILSMVINELGTS-D---ISIS----IEAV----D-K------VPE 64 (1224)
Q Consensus 4 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~-~---~~~~----~~~~----~-~------~~~ 64 (1224)
++++++|.+++++ .++++++++++.+++.++.|++++.++|.+... + ...+ .... . . .++
T Consensus 2 ~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (578)
T 4a82_A 2 IKRYLQFVKPYKY-RIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIVRPPIEFI 80 (578)
T ss_dssp HHHHHHHHGGGHH-HHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788999988754 556777788888888888999999999987532 1 1111 1100 0 0 056
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhccCCCCCHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 047171 65 KGMCWTRTAERQASRIRMEYLKSVLRQEVGFFDNQTSSSSTFQVVTNITSDAHSIQDAVAEKIPNCLAHLTSFIGSILVA 144 (1224)
Q Consensus 65 ~~~~~~~~~~~~~~~lR~~~~~~l~~~~~~~f~~~~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (1224)
..++..+.+.++..++|.++|+|++++|++||++ . ++|++++|+++|++.+++++...+..++.++++++++++++
T Consensus 81 ~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~---~-~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l 156 (578)
T 4a82_A 81 RQYLAQWTSNKILYDIRKKLYNHLQALSARFYAN---N-QVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIM 156 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHT---S-CHHHHHHHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHcC---C-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777888999999999999999999999999998 5 99999999999999999999998888899999999999999
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHH
Q 047171 145 FLLSWRLALAALPFSLLFIVPGIVFGKVLKDLGAQGKDAYEAAGGIAEQAISSIRTVYSFVGEHQTLKRFSLALRKNMEL 224 (1224)
Q Consensus 145 ~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~vk~~~~e~~~~~~~~~~~~~~~~~ 224 (1224)
++++|++++++++++|+++++..++.++.++..++.++..+++++.+.|.++|+++||+|++|+.+.++|++..++..+.
T Consensus 157 ~~~~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~ 236 (578)
T 4a82_A 157 FFLDVKLTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTR 236 (578)
T ss_dssp HHHCTTTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047171 225 GIKQGLTKGLLLGSM-GMTYGAWAFQSWVGSVLVTERGEKGGLVFVAGICTILGGVGIMSALPNLSFISQATTAATRIFE 303 (1224)
Q Consensus 225 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~ 303 (1224)
..+..+..+...+.. .+..++.++++++|++++..|.+++|.+++++.++.....|+..+...+..++++.++++|+++
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~ 316 (578)
T 4a82_A 237 ALKHTRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQ 316 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999888888887777 6677777888999999999999999999999999999999999999999999999999999999
Q ss_pred HhccCCCCCCCcccccccccccccEEEEeEEEECCCC------------CCCCEEEEEcCCCCcHHHHHHHHhcCCCCCC
Q 047171 304 MIDRVPVINSEDEIGKTLAYLRGEIEFKDVDFSYPTR------------PDTPTIGLVGSSGSGKSTVISLLERFYDPVK 371 (1224)
Q Consensus 304 ~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~------------~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~ 371 (1224)
+++.+++.++.. ...+.+...+.|+++||+|+|++. ++++++|||||||||||||+++|+|+|+|++
T Consensus 317 ~l~~~~~~~~~~-~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~ 395 (578)
T 4a82_A 317 LIDEDYDIKNGV-GAQPIEIKQGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTS 395 (578)
T ss_dssp HHTCCCSSCCCT-TCCCCCCCSCCEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSE
T ss_pred HHcCCCcccCCC-CccccCCCCCeEEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCC
Confidence 999876543321 112223345789999999999742 3577999999999999999999999999999
Q ss_pred cEEEECCEecCCCCHHHHhcccEEecCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhccccccccccCCC
Q 047171 372 GNILLDGHKIKKLQLKWLRSQMGLVNQEPILFSTSIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFG 451 (1224)
Q Consensus 372 G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g 451 (1224)
|+|.+||+|+++++.+++|++||||+|+|++|++||+|||.+|.++.+++++.++++.+++++++.++|+|++|.+|++|
T Consensus 396 G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g 475 (578)
T 4a82_A 396 GQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERG 475 (578)
T ss_dssp EEEEETTEEGGGSCHHHHHHTEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGG
T ss_pred cEEEECCEEhhhCCHHHHhhheEEEeCCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCC
Confidence 99999999999999999999999999999999999999999999888899999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCCcchhhccCEEEEEeCceEEe
Q 047171 452 VQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQASQGRTMIIIAHRLSTIRKADLIGVLQSGRVIE 531 (1224)
Q Consensus 452 ~~LSgGq~qriaiARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~i~H~l~~~~~ad~i~vl~~G~i~~ 531 (1224)
.+||||||||++||||++++|+|||||||||+||+++++.+.+.++++.+++|+|+||||+++++.||+|++|++|+|++
T Consensus 476 ~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~ 555 (578)
T 4a82_A 476 VKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVE 555 (578)
T ss_dssp TTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTTCSEEEEEETTEEEE
T ss_pred CcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999999888999999999999999999999999999999
Q ss_pred ecChHHHHhhccCCCchHHHHHHHH
Q 047171 532 SGSHDVLMQMNNGEGGAYSKMVQLQ 556 (1224)
Q Consensus 532 ~g~~~~l~~~~~~~~~~y~~~~~~~ 556 (1224)
+|+|+|+++. ++.|+++++.|
T Consensus 556 ~g~~~el~~~----~~~~~~~~~~q 576 (578)
T 4a82_A 556 TGTHRELIAK----QGAYEHLYSIQ 576 (578)
T ss_dssp EECHHHHHHT----TSHHHHHHTTT
T ss_pred ECCHHHHHhC----CcHHHHHHHhh
Confidence 9999999987 78999988654
No 12
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=3.1e-83 Score=795.53 Aligned_cols=545 Identities=30% Similarity=0.444 Sum_probs=491.8
Q ss_pred chHHHHhhccchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCC-ChHHHHHHH----HH-------HHHHHHHHH
Q 047171 3 TKGGLFRYADGKDKLLLLFGTVGSIGDGMMTPLTMYILSMVINELGTS-DISISIEAV----DK-------VPEKGMCWT 70 (1224)
Q Consensus 3 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~-~~~~~~~~~----~~-------~~~~~~~~~ 70 (1224)
.++++++|++++++ .++++++++++.+++.+..|++++.++|.+... +...+...+ .. .++..++..
T Consensus 24 ~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (598)
T 3qf4_B 24 TLRRLLGYLRPHTF-TLIMVFVFVTVSSILGVLSPYLIGKTIDVVFVPRRFDLLPRYMLILGTIYALTSLLFWLQGKIML 102 (598)
T ss_dssp HHHHHGGGTGGGHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35778888887644 566777888888888899999999999987532 222211110 00 056677788
Q ss_pred HHHHHHHHHHHHHHHHHHHcCChhhhhccCCCCCHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhHH
Q 047171 71 RTAERQASRIRMEYLKSVLRQEVGFFDNQTSSSSTFQVVTNITSDAHSIQDAVAEKIPNCLAHLTSFIGSILVAFLLSWR 150 (1224)
Q Consensus 71 ~~~~~~~~~lR~~~~~~l~~~~~~~f~~~~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (1224)
+.+.++..++|.++|+|++++|++||++ . ++|++++|+++|++.+++++...+..++.++++++++++++++++|+
T Consensus 103 ~~~~~~~~~lr~~l~~~ll~~~~~~~~~---~-~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~ 178 (598)
T 3qf4_B 103 TLSQDVVFRLRKELFEKLQRVPVGFFDR---T-PHGDIISRVINDVDNINNVLGNSIIQFFSGIVTLAGAVIMMFRVNVI 178 (598)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCTHHHHH---S-CHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHcC---C-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999 5 99999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHH
Q 047171 151 LALAALPFSLLFIVPGIVFGKVLKDLGAQGKDAYEAAGGIAEQAISSIRTVYSFVGEHQTLKRFSLALRKNMELGIKQGL 230 (1224)
Q Consensus 151 l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~vk~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 230 (1224)
+++++++++|+++++..++.++.++..++.++..+++++.+.|.++|+++||+|++|+.+.++|.+..++..+...+..+
T Consensus 179 l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 258 (598)
T 3qf4_B 179 LSLVTLSIVPLTVLITQIVSSQTRKYFYENQRVLGQLNGIIEEDISGLTVIKLFTREEKEMEKFDRVNESLRKVGTKAQI 258 (598)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988888
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 047171 231 TKGLLLGSM-GMTYGAWAFQSWVGSVLVTERGEKGGLVFVAGICTILGGVGIMSALPNLSFISQATTAATRIFEMIDRVP 309 (1224)
Q Consensus 231 ~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~ 309 (1224)
..++..++. ++..++.++++++|++++..|.+++|.+++++.+......|+..+...+..++++.++++|++++++.++
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~ls~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~ 338 (598)
T 3qf4_B 259 FSGVLPPLMNMVNNLGFALISGFGGWLALKDIITVGTIATFIGYSRQFTRPLNELSNQFNMIQMALASAERIFEILDLEE 338 (598)
T ss_dssp HTTTHHHHHHHHHHHHHHHHHHHHHHHGGGTSSCHHHHHHHHTTTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 888777776 6677777888999999999999999999999999988899999999999999999999999999998776
Q ss_pred CCCCCcccccccccccccEEEEeEEEECCCC-----------CCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECC
Q 047171 310 VINSEDEIGKTLAYLRGEIEFKDVDFSYPTR-----------PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDG 378 (1224)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~-----------~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g 378 (1224)
+.+.+. ....++..++|+++||+|+|++. ++++++|||||||||||||+++|+|+|+|++|+|.+||
T Consensus 339 ~~~~~~--~~~~~~~~~~i~~~~v~~~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g 416 (598)
T 3qf4_B 339 EKDDPD--AVELREVRGEIEFKNVWFSYDKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDG 416 (598)
T ss_dssp CCCCSS--CCCCCSCCCCEEEEEEECCSSSSSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETT
T ss_pred CCCCCC--CCCCCCCCCeEEEEEEEEECCCCCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECC
Confidence 543221 12223345789999999999642 35679999999999999999999999999999999999
Q ss_pred EecCCCCHHHHhcccEEecCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHH
Q 047171 379 HKIKKLQLKWLRSQMGLVNQEPILFSTSIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQ 458 (1224)
Q Consensus 379 ~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq 458 (1224)
+|+++++.+++|++||||+|+|++|++||+|||.+|.++.+++++.++++.++++++++++|+|++|.+|++|.+|||||
T Consensus 417 ~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq 496 (598)
T 3qf4_B 417 IDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQ 496 (598)
T ss_dssp EEGGGSCHHHHHHHEEEECTTCCCCSSBHHHHHHSSSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHH
T ss_pred EEhhhCCHHHHHhceEEEeCCCccccccHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHH
Confidence 99999999999999999999999999999999999998888899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCCcchhhccCEEEEEeCceEEeecChHHH
Q 047171 459 KQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQASQGRTMIIIAHRLSTIRKADLIGVLQSGRVIESGSHDVL 538 (1224)
Q Consensus 459 ~qriaiARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~i~H~l~~~~~ad~i~vl~~G~i~~~g~~~~l 538 (1224)
||||+||||++++|+|||||||||+||+++++.+++.++++.+|+|+|+||||+++++.||+|++|++|+|+++|+|+||
T Consensus 497 ~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~~l 576 (598)
T 3qf4_B 497 RQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKNADLIIVLRDGEIVEMGKHDEL 576 (598)
T ss_dssp HHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHHTTSEEEEESCCTTHHHHCSEEEEECSSSEEECSCHHHH
T ss_pred HHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHH
Confidence 99999999999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred HhhccCCCchHHHHHHHHHH
Q 047171 539 MQMNNGEGGAYSKMVQLQQS 558 (1224)
Q Consensus 539 ~~~~~~~~~~y~~~~~~~~~ 558 (1224)
+++ ++.|++++..|..
T Consensus 577 ~~~----~~~~~~~~~~~~~ 592 (598)
T 3qf4_B 577 IQK----RGFYYELFTSQYG 592 (598)
T ss_dssp HHT----TCHHHHHHHHHHG
T ss_pred HhC----CCHHHHHHHHHhh
Confidence 987 8999999988764
No 13
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=100.00 E-value=4.4e-82 Score=784.38 Aligned_cols=569 Identities=30% Similarity=0.463 Sum_probs=510.8
Q ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 047171 637 SSLLRLLRMSAIEWKRTLLGCLGSAGSGAIYPSYAYCLGSVVSAYFIKDDSKLKSETRLYCLIFLGLAFLTLIANLIQHY 716 (1224)
Q Consensus 637 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 716 (1224)
..+++++++.++.++.+++++++.++.+++.+..+++++.+++...... .. .......+.++++.++..++.++..+
T Consensus 11 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (582)
T 3b60_A 11 QTFRRLWPTIAPFKAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKT--DR-SVLLWMPLVVIGLMILRGITSYISSY 87 (582)
T ss_dssp HHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHSSTTST--TH-HHHHHSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC--ch-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666777777777777778888888888888888888887654211 11 11112223356667778888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047171 717 NFAIMGEHLVQRVREKMLEKIFTFEIGWFDQDENTSAAICARLANEAHLVRSFIADRMSLLIQVFFSASLAYTLSLLVTW 796 (1224)
Q Consensus 717 ~~~~~~~~~~~~lr~~~~~~ll~~~~~~fd~~~~~~g~l~~rls~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 (1224)
.....+.++..++|.+++++++++|++||+ ++++|++++|+++|++.++..+...+..++..++.+++.+++++.++|
T Consensus 88 ~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~--~~~~g~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~ 165 (582)
T 3b60_A 88 CISWVSGKVVMTMRRRLFGHMMGMPVAFFD--KQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSW 165 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCSTHHH--HSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHHC--CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 999999999999999999999999999999 678999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHccHHHHHHhccHHHHHHHHHHHhhhHHHHHHHHH
Q 047171 797 RVAIVMIAVQPLNIGCFYSRSVLMKSMSEKAKKSQSEGSQLASEATTNHRTITAFSSQDRILDLFRETMKGPKKESIKQS 876 (1224)
Q Consensus 797 ~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~ 876 (1224)
.+++++++++|+.+++.....+..++..++.++..++..+.+.|.+.|+++||+|++|+.+.++|.+..++..+...+..
T Consensus 166 ~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~ 245 (582)
T 3b60_A 166 QLSIILVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMV 245 (582)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999888888778888888888888888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Q 047171 877 WFSGIGLFSSQFLTTASITLTFWYAGRIMNQGLVSPKQLFQAFFLLMSTGKNIADAGSMTSDIAKGSSAIRTIFTILDRK 956 (1224)
Q Consensus 877 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~ 956 (1224)
....+...+..++..+..++++|+|++++..|.+++|.+++++.+......|+..+...+..+..+..+++|+.++++.+
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~ 325 (582)
T 3b60_A 246 SASSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSE 325 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSSSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred CCCCCCCCCCCCCCCCCCcccEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCce
Q 047171 957 SEIDPEDPKASEDIEEPTKGFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGS 1036 (1224)
Q Consensus 957 ~~~~~~~~~~~~~~~~~~~g~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~ 1036 (1224)
++.+.. . . ..++..+.|+++||+|+|+++ ++++|+|+||+|++||++|||||||||||||+++|+|+++|++|+
T Consensus 326 ~~~~~~-~--~--~~~~~~~~i~~~~v~~~y~~~-~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~ 399 (582)
T 3b60_A 326 QEKDEG-K--R--VIDRATGDLEFRNVTFTYPGR-EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGH 399 (582)
T ss_dssp CSCCCC-C--B--CCSCCCCCEEEEEEEECSSSS-SCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEE
T ss_pred CCccCC-C--C--CCCCCCCcEEEEEEEEEcCCC-CCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCe
Confidence 543211 0 0 112234679999999999732 256999999999999999999999999999999999999999999
Q ss_pred EEECCccCCCCCHHHHhcceEEEecCCCCCcccHHHHHccCC-CCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCC
Q 047171 1037 VMVDERNIKSYNLRKLRSCIALVSQEPTLFAGTIRQNIVYGK-EVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGV 1115 (1224)
Q Consensus 1037 I~idG~di~~~~~~~lR~~i~~V~Qdp~LF~gTIreNl~~~~-~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~ 1115 (1224)
|.+||+|+++++.+++|++++||||+|.+|++||+|||.++. +..++++++++++.+++++++.++|+||||.+|++|.
T Consensus 400 i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~ 479 (582)
T 3b60_A 400 ILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGV 479 (582)
T ss_dssp EEETTEETTTBCHHHHHHTEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSC
T ss_pred EEECCEEccccCHHHHHhhCeEEccCCcCCCCCHHHHHhccCCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCC
Confidence 999999999999999999999999999999999999999987 6678999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCEEEEe
Q 047171 1116 QLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLSTIQKADNIVVIKNGKVVEQ 1195 (1224)
Q Consensus 1116 ~LSGGQrQRlaLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~aD~I~vl~~G~Ive~ 1195 (1224)
+||||||||++||||++++|+|||||||||+||+++++.+++.|++..+|+|+|+||||+++++.||+|++|++|+++|.
T Consensus 480 ~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~ 559 (582)
T 3b60_A 480 LLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVER 559 (582)
T ss_dssp SSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTTTCSEEEEEETTEEEEE
T ss_pred CCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEEEECCEEEEe
Confidence 99999999999999999999999999999999999999999999998889999999999999999999999999999999
Q ss_pred cChhHHhhcCCCchhHHHHHHhh
Q 047171 1196 GTQSSLLSMGNGGAYYSLIKMQA 1218 (1224)
Q Consensus 1196 Gt~~eLl~~~~~g~y~~l~~~q~ 1218 (1224)
|+|+||++. ++.|+++++.|.
T Consensus 560 g~~~~l~~~--~~~~~~~~~~q~ 580 (582)
T 3b60_A 560 GTHSELLAQ--HGVYAQLHKMQF 580 (582)
T ss_dssp ECHHHHHHH--TSSHHHHHHHTC
T ss_pred cCHHHHHHc--CCHHHHHHHHhc
Confidence 999999986 789999999875
No 14
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=9.5e-81 Score=772.45 Aligned_cols=543 Identities=29% Similarity=0.393 Sum_probs=485.4
Q ss_pred chHHHHhhccchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCC-ChHHHHHH----HHH-H------HHHHHHHH
Q 047171 3 TKGGLFRYADGKDKLLLLFGTVGSIGDGMMTPLTMYILSMVINELGTS-DISISIEA----VDK-V------PEKGMCWT 70 (1224)
Q Consensus 3 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~-~~~~~~~~----~~~-~------~~~~~~~~ 70 (1224)
.++++++|.+++++ .++++++++++.+++.+..|++++.++|.+... +....... +.. . ++..++..
T Consensus 12 ~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (582)
T 3b5x_A 12 TFKRLWTYIRLYKA-GLVVSTIALVINAAADTYMISLLKPLLDEGFGNAESNFLRILPFMILGLMFVRGLSGFASSYCLS 90 (582)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677788776644 456667777888888888899999999986532 21111111 000 0 55667778
Q ss_pred HHHHHHHHHHHHHHHHHHHcCChhhhhccCCCCCHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhHH
Q 047171 71 RTAERQASRIRMEYLKSVLRQEVGFFDNQTSSSSTFQVVTNITSDAHSIQDAVAEKIPNCLAHLTSFIGSILVAFLLSWR 150 (1224)
Q Consensus 71 ~~~~~~~~~lR~~~~~~l~~~~~~~f~~~~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (1224)
+.+.++..++|.++|+|++++|++||++ . ++|++++|+++|++.+++++...+..++.++++++++++++++++|+
T Consensus 91 ~~~~~~~~~lr~~l~~~ll~~~~~~~~~---~-~~g~l~~rl~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~ 166 (582)
T 3b5x_A 91 WVSGNVVMQMRRRLFNHFMHMPVRFFDQ---E-STGGLLSRITYDSEQVAGATSRALVSIVREGASIIGLLTLMFWNSWQ 166 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHCC---C-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 8999999999999999999999999998 5 99999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHH
Q 047171 151 LALAALPFSLLFIVPGIVFGKVLKDLGAQGKDAYEAAGGIAEQAISSIRTVYSFVGEHQTLKRFSLALRKNMELGIKQGL 230 (1224)
Q Consensus 151 l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~vk~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 230 (1224)
+++++++++|+++++..++.++.++..++.++..+++++.+.|.++|+++||+|++|+.+.++|.+..++..+...+..+
T Consensus 167 l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 246 (582)
T 3b5x_A 167 LSLVLIVVAPVVAFAISFVSKRFRKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTMKLVS 246 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999889999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 047171 231 TKGLLLGSM-GMTYGAWAFQSWVGSVLVTERGEKGGLVFVAGICTILGGVGIMSALPNLSFISQATTAATRIFEMIDRVP 309 (1224)
Q Consensus 231 ~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~ 309 (1224)
..++..++. ++..+..++++++|++++.+|.+++|.+++++.++.....|+..+...+..++++.++++|++++++.++
T Consensus 247 ~~~~~~~~~~~~~~~~~~~i~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~ 326 (582)
T 3b5x_A 247 AQSIADPVIQMIASLALFAVLFLASVDSIRAELTPGTFTVVFSAMFGLMRPLKALTSVTSEFQRGMAACQTLFGLMDLET 326 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 888887777 6777777888999999999999999999999999999999999999999999999999999999998766
Q ss_pred CCCCCcccccccccccccEEEEeEEEECCC--C----------CCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEC
Q 047171 310 VINSEDEIGKTLAYLRGEIEFKDVDFSYPT--R----------PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLD 377 (1224)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~--~----------~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~ 377 (1224)
+.++. ..+.+...+.|+++||+|+|++ . ++|+++|||||||||||||+++|+|+|+|++|+|.+|
T Consensus 327 ~~~~~---~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~ 403 (582)
T 3b5x_A 327 ERDNG---KYEAERVNGEVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLD 403 (582)
T ss_pred cCCCC---CCCCCCCCCeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEEC
Confidence 53221 1111223467999999999974 2 2567999999999999999999999999999999999
Q ss_pred CEecCCCCHHHHhcccEEecCCCCCCcccHHHHHhcCC-CCCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCCh
Q 047171 378 GHKIKKLQLKWLRSQMGLVNQEPILFSTSIKENILIGK-PGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSG 456 (1224)
Q Consensus 378 g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~g~-~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSg 456 (1224)
|+|+++++.+++|++||||+|+|++|++||+|||.+|. ++.++++++++++.++++++++++|+|+||.+|++|.+|||
T Consensus 404 g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSg 483 (582)
T 3b5x_A 404 GHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSG 483 (582)
T ss_pred CEEhhhCCHHHHhcCeEEEcCCCccccccHHHHHhccCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCH
Confidence 99999999999999999999999999999999999997 67788999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCCcchhhccCEEEEEeCceEEeecChH
Q 047171 457 GQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQASQGRTMIIIAHRLSTIRKADLIGVLQSGRVIESGSHD 536 (1224)
Q Consensus 457 Gq~qriaiARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~i~H~l~~~~~ad~i~vl~~G~i~~~g~~~ 536 (1224)
|||||++||||++++|+|||||||||+||+++++.+.+.++++.+|+|+|+||||+++++.||+|++|++|++++.|+|+
T Consensus 484 Gq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~ 563 (582)
T 3b5x_A 484 GQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIEQADEILVVDEGEIIERGRHA 563 (582)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHH
Confidence 99999999999999999999999999999999999999999988899999999999999999999999999999999999
Q ss_pred HHHhhccCCCchHHHHHHHHH
Q 047171 537 VLMQMNNGEGGAYSKMVQLQQ 557 (1224)
Q Consensus 537 ~l~~~~~~~~~~y~~~~~~~~ 557 (1224)
|+++. ++.|+++++.|.
T Consensus 564 ~l~~~----~~~~~~~~~~q~ 580 (582)
T 3b5x_A 564 DLLAQ----DGAYAQLHRIQF 580 (582)
T ss_pred HHHhC----CcHHHHHHHHhh
Confidence 99987 789999998763
No 15
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=100.00 E-value=1.3e-80 Score=771.14 Aligned_cols=543 Identities=30% Similarity=0.428 Sum_probs=485.6
Q ss_pred cchHHHHhhccchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCC-ChHHHHHH----HHH-------HHHHHHHH
Q 047171 2 GTKGGLFRYADGKDKLLLLFGTVGSIGDGMMTPLTMYILSMVINELGTS-DISISIEA----VDK-------VPEKGMCW 69 (1224)
Q Consensus 2 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~-~~~~~~~~----~~~-------~~~~~~~~ 69 (1224)
+.++++++|.+++++ .++++++++++.+++.+..|++++.++|.+... +....... +.. .++..++.
T Consensus 11 ~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (582)
T 3b60_A 11 QTFRRLWPTIAPFKA-GLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTDRSVLLWMPLVVIGLMILRGITSYISSYCI 89 (582)
T ss_dssp HHHHHHHHHHGGGHH-HHHHHHHHHHHHHHHHHHHHHHHTHHHHSSTTSTTHHHHHHSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346678888877644 456667777888888888899999999976432 22111110 000 05566777
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCChhhhhccCCCCCHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhH
Q 047171 70 TRTAERQASRIRMEYLKSVLRQEVGFFDNQTSSSSTFQVVTNITSDAHSIQDAVAEKIPNCLAHLTSFIGSILVAFLLSW 149 (1224)
Q Consensus 70 ~~~~~~~~~~lR~~~~~~l~~~~~~~f~~~~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (1224)
.+.+.++..++|.++|+|++++|++||++ . ++|++++|+++|++.+++++...+..++.++++++++++++++++|
T Consensus 90 ~~~~~~~~~~lr~~l~~~l~~~~~~~~~~---~-~~g~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~ 165 (582)
T 3b60_A 90 SWVSGKVVMTMRRRLFGHMMGMPVAFFDK---Q-STGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSW 165 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCSTHHHH---S-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHCC---C-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 88899999999999999999999999998 5 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH
Q 047171 150 RLALAALPFSLLFIVPGIVFGKVLKDLGAQGKDAYEAAGGIAEQAISSIRTVYSFVGEHQTLKRFSLALRKNMELGIKQG 229 (1224)
Q Consensus 150 ~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~vk~~~~e~~~~~~~~~~~~~~~~~~~~~~ 229 (1224)
++++++++++|+++++..++.++.++..++.++..+++++.+.|.++|+++||+|++|+.+.++|.+..++..+...+..
T Consensus 166 ~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~ 245 (582)
T 3b60_A 166 QLSIILVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMV 245 (582)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 047171 230 LTKGLLLGSM-GMTYGAWAFQSWVGSVLVTERGEKGGLVFVAGICTILGGVGIMSALPNLSFISQATTAATRIFEMIDRV 308 (1224)
Q Consensus 230 ~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~ 308 (1224)
+..++..++. ++..+..++++++|++++..|.+++|.+++++.++.....|+..+...+..++++..+++|++++++.+
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~ 325 (582)
T 3b60_A 246 SASSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSE 325 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSSSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 8888888777 667777778899999999999999999999999999999999999999999999999999999999876
Q ss_pred CCCCCCcccccccccccccEEEEeEEEECCC--C----------CCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEE
Q 047171 309 PVINSEDEIGKTLAYLRGEIEFKDVDFSYPT--R----------PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILL 376 (1224)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~--~----------~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~ 376 (1224)
++.++. ..+.+...+.|+++||+|+|++ . ++|+++|||||||||||||+++|+|+++|++|+|.+
T Consensus 326 ~~~~~~---~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~ 402 (582)
T 3b60_A 326 QEKDEG---KRVIDRATGDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILM 402 (582)
T ss_dssp CSCCCC---CBCCSCCCCCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEE
T ss_pred CCccCC---CCCCCCCCCcEEEEEEEEEcCCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEE
Confidence 653321 1112223467999999999973 2 256799999999999999999999999999999999
Q ss_pred CCEecCCCCHHHHhcccEEecCCCCCCcccHHHHHhcCC-CCCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCC
Q 047171 377 DGHKIKKLQLKWLRSQMGLVNQEPILFSTSIKENILIGK-PGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLS 455 (1224)
Q Consensus 377 ~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~g~-~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LS 455 (1224)
||+|+++++.+++|++||||+|+|++|++||+|||.+|. ++.++++++++++.++++++++++|+|+||.+|++|.+||
T Consensus 403 ~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LS 482 (582)
T 3b60_A 403 DGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLS 482 (582)
T ss_dssp TTEETTTBCHHHHHHTEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSC
T ss_pred CCEEccccCHHHHHhhCeEEccCCcCCCCCHHHHHhccCCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCC
Confidence 999999999999999999999999999999999999997 6778899999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCCcchhhccCEEEEEeCceEEeecCh
Q 047171 456 GGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQASQGRTMIIIAHRLSTIRKADLIGVLQSGRVIESGSH 535 (1224)
Q Consensus 456 gGq~qriaiARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~i~H~l~~~~~ad~i~vl~~G~i~~~g~~ 535 (1224)
||||||++||||++++|+|||||||||+||+++++.+.+.++++.+|+|+|+||||+++++.||+|++|++|++++.|+|
T Consensus 483 gGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~ 562 (582)
T 3b60_A 483 GGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTH 562 (582)
T ss_dssp HHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTTTCSEEEEEETTEEEEEECH
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEEEECCEEEEecCH
Confidence 99999999999999999999999999999999999999999998889999999999999999999999999999999999
Q ss_pred HHHHhhccCCCchHHHHHHHH
Q 047171 536 DVLMQMNNGEGGAYSKMVQLQ 556 (1224)
Q Consensus 536 ~~l~~~~~~~~~~y~~~~~~~ 556 (1224)
+|+++. ++.|+++++.|
T Consensus 563 ~~l~~~----~~~~~~~~~~q 579 (582)
T 3b60_A 563 SELLAQ----HGVYAQLHKMQ 579 (582)
T ss_dssp HHHHHH----TSSHHHHHHHT
T ss_pred HHHHHc----CCHHHHHHHHh
Confidence 999987 78899998765
No 16
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=3.1e-80 Score=769.81 Aligned_cols=547 Identities=34% Similarity=0.482 Sum_probs=470.9
Q ss_pred chHHHHhhccchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCC---h-HHHHHH----HH-H------HHHHHH
Q 047171 3 TKGGLFRYADGKDKLLLLFGTVGSIGDGMMTPLTMYILSMVINELGTSD---I-SISIEA----VD-K------VPEKGM 67 (1224)
Q Consensus 3 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~---~-~~~~~~----~~-~------~~~~~~ 67 (1224)
.+++++++.+++++ .++++++++++.+++.++.|++++.++|.+.... . ..+... +. . .++..+
T Consensus 6 ~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (595)
T 2yl4_A 6 EARKLLGLAYPERR-RLAAAVGFLTMSSVISMSAPFFLGKIIDVIYTNPTVDYSDNLTRLCLGLSAVFLCGAAANAIRVY 84 (595)
T ss_dssp HHHHHHHHHGGGHH-HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHCTTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677888877644 4556677777777888888899999999764221 1 111110 00 0 045667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCChhhhhccCCCCCHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 047171 68 CWTRTAERQASRIRMEYLKSVLRQEVGFFDNQTSSSSTFQVVTNITSDAHSIQDAVAEKIPNCLAHLTSFIGSILVAFLL 147 (1224)
Q Consensus 68 ~~~~~~~~~~~~lR~~~~~~l~~~~~~~f~~~~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (1224)
+..+.+.++..++|.++|+|++++|++||++ . ++|++++|+++|++.+++.+...+..++.+++++++++++++++
T Consensus 85 ~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~---~-~~g~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~ 160 (595)
T 2yl4_A 85 LMQTSGQRIVNRLRTSLFSSILRQEVAFFDK---T-RTGELINRLSSDTALLGRSVTENLSDGLRAGAQASVGISMMFFV 160 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCHHHHHH---S-CHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHHCC---C-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788899999999999999999999999998 5 99999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Q 047171 148 SWRLALAALPFSLLFIVPGIVFGKVLKDLGAQGKDAYEAAGGIAEQAISSIRTVYSFVGEHQTLKRFSLALRKNMELGIK 227 (1224)
Q Consensus 148 ~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~vk~~~~e~~~~~~~~~~~~~~~~~~~~ 227 (1224)
+|++++++++++|+++++..++.++.++..++.++..++.++.+.|.++|+++||+|++|+.+.++|.+..++..+...+
T Consensus 161 ~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~ 240 (595)
T 2yl4_A 161 SPNLATFVLSVVPPVSIIAVIYGRYLRKLTKVTQDSLAQATQLAEERIGNVRTVRAFGKEMTEIEKYASKVDHVMQLARK 240 (595)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCccHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 047171 228 QGLTKGLLLGSM-GMTYGAWAFQSWVGSVLVTERGEKGGLVFVAGICTILGGVGIMSALPNLSFISQATTAATRIFEMID 306 (1224)
Q Consensus 228 ~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~ 306 (1224)
..+..++..+.. ++..+..++++|+|++++.+|.+++|.+++++.+......|+..+...+..++++.++++|++++++
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~ 320 (595)
T 2yl4_A 241 EAFARAGFFGATGLSGNLIVLSVLYKGGLLMGSAHMTVGELSSFLMYAFWVGISIGGLSSFYSELMKGLGAGGRLWELLE 320 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 888888877766 6666777788999999999999999999999999999999999999999999999999999999998
Q ss_pred cCCCCCCCccccccccccccc-EEEEeEEEECCCC-------------CCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCc
Q 047171 307 RVPVINSEDEIGKTLAYLRGE-IEFKDVDFSYPTR-------------PDTPTIGLVGSSGSGKSTVISLLERFYDPVKG 372 (1224)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~-i~~~~v~f~y~~~-------------~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G 372 (1224)
.+++.++.. .....+...++ |+++||+|+|+++ ++|+++|||||||||||||+++|+|+++|++|
T Consensus 321 ~~~~~~~~~-~~~~~~~~~~~~i~~~~v~~~y~~~~~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G 399 (595)
T 2yl4_A 321 REPKLPFNE-GVILNEKSFQGALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASG 399 (595)
T ss_dssp CCCSSCSSC-SBCCCTTTCCCCEEEEEEEEECSSCTTSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCSEE
T ss_pred CCCccCCCC-CCCCCcCCCCCeEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCc
Confidence 766543221 11111223567 9999999999742 25679999999999999999999999999999
Q ss_pred EEEECCEecCCCCHHHHhcccEEecCCCCCCcccHHHHHhcCCCC---CCHHHHHHHHHHhcHHHHHHhccccccccccC
Q 047171 373 NILLDGHKIKKLQLKWLRSQMGLVNQEPILFSTSIKENILIGKPG---ASMETVVKAAQAANVHDFIMKLNDGYETKVGQ 449 (1224)
Q Consensus 373 ~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~g~~~---~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~ 449 (1224)
+|.+||+|+++++.+++|++||||+|+|++|++||+|||.+|.+. .++++++++++.++++++++++|+|+||.+|+
T Consensus 400 ~i~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~ 479 (595)
T 2yl4_A 400 TISLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGE 479 (595)
T ss_dssp EEEETTEETTTBCHHHHHHSEEEECSSCCCCSSBHHHHHHTTSSSTTTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSS
T ss_pred EEEECCEEhhhCCHHHHHhceEEEccCCcccCCCHHHHHhhcCCCccccCHHHHHHHHHHcCCHHHHHhCcccccccccC
Confidence 999999999999999999999999999999999999999999775 67889999999999999999999999999999
Q ss_pred CCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCCcchhhccCEEEEEeCceE
Q 047171 450 FGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQASQGRTMIIIAHRLSTIRKADLIGVLQSGRV 529 (1224)
Q Consensus 450 ~g~~LSgGq~qriaiARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~i~H~l~~~~~ad~i~vl~~G~i 529 (1224)
+|.+|||||||||+|||||+++|+|||||||||+||+++++.+.+.++++.+|+|+|+||||+++++.||+|++|++|++
T Consensus 480 ~~~~LSgGq~qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i 559 (595)
T 2yl4_A 480 KGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHRLSTIKNANMVAVLDQGKI 559 (595)
T ss_dssp SSCCCCHHHHHHHHHHHHHHHCCSEEEEECCCSSCCHHHHHHHHHHHHHHHTTSEEEEECCCHHHHHHSSEEEEEETTEE
T ss_pred CCCcCCHHHHHHHHHHHHHHcCCCEEEEECcccCCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHcCCEEEEEECCEE
Confidence 99999999999999999999999999999999999999999999999998789999999999999999999999999999
Q ss_pred EeecChHHHHhhccCCCchHHHHHHHHHH
Q 047171 530 IESGSHDVLMQMNNGEGGAYSKMVQLQQS 558 (1224)
Q Consensus 530 ~~~g~~~~l~~~~~~~~~~y~~~~~~~~~ 558 (1224)
++.|+|+|+++.. ++.|+++++.|..
T Consensus 560 ~~~g~~~~l~~~~---~~~~~~~~~~q~~ 585 (595)
T 2yl4_A 560 TEYGKHEELLSKP---NGIYRKLMNKQSF 585 (595)
T ss_dssp EEEECSCC---------C-----------
T ss_pred EEECCHHHHHhCC---ChHHHHHHHHhhc
Confidence 9999999998732 6789998887643
No 17
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=3.3e-64 Score=566.75 Aligned_cols=278 Identities=42% Similarity=0.653 Sum_probs=251.9
Q ss_pred HHHHHHHHHHHHHHHHHHHccCCCCCCCCCCCCCCCCCCCcccEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcC
Q 047171 935 MTSDIAKGSSAIRTIFTILDRKSEIDPEDPKASEDIEEPTKGFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQ 1014 (1224)
Q Consensus 935 ~~~~~~~~~~a~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~g~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~ 1014 (1224)
...+++.+..+++|++++++.+++........ ..++..+.|+|+||+|+|++ +.++|+||||+|++||++|||||
T Consensus 14 ~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~---~~~~~~~~i~~~~vs~~y~~--~~~vL~~isl~i~~Ge~vaivG~ 88 (306)
T 3nh6_A 14 LVPRGSHMFIDMENMFDLLKEETEVKDLPGAG---PLRFQKGRIEFENVHFSYAD--GRETLQDVSFTVMPGQTLALVGP 88 (306)
T ss_dssp -----CCTTCCHHHHHHHHHHHHSCCCCTTCB---CCCCSSCCEEEEEEEEESST--TCEEEEEEEEEECTTCEEEEESS
T ss_pred cchhHHHHHHHHHHHHHHHhCCcccccccccc---ccCCCCCeEEEEEEEEEcCC--CCceeeeeeEEEcCCCEEEEECC
Confidence 34567778889999999998765533211111 11234578999999999963 35699999999999999999999
Q ss_pred CCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcceEEEecCCCCCcccHHHHHccCCCCCCHHHHHHHHHHHh
Q 047171 1015 SGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIALVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVLAN 1094 (1224)
Q Consensus 1015 SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qdp~LF~gTIreNl~~~~~~~~deei~~al~~a~ 1094 (1224)
||||||||+++|+|+|+|++|+|.+||.|+++++.+.+|++|+||||+|.+|++||+|||.++.+..++++++++++.++
T Consensus 89 sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~eNi~~~~~~~~~~~~~~~~~~~~ 168 (306)
T 3nh6_A 89 SGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAG 168 (306)
T ss_dssp SCHHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEEEECSSCCCCSEEHHHHHHTTSTTCCHHHHHHHHHHHT
T ss_pred CCchHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceEEEecCCccCcccHHHHHHhhcccCCHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999988888999999999999
Q ss_pred HHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccC
Q 047171 1095 AHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHR 1174 (1224)
Q Consensus 1095 l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHr 1174 (1224)
+++++..+|+||+|.+|++|.+|||||||||||||||+++|+|||||||||+||+++++.|++.|+++.+++|+|+||||
T Consensus 169 l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~ 248 (306)
T 3nh6_A 169 IHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHR 248 (306)
T ss_dssp CHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHTTSEEEEECCS
T ss_pred cHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEEcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999998889999999999
Q ss_pred chhhhhcCEEEEEeCCEEEEecChhHHhhcCCCchhHHHHHHhhc
Q 047171 1175 LSTIQKADNIVVIKNGKVVEQGTQSSLLSMGNGGAYYSLIKMQAS 1219 (1224)
Q Consensus 1175 l~ti~~aD~I~vl~~G~Ive~Gt~~eLl~~~~~g~y~~l~~~q~~ 1219 (1224)
++++..||+|+||++|+|+++|+|++|++. +|.|++||+.|..
T Consensus 249 l~~~~~aD~i~vl~~G~iv~~G~~~el~~~--~~~y~~l~~~q~~ 291 (306)
T 3nh6_A 249 LSTVVNADQILVIKDGCIVERGRHEALLSR--GGVYADMWQLQQG 291 (306)
T ss_dssp HHHHHTCSEEEEEETTEEEEEECHHHHHHH--TSHHHHHHHHHHC
T ss_pred hHHHHcCCEEEEEECCEEEEECCHHHHHhc--ChHHHHHHHHHHh
Confidence 999999999999999999999999999986 8999999998864
No 18
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=4.2e-63 Score=608.94 Aligned_cols=199 Identities=23% Similarity=0.326 Sum_probs=166.4
Q ss_pred cEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcce
Q 047171 977 FIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCI 1056 (1224)
Q Consensus 977 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i 1056 (1224)
.++++|++++|.+ ..|+++||+|++||++||+||||||||||+++|.|+++|++|+|.+ +.++
T Consensus 357 ~l~~~~l~~~~~~----~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~-------------~~~i 419 (607)
T 3bk7_A 357 LVEYPRLVKDYGS----FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEW-------------DLTV 419 (607)
T ss_dssp EEEECCEEEECSS----CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCC-------------CCCE
T ss_pred EEEEeceEEEecc----eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE-------------eeEE
Confidence 5899999999952 3699999999999999999999999999999999999999999986 2469
Q ss_pred EEEecCCCC-CcccHHHHHccC-CCC-CCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHcc
Q 047171 1057 ALVSQEPTL-FAGTIRQNIVYG-KEV-ATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLK 1133 (1224)
Q Consensus 1057 ~~V~Qdp~L-F~gTIreNl~~~-~~~-~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll~ 1133 (1224)
+|+||++.+ ++.|++||+... ... ...+.+.++++.. |++........+||||||||++|||||++
T Consensus 420 ~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LSGGe~QRv~iAraL~~ 488 (607)
T 3bk7_A 420 AYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPL-----------GIIDLYDRNVEDLSGGELQRVAIAATLLR 488 (607)
T ss_dssp EEECSSCCCCCSSBHHHHHHHHHHHHHHCHHHHHHTHHHH-----------TCTTTTTSBGGGCCHHHHHHHHHHHHHTS
T ss_pred EEEecCccCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHc-----------CCchHhcCChhhCCHHHHHHHHHHHHHHh
Confidence 999999875 578999998653 111 1122333333333 33333344456799999999999999999
Q ss_pred CCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCCeEEEEccCchhhhh-cCEEEEEeC--CEEEEecChhHHhh
Q 047171 1134 NPMILLLDEATSALDSASENLVQEALEKMM--VGRTCVVVAHRLSTIQK-ADNIVVIKN--GKVVEQGTQSSLLS 1203 (1224)
Q Consensus 1134 ~p~ILlLDEaTSaLD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~~-aD~I~vl~~--G~Ive~Gt~~eLl~ 1203 (1224)
+|+||||||||++||+.+...+.+.|+++. .++|+|+|||+++.+.. ||||++|++ |++++.|+|++++.
T Consensus 489 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~adrv~vl~~~~g~~~~~g~p~~~~~ 563 (607)
T 3bk7_A 489 DADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEPGRHGRALPPMGMRE 563 (607)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcCCcceEEecCCHHHHHh
Confidence 999999999999999999999999999874 48999999999999876 999999986 88889999998875
No 19
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=3.3e-63 Score=604.85 Aligned_cols=199 Identities=23% Similarity=0.328 Sum_probs=165.7
Q ss_pred cEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcce
Q 047171 977 FIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCI 1056 (1224)
Q Consensus 977 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i 1056 (1224)
.++++|++++|.+ ..|+++||+|++||++||+||||||||||+++|+|+++|++|+|.+ +.++
T Consensus 287 ~l~~~~l~~~~~~----~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~-------------~~~i 349 (538)
T 1yqt_A 287 LVTYPRLVKDYGS----FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEW-------------DLTV 349 (538)
T ss_dssp EEEECCEEEEETT----EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCC-------------CCCE
T ss_pred EEEEeeEEEEECC----EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE-------------CceE
Confidence 5899999999952 3699999999999999999999999999999999999999999986 2369
Q ss_pred EEEecCCCC-CcccHHHHHccC-CCC-CCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHcc
Q 047171 1057 ALVSQEPTL-FAGTIRQNIVYG-KEV-ATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLK 1133 (1224)
Q Consensus 1057 ~~V~Qdp~L-F~gTIreNl~~~-~~~-~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll~ 1133 (1224)
+||||++.. ++.|+.||+... .+. ...+.+.+++ ..+ |+.........+||||||||++|||||++
T Consensus 350 ~~v~Q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l---------~~~--~l~~~~~~~~~~LSGGe~qrv~lAraL~~ 418 (538)
T 1yqt_A 350 AYKPQYIKADYEGTVYELLSKIDASKLNSNFYKTELL---------KPL--GIIDLYDREVNELSGGELQRVAIAATLLR 418 (538)
T ss_dssp EEECSSCCCCCSSBHHHHHHHHHHHHHTCHHHHHHTT---------TTT--TCGGGTTSBGGGCCHHHHHHHHHHHHHTS
T ss_pred EEEecCCcCCCCCcHHHHHHhhhccCCCHHHHHHHHH---------HHc--CChhhhcCChhhCCHHHHHHHHHHHHHHh
Confidence 999999976 578999998643 111 1122222222 222 34334445566899999999999999999
Q ss_pred CCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCCeEEEEccCchhhhh-cCEEEEEeC--CEEEEecChhHHhh
Q 047171 1134 NPMILLLDEATSALDSASENLVQEALEKMM--VGRTCVVVAHRLSTIQK-ADNIVVIKN--GKVVEQGTQSSLLS 1203 (1224)
Q Consensus 1134 ~p~ILlLDEaTSaLD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~~-aD~I~vl~~--G~Ive~Gt~~eLl~ 1203 (1224)
+|++|||||||++||+.+.+.|.+.|+++. .|+|+|+|||+++.+.. ||||++|++ |++++.|++++++.
T Consensus 419 ~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~~~~~~drv~vl~~~~~~~~~~g~~~~~~~ 493 (538)
T 1yqt_A 419 DADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVFEGEPGKYGRALPPMGMRE 493 (538)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceEeecCCHHHHHh
Confidence 999999999999999999999999999875 38999999999999876 999999986 88889999988875
No 20
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=6.6e-62 Score=614.05 Aligned_cols=186 Identities=24% Similarity=0.373 Sum_probs=145.4
Q ss_pred cEEEEeEEEECCCC----------CCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcccEEe
Q 047171 327 EIEFKDVDFSYPTR----------PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLV 396 (1224)
Q Consensus 327 ~i~~~~v~f~y~~~----------~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v 396 (1224)
.+...|++++|++. ++|++++|+||||||||||+++|+| |+| +|.+... +.+++|+
T Consensus 435 ~L~~~~ls~~yg~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag------G~i--~g~~~~~------~~~~~~v 500 (986)
T 2iw3_A 435 DLCNCEFSLAYGAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN------GQV--DGFPTQE------ECRTVYV 500 (986)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH------TCS--TTCCCTT------TSCEEET
T ss_pred eeEEeeEEEEECCEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC------CCc--CCCcccc------ceeEEEE
Confidence 46777888888642 3577999999999999999999995 544 5544321 1247899
Q ss_pred cCCC-CCC-cccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhcccccc-ccccCCCCCCChHHHHHHHHHHHhccCCC
Q 047171 397 NQEP-ILF-STSIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYE-TKVGQFGVQLSGGQKQRIAIARALIRDPK 473 (1224)
Q Consensus 397 ~Q~~-~lf-~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~-t~~~~~g~~LSgGq~qriaiARal~~~~~ 473 (1224)
+|++ .++ ..|+.||+.+..... .+++.+.++ .+ |++ ........+||||||||++|||||+.+|+
T Consensus 501 ~q~~~~~~~~ltv~e~l~~~~~~~-~~~v~~~L~---------~l--gL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~ 568 (986)
T 2iw3_A 501 EHDIDGTHSDTSVLDFVFESGVGT-KEAIKDKLI---------EF--GFTDEMIAMPISALSGGWKMKLALARAVLRNAD 568 (986)
T ss_dssp TCCCCCCCTTSBHHHHHHTTCSSC-HHHHHHHHH---------HT--TCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCS
T ss_pred cccccccccCCcHHHHHHHhhcCH-HHHHHHHHH---------Hc--CCChhhhcCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 9986 444 459999998621111 333433333 33 442 23455667899999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCCcchhhc-cCEEEEEeCceEE-eecChHHHHh
Q 047171 474 ILLLDEATSALDAESERIVQEALDQASQGRTMIIIAHRLSTIRK-ADLIGVLQSGRVI-ESGSHDVLMQ 540 (1224)
Q Consensus 474 ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~i~H~l~~~~~-ad~i~vl~~G~i~-~~g~~~~l~~ 540 (1224)
||||||||++||+.+.+.+.+.|++ .|+|+|+|||+++.+.. ||+|++|++|+++ ..|+++++.+
T Consensus 569 lLLLDEPTs~LD~~~~~~l~~~L~~--~g~tvIivSHdl~~l~~~adrii~L~~G~iv~~~G~~~e~~~ 635 (986)
T 2iw3_A 569 ILLLDEPTNHLDTVNVAWLVNYLNT--CGITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEFVK 635 (986)
T ss_dssp EEEEESTTTTCCHHHHHHHHHHHHH--SCSEEEEECSCHHHHHHHCSEEEEEETTEEEEEESCHHHHHH
T ss_pred EEEEECCccCCCHHHHHHHHHHHHh--CCCEEEEEECCHHHHHHhCCEEEEEECCeeecCCCCHHHHHh
Confidence 9999999999999999999999988 68999999999999976 9999999999997 5899888764
No 21
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=100.00 E-value=5.8e-63 Score=600.28 Aligned_cols=199 Identities=20% Similarity=0.267 Sum_probs=165.2
Q ss_pred cEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcce
Q 047171 977 FIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCI 1056 (1224)
Q Consensus 977 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i 1056 (1224)
.++++|++++|.+ ..|++.||+|++||++||+||||||||||+++|+|+++|++|+|.++|. .+
T Consensus 269 ~l~~~~l~~~~~~----~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------~i 332 (538)
T 3ozx_A 269 KMKWTKIIKKLGD----FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQ------------IL 332 (538)
T ss_dssp EEEECCEEEEETT----EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCC------------CE
T ss_pred eEEEcceEEEECC----EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCe------------ee
Confidence 5899999999953 3688899999999999999999999999999999999999999998764 58
Q ss_pred EEEecCCCC-CcccHHHHHccCCCCC---CHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHc
Q 047171 1057 ALVSQEPTL-FAGTIRQNIVYGKEVA---TEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVL 1132 (1224)
Q Consensus 1057 ~~V~Qdp~L-F~gTIreNl~~~~~~~---~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll 1132 (1224)
+|+||++.. +..|+++|+....... ..+.+.++++..+ ++........+||||||||++|||||+
T Consensus 333 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~LSGGq~QRv~iAraL~ 401 (538)
T 3ozx_A 333 SYKPQRIFPNYDGTVQQYLENASKDALSTSSWFFEEVTKRLN-----------LHRLLESNVNDLSGGELQKLYIAATLA 401 (538)
T ss_dssp EEECSSCCCCCSSBHHHHHHHHCSSTTCTTSHHHHHTTTTTT-----------GGGCTTSBGGGCCHHHHHHHHHHHHHH
T ss_pred EeechhcccccCCCHHHHHHHhhhhccchhHHHHHHHHHHcC-----------CHHHhcCChhhCCHHHHHHHHHHHHHH
Confidence 999999864 5789999997642211 1222333333333 333344555689999999999999999
Q ss_pred cCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCCeEEEEccCchhhhh-cCEEEEEeC--CEEEEecChhHHh
Q 047171 1133 KNPMILLLDEATSALDSASENLVQEALEKMM--VGRTCVVVAHRLSTIQK-ADNIVVIKN--GKVVEQGTQSSLL 1202 (1224)
Q Consensus 1133 ~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~~-aD~I~vl~~--G~Ive~Gt~~eLl 1202 (1224)
++|+||||||||++||+.+...+.+.|+++. .++|+|+|||+++.+.. ||||+||++ |.+...|++.++.
T Consensus 402 ~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~~~~aDri~vl~~~~~~~~~~~~~~~~~ 476 (538)
T 3ozx_A 402 KEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVFKGEPEKAGLATSPVTLK 476 (538)
T ss_dssp SCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHH
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceeccCCChHHHH
Confidence 9999999999999999999999999999875 48899999999999976 999999986 6677778876654
No 22
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=100.00 E-value=5.1e-61 Score=605.85 Aligned_cols=202 Identities=23% Similarity=0.363 Sum_probs=132.6
Q ss_pred EEeEEEECCCCCCCCEEEEEcCCCCcHHHHH---------------------HHHhcCCCCC-------CcEEEECCEec
Q 047171 330 FKDVDFSYPTRPDTPTIGLVGSSGSGKSTVI---------------------SLLERFYDPV-------KGNILLDGHKI 381 (1224)
Q Consensus 330 ~~~v~f~y~~~~~~~~~~ivG~sGsGKSTl~---------------------~ll~~~~~~~-------~G~i~~~g~~~ 381 (1224)
++||||+.+ +++++||+||||||||||+ +++.|+..|+ .|.|.++|.+.
T Consensus 34 L~~vsl~i~---~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~~ 110 (670)
T 3ux8_A 34 LKNIDVEIP---RGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKTT 110 (670)
T ss_dssp CCSEEEEEE---TTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC-
T ss_pred eeccEEEEC---CCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCchh
Confidence 678888864 5779999999999999998 8899999998 45556666554
Q ss_pred CCCCHHHHhcccEEecCCCCCC--------------------cccHHHHHhcCCC-CCC--HHHHHHH-H-HHhcHHHHH
Q 047171 382 KKLQLKWLRSQMGLVNQEPILF--------------------STSIKENILIGKP-GAS--METVVKA-A-QAANVHDFI 436 (1224)
Q Consensus 382 ~~~~~~~~r~~i~~v~Q~~~lf--------------------~~ti~~ni~~g~~-~~~--~~~~~~~-~-~~~~~~~~i 436 (1224)
.. ..++.+|+|+|.+.++ ..|++||+.+... ... ..+..+. . +.....+.+
T Consensus 111 ~~----~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 186 (670)
T 3ux8_A 111 SR----NPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRLGFL 186 (670)
T ss_dssp --------CCBHHHHTTCC-------------------------CC--------------------------CHHHHHHH
T ss_pred hc----cchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHH
Confidence 32 2245677777765432 3489999987421 101 0111110 0 000111234
Q ss_pred Hhcccccccc-ccCCCCCCChHHHHHHHHHHHhccCCC--EEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEeCCc
Q 047171 437 MKLNDGYETK-VGQFGVQLSGGQKQRIAIARALIRDPK--ILLLDEATSALDAESERIVQEALDQAS-QGRTMIIIAHRL 512 (1224)
Q Consensus 437 ~~l~~g~~t~-~~~~g~~LSgGq~qriaiARal~~~~~--ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~i~H~l 512 (1224)
+.+ |++.. ......+|||||||||+|||||+.+|+ +||||||||+||+.+...+.+.|+++. +|.|+|+|||++
T Consensus 187 ~~~--gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd~ 264 (670)
T 3ux8_A 187 QNV--GLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDE 264 (670)
T ss_dssp HHT--TCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCCH
T ss_pred HHc--CCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 444 44432 456778999999999999999999998 999999999999999999999998764 589999999999
Q ss_pred chhhccCEEEEE------eCceEEeecChHHHHh
Q 047171 513 STIRKADLIGVL------QSGRVIESGSHDVLMQ 540 (1224)
Q Consensus 513 ~~~~~ad~i~vl------~~G~i~~~g~~~~l~~ 540 (1224)
+.+..||+|++| ++|++++.|+++++.+
T Consensus 265 ~~~~~~d~ii~l~~g~~~~~G~i~~~g~~~~~~~ 298 (670)
T 3ux8_A 265 DTMLAADYLIDIGPGAGIHGGEVVAAGTPEEVMN 298 (670)
T ss_dssp HHHHHCSEEEEECSSSGGGCCSEEEEECHHHHHT
T ss_pred HHHhhCCEEEEecccccccCCEEEEecCHHHHhc
Confidence 998889999999 8999999999988754
No 23
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3e-60 Score=581.95 Aligned_cols=198 Identities=25% Similarity=0.382 Sum_probs=162.2
Q ss_pred EEEEEECCCCCCccceeceeEEEeCC-----cEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcc
Q 047171 981 KNVFFSYPSRPDQMIFKGLTLKIEAG-----KTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSC 1055 (1224)
Q Consensus 981 ~~vsf~Y~~~~~~~vL~~isl~I~~G-----e~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~ 1055 (1224)
++++|+|+.. ..+++|+||++++| |++||+||||||||||+++|.|+.+|++|+. +. +..
T Consensus 350 ~~~~~~y~~~--~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~------~~-------~~~ 414 (608)
T 3j16_B 350 ASRAFSYPSL--KKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQD------IP-------KLN 414 (608)
T ss_dssp SSSCCEECCE--EEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCC------CC-------SCC
T ss_pred cceeEEecCc--ccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcC------cc-------CCc
Confidence 4567788632 35799999999999 8899999999999999999999999999972 21 346
Q ss_pred eEEEecCCC-CCcccHHHHHccCC--CCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHc
Q 047171 1056 IALVSQEPT-LFAGTIRQNIVYGK--EVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVL 1132 (1224)
Q Consensus 1056 i~~V~Qdp~-LF~gTIreNl~~~~--~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll 1132 (1224)
++|+||++. .|++|+++|+.... .....+...++++..++ .........+||||||||++|||||+
T Consensus 415 i~~~~q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~l~l-----------~~~~~~~~~~LSGGqkQRv~iAraL~ 483 (608)
T 3j16_B 415 VSMKPQKIAPKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLRI-----------DDIIDQEVQHLSGGELQRVAIVLALG 483 (608)
T ss_dssp EEEECSSCCCCCCSBHHHHHHHHCSSTTTSHHHHHHTHHHHTS-----------TTTSSSBSSSCCHHHHHHHHHHHHTT
T ss_pred EEEecccccccCCccHHHHHHHHhhcccccHHHHHHHHHHcCC-----------hhhhcCChhhCCHHHHHHHHHHHHHH
Confidence 999999975 56889999986421 12233344444444433 33344555689999999999999999
Q ss_pred cCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCCeEEEEccCchhhhh-cCEEEEEeC--CEEEEecChhHHhhc
Q 047171 1133 KNPMILLLDEATSALDSASENLVQEALEKMM--VGRTCVVVAHRLSTIQK-ADNIVVIKN--GKVVEQGTQSSLLSM 1204 (1224)
Q Consensus 1133 ~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~~-aD~I~vl~~--G~Ive~Gt~~eLl~~ 1204 (1224)
.+|+||||||||++||+.+...+.+.|+++. .|+|+|+|||+++.+.. ||||+||++ |+++..|+|++++..
T Consensus 484 ~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~~aDrvivl~~~~g~~~~~g~p~~~~~~ 560 (608)
T 3j16_B 484 IPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFEGIPSKNAHARAPESLLTG 560 (608)
T ss_dssp SCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEECEEETTTEEECCCCEEHHHH
T ss_pred hCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCCCeEEecCChHHHhhh
Confidence 9999999999999999999999999998864 48999999999999876 999999996 999999999999874
No 24
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=4.7e-59 Score=524.76 Aligned_cols=267 Identities=43% Similarity=0.681 Sum_probs=240.8
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCCCcccccccccccccEEEEeEEEECCCC-----------CCCCEEEEEcCCCCc
Q 047171 287 NLSFISQATTAATRIFEMIDRVPVINSEDEIGKTLAYLRGEIEFKDVDFSYPTR-----------PDTPTIGLVGSSGSG 355 (1224)
Q Consensus 287 ~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~-----------~~~~~~~ivG~sGsG 355 (1224)
.+..++++.++++|++++++.+++..+.. .........+.|+|+||+|+|++. ++++++|||||||||
T Consensus 14 ~~~~~~~~~~~~~ri~~~l~~~~~~~~~~-~~~~~~~~~~~i~~~~vs~~y~~~~~vL~~isl~i~~Ge~vaivG~sGsG 92 (306)
T 3nh6_A 14 LVPRGSHMFIDMENMFDLLKEETEVKDLP-GAGPLRFQKGRIEFENVHFSYADGRETLQDVSFTVMPGQTLALVGPSGAG 92 (306)
T ss_dssp -----CCTTCCHHHHHHHHHHHHSCCCCT-TCBCCCCSSCCEEEEEEEEESSTTCEEEEEEEEEECTTCEEEEESSSCHH
T ss_pred cchhHHHHHHHHHHHHHHHhCCccccccc-cccccCCCCCeEEEEEEEEEcCCCCceeeeeeEEEcCCCEEEEECCCCch
Confidence 45678889999999999998766543221 111222335789999999999642 357799999999999
Q ss_pred HHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcccEEecCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHH
Q 047171 356 KSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFSTSIKENILIGKPGASMETVVKAAQAANVHDF 435 (1224)
Q Consensus 356 KSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~ 435 (1224)
||||+++|+|+|+|++|+|.+||+|+.+++..++|++||||+|+|++|++||+|||.+|.+..++++++++++.++++++
T Consensus 93 KSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~eNi~~~~~~~~~~~~~~~~~~~~l~~~ 172 (306)
T 3nh6_A 93 KSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIHDA 172 (306)
T ss_dssp HHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEEEECSSCCCCSEEHHHHHHTTSTTCCHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceEEEecCCccCcccHHHHHHhhcccCCHHHHHHHHHHhCcHHH
Confidence 99999999999999999999999999999999999999999999999999999999999988889999999999999999
Q ss_pred HHhccccccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCCcchh
Q 047171 436 IMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQASQGRTMIIIAHRLSTI 515 (1224)
Q Consensus 436 i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~i~H~l~~~ 515 (1224)
+..+|+||+|.+|++|.+|||||||||+|||||+++|+|||||||||+||++++..|++.|.++.+++|+|+||||++++
T Consensus 173 i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~ 252 (306)
T 3nh6_A 173 IMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLSTV 252 (306)
T ss_dssp HHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHTTSEEEEECCSHHHH
T ss_pred HHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEEcChHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999988899999999999999
Q ss_pred hccCEEEEEeCceEEeecChHHHHhhccCCCchHHHHHHHHHH
Q 047171 516 RKADLIGVLQSGRVIESGSHDVLMQMNNGEGGAYSKMVQLQQS 558 (1224)
Q Consensus 516 ~~ad~i~vl~~G~i~~~g~~~~l~~~~~~~~~~y~~~~~~~~~ 558 (1224)
..||+|++|++|+|++.|+|+||++. ++.|++++..|..
T Consensus 253 ~~aD~i~vl~~G~iv~~G~~~el~~~----~~~y~~l~~~q~~ 291 (306)
T 3nh6_A 253 VNADQILVIKDGCIVERGRHEALLSR----GGVYADMWQLQQG 291 (306)
T ss_dssp HTCSEEEEEETTEEEEEECHHHHHHH----TSHHHHHHHHHHC
T ss_pred HcCCEEEEEECCEEEEECCHHHHHhc----ChHHHHHHHHHHh
Confidence 99999999999999999999999998 8999999988763
No 25
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=1e-53 Score=470.36 Aligned_cols=240 Identities=42% Similarity=0.683 Sum_probs=225.4
Q ss_pred ccEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcc
Q 047171 976 GFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSC 1055 (1224)
Q Consensus 976 g~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~ 1055 (1224)
.+|+++||+|+|+.. +.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.+...+|++
T Consensus 6 ~~~~~~~l~~~y~~~-~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~ 84 (247)
T 2ff7_A 6 HDITFRNIRFRYKPD-SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQ 84 (247)
T ss_dssp EEEEEEEEEEESSTT-SCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHH
T ss_pred CceeEEEEEEEeCCC-CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhc
Confidence 369999999999421 3469999999999999999999999999999999999999999999999999999988889999
Q ss_pred eEEEecCCCCCcccHHHHHccCCCCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHccCC
Q 047171 1056 IALVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNP 1135 (1224)
Q Consensus 1056 i~~V~Qdp~LF~gTIreNl~~~~~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll~~p 1135 (1224)
|+||||+|.+|++|++|||.++.+..++++++++++.+++.+++..+|.|+++.+++.+.+||||||||++|||||+++|
T Consensus 85 i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p 164 (247)
T 2ff7_A 85 VGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNP 164 (247)
T ss_dssp EEEECSSCCCTTSBHHHHHTTTCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCC
T ss_pred EEEEeCCCccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999986556788899999999999999999999999999999999999999999999999999
Q ss_pred CEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCCchhHHHHH
Q 047171 1136 MILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLSTIQKADNIVVIKNGKVVEQGTQSSLLSMGNGGAYYSLIK 1215 (1224)
Q Consensus 1136 ~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~aD~I~vl~~G~Ive~Gt~~eLl~~~~~g~y~~l~~ 1215 (1224)
++||||||||+||+.+++.+.+.|+++.+++|+|+|||+++.+..||+|++|++|++++.|+++++++. +.+.|.+++.
T Consensus 165 ~lllLDEPts~LD~~~~~~i~~~l~~~~~g~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~-~~~~~~~l~~ 243 (247)
T 2ff7_A 165 KILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSE-PESLYSYLYQ 243 (247)
T ss_dssp SEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHHHTS-TTCHHHHHHH
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhC-CchHHHHHHH
Confidence 999999999999999999999999988778999999999999988999999999999999999999875 4789999987
Q ss_pred Hh
Q 047171 1216 MQ 1217 (1224)
Q Consensus 1216 ~q 1217 (1224)
.|
T Consensus 244 ~~ 245 (247)
T 2ff7_A 244 LQ 245 (247)
T ss_dssp HH
T ss_pred hh
Confidence 66
No 26
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=100.00 E-value=9.7e-53 Score=466.28 Aligned_cols=241 Identities=44% Similarity=0.732 Sum_probs=224.7
Q ss_pred ccEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcc
Q 047171 976 GFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSC 1055 (1224)
Q Consensus 976 g~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~ 1055 (1224)
+.|+++||+|+|++....++|+|+||+|++||++||+||||||||||+++|+|+++| +|+|.+||.++.+.+...+|++
T Consensus 16 ~~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~~~~~~~~ 94 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSI 94 (260)
T ss_dssp CCEEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBCHHHHHTT
T ss_pred CeEEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcCHHHHhcc
Confidence 469999999999743224699999999999999999999999999999999999987 8999999999998888889999
Q ss_pred eEEEecCCCCCcccHHHHHccCCCCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHccCC
Q 047171 1056 IALVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNP 1135 (1224)
Q Consensus 1056 i~~V~Qdp~LF~gTIreNl~~~~~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll~~p 1135 (1224)
|+||||+|.+|++|++|||.++....+++++.++++.+++.+++..+|+|++|.+++.+.+||||||||++|||||+++|
T Consensus 95 i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p 174 (260)
T 2ghi_A 95 IGIVPQDTILFNETIKYNILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDP 174 (260)
T ss_dssp EEEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCC
T ss_pred EEEEcCCCcccccCHHHHHhccCCCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999875555678889999999999999999999999999999999999999999999999999
Q ss_pred CEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCCchhHHHHH
Q 047171 1136 MILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLSTIQKADNIVVIKNGKVVEQGTQSSLLSMGNGGAYYSLIK 1215 (1224)
Q Consensus 1136 ~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~aD~I~vl~~G~Ive~Gt~~eLl~~~~~g~y~~l~~ 1215 (1224)
+|||||||||+||+.+++.+.+.|+++.+++|+|+|||+++.+..||+|++|++|++++.|+++++++. ++.|.+++.
T Consensus 175 ~lllLDEPts~LD~~~~~~i~~~l~~l~~~~tviivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~--~~~~~~~~~ 252 (260)
T 2ghi_A 175 KIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLKL--NGEYAEMWN 252 (260)
T ss_dssp SEEEEECCCCTTCHHHHHHHHHHHHHHTTTSEEEEECSSGGGSTTCSEEEEEETTEEEEEECHHHHHHH--TSHHHHHHH
T ss_pred CEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEEECCHHHHHhc--ChHHHHHHH
Confidence 999999999999999999999999998778999999999999888999999999999999999999986 688999998
Q ss_pred Hhhc
Q 047171 1216 MQAS 1219 (1224)
Q Consensus 1216 ~q~~ 1219 (1224)
.|..
T Consensus 253 ~~~~ 256 (260)
T 2ghi_A 253 MQSG 256 (260)
T ss_dssp HHHC
T ss_pred hhhh
Confidence 7754
No 27
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=3.3e-52 Score=464.47 Aligned_cols=242 Identities=42% Similarity=0.710 Sum_probs=221.7
Q ss_pred cccEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhc
Q 047171 975 KGFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRS 1054 (1224)
Q Consensus 975 ~g~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~ 1054 (1224)
.+.|+++||+|+|++.++.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.+...+|+
T Consensus 14 ~~~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~ 93 (271)
T 2ixe_A 14 KGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHT 93 (271)
T ss_dssp CCCEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHH
T ss_pred CceEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhc
Confidence 35699999999996422356999999999999999999999999999999999999999999999999998888888999
Q ss_pred ceEEEecCCCCCcccHHHHHccCCCCCCH-HHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHcc
Q 047171 1055 CIALVSQEPTLFAGTIRQNIVYGKEVATE-AEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLK 1133 (1224)
Q Consensus 1055 ~i~~V~Qdp~LF~gTIreNl~~~~~~~~d-eei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll~ 1133 (1224)
+|+||||+|.+|+.|++|||.++.+..++ +++.++++.+++.+++..+|.|+++.+++.+.+||||||||++|||||++
T Consensus 94 ~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~ 173 (271)
T 2ixe_A 94 QVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIR 173 (271)
T ss_dssp HEEEECSSCCCCSSBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTT
T ss_pred cEEEEecCCccccccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999987654444 67778888889999999999999999999999999999999999999999
Q ss_pred CCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCCchhH
Q 047171 1134 NPMILLLDEATSALDSASENLVQEALEKMMV--GRTCVVVAHRLSTIQKADNIVVIKNGKVVEQGTQSSLLSMGNGGAYY 1211 (1224)
Q Consensus 1134 ~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~aD~I~vl~~G~Ive~Gt~~eLl~~~~~g~y~ 1211 (1224)
+|+|||||||||+||+.+++.+.+.|+++.+ ++|+|+|||+++.+..||+|++|++|++++.|+++++++. .+.|.
T Consensus 174 ~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~--~~~~~ 251 (271)
T 2ixe_A 174 KPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMER--GGCYR 251 (271)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHTTCSEEEEEETTEEEEEECHHHHHHH--TSHHH
T ss_pred CCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhC--cHHHH
Confidence 9999999999999999999999999998754 8999999999999988999999999999999999999876 68999
Q ss_pred HHHHHhh
Q 047171 1212 SLIKMQA 1218 (1224)
Q Consensus 1212 ~l~~~q~ 1218 (1224)
+++..+.
T Consensus 252 ~~~~~~~ 258 (271)
T 2ixe_A 252 SMVEALA 258 (271)
T ss_dssp HHHHC--
T ss_pred HHHHHhh
Confidence 9987663
No 28
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=7.6e-53 Score=463.46 Aligned_cols=237 Identities=42% Similarity=0.704 Sum_probs=221.9
Q ss_pred EEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcceE
Q 047171 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIA 1057 (1224)
Q Consensus 978 I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~ 1057 (1224)
|+++||+|+|++ +.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.+...+|++++
T Consensus 2 l~~~~l~~~y~~--~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (243)
T 1mv5_A 2 LSARHVDFAYDD--SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIG 79 (243)
T ss_dssp EEEEEEEECSSS--SSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCC
T ss_pred EEEEEEEEEeCC--CCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEE
Confidence 789999999952 346999999999999999999999999999999999999999999999999998888788899999
Q ss_pred EEecCCCCCcccHHHHHccC-CCCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHccCCC
Q 047171 1058 LVSQEPTLFAGTIRQNIVYG-KEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPM 1136 (1224)
Q Consensus 1058 ~V~Qdp~LF~gTIreNl~~~-~~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll~~p~ 1136 (1224)
||||+|.+|++|++|||.++ .+..++++++++++.+++.+++..+|.|+++.+++.+.+||||||||++|||||+++|+
T Consensus 80 ~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~ 159 (243)
T 1mv5_A 80 FVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPK 159 (243)
T ss_dssp EECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCS
T ss_pred EEcCCCccccccHHHHHhhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999987 45567788999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCCchhHHHHHH
Q 047171 1137 ILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLSTIQKADNIVVIKNGKVVEQGTQSSLLSMGNGGAYYSLIKM 1216 (1224)
Q Consensus 1137 ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~aD~I~vl~~G~Ive~Gt~~eLl~~~~~g~y~~l~~~ 1216 (1224)
+||||||||+||+.+++.+.+.|+++.+++|+|+|||+++.+..||+|++|++|++++.|+++++++. .+.|.+++..
T Consensus 160 lllLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~--~~~~~~~~~~ 237 (243)
T 1mv5_A 160 ILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVAT--HPLYAKYVSE 237 (243)
T ss_dssp EEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHHHH--CHHHHHHHHC
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCChHHHHhCCEEEEEECCEEEEeCCHHHHHhc--cHHHHHHHHh
Confidence 99999999999999999999999987778999999999999888999999999999999999999875 6788888876
Q ss_pred hh
Q 047171 1217 QA 1218 (1224)
Q Consensus 1217 q~ 1218 (1224)
+.
T Consensus 238 ~~ 239 (243)
T 1mv5_A 238 QL 239 (243)
T ss_dssp CC
T ss_pred hh
Confidence 54
No 29
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=1.2e-50 Score=512.47 Aligned_cols=216 Identities=26% Similarity=0.399 Sum_probs=160.2
Q ss_pred cEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHH---------HHHhcccCCC------Cc------
Q 047171 977 FIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTII---------GLIERFYDPQ------SG------ 1035 (1224)
Q Consensus 977 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~---------~lL~rl~~p~------~G------ 1035 (1224)
.+++++++ .+.|+||||+|++|+.+||+|+||||||||+ +++.+...+. +|
T Consensus 589 ~l~v~~~~--------~~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~ 660 (916)
T 3pih_A 589 SLKIKGVR--------HNNLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDK 660 (916)
T ss_dssp EEEEEEEC--------STTCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCE
T ss_pred eEEEeeec--------cccccccceEEcCCcEEEEEccCCCChhhhHHHHHHHHHHHHhccccccccccccccccccccc
Confidence 46676653 2379999999999999999999999999997 3444333332 23
Q ss_pred eEEECCccCCCCCH----------HHH-------------------------------hcceEEEecCCCCCc-------
Q 047171 1036 SVMVDERNIKSYNL----------RKL-------------------------------RSCIALVSQEPTLFA------- 1067 (1224)
Q Consensus 1036 ~I~idG~di~~~~~----------~~l-------------------------------R~~i~~V~Qdp~LF~------- 1067 (1224)
.|.+|..++...+. +.+ ++..|+++|+..++.
T Consensus 661 ~i~idq~pig~~~rs~~at~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~ 740 (916)
T 3pih_A 661 MIAIDQSPIGRTPRSNPATYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECD 740 (916)
T ss_dssp EEEECSCCCCCCTTCCHHHHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECT
T ss_pred eEeeccccccccccccccchhhhHHHHHHHhccchHHHhcccccccccccccccccccccCcceEEEeeeccCcceeecc
Confidence 35666655533221 011 134578888876543
Q ss_pred --------------------------ccHHHHHccCCCCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHH
Q 047171 1068 --------------------------GTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQ 1121 (1224)
Q Consensus 1068 --------------------------gTIreNl~~~~~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQ 1121 (1224)
.|++||+.+.......++..++++.+++ |+ ..+|+.+.+|||||
T Consensus 741 ~c~g~r~~~e~l~i~~~g~~i~~vl~~tv~eal~f~~~~~~~~~~~~~L~~vGL---------~~-~~lgq~~~~LSGGE 810 (916)
T 3pih_A 741 VCKGKRYNRETLEITYKGKNISDILDMTVDEALEFFKNIPSIKRTLQVLHDVGL---------GY-VKLGQPATTLSGGE 810 (916)
T ss_dssp TTTTSCBCTTGGGCCBTTBCHHHHHSSBHHHHHHHTTTCHHHHHHHHHHHHTTG---------GG-SBTTCCSTTCCHHH
T ss_pred cccccccchhhhhhhhccCCHHHHhhCCHHHHHHHHhcchhHHHHHHHHHHcCC---------ch-hhccCCccCCCHHH
Confidence 4667777665432122233333333332 22 34688889999999
Q ss_pred HHHHHHHHHHccCC---CEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhhcCEEEEE------eCCE
Q 047171 1122 KQRIALARAVLKNP---MILLLDEATSALDSASENLVQEALEKMM-VGRTCVVVAHRLSTIQKADNIVVI------KNGK 1191 (1224)
Q Consensus 1122 rQRlaLARAll~~p---~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~aD~I~vl------~~G~ 1191 (1224)
||||+|||||+++| +||||||||++||+.+.+.+++.|+++. +|+|||+|+|+++.++.||+|++| ++|+
T Consensus 811 rQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~~i~~ADrIivLgp~gg~~~G~ 890 (916)
T 3pih_A 811 AQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLDVIKNADHIIDLGPEGGKEGGY 890 (916)
T ss_dssp HHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEEESSSGGGCCE
T ss_pred HHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEecCCCCCCCCE
Confidence 99999999999876 7999999999999999999999999875 589999999999999999999999 8999
Q ss_pred EEEecChhHHhhcCCCchhHH
Q 047171 1192 VVEQGTQSSLLSMGNGGAYYS 1212 (1224)
Q Consensus 1192 Ive~Gt~~eLl~~~~~g~y~~ 1212 (1224)
|+++|||+|+++. .+.|..
T Consensus 891 Iv~~Gtpeel~~~--~~syt~ 909 (916)
T 3pih_A 891 IVATGTPEEIAKN--PHSYTG 909 (916)
T ss_dssp EEEEESHHHHHSC--TTCHHH
T ss_pred EEEEcCHHHHHhC--CchHHH
Confidence 9999999999986 344543
No 30
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.3e-50 Score=470.01 Aligned_cols=237 Identities=26% Similarity=0.438 Sum_probs=220.5
Q ss_pred CCCcccEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHH
Q 047171 972 EPTKGFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRK 1051 (1224)
Q Consensus 972 ~~~~g~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~ 1051 (1224)
++..+.|+++||+++|+.. +.++|+||||+|++||+++|+||||||||||+++|+|+++ ++|+|.+||.|+.+++++.
T Consensus 14 ~~~~~~i~~~~l~~~y~~~-~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~ 91 (390)
T 3gd7_A 14 WPSGGQMTVKDLTAKYTEG-GNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQ 91 (390)
T ss_dssp SSSSCCEEEEEEEEESSSS-SCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHHH
T ss_pred CCCCCeEEEEEEEEEecCC-CeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChHH
Confidence 4455789999999999632 4569999999999999999999999999999999999998 8999999999999999999
Q ss_pred HhcceEEEecCCCCCcccHHHHHccCCCCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHH
Q 047171 1052 LRSCIALVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAV 1131 (1224)
Q Consensus 1052 lR~~i~~V~Qdp~LF~gTIreNl~~~~~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAl 1131 (1224)
+|++|+||||++.+|++|++||+.++. ...+++++++++.+++.+++.+.|.++++.++++|.+||||||||+||||||
T Consensus 92 ~rr~ig~v~Q~~~lf~~tv~enl~~~~-~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL 170 (390)
T 3gd7_A 92 WRKAFGVIPQKVFIFSGTFRKNLDPNA-AHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSV 170 (390)
T ss_dssp HHHTEEEESCCCCCCSEEHHHHHCTTC-CSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHH
T ss_pred HhCCEEEEcCCcccCccCHHHHhhhcc-ccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHH
Confidence 999999999999999999999998653 3468899999999999999999999999999999999999999999999999
Q ss_pred ccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCCchhH
Q 047171 1132 LKNPMILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLSTIQKADNIVVIKNGKVVEQGTQSSLLSMGNGGAYY 1211 (1224)
Q Consensus 1132 l~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~aD~I~vl~~G~Ive~Gt~~eLl~~~~~g~y~ 1211 (1224)
+++|+|||||||||+||+.++..+++.|++...++|+|+|||+++.+..||||+||++|+|++.|+|+|++.. +...|.
T Consensus 171 ~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~~~~tvi~vtHd~e~~~~aDri~vl~~G~i~~~g~~~el~~~-p~~~~v 249 (390)
T 3gd7_A 171 LSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILELYHY-PADRFV 249 (390)
T ss_dssp HTTCCEEEEESHHHHSCHHHHHHHHHHHHTTTTTSCEEEECSSSGGGTTCSEEEEEETTEEEEESSHHHHHHC-CSBHHH
T ss_pred hcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcCHHHHHhCCEEEEEECCEEEEECCHHHHHhC-CCchHH
Confidence 9999999999999999999999999999988788999999999999888999999999999999999999987 455554
Q ss_pred H
Q 047171 1212 S 1212 (1224)
Q Consensus 1212 ~ 1212 (1224)
.
T Consensus 250 a 250 (390)
T 3gd7_A 250 A 250 (390)
T ss_dssp H
T ss_pred H
Confidence 3
No 31
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=2e-48 Score=428.25 Aligned_cols=228 Identities=49% Similarity=0.814 Sum_probs=209.3
Q ss_pred ccEEEEeEEEECC--CC----------CCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhccc
Q 047171 326 GEIEFKDVDFSYP--TR----------PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQM 393 (1224)
Q Consensus 326 ~~i~~~~v~f~y~--~~----------~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 393 (1224)
.+|+++||+|+|+ +. ++++++||+||||||||||+++|+|+++|++|+|.++|+++.+.+...+|++|
T Consensus 6 ~~~~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~i 85 (247)
T 2ff7_A 6 HDITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQV 85 (247)
T ss_dssp EEEEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHE
T ss_pred CceeEEEEEEEeCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhcE
Confidence 4699999999993 22 25679999999999999999999999999999999999999988888889999
Q ss_pred EEecCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCC
Q 047171 394 GLVNQEPILFSTSIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPK 473 (1224)
Q Consensus 394 ~~v~Q~~~lf~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~ 473 (1224)
|||+|+|.+|+.||+||+.++.+..+.+++.++++..++.+++.++|.|+++.+++++.+||||||||++|||||+++|+
T Consensus 86 ~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p~ 165 (247)
T 2ff7_A 86 GVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPK 165 (247)
T ss_dssp EEECSSCCCTTSBHHHHHTTTCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCCS
T ss_pred EEEeCCCccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999876566778889999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCCcchhhccCEEEEEeCceEEeecChHHHHhhccCCCchHHHHH
Q 047171 474 ILLLDEATSALDAESERIVQEALDQASQGRTMIIIAHRLSTIRKADLIGVLQSGRVIESGSHDVLMQMNNGEGGAYSKMV 553 (1224)
Q Consensus 474 ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~i~H~l~~~~~ad~i~vl~~G~i~~~g~~~~l~~~~~~~~~~y~~~~ 553 (1224)
+||||||||+||+.+++.+.+.|+++.+|+|+|+|||+++.+..||+|++|++|++++.|+++++++.+ .+.|.+++
T Consensus 166 lllLDEPts~LD~~~~~~i~~~l~~~~~g~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~---~~~~~~l~ 242 (247)
T 2ff7_A 166 ILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEP---ESLYSYLY 242 (247)
T ss_dssp EEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHHHTST---TCHHHHHH
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCC---chHHHHHH
Confidence 999999999999999999999998887799999999999999889999999999999999999998642 46788777
Q ss_pred HHH
Q 047171 554 QLQ 556 (1224)
Q Consensus 554 ~~~ 556 (1224)
..|
T Consensus 243 ~~~ 245 (247)
T 2ff7_A 243 QLQ 245 (247)
T ss_dssp HHH
T ss_pred Hhh
Confidence 643
No 32
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=100.00 E-value=6.2e-49 Score=429.94 Aligned_cols=226 Identities=33% Similarity=0.502 Sum_probs=204.8
Q ss_pred cEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcce
Q 047171 977 FIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCI 1056 (1224)
Q Consensus 977 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i 1056 (1224)
.|+++||+++|+.. +.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+|| ++
T Consensus 3 ~l~~~~l~~~y~~~-~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g-------------~i 68 (237)
T 2cbz_A 3 SITVRNATFTWARS-DPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG-------------SV 68 (237)
T ss_dssp CEEEEEEEEESCTT-SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS-------------CE
T ss_pred eEEEEEEEEEeCCC-CCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC-------------EE
Confidence 38999999999632 35699999999999999999999999999999999999999999999999 39
Q ss_pred EEEecCCCCCcccHHHHHccCCCCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHccCCC
Q 047171 1057 ALVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPM 1136 (1224)
Q Consensus 1057 ~~V~Qdp~LF~gTIreNl~~~~~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll~~p~ 1136 (1224)
+||||+|.+|+.|++|||.++.. ..+++..++++.+++.+.+..+|.|++|.+++.+.+||||||||++|||||+++|+
T Consensus 69 ~~v~Q~~~~~~~tv~enl~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~ 147 (237)
T 2cbz_A 69 AYVPQQAWIQNDSLRENILFGCQ-LEEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNAD 147 (237)
T ss_dssp EEECSSCCCCSEEHHHHHHTTSC-CCTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCS
T ss_pred EEEcCCCcCCCcCHHHHhhCccc-cCHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999998753 23455667777788888888899999999999999999999999999999999999
Q ss_pred EEEEeccCCCCCHHHHHHHHHHHH---HhcCCCeEEEEccCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCCchhHHH
Q 047171 1137 ILLLDEATSALDSASENLVQEALE---KMMVGRTCVVVAHRLSTIQKADNIVVIKNGKVVEQGTQSSLLSMGNGGAYYSL 1213 (1224)
Q Consensus 1137 ILlLDEaTSaLD~~te~~I~~~l~---~~~~~~TvI~IaHrl~ti~~aD~I~vl~~G~Ive~Gt~~eLl~~~~~g~y~~l 1213 (1224)
|||||||||+||+.+++.+.+.|. +..+++|+|+|||+++.+..||+|++|++|++++.|+++++++. .+.|.++
T Consensus 148 lllLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~--~~~~~~~ 225 (237)
T 2cbz_A 148 IYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLAR--DGAFAEF 225 (237)
T ss_dssp EEEEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTTGGGSSEEEEEETTEEEEEECHHHHHHH--TSHHHHH
T ss_pred EEEEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHHHHhCCEEEEEeCCEEEEeCCHHHHhhc--cHHHHHH
Confidence 999999999999999999999994 34468999999999999888999999999999999999999886 7889999
Q ss_pred HHHhhc
Q 047171 1214 IKMQAS 1219 (1224)
Q Consensus 1214 ~~~q~~ 1219 (1224)
+..|..
T Consensus 226 ~~~~~~ 231 (237)
T 2cbz_A 226 LRTYAS 231 (237)
T ss_dssp HHHTCC
T ss_pred HHHHHh
Confidence 887754
No 33
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=100.00 E-value=2e-48 Score=423.90 Aligned_cols=222 Identities=30% Similarity=0.454 Sum_probs=199.3
Q ss_pred ccEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcc
Q 047171 976 GFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSC 1055 (1224)
Q Consensus 976 g~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~ 1055 (1224)
+.|+++||+++|+.. +.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+|| +
T Consensus 5 ~~l~~~~l~~~y~~~-~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g-------------~ 70 (229)
T 2pze_A 5 TEVVMENVTAFWEEG-GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------R 70 (229)
T ss_dssp EEEEEEEEEECSSTT-SCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS-------------C
T ss_pred ceEEEEEEEEEeCCC-CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC-------------E
Confidence 469999999999632 35699999999999999999999999999999999999999999999999 3
Q ss_pred eEEEecCCCCCcccHHHHHccCCCCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHccCC
Q 047171 1056 IALVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNP 1135 (1224)
Q Consensus 1056 i~~V~Qdp~LF~gTIreNl~~~~~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll~~p 1135 (1224)
++||||+|.+|++|++||+.++.. ..+....++++..++.+++..+|.++++.+++.+.+||||||||++|||||+++|
T Consensus 71 i~~v~q~~~~~~~tv~enl~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p 149 (229)
T 2pze_A 71 ISFCSQFSWIMPGTIKENIIFGVS-YDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDA 149 (229)
T ss_dssp EEEECSSCCCCSBCHHHHHHTTSC-CCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCC
T ss_pred EEEEecCCcccCCCHHHHhhccCC-cChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCC
Confidence 999999999999999999998753 3445566777778899999999999999999999999999999999999999999
Q ss_pred CEEEEeccCCCCCHHHHHHHHHHH-HHhcCCCeEEEEccCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCCchhHHHH
Q 047171 1136 MILLLDEATSALDSASENLVQEAL-EKMMVGRTCVVVAHRLSTIQKADNIVVIKNGKVVEQGTQSSLLSMGNGGAYYSLI 1214 (1224)
Q Consensus 1136 ~ILlLDEaTSaLD~~te~~I~~~l-~~~~~~~TvI~IaHrl~ti~~aD~I~vl~~G~Ive~Gt~~eLl~~~~~g~y~~l~ 1214 (1224)
++||||||||+||+.+++.+.+.+ ++..+++|+|+|||+++.+..||+|++|++|++++.|+++++++. .+.|.+++
T Consensus 150 ~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~--~~~~~~~~ 227 (229)
T 2pze_A 150 DLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNL--QPDFSSKL 227 (229)
T ss_dssp SEEEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHHCSEEEEEETTEEEEEECHHHHHTC----CHHHHH
T ss_pred CEEEEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChHHHHhCCEEEEEECCEEEEECCHHHHHhc--ChHHHHHh
Confidence 999999999999999999999974 555568999999999999888999999999999999999999875 45666654
No 34
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=100.00 E-value=3.6e-48 Score=486.16 Aligned_cols=179 Identities=21% Similarity=0.296 Sum_probs=132.4
Q ss_pred CCCCcHHHHHHHHhc---------CCCCCCcEEEECCEecCC---CCHHHHhcccEEecCCCCCCcccHHHHHhcCCCCC
Q 047171 351 SSGSGKSTVISLLER---------FYDPVKGNILLDGHKIKK---LQLKWLRSQMGLVNQEPILFSTSIKENILIGKPGA 418 (1224)
Q Consensus 351 ~sGsGKSTl~~ll~~---------~~~~~~G~i~~~g~~~~~---~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~g~~~~ 418 (1224)
.+..||+++.+.+.. -|.|..|+|.++|++|.+ ++...+..-+.-++|++..+. + +...++..
T Consensus 270 ~~~~~~~~~~~~~~~~~Cp~C~G~Rl~~~~~~v~~~G~~I~~~~~~~v~e~~~~~~~~~~~~~~~~-~--~~~~~~~~-- 344 (842)
T 2vf7_A 270 ESASMKKRVQGYMISEECPLCHGKRLRQEALNVTFAGLDITELSRLPLARVSELLRPYAEEREPGH-A--ERVKNRPE-- 344 (842)
T ss_dssp CCHHHHHHHGGGCEEEECSSSSSSCBCTTTTTCBBTTBCHHHHHHSBHHHHHHHHHHHHTTCSSCS-T--TSSSSCSS--
T ss_pred cCHHHHHHHHhhccccCCCCCCCCccCHHHhhcccCCccHHHHhhcCHHHHHHHHHhhhhhhhhcc-c--chhhcchh--
Confidence 355688888887754 346789999999999987 555555555555555554322 1 12223221
Q ss_pred CHHHHH-----HHHHHhcHHHHHHhcccccccc-ccCCCCCCChHHHHHHHHHHHhccCC--CEEEEeCCCCCCCHHHHH
Q 047171 419 SMETVV-----KAAQAANVHDFIMKLNDGYETK-VGQFGVQLSGGQKQRIAIARALIRDP--KILLLDEATSALDAESER 490 (1224)
Q Consensus 419 ~~~~~~-----~~~~~~~~~~~i~~l~~g~~t~-~~~~g~~LSgGq~qriaiARal~~~~--~ililDE~ts~lD~~~~~ 490 (1224)
..++. +..+. + +++..+ |++.. .+....+|||||||||+|||||..+| ++|||||||++||++..+
T Consensus 345 -~~~i~~~i~~ei~~r--l-~~L~~v--GL~~l~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~ 418 (842)
T 2vf7_A 345 -QAIALQRMAADLVKR--L-DVLLHL--GLGYLGLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTE 418 (842)
T ss_dssp -HHHHHHHHHHHHHHH--H-HHHHHT--TCTTSBTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHH
T ss_pred -hHHHHHHHHHHHHHH--H-HHHHhC--CCCcCCccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHH
Confidence 12221 11111 2 245555 66543 67888999999999999999999999 599999999999999999
Q ss_pred HHHHHHHHHc-CCCeEEEEeCCcchhhccCEEEEE------eCceEEeecChHHHHh
Q 047171 491 IVQEALDQAS-QGRTMIIIAHRLSTIRKADLIGVL------QSGRVIESGSHDVLMQ 540 (1224)
Q Consensus 491 ~i~~~l~~~~-~~~t~i~i~H~l~~~~~ad~i~vl------~~G~i~~~g~~~~l~~ 540 (1224)
.+.+.++++. .|.|+|+|+||++.+..||+|++| ++|+++..|+++++.+
T Consensus 419 ~L~~~l~~L~~~G~TVIvVeHdl~~l~~aD~ii~lgpgaG~~~G~iv~~g~~~~~~~ 475 (842)
T 2vf7_A 419 ALLSALENLKRGGNSLFVVEHDLDVIRRADWLVDVGPEAGEKGGEILYSGPPEGLKH 475 (842)
T ss_dssp HHHHHHHHHHTTTCEEEEECCCHHHHTTCSEEEEECSSSGGGCCSEEEEECGGGGGG
T ss_pred HHHHHHHHHHHcCCEEEEEcCCHHHHHhCCEEEEeCCCcccCCCEEEEecCHHHHHh
Confidence 9999998765 589999999999999889999999 7999999998887653
No 35
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=100.00 E-value=2.4e-47 Score=423.00 Aligned_cols=227 Identities=48% Similarity=0.793 Sum_probs=209.0
Q ss_pred ccEEEEeEEEECCCC-------------CCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcc
Q 047171 326 GEIEFKDVDFSYPTR-------------PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQ 392 (1224)
Q Consensus 326 ~~i~~~~v~f~y~~~-------------~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~ 392 (1224)
+.|+++||+|+|++. ++++++||+||||||||||+++|+|+++| +|+|.++|+++...+...+|++
T Consensus 16 ~~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~~~~~~~~ 94 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSI 94 (260)
T ss_dssp CCEEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBCHHHHHTT
T ss_pred CeEEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcCHHHHhcc
Confidence 459999999999642 25669999999999999999999999987 8999999999988888888999
Q ss_pred cEEecCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCC
Q 047171 393 MGLVNQEPILFSTSIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDP 472 (1224)
Q Consensus 393 i~~v~Q~~~lf~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~ 472 (1224)
||||+|+|.+|+.||+|||.++.+....+++.++++.+++.+++..+|+|++|.+++++.+||||||||++|||||+++|
T Consensus 95 i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p 174 (260)
T 2ghi_A 95 IGIVPQDTILFNETIKYNILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDP 174 (260)
T ss_dssp EEEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCC
T ss_pred EEEEcCCCcccccCHHHHHhccCCCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999986555677788888888999999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCCcchhhccCEEEEEeCceEEeecChHHHHhhccCCCchHHHH
Q 047171 473 KILLLDEATSALDAESERIVQEALDQASQGRTMIIIAHRLSTIRKADLIGVLQSGRVIESGSHDVLMQMNNGEGGAYSKM 552 (1224)
Q Consensus 473 ~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~i~H~l~~~~~ad~i~vl~~G~i~~~g~~~~l~~~~~~~~~~y~~~ 552 (1224)
+|||||||||+||+.+++.+.+.|.++.+++|+|+|||+++.+..||+|++|++|++++.|+++++++. .+.|.++
T Consensus 175 ~lllLDEPts~LD~~~~~~i~~~l~~l~~~~tviivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~----~~~~~~~ 250 (260)
T 2ghi_A 175 KIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLKL----NGEYAEM 250 (260)
T ss_dssp SEEEEECCCCTTCHHHHHHHHHHHHHHTTTSEEEEECSSGGGSTTCSEEEEEETTEEEEEECHHHHHHH----TSHHHHH
T ss_pred CEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEEECCHHHHHhc----ChHHHHH
Confidence 999999999999999999999999988778999999999999888999999999999999999999886 6788888
Q ss_pred HHHHH
Q 047171 553 VQLQQ 557 (1224)
Q Consensus 553 ~~~~~ 557 (1224)
+..+.
T Consensus 251 ~~~~~ 255 (260)
T 2ghi_A 251 WNMQS 255 (260)
T ss_dssp HHHHH
T ss_pred HHhhh
Confidence 87653
No 36
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=3e-47 Score=424.43 Aligned_cols=228 Identities=43% Similarity=0.714 Sum_probs=206.6
Q ss_pred cccEEEEeEEEECCC---C----------CCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhc
Q 047171 325 RGEIEFKDVDFSYPT---R----------PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRS 391 (1224)
Q Consensus 325 ~~~i~~~~v~f~y~~---~----------~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~ 391 (1224)
.+.|+++||+|+|++ . +++++++|+||||||||||+++|+|+++|++|+|.++|+++...+...+|+
T Consensus 14 ~~~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~ 93 (271)
T 2ixe_A 14 KGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHT 93 (271)
T ss_dssp CCCEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHH
T ss_pred CceEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhc
Confidence 356999999999975 2 256799999999999999999999999999999999999998888888889
Q ss_pred ccEEecCCCCCCcccHHHHHhcCCCCCCH-HHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhcc
Q 047171 392 QMGLVNQEPILFSTSIKENILIGKPGASM-ETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIR 470 (1224)
Q Consensus 392 ~i~~v~Q~~~lf~~ti~~ni~~g~~~~~~-~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~ 470 (1224)
+||||+|+|.+|+.||+|||.++.+.... +++.++++..+++++++.+|+|+++.+++++.+|||||||||+|||||+.
T Consensus 94 ~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~ 173 (271)
T 2ixe_A 94 QVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIR 173 (271)
T ss_dssp HEEEECSSCCCCSSBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTT
T ss_pred cEEEEecCCccccccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999998654433 56677777888899999999999999999999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEeCCcchhhccCEEEEEeCceEEeecChHHHHhhccCCCch
Q 047171 471 DPKILLLDEATSALDAESERIVQEALDQASQ--GRTMIIIAHRLSTIRKADLIGVLQSGRVIESGSHDVLMQMNNGEGGA 548 (1224)
Q Consensus 471 ~~~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~i~H~l~~~~~ad~i~vl~~G~i~~~g~~~~l~~~~~~~~~~ 548 (1224)
+|+|||||||||+||+.++..+.+.|.++.+ |+|+|+|||+++.+..||+|++|++|++++.|+++++++. .+.
T Consensus 174 ~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~----~~~ 249 (271)
T 2ixe_A 174 KPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMER----GGC 249 (271)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHTTCSEEEEEETTEEEEEECHHHHHHH----TSH
T ss_pred CCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhC----cHH
Confidence 9999999999999999999999999998754 8999999999999888999999999999999999999876 678
Q ss_pred HHHHHHHH
Q 047171 549 YSKMVQLQ 556 (1224)
Q Consensus 549 y~~~~~~~ 556 (1224)
|.+++..+
T Consensus 250 ~~~~~~~~ 257 (271)
T 2ixe_A 250 YRSMVEAL 257 (271)
T ss_dssp HHHHHHC-
T ss_pred HHHHHHHh
Confidence 88877654
No 37
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=100.00 E-value=4.1e-47 Score=474.63 Aligned_cols=209 Identities=25% Similarity=0.415 Sum_probs=157.3
Q ss_pred cEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHh-cc----cC---CCCc-------------
Q 047171 977 FIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIE-RF----YD---PQSG------------- 1035 (1224)
Q Consensus 977 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~-rl----~~---p~~G------------- 1035 (1224)
.++++|++. .+|+||||+|++||.+||+|+||||||||++.|+ |. +. +..|
T Consensus 629 ~L~v~~l~~--------~~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~~~~~ 700 (972)
T 2r6f_A 629 WLEVVGARE--------HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDK 700 (972)
T ss_dssp EEEEEEECS--------SSCCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGGGCSE
T ss_pred EEEEecCcc--------cccccceEEEcCCCEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCceeeeccccccce
Confidence 589999852 2699999999999999999999999999999854 22 11 1233
Q ss_pred eEEECCccCCCCC---HH-------HHh---------cceEEEecCCCC---------------------C---------
Q 047171 1036 SVMVDERNIKSYN---LR-------KLR---------SCIALVSQEPTL---------------------F--------- 1066 (1224)
Q Consensus 1036 ~I~idG~di~~~~---~~-------~lR---------~~i~~V~Qdp~L---------------------F--------- 1066 (1224)
.|.+||.++..-+ +. ..| +..+|+||...+ |
T Consensus 701 ~I~idq~pig~~~rs~paty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~~~ce 780 (972)
T 2r6f_A 701 VIDIDQSPIGRTPRSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCE 780 (972)
T ss_dssp EEEECSSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEEEECT
T ss_pred EEEEcCcccccCccccchhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeeehhcccccccccc
Confidence 3788988874322 11 122 345788875321 0
Q ss_pred -------------------------cccHHHHHccCCCCCCHHHHHHHHHHHhHHHHHHhccccccc-ccCCCCCCCChH
Q 047171 1067 -------------------------AGTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDT-YCGERGVQLSGG 1120 (1224)
Q Consensus 1067 -------------------------~gTIreNl~~~~~~~~deei~~al~~a~l~~~I~~lp~gldt-~vge~G~~LSGG 1120 (1224)
..|+.||+.++... .++.+ ..+.+..+ |+.. ..+....+||||
T Consensus 781 ~c~G~r~~~e~l~v~~~g~sI~dvl~ltv~e~l~~~~~~---~~~~~------~~~~L~~~--gL~~~~l~~~~~~LSGG 849 (972)
T 2r6f_A 781 VCHGKRYNRETLEVTYKGKNIAEVLDMTVEDALDFFASI---PKIKR------KLETLYDV--GLGYMKLGQPATTLSGG 849 (972)
T ss_dssp TTTTCCBCTTGGGCCBTTBCHHHHHTSBHHHHHHHTCSC---HHHHH------HHHHHHHT--TCSSSBTTCCGGGCCHH
T ss_pred ccccccccchhhhhhccCCCHHHhhhcCHHHHHHHHhcc---hhHHH------HHHHHHHc--CCCcccccCchhhCCHH
Confidence 12555565554221 11111 12333333 5555 567778899999
Q ss_pred HHHHHHHHHHHccCC---CEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhhcCEEEEE------eCC
Q 047171 1121 QKQRIALARAVLKNP---MILLLDEATSALDSASENLVQEALEKMM-VGRTCVVVAHRLSTIQKADNIVVI------KNG 1190 (1224)
Q Consensus 1121 QrQRlaLARAll~~p---~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~aD~I~vl------~~G 1190 (1224)
||||++|||||+++| +||||||||++||+.+.+.+.+.|+++. +|+|||+|||+++.+..||+|++| ++|
T Consensus 850 ekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i~~aDrIivL~p~gG~~~G 929 (972)
T 2r6f_A 850 EAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIKTADYIIDLGPEGGDRGG 929 (972)
T ss_dssp HHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEECSSSTTSCC
T ss_pred HHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEEEEEcCCCCCCCC
Confidence 999999999999875 9999999999999999999999998875 589999999999999889999999 689
Q ss_pred EEEEecChhHHhhc
Q 047171 1191 KVVEQGTQSSLLSM 1204 (1224)
Q Consensus 1191 ~Ive~Gt~~eLl~~ 1204 (1224)
+|++.|+++++.+.
T Consensus 930 ~Iv~~g~~~el~~~ 943 (972)
T 2r6f_A 930 QIVAVGTPEEVAEV 943 (972)
T ss_dssp SEEEEESHHHHHTC
T ss_pred EEEEecCHHHHHhC
Confidence 99999999999875
No 38
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=9.5e-48 Score=422.87 Aligned_cols=223 Identities=44% Similarity=0.719 Sum_probs=201.0
Q ss_pred EEEEeEEEECC-CC----------CCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcccEEe
Q 047171 328 IEFKDVDFSYP-TR----------PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLV 396 (1224)
Q Consensus 328 i~~~~v~f~y~-~~----------~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v 396 (1224)
|+++||+|+|+ +. +++++++|+||||||||||+++|+|+++|++|+|.++|+++...+...+|++||||
T Consensus 2 l~~~~l~~~y~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v 81 (243)
T 1mv5_A 2 LSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFV 81 (243)
T ss_dssp EEEEEEEECSSSSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCEE
T ss_pred EEEEEEEEEeCCCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEEEE
Confidence 45666666663 21 35679999999999999999999999999999999999999887777788899999
Q ss_pred cCCCCCCcccHHHHHhcC-CCCCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCCEE
Q 047171 397 NQEPILFSTSIKENILIG-KPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKIL 475 (1224)
Q Consensus 397 ~Q~~~lf~~ti~~ni~~g-~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~il 475 (1224)
+|+|.+|+.|++|||.++ .+..+.+++.++++..++++++.++|.|+++.+++++.+||||||||++|||||+++|++|
T Consensus 82 ~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~ll 161 (243)
T 1mv5_A 82 SQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKIL 161 (243)
T ss_dssp CCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEE
T ss_pred cCCCccccccHHHHHhhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 999999999999999998 4555677888999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCCcchhhccCEEEEEeCceEEeecChHHHHhhccCCCchHHHHHH
Q 047171 476 LLDEATSALDAESERIVQEALDQASQGRTMIIIAHRLSTIRKADLIGVLQSGRVIESGSHDVLMQMNNGEGGAYSKMVQ 554 (1224)
Q Consensus 476 ilDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~i~H~l~~~~~ad~i~vl~~G~i~~~g~~~~l~~~~~~~~~~y~~~~~ 554 (1224)
|||||||+||+.+++.+.+.|.++.+|+|+|+|||+++.+..||+|++|++|++++.|+++++.+. .+.|.+++.
T Consensus 162 lLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~----~~~~~~~~~ 236 (243)
T 1mv5_A 162 MLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVAT----HPLYAKYVS 236 (243)
T ss_dssp EEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHHHH----CHHHHHHHH
T ss_pred EEECCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCChHHHHhCCEEEEEECCEEEEeCCHHHHHhc----cHHHHHHHH
Confidence 999999999999999999999887779999999999999888999999999999999999999876 566766654
No 39
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=1.1e-46 Score=430.16 Aligned_cols=225 Identities=30% Similarity=0.465 Sum_probs=191.9
Q ss_pred ccEEEEEEEEECCCCC-CccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHH---
Q 047171 976 GFIELKNVFFSYPSRP-DQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRK--- 1051 (1224)
Q Consensus 976 g~I~~~~vsf~Y~~~~-~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~--- 1051 (1224)
..|+++||+++|+... ..++|+||||+|++||++||+||||||||||+++|.|+++|++|+|.+||.|+..++.+.
T Consensus 23 ~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~ 102 (366)
T 3tui_C 23 HMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTK 102 (366)
T ss_dssp CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHH
T ss_pred ceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHH
Confidence 3699999999996432 246899999999999999999999999999999999999999999999999999998765
Q ss_pred HhcceEEEecCCCCCc-ccHHHHHccCCC--CCCHHH----HHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHH
Q 047171 1052 LRSCIALVSQEPTLFA-GTIRQNIVYGKE--VATEAE----IRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQR 1124 (1224)
Q Consensus 1052 lR~~i~~V~Qdp~LF~-gTIreNl~~~~~--~~~dee----i~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQR 1124 (1224)
+|++||||||++.+|. .||+||+.++.. ..+.++ +.++++.++ ++........+||||||||
T Consensus 103 ~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vg-----------L~~~~~~~~~~LSGGqkQR 171 (366)
T 3tui_C 103 ARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVG-----------LGDKHDSYPSNLSGGQKQR 171 (366)
T ss_dssp HHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT-----------CGGGTTCCTTTSCHHHHHH
T ss_pred HhCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcC-----------CchHhcCChhhCCHHHHHH
Confidence 4789999999999886 499999987521 223333 344444443 3334455667899999999
Q ss_pred HHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChhHH
Q 047171 1125 IALARAVLKNPMILLLDEATSALDSASENLVQEALEKMM--VGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSL 1201 (1224)
Q Consensus 1125 laLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~Gt~~eL 1201 (1224)
++|||||+.+|+|||||||||+||+.+.+.|.+.|+++. .|+|+|+|||+++.+.. ||||+||++|+|++.|+++++
T Consensus 172 VaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv~~g~~~ev 251 (366)
T 3tui_C 172 VAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEV 251 (366)
T ss_dssp HHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEECCBHHHH
T ss_pred HHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 999999999999999999999999999999999999875 38999999999999976 999999999999999999999
Q ss_pred hhcCCCchhHH
Q 047171 1202 LSMGNGGAYYS 1212 (1224)
Q Consensus 1202 l~~~~~g~y~~ 1212 (1224)
+.. +...|.+
T Consensus 252 ~~~-p~~~~~~ 261 (366)
T 3tui_C 252 FSH-PKTPLAQ 261 (366)
T ss_dssp HSS-CCSHHHH
T ss_pred HhC-CCcHHHH
Confidence 986 3444443
No 40
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=1.1e-46 Score=418.97 Aligned_cols=215 Identities=28% Similarity=0.522 Sum_probs=184.5
Q ss_pred cEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCC--CCCHHHHhc
Q 047171 977 FIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIK--SYNLRKLRS 1054 (1224)
Q Consensus 977 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~--~~~~~~lR~ 1054 (1224)
.|+++||+++|++ ..++|+||||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++. ..+...+|+
T Consensus 7 ~l~i~~ls~~y~~--~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~ 84 (275)
T 3gfo_A 7 ILKVEELNYNYSD--GTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRE 84 (275)
T ss_dssp EEEEEEEEEECTT--SCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHH
T ss_pred EEEEEEEEEEECC--CCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhC
Confidence 5999999999963 235999999999999999999999999999999999999999999999999984 334567899
Q ss_pred ceEEEecCC--CCCcccHHHHHccCCC--CCCHHH----HHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHH
Q 047171 1055 CIALVSQEP--TLFAGTIRQNIVYGKE--VATEAE----IRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIA 1126 (1224)
Q Consensus 1055 ~i~~V~Qdp--~LF~gTIreNl~~~~~--~~~dee----i~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRla 1126 (1224)
+||||||+| .+|..|++||+.++.. ..+.++ +.++++..+ ++........+||||||||++
T Consensus 85 ~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~-----------L~~~~~~~~~~LSgGqkQRv~ 153 (275)
T 3gfo_A 85 SIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTG-----------IEHLKDKPTHCLSFGQKKRVA 153 (275)
T ss_dssp SEEEECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTT-----------CGGGTTSBGGGSCHHHHHHHH
T ss_pred cEEEEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcC-----------CchhhcCCcccCCHHHHHHHH
Confidence 999999998 5788999999987631 223333 333343333 333444556689999999999
Q ss_pred HHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 047171 1127 LARAVLKNPMILLLDEATSALDSASENLVQEALEKMM--VGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSLLS 1203 (1224)
Q Consensus 1127 LARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~Gt~~eLl~ 1203 (1224)
|||||+.+|++||||||||+||+.+.+.+.+.|+++. +|+|+|+|||+++.+.. ||||++|++|++++.|++++++.
T Consensus 154 iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 233 (275)
T 3gfo_A 154 IAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFA 233 (275)
T ss_dssp HHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSGGGGCSEEEEEETTEEEEEECHHHHTH
T ss_pred HHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhc
Confidence 9999999999999999999999999999999998875 38999999999999976 99999999999999999999986
Q ss_pred c
Q 047171 1204 M 1204 (1224)
Q Consensus 1204 ~ 1204 (1224)
.
T Consensus 234 ~ 234 (275)
T 3gfo_A 234 E 234 (275)
T ss_dssp H
T ss_pred C
Confidence 4
No 41
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=2.4e-46 Score=410.63 Aligned_cols=219 Identities=26% Similarity=0.429 Sum_probs=188.3
Q ss_pred cEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHH-hcc
Q 047171 977 FIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKL-RSC 1055 (1224)
Q Consensus 977 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~l-R~~ 1055 (1224)
.|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.+...+ |++
T Consensus 6 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 82 (240)
T 1ji0_A 6 VLEVQSLHVYYGA---IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMG 82 (240)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTT
T ss_pred eEEEEeEEEEECC---eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCC
Confidence 4899999999953 469999999999999999999999999999999999999999999999999988887665 556
Q ss_pred eEEEecCCCCCcc-cHHHHHccCC-CCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHcc
Q 047171 1056 IALVSQEPTLFAG-TIRQNIVYGK-EVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLK 1133 (1224)
Q Consensus 1056 i~~V~Qdp~LF~g-TIreNl~~~~-~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll~ 1133 (1224)
++||||+|.+|.+ |++||+.++. +..+.++..+.+ .+.++.++ |++...+..+.+||||||||++|||||++
T Consensus 83 i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~-----~~~l~~~~-~l~~~~~~~~~~LSgGq~qrv~lAraL~~ 156 (240)
T 1ji0_A 83 IALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDL-----EWIFSLFP-RLKERLKQLGGTLSGGEQQMLAIGRALMS 156 (240)
T ss_dssp EEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHH-----HHHHHHCH-HHHTTTTSBSSSSCHHHHHHHHHHHHHTT
T ss_pred EEEEecCCccCCCCcHHHHHHHhhhcCCCHHHHHHHH-----HHHHHHcc-cHhhHhcCChhhCCHHHHHHHHHHHHHHc
Confidence 9999999999986 9999999863 222222333222 23344443 45556667788999999999999999999
Q ss_pred CCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 047171 1134 NPMILLLDEATSALDSASENLVQEALEKMM-VGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSLLSM 1204 (1224)
Q Consensus 1134 ~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~Gt~~eLl~~ 1204 (1224)
+|++||||||||+||+.+.+.+.+.|+++. +|+|+|+|||+++.+.. ||+|++|++|++++.|+++++++.
T Consensus 157 ~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 229 (240)
T 1ji0_A 157 RPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDN 229 (240)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHTC
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHHhcC
Confidence 999999999999999999999999998875 68999999999988754 999999999999999999999763
No 42
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=100.00 E-value=2.7e-45 Score=460.26 Aligned_cols=209 Identities=24% Similarity=0.363 Sum_probs=154.5
Q ss_pred cEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHh-c----ccC---CCCce------------
Q 047171 977 FIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIE-R----FYD---PQSGS------------ 1036 (1224)
Q Consensus 977 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~-r----l~~---p~~G~------------ 1036 (1224)
.++++|++. .+|+||||+|++||++||+|+||||||||+++|+ + .+. +..|.
T Consensus 647 ~L~v~~l~~--------~~Lk~Vsl~I~~GeivaI~G~nGSGKSTLl~~il~g~l~~~l~~~~~~~G~~~~i~G~~~~~~ 718 (993)
T 2ygr_A 647 QLTVVGARE--------HNLRGIDVSFPLGVLTSVTGVSGSGKSTLVNDILAAVLANRLNGARQVPGRHTRVTGLDYLDK 718 (993)
T ss_dssp EEEEEEECS--------TTCCSEEEEEESSSEEEEECSTTSSHHHHHTTTHHHHHHHHTTCCCCCCCSEEEECCCTTCSE
T ss_pred eEEEecCcc--------ccccCceEEECCCCEEEEEcCCCCCHHHHHHHHHHHHHHhhhcCCcCCCCceeeecCccccce
Confidence 589999852 2699999999999999999999999999999853 2 221 23343
Q ss_pred -EEECCccCCCCC---HH-------HHh---------cceEEEecCCCC---------------------C---------
Q 047171 1037 -VMVDERNIKSYN---LR-------KLR---------SCIALVSQEPTL---------------------F--------- 1066 (1224)
Q Consensus 1037 -I~idG~di~~~~---~~-------~lR---------~~i~~V~Qdp~L---------------------F--------- 1066 (1224)
|.+|+.++...+ +. ..| +..+|+||...+ |
T Consensus 719 ~i~idq~pig~~~rs~paty~~~~d~ir~lfa~~p~ar~~gy~~~~fsfn~~~grC~~C~g~G~~~~e~~fl~~v~~~ce 798 (993)
T 2ygr_A 719 LVRIDQSPIGRTPRSNPATYTGVFDKIRTLFAATNEAKVRGYKPGRFSFNVKGGRCEACTGDGTIKIEMNFLPDVYVPCE 798 (993)
T ss_dssp EECCCCSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHTTTCCTTTTCTTSTTTBCTTTTSSSEEEECCTTSCCEEEECT
T ss_pred EEEecCcccccCcccchhhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeehhhccccceeeeh
Confidence 566666663221 11 122 345777775321 0
Q ss_pred -------------------------cccHHHHHccCCCCCCHHHHHHHHHHHhHHHHHHhccccccc-ccCCCCCCCChH
Q 047171 1067 -------------------------AGTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDT-YCGERGVQLSGG 1120 (1224)
Q Consensus 1067 -------------------------~gTIreNl~~~~~~~~deei~~al~~a~l~~~I~~lp~gldt-~vge~G~~LSGG 1120 (1224)
..|+.||+.++... ..+.+ ..+.+..+ |+.. ..+....+||||
T Consensus 799 ~c~G~r~~~e~l~v~~~g~si~dvl~ltv~e~l~~~~~~---~~~~~------~~~~L~~l--gL~~~~l~~~~~~LSGG 867 (993)
T 2ygr_A 799 VCQGARYNRETLEVHYKGKTVSEVLDMSIEEAAEFFEPI---AGVHR------YLRTLVDV--GLGYVRLGQPAPTLSGG 867 (993)
T ss_dssp TTTTCSBCGGGGGCCBTTBCHHHHHSSBHHHHHHHSTTC---HHHHH------HHHHHHHT--TGGGSBTTCCGGGSCHH
T ss_pred hccccccchhhhhhhccCCCHHHHhhccHHHHHHHhhcc---hHHHH------HHHHHHHc--CCCcccccCccccCCHH
Confidence 12444555443211 11111 12333333 4554 567788899999
Q ss_pred HHHHHHHHHHHccCC---CEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhhcCEEEEE------eCC
Q 047171 1121 QKQRIALARAVLKNP---MILLLDEATSALDSASENLVQEALEKMM-VGRTCVVVAHRLSTIQKADNIVVI------KNG 1190 (1224)
Q Consensus 1121 QrQRlaLARAll~~p---~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~aD~I~vl------~~G 1190 (1224)
|||||+|||||+++| +||||||||++||+.+.+.+.+.|+++. .|+|||+|||+++.+..||+|++| ++|
T Consensus 868 ekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i~~aDrIivL~p~gg~~~G 947 (993)
T 2ygr_A 868 EAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIEHNLDVIKTSDWIIDLGPEGGAGGG 947 (993)
T ss_dssp HHHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEEESSSTTSCS
T ss_pred HHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEEEEECCCcCCCCC
Confidence 999999999999875 9999999999999999999999998875 589999999999999889999999 689
Q ss_pred EEEEecChhHHhhc
Q 047171 1191 KVVEQGTQSSLLSM 1204 (1224)
Q Consensus 1191 ~Ive~Gt~~eLl~~ 1204 (1224)
+|++.|+++++.+.
T Consensus 948 ~Iv~~G~~~el~~~ 961 (993)
T 2ygr_A 948 TVVAQGTPEDVAAV 961 (993)
T ss_dssp EEEEEECHHHHHHC
T ss_pred EEEEecCHHHHHhC
Confidence 99999999999875
No 43
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=1.4e-46 Score=410.81 Aligned_cols=214 Identities=31% Similarity=0.447 Sum_probs=179.3
Q ss_pred EEEEEEEEECCCCC-CccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHH----
Q 047171 978 IELKNVFFSYPSRP-DQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKL---- 1052 (1224)
Q Consensus 978 I~~~~vsf~Y~~~~-~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~l---- 1052 (1224)
|+++||+++|+.+. +.++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++.+++...+
T Consensus 2 l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 81 (235)
T 3tif_A 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIR 81 (235)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHH
T ss_pred EEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHh
Confidence 78999999996432 2469999999999999999999999999999999999999999999999999999987764
Q ss_pred hcceEEEecCCCCCcc-cHHHHHccCC-----CCCCHHH----HHHHHHHHhHHHHHHhcccccccc-cCCCCCCCChHH
Q 047171 1053 RSCIALVSQEPTLFAG-TIRQNIVYGK-----EVATEAE----IRKAAVLANAHEFISSTEDGYDTY-CGERGVQLSGGQ 1121 (1224)
Q Consensus 1053 R~~i~~V~Qdp~LF~g-TIreNl~~~~-----~~~~dee----i~~al~~a~l~~~I~~lp~gldt~-vge~G~~LSGGQ 1121 (1224)
|++++||||+|.+|.. |++||+.++. ...+.++ +.++++.. |+... ....+.+|||||
T Consensus 82 ~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~~LSgGq 150 (235)
T 3tif_A 82 RDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMA-----------ELEERFANHKPNQLSGGQ 150 (235)
T ss_dssp HHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHT-----------TCCGGGTTCCGGGSCHHH
T ss_pred hccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHC-----------CCChhhhhCChhhCCHHH
Confidence 4579999999999986 9999997641 1223322 22333332 23222 245667899999
Q ss_pred HHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhhcCEEEEEeCCEEEEecChh
Q 047171 1122 KQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMV--GRTCVVVAHRLSTIQKADNIVVIKNGKVVEQGTQS 1199 (1224)
Q Consensus 1122 rQRlaLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~aD~I~vl~~G~Ive~Gt~~ 1199 (1224)
|||++|||||+++|++||||||||+||+.+.+.+.+.|+++.+ |+|+|+|||+++..+.||+|++|++|+|++.|+.+
T Consensus 151 ~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~d~i~~l~~G~i~~~~~~~ 230 (235)
T 3tif_A 151 QQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKLR 230 (235)
T ss_dssp HHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHTTSSEEEEEETTEEEEEEECC
T ss_pred HHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHhCCEEEEEECCEEEEEcChh
Confidence 9999999999999999999999999999999999999998753 89999999999977779999999999999999887
Q ss_pred HHh
Q 047171 1200 SLL 1202 (1224)
Q Consensus 1200 eLl 1202 (1224)
++-
T Consensus 231 ~~~ 233 (235)
T 3tif_A 231 GFD 233 (235)
T ss_dssp ---
T ss_pred hhc
Confidence 763
No 44
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=1.2e-45 Score=410.07 Aligned_cols=213 Identities=27% Similarity=0.443 Sum_probs=187.0
Q ss_pred cEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcce
Q 047171 977 FIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCI 1056 (1224)
Q Consensus 977 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i 1056 (1224)
.|+++||+++|+ +.++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+.+.+++.+
T Consensus 11 ~l~~~~l~~~~~---~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i 87 (266)
T 4g1u_C 11 LLEASHLHYHVQ---QQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTR 87 (266)
T ss_dssp EEEEEEEEEEET---TEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHE
T ss_pred eEEEEeEEEEeC---CeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheE
Confidence 599999999995 35699999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCC-CcccHHHHHccCCCCC----CHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHH
Q 047171 1057 ALVSQEPTL-FAGTIRQNIVYGKEVA----TEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAV 1131 (1224)
Q Consensus 1057 ~~V~Qdp~L-F~gTIreNl~~~~~~~----~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAl 1131 (1224)
+|++|++.+ |..|++||+.++.... .++++.++++..++.+ .......+||||||||++|||||
T Consensus 88 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgGq~QRv~iAraL 156 (266)
T 4g1u_C 88 AVMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLA-----------LAQRDYRVLSGGEQQRVQLARVL 156 (266)
T ss_dssp EEECSCCCCCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCST-----------TTTSBGGGCCHHHHHHHHHHHHH
T ss_pred EEEecCCccCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChh-----------HhcCCcccCCHHHHHHHHHHHHH
Confidence 999999976 6789999998864321 2344555555554422 22334457999999999999999
Q ss_pred cc------CCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChhHHh
Q 047171 1132 LK------NPMILLLDEATSALDSASENLVQEALEKMMV--GRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSLL 1202 (1224)
Q Consensus 1132 l~------~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~Gt~~eLl 1202 (1224)
++ +|++||||||||+||+.+.+.+.+.|+++.+ ++|+|+|||+++.+.. ||||++|++|++++.|++++++
T Consensus 157 ~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i~~~g~~~~~~ 236 (266)
T 4g1u_C 157 AQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKLVACGTPEEVL 236 (266)
T ss_dssp HHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHC
T ss_pred hcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEEcCHHHHh
Confidence 99 9999999999999999999999999988753 4699999999999875 9999999999999999999997
Q ss_pred h
Q 047171 1203 S 1203 (1224)
Q Consensus 1203 ~ 1203 (1224)
.
T Consensus 237 ~ 237 (266)
T 4g1u_C 237 N 237 (266)
T ss_dssp C
T ss_pred C
Confidence 5
No 45
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=2.5e-45 Score=405.89 Aligned_cols=214 Identities=30% Similarity=0.463 Sum_probs=184.2
Q ss_pred cEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCC--CCCHHHHhc
Q 047171 977 FIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIK--SYNLRKLRS 1054 (1224)
Q Consensus 977 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~--~~~~~~lR~ 1054 (1224)
.|+++||+++|+ +.++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++. ..+...+|+
T Consensus 24 ~l~i~~l~~~y~---~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 100 (263)
T 2olj_A 24 MIDVHQLKKSFG---SLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVRE 100 (263)
T ss_dssp SEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHH
T ss_pred eEEEEeEEEEEC---CEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhC
Confidence 599999999995 346999999999999999999999999999999999999999999999999985 345567889
Q ss_pred ceEEEecCCCCCcc-cHHHHHccCC---CCCCHH----HHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHH
Q 047171 1055 CIALVSQEPTLFAG-TIRQNIVYGK---EVATEA----EIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIA 1126 (1224)
Q Consensus 1055 ~i~~V~Qdp~LF~g-TIreNl~~~~---~~~~de----ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRla 1126 (1224)
+|+||||++.+|.. |++||+.++. ...+.+ ++.++++..+ ++........+||||||||++
T Consensus 101 ~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~-----------L~~~~~~~~~~LSgGqkQRv~ 169 (263)
T 2olj_A 101 EVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVG-----------LKDKAHAYPDSLSGGQAQRVA 169 (263)
T ss_dssp HEEEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTT-----------CGGGTTSCGGGSCHHHHHHHH
T ss_pred cEEEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCC-----------CchHhcCChhhCCHHHHHHHH
Confidence 99999999999875 9999998742 112222 2333343333 333344556789999999999
Q ss_pred HHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 047171 1127 LARAVLKNPMILLLDEATSALDSASENLVQEALEKMM-VGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSLLSM 1204 (1224)
Q Consensus 1127 LARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~Gt~~eLl~~ 1204 (1224)
|||||+.+|++||||||||+||+.+.+.+.+.|+++. +|+|+|+|||+++.+.. ||+|++|++|++++.|+++++++.
T Consensus 170 lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
T 2olj_A 170 IARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFDR 249 (263)
T ss_dssp HHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred HHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 9999999999999999999999999999999998875 48999999999999875 999999999999999999999875
No 46
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=1.6e-45 Score=420.84 Aligned_cols=222 Identities=28% Similarity=0.460 Sum_probs=186.9
Q ss_pred cEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCC--CCHHHHhc
Q 047171 977 FIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKS--YNLRKLRS 1054 (1224)
Q Consensus 977 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~--~~~~~lR~ 1054 (1224)
.|+++||+++|+ +.++|+||||+|++||.++|+||||||||||+++|.|+++|++|+|.+||.++.+ .+....|+
T Consensus 4 ~l~i~~ls~~y~---~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r 80 (359)
T 3fvq_A 4 ALHIGHLSKSFQ---NTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRER 80 (359)
T ss_dssp CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGS
T ss_pred EEEEEeEEEEEC---CEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhC
Confidence 489999999995 3569999999999999999999999999999999999999999999999999832 23344678
Q ss_pred ceEEEecCCCCCc-ccHHHHHccCCCC--CC----HHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHH
Q 047171 1055 CIALVSQEPTLFA-GTIRQNIVYGKEV--AT----EAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIAL 1127 (1224)
Q Consensus 1055 ~i~~V~Qdp~LF~-gTIreNl~~~~~~--~~----deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaL 1127 (1224)
+||||||++.+|. .|++|||.++... .+ ++++.++++.+++. ........+||||||||++|
T Consensus 81 ~ig~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~-----------~~~~r~~~~LSGGq~QRVal 149 (359)
T 3fvq_A 81 RLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGIS-----------ELAGRYPHELSGGQQQRAAL 149 (359)
T ss_dssp CCEEECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCG-----------GGTTSCGGGSCHHHHHHHHH
T ss_pred CEEEEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCc-----------hHhcCChhhCCHHHHHHHHH
Confidence 8999999999996 5999999987431 12 23345555555443 33445556899999999999
Q ss_pred HHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 047171 1128 ARAVLKNPMILLLDEATSALDSASENLVQEALEKMM--VGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSLLSM 1204 (1224)
Q Consensus 1128 ARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~Gt~~eLl~~ 1204 (1224)
||||+.+|++||||||||+||+.+...+++.|.+.. .|+|+|+|||+++.+.. ||||+||++|+|++.|+++|++..
T Consensus 150 ArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~el~~~ 229 (359)
T 3fvq_A 150 ARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRILQTASPHELYRQ 229 (359)
T ss_dssp HHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEEeCHHHHHhC
Confidence 999999999999999999999999999998776653 48999999999999865 999999999999999999999986
Q ss_pred CCCchhHHH
Q 047171 1205 GNGGAYYSL 1213 (1224)
Q Consensus 1205 ~~~g~y~~l 1213 (1224)
+...|...
T Consensus 230 -p~~~~~a~ 237 (359)
T 3fvq_A 230 -PADLDAAL 237 (359)
T ss_dssp -CSCHHHHH
T ss_pred -cccHHHHH
Confidence 45555433
No 47
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=4e-45 Score=403.07 Aligned_cols=213 Identities=27% Similarity=0.434 Sum_probs=184.9
Q ss_pred ccEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcc
Q 047171 976 GFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSC 1055 (1224)
Q Consensus 976 g~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~ 1055 (1224)
+.|+++||+++|+ +.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.. ....+|++
T Consensus 14 ~~l~i~~l~~~y~---~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~-~~~~~~~~ 89 (256)
T 1vpl_A 14 GAVVVKDLRKRIG---KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHEVRKL 89 (256)
T ss_dssp CCEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTT-CHHHHHTT
T ss_pred CeEEEEEEEEEEC---CEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCc-cHHHHhhc
Confidence 5699999999995 3469999999999999999999999999999999999999999999999999876 56678899
Q ss_pred eEEEecCCCCCcc-cHHHHHccCCC--CCCH----HHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHH
Q 047171 1056 IALVSQEPTLFAG-TIRQNIVYGKE--VATE----AEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALA 1128 (1224)
Q Consensus 1056 i~~V~Qdp~LF~g-TIreNl~~~~~--~~~d----eei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLA 1128 (1224)
|+||||+|.+|.. |++||+.++.. ..+. +++.++++..++. ........+||||||||++||
T Consensus 90 i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~-----------~~~~~~~~~LSgGq~qRv~lA 158 (256)
T 1vpl_A 90 ISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLG-----------EKIKDRVSTYSKGMVRKLLIA 158 (256)
T ss_dssp EEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCG-----------GGGGSBGGGCCHHHHHHHHHH
T ss_pred EEEEcCCCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCc-----------hHhcCChhhCCHHHHHHHHHH
Confidence 9999999998876 99999987521 1222 2344444444433 233344567999999999999
Q ss_pred HHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 047171 1129 RAVLKNPMILLLDEATSALDSASENLVQEALEKMM-VGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSLLS 1203 (1224)
Q Consensus 1129 RAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~Gt~~eLl~ 1203 (1224)
|||+++|+|||||||||+||+.+.+.+.+.|+++. +|+|+|++||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 159 raL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 235 (256)
T 1vpl_A 159 RALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKE 235 (256)
T ss_dssp HHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHH
T ss_pred HHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHCCEEEEEECCEEEEecCHHHHHH
Confidence 99999999999999999999999999999998875 58999999999999977 99999999999999999999975
No 48
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=100.00 E-value=3.1e-45 Score=410.56 Aligned_cols=216 Identities=30% Similarity=0.456 Sum_probs=180.3
Q ss_pred ccEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcc
Q 047171 976 GFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSC 1055 (1224)
Q Consensus 976 g~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~ 1055 (1224)
+.|+++||+|.| .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+|| +
T Consensus 39 ~~l~~~~l~~~~-----~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g-------------~ 100 (290)
T 2bbs_A 39 DSLSFSNFSLLG-----TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------R 100 (290)
T ss_dssp -----------C-----CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCS-------------C
T ss_pred ceEEEEEEEEcC-----ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC-------------E
Confidence 469999999864 3599999999999999999999999999999999999999999999998 3
Q ss_pred eEEEecCCCCCcccHHHHHccCCCCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHccCC
Q 047171 1056 IALVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNP 1135 (1224)
Q Consensus 1056 i~~V~Qdp~LF~gTIreNl~~~~~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll~~p 1135 (1224)
++||||+|.+|++|++|||. +.. ..+..+.++++..++.+++..+|.++++.+++.+.+||||||||++|||||+++|
T Consensus 101 i~~v~Q~~~l~~~tv~enl~-~~~-~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p 178 (290)
T 2bbs_A 101 ISFCSQNSWIMPGTIKENII-GVS-YDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDA 178 (290)
T ss_dssp EEEECSSCCCCSSBHHHHHH-TTC-CCHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCC
T ss_pred EEEEeCCCccCcccHHHHhh-Ccc-cchHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCC
Confidence 99999999999999999998 532 3445566677788899999999999999999999999999999999999999999
Q ss_pred CEEEEeccCCCCCHHHHHHHHHHH-HHhcCCCeEEEEccCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCCchhHHH
Q 047171 1136 MILLLDEATSALDSASENLVQEAL-EKMMVGRTCVVVAHRLSTIQKADNIVVIKNGKVVEQGTQSSLLSMGNGGAYYSL 1213 (1224)
Q Consensus 1136 ~ILlLDEaTSaLD~~te~~I~~~l-~~~~~~~TvI~IaHrl~ti~~aD~I~vl~~G~Ive~Gt~~eLl~~~~~g~y~~l 1213 (1224)
++||||||||+||+.+++.+.+.+ ++..+++|+|+|||+++.+..||+|++|++|++++.|++++++.. ...|.+.
T Consensus 179 ~lllLDEPts~LD~~~~~~i~~~ll~~~~~~~tviivtHd~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~--~~~~~~~ 255 (290)
T 2bbs_A 179 DLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNL--RPDFSSK 255 (290)
T ss_dssp SEEEEESTTTTCCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHHSSEEEEEETTEEEEEECHHHHHHH--CHHHHHH
T ss_pred CEEEEECCcccCCHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHcCCEEEEEECCeEEEeCCHHHHhhh--cHHHHHH
Confidence 999999999999999999999874 445568999999999999888999999999999999999999764 3444443
No 49
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=2.9e-45 Score=406.75 Aligned_cols=215 Identities=29% Similarity=0.478 Sum_probs=183.4
Q ss_pred cEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCC----------
Q 047171 977 FIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKS---------- 1046 (1224)
Q Consensus 977 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~---------- 1046 (1224)
.|+++||+++|+ +.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++..
T Consensus 6 ~l~i~~l~~~y~---~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 82 (262)
T 1b0u_A 6 KLHVIDLHKRYG---GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKV 82 (262)
T ss_dssp CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEE
T ss_pred eEEEeeEEEEEC---CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccc
Confidence 499999999995 3469999999999999999999999999999999999999999999999999861
Q ss_pred CCH---HHHhcceEEEecCCCCCcc-cHHHHHccCC---CCCCH----HHHHHHHHHHhHHHHHHhcccccccccCCCCC
Q 047171 1047 YNL---RKLRSCIALVSQEPTLFAG-TIRQNIVYGK---EVATE----AEIRKAAVLANAHEFISSTEDGYDTYCGERGV 1115 (1224)
Q Consensus 1047 ~~~---~~lR~~i~~V~Qdp~LF~g-TIreNl~~~~---~~~~d----eei~~al~~a~l~~~I~~lp~gldt~vge~G~ 1115 (1224)
++. ..+|++++||||++.+|.. |++||+.++. ...+. +++.++++..++.+++ ......
T Consensus 83 ~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~----------~~~~~~ 152 (262)
T 1b0u_A 83 ADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERA----------QGKYPV 152 (262)
T ss_dssp SCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHH----------HTSCGG
T ss_pred cChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchh----------hcCCcc
Confidence 443 3568899999999998875 9999998742 11222 2344455555443331 334556
Q ss_pred CCChHHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh-cCEEEEEeCCEEE
Q 047171 1116 QLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMM-VGRTCVVVAHRLSTIQK-ADNIVVIKNGKVV 1193 (1224)
Q Consensus 1116 ~LSGGQrQRlaLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-aD~I~vl~~G~Iv 1193 (1224)
+||||||||++|||||+.+|+|||||||||+||+.+.+.+.+.|+++. +|+|+|+|||+++.+.. ||+|++|++|+++
T Consensus 153 ~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~ 232 (262)
T 1b0u_A 153 HLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIE 232 (262)
T ss_dssp GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEE
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 799999999999999999999999999999999999999999998875 48999999999999875 9999999999999
Q ss_pred EecChhHHhhc
Q 047171 1194 EQGTQSSLLSM 1204 (1224)
Q Consensus 1194 e~Gt~~eLl~~ 1204 (1224)
+.|++++++..
T Consensus 233 ~~g~~~~~~~~ 243 (262)
T 1b0u_A 233 EEGDPEQVFGN 243 (262)
T ss_dssp EEECHHHHHHS
T ss_pred EeCCHHHHHhC
Confidence 99999999875
No 50
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=5.3e-45 Score=419.19 Aligned_cols=219 Identities=27% Similarity=0.454 Sum_probs=188.4
Q ss_pred cEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcce
Q 047171 977 FIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCI 1056 (1224)
Q Consensus 977 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i 1056 (1224)
.|+++||+++|+ +.++|+||||+|++||.++|+||||||||||+++|+|+++|++|+|.+||.++...++. +++|
T Consensus 3 ~l~~~~l~~~yg---~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~--~r~i 77 (381)
T 3rlf_A 3 SVQLQNVTKAWG---EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPA--ERGV 77 (381)
T ss_dssp CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGG--GSCE
T ss_pred EEEEEeEEEEEC---CEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHH--HCCE
Confidence 489999999995 35699999999999999999999999999999999999999999999999999887765 4789
Q ss_pred EEEecCCCCCc-ccHHHHHccCCC--CCCHHH----HHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHH
Q 047171 1057 ALVSQEPTLFA-GTIRQNIVYGKE--VATEAE----IRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALAR 1129 (1224)
Q Consensus 1057 ~~V~Qdp~LF~-gTIreNl~~~~~--~~~dee----i~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLAR 1129 (1224)
+||+|++.+|. .||+|||.++.. ..+.++ +.++++..+ ++........+||||||||++|||
T Consensus 78 g~VfQ~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~-----------L~~~~~r~p~~LSGGqrQRVaiAr 146 (381)
T 3rlf_A 78 GMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQ-----------LAHLLDRKPKALSGGQRQRVAIGR 146 (381)
T ss_dssp EEECTTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTT-----------CGGGTTCCGGGSCHHHHHHHHHHH
T ss_pred EEEecCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcC-----------CchhhcCChhHCCHHHHHHHHHHH
Confidence 99999999996 599999998632 223333 334444443 333444556789999999999999
Q ss_pred HHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChhHHhhcCC
Q 047171 1130 AVLKNPMILLLDEATSALDSASENLVQEALEKMMV--GRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSLLSMGN 1206 (1224)
Q Consensus 1130 All~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~Gt~~eLl~~~~ 1206 (1224)
||+++|++||||||||+||+.+...+++.|+++.+ |.|+|+|||+++.+.. ||||+||++|+|++.|+++|+... +
T Consensus 147 AL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~~l~~~-p 225 (381)
T 3rlf_A 147 TLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHY-P 225 (381)
T ss_dssp HHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHC-C
T ss_pred HHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEeCHHHHHhC-C
Confidence 99999999999999999999999999999988753 8999999999999865 999999999999999999999986 4
Q ss_pred CchhHH
Q 047171 1207 GGAYYS 1212 (1224)
Q Consensus 1207 ~g~y~~ 1212 (1224)
...|..
T Consensus 226 ~~~~v~ 231 (381)
T 3rlf_A 226 ADRFVA 231 (381)
T ss_dssp SBHHHH
T ss_pred ccHHHH
Confidence 555543
No 51
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=100.00 E-value=8.4e-45 Score=421.38 Aligned_cols=216 Identities=27% Similarity=0.428 Sum_probs=201.6
Q ss_pred cccEEEEeEEEECCC--C----------CCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcc
Q 047171 325 RGEIEFKDVDFSYPT--R----------PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQ 392 (1224)
Q Consensus 325 ~~~i~~~~v~f~y~~--~----------~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~ 392 (1224)
.+.|+++||+|+|++ . +++++++|+||||||||||+++|+|+++ ++|+|.++|+++..++...+|++
T Consensus 17 ~~~i~~~~l~~~y~~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~~rr~ 95 (390)
T 3gd7_A 17 GGQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQWRKA 95 (390)
T ss_dssp SCCEEEEEEEEESSSSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHHHHHHT
T ss_pred CCeEEEEEEEEEecCCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChHHHhCC
Confidence 467999999999952 2 3577999999999999999999999998 99999999999999999999999
Q ss_pred cEEecCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCC
Q 047171 393 MGLVNQEPILFSTSIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDP 472 (1224)
Q Consensus 393 i~~v~Q~~~lf~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~ 472 (1224)
||||+|++.+|+.||+||+.+.. ....+++.++++..++.+++.+.|.+++|.++++|.+|||||||||||||||+++|
T Consensus 96 ig~v~Q~~~lf~~tv~enl~~~~-~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P 174 (390)
T 3gd7_A 96 FGVIPQKVFIFSGTFRKNLDPNA-AHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKA 174 (390)
T ss_dssp EEEESCCCCCCSEEHHHHHCTTC-CSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTC
T ss_pred EEEEcCCcccCccCHHHHhhhcc-ccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999998654 34678899999999999999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCCcchhhccCEEEEEeCceEEeecChHHHHhhc
Q 047171 473 KILLLDEATSALDAESERIVQEALDQASQGRTMIIIAHRLSTIRKADLIGVLQSGRVIESGSHDVLMQMN 542 (1224)
Q Consensus 473 ~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~i~H~l~~~~~ad~i~vl~~G~i~~~g~~~~l~~~~ 542 (1224)
++||||||||+||+.++..+++.|++..+++|+|+|||+++.+..||+|++|++|+|++.|+++|+.+.+
T Consensus 175 ~lLLLDEPts~LD~~~~~~l~~~l~~~~~~~tvi~vtHd~e~~~~aDri~vl~~G~i~~~g~~~el~~~p 244 (390)
T 3gd7_A 175 KILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILELYHYP 244 (390)
T ss_dssp CEEEEESHHHHSCHHHHHHHHHHHHTTTTTSCEEEECSSSGGGTTCSEEEEEETTEEEEESSHHHHHHCC
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcCHHHHHhCCEEEEEECCEEEEECCHHHHHhCC
Confidence 9999999999999999999999998877789999999999988889999999999999999999999863
No 52
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=7.7e-45 Score=402.83 Aligned_cols=214 Identities=21% Similarity=0.423 Sum_probs=183.0
Q ss_pred cEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHH-HHhcc
Q 047171 977 FIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLR-KLRSC 1055 (1224)
Q Consensus 977 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~-~lR~~ 1055 (1224)
.|+++||+++|+ +.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+.. .+|++
T Consensus 7 ~l~i~~l~~~y~---~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 83 (257)
T 1g6h_A 7 ILRTENIVKYFG---EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYG 83 (257)
T ss_dssp EEEEEEEEEEET---TEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHT
T ss_pred EEEEeeeEEEEC---CEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCC
Confidence 499999999995 34699999999999999999999999999999999999999999999999999877654 46788
Q ss_pred eEEEecCCCCCc-ccHHHHHccCCCC---------------CCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCCh
Q 047171 1056 IALVSQEPTLFA-GTIRQNIVYGKEV---------------ATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSG 1119 (1224)
Q Consensus 1056 i~~V~Qdp~LF~-gTIreNl~~~~~~---------------~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSG 1119 (1224)
++||||+|.+|. .|++||+.++... .+.++.. ..+.+.++.+ |++........+|||
T Consensus 84 i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LSg 156 (257)
T 1g6h_A 84 IVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMV-----EKAFKILEFL--KLSHLYDRKAGELSG 156 (257)
T ss_dssp EEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHH-----HHHHHHHHHT--TCGGGTTSBGGGSCH
T ss_pred EEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHH-----HHHHHHHHHc--CCchhhCCCchhCCH
Confidence 999999999886 6999999876321 1111111 1223334433 555556667778999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecC
Q 047171 1120 GQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMM-VGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGT 1197 (1224)
Q Consensus 1120 GQrQRlaLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~Gt 1197 (1224)
|||||++|||||+++|++||||||||+||+.+.+.+.+.|+++. +|+|+|+|||+++.+.. ||+|++|++|++++.|+
T Consensus 157 GqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~ 236 (257)
T 1g6h_A 157 GQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGR 236 (257)
T ss_dssp HHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEEEEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEeC
Confidence 99999999999999999999999999999999999999998875 48999999999999865 99999999999999999
Q ss_pred hhH
Q 047171 1198 QSS 1200 (1224)
Q Consensus 1198 ~~e 1200 (1224)
+++
T Consensus 237 ~~~ 239 (257)
T 1g6h_A 237 GEE 239 (257)
T ss_dssp SHH
T ss_pred HHH
Confidence 999
No 53
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=7.6e-45 Score=404.65 Aligned_cols=213 Identities=29% Similarity=0.509 Sum_probs=185.1
Q ss_pred EEEEEEEEECCCCCC--ccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcc
Q 047171 978 IELKNVFFSYPSRPD--QMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSC 1055 (1224)
Q Consensus 978 I~~~~vsf~Y~~~~~--~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~ 1055 (1224)
|+++||+++|+.... .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++... .+|++
T Consensus 3 l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~---~~~~~ 79 (266)
T 2yz2_A 3 IEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGY---EIRRN 79 (266)
T ss_dssp EEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHH---HHGGG
T ss_pred EEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchH---Hhhhh
Confidence 789999999962111 4699999999999999999999999999999999999999999999999988642 67889
Q ss_pred eEEEecCC--CCCcccHHHHHccCCCC-----CCHHHHHHHHHHHhHH--HHHHhcccccccccCCCCCCCChHHHHHHH
Q 047171 1056 IALVSQEP--TLFAGTIRQNIVYGKEV-----ATEAEIRKAAVLANAH--EFISSTEDGYDTYCGERGVQLSGGQKQRIA 1126 (1224)
Q Consensus 1056 i~~V~Qdp--~LF~gTIreNl~~~~~~-----~~deei~~al~~a~l~--~~I~~lp~gldt~vge~G~~LSGGQrQRla 1126 (1224)
++||||+| .++..|++||+.++... ..++++.++++..++. ++.. ....+||||||||++
T Consensus 80 i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----------~~~~~LSgGq~qRv~ 148 (266)
T 2yz2_A 80 IGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKD-----------RVPFFLSGGEKRRVA 148 (266)
T ss_dssp EEEECSSGGGGCCCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTT-----------CCGGGSCHHHHHHHH
T ss_pred EEEEeccchhhcCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCccccc-----------CChhhCCHHHHHHHH
Confidence 99999997 57789999999886321 1245677777777665 4433 233579999999999
Q ss_pred HHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 047171 1127 LARAVLKNPMILLLDEATSALDSASENLVQEALEKMM-VGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSLLSM 1204 (1224)
Q Consensus 1127 LARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~Gt~~eLl~~ 1204 (1224)
|||||+++|+|||||||||+||+.+.+.+.+.|+++. +|+|+|+|||+++.+.. ||+|++|++|++++.|+++++++.
T Consensus 149 lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 228 (266)
T 2yz2_A 149 IASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLEK 228 (266)
T ss_dssp HHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTTTGGGCSEEEEEETTEEEEEEEHHHHHHH
T ss_pred HHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 9999999999999999999999999999999999875 58999999999999876 999999999999999999999864
No 54
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=7.9e-45 Score=394.20 Aligned_cols=207 Identities=28% Similarity=0.402 Sum_probs=177.0
Q ss_pred cEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHH---Hh
Q 047171 977 FIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRK---LR 1053 (1224)
Q Consensus 977 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~---lR 1053 (1224)
.|+++|++++|++ .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.++|.++...+... +|
T Consensus 4 ~l~~~~l~~~y~~---~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 80 (224)
T 2pcj_A 4 ILRAENIKKVIRG---YEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLR 80 (224)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHH
T ss_pred EEEEEeEEEEECC---EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHH
Confidence 4899999999953 46999999999999999999999999999999999999999999999999998877643 34
Q ss_pred -cceEEEecCCCCCc-ccHHHHHccCCC--CCCH----HHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHH
Q 047171 1054 -SCIALVSQEPTLFA-GTIRQNIVYGKE--VATE----AEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRI 1125 (1224)
Q Consensus 1054 -~~i~~V~Qdp~LF~-gTIreNl~~~~~--~~~d----eei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRl 1125 (1224)
++++||||+|.+|. .|++||+.++.. ..+. +++.++++.. |++........+||||||||+
T Consensus 81 ~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LSgGq~qrv 149 (224)
T 2pcj_A 81 NRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSEL-----------GLGDKLSRKPYELSGGEQQRV 149 (224)
T ss_dssp HHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHT-----------TCTTCTTCCGGGSCHHHHHHH
T ss_pred hCcEEEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHc-----------CCchhhhCChhhCCHHHHHHH
Confidence 78999999999886 599999987521 1121 2233333333 343344555678999999999
Q ss_pred HHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhhcCEEEEEeCCEEEEecC
Q 047171 1126 ALARAVLKNPMILLLDEATSALDSASENLVQEALEKMM-VGRTCVVVAHRLSTIQKADNIVVIKNGKVVEQGT 1197 (1224)
Q Consensus 1126 aLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~aD~I~vl~~G~Ive~Gt 1197 (1224)
+|||||+.+|++||||||||+||+.+.+.+.+.|+++. +|+|+|+|||+++.+..||+|++|++|++++.|+
T Consensus 150 ~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~d~v~~l~~G~i~~~g~ 222 (224)
T 2pcj_A 150 AIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERELAELTHRTLEMKDGKVVGEIT 222 (224)
T ss_dssp HHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHTTSSEEEEEETTEEEEEEE
T ss_pred HHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhCCEEEEEECCEEEEEee
Confidence 99999999999999999999999999999999998875 5899999999999887799999999999999986
No 55
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=1.6e-44 Score=414.58 Aligned_cols=217 Identities=28% Similarity=0.437 Sum_probs=186.4
Q ss_pred cEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcce
Q 047171 977 FIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCI 1056 (1224)
Q Consensus 977 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i 1056 (1224)
.|+++|++++|+ +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+.. +++|
T Consensus 3 ~l~~~~l~~~y~---~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~i 77 (359)
T 2yyz_A 3 SIRVVNLKKYFG---KVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPK--YREV 77 (359)
T ss_dssp CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GTTE
T ss_pred EEEEEEEEEEEC---CEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChh--hCcE
Confidence 389999999995 34699999999999999999999999999999999999999999999999999887654 6789
Q ss_pred EEEecCCCCCc-ccHHHHHccCCCC--CCH----HHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHH
Q 047171 1057 ALVSQEPTLFA-GTIRQNIVYGKEV--ATE----AEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALAR 1129 (1224)
Q Consensus 1057 ~~V~Qdp~LF~-gTIreNl~~~~~~--~~d----eei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLAR 1129 (1224)
+||||++.+|. .|++|||.|+... .+. +++.++++..++.+ .......+||||||||++|||
T Consensus 78 g~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~-----------~~~r~~~~LSgGq~QRvalAr 146 (359)
T 2yyz_A 78 GMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDN-----------LLDRKPTQLSGGQQQRVALAR 146 (359)
T ss_dssp EEECSSCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGG-----------GTTSCGGGSCHHHHHHHHHHH
T ss_pred EEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCch-----------HhcCChhhCCHHHHHHHHHHH
Confidence 99999999996 5999999987432 122 34555555554433 333445689999999999999
Q ss_pred HHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChhHHhhcCC
Q 047171 1130 AVLKNPMILLLDEATSALDSASENLVQEALEKMMV--GRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSLLSMGN 1206 (1224)
Q Consensus 1130 All~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~Gt~~eLl~~~~ 1206 (1224)
||+++|++||||||||+||+.+.+.+++.|+++.+ |.|+|+|||+++.+.. ||+|++|++|+|++.|++++++.. +
T Consensus 147 AL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~~~-p 225 (359)
T 2yyz_A 147 ALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDEVYDS-P 225 (359)
T ss_dssp HHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS-C
T ss_pred HHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC-c
Confidence 99999999999999999999999999999988753 8999999999999855 999999999999999999999976 3
Q ss_pred Cchh
Q 047171 1207 GGAY 1210 (1224)
Q Consensus 1207 ~g~y 1210 (1224)
...|
T Consensus 226 ~~~~ 229 (359)
T 2yyz_A 226 KNMF 229 (359)
T ss_dssp SBHH
T ss_pred ccHH
Confidence 4444
No 56
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=5.8e-45 Score=406.97 Aligned_cols=214 Identities=24% Similarity=0.382 Sum_probs=182.7
Q ss_pred ccEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCC--CCCHHHHh
Q 047171 976 GFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIK--SYNLRKLR 1053 (1224)
Q Consensus 976 g~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~--~~~~~~lR 1053 (1224)
..|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++. ..+...+|
T Consensus 20 ~~l~~~~l~~~y~~---~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~ 96 (279)
T 2ihy_A 20 MLIQLDQIGRMKQG---KTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVR 96 (279)
T ss_dssp EEEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHH
T ss_pred ceEEEEeEEEEECC---EEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHc
Confidence 35999999999953 46999999999999999999999999999999999999999999999999998 77788899
Q ss_pred cceEEEecCCCC-Ccc--cHHHHHccCCCC-------CCHH---HHHHHHHHHhHHHHHHhcccccccccCCCCCCCChH
Q 047171 1054 SCIALVSQEPTL-FAG--TIRQNIVYGKEV-------ATEA---EIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGG 1120 (1224)
Q Consensus 1054 ~~i~~V~Qdp~L-F~g--TIreNl~~~~~~-------~~de---ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGG 1120 (1224)
++|+||||++.+ |.. |++||+.++... ..++ ++.++++.. |++........+||||
T Consensus 97 ~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------gl~~~~~~~~~~LSgG 165 (279)
T 2ihy_A 97 QHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLV-----------GMSAKAQQYIGYLSTG 165 (279)
T ss_dssp TTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHT-----------TCGGGTTSBGGGSCHH
T ss_pred CcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHc-----------CChhHhcCChhhCCHH
Confidence 999999999864 554 999999886311 1222 233333333 3433444556689999
Q ss_pred HHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC-CCeE--EEEccCchhhhh-cCEEEEEeCCEEEEec
Q 047171 1121 QKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMV-GRTC--VVVAHRLSTIQK-ADNIVVIKNGKVVEQG 1196 (1224)
Q Consensus 1121 QrQRlaLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~-~~Tv--I~IaHrl~ti~~-aD~I~vl~~G~Ive~G 1196 (1224)
||||++|||||+.+|++||||||||+||+.+.+.+.+.|+++.+ |+|+ |+|||+++.+.. ||+|++|++|++++.|
T Consensus 166 qkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~~~~~~~d~v~~l~~G~i~~~g 245 (279)
T 2ihy_A 166 EKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQG 245 (279)
T ss_dssp HHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGGGCCTTCCEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHHHHHHhCCEEEEEECCEEEEEC
Confidence 99999999999999999999999999999999999999988753 8899 999999999855 9999999999999999
Q ss_pred ChhHHhh
Q 047171 1197 TQSSLLS 1203 (1224)
Q Consensus 1197 t~~eLl~ 1203 (1224)
+++++++
T Consensus 246 ~~~~~~~ 252 (279)
T 2ihy_A 246 AVEDILT 252 (279)
T ss_dssp EHHHHCS
T ss_pred CHHHHhc
Confidence 9999875
No 57
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=1.7e-44 Score=413.09 Aligned_cols=214 Identities=30% Similarity=0.475 Sum_probs=184.4
Q ss_pred ccEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcc
Q 047171 976 GFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSC 1055 (1224)
Q Consensus 976 g~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~ 1055 (1224)
..|+++|++++|++ +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++...+. .|++
T Consensus 13 ~~l~~~~l~~~y~g--~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~--~~r~ 88 (355)
T 1z47_A 13 MTIEFVGVEKIYPG--GARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPP--QKRN 88 (355)
T ss_dssp EEEEEEEEEECCTT--STTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCG--GGSS
T ss_pred ceEEEEEEEEEEcC--CCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCCh--hhCc
Confidence 46999999999941 3469999999999999999999999999999999999999999999999999987654 4788
Q ss_pred eEEEecCCCCCc-ccHHHHHccCCC--CCCH----HHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHH
Q 047171 1056 IALVSQEPTLFA-GTIRQNIVYGKE--VATE----AEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALA 1128 (1224)
Q Consensus 1056 i~~V~Qdp~LF~-gTIreNl~~~~~--~~~d----eei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLA 1128 (1224)
|+||||++.+|. .|++|||.|+.. ..+. +++.++++..++. ........+||||||||++||
T Consensus 89 ig~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~-----------~~~~r~~~~LSGGq~QRvalA 157 (355)
T 1z47_A 89 VGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLE-----------SYANRFPHELSGGQQQRVALA 157 (355)
T ss_dssp EEEECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCG-----------GGTTSCGGGSCHHHHHHHHHH
T ss_pred EEEEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh-----------hHhcCCcccCCHHHHHHHHHH
Confidence 999999999997 599999988631 1222 3344455544443 333445568999999999999
Q ss_pred HHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 047171 1129 RAVLKNPMILLLDEATSALDSASENLVQEALEKMMV--GRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSLLSM 1204 (1224)
Q Consensus 1129 RAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~Gt~~eLl~~ 1204 (1224)
|||+.+|++||||||||+||+.+.+.+++.|+++.+ |+|+|+|||+++.+.. ||+|++|++|+|++.|++++++..
T Consensus 158 rAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~ 236 (355)
T 1z47_A 158 RALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEVYEK 236 (355)
T ss_dssp HHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 999999999999999999999999999999988753 8999999999999865 999999999999999999999876
No 58
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=1.4e-44 Score=415.35 Aligned_cols=217 Identities=34% Similarity=0.504 Sum_probs=185.6
Q ss_pred cEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcce
Q 047171 977 FIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCI 1056 (1224)
Q Consensus 977 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i 1056 (1224)
.|+++|++++|+ +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+.. +++|
T Consensus 3 ~l~~~~l~~~y~---~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~i 77 (362)
T 2it1_A 3 EIKLENIVKKFG---NFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPK--DRNV 77 (362)
T ss_dssp CEEEEEEEEESS---SSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GTTE
T ss_pred EEEEEeEEEEEC---CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHh--HCcE
Confidence 389999999995 34699999999999999999999999999999999999999999999999999887754 5789
Q ss_pred EEEecCCCCCc-ccHHHHHccCCC--CCCHH----HHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHH
Q 047171 1057 ALVSQEPTLFA-GTIRQNIVYGKE--VATEA----EIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALAR 1129 (1224)
Q Consensus 1057 ~~V~Qdp~LF~-gTIreNl~~~~~--~~~de----ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLAR 1129 (1224)
+||||++.+|. .|++|||.++.. ..+.+ ++.++++..++ +........+||||||||++|||
T Consensus 78 g~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L-----------~~~~~r~~~~LSGGq~QRvalAr 146 (362)
T 2it1_A 78 GLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHI-----------DKLLNRYPWQLSGGQQQRVAIAR 146 (362)
T ss_dssp EEECTTCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTC-----------TTCTTCCGGGSCHHHHHHHHHHH
T ss_pred EEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC-----------chHhhCChhhCCHHHHHHHHHHH
Confidence 99999999997 599999988631 12222 34444444443 33344455689999999999999
Q ss_pred HHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChhHHhhcCC
Q 047171 1130 AVLKNPMILLLDEATSALDSASENLVQEALEKMMV--GRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSLLSMGN 1206 (1224)
Q Consensus 1130 All~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~Gt~~eLl~~~~ 1206 (1224)
||+++|++||||||||+||+.+.+.+.+.|+++.+ |+|+|+|||+++.+.. ||+|++|++|+|++.|++++++.. +
T Consensus 147 AL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~~~~~-p 225 (362)
T 2it1_A 147 ALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMADRIAVIREGEILQVGTPDEVYYK-P 225 (362)
T ss_dssp HHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS-C
T ss_pred HHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC-c
Confidence 99999999999999999999999999999988753 8999999999998755 999999999999999999999976 3
Q ss_pred Cchh
Q 047171 1207 GGAY 1210 (1224)
Q Consensus 1207 ~g~y 1210 (1224)
...|
T Consensus 226 ~~~~ 229 (362)
T 2it1_A 226 KYKF 229 (362)
T ss_dssp SBHH
T ss_pred cchH
Confidence 4444
No 59
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=100.00 E-value=3.3e-44 Score=392.48 Aligned_cols=211 Identities=30% Similarity=0.491 Sum_probs=185.9
Q ss_pred EEEEeEEEECCC--C----------CCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcccEE
Q 047171 328 IEFKDVDFSYPT--R----------PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGL 395 (1224)
Q Consensus 328 i~~~~v~f~y~~--~----------~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 395 (1224)
|+++||+|+|++ . +++++++|+||||||||||+++|+|+++|++|+|.++| +|||
T Consensus 4 l~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g-------------~i~~ 70 (237)
T 2cbz_A 4 ITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG-------------SVAY 70 (237)
T ss_dssp EEEEEEEEESCTTSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS-------------CEEE
T ss_pred EEEEEEEEEeCCCCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC-------------EEEE
Confidence 778888888852 2 35679999999999999999999999999999999998 4999
Q ss_pred ecCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCCEE
Q 047171 396 VNQEPILFSTSIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKIL 475 (1224)
Q Consensus 396 v~Q~~~lf~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~il 475 (1224)
|+|+|++++.||+|||.++... ..++..++.+..++.+.+..+|.|++|.+++++.+||||||||++|||||+.+|++|
T Consensus 71 v~Q~~~~~~~tv~enl~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~ll 149 (237)
T 2cbz_A 71 VPQQAWIQNDSLRENILFGCQL-EEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIY 149 (237)
T ss_dssp ECSSCCCCSEEHHHHHHTTSCC-CTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEE
T ss_pred EcCCCcCCCcCHHHHhhCcccc-CHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 9999999999999999997642 234455566666777778888999999999999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHH---HHcCCCeEEEEeCCcchhhccCEEEEEeCceEEeecChHHHHhhccCCCchHHHH
Q 047171 476 LLDEATSALDAESERIVQEALD---QASQGRTMIIIAHRLSTIRKADLIGVLQSGRVIESGSHDVLMQMNNGEGGAYSKM 552 (1224)
Q Consensus 476 ilDE~ts~lD~~~~~~i~~~l~---~~~~~~t~i~i~H~l~~~~~ad~i~vl~~G~i~~~g~~~~l~~~~~~~~~~y~~~ 552 (1224)
|||||||+||+.++..+.+.+. +..+|+|+|+|||+++.+..||+|++|++|++++.|+++++++. .+.|.++
T Consensus 150 lLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~----~~~~~~~ 225 (237)
T 2cbz_A 150 LFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLAR----DGAFAEF 225 (237)
T ss_dssp EEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTTGGGSSEEEEEETTEEEEEECHHHHHHH----TSHHHHH
T ss_pred EEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHHHHhCCEEEEEeCCEEEEeCCHHHHhhc----cHHHHHH
Confidence 9999999999999999999884 34468999999999999888999999999999999999999887 6788887
Q ss_pred HHHH
Q 047171 553 VQLQ 556 (1224)
Q Consensus 553 ~~~~ 556 (1224)
+..|
T Consensus 226 ~~~~ 229 (237)
T 2cbz_A 226 LRTY 229 (237)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 7654
No 60
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=2.5e-44 Score=393.20 Aligned_cols=208 Identities=29% Similarity=0.441 Sum_probs=178.7
Q ss_pred EEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcceE
Q 047171 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIA 1057 (1224)
Q Consensus 978 I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~ 1057 (1224)
|+++||+++|+ + +|+|+||+|++ |++||+||||||||||+++|+|+++|++|+|.+||.++.+.+ ..|++++
T Consensus 2 l~~~~l~~~y~---~--~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~--~~~~~i~ 73 (240)
T 2onk_A 2 FLKVRAEKRLG---N--FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLP--PERRGIG 73 (240)
T ss_dssp CEEEEEEEEET---T--EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSC--TTTSCCB
T ss_pred EEEEEEEEEeC---C--EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCc--hhhCcEE
Confidence 68999999995 2 59999999999 999999999999999999999999999999999999987643 3578899
Q ss_pred EEecCCCCCcc-cHHHHHccCCCCCC----HHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHc
Q 047171 1058 LVSQEPTLFAG-TIRQNIVYGKEVAT----EAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVL 1132 (1224)
Q Consensus 1058 ~V~Qdp~LF~g-TIreNl~~~~~~~~----deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll 1132 (1224)
||||+|.+|.. |++||+.++..... ++++.++++.. |++........+||||||||++|||||+
T Consensus 74 ~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LSgGqkqRv~lAral~ 142 (240)
T 2onk_A 74 FVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKL-----------GIAHLLDRKPARLSGGERQRVALARALV 142 (240)
T ss_dssp CCCSSCCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTT-----------TCTTTTTCCGGGSCHHHHHHHHHHHHHT
T ss_pred EEcCCCccCCCCcHHHHHHHHHHHcCCchHHHHHHHHHHHc-----------CCHHHhcCChhhCCHHHHHHHHHHHHHH
Confidence 99999999876 99999998743221 12233333333 3433344556689999999999999999
Q ss_pred cCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 047171 1133 KNPMILLLDEATSALDSASENLVQEALEKMMV--GRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSLLSM 1204 (1224)
Q Consensus 1133 ~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~Gt~~eLl~~ 1204 (1224)
++|++||||||||+||+.+.+.+.+.|+++.+ |+|+|++||+++.+.. ||+|++|++|++++.|+++++++.
T Consensus 143 ~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 217 (240)
T 2onk_A 143 IQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSA 217 (240)
T ss_dssp TCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 99999999999999999999999999998753 8999999999998755 999999999999999999999875
No 61
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=100.00 E-value=4.3e-44 Score=393.15 Aligned_cols=208 Identities=26% Similarity=0.373 Sum_probs=184.9
Q ss_pred cEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcce
Q 047171 977 FIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCI 1056 (1224)
Q Consensus 977 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i 1056 (1224)
.|+++||+++ ++|+|+||+|++||++||+||||||||||+++|.|+++|+ |+|.++|.++.+.+...+|+++
T Consensus 4 ~l~~~~l~~~-------~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i 75 (249)
T 2qi9_C 4 VMQLQDVAES-------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHR 75 (249)
T ss_dssp EEEEEEEEET-------TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHE
T ss_pred EEEEEceEEE-------EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceE
Confidence 4899999985 4899999999999999999999999999999999999999 9999999999888888999999
Q ss_pred EEEecCCCCCcc-cHHHHHccCCC-CCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHccC
Q 047171 1057 ALVSQEPTLFAG-TIRQNIVYGKE-VATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKN 1134 (1224)
Q Consensus 1057 ~~V~Qdp~LF~g-TIreNl~~~~~-~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll~~ 1134 (1224)
+||||++.+|.. |++||+.++.. ..+++++.++++..++.+ .....+.+||||||||++|||||+++
T Consensus 76 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgGq~qrv~lAraL~~~ 144 (249)
T 2qi9_C 76 AYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDD-----------KLGRSTNQLSGGEWQRVRLAAVVLQI 144 (249)
T ss_dssp EEECSCCCCCTTCBHHHHHHTTCSSTTCHHHHHHHHHHTTCGG-----------GTTSBGGGCCHHHHHHHHHHHHHHHH
T ss_pred EEECCCCccCCCCcHHHHHHHhhccCCcHHHHHHHHHHcCChh-----------HhcCChhhCCHHHHHHHHHHHHHHcC
Confidence 999999998864 99999998742 223566666666665533 33345568999999999999999999
Q ss_pred CC-------EEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhh-hcCEEEEEeCCEEEEecChhHHhh
Q 047171 1135 PM-------ILLLDEATSALDSASENLVQEALEKMM-VGRTCVVVAHRLSTIQ-KADNIVVIKNGKVVEQGTQSSLLS 1203 (1224)
Q Consensus 1135 p~-------ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~-~aD~I~vl~~G~Ive~Gt~~eLl~ 1203 (1224)
|+ +||||||||+||+.+.+.+.+.|+++. +|+|+|+|||+++.+. .||+|++|++|++++.|+++++++
T Consensus 145 p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 222 (249)
T 2qi9_C 145 TPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLT 222 (249)
T ss_dssp CTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEEEHHHHSC
T ss_pred CCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99 999999999999999999999999875 5899999999999985 599999999999999999999975
No 62
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=3.1e-44 Score=414.01 Aligned_cols=217 Identities=26% Similarity=0.425 Sum_probs=181.4
Q ss_pred cEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcce
Q 047171 977 FIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCI 1056 (1224)
Q Consensus 977 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i 1056 (1224)
.|+++||+++|+ +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+.. +++|
T Consensus 11 ~l~~~~l~~~y~---~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~i 85 (372)
T 1v43_A 11 EVKLENLTKRFG---NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRNI 85 (372)
T ss_dssp CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GGTE
T ss_pred eEEEEEEEEEEC---CEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChh--hCcE
Confidence 499999999995 34699999999999999999999999999999999999999999999999999877654 5789
Q ss_pred EEEecCCCCCc-ccHHHHHccCCC--CCCHH----HHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHH
Q 047171 1057 ALVSQEPTLFA-GTIRQNIVYGKE--VATEA----EIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALAR 1129 (1224)
Q Consensus 1057 ~~V~Qdp~LF~-gTIreNl~~~~~--~~~de----ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLAR 1129 (1224)
+||||++.+|. .|++|||.|+.. ..+.+ ++.++++..+ ++........+||||||||++|||
T Consensus 86 g~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~-----------L~~~~~r~~~~LSGGq~QRvalAr 154 (372)
T 1v43_A 86 SMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQ-----------IEELLNRYPAQLSGGQRQRVAVAR 154 (372)
T ss_dssp EEEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTT-----------CGGGTTSCTTTCCSSCHHHHHHHH
T ss_pred EEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcC-----------ChhHhcCChhhCCHHHHHHHHHHH
Confidence 99999999996 599999998743 12333 3344444443 333445566789999999999999
Q ss_pred HHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChhHHhhcCC
Q 047171 1130 AVLKNPMILLLDEATSALDSASENLVQEALEKMMV--GRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSLLSMGN 1206 (1224)
Q Consensus 1130 All~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~Gt~~eLl~~~~ 1206 (1224)
||+++|++||||||||+||+.+.+.+++.|+++.+ |.|+|+|||+++.+.. ||+|++|++|+|++.|++++++.. +
T Consensus 155 AL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~-p 233 (372)
T 1v43_A 155 AIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLR-P 233 (372)
T ss_dssp HHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHC-C
T ss_pred HHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC-c
Confidence 99999999999999999999999999999988753 7999999999999854 999999999999999999999976 3
Q ss_pred Cchh
Q 047171 1207 GGAY 1210 (1224)
Q Consensus 1207 ~g~y 1210 (1224)
...|
T Consensus 234 ~~~~ 237 (372)
T 1v43_A 234 NSVF 237 (372)
T ss_dssp SBHH
T ss_pred ccHH
Confidence 4444
No 63
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=2.4e-44 Score=411.84 Aligned_cols=210 Identities=29% Similarity=0.505 Sum_probs=183.4
Q ss_pred EEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcceE
Q 047171 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIA 1057 (1224)
Q Consensus 978 I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~ 1057 (1224)
|+++||+++|+ +. +|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+. .|++|+
T Consensus 2 l~~~~l~~~y~---~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~--~~r~ig 75 (348)
T 3d31_A 2 IEIESLSRKWK---NF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSP--EKHDIA 75 (348)
T ss_dssp EEEEEEEEECS---SC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCH--HHHTCE
T ss_pred EEEEEEEEEEC---CE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCch--hhCcEE
Confidence 78999999995 34 9999999999999999999999999999999999999999999999999987554 478899
Q ss_pred EEecCCCCCcc-cHHHHHccCCC---CCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHcc
Q 047171 1058 LVSQEPTLFAG-TIRQNIVYGKE---VATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLK 1133 (1224)
Q Consensus 1058 ~V~Qdp~LF~g-TIreNl~~~~~---~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll~ 1133 (1224)
||||++.+|.. |++|||.++.. ...++++.++++..++.++ ......+||||||||++|||||++
T Consensus 76 ~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~v~~~l~~~~L~~~-----------~~~~~~~LSgGq~QRvalAraL~~ 144 (348)
T 3d31_A 76 FVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHL-----------LDRNPLTLSGGEQQRVALARALVT 144 (348)
T ss_dssp EECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTT-----------TTSCGGGSCHHHHHHHHHHHHTTS
T ss_pred EEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHcCCchH-----------hcCChhhCCHHHHHHHHHHHHHHc
Confidence 99999999975 99999988631 1123556666666554333 334456799999999999999999
Q ss_pred CCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 047171 1134 NPMILLLDEATSALDSASENLVQEALEKMM--VGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSLLSM 1204 (1224)
Q Consensus 1134 ~p~ILlLDEaTSaLD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~Gt~~eLl~~ 1204 (1224)
+|++||||||||+||+.+.+.+++.|+++. .|+|+|+|||+++.+.. ||+|++|++|+|++.|+++++++.
T Consensus 145 ~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~~~~~ 218 (348)
T 3d31_A 145 NPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEK 218 (348)
T ss_dssp CCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSS
T ss_pred CCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 999999999999999999999999998875 38999999999998755 999999999999999999999976
No 64
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=2e-44 Score=414.46 Aligned_cols=219 Identities=29% Similarity=0.417 Sum_probs=185.5
Q ss_pred cEEEEEEEEECCCCCCcc--ceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCC---HHH
Q 047171 977 FIELKNVFFSYPSRPDQM--IFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYN---LRK 1051 (1224)
Q Consensus 977 ~I~~~~vsf~Y~~~~~~~--vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~---~~~ 1051 (1224)
.|+++||+++|+ +.+ +|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+ ...
T Consensus 3 ~l~i~~l~~~y~---~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~ 79 (353)
T 1oxx_K 3 RIIVKNVSKVFK---KGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPP 79 (353)
T ss_dssp CEEEEEEEEEEG---GGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCG
T ss_pred EEEEEeEEEEEC---CEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCCh
Confidence 389999999995 345 999999999999999999999999999999999999999999999999986521 334
Q ss_pred HhcceEEEecCCCCCcc-cHHHHHccCCCC--CCH----HHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHH
Q 047171 1052 LRSCIALVSQEPTLFAG-TIRQNIVYGKEV--ATE----AEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQR 1124 (1224)
Q Consensus 1052 lR~~i~~V~Qdp~LF~g-TIreNl~~~~~~--~~d----eei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQR 1124 (1224)
.|++|+||||++.+|.. |++||+.++... .+. +++.++++..++.+ .......+||||||||
T Consensus 80 ~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~-----------~~~~~~~~LSGGq~QR 148 (353)
T 1oxx_K 80 EDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHH-----------VLNHFPRELSGAQQQR 148 (353)
T ss_dssp GGSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGG-----------GTTSCGGGSCHHHHHH
T ss_pred hhCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCch-----------HhcCChhhCCHHHHHH
Confidence 57899999999999974 999999987431 232 23445555544433 3334456899999999
Q ss_pred HHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChhHH
Q 047171 1125 IALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMV--GRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSL 1201 (1224)
Q Consensus 1125 laLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~Gt~~eL 1201 (1224)
++|||||+++|++||||||||+||+.+.+.+++.|+++.+ |+|+|+|||+++.+.. ||+|++|++|+|++.|+++++
T Consensus 149 valAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l 228 (353)
T 1oxx_K 149 VALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDL 228 (353)
T ss_dssp HHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 9999999999999999999999999999999999988753 8999999999999865 999999999999999999999
Q ss_pred hhcCCCchh
Q 047171 1202 LSMGNGGAY 1210 (1224)
Q Consensus 1202 l~~~~~g~y 1210 (1224)
+.. +...|
T Consensus 229 ~~~-p~~~~ 236 (353)
T 1oxx_K 229 YDN-PVSIQ 236 (353)
T ss_dssp HHS-CSSHH
T ss_pred HhC-cccHH
Confidence 976 34444
No 65
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=100.00 E-value=1.1e-43 Score=386.64 Aligned_cols=202 Identities=25% Similarity=0.420 Sum_probs=180.3
Q ss_pred ccEEEEeEEEECCC--C----------CCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhccc
Q 047171 326 GEIEFKDVDFSYPT--R----------PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQM 393 (1224)
Q Consensus 326 ~~i~~~~v~f~y~~--~----------~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 393 (1224)
+.|+++||+|+|++ . ++++++||+||||||||||+++|+|+++|++|+|.++| +|
T Consensus 5 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g-------------~i 71 (229)
T 2pze_A 5 TEVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------RI 71 (229)
T ss_dssp EEEEEEEEEECSSTTSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS-------------CE
T ss_pred ceEEEEEEEEEeCCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC-------------EE
Confidence 35888999999952 2 25679999999999999999999999999999999998 49
Q ss_pred EEecCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCC
Q 047171 394 GLVNQEPILFSTSIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPK 473 (1224)
Q Consensus 394 ~~v~Q~~~lf~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~ 473 (1224)
+||+|+|++|+.||+||+.++.. ....+..++++..++.+++..+|.++++.+++++.+||||||||++|||||+++|+
T Consensus 72 ~~v~q~~~~~~~tv~enl~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~ 150 (229)
T 2pze_A 72 SFCSQFSWIMPGTIKENIIFGVS-YDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDAD 150 (229)
T ss_dssp EEECSSCCCCSBCHHHHHHTTSC-CCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCS
T ss_pred EEEecCCcccCCCHHHHhhccCC-cChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999854 23444556667778888999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHH-HHHcCCCeEEEEeCCcchhhccCEEEEEeCceEEeecChHHHHhh
Q 047171 474 ILLLDEATSALDAESERIVQEAL-DQASQGRTMIIIAHRLSTIRKADLIGVLQSGRVIESGSHDVLMQM 541 (1224)
Q Consensus 474 ililDE~ts~lD~~~~~~i~~~l-~~~~~~~t~i~i~H~l~~~~~ad~i~vl~~G~i~~~g~~~~l~~~ 541 (1224)
+||||||||+||+.+++.+.+.+ .+..+++|+|++||+++.+..||+|++|++|++++.|+++++.+.
T Consensus 151 lllLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 219 (229)
T 2pze_A 151 LYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNL 219 (229)
T ss_dssp EEEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHHCSEEEEEETTEEEEEECHHHHHTC
T ss_pred EEEEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChHHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence 99999999999999999999864 455568999999999999888999999999999999999999765
No 66
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=6.6e-44 Score=412.45 Aligned_cols=217 Identities=25% Similarity=0.437 Sum_probs=184.9
Q ss_pred cEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCC------CCHH
Q 047171 977 FIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKS------YNLR 1050 (1224)
Q Consensus 977 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~------~~~~ 1050 (1224)
.|+++||+++|+ +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+ .+.
T Consensus 3 ~l~~~~l~~~y~---~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~- 78 (372)
T 1g29_1 3 GVRLVDVWKVFG---EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPP- 78 (372)
T ss_dssp EEEEEEEEEEET---TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCG-
T ss_pred EEEEEeEEEEEC---CEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCH-
Confidence 389999999995 3469999999999999999999999999999999999999999999999999866 544
Q ss_pred HHhcceEEEecCCCCCc-ccHHHHHccCCC--CCCHH----HHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHH
Q 047171 1051 KLRSCIALVSQEPTLFA-GTIRQNIVYGKE--VATEA----EIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQ 1123 (1224)
Q Consensus 1051 ~lR~~i~~V~Qdp~LF~-gTIreNl~~~~~--~~~de----ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQ 1123 (1224)
.+++|+||||++.+|. .|++|||.|+.. ..+.+ ++.++++..++ +........+|||||||
T Consensus 79 -~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L-----------~~~~~r~~~~LSGGq~Q 146 (372)
T 1g29_1 79 -KDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGL-----------TELLNRKPRELSGGQRQ 146 (372)
T ss_dssp -GGSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTC-----------GGGTTCCGGGSCHHHHH
T ss_pred -hHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCC-----------chHhcCCcccCCHHHHH
Confidence 3678999999999986 699999998631 12322 34444544443 33334455689999999
Q ss_pred HHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChhH
Q 047171 1124 RIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMV--GRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSS 1200 (1224)
Q Consensus 1124 RlaLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~Gt~~e 1200 (1224)
|++|||||+.+|++||||||||+||+.+.+.+++.|+++.+ |.|+|+|||+++.+.. ||+|++|++|+|++.|++++
T Consensus 147 RvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~ 226 (372)
T 1g29_1 147 RVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDE 226 (372)
T ss_dssp HHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHH
T ss_pred HHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEeCCEEEEeCCHHH
Confidence 99999999999999999999999999999999999988753 8999999999999865 99999999999999999999
Q ss_pred HhhcCCCchh
Q 047171 1201 LLSMGNGGAY 1210 (1224)
Q Consensus 1201 Ll~~~~~g~y 1210 (1224)
++.. +...|
T Consensus 227 l~~~-p~~~~ 235 (372)
T 1g29_1 227 VYDK-PANTF 235 (372)
T ss_dssp HHHS-CSBHH
T ss_pred HHhC-cccHH
Confidence 9976 34444
No 67
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=6.7e-44 Score=393.66 Aligned_cols=210 Identities=26% Similarity=0.408 Sum_probs=171.8
Q ss_pred cEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcc--cCCCCceEEECCccCCCCCHHHH-h
Q 047171 977 FIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERF--YDPQSGSVMVDERNIKSYNLRKL-R 1053 (1224)
Q Consensus 977 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl--~~p~~G~I~idG~di~~~~~~~l-R 1053 (1224)
.|+++||+++|+ +.++|+|+||+|++||++||+||||||||||+++|+|+ ++|++|+|.+||.++.+.+.... |
T Consensus 3 ~l~~~~l~~~y~---~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~ 79 (250)
T 2d2e_A 3 QLEIRDLWASID---GETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERAR 79 (250)
T ss_dssp EEEEEEEEEEET---TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHH
T ss_pred eEEEEeEEEEEC---CEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHh
Confidence 389999999995 34699999999999999999999999999999999999 89999999999999988887665 5
Q ss_pred cceEEEecCCCCCcc-cHHHHHccCCC-----CCCH----HHHHHHHHHHhHHHHHHhccccccc-ccCCCCCC-CChHH
Q 047171 1054 SCIALVSQEPTLFAG-TIRQNIVYGKE-----VATE----AEIRKAAVLANAHEFISSTEDGYDT-YCGERGVQ-LSGGQ 1121 (1224)
Q Consensus 1054 ~~i~~V~Qdp~LF~g-TIreNl~~~~~-----~~~d----eei~~al~~a~l~~~I~~lp~gldt-~vge~G~~-LSGGQ 1121 (1224)
+.++||||+|.+|.+ |++||+.++.. .... +++.++++.. |+++ .......+ |||||
T Consensus 80 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------gl~~~~~~~~~~~~LSgGq 148 (250)
T 2d2e_A 80 KGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELL-----------DWDESYLSRYLNEGFSGGE 148 (250)
T ss_dssp TTBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHH-----------TCCGGGGGSBTTCC----H
T ss_pred CcEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHc-----------CCChhHhcCCcccCCCHHH
Confidence 569999999999875 99999976421 1111 2233333333 3321 22233345 99999
Q ss_pred HHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh--cCEEEEEeCCEEEEecCh
Q 047171 1122 KQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMM-VGRTCVVVAHRLSTIQK--ADNIVVIKNGKVVEQGTQ 1198 (1224)
Q Consensus 1122 rQRlaLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~--aD~I~vl~~G~Ive~Gt~ 1198 (1224)
|||++|||||+++|++||||||||+||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|++++.|++
T Consensus 149 kQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~~d~v~~l~~G~i~~~g~~ 228 (250)
T 2d2e_A 149 KKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVVATGGP 228 (250)
T ss_dssp HHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGGGGTSCCSEEEEEETTEEEEEESH
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCCEEEEEECCEEEEEeCH
Confidence 999999999999999999999999999999999999999875 47899999999999876 599999999999999999
Q ss_pred hH
Q 047171 1199 SS 1200 (1224)
Q Consensus 1199 ~e 1200 (1224)
+.
T Consensus 229 ~~ 230 (250)
T 2d2e_A 229 EL 230 (250)
T ss_dssp HH
T ss_pred HH
Confidence 83
No 68
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=2.1e-43 Score=392.91 Aligned_cols=217 Identities=22% Similarity=0.349 Sum_probs=179.6
Q ss_pred cEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcc--cCCCCceEEECCccCCCCCHHHH-h
Q 047171 977 FIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERF--YDPQSGSVMVDERNIKSYNLRKL-R 1053 (1224)
Q Consensus 977 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl--~~p~~G~I~idG~di~~~~~~~l-R 1053 (1224)
.|+++||+++|+ +.++|+|+||+|++||++||+||||||||||+++|+|+ ++|++|+|.+||.++...+.... |
T Consensus 20 ~l~~~~l~~~y~---~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~ 96 (267)
T 2zu0_C 20 MLSIKDLHVSVE---DKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAG 96 (267)
T ss_dssp CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHH
T ss_pred eEEEEeEEEEEC---CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhh
Confidence 599999999995 34699999999999999999999999999999999999 57899999999999988877665 4
Q ss_pred cceEEEecCCCCCcc-cHHHHHccCC---------CCCCHHHHHHHHHHHhHHHHHHhccccccccc-CCCCC-CCChHH
Q 047171 1054 SCIALVSQEPTLFAG-TIRQNIVYGK---------EVATEAEIRKAAVLANAHEFISSTEDGYDTYC-GERGV-QLSGGQ 1121 (1224)
Q Consensus 1054 ~~i~~V~Qdp~LF~g-TIreNl~~~~---------~~~~deei~~al~~a~l~~~I~~lp~gldt~v-ge~G~-~LSGGQ 1121 (1224)
+.++||||+|.+|.+ |++||+.++. +..+.++..+ .+.+.+..+ |+++.. ..... +|||||
T Consensus 97 ~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~~~LSgGq 169 (267)
T 2zu0_C 97 EGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQD-----LMEEKIALL--KMPEDLLTRSVNVGFSGGE 169 (267)
T ss_dssp HTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHH-----HHHHHHHHT--TCCTTTTTSBTTTTCCHHH
T ss_pred CCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHH-----HHHHHHHHc--CCChhHhcCCcccCCCHHH
Confidence 569999999998875 8999986531 1122222211 122333332 444322 23333 599999
Q ss_pred HHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh--cCEEEEEeCCEEEEecCh
Q 047171 1122 KQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMM-VGRTCVVVAHRLSTIQK--ADNIVVIKNGKVVEQGTQ 1198 (1224)
Q Consensus 1122 rQRlaLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~--aD~I~vl~~G~Ive~Gt~ 1198 (1224)
|||++|||||+++|+|||||||||+||+.+.+.+.+.|+++. +|+|+|+|||+++.+.. ||+|++|++|++++.|++
T Consensus 170 ~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~~d~v~~l~~G~i~~~g~~ 249 (267)
T 2zu0_C 170 KKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDF 249 (267)
T ss_dssp HHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGGTSCCSEEEEEETTEEEEEECT
T ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHHHhhcCCEEEEEECCEEEEEcCH
Confidence 999999999999999999999999999999999999999875 47899999999999875 899999999999999999
Q ss_pred hHHhh
Q 047171 1199 SSLLS 1203 (1224)
Q Consensus 1199 ~eLl~ 1203 (1224)
+++..
T Consensus 250 ~~~~~ 254 (267)
T 2zu0_C 250 TLVKQ 254 (267)
T ss_dssp THHHH
T ss_pred HHHhh
Confidence 98754
No 69
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=1.7e-43 Score=391.29 Aligned_cols=208 Identities=19% Similarity=0.298 Sum_probs=179.8
Q ss_pred EEEEEEEEECCCC-CCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcce
Q 047171 978 IELKNVFFSYPSR-PDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCI 1056 (1224)
Q Consensus 978 I~~~~vsf~Y~~~-~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i 1056 (1224)
|+++|++++|++. ...++|+|+||+|+ ||++||+||||||||||+++|+|++ |++|+|.++|.++.+. .. |+++
T Consensus 2 l~~~~l~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~--~~-~~~i 76 (263)
T 2pjz_A 2 IQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKI--RN-YIRY 76 (263)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGC--SC-CTTE
T ss_pred EEEEEEEEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcch--HH-hhhe
Confidence 7899999999531 01469999999999 9999999999999999999999999 9999999999998764 33 7889
Q ss_pred E-EEecCCCCCcccHHHHHccCCC--CCCHHHHHHHHHHHhHHHHHHhcccccc-cccCCCCCCCChHHHHHHHHHHHHc
Q 047171 1057 A-LVSQEPTLFAGTIRQNIVYGKE--VATEAEIRKAAVLANAHEFISSTEDGYD-TYCGERGVQLSGGQKQRIALARAVL 1132 (1224)
Q Consensus 1057 ~-~V~Qdp~LF~gTIreNl~~~~~--~~~deei~~al~~a~l~~~I~~lp~gld-t~vge~G~~LSGGQrQRlaLARAll 1132 (1224)
+ ||||+|.+ ..|++||+.++.+ ...++++.++++..+ ++ ......+.+||||||||++|||||+
T Consensus 77 ~~~v~Q~~~l-~~tv~enl~~~~~~~~~~~~~~~~~l~~~g-----------l~~~~~~~~~~~LSgGqkqRv~lAraL~ 144 (263)
T 2pjz_A 77 STNLPEAYEI-GVTVNDIVYLYEELKGLDRDLFLEMLKALK-----------LGEEILRRKLYKLSAGQSVLVRTSLALA 144 (263)
T ss_dssp EECCGGGSCT-TSBHHHHHHHHHHHTCCCHHHHHHHHHHTT-----------CCGGGGGSBGGGSCHHHHHHHHHHHHHH
T ss_pred EEEeCCCCcc-CCcHHHHHHHhhhhcchHHHHHHHHHHHcC-----------CChhHhcCChhhCCHHHHHHHHHHHHHH
Confidence 9 99999999 9999999987532 234555655555443 44 4455666789999999999999999
Q ss_pred cCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cC-EEEEEeCCEEEEecChhHHhhc
Q 047171 1133 KNPMILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLSTIQK-AD-NIVVIKNGKVVEQGTQSSLLSM 1204 (1224)
Q Consensus 1133 ~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-aD-~I~vl~~G~Ive~Gt~~eLl~~ 1204 (1224)
++|++||||||||+||+++.+.+.+.|+++.+ |+|+|||+++.+.. || +|++|++|++++.|+++++.+.
T Consensus 145 ~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~--tviivtHd~~~~~~~~d~~i~~l~~G~i~~~g~~~~l~~~ 216 (263)
T 2pjz_A 145 SQPEIVGLDEPFENVDAARRHVISRYIKEYGK--EGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSELLES 216 (263)
T ss_dssp TCCSEEEEECTTTTCCHHHHHHHHHHHHHSCS--EEEEEESCGGGGGGCTTSEEEEEETTEEEEEEEHHHHHTE
T ss_pred hCCCEEEEECCccccCHHHHHHHHHHHHHhcC--cEEEEEcCHHHHHHhcCceEEEEECCEEEEecCHHHHHhh
Confidence 99999999999999999999999999988754 99999999999864 99 9999999999999999999853
No 70
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=8.4e-43 Score=387.86 Aligned_cols=208 Identities=29% Similarity=0.466 Sum_probs=175.9
Q ss_pred cEEEEeEEEECCCC-----------CCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecC--CCCHHHHhccc
Q 047171 327 EIEFKDVDFSYPTR-----------PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIK--KLQLKWLRSQM 393 (1224)
Q Consensus 327 ~i~~~~v~f~y~~~-----------~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~--~~~~~~~r~~i 393 (1224)
-|+++||+|+|++. ++++++||+||||||||||+++|+|+++|++|+|.++|+++. ..+...+|++|
T Consensus 7 ~l~i~~ls~~y~~~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~i 86 (275)
T 3gfo_A 7 ILKVEELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRESI 86 (275)
T ss_dssp EEEEEEEEEECTTSCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHHSE
T ss_pred EEEEEEEEEEECCCCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhCcE
Confidence 37888888888642 256799999999999999999999999999999999999994 33445678899
Q ss_pred EEecCCC--CCCcccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhc
Q 047171 394 GLVNQEP--ILFSTSIKENILIGKP--GASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALI 469 (1224)
Q Consensus 394 ~~v~Q~~--~lf~~ti~~ni~~g~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~ 469 (1224)
|||+|+| .+|..||+||+.|+.. ..+.++..+. +.+.++.+ |++....+.+.+||||||||++|||||+
T Consensus 87 g~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~l~~~--~L~~~~~~~~~~LSgGqkQRv~iAraL~ 159 (275)
T 3gfo_A 87 GIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKR-----VDNALKRT--GIEHLKDKPTHCLSFGQKKRVAIAGVLV 159 (275)
T ss_dssp EEECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHH-----HHHHHHHT--TCGGGTTSBGGGSCHHHHHHHHHHHHHT
T ss_pred EEEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHc--CCchhhcCCcccCCHHHHHHHHHHHHHH
Confidence 9999998 5788899999998632 2233333322 23345555 6666677888999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEeCCcchhhc-cCEEEEEeCceEEeecChHHHHhh
Q 047171 470 RDPKILLLDEATSALDAESERIVQEALDQAS--QGRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGSHDVLMQM 541 (1224)
Q Consensus 470 ~~~~ililDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~i~H~l~~~~~-ad~i~vl~~G~i~~~g~~~~l~~~ 541 (1224)
.+|++||||||||+||+.+...+.+.|+++. +|+|+|+|||+++.+.. ||+|++|++|++++.|++++++..
T Consensus 160 ~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 234 (275)
T 3gfo_A 160 MEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAE 234 (275)
T ss_dssp TCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSGGGGCSEEEEEETTEEEEEECHHHHTHH
T ss_pred cCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhcC
Confidence 9999999999999999999999999998864 38999999999999976 999999999999999999999765
No 71
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=7.7e-43 Score=398.51 Aligned_cols=208 Identities=31% Similarity=0.544 Sum_probs=178.8
Q ss_pred cEEEEeEEEECCCC--------------CCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHH---H
Q 047171 327 EIEFKDVDFSYPTR--------------PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKW---L 389 (1224)
Q Consensus 327 ~i~~~~v~f~y~~~--------------~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~---~ 389 (1224)
-|+++||+++|+.. ++++++||+||||||||||+++|+|+++|++|+|.++|+++..++... +
T Consensus 24 mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~~ 103 (366)
T 3tui_C 24 MIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 103 (366)
T ss_dssp CEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHHH
T ss_pred eEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHH
Confidence 58999999999531 356799999999999999999999999999999999999999988655 4
Q ss_pred hcccEEecCCCCCCcc-cHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHH
Q 047171 390 RSQMGLVNQEPILFST-SIKENILIGKP--GASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIAR 466 (1224)
Q Consensus 390 r~~i~~v~Q~~~lf~~-ti~~ni~~g~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiAR 466 (1224)
|++||||+|++.+|+. ||+||+.++.. ..+.++..+. +.+.++.+ |++......+.+|||||||||+|||
T Consensus 104 r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~-----v~~lL~~v--gL~~~~~~~~~~LSGGqkQRVaIAr 176 (366)
T 3tui_C 104 RRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRR-----VTELLSLV--GLGDKHDSYPSNLSGGQKQRVAIAR 176 (366)
T ss_dssp HTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHH-----HHHHHHHH--TCGGGTTCCTTTSCHHHHHHHHHHH
T ss_pred hCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHH-----HHHHHHHc--CCchHhcCChhhCCHHHHHHHHHHH
Confidence 7889999999999876 99999998632 2233332222 23344444 6666778889999999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEeCCcchhhc-cCEEEEEeCceEEeecChHHHHhh
Q 047171 467 ALIRDPKILLLDEATSALDAESERIVQEALDQAS--QGRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGSHDVLMQM 541 (1224)
Q Consensus 467 al~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~i~H~l~~~~~-ad~i~vl~~G~i~~~g~~~~l~~~ 541 (1224)
||+.+|++||||||||+||+.+...+.+.|+++. .|.|+|+|||+++.+.. ||+|++|++|+|++.|++++++..
T Consensus 177 AL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv~~g~~~ev~~~ 254 (366)
T 3tui_C 177 ALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSH 254 (366)
T ss_dssp HTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEECCBHHHHHSS
T ss_pred HHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 9999999999999999999999999999998864 48999999999999976 999999999999999999999876
No 72
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=1.7e-42 Score=379.95 Aligned_cols=207 Identities=25% Similarity=0.452 Sum_probs=175.3
Q ss_pred EEEEeEEEECCCC----------CCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHH-hcccEEe
Q 047171 328 IEFKDVDFSYPTR----------PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWL-RSQMGLV 396 (1224)
Q Consensus 328 i~~~~v~f~y~~~----------~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~-r~~i~~v 396 (1224)
|+++||+|+|++. +++++++|+||||||||||+++|+|+++|++|+|.++|+++...+.... |++||||
T Consensus 7 l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v 86 (240)
T 1ji0_A 7 LEVQSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALV 86 (240)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTEEEE
T ss_pred EEEEeEEEEECCeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCCEEEE
Confidence 6777777777542 3577999999999999999999999999999999999999988776554 5569999
Q ss_pred cCCCCCCcc-cHHHHHhcCC-CCCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCCE
Q 047171 397 NQEPILFST-SIKENILIGK-PGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKI 474 (1224)
Q Consensus 397 ~Q~~~lf~~-ti~~ni~~g~-~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~i 474 (1224)
+|++.+|+. |++||+.++. +....++..+. +++.++.++ |++...++++.+||||||||++|||||+.+|++
T Consensus 87 ~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~-----~~~~l~~~~-~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~l 160 (240)
T 1ji0_A 87 PEGRRIFPELTVYENLMMGAYNRKDKEGIKRD-----LEWIFSLFP-RLKERLKQLGGTLSGGEQQMLAIGRALMSRPKL 160 (240)
T ss_dssp CSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHH-----HHHHHHHCH-HHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSE
T ss_pred ecCCccCCCCcHHHHHHHhhhcCCCHHHHHHH-----HHHHHHHcc-cHhhHhcCChhhCCHHHHHHHHHHHHHHcCCCE
Confidence 999999987 9999999874 22222222222 234566664 466778888999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEeCCcchhhc-cCEEEEEeCceEEeecChHHHHh
Q 047171 475 LLLDEATSALDAESERIVQEALDQAS-QGRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGSHDVLMQ 540 (1224)
Q Consensus 475 lilDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~i~H~l~~~~~-ad~i~vl~~G~i~~~g~~~~l~~ 540 (1224)
||||||||+||+.+.+.+.+.|+++. +|+|+|+|||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 161 llLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 228 (240)
T 1ji0_A 161 LMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLD 228 (240)
T ss_dssp EEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHT
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHHhc
Confidence 99999999999999999999998865 68999999999988755 99999999999999999999875
No 73
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=4.5e-43 Score=383.03 Aligned_cols=200 Identities=29% Similarity=0.438 Sum_probs=163.9
Q ss_pred EEEeEEEECCCCCCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHH----hcccEEecCCCCCCc
Q 047171 329 EFKDVDFSYPTRPDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWL----RSQMGLVNQEPILFS 404 (1224)
Q Consensus 329 ~~~~v~f~y~~~~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~----r~~i~~v~Q~~~lf~ 404 (1224)
.++||||+. ++++++||+||||||||||+++|+|+++|++|+|.++|+++..++...+ |++||||+|+|.+|+
T Consensus 20 ~L~~isl~i---~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~ 96 (235)
T 3tif_A 20 ALKNVNLNI---KEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIP 96 (235)
T ss_dssp EEEEEEEEE---CTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCCT
T ss_pred eEEeeeEEE---cCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHhhccEEEEecCCccCC
Confidence 455666654 3577999999999999999999999999999999999999999887653 457999999999998
Q ss_pred c-cHHHHHhcCC-----CCCCHHHHHHHHHHhcHHHHHHhcccccccc-ccCCCCCCChHHHHHHHHHHHhccCCCEEEE
Q 047171 405 T-SIKENILIGK-----PGASMETVVKAAQAANVHDFIMKLNDGYETK-VGQFGVQLSGGQKQRIAIARALIRDPKILLL 477 (1224)
Q Consensus 405 ~-ti~~ni~~g~-----~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~-~~~~g~~LSgGq~qriaiARal~~~~~ilil 477 (1224)
. ||+||+.++. .....++..+ .+.+.+..+ |+... ..+.+.+||||||||++|||||+.+|++|||
T Consensus 97 ~~tv~enl~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llll 169 (235)
T 3tif_A 97 LLTALENVELPLIFKYRGAMSGEERRK-----RALECLKMA--ELEERFANHKPNQLSGGQQQRVAIARALANNPPIILA 169 (235)
T ss_dssp TSCHHHHHHHHHHTCSSSCCCHHHHHH-----HHHHHHHHT--TCCGGGTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEE
T ss_pred CCcHHHHHHHHHHhhhccCCCHHHHHH-----HHHHHHHHC--CCChhhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 7 9999998742 1122222221 122334444 44443 3778899999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHc-C-CCeEEEEeCCcchhhccCEEEEEeCceEEeecChHHH
Q 047171 478 DEATSALDAESERIVQEALDQAS-Q-GRTMIIIAHRLSTIRKADLIGVLQSGRVIESGSHDVL 538 (1224)
Q Consensus 478 DE~ts~lD~~~~~~i~~~l~~~~-~-~~t~i~i~H~l~~~~~ad~i~vl~~G~i~~~g~~~~l 538 (1224)
|||||+||+.++..+.+.++++. + |+|+|+|||+++.++.||+|++|++|+|++.|+.+++
T Consensus 170 DEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~d~i~~l~~G~i~~~~~~~~~ 232 (235)
T 3tif_A 170 DQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKLRGF 232 (235)
T ss_dssp ESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHTTSSEEEEEETTEEEEEEECC--
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHhCCEEEEEECCEEEEEcChhhh
Confidence 99999999999999999998874 3 8999999999997777999999999999999887665
No 74
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=7.4e-43 Score=385.03 Aligned_cols=200 Identities=26% Similarity=0.405 Sum_probs=171.5
Q ss_pred cEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcce
Q 047171 977 FIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCI 1056 (1224)
Q Consensus 977 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i 1056 (1224)
.|+++||+++|+. +.++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|. +|+++
T Consensus 4 ~l~i~~l~~~y~~--~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~-------------~~~~i 68 (253)
T 2nq2_C 4 ALSVENLGFYYQA--ENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIE-------------VYQSI 68 (253)
T ss_dssp EEEEEEEEEEETT--TTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEE-------------ECSCE
T ss_pred eEEEeeEEEEeCC--CCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE-------------EeccE
Confidence 4899999999951 24699999999999999999999999999999999999999999998 35789
Q ss_pred EEEecCCCCC-cccHHHHHccCCCC-------CCH---HHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHH
Q 047171 1057 ALVSQEPTLF-AGTIRQNIVYGKEV-------ATE---AEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRI 1125 (1224)
Q Consensus 1057 ~~V~Qdp~LF-~gTIreNl~~~~~~-------~~d---eei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRl 1125 (1224)
+||||+|.+| ..|++||+.++... ... +++.++++..++ +........+||||||||+
T Consensus 69 ~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LSgGq~qrv 137 (253)
T 2nq2_C 69 GFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNL-----------THLAKREFTSLSGGQRQLI 137 (253)
T ss_dssp EEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTC-----------GGGTTSBGGGSCHHHHHHH
T ss_pred EEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCC-----------hHHhcCChhhCCHHHHHHH
Confidence 9999999887 67999999886311 122 234444444443 3334445668999999999
Q ss_pred HHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhh-hcCEEEEEeCCEEEEecChhHHh
Q 047171 1126 ALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMV--GRTCVVVAHRLSTIQ-KADNIVVIKNGKVVEQGTQSSLL 1202 (1224)
Q Consensus 1126 aLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~-~aD~I~vl~~G~Ive~Gt~~eLl 1202 (1224)
+|||||+++|+|||||||||+||+.+.+.+.+.|+++.+ |+|+|+|||+++.+. .||+|++|++|+ ++.|++++++
T Consensus 138 ~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~-~~~g~~~~~~ 216 (253)
T 2nq2_C 138 LIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQN-FKFGETRNIL 216 (253)
T ss_dssp HHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHCSEEEEEETTE-EEEEEHHHHC
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCe-EecCCHHHHh
Confidence 999999999999999999999999999999999998753 899999999999985 599999999999 9999999987
Q ss_pred h
Q 047171 1203 S 1203 (1224)
Q Consensus 1203 ~ 1203 (1224)
+
T Consensus 217 ~ 217 (253)
T 2nq2_C 217 T 217 (253)
T ss_dssp C
T ss_pred C
Confidence 5
No 75
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=5.1e-42 Score=394.42 Aligned_cols=206 Identities=29% Similarity=0.441 Sum_probs=174.7
Q ss_pred EEEEeEEEECCCC----------CCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcccEEec
Q 047171 328 IEFKDVDFSYPTR----------PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVN 397 (1224)
Q Consensus 328 i~~~~v~f~y~~~----------~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~ 397 (1224)
|+++||+++|++. +++++++|+||||||||||+++|+|+++|++|+|.++|+++...++. ++.||||+
T Consensus 4 l~~~~l~~~yg~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~--~r~ig~Vf 81 (381)
T 3rlf_A 4 VQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPA--ERGVGMVF 81 (381)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGG--GSCEEEEC
T ss_pred EEEEeEEEEECCEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHH--HCCEEEEe
Confidence 5666666666532 36779999999999999999999999999999999999999887765 46799999
Q ss_pred CCCCCCcc-cHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCCE
Q 047171 398 QEPILFST-SIKENILIGKP--GASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKI 474 (1224)
Q Consensus 398 Q~~~lf~~-ti~~ni~~g~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~i 474 (1224)
|++.||+. ||+|||.|+.. ..+.++..+ .+.+.++.+ |++.....++.+|||||||||+|||||+.+|++
T Consensus 82 Q~~~l~p~ltV~eni~~~~~~~~~~~~~~~~-----~v~~~l~~~--~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~l 154 (381)
T 3rlf_A 82 QSYALYPHLSVAENMSFGLKLAGAKKEVINQ-----RVNQVAEVL--QLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSV 154 (381)
T ss_dssp TTCCCCTTSCHHHHHTHHHHHTTCCHHHHHH-----HHHHHHHHT--TCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCSE
T ss_pred cCCcCCCCCCHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CCchhhcCChhHCCHHHHHHHHHHHHHHcCCCE
Confidence 99999976 99999998742 223333322 223445555 666677888999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEeCCcchhhc-cCEEEEEeCceEEeecChHHHHhhc
Q 047171 475 LLLDEATSALDAESERIVQEALDQAS--QGRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGSHDVLMQMN 542 (1224)
Q Consensus 475 lilDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~i~H~l~~~~~-ad~i~vl~~G~i~~~g~~~~l~~~~ 542 (1224)
||||||||+||+.++..+.+.|+++. .|.|+|+|||+++++.. ||+|++|++|+|++.|+++|+...+
T Consensus 155 LLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~~l~~~p 225 (381)
T 3rlf_A 155 FLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYP 225 (381)
T ss_dssp EEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCC
T ss_pred EEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEeCHHHHHhCC
Confidence 99999999999999999999998864 38999999999999876 9999999999999999999998763
No 76
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=6.4e-42 Score=391.16 Aligned_cols=207 Identities=29% Similarity=0.488 Sum_probs=170.8
Q ss_pred EEEEeEEEECCCC----------CCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCC--CHHHHhcccEE
Q 047171 328 IEFKDVDFSYPTR----------PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKL--QLKWLRSQMGL 395 (1224)
Q Consensus 328 i~~~~v~f~y~~~----------~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~--~~~~~r~~i~~ 395 (1224)
|+++||+++|++. +++++++|+||||||||||+++|+|+++|++|+|.++|+++.+. .....+++|||
T Consensus 5 l~i~~ls~~y~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~ig~ 84 (359)
T 3fvq_A 5 LHIGHLSKSFQNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRLGY 84 (359)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSCCEE
T ss_pred EEEEeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCCEEE
Confidence 6666777766532 35779999999999999999999999999999999999998321 22345678999
Q ss_pred ecCCCCCCcc-cHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCC
Q 047171 396 VNQEPILFST-SIKENILIGKPG--ASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDP 472 (1224)
Q Consensus 396 v~Q~~~lf~~-ti~~ni~~g~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~ 472 (1224)
|+|++.+|+. ||+|||.|+... ...++..+ .+.+.++.+ |++.....++.+|||||||||+|||||+.+|
T Consensus 85 vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~-----~v~~~l~~~--gL~~~~~r~~~~LSGGq~QRValArAL~~~P 157 (359)
T 3fvq_A 85 LVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQ-----RIEAMLELT--GISELAGRYPHELSGGQQQRAALARALAPDP 157 (359)
T ss_dssp ECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHH-----HHHHHHHHH--TCGGGTTSCGGGSCHHHHHHHHHHHHHTTCC
T ss_pred EeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHH-----HHHHHHHHc--CCchHhcCChhhCCHHHHHHHHHHHHHHcCC
Confidence 9999999975 999999998532 12222221 122334444 6666778888999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHH--cCCCeEEEEeCCcchhhc-cCEEEEEeCceEEeecChHHHHhh
Q 047171 473 KILLLDEATSALDAESERIVQEALDQA--SQGRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGSHDVLMQM 541 (1224)
Q Consensus 473 ~ililDE~ts~lD~~~~~~i~~~l~~~--~~~~t~i~i~H~l~~~~~-ad~i~vl~~G~i~~~g~~~~l~~~ 541 (1224)
++||||||||+||+.+...+.+.+.+. ..|+|+|+|||+++++.. ||||++|++|+|++.|+++|+...
T Consensus 158 ~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~el~~~ 229 (359)
T 3fvq_A 158 ELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRILQTASPHELYRQ 229 (359)
T ss_dssp SEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEEeCHHHHHhC
Confidence 999999999999999999998877654 358999999999999876 999999999999999999999876
No 77
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=1.3e-41 Score=376.09 Aligned_cols=208 Identities=33% Similarity=0.504 Sum_probs=175.9
Q ss_pred cEEEEeEEEECCCC----------CCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecC--CCCHHHHhcccE
Q 047171 327 EIEFKDVDFSYPTR----------PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIK--KLQLKWLRSQMG 394 (1224)
Q Consensus 327 ~i~~~~v~f~y~~~----------~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~--~~~~~~~r~~i~ 394 (1224)
-|+++||+|+|++. ++++++||+||||||||||+++|+|+++|++|+|.++|+++. ..+...+|++||
T Consensus 24 ~l~i~~l~~~y~~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~i~ 103 (263)
T 2olj_A 24 MIDVHQLKKSFGSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEVG 103 (263)
T ss_dssp SEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHHHEE
T ss_pred eEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhCcEE
Confidence 48888888888642 367799999999999999999999999999999999999985 334556788899
Q ss_pred EecCCCCCCcc-cHHHHHhcCC---CCCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhcc
Q 047171 395 LVNQEPILFST-SIKENILIGK---PGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIR 470 (1224)
Q Consensus 395 ~v~Q~~~lf~~-ti~~ni~~g~---~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~ 470 (1224)
||+|++.+|+. ||+||+.++. ...+.++.. ..+.+.++.+ |++......+.+||||||||++|||||+.
T Consensus 104 ~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~L~~~~~~~~~~LSgGqkQRv~lAraL~~ 176 (263)
T 2olj_A 104 MVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAE-----AKAMELLDKV--GLKDKAHAYPDSLSGGQAQRVAIARALAM 176 (263)
T ss_dssp EECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHH-----HHHHHHHHHT--TCGGGTTSCGGGSCHHHHHHHHHHHHHTT
T ss_pred EEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHH-----HHHHHHHHHC--CCchHhcCChhhCCHHHHHHHHHHHHHHC
Confidence 99999999876 9999998852 112222211 1233455555 66666778889999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEeCCcchhhc-cCEEEEEeCceEEeecChHHHHhh
Q 047171 471 DPKILLLDEATSALDAESERIVQEALDQAS-QGRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGSHDVLMQM 541 (1224)
Q Consensus 471 ~~~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~i~H~l~~~~~-ad~i~vl~~G~i~~~g~~~~l~~~ 541 (1224)
+|++||||||||+||+.+.+.+.+.|+++. +|+|+|+|||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 177 ~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
T 2olj_A 177 EPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFDR 249 (263)
T ss_dssp CCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 999999999999999999999999998864 58999999999999875 999999999999999999999764
No 78
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=6.6e-42 Score=379.97 Aligned_cols=208 Identities=25% Similarity=0.381 Sum_probs=174.1
Q ss_pred cEEEEeEEEECCCC----------CCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcccEEe
Q 047171 327 EIEFKDVDFSYPTR----------PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLV 396 (1224)
Q Consensus 327 ~i~~~~v~f~y~~~----------~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v 396 (1224)
-|+++||+++|++. ++++++||+||||||||||+++|+|+++|++|+|.++|+++...+...+++.++||
T Consensus 11 ~l~~~~l~~~~~~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~~v 90 (266)
T 4g1u_C 11 LLEASHLHYHVQQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRAVM 90 (266)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHEEEE
T ss_pred eEEEEeEEEEeCCeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheEEEE
Confidence 37777777777543 35779999999999999999999999999999999999999999998899999999
Q ss_pred cCCCCC-CcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhcc-----
Q 047171 397 NQEPIL-FSTSIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIR----- 470 (1224)
Q Consensus 397 ~Q~~~l-f~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~----- 470 (1224)
+|++.+ |+.||+||+.++......++..+ .+.+.++.+ |+.........+||||||||++|||||+.
T Consensus 91 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~ 163 (266)
T 4g1u_C 91 RQYSELAFPFSVSEVIQMGRAPYGGSQDRQ-----ALQQVMAQT--DCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQ 163 (266)
T ss_dssp CSCCCCCSCCBHHHHHHGGGTTSCSTTHHH-----HHHHHHHHT--TCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCCSS
T ss_pred ecCCccCCCCCHHHHHHhhhhhcCcHHHHH-----HHHHHHHHc--CChhHhcCCcccCCHHHHHHHHHHHHHhcccccC
Confidence 999977 56799999998753221111111 122333444 45555666778999999999999999999
Q ss_pred -CCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-C-CCeEEEEeCCcchhhc-cCEEEEEeCceEEeecChHHHHhh
Q 047171 471 -DPKILLLDEATSALDAESERIVQEALDQAS-Q-GRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGSHDVLMQM 541 (1224)
Q Consensus 471 -~~~ililDE~ts~lD~~~~~~i~~~l~~~~-~-~~t~i~i~H~l~~~~~-ad~i~vl~~G~i~~~g~~~~l~~~ 541 (1224)
+|++||||||||+||+.++..+.+.|+++. + ++|+|+|||+++.+.. ||+|++|++|++++.|++++++..
T Consensus 164 ~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~ 238 (266)
T 4g1u_C 164 PTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKLVACGTPEEVLNA 238 (266)
T ss_dssp CCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHCCH
T ss_pred CCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEEcCHHHHhCc
Confidence 999999999999999999999999998864 3 5799999999999875 999999999999999999998753
No 79
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=2.2e-41 Score=375.19 Aligned_cols=208 Identities=22% Similarity=0.339 Sum_probs=174.1
Q ss_pred EEEEeEEEECCCC----------CCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCH-HHHhcccEEe
Q 047171 328 IEFKDVDFSYPTR----------PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQL-KWLRSQMGLV 396 (1224)
Q Consensus 328 i~~~~v~f~y~~~----------~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~-~~~r~~i~~v 396 (1224)
|+++||+|+|++. +++++++|+||||||||||+++|+|+++|++|+|.++|+++...+. ...|++||||
T Consensus 8 l~i~~l~~~y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v 87 (257)
T 1g6h_A 8 LRTENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVRT 87 (257)
T ss_dssp EEEEEEEEEETTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTEEEC
T ss_pred EEEeeeEEEECCEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEEE
Confidence 7888888888642 3577999999999999999999999999999999999999987764 3457789999
Q ss_pred cCCCCCCcc-cHHHHHhcCCCC--CCHHH--------HHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHH
Q 047171 397 NQEPILFST-SIKENILIGKPG--ASMET--------VVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIA 465 (1224)
Q Consensus 397 ~Q~~~lf~~-ti~~ni~~g~~~--~~~~~--------~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiA 465 (1224)
+|++.+|+. ||+||+.++... ..... .........+.+.++.+ |++....+++.+||||||||++||
T Consensus 88 ~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LSgGqkQrv~iA 165 (257)
T 1g6h_A 88 FQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFL--KLSHLYDRKAGELSGGQMKLVEIG 165 (257)
T ss_dssp CCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHT--TCGGGTTSBGGGSCHHHHHHHHHH
T ss_pred ccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHc--CCchhhCCCchhCCHHHHHHHHHH
Confidence 999998864 999999986421 11000 00011122345566766 777778888999999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEeCCcchhhc-cCEEEEEeCceEEeecChHH
Q 047171 466 RALIRDPKILLLDEATSALDAESERIVQEALDQAS-QGRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGSHDV 537 (1224)
Q Consensus 466 Ral~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~i~H~l~~~~~-ad~i~vl~~G~i~~~g~~~~ 537 (1224)
|||+.+|++||||||||+||+.+.+.+.+.|+++. +|+|+|+|||+++.+.. ||+|++|++|++++.|++++
T Consensus 166 raL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~ 239 (257)
T 1g6h_A 166 RALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEE 239 (257)
T ss_dssp HHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEEEEESHH
T ss_pred HHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEeCHHH
Confidence 99999999999999999999999999999998864 48999999999999865 99999999999999999998
No 80
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=2.2e-42 Score=370.27 Aligned_cols=194 Identities=20% Similarity=0.321 Sum_probs=165.5
Q ss_pred cEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcce
Q 047171 977 FIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCI 1056 (1224)
Q Consensus 977 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i 1056 (1224)
.|+++||+++|+ + ++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++. .+|+++
T Consensus 10 ~l~~~~ls~~y~---~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~-----~~~~~i 80 (214)
T 1sgw_A 10 KLEIRDLSVGYD---K-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT-----KVKGKI 80 (214)
T ss_dssp EEEEEEEEEESS---S-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGG-----GGGGGE
T ss_pred eEEEEEEEEEeC---C-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhh-----hhcCcE
Confidence 699999999995 3 6999999999999999999999999999999999999999999999999886 368899
Q ss_pred EEEecCCCCCcc-cHHHHHccCCC----CCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHH
Q 047171 1057 ALVSQEPTLFAG-TIRQNIVYGKE----VATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAV 1131 (1224)
Q Consensus 1057 ~~V~Qdp~LF~g-TIreNl~~~~~----~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAl 1131 (1224)
+||||+|.+|.+ |++||+.++.. ...++++.++++.. |++.. ...+.+||||||||++|||||
T Consensus 81 ~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~-----------gl~~~-~~~~~~LSgGqkqrv~laraL 148 (214)
T 1sgw_A 81 FFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESV-----------EVLDL-KKKLGELSQGTIRRVQLASTL 148 (214)
T ss_dssp EEECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHT-----------TCCCT-TSBGGGSCHHHHHHHHHHHHT
T ss_pred EEEeCCCcCCCCCCHHHHHHHHHHhcCCchHHHHHHHHHHHc-----------CCCcC-CCChhhCCHHHHHHHHHHHHH
Confidence 999999999876 99999987521 12244555554443 45445 566778999999999999999
Q ss_pred ccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh-cCEEEEEeCCEE
Q 047171 1132 LKNPMILLLDEATSALDSASENLVQEALEKMM-VGRTCVVVAHRLSTIQK-ADNIVVIKNGKV 1192 (1224)
Q Consensus 1132 l~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-aD~I~vl~~G~I 1192 (1224)
+++|++||||||||+||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||+|+ +.+|+|
T Consensus 149 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~v~-~~~~~~ 210 (214)
T 1sgw_A 149 LVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELSYCDVNENLH-KYSTKI 210 (214)
T ss_dssp TSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCTTSSEEEEGG-GGBC--
T ss_pred HhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEE-EeCCcc
Confidence 99999999999999999999999999998875 47899999999999987 66665 555766
No 81
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=2.4e-41 Score=369.56 Aligned_cols=199 Identities=31% Similarity=0.484 Sum_probs=168.8
Q ss_pred EEeEEEECCCCCCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcccEEecCCCCCCcc-cHH
Q 047171 330 FKDVDFSYPTRPDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFST-SIK 408 (1224)
Q Consensus 330 ~~~v~f~y~~~~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~-ti~ 408 (1224)
++||||+.+ + ++++|+||||||||||+++|+|+++|++|+|.++|+++...+ ..|++||||+|++.+|+. |++
T Consensus 15 l~~isl~i~---~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~--~~~~~i~~v~q~~~l~~~ltv~ 88 (240)
T 2onk_A 15 RLNVDFEMG---R-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLP--PERRGIGFVPQDYALFPHLSVY 88 (240)
T ss_dssp EEEEEEEEC---S-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSC--TTTSCCBCCCSSCCCCTTSCHH
T ss_pred EeeeEEEEC---C-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCc--hhhCcEEEEcCCCccCCCCcHH
Confidence 667777653 4 699999999999999999999999999999999999987643 346789999999999876 999
Q ss_pred HHHhcCCCCCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHH
Q 047171 409 ENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAES 488 (1224)
Q Consensus 409 ~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~ililDE~ts~lD~~~ 488 (1224)
||+.++........ . ...+.+.++.+ |++........+||||||||++|||||+.+|++||||||||+||+.+
T Consensus 89 enl~~~~~~~~~~~---~--~~~~~~~l~~~--~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPts~LD~~~ 161 (240)
T 2onk_A 89 RNIAYGLRNVERVE---R--DRRVREMAEKL--GIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKT 161 (240)
T ss_dssp HHHHTTCTTSCHHH---H--HHHHHHHHHTT--TCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHH
T ss_pred HHHHHHHHHcCCch---H--HHHHHHHHHHc--CCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHH
Confidence 99999753222111 0 22234556666 66666777889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHc--CCCeEEEEeCCcchhhc-cCEEEEEeCceEEeecChHHHHhh
Q 047171 489 ERIVQEALDQAS--QGRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGSHDVLMQM 541 (1224)
Q Consensus 489 ~~~i~~~l~~~~--~~~t~i~i~H~l~~~~~-ad~i~vl~~G~i~~~g~~~~l~~~ 541 (1224)
++.+.+.|+++. .|+|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 162 ~~~~~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 217 (240)
T 2onk_A 162 KGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSA 217 (240)
T ss_dssp HHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 999999998864 38999999999998865 999999999999999999998764
No 82
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=2.5e-41 Score=372.81 Aligned_cols=208 Identities=24% Similarity=0.397 Sum_probs=175.0
Q ss_pred ccEEEEeEEEECCCC----------CCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcccEE
Q 047171 326 GEIEFKDVDFSYPTR----------PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGL 395 (1224)
Q Consensus 326 ~~i~~~~v~f~y~~~----------~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 395 (1224)
+.|+++||+++|++. +++++++|+||||||||||+++|+|+++|++|+|.++|+++.. ....+|++|||
T Consensus 14 ~~l~i~~l~~~y~~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~-~~~~~~~~i~~ 92 (256)
T 1vpl_A 14 GAVVVKDLRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHEVRKLISY 92 (256)
T ss_dssp CCEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTT-CHHHHHTTEEE
T ss_pred CeEEEEEEEEEECCEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCc-cHHHHhhcEEE
Confidence 358888888888642 3677999999999999999999999999999999999999876 45667889999
Q ss_pred ecCCCCCCcc-cHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCC
Q 047171 396 VNQEPILFST-SIKENILIGKP--GASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDP 472 (1224)
Q Consensus 396 v~Q~~~lf~~-ti~~ni~~g~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~ 472 (1224)
|+|++.+|+. |++||+.++.. ....++..+ .+.+.++.+ |++.....++.+||||||||++|||||+.+|
T Consensus 93 v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~-----~~~~~l~~~--gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p 165 (256)
T 1vpl_A 93 LPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEE-----MVERATEIA--GLGEKIKDRVSTYSKGMVRKLLIARALMVNP 165 (256)
T ss_dssp ECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHH-----HHHHHHHHH--CCGGGGGSBGGGCCHHHHHHHHHHHHHTTCC
T ss_pred EcCCCCCCCCCcHHHHHHHHHHHcCCChHHHHH-----HHHHHHHHC--CCchHhcCChhhCCHHHHHHHHHHHHHHcCC
Confidence 9999998876 99999987521 122222111 123344444 5666667788899999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEeCCcchhhc-cCEEEEEeCceEEeecChHHHHhh
Q 047171 473 KILLLDEATSALDAESERIVQEALDQAS-QGRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGSHDVLMQM 541 (1224)
Q Consensus 473 ~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~i~H~l~~~~~-ad~i~vl~~G~i~~~g~~~~l~~~ 541 (1224)
++||||||||+||+.+...+.+.|+++. +|+|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 166 ~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 236 (256)
T 1vpl_A 166 RLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKER 236 (256)
T ss_dssp SEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHHH
T ss_pred CEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHCCEEEEEECCEEEEecCHHHHHHh
Confidence 9999999999999999999999998864 58999999999999987 999999999999999999998753
No 83
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=3.8e-41 Score=386.44 Aligned_cols=205 Identities=30% Similarity=0.474 Sum_probs=171.5
Q ss_pred EEEEeEEEECCCC----------CCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcccEEec
Q 047171 328 IEFKDVDFSYPTR----------PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVN 397 (1224)
Q Consensus 328 i~~~~v~f~y~~~----------~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~ 397 (1224)
|+++||+++|++. +++++++|+||||||||||+++|+|+++|++|+|.++|+++.+.+.. +++||||+
T Consensus 4 l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~ig~v~ 81 (359)
T 2yyz_A 4 IRVVNLKKYFGKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPK--YREVGMVF 81 (359)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GTTEEEEC
T ss_pred EEEEEEEEEECCEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChh--hCcEEEEe
Confidence 5555666655421 35779999999999999999999999999999999999999877653 57899999
Q ss_pred CCCCCCcc-cHHHHHhcCCCCC--CHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCCE
Q 047171 398 QEPILFST-SIKENILIGKPGA--SMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKI 474 (1224)
Q Consensus 398 Q~~~lf~~-ti~~ni~~g~~~~--~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~i 474 (1224)
|++.+|+. ||+|||.|+.... +.++. ...+.+.++.+ |++.....+..+||||||||++|||||+.+|++
T Consensus 82 Q~~~l~~~ltv~eni~~~~~~~~~~~~~~-----~~~v~~~l~~~--~L~~~~~r~~~~LSgGq~QRvalArAL~~~P~l 154 (359)
T 2yyz_A 82 QNYALYPHMTVFENIAFPLRARRISKDEV-----EKRVVEIARKL--LIDNLLDRKPTQLSGGQQQRVALARALVKQPKV 154 (359)
T ss_dssp SSCCCCTTSCHHHHHHGGGSSSCSHHHHT-----THHHHHHHHHT--TCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSE
T ss_pred cCcccCCCCCHHHHHHHHHHhcCCCHHHH-----HHHHHHHHHHc--CCchHhcCChhhCCHHHHHHHHHHHHHHcCCCE
Confidence 99999976 9999999975321 11111 11233445555 666667788899999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEeCCcchhhc-cCEEEEEeCceEEeecChHHHHhh
Q 047171 475 LLLDEATSALDAESERIVQEALDQAS--QGRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGSHDVLMQM 541 (1224)
Q Consensus 475 lilDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~i~H~l~~~~~-ad~i~vl~~G~i~~~g~~~~l~~~ 541 (1224)
||||||||+||+.+.+.+.+.|+++. .|.|+|+|||+++.+.. ||+|++|++|+|++.|+++|+.+.
T Consensus 155 LLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~~~ 224 (359)
T 2yyz_A 155 LLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDEVYDS 224 (359)
T ss_dssp EEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred EEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 99999999999999999999998864 38999999999999865 999999999999999999999875
No 84
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=100.00 E-value=2.6e-41 Score=378.77 Aligned_cols=201 Identities=25% Similarity=0.423 Sum_probs=164.7
Q ss_pred ccEEEEeEEEECCC--------CCCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcccEEec
Q 047171 326 GEIEFKDVDFSYPT--------RPDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVN 397 (1224)
Q Consensus 326 ~~i~~~~v~f~y~~--------~~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~ 397 (1224)
+.|+++||+|.+.. -++++++||+||||||||||+++|+|+++|++|+|.++| +|+||+
T Consensus 39 ~~l~~~~l~~~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g-------------~i~~v~ 105 (290)
T 2bbs_A 39 DSLSFSNFSLLGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------RISFCS 105 (290)
T ss_dssp -----------CCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCS-------------CEEEEC
T ss_pred ceEEEEEEEEcCceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC-------------EEEEEe
Confidence 35777777775421 136779999999999999999999999999999999998 499999
Q ss_pred CCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCCEEEE
Q 047171 398 QEPILFSTSIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLL 477 (1224)
Q Consensus 398 Q~~~lf~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~ilil 477 (1224)
|++.+|++||+||+. +.. .....+.++++..++.+++..+|.++++.+++++.+||||||||++|||||+.+|++|||
T Consensus 106 Q~~~l~~~tv~enl~-~~~-~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllL 183 (290)
T 2bbs_A 106 QNSWIMPGTIKENII-GVS-YDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLL 183 (290)
T ss_dssp SSCCCCSSBHHHHHH-TTC-CCHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSEEEE
T ss_pred CCCccCcccHHHHhh-Ccc-cchHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCEEEE
Confidence 999999999999998 542 234445556677788888999999999999999999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHH-HHHcCCCeEEEEeCCcchhhccCEEEEEeCceEEeecChHHHHhh
Q 047171 478 DEATSALDAESERIVQEAL-DQASQGRTMIIIAHRLSTIRKADLIGVLQSGRVIESGSHDVLMQM 541 (1224)
Q Consensus 478 DE~ts~lD~~~~~~i~~~l-~~~~~~~t~i~i~H~l~~~~~ad~i~vl~~G~i~~~g~~~~l~~~ 541 (1224)
|||||+||+.++..+.+.+ +++.+|+|+|+|||+++.+..||+|++|++|++++.|+++++...
T Consensus 184 DEPts~LD~~~~~~i~~~ll~~~~~~~tviivtHd~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 248 (290)
T 2bbs_A 184 DSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNL 248 (290)
T ss_dssp ESTTTTCCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHHSSEEEEEETTEEEEEECHHHHHHH
T ss_pred ECCcccCCHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHcCCEEEEEECCeEEEeCCHHHHhhh
Confidence 9999999999999998864 444568999999999999888999999999999999999998764
No 85
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=2.1e-41 Score=367.29 Aligned_cols=200 Identities=25% Similarity=0.418 Sum_probs=165.9
Q ss_pred EEEEeEEEECCCC----------CCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHH---Hh-ccc
Q 047171 328 IEFKDVDFSYPTR----------PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKW---LR-SQM 393 (1224)
Q Consensus 328 i~~~~v~f~y~~~----------~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~---~r-~~i 393 (1224)
|+++|++++|++. +++++++|+||||||||||+++|+|+++|++|+|.++|+++...+... +| ++|
T Consensus 5 l~~~~l~~~y~~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i 84 (224)
T 2pcj_A 5 LRAENIKKVIRGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRNRKL 84 (224)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHHHHE
T ss_pred EEEEeEEEEECCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHhCcE
Confidence 5666666666432 257799999999999999999999999999999999999998877543 34 689
Q ss_pred EEecCCCCCCcc-cHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhcc
Q 047171 394 GLVNQEPILFST-SIKENILIGKP--GASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIR 470 (1224)
Q Consensus 394 ~~v~Q~~~lf~~-ti~~ni~~g~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~ 470 (1224)
|||+|++.+|+. |++||+.++.. ....++. ...+.+.++.+ |++.....++.+||||||||++|||||+.
T Consensus 85 ~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~laral~~ 157 (224)
T 2pcj_A 85 GFVFQFHYLIPELTALENVIVPMLKMGKPKKEA-----KERGEYLLSEL--GLGDKLSRKPYELSGGEQQRVAIARALAN 157 (224)
T ss_dssp EEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHH-----HHHHHHHHHHT--TCTTCTTCCGGGSCHHHHHHHHHHHHTTT
T ss_pred EEEecCcccCCCCCHHHHHHhHHHHcCCCHHHH-----HHHHHHHHHHc--CCchhhhCChhhCCHHHHHHHHHHHHHHc
Confidence 999999998865 99999988531 1121111 11234455655 66666778889999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEeCCcchhhccCEEEEEeCceEEeecC
Q 047171 471 DPKILLLDEATSALDAESERIVQEALDQAS-QGRTMIIIAHRLSTIRKADLIGVLQSGRVIESGS 534 (1224)
Q Consensus 471 ~~~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~i~H~l~~~~~ad~i~vl~~G~i~~~g~ 534 (1224)
+|++||||||||+||+.+++.+.+.++++. +|+|+|+|||+++.+..||+|++|++|++++.|+
T Consensus 158 ~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~d~v~~l~~G~i~~~g~ 222 (224)
T 2pcj_A 158 EPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERELAELTHRTLEMKDGKVVGEIT 222 (224)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHTTSSEEEEEETTEEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhCCEEEEEECCEEEEEee
Confidence 999999999999999999999999998864 5899999999999886799999999999999886
No 86
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=4.8e-41 Score=372.85 Aligned_cols=207 Identities=31% Similarity=0.534 Sum_probs=171.3
Q ss_pred EEEEeEEEECCCC----------CCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCC----------CCH-
Q 047171 328 IEFKDVDFSYPTR----------PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKK----------LQL- 386 (1224)
Q Consensus 328 i~~~~v~f~y~~~----------~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~----------~~~- 386 (1224)
|+++||+++|++. ++++++||+||||||||||+++|+|+++|++|+|.++|+++.. ++.
T Consensus 7 l~i~~l~~~y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~ 86 (262)
T 1b0u_A 7 LHVIDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKN 86 (262)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESCHH
T ss_pred EEEeeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccccChh
Confidence 5666666666432 3577999999999999999999999999999999999999862 443
Q ss_pred --HHHhcccEEecCCCCCCcc-cHHHHHhcCC---CCCCHHHHHHHHHHhcHHHHHHhcccccccc-ccCCCCCCChHHH
Q 047171 387 --KWLRSQMGLVNQEPILFST-SIKENILIGK---PGASMETVVKAAQAANVHDFIMKLNDGYETK-VGQFGVQLSGGQK 459 (1224)
Q Consensus 387 --~~~r~~i~~v~Q~~~lf~~-ti~~ni~~g~---~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~-~~~~g~~LSgGq~ 459 (1224)
..+|++||||+|++.+|+. ||+||+.++. .....++.. ..+.+.++.+ |++.. ...++.+||||||
T Consensus 87 ~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~L~~~~~~~~~~~LSgGq~ 159 (262)
T 1b0u_A 87 QLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDAR-----ERALKYLAKV--GIDERAQGKYPVHLSGGQQ 159 (262)
T ss_dssp HHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHH-----HHHHHHHHHT--TCCHHHHTSCGGGSCHHHH
T ss_pred hHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHH-----HHHHHHHHHc--CCCchhhcCCcccCCHHHH
Confidence 3467789999999998876 9999998852 112222211 1233455555 56655 6778899999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEeCCcchhhc-cCEEEEEeCceEEeecChHH
Q 047171 460 QRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQAS-QGRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGSHDV 537 (1224)
Q Consensus 460 qriaiARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~i~H~l~~~~~-ad~i~vl~~G~i~~~g~~~~ 537 (1224)
||++|||||+.+|++||||||||+||+.+.+.+.+.|+++. +|+|+|+|||+++.+.. ||+|++|++|++++.|++++
T Consensus 160 qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~ 239 (262)
T 1b0u_A 160 QRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQ 239 (262)
T ss_dssp HHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHH
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999998864 58999999999999875 99999999999999999999
Q ss_pred HHhh
Q 047171 538 LMQM 541 (1224)
Q Consensus 538 l~~~ 541 (1224)
+...
T Consensus 240 ~~~~ 243 (262)
T 1b0u_A 240 VFGN 243 (262)
T ss_dssp HHHS
T ss_pred HHhC
Confidence 9764
No 87
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=3.2e-41 Score=387.53 Aligned_cols=205 Identities=32% Similarity=0.494 Sum_probs=172.6
Q ss_pred EEEEeEEEECCCC----------CCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcccEEec
Q 047171 328 IEFKDVDFSYPTR----------PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVN 397 (1224)
Q Consensus 328 i~~~~v~f~y~~~----------~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~ 397 (1224)
|+++||+++|++. +++++++|+||||||||||+++|+|+++|++|+|.++|+++.+.+.. +++||||+
T Consensus 4 l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~ig~v~ 81 (362)
T 2it1_A 4 IKLENIVKKFGNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPK--DRNVGLVF 81 (362)
T ss_dssp EEEEEEEEESSSSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GTTEEEEC
T ss_pred EEEEeEEEEECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHh--HCcEEEEe
Confidence 5666777776532 35779999999999999999999999999999999999999877653 56899999
Q ss_pred CCCCCCcc-cHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCCE
Q 047171 398 QEPILFST-SIKENILIGKP--GASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKI 474 (1224)
Q Consensus 398 Q~~~lf~~-ti~~ni~~g~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~i 474 (1224)
|++.+|+. ||+|||.|+.. ....++.. ..+.+.++.+ |++.....+..+||||||||++|||||+.+|++
T Consensus 82 Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~-----~~v~~~l~~~--~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~l 154 (362)
T 2it1_A 82 QNWALYPHMTVYKNIAFPLELRKAPREEID-----KKVREVAKML--HIDKLLNRYPWQLSGGQQQRVAIARALVKEPEV 154 (362)
T ss_dssp TTCCCCTTSCHHHHHHHHHHHTTCCHHHHH-----HHHHHHHHHT--TCTTCTTCCGGGSCHHHHHHHHHHHHHTTCCSE
T ss_pred cCcccCCCCCHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHc--CCchHhhCChhhCCHHHHHHHHHHHHHHcCCCE
Confidence 99999976 99999998632 12222221 1233445555 666667788899999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEeCCcchhhc-cCEEEEEeCceEEeecChHHHHhh
Q 047171 475 LLLDEATSALDAESERIVQEALDQASQ--GRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGSHDVLMQM 541 (1224)
Q Consensus 475 lilDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~i~H~l~~~~~-ad~i~vl~~G~i~~~g~~~~l~~~ 541 (1224)
||||||||+||+.+...+.+.|+++.+ |+|+|+|||+++.+.. ||+|++|++|+|++.|++++++..
T Consensus 155 LLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~~~~~ 224 (362)
T 2it1_A 155 LLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMADRIAVIREGEILQVGTPDEVYYK 224 (362)
T ss_dssp EEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred EEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 999999999999999999999988643 8999999999999865 999999999999999999999875
No 88
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=5e-41 Score=384.35 Aligned_cols=206 Identities=31% Similarity=0.514 Sum_probs=175.5
Q ss_pred cEEEEeEEEEC-CCC----------CCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcccEE
Q 047171 327 EIEFKDVDFSY-PTR----------PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGL 395 (1224)
Q Consensus 327 ~i~~~~v~f~y-~~~----------~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 395 (1224)
.|+++||+++| ++. +++++++|+||||||||||+++|+|+++|++|+|.++|+++...+. .+++|||
T Consensus 14 ~l~~~~l~~~y~g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~--~~r~ig~ 91 (355)
T 1z47_A 14 TIEFVGVEKIYPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPP--QKRNVGL 91 (355)
T ss_dssp EEEEEEEEECCTTSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCG--GGSSEEE
T ss_pred eEEEEEEEEEEcCCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCCh--hhCcEEE
Confidence 58999999999 543 2567999999999999999999999999999999999999987654 3678999
Q ss_pred ecCCCCCCcc-cHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCC
Q 047171 396 VNQEPILFST-SIKENILIGKP--GASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDP 472 (1224)
Q Consensus 396 v~Q~~~lf~~-ti~~ni~~g~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~ 472 (1224)
|+|++.+|+. ||+|||.|+.. ..+.++.. ..+.+.++.+ |++.....+..+||||||||++|||||+.+|
T Consensus 92 v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~-----~~v~~~l~~~--gL~~~~~r~~~~LSGGq~QRvalArAL~~~P 164 (355)
T 1z47_A 92 VFQNYALFQHMTVYDNVSFGLREKRVPKDEMD-----ARVRELLRFM--RLESYANRFPHELSGGQQQRVALARALAPRP 164 (355)
T ss_dssp ECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHH-----HHHHHHHHHT--TCGGGTTSCGGGSCHHHHHHHHHHHHHTTCC
T ss_pred EecCcccCCCCCHHHHHHHHHHHcCCCHHHHH-----HHHHHHHHHc--CChhHhcCCcccCCHHHHHHHHHHHHHHcCC
Confidence 9999999976 99999998632 12222221 1233445555 6666677888999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEeCCcchhhc-cCEEEEEeCceEEeecChHHHHhh
Q 047171 473 KILLLDEATSALDAESERIVQEALDQAS--QGRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGSHDVLMQM 541 (1224)
Q Consensus 473 ~ililDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~i~H~l~~~~~-ad~i~vl~~G~i~~~g~~~~l~~~ 541 (1224)
++||||||||+||+.+...+.+.|+++. .|+|+|+|||+++.+.. ||+|++|++|+|++.|+++++...
T Consensus 165 ~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~ 236 (355)
T 1z47_A 165 QVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEVYEK 236 (355)
T ss_dssp SEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 9999999999999999999999998864 38999999999999866 999999999999999999999875
No 89
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=7.7e-41 Score=385.76 Aligned_cols=205 Identities=25% Similarity=0.400 Sum_probs=169.7
Q ss_pred EEEEeEEEECCCC----------CCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcccEEec
Q 047171 328 IEFKDVDFSYPTR----------PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVN 397 (1224)
Q Consensus 328 i~~~~v~f~y~~~----------~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~ 397 (1224)
|+++||+++|++. +++++++|+||||||||||+++|+|+++|++|+|.++|+++...+.. +++||||+
T Consensus 12 l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~ig~v~ 89 (372)
T 1v43_A 12 VKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRNISMVF 89 (372)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GGTEEEEE
T ss_pred EEEEEEEEEECCEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChh--hCcEEEEe
Confidence 7788888888542 35779999999999999999999999999999999999999877654 56899999
Q ss_pred CCCCCCcc-cHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCCE
Q 047171 398 QEPILFST-SIKENILIGKPG--ASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKI 474 (1224)
Q Consensus 398 Q~~~lf~~-ti~~ni~~g~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~i 474 (1224)
|++.+|+. ||+|||.|+... .+.++.. ..+.+.++.+ |++.....+..+||||||||+||||||+.+|++
T Consensus 90 Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~-----~~v~~~l~~~--~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~l 162 (372)
T 1v43_A 90 QSYAVWPHMTVYENIAFPLKIKKFPKDEID-----KRVRWAAELL--QIEELLNRYPAQLSGGQRQRVAVARAIVVEPDV 162 (372)
T ss_dssp C------CCCHHHHHHTTCC--CCCHHHHH-----HHHHHHHHHT--TCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSE
T ss_pred cCcccCCCCCHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHc--CChhHhcCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 99999975 999999998542 2232221 1233455555 666677888999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEeCCcchhhc-cCEEEEEeCceEEeecChHHHHhh
Q 047171 475 LLLDEATSALDAESERIVQEALDQASQ--GRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGSHDVLMQM 541 (1224)
Q Consensus 475 lilDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~i~H~l~~~~~-ad~i~vl~~G~i~~~g~~~~l~~~ 541 (1224)
||||||||+||+.+...+.+.|+++.+ |.|+|+|||+++.+.. ||+|++|++|+|++.|+++++...
T Consensus 163 LLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~ 232 (372)
T 1v43_A 163 LLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLR 232 (372)
T ss_dssp EEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHC
T ss_pred EEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 999999999999999999999988642 8999999999999865 999999999999999999999875
No 90
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=4.4e-41 Score=375.60 Aligned_cols=206 Identities=25% Similarity=0.391 Sum_probs=173.8
Q ss_pred cEEEEeEEEECCCC----------CCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecC--CCCHHHHhcccE
Q 047171 327 EIEFKDVDFSYPTR----------PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIK--KLQLKWLRSQMG 394 (1224)
Q Consensus 327 ~i~~~~v~f~y~~~----------~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~--~~~~~~~r~~i~ 394 (1224)
-|+++||+|+|++. +++++++|+||||||||||+++|+|+++|++|+|.++|+++. ..+...+|++||
T Consensus 21 ~l~~~~l~~~y~~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~i~ 100 (279)
T 2ihy_A 21 LIQLDQIGRMKQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQHIG 100 (279)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHTTEE
T ss_pred eEEEEeEEEEECCEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcCcEE
Confidence 48899999999643 357799999999999999999999999999999999999997 777777888999
Q ss_pred EecCCCCC-Ccc--cHHHHHhcCCCC-------CCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHH
Q 047171 395 LVNQEPIL-FST--SIKENILIGKPG-------ASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAI 464 (1224)
Q Consensus 395 ~v~Q~~~l-f~~--ti~~ni~~g~~~-------~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriai 464 (1224)
||+|++.+ |.. ||+||+.++... ...+ . ...+.+.++.+ |++.....++.+||||||||++|
T Consensus 101 ~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~-~-----~~~~~~~l~~~--gl~~~~~~~~~~LSgGqkqRv~l 172 (279)
T 2ihy_A 101 FVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDE-I-----RNEAHQLLKLV--GMSAKAQQYIGYLSTGEKQRVMI 172 (279)
T ss_dssp EECHHHHTTSCTTSBHHHHHHTTC---------CCHH-H-----HHHHHHHHHHT--TCGGGTTSBGGGSCHHHHHHHHH
T ss_pred EEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHH-H-----HHHHHHHHHHc--CChhHhcCChhhCCHHHHHHHHH
Confidence 99999864 544 999999987421 1111 1 11233455555 66666788889999999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeE--EEEeCCcchhhc-cCEEEEEeCceEEeecChHHHHh
Q 047171 465 ARALIRDPKILLLDEATSALDAESERIVQEALDQAS-QGRTM--IIIAHRLSTIRK-ADLIGVLQSGRVIESGSHDVLMQ 540 (1224)
Q Consensus 465 ARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~--i~i~H~l~~~~~-ad~i~vl~~G~i~~~g~~~~l~~ 540 (1224)
||||+.+|++||||||||+||+.+.+.+.+.|+++. +|+|+ |+|||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 173 AraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 252 (279)
T 2ihy_A 173 ARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGAVEDILT 252 (279)
T ss_dssp HHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGGGCCTTCCEEEEEETTEEEEEEEHHHHCS
T ss_pred HHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhc
Confidence 999999999999999999999999999999998864 48999 999999999865 99999999999999999999864
No 91
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=1.2e-40 Score=381.28 Aligned_cols=197 Identities=31% Similarity=0.488 Sum_probs=166.7
Q ss_pred EEEeEEEECCCCCCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcccEEecCCCCCCcc-cH
Q 047171 329 EFKDVDFSYPTRPDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFST-SI 407 (1224)
Q Consensus 329 ~~~~v~f~y~~~~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~-ti 407 (1224)
.++|++|+. +++++++|+||||||||||+++|+|+++|++|+|.++|+++.+.+. .+++||||+|++.+|+. ||
T Consensus 15 ~l~~vsl~i---~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~--~~r~ig~v~Q~~~l~~~ltv 89 (348)
T 3d31_A 15 SLDNLSLKV---ESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSP--EKHDIAFVYQNYSLFPHMNV 89 (348)
T ss_dssp EEEEEEEEE---CTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCH--HHHTCEEECTTCCCCTTSCH
T ss_pred EEeeeEEEE---cCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCch--hhCcEEEEecCcccCCCCCH
Confidence 345555544 3567999999999999999999999999999999999999987654 36789999999999976 99
Q ss_pred HHHHhcCCC---CCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCC
Q 047171 408 KENILIGKP---GASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSAL 484 (1224)
Q Consensus 408 ~~ni~~g~~---~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~ililDE~ts~l 484 (1224)
+|||.|+.. ....+++ .+.++.+ |++.....+..+||||||||++|||||+.+|++||||||||+|
T Consensus 90 ~enl~~~~~~~~~~~~~~v---------~~~l~~~--~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s~L 158 (348)
T 3d31_A 90 KKNLEFGMRMKKIKDPKRV---------LDTARDL--KIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSAL 158 (348)
T ss_dssp HHHHHHHHHHHCCCCHHHH---------HHHHHHT--TCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTS
T ss_pred HHHHHHHHHHcCCCHHHHH---------HHHHHHc--CCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccC
Confidence 999998631 0111223 3344444 5555667788899999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHc--CCCeEEEEeCCcchhhc-cCEEEEEeCceEEeecChHHHHhh
Q 047171 485 DAESERIVQEALDQAS--QGRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGSHDVLMQM 541 (1224)
Q Consensus 485 D~~~~~~i~~~l~~~~--~~~t~i~i~H~l~~~~~-ad~i~vl~~G~i~~~g~~~~l~~~ 541 (1224)
|+.+.+.+.+.|+++. .|+|+|+|||+++.+.. ||+|++|++|+|++.|+++++.+.
T Consensus 159 D~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~~~~~ 218 (348)
T 3d31_A 159 DPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEK 218 (348)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSS
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 9999999999998864 38999999999998865 999999999999999999999875
No 92
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=2.5e-40 Score=368.32 Aligned_cols=196 Identities=27% Similarity=0.497 Sum_probs=164.6
Q ss_pred EEEeEEEECCCCCCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcccEEecCCC--CCCccc
Q 047171 329 EFKDVDFSYPTRPDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEP--ILFSTS 406 (1224)
Q Consensus 329 ~~~~v~f~y~~~~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~--~lf~~t 406 (1224)
.++||||+.+ ++++++|+||||||||||+++|+|+++|++|+|.++|+++... .+|++||||+|+| .+++.|
T Consensus 22 vl~~vsl~i~---~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~---~~~~~i~~v~q~~~~~~~~~t 95 (266)
T 2yz2_A 22 ALENVSLVIN---EGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGY---EIRRNIGIAFQYPEDQFFAER 95 (266)
T ss_dssp EEEEEEEEEC---TTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHH---HHGGGEEEECSSGGGGCCCSS
T ss_pred eeeeeEEEEc---CCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchH---HhhhhEEEEeccchhhcCCCc
Confidence 3555555542 5679999999999999999999999999999999999998642 6678899999996 467789
Q ss_pred HHHHHhcCCCC-----CCHHHHHHHHHHhcHHHHHHhcccccc--ccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeC
Q 047171 407 IKENILIGKPG-----ASMETVVKAAQAANVHDFIMKLNDGYE--TKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDE 479 (1224)
Q Consensus 407 i~~ni~~g~~~-----~~~~~~~~~~~~~~~~~~i~~l~~g~~--t~~~~~g~~LSgGq~qriaiARal~~~~~ililDE 479 (1224)
++||+.++... ...+++.++++.. |++ ........+||||||||++|||||+.+|++|||||
T Consensus 96 v~enl~~~~~~~~~~~~~~~~~~~~l~~~-----------gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDE 164 (266)
T 2yz2_A 96 VFDEVAFAVKNFYPDRDPVPLVKKAMEFV-----------GLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDE 164 (266)
T ss_dssp HHHHHHHTTTTTCTTSCSHHHHHHHHHHT-----------TCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEES
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHc-----------CcCCcccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEcC
Confidence 99999987421 1123344444333 444 44566678999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHc-CCCeEEEEeCCcchhhc-cCEEEEEeCceEEeecChHHHHhh
Q 047171 480 ATSALDAESERIVQEALDQAS-QGRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGSHDVLMQM 541 (1224)
Q Consensus 480 ~ts~lD~~~~~~i~~~l~~~~-~~~t~i~i~H~l~~~~~-ad~i~vl~~G~i~~~g~~~~l~~~ 541 (1224)
|||+||+.+.+.+.+.|+++. +|+|+|+|||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 165 Pts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 228 (266)
T 2yz2_A 165 PLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLEK 228 (266)
T ss_dssp TTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTTTGGGCSEEEEEETTEEEEEEEHHHHHHH
T ss_pred ccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 999999999999999998874 58999999999999976 999999999999999999998765
No 93
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=8.1e-41 Score=384.39 Aligned_cols=202 Identities=29% Similarity=0.473 Sum_probs=168.4
Q ss_pred EEeEEEECCCCCCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCC---HHHHhcccEEecCCCCCCcc-
Q 047171 330 FKDVDFSYPTRPDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQ---LKWLRSQMGLVNQEPILFST- 405 (1224)
Q Consensus 330 ~~~v~f~y~~~~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~---~~~~r~~i~~v~Q~~~lf~~- 405 (1224)
++||||.. +++++++|+||||||||||+++|+|+++|++|+|.++|+++.+.+ ....+++||||+|++.+|+.
T Consensus 21 l~~vsl~i---~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~r~ig~v~Q~~~l~~~l 97 (353)
T 1oxx_K 21 LDNVNINI---ENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNL 97 (353)
T ss_dssp EEEEEEEE---CTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTTS
T ss_pred EeceEEEE---CCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChhhCCEEEEeCCCccCCCC
Confidence 45555544 256799999999999999999999999999999999999986521 22346789999999999976
Q ss_pred cHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCC
Q 047171 406 SIKENILIGKPG--ASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSA 483 (1224)
Q Consensus 406 ti~~ni~~g~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~ililDE~ts~ 483 (1224)
||+|||.|+... .+.++..+ .+.+.++.+ |++.....+..+||||||||++|||||+.+|++||||||||+
T Consensus 98 tv~eni~~~~~~~~~~~~~~~~-----~v~~~l~~~--~L~~~~~~~~~~LSGGq~QRvalAraL~~~P~lLLLDEP~s~ 170 (353)
T 1oxx_K 98 TAFENIAFPLTNMKMSKEEIRK-----RVEEVAKIL--DIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSN 170 (353)
T ss_dssp CHHHHHHGGGTTSSCCHHHHHH-----HHHHHHHHT--TCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTT
T ss_pred CHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCccc
Confidence 999999997532 22222211 233445555 666667788899999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHc--CCCeEEEEeCCcchhhc-cCEEEEEeCceEEeecChHHHHhh
Q 047171 484 LDAESERIVQEALDQAS--QGRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGSHDVLMQM 541 (1224)
Q Consensus 484 lD~~~~~~i~~~l~~~~--~~~t~i~i~H~l~~~~~-ad~i~vl~~G~i~~~g~~~~l~~~ 541 (1224)
||+.+...+.+.|+++. .|+|+|+|||+++.+.. ||+|++|++|+|++.|+++|+...
T Consensus 171 LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~~~ 231 (353)
T 1oxx_K 171 LDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDN 231 (353)
T ss_dssp SCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 99999999999998864 38999999999999865 999999999999999999999875
No 94
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=9.8e-41 Score=385.94 Aligned_cols=205 Identities=25% Similarity=0.407 Sum_probs=170.5
Q ss_pred EEEEeEEEECCCC----------CCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCC------CCHHHHhc
Q 047171 328 IEFKDVDFSYPTR----------PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKK------LQLKWLRS 391 (1224)
Q Consensus 328 i~~~~v~f~y~~~----------~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~------~~~~~~r~ 391 (1224)
|+++||+++|++. +++++++|+||||||||||+++|+|+++|++|+|.++|+++.+ .+. .++
T Consensus 4 l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~--~~r 81 (372)
T 1g29_1 4 VRLVDVWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPP--KDR 81 (372)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCG--GGS
T ss_pred EEEEeEEEEECCEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCH--hHC
Confidence 5666666666432 2567999999999999999999999999999999999999876 543 357
Q ss_pred ccEEecCCCCCCcc-cHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHh
Q 047171 392 QMGLVNQEPILFST-SIKENILIGKP--GASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARAL 468 (1224)
Q Consensus 392 ~i~~v~Q~~~lf~~-ti~~ni~~g~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal 468 (1224)
+||||+|++.+|+. ||+|||.|+.. ....++..+ .+.+.++.+ |++.....+..+||||||||+||||||
T Consensus 82 ~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~-----~v~~~l~~~--~L~~~~~r~~~~LSGGq~QRvalArAL 154 (372)
T 1g29_1 82 DIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQ-----RVREVAELL--GLTELLNRKPRELSGGQRQRVALGRAI 154 (372)
T ss_dssp SEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHH-----HHHHHHHHH--TCGGGTTCCGGGSCHHHHHHHHHHHHH
T ss_pred CEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHC--CCchHhcCCcccCCHHHHHHHHHHHHH
Confidence 89999999999965 99999998632 122222211 223444444 666667788899999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEeCCcchhhc-cCEEEEEeCceEEeecChHHHHhh
Q 047171 469 IRDPKILLLDEATSALDAESERIVQEALDQAS--QGRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGSHDVLMQM 541 (1224)
Q Consensus 469 ~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~i~H~l~~~~~-ad~i~vl~~G~i~~~g~~~~l~~~ 541 (1224)
+.+|++||||||||+||+.+...+.+.|+++. .|.|+|+|||+++.+.. ||+|++|++|+|++.|++++++..
T Consensus 155 ~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~ 230 (372)
T 1g29_1 155 VRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDK 230 (372)
T ss_dssp HTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred hcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEeCCEEEEeCCHHHHHhC
Confidence 99999999999999999999999999998864 38999999999999865 999999999999999999999875
No 95
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=100.00 E-value=3.3e-40 Score=362.33 Aligned_cols=196 Identities=22% Similarity=0.339 Sum_probs=169.3
Q ss_pred EEeEEEECCCCCCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcccEEecCCCCCCcc-cHH
Q 047171 330 FKDVDFSYPTRPDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFST-SIK 408 (1224)
Q Consensus 330 ~~~v~f~y~~~~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~-ti~ 408 (1224)
++||||+.+ ++++++|+||||||||||+++|+|+++|+ |+|.++|+++...+...+|++||||+|++.+|.. |++
T Consensus 16 l~~vsl~i~---~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 91 (249)
T 2qi9_C 16 LGPLSGEVR---AGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVW 91 (249)
T ss_dssp EEEEEEEEE---TTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHEEEECSCCCCCTTCBHH
T ss_pred EeeeEEEEc---CCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceEEEECCCCccCCCCcHH
Confidence 566666653 57799999999999999999999999999 9999999999888888889999999999998865 999
Q ss_pred HHHhcCCC-CCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCC-------EEEEeCC
Q 047171 409 ENILIGKP-GASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPK-------ILLLDEA 480 (1224)
Q Consensus 409 ~ni~~g~~-~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~-------ililDE~ 480 (1224)
||+.++.. ..+.+++.+ .++.+ |++.....++.+||||||||++|||||+.+|+ +||||||
T Consensus 92 e~l~~~~~~~~~~~~~~~---------~l~~~--~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEP 160 (249)
T 2qi9_C 92 HYLTLHQHDKTRTELLND---------VAGAL--ALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEP 160 (249)
T ss_dssp HHHHTTCSSTTCHHHHHH---------HHHHT--TCGGGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESST
T ss_pred HHHHHhhccCCcHHHHHH---------HHHHc--CChhHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECC
Confidence 99999742 112333333 33333 55556677889999999999999999999999 9999999
Q ss_pred CCCCCHHHHHHHHHHHHHHc-CCCeEEEEeCCcchhh-ccCEEEEEeCceEEeecChHHHHh
Q 047171 481 TSALDAESERIVQEALDQAS-QGRTMIIIAHRLSTIR-KADLIGVLQSGRVIESGSHDVLMQ 540 (1224)
Q Consensus 481 ts~lD~~~~~~i~~~l~~~~-~~~t~i~i~H~l~~~~-~ad~i~vl~~G~i~~~g~~~~l~~ 540 (1224)
||+||+.+++.+.+.|+++. +|+|+|++||+++.+. .||+|++|++|++++.|+++++.+
T Consensus 161 ts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 222 (249)
T 2qi9_C 161 MNSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLT 222 (249)
T ss_dssp TTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEEEHHHHSC
T ss_pred cccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999998864 5899999999999985 599999999999999999999864
No 96
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=2.3e-40 Score=365.44 Aligned_cols=203 Identities=26% Similarity=0.416 Sum_probs=160.1
Q ss_pred EEEEeEEEECCCC----------CCCCEEEEEcCCCCcHHHHHHHHhcC--CCCCCcEEEECCEecCCCCHHHH-hcccE
Q 047171 328 IEFKDVDFSYPTR----------PDTPTIGLVGSSGSGKSTVISLLERF--YDPVKGNILLDGHKIKKLQLKWL-RSQMG 394 (1224)
Q Consensus 328 i~~~~v~f~y~~~----------~~~~~~~ivG~sGsGKSTl~~ll~~~--~~~~~G~i~~~g~~~~~~~~~~~-r~~i~ 394 (1224)
|+++||+|+|++. +++++++|+||||||||||+++|+|+ ++|++|+|.++|+++...+.... |..++
T Consensus 4 l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~~i~ 83 (250)
T 2d2e_A 4 LEIRDLWASIDGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKGLF 83 (250)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHTTBC
T ss_pred EEEEeEEEEECCEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhCcEE
Confidence 5566666666432 35779999999999999999999998 89999999999999988876554 45699
Q ss_pred EecCCCCCCcc-cHHHHHhcCCC---C--CCHHHHHHHHHHhcHHHHHHhcccccc-ccccCCCCC-CChHHHHHHHHHH
Q 047171 395 LVNQEPILFST-SIKENILIGKP---G--ASMETVVKAAQAANVHDFIMKLNDGYE-TKVGQFGVQ-LSGGQKQRIAIAR 466 (1224)
Q Consensus 395 ~v~Q~~~lf~~-ti~~ni~~g~~---~--~~~~~~~~~~~~~~~~~~i~~l~~g~~-t~~~~~g~~-LSgGq~qriaiAR 466 (1224)
||+|+|.+|++ |++||+.++.. . ...++.. ..+.+.++.+ |++ ........+ ||||||||++|||
T Consensus 84 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--gl~~~~~~~~~~~~LSgGqkQrv~iAr 156 (250)
T 2d2e_A 84 LAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFW-----TKVKKALELL--DWDESYLSRYLNEGFSGGEKKRNEILQ 156 (250)
T ss_dssp CCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHH-----HHHHHHHHHH--TCCGGGGGSBTTCC----HHHHHHHHH
T ss_pred EeccCCccccCCCHHHHHHHHHHhhccccCCHHHHH-----HHHHHHHHHc--CCChhHhcCCcccCCCHHHHHHHHHHH
Confidence 99999999876 99999987521 0 1111111 1223444544 553 344556667 9999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEeCCcchhhc--cCEEEEEeCceEEeecChHH
Q 047171 467 ALIRDPKILLLDEATSALDAESERIVQEALDQAS-QGRTMIIIAHRLSTIRK--ADLIGVLQSGRVIESGSHDV 537 (1224)
Q Consensus 467 al~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~i~H~l~~~~~--ad~i~vl~~G~i~~~g~~~~ 537 (1224)
||+++|++||||||||+||+.+++.+.+.|+++. +|+|+|+|||+++.+.. ||+|++|++|++++.|+++.
T Consensus 157 aL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~~d~v~~l~~G~i~~~g~~~~ 230 (250)
T 2d2e_A 157 LLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVVATGGPEL 230 (250)
T ss_dssp HHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGGGGTSCCSEEEEEETTEEEEEESHHH
T ss_pred HHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCCEEEEEECCEEEEEeCHHH
Confidence 9999999999999999999999999999998875 58999999999999876 59999999999999999873
No 97
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=7.3e-40 Score=362.16 Aligned_cols=191 Identities=18% Similarity=0.323 Sum_probs=164.4
Q ss_pred EEEeEEEECCCCCCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcccE-EecCCCCCCcccH
Q 047171 329 EFKDVDFSYPTRPDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMG-LVNQEPILFSTSI 407 (1224)
Q Consensus 329 ~~~~v~f~y~~~~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~-~v~Q~~~lf~~ti 407 (1224)
.++||+|+. + +++++|+||||||||||+++|+|++ |++|+|.++|+++... .. |++|+ ||+|++.+ +.|+
T Consensus 20 il~~vsl~i---~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~--~~-~~~i~~~v~Q~~~l-~~tv 90 (263)
T 2pjz_A 20 SLENINLEV---N-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKI--RN-YIRYSTNLPEAYEI-GVTV 90 (263)
T ss_dssp EEEEEEEEE---C-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGC--SC-CTTEEECCGGGSCT-TSBH
T ss_pred eEEeeeEEE---C-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcch--HH-hhheEEEeCCCCcc-CCcH
Confidence 467777765 4 6799999999999999999999999 9999999999998754 23 77899 99999998 8899
Q ss_pred HHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhcccccc-ccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCC
Q 047171 408 KENILIGKP--GASMETVVKAAQAANVHDFIMKLNDGYE-TKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSAL 484 (1224)
Q Consensus 408 ~~ni~~g~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~-t~~~~~g~~LSgGq~qriaiARal~~~~~ililDE~ts~l 484 (1224)
+||+.++.+ ....+++ .+.++.+ |++ ...+.++.+||||||||++|||||+.+|++||||||||+|
T Consensus 91 ~enl~~~~~~~~~~~~~~---------~~~l~~~--gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~L 159 (263)
T 2pjz_A 91 NDIVYLYEELKGLDRDLF---------LEMLKAL--KLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENV 159 (263)
T ss_dssp HHHHHHHHHHTCCCHHHH---------HHHHHHT--TCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTC
T ss_pred HHHHHHhhhhcchHHHHH---------HHHHHHc--CCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCcccc
Confidence 999988532 2223333 3445555 666 7778889999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHcCCCeEEEEeCCcchhhc-cC-EEEEEeCceEEeecChHHHHhh
Q 047171 485 DAESERIVQEALDQASQGRTMIIIAHRLSTIRK-AD-LIGVLQSGRVIESGSHDVLMQM 541 (1224)
Q Consensus 485 D~~~~~~i~~~l~~~~~~~t~i~i~H~l~~~~~-ad-~i~vl~~G~i~~~g~~~~l~~~ 541 (1224)
|+.+.+.+.+.|+++.+ |+|++||+++.+.. || +|++|++|++++.|+++++.+.
T Consensus 160 D~~~~~~l~~~L~~~~~--tviivtHd~~~~~~~~d~~i~~l~~G~i~~~g~~~~l~~~ 216 (263)
T 2pjz_A 160 DAARRHVISRYIKEYGK--EGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSELLES 216 (263)
T ss_dssp CHHHHHHHHHHHHHSCS--EEEEEESCGGGGGGCTTSEEEEEETTEEEEEEEHHHHHTE
T ss_pred CHHHHHHHHHHHHHhcC--cEEEEEcCHHHHHHhcCceEEEEECCEEEEecCHHHHHhh
Confidence 99999999999988755 99999999999865 99 9999999999999999998754
No 98
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=3.6e-39 Score=358.84 Aligned_cols=207 Identities=22% Similarity=0.316 Sum_probs=169.9
Q ss_pred cEEEEeEEEECCCC----------CCCCEEEEEcCCCCcHHHHHHHHhcC--CCCCCcEEEECCEecCCCCHHHH-hccc
Q 047171 327 EIEFKDVDFSYPTR----------PDTPTIGLVGSSGSGKSTVISLLERF--YDPVKGNILLDGHKIKKLQLKWL-RSQM 393 (1224)
Q Consensus 327 ~i~~~~v~f~y~~~----------~~~~~~~ivG~sGsGKSTl~~ll~~~--~~~~~G~i~~~g~~~~~~~~~~~-r~~i 393 (1224)
-|+++||+|+|++. +++++++|+||||||||||+++|+|+ ++|++|+|.++|+++...+.... +..|
T Consensus 20 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i 99 (267)
T 2zu0_C 20 MLSIKDLHVSVEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGEGI 99 (267)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHHHTE
T ss_pred eEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhhCCE
Confidence 48888888888642 36779999999999999999999999 57999999999999988776555 4569
Q ss_pred EEecCCCCCCcc-cHHHHHhcCC---------CCCCHHHHHHHHHHhcHHHHHHhccccccc-cccCCCC-CCChHHHHH
Q 047171 394 GLVNQEPILFST-SIKENILIGK---------PGASMETVVKAAQAANVHDFIMKLNDGYET-KVGQFGV-QLSGGQKQR 461 (1224)
Q Consensus 394 ~~v~Q~~~lf~~-ti~~ni~~g~---------~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t-~~~~~g~-~LSgGq~qr 461 (1224)
+||+|+|.+|+. |+.||+.++. +..+.++.. ..+.+.++.+ |+++ ....... +||||||||
T Consensus 100 ~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--gl~~~~~~~~~~~~LSgGq~QR 172 (267)
T 2zu0_C 100 FMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQ-----DLMEEKIALL--KMPEDLLTRSVNVGFSGGEKKR 172 (267)
T ss_dssp EEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHH-----HHHHHHHHHT--TCCTTTTTSBTTTTCCHHHHHH
T ss_pred EEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHH-----HHHHHHHHHc--CCChhHhcCCcccCCCHHHHHH
Confidence 999999998876 9999997532 111222211 1234556665 6654 3344444 599999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEeCCcchhhc--cCEEEEEeCceEEeecChHHH
Q 047171 462 IAIARALIRDPKILLLDEATSALDAESERIVQEALDQAS-QGRTMIIIAHRLSTIRK--ADLIGVLQSGRVIESGSHDVL 538 (1224)
Q Consensus 462 iaiARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~i~H~l~~~~~--ad~i~vl~~G~i~~~g~~~~l 538 (1224)
++|||||+.+|+|||||||||+||+.+.+.+.+.|+++. +|+|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 173 v~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 252 (267)
T 2zu0_C 173 NDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFTLV 252 (267)
T ss_dssp HHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGGTSCCSEEEEEETTEEEEEECTTHH
T ss_pred HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHHHhhcCCEEEEEECCEEEEEcCHHHH
Confidence 999999999999999999999999999999999998874 58999999999999875 899999999999999999887
Q ss_pred Hh
Q 047171 539 MQ 540 (1224)
Q Consensus 539 ~~ 540 (1224)
..
T Consensus 253 ~~ 254 (267)
T 2zu0_C 253 KQ 254 (267)
T ss_dssp HH
T ss_pred hh
Confidence 43
No 99
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=4.5e-39 Score=354.79 Aligned_cols=191 Identities=26% Similarity=0.357 Sum_probs=158.2
Q ss_pred EEEEeEEEECC-CC----------CCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcccEEe
Q 047171 328 IEFKDVDFSYP-TR----------PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLV 396 (1224)
Q Consensus 328 i~~~~v~f~y~-~~----------~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v 396 (1224)
|+++||+++|+ +. +++++++|+||||||||||+++|+|+++|++|+|. ++++||||
T Consensus 5 l~i~~l~~~y~~~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~-------------~~~~i~~v 71 (253)
T 2nq2_C 5 LSVENLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIE-------------VYQSIGFV 71 (253)
T ss_dssp EEEEEEEEEETTTTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEE-------------ECSCEEEE
T ss_pred EEEeeEEEEeCCCCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE-------------EeccEEEE
Confidence 56667777765 32 25679999999999999999999999999999998 24579999
Q ss_pred cCCCCCC-cccHHHHHhcCCCC-------CCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHh
Q 047171 397 NQEPILF-STSIKENILIGKPG-------ASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARAL 468 (1224)
Q Consensus 397 ~Q~~~lf-~~ti~~ni~~g~~~-------~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal 468 (1224)
+|++.+| ..||+||+.++... ...+ .. ..+.+.++.+ |++.....++.+||||||||++|||||
T Consensus 72 ~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~-~~-----~~~~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~lAraL 143 (253)
T 2nq2_C 72 PQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSH-DY-----QVAMQALDYL--NLTHLAKREFTSLSGGQRQLILIARAI 143 (253)
T ss_dssp CSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHH-HH-----HHHHHHHHHT--TCGGGTTSBGGGSCHHHHHHHHHHHHH
T ss_pred cCCCccCCCCCHHHHHHHhhhhhcccccCCCHH-HH-----HHHHHHHHHc--CChHHhcCChhhCCHHHHHHHHHHHHH
Confidence 9999887 56999999987421 1111 11 1123344444 566667778899999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-C-CCeEEEEeCCcchhhc-cCEEEEEeCceEEeecChHHHHh
Q 047171 469 IRDPKILLLDEATSALDAESERIVQEALDQAS-Q-GRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGSHDVLMQ 540 (1224)
Q Consensus 469 ~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~-~-~~t~i~i~H~l~~~~~-ad~i~vl~~G~i~~~g~~~~l~~ 540 (1224)
+.+|++||||||||+||+.+.+.+.+.|.++. + |+|+|++||+++.+.. ||+|++|++|+ ++.|+++++.+
T Consensus 144 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~-~~~g~~~~~~~ 217 (253)
T 2nq2_C 144 ASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQN-FKFGETRNILT 217 (253)
T ss_dssp HTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHCSEEEEEETTE-EEEEEHHHHCC
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCe-EecCCHHHHhC
Confidence 99999999999999999999999999998864 3 8999999999999854 99999999999 99999999864
No 100
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=1.8e-38 Score=339.96 Aligned_cols=185 Identities=18% Similarity=0.323 Sum_probs=152.8
Q ss_pred cEEEEeEEEECCC---------CCCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcccEEec
Q 047171 327 EIEFKDVDFSYPT---------RPDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVN 397 (1224)
Q Consensus 327 ~i~~~~v~f~y~~---------~~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~ 397 (1224)
.|+++||+++|++ -+++++++|+||||||||||+++|+|+++|++|+|.++|+++. ..|+.|+||+
T Consensus 10 ~l~~~~ls~~y~~~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~-----~~~~~i~~v~ 84 (214)
T 1sgw_A 10 KLEIRDLSVGYDKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT-----KVKGKIFFLP 84 (214)
T ss_dssp EEEEEEEEEESSSEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGG-----GGGGGEEEEC
T ss_pred eEEEEEEEEEeCCeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhh-----hhcCcEEEEe
Confidence 4788888888854 0256799999999999999999999999999999999999986 2578899999
Q ss_pred CCCCCCcc-cHHHHHhcCCC----CCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCC
Q 047171 398 QEPILFST-SIKENILIGKP----GASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDP 472 (1224)
Q Consensus 398 Q~~~lf~~-ti~~ni~~g~~----~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~ 472 (1224)
|+|.+|.. |++||+.++.. ....+++. +.++.+ |++.. ++++.+||||||||++|||||+.+|
T Consensus 85 q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~---------~~l~~~--gl~~~-~~~~~~LSgGqkqrv~laraL~~~p 152 (214)
T 1sgw_A 85 EEIIVPRKISVEDYLKAVASLYGVKVNKNEIM---------DALESV--EVLDL-KKKLGELSQGTIRRVQLASTLLVNA 152 (214)
T ss_dssp SSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHH---------HHHHHT--TCCCT-TSBGGGSCHHHHHHHHHHHHTTSCC
T ss_pred CCCcCCCCCCHHHHHHHHHHhcCCchHHHHHH---------HHHHHc--CCCcC-CCChhhCCHHHHHHHHHHHHHHhCC
Confidence 99999876 99999988521 11122232 334444 67666 7888999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEeCCcchhhc-cCEEEEEeCceE
Q 047171 473 KILLLDEATSALDAESERIVQEALDQAS-QGRTMIIIAHRLSTIRK-ADLIGVLQSGRV 529 (1224)
Q Consensus 473 ~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~i~H~l~~~~~-ad~i~vl~~G~i 529 (1224)
++||||||||+||+.+...+.+.|+++. +|+|+|++||+++.+.. ||+|+ +.+|+|
T Consensus 153 ~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~v~-~~~~~~ 210 (214)
T 1sgw_A 153 EIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELSYCDVNENLH-KYSTKI 210 (214)
T ss_dssp SEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCTTSSEEEEGG-GGBC--
T ss_pred CEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEE-EeCCcc
Confidence 9999999999999999999999998764 58999999999999987 66654 556666
No 101
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=100.00 E-value=3.4e-39 Score=361.53 Aligned_cols=236 Identities=15% Similarity=0.201 Sum_probs=191.4
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCCCCCCCCCCCcccEEEEEEEEECCC
Q 047171 910 VSPKQLFQAFFLLMSTGKNIADAGSMTSDIAKGSSAIRTIFTILDRKSEIDPEDPKASEDIEEPTKGFIELKNVFFSYPS 989 (1224)
Q Consensus 910 ~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~g~I~~~~vsf~Y~~ 989 (1224)
.+.+.+.+++.+... ..++..+...+..+.++..+.+|+.++++.+++..... . ...+..+.|+++||+|+|+
T Consensus 40 ~~~~n~~afl~~~~q-~~~v~~~~~~~~~~~~a~~a~~ri~~~l~~~~~~~~~~--~---~~~~~~~~i~~~~vs~~y~- 112 (305)
T 2v9p_A 40 GSDSNARAFLATNSQ-AKHVKDCATMVRHYLRAETQALSMPAYIKARCKLATGE--G---SWKSILTFFNYQNIELITF- 112 (305)
T ss_dssp TTCHHHHHHTTCTTH-HHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHCCSS--C---CTHHHHHHHHHTTCCHHHH-
T ss_pred CccHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCC--C---cccccCCeEEEEEEEEEcC-
Confidence 344455444444333 47788888999999999999999999998654322110 0 1011234699999999995
Q ss_pred CCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcceEEEecCCCCCccc
Q 047171 990 RPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIALVSQEPTLFAGT 1069 (1224)
Q Consensus 990 ~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qdp~LF~gT 1069 (1224)
.++|+|+||+|++||++|||||||||||||+++|+|++ +|+| +++++|+|.+|++|
T Consensus 113 ---~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I------------------~~~v~q~~~lf~~t 168 (305)
T 2v9p_A 113 ---INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSV------------------LSFANHKSHFWLAS 168 (305)
T ss_dssp ---HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH---TCEE------------------ECGGGTTSGGGGGG
T ss_pred ---hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc---CceE------------------EEEecCcccccccc
Confidence 46999999999999999999999999999999999999 7998 45789999999999
Q ss_pred HHH-HHccCCCCCCHHHHHHHHHHHhHHHHHHh-cccccccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeccCCCC
Q 047171 1070 IRQ-NIVYGKEVATEAEIRKAAVLANAHEFISS-TEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSAL 1147 (1224)
Q Consensus 1070 Ire-Nl~~~~~~~~deei~~al~~a~l~~~I~~-lp~gldt~vge~G~~LSGGQrQRlaLARAll~~p~ILlLDEaTSaL 1147 (1224)
+++ ||.++ ++.++ ++++++.. +|+|+| |.+|||||||| |||++++|+||| ||+|
T Consensus 169 i~~~ni~~~-~~~~~----------~~~~~i~~~L~~gld------g~~LSgGqkQR---ARAll~~p~iLl----Ts~L 224 (305)
T 2v9p_A 169 LADTRAALV-DDATH----------ACWRYFDTYLRNALD------GYPVSIDRKHK---AAVQIKAPPLLV----TSNI 224 (305)
T ss_dssp GTTCSCEEE-EEECH----------HHHHHHHHTTTGGGG------TCCEECCCSSC---CCCEECCCCEEE----EESS
T ss_pred HHHHhhccC-ccccH----------HHHHHHHHHhHccCC------ccCcCHHHHHH---HHHHhCCCCEEE----ECCC
Confidence 998 99986 44443 34677777 899998 67899999999 999999999999 9999
Q ss_pred CHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCCchhHHHHHHhhc
Q 047171 1148 DSASENLVQEALEKMMVGRTCVVVAHRLSTIQKADNIVVIKNGKVVEQGTQSSLLSMGNGGAYYSLIKMQAS 1219 (1224)
Q Consensus 1148 D~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~aD~I~vl~~G~Ive~Gt~~eLl~~~~~g~y~~l~~~q~~ 1219 (1224)
|+++++.|+. +|||+++++.||+| +|++|+|++.|+|++| ++.|+++|..+..
T Consensus 225 D~~~~~~i~~-------------ltH~~~~~~~aD~i-vl~~G~iv~~g~~~el-----~~~y~~l~~~~~~ 277 (305)
T 2v9p_A 225 DVQAEDRYLY-------------LHSRVQTFRFEQPC-TDESGEQPFNITDADW-----KSFFVRLWGRLDL 277 (305)
T ss_dssp CSTTCGGGGG-------------GTTTEEEEECCCCC-CCC---CCCCCCHHHH-----HHHHHHSTTTTTC
T ss_pred CHHHHHHHHH-------------HhCCHHHHHhCCEE-EEeCCEEEEeCCHHHH-----HHHHHHHHHHccc
Confidence 9999988862 39999999999999 9999999999999999 3789999876543
No 102
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.98 E-value=1.3e-34 Score=354.71 Aligned_cols=170 Identities=12% Similarity=0.022 Sum_probs=125.4
Q ss_pred EEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcceE
Q 047171 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIA 1057 (1224)
Q Consensus 978 I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~ 1057 (1224)
++.+++++.|+.- ..+| +..+++|+.++|+|+||||||||++.+++...|. |+ +.+.
T Consensus 258 ~~~~~l~~g~~~l--d~vL---~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~-G~-----------------~vi~ 314 (525)
T 1tf7_A 258 SSNVRVSSGVVRL--DEMC---GGGFFKDSIILATGATGTGKTLLVSRFVENACAN-KE-----------------RAIL 314 (525)
T ss_dssp CCCCEECCSCHHH--HHHT---TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT-TC-----------------CEEE
T ss_pred cccceeecChHHH--HHHh---CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC-CC-----------------CEEE
Confidence 3455676666310 1233 4499999999999999999999999999998874 53 1256
Q ss_pred EEecCCCCCcccHHHHHccCCCCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHccCCCE
Q 047171 1058 LVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMI 1137 (1224)
Q Consensus 1058 ~V~Qdp~LF~gTIreNl~~~~~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll~~p~I 1137 (1224)
+++|++. .++++|.... ..+.++ +.. .|+..........|||||+||+++||++..+|++
T Consensus 315 ~~~ee~~---~~l~~~~~~~--g~~~~~------------~~~---~g~~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~l 374 (525)
T 1tf7_A 315 FAYEESR---AQLLRNAYSW--GMDFEE------------MER---QNLLKIVCAYPESAGLEDHLQIIKSEINDFKPAR 374 (525)
T ss_dssp EESSSCH---HHHHHHHHTT--SCCHHH------------HHH---TTSEEECCCCGGGSCHHHHHHHHHHHHHTTCCSE
T ss_pred EEEeCCH---HHHHHHHHHc--CCCHHH------------HHh---CCCEEEEEeccccCCHHHHHHHHHHHHHhhCCCE
Confidence 6777762 3566665321 112111 111 1333334445567999999999999999999999
Q ss_pred EEEeccCCCCCHH-----HHHHHHHHHHHhc-CCCeEEEEccCc----------hhhhh-cCEEEEEeCCE
Q 047171 1138 LLLDEATSALDSA-----SENLVQEALEKMM-VGRTCVVVAHRL----------STIQK-ADNIVVIKNGK 1191 (1224)
Q Consensus 1138 LlLDEaTSaLD~~-----te~~I~~~l~~~~-~~~TvI~IaHrl----------~ti~~-aD~I~vl~~G~ 1191 (1224)
||+| ||++||.. ..+.+.+.++.+. .|+|+|+|+|.. ..+.. ||+|++|++|+
T Consensus 375 lilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 375 IAID-SLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQYVE 444 (525)
T ss_dssp EEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEEEE
T ss_pred EEEc-ChHHHHhhCChHHHHHHHHHHHHHHHhCCCEEEEEECcccccCcccccCcccceeeeEEEEEEEEE
Confidence 9999 99999998 8888888887664 589999999998 66665 99999999886
No 103
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.97 E-value=8.9e-31 Score=331.01 Aligned_cols=197 Identities=23% Similarity=0.324 Sum_probs=162.8
Q ss_pred ccEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcc
Q 047171 976 GFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSC 1055 (1224)
Q Consensus 976 g~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~ 1055 (1224)
..+...|++++|+ +.++|+|+||+|++||++||+||||||||||+++|.| |+| +|.+... +.+
T Consensus 434 ~~L~~~~ls~~yg---~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag------G~i--~g~~~~~------~~~ 496 (986)
T 2iw3_A 434 EDLCNCEFSLAYG---AKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN------GQV--DGFPTQE------ECR 496 (986)
T ss_dssp CEEEEEEEEEEET---TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH------TCS--TTCCCTT------TSC
T ss_pred ceeEEeeEEEEEC---CEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC------CCc--CCCcccc------cee
Confidence 3688889999995 3469999999999999999999999999999999995 654 5654321 124
Q ss_pred eEEEecCC-CCC-cccHHHHHccCCCCCCHHHHHHHHHHHhH-HHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHc
Q 047171 1056 IALVSQEP-TLF-AGTIRQNIVYGKEVATEAEIRKAAVLANA-HEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVL 1132 (1224)
Q Consensus 1056 i~~V~Qdp-~LF-~gTIreNl~~~~~~~~deei~~al~~a~l-~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll 1132 (1224)
++|++|++ .++ ..|+.||+.+..... ++++.++++..++ .+.. +.++ .+||||||||++|||||+
T Consensus 497 ~~~v~q~~~~~~~~ltv~e~l~~~~~~~-~~~v~~~L~~lgL~~~~~-------~~~~----~~LSGGqkQRvaLArAL~ 564 (986)
T 2iw3_A 497 TVYVEHDIDGTHSDTSVLDFVFESGVGT-KEAIKDKLIEFGFTDEMI-------AMPI----SALSGGWKMKLALARAVL 564 (986)
T ss_dssp EEETTCCCCCCCTTSBHHHHHHTTCSSC-HHHHHHHHHHTTCCHHHH-------HSBG----GGCCHHHHHHHHHHHHHH
T ss_pred EEEEcccccccccCCcHHHHHHHhhcCH-HHHHHHHHHHcCCChhhh-------cCCc----ccCCHHHHHHHHHHHHHh
Confidence 78999986 344 569999997521112 6677777777776 2332 2233 369999999999999999
Q ss_pred cCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEeCCEEE-EecChhHHhh
Q 047171 1133 KNPMILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLSTIQK-ADNIVVIKNGKVV-EQGTQSSLLS 1203 (1224)
Q Consensus 1133 ~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-aD~I~vl~~G~Iv-e~Gt~~eLl~ 1203 (1224)
.+|+||||||||++||+.+.+.+.+.|++ .|+|+|+|||+++.+.. ||+|++|++|+++ ..|++++++.
T Consensus 565 ~~P~lLLLDEPTs~LD~~~~~~l~~~L~~--~g~tvIivSHdl~~l~~~adrii~L~~G~iv~~~G~~~e~~~ 635 (986)
T 2iw3_A 565 RNADILLLDEPTNHLDTVNVAWLVNYLNT--CGITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEFVK 635 (986)
T ss_dssp TTCSEEEEESTTTTCCHHHHHHHHHHHHH--SCSEEEEECSCHHHHHHHCSEEEEEETTEEEEEESCHHHHHH
T ss_pred cCCCEEEEECCccCCCHHHHHHHHHHHHh--CCCEEEEEECCHHHHHHhCCEEEEEECCeeecCCCCHHHHHh
Confidence 99999999999999999999999999988 68999999999999976 9999999999997 5899999875
No 104
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.97 E-value=3.5e-32 Score=342.89 Aligned_cols=203 Identities=28% Similarity=0.428 Sum_probs=137.6
Q ss_pred ccceeceeEEEeCCcEEEEEcCCCCChHHHH---------------------HHHhcccCCC-------CceEEECCccC
Q 047171 993 QMIFKGLTLKIEAGKTVALVGQSGSGKSTII---------------------GLIERFYDPQ-------SGSVMVDERNI 1044 (1224)
Q Consensus 993 ~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~---------------------~lL~rl~~p~-------~G~I~idG~di 1044 (1224)
..+|+||||+|++||++||+||||||||||+ +++.++..|+ .|.|.++|.++
T Consensus 31 ~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~~ 110 (670)
T 3ux8_A 31 AHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKTT 110 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC-
T ss_pred ccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCchh
Confidence 4589999999999999999999999999998 8889999988 55667777655
Q ss_pred CCCCHHHHhcceEEEecCCCCC--------------------cccHHHHHccCCCC-CCH--HH-----HHHHHHHHhHH
Q 047171 1045 KSYNLRKLRSCIALVSQEPTLF--------------------AGTIRQNIVYGKEV-ATE--AE-----IRKAAVLANAH 1096 (1224)
Q Consensus 1045 ~~~~~~~lR~~i~~V~Qdp~LF--------------------~gTIreNl~~~~~~-~~d--ee-----i~~al~~a~l~ 1096 (1224)
... .|+.+++|+|.+.++ ..|++||+.++... ..+ .+ +.++.+..+
T Consensus 111 ~~~----~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 184 (670)
T 3ux8_A 111 SRN----PRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRLG-- 184 (670)
T ss_dssp --------CCBHHHHTTCC-------------------------CC--------------------------CHHHHH--
T ss_pred hcc----chhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHHH--
Confidence 432 345666776665432 45899999875211 011 11 111111111
Q ss_pred HHHHhcccccccc-cCCCCCCCChHHHHHHHHHHHHccCCC--EEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEc
Q 047171 1097 EFISSTEDGYDTY-CGERGVQLSGGQKQRIALARAVLKNPM--ILLLDEATSALDSASENLVQEALEKMM-VGRTCVVVA 1172 (1224)
Q Consensus 1097 ~~I~~lp~gldt~-vge~G~~LSGGQrQRlaLARAll~~p~--ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~Ia 1172 (1224)
.+..+ |++.. ......+||||||||++|||||+.+|+ +||||||||+||+.+...+.+.|+++. +|+|+|+||
T Consensus 185 -~l~~~--gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vt 261 (670)
T 3ux8_A 185 -FLQNV--GLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVE 261 (670)
T ss_dssp -HHHHT--TCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEEC
T ss_pred -HHHHc--CCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 12222 33221 234456799999999999999999988 999999999999999999999998875 589999999
Q ss_pred cCchhhhhcCEEEEE------eCCEEEEecChhHHhhc
Q 047171 1173 HRLSTIQKADNIVVI------KNGKVVEQGTQSSLLSM 1204 (1224)
Q Consensus 1173 Hrl~ti~~aD~I~vl------~~G~Ive~Gt~~eLl~~ 1204 (1224)
|+++.+..||+|++| ++|++++.|+++++.+.
T Consensus 262 Hd~~~~~~~d~ii~l~~g~~~~~G~i~~~g~~~~~~~~ 299 (670)
T 3ux8_A 262 HDEDTMLAADYLIDIGPGAGIHGGEVVAAGTPEEVMND 299 (670)
T ss_dssp CCHHHHHHCSEEEEECSSSGGGCCSEEEEECHHHHHTC
T ss_pred CCHHHHhhCCEEEEecccccccCCEEEEecCHHHHhcC
Confidence 999998889999999 89999999999999875
No 105
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.97 E-value=4.4e-32 Score=333.57 Aligned_cols=193 Identities=21% Similarity=0.305 Sum_probs=154.6
Q ss_pred EEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceE---------EECCccCCCCCHHH
Q 047171 981 KNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSV---------MVDERNIKSYNLRK 1051 (1224)
Q Consensus 981 ~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I---------~idG~di~~~~~~~ 1051 (1224)
+||+++|+.. ..+|+|+| +|++||++||+||||||||||+++|.|+++|++|++ .++|.++.......
T Consensus 95 ~~ls~~yg~~--~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~G~~~~~~~~~~ 171 (607)
T 3bk7_A 95 EDCVHRYGVN--AFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERL 171 (607)
T ss_dssp GSEEEECSTT--CCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTTTSTHHHHHHHH
T ss_pred CCeEEEECCC--CeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeCCEehhhhhhhh
Confidence 8999999632 24899999 999999999999999999999999999999999996 45676654321111
Q ss_pred --HhcceEEEecCCC----CCcccHHHHHccCCCCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHH
Q 047171 1052 --LRSCIALVSQEPT----LFAGTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRI 1125 (1224)
Q Consensus 1052 --lR~~i~~V~Qdp~----LF~gTIreNl~~~~~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRl 1125 (1224)
.+..+++++|+.. ++.+|++||+.... ..+++.++++..++.+ .......+||||||||+
T Consensus 172 ~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~---~~~~~~~~L~~lgL~~-----------~~~~~~~~LSGGekQRv 237 (607)
T 3bk7_A 172 KNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVD---EVGKFEEVVKELELEN-----------VLDRELHQLSGGELQRV 237 (607)
T ss_dssp HHTSCCCEEECSCGGGGGGTCCSBHHHHHHHTC---CSSCHHHHHHHTTCTT-----------GGGSBGGGCCHHHHHHH
T ss_pred hhhhcceEEeechhhhchhhccccHHHHhhhhH---HHHHHHHHHHHcCCCc-----------hhCCChhhCCHHHHHHH
Confidence 2346889998743 45579999997532 1234556665555432 22233456999999999
Q ss_pred HHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh-cCEEEEEeCC
Q 047171 1126 ALARAVLKNPMILLLDEATSALDSASENLVQEALEKMM-VGRTCVVVAHRLSTIQK-ADNIVVIKNG 1190 (1224)
Q Consensus 1126 aLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-aD~I~vl~~G 1190 (1224)
+|||||+++|+|||||||||+||+.+...+.+.|+++. +|+|+|+|||+++.+.. ||+|++|+++
T Consensus 238 aIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl~~~~~~adri~vl~~~ 304 (607)
T 3bk7_A 238 AIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVVYGE 304 (607)
T ss_dssp HHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEESC
T ss_pred HHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecChHHHHhhCCEEEEECCC
Confidence 99999999999999999999999999999999998875 48999999999999876 9999999864
No 106
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.97 E-value=6.6e-32 Score=329.11 Aligned_cols=196 Identities=21% Similarity=0.315 Sum_probs=153.1
Q ss_pred EEE-EEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceE---------EECCccCCCC
Q 047171 978 IEL-KNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSV---------MVDERNIKSY 1047 (1224)
Q Consensus 978 I~~-~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I---------~idG~di~~~ 1047 (1224)
.++ +||+++|++. .++|+|+| +|++||++||+||||||||||+++|.|+++|++|++ .++|.++...
T Consensus 21 ~~~~~~ls~~yg~~--~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~ 97 (538)
T 1yqt_A 21 EQLEEDCVHRYGVN--AFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNY 97 (538)
T ss_dssp ---CCCEEEECSTT--CCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHH
T ss_pred hhHhcCcEEEECCc--cccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHH
Confidence 355 5899999632 25899999 999999999999999999999999999999999996 4577655432
Q ss_pred CHHH--HhcceEEEecCCCC----CcccHHHHHccCCCCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHH
Q 047171 1048 NLRK--LRSCIALVSQEPTL----FAGTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQ 1121 (1224)
Q Consensus 1048 ~~~~--lR~~i~~V~Qdp~L----F~gTIreNl~~~~~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQ 1121 (1224)
.... .+..+++++|+..+ +.+|++||+.... ..+++.++++..++. ........+|||||
T Consensus 98 ~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~~---~~~~~~~~l~~lgl~-----------~~~~~~~~~LSgGe 163 (538)
T 1yqt_A 98 FEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKAD---ETGKLEEVVKALELE-----------NVLEREIQHLSGGE 163 (538)
T ss_dssp HHHHHTTSCCCEEECSCGGGSGGGCCSBHHHHHHHHC---SSSCHHHHHHHTTCT-----------TTTTSBGGGCCHHH
T ss_pred HHHHHHHhhhhhhhhhhhhhcchhhhccHHHHHhhhh---HHHHHHHHHHHcCCC-----------hhhhCChhhCCHHH
Confidence 1111 23468899997543 3469999986421 123455555555442 22223345799999
Q ss_pred HHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh-cCEEEEEeCC
Q 047171 1122 KQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMM-VGRTCVVVAHRLSTIQK-ADNIVVIKNG 1190 (1224)
Q Consensus 1122 rQRlaLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-aD~I~vl~~G 1190 (1224)
|||++|||||+.+|+|||||||||+||+.+.+.+.+.|+++. .|+|+|+|||+++.+.. ||+|++|++|
T Consensus 164 kQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~~~~~~~~dri~vl~~~ 234 (538)
T 1yqt_A 164 LQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLAVLDYLSDIIHVVYGE 234 (538)
T ss_dssp HHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEE
T ss_pred HHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCc
Confidence 999999999999999999999999999999999999998875 48999999999999876 9999999864
No 107
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.97 E-value=4.5e-35 Score=328.14 Aligned_cols=227 Identities=14% Similarity=0.181 Sum_probs=182.2
Q ss_pred hcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCcccccccccccccEEEEeEEEECC
Q 047171 259 ERGEKGGLVFVAGICTILGGVGIMSALPNLSFISQATTAATRIFEMIDRVPVINSEDEIGKTLAYLRGEIEFKDVDFSYP 338 (1224)
Q Consensus 259 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~ 338 (1224)
.+..+-+...+|+.+... ..|+..+...+..++++..+.+|+.++++.+++..... ...+...+.|+++||+|+|+
T Consensus 37 ~~~~~~~n~~afl~~~~q-~~~v~~~~~~~~~~~~a~~a~~ri~~~l~~~~~~~~~~---~~~~~~~~~i~~~~vs~~y~ 112 (305)
T 2v9p_A 37 LAAGSDSNARAFLATNSQ-AKHVKDCATMVRHYLRAETQALSMPAYIKARCKLATGE---GSWKSILTFFNYQNIELITF 112 (305)
T ss_dssp HTTTTCHHHHHHTTCTTH-HHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHCCSS---CCTHHHHHHHHHTTCCHHHH
T ss_pred HhcCccHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCC---CcccccCCeEEEEEEEEEcC
Confidence 345566778888776555 47899999999999999999999999998654322111 11112234588999999995
Q ss_pred ---------CCCCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcccEEecCCCCCCcccHHH
Q 047171 339 ---------TRPDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFSTSIKE 409 (1224)
Q Consensus 339 ---------~~~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ 409 (1224)
.-+++++++||||||||||||+++|+|++ +|+| +++|+|++++|++|+++
T Consensus 113 ~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I------------------~~~v~q~~~lf~~ti~~ 171 (305)
T 2v9p_A 113 INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSV------------------LSFANHKSHFWLASLAD 171 (305)
T ss_dssp HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH---TCEE------------------ECGGGTTSGGGGGGGTT
T ss_pred hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc---CceE------------------EEEecCccccccccHHH
Confidence 12567899999999999999999999999 8988 46789999999999998
Q ss_pred -HHhcCCCCCCHHHHHHHHHHhcHHHHHHh-ccccccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHH
Q 047171 410 -NILIGKPGASMETVVKAAQAANVHDFIMK-LNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAE 487 (1224)
Q Consensus 410 -ni~~g~~~~~~~~~~~~~~~~~~~~~i~~-l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~ililDE~ts~lD~~ 487 (1224)
||.++ +++++ ++++++.. +|+|++ |.+|||||||| |||++++|+||| ||+||++
T Consensus 172 ~ni~~~-~~~~~----------~~~~~i~~~L~~gld------g~~LSgGqkQR---ARAll~~p~iLl----Ts~LD~~ 227 (305)
T 2v9p_A 172 TRAALV-DDATH----------ACWRYFDTYLRNALD------GYPVSIDRKHK---AAVQIKAPPLLV----TSNIDVQ 227 (305)
T ss_dssp CSCEEE-EEECH----------HHHHHHHHTTTGGGG------TCCEECCCSSC---CCCEECCCCEEE----EESSCST
T ss_pred HhhccC-ccccH----------HHHHHHHHHhHccCC------ccCcCHHHHHH---HHHHhCCCCEEE----ECCCCHH
Confidence 99997 33332 34678887 999988 78999999999 999999999999 9999999
Q ss_pred HHHHHHHHHHHHcCCCeEEEEeCCcchhhccCEEEEEeCceEEeecChHHHHhhccCCCchHHHHHHH
Q 047171 488 SERIVQEALDQASQGRTMIIIAHRLSTIRKADLIGVLQSGRVIESGSHDVLMQMNNGEGGAYSKMVQL 555 (1224)
Q Consensus 488 ~~~~i~~~l~~~~~~~t~i~i~H~l~~~~~ad~i~vl~~G~i~~~g~~~~l~~~~~~~~~~y~~~~~~ 555 (1224)
+++.+.. +|||+++++.||+| +|++|+|++.|+|+++ ++.|++++..
T Consensus 228 ~~~~i~~-------------ltH~~~~~~~aD~i-vl~~G~iv~~g~~~el-------~~~y~~l~~~ 274 (305)
T 2v9p_A 228 AEDRYLY-------------LHSRVQTFRFEQPC-TDESGEQPFNITDADW-------KSFFVRLWGR 274 (305)
T ss_dssp TCGGGGG-------------GTTTEEEEECCCCC-CCC---CCCCCCHHHH-------HHHHHHSTTT
T ss_pred HHHHHHH-------------HhCCHHHHHhCCEE-EEeCCEEEEeCCHHHH-------HHHHHHHHHH
Confidence 9888752 29999999999999 9999999999999999 3577777653
No 108
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.97 E-value=5e-31 Score=320.12 Aligned_cols=191 Identities=21% Similarity=0.279 Sum_probs=155.2
Q ss_pred cEEEEeEEEECCCC---------CCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcccEEec
Q 047171 327 EIEFKDVDFSYPTR---------PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVN 397 (1224)
Q Consensus 327 ~i~~~~v~f~y~~~---------~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~ 397 (1224)
.++++|++++|++. ++++++||+||||||||||+++|+|+++|++|+|.++|. .++|++
T Consensus 269 ~l~~~~l~~~~~~~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------~i~~~~ 336 (538)
T 3ozx_A 269 KMKWTKIIKKLGDFQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQ------------ILSYKP 336 (538)
T ss_dssp EEEECCEEEEETTEEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCC------------CEEEEC
T ss_pred eEEEcceEEEECCEEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCe------------eeEeec
Confidence 47888888888542 357899999999999999999999999999999998763 589999
Q ss_pred CCCCC-CcccHHHHHhcCCCCC--CHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCCE
Q 047171 398 QEPIL-FSTSIKENILIGKPGA--SMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKI 474 (1224)
Q Consensus 398 Q~~~l-f~~ti~~ni~~g~~~~--~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~i 474 (1224)
|++.. +..||+||+.+..... ...+ .+.+.++.+ |+.........+||||||||++|||||+.+|+|
T Consensus 337 q~~~~~~~~tv~~~l~~~~~~~~~~~~~--------~~~~~l~~~--~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~l 406 (538)
T 3ozx_A 337 QRIFPNYDGTVQQYLENASKDALSTSSW--------FFEEVTKRL--NLHRLLESNVNDLSGGELQKLYIAATLAKEADL 406 (538)
T ss_dssp SSCCCCCSSBHHHHHHHHCSSTTCTTSH--------HHHHTTTTT--TGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSE
T ss_pred hhcccccCCCHHHHHHHhhhhccchhHH--------HHHHHHHHc--CCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCE
Confidence 99864 4679999998743211 1111 012333444 556667778899999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEeCCcchhhc-cCEEEEEeC--ceEEeecChHHHH
Q 047171 475 LLLDEATSALDAESERIVQEALDQAS--QGRTMIIIAHRLSTIRK-ADLIGVLQS--GRVIESGSHDVLM 539 (1224)
Q Consensus 475 lilDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~i~H~l~~~~~-ad~i~vl~~--G~i~~~g~~~~l~ 539 (1224)
|||||||++||+.+...+.+.|+++. .|+|+|+|||+++.+.. ||||+||++ |++...+++.++.
T Consensus 407 LlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~~~~aDri~vl~~~~~~~~~~~~~~~~~ 476 (538)
T 3ozx_A 407 YVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVFKGEPEKAGLATSPVTLK 476 (538)
T ss_dssp EEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHH
T ss_pred EEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceeccCCChHHHH
Confidence 99999999999999999999998864 58999999999999976 999999986 5566666665543
No 109
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.96 E-value=7.2e-30 Score=313.09 Aligned_cols=195 Identities=18% Similarity=0.302 Sum_probs=148.9
Q ss_pred EEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceE-----------EECCccCCCCCHH
Q 047171 982 NVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSV-----------MVDERNIKSYNLR 1050 (1224)
Q Consensus 982 ~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I-----------~idG~di~~~~~~ 1050 (1224)
|++++|.. ....|++++ .+++||.+||+||||||||||+++|.|+++|++|+| .++|.++..+...
T Consensus 82 ~~~~~Y~~--~~~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~~~~~~g~~~~~~~~~ 158 (608)
T 3j16_B 82 HVTHRYSA--NSFKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTK 158 (608)
T ss_dssp TEEEECST--TSCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHHHHHTTTSTHHHHHHH
T ss_pred CeEEEECC--CceeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceEecccchhhhhheecChhhhhhhhH
Confidence 46889963 234677777 699999999999999999999999999999999998 3455544433333
Q ss_pred HHhcceE--EEecCCCC----Cc---ccHHHHHccCCCCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHH
Q 047171 1051 KLRSCIA--LVSQEPTL----FA---GTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQ 1121 (1224)
Q Consensus 1051 ~lR~~i~--~V~Qdp~L----F~---gTIreNl~~~~~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQ 1121 (1224)
.+++.+. +.+|.... +. .++.+++.... ...++++.++++..++ +........+|||||
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~-~~~~~~~~~~l~~~gl-----------~~~~~~~~~~LSgGe 226 (608)
T 3j16_B 159 MLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRM-EKSPEDVKRYIKILQL-----------ENVLKRDIEKLSGGE 226 (608)
T ss_dssp HHHTSCCCEEECCCTTTHHHHCSSSSSHHHHHHHHHC-CSCHHHHHHHHHHHTC-----------TGGGGSCTTTCCHHH
T ss_pred HHHHhhhhhhchhhhhhhhhhhcchhhHHHHHHhhhh-hhHHHHHHHHHHHcCC-----------cchhCCChHHCCHHH
Confidence 4444443 33443221 11 26777765432 2245666666665554 333344556799999
Q ss_pred HHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh-cCEEEEEeCCE
Q 047171 1122 KQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMM-VGRTCVVVAHRLSTIQK-ADNIVVIKNGK 1191 (1224)
Q Consensus 1122 rQRlaLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-aD~I~vl~~G~ 1191 (1224)
|||++|||||+++|+|||||||||+||+.+...+.+.|+++. +|+|+|+|||+++.+.. ||+|++|++|.
T Consensus 227 ~Qrv~iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~~~~~~~drv~vl~~~~ 298 (608)
T 3j16_B 227 LQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIYGVP 298 (608)
T ss_dssp HHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCHHHHHHHCSEEEEEESCT
T ss_pred HHHHHHHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCc
Confidence 999999999999999999999999999999999999999876 47899999999999976 99999998764
No 110
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.95 E-value=4.9e-29 Score=297.87 Aligned_cols=201 Identities=19% Similarity=0.249 Sum_probs=153.0
Q ss_pred ceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccC--------------------------------------CCCce
Q 047171 995 IFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYD--------------------------------------PQSGS 1036 (1224)
Q Consensus 995 vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~--------------------------------------p~~G~ 1036 (1224)
+++++||++++| +++|+|+||||||||+++|.++.. +.+|+
T Consensus 50 ~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~~~ 128 (415)
T 4aby_A 50 TITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRGA 128 (415)
T ss_dssp TEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCEE
T ss_pred ceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCceE
Confidence 799999999999 999999999999999999966553 45789
Q ss_pred EEECCccCCCCCHHHHhcc-eEEEecCCCCCcccHHHHHccCCCCCCH--------------------------------
Q 047171 1037 VMVDERNIKSYNLRKLRSC-IALVSQEPTLFAGTIRQNIVYGKEVATE-------------------------------- 1083 (1224)
Q Consensus 1037 I~idG~di~~~~~~~lR~~-i~~V~Qdp~LF~gTIreNl~~~~~~~~d-------------------------------- 1083 (1224)
+++||.+++..++..+++. +++++|++.++-.+..++..+.+.....
T Consensus 129 i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~~~ 208 (415)
T 4aby_A 129 ARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLLSPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERLQASESSKHPT 208 (415)
T ss_dssp EEETTEEECHHHHHHHHTTTEEEETTTCTTTTSSHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC----------
T ss_pred EEECCEECCHHHHHHHHhhceEEecCcccccccCHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHhhhhhhcCc
Confidence 9999999987777887777 8999999988877665554433221110
Q ss_pred ------------HHHHHHHH------H-------HhHHHHHHhc--c----------------ccccc---ccCCCCCC-
Q 047171 1084 ------------AEIRKAAV------L-------ANAHEFISST--E----------------DGYDT---YCGERGVQ- 1116 (1224)
Q Consensus 1084 ------------eei~~al~------~-------a~l~~~I~~l--p----------------~gldt---~vge~G~~- 1116 (1224)
+++.+... . ..+.+.+..+ | .|++. .+..++..
T Consensus 209 ~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 288 (415)
T 4aby_A 209 SLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSANPGEE 288 (415)
T ss_dssp -CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESSSSCC
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcCCCCc
Confidence 00000000 0 0111112221 1 12222 33444444
Q ss_pred -------CChHHHHHHHHHHHHccCC--CEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEE
Q 047171 1117 -------LSGGQKQRIALARAVLKNP--MILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLSTIQKADNIVVI 1187 (1224)
Q Consensus 1117 -------LSGGQrQRlaLARAll~~p--~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~aD~I~vl 1187 (1224)
||||||||++|||+|+.+| +||||||||++||+++.+.|.+.|+++.+++|||+|||+++.+..||+|++|
T Consensus 289 ~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~itH~~~~~~~~d~i~~l 368 (415)
T 4aby_A 289 LGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAARAHHHYKV 368 (415)
T ss_dssp CCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHTTCSEEEEE
T ss_pred ccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHhhcCeEEEE
Confidence 8999999999999999999 9999999999999999999999999988889999999999988889999999
Q ss_pred ----eCCEEEEec
Q 047171 1188 ----KNGKVVEQG 1196 (1224)
Q Consensus 1188 ----~~G~Ive~G 1196 (1224)
++|+++...
T Consensus 369 ~k~~~~G~~~~~~ 381 (415)
T 4aby_A 369 EKQVEDGRTVSHV 381 (415)
T ss_dssp EEEEETTEEEEEE
T ss_pred EEeccCCceEEEE
Confidence 999987653
No 111
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.95 E-value=5.8e-32 Score=321.77 Aligned_cols=192 Identities=14% Similarity=0.122 Sum_probs=155.8
Q ss_pred ccEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCc-e-EEECCccCCCCCHHHHh
Q 047171 976 GFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSG-S-VMVDERNIKSYNLRKLR 1053 (1224)
Q Consensus 976 g~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G-~-I~idG~di~~~~~~~lR 1053 (1224)
+.++++||+++|+ ++||++++|++++|+||||||||||+++|+|++.|++| + |++|| + .|
T Consensus 117 ~mi~~~nl~~~y~---------~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg-~--------~~ 178 (460)
T 2npi_A 117 TMKYIYNLHFMLE---------KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINL-D--------PQ 178 (460)
T ss_dssp THHHHHHHHHHHH---------HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEEC-C--------TT
T ss_pred chhhhhhhhehhh---------cCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcC-C--------cc
Confidence 3578888888872 79999999999999999999999999999999999999 9 99998 1 37
Q ss_pred cceEEEecCCCCCc----ccHHHHHccCCCC---C-CHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHH
Q 047171 1054 SCIALVSQEPTLFA----GTIRQNIVYGKEV---A-TEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRI 1125 (1224)
Q Consensus 1054 ~~i~~V~Qdp~LF~----gTIreNl~~~~~~---~-~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRl 1125 (1224)
+.+++|||++.+|. .|++||+ ++... . .++.+.++++.. |++.... ..+||||||||+
T Consensus 179 ~~i~~vpq~~~l~~~~~~~tv~eni-~~~~~~~~~~~~~~~~~ll~~~-----------gl~~~~~--~~~LSgGq~qrl 244 (460)
T 2npi_A 179 QPIFTVPGCISATPISDILDAQLPT-WGQSLTSGATLLHNKQPMVKNF-----------GLERINE--NKDLYLECISQL 244 (460)
T ss_dssp SCSSSCSSCCEEEECCSCCCTTCTT-CSCBCBSSCCSSCCBCCEECCC-----------CSSSGGG--CHHHHHHHHHHH
T ss_pred CCeeeeccchhhcccccccchhhhh-cccccccCcchHHHHHHHHHHh-----------CCCcccc--hhhhhHHHHHHH
Confidence 88999999996543 5899999 65321 0 111122222222 4444432 668999999999
Q ss_pred HHHHH--HccCCCE----EEEec-cCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCch------hhhh-cCE-----EEE
Q 047171 1126 ALARA--VLKNPMI----LLLDE-ATSALDSASENLVQEALEKMMVGRTCVVVAHRLS------TIQK-ADN-----IVV 1186 (1224)
Q Consensus 1126 aLARA--ll~~p~I----LlLDE-aTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~------ti~~-aD~-----I~v 1186 (1224)
+|||| |+++|++ ||||| ||++||+. .+.+.+.+++. ++|+|+|+|+.+ .+.. ||+ |++
T Consensus 245 alAra~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~~~~--~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~ 321 (460)
T 2npi_A 245 GQVVGQRLHLDPQVRRSGCIVDTPSISQLDEN-LAELHHIIEKL--NVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFF 321 (460)
T ss_dssp HHHHHHHHHHCHHHHHSCEEEECCCGGGSCSS-CHHHHHHHHHT--TCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEE
T ss_pred HHHHHHHhccCcccCcceEEEeCCcccccChh-HHHHHHHHHHh--CCCEEEEEccCchhhhHHHHHHhcccccCCEEEE
Confidence 99999 9999999 99999 99999999 77777877765 789999999987 5544 999 999
Q ss_pred Ee-CCEEEEecChhHHhh
Q 047171 1187 IK-NGKVVEQGTQSSLLS 1203 (1224)
Q Consensus 1187 l~-~G~Ive~Gt~~eLl~ 1203 (1224)
|+ +|+|+ .|+++++.+
T Consensus 322 l~k~G~iv-~g~~~~~~~ 338 (460)
T 2npi_A 322 IPKLDGVS-AVDDVYKRS 338 (460)
T ss_dssp ECCCTTCC-CCCHHHHHH
T ss_pred EeCCCcEE-ECCHHHHhh
Confidence 99 99999 999998854
No 112
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.95 E-value=3.2e-28 Score=308.20 Aligned_cols=107 Identities=34% Similarity=0.540 Sum_probs=95.7
Q ss_pred HHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEe
Q 047171 434 DFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDP---KILLLDEATSALDAESERIVQEALDQAS-QGRTMIIIA 509 (1224)
Q Consensus 434 ~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~---~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~i~ 509 (1224)
+.+..+.-|+ ..+|+.+.+|||||||||+|||||+++| +||||||||++||+.+++.+++.|+++. +|+|+|+|+
T Consensus 787 ~~L~~vGL~~-~~lgq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~ 865 (916)
T 3pih_A 787 QVLHDVGLGY-VKLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIE 865 (916)
T ss_dssp HHHHHTTGGG-SBTTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred HHHHHcCCch-hhccCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 4555563343 3478999999999999999999999876 7999999999999999999999998864 689999999
Q ss_pred CCcchhhccCEEEEE------eCceEEeecChHHHHhh
Q 047171 510 HRLSTIRKADLIGVL------QSGRVIESGSHDVLMQM 541 (1224)
Q Consensus 510 H~l~~~~~ad~i~vl------~~G~i~~~g~~~~l~~~ 541 (1224)
|+++.++.||+|++| ++|+|+++|+|+|+++.
T Consensus 866 HdL~~i~~ADrIivLgp~gg~~~G~Iv~~Gtpeel~~~ 903 (916)
T 3pih_A 866 HNLDVIKNADHIIDLGPEGGKEGGYIVATGTPEEIAKN 903 (916)
T ss_dssp CCHHHHTTCSEEEEEESSSGGGCCEEEEEESHHHHHSC
T ss_pred CCHHHHHhCCEEEEecCCCCCCCCEEEEEcCHHHHHhC
Confidence 999999999999999 89999999999999986
No 113
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.94 E-value=3.2e-26 Score=273.40 Aligned_cols=200 Identities=16% Similarity=0.238 Sum_probs=146.3
Q ss_pred EEeEEEECCCCCCCCEEEEEcCCCCcHHHHHHHHhcCCC--------------------------------------CCC
Q 047171 330 FKDVDFSYPTRPDTPTIGLVGSSGSGKSTVISLLERFYD--------------------------------------PVK 371 (1224)
Q Consensus 330 ~~~v~f~y~~~~~~~~~~ivG~sGsGKSTl~~ll~~~~~--------------------------------------~~~ 371 (1224)
+++++|..+ ++ +++|+||||||||||+++|.++.. +.+
T Consensus 51 l~~v~l~~~---~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~ 126 (415)
T 4aby_A 51 ITQLELELG---GG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGR 126 (415)
T ss_dssp EEEEEEECC---SS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSC
T ss_pred eeeEEEecC---CC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCc
Confidence 577788763 46 999999999999999999966553 457
Q ss_pred cEEEECCEecCCCCHHHHhcc-cEEecCCCCCCcccHHHHHhcCCCCCCH------------------------------
Q 047171 372 GNILLDGHKIKKLQLKWLRSQ-MGLVNQEPILFSTSIKENILIGKPGASM------------------------------ 420 (1224)
Q Consensus 372 G~i~~~g~~~~~~~~~~~r~~-i~~v~Q~~~lf~~ti~~ni~~g~~~~~~------------------------------ 420 (1224)
|++++||++++..+...+.+. +++++|++.++..+..++..|-......
T Consensus 127 ~~i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~ 206 (415)
T 4aby_A 127 GAARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLLSPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERLQASESSKH 206 (415)
T ss_dssp EEEEETTEEECHHHHHHHHTTTEEEETTTCTTTTSSHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred eEEEECCEECCHHHHHHHHhhceEEecCcccccccCHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence 899999999987666777666 8999999877755554443332111100
Q ss_pred --------------HHHHHHH------HH-------hcHHHHHHhc--cc----------------cccc---cccCCCC
Q 047171 421 --------------ETVVKAA------QA-------ANVHDFIMKL--ND----------------GYET---KVGQFGV 452 (1224)
Q Consensus 421 --------------~~~~~~~------~~-------~~~~~~i~~l--~~----------------g~~t---~~~~~g~ 452 (1224)
+++.+.+ +. ..+.+.+..+ |. |.+. .++.++.
T Consensus 207 ~~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 286 (415)
T 4aby_A 207 PTSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSANPG 286 (415)
T ss_dssp ---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESSSS
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcCCC
Confidence 0000000 00 0111222222 11 2222 3444444
Q ss_pred C--------CChHHHHHHHHHHHhccCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCCcchhhccCEEE
Q 047171 453 Q--------LSGGQKQRIAIARALIRDP--KILLLDEATSALDAESERIVQEALDQASQGRTMIIIAHRLSTIRKADLIG 522 (1224)
Q Consensus 453 ~--------LSgGq~qriaiARal~~~~--~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~i~H~l~~~~~ad~i~ 522 (1224)
. ||||||||++|||+|+.+| ++|||||||++||+.+...+.+.|+++.+|+|+|+|||+++.+..||+|+
T Consensus 287 ~~~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~itH~~~~~~~~d~i~ 366 (415)
T 4aby_A 287 EELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAARAHHHY 366 (415)
T ss_dssp CCCCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHTTCSEEE
T ss_pred CcccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHhhcCeEE
Confidence 4 8999999999999999999 99999999999999999999999999878999999999999888899999
Q ss_pred EE----eCceEEeec
Q 047171 523 VL----QSGRVIESG 533 (1224)
Q Consensus 523 vl----~~G~i~~~g 533 (1224)
+| ++|+++...
T Consensus 367 ~l~k~~~~G~~~~~~ 381 (415)
T 4aby_A 367 KVEKQVEDGRTVSHV 381 (415)
T ss_dssp EEEEEEETTEEEEEE
T ss_pred EEEEeccCCceEEEE
Confidence 99 999987653
No 114
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.93 E-value=2.4e-26 Score=264.01 Aligned_cols=202 Identities=20% Similarity=0.230 Sum_probs=144.7
Q ss_pred eceeEEEeCCcEEEEEcCCCCChHHHHHHHhcc-----------------------------------------------
Q 047171 997 KGLTLKIEAGKTVALVGQSGSGKSTIIGLIERF----------------------------------------------- 1029 (1224)
Q Consensus 997 ~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl----------------------------------------------- 1029 (1224)
++++|++.+| .++|+|+||||||||+.+|..+
T Consensus 16 ~~~~l~~~~g-~~~i~G~NGsGKS~ll~ai~~llg~~~~~s~r~~~~~~li~~g~~~~~~~~~~~v~~~f~~~~~~~~i~ 94 (322)
T 1e69_A 16 RPSLIGFSDR-VTAIVGPNGSGKSNIIDAIKWVFGEQSKKELRASEKFDMIFAGSENLPPAGSAYVELVFEENGEEITVA 94 (322)
T ss_dssp SCEEEECCSS-EEEEECCTTTCSTHHHHHHHHTSCC----------CCTTBCCCBTTBCCCSEEEEEEEEESSSCEEEEE
T ss_pred CCeEEecCCC-cEEEECCCCCcHHHHHHHHHHHhCCCchhhcccccHHHhhccCccCCCCCceEEEEEEEEeCCeEEEEE
Confidence 3678899999 9999999999999999999833
Q ss_pred ---cCCCCceEEECCccCCCCCHHHHhcceEEEecCCCCC-cccHHHHHccCCCCC----------------CHHHHHHH
Q 047171 1030 ---YDPQSGSVMVDERNIKSYNLRKLRSCIALVSQEPTLF-AGTIRQNIVYGKEVA----------------TEAEIRKA 1089 (1224)
Q Consensus 1030 ---~~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qdp~LF-~gTIreNl~~~~~~~----------------~deei~~a 1089 (1224)
+.+.+|.+.+||.+++..+...++..+++.||+..++ .|++.+|+... |.. +.+++.+.
T Consensus 95 r~~~~~~~~~~~ing~~~~~~~~~~~~~~~g~~~~~~~lv~qg~i~~~~~~~-p~~rr~~ld~~~~~~~~~~~y~rv~e~ 173 (322)
T 1e69_A 95 RELKRTGENTYYLNGSPVRLKDIRDRFAGTGLGVDFYSIVGQGQIDRIVNAS-PEELRLESSKHPTSLVPRGSYQRVNES 173 (322)
T ss_dssp EEEETTSCEEEEETTEEECHHHHHHHTTTSSTTTTCCSEEEHHHHHHHHTC----------------------CHHHHHH
T ss_pred EEEEcCCceEEEECCcCccHHHHHHHHHHcCCChhheeeEehhhHHHHHhcc-HHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 2344678999999886666777777899999998765 89999998653 210 00112221
Q ss_pred HHHHh------------H-HHHHHhcccccccccC------CCCCCCChHHHHHHHHHHHHc----cCCCEEEEeccCCC
Q 047171 1090 AVLAN------------A-HEFISSTEDGYDTYCG------ERGVQLSGGQKQRIALARAVL----KNPMILLLDEATSA 1146 (1224)
Q Consensus 1090 l~~a~------------l-~~~I~~lp~gldt~vg------e~G~~LSGGQrQRlaLARAll----~~p~ILlLDEaTSa 1146 (1224)
....- + .+....++.|+++.++ .....||||||||++|||||. ++|++|||||||++
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~ 253 (322)
T 1e69_A 174 FNRFISLLFFGGEGRLNIVSEAKSILDAGFEISIRKPGRRDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSP 253 (322)
T ss_dssp HHHHHHHHHTSCEEEC--------------CCEEECTTSCCCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSS
T ss_pred HHHHHHHhcCCceEEEEeeccccccccCCeEEEEecCccccCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCC
Confidence 11100 0 0001234556665443 234689999999999999996 78999999999999
Q ss_pred CCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEE--EEEeCCEE-EEecChhH
Q 047171 1147 LDSASENLVQEALEKMMVGRTCVVVAHRLSTIQKADNI--VVIKNGKV-VEQGTQSS 1200 (1224)
Q Consensus 1147 LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~aD~I--~vl~~G~I-ve~Gt~~e 1200 (1224)
||+.+.+.+.+.|++..+++|+|+|||+.+.+..||++ ++|++|+. +...+.++
T Consensus 254 LD~~~~~~l~~~l~~~~~~~~vi~~tH~~~~~~~~d~~~~v~~~~g~s~~~~~~~~~ 310 (322)
T 1e69_A 254 LDDYNAERFKRLLKENSKHTQFIVITHNKIVMEAADLLHGVTMVNGVSAIVPVEVEK 310 (322)
T ss_dssp CCHHHHHHHHHHHHHHTTTSEEEEECCCTTGGGGCSEEEEEEESSSCEEEEECCC--
T ss_pred CCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHhhCceEEEEEEeCCEEEEEEEEcch
Confidence 99999999999999887788999999998878889987 88888764 33334444
No 115
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.93 E-value=2.9e-26 Score=288.08 Aligned_cols=108 Identities=28% Similarity=0.473 Sum_probs=96.4
Q ss_pred HHHHHHhccccccc-cccCCCCCCChHHHHHHHHHHHhccC---CCEEEEeCCCCCCCHHHHHHHHHHHHHH-cCCCeEE
Q 047171 432 VHDFIMKLNDGYET-KVGQFGVQLSGGQKQRIAIARALIRD---PKILLLDEATSALDAESERIVQEALDQA-SQGRTMI 506 (1224)
Q Consensus 432 ~~~~i~~l~~g~~t-~~~~~g~~LSgGq~qriaiARal~~~---~~ililDE~ts~lD~~~~~~i~~~l~~~-~~~~t~i 506 (1224)
+.+.++.+ |+.. .+++...+|||||||||+|||+|+++ |+||||||||++||+.+.+.+.+.|+++ .+|.|+|
T Consensus 710 ~~~~L~~~--gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVI 787 (842)
T 2vf7_A 710 ALDTLREV--GLGYLRLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVI 787 (842)
T ss_dssp HHHHHHHT--TCTTSBTTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHc--CCCcccccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEE
Confidence 34566777 5544 46888999999999999999999996 7999999999999999999999999886 4689999
Q ss_pred EEeCCcchhhccCEEEEE------eCceEEeecChHHHHhh
Q 047171 507 IIAHRLSTIRKADLIGVL------QSGRVIESGSHDVLMQM 541 (1224)
Q Consensus 507 ~i~H~l~~~~~ad~i~vl------~~G~i~~~g~~~~l~~~ 541 (1224)
+|||+++.+..||+|++| ++|+|++.|+++++.+.
T Consensus 788 visHdl~~i~~aDrii~L~p~~g~~~G~Iv~~g~~~el~~~ 828 (842)
T 2vf7_A 788 AVEHKMQVVAASDWVLDIGPGAGEDGGRLVAQGTPAEVAQA 828 (842)
T ss_dssp EECCCHHHHTTCSEEEEECSSSGGGCCSEEEEECHHHHTTC
T ss_pred EEcCCHHHHHhCCEEEEECCCCCCCCCEEEEEcCHHHHHhC
Confidence 999999999779999999 79999999999999875
No 116
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.93 E-value=3.8e-26 Score=286.05 Aligned_cols=107 Identities=29% Similarity=0.517 Sum_probs=95.8
Q ss_pred HHHHHhccccccc-cccCCCCCCChHHHHHHHHHHHhccCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEE
Q 047171 433 HDFIMKLNDGYET-KVGQFGVQLSGGQKQRIAIARALIRDP---KILLLDEATSALDAESERIVQEALDQAS-QGRTMII 507 (1224)
Q Consensus 433 ~~~i~~l~~g~~t-~~~~~g~~LSgGq~qriaiARal~~~~---~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~ 507 (1224)
.+.++.+ |+.. ..++...+|||||||||+|||||+++| +||||||||++||+.+.+.+.+.|+++. +|+|+|+
T Consensus 826 ~~~L~~~--gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIv 903 (972)
T 2r6f_A 826 LETLYDV--GLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLV 903 (972)
T ss_dssp HHHHHHT--TCSSSBTTCCGGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHc--CCCcccccCchhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 3456666 5655 578889999999999999999999875 9999999999999999999999998764 6899999
Q ss_pred EeCCcchhhccCEEEEE------eCceEEeecChHHHHhh
Q 047171 508 IAHRLSTIRKADLIGVL------QSGRVIESGSHDVLMQM 541 (1224)
Q Consensus 508 i~H~l~~~~~ad~i~vl------~~G~i~~~g~~~~l~~~ 541 (1224)
|||+++.+..||+|++| ++|+|++.|+++++.+.
T Consensus 904 isHdl~~i~~aDrIivL~p~gG~~~G~Iv~~g~~~el~~~ 943 (972)
T 2r6f_A 904 IEHNLDVIKTADYIIDLGPEGGDRGGQIVAVGTPEEVAEV 943 (972)
T ss_dssp ECCCHHHHTTCSEEEEECSSSTTSCCSEEEEESHHHHHTC
T ss_pred EcCCHHHHHhCCEEEEEcCCCCCCCCEEEEecCHHHHHhC
Confidence 99999999889999999 78999999999999875
No 117
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.93 E-value=3.4e-28 Score=289.31 Aligned_cols=191 Identities=13% Similarity=0.111 Sum_probs=148.1
Q ss_pred cEEEEeEEEECCC----CCCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCc-E-EEECCEecCCCCHHHHhcccEEecCCC
Q 047171 327 EIEFKDVDFSYPT----RPDTPTIGLVGSSGSGKSTVISLLERFYDPVKG-N-ILLDGHKIKKLQLKWLRSQMGLVNQEP 400 (1224)
Q Consensus 327 ~i~~~~v~f~y~~----~~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G-~-i~~~g~~~~~~~~~~~r~~i~~v~Q~~ 400 (1224)
-++++||+|+|++ -+++++++|+||||||||||+++|+|++.|++| + |++|| + .|+.++||||++
T Consensus 118 mi~~~nl~~~y~~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg-~--------~~~~i~~vpq~~ 188 (460)
T 2npi_A 118 MKYIYNLHFMLEKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINL-D--------PQQPIFTVPGCI 188 (460)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEEC-C--------TTSCSSSCSSCC
T ss_pred hhhhhhhhehhhcCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcC-C--------ccCCeeeeccch
Confidence 4677788887742 246789999999999999999999999999999 9 99998 2 367899999998
Q ss_pred CCCc----ccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHH--hccCCCE
Q 047171 401 ILFS----TSIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARA--LIRDPKI 474 (1224)
Q Consensus 401 ~lf~----~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARa--l~~~~~i 474 (1224)
.+|. .|++||+ |+........ ....+.+.+..+ |++.... +.+||||||||++|||| |+.+|++
T Consensus 189 ~l~~~~~~~tv~eni-~~~~~~~~~~-----~~~~~~~ll~~~--gl~~~~~--~~~LSgGq~qrlalAra~rL~~~p~i 258 (460)
T 2npi_A 189 SATPISDILDAQLPT-WGQSLTSGAT-----LLHNKQPMVKNF--GLERINE--NKDLYLECISQLGQVVGQRLHLDPQV 258 (460)
T ss_dssp EEEECCSCCCTTCTT-CSCBCBSSCC-----SSCCBCCEECCC--CSSSGGG--CHHHHHHHHHHHHHHHHHHHHHCHHH
T ss_pred hhcccccccchhhhh-cccccccCcc-----hHHHHHHHHHHh--CCCcccc--hhhhhHHHHHHHHHHHHHHhccCccc
Confidence 6543 4899999 7642100000 000111122222 5555443 78999999999999999 9999999
Q ss_pred ----EEEeC-CCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCCcc------hhhc-cCE-----EEEEe-CceEEeecChH
Q 047171 475 ----LLLDE-ATSALDAESERIVQEALDQASQGRTMIIIAHRLS------TIRK-ADL-----IGVLQ-SGRVIESGSHD 536 (1224)
Q Consensus 475 ----lilDE-~ts~lD~~~~~~i~~~l~~~~~~~t~i~i~H~l~------~~~~-ad~-----i~vl~-~G~i~~~g~~~ 536 (1224)
||||| ||++||+. .+.+.+.+++. ++|+|+|+|+.+ .+.. ||+ |++|+ +|+++ .|+++
T Consensus 259 ~~sGLlLDEpPts~LD~~-~~~l~~l~~~~--~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv-~g~~~ 334 (460)
T 2npi_A 259 RRSGCIVDTPSISQLDEN-LAELHHIIEKL--NVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS-AVDDV 334 (460)
T ss_dssp HHSCEEEECCCGGGSCSS-CHHHHHHHHHT--TCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC-CCCHH
T ss_pred CcceEEEeCCcccccChh-HHHHHHHHHHh--CCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE-ECCHH
Confidence 99999 99999999 66777776654 789999999988 5544 999 99999 99999 99998
Q ss_pred HHHh
Q 047171 537 VLMQ 540 (1224)
Q Consensus 537 ~l~~ 540 (1224)
++.+
T Consensus 335 ~~~~ 338 (460)
T 2npi_A 335 YKRS 338 (460)
T ss_dssp HHHH
T ss_pred HHhh
Confidence 8743
No 118
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.92 E-value=1.2e-25 Score=282.57 Aligned_cols=106 Identities=28% Similarity=0.496 Sum_probs=95.4
Q ss_pred HHHHhccccccc-cccCCCCCCChHHHHHHHHHHHhccCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEE
Q 047171 434 DFIMKLNDGYET-KVGQFGVQLSGGQKQRIAIARALIRDP---KILLLDEATSALDAESERIVQEALDQAS-QGRTMIII 508 (1224)
Q Consensus 434 ~~i~~l~~g~~t-~~~~~g~~LSgGq~qriaiARal~~~~---~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~i 508 (1224)
+.++.+ |+.. ..++...+|||||||||+|||||+++| +||||||||++||+.+.+.+.+.|+++. +|.|+|+|
T Consensus 845 ~~L~~l--gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvi 922 (993)
T 2ygr_A 845 RTLVDV--GLGYVRLGQPAPTLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVI 922 (993)
T ss_dssp HHHHHT--TGGGSBTTCCGGGSCHHHHHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHc--CCCcccccCccccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 456666 5655 578899999999999999999999875 9999999999999999999999998764 68999999
Q ss_pred eCCcchhhccCEEEEE------eCceEEeecChHHHHhh
Q 047171 509 AHRLSTIRKADLIGVL------QSGRVIESGSHDVLMQM 541 (1224)
Q Consensus 509 ~H~l~~~~~ad~i~vl------~~G~i~~~g~~~~l~~~ 541 (1224)
||+++.+..||+|++| ++|+|++.|+++++.+.
T Consensus 923 sHdl~~i~~aDrIivL~p~gg~~~G~Iv~~G~~~el~~~ 961 (993)
T 2ygr_A 923 EHNLDVIKTSDWIIDLGPEGGAGGGTVVAQGTPEDVAAV 961 (993)
T ss_dssp CCCHHHHTTCSEEEEEESSSTTSCSEEEEEECHHHHHHC
T ss_pred cCCHHHHHhCCEEEEECCCcCCCCCEEEEecCHHHHHhC
Confidence 9999999889999999 68999999999999875
No 119
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.92 E-value=1.7e-27 Score=254.12 Aligned_cols=159 Identities=16% Similarity=0.185 Sum_probs=103.4
Q ss_pred ccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcceEEEecCCCCCcccHHH
Q 047171 993 QMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIALVSQEPTLFAGTIRQ 1072 (1224)
Q Consensus 993 ~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qdp~LF~gTIre 1072 (1224)
..+|+|+ ++||++||+||||||||||+++|+|+ +|++|+|. +.++.. +...+|++++||||++ +|
T Consensus 13 ~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~--~~~~~~-~~~~~~~~ig~v~q~~-------~e 77 (208)
T 3b85_A 13 KHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVS--RIILTR-PAVEAGEKLGFLPGTL-------NE 77 (208)
T ss_dssp HHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCS--EEEEEE-CSCCTTCCCCSSCC-----------
T ss_pred HHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeee--eEEecC-CchhhhcceEEecCCH-------HH
Confidence 3589996 89999999999999999999999999 99999994 333321 2234688999999998 66
Q ss_pred HH-ccCCCCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeccCCCCCHHH
Q 047171 1073 NI-VYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSAS 1151 (1224)
Q Consensus 1073 Nl-~~~~~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll~~p~ILlLDEaTSaLD~~t 1151 (1224)
|+ .++.+. .+.+........+.+.+.. | | |||||++|||||+.+|++||||||||+ +
T Consensus 78 nl~~~~~~~--~~~~~~~~~~~~~~~~l~~---g-----------l--Gq~qrv~lAraL~~~p~lllLDEPts~----~ 135 (208)
T 3b85_A 78 KIDPYLRPL--HDALRDMVEPEVIPKLMEA---G-----------I--VEVAPLAYMRGRTLNDAFVILDEAQNT----T 135 (208)
T ss_dssp --CTTTHHH--HHHHTTTSCTTHHHHHHHT---T-----------S--EEEEEGGGGTTCCBCSEEEEECSGGGC----C
T ss_pred HHHHHHHHH--HHHHHHhccHHHHHHHHHh---C-----------C--chHHHHHHHHHHhcCCCEEEEeCCccc----c
Confidence 76 332110 0000000000112222221 1 2 999999999999999999999999999 8
Q ss_pred HHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCEE
Q 047171 1152 ENLVQEALEKMMVGRTCVVVAHRLSTIQKADNIVVIKNGKV 1192 (1224)
Q Consensus 1152 e~~I~~~l~~~~~~~TvI~IaHrl~ti~~aD~I~vl~~G~I 1192 (1224)
.+.+.+.|+++.+++|+| |||+++.+. ++...++|..
T Consensus 136 ~~~l~~~l~~l~~g~tii-vtHd~~~~~---~~~~~~~G~~ 172 (208)
T 3b85_A 136 PAQMKMFLTRLGFGSKMV-VTGDITQVD---LPGGQKSGLR 172 (208)
T ss_dssp HHHHHHHHTTBCTTCEEE-EEEC---------------CCH
T ss_pred HHHHHHHHHHhcCCCEEE-EECCHHHHh---CcCCCCCcHH
Confidence 889999998874578999 999988664 3445566644
No 120
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.92 E-value=7.7e-25 Score=251.43 Aligned_cols=184 Identities=22% Similarity=0.314 Sum_probs=133.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC--------------------------------------------------CCCCcEE
Q 047171 345 TIGLVGSSGSGKSTVISLLERFY--------------------------------------------------DPVKGNI 374 (1224)
Q Consensus 345 ~~~ivG~sGsGKSTl~~ll~~~~--------------------------------------------------~~~~G~i 374 (1224)
.++|+||||||||||+++|..+. .+.+|.+
T Consensus 26 ~~~i~G~NGsGKS~ll~ai~~llg~~~~~s~r~~~~~~li~~g~~~~~~~~~~~v~~~f~~~~~~~~i~r~~~~~~~~~~ 105 (322)
T 1e69_A 26 VTAIVGPNGSGKSNIIDAIKWVFGEQSKKELRASEKFDMIFAGSENLPPAGSAYVELVFEENGEEITVARELKRTGENTY 105 (322)
T ss_dssp EEEEECCTTTCSTHHHHHHHHTSCC----------CCTTBCCCBTTBCCCSEEEEEEEEESSSCEEEEEEEEETTSCEEE
T ss_pred cEEEECCCCCcHHHHHHHHHHHhCCCchhhcccccHHHhhccCccCCCCCceEEEEEEEEeCCeEEEEEEEEEcCCceEE
Confidence 89999999999999999998432 3446789
Q ss_pred EECCEecCCCCHHHHhcccEEecCCCCCC-cccHHHHHhcCCCCC----------------CHHHHHHHHHHhc------
Q 047171 375 LLDGHKIKKLQLKWLRSQMGLVNQEPILF-STSIKENILIGKPGA----------------SMETVVKAAQAAN------ 431 (1224)
Q Consensus 375 ~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf-~~ti~~ni~~g~~~~----------------~~~~~~~~~~~~~------ 431 (1224)
++||.+++..+...+...+++.+|+..++ .+++.+|+... |.. +++++.+.....-
T Consensus 106 ~ing~~~~~~~~~~~~~~~g~~~~~~~lv~qg~i~~~~~~~-p~~rr~~ld~~~~~~~~~~~y~rv~e~~~~~~~~~~~~ 184 (322)
T 1e69_A 106 YLNGSPVRLKDIRDRFAGTGLGVDFYSIVGQGQIDRIVNAS-PEELRLESSKHPTSLVPRGSYQRVNESFNRFISLLFFG 184 (322)
T ss_dssp EETTEEECHHHHHHHTTTSSTTTTCCSEEEHHHHHHHHTC----------------------CHHHHHHHHHHHHHHHTS
T ss_pred EECCcCccHHHHHHHHHHcCCChhheeeEehhhHHHHHhcc-HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999886555666677899999988765 78999998753 211 1111222211100
Q ss_pred ------H-HHHHHhcccccccccc------CCCCCCChHHHHHHHHHHHhc----cCCCEEEEeCCCCCCCHHHHHHHHH
Q 047171 432 ------V-HDFIMKLNDGYETKVG------QFGVQLSGGQKQRIAIARALI----RDPKILLLDEATSALDAESERIVQE 494 (1224)
Q Consensus 432 ------~-~~~i~~l~~g~~t~~~------~~g~~LSgGq~qriaiARal~----~~~~ililDE~ts~lD~~~~~~i~~ 494 (1224)
+ .+....++.|+++.++ ..+.+||||||||++|||||+ .+|++|||||||++||+.....+.+
T Consensus 185 ~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~ 264 (322)
T 1e69_A 185 GEGRLNIVSEAKSILDAGFEISIRKPGRRDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKR 264 (322)
T ss_dssp CEEEC--------------CCEEECTTSCCCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHH
T ss_pred ceEEEEeeccccccccCCeEEEEecCccccCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHH
Confidence 0 0011234556665432 345789999999999999996 7899999999999999999999999
Q ss_pred HHHHHcCCCeEEEEeCCcchhhccCEE--EEEeCceE
Q 047171 495 ALDQASQGRTMIIIAHRLSTIRKADLI--GVLQSGRV 529 (1224)
Q Consensus 495 ~l~~~~~~~t~i~i~H~l~~~~~ad~i--~vl~~G~i 529 (1224)
.++++.+++|+|+|||+.+.+..||++ ++|++|+.
T Consensus 265 ~l~~~~~~~~vi~~tH~~~~~~~~d~~~~v~~~~g~s 301 (322)
T 1e69_A 265 LLKENSKHTQFIVITHNKIVMEAADLLHGVTMVNGVS 301 (322)
T ss_dssp HHHHHTTTSEEEEECCCTTGGGGCSEEEEEEESSSCE
T ss_pred HHHHhcCCCeEEEEECCHHHHhhCceEEEEEEeCCEE
Confidence 998887789999999998877789987 88888864
No 121
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.90 E-value=4.2e-24 Score=248.64 Aligned_cols=82 Identities=23% Similarity=0.357 Sum_probs=75.7
Q ss_pred CCCCCChHHHHHHHHHHHHc------cCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhhcCEEE
Q 047171 1113 RGVQLSGGQKQRIALARAVL------KNPMILLLDEATSALDSASENLVQEALEKMM-VGRTCVVVAHRLSTIQKADNIV 1185 (1224)
Q Consensus 1113 ~G~~LSGGQrQRlaLARAll------~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~aD~I~ 1185 (1224)
...+||||||||++|||||+ ++|++|||||||++||+.+.+.+.+.|+++. .|+|+|+|||+++.+..||+|+
T Consensus 276 ~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~~~~~d~~~ 355 (365)
T 3qf7_A 276 PARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREFSEAFDRKL 355 (365)
T ss_dssp EGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHHHTTCSCEE
T ss_pred CchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEE
Confidence 44579999999999999999 7999999999999999999999999998875 5799999999999988899999
Q ss_pred EEeCCEEEE
Q 047171 1186 VIKNGKVVE 1194 (1224)
Q Consensus 1186 vl~~G~Ive 1194 (1224)
+|++|++++
T Consensus 356 ~l~~G~i~~ 364 (365)
T 3qf7_A 356 RITGGVVVN 364 (365)
T ss_dssp EEETTEEC-
T ss_pred EEECCEEEe
Confidence 999999975
No 122
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.90 E-value=5.7e-27 Score=253.53 Aligned_cols=166 Identities=14% Similarity=0.162 Sum_probs=121.5
Q ss_pred cceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCH-HHHhcceEEEecCCCCCc-----
Q 047171 994 MIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNL-RKLRSCIALVSQEPTLFA----- 1067 (1224)
Q Consensus 994 ~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~-~~lR~~i~~V~Qdp~LF~----- 1067 (1224)
.-|+||||+|++|+++||+||||||||||+++|.|++ | |+|.+ |+++...+. ...|+.++|++|++.+|.
T Consensus 11 ~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 86 (218)
T 1z6g_A 11 SSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKLKN 86 (218)
T ss_dssp -----------CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHHHT
T ss_pred ccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhhhc
Confidence 3699999999999999999999999999999999999 6 99999 888755432 335788999999986664
Q ss_pred ------ccHHHHHccCCCCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHH-----HHHHccCCC
Q 047171 1068 ------GTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIAL-----ARAVLKNPM 1136 (1224)
Q Consensus 1068 ------gTIreNl~~~~~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaL-----ARAll~~p~ 1136 (1224)
+++++| .++. +++++.++++.. ....++ .+||||||||++| ||+++++|+
T Consensus 87 ~~~l~~~~~~~~-~~g~---~~~~i~~~l~~~------------~~~il~---~~lsggq~qR~~i~~~~~~~~ll~~~~ 147 (218)
T 1z6g_A 87 EDFLEYDNYANN-FYGT---LKSEYDKAKEQN------------KICLFE---MNINGVKQLKKSTHIKNALYIFIKPPS 147 (218)
T ss_dssp TCEEEEEEETTE-EEEE---EHHHHHHHHHTT------------CEEEEE---ECHHHHHHHTTCSSCCSCEEEEEECSC
T ss_pred cchhhhhhcccc-cCCC---cHHHHHHHHhCC------------CcEEEE---ecHHHHHHHHHHhcCCCcEEEEEeCcC
Confidence 334444 2332 234455544321 112222 5799999999999 999999999
Q ss_pred EEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeC
Q 047171 1137 ILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLSTIQKADNIVVIKN 1189 (1224)
Q Consensus 1137 ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~aD~I~vl~~ 1189 (1224)
+++|||||+++|.++++.|++.+.+..+++| ++| +..||+|+|+++
T Consensus 148 ~~~Lde~~~~~d~~~~~~i~~~l~~~~~~~~---~~h----~~~~d~iiv~~~ 193 (218)
T 1z6g_A 148 TDVLLSRLLTRNTENQEQIQKRMEQLNIELH---EAN----LLNFNLSIINDD 193 (218)
T ss_dssp HHHHHHHHHHTCCCCHHHHHHHHHHHHHHHH---HHT----TSCCSEEEECSS
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH---hhc----ccCCCEEEECCC
Confidence 9999999999999999999999988777777 788 577999988764
No 123
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.90 E-value=5e-25 Score=228.90 Aligned_cols=149 Identities=16% Similarity=0.173 Sum_probs=108.7
Q ss_pred ceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcceEEEecCCC--CCcccHHHHHc
Q 047171 998 GLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIALVSQEPT--LFAGTIRQNIV 1075 (1224)
Q Consensus 998 ~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qdp~--LF~gTIreNl~ 1075 (1224)
|+||++++||.++|+||||||||||++++.+ |...+ +.+.+| ++++|++. .+.++..+++.
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~------~~~~~--------~~d~~~---g~~~~~~~~~~~~~~~~~~~~ 63 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFK------PTEVI--------SSDFCR---GLMSDDENDQTVTGAAFDVLH 63 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSC------GGGEE--------EHHHHH---HHHCSSTTCGGGHHHHHHHHH
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHcc------CCeEE--------ccHHHH---HHhcCcccchhhHHHHHHHHH
Confidence 6899999999999999999999999999653 22222 233344 67788863 22333333221
Q ss_pred cCCCCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeccCCCCCHHHH---
Q 047171 1076 YGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASE--- 1152 (1224)
Q Consensus 1076 ~~~~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll~~p~ILlLDEaTSaLD~~te--- 1152 (1224)
... ...+..|+.+.+... ...|||||||++||||+..+|++|+|||||++||+.++
T Consensus 64 ------------~~~--------~~~~~~g~~~~~~~~-~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~ 122 (171)
T 4gp7_A 64 ------------YIV--------SKRLQLGKLTVVDAT-NVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRT 122 (171)
T ss_dssp ------------HHH--------HHHHHTTCCEEEESC-CCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCS
T ss_pred ------------HHH--------HHHHhCCCeEEEECC-CCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhccc
Confidence 110 111234555555433 45699999999999999999999999999999999944
Q ss_pred -------------HHHHHHHHHhc-CCCeEEEEccCchhhhhcCEE
Q 047171 1153 -------------NLVQEALEKMM-VGRTCVVVAHRLSTIQKADNI 1184 (1224)
Q Consensus 1153 -------------~~I~~~l~~~~-~~~TvI~IaHrl~ti~~aD~I 1184 (1224)
+.+++.|+++. +|.|+|+|||+++.+..++++
T Consensus 123 ~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~~~~~~~~~ 168 (171)
T 4gp7_A 123 DRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPEEVEEVVFE 168 (171)
T ss_dssp SCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHHHHHHEEEE
T ss_pred CCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHHHhhhhhhc
Confidence 77788766543 489999999999999888775
No 124
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.89 E-value=7.8e-25 Score=228.12 Aligned_cols=147 Identities=12% Similarity=0.140 Sum_probs=110.3
Q ss_pred EEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcceEEEecCCCCCcccHHHHHccCCCCCCHHHHH
Q 047171 1008 TVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIALVSQEPTLFAGTIRQNIVYGKEVATEAEIR 1087 (1224)
Q Consensus 1008 ~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qdp~LF~gTIreNl~~~~~~~~deei~ 1087 (1224)
+++|+||||||||||+++|+|++. |.++|.+..+......+++++|++|++ +..+|+. +.-.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~-----i~~~g~~~~~~~~~~~~~~ig~~~~~~-----~~~~~~~-~~~~------- 63 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG-----KRAIGFWTEEVRDPETKKRTGFRIITT-----EGKKKIF-SSKF------- 63 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG-----GGEEEEEEEEEC------CCEEEEEET-----TCCEEEE-EETT-------
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-----CcCCCEEhhhhccccccceeEEEeecC-----cHHHHHH-Hhhc-------
Confidence 689999999999999999999985 667887664443225678999999997 2233331 1000
Q ss_pred HHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHH-----HccCCCEEEEec--cCCCCCHHHHHHHHHHHH
Q 047171 1088 KAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARA-----VLKNPMILLLDE--ATSALDSASENLVQEALE 1160 (1224)
Q Consensus 1088 ~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARA-----ll~~p~ILlLDE--aTSaLD~~te~~I~~~l~ 1160 (1224)
.+ .+..+++.+.+||||||||++|||| ++.+|++||||| ||+++|+.+.+.+.+.++
T Consensus 64 --------------~~--~~~~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~ 127 (178)
T 1ye8_A 64 --------------FT--SKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMH 127 (178)
T ss_dssp --------------CC--CSSEETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHT
T ss_pred --------------CC--ccccccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHh
Confidence 00 0134566677899999999999996 999999999999 999999999999999997
Q ss_pred HhcCCCeEEEEcc---Cchhhhh-cCEEEEEeCCEEEE
Q 047171 1161 KMMVGRTCVVVAH---RLSTIQK-ADNIVVIKNGKVVE 1194 (1224)
Q Consensus 1161 ~~~~~~TvI~IaH---rl~ti~~-aD~I~vl~~G~Ive 1194 (1224)
+ .+.|+|+++| +++.+.. ||+ .+|+|.+
T Consensus 128 ~--~~~~~i~~~H~~h~~~~~~~i~~r----~~~~i~~ 159 (178)
T 1ye8_A 128 D--PNVNVVATIPIRDVHPLVKEIRRL----PGAVLIE 159 (178)
T ss_dssp C--TTSEEEEECCSSCCSHHHHHHHTC----TTCEEEE
T ss_pred c--CCCeEEEEEccCCCchHHHHHHhc----CCcEEEE
Confidence 6 4677999986 6666665 777 5677776
No 125
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.89 E-value=5.5e-26 Score=242.52 Aligned_cols=150 Identities=15% Similarity=0.189 Sum_probs=95.0
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcccEEecCCCCCCcccHHHHH-hcCCCCCCH
Q 047171 342 DTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFSTSIKENI-LIGKPGASM 420 (1224)
Q Consensus 342 ~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni-~~g~~~~~~ 420 (1224)
++++++|+||||||||||+++|+|+ +|++|+|. +.++.. +....|++||||+|++ +||+ .++.+. .
T Consensus 21 ~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~--~~~~~~-~~~~~~~~ig~v~q~~-------~enl~~~~~~~--~ 87 (208)
T 3b85_A 21 TNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVS--RIILTR-PAVEAGEKLGFLPGTL-------NEKIDPYLRPL--H 87 (208)
T ss_dssp HCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCS--EEEEEE-CSCCTTCCCCSSCC-------------CTTTHHH--H
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeee--eEEecC-CchhhhcceEEecCCH-------HHHHHHHHHHH--H
Confidence 4679999999999999999999999 99999994 333321 2224577899999997 6666 443110 0
Q ss_pred HHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc
Q 047171 421 ETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQAS 500 (1224)
Q Consensus 421 ~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~ 500 (1224)
+.+........+++.++. | | |||||++|||||+.+|++||||||||+ +...+.+.|.++.
T Consensus 88 ~~~~~~~~~~~~~~~l~~---g-----------l--Gq~qrv~lAraL~~~p~lllLDEPts~----~~~~l~~~l~~l~ 147 (208)
T 3b85_A 88 DALRDMVEPEVIPKLMEA---G-----------I--VEVAPLAYMRGRTLNDAFVILDEAQNT----TPAQMKMFLTRLG 147 (208)
T ss_dssp HHHTTTSCTTHHHHHHHT---T-----------S--EEEEEGGGGTTCCBCSEEEEECSGGGC----CHHHHHHHHTTBC
T ss_pred HHHHHhccHHHHHHHHHh---C-----------C--chHHHHHHHHHHhcCCCEEEEeCCccc----cHHHHHHHHHHhc
Confidence 000000001112223222 2 1 999999999999999999999999999 7888888887775
Q ss_pred CCCeEEEEeCCcchhhccCEEEEEeCce
Q 047171 501 QGRTMIIIAHRLSTIRKADLIGVLQSGR 528 (1224)
Q Consensus 501 ~~~t~i~i~H~l~~~~~ad~i~vl~~G~ 528 (1224)
+|+|+| |||+++.+.. +...++|.
T Consensus 148 ~g~tii-vtHd~~~~~~---~~~~~~G~ 171 (208)
T 3b85_A 148 FGSKMV-VTGDITQVDL---PGGQKSGL 171 (208)
T ss_dssp TTCEEE-EEEC---------------CC
T ss_pred CCCEEE-EECCHHHHhC---cCCCCCcH
Confidence 588999 9999986653 44455663
No 126
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.89 E-value=8.2e-25 Score=227.97 Aligned_cols=147 Identities=16% Similarity=0.213 Sum_probs=109.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcccEEecCCCCCCcccHHHHHhcCCCCCCHHHHH
Q 047171 345 TIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFSTSIKENILIGKPGASMETVV 424 (1224)
Q Consensus 345 ~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~g~~~~~~~~~~ 424 (1224)
.++|+||||||||||+++|+|++. |.++|.+..+......++++||++|++ +..+|+ ++...
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~-----i~~~g~~~~~~~~~~~~~~ig~~~~~~-----~~~~~~-~~~~~------- 63 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG-----KRAIGFWTEEVRDPETKKRTGFRIITT-----EGKKKI-FSSKF------- 63 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG-----GGEEEEEEEEEC------CCEEEEEET-----TCCEEE-EEETT-------
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-----CcCCCEEhhhhccccccceeEEEeecC-----cHHHHH-HHhhc-------
Confidence 589999999999999999999985 567776654433224567899999987 223333 11100
Q ss_pred HHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHH-----hccCCCEEEEeC--CCCCCCHHHHHHHHHHHH
Q 047171 425 KAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARA-----LIRDPKILLLDE--ATSALDAESERIVQEALD 497 (1224)
Q Consensus 425 ~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARa-----l~~~~~ililDE--~ts~lD~~~~~~i~~~l~ 497 (1224)
.+ .+..+++++.+||||||||++|||| ++.+|+++|||| ||++||+...+.+.+.++
T Consensus 64 --------------~~--~~~~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~ 127 (178)
T 1ye8_A 64 --------------FT--SKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMH 127 (178)
T ss_dssp --------------CC--CSSEETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHT
T ss_pred --------------CC--ccccccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHh
Confidence 00 0135677888999999999999996 999999999999 999999999999998886
Q ss_pred HHcCCCeEEEEeC---Ccchhhc-cCEEEEEeCceEEe
Q 047171 498 QASQGRTMIIIAH---RLSTIRK-ADLIGVLQSGRVIE 531 (1224)
Q Consensus 498 ~~~~~~t~i~i~H---~l~~~~~-ad~i~vl~~G~i~~ 531 (1224)
+ .+.|+|+++| +.+.+.. ||+ .+|++++
T Consensus 128 ~--~~~~~i~~~H~~h~~~~~~~i~~r----~~~~i~~ 159 (178)
T 1ye8_A 128 D--PNVNVVATIPIRDVHPLVKEIRRL----PGAVLIE 159 (178)
T ss_dssp C--TTSEEEEECCSSCCSHHHHHHHTC----TTCEEEE
T ss_pred c--CCCeEEEEEccCCCchHHHHHHhc----CCcEEEE
Confidence 5 4677999996 6677765 776 5566665
No 127
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.89 E-value=2e-25 Score=255.80 Aligned_cols=141 Identities=16% Similarity=0.198 Sum_probs=117.7
Q ss_pred EEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcceEEE
Q 047171 980 LKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIALV 1059 (1224)
Q Consensus 980 ~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~~V 1059 (1224)
|++++| | .++++++||++++|+.++|+||||||||||+++|.|+++|++|.|.++|.+ .+....+|+.++++
T Consensus 151 ~~~v~f-y-----~~~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~--e~~~~~~~~~i~~~ 222 (330)
T 2pt7_A 151 YNLLDN-K-----EQAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTE--EIVFKHHKNYTQLF 222 (330)
T ss_dssp TTTSTT-H-----HHHHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSC--CCCCSSCSSEEEEE
T ss_pred cCchhh-H-----HHHHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCee--ccccccchhEEEEE
Confidence 555555 5 238999999999999999999999999999999999999999999999975 33333355666665
Q ss_pred ecCCCCCcccHHHHHccCCCCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHccCCCEEE
Q 047171 1060 SQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILL 1139 (1224)
Q Consensus 1060 ~Qdp~LF~gTIreNl~~~~~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll~~p~ILl 1139 (1224)
+| |||+||++|||||.++|++||
T Consensus 223 ~g---------------------------------------------------------gg~~~r~~la~aL~~~p~ili 245 (330)
T 2pt7_A 223 FG---------------------------------------------------------GNITSADCLKSCLRMRPDRII 245 (330)
T ss_dssp CB---------------------------------------------------------TTBCHHHHHHHHTTSCCSEEE
T ss_pred eC---------------------------------------------------------CChhHHHHHHHHhhhCCCEEE
Confidence 41 899999999999999999999
Q ss_pred EeccCCCCCHHHHHHHHHHHHHhcCCC-eEEEEccCchhhhhcCEEEEEeCCEE
Q 047171 1140 LDEATSALDSASENLVQEALEKMMVGR-TCVVVAHRLSTIQKADNIVVIKNGKV 1192 (1224)
Q Consensus 1140 LDEaTSaLD~~te~~I~~~l~~~~~~~-TvI~IaHrl~ti~~aD~I~vl~~G~I 1192 (1224)
|||||+. .+++.|+++..|+ |+|+++|+++....||||++|++|+.
T Consensus 246 ldE~~~~-------e~~~~l~~~~~g~~tvi~t~H~~~~~~~~dri~~l~~g~~ 292 (330)
T 2pt7_A 246 LGELRSS-------EAYDFYNVLCSGHKGTLTTLHAGSSEEAFIRLANMSSSNS 292 (330)
T ss_dssp ECCCCST-------HHHHHHHHHHTTCCCEEEEEECSSHHHHHHHHHHHHHTSG
T ss_pred EcCCChH-------HHHHHHHHHhcCCCEEEEEEcccHHHHHhhhheehhcCCc
Confidence 9999982 2456666666665 79999999998888999999998853
No 128
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.87 E-value=6.7e-22 Score=230.09 Aligned_cols=84 Identities=23% Similarity=0.323 Sum_probs=76.9
Q ss_pred cCCCCCCChHHHHHHHHHHHhc------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEeCCcchhhccCE
Q 047171 448 GQFGVQLSGGQKQRIAIARALI------RDPKILLLDEATSALDAESERIVQEALDQAS-QGRTMIIIAHRLSTIRKADL 520 (1224)
Q Consensus 448 ~~~g~~LSgGq~qriaiARal~------~~~~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~i~H~l~~~~~ad~ 520 (1224)
+....+||||||||++|||||+ .+|++|||||||++||+.+...+.+.|+++. .|+|+|+|||+++....||+
T Consensus 274 ~~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~~~~~d~ 353 (365)
T 3qf7_A 274 ERPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREFSEAFDR 353 (365)
T ss_dssp EEEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHHHTTCSC
T ss_pred CCCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCE
Confidence 4567789999999999999999 7999999999999999999999999998764 58999999999999878999
Q ss_pred EEEEeCceEEe
Q 047171 521 IGVLQSGRVIE 531 (1224)
Q Consensus 521 i~vl~~G~i~~ 531 (1224)
|++|++|++++
T Consensus 354 ~~~l~~G~i~~ 364 (365)
T 3qf7_A 354 KLRITGGVVVN 364 (365)
T ss_dssp EEEEETTEEC-
T ss_pred EEEEECCEEEe
Confidence 99999999975
No 129
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.86 E-value=1.8e-24 Score=252.58 Aligned_cols=168 Identities=17% Similarity=0.208 Sum_probs=133.6
Q ss_pred ccceeceeEEEeCCc--------------------EEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHH
Q 047171 993 QMIFKGLTLKIEAGK--------------------TVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKL 1052 (1224)
Q Consensus 993 ~~vL~~isl~I~~Ge--------------------~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~l 1052 (1224)
..+|+||||+|++|+ .+||+||||||||||+++|.|+++|++|+|.++|.++.
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t------- 108 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVT------- 108 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC-----------
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecc-------
Confidence 358999999999999 99999999999999999999999999999999998763
Q ss_pred hcceEEEecCCCCCcccHHHHHccCCCCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChH--HHHHHHHHHH
Q 047171 1053 RSCIALVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGG--QKQRIALARA 1130 (1224)
Q Consensus 1053 R~~i~~V~Qdp~LF~gTIreNl~~~~~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGG--QrQRlaLARA 1130 (1224)
| .++++|++...+.|+.||+.++.+. +.+.+.++..++.+ ++..+ . |||| ||||++||||
T Consensus 109 ~--~~~v~q~~~~~~ltv~D~~g~~~~~---~~~~~~L~~~~L~~--------~~~~~----~-lS~G~~~kqrv~la~a 170 (413)
T 1tq4_A 109 M--ERHPYKHPNIPNVVFWDLPGIGSTN---FPPDTYLEKMKFYE--------YDFFI----I-ISATRFKKNDIDIAKA 170 (413)
T ss_dssp C--CCEEEECSSCTTEEEEECCCGGGSS---CCHHHHHHHTTGGG--------CSEEE----E-EESSCCCHHHHHHHHH
T ss_pred e--eEEeccccccCCeeehHhhcccchH---HHHHHHHHHcCCCc--------cCCeE----E-eCCCCccHHHHHHHHH
Confidence 2 2789999865578999998776432 33555555554322 22222 2 8999 9999999999
Q ss_pred Hcc----------CCCEEEEeccCCCCCHHHHHHHHHHHHHhc------C----CCeEEEEccCchh--hhh-cCEEE
Q 047171 1131 VLK----------NPMILLLDEATSALDSASENLVQEALEKMM------V----GRTCVVVAHRLST--IQK-ADNIV 1185 (1224)
Q Consensus 1131 ll~----------~p~ILlLDEaTSaLD~~te~~I~~~l~~~~------~----~~TvI~IaHrl~t--i~~-aD~I~ 1185 (1224)
+.+ +|++++|||||++||+.+++.+.+.|++.. . ..++++-||.++. +.. ||+|.
T Consensus 171 L~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~ 248 (413)
T 1tq4_A 171 ISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLI 248 (413)
T ss_dssp HHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHH
T ss_pred HHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHH
Confidence 999 999999999999999999999998888763 1 2456677899886 666 88875
No 130
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.86 E-value=3e-24 Score=254.20 Aligned_cols=195 Identities=15% Similarity=0.134 Sum_probs=156.9
Q ss_pred ccEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCc---cCCCCC----
Q 047171 976 GFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDER---NIKSYN---- 1048 (1224)
Q Consensus 976 g~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~---di~~~~---- 1048 (1224)
+.++++|+++.|+. +.++|+++ |+|.+||+++|+||||||||||+++|.|+++|+.|.|.++|. +++++.
T Consensus 130 ~~l~~~~v~~~~~t--g~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~ 206 (438)
T 2dpy_A 130 NPLQRTPIEHVLDT--GVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENIL 206 (438)
T ss_dssp CTTTSCCCCSBCCC--SCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTT
T ss_pred CceEEeccceecCC--CceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhc
Confidence 46889999999963 34699999 999999999999999999999999999999999999999998 564432
Q ss_pred -HHHHhcceEEEecC-C-CCCcccHHHHHccCCCCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHH
Q 047171 1049 -LRKLRSCIALVSQE-P-TLFAGTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRI 1125 (1224)
Q Consensus 1049 -~~~lR~~i~~V~Qd-p-~LF~gTIreNl~~~~~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRl 1125 (1224)
...+++.++||+|+ . .....|+.+|+.+.. +.... + + ......+ +...+||+|| ||+
T Consensus 207 ~~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~a------e~~~~-~--~---------~~v~~~l-d~l~~lS~g~-qrv 266 (438)
T 2dpy_A 207 GPDGRARSVVIAAPADVSPLLRMQGAAYATRIA------EDFRD-R--G---------QHVLLIM-DSLTRYAMAQ-REI 266 (438)
T ss_dssp HHHHHHTEEEEEECTTSCHHHHHHHHHHHHHHH------HHHHT-T--T---------CEEEEEE-ECHHHHHHHH-HHH
T ss_pred cccccCceEEEEECCCCCHHHHHHHHHHHHHHH------HHHHh-C--C---------CCHHHHH-HhHHHHHHHH-HHH
Confidence 45688999999995 3 344568899887531 11110 0 0 0000111 2356799999 999
Q ss_pred HHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC-----CC-----eEEEEccCchhhhhcCEEEEEeCCEEEEe
Q 047171 1126 ALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMV-----GR-----TCVVVAHRLSTIQKADNIVVIKNGKVVEQ 1195 (1224)
Q Consensus 1126 aLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~-----~~-----TvI~IaHrl~ti~~aD~I~vl~~G~Ive~ 1195 (1224)
+|| +++|++ |++||+.+...+.+.++++.+ |+ ||+++||+++ ...||++++|.+|+|+..
T Consensus 267 slA---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~-~~iad~v~~l~dG~Ivl~ 336 (438)
T 2dpy_A 267 ALA---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ-DPIADSARAILDGHIVLS 336 (438)
T ss_dssp HHH---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC-CHHHHHHHHHSSEEEEEC
T ss_pred HHH---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc-chhhceEEEEeCcEEEEe
Confidence 999 899998 999999999999999988755 43 9999999999 667999999999999999
Q ss_pred cChhHHhh
Q 047171 1196 GTQSSLLS 1203 (1224)
Q Consensus 1196 Gt~~eLl~ 1203 (1224)
|++.++..
T Consensus 337 ~~~~~~~~ 344 (438)
T 2dpy_A 337 RRLAEAGH 344 (438)
T ss_dssp HHHHHTTC
T ss_pred CCHHHccC
Confidence 99988754
No 131
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.85 E-value=6.4e-23 Score=213.01 Aligned_cols=149 Identities=16% Similarity=0.216 Sum_probs=104.6
Q ss_pred eEEEECCCCCCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcccEEecCCCC--CCcccHHH
Q 047171 332 DVDFSYPTRPDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPI--LFSTSIKE 409 (1224)
Q Consensus 332 ~v~f~y~~~~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~--lf~~ti~~ 409 (1224)
||||+.+ ++++++|+||||||||||++++.+ |...+ +.+.+| |+++|++. .+.+++.+
T Consensus 1 ~vsl~i~---~gei~~l~G~nGsGKSTl~~~~~~------~~~~~--------~~d~~~---g~~~~~~~~~~~~~~~~~ 60 (171)
T 4gp7_A 1 SMKLTIP---ELSLVVLIGSSGSGKSTFAKKHFK------PTEVI--------SSDFCR---GLMSDDENDQTVTGAAFD 60 (171)
T ss_dssp CEEEEEE---SSEEEEEECCTTSCHHHHHHHHSC------GGGEE--------EHHHHH---HHHCSSTTCGGGHHHHHH
T ss_pred CccccCC---CCEEEEEECCCCCCHHHHHHHHcc------CCeEE--------ccHHHH---HHhcCcccchhhHHHHHH
Confidence 4666653 567999999999999999999653 21112 223333 67888763 23333333
Q ss_pred HHhcCCCCCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHH
Q 047171 410 NILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESE 489 (1224)
Q Consensus 410 ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~ililDE~ts~lD~~~~ 489 (1224)
++. ..+ ...+..|+.+.+... ...|||||||++||||+..+|++|+|||||++||+.++
T Consensus 61 ~~~------------~~~--------~~~~~~g~~~~~~~~-~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~ 119 (171)
T 4gp7_A 61 VLH------------YIV--------SKRLQLGKLTVVDAT-NVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNK 119 (171)
T ss_dssp HHH------------HHH--------HHHHHTTCCEEEESC-CCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHH
T ss_pred HHH------------HHH--------HHHHhCCCeEEEECC-CCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHh
Confidence 321 111 112234666555543 45699999999999999999999999999999999944
Q ss_pred ----------------HHHHHHHHHH-cCCCeEEEEeCCcchhhccCEE
Q 047171 490 ----------------RIVQEALDQA-SQGRTMIIIAHRLSTIRKADLI 521 (1224)
Q Consensus 490 ----------------~~i~~~l~~~-~~~~t~i~i~H~l~~~~~ad~i 521 (1224)
+.+.+.++++ .+|.|+|+|||+++.+..++++
T Consensus 120 ~R~~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~~~~~~~~~ 168 (171)
T 4gp7_A 120 NRTDRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPEEVEEVVFE 168 (171)
T ss_dssp TCSSCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHHHHHHEEEE
T ss_pred cccCCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHHHhhhhhhc
Confidence 6777776554 3589999999999999887664
No 132
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.84 E-value=1.7e-24 Score=234.06 Aligned_cols=167 Identities=14% Similarity=0.128 Sum_probs=118.9
Q ss_pred cEEEEeEEEECCCCCCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCH-HHHhcccEEecCCCCCCcc
Q 047171 327 EIEFKDVDFSYPTRPDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQL-KWLRSQMGLVNQEPILFST 405 (1224)
Q Consensus 327 ~i~~~~v~f~y~~~~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~-~~~r~~i~~v~Q~~~lf~~ 405 (1224)
.-.++||+|..+ ++++++|+||||||||||+++|+|++ | |+|.+ |.++...+. ...++.++|++|++.+|..
T Consensus 10 ~~~l~~isl~i~---~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 82 (218)
T 1z6g_A 10 HSSGLVPRGSMN---NIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFED 82 (218)
T ss_dssp ---------------CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHH
T ss_pred cccccCCceecC---CCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEE-eecccCCCCCcccccCCeEEECCHHHHHH
Confidence 346789999874 46799999999999999999999999 6 99999 887754432 2356789999999876643
Q ss_pred -----------cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHH-----HHHhc
Q 047171 406 -----------SIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAI-----ARALI 469 (1224)
Q Consensus 406 -----------ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriai-----ARal~ 469 (1224)
++.+| .+|.+ .+++.++++. +....++ .+||||||||++| ||+++
T Consensus 83 ~~~~~~~l~~~~~~~~-~~g~~---~~~i~~~l~~------------~~~~il~---~~lsggq~qR~~i~~~~~~~~ll 143 (218)
T 1z6g_A 83 KLKNEDFLEYDNYANN-FYGTL---KSEYDKAKEQ------------NKICLFE---MNINGVKQLKKSTHIKNALYIFI 143 (218)
T ss_dssp HHHTTCEEEEEEETTE-EEEEE---HHHHHHHHHT------------TCEEEEE---ECHHHHHHHTTCSSCCSCEEEEE
T ss_pred hhhccchhhhhhcccc-cCCCc---HHHHHHHHhC------------CCcEEEE---ecHHHHHHHHHHhcCCCcEEEEE
Confidence 33334 33322 2333333321 1222232 6799999999999 99999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCCcchhhccCEEEEEeC
Q 047171 470 RDPKILLLDEATSALDAESERIVQEALDQASQGRTMIIIAHRLSTIRKADLIGVLQS 526 (1224)
Q Consensus 470 ~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~i~H~l~~~~~ad~i~vl~~ 526 (1224)
.+|++++|||||+++|.+++..+++.+....+++| ++| +..+|.|+|+++
T Consensus 144 ~~~~~~~Lde~~~~~d~~~~~~i~~~l~~~~~~~~---~~h----~~~~d~iiv~~~ 193 (218)
T 1z6g_A 144 KPPSTDVLLSRLLTRNTENQEQIQKRMEQLNIELH---EAN----LLNFNLSIINDD 193 (218)
T ss_dssp ECSCHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHH---HHT----TSCCSEEEECSS
T ss_pred eCcCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH---hhc----ccCCCEEEECCC
Confidence 99999999999999999999999999988777777 788 577999988765
No 133
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.83 E-value=2.5e-20 Score=214.32 Aligned_cols=81 Identities=20% Similarity=0.224 Sum_probs=76.0
Q ss_pred CCChHHHHHHHHHHHHc---------cCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEE
Q 047171 1116 QLSGGQKQRIALARAVL---------KNPMILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLSTIQKADNIVV 1186 (1224)
Q Consensus 1116 ~LSGGQrQRlaLARAll---------~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~aD~I~v 1186 (1224)
.||||||||++|||+|+ .+|+|||||||||+||+...+.+.+.+.+.. .|+|++|| ++. .||++++
T Consensus 265 ~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~--qt~i~~th-~~~--~~~~i~~ 339 (359)
T 2o5v_A 265 YASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP--QAIVTGTE-LAP--GAALTLR 339 (359)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS--EEEEEESS-CCT--TCSEEEE
T ss_pred hCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC--cEEEEEEe-ccc--cCCEEEE
Confidence 69999999999999999 8999999999999999999999999998763 79999999 454 8999999
Q ss_pred EeCCEEEEecChhHH
Q 047171 1187 IKNGKVVEQGTQSSL 1201 (1224)
Q Consensus 1187 l~~G~Ive~Gt~~eL 1201 (1224)
|++|+|++.|+++++
T Consensus 340 l~~G~i~~~g~~~~~ 354 (359)
T 2o5v_A 340 AQAGRFTPVADEEMQ 354 (359)
T ss_dssp EETTEEEECCCTTTS
T ss_pred EECCEEEecCCHHHH
Confidence 999999999999987
No 134
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.82 E-value=3e-22 Score=226.02 Aligned_cols=176 Identities=19% Similarity=0.258 Sum_probs=126.8
Q ss_pred eeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCC----HHHH--hcceEEEecCCC-CCc-
Q 047171 996 FKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYN----LRKL--RSCIALVSQEPT-LFA- 1067 (1224)
Q Consensus 996 L~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~----~~~l--R~~i~~V~Qdp~-LF~- 1067 (1224)
++++||++++|+.++|||||||||||+++.|+|++.|++|+|.++|.|+.... +..+ |.++++++|++. ++.
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~ 169 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAA 169 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHH
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHH
Confidence 35688999999999999999999999999999999999999999999987653 2344 457999999997 664
Q ss_pred ccHHHHHccCCCCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHccCCC--EEEEeccCC
Q 047171 1068 GTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPM--ILLLDEATS 1145 (1224)
Q Consensus 1068 gTIreNl~~~~~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll~~p~--ILlLDEaTS 1145 (1224)
.|++||+.++.....+.. .++.+++. +-.+..+ ..|| |||++||||+..+|+ +|+|| ||+
T Consensus 170 ~~v~e~l~~~~~~~~d~~---lldt~gl~-------~~~~~~~----~eLS---kqr~~iaral~~~P~e~lLvLD-pts 231 (302)
T 3b9q_A 170 TVLSKAVKRGKEEGYDVV---LCDTSGRL-------HTNYSLM----EELI---ACKKAVGKIVSGAPNEILLVLD-GNT 231 (302)
T ss_dssp HHHHHHHHHHHHTTCSEE---EECCCCCS-------SCCHHHH----HHHH---HHHHHHHTTSTTCCSEEEEEEE-GGG
T ss_pred HHHHHHHHHHHHcCCcch---HHhcCCCC-------cchhHHH----HHHH---HHHHHHHHhhccCCCeeEEEEe-CCC
Confidence 689999976421100000 00111110 0011112 2488 999999999999999 99999 999
Q ss_pred CCCHHHHHHHHHHHHHhcCCCeEEEEcc---------Cchhhhh-cCEEEEEeCCEEE
Q 047171 1146 ALDSASENLVQEALEKMMVGRTCVVVAH---------RLSTIQK-ADNIVVIKNGKVV 1193 (1224)
Q Consensus 1146 aLD~~te~~I~~~l~~~~~~~TvI~IaH---------rl~ti~~-aD~I~vl~~G~Iv 1193 (1224)
++|+.+.. +.+.+ ..+.|+|++|| .++.+.. .+.|.++..|+.+
T Consensus 232 glD~~~~~---~~~~~-~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~~ 285 (302)
T 3b9q_A 232 GLNMLPQA---REFNE-VVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEAV 285 (302)
T ss_dssp GGGGHHHH---HHHHH-HTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSSG
T ss_pred CcCHHHHH---HHHHH-hcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCCh
Confidence 99998653 22322 23789999999 3444433 6899999999653
No 135
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.82 E-value=5.3e-22 Score=220.71 Aligned_cols=147 Identities=20% Similarity=0.179 Sum_probs=95.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcccEEecCCCCCCcc-cHHHHHhcCCCCCC---H
Q 047171 345 TIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFST-SIKENILIGKPGAS---M 420 (1224)
Q Consensus 345 ~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~-ti~~ni~~g~~~~~---~ 420 (1224)
.+|||||||||||||+++|+|+..|++|+|.++|.++.. ...++.+++++|++.++.. ||.||+.||..... .
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~---~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~ 80 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPK---TVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCW 80 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCC---CCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCc---ceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHH
Confidence 689999999999999999999999999999999988743 2345789999999988765 99999999864221 1
Q ss_pred HHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc
Q 047171 421 ETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQAS 500 (1224)
Q Consensus 421 ~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~ 500 (1224)
+.+.+... .++...++ .+||||||||+++|||++. +++||||+++||+...+ .++.+.
T Consensus 81 ~~i~~~~~----~~~~~~~~-----------~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD~~----~l~~L~ 138 (270)
T 3sop_A 81 EPIEKYIN----EQYEKFLK-----------EEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLDLE----FMKHLS 138 (270)
T ss_dssp HHHHHHHH----HHHHHHHH-----------HHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHHHH----HHHHHH
T ss_pred HHHHHHHH----HHHHhhhH-----------HhcCcccchhhhhheeeee---eEEEecCCCcCCHHHHH----HHHHHH
Confidence 22332222 22322222 3699999999999999886 99999999999998733 233333
Q ss_pred CCCeEEEEeCCcchhh
Q 047171 501 QGRTMIIIAHRLSTIR 516 (1224)
Q Consensus 501 ~~~t~i~i~H~l~~~~ 516 (1224)
+..++|+|.|+.+.+.
T Consensus 139 ~~~~vI~Vi~K~D~lt 154 (270)
T 3sop_A 139 KVVNIIPVIAKADTMT 154 (270)
T ss_dssp TTSEEEEEETTGGGSC
T ss_pred hcCcEEEEEeccccCC
Confidence 3489999999887763
No 136
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.82 E-value=6.4e-22 Score=220.04 Aligned_cols=150 Identities=17% Similarity=0.153 Sum_probs=96.1
Q ss_pred EEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcceEEEecCCCCCc-ccHHHHHccCCCCCCHHHH
Q 047171 1008 TVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIALVSQEPTLFA-GTIRQNIVYGKEVATEAEI 1086 (1224)
Q Consensus 1008 ~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qdp~LF~-gTIreNl~~~~~~~~deei 1086 (1224)
++|||||||||||||+++|+|+..|++|+|.++|.++.. ...++.+++++|++.++. .||.||+.++..... ++.
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~---~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~-~~~ 79 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPK---TVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINN-ENC 79 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCC---CCSCCEEEESCC----CCEEEEECCCC--CCSBC-TTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCc---ceeeeeeEEEeecCCCcCCceEEechhhhhhccc-HHH
Confidence 489999999999999999999999999999999988743 345688999999998875 599999998854222 122
Q ss_pred HHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCC
Q 047171 1087 RKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMVGR 1166 (1224)
Q Consensus 1087 ~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~ 1166 (1224)
++.+......++-..++ ..||||||||+++|||+.. +++|||||++||+... .+.+.+. +.+
T Consensus 80 ~~~i~~~~~~~~~~~~~-----------~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD~-~~l~~L~---~~~ 141 (270)
T 3sop_A 80 WEPIEKYINEQYEKFLK-----------EEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLDL-EFMKHLS---KVV 141 (270)
T ss_dssp SHHHHHHHHHHHHHHHH-----------HHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHHH-HHHHHHH---TTS
T ss_pred HHHHHHHHHHHHHhhhH-----------HhcCcccchhhhhheeeee---eEEEecCCCcCCHHHH-HHHHHHH---hcC
Confidence 22222222223322222 1499999999999999885 9999999999998763 3334443 338
Q ss_pred eEEEEccCchhhh
Q 047171 1167 TCVVVAHRLSTIQ 1179 (1224)
Q Consensus 1167 TvI~IaHrl~ti~ 1179 (1224)
++|+|.|+.+++.
T Consensus 142 ~vI~Vi~K~D~lt 154 (270)
T 3sop_A 142 NIIPVIAKADTMT 154 (270)
T ss_dssp EEEEEETTGGGSC
T ss_pred cEEEEEeccccCC
Confidence 9999999987663
No 137
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.81 E-value=1.1e-22 Score=230.62 Aligned_cols=179 Identities=17% Similarity=0.182 Sum_probs=131.2
Q ss_pred cccEEEEEEEEECCCCCCccceeceeEE-----------------------EeCCcEEEEEcCCCCChHHHHHHHhcccC
Q 047171 975 KGFIELKNVFFSYPSRPDQMIFKGLTLK-----------------------IEAGKTVALVGQSGSGKSTIIGLIERFYD 1031 (1224)
Q Consensus 975 ~g~I~~~~vsf~Y~~~~~~~vL~~isl~-----------------------I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~ 1031 (1224)
.+.|+++||++.|. |+++++++. +++|+.+||+||||||||||+++|.|+++
T Consensus 41 ~~~i~~~~v~~~y~-----p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 41 GEQIDLLEVEEVYL-----PLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp TCCCCHHHHHHTHH-----HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCeEEeeehhhhhh-----hHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHhhcc
Confidence 45799999999993 477887775 89999999999999999999999999999
Q ss_pred CCCceEEECCccCCCCCHHHHhcceEEEecCCCCCcccHHHHHccCCC-CCCHHHHHHHHHHHhHHHHHHhcccccc-cc
Q 047171 1032 PQSGSVMVDERNIKSYNLRKLRSCIALVSQEPTLFAGTIRQNIVYGKE-VATEAEIRKAAVLANAHEFISSTEDGYD-TY 1109 (1224)
Q Consensus 1032 p~~G~I~idG~di~~~~~~~lR~~i~~V~Qdp~LF~gTIreNl~~~~~-~~~deei~~al~~a~l~~~I~~lp~gld-t~ 1109 (1224)
|..|. +++++|+||++++..|++||+.+... ...+.. ....+.+++..+..|.. ..
T Consensus 116 ~~~G~-----------------~~v~~v~qd~~~~~~t~~e~~~~~~~~g~~~~~-----d~~~~~~~L~~l~~~~~~~~ 173 (312)
T 3aez_A 116 RWDHH-----------------PRVDLVTTDGFLYPNAELQRRNLMHRKGFPESY-----NRRALMRFVTSVKSGSDYAC 173 (312)
T ss_dssp TSTTC-----------------CCEEEEEGGGGBCCHHHHHHTTCTTCTTSGGGB-----CHHHHHHHHHHHHTTCSCEE
T ss_pred ccCCC-----------------CeEEEEecCccCCcccHHHHHHHHHhcCCChHH-----HHHHHHHHHHHhCCCcccCC
Confidence 97663 46999999999998899999975321 111100 01122334444443433 33
Q ss_pred cCCCCCCCChHHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhh--hcCEEEEE
Q 047171 1110 CGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLSTIQ--KADNIVVI 1187 (1224)
Q Consensus 1110 vge~G~~LSGGQrQRlaLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~--~aD~I~vl 1187 (1224)
+ ..|||||+||+++|||++.+|+|||||||++.+|+.. ..+.+.+ + .+|+|+|..+... ..+|.+.+
T Consensus 174 ~----~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~-----~~l~~~~-D-~~I~V~a~~~~~~~R~i~R~~~~ 242 (312)
T 3aez_A 174 A----PVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPT-----LMVSDLF-D-FSLYVDARIEDIEQWYVSRFLAM 242 (312)
T ss_dssp E----EEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSS-----CCGGGGC-S-EEEEEEECHHHHHHHHHHHHHHH
T ss_pred c----ccCChhhhhhhhhHHHhccCCCEEEECCccccCCcch-----HHHHHhc-C-cEEEEECCHHHHHHHHHHHHHHH
Confidence 3 4699999999999999999999999999999998632 1233333 3 5688888777642 26666655
Q ss_pred eCCE
Q 047171 1188 KNGK 1191 (1224)
Q Consensus 1188 ~~G~ 1191 (1224)
.+|+
T Consensus 243 rd~~ 246 (312)
T 3aez_A 243 RTTA 246 (312)
T ss_dssp TTTG
T ss_pred Hhcc
Confidence 5543
No 138
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.81 E-value=3.7e-23 Score=228.83 Aligned_cols=175 Identities=18% Similarity=0.161 Sum_probs=146.0
Q ss_pred cceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCC-CceEEECCccCCCCCHHHHhcceEEEec-----CCCCCc
Q 047171 994 MIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQ-SGSVMVDERNIKSYNLRKLRSCIALVSQ-----EPTLFA 1067 (1224)
Q Consensus 994 ~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~-~G~I~idG~di~~~~~~~lR~~i~~V~Q-----dp~LF~ 1067 (1224)
++|+|+| +++|+.++|+|||||||||++++|+|+++|+ +|+|.++|.++..+. +..+++++| ++..|.
T Consensus 15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~----~~~~~~v~q~~~gl~~~~l~ 88 (261)
T 2eyu_A 15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVF----KHKKSIVNQREVGEDTKSFA 88 (261)
T ss_dssp THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCC----CCSSSEEEEEEBTTTBSCHH
T ss_pred HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeec----CCcceeeeHHHhCCCHHHHH
Confidence 4899999 9999999999999999999999999999998 999999999886543 455788999 666778
Q ss_pred ccHHHHHccCCCCC-------CHHHHHHHHHHHhH-----------------HHHH------------HhcccccccccC
Q 047171 1068 GTIRQNIVYGKEVA-------TEAEIRKAAVLANA-----------------HEFI------------SSTEDGYDTYCG 1111 (1224)
Q Consensus 1068 gTIreNl~~~~~~~-------~deei~~al~~a~l-----------------~~~I------------~~lp~gldt~vg 1111 (1224)
.+++.+|... |+. +.+.++.+++.+.. +..+ ..+++++++.|+
T Consensus 89 ~~la~aL~~~-p~illlDEp~D~~~~~~~l~~~~~g~~vl~t~H~~~~~~~~dri~~l~~~~~~~~~~~~l~~~l~~vi~ 167 (261)
T 2eyu_A 89 DALRAALRED-PDVIFVGEMRDLETVETALRAAETGHLVFGTLHTNTAIDTIHRIVDIFPLNQQEQVRIVLSFILQGIIS 167 (261)
T ss_dssp HHHHHHHHHC-CSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSHHHHHHHHHHTSCGGGHHHHHHHHHHHEEEEEE
T ss_pred HHHHHHHhhC-CCEEEeCCCCCHHHHHHHHHHHccCCEEEEEeCcchHHHHHHHHhhhcCccccchHHHHHHHHhhEEEE
Confidence 8999998763 443 66666666654421 1111 235678999999
Q ss_pred CCCCCCChHHHHHHHHHHHHccCCCE--EEEeccCCCCCHHH---------HHHHHHHHHHhcCCCeEEEEccCchh
Q 047171 1112 ERGVQLSGGQKQRIALARAVLKNPMI--LLLDEATSALDSAS---------ENLVQEALEKMMVGRTCVVVAHRLST 1177 (1224)
Q Consensus 1112 e~G~~LSGGQrQRlaLARAll~~p~I--LlLDEaTSaLD~~t---------e~~I~~~l~~~~~~~TvI~IaHrl~t 1177 (1224)
+++..+|+| ||+++||+++.+|+| +|+||+||++|... +..++++++...+|+|.+.++||++.
T Consensus 168 qrl~~~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~t~~~~a~r~~~ 242 (261)
T 2eyu_A 168 QRLLPKIGG--GRVLAYGLLIPNTAIRNLIRENKLQQVYSLMQSGQAETGMQTMNQTLYKLYKQGLITLEDAMEASP 242 (261)
T ss_dssp EEEECCSSS--SSEEEEEEECCCHHHHHHHHHTCHHHHHHHHHHSCSCTTEECHHHHHHHHHHTTSSCHHHHHHHCS
T ss_pred EEeEecCCC--CEEEEEEEecCCHHHHHHHHcCCHHHHHHHHHHhHHhcCCccHHHHHHHHHHcCCCCHHHHHHHhC
Confidence 999999999 899999999999999 99999999999873 45789999988999999999999873
No 139
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.81 E-value=9.5e-23 Score=210.09 Aligned_cols=111 Identities=19% Similarity=0.167 Sum_probs=89.1
Q ss_pred cEEEEEcCCCCChHHHHHHHhcccCCC---CceEEECCccCCCCC---HHHHh-cceE----EEecCCCCCcccHHHHHc
Q 047171 1007 KTVALVGQSGSGKSTIIGLIERFYDPQ---SGSVMVDERNIKSYN---LRKLR-SCIA----LVSQEPTLFAGTIRQNIV 1075 (1224)
Q Consensus 1007 e~vaIVG~SGsGKSTL~~lL~rl~~p~---~G~I~idG~di~~~~---~~~lR-~~i~----~V~Qdp~LF~gTIreNl~ 1075 (1224)
++++|||+||||||||+++|.|+|+|+ .|.|.+||.++.+++ .+.+| ++++ +++|++++| +++
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~---i~~--- 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF---IRR--- 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE---EEE---
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE---Eec---
Confidence 689999999999999999999999998 899999999988887 77888 5788 899999988 211
Q ss_pred cCCCCCCHHHHHHHHHHHhHHHHHHh-cccccccccCCCCCCCChHHHHHHHHHHHHccCCCEE
Q 047171 1076 YGKEVATEAEIRKAAVLANAHEFISS-TEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMIL 1138 (1224)
Q Consensus 1076 ~~~~~~~deei~~al~~a~l~~~I~~-lp~gldt~vge~G~~LSGGQrQRlaLARAll~~p~IL 1138 (1224)
+ + +++ .+++++++.. +| ||||.++|+ |||||||||+||||++++|+|.
T Consensus 77 -~----~-~~~-----~a~l~~~i~~~l~-g~dt~i~Eg---lSgGq~qri~lARall~~p~i~ 125 (171)
T 2f1r_A 77 -V----S-EEE-----GNDLDWIYERYLS-DYDLVITEG---FSKAGKDRIVVVKKPEEVEHFR 125 (171)
T ss_dssp -C----C-HHH-----HTCHHHHHHHHTT-TCSEEEEES---CGGGCCCEEEECSSGGGGGGGC
T ss_pred -C----C-hhh-----hhCHHHHHHhhCC-CCCEEEECC---cCCCCCcEEEEEecccCCCccC
Confidence 1 1 222 6799999999 99 999999995 9999999999999999999874
No 140
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.80 E-value=1.1e-22 Score=236.75 Aligned_cols=175 Identities=19% Similarity=0.195 Sum_probs=147.6
Q ss_pred cceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCC-CceEEECCccCCCCCHHHHhcceEEEec-----CCCCCc
Q 047171 994 MIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQ-SGSVMVDERNIKSYNLRKLRSCIALVSQ-----EPTLFA 1067 (1224)
Q Consensus 994 ~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~-~G~I~idG~di~~~~~~~lR~~i~~V~Q-----dp~LF~ 1067 (1224)
++|++++ +++|+.++|+|||||||||++++|+|+++|+ +|+|.++|.++. + .+|+.+++|+| ++..|+
T Consensus 126 ~~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e-~---~~~~~~~~v~Q~~~g~~~~~~~ 199 (372)
T 2ewv_A 126 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIE-Y---VFKHKKSIVNQREVGEDTKSFA 199 (372)
T ss_dssp SSHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCC-S---CCCCSSSEEEEEEBTTTBSCSH
T ss_pred HHHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHh-h---hhccCceEEEeeecCCCHHHHH
Confidence 3677776 8999999999999999999999999999998 899988776664 2 36788999999 899999
Q ss_pred ccHHHHHccCCCCC-------CHHHHHHHHHHHhH-----------------HHHH------------HhcccccccccC
Q 047171 1068 GTIRQNIVYGKEVA-------TEAEIRKAAVLANA-----------------HEFI------------SSTEDGYDTYCG 1111 (1224)
Q Consensus 1068 gTIreNl~~~~~~~-------~deei~~al~~a~l-----------------~~~I------------~~lp~gldt~vg 1111 (1224)
++|++||.. +|+. +++.++.+++.++. +..+ ..++.++++.|+
T Consensus 200 ~~l~~~L~~-~pd~illdE~~d~e~~~~~l~~~~~g~~vi~t~H~~~~~~~~~rl~~l~~~~~~~~~~~~l~~~l~~vv~ 278 (372)
T 2ewv_A 200 DALRAALRE-DPDVIFVGEMRDLETVETALRAAETGHLVFGTLHTNTAIDTIHRIVDIFPLNQQEQVRIVLSFILQGIIS 278 (372)
T ss_dssp HHHHHHTTS-CCSEEEESCCCSHHHHHHHHHHHTTTCEEEECCCCCSHHHHHHHHHHTSCTTSHHHHHHHHHHSCCEEEE
T ss_pred HHHHHHhhh-CcCEEEECCCCCHHHHHHHHHHHhcCCEEEEEECcchHHHHHHHHHHhcCcccchhHHHHHHHhhhEEEE
Confidence 999999987 4655 67778777777653 1111 125778999999
Q ss_pred CCCCCCChHHHHHHHHHHHHccCCCE--EEEeccCCCCCHH----H-----HHHHHHHHHHhcCCCeEEEEccCchh
Q 047171 1112 ERGVQLSGGQKQRIALARAVLKNPMI--LLLDEATSALDSA----S-----ENLVQEALEKMMVGRTCVVVAHRLST 1177 (1224)
Q Consensus 1112 e~G~~LSGGQrQRlaLARAll~~p~I--LlLDEaTSaLD~~----t-----e~~I~~~l~~~~~~~TvI~IaHrl~t 1177 (1224)
+++..+|+| ||+++||+++.+|+| +|+||+||++|.. + +..++++++...+|+|.+.++||++.
T Consensus 279 qrl~~~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~t~~~~a~r~~~ 353 (372)
T 2ewv_A 279 QRLLPKIGG--GRVLAYELLIPNTAIRNLIRENKLQQVYSLMQSGQAETGMQTMNQTLYKLYKQGLITLEDAMEASP 353 (372)
T ss_dssp EEEEECSSS--SEEEEEEECCCCSHHHHHHHHTCHHHHHHHCC-------CBCSHHHHHHTTTTSSSCTTTTTSSCS
T ss_pred EEeEecCCC--CEEEEEEEeeCCHHHHHHHHcCCHHHHHHHHHHhHHhcCCccHHHHHHHHHHCCCCCHHHHHHHcC
Confidence 998889999 899999999999999 9999999999965 3 45688899888899999999999984
No 141
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.80 E-value=2e-21 Score=222.98 Aligned_cols=174 Identities=18% Similarity=0.261 Sum_probs=126.9
Q ss_pred eceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCC----HHHH--hcceEEEecCCC-CC-cc
Q 047171 997 KGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYN----LRKL--RSCIALVSQEPT-LF-AG 1068 (1224)
Q Consensus 997 ~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~----~~~l--R~~i~~V~Qdp~-LF-~g 1068 (1224)
+++||++++|+.++|||||||||||+++.|+|++.|++|+|.++|.|+.... +..+ |.++++++|++. ++ ..
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~ 227 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAAT 227 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhh
Confidence 3578889999999999999999999999999999999999999999986642 2333 568999999987 55 46
Q ss_pred cHHHHHccCCCCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHccCCC--EEEEeccCCC
Q 047171 1069 TIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPM--ILLLDEATSA 1146 (1224)
Q Consensus 1069 TIreNl~~~~~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll~~p~--ILlLDEaTSa 1146 (1224)
|+++|+.++.....+.. .+..+++. +-.+..+ ..|| |||++||||+..+|+ +|+|| ||++
T Consensus 228 tv~e~l~~~~~~~~d~~---lldt~Gl~-------~~~~~~~----~eLS---kqr~~iaral~~~P~e~lLvLD-pttg 289 (359)
T 2og2_A 228 VLSKAVKRGKEEGYDVV---LCDTSGRL-------HTNYSLM----EELI---ACKKAVGKIVSGAPNEILLVLD-GNTG 289 (359)
T ss_dssp HHHHHHHHHHHTTCSEE---EEECCCCS-------SCCHHHH----HHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGG
T ss_pred hHHHHHHHHHhCCCHHH---HHHhcCCC-------hhhhhHH----HHHH---HHHHHHHHHHhcCCCceEEEEc-CCCC
Confidence 89999976421100100 00111110 0011111 2488 999999999999999 99999 9999
Q ss_pred CCHHHHHHHHHHHHHhcCCCeEEEEcc---------Cchhhhh-cCEEEEEeCCEE
Q 047171 1147 LDSASENLVQEALEKMMVGRTCVVVAH---------RLSTIQK-ADNIVVIKNGKV 1192 (1224)
Q Consensus 1147 LD~~te~~I~~~l~~~~~~~TvI~IaH---------rl~ti~~-aD~I~vl~~G~I 1192 (1224)
+|+.+.. +.+.+ ..+.|+|++|| .++.+.. .+.|..+..|+.
T Consensus 290 lD~~~~~---~~~~~-~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge~ 341 (359)
T 2og2_A 290 LNMLPQA---REFNE-VVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 341 (359)
T ss_dssp GGGHHHH---HHHHH-HTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred CCHHHHH---HHHHH-hcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCCC
Confidence 9998653 22322 23789999999 3444433 689999999964
No 142
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.80 E-value=6.2e-22 Score=212.48 Aligned_cols=168 Identities=17% Similarity=0.120 Sum_probs=110.0
Q ss_pred ccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcceEEEecCCCCCc-ccHH
Q 047171 993 QMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIALVSQEPTLFA-GTIR 1071 (1224)
Q Consensus 993 ~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qdp~LF~-gTIr 1071 (1224)
.++++| .+|++||++||+||||||||||+++|.|+++ .|.+++.....-+....|+.++|++|++.+|. .|+.
T Consensus 9 ~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~----~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~ 82 (207)
T 1znw_A 9 KPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIP----NLHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQ 82 (207)
T ss_dssp ------------CCCEEEEECSTTSSHHHHHHHHHHHST----TCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHT
T ss_pred CcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCC----ceEEcccccccCCcccccCCCeeEecCHHHHHHHHhc
Confidence 358888 7999999999999999999999999999986 34555422111111234678999999998775 4666
Q ss_pred HHHccCC------C--CCCHHHHHHHH----------HHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHcc
Q 047171 1072 QNIVYGK------E--VATEAEIRKAA----------VLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLK 1133 (1224)
Q Consensus 1072 eNl~~~~------~--~~~deei~~al----------~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll~ 1133 (1224)
+|+.+.. . ..+.+++.+.+ +..++.++....| ..|| ||+.
T Consensus 83 ~~l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----------~~lS-----------~l~~ 140 (207)
T 1znw_A 83 GELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMP-----------EAVT-----------VFLA 140 (207)
T ss_dssp TCEEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCT-----------TSEE-----------EEEE
T ss_pred CCceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcC-----------CcEE-----------EEEE
Confidence 6663210 0 11233333322 2333333332222 2344 8999
Q ss_pred CCCEEEEeccCCCC----CHHHHHHHHHHHHHhc--CCCeEEEEccCchhhhh-cCEEEEEe
Q 047171 1134 NPMILLLDEATSAL----DSASENLVQEALEKMM--VGRTCVVVAHRLSTIQK-ADNIVVIK 1188 (1224)
Q Consensus 1134 ~p~ILlLDEaTSaL----D~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~~-aD~I~vl~ 1188 (1224)
+|++++|||||+++ |+.+.+.+++.++++. .+.|+|+|||+++.+.. ||+|++|.
T Consensus 141 ~p~~~~LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~~~~~~~d~i~~l~ 202 (207)
T 1znw_A 141 PPSWQDLQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLESACAELVSLLVGT 202 (207)
T ss_dssp CSCHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHHHHHHHHHHHHC--
T ss_pred CCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHHHHHHHHHHHHHhc
Confidence 99999999999998 6778889999888774 37899999999999865 99999984
No 143
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.80 E-value=7.7e-21 Score=217.68 Aligned_cols=198 Identities=16% Similarity=0.146 Sum_probs=134.9
Q ss_pred CccHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhccCCCCCCCccccccc-ccccccEE---------
Q 047171 261 GEKGGLVFVAGICTILGGVGIMSALP-NLSFISQATTAATRIFEMIDRVPVINSEDEIGKTL-AYLRGEIE--------- 329 (1224)
Q Consensus 261 ~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~-~~~~~~i~--------- 329 (1224)
.++.+.+.+++.++.....+ .+.. ....+..+..+.+|+.++++.++. .... ..... ....+.++
T Consensus 75 ~lt~~~l~~~~~~~~~~~~~--~l~~~~~~~~~~~~~~~~Ri~~~l~~p~~-~~~~-~~~~ir~~~~~~i~l~~l~~~g~ 150 (330)
T 2pt7_A 75 AFSLSRLMHFARCCASFKKK--TIDNYENPILSSNLANGERVQIVLSPVTV-NDET-ISISIRIPSKTTYPHSFFEEQGF 150 (330)
T ss_dssp GGSHHHHHHHHHHHHHHTTC--CCCSSSCCEEEEECTTSCEEEEECTTTSS-STTC-CEEEEECCCCCCCCHHHHHHTTT
T ss_pred CCCHHHHHHHHHHHHHHhCC--CCCCCCCeeEEEEcCCCcEEEEEEcCCcc-CCCC-ceEEEeCCCCCCCCHHHHHhCCC
Confidence 57888888887766554333 1111 122233334456788887753321 1110 00000 01123455
Q ss_pred EEeEEEECCC--------CCCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcccEEecCCCC
Q 047171 330 FKDVDFSYPT--------RPDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPI 401 (1224)
Q Consensus 330 ~~~v~f~y~~--------~~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~ 401 (1224)
|+||+| |.. -++++.++|+||||||||||+++|+|+++|++|.|.++|.+ ++....+++.+++++
T Consensus 151 ~~~v~f-y~~~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~--e~~~~~~~~~i~~~~---- 223 (330)
T 2pt7_A 151 YNLLDN-KEQAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTE--EIVFKHHKNYTQLFF---- 223 (330)
T ss_dssp TTTSTT-HHHHHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSC--CCCCSSCSSEEEEEC----
T ss_pred cCchhh-HHHHHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCee--ccccccchhEEEEEe----
Confidence 666666 510 02456899999999999999999999999999999999865 222222445555543
Q ss_pred CCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCC
Q 047171 402 LFSTSIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEAT 481 (1224)
Q Consensus 402 lf~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~ililDE~t 481 (1224)
| |||+||++|||||..+|+++||||||
T Consensus 224 ----------------------------------------g-------------gg~~~r~~la~aL~~~p~ilildE~~ 250 (330)
T 2pt7_A 224 ----------------------------------------G-------------GNITSADCLKSCLRMRPDRIILGELR 250 (330)
T ss_dssp ----------------------------------------B-------------TTBCHHHHHHHHTTSCCSEEEECCCC
T ss_pred ----------------------------------------C-------------CChhHHHHHHHHhhhCCCEEEEcCCC
Confidence 0 89999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHcCCC-eEEEEeCCcchhhccCEEEEEeCceE
Q 047171 482 SALDAESERIVQEALDQASQGR-TMIIIAHRLSTIRKADLIGVLQSGRV 529 (1224)
Q Consensus 482 s~lD~~~~~~i~~~l~~~~~~~-t~i~i~H~l~~~~~ad~i~vl~~G~i 529 (1224)
+. .+.+.++.+..|+ |+|+++|+++....||||++|++|+.
T Consensus 251 ~~-------e~~~~l~~~~~g~~tvi~t~H~~~~~~~~dri~~l~~g~~ 292 (330)
T 2pt7_A 251 SS-------EAYDFYNVLCSGHKGTLTTLHAGSSEEAFIRLANMSSSNS 292 (330)
T ss_dssp ST-------HHHHHHHHHHTTCCCEEEEEECSSHHHHHHHHHHHHHTSG
T ss_pred hH-------HHHHHHHHHhcCCCEEEEEEcccHHHHHhhhheehhcCCc
Confidence 82 2455666666665 79999999998788999999998854
No 144
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.78 E-value=2.9e-21 Score=225.45 Aligned_cols=152 Identities=15% Similarity=0.166 Sum_probs=114.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcccEEecCCCCCCcccHHHHHhcCCCCCCHHHHH
Q 047171 345 TIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFSTSIKENILIGKPGASMETVV 424 (1224)
Q Consensus 345 ~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~g~~~~~~~~~~ 424 (1224)
.+||+||||||||||+|+|+|+++|++|+|.++|.++. | .++++|++...+.|+.||+.++.+.. .+.
T Consensus 71 ~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t-------~--~~~v~q~~~~~~ltv~D~~g~~~~~~---~~~ 138 (413)
T 1tq4_A 71 NVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVT-------M--ERHPYKHPNIPNVVFWDLPGIGSTNF---PPD 138 (413)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC-----------C--CCEEEECSSCTTEEEEECCCGGGSSC---CHH
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecc-------e--eEEeccccccCCeeehHhhcccchHH---HHH
Confidence 89999999999999999999999999999999997653 1 28899997644679999988775422 222
Q ss_pred HHHHHhcHHHHHHhccccccccccCCCCCCChH--HHHHHHHHHHhcc----------CCCEEEEeCCCCCCCHHHHHHH
Q 047171 425 KAAQAANVHDFIMKLNDGYETKVGQFGVQLSGG--QKQRIAIARALIR----------DPKILLLDEATSALDAESERIV 492 (1224)
Q Consensus 425 ~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgG--q~qriaiARal~~----------~~~ililDE~ts~lD~~~~~~i 492 (1224)
+.++..++. .++..+ . |||| ||||++|||||.+ +|++++|||||++||+.++..+
T Consensus 139 ~~L~~~~L~--------~~~~~~----~-lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l 205 (413)
T 1tq4_A 139 TYLEKMKFY--------EYDFFI----I-ISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKV 205 (413)
T ss_dssp HHHHHTTGG--------GCSEEE----E-EESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHH
T ss_pred HHHHHcCCC--------ccCCeE----E-eCCCCccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHH
Confidence 333332211 112222 2 9999 9999999999999 9999999999999999988888
Q ss_pred HHHHHHHc------C----CCeEEEEeCCcch--hhc-cCEE
Q 047171 493 QEALDQAS------Q----GRTMIIIAHRLST--IRK-ADLI 521 (1224)
Q Consensus 493 ~~~l~~~~------~----~~t~i~i~H~l~~--~~~-ad~i 521 (1224)
.+.+++.. . .+++++.||.++. ++. +|+|
T Consensus 206 ~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I 247 (413)
T 1tq4_A 206 LQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKL 247 (413)
T ss_dssp HHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHH
Confidence 88777652 1 2567788998886 655 7766
No 145
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.78 E-value=3.5e-21 Score=227.91 Aligned_cols=185 Identities=14% Similarity=0.114 Sum_probs=145.0
Q ss_pred ccEEEEeEEEECCC-C---------CCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCE---ecCCCC-----HH
Q 047171 326 GEIEFKDVDFSYPT-R---------PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGH---KIKKLQ-----LK 387 (1224)
Q Consensus 326 ~~i~~~~v~f~y~~-~---------~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~---~~~~~~-----~~ 387 (1224)
..++++||++.|+. . .++++++|+||||||||||+++|+|+++|+.|.|.++|+ +++++. ..
T Consensus 130 ~~l~~~~v~~~~~tg~~vld~vl~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~~~~ 209 (438)
T 2dpy_A 130 NPLQRTPIEHVLDTGVRAINALLTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILGPD 209 (438)
T ss_dssp CTTTSCCCCSBCCCSCHHHHHHSCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTTHHH
T ss_pred CceEEeccceecCCCceEEeeeEEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhcccc
Confidence 45888999999963 2 357799999999999999999999999999999999998 554432 34
Q ss_pred HHhcccEEecCC-CCCC-cccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHH
Q 047171 388 WLRSQMGLVNQE-PILF-STSIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIA 465 (1224)
Q Consensus 388 ~~r~~i~~v~Q~-~~lf-~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiA 465 (1224)
.+++.++||+|+ ..++ ..|+.+|+.+.. +.... + ...... +-+...+||||| |||+||
T Consensus 210 ~l~r~i~~v~q~~~~~~~~~~v~~~~~~~a------e~~~~-~-----------~~~v~~-~ld~l~~lS~g~-qrvslA 269 (438)
T 2dpy_A 210 GRARSVVIAAPADVSPLLRMQGAAYATRIA------EDFRD-R-----------GQHVLL-IMDSLTRYAMAQ-REIALA 269 (438)
T ss_dssp HHHTEEEEEECTTSCHHHHHHHHHHHHHHH------HHHHT-T-----------TCEEEE-EEECHHHHHHHH-HHHHHH
T ss_pred ccCceEEEEECCCCCHHHHHHHHHHHHHHH------HHHHh-C-----------CCCHHH-HHHhHHHHHHHH-HHHHHH
Confidence 578899999995 3333 558999987631 11110 0 000111 113367899999 999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC-----CC-----eEEEEeCCcchhhccCEEEEEeCceEEeecCh
Q 047171 466 RALIRDPKILLLDEATSALDAESERIVQEALDQASQ-----GR-----TMIIIAHRLSTIRKADLIGVLQSGRVIESGSH 535 (1224)
Q Consensus 466 Ral~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~-----~~-----t~i~i~H~l~~~~~ad~i~vl~~G~i~~~g~~ 535 (1224)
+.+|++ |++||+.+...+.+.++++.+ |+ |++++||+++ ...||++++|.+|+|+.+|++
T Consensus 270 ---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~-~~iad~v~~l~dG~Ivl~~~~ 339 (438)
T 2dpy_A 270 ---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ-DPIADSARAILDGHIVLSRRL 339 (438)
T ss_dssp ---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC-CHHHHHHHHHSSEEEEECHHH
T ss_pred ---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc-chhhceEEEEeCcEEEEeCCH
Confidence 899998 999999999999999988654 54 9999999999 666999999999999999998
Q ss_pred HHHHh
Q 047171 536 DVLMQ 540 (1224)
Q Consensus 536 ~~l~~ 540 (1224)
+++..
T Consensus 340 ~~~~~ 344 (438)
T 2dpy_A 340 AEAGH 344 (438)
T ss_dssp HHTTC
T ss_pred HHccC
Confidence 88653
No 146
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.78 E-value=1.7e-21 Score=204.59 Aligned_cols=159 Identities=20% Similarity=0.187 Sum_probs=123.4
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcceEEEecCCCCCcccHHHHHccCCCCCCHHH
Q 047171 1006 GKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIALVSQEPTLFAGTIRQNIVYGKEVATEAE 1085 (1224)
Q Consensus 1006 Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qdp~LF~gTIreNl~~~~~~~~dee 1085 (1224)
|++++|+||||||||||+++|+|+++ ++| |.+||.++.++ ..+++++++++|+. +++ ++|+.......+
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~~~--~~~~~~ig~~~~~~---~g~-~~~l~~~~~~~~--- 69 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTEEV--RQGGRRIGFDVVTL---SGT-RGPLSRVGLEPP--- 69 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECCEE--ETTSSEEEEEEEET---TSC-EEEEEECCCCCC---
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecchh--HhhhceEEEEEEec---ccc-eehhhcccccCC---
Confidence 78999999999999999999999999 999 99999988654 35789999999996 443 334432110000
Q ss_pred HHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHH-HHHH---HHccCCCEEEEec--cCCCCCHHHHHHHHHHH
Q 047171 1086 IRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRI-ALAR---AVLKNPMILLLDE--ATSALDSASENLVQEAL 1159 (1224)
Q Consensus 1086 i~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRl-aLAR---All~~p~ILlLDE--aTSaLD~~te~~I~~~l 1159 (1224)
+...+..+|+.+..+|+|||+++ +++| |++++|+|||||| ||..+|....+.+.+.+
T Consensus 70 -----------------~~~~~~~v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l 132 (189)
T 2i3b_A 70 -----------------PGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTL 132 (189)
T ss_dssp -----------------SSSCCEESSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHH
T ss_pred -----------------ccccccccceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHH
Confidence 11133478888999999999998 5566 7899999999999 89889999888888877
Q ss_pred HHhcCCCeEE----EEccCchhhhhcCEEEEEeCCEEEEec
Q 047171 1160 EKMMVGRTCV----VVAHRLSTIQKADNIVVIKNGKVVEQG 1196 (1224)
Q Consensus 1160 ~~~~~~~TvI----~IaHrl~ti~~aD~I~vl~~G~Ive~G 1196 (1224)
+. .+|+| +|+||.+ ...+|+|..+++|+|.+..
T Consensus 133 ~~---~~~~ilgti~vsh~~~-~~~vd~i~~~~~~~i~~~~ 169 (189)
T 2i3b_A 133 ST---PGTIILGTIPVPKGKP-LALVEEIRNRKDVKVFNVT 169 (189)
T ss_dssp HC---SSCCEEEECCCCCSSC-CTTHHHHHTTCCSEEEECC
T ss_pred hC---CCcEEEEEeecCCCCc-hHHHHHHeecCCcEEEEeC
Confidence 63 34555 3449886 5568888888999998754
No 147
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.78 E-value=4.6e-19 Score=203.86 Aligned_cols=81 Identities=21% Similarity=0.290 Sum_probs=75.2
Q ss_pred CCChHHHHHHHHHHHhc---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCCcchhhccCEEEE
Q 047171 453 QLSGGQKQRIAIARALI---------RDPKILLLDEATSALDAESERIVQEALDQASQGRTMIIIAHRLSTIRKADLIGV 523 (1224)
Q Consensus 453 ~LSgGq~qriaiARal~---------~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~i~H~l~~~~~ad~i~v 523 (1224)
.||||||||++|||+|+ .+|+|||||||||+||+.....+.+.+.+.. .|+|++|| ++. .||++++
T Consensus 265 ~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~--qt~i~~th-~~~--~~~~i~~ 339 (359)
T 2o5v_A 265 YASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP--QAIVTGTE-LAP--GAALTLR 339 (359)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS--EEEEEESS-CCT--TCSEEEE
T ss_pred hCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC--cEEEEEEe-ccc--cCCEEEE
Confidence 69999999999999999 8999999999999999999999999998764 79999999 454 8999999
Q ss_pred EeCceEEeecChHHH
Q 047171 524 LQSGRVIESGSHDVL 538 (1224)
Q Consensus 524 l~~G~i~~~g~~~~l 538 (1224)
|++|++++.|+++++
T Consensus 340 l~~G~i~~~g~~~~~ 354 (359)
T 2o5v_A 340 AQAGRFTPVADEEMQ 354 (359)
T ss_dssp EETTEEEECCCTTTS
T ss_pred EECCEEEecCCHHHH
Confidence 999999999999876
No 148
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.78 E-value=1e-21 Score=202.36 Aligned_cols=111 Identities=18% Similarity=0.234 Sum_probs=87.8
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcCCCCC---CcEEEECCEecCCCC---HHHHh-cccE----EecCCCCCCcccHHHHHh
Q 047171 344 PTIGLVGSSGSGKSTVISLLERFYDPV---KGNILLDGHKIKKLQ---LKWLR-SQMG----LVNQEPILFSTSIKENIL 412 (1224)
Q Consensus 344 ~~~~ivG~sGsGKSTl~~ll~~~~~~~---~G~i~~~g~~~~~~~---~~~~r-~~i~----~v~Q~~~lf~~ti~~ni~ 412 (1224)
++++|||+||||||||+++|+|+|+|+ .|.|.+||.++.+++ .+.+| +++| +++|++++| +++
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~---i~~--- 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF---IRR--- 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE---EEE---
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE---Eec---
Confidence 378999999999999999999999998 899999999988776 66777 4788 899999887 111
Q ss_pred cCCCCCCHHHHHHHHHHhcHHHHHHh-ccccccccccCCCCCCChHHHHHHHHHHHhccCCCEE
Q 047171 413 IGKPGASMETVVKAAQAANVHDFIMK-LNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKIL 475 (1224)
Q Consensus 413 ~g~~~~~~~~~~~~~~~~~~~~~i~~-l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~il 475 (1224)
+ . ++. .+++++++.. +| |+||.++|+ |||||||||+||||++++|++.
T Consensus 77 -~----~-~~~-----~a~l~~~i~~~l~-g~dt~i~Eg---lSgGq~qri~lARall~~p~i~ 125 (171)
T 2f1r_A 77 -V----S-EEE-----GNDLDWIYERYLS-DYDLVITEG---FSKAGKDRIVVVKKPEEVEHFR 125 (171)
T ss_dssp -C----C-HHH-----HTCHHHHHHHHTT-TCSEEEEES---CGGGCCCEEEECSSGGGGGGGC
T ss_pred -C----C-hhh-----hhCHHHHHHhhCC-CCCEEEECC---cCCCCCcEEEEEecccCCCccC
Confidence 1 1 121 6789999999 99 999999995 9999999999999999999873
No 149
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.78 E-value=1.6e-20 Score=215.61 Aligned_cols=195 Identities=15% Similarity=0.201 Sum_probs=147.9
Q ss_pred ccEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCC-------CC
Q 047171 976 GFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKS-------YN 1048 (1224)
Q Consensus 976 g~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~-------~~ 1048 (1224)
..++.+++++.|+. +..+|+++ |+|.+||++||+|+||||||||+++|.|+.+|+.|.|.++|.+.++ +.
T Consensus 44 ~~i~~~~l~~~~~t--g~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~ev~~~i~~~~ 120 (347)
T 2obl_A 44 DPLLRQVIDQPFIL--GVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLALLP 120 (347)
T ss_dssp CSTTCCCCCSEECC--SCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHTTSC
T ss_pred CCeeecccceecCC--CCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHHHHHHHHHhhh
Confidence 35888999999963 34699999 9999999999999999999999999999999999999999975221 12
Q ss_pred HHHHhcceEEEecCCCCCcccHHHHHccCCCCCCHHHHHHHHHHHhHHHHHHhcccccccc-cCCCCCCCChHHHHHHHH
Q 047171 1049 LRKLRSCIALVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTY-CGERGVQLSGGQKQRIAL 1127 (1224)
Q Consensus 1049 ~~~lR~~i~~V~Qdp~LF~gTIreNl~~~~~~~~deei~~al~~a~l~~~I~~lp~gldt~-vge~G~~LSGGQrQRlaL 1127 (1224)
...+++.+.+++|.+. + ..+.+..+.....+.++... .|.+.. +-+...+||+|| ||+++
T Consensus 121 ~~~~~~~v~~~~~~~~----~------------~~~r~~~~~~~~~~ae~~~~--~~~~vl~~ld~~~~lS~g~-r~v~l 181 (347)
T 2obl_A 121 QSTLSKCVLVVTTSDR----P------------ALERMKAAFTATTIAEYFRD--QGKNVLLMMDSVTRYARAA-RDVGL 181 (347)
T ss_dssp HHHHTTEEEEEECTTS----C------------HHHHHHHHHHHHHHHHHHHT--TTCEEEEEEETHHHHHHHH-HHHHH
T ss_pred hhhhhceEEEEECCCC----C------------HHHHHHHHHHHHHHHHHHHh--ccccHHHHHhhHHHHHHHH-HHHHH
Confidence 2335556667766431 1 12334444444444554332 122211 113456799999 99999
Q ss_pred HHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc---CCC-----eEEEEccCchhhhhcCEEEEEeCCEEEEecChh
Q 047171 1128 ARAVLKNPMILLLDEATSALDSASENLVQEALEKMM---VGR-----TCVVVAHRLSTIQKADNIVVIKNGKVVEQGTQS 1199 (1224)
Q Consensus 1128 ARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~---~~~-----TvI~IaHrl~ti~~aD~I~vl~~G~Ive~Gt~~ 1199 (1224)
| +.+|++ |+++|+.....+.+.+++.. .|. ||+++||+++ -.-||++++|.+|+|+..|+.+
T Consensus 182 a---l~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~-~~i~d~v~~i~dG~Ivl~~~l~ 251 (347)
T 2obl_A 182 A---SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN-DPIGDEVRSILDGHIVLTRELA 251 (347)
T ss_dssp H---TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC-CHHHHHHHHHCSEEEEBCHHHH
T ss_pred H---cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC-ChhhhheEEeeCcEEEEeCCHH
Confidence 9 688888 99999999999999998875 266 8999999999 4559999999999999999887
Q ss_pred HHh
Q 047171 1200 SLL 1202 (1224)
Q Consensus 1200 eLl 1202 (1224)
++.
T Consensus 252 ~~~ 254 (347)
T 2obl_A 252 EEN 254 (347)
T ss_dssp TTT
T ss_pred HcC
Confidence 764
No 150
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=99.77 E-value=3.6e-22 Score=212.52 Aligned_cols=169 Identities=14% Similarity=0.224 Sum_probs=131.5
Q ss_pred EeCCcEEEEEcCCCCChHHHHHHHhcccC-------------CCCceEEECCccCCCCCHHHHhcceEEEecCCCCCccc
Q 047171 1003 IEAGKTVALVGQSGSGKSTIIGLIERFYD-------------PQSGSVMVDERNIKSYNLRKLRSCIALVSQEPTLFAGT 1069 (1224)
Q Consensus 1003 I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~-------------p~~G~I~idG~di~~~~~~~lR~~i~~V~Qdp~LF~gT 1069 (1224)
+++|++++|+||||||||||+++|.|+++ |..|+ +||+++..++.+.+|+.+ +|++++|.++
T Consensus 1 m~~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~--~~g~~~~~~~~~~~~~~i---~~~~~l~~~~ 75 (198)
T 1lvg_A 1 MAGPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGE--EDGKDYYFVTREMMQRDI---AAGDFIEHAE 75 (198)
T ss_dssp ----CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTC--CBTTTBEECCHHHHHHHH---HHTCEEEEEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcc--cCCceEEEccHHHHHHHH---HcCCCEeeee
Confidence 36899999999999999999999999986 78898 699999999999999876 7999999999
Q ss_pred HHHHHccCCCCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHH-HHccCCCEEEEeccCCCCC
Q 047171 1070 IRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALAR-AVLKNPMILLLDEATSALD 1148 (1224)
Q Consensus 1070 IreNl~~~~~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLAR-All~~p~ILlLDEaTSaLD 1148 (1224)
+++|+ +|. ++++++++++.....-+ .-.|+|+++.... ++ .|| +++++|++++|||+|+++|
T Consensus 76 ~~~n~-~g~---~~~~i~~~~~~~~~~~~-~~~~~g~~~~~~~-----------~~-~~~~~~l~~p~~~ilde~~~~~d 138 (198)
T 1lvg_A 76 FSGNL-YGT---SKEAVRAVQAMNRICVL-DVDLQGVRSIKKT-----------DL-CPIYIFVQPPSLDVLEQRLRLRN 138 (198)
T ss_dssp ETTEE-EEE---EHHHHHHHHHTTCEEEE-ECCHHHHHHHTTS-----------SC-CCEEEEEECSCHHHHHHHHHHHT
T ss_pred ecCcc-CCC---CHHHHHHHHHcCCcEEE-ECCHHHHHHHHhc-----------CC-CcEEEEEeCCCHHHHHHHHHhcC
Confidence 99998 663 67888888865321111 1245677765431 12 677 8999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCEEEEecChhHHhh
Q 047171 1149 SASENLVQEALEKMMVGRTCVVVAHRLSTIQKADNIVVIKNGKVVEQGTQSSLLS 1203 (1224)
Q Consensus 1149 ~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~aD~I~vl~~G~Ive~Gt~~eLl~ 1203 (1224)
.++++.|++.|.+..++ +.++| ++ ..||+|+|+++ -..+.++|.+
T Consensus 139 ~~~e~~i~~~l~~~~~~---~~~a~--~~-~~~D~iivnd~----le~a~~~l~~ 183 (198)
T 1lvg_A 139 TETEESLAKRLAAARTD---MESSK--EP-GLFDLVIINDD----LDKAYATLKQ 183 (198)
T ss_dssp CSCHHHHHHHHHHHHHH---TTGGG--ST-TTCSEEEECSS----HHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH---HHHhh--cc-CCceEEEECCC----HHHHHHHHHH
Confidence 99999999999877554 45678 55 78999999875 2345666643
No 151
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.76 E-value=1.7e-20 Score=211.80 Aligned_cols=167 Identities=17% Similarity=0.215 Sum_probs=119.2
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCC----HHHH--hcccEEecCCCC-CCcc-cHHHHHhc
Q 047171 342 DTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQ----LKWL--RSQMGLVNQEPI-LFST-SIKENILI 413 (1224)
Q Consensus 342 ~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~----~~~~--r~~i~~v~Q~~~-lf~~-ti~~ni~~ 413 (1224)
++++++|||||||||||+++.|+|+++|++|+|.++|.|+.... ...+ |.+|+||+|++. +++. |++||+.+
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~~~v~e~l~~ 178 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAVKR 178 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHHHHHHHHHHH
Confidence 45699999999999999999999999999999999999876542 1223 457999999997 7654 99999976
Q ss_pred CCCCCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCC--EEEEeCCCCCCCHHHHHH
Q 047171 414 GKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPK--ILLLDEATSALDAESERI 491 (1224)
Q Consensus 414 g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~--ililDE~ts~lD~~~~~~ 491 (1224)
+.....+. ..++.+ |..........+|| |||++||||+..+|+ +|+|| ||+++|+.+..
T Consensus 179 ~~~~~~d~------------~lldt~--gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-ptsglD~~~~~- 239 (302)
T 3b9q_A 179 GKEEGYDV------------VLCDTS--GRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQA- 239 (302)
T ss_dssp HHHTTCSE------------EEECCC--CCSSCCHHHHHHHH---HHHHHHHTTSTTCCSEEEEEEE-GGGGGGGHHHH-
T ss_pred HHHcCCcc------------hHHhcC--CCCcchhHHHHHHH---HHHHHHHHhhccCCCeeEEEEe-CCCCcCHHHHH-
Confidence 42100000 011111 22222223334588 999999999999999 99999 99999998653
Q ss_pred HHHHHHHHcCCCeEEEEeC---------Ccchhhc-cCEEEEEeCceEE
Q 047171 492 VQEALDQASQGRTMIIIAH---------RLSTIRK-ADLIGVLQSGRVI 530 (1224)
Q Consensus 492 i~~~l~~~~~~~t~i~i~H---------~l~~~~~-ad~i~vl~~G~i~ 530 (1224)
+.+.+ ..|.|+|++|| .++.+.. .+.|.++..|+.+
T Consensus 240 --~~~~~-~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~~ 285 (302)
T 3b9q_A 240 --REFNE-VVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEAV 285 (302)
T ss_dssp --HHHHH-HTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSSG
T ss_pred --HHHHH-hcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCCh
Confidence 12221 24889999999 3334433 7799999999653
No 152
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.76 E-value=1e-20 Score=214.49 Aligned_cols=173 Identities=18% Similarity=0.239 Sum_probs=120.6
Q ss_pred cccccEEEEeEEEECCC-------------------------------CCCCCEEEEEcCCCCcHHHHHHHHhcCCCCCC
Q 047171 323 YLRGEIEFKDVDFSYPT-------------------------------RPDTPTIGLVGSSGSGKSTVISLLERFYDPVK 371 (1224)
Q Consensus 323 ~~~~~i~~~~v~f~y~~-------------------------------~~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~ 371 (1224)
...+.|+++||++.|.. .+++.++||+||||||||||+++|.|+++|+.
T Consensus 39 ~~~~~i~~~~v~~~y~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~ 118 (312)
T 3aez_A 39 GLGEQIDLLEVEEVYLPLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALLARWD 118 (312)
T ss_dssp CTTCCCCHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHHHTST
T ss_pred CCCCeEEeeehhhhhhhHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHhhccccC
Confidence 44567999999998831 24566999999999999999999999999986
Q ss_pred cEEEECCEecCCCCHHHHhcccEEecCCCCCCcccHHHHHhcCCC-CCCHHHHHHHHHHhcHHHHHHhccccccccccCC
Q 047171 372 GNILLDGHKIKKLQLKWLRSQMGLVNQEPILFSTSIKENILIGKP-GASMETVVKAAQAANVHDFIMKLNDGYETKVGQF 450 (1224)
Q Consensus 372 G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~g~~-~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~ 450 (1224)
|. +++++|+|++++++.|++||+.+... +... +.....+.++++.++.|.. ...
T Consensus 119 G~-----------------~~v~~v~qd~~~~~~t~~e~~~~~~~~g~~~-----~~d~~~~~~~L~~l~~~~~---~~~ 173 (312)
T 3aez_A 119 HH-----------------PRVDLVTTDGFLYPNAELQRRNLMHRKGFPE-----SYNRRALMRFVTSVKSGSD---YAC 173 (312)
T ss_dssp TC-----------------CCEEEEEGGGGBCCHHHHHHTTCTTCTTSGG-----GBCHHHHHHHHHHHHTTCS---CEE
T ss_pred CC-----------------CeEEEEecCccCCcccHHHHHHHHHhcCCCh-----HHHHHHHHHHHHHhCCCcc---cCC
Confidence 63 36999999999998899999976321 1111 0111223455666654543 123
Q ss_pred CCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCCcchhh--ccCEEEEEeCc
Q 047171 451 GVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQASQGRTMIIIAHRLSTIR--KADLIGVLQSG 527 (1224)
Q Consensus 451 g~~LSgGq~qriaiARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~i~H~l~~~~--~ad~i~vl~~G 527 (1224)
...|||||+||+++|||++.+|+|||||||++.+|+.. ..+.+.. + .+|+|+|+.+... ..+|.+.+.+|
T Consensus 174 ~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~-----~~l~~~~-D-~~I~V~a~~~~~~~R~i~R~~~~rd~ 245 (312)
T 3aez_A 174 APVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPT-----LMVSDLF-D-FSLYVDARIEDIEQWYVSRFLAMRTT 245 (312)
T ss_dssp EEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSS-----CCGGGGC-S-EEEEEEECHHHHHHHHHHHHHHHTTT
T ss_pred cccCChhhhhhhhhHHHhccCCCEEEECCccccCCcch-----HHHHHhc-C-cEEEEECCHHHHHHHHHHHHHHHHhc
Confidence 45899999999999999999999999999999998621 0111111 2 4466666665532 25555444443
No 153
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.75 E-value=1.5e-18 Score=211.94 Aligned_cols=76 Identities=22% Similarity=0.337 Sum_probs=71.3
Q ss_pred CCC-ChHHHHHHHHHHHHccCC--CEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCC
Q 047171 1115 VQL-SGGQKQRIALARAVLKNP--MILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLSTIQKADNIVVIKNG 1190 (1224)
Q Consensus 1115 ~~L-SGGQrQRlaLARAll~~p--~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~aD~I~vl~~G 1190 (1224)
.+| |||||||++||||++.+| ++|||||||++||+.+...|.+.|+++.+++|||+|||+++.+..||++++|++|
T Consensus 395 ~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~~~~vi~itH~~~~~~~~d~~~~~~~~ 473 (517)
T 4ad8_A 395 SDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAARAHHHYKVEKQ 473 (517)
T ss_dssp SSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHHHSEEEEECCCHHHHHHSSEEEEEECC
T ss_pred HhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEEecc
Confidence 456 999999999999999999 9999999999999999999999999887789999999999998889999999554
No 154
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.75 E-value=1e-18 Score=198.34 Aligned_cols=181 Identities=14% Similarity=0.132 Sum_probs=123.5
Q ss_pred cceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCc-eEEECCccCCCCCHHHHhcceEEEecCCCCCcccHHH
Q 047171 994 MIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSG-SVMVDERNIKSYNLRKLRSCIALVSQEPTLFAGTIRQ 1072 (1224)
Q Consensus 994 ~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G-~I~idG~di~~~~~~~lR~~i~~V~Qdp~LF~gTIre 1072 (1224)
++|+++++.+++|+.++|+||||||||||++.|++...|.+| .|.+.+.+. +...+++++..+.|+..+ +..+
T Consensus 23 ~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~---~~~~~~~r~~~~~~~~~~---~~~~ 96 (296)
T 1cr0_A 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEE---SVEETAEDLIGLHNRVRL---RQSD 96 (296)
T ss_dssp TTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSS---CHHHHHHHHHHHHTTCCG---GGCH
T ss_pred HHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcC---CHHHHHHHHHHHHcCCCh---hhcc
Confidence 479999999999999999999999999999999999999878 776655433 566677666666555432 2233
Q ss_pred HHccCCCCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHH-HHHHHHHHHHccCCCEEEEeccCC---C--
Q 047171 1073 NIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQ-KQRIALARAVLKNPMILLLDEATS---A-- 1146 (1224)
Q Consensus 1073 Nl~~~~~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQ-rQRlaLARAll~~p~ILlLDEaTS---a-- 1146 (1224)
|+..+. .++++..+++ .+++...+-+ +.+...++|.+| +||+. |+|+..+|++|||||||+ +
T Consensus 97 ~l~~~~--~~~~~~~~~~-----~~~l~~~~l~----i~~~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~ 164 (296)
T 1cr0_A 97 SLKREI--IENGKFDQWF-----DELFGNDTFH----LYDSFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASG 164 (296)
T ss_dssp HHHHHH--HHHTHHHHHH-----HHHHSSSCEE----EECCCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC-------
T ss_pred ccccCC--CCHHHHHHHH-----HHHhccCCEE----EECCCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCC
Confidence 443221 1223333222 1222222222 223335689999 67777 999999999999999999 4
Q ss_pred -CCH-HHHHHHHHHHHHhc--CCCeEEEEccCc--h--------------------hhh-hcCEEEEEeCCEE
Q 047171 1147 -LDS-ASENLVQEALEKMM--VGRTCVVVAHRL--S--------------------TIQ-KADNIVVIKNGKV 1192 (1224)
Q Consensus 1147 -LD~-~te~~I~~~l~~~~--~~~TvI~IaHrl--~--------------------ti~-~aD~I~vl~~G~I 1192 (1224)
+|. .....+.+.|+++. .++|||+++|.. + .+. .||+|++|++|+.
T Consensus 165 ~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 165 ESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp ----CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred CCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 444 55567778887764 289999999995 4 554 4999999998875
No 155
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.74 E-value=5.2e-20 Score=225.35 Aligned_cols=168 Identities=14% Similarity=0.148 Sum_probs=122.2
Q ss_pred CccceeceeE-EEeCCcEEEEEcCCCCChHHHHHH--HhcccCCCCceEEECCccCCCCCHHHHhcceEEEecCCCCCcc
Q 047171 992 DQMIFKGLTL-KIEAGKTVALVGQSGSGKSTIIGL--IERFYDPQSGSVMVDERNIKSYNLRKLRSCIALVSQEPTLFAG 1068 (1224)
Q Consensus 992 ~~~vL~~isl-~I~~Ge~vaIVG~SGsGKSTL~~l--L~rl~~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qdp~LF~g 1068 (1224)
+.++|+++|| .|++||.++|+||||||||||++. +.|+++|.+|.|+++|.+. ..+....++++++++|++...
T Consensus 24 g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~-~~~~~~~~~~~g~~~q~~~~~-- 100 (525)
T 1tf7_A 24 MIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEET-PQDIIKNARSFGWDLAKLVDE-- 100 (525)
T ss_dssp CCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSC-HHHHHHHHGGGTCCHHHHHHT--
T ss_pred CchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCC-HHHHHHHHHHcCCChHHhhcc--
Confidence 3569999999 999999999999999999999999 6899999999999999883 223445677899999997521
Q ss_pred cHHHHHccCCCCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeccCCC--
Q 047171 1069 TIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSA-- 1146 (1224)
Q Consensus 1069 TIreNl~~~~~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll~~p~ILlLDEaTSa-- 1146 (1224)
+|+.+.... .+++.+++++..++.++....+. .|||| +|++|+|||||+.
T Consensus 101 ---~~l~~~~~~-~~~~~~~~l~~~~l~~~~~~~~~-----------~LS~g-------------~~~~lilDe~t~~~~ 152 (525)
T 1tf7_A 101 ---GKLFILDAS-PDPEGQEVVGGFDLSALIERINY-----------AIQKY-------------RARRVSIDSVTSVFQ 152 (525)
T ss_dssp ---TSEEEEECC-CCSSCCSCCSSHHHHHHHHHHHH-----------HHHHH-------------TCSEEEEECSTTTST
T ss_pred ---CcEEEEecC-cccchhhhhcccCHHHHHHHHHH-----------HHHHc-------------CCCEEEECCHHHHHH
Confidence 122111100 00011112223333333332221 25666 4779999999984
Q ss_pred ---CCHHHHHHHHHHHHHhc-CCCeEEEEccCchhh---------hh-cCEEEEEeCC
Q 047171 1147 ---LDSASENLVQEALEKMM-VGRTCVVVAHRLSTI---------QK-ADNIVVIKNG 1190 (1224)
Q Consensus 1147 ---LD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti---------~~-aD~I~vl~~G 1190 (1224)
+|+...+.+.+.++.+. .|+|+|+|+|+++.+ .. ||+|++|++|
T Consensus 153 ~~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~~~ 210 (525)
T 1tf7_A 153 QYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRNV 210 (525)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEEE
T ss_pred hcCCHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCccccccccceeeeeeEEEEEEEE
Confidence 58899999999998764 489999999999984 45 9999999983
No 156
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.74 E-value=9.4e-20 Score=209.06 Aligned_cols=166 Identities=17% Similarity=0.208 Sum_probs=120.3
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCC----HHHH--hcccEEecCCCC-CCc-ccHHHHHhc
Q 047171 342 DTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQ----LKWL--RSQMGLVNQEPI-LFS-TSIKENILI 413 (1224)
Q Consensus 342 ~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~----~~~~--r~~i~~v~Q~~~-lf~-~ti~~ni~~ 413 (1224)
++.+++|||||||||||+++.|+|+++|++|+|.++|.|+.... ...+ |.+|+|++|++. +++ .|++||+.+
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~tv~e~l~~ 235 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAVKR 235 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhhhHHHHHHH
Confidence 46699999999999999999999999999999999999876542 1222 467999999987 665 499999976
Q ss_pred CCCCCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCC--EEEEeCCCCCCCHHHHHH
Q 047171 414 GKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPK--ILLLDEATSALDAESERI 491 (1224)
Q Consensus 414 g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~--ililDE~ts~lD~~~~~~ 491 (1224)
+.....+. ..++.+ |..........+|| |||++||||+..+|+ +|+|| ||+++|+.++..
T Consensus 236 ~~~~~~d~------------~lldt~--Gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-pttglD~~~~~~ 297 (359)
T 2og2_A 236 GKEEGYDV------------VLCDTS--GRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQAR 297 (359)
T ss_dssp HHHTTCSE------------EEEECC--CCSSCCHHHHHHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGGGGGHHHHH
T ss_pred HHhCCCHH------------HHHHhc--CCChhhhhHHHHHH---HHHHHHHHHHhcCCCceEEEEc-CCCCCCHHHHHH
Confidence 42100000 011111 22222222334588 999999999999999 99999 999999986531
Q ss_pred HHHHHHHHcCCCeEEEEeC---------Ccchhhc-cCEEEEEeCceE
Q 047171 492 VQEALDQASQGRTMIIIAH---------RLSTIRK-ADLIGVLQSGRV 529 (1224)
Q Consensus 492 i~~~l~~~~~~~t~i~i~H---------~l~~~~~-ad~i~vl~~G~i 529 (1224)
.+.+ ..|.|+|++|| .++.+.. .+.|.++..|+.
T Consensus 298 ---~~~~-~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge~ 341 (359)
T 2og2_A 298 ---EFNE-VVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 341 (359)
T ss_dssp ---HHHH-HTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred ---HHHH-hcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCCC
Confidence 1211 24889999999 2344433 789999999964
No 157
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.73 E-value=2.4e-17 Score=190.31 Aligned_cols=75 Identities=25% Similarity=0.360 Sum_probs=67.6
Q ss_pred CCCCChHHHH------HHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhhcCEEEE
Q 047171 1114 GVQLSGGQKQ------RIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMM-VGRTCVVVAHRLSTIQKADNIVV 1186 (1224)
Q Consensus 1114 G~~LSGGQrQ------RlaLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~aD~I~v 1186 (1224)
...||||||| |+++|||++.+|++|||||||++||+.+...+.+.|+++. .++|+|+|||+.+....||+|++
T Consensus 246 ~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~~~~~~d~~~~ 325 (339)
T 3qkt_A 246 LTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADHVIR 325 (339)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGGGGGGCSEEEE
T ss_pred hHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHHHHHhCCEEEE
Confidence 4579999999 6788899999999999999999999999999999998864 46899999999877777999999
Q ss_pred Ee
Q 047171 1187 IK 1188 (1224)
Q Consensus 1187 l~ 1188 (1224)
|+
T Consensus 326 l~ 327 (339)
T 3qkt_A 326 IS 327 (339)
T ss_dssp EE
T ss_pred EE
Confidence 85
No 158
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.73 E-value=2.8e-18 Score=221.66 Aligned_cols=172 Identities=16% Similarity=0.165 Sum_probs=123.4
Q ss_pred ccEEEEE-----EEEECCCCCCccceeceeEEEeC-------CcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCcc
Q 047171 976 GFIELKN-----VFFSYPSRPDQMIFKGLTLKIEA-------GKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERN 1043 (1224)
Q Consensus 976 g~I~~~~-----vsf~Y~~~~~~~vL~~isl~I~~-------Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~d 1043 (1224)
+.|+++| |++.|+. +..|++|++|++++ |+.++|+|||||||||+++.+ |+..+
T Consensus 749 ~~l~i~~~rHP~l~~~~~~--~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~----------- 814 (1022)
T 2o8b_B 749 PFLELKGSRHPCITKTFFG--DDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV----------- 814 (1022)
T ss_dssp CCEEEEEECCCC------C--CCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH-----------
T ss_pred ceEEEEeccccEEEEEecC--CceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH-----------
Confidence 4699999 9999942 34699999999988 999999999999999999999 99863
Q ss_pred CCCCCHHHHhcceE-EEecCCCCCcccHHHHHccCCCCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHH
Q 047171 1044 IKSYNLRKLRSCIA-LVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQK 1122 (1224)
Q Consensus 1044 i~~~~~~~lR~~i~-~V~Qdp~LF~gTIreNl~~~~~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQr 1122 (1224)
+.++| ||||++. ..|+.|||... - ++.+.+. .+-+++|+|++
T Consensus 815 ---------~aqiG~~Vpq~~~--~l~v~d~I~~r-i--------------g~~d~~~-----------~~~stf~~em~ 857 (1022)
T 2o8b_B 815 ---------MAQMGCYVPAEVC--RLTPIDRVFTR-L--------------GASDRIM-----------SGESTFFVELS 857 (1022)
T ss_dssp ---------HHTTTCCEESSEE--EECCCSBEEEE-C--------------C--------------------CHHHHHHH
T ss_pred ---------HhheeEEeccCcC--CCCHHHHHHHH-c--------------CCHHHHh-----------hchhhhHHHHH
Confidence 34566 9999983 55777776321 0 1111111 11235777776
Q ss_pred HHHHHHHHHccCCCEEEEeccCCCCCHHH-HHHHHHHHHHhc-C-CCeEEEEccCchhhhh-cCEEEEEeCCEEE--Eec
Q 047171 1123 QRIALARAVLKNPMILLLDEATSALDSAS-ENLVQEALEKMM-V-GRTCVVVAHRLSTIQK-ADNIVVIKNGKVV--EQG 1196 (1224)
Q Consensus 1123 QRlaLARAll~~p~ILlLDEaTSaLD~~t-e~~I~~~l~~~~-~-~~TvI~IaHrl~ti~~-aD~I~vl~~G~Iv--e~G 1196 (1224)
+ +++||+++.+|+++||||||+++|+.. ...+++.++.+. + ++|+|++||.++.+.. ||++.|+ +|++. +.|
T Consensus 858 ~-~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~~~~~d~~~v~-~g~~~~~~~~ 935 (1022)
T 2o8b_B 858 E-TASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVR-LGHMACMVEN 935 (1022)
T ss_dssp H-HHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHHHTSSCSSEE-EEEEEEC---
T ss_pred H-HHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHhCCcceee-cCeEEEEEec
Confidence 5 999999999999999999999999886 566778887765 3 8999999999999876 8998886 58887 556
Q ss_pred ChhH
Q 047171 1197 TQSS 1200 (1224)
Q Consensus 1197 t~~e 1200 (1224)
++++
T Consensus 936 ~~~~ 939 (1022)
T 2o8b_B 936 ECED 939 (1022)
T ss_dssp ----
T ss_pred Cccc
Confidence 5443
No 159
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.73 E-value=3.8e-20 Score=194.24 Aligned_cols=157 Identities=18% Similarity=0.236 Sum_probs=117.2
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcccEEecCCCCCCcccHHHHHhcCCCCCCHHHH
Q 047171 344 PTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFSTSIKENILIGKPGASMETV 423 (1224)
Q Consensus 344 ~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~g~~~~~~~~~ 423 (1224)
++++|+||||||||||+++|+|+++ ++| |.++|.++.+++ .+++++||++|+. .++ ++|+.- .....+
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~~~~--~~~~~ig~~~~~~---~g~-~~~l~~--~~~~~~-- 69 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTEEVR--QGGRRIGFDVVTL---SGT-RGPLSR--VGLEPP-- 69 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECCEEE--TTSSEEEEEEEET---TSC-EEEEEE--CCCCCC--
T ss_pred CEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecchhH--hhhceEEEEEEec---ccc-eehhhc--ccccCC--
Confidence 4789999999999999999999999 999 999999886543 4688899999986 232 122211 000000
Q ss_pred HHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHH-HHHH---HhccCCCEEEEeC--CCCCCCHHHHHHHHHHHH
Q 047171 424 VKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRI-AIAR---ALIRDPKILLLDE--ATSALDAESERIVQEALD 497 (1224)
Q Consensus 424 ~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qri-aiAR---al~~~~~ililDE--~ts~lD~~~~~~i~~~l~ 497 (1224)
+...+..+|+.+..+|||||+++ ++++ |+..+|+|||||| ||..+|....+.+.+.++
T Consensus 70 ----------------~~~~~~~v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~ 133 (189)
T 2i3b_A 70 ----------------PGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLS 133 (189)
T ss_dssp ----------------SSSCCEESSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHH
T ss_pred ----------------ccccccccceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHHh
Confidence 00123478899999999999999 5566 7899999999999 898899987777776665
Q ss_pred HHcCCCeEEE--Ee--CCcchhhccCEEEEEeCceEEee
Q 047171 498 QASQGRTMII--IA--HRLSTIRKADLIGVLQSGRVIES 532 (1224)
Q Consensus 498 ~~~~~~t~i~--i~--H~l~~~~~ad~i~vl~~G~i~~~ 532 (1224)
..+|+|+ ++ ||.+ ....|+|..+++|+|++-
T Consensus 134 ---~~~~~ilgti~vsh~~~-~~~vd~i~~~~~~~i~~~ 168 (189)
T 2i3b_A 134 ---TPGTIILGTIPVPKGKP-LALVEEIRNRKDVKVFNV 168 (189)
T ss_dssp ---CSSCCEEEECCCCCSSC-CTTHHHHHTTCCSEEEEC
T ss_pred ---CCCcEEEEEeecCCCCc-hHHHHHHeecCCcEEEEe
Confidence 2456664 44 9886 455788888889999864
No 160
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.73 E-value=1.4e-19 Score=199.38 Aligned_cols=167 Identities=14% Similarity=0.147 Sum_probs=107.7
Q ss_pred CccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcceEEEecCCCCCcccHH
Q 047171 992 DQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIALVSQEPTLFAGTIR 1071 (1224)
Q Consensus 992 ~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qdp~LF~gTIr 1071 (1224)
+.++|+|+||++++|+.+||+|||||||||++++|.+++ |.+.+| ..++.+++++|++....-|+.
T Consensus 11 ~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l----G~~~~~----------~~~~~i~~v~~d~~~~~l~~~ 76 (245)
T 2jeo_A 11 VDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL----GQNEVE----------QRQRKVVILSQDRFYKVLTAE 76 (245)
T ss_dssp ------------CCSEEEEEECSTTSSHHHHHHHHHHHH----TGGGSC----------GGGCSEEEEEGGGGBCCCCHH
T ss_pred CceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh----chhccc----------ccCCceEEEeCCcCccccCHh
Confidence 456999999999999999999999999999999999977 666555 367889999999754456899
Q ss_pred HHHccCCCC--------CCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEecc
Q 047171 1072 QNIVYGKEV--------ATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEA 1143 (1224)
Q Consensus 1072 eNl~~~~~~--------~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll~~p~ILlLDEa 1143 (1224)
+|+.+.... .+.+++.+. +..+..+.+..+ ..||+||+||+++ ++++.+|+++|||||
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~---------L~~l~~~~~~~~----~~ls~g~~~r~~~-~~~~~~~~~lilDg~ 142 (245)
T 2jeo_A 77 QKAKALKGQYNFDHPDAFDNDLMHRT---------LKNIVEGKTVEV----PTYDFVTHSRLPE-TTVVYPADVVLFEGI 142 (245)
T ss_dssp HHHHHHTTCCCTTSGGGBCHHHHHHH---------HHHHHTTCCEEE----CCEETTTTEECSS-CEEECCCSEEEEECT
T ss_pred HhhhhhccCCCCCCcccccHHHHHHH---------HHHHHCCCCeec----ccccccccCccCc-eEEecCCCEEEEeCc
Confidence 988643211 112222222 222223444444 4699999999988 688999999999998
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhh-hh-cCEEEEEeCCEEEEecChhHHhh
Q 047171 1144 TSALDSASENLVQEALEKMMVGRTCVVVAHRLSTI-QK-ADNIVVIKNGKVVEQGTQSSLLS 1203 (1224)
Q Consensus 1144 TSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti-~~-aD~I~vl~~G~Ive~Gt~~eLl~ 1203 (1224)
....|.. +.+. .+.|++++||....+ +. ++.+ ++|+ +++++++
T Consensus 143 ~~~~~~~--------l~~~-~~~~i~v~th~~~~~~r~~~r~~---~~G~-----~~e~~~~ 187 (245)
T 2jeo_A 143 LVFYSQE--------IRDM-FHLRLFVDTDSDVRLSRRVLRDV---RRGR-----DLEQILT 187 (245)
T ss_dssp TTTTSHH--------HHTT-CSEEEEEECCHHHHHHHHHHHHT---C--------CHHHHHH
T ss_pred cccccHH--------HHHh-cCeEEEEECCHHHHHHHHHHHHH---HcCC-----CHHHHHH
Confidence 8777753 2222 378999999974433 43 3334 6675 6777764
No 161
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.71 E-value=7.7e-17 Score=186.11 Aligned_cols=77 Identities=26% Similarity=0.341 Sum_probs=68.7
Q ss_pred CCCCCCChHHHH------HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHH-cCCCeEEEEeCCcchhhccCEE
Q 047171 449 QFGVQLSGGQKQ------RIAIARALIRDPKILLLDEATSALDAESERIVQEALDQA-SQGRTMIIIAHRLSTIRKADLI 521 (1224)
Q Consensus 449 ~~g~~LSgGq~q------riaiARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~-~~~~t~i~i~H~l~~~~~ad~i 521 (1224)
.....||||||| |+++|||++.+|++|||||||++||+.....+.+.|.++ .+++|+|+|||+.+....||+|
T Consensus 244 ~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~~~~~~d~~ 323 (339)
T 3qkt_A 244 RPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADHV 323 (339)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGGGGGGCSEE
T ss_pred CChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHHHHHhCCEE
Confidence 456789999999 678889999999999999999999999999999999875 4578999999998766779999
Q ss_pred EEEe
Q 047171 522 GVLQ 525 (1224)
Q Consensus 522 ~vl~ 525 (1224)
++|+
T Consensus 324 ~~l~ 327 (339)
T 3qkt_A 324 IRIS 327 (339)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9986
No 162
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.71 E-value=6.3e-20 Score=196.83 Aligned_cols=159 Identities=16% Similarity=0.103 Sum_probs=107.6
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcccEEecCCCCCCcc-cHHHHHhc-----C
Q 047171 341 PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFST-SIKENILI-----G 414 (1224)
Q Consensus 341 ~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~-ti~~ni~~-----g 414 (1224)
+++++++|+||||||||||+++|+|+++. |.+++.....-+....++.++|++|++.+|.. |+.+|+.. +
T Consensus 18 ~~Gei~~l~GpnGsGKSTLl~~l~gl~~~----i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~l~~~~~~~~ 93 (207)
T 1znw_A 18 AVGRVVVLSGPSAVGKSTVVRCLRERIPN----LHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQGELLEWAEIHG 93 (207)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHHSTT----CEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEEGG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCCc----eEEcccccccCCcccccCCCeeEecCHHHHHHHHhcCCceeehhhcC
Confidence 45779999999999999999999999863 44443221111112235789999999987764 67776632 1
Q ss_pred C-C--CCCHHHHHHHHHH----------hcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCC
Q 047171 415 K-P--GASMETVVKAAQA----------ANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEAT 481 (1224)
Q Consensus 415 ~-~--~~~~~~~~~~~~~----------~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~ililDE~t 481 (1224)
+ . ..+.+++.+.++. .++.++. ......|| ||+.+|++++|||||
T Consensus 94 n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~lS-----------~l~~~p~~~~LDep~ 151 (207)
T 1znw_A 94 GLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIK-----------KTMPEAVT-----------VFLAPPSWQDLQARL 151 (207)
T ss_dssp GTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHH-----------HHCTTSEE-----------EEEECSCHHHHHHHH
T ss_pred chhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHH-----------HhcCCcEE-----------EEEECCCHHHHHHHH
Confidence 0 0 1122233322221 1222221 12223445 899999999999999
Q ss_pred CCC----CHHHHHHHHHHHHHHc--CCCeEEEEeCCcchhhc-cCEEEEEe
Q 047171 482 SAL----DAESERIVQEALDQAS--QGRTMIIIAHRLSTIRK-ADLIGVLQ 525 (1224)
Q Consensus 482 s~l----D~~~~~~i~~~l~~~~--~~~t~i~i~H~l~~~~~-ad~i~vl~ 525 (1224)
+++ |+...+.+.+.++++. .|.|+|+|||+++.+.. ||+|++|.
T Consensus 152 ~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~~~~~~~d~i~~l~ 202 (207)
T 1znw_A 152 IGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLESACAELVSLLVGT 202 (207)
T ss_dssp HTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHHHHHHHHHHHHC--
T ss_pred HhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHHHHHHHHHHHHHhc
Confidence 998 6778888998888764 48999999999999876 99999984
No 163
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.71 E-value=1.8e-20 Score=218.25 Aligned_cols=166 Identities=22% Similarity=0.271 Sum_probs=136.6
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCCCCC-CcEEEECCEecCCCCHHHHhcccEEecC-----CCCCCcccHHHHHhcCC
Q 047171 342 DTPTIGLVGSSGSGKSTVISLLERFYDPV-KGNILLDGHKIKKLQLKWLRSQMGLVNQ-----EPILFSTSIKENILIGK 415 (1224)
Q Consensus 342 ~~~~~~ivG~sGsGKSTl~~ll~~~~~~~-~G~i~~~g~~~~~~~~~~~r~~i~~v~Q-----~~~lf~~ti~~ni~~g~ 415 (1224)
++..++|+|||||||||++++|+|+++|+ +|+|.+.|.++. + .+++.+++|+| ++..|+.++++|++. .
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e-~---~~~~~~~~v~Q~~~g~~~~~~~~~l~~~L~~-~ 209 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIE-Y---VFKHKKSIVNQREVGEDTKSFADALRAALRE-D 209 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCC-S---CCCCSSSEEEEEEBTTTBSCSHHHHHHHTTS-C
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHh-h---hhccCceEEEeeecCCCHHHHHHHHHHHhhh-C
Confidence 34589999999999999999999999998 899987776653 2 35778999999 888999999999997 4
Q ss_pred CCC-------CHHHHHHHHHHhcH-----------------HHHH------------HhccccccccccCCCCCCChHHH
Q 047171 416 PGA-------SMETVVKAAQAANV-----------------HDFI------------MKLNDGYETKVGQFGVQLSGGQK 459 (1224)
Q Consensus 416 ~~~-------~~~~~~~~~~~~~~-----------------~~~i------------~~l~~g~~t~~~~~g~~LSgGq~ 459 (1224)
|+. +.+.+..+++.++. +..+ ..++.++++.+++++..+|||
T Consensus 210 pd~illdE~~d~e~~~~~l~~~~~g~~vi~t~H~~~~~~~~~rl~~l~~~~~~~~~~~~l~~~l~~vv~qrl~~~~~G-- 287 (372)
T 2ewv_A 210 PDVIFVGEMRDLETVETALRAAETGHLVFGTLHTNTAIDTIHRIVDIFPLNQQEQVRIVLSFILQGIISQRLLPKIGG-- 287 (372)
T ss_dssp CSEEEESCCCSHHHHHHHHHHHTTTCEEEECCCCCSHHHHHHHHHHTSCTTSHHHHHHHHHHSCCEEEEEEEEECSSS--
T ss_pred cCEEEECCCCCHHHHHHHHHHHhcCCEEEEEECcchHHHHHHHHHHhcCcccchhHHHHHHHhhhEEEEEEeEecCCC--
Confidence 554 66666666665542 1211 224678999999999999999
Q ss_pred HHHHHHHHhccCCCE--EEEeCCCCCCCHH----H-----HHHHHHHHHHHcCCCeEEEEeCCcch
Q 047171 460 QRIAIARALIRDPKI--LLLDEATSALDAE----S-----ERIVQEALDQASQGRTMIIIAHRLST 514 (1224)
Q Consensus 460 qriaiARal~~~~~i--lilDE~ts~lD~~----~-----~~~i~~~l~~~~~~~t~i~i~H~l~~ 514 (1224)
||++|||+++.+|+| +|+||+|++||.. + +...+++++...+|+|.+.++||++.
T Consensus 288 ~R~~i~e~l~~~~~i~~li~d~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~t~~~~a~r~~~ 353 (372)
T 2ewv_A 288 GRVLAYELLIPNTAIRNLIRENKLQQVYSLMQSGQAETGMQTMNQTLYKLYKQGLITLEDAMEASP 353 (372)
T ss_dssp SEEEEEEECCCCSHHHHHHHHTCHHHHHHHCC-------CBCSHHHHHHTTTTSSSCTTTTTSSCS
T ss_pred CEEEEEEEeeCCHHHHHHHHcCCHHHHHHHHHHhHHhcCCccHHHHHHHHHHCCCCCHHHHHHHcC
Confidence 899999999999999 9999999999965 3 34678888888899999999999984
No 164
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.71 E-value=9.9e-20 Score=212.78 Aligned_cols=176 Identities=17% Similarity=0.130 Sum_probs=111.1
Q ss_pred ceeceeEEEeC--CcEEEEEcCCCCChHHHHHHHhcccCCCC----ceEEE----CCccCCCCCHHHHhcceEEEecCCC
Q 047171 995 IFKGLTLKIEA--GKTVALVGQSGSGKSTIIGLIERFYDPQS----GSVMV----DERNIKSYNLRKLRSCIALVSQEPT 1064 (1224)
Q Consensus 995 vL~~isl~I~~--Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~----G~I~i----dG~di~~~~~~~lR~~i~~V~Qdp~ 1064 (1224)
+.+.|+++|++ |+++||+|+||||||||+++|.|+++|++ |+|.+ +|.++ .++..++ ++|++++|++.
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~~~~~-~~~~~~~-~~I~~~~q~~~ 234 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQ-AMQYSDY-PQMALGHQRYI 234 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSSSCTT-SSCTTTH-HHHHHHHHHHH
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcCCCcc-cCChhHH-HHHHHHHHHHH
Confidence 45689999999 99999999999999999999999999999 99987 46666 5566666 56999999999
Q ss_pred CCcccHHHHHccCCCCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHc-cCCCEEEEec-
Q 047171 1065 LFAGTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVL-KNPMILLLDE- 1142 (1224)
Q Consensus 1065 LF~gTIreNl~~~~~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll-~~p~ILlLDE- 1142 (1224)
+|++|+++||.++.....+...+.. |+|++|+..+++++. .+|++++|||
T Consensus 235 ~~~~t~~~nl~~~~~~~~~~~~~~~----------------------------~~~~~~~~~i~~~~~~~~~~lllLdE~ 286 (365)
T 1lw7_A 235 DYAVRHSHKIAFIDTDFITTQAFCI----------------------------QYEGKAHPFLDSMIKEYPFDVTILLKN 286 (365)
T ss_dssp HHHHHHCSSEEEESSCHHHHHHHHH----------------------------HHHSCCCHHHHHHHHHSCCSEEEEEEC
T ss_pred HHHHhccCCEEEEeCCchHHHHHHH----------------------------HHcCCCCHHHHHHHhhcCCCEEEECCC
Confidence 9999999999987543323333222 233344444444443 2555555555
Q ss_pred --cC------CCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhhcCEEEEEeCCEEEEecChhHHh
Q 047171 1143 --AT------SALDSASENLVQEALEKMMV--GRTCVVVAHRLSTIQKADNIVVIKNGKVVEQGTQSSLL 1202 (1224)
Q Consensus 1143 --aT------SaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~aD~I~vl~~G~Ive~Gt~~eLl 1202 (1224)
|+ +++|......+.+.|.+..+ +.|+|+++|--..-+.+|++.++++ +++.|+.+||.
T Consensus 287 ~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~~~~~r~~~~i~~i~~--~l~~~~~~~~~ 354 (365)
T 1lw7_A 287 NTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESPSYLDRYNQVKAVIEK--VLNEEEISELQ 354 (365)
T ss_dssp CCC-----------CCSHHHHHHHHHHHHHGGGCCCEEEECSSHHHHHHHHHHHHHH--HTSCCCCSSCC
T ss_pred CCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH--HhcccchhHhh
Confidence 32 34555555555555544332 4455555543222222444444432 34455555553
No 165
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.71 E-value=1.7e-20 Score=207.52 Aligned_cols=165 Identities=22% Similarity=0.268 Sum_probs=133.0
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCCCCC-CcEEEECCEecCCCCHHHHhcccEEecC-----CCCCCcccHHHHHhcCC
Q 047171 342 DTPTIGLVGSSGSGKSTVISLLERFYDPV-KGNILLDGHKIKKLQLKWLRSQMGLVNQ-----EPILFSTSIKENILIGK 415 (1224)
Q Consensus 342 ~~~~~~ivG~sGsGKSTl~~ll~~~~~~~-~G~i~~~g~~~~~~~~~~~r~~i~~v~Q-----~~~lf~~ti~~ni~~g~ 415 (1224)
++..++|+|||||||||++++|+|+++|+ +|+|.++|.++..+. +..+++++| ++..|..+++.+++. +
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~----~~~~~~v~q~~~gl~~~~l~~~la~aL~~-~ 98 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVF----KHKKSIVNQREVGEDTKSFADALRAALRE-D 98 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCC----CCSSSEEEEEEBTTTBSCHHHHHHHHHHH-C
T ss_pred CCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeec----CCcceeeeHHHhCCCHHHHHHHHHHHHhh-C
Confidence 46699999999999999999999999998 999999998875442 345678888 666677899999887 3
Q ss_pred CCC-------CHHHHHHHHHHhc-----------------HHHHH------------HhccccccccccCCCCCCChHHH
Q 047171 416 PGA-------SMETVVKAAQAAN-----------------VHDFI------------MKLNDGYETKVGQFGVQLSGGQK 459 (1224)
Q Consensus 416 ~~~-------~~~~~~~~~~~~~-----------------~~~~i------------~~l~~g~~t~~~~~g~~LSgGq~ 459 (1224)
|+. +.+.+..+++.+. ++..+ ..+++++++.+++++..+|||
T Consensus 99 p~illlDEp~D~~~~~~~l~~~~~g~~vl~t~H~~~~~~~~dri~~l~~~~~~~~~~~~l~~~l~~vi~qrl~~~~~G-- 176 (261)
T 2eyu_A 99 PDVIFVGEMRDLETVETALRAAETGHLVFGTLHTNTAIDTIHRIVDIFPLNQQEQVRIVLSFILQGIISQRLLPKIGG-- 176 (261)
T ss_dssp CSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSHHHHHHHHHHTSCGGGHHHHHHHHHHHEEEEEEEEEECCSSS--
T ss_pred CCEEEeCCCCCHHHHHHHHHHHccCCEEEEEeCcchHHHHHHHHhhhcCccccchHHHHHHHHhhEEEEEEeEecCCC--
Confidence 433 5555554444332 11111 235678999999999999999
Q ss_pred HHHHHHHHhccCCCE--EEEeCCCCCCCHHH---------HHHHHHHHHHHcCCCeEEEEeCCcc
Q 047171 460 QRIAIARALIRDPKI--LLLDEATSALDAES---------ERIVQEALDQASQGRTMIIIAHRLS 513 (1224)
Q Consensus 460 qriaiARal~~~~~i--lilDE~ts~lD~~~---------~~~i~~~l~~~~~~~t~i~i~H~l~ 513 (1224)
||+++||+++.+|+| +|+||+|+++|... +..++++++...+|+|.+.++||++
T Consensus 177 ~R~~i~e~l~~~~~i~~li~d~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~t~~~~a~r~~ 241 (261)
T 2eyu_A 177 GRVLAYGLLIPNTAIRNLIRENKLQQVYSLMQSGQAETGMQTMNQTLYKLYKQGLITLEDAMEAS 241 (261)
T ss_dssp SSEEEEEEECCCHHHHHHHHHTCHHHHHHHHHHSCSCTTEECHHHHHHHHHHTTSSCHHHHHHHC
T ss_pred CEEEEEEEecCCHHHHHHHHcCCHHHHHHHHHHhHHhcCCccHHHHHHHHHHcCCCCHHHHHHHh
Confidence 999999999999999 99999999999873 4568888888899999999999986
No 166
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.70 E-value=4.7e-17 Score=163.04 Aligned_cols=88 Identities=24% Similarity=0.285 Sum_probs=75.4
Q ss_pred cccccc-----cCCCCCCChHHHHHHHHH------HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEe
Q 047171 442 GYETKV-----GQFGVQLSGGQKQRIAIA------RALIRDPKILLLDEATSALDAESERIVQEALDQAS-QGRTMIIIA 509 (1224)
Q Consensus 442 g~~t~~-----~~~g~~LSgGq~qriaiA------Ral~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~i~ 509 (1224)
++++.+ ...+.+||||||||++|| ||++.+|+++||||||++||+++...+.+.+.++. +|+|+|+||
T Consensus 41 ~~~l~~~~~~~~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivs 120 (148)
T 1f2t_B 41 KVRLFVVWEGKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVS 120 (148)
T ss_dssp SEEEEEEETTEEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEE
T ss_pred ceEEEeccccccCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEE
Confidence 565554 456789999999999876 99999999999999999999999999999998864 589999999
Q ss_pred CCcchhhccCEEEEE--eCceE
Q 047171 510 HRLSTIRKADLIGVL--QSGRV 529 (1224)
Q Consensus 510 H~l~~~~~ad~i~vl--~~G~i 529 (1224)
|+.+....||++++| ++|..
T Consensus 121 H~~~~~~~~d~ii~l~~~~g~s 142 (148)
T 1f2t_B 121 HDEELKDAADHVIRISLENGSS 142 (148)
T ss_dssp SCGGGGGGCSEEEEEEEETTEE
T ss_pred ChHHHHHhCCEEEEEEcCCCeE
Confidence 999655669999999 45643
No 167
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.69 E-value=1.6e-19 Score=194.24 Aligned_cols=140 Identities=13% Similarity=0.113 Sum_probs=108.4
Q ss_pred EeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcceEEEecCCCCCcc---cHHHHHccC--
Q 047171 1003 IEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIALVSQEPTLFAG---TIRQNIVYG-- 1077 (1224)
Q Consensus 1003 I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qdp~LF~g---TIreNl~~~-- 1077 (1224)
.++|+++||+|+||||||||+++|.|++.| ++++|+||+.+++. |+++|+.+.
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~----------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~~ 60 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE----------------------RVALLPMDHYYKDLGHLPLEERLRVNYD 60 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG----------------------GEEEEEGGGCBCCCTTSCHHHHHHSCTT
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC----------------------CeEEEecCccccCcccccHHHhcCCCCC
Confidence 578999999999999999999999999875 59999999998843 677776543
Q ss_pred CC-CCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHH----HHHHHHHHHHccCCCEEEEeccCCC------
Q 047171 1078 KE-VATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQ----KQRIALARAVLKNPMILLLDEATSA------ 1146 (1224)
Q Consensus 1078 ~~-~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQ----rQRlaLARAll~~p~ILlLDEaTSa------ 1146 (1224)
.+ ..+.+.+.++++..++.+.+ ...+..+|+|| +||+++||+++.+|+++++||||++
T Consensus 61 ~~~~~~~~~~~~~l~~~~~~~~~-----------~~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i 129 (211)
T 3asz_A 61 HPDAFDLALYLEHAQALLRGLPV-----------EMPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKV 129 (211)
T ss_dssp SGGGBCHHHHHHHHHHHHTTCCE-----------EECCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEE
T ss_pred ChhhhhHHHHHHHHHHHHcCCCc-----------CCCcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEE
Confidence 22 22445666666555443322 12244577775 5799999999999999999999999
Q ss_pred -CCHHHHHHHHHHHHHhc--CCCeEEEEccCc
Q 047171 1147 -LDSASENLVQEALEKMM--VGRTCVVVAHRL 1175 (1224)
Q Consensus 1147 -LD~~te~~I~~~l~~~~--~~~TvI~IaHrl 1175 (1224)
||+.++..+++.+.+.. +|+|++.++|+.
T Consensus 130 ~ld~~~~~~~~r~l~r~~~~~g~t~~~~~~~~ 161 (211)
T 3asz_A 130 FVDADADERFIRRLKRDVLERGRSLEGVVAQY 161 (211)
T ss_dssp EEECCHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred EEeCCHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 99999999999987653 588999999984
No 168
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.69 E-value=1.9e-18 Score=199.56 Aligned_cols=166 Identities=17% Similarity=0.191 Sum_probs=119.8
Q ss_pred ceece-eEEEeCCcEEEEEcCCCCChHHHHHHHhccc--CCCC----ce-EEECCccCCCCCHHHHhcceEEEecCCCCC
Q 047171 995 IFKGL-TLKIEAGKTVALVGQSGSGKSTIIGLIERFY--DPQS----GS-VMVDERNIKSYNLRKLRSCIALVSQEPTLF 1066 (1224)
Q Consensus 995 vL~~i-sl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~--~p~~----G~-I~idG~di~~~~~~~lR~~i~~V~Qdp~LF 1066 (1224)
.|+++ ++.|++|+.++|+||+|||||||++.+++.+ +|++ |+ |+||+.+.. .++++++++|++.++
T Consensus 119 ~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~------~~~~i~~i~q~~~~~ 192 (349)
T 1pzn_A 119 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF------RPERIREIAQNRGLD 192 (349)
T ss_dssp HHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC------CHHHHHHHHHTTTCC
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC------CHHHHHHHHHHcCCC
Confidence 46665 6899999999999999999999999999998 6666 67 999998752 256788999999998
Q ss_pred cccHHHHHccCCCCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHc-------cCCCEEE
Q 047171 1067 AGTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVL-------KNPMILL 1139 (1224)
Q Consensus 1067 ~gTIreNl~~~~~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll-------~~p~ILl 1139 (1224)
..++.+||.+.... + |++|+|++.++++++ .+|++||
T Consensus 193 ~~~v~~ni~~~~~~-~-----------------------------------~~~~~~~l~~~~~~~~~lS~G~~~~~llI 236 (349)
T 1pzn_A 193 PDEVLKHIYVARAF-N-----------------------------------SNHQMLLVQQAEDKIKELLNTDRPVKLLI 236 (349)
T ss_dssp HHHHGGGEEEEECC-S-----------------------------------HHHHHHHHHHHHHHHHHSSSSSSCEEEEE
T ss_pred HHHHhhCEEEEecC-C-----------------------------------hHHHHHHHHHHHHHHHHhccccCCCCEEE
Confidence 88999999876421 1 345666666666666 6899999
Q ss_pred EeccCCCCCHHH------------HHHHHHHHHHhc--CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChhHHh
Q 047171 1140 LDEATSALDSAS------------ENLVQEALEKMM--VGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSLL 1202 (1224)
Q Consensus 1140 LDEaTSaLD~~t------------e~~I~~~l~~~~--~~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~Gt~~eLl 1202 (1224)
+||||+.+|++. -..+.+.|.++. .++|||+++|....... ++.+.+...|++++++++..|.
T Consensus 237 lDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~~~~~~~~~~~~~~~G~~l~~~~~~rL~ 314 (349)
T 1pzn_A 237 VDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQARPDAFFGDPTRPIGGHILAHSATLRVY 314 (349)
T ss_dssp EETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC---------------CCCCCTTCSEEEE
T ss_pred EeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEcccccccccccCCccccCCcceEeecCcEEEE
Confidence 999999999863 133334444433 38899999998876543 4556778889999998887775
No 169
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.69 E-value=5.5e-17 Score=162.55 Aligned_cols=87 Identities=24% Similarity=0.337 Sum_probs=74.8
Q ss_pred cccccc-----CCCCCCCChHHHHHHHHH------HHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEc
Q 047171 1105 GYDTYC-----GERGVQLSGGQKQRIALA------RAVLKNPMILLLDEATSALDSASENLVQEALEKMM-VGRTCVVVA 1172 (1224)
Q Consensus 1105 gldt~v-----ge~G~~LSGGQrQRlaLA------RAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~Ia 1172 (1224)
+|+..+ .....+||||||||++|| ||++++|++|||||||++||+++.+.+.+.|+++. +++|+|+||
T Consensus 41 ~~~l~~~~~~~~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivs 120 (148)
T 1f2t_B 41 KVRLFVVWEGKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVS 120 (148)
T ss_dssp SEEEEEEETTEEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEE
T ss_pred ceEEEeccccccCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEE
Confidence 566654 244578999999999876 99999999999999999999999999999999875 478999999
Q ss_pred cCchhhhhcCEEEEE--eCCE
Q 047171 1173 HRLSTIQKADNIVVI--KNGK 1191 (1224)
Q Consensus 1173 Hrl~ti~~aD~I~vl--~~G~ 1191 (1224)
|+++....||+|++| ++|.
T Consensus 121 H~~~~~~~~d~ii~l~~~~g~ 141 (148)
T 1f2t_B 121 HDEELKDAADHVIRISLENGS 141 (148)
T ss_dssp SCGGGGGGCSEEEEEEEETTE
T ss_pred ChHHHHHhCCEEEEEEcCCCe
Confidence 999666669999999 4564
No 170
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=99.68 E-value=3e-20 Score=197.64 Aligned_cols=156 Identities=17% Similarity=0.220 Sum_probs=122.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcCCC-------------CCCcEEEECCEecCCCCHHHHhcccEEecCCCCCCcccHHH
Q 047171 343 TPTIGLVGSSGSGKSTVISLLERFYD-------------PVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFSTSIKE 409 (1224)
Q Consensus 343 ~~~~~ivG~sGsGKSTl~~ll~~~~~-------------~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ 409 (1224)
+..++|+||||||||||+++|+|+++ |..|+ ++|.++...+.+.+++.+ +|++++|++++.+
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~--~~g~~~~~~~~~~~~~~i---~~~~~l~~~~~~~ 78 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGE--EDGKDYYFVTREMMQRDI---AAGDFIEHAEFSG 78 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTC--CBTTTBEECCHHHHHHHH---HHTCEEEEEEETT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcc--cCCceEEEccHHHHHHHH---HcCCCEeeeeecC
Confidence 56899999999999999999999986 78897 589998888999998876 7999999999999
Q ss_pred HHhcCCCCCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHH-HhccCCCEEEEeCCCCCCCHHH
Q 047171 410 NILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIAR-ALIRDPKILLLDEATSALDAES 488 (1224)
Q Consensus 410 ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiAR-al~~~~~ililDE~ts~lD~~~ 488 (1224)
|+ +|. +.+++.++++...+.- ....|+|+++.... ++ .|| +++.+|++++|||+|+++|.++
T Consensus 79 n~-~g~---~~~~i~~~~~~~~~~~-~~~~~~g~~~~~~~-----------~~-~~~~~~l~~p~~~ilde~~~~~d~~~ 141 (198)
T 1lvg_A 79 NL-YGT---SKEAVRAVQAMNRICV-LDVDLQGVRSIKKT-----------DL-CPIYIFVQPPSLDVLEQRLRLRNTET 141 (198)
T ss_dssp EE-EEE---EHHHHHHHHHTTCEEE-EECCHHHHHHHTTS-----------SC-CCEEEEEECSCHHHHHHHHHHHTCSC
T ss_pred cc-CCC---CHHHHHHHHHcCCcEE-EECCHHHHHHHHhc-----------CC-CcEEEEEeCCCHHHHHHHHHhcCCCC
Confidence 98 774 4667777776432110 11235566665432 12 577 8999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCeEEEEeCCcchhhccCEEEEEeC
Q 047171 489 ERIVQEALDQASQGRTMIIIAHRLSTIRKADLIGVLQS 526 (1224)
Q Consensus 489 ~~~i~~~l~~~~~~~t~i~i~H~l~~~~~ad~i~vl~~ 526 (1224)
++.|++.|....++ +.++| ++ ..+|+|+|+++
T Consensus 142 e~~i~~~l~~~~~~---~~~a~--~~-~~~D~iivnd~ 173 (198)
T 1lvg_A 142 EESLAKRLAAARTD---MESSK--EP-GLFDLVIINDD 173 (198)
T ss_dssp HHHHHHHHHHHHHH---TTGGG--ST-TTCSEEEECSS
T ss_pred HHHHHHHHHHHHHH---HHHhh--cc-CCceEEEECCC
Confidence 99999999876544 35677 44 77999998875
No 171
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.66 E-value=2.5e-17 Score=206.60 Aligned_cols=147 Identities=18% Similarity=0.193 Sum_probs=114.2
Q ss_pred cccEEEEEEEEECCCC--CCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccC-CCCceEEECCccCCCCCHHH
Q 047171 975 KGFIELKNVFFSYPSR--PDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYD-PQSGSVMVDERNIKSYNLRK 1051 (1224)
Q Consensus 975 ~g~I~~~~vsf~Y~~~--~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~-p~~G~I~idG~di~~~~~~~ 1051 (1224)
.+.|++++. ++|-- .+..+++|+||+ |+.++|+|||||||||+++++.|+.. ++.|.+. + .
T Consensus 548 ~~~i~i~~~--rHP~le~~~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~v----p-------a 611 (765)
T 1ewq_A 548 GDRLQIRAG--RHPVVERRTEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSFV----P-------A 611 (765)
T ss_dssp SSSEEEEEE--CCTTGGGTSCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCB----S-------S
T ss_pred CCcEEEEEe--ECceEccCCceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCcee----e-------h
Confidence 346899888 56531 235799999999 99999999999999999999999874 6778752 1 1
Q ss_pred HhcceEEEecCCCCCc-ccHHHHHccCCCCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHH
Q 047171 1052 LRSCIALVSQEPTLFA-GTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARA 1130 (1224)
Q Consensus 1052 lR~~i~~V~Qdp~LF~-gTIreNl~~~~~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARA 1130 (1224)
.+.++++++| +|. .++.||+.. .+|+|++|++.+|++
T Consensus 612 ~~~~i~~v~~---i~~~~~~~d~l~~---------------------------------------g~S~~~~e~~~la~i 649 (765)
T 1ewq_A 612 EEAHLPLFDG---IYTRIGASDDLAG---------------------------------------GKSTFMVEMEEVALI 649 (765)
T ss_dssp SEEEECCCSE---EEEECCC---------------------------------------------CCSHHHHHHHHHHHH
T ss_pred hccceeeHHH---hhccCCHHHHHHh---------------------------------------cccHHHHHHHHHHHH
Confidence 2456888887 454 366666532 258999999999999
Q ss_pred H--ccCCCEEEEecc---CCCCCHHHH-HHHHHHHHHhcCCCeEEEEccCchhhhhc
Q 047171 1131 V--LKNPMILLLDEA---TSALDSASE-NLVQEALEKMMVGRTCVVVAHRLSTIQKA 1181 (1224)
Q Consensus 1131 l--l~~p~ILlLDEa---TSaLD~~te-~~I~~~l~~~~~~~TvI~IaHrl~ti~~a 1181 (1224)
+ +.+|+++||||| ||++|..+. ..+.+.|.+ .++|+|++||+.+....|
T Consensus 650 l~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~--~g~~vl~~TH~~~l~~~~ 704 (765)
T 1ewq_A 650 LKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE--RRAYTLFATHYFELTALG 704 (765)
T ss_dssp HHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH--HTCEEEEECCCHHHHTCC
T ss_pred HHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHh--CCCEEEEEeCCHHHHHhh
Confidence 9 999999999999 999999875 578888876 589999999998876544
No 172
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.66 E-value=2.2e-16 Score=188.60 Aligned_cols=73 Identities=25% Similarity=0.328 Sum_probs=67.6
Q ss_pred CCChHHHHHHHHHHHHc----cCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC-CCeEEEEccCchhhhhcCEEEEEe
Q 047171 1116 QLSGGQKQRIALARAVL----KNPMILLLDEATSALDSASENLVQEALEKMMV-GRTCVVVAHRLSTIQKADNIVVIK 1188 (1224)
Q Consensus 1116 ~LSGGQrQRlaLARAll----~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~-~~TvI~IaHrl~ti~~aD~I~vl~ 1188 (1224)
.||||||||++|||+|. ++|++|||||||++||+.....+.+.|++... +.++|+|||+...+..||+++++.
T Consensus 333 ~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~~~~~~~d~~~~~~ 410 (430)
T 1w1w_A 333 YLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDALVGVY 410 (430)
T ss_dssp GSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTTCSEEEEEE
T ss_pred cCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEEE
Confidence 49999999999999999 68999999999999999999999999988753 689999999988888899999985
No 173
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.66 E-value=1e-16 Score=204.31 Aligned_cols=167 Identities=18% Similarity=0.165 Sum_probs=118.2
Q ss_pred ccEEEEEEEEECCCC--CCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHH--------hcccCCCCceEEECCccCC
Q 047171 976 GFIELKNVFFSYPSR--PDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLI--------ERFYDPQSGSVMVDERNIK 1045 (1224)
Q Consensus 976 g~I~~~~vsf~Y~~~--~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL--------~rl~~p~~G~I~idG~di~ 1045 (1224)
+.|++++..--+-.. .+..|++|++|++++|+.++|+|||||||||+++.+ .|.+-|.++..
T Consensus 630 ~~i~i~~~rHP~le~~~~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~-------- 701 (934)
T 3thx_A 630 GRIILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAE-------- 701 (934)
T ss_dssp CEEEEEEECCTTTTTC--CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEE--------
T ss_pred cceEeecCccchhhhcCCceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccccccc--------
Confidence 468888764333221 134689999999999999999999999999999999 55544443221
Q ss_pred CCCHHHHhcceEEEecCCCCCcccHHHHHccCCCCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHH
Q 047171 1046 SYNLRKLRSCIALVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRI 1125 (1224)
Q Consensus 1046 ~~~~~~lR~~i~~V~Qdp~LF~gTIreNl~~~~~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRl 1125 (1224)
++++. .+|. .++ +.+.+ ...+|+|++++.
T Consensus 702 ----------~~~~d---~i~~-------~ig-----------------~~d~l--------------~~~lStf~~e~~ 730 (934)
T 3thx_A 702 ----------VSIVD---CILA-------RVG-----------------AGDSQ--------------LKGVSTFMAEML 730 (934)
T ss_dssp ----------EECCS---EEEE-------ECC----------------------------------------CHHHHHHH
T ss_pred ----------chHHH---HHHH-------hcC-----------------chhhH--------------HHhHhhhHHHHH
Confidence 11000 0110 011 00100 124788888888
Q ss_pred HHHHHH--ccCCCEEEEeccCCCCCHHHHHHH-HHHHHHhc--CCCeEEEEccCchhhhhcCEEEEEeCCEEEEecChhH
Q 047171 1126 ALARAV--LKNPMILLLDEATSALDSASENLV-QEALEKMM--VGRTCVVVAHRLSTIQKADNIVVIKNGKVVEQGTQSS 1200 (1224)
Q Consensus 1126 aLARAl--l~~p~ILlLDEaTSaLD~~te~~I-~~~l~~~~--~~~TvI~IaHrl~ti~~aD~I~vl~~G~Ive~Gt~~e 1200 (1224)
.+|+++ +.+|+++||||||+++|+.....+ +..++.+. .++|+|++||..+....||++..+++|++...+++++
T Consensus 731 ~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el~~lad~~~~v~ng~v~~~~~~~~ 810 (934)
T 3thx_A 731 ETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTALANQIPTVNNLHVTALTTEET 810 (934)
T ss_dssp HHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGGGGGGGTCTTEEEEEEEEEEETTE
T ss_pred HHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHHHHHhcccceeEeeEEEEEecCCc
Confidence 888888 999999999999999999877766 55555554 3899999999988888899999999999998877666
Q ss_pred H
Q 047171 1201 L 1201 (1224)
Q Consensus 1201 L 1201 (1224)
+
T Consensus 811 l 811 (934)
T 3thx_A 811 L 811 (934)
T ss_dssp E
T ss_pred E
Confidence 5
No 174
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.66 E-value=1e-18 Score=202.97 Aligned_cols=148 Identities=14% Similarity=0.093 Sum_probs=117.8
Q ss_pred EEEEEEEE---CCCCCCccce---------eceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCC
Q 047171 979 ELKNVFFS---YPSRPDQMIF---------KGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKS 1046 (1224)
Q Consensus 979 ~~~~vsf~---Y~~~~~~~vL---------~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~ 1046 (1224)
+|+||+|+ |++. +.++| +++||+|++|+.++|+||||||||||+++|.|+++|++|.|.++|. .+
T Consensus 137 ~f~~v~f~~~~Y~~~-~~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~--~e 213 (361)
T 2gza_A 137 FFKHVRPMSKSLTPF-EQELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDV--PE 213 (361)
T ss_dssp TTSCCCCSCSCCCHH-HHHHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESS--SC
T ss_pred CcCccccccccccch-hHHHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCc--cc
Confidence 89999999 8632 23466 9999999999999999999999999999999999999999999985 45
Q ss_pred CCHHHHhcceEEEe-cCCCC---CcccHHHHHccCCCCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHH
Q 047171 1047 YNLRKLRSCIALVS-QEPTL---FAGTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQK 1122 (1224)
Q Consensus 1047 ~~~~~lR~~i~~V~-Qdp~L---F~gTIreNl~~~~~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQr 1122 (1224)
+.+..+|+++++++ |++.+ +..|+++||..+....+|..+..+++.+.+++++..+|.|++|.+++.+.+-..+..
T Consensus 214 ~~~~~~~~~v~~v~~q~~~~~~~~~~t~~~~i~~~l~~~pd~~l~~e~r~~~~~~~l~~l~~g~~~~l~t~H~~~~~~~~ 293 (361)
T 2gza_A 214 LFLPDHPNHVHLFYPSEAKEEENAPVTAATLLRSCLRMKPTRILLAELRGGEAYDFINVAASGHGGSITSCHAGSCELTF 293 (361)
T ss_dssp CCCTTCSSEEEEECC----------CCHHHHHHHHTTSCCSEEEESCCCSTHHHHHHHHHHTTCCSCEEEEECSSHHHHH
T ss_pred cCccccCCEEEEeecCccccccccccCHHHHHHHHHhcCCCEEEEcCchHHHHHHHHHHHhcCCCeEEEEECCCCHHHHH
Confidence 66666788999999 99886 788999999877554444444444445667889999999999999988888788999
Q ss_pred HHHHHHH
Q 047171 1123 QRIALAR 1129 (1224)
Q Consensus 1123 QRlaLAR 1129 (1224)
+|+....
T Consensus 294 ~Rl~~l~ 300 (361)
T 2gza_A 294 ERLALMV 300 (361)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9997764
No 175
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.65 E-value=5.5e-17 Score=176.81 Aligned_cols=147 Identities=18% Similarity=0.234 Sum_probs=102.8
Q ss_pred EEeCCcEEEEEcCCCCChHHHHHHHhcccCC-------CCceEEECCccCCCCCHHHHhcceEEEecCCCCCcccHHHHH
Q 047171 1002 KIEAGKTVALVGQSGSGKSTIIGLIERFYDP-------QSGSVMVDERNIKSYNLRKLRSCIALVSQEPTLFAGTIRQNI 1074 (1224)
Q Consensus 1002 ~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p-------~~G~I~idG~di~~~~~~~lR~~i~~V~Qdp~LF~gTIreNl 1074 (1224)
.|++||.++|+||||||||||++.|+|.+.| ..|.+++++.+. .+ ++++++++|+..++..|+.+|+
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~--~~----~~~i~~~~~~~~~~~~~~~~~~ 94 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT--FR----PERIREIAQNRGLDPDEVLKHI 94 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC--CC----HHHHHHHHHHTTSCHHHHHHTE
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCC--CC----HHHHHHHHHHcCCCHHHHhhcE
Confidence 6999999999999999999999999997665 445888888653 11 2357778888888877999998
Q ss_pred ccCCCCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHH-------ccCCCEEEEeccCCCC
Q 047171 1075 VYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAV-------LKNPMILLLDEATSAL 1147 (1224)
Q Consensus 1075 ~~~~~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAl-------l~~p~ILlLDEaTSaL 1147 (1224)
.+.... +..+ |++.+..++++ ..+|++|+|||||+.+
T Consensus 95 ~~~~~~-~~~~-----------------------------------~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l 138 (231)
T 4a74_A 95 YVARAF-NSNH-----------------------------------QMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHF 138 (231)
T ss_dssp EEEECC-SHHH-----------------------------------HHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHH
T ss_pred EEEecC-ChHH-----------------------------------HHHHHHHHHHHHHHhcccCCceeEEEECChHHHh
Confidence 876432 2111 11122222222 3489999999999999
Q ss_pred CHH-------HH-----HHHHHHHHHhc--CCCeEEEEccCch----hhhh-cCEEEEEeCC
Q 047171 1148 DSA-------SE-----NLVQEALEKMM--VGRTCVVVAHRLS----TIQK-ADNIVVIKNG 1190 (1224)
Q Consensus 1148 D~~-------te-----~~I~~~l~~~~--~~~TvI~IaHrl~----ti~~-aD~I~vl~~G 1190 (1224)
|++ .+ ..+.+.|.+.. .++|+|+|+|..+ .+.. ||++++|++|
T Consensus 139 ~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~ 200 (231)
T 4a74_A 139 RSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKG 200 (231)
T ss_dssp HHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEEC
T ss_pred ccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEec
Confidence 984 22 24555555443 3899999999444 4766 9999999875
No 176
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.65 E-value=6.7e-18 Score=186.62 Aligned_cols=180 Identities=15% Similarity=0.123 Sum_probs=110.9
Q ss_pred EEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHh--cccCCCCceEEECCccCCCCCHHHHhcc
Q 047171 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIE--RFYDPQSGSVMVDERNIKSYNLRKLRSC 1055 (1224)
Q Consensus 978 I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~--rl~~p~~G~I~idG~di~~~~~~~lR~~ 1055 (1224)
+++++++..|+.- + .+|.+ .|++||.++|+||||||||||+++|+ ++.++.+|.+.+++.+... .....+++
T Consensus 7 ~~~~~i~tg~~~l-D-~~l~G---gi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 80 (251)
T 2ehv_A 7 QPVRRVKSGIPGF-D-ELIEG---GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERAR-DLRREMAS 80 (251)
T ss_dssp -CCCEECCSCTTT-G-GGTTT---SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHH-HHHHHHHT
T ss_pred cccceeecCCHhH-H-HHhcC---CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCCHH-HHHHHHHH
Confidence 4556666656421 1 13333 79999999999999999999999999 7756778888888754321 22334567
Q ss_pred eEEEecCCCCCc-ccHHHHHccCCCCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHccC
Q 047171 1056 IALVSQEPTLFA-GTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKN 1134 (1224)
Q Consensus 1056 i~~V~Qdp~LF~-gTIreNl~~~~~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll~~ 1134 (1224)
+++++|++..+. -++.++....... ...+... .. ...+-++.+....+..-..+
T Consensus 81 ~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--------------------~~----~~~~~~~~~~~~~~~l~~~~ 135 (251)
T 2ehv_A 81 FGWDFEKYEKEGKIAIVDGVSSVVGL-PSEEKFV--------------------LE----DRFNVDNFLRYIYRVVKAIN 135 (251)
T ss_dssp TTCCHHHHHHTTSEEEEC--------------------------------------------CCHHHHHHHHHHHHHHTT
T ss_pred cCCChHHHhhcCCEEEEEcccccccc-cccccee--------------------cc----CcccHHHHHHHHHHHHHhhC
Confidence 888888764322 2333322211000 0000000 00 01233444444444444579
Q ss_pred CCEEEEeccCCCCC-----HHHHHHHHHHHHHhc-CCCeEEEEccCchhh----------hhc-CEEEEEe
Q 047171 1135 PMILLLDEATSALD-----SASENLVQEALEKMM-VGRTCVVVAHRLSTI----------QKA-DNIVVIK 1188 (1224)
Q Consensus 1135 p~ILlLDEaTSaLD-----~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti----------~~a-D~I~vl~ 1188 (1224)
|++|+|||||+.+| ....+.+.+.++.+. .|+|+|++||.++.+ ..| |+|++|+
T Consensus 136 p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~~g~tii~vtH~~~~~~~~~~~~~i~~~~aD~vi~l~ 206 (251)
T 2ehv_A 136 AKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVLD 206 (251)
T ss_dssp CSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC----CCSSSSSCGGGGCSEEEEEE
T ss_pred CCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEECCCCCCcccccccChhhEeeeEEEEEe
Confidence 99999999999997 666666888777654 489999999999886 347 9999995
No 177
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.65 E-value=1.3e-17 Score=191.57 Aligned_cols=184 Identities=14% Similarity=0.180 Sum_probs=134.1
Q ss_pred cEEEEeEEEECCCC----------CCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCC-------CCHHHH
Q 047171 327 EIEFKDVDFSYPTR----------PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKK-------LQLKWL 389 (1224)
Q Consensus 327 ~i~~~~v~f~y~~~----------~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~-------~~~~~~ 389 (1224)
-++.+++++.|+.. .+|++++|+||||||||||+++|+|+.+|+.|.|.+.|++.++ .....+
T Consensus 45 ~i~~~~l~~~~~tg~~ald~ll~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~ev~~~i~~~~~~~~ 124 (347)
T 2obl_A 45 PLLRQVIDQPFILGVRAIDGLLTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLALLPQSTL 124 (347)
T ss_dssp STTCCCCCSEECCSCHHHHHHSCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHTTSCHHHH
T ss_pred CeeecccceecCCCCEEEEeeeeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHHHHHHHHHhhhhhhh
Confidence 47788999998632 2577999999999999999999999999999999998875321 122334
Q ss_pred hcccEEecCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhcccccccc-ccCCCCCCChHHHHHHHHHHHh
Q 047171 390 RSQMGLVNQEPILFSTSIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETK-VGQFGVQLSGGQKQRIAIARAL 468 (1224)
Q Consensus 390 r~~i~~v~Q~~~lf~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~-~~~~g~~LSgGq~qriaiARal 468 (1224)
++.+.+++|... +. .+++..+.....+.++... .|.+.. +-+...+||+|| ||+++|
T Consensus 125 ~~~v~~~~~~~~----~~------------~~r~~~~~~~~~~ae~~~~--~~~~vl~~ld~~~~lS~g~-r~v~la--- 182 (347)
T 2obl_A 125 SKCVLVVTTSDR----PA------------LERMKAAFTATTIAEYFRD--QGKNVLLMMDSVTRYARAA-RDVGLA--- 182 (347)
T ss_dssp TTEEEEEECTTS----CH------------HHHHHHHHHHHHHHHHHHT--TTCEEEEEEETHHHHHHHH-HHHHHH---
T ss_pred hceEEEEECCCC----CH------------HHHHHHHHHHHHHHHHHHh--ccccHHHHHhhHHHHHHHH-HHHHHH---
Confidence 555666666421 11 2223223333333333322 233211 124567899999 999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc---CCC-----eEEEEeCCcchhhccCEEEEEeCceEEeecChHHHH
Q 047171 469 IRDPKILLLDEATSALDAESERIVQEALDQAS---QGR-----TMIIIAHRLSTIRKADLIGVLQSGRVIESGSHDVLM 539 (1224)
Q Consensus 469 ~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~---~~~-----t~i~i~H~l~~~~~ad~i~vl~~G~i~~~g~~~~l~ 539 (1224)
+.+|++ |+++|+.....+.+.++++. +|. |++++||+++ -.-||++++|.+|+|+.+|+.+++.
T Consensus 183 l~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~-~~i~d~v~~i~dG~Ivl~~~l~~~~ 254 (347)
T 2obl_A 183 SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN-DPIGDEVRSILDGHIVLTRELAEEN 254 (347)
T ss_dssp TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC-CHHHHHHHHHCSEEEEBCHHHHTTT
T ss_pred cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC-ChhhhheEEeeCcEEEEeCCHHHcC
Confidence 588888 99999999999999998875 366 8999999999 4459999999999999988777653
No 178
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.64 E-value=4.3e-17 Score=187.67 Aligned_cols=147 Identities=22% Similarity=0.243 Sum_probs=108.9
Q ss_pred EEEEEECCCCCCccceeceeE-------EEeCCcEEEEEcCCCCChHHHHHHHhcccCCC-CceEEECCccCCCCCHHHH
Q 047171 981 KNVFFSYPSRPDQMIFKGLTL-------KIEAGKTVALVGQSGSGKSTIIGLIERFYDPQ-SGSVMVDERNIKSYNLRKL 1052 (1224)
Q Consensus 981 ~~vsf~Y~~~~~~~vL~~isl-------~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~-~G~I~idG~di~~~~~~~l 1052 (1224)
.+++++|... ..+.|+++.+ .+++|+.++|+|||||||||++++|+|+++|+ +|.|...+.++. +. +
T Consensus 92 ~~~~iR~~~~-~~~~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e-~~---~ 166 (356)
T 3jvv_A 92 AGAVFRTIPS-KVLTMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIE-FV---H 166 (356)
T ss_dssp EEEEEEEECC-SCCCTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCC-SC---C
T ss_pred cEEEEEECCC-CCCCHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHH-hh---h
Confidence 5788888543 3467788877 78899999999999999999999999999987 567665444332 22 2
Q ss_pred hcceEEEecCCCCCcccHHHHHccCCCCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHc
Q 047171 1053 RSCIALVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVL 1132 (1224)
Q Consensus 1053 R~~i~~V~Qdp~LF~gTIreNl~~~~~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll 1132 (1224)
+...++++|.+.-.. ..+-.+ +|||||.
T Consensus 167 ~~~~~~v~q~~~~~~------------~~~~~~----------------------------------------~La~aL~ 194 (356)
T 3jvv_A 167 ESKKCLVNQREVHRD------------TLGFSE----------------------------------------ALRSALR 194 (356)
T ss_dssp CCSSSEEEEEEBTTT------------BSCHHH----------------------------------------HHHHHTT
T ss_pred hccccceeeeeeccc------------cCCHHH----------------------------------------HHHHHhh
Confidence 344566777643211 001110 9999999
Q ss_pred cCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCC
Q 047171 1133 KNPMILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLSTIQKADNIVVIKNG 1190 (1224)
Q Consensus 1133 ~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~aD~I~vl~~G 1190 (1224)
.+|++|++|||| |.++.+.+.++ ...|+|||+++|..+.+..+||+++|..|
T Consensus 195 ~~PdvillDEp~---d~e~~~~~~~~---~~~G~~vl~t~H~~~~~~~~dRli~l~~~ 246 (356)
T 3jvv_A 195 EDPDIILVGEMR---DLETIRLALTA---AETGHLVFGTLHTTSAAKTIDRVVDVFPA 246 (356)
T ss_dssp SCCSEEEESCCC---SHHHHHHHHHH---HHTTCEEEEEESCSSHHHHHHHHHHTSCH
T ss_pred hCcCEEecCCCC---CHHHHHHHHHH---HhcCCEEEEEEccChHHHHHHHHhhhcCc
Confidence 999999999999 77776655554 34599999999999999889999887443
No 179
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.64 E-value=4.9e-16 Score=185.56 Aligned_cols=73 Identities=23% Similarity=0.329 Sum_probs=67.3
Q ss_pred CCChHHHHHHHHHHHhc----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEeCCcchhhccCEEEEEe
Q 047171 453 QLSGGQKQRIAIARALI----RDPKILLLDEATSALDAESERIVQEALDQAS-QGRTMIIIAHRLSTIRKADLIGVLQ 525 (1224)
Q Consensus 453 ~LSgGq~qriaiARal~----~~~~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~i~H~l~~~~~ad~i~vl~ 525 (1224)
.||||||||++||++|+ .+|++|||||||++||+.....+.+.+.+.. ++.++|+|||+...+..||+++++.
T Consensus 333 ~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~~~~~~~d~~~~~~ 410 (430)
T 1w1w_A 333 YLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDALVGVY 410 (430)
T ss_dssp GSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTTCSEEEEEE
T ss_pred cCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEEE
Confidence 49999999999999999 6899999999999999999999999998875 3789999999988888899999986
No 180
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.63 E-value=2.7e-18 Score=212.43 Aligned_cols=190 Identities=20% Similarity=0.276 Sum_probs=122.8
Q ss_pred cEEEEEEEEECCCCCCccceece----------eEEEeCCcEEEEEcCCCCChHHHHHHHhcccCC-CCceEEECCccCC
Q 047171 977 FIELKNVFFSYPSRPDQMIFKGL----------TLKIEAGKTVALVGQSGSGKSTIIGLIERFYDP-QSGSVMVDERNIK 1045 (1224)
Q Consensus 977 ~I~~~~vsf~Y~~~~~~~vL~~i----------sl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p-~~G~I~idG~di~ 1045 (1224)
.++++|+++.|+.. ..++|+.+ +++++. +|||||||||||||+++|.|++.| ++|.|+++|.++.
T Consensus 10 ~i~~~~l~~~~~~~-~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~ 85 (608)
T 3szr_A 10 SVAENNLCSQYEEK-VRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLK 85 (608)
T ss_dssp ----------CHHH-HHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEE
T ss_pred hhhhhhhhHHHHHH-HHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEE
Confidence 58899999999632 23455444 366665 999999999999999999999988 7999999999863
Q ss_pred CC---CHHHHhcceEEEecCCCCCc-ccHHHHHccCCCCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHH
Q 047171 1046 SY---NLRKLRSCIALVSQEPTLFA-GTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQ 1121 (1224)
Q Consensus 1046 ~~---~~~~lR~~i~~V~Qdp~LF~-gTIreNl~~~~~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQ 1121 (1224)
.. ....+|++++|++|++.+++ .||++||.... .. +. + .+..+|
T Consensus 86 ~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~------------~~------~~----~-------~~~~~s--- 133 (608)
T 3szr_A 86 LKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQ------------NA------IA----G-------EGMGIS--- 133 (608)
T ss_dssp EEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHH------------HH------HH----C-------SSSCCC---
T ss_pred EecCCccccceeEEeeecccccCCCHHHHHHHHHHHH------------HH------hc----C-------Cccccc---
Confidence 21 24568899999999998875 58999886421 00 00 0 011122
Q ss_pred HHHHHHHHHHccCCCEEEEecc------CCCCCHHHHHHHHHHHHHhcC---CCeEEEEccCchhh--------hh----
Q 047171 1122 KQRIALARAVLKNPMILLLDEA------TSALDSASENLVQEALEKMMV---GRTCVVVAHRLSTI--------QK---- 1180 (1224)
Q Consensus 1122 rQRlaLARAll~~p~ILlLDEa------TSaLD~~te~~I~~~l~~~~~---~~TvI~IaHrl~ti--------~~---- 1180 (1224)
++++.++++...+|+++|+||| |++||+.+.+.+.+.++++.+ +.++++++|+++.. +.
T Consensus 134 ~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~ 213 (608)
T 3szr_A 134 HELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPE 213 (608)
T ss_dssp SCCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSS
T ss_pred hHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhc
Confidence 2445555555668999999999 999999999999999998642 45778889987632 22
Q ss_pred -cCEEEEEeCCEEEEecChhHHh
Q 047171 1181 -ADNIVVIKNGKVVEQGTQSSLL 1202 (1224)
Q Consensus 1181 -aD~I~vl~~G~Ive~Gt~~eLl 1202 (1224)
...|+|+.++.+++.|+.++++
T Consensus 214 g~rtI~VlTK~Dlv~~g~~~~~~ 236 (608)
T 3szr_A 214 GDRTIGILTKPDLVDKGTEDKVV 236 (608)
T ss_dssp CCSEEEEEECGGGSSSSSTTCCC
T ss_pred CCceEEEecchhhcCcccHHHHH
Confidence 3569999999999999876554
No 181
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.62 E-value=5.8e-16 Score=175.66 Aligned_cols=179 Identities=13% Similarity=0.090 Sum_probs=115.9
Q ss_pred EEeEEEECCCCCCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCc-EEEECCEecCCCCHHHHhcccEEecCCCCCCcccHH
Q 047171 330 FKDVDFSYPTRPDTPTIGLVGSSGSGKSTVISLLERFYDPVKG-NILLDGHKIKKLQLKWLRSQMGLVNQEPILFSTSIK 408 (1224)
Q Consensus 330 ~~~v~f~y~~~~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G-~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~ 408 (1224)
++++++.. ++++.++|+||||||||||++.|+|...|++| .|.+.+.+ .+...+++++..+.|+..+ +..
T Consensus 25 Ld~i~~~l---~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e---~~~~~~~~r~~~~~~~~~~---~~~ 95 (296)
T 1cr0_A 25 INDKTLGA---RGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLE---ESVEETAEDLIGLHNRVRL---RQS 95 (296)
T ss_dssp HHHHHCSB---CTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESS---SCHHHHHHHHHHHHTTCCG---GGC
T ss_pred HHHHhcCC---CCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCc---CCHHHHHHHHHHHHcCCCh---hhc
Confidence 45666544 45779999999999999999999999999988 77654432 3555666666555555432 223
Q ss_pred HHHhcCCCCCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHH-HHHHHHHHHhccCCCEEEEeCCCC---C-
Q 047171 409 ENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQ-KQRIAIARALIRDPKILLLDEATS---A- 483 (1224)
Q Consensus 409 ~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq-~qriaiARal~~~~~ililDE~ts---~- 483 (1224)
+|+..+. .+.++..+. +.+.+...+-+ +.+...++|.+| +||+. |+++..+|+++|+||||+ +
T Consensus 96 ~~l~~~~--~~~~~~~~~-----~~~~l~~~~l~----i~~~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~ 163 (296)
T 1cr0_A 96 DSLKREI--IENGKFDQW-----FDELFGNDTFH----LYDSFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSAS 163 (296)
T ss_dssp HHHHHHH--HHHTHHHHH-----HHHHHSSSCEE----EECCCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC------
T ss_pred cccccCC--CCHHHHHHH-----HHHHhccCCEE----EECCCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCC
Confidence 4443321 111222221 12222222222 334445789999 77777 999999999999999999 4
Q ss_pred --CCH-HHHHHHHHHHHHHc--CCCeEEEEeCCc--c--------------------hhhc-cCEEEEEeCceE
Q 047171 484 --LDA-ESERIVQEALDQAS--QGRTMIIIAHRL--S--------------------TIRK-ADLIGVLQSGRV 529 (1224)
Q Consensus 484 --lD~-~~~~~i~~~l~~~~--~~~t~i~i~H~l--~--------------------~~~~-ad~i~vl~~G~i 529 (1224)
+|. .....+.+.|+++. .|.|+|+++|.. + .+.+ ||+|++|++|+.
T Consensus 164 ~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 164 GESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp -----CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred CCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 344 44566777777653 389999999995 4 5554 999999999875
No 182
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.62 E-value=1.4e-17 Score=178.69 Aligned_cols=170 Identities=16% Similarity=0.203 Sum_probs=103.2
Q ss_pred EEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhccc-----CCCCceEEE-------CCccCC
Q 047171 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFY-----DPQSGSVMV-------DERNIK 1045 (1224)
Q Consensus 978 I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~-----~p~~G~I~i-------dG~di~ 1045 (1224)
|+++|++|+|+ .+++++ |.+++|++++|+|++|||||||++.|.|.. .|+.|.+.+ ++..+-
T Consensus 4 l~~~~~~~~~~----~~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l~ 77 (210)
T 1pui_A 4 LNYQQTHFVMS----APDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLV 77 (210)
T ss_dssp -------CEEE----ESSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEE
T ss_pred hhhhhhhheee----cCCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEEE
Confidence 78999999995 257888 899999999999999999999999999998 788887754 222221
Q ss_pred C---C--------CHHHHhcceEEEecCCCCCcc-cHHHHHccCCCCCCHHHHHHHHHHHhHHHHHHhcccccccccCCC
Q 047171 1046 S---Y--------NLRKLRSCIALVSQEPTLFAG-TIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGER 1113 (1224)
Q Consensus 1046 ~---~--------~~~~lR~~i~~V~Qdp~LF~g-TIreNl~~~~~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~ 1113 (1224)
+ . ..+.+++.++++.|++..+++ ++..++..+. ...++++.+.++. ..+|. ..++..
T Consensus 78 Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~-~~~~~~~~~~~~~-------~~~~~---~~v~nK 146 (210)
T 1pui_A 78 DLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPL-KDLDQQMIEWAVD-------SNIAV---LVLLTK 146 (210)
T ss_dssp ECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCC-CHHHHHHHHHHHH-------TTCCE---EEEEEC
T ss_pred ECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCC-chhHHHHHHHHHH-------cCCCe---EEEEec
Confidence 1 1 113455556666665433332 2222332221 1011223222211 11221 123444
Q ss_pred CCCCChHHHHH-HHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC
Q 047171 1114 GVQLSGGQKQR-IALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMV 1164 (1224)
Q Consensus 1114 G~~LSGGQrQR-laLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~ 1164 (1224)
...+|+||||| +..||+++++|+++++|||||++|......+.+.|.+..+
T Consensus 147 ~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~ 198 (210)
T 1pui_A 147 ADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFS 198 (210)
T ss_dssp GGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC
T ss_pred ccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHh
Confidence 55799999999 8999999999999999999999999999999999987653
No 183
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.61 E-value=8.4e-17 Score=181.49 Aligned_cols=146 Identities=25% Similarity=0.264 Sum_probs=102.6
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCC----HHHH--hcceEEEecCCCCCc-ccHHHHHccC
Q 047171 1005 AGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYN----LRKL--RSCIALVSQEPTLFA-GTIRQNIVYG 1077 (1224)
Q Consensus 1005 ~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~----~~~l--R~~i~~V~Qdp~LF~-gTIreNl~~~ 1077 (1224)
+|+.++|||||||||||+++.|.|+++|++|+|.++|.|+.... +..| |.++++|+|++.++. .|+++|+.++
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~ 180 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAM 180 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999987654 2333 467999999998775 4788888643
Q ss_pred CCCCCHHHHHHHHHHHhHHHHHHhcccccccccCCC---CCCCChHHHHHHHHHHHHccCCC--EEEEeccCCCCCHHHH
Q 047171 1078 KEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGER---GVQLSGGQKQRIALARAVLKNPM--ILLLDEATSALDSASE 1152 (1224)
Q Consensus 1078 ~~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~---G~~LSGGQrQRlaLARAll~~p~--ILlLDEaTSaLD~~te 1152 (1224)
. ..+.+.. -+|| .|.. ...++..++||.+||||+..+|+ +|.|| |+++.|
T Consensus 181 ~-------------~~~~d~~------llDt-~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLD-a~t~~~---- 235 (304)
T 1rj9_A 181 K-------------ARGYDLL------FVDT-AGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLD-AVTGQN---- 235 (304)
T ss_dssp H-------------HHTCSEE------EECC-CCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEE-TTBCTH----
T ss_pred H-------------hCCCCEE------EecC-CCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEc-HHHHHH----
Confidence 1 0010000 1122 1111 12246777999999999999999 55566 454443
Q ss_pred HHHHHHHHHhc--CCCeEEEEccCchh
Q 047171 1153 NLVQEALEKMM--VGRTCVVVAHRLST 1177 (1224)
Q Consensus 1153 ~~I~~~l~~~~--~~~TvI~IaHrl~t 1177 (1224)
+.+.+++.. .+.|+|++||.-.+
T Consensus 236 --~~~~~~~~~~~~~~t~iivTh~d~~ 260 (304)
T 1rj9_A 236 --GLEQAKKFHEAVGLTGVIVTKLDGT 260 (304)
T ss_dssp --HHHHHHHHHHHHCCSEEEEECTTSS
T ss_pred --HHHHHHHHHHHcCCcEEEEECCccc
Confidence 333333322 27899999997554
No 184
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.60 E-value=8.7e-18 Score=188.41 Aligned_cols=129 Identities=11% Similarity=0.016 Sum_probs=95.1
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcceEEEecCCCCCcccHHHHHccCCCC---C
Q 047171 1005 AGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIALVSQEPTLFAGTIRQNIVYGKEV---A 1081 (1224)
Q Consensus 1005 ~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qdp~LF~gTIreNl~~~~~~---~ 1081 (1224)
++..|||+|+|||||||++++|.+++++. | .+ ++.+.+|+||+++|+.++++|+.++.++ .
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~l~~~-g------~~---------~~~~~iv~~D~f~~~~~~~~~l~~~~~~~~l~ 93 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNHLMEK-Y------GG---------EKSIGYASIDDFYLTHEDQLKLNEQFKNNKLL 93 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHH-H------GG---------GSCEEEEEGGGGBCCHHHHHHHHHHTTTCGGG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhhhc-C------CC---------CceEEEeccccccCChHHHHHHhccccccchh
Confidence 46789999999999999999999999863 2 10 4557777999999999999999764211 0
Q ss_pred CHHHHHHHHHHHhHHHHHHhcccccccc------cCCCCCCCChHHHHHHHHH--HHHccCCCEEEEeccCCCCCHHH
Q 047171 1082 TEAEIRKAAVLANAHEFISSTEDGYDTY------CGERGVQLSGGQKQRIALA--RAVLKNPMILLLDEATSALDSAS 1151 (1224)
Q Consensus 1082 ~deei~~al~~a~l~~~I~~lp~gldt~------vge~G~~LSGGQrQRlaLA--RAll~~p~ILlLDEaTSaLD~~t 1151 (1224)
+....-++.....+.+++..++.|++|. +...+.++||||+||+++| |++ +|+|||+||+|+++|+++
T Consensus 94 ~~~g~p~a~d~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~--~~~IlIlEG~~~~ld~~~ 169 (290)
T 1odf_A 94 QGRGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKL--PVDIFILEGWFLGFNPIL 169 (290)
T ss_dssp SSSCSTTSBCHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEES--SCSEEEEEESSTTCCCCC
T ss_pred hhccCcchhHHHHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEc--CCCEEEEeCccccCCccc
Confidence 0000011222445678899999998764 4556789999999999998 666 999999999999999864
No 185
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.60 E-value=5.4e-18 Score=182.33 Aligned_cols=138 Identities=17% Similarity=0.250 Sum_probs=104.9
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcccEEecCCCCCCc---ccHHHHHhcC--CC
Q 047171 342 DTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFS---TSIKENILIG--KP 416 (1224)
Q Consensus 342 ~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~---~ti~~ni~~g--~~ 416 (1224)
++.++||+||||||||||+++|.|++.| +++|++|++.+++ -|+++|+.+. .+
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~~----------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~~~~ 62 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLGE----------------------RVALLPMDHYYKDLGHLPLEERLRVNYDHP 62 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHGG----------------------GEEEEEGGGCBCCCTTSCHHHHHHSCTTSG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhCC----------------------CeEEEecCccccCcccccHHHhcCCCCCCh
Confidence 4568999999999999999999999875 4899999998874 3777776553 22
Q ss_pred C-CCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHH----HHHHHHHHHhccCCCEEEEeCCCCC-------C
Q 047171 417 G-ASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQ----KQRIAIARALIRDPKILLLDEATSA-------L 484 (1224)
Q Consensus 417 ~-~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq----~qriaiARal~~~~~ililDE~ts~-------l 484 (1224)
. ...+.+.++++..+ ....+...+..+|+|| +||+++||+++.+|+++++||||++ |
T Consensus 63 ~~~~~~~~~~~l~~~~-----------~~~~~~~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~l 131 (211)
T 3asz_A 63 DAFDLALYLEHAQALL-----------RGLPVEMPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFV 131 (211)
T ss_dssp GGBCHHHHHHHHHHHH-----------TTCCEEECCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEE
T ss_pred hhhhHHHHHHHHHHHH-----------cCCCcCCCcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEE
Confidence 2 22334444433222 2222334566788885 5799999999999999999999999 9
Q ss_pred CHHHHHHHHHHHHHH--cCCCeEEEEeCCc
Q 047171 485 DAESERIVQEALDQA--SQGRTMIIIAHRL 512 (1224)
Q Consensus 485 D~~~~~~i~~~l~~~--~~~~t~i~i~H~l 512 (1224)
|+..+..+.+.+.+. .+|+|++.++|+.
T Consensus 132 d~~~~~~~~r~l~r~~~~~g~t~~~~~~~~ 161 (211)
T 3asz_A 132 DADADERFIRRLKRDVLERGRSLEGVVAQY 161 (211)
T ss_dssp ECCHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred eCCHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 999998888888764 3589999999984
No 186
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.60 E-value=2e-15 Score=155.23 Aligned_cols=79 Identities=27% Similarity=0.339 Sum_probs=71.4
Q ss_pred CCCCChHHHHHHHHHHHHc----cCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEE--
Q 047171 1114 GVQLSGGQKQRIALARAVL----KNPMILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLSTIQKADNIVVI-- 1187 (1224)
Q Consensus 1114 G~~LSGGQrQRlaLARAll----~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~aD~I~vl-- 1187 (1224)
...||||||||++|||++. ++|+++||||||++||+.+.+.+.+.|++..++.++|+|||+..++..||+++.+
T Consensus 62 ~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~~~~ivith~~~~~~~ad~i~~v~~ 141 (173)
T 3kta_B 62 IEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVITLRDVMMANADKIIGVSM 141 (173)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHTTCSEEEEEEE
T ss_pred cccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhccCCEEEEEEecHHHHHhCCEEEEEEe
Confidence 3679999999999999996 5679999999999999999999999999988888999999999998899999865
Q ss_pred eCCEE
Q 047171 1188 KNGKV 1192 (1224)
Q Consensus 1188 ~~G~I 1192 (1224)
++|..
T Consensus 142 ~~g~s 146 (173)
T 3kta_B 142 RDGVS 146 (173)
T ss_dssp ETTEE
T ss_pred cCCEE
Confidence 56653
No 187
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.60 E-value=3e-19 Score=207.40 Aligned_cols=212 Identities=14% Similarity=0.017 Sum_probs=144.4
Q ss_pred HHHHHHHHHHh-cCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCcccccccc-cccc
Q 047171 249 QSWVGSVLVTE-RGEKGGLVFVAGICTILGGVGIMSALPNLSFISQATTAATRIFEMIDRVPVINSEDEIGKTLA-YLRG 326 (1224)
Q Consensus 249 ~~~~g~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~-~~~~ 326 (1224)
+.+.|++.+.. +.++.+.+.+++.++.....| .+......++.+..+.+|+++++ +|...... ...... ...+
T Consensus 51 v~~~G~~~~~~~~~lt~~~l~~~~~~~~~~~~~--~l~~~~~~~~~~l~~~~Ri~~vl--~p~~~~~~-~~~~ir~~~~~ 125 (361)
T 2gza_A 51 CERASAWEYYAVPNLDYEHLISLGTATARFVDQ--DISDSRPVLSAILPMGERIQIVR--PPACEHGT-ISVTIRKPSFT 125 (361)
T ss_dssp EEETTEEEEEECTTCCHHHHHHHHHHHHHHTTC--CCSSSSCEEEEECTTSCEEEEEC--TTTBCTTC-CEEEEECCCCC
T ss_pred EEECCeEEEeCCCCCCHHHHHHHHHHHHHHcCC--ccCCCCCeEEEEcCCCcEEEEEe--cCccCCCC-eEEEEEecCCC
Confidence 44567666665 789999999988777665444 12222223344445667888877 33322110 000000 0123
Q ss_pred cE---------EEEeEEEE---CCC---------------C------CCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcE
Q 047171 327 EI---------EFKDVDFS---YPT---------------R------PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGN 373 (1224)
Q Consensus 327 ~i---------~~~~v~f~---y~~---------------~------~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~ 373 (1224)
.+ +|+||+|+ |++ . ++++.++|+||||||||||+++|+|+++|++|.
T Consensus 126 ~itl~~l~~~g~f~~v~f~~~~Y~~~~~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~ 205 (361)
T 2gza_A 126 RRTLEDYAQQGFFKHVRPMSKSLTPFEQELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRL 205 (361)
T ss_dssp CCCHHHHHHTTTTSCCCCSCSCCCHHHHHHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCE
T ss_pred CCCHHHHHhcCCcCccccccccccchhHHHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceE
Confidence 35 89999999 863 1 256799999999999999999999999999999
Q ss_pred EEECCEecCCCCHHHHhcccEEec-CCCCC---CcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhccccccccccC
Q 047171 374 ILLDGHKIKKLQLKWLRSQMGLVN-QEPIL---FSTSIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQ 449 (1224)
Q Consensus 374 i~~~g~~~~~~~~~~~r~~i~~v~-Q~~~l---f~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~ 449 (1224)
|.++|. .++....+++.+++++ |++.+ +..|+++||.++.....+..+..+++.+++++++..+|.|++|.+++
T Consensus 206 I~ie~~--~e~~~~~~~~~v~~v~~q~~~~~~~~~~t~~~~i~~~l~~~pd~~l~~e~r~~~~~~~l~~l~~g~~~~l~t 283 (361)
T 2gza_A 206 ITIEDV--PELFLPDHPNHVHLFYPSEAKEEENAPVTAATLLRSCLRMKPTRILLAELRGGEAYDFINVAASGHGGSITS 283 (361)
T ss_dssp EEEESS--SCCCCTTCSSEEEEECC----------CCHHHHHHHHTTSCCSEEEESCCCSTHHHHHHHHHHTTCCSCEEE
T ss_pred EEECCc--cccCccccCCEEEEeecCccccccccccCHHHHHHHHHhcCCCEEEEcCchHHHHHHHHHHHhcCCCeEEEE
Confidence 999974 4555555778899999 98876 77899999998765433333333344456778999999999999998
Q ss_pred CCCCCChHHHHHHHHHHH
Q 047171 450 FGVQLSGGQKQRIAIARA 467 (1224)
Q Consensus 450 ~g~~LSgGq~qriaiARa 467 (1224)
-..+-..+..+|+.....
T Consensus 284 ~H~~~~~~~~~Rl~~l~~ 301 (361)
T 2gza_A 284 CHAGSCELTFERLALMVL 301 (361)
T ss_dssp EECSSHHHHHHHHHHHHT
T ss_pred ECCCCHHHHHHHHHHHHh
Confidence 888888999999987763
No 188
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.60 E-value=4.8e-17 Score=190.66 Aligned_cols=166 Identities=14% Similarity=0.165 Sum_probs=101.4
Q ss_pred ccEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcc
Q 047171 976 GFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSC 1055 (1224)
Q Consensus 976 g~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~ 1055 (1224)
+.|+++|++++|+. .++++|+||+| +|||+||||||||++.|+|...|..| .+|.++... ....++.
T Consensus 10 ~~l~~~~l~~~y~~---~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~---~~~~~~~~~-~t~~~~~ 76 (418)
T 2qag_C 10 GYVGFANLPNQVYR---KSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPE---YPGPSHRIK-KTVQVEQ 76 (418)
T ss_dssp -----CCCCCCTTT---TTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCC---CCSCC------CCEEEE
T ss_pred CcEEEEecceeECC---EEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCC---CCCcccCCc-cceeeee
Confidence 46899999999963 46999999998 99999999999999999999876555 244433211 1112467
Q ss_pred eEEEecCCCCC-cccHHHHHccCCCCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHccC
Q 047171 1056 IALVSQEPTLF-AGTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKN 1134 (1224)
Q Consensus 1056 i~~V~Qdp~LF-~gTIreNl~~~~~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll~~ 1134 (1224)
+++++|++.++ ..||.||+.++... +.++.|+. +.+++.. .++.+.+||++||||++++
T Consensus 77 i~~v~q~~~~~~~Ltv~Dt~g~~~~~-~~~~~~~~-----i~~~i~~--------------~~~~~l~qr~~IaRal~~d 136 (418)
T 2qag_C 77 SKVLIKEGGVQLLLTIVDTPGFGDAV-DNSNCWQP-----VIDYIDS--------------KFEDYLNAESRVNRRQMPD 136 (418)
T ss_dssp EECC------CEEEEEEECC------------CHH-----HHHHHHH--------------HHHHHTTTSCC-CCCCCCC
T ss_pred EEEEEecCCcccceeeeechhhhhhc-cchhhHHH-----HHHHHHH--------------HHHHHHHHHHHHHHHhccC
Confidence 99999998876 67999999887532 22222322 2233321 2345667899999999999
Q ss_pred CC---EEEEeccC-CCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhh
Q 047171 1135 PM---ILLLDEAT-SALDSASENLVQEALEKMMVGRTCVVVAHRLSTI 1178 (1224)
Q Consensus 1135 p~---ILlLDEaT-SaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti 1178 (1224)
|+ +|++|||| ++||+..... ++.+..+.++|+|.|+.+.+
T Consensus 137 ~~~~vlL~ldePt~~~L~~~d~~~----lk~L~~~v~iIlVinK~Dll 180 (418)
T 2qag_C 137 NRVQCCLYFIAPSGHGLKPLDIEF----MKRLHEKVNIIPLIAKADTL 180 (418)
T ss_dssp C-CCEEEEECCC-CCSCCHHHHHH----HHHHTTTSEEEEEEESTTSS
T ss_pred CCeeEEEEEecCcccCCCHHHHHH----HHHHhccCcEEEEEEcccCc
Confidence 99 99999999 6999876422 33334578899999987754
No 189
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.60 E-value=5.2e-17 Score=200.98 Aligned_cols=181 Identities=17% Similarity=0.264 Sum_probs=116.5
Q ss_pred cEEEEeEEEECCCC-------------------CCCCEEEEEcCCCCcHHHHHHHHhcCCCC-CCcEEEECCEecCC--C
Q 047171 327 EIEFKDVDFSYPTR-------------------PDTPTIGLVGSSGSGKSTVISLLERFYDP-VKGNILLDGHKIKK--L 384 (1224)
Q Consensus 327 ~i~~~~v~f~y~~~-------------------~~~~~~~ivG~sGsGKSTl~~ll~~~~~~-~~G~i~~~g~~~~~--~ 384 (1224)
.++++|+++.|+.. -..+.+|||||||||||||+++|+|++.| ++|.|+++|.++.. .
T Consensus 10 ~i~~~~l~~~~~~~~r~ll~~id~l~~~gv~~~l~lp~iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~~~~~ 89 (608)
T 3szr_A 10 SVAENNLCSQYEEKVRPCIDLIDSLRALGVEQDLALPAIAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLKLKKL 89 (608)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHSCCSSCCCCCEECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEEEEEC
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHhCCCCCcccCCeEEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEEEecC
Confidence 46778888888521 12347999999999999999999999988 79999999999632 1
Q ss_pred -CHHHHhcccEEecCCCCCCcc-cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHH
Q 047171 385 -QLKWLRSQMGLVNQEPILFST-SIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRI 462 (1224)
Q Consensus 385 -~~~~~r~~i~~v~Q~~~lf~~-ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qri 462 (1224)
....+|+.|||++|++.+++. ||++||.++. . .+.. .+..+| ++++
T Consensus 90 ~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~------------~------~~~~-----------~~~~~s---~~~i 137 (608)
T 3szr_A 90 VNEDKWRGKVSYQDYEIEISDASEVEKEINKAQ------------N------AIAG-----------EGMGIS---HELI 137 (608)
T ss_dssp SSSSCCEEEESCC---CCCCCHHHHHTTHHHHH------------H------HHHC-----------SSSCCC---SCCE
T ss_pred CccccceeEEeeecccccCCCHHHHHHHHHHHH------------H------HhcC-----------Cccccc---hHHH
Confidence 234578899999999988754 9999986421 0 0100 011112 2444
Q ss_pred HHHHHhccCCCEEEEeCC------CCCCCHHHHHHHHHHHHHHc---CCCeEEEEeCCcchh--------hc-----cCE
Q 047171 463 AIARALIRDPKILLLDEA------TSALDAESERIVQEALDQAS---QGRTMIIIAHRLSTI--------RK-----ADL 520 (1224)
Q Consensus 463 aiARal~~~~~ililDE~------ts~lD~~~~~~i~~~l~~~~---~~~t~i~i~H~l~~~--------~~-----ad~ 520 (1224)
.++.+...+|+++++||| |++||+..+..+.+.+.+.. .+.++++++|+++.. +. ...
T Consensus 138 ~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rt 217 (608)
T 3szr_A 138 TLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRT 217 (608)
T ss_dssp EEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSE
T ss_pred HHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCce
Confidence 555555678999999999 99999999999999998853 256788899998733 11 356
Q ss_pred EEEEeCceEEeecChHHHH
Q 047171 521 IGVLQSGRVIESGSHDVLM 539 (1224)
Q Consensus 521 i~vl~~G~i~~~g~~~~l~ 539 (1224)
|.|+.++.+++.|+.+++.
T Consensus 218 I~VlTK~Dlv~~g~~~~~~ 236 (608)
T 3szr_A 218 IGILTKPDLVDKGTEDKVV 236 (608)
T ss_dssp EEEEECGGGSSSSSTTCCC
T ss_pred EEEecchhhcCcccHHHHH
Confidence 8999999998888765544
No 190
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.59 E-value=1.8e-17 Score=193.67 Aligned_cols=73 Identities=22% Similarity=0.351 Sum_probs=61.9
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcCCCCCC----cEEEE----CCEecCCCCHHHHhcccEEecCCCCCCcccHHHHHhcC
Q 047171 343 TPTIGLVGSSGSGKSTVISLLERFYDPVK----GNILL----DGHKIKKLQLKWLRSQMGLVNQEPILFSTSIKENILIG 414 (1224)
Q Consensus 343 ~~~~~ivG~sGsGKSTl~~ll~~~~~~~~----G~i~~----~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~g 414 (1224)
+++++|+||||||||||+++|+|+++|++ |+|++ +|.++ .++..++ ++|++++|++.+|+.|++|||.++
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~~~~~-~~~~~~~-~~I~~~~q~~~~~~~t~~~nl~~~ 247 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQ-AMQYSDY-PQMALGHQRYIDYAVRHSHKIAFI 247 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSSSCTT-SSCTTTH-HHHHHHHHHHHHHHHHHCSSEEEE
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcCCCcc-cCChhHH-HHHHHHHHHHHHHHHhccCCEEEE
Confidence 56899999999999999999999999999 99987 45555 4555555 569999999999999999999987
Q ss_pred CCC
Q 047171 415 KPG 417 (1224)
Q Consensus 415 ~~~ 417 (1224)
..+
T Consensus 248 ~~~ 250 (365)
T 1lw7_A 248 DTD 250 (365)
T ss_dssp SSC
T ss_pred eCC
Confidence 643
No 191
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.59 E-value=1.1e-16 Score=184.82 Aligned_cols=157 Identities=17% Similarity=0.174 Sum_probs=109.9
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHhcCC--CCCC----cE-EEECCEecCCCCHHHHhcccEEecCCCCCCcccHHHHHhc
Q 047171 341 PDTPTIGLVGSSGSGKSTVISLLERFY--DPVK----GN-ILLDGHKIKKLQLKWLRSQMGLVNQEPILFSTSIKENILI 413 (1224)
Q Consensus 341 ~~~~~~~ivG~sGsGKSTl~~ll~~~~--~~~~----G~-i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~ 413 (1224)
+++.+++|+||||||||||++.+++.+ +|++ |. |++++.+.. .++++++++|++.++..++.+||.+
T Consensus 129 ~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~------~~~~i~~i~q~~~~~~~~v~~ni~~ 202 (349)
T 1pzn_A 129 ETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF------RPERIREIAQNRGLDPDEVLKHIYV 202 (349)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC------CHHHHHHHHHTTTCCHHHHGGGEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC------CHHHHHHHHHHcCCCHHHHhhCEEE
Confidence 456799999999999999999999998 6766 68 899987641 2467889999998888899999987
Q ss_pred CCCCCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhc-------cCCCEEEEeCCCCCCCH
Q 047171 414 GKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALI-------RDPKILLLDEATSALDA 486 (1224)
Q Consensus 414 g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~-------~~~~ililDE~ts~lD~ 486 (1224)
.... + |++|+|++.++++++ .+|+++|+||||+.+|+
T Consensus 203 ~~~~-~-----------------------------------~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~ 246 (349)
T 1pzn_A 203 ARAF-N-----------------------------------SNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRS 246 (349)
T ss_dssp EECC-S-----------------------------------HHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHH
T ss_pred EecC-C-----------------------------------hHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhh
Confidence 6431 1 244666666666666 68999999999999998
Q ss_pred HH-------H-----HHHHHHHHHHc--CCCeEEEEeCCcchhhc-cCEEEEEeCceEEeecChHHHH
Q 047171 487 ES-------E-----RIVQEALDQAS--QGRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGSHDVLM 539 (1224)
Q Consensus 487 ~~-------~-----~~i~~~l~~~~--~~~t~i~i~H~l~~~~~-ad~i~vl~~G~i~~~g~~~~l~ 539 (1224)
+. + ..+...|.++. .|.|+|+++|....... .+.+.+...|++++++.+..|.
T Consensus 247 ~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~~~~~~~~~~~~~~~G~~l~~~~~~rL~ 314 (349)
T 1pzn_A 247 EYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQARPDAFFGDPTRPIGGHILAHSATLRVY 314 (349)
T ss_dssp HCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC---------------CCCCCTTCSEEEE
T ss_pred hhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEcccccccccccCCccccCCcceEeecCcEEEE
Confidence 62 1 23333444432 48999999998875543 3456778889999888877664
No 192
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.59 E-value=9.4e-16 Score=172.93 Aligned_cols=147 Identities=22% Similarity=0.235 Sum_probs=101.7
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCC----HHHH--hcccEEecCCCCCCcc-cHHHHHhcC
Q 047171 342 DTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQ----LKWL--RSQMGLVNQEPILFST-SIKENILIG 414 (1224)
Q Consensus 342 ~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~----~~~~--r~~i~~v~Q~~~lf~~-ti~~ni~~g 414 (1224)
++++++|||||||||||+++.|+|+++|++|+|.++|.|+.... ...+ |.++++|+|++.+++. ++++|+.++
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~ 180 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAM 180 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 46799999999999999999999999999999999999986543 1222 4579999999988765 888888643
Q ss_pred CCCCCHHHHHHHHHHhcHHHHHHhccccccccccC---CCCCCChHHHHHHHHHHHhccCCC--EEEEeCCCCCCCHHHH
Q 047171 415 KPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQ---FGVQLSGGQKQRIAIARALIRDPK--ILLLDEATSALDAESE 489 (1224)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~---~g~~LSgGq~qriaiARal~~~~~--ililDE~ts~lD~~~~ 489 (1224)
. ..+.+..+ +|| .|. ....++..+|||++||||+..+|+ +|.|| |+++.|
T Consensus 181 ~-------------~~~~d~~l------lDt-~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLD-a~t~~~---- 235 (304)
T 1rj9_A 181 K-------------ARGYDLLF------VDT-AGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLD-AVTGQN---- 235 (304)
T ss_dssp H-------------HHTCSEEE------ECC-CCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEE-TTBCTH----
T ss_pred H-------------hCCCCEEE------ecC-CCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEc-HHHHHH----
Confidence 1 00100000 121 111 112246677999999999999999 55566 444443
Q ss_pred HHHHHHHHHH--cCCCeEEEEeCCcchh
Q 047171 490 RIVQEALDQA--SQGRTMIIIAHRLSTI 515 (1224)
Q Consensus 490 ~~i~~~l~~~--~~~~t~i~i~H~l~~~ 515 (1224)
+.+.++.. ..+.|+|++||...+.
T Consensus 236 --~~~~~~~~~~~~~~t~iivTh~d~~a 261 (304)
T 1rj9_A 236 --GLEQAKKFHEAVGLTGVIVTKLDGTA 261 (304)
T ss_dssp --HHHHHHHHHHHHCCSEEEEECTTSSC
T ss_pred --HHHHHHHHHHHcCCcEEEEECCcccc
Confidence 22233322 1378999999986543
No 193
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.59 E-value=3.1e-15 Score=153.84 Aligned_cols=80 Identities=25% Similarity=0.316 Sum_probs=71.6
Q ss_pred CCCCCChHHHHHHHHHHHhc----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCCcchhhccCEEEEE-
Q 047171 450 FGVQLSGGQKQRIAIARALI----RDPKILLLDEATSALDAESERIVQEALDQASQGRTMIIIAHRLSTIRKADLIGVL- 524 (1224)
Q Consensus 450 ~g~~LSgGq~qriaiARal~----~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~i~H~l~~~~~ad~i~vl- 524 (1224)
....||||||||++|||+++ ++|+++||||||++||+.+...+.+.|++..++.++|+|||+......||+++.+
T Consensus 61 ~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~~~~ivith~~~~~~~ad~i~~v~ 140 (173)
T 3kta_B 61 RIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVITLRDVMMANADKIIGVS 140 (173)
T ss_dssp CGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHTTCSEEEEEE
T ss_pred ccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhccCCEEEEEEecHHHHHhCCEEEEEE
Confidence 34789999999999999996 5679999999999999999999999999888888999999999988889999865
Q ss_pred -eCceE
Q 047171 525 -QSGRV 529 (1224)
Q Consensus 525 -~~G~i 529 (1224)
++|..
T Consensus 141 ~~~g~s 146 (173)
T 3kta_B 141 MRDGVS 146 (173)
T ss_dssp EETTEE
T ss_pred ecCCEE
Confidence 56753
No 194
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.58 E-value=3.6e-16 Score=170.31 Aligned_cols=151 Identities=19% Similarity=0.209 Sum_probs=99.3
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHhcCCCC-------CCcEEEECCEecCCCCHHHHhcccEEecCCCCCCcccHHHHHhc
Q 047171 341 PDTPTIGLVGSSGSGKSTVISLLERFYDP-------VKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFSTSIKENILI 413 (1224)
Q Consensus 341 ~~~~~~~ivG~sGsGKSTl~~ll~~~~~~-------~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~ 413 (1224)
+++++++|+||||||||||++.|+|.+.| ..|.+++++.+. .+ ++++++++|+..++..|+.||+.+
T Consensus 23 ~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~--~~----~~~i~~~~~~~~~~~~~~~~~~~~ 96 (231)
T 4a74_A 23 ETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT--FR----PERIREIAQNRGLDPDEVLKHIYV 96 (231)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC--CC----HHHHHHHHHHTTSCHHHHHHTEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCC--CC----HHHHHHHHHHcCCCHHHHhhcEEE
Confidence 35679999999999999999999996655 445888887642 11 235778888888887899999987
Q ss_pred CCCCCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHh--ccCCCEEEEeCCCCCCCHH----
Q 047171 414 GKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARAL--IRDPKILLLDEATSALDAE---- 487 (1224)
Q Consensus 414 g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal--~~~~~ililDE~ts~lD~~---- 487 (1224)
..+.. ..+.....+ .+.+.+. +++ ..+|++++|||||+.+|++
T Consensus 97 ~~~~~-~~~~~~~~~--~~~~~~~----------------------------~~~~~~~~~~llilDe~~~~l~~~~~~~ 145 (231)
T 4a74_A 97 ARAFN-SNHQMLLVQ--QAEDKIK----------------------------ELLNTDRPVKLLIVDSLTSHFRSEYIGR 145 (231)
T ss_dssp EECCS-HHHHHHHHH--HHHHHHH----------------------------HHTTSSSCEEEEEEETSSHHHHHHSCST
T ss_pred EecCC-hHHHHHHHH--HHHHHHH----------------------------HhcccCCceeEEEECChHHHhccccCCC
Confidence 65422 111111110 1111111 111 3589999999999999984
Q ss_pred ---HH-----HHHHHHHHHH--cCCCeEEEEeCCcc----hhhc-cCEEEEEeCce
Q 047171 488 ---SE-----RIVQEALDQA--SQGRTMIIIAHRLS----TIRK-ADLIGVLQSGR 528 (1224)
Q Consensus 488 ---~~-----~~i~~~l~~~--~~~~t~i~i~H~l~----~~~~-ad~i~vl~~G~ 528 (1224)
.+ ..+.+.+.++ ..|.|+|+++|..+ .+.+ ||++++|++|+
T Consensus 146 ~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~~ 201 (231)
T 4a74_A 146 GALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKGK 201 (231)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEECT
T ss_pred cchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEecC
Confidence 22 1444555443 24899999999544 4765 99999998753
No 195
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.58 E-value=6.2e-17 Score=183.25 Aligned_cols=163 Identities=17% Similarity=0.183 Sum_probs=79.8
Q ss_pred EEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcc-cCCCCceEEECCccCCCCCHHHHhcceEEE
Q 047171 981 KNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERF-YDPQSGSVMVDERNIKSYNLRKLRSCIALV 1059 (1224)
Q Consensus 981 ~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl-~~p~~G~I~idG~di~~~~~~~lR~~i~~V 1059 (1224)
+|+++.|. ...+++|++|+| +|+|+||+|||||++.|+|. ..|.+| |.++|.++.. .. -++.++++
T Consensus 2 ~~l~~~~~---~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~-t~--~~~~~~~~ 68 (301)
T 2qnr_A 2 SNLPNQVH---RKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIER-TV--QIEASTVE 68 (301)
T ss_dssp -------------------CEEE------EEEEETTSSHHHHHHHHHC----------------------------CEEE
T ss_pred CCCcceEC---CEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCC-cc--eEeeEEEE
Confidence 46888885 346999999998 99999999999999999998 888999 9999987653 11 24668999
Q ss_pred ecCCCCC-cccHHHHHccCCCCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHccCCCEE
Q 047171 1060 SQEPTLF-AGTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMIL 1138 (1224)
Q Consensus 1060 ~Qdp~LF-~gTIreNl~~~~~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll~~p~IL 1138 (1224)
+|++.++ .-|+.|+..++......+..... .+++.. -++..+ .++|||||||+++|||+. +|
T Consensus 69 ~q~~~~~~~ltv~Dt~g~~~~~~~~e~~~~l------~~~l~~---~~~~~~----~~~sgg~rqrv~~ara~~----ll 131 (301)
T 2qnr_A 69 IEERGVKLRLTVVDTPGYGDAINCRDCFKTI------ISYIDE---QFERYL----HDESGLNRRHIIDNRVHC----CF 131 (301)
T ss_dssp EC---CCEEEEEEEEC-----------CTTH------HHHHHH---HHHHHH----HHHTSSCCTTCCCCCCCE----EE
T ss_pred ecCCCcccCcchhhhhhhhhhcCcHHHHHHH------HHHHHH---HHHHHH----HHhCHHhhhhhhhhhhhh----ee
Confidence 9987654 56888887765321111111111 111111 112222 248999999999999986 99
Q ss_pred EEeccCCC-CCHHHHHHHHHHHHHhcC--CCeEEEEccCchh
Q 047171 1139 LLDEATSA-LDSASENLVQEALEKMMV--GRTCVVVAHRLST 1177 (1224)
Q Consensus 1139 lLDEaTSa-LD~~te~~I~~~l~~~~~--~~TvI~IaHrl~t 1177 (1224)
++||||++ ||+... +.++++.+ +.++|+..|++.+
T Consensus 132 ~ldePt~~~Ld~~~~----~~l~~l~~~~~iilV~~K~Dl~~ 169 (301)
T 2qnr_A 132 YFISPFGHGLKPLDV----AFMKAIHNKVNIVPVIAKADTLT 169 (301)
T ss_dssp EEECSSSSSCCHHHH----HHHHHHTTTSCEEEEECCGGGSC
T ss_pred eeecCcccCCCHHHH----HHHHHHHhcCCEEEEEEeCCCCC
Confidence 99999985 999874 33433333 4567777898753
No 196
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.58 E-value=2.7e-15 Score=193.97 Aligned_cols=142 Identities=15% Similarity=0.125 Sum_probs=104.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcccE-EecCCCCCCcccHHHHHhcCCCCCCHH
Q 047171 343 TPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMG-LVNQEPILFSTSIKENILIGKPGASME 421 (1224)
Q Consensus 343 ~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~-~v~Q~~~lf~~ti~~ni~~g~~~~~~~ 421 (1224)
+.+++|+|||||||||+++.+ |++.+ ..++| ||||++. .-|+.|||.. +-
T Consensus 789 g~i~~ItGpNgsGKSTlLr~i-Gl~~~--------------------~aqiG~~Vpq~~~--~l~v~d~I~~-ri----- 839 (1022)
T 2o8b_B 789 AYCVLVTGPNMGGKSTLMRQA-GLLAV--------------------MAQMGCYVPAEVC--RLTPIDRVFT-RL----- 839 (1022)
T ss_dssp CCEEEEECCTTSSHHHHHHHH-HHHHH--------------------HHTTTCCEESSEE--EECCCSBEEE-EC-----
T ss_pred CcEEEEECCCCCChHHHHHHH-HHHHH--------------------HhheeEEeccCcC--CCCHHHHHHH-Hc-----
Confidence 579999999999999999999 98763 34677 9999873 4577777642 11
Q ss_pred HHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHH-HHHHHHHHHHHc
Q 047171 422 TVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAES-ERIVQEALDQAS 500 (1224)
Q Consensus 422 ~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~ililDE~ts~lD~~~-~~~i~~~l~~~~ 500 (1224)
++.+.+ ..+..++|+++++ +++||+++.+|+++||||||+++|+.. ...+++.++.+.
T Consensus 840 ---------g~~d~~-----------~~~~stf~~em~~-~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~ 898 (1022)
T 2o8b_B 840 ---------GASDRI-----------MSGESTFFVELSE-TASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELA 898 (1022)
T ss_dssp ---------C--------------------CHHHHHHHH-HHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHH
T ss_pred ---------CCHHHH-----------hhchhhhHHHHHH-HHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHH
Confidence 111111 1122467777775 999999999999999999999999986 455677777654
Q ss_pred -C-CCeEEEEeCCcchhhc-cCEEEEEeCceEE--eecCh
Q 047171 501 -Q-GRTMIIIAHRLSTIRK-ADLIGVLQSGRVI--ESGSH 535 (1224)
Q Consensus 501 -~-~~t~i~i~H~l~~~~~-ad~i~vl~~G~i~--~~g~~ 535 (1224)
+ |+|+|++||+++.+.. +|++.++ +|++. +.|+.
T Consensus 899 ~~~g~~vl~~TH~~el~~~~~d~~~v~-~g~~~~~~~~~~ 937 (1022)
T 2o8b_B 899 ETIKCRTLFSTHYHSLVEDYSQNVAVR-LGHMACMVENEC 937 (1022)
T ss_dssp HTSCCEEEEECCCHHHHHHTSSCSSEE-EEEEEEC-----
T ss_pred hcCCCEEEEEeCCHHHHHHhCCcceee-cCeEEEEEecCc
Confidence 3 8999999999999876 9998886 58887 45544
No 197
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.56 E-value=3.5e-17 Score=183.47 Aligned_cols=127 Identities=11% Similarity=0.064 Sum_probs=93.7
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcccEEecCCCCCCcccHHHHHhcCCCC---CCH
Q 047171 344 PTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFSTSIKENILIGKPG---ASM 420 (1224)
Q Consensus 344 ~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~g~~~---~~~ 420 (1224)
.+++|+|+||||||||+++|.+++++. | . . ++.+.+|+||+++|+.++++|+.++.++ ...
T Consensus 32 ~ii~I~G~sGsGKSTla~~L~~~l~~~-g------~--------~-~~~~~iv~~D~f~~~~~~~~~l~~~~~~~~l~~~ 95 (290)
T 1odf_A 32 LFIFFSGPQGSGKSFTSIQIYNHLMEK-Y------G--------G-EKSIGYASIDDFYLTHEDQLKLNEQFKNNKLLQG 95 (290)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHH-H------G--------G-GSCEEEEEGGGGBCCHHHHHHHHHHTTTCGGGSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhc-C------C--------C-CceEEEeccccccCChHHHHHHhccccccchhhh
Confidence 489999999999999999999999864 2 0 0 3456666999999999999999876421 000
Q ss_pred HHHHHHHHHhcHHHHHHhcccccccc------ccCCCCCCChHHHHHHHHH--HHhccCCCEEEEeCCCCCCCHHH
Q 047171 421 ETVVKAAQAANVHDFIMKLNDGYETK------VGQFGVQLSGGQKQRIAIA--RALIRDPKILLLDEATSALDAES 488 (1224)
Q Consensus 421 ~~~~~~~~~~~~~~~i~~l~~g~~t~------~~~~g~~LSgGq~qriaiA--Ral~~~~~ililDE~ts~lD~~~ 488 (1224)
....++.....+.+++..++.|++|. +...+.++||||+||+++| |++ +|+|+|+||+|+++|+++
T Consensus 96 ~g~p~a~d~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~--~~~IlIlEG~~~~ld~~~ 169 (290)
T 1odf_A 96 RGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKL--PVDIFILEGWFLGFNPIL 169 (290)
T ss_dssp SCSTTSBCHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEES--SCSEEEEEESSTTCCCCC
T ss_pred ccCcchhHHHHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEc--CCCEEEEeCccccCCccc
Confidence 00111222345678899999997763 5567789999999999998 665 999999999999999864
No 198
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.56 E-value=1.5e-16 Score=175.72 Aligned_cols=160 Identities=14% Similarity=0.078 Sum_probs=98.4
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHh--cCCCCCCcEEEECCEecCCCCHHHHhcccEEecCCCCCCcc-cHHHHHhcCCCC
Q 047171 341 PDTPTIGLVGSSGSGKSTVISLLE--RFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFST-SIKENILIGKPG 417 (1224)
Q Consensus 341 ~~~~~~~ivG~sGsGKSTl~~ll~--~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~-ti~~ni~~g~~~ 417 (1224)
+++++++|+||||||||||++.|+ |..++.+|.+.+++.+... .....++.+++++|+...+.. ++.++.......
T Consensus 28 ~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 106 (251)
T 2ehv_A 28 PEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERAR-DLRREMASFGWDFEKYEKEGKIAIVDGVSSVVGL 106 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHH-HHHHHHHTTTCCHHHHHHTTSEEEEC--------
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCCHH-HHHHHHHHcCCChHHHhhcCCEEEEEcccccccc
Confidence 357799999999999999999999 7657778888887754321 122334568888887533221 333332211000
Q ss_pred CCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCC-----HHHHHHH
Q 047171 418 ASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALD-----AESERIV 492 (1224)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~ililDE~ts~lD-----~~~~~~i 492 (1224)
...+. + ......+-++.++...+..-..+|++++|||||+.+| +...+.+
T Consensus 107 -~~~~~-----------~-------------~~~~~~~~~~~~~~~~~~l~~~~p~~lilDep~~~ld~~~d~~~~~~~l 161 (251)
T 2ehv_A 107 -PSEEK-----------F-------------VLEDRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIALRLEEERKIREVL 161 (251)
T ss_dssp ------------------------------------CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHSSSGGGHHHHH
T ss_pred -ccccc-----------e-------------eccCcccHHHHHHHHHHHHHhhCCCEEEEccHHHHHhhcCCHHHHHHHH
Confidence 00000 0 0001122344444444444457999999999999997 5566667
Q ss_pred HHHHHHHc-CCCeEEEEeCCcchh---------h-cc-CEEEEEeC
Q 047171 493 QEALDQAS-QGRTMIIIAHRLSTI---------R-KA-DLIGVLQS 526 (1224)
Q Consensus 493 ~~~l~~~~-~~~t~i~i~H~l~~~---------~-~a-d~i~vl~~ 526 (1224)
.+.++.++ .|+|+|++||.++.+ . .| |+|++|++
T Consensus 162 ~~l~~~l~~~g~tii~vtH~~~~~~~~~~~~~i~~~~aD~vi~l~~ 207 (251)
T 2ehv_A 162 LKLNTILLEMGVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVLDL 207 (251)
T ss_dssp HHHHHHHHHHCCEEEEEECCC----CCSSSSSCGGGGCSEEEEEEE
T ss_pred HHHHHHHHHCCCeEEEEECCCCCCcccccccChhhEeeeEEEEEee
Confidence 77777654 589999999999887 3 47 99999964
No 199
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.55 E-value=2.8e-15 Score=163.42 Aligned_cols=165 Identities=13% Similarity=0.094 Sum_probs=114.6
Q ss_pred ccceeceeE-EEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhc---ceEEEecCCCCCcc
Q 047171 993 QMIFKGLTL-KIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRS---CIALVSQEPTLFAG 1068 (1224)
Q Consensus 993 ~~vL~~isl-~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~---~i~~V~Qdp~LF~g 1068 (1224)
.+.|+++.. .+++|+.++|+||||||||||++.|++...+.+|.+.+.+.+. +.+.+++ .+++.+|+...
T Consensus 9 ~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~---~~~~~~~~~~~~~~~~~~~~~--- 82 (235)
T 2w0m_A 9 ILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEE---SRDSIIRQAKQFNWDFEEYIE--- 82 (235)
T ss_dssp CHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSS---CHHHHHHHHHHTTCCCGGGBT---
T ss_pred chHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEccc---CHHHHHHHHHHhcchHHHHhh---
Confidence 457899998 8999999999999999999999999998888888888876544 2333332 34444443211
Q ss_pred cHHHHHccCCCCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHccCCC--EEEEeccCCC
Q 047171 1069 TIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPM--ILLLDEATSA 1146 (1224)
Q Consensus 1069 TIreNl~~~~~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll~~p~--ILlLDEaTSa 1146 (1224)
+++..... .... .+ + ..+- ...|.+|.++...+.+...+|+ +|++||||+.
T Consensus 83 ---~~~~~~~~-~~~~--------~~--------~----~~~~---~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~ 135 (235)
T 2w0m_A 83 ---KKLIIIDA-LMKE--------KE--------D----QWSL---VNLTPEELVNKVIEAKQKLGYGKARLVIDSVSAL 135 (235)
T ss_dssp ---TTEEEEEC-CC--------------------C----TTBC---SSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGG
T ss_pred ---CCEEEEec-cccc--------cC--------c----eeee---cCCCHHHHHHHHHHHHHhhCCCceEEEEECchHh
Confidence 11111100 0000 00 0 0011 1348999998888887778999 9999999988
Q ss_pred C--CHHHHHHHHHHHHHhc--CCCeEEEEccCc--------hhhhh-cCEEEEEeCC
Q 047171 1147 L--DSASENLVQEALEKMM--VGRTCVVVAHRL--------STIQK-ADNIVVIKNG 1190 (1224)
Q Consensus 1147 L--D~~te~~I~~~l~~~~--~~~TvI~IaHrl--------~ti~~-aD~I~vl~~G 1190 (1224)
+ |+.....+.+.|.++. .++|+|+++|.. ..+.. ||+|++|+..
T Consensus 136 ~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~ 192 (235)
T 2w0m_A 136 FLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRRM 192 (235)
T ss_dssp SSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEEE
T ss_pred hcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEEE
Confidence 8 9988888888887764 488999999998 44655 9999999754
No 200
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.54 E-value=9.6e-16 Score=192.28 Aligned_cols=142 Identities=19% Similarity=0.217 Sum_probs=105.8
Q ss_pred cEEEEeEEEECCCCCCCCEEEEEcCCCCcHHHHHHHHhcCCC-CCCcEEEECCEecCCCCHHHHhcccEEecCCCCCCcc
Q 047171 327 EIEFKDVDFSYPTRPDTPTIGLVGSSGSGKSTVISLLERFYD-PVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFST 405 (1224)
Q Consensus 327 ~i~~~~v~f~y~~~~~~~~~~ivG~sGsGKSTl~~ll~~~~~-~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ 405 (1224)
...++|++|. +++++|+|||||||||++++++|+.. ++.|.+.- ..+..+++++| +|..
T Consensus 566 ~~vl~disl~------g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~vp-----------a~~~~i~~v~~---i~~~ 625 (765)
T 1ewq_A 566 EFVPNDLEMA------HELVLITGPNMAGKSTFLRQTALIALLAQVGSFVP-----------AEEAHLPLFDG---IYTR 625 (765)
T ss_dssp CCCCEEEEES------SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCBS-----------SSEEEECCCSE---EEEE
T ss_pred ceEeeeccCC------CcEEEEECCCCCChHHHHHHHHhhhhhcccCceee-----------hhccceeeHHH---hhcc
Confidence 3456777775 56999999999999999999999874 67786521 12456888887 5543
Q ss_pred -cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHh--ccCCCEEEEeCC--
Q 047171 406 -SIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARAL--IRDPKILLLDEA-- 480 (1224)
Q Consensus 406 -ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal--~~~~~ililDE~-- 480 (1224)
++.||+.. .+|+|++|++.+|+++ +.+|+++|||||
T Consensus 626 ~~~~d~l~~---------------------------------------g~S~~~~e~~~la~il~~a~~p~LlLLDEpgr 666 (765)
T 1ewq_A 626 IGASDDLAG---------------------------------------GKSTFMVEMEEVALILKEATENSLVLLDEVGR 666 (765)
T ss_dssp CCC---------------------------------------------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTT
T ss_pred CCHHHHHHh---------------------------------------cccHHHHHHHHHHHHHHhccCCCEEEEECCCC
Confidence 66666543 2588999999999999 999999999999
Q ss_pred -CCCCCHHHH-HHHHHHHHHHcCCCeEEEEeCCcchhhccCEEEEEeCceEEe
Q 047171 481 -TSALDAESE-RIVQEALDQASQGRTMIIIAHRLSTIRKADLIGVLQSGRVIE 531 (1224)
Q Consensus 481 -ts~lD~~~~-~~i~~~l~~~~~~~t~i~i~H~l~~~~~ad~i~vl~~G~i~~ 531 (1224)
||+||..+. ..+.+.+.+ .|.|+|++||+.+....+ .-.+.++++..
T Consensus 667 GTs~lD~~~~~~~i~~~L~~--~g~~vl~~TH~~~l~~~~--~~~v~n~~~~~ 715 (765)
T 1ewq_A 667 GTSSLDGVAIATAVAEALHE--RRAYTLFATHYFELTALG--LPRLKNLHVAA 715 (765)
T ss_dssp TSCHHHHHHHHHHHHHHHHH--HTCEEEEECCCHHHHTCC--CTTEEEEEEEE
T ss_pred CCCCcCHHHHHHHHHHHHHh--CCCEEEEEeCCHHHHHhh--hhcceEEEEEE
Confidence 999999875 567777766 589999999998876655 22344555543
No 201
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.54 E-value=1.9e-16 Score=174.32 Aligned_cols=171 Identities=12% Similarity=0.146 Sum_probs=103.9
Q ss_pred EEEEeEEEECCCCCCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcccEEecCCCCCCcccH
Q 047171 328 IEFKDVDFSYPTRPDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFSTSI 407 (1224)
Q Consensus 328 i~~~~v~f~y~~~~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti 407 (1224)
..++||||.-+ ++.++||+||||||||||+++|.|++ |.+.++ ..++.++|++|++....-|+
T Consensus 13 ~~l~~isl~i~---~g~iigI~G~~GsGKSTl~k~L~~~l----G~~~~~----------~~~~~i~~v~~d~~~~~l~~ 75 (245)
T 2jeo_A 13 LGTENLYFQSM---RPFLIGVSGGTASGKSTVCEKIMELL----GQNEVE----------QRQRKVVILSQDRFYKVLTA 75 (245)
T ss_dssp ----------C---CSEEEEEECSTTSSHHHHHHHHHHHH----TGGGSC----------GGGCSEEEEEGGGGBCCCCH
T ss_pred eeecceeccCC---CCEEEEEECCCCCCHHHHHHHHHHHh----chhccc----------ccCCceEEEeCCcCccccCH
Confidence 46889999864 45699999999999999999999976 555444 35678999999974334589
Q ss_pred HHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCC
Q 047171 408 KENILIGKPG--ASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALD 485 (1224)
Q Consensus 408 ~~ni~~g~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~ililDE~ts~lD 485 (1224)
.+|+.+.... ....+-.. ...+.+.+..+..+.+. ....||+||+||+++ ++++.+|+++|||||....|
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~L~~l~~~~~~----~~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~ 147 (245)
T 2jeo_A 76 EQKAKALKGQYNFDHPDAFD---NDLMHRTLKNIVEGKTV----EVPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFYS 147 (245)
T ss_dssp HHHHHHHTTCCCTTSGGGBC---HHHHHHHHHHHHTTCCE----EECCEETTTTEECSS-CEEECCCSEEEEECTTTTTS
T ss_pred hHhhhhhccCCCCCCccccc---HHHHHHHHHHHHCCCCe----ecccccccccCccCc-eEEecCCCEEEEeCcccccc
Confidence 9998653211 11000000 00112223333333332 346799999999998 68899999999999988877
Q ss_pred HHHHHHHHHHHHHHcCCCeEEEEeCCcchh-hc-cCEEEEEeCceEEeecChHHHHh
Q 047171 486 AESERIVQEALDQASQGRTMIIIAHRLSTI-RK-ADLIGVLQSGRVIESGSHDVLMQ 540 (1224)
Q Consensus 486 ~~~~~~i~~~l~~~~~~~t~i~i~H~l~~~-~~-ad~i~vl~~G~i~~~g~~~~l~~ 540 (1224)
..- .+. .+.|++++||....+ +. ++.+ ++|+ +.+++.+
T Consensus 148 ~~l--------~~~-~~~~i~v~th~~~~~~r~~~r~~---~~G~-----~~e~~~~ 187 (245)
T 2jeo_A 148 QEI--------RDM-FHLRLFVDTDSDVRLSRRVLRDV---RRGR-----DLEQILT 187 (245)
T ss_dssp HHH--------HTT-CSEEEEEECCHHHHHHHHHHHHT---C--------CHHHHHH
T ss_pred HHH--------HHh-cCeEEEEECCHHHHHHHHHHHHH---HcCC-----CHHHHHH
Confidence 642 122 378999999974433 43 4434 6664 5566543
No 202
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.53 E-value=9.9e-16 Score=164.68 Aligned_cols=141 Identities=13% Similarity=0.150 Sum_probs=105.0
Q ss_pred EEEeCCcEEEEEcCCCCChHHHHHHHhcccCC--CCceEEECCccCCCCCHHHHhcceEEEecCCCCCcc-cH----HHH
Q 047171 1001 LKIEAGKTVALVGQSGSGKSTIIGLIERFYDP--QSGSVMVDERNIKSYNLRKLRSCIALVSQEPTLFAG-TI----RQN 1073 (1224)
Q Consensus 1001 l~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p--~~G~I~idG~di~~~~~~~lR~~i~~V~Qdp~LF~g-TI----reN 1073 (1224)
-..++|+.++|+||||||||||+++|.|+++| ..|.|.+++.+.+. ..++.++|++|++.+|.. |+ .||
T Consensus 11 ~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~----~e~~gi~y~fq~~~~f~~~~~~~~f~E~ 86 (219)
T 1s96_A 11 HHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRP----GEVHGEHYFFVNHDEFKEMISRDAFLEH 86 (219)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCT----TCCBTTTBEECCHHHHHHHHHTTCEEEE
T ss_pred ccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCc----ccccCceEEECCHHHHHHHHhcCHHHHH
Confidence 36789999999999999999999999999986 68999999877643 246789999999988864 34 455
Q ss_pred HccCCCC--CCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeccCCCCCHHH
Q 047171 1074 IVYGKEV--ATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSAS 1151 (1224)
Q Consensus 1074 l~~~~~~--~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll~~p~ILlLDEaTSaLD~~t 1151 (1224)
+.+.... .+.++ ++.++.+++++||| ||+.+
T Consensus 87 ~~~~~~~yg~~~~~------------------------------------------v~~~l~~G~illLD-----LD~~~ 119 (219)
T 1s96_A 87 AEVFGNYYGTSREA------------------------------------------IEQVLATGVDVFLD-----IDWQG 119 (219)
T ss_dssp EEETTEEEEEEHHH------------------------------------------HHHHHTTTCEEEEE-----CCHHH
T ss_pred HHHHhccCCCCHHH------------------------------------------HHHHHhcCCeEEEE-----ECHHH
Confidence 5443110 01111 23334456999999 99999
Q ss_pred HHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCEEEEecChhHHhh
Q 047171 1152 ENLVQEALEKMMVGRTCVVVAHRLSTIQKADNIVVIKNGKVVEQGTQSSLLS 1203 (1224)
Q Consensus 1152 e~~I~~~l~~~~~~~TvI~IaHrl~ti~~aD~I~vl~~G~Ive~Gt~~eLl~ 1203 (1224)
...+.+.+. +++|+++++|+++.+.. |+ +.+| .|+++++..
T Consensus 120 ~~~i~~~l~---~~~tI~i~th~~~~l~~--Rl--~~rG----~~~~e~i~~ 160 (219)
T 1s96_A 120 AQQIRQKMP---HARSIFILPPSKIELDR--RL--RGRG----QDSEEVIAK 160 (219)
T ss_dssp HHHHHHHCT---TCEEEEEECSSHHHHHH--HH--HTTS----CSCHHHHHH
T ss_pred HHHHHHHcc---CCEEEEEECCCHHHHHH--HH--HHcC----CCCHHHHHH
Confidence 999998875 57899999999998866 33 6677 678888754
No 203
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.52 E-value=2.2e-15 Score=191.61 Aligned_cols=157 Identities=17% Similarity=0.168 Sum_probs=103.4
Q ss_pred ccEEEEEEEEECC------CCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCH
Q 047171 976 GFIELKNVFFSYP------SRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNL 1049 (1224)
Q Consensus 976 g~I~~~~vsf~Y~------~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~ 1049 (1224)
+.|++++. ++| ...+..|++|+||++++|+.++|+|||||||||+++.+.+..-.
T Consensus 639 ~~i~i~~~--rHP~le~~~~~~~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~----------------- 699 (918)
T 3thx_B 639 RKIVIKNG--RHPVIDVLLGEQDQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIM----------------- 699 (918)
T ss_dssp CEEEEEEE--CCHHHHHHTCSCSSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHH-----------------
T ss_pred CcEEEEec--cchhhhhhhccCCceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHH-----------------
Confidence 35777764 343 11245799999999999999999999999999999998654211
Q ss_pred HHHhcceEEEecCCCCCcccHHHHHccCCCCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHH
Q 047171 1050 RKLRSCIALVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALAR 1129 (1224)
Q Consensus 1050 ~~lR~~i~~V~Qdp~LF~gTIreNl~~~~~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLAR 1129 (1224)
.+.-.+||++..-+ .+.+++. . . .++.+. +..+-+.+|+|++|+..|+|
T Consensus 700 ---aq~g~~vpa~~~~i--~~~d~i~-~--~------------ig~~d~-----------l~~~~stfs~em~~~~~il~ 748 (918)
T 3thx_B 700 ---AQIGSYVPAEEATI--GIVDGIF-T--R------------MGAADN-----------IYKGRSTFMEELTDTAEIIR 748 (918)
T ss_dssp ---HHHTCCBSSSEEEE--ECCSEEE-E--E------------C---------------------CCHHHHHHHHHHHHH
T ss_pred ---hhcCccccchhhhh--hHHHHHH-H--h------------CChHHH-----------HHHhHHHhhHHHHHHHHHHH
Confidence 01112233322100 0000110 0 0 001111 11223568999999999999
Q ss_pred HHccCCCEEEEeccCCCCCHHHHHHHH-HHHHHhc--CCCeEEEEccCchhhhhcCE
Q 047171 1130 AVLKNPMILLLDEATSALDSASENLVQ-EALEKMM--VGRTCVVVAHRLSTIQKADN 1183 (1224)
Q Consensus 1130 All~~p~ILlLDEaTSaLD~~te~~I~-~~l~~~~--~~~TvI~IaHrl~ti~~aD~ 1183 (1224)
+ +.+|+++||||||+++|+.....+. ..++.+. .|+|+|++||.++....||+
T Consensus 749 ~-a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~el~~l~~~ 804 (918)
T 3thx_B 749 K-ATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCELEKN 804 (918)
T ss_dssp H-CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHH
T ss_pred h-ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcHHHHHHHhh
Confidence 9 8999999999999999998777775 5555542 48999999999887765654
No 204
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.51 E-value=2.1e-14 Score=183.23 Aligned_cols=150 Identities=16% Similarity=0.121 Sum_probs=106.1
Q ss_pred EEEEeEEEECCCCCCCCEEEEEcCCCCcHHHHHHHH--------hcCCCCCCcEEEECCEecCCCCHHHHhcccEEecCC
Q 047171 328 IEFKDVDFSYPTRPDTPTIGLVGSSGSGKSTVISLL--------ERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQE 399 (1224)
Q Consensus 328 i~~~~v~f~y~~~~~~~~~~ivG~sGsGKSTl~~ll--------~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~ 399 (1224)
...+|++|.-+ .+++++|+|||||||||+++.+ .|.+-|.++.. ++.+.
T Consensus 650 ~v~ndisl~~~---~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~------------------~~~~d-- 706 (934)
T 3thx_A 650 FIPNDVYFEKD---KQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAE------------------VSIVD-- 706 (934)
T ss_dssp CCCEEEEEETT---TBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEE------------------EECCS--
T ss_pred eecccceeecC---CCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccccccc------------------chHHH--
Confidence 45677787653 4679999999999999999999 66665544321 11110
Q ss_pred CCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHh--ccCCCEEEE
Q 047171 400 PILFSTSIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARAL--IRDPKILLL 477 (1224)
Q Consensus 400 ~~lf~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal--~~~~~ilil 477 (1224)
.+|. .+|. .+. ....+|+|++++..+|+++ +.+|+++||
T Consensus 707 -~i~~-------~ig~-----------------~d~--------------l~~~lStf~~e~~~~a~il~~a~~~sLlLL 747 (934)
T 3thx_A 707 -CILA-------RVGA-----------------GDS--------------QLKGVSTFMAEMLETASILRSATKDSLIII 747 (934)
T ss_dssp -EEEE-------ECC----------------------------------------CHHHHHHHHHHHHHHHCCTTCEEEE
T ss_pred -HHHH-------hcCc-----------------hhh--------------HHHhHhhhHHHHHHHHHHHHhccCCcEEEE
Confidence 0111 0110 000 0134788888888888888 899999999
Q ss_pred eCCCCCCCHHHHHHH-HHHHHHHc--CCCeEEEEeCCcchhhccCEEEEEeCceEEeecChHHHH
Q 047171 478 DEATSALDAESERIV-QEALDQAS--QGRTMIIIAHRLSTIRKADLIGVLQSGRVIESGSHDVLM 539 (1224)
Q Consensus 478 DE~ts~lD~~~~~~i-~~~l~~~~--~~~t~i~i~H~l~~~~~ad~i~vl~~G~i~~~g~~~~l~ 539 (1224)
||||+++|+.....+ +..++.+. .|+|+|++||+.+....||++..+++|++...++.+++.
T Consensus 748 DEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el~~lad~~~~v~ng~v~~~~~~~~l~ 812 (934)
T 3thx_A 748 DELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTALANQIPTVNNLHVTALTTEETLT 812 (934)
T ss_dssp ESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGGGGGGGTCTTEEEEEEEEEEETTEEE
T ss_pred eCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHHHHHhcccceeEeeEEEEEecCCcEE
Confidence 999999999877666 55555543 489999999998888889999999999999888776653
No 205
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.51 E-value=2.5e-17 Score=176.66 Aligned_cols=118 Identities=16% Similarity=0.111 Sum_probs=91.2
Q ss_pred EeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcceEEEecCCCCCcccHHHHHccCC-CCC
Q 047171 1003 IEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIALVSQEPTLFAGTIRQNIVYGK-EVA 1081 (1224)
Q Consensus 1003 I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qdp~LF~gTIreNl~~~~-~~~ 1081 (1224)
.++|+++||+||||||||||+++|.|+++|. | ..+++|+||++.++.+.++|+.... ...
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~-g------------------~~~g~v~~d~~~~~~~~~~~~~~~~~~~~ 79 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQ-G------------------LPAEVVPMDGFHLDNRLLEPRGLLPRKGA 79 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHT-T------------------CCEEEEESGGGBCCHHHHGGGTCGGGTTS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc-C------------------CceEEEecCCCcCCHHHHHHhcccccCCC
Confidence 5789999999999999999999999999976 5 2588899998888888877764211 111
Q ss_pred CHHHHHHHHHHHhHHHHHHhcccc--cccccCCCCCCCChHHHHHHHHH-HHHccCCCEEEEeccC
Q 047171 1082 TEAEIRKAAVLANAHEFISSTEDG--YDTYCGERGVQLSGGQKQRIALA-RAVLKNPMILLLDEAT 1144 (1224)
Q Consensus 1082 ~deei~~al~~a~l~~~I~~lp~g--ldt~vge~G~~LSGGQrQRlaLA-RAll~~p~ILlLDEaT 1144 (1224)
..+.....+.+++..++.| +++++.+++..+|+||+||+++| |+++.++.++++|||.
T Consensus 80 -----~~~~~~~~~~~~l~~l~~~~~i~~p~~d~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~ 140 (208)
T 3c8u_A 80 -----PETFDFEGFQRLCHALKHQERVIYPLFDRARDIAIAGAAEVGPECRVAIIEGNYLLFDAPG 140 (208)
T ss_dssp -----GGGBCHHHHHHHHHHHHHCSCEEEEEEETTTTEEEEEEEEECTTCCEEEEEESSTTBCSTT
T ss_pred -----CchhhHHHHHHHHHHHhcCCceecccCCccccCCCCCceEEcCCCcEEEECCceeccCCch
Confidence 1111122334455555555 78889999999999999999998 9999999999999984
No 206
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.50 E-value=8.5e-16 Score=173.90 Aligned_cols=145 Identities=17% Similarity=0.119 Sum_probs=78.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC-CCCCCcEEEECCEecCCCCHHHHhcccEEecCCCCCC-cccHHHHHhcCCCCCCHHH
Q 047171 345 TIGLVGSSGSGKSTVISLLERF-YDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILF-STSIKENILIGKPGASMET 422 (1224)
Q Consensus 345 ~~~ivG~sGsGKSTl~~ll~~~-~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf-~~ti~~ni~~g~~~~~~~~ 422 (1224)
.++|+|+||+|||||++.|.|. ..|++| |.++|.++.. .. . ++.+++++|++.++ .-||.|+..+|......++
T Consensus 20 ~I~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~-t~-~-~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~ 95 (301)
T 2qnr_A 20 TLMVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIER-TV-Q-IEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC 95 (301)
T ss_dssp EEEEEEETTSSHHHHHHHHHC----------------------------CEEEEC---CCEEEEEEEEC-----------
T ss_pred EEEEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCC-cc-e-EeeEEEEecCCCcccCcchhhhhhhhhhcCcHHH
Confidence 6799999999999999999998 889999 8888887653 11 1 35689999987655 4589998877643110011
Q ss_pred HHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCC-CCHHHHHHHHHHHHHHc-
Q 047171 423 VVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSA-LDAESERIVQEALDQAS- 500 (1224)
Q Consensus 423 ~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~ililDE~ts~-lD~~~~~~i~~~l~~~~- 500 (1224)
... +.+++... . .....++|||||||+++|||+. ++++||||++ ||+... +.++.+.
T Consensus 96 ~~~------l~~~l~~~---~----~~~~~~~sgg~rqrv~~ara~~----ll~ldePt~~~Ld~~~~----~~l~~l~~ 154 (301)
T 2qnr_A 96 FKT------IISYIDEQ---F----ERYLHDESGLNRRHIIDNRVHC----CFYFISPFGHGLKPLDV----AFMKAIHN 154 (301)
T ss_dssp CTT------HHHHHHHH---H----HHHHHHHTSSCCTTCCCCCCCE----EEEEECSSSSSCCHHHH----HHHHHHTT
T ss_pred HHH------HHHHHHHH---H----HHHHHHhCHHhhhhhhhhhhhh----eeeeecCcccCCCHHHH----HHHHHHHh
Confidence 111 11111110 1 1223468999999999999986 9999999985 999874 3333333
Q ss_pred -CCCeEEEEeCCcch
Q 047171 501 -QGRTMIIIAHRLST 514 (1224)
Q Consensus 501 -~~~t~i~i~H~l~~ 514 (1224)
.+.++|+..|++.+
T Consensus 155 ~~~iilV~~K~Dl~~ 169 (301)
T 2qnr_A 155 KVNIVPVIAKADTLT 169 (301)
T ss_dssp TSCEEEEECCGGGSC
T ss_pred cCCEEEEEEeCCCCC
Confidence 25677778888753
No 207
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.50 E-value=3.7e-15 Score=173.45 Aligned_cols=181 Identities=13% Similarity=0.122 Sum_probs=116.1
Q ss_pred cEEEEEEEEECCCCCCccceeceeEEEeCCcE--EEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhc
Q 047171 977 FIELKNVFFSYPSRPDQMIFKGLTLKIEAGKT--VALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRS 1054 (1224)
Q Consensus 977 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~--vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~ 1054 (1224)
.+++++ +++|++ .+ |+++||+|++|+. +|||||||||||||+++|+|+. ++|.++...++...++
T Consensus 16 ~l~~~~-~~~y~~---~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~--------l~g~~~~~~~~~~~~~ 82 (427)
T 2qag_B 16 TVPLAG-HVGFDS---LP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK--------FEGEPATHTQPGVQLQ 82 (427)
T ss_dssp -CCCCC-CC-CC-----C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC--------C-------CCSSCEEE
T ss_pred eEEEee-EEEECC---ee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc--------ccCCcCCCCCccceEe
Confidence 355666 778853 34 9999999999999 9999999999999999999983 4566655444445577
Q ss_pred ceEEEecCCCCC-cccHHHHHccCCCCCCHHHHHHHHH---HHhHHHHHHhc-------ccccccc-------cCCCCCC
Q 047171 1055 CIALVSQEPTLF-AGTIRQNIVYGKEVATEAEIRKAAV---LANAHEFISST-------EDGYDTY-------CGERGVQ 1116 (1224)
Q Consensus 1055 ~i~~V~Qdp~LF-~gTIreNl~~~~~~~~deei~~al~---~a~l~~~I~~l-------p~gldt~-------vge~G~~ 1116 (1224)
.+++++|++.++ ..|+.||+.++.. .+.+..|+... ...+.+++... +..-|+. +-+.+..
T Consensus 83 ~i~~v~Q~~~l~~~ltv~D~~~~g~~-~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~ 161 (427)
T 2qag_B 83 SNTYDLQESNVRLKLTIVSTVGFGDQ-INKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHS 161 (427)
T ss_dssp EEEEEEEC--CEEEEEEEEEECCCC--CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC--
T ss_pred eEEEEeecCccccccchhhhhhhhhc-cccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCC
Confidence 899999999887 5799999998853 33332222210 11223333322 1112332 1234456
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHH-hc-CCCeEEEEccC
Q 047171 1117 LSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEK-MM-VGRTCVVVAHR 1174 (1224)
Q Consensus 1117 LSGGQrQRlaLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~-~~-~~~TvI~IaHr 1174 (1224)
|+..+ +.++|+|-.+++|+++||||..|.+.-...+.+.+++ +. .|.+++.|+.+
T Consensus 162 l~~~D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~ 218 (427)
T 2qag_B 162 LKSLD---LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTD 218 (427)
T ss_dssp -CHHH---HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC--
T ss_pred CCHHH---HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCC
Confidence 77776 7899999999999999999999998766777777775 43 47788888753
No 208
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.50 E-value=1.8e-15 Score=177.39 Aligned_cols=162 Identities=17% Similarity=0.128 Sum_probs=95.1
Q ss_pred ccEEEEeEEEECCCCCCC----CEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcccEEecCCCC
Q 047171 326 GEIEFKDVDFSYPTRPDT----PTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPI 401 (1224)
Q Consensus 326 ~~i~~~~v~f~y~~~~~~----~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~ 401 (1224)
+.|+++|++++|++.... ..++|||+||||||||++.|+|...|..| .+|.++... ....++.+++++|++.
T Consensus 10 ~~l~~~~l~~~y~~~~vl~~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~---~~~~~~~~~-~t~~~~~i~~v~q~~~ 85 (418)
T 2qag_C 10 GYVGFANLPNQVYRKSVKRGFEFTLMVVGESGLGKSTLINSLFLTDLYSPE---YPGPSHRIK-KTVQVEQSKVLIKEGG 85 (418)
T ss_dssp -----CCCCCCTTTTTCC-CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCC---CCSCC------CCEEEEEECC-----
T ss_pred CcEEEEecceeECCEEEecCCCEEEEEECCCCCcHHHHHHHHhCCCCCCCC---CCCcccCCc-cceeeeeEEEEEecCC
Confidence 458899999999754311 16899999999999999999999886655 233332211 1112356899999988
Q ss_pred CC-cccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCC---EEEE
Q 047171 402 LF-STSIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPK---ILLL 477 (1224)
Q Consensus 402 lf-~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~---ilil 477 (1224)
++ ..||.||+.++... ..++.++. +.+++.. .++.+++||++||||++++|+ +|++
T Consensus 86 ~~~~Ltv~Dt~g~~~~~-~~~~~~~~-----i~~~i~~--------------~~~~~l~qr~~IaRal~~d~~~~vlL~l 145 (418)
T 2qag_C 86 VQLLLTIVDTPGFGDAV-DNSNCWQP-----VIDYIDS--------------KFEDYLNAESRVNRRQMPDNRVQCCLYF 145 (418)
T ss_dssp -CEEEEEEECC------------CHH-----HHHHHHH--------------HHHHHTTTSCC-CCCCCCCC-CCEEEEE
T ss_pred cccceeeeechhhhhhc-cchhhHHH-----HHHHHHH--------------HHHHHHHHHHHHHHHhccCCCeeEEEEE
Confidence 77 55999999887541 11111111 1223321 234566789999999999999 9999
Q ss_pred eCCC-CCCCHHHHHHHHHHHHHHcCCCeEEEEeCCcchh
Q 047171 478 DEAT-SALDAESERIVQEALDQASQGRTMIIIAHRLSTI 515 (1224)
Q Consensus 478 DE~t-s~lD~~~~~~i~~~l~~~~~~~t~i~i~H~l~~~ 515 (1224)
|||| ++||+.....+ +.+..+.++|+|.|+.+.+
T Consensus 146 dePt~~~L~~~d~~~l----k~L~~~v~iIlVinK~Dll 180 (418)
T 2qag_C 146 IAPSGHGLKPLDIEFM----KRLHEKVNIIPLIAKADTL 180 (418)
T ss_dssp CCC-CCSCCHHHHHHH----HHHTTTSEEEEEEESTTSS
T ss_pred ecCcccCCCHHHHHHH----HHHhccCcEEEEEEcccCc
Confidence 9999 69998764333 3344578999999987654
No 209
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.49 E-value=6.7e-15 Score=185.80 Aligned_cols=166 Identities=14% Similarity=0.124 Sum_probs=109.9
Q ss_pred ccEEEEEEEEECCCC----CCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCC-CCceEEECCccCCCCCHH
Q 047171 976 GFIELKNVFFSYPSR----PDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDP-QSGSVMVDERNIKSYNLR 1050 (1224)
Q Consensus 976 g~I~~~~vsf~Y~~~----~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p-~~G~I~idG~di~~~~~~ 1050 (1224)
+.|++++. ++|-- ++..+++|+||+ ++|+.++|+|||||||||+++++.|+.-+ ..|. .+..
T Consensus 576 ~~i~i~~~--rHP~le~~~~~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G~------~vpa---- 642 (800)
T 1wb9_A 576 PGIRITEG--RHPVVEQVLNEPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIGS------YVPA---- 642 (800)
T ss_dssp SCEEEEEE--CCTTHHHHCSSCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTC------CBSS----
T ss_pred CCEEEEec--cccEEEccCCCceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcCc------ccch----
Confidence 35777765 34421 235689999999 99999999999999999999999997532 2231 1111
Q ss_pred HHhcceEEEecCCCCCc-ccHHHHHccCCCCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHH
Q 047171 1051 KLRSCIALVSQEPTLFA-GTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALAR 1129 (1224)
Q Consensus 1051 ~lR~~i~~V~Qdp~LF~-gTIreNl~~~~~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLAR 1129 (1224)
-+.++++++| +|. -++.||+..+ -+.+|+|+++ ++.+.
T Consensus 643 -~~~~i~~~~~---i~~~~~~~d~l~~~------------------------------------~stf~~e~~~-~~~il 681 (800)
T 1wb9_A 643 -QKVEIGPIDR---IFTRVGAADDLASG------------------------------------RSTFMVEMTE-TANIL 681 (800)
T ss_dssp -SEEEECCCCE---EEEEEC-----------------------------------------------CHHHHHH-HHHHH
T ss_pred -hcccceeHHH---HHhhCCHHHHHHhh------------------------------------hhhhhHHHHH-HHHHH
Confidence 1245666665 333 2444443211 1236777665 44444
Q ss_pred HHccCCCEEEEeccCCCCCHHHHHHH-HHHHHHhc--CCCeEEEEccCchhhhhcCEEEEEeCCEEEEe
Q 047171 1130 AVLKNPMILLLDEATSALDSASENLV-QEALEKMM--VGRTCVVVAHRLSTIQKADNIVVIKNGKVVEQ 1195 (1224)
Q Consensus 1130 All~~p~ILlLDEaTSaLD~~te~~I-~~~l~~~~--~~~TvI~IaHrl~ti~~aD~I~vl~~G~Ive~ 1195 (1224)
..+.+|+++||||||+++|+.....+ ++.++.+. .++|+|++||.++....||++..+++|++...
T Consensus 682 ~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~el~~l~d~~~~v~n~~~~~~ 750 (800)
T 1wb9_A 682 HNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKMEGVANVHLDAL 750 (800)
T ss_dssp HHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHHSTTEEEEEEEEE
T ss_pred HhccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEEeCCHHHHHHhhhhhceEEEEEEEE
Confidence 56899999999999999998654443 66666554 38999999999988777888777777776543
No 210
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.49 E-value=2.4e-14 Score=154.57 Aligned_cols=151 Identities=15% Similarity=0.101 Sum_probs=98.2
Q ss_pred cceeceeE-EEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcceEEEecCCCCCcccHHH
Q 047171 994 MIFKGLTL-KIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIALVSQEPTLFAGTIRQ 1072 (1224)
Q Consensus 994 ~vL~~isl-~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qdp~LF~gTIre 1072 (1224)
+.|+++.. .+++|+.++|+||+||||||+++.+++ .+..+.++++..+ ..+.+.+ ++
T Consensus 7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~~~~v~~i~~~~--~~~~~~~------------------~~ 64 (220)
T 2cvh_A 7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LSGKKVAYVDTEG--GFSPERL------------------VQ 64 (220)
T ss_dssp HHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HHCSEEEEEESSC--CCCHHHH------------------HH
T ss_pred HHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--HcCCcEEEEECCC--CCCHHHH------------------HH
Confidence 46777776 799999999999999999999999999 4334445554432 1122222 22
Q ss_pred HHccCCCCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChH--HHHHHHHHHHHccC-CCEEEEeccCCCCCH
Q 047171 1073 NIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGG--QKQRIALARAVLKN-PMILLLDEATSALDS 1149 (1224)
Q Consensus 1073 Nl~~~~~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGG--QrQRlaLARAll~~-p~ILlLDEaTSaLD~ 1149 (1224)
..... ..+.+++ ...+ .+. .+|++ |+|+++.+|+++++ |+++|+||||+.+|.
T Consensus 65 ~~~~~--~~~~~~~------------~~~~------~~~----~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~ 120 (220)
T 2cvh_A 65 MAETR--GLNPEEA------------LSRF------ILF----TPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRA 120 (220)
T ss_dssp HHHTT--TCCHHHH------------HHHE------EEE----CCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTG
T ss_pred HHHhc--CCChHHH------------hhcE------EEE----ecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhh
Confidence 11110 1112211 1111 111 23344 47899999999986 999999999999997
Q ss_pred HHH--------HHHHHHHHHhcC--CCeEEEEccCch-------------hhh-hcCEEEEEeCC
Q 047171 1150 ASE--------NLVQEALEKMMV--GRTCVVVAHRLS-------------TIQ-KADNIVVIKNG 1190 (1224)
Q Consensus 1150 ~te--------~~I~~~l~~~~~--~~TvI~IaHrl~-------------ti~-~aD~I~vl~~G 1190 (1224)
..+ ..+.+.|+++.+ ++|+|+++|... .+. .||+|++|+..
T Consensus 121 ~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 121 EENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp GGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence 543 234444555543 889999999865 344 49999999754
No 211
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.48 E-value=7.4e-15 Score=169.06 Aligned_cols=121 Identities=26% Similarity=0.332 Sum_probs=88.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCC-CcEEEECCEecCCCCHHHHhcccEEecCCCCCCcccHHHHHhcCCCCCCHHHH
Q 047171 345 TIGLVGSSGSGKSTVISLLERFYDPV-KGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFSTSIKENILIGKPGASMETV 423 (1224)
Q Consensus 345 ~~~ivG~sGsGKSTl~~ll~~~~~~~-~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~g~~~~~~~~~ 423 (1224)
.++|+|||||||||++++|+|+++|+ +|.|...+.++ ++. ++...++++|.+.-.. ..+..+
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~-e~~---~~~~~~~v~q~~~~~~------------~~~~~~- 187 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPI-EFV---HESKKCLVNQREVHRD------------TLGFSE- 187 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSC-CSC---CCCSSSEEEEEEBTTT------------BSCHHH-
T ss_pred EEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcH-Hhh---hhccccceeeeeeccc------------cCCHHH-
Confidence 89999999999999999999999997 56665433222 221 2234455666432110 011111
Q ss_pred HHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCC
Q 047171 424 VKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQASQGR 503 (1224)
Q Consensus 424 ~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~ 503 (1224)
+|||||..+|+++++|||| |.++.+.+.++ ...|+
T Consensus 188 ---------------------------------------~La~aL~~~PdvillDEp~---d~e~~~~~~~~---~~~G~ 222 (356)
T 3jvv_A 188 ---------------------------------------ALRSALREDPDIILVGEMR---DLETIRLALTA---AETGH 222 (356)
T ss_dssp ---------------------------------------HHHHHTTSCCSEEEESCCC---SHHHHHHHHHH---HHTTC
T ss_pred ---------------------------------------HHHHHhhhCcCEEecCCCC---CHHHHHHHHHH---HhcCC
Confidence 9999999999999999999 77775554443 44699
Q ss_pred eEEEEeCCcchhhccCEEEEEeCc
Q 047171 504 TMIIIAHRLSTIRKADLIGVLQSG 527 (1224)
Q Consensus 504 t~i~i~H~l~~~~~ad~i~vl~~G 527 (1224)
|+++++|+.+.+..+||+++|..|
T Consensus 223 ~vl~t~H~~~~~~~~dRli~l~~~ 246 (356)
T 3jvv_A 223 LVFGTLHTTSAAKTIDRVVDVFPA 246 (356)
T ss_dssp EEEEEESCSSHHHHHHHHHHTSCH
T ss_pred EEEEEEccChHHHHHHHHhhhcCc
Confidence 999999999999889999988655
No 212
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.48 E-value=6.9e-14 Score=157.05 Aligned_cols=151 Identities=16% Similarity=0.145 Sum_probs=100.6
Q ss_pred EEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcceEEEecCCCCCcccHHHHHc-cCCCC
Q 047171 1002 KIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIALVSQEPTLFAGTIRQNIV-YGKEV 1080 (1224)
Q Consensus 1002 ~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qdp~LF~gTIreNl~-~~~~~ 1080 (1224)
.+++|+.++|+||+|||||||++.+++... .|.+. .|.+... +..+.|++.+... ..+..++. ++. .
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~--~g~~~-~g~~~~~------~~~v~~~~~e~~~--~~~~~r~~~~g~-~ 93 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA--GGPDL-LEVGELP------TGPVIYLPAEDPP--TAIHHRLHALGA-H 93 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH--TCCCT-TCCCCCC------CCCEEEEESSSCH--HHHHHHHHHHHT-T
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh--cCCCc-CCCccCC------CccEEEEECCCCH--HHHHHHHHHHHh-h
Confidence 478999999999999999999999998764 57763 4554321 3457888776543 22333332 221 1
Q ss_pred CCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeccCC--CCCHHHH---HHH
Q 047171 1081 ATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATS--ALDSASE---NLV 1155 (1224)
Q Consensus 1081 ~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll~~p~ILlLDEaTS--aLD~~te---~~I 1155 (1224)
..+++..+.++. + ++....+.....||+||+|++ |+++++|+++|+||||+ ++|.... ..+
T Consensus 94 ~~~~~~~~~~~~---------l--~l~~~~~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~ 159 (279)
T 1nlf_A 94 LSAEERQAVADG---------L--LIQPLIGSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQV 159 (279)
T ss_dssp SCHHHHHHHHHH---------E--EECCCTTSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHH
T ss_pred cChhhhhhccCc---------e--EEeecCCCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHH
Confidence 233322222221 1 233344556778999998865 68899999999999999 9998544 667
Q ss_pred HHHHHHhc--CCCeEEEEccCchhh
Q 047171 1156 QEALEKMM--VGRTCVVVAHRLSTI 1178 (1224)
Q Consensus 1156 ~~~l~~~~--~~~TvI~IaHrl~ti 1178 (1224)
.+.|.++. .++|||+|+|.....
T Consensus 160 ~~~L~~l~~~~g~tvi~i~H~~~~~ 184 (279)
T 1nlf_A 160 IGRMEAIAADTGCSIVFLHHASKGA 184 (279)
T ss_dssp HHHHHHHHHHHCCEEEEEEEC----
T ss_pred HHHHHHHHHHcCCEEEEEecCCCcc
Confidence 77777664 389999999987654
No 213
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.48 E-value=2.1e-16 Score=180.48 Aligned_cols=153 Identities=18% Similarity=0.132 Sum_probs=110.4
Q ss_pred cEEEEEcCCCCChHHHHHHHhccc--------CCCCceEEECCccCCCCC---------------HHHHhcceEEE---e
Q 047171 1007 KTVALVGQSGSGKSTIIGLIERFY--------DPQSGSVMVDERNIKSYN---------------LRKLRSCIALV---S 1060 (1224)
Q Consensus 1007 e~vaIVG~SGsGKSTL~~lL~rl~--------~p~~G~I~idG~di~~~~---------------~~~lR~~i~~V---~ 1060 (1224)
+.++|+|+|||||||+++.|+|++ .|+.|+|.|||.++...+ ...+++.++++ +
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~~ 84 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNL 84 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhHH
Confidence 579999999999999999999998 789999999999987763 34678889988 7
Q ss_pred cCCC-CCcccHHHHHccCCCCCCHHHHHHHH-HHHhHHHHHHhcccccccccCCC-----CCCCChHHHHHHHHHHHHcc
Q 047171 1061 QEPT-LFAGTIRQNIVYGKEVATEAEIRKAA-VLANAHEFISSTEDGYDTYCGER-----GVQLSGGQKQRIALARAVLK 1133 (1224)
Q Consensus 1061 Qdp~-LF~gTIreNl~~~~~~~~deei~~al-~~a~l~~~I~~lp~gldt~vge~-----G~~LSGGQrQRlaLARAll~ 1133 (1224)
|++. .|+.++.||+.++.| ..+.+.. ......+. ..+ ++.-+.++-. -.+||+||+||.+.+|+++.
T Consensus 85 q~~~~~~~~~v~E~~~l~~p----~~~~~~~~~~~~~~~~-~~l-~~~l~~vd~~~~~~~~~~ls~g~~Q~~~ad~ill~ 158 (318)
T 1nij_A 85 DKGNIQFDRLVIECTGMADP----GPIIQTFFSHEVLCQR-YLL-DGVIALVDAVHADEQMNQFTIAQSQVGYADRILLT 158 (318)
T ss_dssp HHTSCCCSEEEEEEETTCCH----HHHHHHHHHSHHHHHH-EEE-EEEEEEEETTTHHHHHHHCHHHHHHHHTCSEEEEE
T ss_pred hcCCCCCCEEEEeCCCCCCH----HHHHHHHhcCccccCe-EEE-CCEEEEEEHHHHHHHHhhchHHHHHHHhCCEEEEE
Confidence 8876 468899999987743 2222221 00000000 000 0111222110 01589999999999999999
Q ss_pred CCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCch
Q 047171 1134 NPMILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLS 1176 (1224)
Q Consensus 1134 ~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ 1176 (1224)
+|+++ ||| +.+.+.+++..++.|+++++|+..
T Consensus 159 k~dl~--de~---------~~l~~~l~~l~~~~~ii~~sh~~~ 190 (318)
T 1nij_A 159 KTDVA--GEA---------EKLHERLARINARAPVYTVTHGDI 190 (318)
T ss_dssp CTTTC--SCT---------HHHHHHHHHHCSSSCEEECCSSCC
T ss_pred CcccC--CHH---------HHHHHHHHHhCCCCeEEEecccCC
Confidence 99987 988 677788877777899999999643
No 214
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.47 E-value=2.2e-15 Score=161.59 Aligned_cols=160 Identities=14% Similarity=0.183 Sum_probs=93.0
Q ss_pred EEEEeEEEECCC-------CCCCCEEEEEcCCCCcHHHHHHHHhcCC-----CCCCcEEEE-------CCEecCCCC---
Q 047171 328 IEFKDVDFSYPT-------RPDTPTIGLVGSSGSGKSTVISLLERFY-----DPVKGNILL-------DGHKIKKLQ--- 385 (1224)
Q Consensus 328 i~~~~v~f~y~~-------~~~~~~~~ivG~sGsGKSTl~~ll~~~~-----~~~~G~i~~-------~g~~~~~~~--- 385 (1224)
|+++|++|.|+. .+++..++|+|++|||||||++.|+|.. .|+.|.+.. ++..+.+.+
T Consensus 4 l~~~~~~~~~~~~~l~~~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l~Dt~G~~ 83 (210)
T 1pui_A 4 LNYQQTHFVMSAPDIRHLPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYG 83 (210)
T ss_dssp -------CEEEESSGGGSSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEECCCCC
T ss_pred hhhhhhhheeecCCHhHCCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEEEECcCCc
Confidence 678888888842 1234589999999999999999999998 888888754 233332211
Q ss_pred --------HHHHhcccEEecCCCCCCcc-cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhccccccc-cccCCCCCCC
Q 047171 386 --------LKWLRSQMGLVNQEPILFST-SIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYET-KVGQFGVQLS 455 (1224)
Q Consensus 386 --------~~~~r~~i~~v~Q~~~lf~~-ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t-~~~~~g~~LS 455 (1224)
.+.+++.++++.|+...+++ .+..++..+ .+..+ .+ +.+++... +... .++.+...+|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~---~~~~~-~~------~~~~~~~~--~~~~~~v~nK~D~~s 151 (210)
T 1pui_A 84 YAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHP---LKDLD-QQ------MIEWAVDS--NIAVLVLLTKADKLA 151 (210)
T ss_dssp ------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSC---CCHHH-HH------HHHHHHHT--TCCEEEEEECGGGSC
T ss_pred ccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCC---CchhH-HH------HHHHHHHc--CCCeEEEEecccCCC
Confidence 12344455555554333222 222233222 12211 01 11222221 3332 3477777899
Q ss_pred hHHHHH-HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 047171 456 GGQKQR-IAIARALIRDPKILLLDEATSALDAESERIVQEALDQA 499 (1224)
Q Consensus 456 gGq~qr-iaiARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~ 499 (1224)
+||||| +..||+++.+|+++++|||||++|.+....+.+.|.+.
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~ 196 (210)
T 1pui_A 152 SGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTW 196 (210)
T ss_dssp HHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHH
Confidence 999999 89999999999999999999999999888888888764
No 215
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.46 E-value=3.3e-16 Score=178.93 Aligned_cols=153 Identities=18% Similarity=0.168 Sum_probs=109.1
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcCC--------CCCCcEEEECCEecCCCC---------------HHHHhcccEEe---c
Q 047171 344 PTIGLVGSSGSGKSTVISLLERFY--------DPVKGNILLDGHKIKKLQ---------------LKWLRSQMGLV---N 397 (1224)
Q Consensus 344 ~~~~ivG~sGsGKSTl~~ll~~~~--------~~~~G~i~~~g~~~~~~~---------------~~~~r~~i~~v---~ 397 (1224)
++++|+|+||||||||++.|+|++ .|+.|+|.+||.++...+ ...+++.++++ +
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~~ 84 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNL 84 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhHH
Confidence 478999999999999999999998 789999999999987653 34567789988 6
Q ss_pred CCCCC-CcccHHHHHhcCCCCCCHHHHHHHH-HHhcHHHHHHhccccccccccC-----CCCCCChHHHHHHHHHHHhcc
Q 047171 398 QEPIL-FSTSIKENILIGKPGASMETVVKAA-QAANVHDFIMKLNDGYETKVGQ-----FGVQLSGGQKQRIAIARALIR 470 (1224)
Q Consensus 398 Q~~~l-f~~ti~~ni~~g~~~~~~~~~~~~~-~~~~~~~~i~~l~~g~~t~~~~-----~g~~LSgGq~qriaiARal~~ 470 (1224)
|++.+ |+.++.||+.++.|. .+.+.. ......+ -..+. +.-+.++- .-.+||||||||+..+++++.
T Consensus 85 q~~~~~~~~~v~E~~~l~~p~----~~~~~~~~~~~~~~-~~~l~-~~l~~vd~~~~~~~~~~ls~g~~Q~~~ad~ill~ 158 (318)
T 1nij_A 85 DKGNIQFDRLVIECTGMADPG----PIIQTFFSHEVLCQ-RYLLD-GVIALVDAVHADEQMNQFTIAQSQVGYADRILLT 158 (318)
T ss_dssp HHTSCCCSEEEEEEETTCCHH----HHHHHHHHSHHHHH-HEEEE-EEEEEEETTTHHHHHHHCHHHHHHHHTCSEEEEE
T ss_pred hcCCCCCCEEEEeCCCCCCHH----HHHHHHhcCccccC-eEEEC-CEEEEEEHHHHHHHHhhchHHHHHHHhCCEEEEE
Confidence 88764 677999999887542 222111 0000000 00110 11111111 112689999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCCcc
Q 047171 471 DPKILLLDEATSALDAESERIVQEALDQASQGRTMIIIAHRLS 513 (1224)
Q Consensus 471 ~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~i~H~l~ 513 (1224)
+|+++ ||| +.+.+.++++.++.|+++++|+..
T Consensus 159 k~dl~--de~---------~~l~~~l~~l~~~~~ii~~sh~~~ 190 (318)
T 1nij_A 159 KTDVA--GEA---------EKLHERLARINARAPVYTVTHGDI 190 (318)
T ss_dssp CTTTC--SCT---------HHHHHHHHHHCSSSCEEECCSSCC
T ss_pred CcccC--CHH---------HHHHHHHHHhCCCCeEEEecccCC
Confidence 99987 998 667777777777899999999743
No 216
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.45 E-value=4.5e-15 Score=159.51 Aligned_cols=140 Identities=14% Similarity=0.144 Sum_probs=101.9
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHhcCCCC--CCcEEEECCEecCCCCHHHHhcccEEecCCCCCCcc-cH----HHHHhc
Q 047171 341 PDTPTIGLVGSSGSGKSTVISLLERFYDP--VKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFST-SI----KENILI 413 (1224)
Q Consensus 341 ~~~~~~~ivG~sGsGKSTl~~ll~~~~~~--~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~-ti----~~ni~~ 413 (1224)
++++.++|+||||||||||+++|+|+++| ..|+|.+.+.+.+. ..++.++|++|++.+|.. ++ .||+.+
T Consensus 14 ~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~----~e~~gi~y~fq~~~~f~~~~~~~~f~E~~~~ 89 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRP----GEVHGEHYFFVNHDEFKEMISRDAFLEHAEV 89 (219)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCT----TCCBTTTBEECCHHHHHHHHHTTCEEEEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCc----ccccCceEEECCHHHHHHHHhcCHHHHHHHH
Confidence 56789999999999999999999999986 78999998876543 235679999999887765 44 355443
Q ss_pred CCCCCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHH
Q 047171 414 GKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQ 493 (1224)
Q Consensus 414 g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~ililDE~ts~lD~~~~~~i~ 493 (1224)
.... |.+ .+++ ++.++..++++||| ||+.+...+.
T Consensus 90 ~~~~-------------------------yg~------------~~~~---v~~~l~~G~illLD-----LD~~~~~~i~ 124 (219)
T 1s96_A 90 FGNY-------------------------YGT------------SREA---IEQVLATGVDVFLD-----IDWQGAQQIR 124 (219)
T ss_dssp TTEE-------------------------EEE------------EHHH---HHHHHTTTCEEEEE-----CCHHHHHHHH
T ss_pred Hhcc-------------------------CCC------------CHHH---HHHHHhcCCeEEEE-----ECHHHHHHHH
Confidence 2110 000 0111 23334457999999 9999999998
Q ss_pred HHHHHHcCCCeEEEEeCCcchhhccCEEEEEeCceEEeecChHHHHh
Q 047171 494 EALDQASQGRTMIIIAHRLSTIRKADLIGVLQSGRVIESGSHDVLMQ 540 (1224)
Q Consensus 494 ~~l~~~~~~~t~i~i~H~l~~~~~ad~i~vl~~G~i~~~g~~~~l~~ 540 (1224)
+.+. +++|+++++|+++.+.. |+ +..| .++.+++.+
T Consensus 125 ~~l~---~~~tI~i~th~~~~l~~--Rl--~~rG----~~~~e~i~~ 160 (219)
T 1s96_A 125 QKMP---HARSIFILPPSKIELDR--RL--RGRG----QDSEEVIAK 160 (219)
T ss_dssp HHCT---TCEEEEEECSSHHHHHH--HH--HTTS----CSCHHHHHH
T ss_pred HHcc---CCEEEEEECCCHHHHHH--HH--HHcC----CCCHHHHHH
Confidence 8775 58899999999998876 32 5666 567777654
No 217
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.45 E-value=1.3e-15 Score=160.94 Aligned_cols=139 Identities=16% Similarity=0.087 Sum_probs=91.1
Q ss_pred EEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcceEEEecCCCCCcccHHHHHccCCCCC
Q 047171 1002 KIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIALVSQEPTLFAGTIRQNIVYGKEVA 1081 (1224)
Q Consensus 1002 ~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qdp~LF~gTIreNl~~~~~~~ 1081 (1224)
.+++|+.++|+|+|||||||++++|.+. |..|.|.+||.++..... -++.++|++|++. .+.|+.+|+.+...
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~~~~~~--~~~~~~~~~~~~~-~~~~v~~~l~~~~~-- 77 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDLWGYIK--HGRIDPWLPQSHQ-QNRMIMQIAADVAG-- 77 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHHHHTCC--SSCCCTTSSSHHH-HHHHHHHHHHHHHH--
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccchhhhhh--cccccCCccchhh-hhHHHHHHHHHHHH--
Confidence 4789999999999999999999999998 678999999987643211 1345788888765 45688888754210
Q ss_pred CHHHHHHHHHHHhHHHHHHhcc--cccccc--cCCCCCCCChHHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHH
Q 047171 1082 TEAEIRKAAVLANAHEFISSTE--DGYDTY--CGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQE 1157 (1224)
Q Consensus 1082 ~deei~~al~~a~l~~~I~~lp--~gldt~--vge~G~~LSGGQrQRlaLARAll~~p~ILlLDEaTSaLD~~te~~I~~ 1157 (1224)
.. . ..+....+.... .+++.. .+.....+|+||+||+++||++.++|+++ +|++..+.+.+
T Consensus 78 ----~~--~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~ 142 (191)
T 1zp6_A 78 ----RY--A-KEGYFVILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHS 142 (191)
T ss_dssp ----HH--H-HTSCEEEECSCCCTTTTHHHHTTCSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHH
T ss_pred ----HH--h-ccCCeEEEeccCcHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHH
Confidence 00 0 000000000000 011100 02233569999999999999999999987 57777766666
Q ss_pred HHHHh
Q 047171 1158 ALEKM 1162 (1224)
Q Consensus 1158 ~l~~~ 1162 (1224)
.++.+
T Consensus 143 ~~~~l 147 (191)
T 1zp6_A 143 QFADL 147 (191)
T ss_dssp HTTCC
T ss_pred HHhcc
Confidence 66543
No 218
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.42 E-value=1.1e-13 Score=169.10 Aligned_cols=77 Identities=17% Similarity=0.286 Sum_probs=71.7
Q ss_pred CCCC-ChHHHHHHHHHHHhccCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCCcchhhccCEEEEEeCc
Q 047171 451 GVQL-SGGQKQRIAIARALIRDP--KILLLDEATSALDAESERIVQEALDQASQGRTMIIIAHRLSTIRKADLIGVLQSG 527 (1224)
Q Consensus 451 g~~L-SgGq~qriaiARal~~~~--~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~i~H~l~~~~~ad~i~vl~~G 527 (1224)
..+| ||||||||+|||||+.+| ++|||||||++||+.+...+.+.|.++.+|+|+|+|||+++.+..||++++|++|
T Consensus 394 ~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~~~~vi~itH~~~~~~~~d~~~~~~~~ 473 (517)
T 4ad8_A 394 LSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAARAHHHYKVEKQ 473 (517)
T ss_dssp SSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHHHSEEEEECCCHHHHHHSSEEEEEECC
T ss_pred HHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEEecc
Confidence 4567 999999999999999999 9999999999999999999999998877789999999999988889999999655
No 219
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.41 E-value=1.4e-13 Score=149.92 Aligned_cols=155 Identities=14% Similarity=0.023 Sum_probs=102.4
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhc---ccEEecCCCCCCcccHHHHHhcCCCC
Q 047171 341 PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRS---QMGLVNQEPILFSTSIKENILIGKPG 417 (1224)
Q Consensus 341 ~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~---~i~~v~Q~~~lf~~ti~~ni~~g~~~ 417 (1224)
+++..++|+||||||||||++.|++...+.+|.+.+.+.+. +.+.+++ .+++.+|+... +++.+-..
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~---~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~- 90 (235)
T 2w0m_A 21 PQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEE---SRDSIIRQAKQFNWDFEEYIE------KKLIIIDA- 90 (235)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSS---CHHHHHHHHHHTTCCCGGGBT------TTEEEEEC-
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEccc---CHHHHHHHHHHhcchHHHHhh------CCEEEEec-
Confidence 35679999999999999999999998888888887755433 2333222 34444433210 01111000
Q ss_pred CCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCC--EEEEeCCCCCC--CHHHHHHHH
Q 047171 418 ASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPK--ILLLDEATSAL--DAESERIVQ 493 (1224)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~--ililDE~ts~l--D~~~~~~i~ 493 (1224)
... . . + ...+- ...|.+|.++...+.+...+|+ ++++||||+.+ |+.....+.
T Consensus 91 ~~~-~-------------~-----~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~ 147 (235)
T 2w0m_A 91 LMK-E-------------K-----E-DQWSL---VNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKIS 147 (235)
T ss_dssp CC------------------------CTTBC---SSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHH
T ss_pred ccc-c-------------c-----C-ceeee---cCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHH
Confidence 000 0 0 0 00011 2348999999888887778999 99999999888 988777777
Q ss_pred HHHHHHc--CCCeEEEEeCCc--------chhhc-cCEEEEEeCce
Q 047171 494 EALDQAS--QGRTMIIIAHRL--------STIRK-ADLIGVLQSGR 528 (1224)
Q Consensus 494 ~~l~~~~--~~~t~i~i~H~l--------~~~~~-ad~i~vl~~G~ 528 (1224)
+.|.++. .|.|+|+++|.. +.+.+ ||+|++|++.+
T Consensus 148 ~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~~ 193 (235)
T 2w0m_A 148 YYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRRMI 193 (235)
T ss_dssp HHHHHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEEEE
T ss_pred HHHHHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEEEe
Confidence 7777653 488999999998 44665 99999998653
No 220
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.39 E-value=1.2e-15 Score=163.43 Aligned_cols=136 Identities=16% Similarity=0.150 Sum_probs=96.5
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcccEEecCCCCCCcccHHHHHhc-CCCCCCH
Q 047171 342 DTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFSTSIKENILI-GKPGASM 420 (1224)
Q Consensus 342 ~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~-g~~~~~~ 420 (1224)
++++++|+||||||||||+++|+|+++|+ | ..+|+|+|+.+.++.+..+|+.. .....
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~~~~~~~-g------------------~~~g~v~~d~~~~~~~~~~~~~~~~~~~~-- 79 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLAAALSAQ-G------------------LPAEVVPMDGFHLDNRLLEPRGLLPRKGA-- 79 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHHHHT-T------------------CCEEEEESGGGBCCHHHHGGGTCGGGTTS--
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhc-C------------------CceEEEecCCCcCCHHHHHHhcccccCCC--
Confidence 45689999999999999999999999976 4 14788888888787777777531 11111
Q ss_pred HHHHHHHHHhcHHHHHHhcccc--ccccccCCCCCCChHHHHHHHHH-HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 047171 421 ETVVKAAQAANVHDFIMKLNDG--YETKVGQFGVQLSGGQKQRIAIA-RALIRDPKILLLDEATSALDAESERIVQEALD 497 (1224)
Q Consensus 421 ~~~~~~~~~~~~~~~i~~l~~g--~~t~~~~~g~~LSgGq~qriaiA-Ral~~~~~ililDE~ts~lD~~~~~~i~~~l~ 497 (1224)
..+.....+.+++..++.| +++.+.+++..+||||+||+++| |+++.++.++++|||... .+.
T Consensus 80 ---~~~~~~~~~~~~l~~l~~~~~i~~p~~d~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~~~-----------~l~ 145 (208)
T 3c8u_A 80 ---PETFDFEGFQRLCHALKHQERVIYPLFDRARDIAIAGAAEVGPECRVAIIEGNYLLFDAPGWR-----------DLT 145 (208)
T ss_dssp ---GGGBCHHHHHHHHHHHHHCSCEEEEEEETTTTEEEEEEEEECTTCCEEEEEESSTTBCSTTGG-----------GGG
T ss_pred ---CchhhHHHHHHHHHHHhcCCceecccCCccccCCCCCceEEcCCCcEEEECCceeccCCchhH-----------HHH
Confidence 1111122334556666655 67788999999999999999998 999999999889998421 111
Q ss_pred HHcCCCeEEEEeCCcch
Q 047171 498 QASQGRTMIIIAHRLST 514 (1224)
Q Consensus 498 ~~~~~~t~i~i~H~l~~ 514 (1224)
.. -.++|.+.+..+.
T Consensus 146 ~~--~d~~i~vd~~~~~ 160 (208)
T 3c8u_A 146 AI--WDVSIRLEVPMAD 160 (208)
T ss_dssp GT--CSEEEEECCCHHH
T ss_pred Hh--cCEEEEEeCCHHH
Confidence 11 1367777777665
No 221
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.38 E-value=2.1e-13 Score=173.49 Aligned_cols=151 Identities=13% Similarity=0.126 Sum_probs=96.0
Q ss_pred cEEEEeEEEECCCCCCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcccEEecCCCCCCccc
Q 047171 327 EIEFKDVDFSYPTRPDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFSTS 406 (1224)
Q Consensus 327 ~i~~~~v~f~y~~~~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~t 406 (1224)
....+||+|.-+ ++++++|+|||||||||+++.+.+..- +.+.-.+||++..-+ .
T Consensus 660 ~~V~ndvsl~~~---~g~i~~ItGPNGaGKSTlLr~i~~i~~--------------------~aq~g~~vpa~~~~i--~ 714 (918)
T 3thx_B 660 QYVPNNTDLSED---SERVMIITGPNMGGKSSYIKQVALITI--------------------MAQIGSYVPAEEATI--G 714 (918)
T ss_dssp SSCCEEEEECTT---SCCEEEEESCCCHHHHHHHHHHHHHHH--------------------HHHHTCCBSSSEEEE--E
T ss_pred ceecccccccCC---CCeEEEEECCCCCchHHHHHHHHHHHH--------------------HhhcCccccchhhhh--h
Confidence 345678888643 467999999999999999999865311 001112333322100 0
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCH
Q 047171 407 IKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDA 486 (1224)
Q Consensus 407 i~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~ililDE~ts~lD~ 486 (1224)
+.+++ |.. + |....+..+.+++|+|++|+..|+|+ +.+|+++||||||+++|+
T Consensus 715 ~~d~i-~~~-----------------------i--g~~d~l~~~~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD~ 767 (918)
T 3thx_B 715 IVDGI-FTR-----------------------M--GAADNIYKGRSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTST 767 (918)
T ss_dssp CCSEE-EEE-----------------------C------------CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSCH
T ss_pred HHHHH-HHh-----------------------C--ChHHHHHHhHHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCH
Confidence 00111 000 0 11111223346789999999999999 799999999999999999
Q ss_pred HHHHHHH-HHHHHH-c-CCCeEEEEeCCcchhhccCEEEE-EeCceE
Q 047171 487 ESERIVQ-EALDQA-S-QGRTMIIIAHRLSTIRKADLIGV-LQSGRV 529 (1224)
Q Consensus 487 ~~~~~i~-~~l~~~-~-~~~t~i~i~H~l~~~~~ad~i~v-l~~G~i 529 (1224)
.....+. ..++.+ . .|.|+|++||+++....||+.-- +.++++
T Consensus 768 ~~~~~i~~~il~~L~~~~g~tvl~vTH~~el~~l~~~~~~~v~n~~~ 814 (918)
T 3thx_B 768 HDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCELEKNYSHQVGNYHM 814 (918)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHHTTTTEEEEEE
T ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEeCcHHHHHHHhhcccceEEEEE
Confidence 8877665 555554 2 58999999999988776776431 445554
No 222
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.38 E-value=3.9e-13 Score=147.43 Aligned_cols=146 Identities=16% Similarity=0.259 Sum_probs=92.2
Q ss_pred EEeCCcEEEEEcCCCCChHHHHHHHhc--ccCC-----CCceEEECCccCCC-CCHHHHhcceEEEecCCCCCcccHHHH
Q 047171 1002 KIEAGKTVALVGQSGSGKSTIIGLIER--FYDP-----QSGSVMVDERNIKS-YNLRKLRSCIALVSQEPTLFAGTIRQN 1073 (1224)
Q Consensus 1002 ~I~~Ge~vaIVG~SGsGKSTL~~lL~r--l~~p-----~~G~I~idG~di~~-~~~~~lR~~i~~V~Qdp~LF~gTIreN 1073 (1224)
.+++|+.++|+||+|||||||++.|++ ..+| ..|.+++++.+... -.+..+++++++.+|+ +.+|
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~-------~~~~ 92 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSD-------VLDN 92 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHH-------HHHT
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHH-------HhhC
Confidence 589999999999999999999999999 4554 57889999876311 1133455567776654 5566
Q ss_pred HccCCCCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHc--cCCCEEEEeccCCCCCHH-
Q 047171 1074 IVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVL--KNPMILLLDEATSALDSA- 1150 (1224)
Q Consensus 1074 l~~~~~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll--~~p~ILlLDEaTSaLD~~- 1150 (1224)
+.+..+ .+.++..+.+ .-+++++ .+|+++++||||+.+|.+
T Consensus 93 ~~~~~~-~~~~~~~~~~-----------------------------------~~~~~~~~~~~~~lliiD~~~~~~~~~~ 136 (243)
T 1n0w_A 93 VAYARA-FNTDHQTQLL-----------------------------------YQASAMMVESRYALLIVDSATALYRTDY 136 (243)
T ss_dssp EEEEEC-CSHHHHHHHH-----------------------------------HHHHHHHHHSCEEEEEEETSSGGGC---
T ss_pred eEEEec-CCHHHHHHHH-----------------------------------HHHHHHHhcCCceEEEEeCchHHHHHHh
Confidence 655432 2323322221 1111122 589999999999999986
Q ss_pred ------HHH-----HHHHHHHHhc--CCCeEEEEccCchhh-------------------h-hcCEEEEEeCC
Q 047171 1151 ------SEN-----LVQEALEKMM--VGRTCVVVAHRLSTI-------------------Q-KADNIVVIKNG 1190 (1224)
Q Consensus 1151 ------te~-----~I~~~l~~~~--~~~TvI~IaHrl~ti-------------------~-~aD~I~vl~~G 1190 (1224)
+++ .+.+.|.+.. .++|||+++|-.... . .||++++|+.|
T Consensus 137 ~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~ 209 (243)
T 1n0w_A 137 SGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKG 209 (243)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC-------------------------CCTTCEEEEEEEC
T ss_pred cCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEEEc
Confidence 422 2333343333 389999999965432 2 48999999865
No 223
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.36 E-value=6.5e-13 Score=149.09 Aligned_cols=149 Identities=15% Similarity=0.138 Sum_probs=96.0
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcccEEecCCCCCCcccHHHHHh-cCCCCCC
Q 047171 341 PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFSTSIKENIL-IGKPGAS 419 (1224)
Q Consensus 341 ~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~-~g~~~~~ 419 (1224)
+.+..++|+||||||||||++.+++... .|.+. .|.+... +..+.|+..+... ..+.+++. +|. +..
T Consensus 28 ~~G~i~~i~G~~GsGKTtl~~~l~~~~~--~g~~~-~g~~~~~------~~~v~~~~~e~~~--~~~~~r~~~~g~-~~~ 95 (279)
T 1nlf_A 28 VAGTVGALVSPGGAGKSMLALQLAAQIA--GGPDL-LEVGELP------TGPVIYLPAEDPP--TAIHHRLHALGA-HLS 95 (279)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHH--TCCCT-TCCCCCC------CCCEEEEESSSCH--HHHHHHHHHHHT-TSC
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHHHh--cCCCc-CCCccCC------CccEEEEECCCCH--HHHHHHHHHHHh-hcC
Confidence 4577999999999999999999998654 56653 3443311 2357777665432 22322221 221 112
Q ss_pred HHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCC--CCCHHHH---HHHHH
Q 047171 420 METVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATS--ALDAESE---RIVQE 494 (1224)
Q Consensus 420 ~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~ililDE~ts--~lD~~~~---~~i~~ 494 (1224)
..+. .+.++.+ ++....+.....||+||+|++ |+++.+|+++|+||||+ ++|.... ..+.+
T Consensus 96 ~~~~---------~~~~~~l--~l~~~~~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~ 161 (279)
T 1nlf_A 96 AEER---------QAVADGL--LIQPLIGSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIG 161 (279)
T ss_dssp HHHH---------HHHHHHE--EECCCTTSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHH
T ss_pred hhhh---------hhccCce--EEeecCCCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHH
Confidence 2211 1223333 344445667889999998875 68889999999999999 8997543 56667
Q ss_pred HHHHHc--CCCeEEEEeCCcchh
Q 047171 495 ALDQAS--QGRTMIIIAHRLSTI 515 (1224)
Q Consensus 495 ~l~~~~--~~~t~i~i~H~l~~~ 515 (1224)
.|..+. .|+|+|+++|.....
T Consensus 162 ~L~~l~~~~g~tvi~i~H~~~~~ 184 (279)
T 1nlf_A 162 RMEAIAADTGCSIVFLHHASKGA 184 (279)
T ss_dssp HHHHHHHHHCCEEEEEEEC----
T ss_pred HHHHHHHHcCCEEEEEecCCCcc
Confidence 776653 489999999987654
No 224
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.35 E-value=1.9e-13 Score=172.63 Aligned_cols=151 Identities=11% Similarity=0.123 Sum_probs=99.9
Q ss_pred cEEEEeEEEECCCCCCCCEEEEEcCCCCcHHHHHHHHhcCCCC-CCcEEEECCEecCCCCHHHHhcccEEecCCCCCCcc
Q 047171 327 EIEFKDVDFSYPTRPDTPTIGLVGSSGSGKSTVISLLERFYDP-VKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFST 405 (1224)
Q Consensus 327 ~i~~~~v~f~y~~~~~~~~~~ivG~sGsGKSTl~~ll~~~~~~-~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ 405 (1224)
...++|++|. +++.+++|+|||||||||++++++|...+ ..|. .+.. -+..++++.| +|..
T Consensus 595 ~~vlndisl~----~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G~------~vpa-----~~~~i~~~~~---i~~~ 656 (800)
T 1wb9_A 595 PFIANPLNLS----PQRRMLIITGPNMGGKSTYMRQTALIALMAYIGS------YVPA-----QKVEIGPIDR---IFTR 656 (800)
T ss_dssp CCCCEEEEEC----SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTC------CBSS-----SEEEECCCCE---EEEE
T ss_pred ceeeeccccc----CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcCc------ccch-----hcccceeHHH---HHhh
Confidence 4567889987 34679999999999999999999997432 2221 1111 1235666665 4432
Q ss_pred -cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCC
Q 047171 406 -SIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSAL 484 (1224)
Q Consensus 406 -ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~ililDE~ts~l 484 (1224)
++.||+..+ ..++|+|+++ ++.+...+.+|+++|||||++++
T Consensus 657 ~~~~d~l~~~------------------------------------~stf~~e~~~-~~~il~~a~~psLlLLDEp~~Gt 699 (800)
T 1wb9_A 657 VGAADDLASG------------------------------------RSTFMVEMTE-TANILHNATEYSLVLMDEIGRGT 699 (800)
T ss_dssp EC-----------------------------------------------CHHHHHH-HHHHHHHCCTTEEEEEESCCCCS
T ss_pred CCHHHHHHhh------------------------------------hhhhhHHHHH-HHHHHHhccCCCEEEEECCCCCC
Confidence 455554221 1235667665 44444568999999999999999
Q ss_pred CHHHHHH-HHHHHHHHc--CCCeEEEEeCCcchhhccCEEEEEeCceEEee
Q 047171 485 DAESERI-VQEALDQAS--QGRTMIIIAHRLSTIRKADLIGVLQSGRVIES 532 (1224)
Q Consensus 485 D~~~~~~-i~~~l~~~~--~~~t~i~i~H~l~~~~~ad~i~vl~~G~i~~~ 532 (1224)
|+..... ..+.++.+. .|.|+|++||+.+....||++..+++|++...
T Consensus 700 d~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~el~~l~d~~~~v~n~~~~~~ 750 (800)
T 1wb9_A 700 STYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKMEGVANVHLDAL 750 (800)
T ss_dssp SSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHHSTTEEEEEEEEE
T ss_pred ChhHHHHHHHHHHHHHHhccCCeEEEEeCCHHHHHHhhhhhceEEEEEEEE
Confidence 9865444 355666553 38999999999988777998888888887653
No 225
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.35 E-value=5.4e-13 Score=156.93 Aligned_cols=156 Identities=23% Similarity=0.296 Sum_probs=104.6
Q ss_pred eceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCC----HHH--HhcceEEEecCCCCC-ccc
Q 047171 997 KGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYN----LRK--LRSCIALVSQEPTLF-AGT 1069 (1224)
Q Consensus 997 ~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~----~~~--lR~~i~~V~Qdp~LF-~gT 1069 (1224)
+++||++++|++++|||+||||||||++.|.|++.|.+|+|.++|.|+.... +.. .|++++||+|++.++ ..|
T Consensus 284 ~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~t 363 (503)
T 2yhs_A 284 EPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASV 363 (503)
T ss_dssp CCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHHH
T ss_pred CCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHHH
Confidence 5788999999999999999999999999999999999999999988875431 223 478899999998765 568
Q ss_pred HHHHHccCCCCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCC--CCCChHHHHHHHHHHHHcc-CC-CEEEEeccCC
Q 047171 1070 IRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERG--VQLSGGQKQRIALARAVLK-NP-MILLLDEATS 1145 (1224)
Q Consensus 1070 IreNl~~~~~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G--~~LSGGQrQRlaLARAll~-~p-~ILlLDEaTS 1145 (1224)
+++|+.++..... |++ =+||. |... .++-.--+|++.++|++.. .| .+||..+||+
T Consensus 364 V~e~l~~a~~~~~--------------DvV-----LIDTa-Grl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDatt 423 (503)
T 2yhs_A 364 IFDAIQAAKARNI--------------DVL-----IADTA-GRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDAST 423 (503)
T ss_dssp HHHHHHHHHHTTC--------------SEE-----EECCC-CSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGG
T ss_pred HHHHHHHHHhcCC--------------CEE-----EEeCC-CccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcc
Confidence 9999976521100 000 01111 1100 0111223578889998764 35 3565556888
Q ss_pred CCCHHHHHHHHHHHHHhcCCCeEEEEccCchh
Q 047171 1146 ALDSASENLVQEALEKMMVGRTCVVVAHRLST 1177 (1224)
Q Consensus 1146 aLD~~te~~I~~~l~~~~~~~TvI~IaHrl~t 1177 (1224)
+.|.... .+.+.+. -+.|.+++|| ++.
T Consensus 424 Gq~al~~---ak~f~~~-~~itgvIlTK-LD~ 450 (503)
T 2yhs_A 424 GQNAVSQ---AKLFHEA-VGLTGITLTK-LDG 450 (503)
T ss_dssp THHHHHH---HHHHHHH-TCCSEEEEEC-GGG
T ss_pred cHHHHHH---HHHHHhh-cCCCEEEEEc-CCC
Confidence 8655422 2223222 3789999999 444
No 226
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.34 E-value=2.5e-12 Score=138.67 Aligned_cols=141 Identities=16% Similarity=0.078 Sum_probs=87.8
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcccEEecCCCCCCcccHHHHHhcCCCCCCH
Q 047171 341 PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFSTSIKENILIGKPGASM 420 (1224)
Q Consensus 341 ~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~g~~~~~~ 420 (1224)
+++..++|+||+|||||||++.+++ .+..+.++++..+ ..+.. .+.+.... .....
T Consensus 18 ~~G~~~~i~G~~GsGKTtl~~~l~~--~~~~~v~~i~~~~--~~~~~------------------~~~~~~~~--~~~~~ 73 (220)
T 2cvh_A 18 APGVLTQVYGPYASGKTTLALQTGL--LSGKKVAYVDTEG--GFSPE------------------RLVQMAET--RGLNP 73 (220)
T ss_dssp CTTSEEEEECSTTSSHHHHHHHHHH--HHCSEEEEEESSC--CCCHH------------------HHHHHHHT--TTCCH
T ss_pred cCCEEEEEECCCCCCHHHHHHHHHH--HcCCcEEEEECCC--CCCHH------------------HHHHHHHh--cCCCh
Confidence 4577999999999999999999999 3333444443321 11111 12211110 01111
Q ss_pred HHHHHHHHHhcHHHHHHhccccccccccCCCCCCChH--HHHHHHHHHHhccC-CCEEEEeCCCCCCCHHHH--------
Q 047171 421 ETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGG--QKQRIAIARALIRD-PKILLLDEATSALDAESE-------- 489 (1224)
Q Consensus 421 ~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgG--q~qriaiARal~~~-~~ililDE~ts~lD~~~~-------- 489 (1224)
++ +...+. + ..+|++ |+|+++.+|+++++ |+++|+||||+.+|+..+
T Consensus 74 ~~------------~~~~~~------~----~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~~~~~~~~ 131 (220)
T 2cvh_A 74 EE------------ALSRFI------L----FTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEENRSGLIAEL 131 (220)
T ss_dssp HH------------HHHHEE------E----ECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGGGSSTTHHHH
T ss_pred HH------------HhhcEE------E----EecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcCchHHHHHHH
Confidence 11 112221 1 123344 47899999999986 999999999999997432
Q ss_pred HHHHHHHHHHc--CCCeEEEEeCCcc-------------hhhc-cCEEEEEeCc
Q 047171 490 RIVQEALDQAS--QGRTMIIIAHRLS-------------TIRK-ADLIGVLQSG 527 (1224)
Q Consensus 490 ~~i~~~l~~~~--~~~t~i~i~H~l~-------------~~~~-ad~i~vl~~G 527 (1224)
..+.+.|+++. .|.|+|+++|... .+.+ ||.|++|++.
T Consensus 132 ~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 132 SRQLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred HHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence 23444455543 3889999999865 3444 9999999764
No 227
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.34 E-value=2.4e-14 Score=151.10 Aligned_cols=135 Identities=16% Similarity=0.026 Sum_probs=86.6
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcccEEecCCCCCCcccHHHHHhcCCCCCCHH
Q 047171 342 DTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFSTSIKENILIGKPGASME 421 (1224)
Q Consensus 342 ~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~g~~~~~~~ 421 (1224)
++..++|+|||||||||++++|+|. |+.|.|.++|.++..... .++.++|++|++. .+.++.+|+.+..
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~~~~~~--~~~~~~~~~~~~~-~~~~v~~~l~~~~------ 76 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDLWGYIK--HGRIDPWLPQSHQ-QNRMIMQIAADVA------ 76 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHHHHTCC--SSCCCTTSSSHHH-HHHHHHHHHHHHH------
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccchhhhhh--cccccCCccchhh-hhHHHHHHHHHHH------
Confidence 4568999999999999999999998 788999999977532211 1234688888754 3458888875421
Q ss_pred HHHHHHHHhcHHHHHHhcc--cccccc--ccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 047171 422 TVVKAAQAANVHDFIMKLN--DGYETK--VGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALD 497 (1224)
Q Consensus 422 ~~~~~~~~~~~~~~i~~l~--~g~~t~--~~~~g~~LSgGq~qriaiARal~~~~~ililDE~ts~lD~~~~~~i~~~l~ 497 (1224)
.. ..+ .+....++.+. .+++.. .+.....+|+||+||+++||++.++|+++ +|++..+.+.+.+.
T Consensus 77 ~~--~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~~~~ 145 (191)
T 1zp6_A 77 GR--YAK-EGYFVILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHSQFA 145 (191)
T ss_dssp HH--HHH-TSCEEEECSCCCTTTTHHHHTTCSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHHHTT
T ss_pred HH--Hhc-cCCeEEEeccCcHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHHHHh
Confidence 00 000 00000000000 011111 13345679999999999999999999876 58876666655554
Q ss_pred H
Q 047171 498 Q 498 (1224)
Q Consensus 498 ~ 498 (1224)
.
T Consensus 146 ~ 146 (191)
T 1zp6_A 146 D 146 (191)
T ss_dssp C
T ss_pred c
Confidence 3
No 228
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.33 E-value=5e-14 Score=161.78 Aligned_cols=177 Identities=16% Similarity=0.176 Sum_probs=117.1
Q ss_pred EEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCC----HHHHhc
Q 047171 979 ELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYN----LRKLRS 1054 (1224)
Q Consensus 979 ~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~----~~~lR~ 1054 (1224)
+.+|++++|. ...+|+++||++++|+.++|+|++|||||||++.|.|++.|++|+|.+.|.|+.... ....|+
T Consensus 31 e~~~~~~~~~---~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~ 107 (337)
T 2qm8_A 31 ESRRADHRAA---VRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKT 107 (337)
T ss_dssp TCSSHHHHHH---HHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGG
T ss_pred eeCCcccccC---hHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhh
Confidence 3444556663 235899999999999999999999999999999999999999999999999885433 134578
Q ss_pred ceEEEecCCCCCc----------cc---HHHHHc--------------cCCCCCCHHHHHHHHH-------------HHh
Q 047171 1055 CIALVSQEPTLFA----------GT---IRQNIV--------------YGKEVATEAEIRKAAV-------------LAN 1094 (1224)
Q Consensus 1055 ~i~~V~Qdp~LF~----------gT---IreNl~--------------~~~~~~~deei~~al~-------------~a~ 1094 (1224)
++++++|+|.+|. || ++|.+. .|... ++..+.+.+. ...
T Consensus 108 ~i~~v~q~~~~~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~-~~~~v~~~~d~vl~v~d~~~~~~~~~ 186 (337)
T 2qm8_A 108 RMARLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQ-SETAVADLTDFFLVLMLPGAGDELQG 186 (337)
T ss_dssp GSTTGGGCTTEEEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSS-CHHHHHTTSSEEEEEECSCC------
T ss_pred hheeeccCcccccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCc-chhhHHhhCCEEEEEEcCCCcccHHH
Confidence 8999999998884 22 233220 00000 1111110000 000
Q ss_pred HHHHHHhcccccc-cccCC-CCCCCChHHHHHHHHHHHHcc------CCCEEEEeccCCCCCHHHHHHHHHHHHHhc
Q 047171 1095 AHEFISSTEDGYD-TYCGE-RGVQLSGGQKQRIALARAVLK------NPMILLLDEATSALDSASENLVQEALEKMM 1163 (1224)
Q Consensus 1095 l~~~I~~lp~gld-t~vge-~G~~LSGGQrQRlaLARAll~------~p~ILlLDEaTSaLD~~te~~I~~~l~~~~ 1163 (1224)
+...+...|.-+- +.+.. ....+|+|++|+++.|++++. +|+++. ||++|.+.-..+.+.|.+..
T Consensus 187 i~~~i~~~~~ivvlNK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~~ 259 (337)
T 2qm8_A 187 IKKGIFELADMIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDHR 259 (337)
T ss_dssp CCTTHHHHCSEEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHHH
T ss_pred HHHHHhccccEEEEEchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHHH
Confidence 0000111121100 11110 123579999999999999998 688886 99999999999999887754
No 229
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=99.33 E-value=6.5e-15 Score=177.50 Aligned_cols=174 Identities=15% Similarity=0.128 Sum_probs=121.6
Q ss_pred ccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcceEEEecCCCCCc--ccH
Q 047171 993 QMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIALVSQEPTLFA--GTI 1070 (1224)
Q Consensus 993 ~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qdp~LF~--gTI 1070 (1224)
..+++++++.+++|+.++|+|||||||||++++|+|+++|++|.|.++|.+--.++. +..+++++|++. .. .|.
T Consensus 247 ~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~---~~~v~~~~r~~~-~~~~~~~ 322 (511)
T 2oap_1 247 SGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYH---ENWIAEVTRTGM-GEGEIDM 322 (511)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCC---SSEEEEECBCCS-SSCCBCH
T ss_pred HHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCC---CCeEEEEeeccc-ccCCcCH
Confidence 347899999999999999999999999999999999999999999999876322221 356788888776 33 377
Q ss_pred HHHHccC---CC------CCCHHHHHHHHHHHh-------------HHHHHHhc---ccccccccC-------CCCCCCC
Q 047171 1071 RQNIVYG---KE------VATEAEIRKAAVLAN-------------AHEFISST---EDGYDTYCG-------ERGVQLS 1118 (1224)
Q Consensus 1071 reNl~~~---~~------~~~deei~~al~~a~-------------l~~~I~~l---p~gldt~vg-------e~G~~LS 1118 (1224)
++++... +| +.++.|...+++.++ +.+.+..+ |.|....+. .....+|
T Consensus 323 ~~~l~~~LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~~~~~s 402 (511)
T 2oap_1 323 YDLLRAALRQRPDYIIVGEVRGREAQTLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLDIALVQTMWVR 402 (511)
T ss_dssp HHHHHTTGGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEEEEEES
T ss_pred HHHHHHhhccCCCeEEeCCcCHHHHHHHHHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHhhccEEEEEEEEEe
Confidence 7776432 12 345556666655443 22333332 222222111 1234579
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEE--EccCchhhhh-cC
Q 047171 1119 GGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMM-VGRTCVV--VAHRLSTIQK-AD 1182 (1224)
Q Consensus 1119 GGQrQRlaLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~--IaHrl~ti~~-aD 1182 (1224)
||||||.++|. + | |++||+++.+.+++.+.++. .++|+++ +||.++.+.. |+
T Consensus 403 ~G~~~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~ei~~~~g 458 (511)
T 2oap_1 403 GNTRLRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLEKMADFLG 458 (511)
T ss_dssp SSCEEEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHHHHHHHHT
T ss_pred CCCceEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHHHHHHHcC
Confidence 99999988751 1 7 99999988877777776654 3788875 8999998865 64
No 230
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.32 E-value=4.4e-16 Score=164.28 Aligned_cols=165 Identities=16% Similarity=0.074 Sum_probs=107.5
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcceEEEecCCCCC-cccHHHHHccCCCCCCHH
Q 047171 1006 GKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIALVSQEPTLF-AGTIRQNIVYGKEVATEA 1084 (1224)
Q Consensus 1006 Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qdp~LF-~gTIreNl~~~~~~~~de 1084 (1224)
|+.++|+|||||||||+++.|.+ |.+|.+.+||.++... ...++++|++..+ ..|+++|+....
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~~~------ 66 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDIINHM------VVGGYRPPWESDELLALTWKNITDLT------ 66 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEHHHHHTT------CCTTCCCGGGCHHHHHHHHHHHHHHH------
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---ccCCeEEEcccchhhh------hccccccCccchhHHHHHHHHHHHHH------
Confidence 68899999999999999999987 5689999999765432 2467788776332 346777764310
Q ss_pred HHHHHHHHHhHHHHHHhcccccccccCC----CCCCC--ChHHHHHHHHHH------HHccCCCEEEEeccCCCCCHHHH
Q 047171 1085 EIRKAAVLANAHEFISSTEDGYDTYCGE----RGVQL--SGGQKQRIALAR------AVLKNPMILLLDEATSALDSASE 1152 (1224)
Q Consensus 1085 ei~~al~~a~l~~~I~~lp~gldt~vge----~G~~L--SGGQrQRlaLAR------All~~p~ILlLDEaTSaLD~~te 1152 (1224)
..... .+ .+.=++...+. .-..+ |+|++|++.++. +++++|+...+|+ ++|+...
T Consensus 67 --~~~~~-~~-------~~~ild~~~~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~ 133 (189)
T 2bdt_A 67 --VNFLL-AQ-------NDVVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCL 133 (189)
T ss_dssp --HHHHH-TT-------CEEEEESCCCHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGG
T ss_pred --HHHHh-cC-------CcEEEeeccCHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHH
Confidence 00000 00 00001111000 00124 888888888888 8888888888884 7999877
Q ss_pred HHHHHHHHHhc-CCCeEEEEccC-chhhhh-cCEEEEEeCCEEEEecChhHH
Q 047171 1153 NLVQEALEKMM-VGRTCVVVAHR-LSTIQK-ADNIVVIKNGKVVEQGTQSSL 1201 (1224)
Q Consensus 1153 ~~I~~~l~~~~-~~~TvI~IaHr-l~ti~~-aD~I~vl~~G~Ive~Gt~~eL 1201 (1224)
+. ++.+++.. .+.|+|..+|. ++++.. ||+|+ ++|+++..|+++-|
T Consensus 134 ~~-~~~~~~~~~~~~~ii~tsh~~~~~~e~~~~~i~--~~g~~~~~~~~~~~ 182 (189)
T 2bdt_A 134 EL-VEEFESKGIDERYFYNTSHLQPTNLNDIVKNLK--TNPRFIFCMAGDPL 182 (189)
T ss_dssp HH-HHHHHHTTCCTTSEEECSSSCGGGHHHHHHHHH--HCGGGSCC------
T ss_pred HH-HHHHhhcCCCccEEEeCCCCChhhHHHHHHHHh--hCCcEEEeecCCch
Confidence 77 77777664 35789999999 999876 99998 99999999998766
No 231
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.28 E-value=1.9e-13 Score=138.82 Aligned_cols=86 Identities=15% Similarity=0.124 Sum_probs=71.3
Q ss_pred EEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcceEEEec
Q 047171 982 NVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIALVSQ 1061 (1224)
Q Consensus 982 ~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~~V~Q 1061 (1224)
|++++|. +..+++++||+|++|++++|+||||||||||+++|.|++ |++|+|.++|.++.+. ...+ + +++|
T Consensus 12 ~~~~~~g---~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i~~~--~~~~-~--~~~q 82 (158)
T 1htw_A 12 FSMLRFG---KKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTLVEE--YNIA-G--KMIY 82 (158)
T ss_dssp HHHHHHH---HHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTCEEE--EEET-T--EEEE
T ss_pred HHHHHHH---HHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEeeeee--ccCC-C--ccee
Confidence 4455663 245899999999999999999999999999999999999 9999999999988531 1112 2 7999
Q ss_pred CCCCCcccHHHHHcc
Q 047171 1062 EPTLFAGTIRQNIVY 1076 (1224)
Q Consensus 1062 dp~LF~gTIreNl~~ 1076 (1224)
++.+|.-|+.||+.+
T Consensus 83 ~~~l~~ltv~e~l~~ 97 (158)
T 1htw_A 83 HFDLYRLADPEELEF 97 (158)
T ss_dssp EEECTTCSCTTHHHH
T ss_pred ccccccCCcHHHHHH
Confidence 998888899999853
No 232
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.25 E-value=9.2e-12 Score=145.41 Aligned_cols=75 Identities=33% Similarity=0.391 Sum_probs=67.9
Q ss_pred CCCCChHHHHHH------HHHHHhccC-CCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCCcchhhccCEEEE
Q 047171 451 GVQLSGGQKQRI------AIARALIRD-PKILLLDEATSALDAESERIVQEALDQASQGRTMIIIAHRLSTIRKADLIGV 523 (1224)
Q Consensus 451 g~~LSgGq~qri------aiARal~~~-~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~i~H~l~~~~~ad~i~v 523 (1224)
...||||||||+ ++|||+..+ |++|||||||++||+.+...+.+.|.++.+++++|+|||+.+....||++++
T Consensus 278 ~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~th~~~~~~~~d~~~~ 357 (371)
T 3auy_A 278 IDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIITHHRELEDVADVIIN 357 (371)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCSCSEEEEEESCGGGGGGCSEEEE
T ss_pred hHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhccCCeEEEEEChHHHHhhCCEEEE
Confidence 368999999988 668999999 9999999999999999999999999887666899999999986566999999
Q ss_pred Ee
Q 047171 524 LQ 525 (1224)
Q Consensus 524 l~ 525 (1224)
|+
T Consensus 358 l~ 359 (371)
T 3auy_A 358 VK 359 (371)
T ss_dssp EE
T ss_pred EE
Confidence 97
No 233
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.25 E-value=3.7e-12 Score=148.19 Aligned_cols=138 Identities=18% Similarity=0.210 Sum_probs=80.4
Q ss_pred EEEEEcCCCCChHHHHHHHhc-ccCCCCceEEECCccCCCCCHHHHhcceEEEecCCCCC-cccHHHHHccCCCCCCHHH
Q 047171 1008 TVALVGQSGSGKSTIIGLIER-FYDPQSGSVMVDERNIKSYNLRKLRSCIALVSQEPTLF-AGTIRQNIVYGKEVATEAE 1085 (1224)
Q Consensus 1008 ~vaIVG~SGsGKSTL~~lL~r-l~~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qdp~LF-~gTIreNl~~~~~~~~dee 1085 (1224)
.+.|+||+|+||||+++++.| ++.|..|.|.++|.+..... .-+..+++++|++++. +.+ ..+ ..+.+.
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-----~~~--~~~~~~ 108 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTAS--NRKLELNVVSSPYHLEITPS-----DMG--NNDRIV 108 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHHHHSCTTCCC--------------------CCEECSSEEEECCC-----------CCHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccc--cccceeeeecccceEEecHh-----hcC--CcchHH
Confidence 399999999999999999999 89999999999998775432 2377899999998752 111 001 111112
Q ss_pred HHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCC
Q 047171 1086 IRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMVG 1165 (1224)
Q Consensus 1086 i~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~ 1165 (1224)
+.+.++. +.... +++..+ .||| +..+|+++|||||++ ||.++...+.+.+++..++
T Consensus 109 ~~~~i~~-----~~~~~--~~~~~~-----~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~~~ 164 (354)
T 1sxj_E 109 IQELLKE-----VAQME--QVDFQD-----SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKYSKN 164 (354)
T ss_dssp HHHHHHH-----HTTTT--C----------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTT
T ss_pred HHHHHHH-----HHHhc--cccccc-----cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhcCC
Confidence 3332221 11111 122111 4676 778999999999999 9999999999999987778
Q ss_pred CeEEEEccCchhh
Q 047171 1166 RTCVVVAHRLSTI 1178 (1224)
Q Consensus 1166 ~TvI~IaHrl~ti 1178 (1224)
+++|++||+++.+
T Consensus 165 ~~~Il~t~~~~~l 177 (354)
T 1sxj_E 165 IRLIMVCDSMSPI 177 (354)
T ss_dssp EEEEEEESCSCSS
T ss_pred CEEEEEeCCHHHH
Confidence 8999999997653
No 234
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.24 E-value=1e-11 Score=144.96 Aligned_cols=74 Identities=28% Similarity=0.390 Sum_probs=67.2
Q ss_pred CCCChHHHHHH------HHHHHHccC-CCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEE
Q 047171 1115 VQLSGGQKQRI------ALARAVLKN-PMILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLSTIQKADNIVVI 1187 (1224)
Q Consensus 1115 ~~LSGGQrQRl------aLARAll~~-p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~aD~I~vl 1187 (1224)
..|||||+||+ |+|||+..+ |++|||||||++||+.+...+.+.|.+..++++||+|||+++....||++++|
T Consensus 279 ~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~th~~~~~~~~d~~~~l 358 (371)
T 3auy_A 279 DNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIITHHRELEDVADVIINV 358 (371)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCSCSEEEEEESCGGGGGGCSEEEEE
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhccCCeEEEEEChHHHHhhCCEEEEE
Confidence 36999999987 678999999 99999999999999999999999998876667999999999865669999999
Q ss_pred e
Q 047171 1188 K 1188 (1224)
Q Consensus 1188 ~ 1188 (1224)
+
T Consensus 359 ~ 359 (371)
T 3auy_A 359 K 359 (371)
T ss_dssp E
T ss_pred E
Confidence 7
No 235
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.23 E-value=7.6e-12 Score=137.09 Aligned_cols=146 Identities=14% Similarity=0.191 Sum_probs=87.1
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHhc--CCCC-----CCcEEEECCEecCC-CCHHHHhcccEEecCCCCCCcccHHHHHh
Q 047171 341 PDTPTIGLVGSSGSGKSTVISLLER--FYDP-----VKGNILLDGHKIKK-LQLKWLRSQMGLVNQEPILFSTSIKENIL 412 (1224)
Q Consensus 341 ~~~~~~~ivG~sGsGKSTl~~ll~~--~~~~-----~~G~i~~~g~~~~~-~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~ 412 (1224)
+++..++|+||||||||||++.|++ ..+| ..|.+++++.+... -....+++++++.+|+ +.+|+.
T Consensus 22 ~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~-------~~~~~~ 94 (243)
T 1n0w_A 22 ETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSD-------VLDNVA 94 (243)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHH-------HHHTEE
T ss_pred cCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHH-------HhhCeE
Confidence 3567999999999999999999999 5555 67889998865211 1122344556666553 456665
Q ss_pred cCCCCCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHH-----
Q 047171 413 IGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAE----- 487 (1224)
Q Consensus 413 ~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~ililDE~ts~lD~~----- 487 (1224)
+..+ .+.++..+..+ .+.+.+. -.+|+++++|||++.+|++
T Consensus 95 ~~~~-~~~~~~~~~~~--~~~~~~~-------------------------------~~~~~lliiD~~~~~~~~~~~~~~ 140 (243)
T 1n0w_A 95 YARA-FNTDHQTQLLY--QASAMMV-------------------------------ESRYALLIVDSATALYRTDYSGRG 140 (243)
T ss_dssp EEEC-CSHHHHHHHHH--HHHHHHH-------------------------------HSCEEEEEEETSSGGGC-------
T ss_pred EEec-CCHHHHHHHHH--HHHHHHh-------------------------------cCCceEEEEeCchHHHHHHhcCCc
Confidence 5432 22222221111 0111110 1689999999999999986
Q ss_pred --HHH-----HHHHHHHHHc--CCCeEEEEeCCcch-------------------hh-ccCEEEEEeCc
Q 047171 488 --SER-----IVQEALDQAS--QGRTMIIIAHRLST-------------------IR-KADLIGVLQSG 527 (1224)
Q Consensus 488 --~~~-----~i~~~l~~~~--~~~t~i~i~H~l~~-------------------~~-~ad~i~vl~~G 527 (1224)
+++ .+...+.++. .|.|+|+++|.... +. .||.+++|+.|
T Consensus 141 ~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~ 209 (243)
T 1n0w_A 141 ELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKG 209 (243)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC-------------------------CCTTCEEEEEEEC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEEEc
Confidence 322 2333333322 38999999996543 22 48999999865
No 236
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.23 E-value=1.8e-15 Score=159.54 Aligned_cols=160 Identities=16% Similarity=0.140 Sum_probs=104.9
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcccEEecCCCCCC-cccHHHHHhcCCCCCCHHH
Q 047171 344 PTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILF-STSIKENILIGKPGASMET 422 (1224)
Q Consensus 344 ~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf-~~ti~~ni~~g~~~~~~~~ 422 (1224)
..++|+|||||||||+++.|++ |.+|.+.++|.++... ..+++++|....+ ..++++|+.+.
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~~-------- 65 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDIINHM------VVGGYRPPWESDELLALTWKNITDL-------- 65 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEHHHHHTT------CCTTCCCGGGCHHHHHHHHHHHHHH--------
T ss_pred eEEEEECCCCCcHHHHHHHHhc---ccCCeEEEcccchhhh------hccccccCccchhHHHHHHHHHHHH--------
Confidence 3689999999999999999997 6789999998665331 2467787765333 34777776431
Q ss_pred HHHHHHHhcHHHHHHhccccccccccC--------CCCCC--ChHHHHHHHHHH------HhccCCCEEEEeCCCCCCCH
Q 047171 423 VVKAAQAANVHDFIMKLNDGYETKVGQ--------FGVQL--SGGQKQRIAIAR------ALIRDPKILLLDEATSALDA 486 (1224)
Q Consensus 423 ~~~~~~~~~~~~~i~~l~~g~~t~~~~--------~g~~L--SgGq~qriaiAR------al~~~~~ililDE~ts~lD~ 486 (1224)
++ .+.. .|.+..+.. .-..+ |+|++|++.++. +++.+|+...+|+ ++|+
T Consensus 66 ----~~-----~~~~---~~~~~ild~~~~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~ 130 (189)
T 2bdt_A 66 ----TV-----NFLL---AQNDVVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGE 130 (189)
T ss_dssp ----HH-----HHHH---TTCEEEEESCCCHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CG
T ss_pred ----HH-----HHHh---cCCcEEEeeccCHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCH
Confidence 00 0000 011111100 01124 888888888888 8888888888884 7898
Q ss_pred HHHHHHHHHHHHHc-CCCeEEEEeCC-cchhhc-cCEEEEEeCceEEeecChHHH
Q 047171 487 ESERIVQEALDQAS-QGRTMIIIAHR-LSTIRK-ADLIGVLQSGRVIESGSHDVL 538 (1224)
Q Consensus 487 ~~~~~i~~~l~~~~-~~~t~i~i~H~-l~~~~~-ad~i~vl~~G~i~~~g~~~~l 538 (1224)
...+. .+.+.... .+.|+|..+|. ++++.. ||+|+ ++|+++..|+.+-|
T Consensus 131 ~~~~~-~~~~~~~~~~~~~ii~tsh~~~~~~e~~~~~i~--~~g~~~~~~~~~~~ 182 (189)
T 2bdt_A 131 RCLEL-VEEFESKGIDERYFYNTSHLQPTNLNDIVKNLK--TNPRFIFCMAGDPL 182 (189)
T ss_dssp GGGHH-HHHHHHTTCCTTSEEECSSSCGGGHHHHHHHHH--HCGGGSCC------
T ss_pred HHHHH-HHHHhhcCCCccEEEeCCCCChhhHHHHHHHHh--hCCcEEEeecCCch
Confidence 77666 66666653 46899999999 999876 99998 99999999987655
No 237
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=99.23 E-value=2.5e-14 Score=167.91 Aligned_cols=142 Identities=16% Similarity=0.168 Sum_probs=97.0
Q ss_pred EEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCC----CHHHHh
Q 047171 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSY----NLRKLR 1053 (1224)
Q Consensus 978 I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~----~~~~lR 1053 (1224)
++++|+++.|+ ...+|+++ + .++|+.++|+|||||||||++++|+|+++|++|+|.++|.++... +...++
T Consensus 144 ~~l~~Lg~~~~---~~~~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~ 218 (418)
T 1p9r_A 144 LDLHSLGMTAH---NHDNFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVN 218 (418)
T ss_dssp CCGGGSCCCHH---HHHHHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECB
T ss_pred CCHHHcCCCHH---HHHHHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEc
Confidence 44555665553 23478888 5 389999999999999999999999999999999999999887421 112344
Q ss_pred cceEEEe---------cCCCCC--c-----ccHHHHHccCCC--------CC-CHHHHHHHHHHHhHHHHHHhccccccc
Q 047171 1054 SCIALVS---------QEPTLF--A-----GTIRQNIVYGKE--------VA-TEAEIRKAAVLANAHEFISSTEDGYDT 1108 (1224)
Q Consensus 1054 ~~i~~V~---------Qdp~LF--~-----gTIreNl~~~~~--------~~-~deei~~al~~a~l~~~I~~lp~gldt 1108 (1224)
+++++.+ |+|.++ . .|+++|+.++.. .. +..+..+.+...++.++.
T Consensus 219 ~~~g~~f~~~lr~~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~~i~rL~~lgl~~~~--------- 289 (418)
T 1p9r_A 219 PRVDMTFARGLRAILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVGAVTRLRDMGIEPFL--------- 289 (418)
T ss_dssp GGGTBCHHHHHHHHGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHHHHHHHHHHTCCHHH---------
T ss_pred cccCcCHHHHHHHHhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHHHHHHHHHcCCcHHH---------
Confidence 5566644 998753 2 488888865311 01 112233333333332221
Q ss_pred ccCCCCCCCChHHHHHHHHHHHHccCCCEEE
Q 047171 1109 YCGERGVQLSGGQKQRIALARAVLKNPMILL 1139 (1224)
Q Consensus 1109 ~vge~G~~LSGGQrQRlaLARAll~~p~ILl 1139 (1224)
...+|||||+|| |||+++.+|++..
T Consensus 290 ----~~~~LSgg~~QR--LaraL~~~p~~~~ 314 (418)
T 1p9r_A 290 ----ISSSLLGVLAQR--LVRTLCPDCKEPY 314 (418)
T ss_dssp ----HHHHEEEEEEEE--EEEEECTTTCEEE
T ss_pred ----HHHHHHHHHHHH--hhhhhcCCCCccC
Confidence 234699999999 9999999999975
No 238
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.22 E-value=4.9e-13 Score=147.14 Aligned_cols=147 Identities=14% Similarity=0.171 Sum_probs=97.3
Q ss_pred CCcEEEEEcCCCCChHHHHHHHh---cccCCCCceEEECCccCCCCCHHHHhcceEEEecCCCCCc-ccHHHHHccC---
Q 047171 1005 AGKTVALVGQSGSGKSTIIGLIE---RFYDPQSGSVMVDERNIKSYNLRKLRSCIALVSQEPTLFA-GTIRQNIVYG--- 1077 (1224)
Q Consensus 1005 ~Ge~vaIVG~SGsGKSTL~~lL~---rl~~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qdp~LF~-gTIreNl~~~--- 1077 (1224)
++++++|+|++||||||++++|. |+..|+.|+|.++|.+.. ..+...+..++|++.++. .|+.+|+...
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~----~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~ 101 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKAS----TEVGEMAKQYIEKSLLVPDHVITRLMMSELEN 101 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTT----CHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcC----ChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 47899999999999999999999 999999999999887542 234556777788877654 5888888531
Q ss_pred ---C----CC--CCHHHHHHHHHHHhHHHHHH--hcc-c-ccccccCCCCCCCChHHHHHHHHHHHH-ccCCCEEEEe--
Q 047171 1078 ---K----EV--ATEAEIRKAAVLANAHEFIS--STE-D-GYDTYCGERGVQLSGGQKQRIALARAV-LKNPMILLLD-- 1141 (1224)
Q Consensus 1078 ---~----~~--~~deei~~al~~a~l~~~I~--~lp-~-gldt~vge~G~~LSGGQrQRlaLARAl-l~~p~ILlLD-- 1141 (1224)
. .. .+.++.....+..... .+. ..| + .++-........||| |+ ||+ +.+|++++||
T Consensus 102 ~~~~~~il~g~~~~~~~~~~l~~~~~~~-~vi~L~~~~~~~l~r~~~r~~~~lSg----rv---~al~~~~P~~lllD~~ 173 (246)
T 2bbw_A 102 RRGQHWLLDGFPRTLGQAEALDKICEVD-LVISLNIPFETLKDRLSRRWIHPPSG----RV---YNLDFNPPHVHGIDDV 173 (246)
T ss_dssp CTTSCEEEESCCCSHHHHHHHHTTCCCC-EEEEEECCHHHHHHHHHTEEEETTTT----EE---EETTTSCCSSTTBCTT
T ss_pred cCCCeEEEECCCCCHHHHHHHHhhcCCC-EEEEEECCHHHHHHHHHcCCCcCCCC----Cc---cccccCCCcccccccc
Confidence 0 01 1222211111000000 000 000 0 011111233456898 65 888 9999999999
Q ss_pred --ccCCCCCHHHHHHHHHHHHHhc
Q 047171 1142 --EATSALDSASENLVQEALEKMM 1163 (1224)
Q Consensus 1142 --EaTSaLD~~te~~I~~~l~~~~ 1163 (1224)
|||+++|..+++.+.+.++++.
T Consensus 174 ~~EP~~~ld~~~~~~i~~~l~~~~ 197 (246)
T 2bbw_A 174 TGEPLVQQEDDKPEAVAARLRQYK 197 (246)
T ss_dssp TCCBCBCCGGGSHHHHHHHHHHHH
T ss_pred cccccccCCCCcHHHHHHHHHHHH
Confidence 9999999999999999998764
No 239
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.22 E-value=8.5e-12 Score=141.91 Aligned_cols=166 Identities=15% Similarity=0.126 Sum_probs=108.5
Q ss_pred EEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHH----HHhcc--eEEEecCCCCCc-ccHHHHH
Q 047171 1002 KIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLR----KLRSC--IALVSQEPTLFA-GTIRQNI 1074 (1224)
Q Consensus 1002 ~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~----~lR~~--i~~V~Qdp~LF~-gTIreNl 1074 (1224)
..++|+.++|||||||||||+++.|.|++.|++|+|.++|.|+...... .++++ +.+++|++.++. .|+++|+
T Consensus 125 ~~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l 204 (328)
T 3e70_C 125 KAEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAI 204 (328)
T ss_dssp SSCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHH
Confidence 3478999999999999999999999999999999999999999776643 34444 559999988775 5899998
Q ss_pred ccCCCCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHH
Q 047171 1075 VYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENL 1154 (1224)
Q Consensus 1075 ~~~~~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll~~p~ILlLDEaTSaLD~~te~~ 1154 (1224)
.++.. .+ .+.+ -+||. |.... -..=-++.-.++|++..++++++||.+|. .|... .
T Consensus 205 ~~~~~-------------~~-~d~v-----liDta-G~~~~-~~~l~~eL~~i~ral~~de~llvLDa~t~-~~~~~--~ 260 (328)
T 3e70_C 205 QHAKA-------------RG-IDVV-----LIDTA-GRSET-NRNLMDEMKKIARVTKPNLVIFVGDALAG-NAIVE--Q 260 (328)
T ss_dssp HHHHH-------------HT-CSEE-----EEEEC-CSCCT-TTCHHHHHHHHHHHHCCSEEEEEEEGGGT-THHHH--H
T ss_pred HHHHh-------------cc-chhh-----HHhhc-cchhH-HHHHHHHHHHHHHHhcCCCCEEEEecHHH-HHHHH--H
Confidence 65410 00 0000 02321 11110 01112344459999999999999996665 33221 1
Q ss_pred HHHHHHHhcCCCeEEEEccCchh---------hh-hcCEEEEEeCCEEE
Q 047171 1155 VQEALEKMMVGRTCVVVAHRLST---------IQ-KADNIVVIKNGKVV 1193 (1224)
Q Consensus 1155 I~~~l~~~~~~~TvI~IaHrl~t---------i~-~aD~I~vl~~G~Iv 1193 (1224)
+ +.+.+ ..+.|.|++||--.+ +. ..-.|..+..|+-+
T Consensus 261 ~-~~~~~-~~~it~iilTKlD~~a~~G~~l~~~~~~~~pi~~i~~Ge~v 307 (328)
T 3e70_C 261 A-RQFNE-AVKIDGIILTKLDADARGGAALSISYVIDAPILFVGVGQGY 307 (328)
T ss_dssp H-HHHHH-HSCCCEEEEECGGGCSCCHHHHHHHHHHTCCEEEEECSSST
T ss_pred H-HHHHH-hcCCCEEEEeCcCCccchhHHHHHHHHHCCCEEEEeCCCCc
Confidence 1 22222 137899999993322 11 13567778888754
No 240
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.21 E-value=1.6e-11 Score=123.51 Aligned_cols=91 Identities=14% Similarity=0.248 Sum_probs=71.5
Q ss_pred ceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCc--eEEECCccCCCCCHHHHhcceEEEecCCCCCcccHHH
Q 047171 995 IFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSG--SVMVDERNIKSYNLRKLRSCIALVSQEPTLFAGTIRQ 1072 (1224)
Q Consensus 995 vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G--~I~idG~di~~~~~~~lR~~i~~V~Qdp~LF~gTIre 1072 (1224)
+|+++ +|+.++|+||+|||||||++++.+.+.+ +| .+++++.++...
T Consensus 30 ~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~-~g~~~~~~~~~~~~~~------------------------- 78 (149)
T 2kjq_A 30 VLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE-AGKNAAYIDAASMPLT------------------------- 78 (149)
T ss_dssp HCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT-TTCCEEEEETTTSCCC-------------------------
T ss_pred HHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh-cCCcEEEEcHHHhhHH-------------------------
Confidence 56666 8999999999999999999999999987 57 666666543221
Q ss_pred HHccCCCCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeccCCCCCHHHH
Q 047171 1073 NIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASE 1152 (1224)
Q Consensus 1073 Nl~~~~~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll~~p~ILlLDEaTSaLD~~te 1152 (1224)
+++.+|++|+||||++ +|...+
T Consensus 79 ---------------------------------------------------------~~~~~~~lLilDE~~~-~~~~~~ 100 (149)
T 2kjq_A 79 ---------------------------------------------------------DAAFEAEYLAVDQVEK-LGNEEQ 100 (149)
T ss_dssp ---------------------------------------------------------GGGGGCSEEEEESTTC-CCSHHH
T ss_pred ---------------------------------------------------------HHHhCCCEEEEeCccc-cChHHH
Confidence 2367899999999998 666558
Q ss_pred HHHHHHHHHhc-CCCe-EEEEccC
Q 047171 1153 NLVQEALEKMM-VGRT-CVVVAHR 1174 (1224)
Q Consensus 1153 ~~I~~~l~~~~-~~~T-vI~IaHr 1174 (1224)
+.+.+.+++.. +++| +|++||+
T Consensus 101 ~~l~~li~~~~~~g~~~iiits~~ 124 (149)
T 2kjq_A 101 ALLFSIFNRFRNSGKGFLLLGSEY 124 (149)
T ss_dssp HHHHHHHHHHHHHTCCEEEEEESS
T ss_pred HHHHHHHHHHHHcCCcEEEEECCC
Confidence 88888887765 4677 7777775
No 241
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.21 E-value=7.5e-12 Score=145.53 Aligned_cols=138 Identities=17% Similarity=0.253 Sum_probs=79.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhc-CCCCCCcEEEECCEecCCCCHHHHhcccEEecCCCCCC-cccHHHHHhcCCCCCCHHH
Q 047171 345 TIGLVGSSGSGKSTVISLLER-FYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILF-STSIKENILIGKPGASMET 422 (1224)
Q Consensus 345 ~~~ivG~sGsGKSTl~~ll~~-~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf-~~ti~~ni~~g~~~~~~~~ 422 (1224)
.+.|+||+|+||||+++.++| ++.|+.|.+.++|.++.... ..+..+++++|++++. +.+- .+. ...+.
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-----~~~--~~~~~ 108 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTAS--NRKLELNVVSSPYHLEITPSD-----MGN--NDRIV 108 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHHHHSCTTCCC--------------------CCEECSSEEEECCC-----------CCHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccc--cccceeeeecccceEEecHhh-----cCC--cchHH
Confidence 389999999999999999999 89999999999998765422 2266799999988653 1110 011 11111
Q ss_pred HHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCC
Q 047171 423 VVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQASQG 502 (1224)
Q Consensus 423 ~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~ 502 (1224)
+.+..+ ++.... +++..+ +||| +..+|+++|+|||++ ||+++...+.+.+++..++
T Consensus 109 ~~~~i~-----~~~~~~--~~~~~~-----~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~~~ 164 (354)
T 1sxj_E 109 IQELLK-----EVAQME--QVDFQD-----SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKYSKN 164 (354)
T ss_dssp HHHHHH-----HHTTTT--C----------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTT
T ss_pred HHHHHH-----HHHHhc--cccccc-----cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhcCC
Confidence 222211 111111 122111 5676 778999999999999 9999999999999887778
Q ss_pred CeEEEEeCCcchh
Q 047171 503 RTMIIIAHRLSTI 515 (1224)
Q Consensus 503 ~t~i~i~H~l~~~ 515 (1224)
.++|++||+.+.+
T Consensus 165 ~~~Il~t~~~~~l 177 (354)
T 1sxj_E 165 IRLIMVCDSMSPI 177 (354)
T ss_dssp EEEEEEESCSCSS
T ss_pred CEEEEEeCCHHHH
Confidence 8999999998754
No 242
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=99.20 E-value=1.2e-11 Score=144.43 Aligned_cols=147 Identities=16% Similarity=0.259 Sum_probs=95.9
Q ss_pred EEeCCcEEEEEcCCCCChHHHHHH--HhcccCCCCc-----eEEECCccC-CCCCHHHHhcceEEEecCCCCCcccHHHH
Q 047171 1002 KIEAGKTVALVGQSGSGKSTIIGL--IERFYDPQSG-----SVMVDERNI-KSYNLRKLRSCIALVSQEPTLFAGTIRQN 1073 (1224)
Q Consensus 1002 ~I~~Ge~vaIVG~SGsGKSTL~~l--L~rl~~p~~G-----~I~idG~di-~~~~~~~lR~~i~~V~Qdp~LF~gTIreN 1073 (1224)
-|++|+.++|+||+|||||||+.. +.+..+++.| .+++|+.+. +......+++++++.+| ++.+|
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~-------~vlen 246 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPD-------DALNN 246 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHH-------HHHHT
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChH-------hHhhc
Confidence 689999999999999999999994 4566665444 899999763 22223345566777665 57778
Q ss_pred HccCCCCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHc--cCCCEEEEeccCCCCCHHH
Q 047171 1074 IVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVL--KNPMILLLDEATSALDSAS 1151 (1224)
Q Consensus 1074 l~~~~~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll--~~p~ILlLDEaTSaLD~~t 1151 (1224)
+.+..+. +-++..+ .+.-+++++ .+|+++++||||+.+|.+.
T Consensus 247 i~~~~~~-~~~~~~~-----------------------------------~l~~~~~~l~~~~~~llVIDs~t~~~~~~~ 290 (400)
T 3lda_A 247 VAYARAY-NADHQLR-----------------------------------LLDAAAQMMSESRFSLIVVDSVMALYRTDF 290 (400)
T ss_dssp EEEEECC-SHHHHHH-----------------------------------HHHHHHHHHHHSCEEEEEEETGGGGCC---
T ss_pred EEEeccC-ChHHHHH-----------------------------------HHHHHHHHHHhcCCceEEecchhhhCchhh
Confidence 7765432 2222221 111122222 4799999999999999764
Q ss_pred H------------HHHHHHHHHhc--CCCeEEEEccCch-------------------hhhh-cCEEEEEeCCE
Q 047171 1152 E------------NLVQEALEKMM--VGRTCVVVAHRLS-------------------TIQK-ADNIVVIKNGK 1191 (1224)
Q Consensus 1152 e------------~~I~~~l~~~~--~~~TvI~IaHrl~-------------------ti~~-aD~I~vl~~G~ 1191 (1224)
. ..+.+.|.++. .++|||+|+|-.. .+.+ +|.++.|+.|+
T Consensus 291 sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~~~~ 364 (400)
T 3lda_A 291 SGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGFKKGK 364 (400)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHHHHCSEEEEEEECS
T ss_pred cCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHHHhcceEEEEEecC
Confidence 3 44555665554 3899999999832 2344 89999998763
No 243
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.20 E-value=7.6e-12 Score=142.89 Aligned_cols=121 Identities=17% Similarity=0.117 Sum_probs=81.2
Q ss_pred ceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccC-CCCceEEEC-CccCCCCCHHHHhcceEEEecCCCCCc-ccHH
Q 047171 995 IFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYD-PQSGSVMVD-ERNIKSYNLRKLRSCIALVSQEPTLFA-GTIR 1071 (1224)
Q Consensus 995 vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~-p~~G~I~id-G~di~~~~~~~lR~~i~~V~Qdp~LF~-gTIr 1071 (1224)
-++++++. .+|++++|+||||||||||+++|.|+.. |..|+|.++ |.+.. ...++.++++||++.+++ -|++
T Consensus 205 gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~----tt~~~~i~~v~q~~~l~dtpgv~ 279 (358)
T 2rcn_A 205 GLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQH----TTTAARLYHFPHGGDVIDSPGVR 279 (358)
T ss_dssp THHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-----------------CCCEEEECTTSCEEEECHHHH
T ss_pred CHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCcc----ceEEEEEEEECCCCEecCcccHH
Confidence 46777764 4799999999999999999999999999 999999997 76542 235678999999998876 4898
Q ss_pred HHHccCCCCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHH
Q 047171 1072 QNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAV 1131 (1224)
Q Consensus 1072 eNl~~~~~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAl 1131 (1224)
++-. ...+.+++.+. ..++...+ |+....+....+|| ||+||++||+++
T Consensus 280 e~~l---~~l~~~e~~~~-----~~e~l~~~--gl~~f~~~~~~~lS-G~~~r~ala~gl 328 (358)
T 2rcn_A 280 EFGL---WHLEPEQITQG-----FVEFHDYL--GHCKYRDCKHDADP-GCAIREAVENGA 328 (358)
T ss_dssp TCCC---CCCCHHHHHHT-----SGGGGGGT--TCSSSTTCCSSSCT-TCHHHHHHHHTS
T ss_pred Hhhh---cCCCHHHHHHH-----HHHHHHHc--CCchhcCCCcccCC-HHHHHHHHHhcC
Confidence 8632 23344544322 22332222 44444455667899 999999999975
No 244
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.20 E-value=9.7e-12 Score=142.04 Aligned_cols=112 Identities=15% Similarity=0.071 Sum_probs=76.7
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCCC-CCCcEEEEC-CEecCCCCHHHHhcccEEecCCCCCCcc-cHHHHHhcCCCCC
Q 047171 342 DTPTIGLVGSSGSGKSTVISLLERFYD-PVKGNILLD-GHKIKKLQLKWLRSQMGLVNQEPILFST-SIKENILIGKPGA 418 (1224)
Q Consensus 342 ~~~~~~ivG~sGsGKSTl~~ll~~~~~-~~~G~i~~~-g~~~~~~~~~~~r~~i~~v~Q~~~lf~~-ti~~ni~~g~~~~ 418 (1224)
.+++++|+||||||||||+++|+|... |+.|+|.++ |.+.. ...+..+++++|++++++. +++++-. ...
T Consensus 214 ~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~----tt~~~~i~~v~q~~~l~dtpgv~e~~l---~~l 286 (358)
T 2rcn_A 214 TGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQH----TTTAARLYHFPHGGDVIDSPGVREFGL---WHL 286 (358)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-----------------CCCEEEECTTSCEEEECHHHHTCCC---CCC
T ss_pred CCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCcc----ceEEEEEEEECCCCEecCcccHHHhhh---cCC
Confidence 356999999999999999999999999 999999987 76542 1235679999999988865 8998632 233
Q ss_pred CHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHh
Q 047171 419 SMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARAL 468 (1224)
Q Consensus 419 ~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal 468 (1224)
+.+++.+ .+.++++.+ |+....+....+|| ||+||++||+++
T Consensus 287 ~~~e~~~-----~~~e~l~~~--gl~~f~~~~~~~lS-G~~~r~ala~gl 328 (358)
T 2rcn_A 287 EPEQITQ-----GFVEFHDYL--GHCKYRDCKHDADP-GCAIREAVENGA 328 (358)
T ss_dssp CHHHHHH-----TSGGGGGGT--TCSSSTTCCSSSCT-TCHHHHHHHHTS
T ss_pred CHHHHHH-----HHHHHHHHc--CCchhcCCCcccCC-HHHHHHHHHhcC
Confidence 4444322 223444444 55555677788999 999999999986
No 245
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.19 E-value=4.2e-13 Score=147.72 Aligned_cols=136 Identities=18% Similarity=0.210 Sum_probs=95.9
Q ss_pred CCEEEEEcCCCCcHHHHHHHHh---cCCCCCCcEEEECCEecCCCCHHHHhcccEEecCCCCCCc-ccHHHHHhcC----
Q 047171 343 TPTIGLVGSSGSGKSTVISLLE---RFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFS-TSIKENILIG---- 414 (1224)
Q Consensus 343 ~~~~~ivG~sGsGKSTl~~ll~---~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~-~ti~~ni~~g---- 414 (1224)
...++|+|||||||||++++|+ |+..|+.|+|.++|.+.. ..+...++.++|++.+++ .++.+|+...
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~----~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~~ 102 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKAS----TEVGEMAKQYIEKSLLVPDHVITRLMMSELENR 102 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTT----CHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcC----ChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Confidence 4589999999999999999999 999999999988775432 124455677788877665 4888988641
Q ss_pred ---------CCCCCHHHHHHHHHHhcHHHHHHhc-ccc------------ccccccCCCCCCChHHHHHHHHHHHh-ccC
Q 047171 415 ---------KPGASMETVVKAAQAANVHDFIMKL-NDG------------YETKVGQFGVQLSGGQKQRIAIARAL-IRD 471 (1224)
Q Consensus 415 ---------~~~~~~~~~~~~~~~~~~~~~i~~l-~~g------------~~t~~~~~g~~LSgGq~qriaiARal-~~~ 471 (1224)
.+ .+.++... +..+ ..+ ++.....+...||| |+ ||+ +.+
T Consensus 103 ~~~~~il~g~~-~~~~~~~~----------l~~~~~~~~vi~L~~~~~~~l~r~~~r~~~~lSg----rv---~al~~~~ 164 (246)
T 2bbw_A 103 RGQHWLLDGFP-RTLGQAEA----------LDKICEVDLVISLNIPFETLKDRLSRRWIHPPSG----RV---YNLDFNP 164 (246)
T ss_dssp TTSCEEEESCC-CSHHHHHH----------HHTTCCCCEEEEEECCHHHHHHHHHTEEEETTTT----EE---EETTTSC
T ss_pred CCCeEEEECCC-CCHHHHHH----------HHhhcCCCEEEEEECCHHHHHHHHHcCCCcCCCC----Cc---cccccCC
Confidence 11 11211111 1111 001 11223445678999 66 888 999
Q ss_pred CCEEEEe----CCCCCCCHHHHHHHHHHHHHHc
Q 047171 472 PKILLLD----EATSALDAESERIVQEALDQAS 500 (1224)
Q Consensus 472 ~~ililD----E~ts~lD~~~~~~i~~~l~~~~ 500 (1224)
|++++|| |||+++|..++..+.+.+....
T Consensus 165 P~~lllD~~~~EP~~~ld~~~~~~i~~~l~~~~ 197 (246)
T 2bbw_A 165 PHVHGIDDVTGEPLVQQEDDKPEAVAARLRQYK 197 (246)
T ss_dssp CSSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHH
T ss_pred CcccccccccccccccCCCCcHHHHHHHHHHHH
Confidence 9999999 9999999999888888887654
No 246
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.15 E-value=2.1e-11 Score=141.93 Aligned_cols=165 Identities=16% Similarity=0.131 Sum_probs=101.8
Q ss_pred EEeEEEECCCCCCCCE--EEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcccEEecCCCCCCc-cc
Q 047171 330 FKDVDFSYPTRPDTPT--IGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFS-TS 406 (1224)
Q Consensus 330 ~~~v~f~y~~~~~~~~--~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~-~t 406 (1224)
+++|+|+. ++|.. +|||||||||||||+++|+|+. ++|.++...++...++.++|++|++.++. .|
T Consensus 30 L~~vsl~i---~~Gei~~vaLvG~nGaGKSTLln~L~G~~--------l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~lt 98 (427)
T 2qag_B 30 DQLVNKSV---SQGFCFNILCVGETGLGKSTLMDTLFNTK--------FEGEPATHTQPGVQLQSNTYDLQESNVRLKLT 98 (427)
T ss_dssp HHHHHHSC---C-CCEEEEEEECSTTSSSHHHHHHHHTSC--------C-------CCSSCEEEEEEEEEEC--CEEEEE
T ss_pred cCCCceEe---cCCCeeEEEEECCCCCCHHHHHHHHhCcc--------ccCCcCCCCCccceEeeEEEEeecCccccccc
Confidence 55566654 34667 9999999999999999999984 44555543333334568999999998874 59
Q ss_pred HHHHHhcCCCCCCHHH----HHHHHHHhcHHHHHHhc-------ccccccc-------ccCCCCCCChHHHHHHHHHHHh
Q 047171 407 IKENILIGKPGASMET----VVKAAQAANVHDFIMKL-------NDGYETK-------VGQFGVQLSGGQKQRIAIARAL 468 (1224)
Q Consensus 407 i~~ni~~g~~~~~~~~----~~~~~~~~~~~~~i~~l-------~~g~~t~-------~~~~g~~LSgGq~qriaiARal 468 (1224)
+.||+.||.. .+.+. +.+..+ ....+++... +..-|+. +-+.+..|+-.+ +.|+++|
T Consensus 99 v~D~~~~g~~-~~~~~~~~~i~~~i~-~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D---ieilk~L 173 (427)
T 2qag_B 99 IVSTVGFGDQ-INKEDSYKPIVEFID-AQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD---LVTMKKL 173 (427)
T ss_dssp EEEEECCCC--CCHHHHSHHHHHHHH-HHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH---HHHHHHT
T ss_pred hhhhhhhhhc-cccchhhhHHHHHHH-HHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH---HHHHHHH
Confidence 9999999864 23221 111111 1223333332 1111221 234455677776 8999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHH-Hc-CCCeEEEEeC
Q 047171 469 IRDPKILLLDEATSALDAESERIVQEALDQ-AS-QGRTMIIIAH 510 (1224)
Q Consensus 469 ~~~~~ililDE~ts~lD~~~~~~i~~~l~~-~~-~~~t~i~i~H 510 (1224)
..+++|+++|+|+..|.+.....+.+.+.+ +. .|.+++.++.
T Consensus 174 ~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~ 217 (427)
T 2qag_B 174 DSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPT 217 (427)
T ss_dssp CSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC-
T ss_pred hhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCC
Confidence 999999999999999988766666666665 43 5778887774
No 247
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.15 E-value=3.2e-11 Score=137.14 Aligned_cols=145 Identities=15% Similarity=0.104 Sum_probs=95.1
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHH----HHhc--ccEEecCCCCCCcc-cHHHHHhcC
Q 047171 342 DTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLK----WLRS--QMGLVNQEPILFST-SIKENILIG 414 (1224)
Q Consensus 342 ~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~----~~r~--~i~~v~Q~~~lf~~-ti~~ni~~g 414 (1224)
++.+++|+|||||||||+++.|+|++.|++|+|.++|.|+...... .+++ .+.+++|++.+++. +++||+.++
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~~ 207 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQHA 207 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHHHH
Confidence 4669999999999999999999999999999999999998766532 2334 45599999888765 899998653
Q ss_pred CCCCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHH
Q 047171 415 KPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQE 494 (1224)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~ililDE~ts~lD~~~~~~i~~ 494 (1224)
.. .+. +.+ =+|| .|... .-..=.++.-.++|++..++++++||.+|. .|.... + +
T Consensus 208 ~~-------------~~~-d~v-----liDt-aG~~~-~~~~l~~eL~~i~ral~~de~llvLDa~t~-~~~~~~--~-~ 262 (328)
T 3e70_C 208 KA-------------RGI-DVV-----LIDT-AGRSE-TNRNLMDEMKKIARVTKPNLVIFVGDALAG-NAIVEQ--A-R 262 (328)
T ss_dssp HH-------------HTC-SEE-----EEEE-CCSCC-TTTCHHHHHHHHHHHHCCSEEEEEEEGGGT-THHHHH--H-H
T ss_pred Hh-------------ccc-hhh-----HHhh-ccchh-HHHHHHHHHHHHHHHhcCCCCEEEEecHHH-HHHHHH--H-H
Confidence 10 000 000 0122 11110 011122344458999999999999996665 333221 1 1
Q ss_pred HHHHHcCCCeEEEEeCCc
Q 047171 495 ALDQASQGRTMIIIAHRL 512 (1224)
Q Consensus 495 ~l~~~~~~~t~i~i~H~l 512 (1224)
.+.+ ..+.|.|++||--
T Consensus 263 ~~~~-~~~it~iilTKlD 279 (328)
T 3e70_C 263 QFNE-AVKIDGIILTKLD 279 (328)
T ss_dssp HHHH-HSCCCEEEEECGG
T ss_pred HHHH-hcCCCEEEEeCcC
Confidence 1211 2478999999943
No 248
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.13 E-value=3.2e-11 Score=141.96 Aligned_cols=145 Identities=23% Similarity=0.364 Sum_probs=95.2
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCC----HH-H-HhcccEEecCCCCCC-cccHHHHHhcC
Q 047171 342 DTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQ----LK-W-LRSQMGLVNQEPILF-STSIKENILIG 414 (1224)
Q Consensus 342 ~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~----~~-~-~r~~i~~v~Q~~~lf-~~ti~~ni~~g 414 (1224)
.+.+++|||+||||||||++.|+|++.|++|+|.++|.|..... .. + .|++|+||+|++.++ ..++++|+.++
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~tV~e~l~~a 371 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAA 371 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHHHHHHHHHHH
Confidence 46699999999999999999999999999999999887764321 11 2 467899999998766 45999999764
Q ss_pred CCCCCHHHHHHHHHHhcHHHHHHhccccccccccCCC--CCCChHHHHHHHHHHHhcc-CC-CEEEEeCCCCCCCHHHHH
Q 047171 415 KPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFG--VQLSGGQKQRIAIARALIR-DP-KILLLDEATSALDAESER 490 (1224)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g--~~LSgGq~qriaiARal~~-~~-~ililDE~ts~lD~~~~~ 490 (1224)
... +. +.+ + +|| .|... .+|-.--+||+.++|++.. .| .+|+..+||++.|....
T Consensus 372 ~~~-------------~~-DvV--L---IDT-aGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq~al~~- 430 (503)
T 2yhs_A 372 KAR-------------NI-DVL--I---ADT-AGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQ- 430 (503)
T ss_dssp HHT-------------TC-SEE--E---ECC-CCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTHHHHHH-
T ss_pred Hhc-------------CC-CEE--E---EeC-CCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccHHHHHH-
Confidence 210 00 000 0 111 11110 1122233588999998764 45 46666668888665432
Q ss_pred HHHHHHHHHcCCCeEEEEeC
Q 047171 491 IVQEALDQASQGRTMIIIAH 510 (1224)
Q Consensus 491 ~i~~~l~~~~~~~t~i~i~H 510 (1224)
.+.+.+ .-+.|.+++||
T Consensus 431 --ak~f~~-~~~itgvIlTK 447 (503)
T 2yhs_A 431 --AKLFHE-AVGLTGITLTK 447 (503)
T ss_dssp --HHHHHH-HTCCSEEEEEC
T ss_pred --HHHHHh-hcCCCEEEEEc
Confidence 111221 23789999999
No 249
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.12 E-value=3.7e-11 Score=125.27 Aligned_cols=111 Identities=15% Similarity=0.172 Sum_probs=76.0
Q ss_pred eEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcceEEEecCCCCCcccHHHHHccCCC
Q 047171 1000 TLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIALVSQEPTLFAGTIRQNIVYGKE 1079 (1224)
Q Consensus 1000 sl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qdp~LF~gTIreNl~~~~~ 1079 (1224)
+|++++|+.++|+||+|+|||||++++.+.+.|.+|... .++ +..
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~------------------~~~---------~~~-------- 76 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRG------------------YFF---------DTK-------- 76 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCC------------------CEE---------EHH--------
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeE------------------EEE---------EHH--------
Confidence 567888999999999999999999999999876666311 110 111
Q ss_pred CCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeccCC-CCCHHHHHHHHHH
Q 047171 1080 VATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATS-ALDSASENLVQEA 1158 (1224)
Q Consensus 1080 ~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll~~p~ILlLDEaTS-aLD~~te~~I~~~ 1158 (1224)
++.+.+.. ....+ . .. -....+.+|++|+||||++ ++|+...+.+.+.
T Consensus 77 -----~~~~~~~~--------~~~~~--------~--~~--------~~~~~~~~~~llilDE~~~~~~~~~~~~~l~~l 125 (180)
T 3ec2_A 77 -----DLIFRLKH--------LMDEG--------K--DT--------KFLKTVLNSPVLVLDDLGSERLSDWQRELISYI 125 (180)
T ss_dssp -----HHHHHHHH--------HHHHT--------C--CS--------HHHHHHHTCSEEEEETCSSSCCCHHHHHHHHHH
T ss_pred -----HHHHHHHH--------HhcCc--------h--HH--------HHHHHhcCCCEEEEeCCCCCcCCHHHHHHHHHH
Confidence 11111110 00000 0 00 1122345999999999996 8999999999999
Q ss_pred HHHhc-CCCeEEEEccCch
Q 047171 1159 LEKMM-VGRTCVVVAHRLS 1176 (1224)
Q Consensus 1159 l~~~~-~~~TvI~IaHrl~ 1176 (1224)
+++.. +++++|++||...
T Consensus 126 l~~~~~~~~~ii~tsn~~~ 144 (180)
T 3ec2_A 126 ITYRYNNLKSTIITTNYSL 144 (180)
T ss_dssp HHHHHHTTCEEEEECCCCS
T ss_pred HHHHHHcCCCEEEEcCCCh
Confidence 98765 6899999999864
No 250
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=99.07 E-value=3.4e-13 Score=146.91 Aligned_cols=174 Identities=14% Similarity=0.151 Sum_probs=70.5
Q ss_pred ceeceeEEEeCCcEEEEEcCCCCChHHHHHHHh-ccc------------CCCCceEEECCccCCCCCHHHHhcceEEEec
Q 047171 995 IFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIE-RFY------------DPQSGSVMVDERNIKSYNLRKLRSCIALVSQ 1061 (1224)
Q Consensus 995 vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~-rl~------------~p~~G~I~idG~di~~~~~~~lR~~i~~V~Q 1061 (1224)
..+++||++++|+.++|+|||||||||++++|. |++ +|..|++ +|.+....+...++.. ..+
T Consensus 16 ~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~~~~~~~~~~~~~~~g~~--~g~~~~~~~~~~~~~~---~~~ 90 (231)
T 3lnc_A 16 TQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNNIVKSVSVTTRAARKGEK--EGKDYYFVDREEFLRL---CSN 90 (231)
T ss_dssp ------CCEECCCEEEEECSCC----CHHHHHHC----CEEECCCEESSCCCTTCC--BTTTBEECCHHHHHHH---HHT
T ss_pred ccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCCcccccccCCCCCCcccc--CCCeEEEecHHHhhhh---hhc
Confidence 578999999999999999999999999999999 998 5555544 4444333333333221 112
Q ss_pred CCCCCcccHHHHHccCCCCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCCh--HHHHHH-HHHH-HHccCCCE
Q 047171 1062 EPTLFAGTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSG--GQKQRI-ALAR-AVLKNPMI 1137 (1224)
Q Consensus 1062 dp~LF~gTIreNl~~~~~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSG--GQrQRl-aLAR-All~~p~I 1137 (1224)
+..++.+++..|+ ++.+. +++.++++. |....+.- .+.| .-++++ .-++ .++..|+.
T Consensus 91 ~~~~~~~~~~~~~-~~~~~---~~i~~~~~~------------~~~vild~---~~~g~~~~~~~~~~~~~~v~v~~~~~ 151 (231)
T 3lnc_A 91 GEIIEHAEVFGNF-YGVPR---KNLEDNVDK------------GVSTLLVI---DWQGAFKFMEMMREHVVSIFIMPPSM 151 (231)
T ss_dssp TCEEEEEEETTEE-EEEEC---TTHHHHHHH------------TCEEEEEC---CHHHHHHHHHHSGGGEEEEEEECSCH
T ss_pred Cceehhhhhcccc-CCCCH---HHHHHHHHc------------CCeEEEEc---CHHHHHHHHHhcCCCeEEEEEECCcH
Confidence 2222223333332 22221 223333322 11111100 0011 113333 2222 34667788
Q ss_pred EEEeccCCCCCHHHHHHHHHHHHHhcC------CCeEEEEccCchhh-hhcCEEEEEeCCEE
Q 047171 1138 LLLDEATSALDSASENLVQEALEKMMV------GRTCVVVAHRLSTI-QKADNIVVIKNGKV 1192 (1224)
Q Consensus 1138 LlLDEaTSaLD~~te~~I~~~l~~~~~------~~TvI~IaHrl~ti-~~aD~I~vl~~G~I 1192 (1224)
.++||+.++.|..+++.+++.|++... ....+++.|.++.+ +..++++...+++.
T Consensus 152 ~~l~~Rl~~R~~~~~~~i~~rl~~~~~~~~~~~~~d~vI~n~~~e~~~~~l~~~i~~~~~~~ 213 (231)
T 3lnc_A 152 EELRRRLCGRRADDSEVVEARLKGAAFEISHCEAYDYVIVNEDIEETADRISNILRAEQMKT 213 (231)
T ss_dssp HHHHHC--------------CHHHHHHHHTTGGGSSEEEECSSHHHHHHHHHHHHHHHHTBG
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhhcCCeEEEECcCHHHHHHHHHHHHHHHhhcc
Confidence 889999999999998888877754431 23455555554433 22444443333333
No 251
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.06 E-value=5.9e-13 Score=148.49 Aligned_cols=143 Identities=17% Similarity=0.168 Sum_probs=104.0
Q ss_pred cceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcceEEEecCC-CCC-cccHH
Q 047171 994 MIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIALVSQEP-TLF-AGTIR 1071 (1224)
Q Consensus 994 ~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qdp-~LF-~gTIr 1071 (1224)
.+++++++++++| ++|+||+|||||||+++|.+...+ |.|.++|.++........++++++++|++ ..+ .-++.
T Consensus 34 ~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i~~~ 109 (274)
T 2x8a_A 34 DQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL--NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFF 109 (274)
T ss_dssp HHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC--EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEEEEE
T ss_pred HHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCeEee
Confidence 4789999999999 999999999999999999999876 79999999987776777788899999986 333 34677
Q ss_pred HHHccCCCCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeccCC------
Q 047171 1072 QNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATS------ 1145 (1224)
Q Consensus 1072 eNl~~~~~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll~~p~ILlLDEaTS------ 1145 (1224)
||++...+...+.+.. . ..+.. +..+ ..|||||+||..+++|+..+|++| |||..
T Consensus 110 Deid~~~~~r~~~~~~-~-----~~~~~-------~~~l----~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~r~gRfd 170 (274)
T 2x8a_A 110 DEVDALCPRRSDRETG-A-----SVRVV-------NQLL----TEMDGLEARQQVFIMAATNRPDII--DPAILRPGRLD 170 (274)
T ss_dssp ETCTTTCC---------------CTTHH-------HHHH----HHHHTCCSTTCEEEEEEESCGGGS--CHHHHSTTSSC
T ss_pred ehhhhhhcccCCCcch-H-----HHHHH-------HHHH----HhhhcccccCCEEEEeecCChhhC--CHhhcCcccCC
Confidence 8887643321111100 0 01111 1111 248999999999999999999984 99975
Q ss_pred ------CCCHHHHHHHHHHH
Q 047171 1146 ------ALDSASENLVQEAL 1159 (1224)
Q Consensus 1146 ------aLD~~te~~I~~~l 1159 (1224)
--|.+.+..|.+.+
T Consensus 171 ~~i~~~~P~~~~r~~il~~~ 190 (274)
T 2x8a_A 171 KTLFVGLPPPADRLAILKTI 190 (274)
T ss_dssp EEEECCSCCHHHHHHHHHHH
T ss_pred eEEEeCCcCHHHHHHHHHHH
Confidence 23566666666654
No 252
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=99.06 E-value=9.1e-11 Score=136.86 Aligned_cols=145 Identities=12% Similarity=0.173 Sum_probs=91.7
Q ss_pred CCCCEEEEEcCCCCcHHHHHHH--HhcCCCCCCc-----EEEECCEec-CCCCHHHHhcccEEecCCCCCCcccHHHHHh
Q 047171 341 PDTPTIGLVGSSGSGKSTVISL--LERFYDPVKG-----NILLDGHKI-KKLQLKWLRSQMGLVNQEPILFSTSIKENIL 412 (1224)
Q Consensus 341 ~~~~~~~ivG~sGsGKSTl~~l--l~~~~~~~~G-----~i~~~g~~~-~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~ 412 (1224)
+++.+++|+||||||||||++. +.+..+++.| .+++++.+. .......+++++++.+| ++.+|+.
T Consensus 176 ~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~-------~vleni~ 248 (400)
T 3lda_A 176 ETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPD-------DALNNVA 248 (400)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHH-------HHHHTEE
T ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChH-------hHhhcEE
Confidence 4577999999999999999994 4577776444 889988763 11122334456776554 6778877
Q ss_pred cCCCCCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHh--ccCCCEEEEeCCCCCCCHHHH-
Q 047171 413 IGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARAL--IRDPKILLLDEATSALDAESE- 489 (1224)
Q Consensus 413 ~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal--~~~~~ililDE~ts~lD~~~~- 489 (1224)
+..+. +.++..+. +.-++.+ -.+|+++++||||+.+|++..
T Consensus 249 ~~~~~-~~~~~~~~-----------------------------------l~~~~~~l~~~~~~llVIDs~t~~~~~~~sg 292 (400)
T 3lda_A 249 YARAY-NADHQLRL-----------------------------------LDAAAQMMSESRFSLIVVDSVMALYRTDFSG 292 (400)
T ss_dssp EEECC-SHHHHHHH-----------------------------------HHHHHHHHHHSCEEEEEEETGGGGCC-----
T ss_pred EeccC-ChHHHHHH-----------------------------------HHHHHHHHHhcCCceEEecchhhhCchhhcC
Confidence 76542 22222111 1111111 147999999999999997533
Q ss_pred -----------HHHHHHHHHHc--CCCeEEEEeCCcc-------------------hhhc-cCEEEEEeCce
Q 047171 490 -----------RIVQEALDQAS--QGRTMIIIAHRLS-------------------TIRK-ADLIGVLQSGR 528 (1224)
Q Consensus 490 -----------~~i~~~l~~~~--~~~t~i~i~H~l~-------------------~~~~-ad~i~vl~~G~ 528 (1224)
..+.+.|.++. .|.|+|+|+|-.. .+.+ +|.+++|++|+
T Consensus 293 ~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~~~~ 364 (400)
T 3lda_A 293 RGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGFKKGK 364 (400)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHHHHCSEEEEEEECS
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHHHhcceEEEEEecC
Confidence 34555555543 3899999999822 2344 89999998763
No 253
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.06 E-value=1.3e-11 Score=139.51 Aligned_cols=114 Identities=16% Similarity=0.106 Sum_probs=78.7
Q ss_pred EEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEE---CCccCCCCCHHHHh-cceEEEecCCCCC------cccHH
Q 047171 1002 KIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMV---DERNIKSYNLRKLR-SCIALVSQEPTLF------AGTIR 1071 (1224)
Q Consensus 1002 ~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~i---dG~di~~~~~~~lR-~~i~~V~Qdp~LF------~gTIr 1071 (1224)
++.+|++++|+||||||||||+++|. +.+|.+|+|.+ +|.++.... ...+ +.+++|+|+|-+. ..|+
T Consensus 161 ~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~-~~~~~~~~g~v~d~pg~~~~~l~~~lt~- 237 (302)
T 2yv5_A 161 DYLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGV-RLIPFGKGSFVGDTPGFSKVEATMFVKP- 237 (302)
T ss_dssp HHTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCE-EEEEETTTEEEESSCCCSSCCGGGTSCG-
T ss_pred hhccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeE-EEEEcCCCcEEEECcCcCcCcccccCCH-
Confidence 44579999999999999999999999 99999999999 999887643 2223 3799999999652 4578
Q ss_pred HHH--ccC---------C---C-CCCHHHHHHHHHHHhHHH-HHHhcccccccccCCCCCCCChHHHHHHHHHH
Q 047171 1072 QNI--VYG---------K---E-VATEAEIRKAAVLANAHE-FISSTEDGYDTYCGERGVQLSGGQKQRIALAR 1129 (1224)
Q Consensus 1072 eNl--~~~---------~---~-~~~deei~~al~~a~l~~-~I~~lp~gldt~vge~G~~LSGGQrQRlaLAR 1129 (1224)
||+ .++ . + ....+.+.++++..++.+ ...+.| ..|||.+++++.|||
T Consensus 238 e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~-----------~~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 238 REVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYL-----------KIIKVYLEEIKELCR 300 (302)
T ss_dssp GGGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHH-----------HHTTCCCTTHHHHSS
T ss_pred HHHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHH-----------HHHHHHHHHHHHHhc
Confidence 888 443 1 1 112356778887777754 333322 248998888999987
No 254
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.05 E-value=1.5e-10 Score=116.45 Aligned_cols=86 Identities=15% Similarity=0.230 Sum_probs=64.1
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCCCCCCc--EEEECCEecCCCCHHHHhcccEEecCCCCCCcccHHHHHhcCCCCCC
Q 047171 342 DTPTIGLVGSSGSGKSTVISLLERFYDPVKG--NILLDGHKIKKLQLKWLRSQMGLVNQEPILFSTSIKENILIGKPGAS 419 (1224)
Q Consensus 342 ~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G--~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~g~~~~~ 419 (1224)
+++.++|+||+|||||||++++.+.+.+ +| .+++++.++...
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~-~g~~~~~~~~~~~~~~----------------------------------- 78 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALE-AGKNAAYIDAASMPLT----------------------------------- 78 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHT-TTCCEEEEETTTSCCC-----------------------------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHh-cCCcEEEEcHHHhhHH-----------------------------------
Confidence 3568999999999999999999999887 57 555554322110
Q ss_pred HHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 047171 420 METVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQA 499 (1224)
Q Consensus 420 ~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~ 499 (1224)
+++.+|++|+||||++ +|...++.+.+.+...
T Consensus 79 -----------------------------------------------~~~~~~~lLilDE~~~-~~~~~~~~l~~li~~~ 110 (149)
T 2kjq_A 79 -----------------------------------------------DAAFEAEYLAVDQVEK-LGNEEQALLFSIFNRF 110 (149)
T ss_dssp -----------------------------------------------GGGGGCSEEEEESTTC-CCSHHHHHHHHHHHHH
T ss_pred -----------------------------------------------HHHhCCCEEEEeCccc-cChHHHHHHHHHHHHH
Confidence 2457899999999998 5554477788888765
Q ss_pred c-CCCe-EEEEeCC
Q 047171 500 S-QGRT-MIIIAHR 511 (1224)
Q Consensus 500 ~-~~~t-~i~i~H~ 511 (1224)
. +|++ +|++||+
T Consensus 111 ~~~g~~~iiits~~ 124 (149)
T 2kjq_A 111 RNSGKGFLLLGSEY 124 (149)
T ss_dssp HHHTCCEEEEEESS
T ss_pred HHcCCcEEEEECCC
Confidence 4 4688 7777775
No 255
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=99.01 E-value=4.3e-12 Score=148.90 Aligned_cols=120 Identities=22% Similarity=0.206 Sum_probs=81.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCC----CHHHHhcccEEec---------CCCCCC--c---
Q 047171 343 TPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKL----QLKWLRSQMGLVN---------QEPILF--S--- 404 (1224)
Q Consensus 343 ~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~----~~~~~r~~i~~v~---------Q~~~lf--~--- 404 (1224)
+..++|+|||||||||++++|+|+++|++|+|.+.|.++... +...+++++++.+ |+|.++ .
T Consensus 167 ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~~Lrq~pd~i~vgEiR 246 (418)
T 1p9r_A 167 HGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRAILRQDPDVVMVGEIR 246 (418)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHHHGGGCCSEEEESCCC
T ss_pred CCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEccccCcCHHHHHHHHhccCCCeEEEcCcC
Confidence 448999999999999999999999999999999998776321 1122345566655 998653 2
Q ss_pred --ccHHHHHhcCCCC---------CCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCC
Q 047171 405 --TSIKENILIGKPG---------ASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPK 473 (1224)
Q Consensus 405 --~ti~~ni~~g~~~---------~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~ 473 (1224)
.|+.+|+.++... .+..+....+.. + |++... ...+|||||+|| |||+++.+|+
T Consensus 247 d~et~~~~l~a~~tGhlv~~tlh~~~~~~~i~rL~~---------l--gl~~~~--~~~~LSgg~~QR--LaraL~~~p~ 311 (418)
T 1p9r_A 247 DLETAQIAVQASLTGHLVMSTLHTNTAVGAVTRLRD---------M--GIEPFL--ISSSLLGVLAQR--LVRTLCPDCK 311 (418)
T ss_dssp SHHHHHHHHHHHHTTCEEEEEECCSSSHHHHHHHHH---------H--TCCHHH--HHHHEEEEEEEE--EEEEECTTTC
T ss_pred CHHHHHHHHHHHHhCCCcccccchhhHHHHHHHHHH---------c--CCcHHH--HHHHHHHHHHHH--hhhhhcCCCC
Confidence 3888988763210 111122222221 1 222211 346799999999 9999999999
Q ss_pred EEEE
Q 047171 474 ILLL 477 (1224)
Q Consensus 474 ilil 477 (1224)
+..-
T Consensus 312 ~~~~ 315 (418)
T 1p9r_A 312 EPYE 315 (418)
T ss_dssp EEEE
T ss_pred ccCC
Confidence 9763
No 256
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=98.99 E-value=3.2e-12 Score=154.02 Aligned_cols=160 Identities=13% Similarity=0.155 Sum_probs=103.6
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcccEEecCCCCCCc-ccHHHHHhcC---CC--
Q 047171 343 TPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFS-TSIKENILIG---KP-- 416 (1224)
Q Consensus 343 ~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~-~ti~~ni~~g---~~-- 416 (1224)
+..++|+|||||||||++++|+|+++|++|.|.++|.+--..+ -++.++++.|+..... .|..+++... +|
T Consensus 260 g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~---~~~~v~~~~r~~~~~~~~~~~~~l~~~LR~~PD~ 336 (511)
T 2oap_1 260 KFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLY---HENWIAEVTRTGMGEGEIDMYDLLRAALRQRPDY 336 (511)
T ss_dssp TCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCC---CSSEEEEECBCCSSSCCBCHHHHHHTTGGGCCSE
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCC---CCCeEEEEeecccccCCcCHHHHHHHhhccCCCe
Confidence 4479999999999999999999999999999999886522221 1345777877765221 2677776432 22
Q ss_pred ----CCCHHHHHHHHHHhc-------------HHHHHHhcc---cccccccc-------CCCCCCChHHHHHHHHHHHhc
Q 047171 417 ----GASMETVVKAAQAAN-------------VHDFIMKLN---DGYETKVG-------QFGVQLSGGQKQRIAIARALI 469 (1224)
Q Consensus 417 ----~~~~~~~~~~~~~~~-------------~~~~i~~l~---~g~~t~~~-------~~g~~LSgGq~qriaiARal~ 469 (1224)
+.+.+|...+.+.+. +.+.+.++. .|....+. .....+|||||||.++|.
T Consensus 337 iivgEir~~E~~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~~~~~s~G~~~R~~~ai--- 413 (511)
T 2oap_1 337 IIVGEVRGREAQTLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLDIALVQTMWVRGNTRLRRTKEV--- 413 (511)
T ss_dssp EEESCCCSTHHHHHHHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEEEEEESSSCEEEEEEEE---
T ss_pred EEeCCcCHHHHHHHHHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHhhccEEEEEEEEEeCCCceEEEEEE---
Confidence 234444444443332 344444442 23222111 223468999999987752
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEE--EeCCcchhhc
Q 047171 470 RDPKILLLDEATSALDAESERIVQEALDQAS-QGRTMII--IAHRLSTIRK 517 (1224)
Q Consensus 470 ~~~~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~--i~H~l~~~~~ 517 (1224)
+ | |++||+++.+.+.+.+.++. .++|+++ +||+++.+..
T Consensus 414 -------~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~ei~~ 455 (511)
T 2oap_1 414 -------N-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLEKMAD 455 (511)
T ss_dssp -------E-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHHHHHH
T ss_pred -------E-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHHHHHH
Confidence 1 6 99999987666655555543 4788875 8999998864
No 257
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.99 E-value=3.3e-11 Score=141.15 Aligned_cols=153 Identities=17% Similarity=0.143 Sum_probs=93.6
Q ss_pred eeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcceEEEecCCCCCcccHHHHHc
Q 047171 996 FKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIALVSQEPTLFAGTIRQNIV 1075 (1224)
Q Consensus 996 L~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qdp~LF~gTIreNl~ 1075 (1224)
-++++|+++.|+.|+|||++|||||||++.|.+..+ .+.+.+...+ ...+++|+|+.. ...++.|+.-
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~------~i~~~~ftTl-----~p~~G~V~~~~~-~~~~l~DtpG 214 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP------KIAPYPFTTL-----SPNLGVVEVSEE-ERFTLADIPG 214 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC------EECCCTTCSS-----CCEEEEEECSSS-CEEEEEECCC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc------cccCccccee-----cceeeEEEecCc-ceEEEEeccc
Confidence 489999999999999999999999999999999743 4555554433 345788887751 1122323221
Q ss_pred cCC-----CCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeccCCCCCHH
Q 047171 1076 YGK-----EVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSA 1150 (1224)
Q Consensus 1076 ~~~-----~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll~~p~ILlLDEaTSaLD~~ 1150 (1224)
+.. ......-. +..+.+ +..+ .-+|.. .+...+||+||+||+++||+|..+|.||++ +.+|..
T Consensus 215 li~~a~~~~~L~~~fl-~~~era--~~lL----~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~ 282 (416)
T 1udx_A 215 IIEGASEGKGLGLEFL-RHIART--RVLL----YVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLL 282 (416)
T ss_dssp CCCCGGGSCCSCHHHH-HHHTSS--SEEE----EEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTS
T ss_pred cccchhhhhhhhHHHH-HHHHHH--Hhhh----EEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChh
Confidence 110 00111111 100000 0001 011111 122346999999999999999999999999 899987
Q ss_pred HHHHHHHHHHHhc-CCCeEEEEc
Q 047171 1151 SENLVQEALEKMM-VGRTCVVVA 1172 (1224)
Q Consensus 1151 te~~I~~~l~~~~-~~~TvI~Ia 1172 (1224)
....+.+..+.+. .+.+++.||
T Consensus 283 ~~~~~~~l~~~l~~~g~~vi~iS 305 (416)
T 1udx_A 283 EEEAVKALADALAREGLAVLPVS 305 (416)
T ss_dssp CHHHHHHHHHHHHTTTSCEEECC
T ss_pred hHHHHHHHHHHHHhcCCeEEEEE
Confidence 6533333333222 366888776
No 258
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.97 E-value=2.6e-11 Score=139.15 Aligned_cols=154 Identities=17% Similarity=0.226 Sum_probs=98.8
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCC----HHHHhcccEEecCCCCCCcc------------
Q 047171 342 DTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQ----LKWLRSQMGLVNQEPILFST------------ 405 (1224)
Q Consensus 342 ~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~----~~~~r~~i~~v~Q~~~lf~~------------ 405 (1224)
.+.+++|+|+||||||||++.|+|++.|++|+|.+.|.|+.... ....|.++++++|++.+|..
T Consensus 54 ~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~G~t 133 (337)
T 2qm8_A 54 RAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTLGGVA 133 (337)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhhheeeccCcccccccCcccccccchH
Confidence 46699999999999999999999999999999999999885432 12356789999999988752
Q ss_pred -cHHHHHh-c---CC-------CCC--CHHHHHHHHHH-------------hcHHHHHHhcccccc-ccccC-CCCCCCh
Q 047171 406 -SIKENIL-I---GK-------PGA--SMETVVKAAQA-------------ANVHDFIMKLNDGYE-TKVGQ-FGVQLSG 456 (1224)
Q Consensus 406 -ti~~ni~-~---g~-------~~~--~~~~~~~~~~~-------------~~~~~~i~~l~~g~~-t~~~~-~g~~LSg 456 (1224)
+++|.+. + |. +.. +...+.+.++. ..+.+.+...|.-+- +.+.. ....+|+
T Consensus 134 r~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~~~~~~~~i~~~i~~~~~ivvlNK~Dl~~~~~~s~ 213 (337)
T 2qm8_A 134 AKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPGAGDELQGIKKGIFELADMIAVNKADDGDGERRAS 213 (337)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSCC------CCTTHHHHCSEEEEECCSTTCCHHHHH
T ss_pred HHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCCCcccHHHHHHHHhccccEEEEEchhccCchhHHH
Confidence 2333321 0 00 000 11111100000 000000111221110 11111 1245799
Q ss_pred HHHHHHHHHHHhcc------CCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 047171 457 GQKQRIAIARALIR------DPKILLLDEATSALDAESERIVQEALDQA 499 (1224)
Q Consensus 457 Gq~qriaiARal~~------~~~ililDE~ts~lD~~~~~~i~~~l~~~ 499 (1224)
|++|+++.|++++. +|+++. |||+|.+.-..+.+.|.+.
T Consensus 214 ~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~ 258 (337)
T 2qm8_A 214 AAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDH 258 (337)
T ss_dssp HHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHH
Confidence 99999999999987 688887 9999999888888888664
No 259
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=98.97 E-value=1.5e-11 Score=133.46 Aligned_cols=128 Identities=18% Similarity=0.191 Sum_probs=102.7
Q ss_pred CcEEEEEcCCCCChHHHHHHHhccc---CCCCceEEE--------CCccCCC-CCHHHHhcceEEEecCC------CCCc
Q 047171 1006 GKTVALVGQSGSGKSTIIGLIERFY---DPQSGSVMV--------DERNIKS-YNLRKLRSCIALVSQEP------TLFA 1067 (1224)
Q Consensus 1006 Ge~vaIVG~SGsGKSTL~~lL~rl~---~p~~G~I~i--------dG~di~~-~~~~~lR~~i~~V~Qdp------~LF~ 1067 (1224)
+.+++|+|++||||||++++|.+.+ .++.|.+.. +|.++.+ ....++++++++++|++ .++.
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 84 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVSTNGNLEVILEG 84 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEETTEEEEEETT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeeccCCCceEEECC
Confidence 5689999999999999999999877 678899887 7877653 45677899999999987 4566
Q ss_pred ccHHHHHccCCCCCCHHHHHHHHHHHhHHHHHHhcccccccccC-CCCCCCChHHHHHHHHHHHHccCCCEEEEeccCC
Q 047171 1068 GTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCG-ERGVQLSGGQKQRIALARAVLKNPMILLLDEATS 1145 (1224)
Q Consensus 1068 gTIreNl~~~~~~~~deei~~al~~a~l~~~I~~lp~gldt~vg-e~G~~LSGGQrQRlaLARAll~~p~ILlLDEaTS 1145 (1224)
.++.+++. ++++.+++..+..++++.....+..+.+. ++|.-++|+ .++++++++++++|+.+++.
T Consensus 85 ~~v~~~~~-------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~vldg~-----~~~~~~~~~~d~~i~l~~~~ 151 (227)
T 1cke_A 85 EDVSGEIR-------TQEVANAASQVAAFPRVREALLRRQRAFRELPGLIADGR-----DMGTVVFPDAPVKIFLDASS 151 (227)
T ss_dssp EECHHHHT-------SHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCEEEEES-----SCCCCCCTTCSEEEEEECCH
T ss_pred eeCchhhC-------CHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEECC-----CccceEecCCCEEEEEeCCH
Confidence 67877763 46788888899999999887777666553 456678887 46677889999999988754
No 260
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.96 E-value=7.9e-11 Score=133.13 Aligned_cols=112 Identities=13% Similarity=0.092 Sum_probs=71.7
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEE---CCEecCCCCHHHHh-cccEEecCCCCCC------cccHHHHH
Q 047171 342 DTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILL---DGHKIKKLQLKWLR-SQMGLVNQEPILF------STSIKENI 411 (1224)
Q Consensus 342 ~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~---~g~~~~~~~~~~~r-~~i~~v~Q~~~lf------~~ti~~ni 411 (1224)
.+.+++|+||||||||||+|+|. ..+|++|+|.+ +|+++..... ..+ +.+|||+|+|.+. .-|+ ||+
T Consensus 164 ~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~-~~~~~~~g~v~d~pg~~~~~l~~~lt~-e~l 240 (302)
T 2yv5_A 164 EGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVR-LIPFGKGSFVGDTPGFSKVEATMFVKP-REV 240 (302)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEE-EEEETTTEEEESSCCCSSCCGGGTSCG-GGG
T ss_pred cCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEE-EEEcCCCcEEEECcCcCcCcccccCCH-HHH
Confidence 35699999999999999999999 99999999999 9988765432 222 3699999999542 3478 888
Q ss_pred --hcCC------------C-CCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHH
Q 047171 412 --LIGK------------P-GASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIAR 466 (1224)
Q Consensus 412 --~~g~------------~-~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiAR 466 (1224)
.|+. + ......+.++++..++.+ .........|||.+++++.|||
T Consensus 241 ~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~----------~~~~~~~~~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 241 RNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISC----------ERYKSYLKIIKVYLEEIKELCR 300 (302)
T ss_dssp GGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCH----------HHHHHHHHHTTCCCTTHHHHSS
T ss_pred HHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCH----------HHHHHHHHHHHHHHHHHHHHhc
Confidence 4531 0 011123444444333322 0223334579998899999987
No 261
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.91 E-value=1.9e-09 Score=121.15 Aligned_cols=142 Identities=17% Similarity=0.127 Sum_probs=100.6
Q ss_pred EEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcceE
Q 047171 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIA 1057 (1224)
Q Consensus 978 I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~ 1057 (1224)
+.++++++.|+.. . ++++|+ +|+.++++|++|+||||++..|.+.+.+..|+|.+.+.|+..-...+
T Consensus 77 ~~~~~l~~~~~~~---~--~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~------ 143 (295)
T 1ls1_A 77 TVYEALKEALGGE---A--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAARE------ 143 (295)
T ss_dssp HHHHHHHHHTTSS---C--CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHH------
T ss_pred HHHHHHHHHHCCC---C--ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHH------
Confidence 4556677777422 1 678888 99999999999999999999999999999999999888765311110
Q ss_pred EEecCCCCCcccHHHHHccCCCCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHccCCCE
Q 047171 1058 LVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMI 1137 (1224)
Q Consensus 1058 ~V~Qdp~LF~gTIreNl~~~~~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll~~p~I 1137 (1224)
++....+.. |++-... +..-...+-||.+|+++..+++++
T Consensus 144 ---------------------------ql~~~~~~~-----------~l~~~~~--~~~~~p~~l~~~~l~~~~~~~~D~ 183 (295)
T 1ls1_A 144 ---------------------------QLRLLGEKV-----------GVPVLEV--MDGESPESIRRRVEEKARLEARDL 183 (295)
T ss_dssp ---------------------------HHHHHHHHH-----------TCCEEEC--CTTCCHHHHHHHHHHHHHHHTCCE
T ss_pred ---------------------------HHHHhcccC-----------CeEEEEc--CCCCCHHHHHHHHHHHHHhCCCCE
Confidence 000001111 2221111 112344566899999998899999
Q ss_pred EEEecc-CCCCCHHHHHHHHHHHHHhcCCCeEEEEc
Q 047171 1138 LLLDEA-TSALDSASENLVQEALEKMMVGRTCVVVA 1172 (1224)
Q Consensus 1138 LlLDEa-TSaLD~~te~~I~~~l~~~~~~~TvI~Ia 1172 (1224)
+|+||| ++++|...-..+.+..+....+.+++++.
T Consensus 184 viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~ 219 (295)
T 1ls1_A 184 ILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLD 219 (295)
T ss_dssp EEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEE
T ss_pred EEEeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEe
Confidence 999999 99999988888888877666666666554
No 262
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.91 E-value=2e-10 Score=129.92 Aligned_cols=103 Identities=16% Similarity=0.123 Sum_probs=69.4
Q ss_pred EEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEE---CCccCCCCCHHHHhcceEEEecCCCC------------
Q 047171 1001 LKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMV---DERNIKSYNLRKLRSCIALVSQEPTL------------ 1065 (1224)
Q Consensus 1001 l~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~i---dG~di~~~~~~~lR~~i~~V~Qdp~L------------ 1065 (1224)
|++.+|+.++|+||||||||||+++|.|+..|++|+|.+ +|.++.........+++++|+|+|.+
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~~ 243 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEE 243 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHHH
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHHH
Confidence 456679999999999999999999999999999999999 99988765422112469999999953
Q ss_pred ----C-cccHHHHHccCCC---CCCHHHHHHHHHHHhH-HHHHHhccc
Q 047171 1066 ----F-AGTIRQNIVYGKE---VATEAEIRKAAVLANA-HEFISSTED 1104 (1224)
Q Consensus 1066 ----F-~gTIreNl~~~~~---~~~deei~~al~~a~l-~~~I~~lp~ 1104 (1224)
| ..|+ +|+.++.. ......+.++++..++ .+...+.|.
T Consensus 244 ~~~l~~~~~~-~n~~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~ 290 (301)
T 1u0l_A 244 LKHYFKEFGD-KQCFFSDCNHVDEPECGVKEAVENGEIAESRYENYVK 290 (301)
T ss_dssp HGGGSTTSSS-CCCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHHHH
T ss_pred HHHHHHhccc-ccCcCCCCcCCCCCCcHHHHHHHcCCCCHHHHHHHHH
Confidence 4 3477 88887521 1234578899999988 466665554
No 263
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.91 E-value=3.2e-11 Score=137.00 Aligned_cols=140 Identities=14% Similarity=0.142 Sum_probs=96.8
Q ss_pred cccEEEEEEEEECCCCCCccceeceeEEE-------------------eCCcEEEEEcCCCCChHHHHHHHhcccC--CC
Q 047171 975 KGFIELKNVFFSYPSRPDQMIFKGLTLKI-------------------EAGKTVALVGQSGSGKSTIIGLIERFYD--PQ 1033 (1224)
Q Consensus 975 ~g~I~~~~vsf~Y~~~~~~~vL~~isl~I-------------------~~Ge~vaIVG~SGsGKSTL~~lL~rl~~--p~ 1033 (1224)
++.|+++||++.|. ++++++|+.+ ++|+++||+|+||||||||+++|.|++. |+
T Consensus 35 ~~~i~~~~v~~~y~-----~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~ 109 (308)
T 1sq5_A 35 NEDLSLEEVAEIYL-----PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPE 109 (308)
T ss_dssp CTTCCHHHHHHTHH-----HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTT
T ss_pred ccccchHhHHHHHH-----HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCC
Confidence 35699999999993 5899999998 8999999999999999999999999998 99
Q ss_pred CceEEE---CCccCCCCCHHHHhcceEEEecCCCCC-cccHHHHHccCCCCCCHHHHHHHHHHHhHHHHHHhcccccccc
Q 047171 1034 SGSVMV---DERNIKSYNLRKLRSCIALVSQEPTLF-AGTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTY 1109 (1224)
Q Consensus 1034 ~G~I~i---dG~di~~~~~~~lR~~i~~V~Qdp~LF-~gTIreNl~~~~~~~~deei~~al~~a~l~~~I~~lp~gldt~ 1109 (1224)
+|+|.+ ||.+.. ...++.++++ |+..++ .-|+.+|+.+... + ..-.+ -...| -++
T Consensus 110 ~G~i~vi~~d~~~~~----~~~~~~~~~v-q~~~~~~~~~~~~~~~~~~~------l------~~~~~-~i~~P-~~~-- 168 (308)
T 1sq5_A 110 HRRVELITTDGFLHP----NQVLKERGLM-KKKGFPESYDMHRLVKFVSD------L------KSGVP-NVTAP-VYS-- 168 (308)
T ss_dssp CCCEEEEEGGGGBCC----HHHHHHHTCT-TCTTSGGGBCHHHHHHHHHH------H------TTTCS-CEEEC-CEE--
T ss_pred CCeEEEEecCCccCc----HHHHHhCCEe-ecCCCCCCccHHHHHHHHHH------H------hCCCC-ceecc-ccc--
Confidence 999999 998742 2456778999 766553 3467777653210 0 00000 00111 122
Q ss_pred cCCCCCCCChHHHHHHHHHHHHccCCCEEEEeccCCCCCH
Q 047171 1110 CGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDS 1149 (1224)
Q Consensus 1110 vge~G~~LSGGQrQRlaLARAll~~p~ILlLDEaTSaLD~ 1149 (1224)
.+.+ +|+..+.+.+.+++++|+|.|....|.
T Consensus 169 -------~~~~--~~~~~~~~~~~~~~ivIlEG~~l~~~~ 199 (308)
T 1sq5_A 169 -------HLIY--DVIPDGDKTVVQPDILILEGLNVLQSG 199 (308)
T ss_dssp -------TTTT--EECTTCCEEEC-CCEEEEECTTTTCCG
T ss_pred -------cccc--CcccccceecCCCCEEEECchhhCCCc
Confidence 1222 333333355678899999999887763
No 264
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=98.91 E-value=1.5e-10 Score=127.64 Aligned_cols=109 Identities=17% Similarity=0.157 Sum_probs=80.2
Q ss_pred cceeceeEEEeCCcEEEEEcCCCCChHHHHHHHh---cccCCCCceEE--------ECCccC-CCCCHHHHhcceEEEec
Q 047171 994 MIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIE---RFYDPQSGSVM--------VDERNI-KSYNLRKLRSCIALVSQ 1061 (1224)
Q Consensus 994 ~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~---rl~~p~~G~I~--------idG~di-~~~~~~~lR~~i~~V~Q 1061 (1224)
.++++.+ ++|++++|+|||||||||++++|. |++.|++|.|. .+|.++ .......+++++++++|
T Consensus 18 ~~~~~m~---~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 94 (252)
T 4e22_A 18 LERPHMT---AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFV 94 (252)
T ss_dssp -----CT---TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEE
T ss_pred hhhhhcC---CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEe
Confidence 3455544 789999999999999999999999 99999999999 999998 45668889999999996
Q ss_pred CC------CCCcccHHHHHccCCCCCCHHHHHHHHHHHhHHHHHHhcccccccccCC
Q 047171 1062 EP------TLFAGTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGE 1112 (1224)
Q Consensus 1062 dp------~LF~gTIreNl~~~~~~~~deei~~al~~a~l~~~I~~lp~gldt~vge 1112 (1224)
++ .+++.++.+||. .+++..++..+..+..+......+...+.+
T Consensus 95 ~~~~~~~~~l~~~~v~~~i~-------~~~v~~~~s~~~~~~~vr~~l~~~~~~~a~ 144 (252)
T 4e22_A 95 SQNGQLQVILEGEDVSNEIR-------TETVGNTASQAAAFPRVREALLRRQRAFRE 144 (252)
T ss_dssp EETTEEEEEETTEECTTGGG-------SHHHHHHHHHHTTSHHHHHHHHHHHHTTCC
T ss_pred cCCCCceEEECCeehhHHHH-------HHHHHHHHHHhcccHHHHHHHHHHHHHHhh
Confidence 54 466778888764 245666666666666665554444444443
No 265
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.91 E-value=1e-09 Score=114.32 Aligned_cols=46 Identities=15% Similarity=0.203 Sum_probs=39.0
Q ss_pred ccCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHc-CCCeEEEEeCCcch
Q 047171 469 IRDPKILLLDEATS-ALDAESERIVQEALDQAS-QGRTMIIIAHRLST 514 (1224)
Q Consensus 469 ~~~~~ililDE~ts-~lD~~~~~~i~~~l~~~~-~~~t~i~i~H~l~~ 514 (1224)
+.+|++|+||||++ ++|+.....+.+.+.... +|+++|++||....
T Consensus 98 ~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~~ 145 (180)
T 3ec2_A 98 VLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYSLQ 145 (180)
T ss_dssp HHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCCSC
T ss_pred hcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCChh
Confidence 45999999999996 899999888888887654 68999999998753
No 266
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.89 E-value=1.9e-09 Score=121.13 Aligned_cols=138 Identities=12% Similarity=0.120 Sum_probs=91.8
Q ss_pred eCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcceEEEecCCCCCcccHHHHHccCCCCCCH
Q 047171 1004 EAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIALVSQEPTLFAGTIRQNIVYGKEVATE 1083 (1224)
Q Consensus 1004 ~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qdp~LF~gTIreNl~~~~~~~~d 1083 (1224)
++|+.++++|++||||||++..|.+.+.+.+| +++.++.+|++ ..+..+++..
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G------------------~~V~lv~~D~~--r~~a~eqL~~------- 155 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKH------------------KKIAFITTDTY--RIAAVEQLKT------- 155 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTC------------------CCEEEEECCCS--STTHHHHHHH-------
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcC------------------CEEEEEecCcc--cchHHHHHHH-------
Confidence 46899999999999999999999999988778 24777888773 3333333321
Q ss_pred HHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc
Q 047171 1084 AEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMM 1163 (1224)
Q Consensus 1084 eei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~ 1163 (1224)
.++.. |++.... .+ ++..+.+++++ ++|+++|+| |+++|+..+..+.+..+-..
T Consensus 156 -----~~~~~-----------gl~~~~~-----~~-~~~l~~al~~~--~~~dlvIiD--T~G~~~~~~~~~~el~~~l~ 209 (296)
T 2px0_A 156 -----YAELL-----------QAPLEVC-----YT-KEEFQQAKELF--SEYDHVFVD--TAGRNFKDPQYIDELKETIP 209 (296)
T ss_dssp -----HHTTT-----------TCCCCBC-----SS-HHHHHHHHHHG--GGSSEEEEE--CCCCCTTSHHHHHHHHHHSC
T ss_pred -----HHHhc-----------CCCeEec-----CC-HHHHHHHHHHh--cCCCEEEEe--CCCCChhhHHHHHHHHHHHh
Confidence 11111 1111111 12 34457777764 999999999 99999877766665443322
Q ss_pred ---CCCeEEEE--ccCchhhhh-cCEEEEEeCCEEEE
Q 047171 1164 ---VGRTCVVV--AHRLSTIQK-ADNIVVIKNGKVVE 1194 (1224)
Q Consensus 1164 ---~~~TvI~I--aHrl~ti~~-aD~I~vl~~G~Ive 1194 (1224)
.+.+++++ +|....+.. +|++..++.|.++-
T Consensus 210 ~~~~~~~~lVl~at~~~~~~~~~~~~~~~l~~~giVl 246 (296)
T 2px0_A 210 FESSIQSFLVLSATAKYEDMKHIVKRFSSVPVNQYIF 246 (296)
T ss_dssp CCTTEEEEEEEETTBCHHHHHHHTTTTSSSCCCEEEE
T ss_pred hcCCCeEEEEEECCCCHHHHHHHHHHHhcCCCCEEEE
Confidence 23456666 899877765 77766666677764
No 267
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.88 E-value=8.2e-10 Score=130.79 Aligned_cols=65 Identities=15% Similarity=0.131 Sum_probs=55.9
Q ss_pred EEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCH
Q 047171 979 ELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNL 1049 (1224)
Q Consensus 979 ~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~ 1049 (1224)
.+.++++.. ..+|+|+||+|++ |++||+||||||||||+++|.|+++|++|+|.++|.++...+.
T Consensus 8 ~l~~l~~~~-----~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~ 72 (483)
T 3euj_A 8 KFRSLTLIN-----WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTEAGSTS 72 (483)
T ss_dssp EEEEEEEEE-----ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTSCSCCC
T ss_pred ceeEEEEec-----cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEcccCch
Confidence 455555432 2379999999999 9999999999999999999999999999999999999876543
No 268
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.86 E-value=2.4e-09 Score=120.46 Aligned_cols=98 Identities=19% Similarity=0.304 Sum_probs=72.5
Q ss_pred eeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcceEEEecCCCCCcccHHHHHccCC
Q 047171 999 LTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIALVSQEPTLFAGTIRQNIVYGK 1078 (1224)
Q Consensus 999 isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qdp~LF~gTIreNl~~~~ 1078 (1224)
++++.++|+.++|+|++||||||++..|.+.+.+..|+|.+.+.|+... ...
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~---------------------~a~------- 148 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRA---------------------AAI------- 148 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCH---------------------HHH-------
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccH---------------------HHH-------
Confidence 3555678999999999999999999999999999889999887765320 011
Q ss_pred CCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHH---HHHHHHccCCCEEEEeccCC
Q 047171 1079 EVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRI---ALARAVLKNPMILLLDEATS 1145 (1224)
Q Consensus 1079 ~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRl---aLARAll~~p~ILlLDEaTS 1145 (1224)
+++...++.. |++. + ...|||+.|++ +++||+.++|+++|+|||..
T Consensus 149 -----eqL~~~~~~~-----------gl~~-~----~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 149 -----EQLKIWGERV-----------GATV-I----SHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR 197 (306)
T ss_dssp -----HHHHHHHHHH-----------TCEE-E----CCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC
T ss_pred -----HHHHHHHHHc-----------CCcE-E----ecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence 1121111111 2221 1 14689999999 99999999999999999985
No 269
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=98.85 E-value=4.6e-11 Score=129.52 Aligned_cols=126 Identities=18% Similarity=0.186 Sum_probs=99.0
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcCC---CCCCcEEEE--------CCEecCC-CCHHHHhcccEEecCCC------CCCcc
Q 047171 344 PTIGLVGSSGSGKSTVISLLERFY---DPVKGNILL--------DGHKIKK-LQLKWLRSQMGLVNQEP------ILFST 405 (1224)
Q Consensus 344 ~~~~ivG~sGsGKSTl~~ll~~~~---~~~~G~i~~--------~g~~~~~-~~~~~~r~~i~~v~Q~~------~lf~~ 405 (1224)
.+++|+|++||||||++++|.+.+ .++.|.+.. +|.++.+ ....++++++++++|++ .++..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 85 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVSTNGNLEVILEGE 85 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEETTEEEEEETTE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeeccCCCceEEECCe
Confidence 479999999999999999999877 788899887 7877653 45667888999999976 44556
Q ss_pred cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhccccccccc-cCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCC
Q 047171 406 SIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKV-GQFGVQLSGGQKQRIAIARALIRDPKILLLDEAT 481 (1224)
Q Consensus 406 ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~-~~~g~~LSgGq~qriaiARal~~~~~ililDE~t 481 (1224)
++.+++. .+++..++..+..++++.....+..+.+ .++|.-++|+ .++++++.+++++|+.++.
T Consensus 86 ~v~~~~~-------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~vldg~-----~~~~~~~~~~d~~i~l~~~ 150 (227)
T 1cke_A 86 DVSGEIR-------TQEVANAASQVAAFPRVREALLRRQRAFRELPGLIADGR-----DMGTVVFPDAPVKIFLDAS 150 (227)
T ss_dssp ECHHHHT-------SHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCEEEEES-----SCCCCCCTTCSEEEEEECC
T ss_pred eCchhhC-------CHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEECC-----CccceEecCCCEEEEEeCC
Confidence 7878763 4677788888888888887766665554 3567778887 5677788999999998874
No 270
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=98.83 E-value=2.4e-10 Score=115.82 Aligned_cols=75 Identities=16% Similarity=0.112 Sum_probs=58.4
Q ss_pred EeEEEECCCCCCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcccEEecCCCCCCcccHHHH
Q 047171 331 KDVDFSYPTRPDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFSTSIKEN 410 (1224)
Q Consensus 331 ~~v~f~y~~~~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~n 410 (1224)
++|+|.. +++++++|+||||||||||+++|+|++ |++|+|.++|.++.+. ...+ .+++|++.+|.-|+.||
T Consensus 24 ~~vsl~i---~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i~~~--~~~~---~~~~q~~~l~~ltv~e~ 94 (158)
T 1htw_A 24 ILLKLHT---EKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTLVEE--YNIA---GKMIYHFDLYRLADPEE 94 (158)
T ss_dssp HHHHHCC---SSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTCEEE--EEET---TEEEEEEECTTCSCTTH
T ss_pred hcccccc---CCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEeeeee--ccCC---CcceeccccccCCcHHH
Confidence 3444443 356799999999999999999999999 9999999999887421 1111 28999998887799999
Q ss_pred Hh-cC
Q 047171 411 IL-IG 414 (1224)
Q Consensus 411 i~-~g 414 (1224)
+. +|
T Consensus 95 l~~~g 99 (158)
T 1htw_A 95 LEFMG 99 (158)
T ss_dssp HHHST
T ss_pred HHHcC
Confidence 84 44
No 271
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.82 E-value=1.6e-11 Score=136.94 Aligned_cols=130 Identities=15% Similarity=0.116 Sum_probs=90.9
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcccEEecCCC-CCCcc-cHHHHHhcCCCCCCHHHH
Q 047171 346 IGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEP-ILFST-SIKENILIGKPGASMETV 423 (1224)
Q Consensus 346 ~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~-~lf~~-ti~~ni~~g~~~~~~~~~ 423 (1224)
++|+||+|||||||+++|+|.+.+ |.|.++|.++........++.+++++|++ ..++. ++.|||....+.....+.
T Consensus 47 vlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~ 124 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANESGL--NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRET 124 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHHTTC--EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC-------
T ss_pred EEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcc
Confidence 899999999999999999999887 79999999887665556677899999986 34433 677777654321111100
Q ss_pred HHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCC------------CCCHHHHHH
Q 047171 424 VKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATS------------ALDAESERI 491 (1224)
Q Consensus 424 ~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~ililDE~ts------------~lD~~~~~~ 491 (1224)
+ .....+.+....|||||+||+.|++|+..+|++| |||+. .-|.+.+..
T Consensus 125 -------~----------~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~r~gRfd~~i~~~~P~~~~r~~ 185 (274)
T 2x8a_A 125 -------G----------ASVRVVNQLLTEMDGLEARQQVFIMAATNRPDII--DPAILRPGRLDKTLFVGLPPPADRLA 185 (274)
T ss_dssp -------------------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGS--CHHHHSTTSSCEEEECCSCCHHHHHH
T ss_pred -------h----------HHHHHHHHHHHhhhcccccCCEEEEeecCChhhC--CHhhcCcccCCeEEEeCCcCHHHHHH
Confidence 0 0011122223468999999999999999999985 99874 236666666
Q ss_pred HHHHH
Q 047171 492 VQEAL 496 (1224)
Q Consensus 492 i~~~l 496 (1224)
|.+.+
T Consensus 186 il~~~ 190 (274)
T 2x8a_A 186 ILKTI 190 (274)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65544
No 272
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.82 E-value=1.1e-09 Score=123.75 Aligned_cols=98 Identities=13% Similarity=0.092 Sum_probs=63.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEE---CCEecCCCCHHHHhcccEEecCCCC----------------CC
Q 047171 343 TPTIGLVGSSGSGKSTVISLLERFYDPVKGNILL---DGHKIKKLQLKWLRSQMGLVNQEPI----------------LF 403 (1224)
Q Consensus 343 ~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~---~g~~~~~~~~~~~r~~i~~v~Q~~~----------------lf 403 (1224)
+++++|+||||||||||+++|.|+.+|++|+|.+ +|+++.........+.+|+|+|+|. +|
T Consensus 169 geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~~~~~l~ 248 (301)
T 1u0l_A 169 GKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEELKHYF 248 (301)
T ss_dssp SSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHHHHGGGS
T ss_pred CCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHHHHHHHH
Confidence 5689999999999999999999999999999999 9998876542111236999999985 45
Q ss_pred cc-cHHHHHhcCCC---CCCHHHHHHHHHHhcH-HHHHHhccc
Q 047171 404 ST-SIKENILIGKP---GASMETVVKAAQAANV-HDFIMKLND 441 (1224)
Q Consensus 404 ~~-ti~~ni~~g~~---~~~~~~~~~~~~~~~~-~~~i~~l~~ 441 (1224)
+. |+ +|+.|+.. ......+.++++..++ .+...+.|.
T Consensus 249 ~~~~~-~n~~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~ 290 (301)
T 1u0l_A 249 KEFGD-KQCFFSDCNHVDEPECGVKEAVENGEIAESRYENYVK 290 (301)
T ss_dssp TTSSS-CCCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHHHH
T ss_pred Hhccc-ccCcCCCCcCCCCCCcHHHHHHHcCCCCHHHHHHHHH
Confidence 54 88 99988532 1223457777777776 355555543
No 273
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.81 E-value=1.9e-09 Score=114.63 Aligned_cols=153 Identities=10% Similarity=0.086 Sum_probs=92.7
Q ss_pred eEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcceEEEecCCCCCcc-cHHHHHccCC
Q 047171 1000 TLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIALVSQEPTLFAG-TIRQNIVYGK 1078 (1224)
Q Consensus 1000 sl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qdp~LF~g-TIreNl~~~~ 1078 (1224)
|+++++|+.++|+||||||||||+++|.|+++ .+.++|.++...+....+..++|++|++.+|.. +..+|+....
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA----EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFLEHA 76 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS----SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEEEEE
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC----CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcEEeee
Confidence 57889999999999999999999999999974 688898888776666668889999999987754 4445443211
Q ss_pred C------CCCHHHHHHHHHHH----------hHHHHHHhcccc------------cccccCCCCCCCChHHHHHHHHHHH
Q 047171 1079 E------VATEAEIRKAAVLA----------NAHEFISSTEDG------------YDTYCGERGVQLSGGQKQRIALARA 1130 (1224)
Q Consensus 1079 ~------~~~deei~~al~~a----------~l~~~I~~lp~g------------ldt~vge~G~~LSGGQrQRlaLARA 1130 (1224)
. ....+++.++++.. ++.......|.. +...+.+++..-....++|+.-++.
T Consensus 77 ~~~~~~~~~~~~~i~~~l~~g~~vi~d~~~~~~~~~~~~~~~~~~v~~~~~~~e~l~~Rl~~R~~~~~~~i~~rl~~~~~ 156 (205)
T 3tr0_A 77 TIYERHYGTEKDWVLRQLKAGRDVLLEIDWQGARQIRELFPPALSIFILPPSIEALRERLIKRRQDDTAIIEQRLALARE 156 (205)
T ss_dssp EETTEEEEEEHHHHHHHHHTTCEEEEECCHHHHHHHHHHCTTCEEEEEECSCHHHHHHHHHTCTTSCSSTHHHHHHHHHH
T ss_pred eeecccccchHHHHHHHHHcCCeEEEEECHHHHHHHHHhCCCcEEEEEECcCHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 0 11223444443321 222222222322 1112234454444567788888877
Q ss_pred Hc---cCCCEEEEeccCCCCCHH-HHHHHHHHHHH
Q 047171 1131 VL---KNPMILLLDEATSALDSA-SENLVQEALEK 1161 (1224)
Q Consensus 1131 ll---~~p~ILlLDEaTSaLD~~-te~~I~~~l~~ 1161 (1224)
.. +.++.+|.++ |.+ +.+.+.+.+..
T Consensus 157 ~~~~~~~~d~vi~n~-----~~~~~~~~l~~~i~~ 186 (205)
T 3tr0_A 157 EMAHYKEFDYLVVND-----NFDQAVQNLIHIISA 186 (205)
T ss_dssp HHTTGGGCSEEEECS-----SHHHHHHHHHHHHHH
T ss_pred HHhcccCCCEEEECC-----CHHHHHHHHHHHHHH
Confidence 65 3467777644 332 44555555543
No 274
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.79 E-value=4.6e-10 Score=125.92 Aligned_cols=94 Identities=15% Similarity=0.197 Sum_probs=55.1
Q ss_pred EEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEE---CCccCCCCCHHHHhcceEEEecCCCCCc-----ccHHHH
Q 047171 1002 KIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMV---DERNIKSYNLRKLRSCIALVSQEPTLFA-----GTIRQN 1073 (1224)
Q Consensus 1002 ~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~i---dG~di~~~~~~~lR~~i~~V~Qdp~LF~-----gTIreN 1073 (1224)
++.+|++++|+|+||+|||||+++|.|+..|..|+|.+ +|.+++... ..++..+++|+|.|-++. .|+ ||
T Consensus 169 ~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~-~~~~~~~g~v~dtpg~~~~~l~~lt~-e~ 246 (307)
T 1t9h_A 169 PHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHV-ELIHTSGGLVADTPGFSSLEFTDIEE-EE 246 (307)
T ss_dssp GGGTTSEEEEEESHHHHHHHHHHHHCC-------------------CCCC-CEEEETTEEEESSCSCSSCCCTTCCH-HH
T ss_pred hhcCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHH-HHhhcCCEEEecCCCccccccccCCH-HH
Confidence 45689999999999999999999999999999999999 888876532 222333899999997654 578 99
Q ss_pred Hc--cC-----------C----CCCCHHHHHHHHHHHhHHH
Q 047171 1074 IV--YG-----------K----EVATEAEIRKAAVLANAHE 1097 (1224)
Q Consensus 1074 l~--~~-----------~----~~~~deei~~al~~a~l~~ 1097 (1224)
|. |. . .......+.++++..++.+
T Consensus 247 l~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~ 287 (307)
T 1t9h_A 247 LGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQ 287 (307)
T ss_dssp HGGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCH
T ss_pred HHHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChH
Confidence 83 21 0 0112345777777776644
No 275
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.75 E-value=3.4e-11 Score=139.58 Aligned_cols=169 Identities=16% Similarity=0.181 Sum_probs=108.1
Q ss_pred EEeCCcEEEEEcCCCCChHHHHHHHhc------------ccCCCCceEEECCccCCCCC-HHHHhcce---EEEecCCCC
Q 047171 1002 KIEAGKTVALVGQSGSGKSTIIGLIER------------FYDPQSGSVMVDERNIKSYN-LRKLRSCI---ALVSQEPTL 1065 (1224)
Q Consensus 1002 ~I~~Ge~vaIVG~SGsGKSTL~~lL~r------------l~~p~~G~I~idG~di~~~~-~~~lR~~i---~~V~Qdp~L 1065 (1224)
++++|+++||||++|+|||||+++|.| ..+|+.|.+.++|..+..+. ...-++.+ ..+.+-|-+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 557899999999999999999999999 67899999999885332110 00001222 356666665
Q ss_pred Ccc-cHHHHHccCCCCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHccCC--CEEEEec
Q 047171 1066 FAG-TIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNP--MILLLDE 1142 (1224)
Q Consensus 1066 F~g-TIreNl~~~~~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll~~p--~ILlLDE 1142 (1224)
..+ |..+++ . .+....++.+.. +... +|..-......+||+. +| +|+++||
T Consensus 96 ~~~~s~~e~L-------~-~~fl~~ir~~d~---il~V---vd~~~d~~i~~v~~~~------------dP~~di~ilde 149 (392)
T 1ni3_A 96 TKGASTGVGL-------G-NAFLSHVRAVDA---IYQV---VRAFDDAEIIHVEGDV------------DPIRDLSIIVD 149 (392)
T ss_dssp CCCCCSSSSS-------C-HHHHHHHTTCSE---EEEE---EECCCTTCSSCCSSSS------------CHHHHHHHHHH
T ss_pred ccCCcHHHHH-------H-HHHHHHHHHHHH---HHHH---Hhccccceeeeecccc------------Ccchhhhhchh
Confidence 532 222222 0 111111111110 0000 0000012223356552 89 9999999
Q ss_pred cCCCCCHHHHHHHHHHHHHh-cC-CCeEEEEccCchhhhh-cCEEE-EEeCC-EEEEecCh
Q 047171 1143 ATSALDSASENLVQEALEKM-MV-GRTCVVVAHRLSTIQK-ADNIV-VIKNG-KVVEQGTQ 1198 (1224)
Q Consensus 1143 aTSaLD~~te~~I~~~l~~~-~~-~~TvI~IaHrl~ti~~-aD~I~-vl~~G-~Ive~Gt~ 1198 (1224)
|++.+|++..+..++.+++. .+ |+|+ ++|.+..+.. ||+|. +|++| +++..|+.
T Consensus 150 el~~~D~~~~~k~~~~l~~~~~~~g~ti--~sh~~~~~~~l~~~i~~~L~~G~~~~~~~~~ 208 (392)
T 1ni3_A 150 ELLIKDAEFVEKHLEGLRKITSRGANTL--EMKAKKEEQAIIEKVYQYLTETKQPIRKGDW 208 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCSSCSS--SHHHHHHHHHHHHHHHHHHHTTCSCGGGSCC
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhcCCcc--ccccHHHHHHHHHHHHHHhccCCceeecCCC
Confidence 99999999998888888876 54 4554 3999998866 99999 99999 88876754
No 276
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.73 E-value=8.6e-10 Score=115.56 Aligned_cols=127 Identities=18% Similarity=0.348 Sum_probs=62.2
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcccC-------------CCCceEEECCccCCCCCHHHHhcceEEEecCCCCCcccHHH
Q 047171 1006 GKTVALVGQSGSGKSTIIGLIERFYD-------------PQSGSVMVDERNIKSYNLRKLRSCIALVSQEPTLFAGTIRQ 1072 (1224)
Q Consensus 1006 Ge~vaIVG~SGsGKSTL~~lL~rl~~-------------p~~G~I~idG~di~~~~~~~lR~~i~~V~Qdp~LF~gTIre 1072 (1224)
|+.++|+||||||||||+++|.|+++ |..|++ +|.+....+.+.+++.+ .|+..++..++..
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~ge~--~g~~~~~~~~~~~~~~~---~~~~~~e~~~~~~ 75 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEV--NGKDYNFVSVDEFKSMI---KNNEFIEWAQFSG 75 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCGGGEECCCEEECSCCCTTCC--BTTTBEECCHHHHHHHH---HTTCEEEEEEETT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCccceEEeeccccCCCCCcc--CCeeeeecCHHHHHHHH---hhcceeeEEEEec
Confidence 67899999999999999999999998 788886 88888777777666543 2555555555555
Q ss_pred HHccCCCCCCHHHHHHHHHH----------HhHHHHHHh--------------cccccccccCCCCCCCChHHHHHHHHH
Q 047171 1073 NIVYGKEVATEAEIRKAAVL----------ANAHEFISS--------------TEDGYDTYCGERGVQLSGGQKQRIALA 1128 (1224)
Q Consensus 1073 Nl~~~~~~~~deei~~al~~----------a~l~~~I~~--------------lp~gldt~vge~G~~LSGGQrQRlaLA 1128 (1224)
|+ ++.+ .+++.++++. .++.. +.. -++.+...+.++|..-....+||++-|
T Consensus 76 ~~-yg~~---~~~i~~~l~~g~~~il~~~~~g~~~-l~~~~~~~~~~i~i~~p~~~~l~~Rl~~Rg~~~~~~i~~rl~~~ 150 (186)
T 3a00_A 76 NY-YGST---VASVKQVSKSGKTCILDIDMQGVKS-VKAIPELNARFLFIAPPSVEDLKKRLEGRGTETEESINKRLSAA 150 (186)
T ss_dssp EE-EEEE---HHHHHHHHHTTCEEEEECCHHHHHH-HHTCGGGCCEEEEEECSCC-------------------------
T ss_pred ee-ccCc---HHHHHHHHHcCCeEEEEEcHHHHHH-HHHhcCCCeEEEEEECcCHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 54 4422 2333333332 11111 111 113455556667777667788899988
Q ss_pred HHHc-----cCCCEEEEec
Q 047171 1129 RAVL-----KNPMILLLDE 1142 (1224)
Q Consensus 1129 RAll-----~~p~ILlLDE 1142 (1224)
+.-+ +.++.+|..+
T Consensus 151 ~~~~~~~~~~~~d~vi~nd 169 (186)
T 3a00_A 151 QAELAYAETGAHDKVIVND 169 (186)
T ss_dssp --------CCCCSEEEECS
T ss_pred HHHHHhhcccCCcEEEECc
Confidence 8766 4567766654
No 277
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.72 E-value=9.1e-09 Score=115.56 Aligned_cols=137 Identities=14% Similarity=0.193 Sum_probs=89.3
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcccEEecCCCCCCcccHHHHHhcCCCCCCHH
Q 047171 342 DTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFSTSIKENILIGKPGASME 421 (1224)
Q Consensus 342 ~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~g~~~~~~~ 421 (1224)
++.+++++|++||||||++..|++.+.+++| +++.++.+|++ ..+..|++..
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G------------------~~V~lv~~D~~--r~~a~eqL~~-------- 155 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKH------------------KKIAFITTDTY--RIAAVEQLKT-------- 155 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTC------------------CCEEEEECCCS--STTHHHHHHH--------
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcC------------------CEEEEEecCcc--cchHHHHHHH--------
Confidence 3569999999999999999999999998778 14677777773 3233333221
Q ss_pred HHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-
Q 047171 422 TVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQAS- 500 (1224)
Q Consensus 422 ~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~- 500 (1224)
.++ .+ |.+-... ..++..+.+|+++ .+|+++|+| |+++|+.....+.+..+-..
T Consensus 156 ----~~~---------~~--gl~~~~~------~~~~~l~~al~~~--~~~dlvIiD--T~G~~~~~~~~~~el~~~l~~ 210 (296)
T 2px0_A 156 ----YAE---------LL--QAPLEVC------YTKEEFQQAKELF--SEYDHVFVD--TAGRNFKDPQYIDELKETIPF 210 (296)
T ss_dssp ----HHT---------TT--TCCCCBC------SSHHHHHHHHHHG--GGSSEEEEE--CCCCCTTSHHHHHHHHHHSCC
T ss_pred ----HHH---------hc--CCCeEec------CCHHHHHHHHHHh--cCCCEEEEe--CCCCChhhHHHHHHHHHHHhh
Confidence 111 01 1111111 1234567788875 999999999 99999876665555443332
Q ss_pred --CCCeEEEE--eCCcchhhc-cCEEEEEeCceEEe
Q 047171 501 --QGRTMIII--AHRLSTIRK-ADLIGVLQSGRVIE 531 (1224)
Q Consensus 501 --~~~t~i~i--~H~l~~~~~-ad~i~vl~~G~i~~ 531 (1224)
...+++++ +|..+.+.. +|++..++.|.++-
T Consensus 211 ~~~~~~~lVl~at~~~~~~~~~~~~~~~l~~~giVl 246 (296)
T 2px0_A 211 ESSIQSFLVLSATAKYEDMKHIVKRFSSVPVNQYIF 246 (296)
T ss_dssp CTTEEEEEEEETTBCHHHHHHHTTTTSSSCCCEEEE
T ss_pred cCCCeEEEEEECCCCHHHHHHHHHHHhcCCCCEEEE
Confidence 23345565 898777765 77766666677765
No 278
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.69 E-value=6.5e-11 Score=136.25 Aligned_cols=145 Identities=19% Similarity=0.196 Sum_probs=94.7
Q ss_pred ccceeceeEEEeCC-------cEEEEEcCCCCChHHHHHHHhccc----CCCCceEEECCccCCCCCHHHHhcceEEEec
Q 047171 993 QMIFKGLTLKIEAG-------KTVALVGQSGSGKSTIIGLIERFY----DPQSGSVMVDERNIKSYNLRKLRSCIALVSQ 1061 (1224)
Q Consensus 993 ~~vL~~isl~I~~G-------e~vaIVG~SGsGKSTL~~lL~rl~----~p~~G~I~idG~di~~~~~~~lR~~i~~V~Q 1061 (1224)
..+++++++.+++| +.++|+||+|+|||||++++.+.. .+.+|.+..+|.++..+.....+..|.+|+|
T Consensus 31 ~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~~~~~~v~~iDE 110 (334)
T 1in4_A 31 ENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDE 110 (334)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHHCCTTCEEEEET
T ss_pred HHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHHccCCCEEEEcc
Confidence 35899999999887 889999999999999999999998 6778888887776643211112567999999
Q ss_pred CCCCCcccHHHHHccCCCCC--C----HHHHHHHHHHHhHHHHHHhcc-cccccccCCCCCCCChHHHHHHHHHHHHccC
Q 047171 1062 EPTLFAGTIRQNIVYGKEVA--T----EAEIRKAAVLANAHEFISSTE-DGYDTYCGERGVQLSGGQKQRIALARAVLKN 1134 (1224)
Q Consensus 1062 dp~LF~gTIreNl~~~~~~~--~----deei~~al~~a~l~~~I~~lp-~gldt~vge~G~~LSGGQrQRlaLARAll~~ 1134 (1224)
.+.++. ++.|++....... + .++-. +. +.. .+| -++.. .......||+|+|||++++
T Consensus 111 ~~~l~~-~~~e~L~~~~~~~~~~i~~~~~~~~---~~--i~~---~l~~~~li~-at~~~~~Ls~~l~sR~~l~------ 174 (334)
T 1in4_A 111 IHRLNK-AVEELLYSAIEDFQIDIMIGKGPSA---KS--IRI---DIQPFTLVG-ATTRSGLLSSPLRSRFGII------ 174 (334)
T ss_dssp GGGCCH-HHHHHHHHHHHTSCCCC-----------------------CCCEEEE-EESCGGGSCHHHHTTCSEE------
T ss_pred hhhcCH-HHHHHHHHHHHhcccceeeccCccc---cc--ccc---cCCCeEEEE-ecCCcccCCHHHHHhcCce------
Confidence 988775 8888874221110 0 00000 00 011 111 12211 1223347999999998665
Q ss_pred CCEEEEeccCCCCCHHHHHHHHHHHHHhc
Q 047171 1135 PMILLLDEATSALDSASENLVQEALEKMM 1163 (1224)
Q Consensus 1135 p~ILlLDEaTSaLD~~te~~I~~~l~~~~ 1163 (1224)
.+||+.+.+.+.+.|++..
T Consensus 175 ----------~~Ld~~~~~~l~~iL~~~~ 193 (334)
T 1in4_A 175 ----------LELDFYTVKELKEIIKRAA 193 (334)
T ss_dssp ----------EECCCCCHHHHHHHHHHHH
T ss_pred ----------eeCCCCCHHHHHHHHHHHH
Confidence 6777777777777776553
No 279
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.68 E-value=3.7e-11 Score=130.70 Aligned_cols=124 Identities=20% Similarity=0.225 Sum_probs=50.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHh-cCC------------CCCCcEEEECCEecCCCCHHHHhcccEEecCCCCCCcc-cH
Q 047171 342 DTPTIGLVGSSGSGKSTVISLLE-RFY------------DPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFST-SI 407 (1224)
Q Consensus 342 ~~~~~~ivG~sGsGKSTl~~ll~-~~~------------~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~-ti 407 (1224)
++++++|+||||||||||+++|+ |++ +|..|++ +| ++|++|++..|.. +.
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~~~~~~~~~~~~~~~g~~--~g--------------~~~~~~~~~~~~~~~~ 89 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVANKLLEKQKNNIVKSVSVTTRAARKGEK--EG--------------KDYYFVDREEFLRLCS 89 (231)
T ss_dssp CCCEEEEECSCC----CHHHHHHC----CEEECCCEESSCCCTTCC--BT--------------TTBEECCHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcCCCCcccccccCCCCCCcccc--CC--------------CeEEEecHHHhhhhhh
Confidence 46799999999999999999999 998 4444433 33 4455555443332 22
Q ss_pred HHHHh---------cCCCCCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCCh--HHHHHH-HHHH-HhccCCCE
Q 047171 408 KENIL---------IGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSG--GQKQRI-AIAR-ALIRDPKI 474 (1224)
Q Consensus 408 ~~ni~---------~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSg--Gq~qri-aiAR-al~~~~~i 474 (1224)
.+|+. +|.+.. ++.+..+. |....+. ..+.| .-+++. .-++ .++..|+.
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~---~i~~~~~~------------~~~vild---~~~~g~~~~~~~~~~~~~~v~v~~~~~ 151 (231)
T 3lnc_A 90 NGEIIEHAEVFGNFYGVPRK---NLEDNVDK------------GVSTLLV---IDWQGAFKFMEMMREHVVSIFIMPPSM 151 (231)
T ss_dssp TTCEEEEEEETTEEEEEECT---THHHHHHH------------TCEEEEE---CCHHHHHHHHHHSGGGEEEEEEECSCH
T ss_pred cCceehhhhhccccCCCCHH---HHHHHHHc------------CCeEEEE---cCHHHHHHHHHhcCCCeEEEEEECCcH
Confidence 22222 332222 22222211 1111111 00111 113333 2222 34567888
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHH
Q 047171 475 LLLDEATSALDAESERIVQEALDQA 499 (1224)
Q Consensus 475 lilDE~ts~lD~~~~~~i~~~l~~~ 499 (1224)
.++||++++.|..++..+++.+...
T Consensus 152 ~~l~~Rl~~R~~~~~~~i~~rl~~~ 176 (231)
T 3lnc_A 152 EELRRRLCGRRADDSEVVEARLKGA 176 (231)
T ss_dssp HHHHHC--------------CHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 8899999999988888777777543
No 280
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.68 E-value=5.9e-11 Score=133.00 Aligned_cols=138 Identities=18% Similarity=0.206 Sum_probs=97.7
Q ss_pred EEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcceEE
Q 047171 979 ELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIAL 1058 (1224)
Q Consensus 979 ~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~~ 1058 (1224)
+++++...|. ...+++++++++++| ++|+||+|||||||+++|.+... .|.|.++|.++.+......++++++
T Consensus 51 ~l~~l~~~~~---~~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~ 123 (278)
T 1iy2_A 51 ELKEIVEFLK---NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRD 123 (278)
T ss_dssp HHHHHHHHHH---CHHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSTTTHHHHHHHH
T ss_pred HHHHHHHHHH---CHHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC--CCEEEecHHHHHHHHhhHHHHHHHH
Confidence 4456666663 235899999999999 99999999999999999999885 7999999988765555566777888
Q ss_pred EecCCC-CC-cccHHHHHc-cCCCCC-----CHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHH
Q 047171 1059 VSQEPT-LF-AGTIRQNIV-YGKEVA-----TEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARA 1130 (1224)
Q Consensus 1059 V~Qdp~-LF-~gTIreNl~-~~~~~~-----~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARA 1130 (1224)
++|++. .+ .-++.||++ ++.... ..++..+. +..++ ..|||||+||..+++|
T Consensus 124 ~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~-----~~~ll---------------~~lsgg~~~~~~i~~a 183 (278)
T 1iy2_A 124 LFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQT-----LNQLL---------------VEMDGFEKDTAIVVMA 183 (278)
T ss_dssp HHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHH-----HHHHH---------------HHHTTCCTTCCEEEEE
T ss_pred HHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHH-----HHHHH---------------HHHhCCCCCCCEEEEE
Confidence 888864 33 346677774 221110 01111111 11111 1378999999999999
Q ss_pred HccCCCEEEEeccCC
Q 047171 1131 VLKNPMILLLDEATS 1145 (1224)
Q Consensus 1131 ll~~p~ILlLDEaTS 1145 (1224)
+..+|++ ||++..
T Consensus 184 ~t~~p~~--ld~~l~ 196 (278)
T 1iy2_A 184 ATNRPDI--LDPALL 196 (278)
T ss_dssp EESCTTS--SCHHHH
T ss_pred ecCCchh--CCHhHc
Confidence 9999987 787753
No 281
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=98.67 E-value=6.9e-09 Score=113.62 Aligned_cols=167 Identities=16% Similarity=0.187 Sum_probs=89.8
Q ss_pred cceece-eEEEeCCcEEEEEcCCCCChHHHHH-HHhcccCCCCceEEECCccCCCCCHHHHh---cceEEEecCCCCCcc
Q 047171 994 MIFKGL-TLKIEAGKTVALVGQSGSGKSTIIG-LIERFYDPQSGSVMVDERNIKSYNLRKLR---SCIALVSQEPTLFAG 1068 (1224)
Q Consensus 994 ~vL~~i-sl~I~~Ge~vaIVG~SGsGKSTL~~-lL~rl~~p~~G~I~idG~di~~~~~~~lR---~~i~~V~Qdp~LF~g 1068 (1224)
+.|+++ .--+++|+.++|+||+||||||++. ++....+...+.+++++.. +...++ +++++.+|+...
T Consensus 10 ~~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~----~~~~~~~~~~~~g~~~~~~~~--- 82 (247)
T 2dr3_A 10 PGVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEE----HPVQVRQNMAQFGWDVKPYEE--- 82 (247)
T ss_dssp TTHHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSS----CHHHHHHHHHTTTCCCHHHHH---
T ss_pred hhHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccC----CHHHHHHHHHHcCCCHHHHhh---
Confidence 356666 6679999999999999999999954 5555555444555565532 223322 334555443210
Q ss_pred cHHHHHccCCCCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHc--cCCCEEEEeccCCC
Q 047171 1069 TIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVL--KNPMILLLDEATSA 1146 (1224)
Q Consensus 1069 TIreNl~~~~~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll--~~p~ILlLDEaTSa 1146 (1224)
.+|+...... . +.+ ...+. .+..+-+. +....+.+..++.++ .+|+++++|++|+-
T Consensus 83 --~~~l~~~~~~-~-~~~-------------~~~~~-~~~~~~~~----~~~~~~~~~~i~~~~~~~~~~~vviD~~~~l 140 (247)
T 2dr3_A 83 --KGMFAMVDAF-T-AGI-------------GKSKE-YEKYIVHD----LTDIREFIEVLRQAIRDINAKRVVVDSVTTL 140 (247)
T ss_dssp --HTSEEEEECS-T-TTT-------------CC--C-CCSCBCSC----CSSHHHHHHHHHHHHHHHTCCEEEEETSGGG
T ss_pred --CCcEEEEecc-h-hhc-------------ccccc-cccccccC----ccCHHHHHHHHHHHHHHhCCCEEEECCchHh
Confidence 0122111000 0 000 00000 00011111 112334444445444 47999999999998
Q ss_pred C--CHHHHHHHHHHHHHhc--CCCeEEEEccCchh--------h-hhcCEEEEEeC
Q 047171 1147 L--DSASENLVQEALEKMM--VGRTCVVVAHRLST--------I-QKADNIVVIKN 1189 (1224)
Q Consensus 1147 L--D~~te~~I~~~l~~~~--~~~TvI~IaHrl~t--------i-~~aD~I~vl~~ 1189 (1224)
+ |+...+.....+.+.. .++|+|+++|.... + ..||.|+.|+.
T Consensus 141 ~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 141 YINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp TTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred hcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 7 5433333333333332 48899999997764 3 45999999963
No 282
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=98.66 E-value=9.9e-10 Score=131.06 Aligned_cols=158 Identities=18% Similarity=0.216 Sum_probs=93.3
Q ss_pred ceeEEEeCCcEEEEEcCCCCChHHHHHHHhc--ccCCCCceEEECCccCCCCCHHHHhcceEEEecCCCCCcc---c---
Q 047171 998 GLTLKIEAGKTVALVGQSGSGKSTIIGLIER--FYDPQSGSVMVDERNIKSYNLRKLRSCIALVSQEPTLFAG---T--- 1069 (1224)
Q Consensus 998 ~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~r--l~~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qdp~LF~g---T--- 1069 (1224)
.+++++.+|..+.|+|.|||||||+++.|.. ++.++.|++.+.+.|.+...+..+.. -|+++.. .
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~~el~~~~~-------lPhl~~~Vvtd~~~ 231 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSVYEG-------IPHLLTEVVTDMKD 231 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSSSGGGGGTT-------CTTBSSSCBCSHHH
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCchhhhhhhcc-------CCcccceeecCHHH
Confidence 4678889999999999999999999999876 67777788888888877654444321 1333210 0
Q ss_pred HHHHHccCCCCCCHHHHH---HHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHH----------HHHHHHccCCC
Q 047171 1070 IRQNIVYGKEVATEAEIR---KAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRI----------ALARAVLKNPM 1136 (1224)
Q Consensus 1070 IreNl~~~~~~~~deei~---~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRl----------aLARAll~~p~ 1136 (1224)
..+.+... .+|+. +.++..++.++ .+|+..+. ..+||||+|+. ++|+++-..|.
T Consensus 232 a~~~L~~~-----~~EmerR~~ll~~~Gv~~i-----~~yn~~~~---~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ 298 (512)
T 2ius_A 232 AANALRWC-----VNEMERRYKLMSALGVRNL-----AGYNEKIA---EADRMMRPIPDPYWKPGDSMDAQHPVLKKEPY 298 (512)
T ss_dssp HHHHHHHH-----HHHHHHHHHHHHHTTCSSH-----HHHHHHHH---HHHHTTCCCBCTTC---------CCBCCCCCE
T ss_pred HHHHHHHH-----HHHHHHHHHHHHHcCCccH-----HHHHHHHH---HHhhcCCcccccccccccchhccccccccCCc
Confidence 11111100 01111 11111111110 01221111 13678887753 46777788898
Q ss_pred -EEEEeccCCCCCHHHHHHHHHHHHHh----c-CCCeEEEEccCch
Q 047171 1137 -ILLLDEATSALDSASENLVQEALEKM----M-VGRTCVVVAHRLS 1176 (1224)
Q Consensus 1137 -ILlLDEaTSaLD~~te~~I~~~l~~~----~-~~~TvI~IaHrl~ 1176 (1224)
++++||+++-+|... ..+.+.+.++ . .|.++|++|||++
T Consensus 299 ivlvIDE~~~ll~~~~-~~~~~~l~~Lar~gRa~GI~LIlaTQrp~ 343 (512)
T 2ius_A 299 IVVLVDEFADLMMTVG-KKVEELIARLAQKARAAGIHLVLATQRPS 343 (512)
T ss_dssp EEEEEETHHHHHHHHH-HHHHHHHHHHHHHCGGGTEEEEEEESCCC
T ss_pred EEEEEeCHHHHHhhhh-HHHHHHHHHHHHHhhhCCcEEEEEecCCc
Confidence 788999999988432 2333433322 2 2779999999988
No 283
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.66 E-value=8.3e-10 Score=129.27 Aligned_cols=154 Identities=18% Similarity=0.241 Sum_probs=89.6
Q ss_pred EEeEEEECCCCCCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcccEEecCCCCCCcccHHH
Q 047171 330 FKDVDFSYPTRPDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFSTSIKE 409 (1224)
Q Consensus 330 ~~~v~f~y~~~~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ 409 (1224)
-+++++... .+..++|||+||||||||++.|++..+ .+.+.+...+ ...+++|.|+.. ..-++.|
T Consensus 147 ~~~i~lelk---~g~~VgLVG~~gAGKSTLL~~Lsg~~~------~i~~~~ftTl-----~p~~G~V~~~~~-~~~~l~D 211 (416)
T 1udx_A 147 KRRLRLELM---LIADVGLVGYPNAGKSSLLAAMTRAHP------KIAPYPFTTL-----SPNLGVVEVSEE-ERFTLAD 211 (416)
T ss_dssp EEEEEEEEC---CSCSEEEECCGGGCHHHHHHHHCSSCC------EECCCTTCSS-----CCEEEEEECSSS-CEEEEEE
T ss_pred EeeeeeEEc---CCCEEEEECCCCCcHHHHHHHHHcCCc------cccCccccee-----cceeeEEEecCc-ceEEEEe
Confidence 467777764 356899999999999999999999843 3444444333 235777777641 1112222
Q ss_pred HHhcCCC-----CCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCC
Q 047171 410 NILIGKP-----GASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSAL 484 (1224)
Q Consensus 410 ni~~g~~-----~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~ililDE~ts~l 484 (1224)
+..+... ..... ..+..+ .++..+..+ |-. .+...+||+||+||+++||+|..+|.|+++ +.+
T Consensus 212 tpGli~~a~~~~~L~~~-fl~~~e--ra~~lL~vv----Dls-~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKl 279 (416)
T 1udx_A 212 IPGIIEGASEGKGLGLE-FLRHIA--RTRVLLYVL----DAA-DEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKV 279 (416)
T ss_dssp CCCCCCCGGGSCCSCHH-HHHHHT--SSSEEEEEE----ETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECC
T ss_pred ccccccchhhhhhhhHH-HHHHHH--HHHhhhEEe----CCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECC
Confidence 2221100 01111 111110 111111111 111 233457999999999999999999999999 899
Q ss_pred CHHHHHHHHHHHHHHc-CCCeEEEEeC
Q 047171 485 DAESERIVQEALDQAS-QGRTMIIIAH 510 (1224)
Q Consensus 485 D~~~~~~i~~~l~~~~-~~~t~i~i~H 510 (1224)
|......+.+..+.+. .+.+++.||.
T Consensus 280 Dl~~~~~~~~l~~~l~~~g~~vi~iSA 306 (416)
T 1udx_A 280 DLLEEEAVKALADALAREGLAVLPVSA 306 (416)
T ss_dssp TTSCHHHHHHHHHHHHTTTSCEEECCT
T ss_pred ChhhHHHHHHHHHHHHhcCCeEEEEEC
Confidence 9865533333333332 3667777764
No 284
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.65 E-value=5.9e-08 Score=111.49 Aligned_cols=143 Identities=17% Similarity=0.314 Sum_probs=84.6
Q ss_pred EEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCce-EEECCccCCCCCHHHHhcceEEEecCCCCCcccHHHHHccCCCC
Q 047171 1002 KIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGS-VMVDERNIKSYNLRKLRSCIALVSQEPTLFAGTIRQNIVYGKEV 1080 (1224)
Q Consensus 1002 ~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~-I~idG~di~~~~~~~lR~~i~~V~Qdp~LF~gTIreNl~~~~~~ 1080 (1224)
-+++|+.+.|.||+|||||||+..+........|. ++++... ..+. .+.+++++-+|+. .+.
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~--~~~~-~~a~~lG~~~~~l-----------~i~--- 119 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEH--ALDP-EYAKKLGVDTDSL-----------LVS--- 119 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC--CCCH-HHHHHTTCCGGGC-----------EEE---
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC--CcCH-HHHHHcCCCHHHe-----------EEe---
Confidence 58899999999999999999987776554433333 3444321 1111 1111222211111 000
Q ss_pred CCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHccC--CCEEEEeccCCCC----------C
Q 047171 1081 ATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKN--PMILLLDEATSAL----------D 1148 (1224)
Q Consensus 1081 ~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll~~--p~ILlLDEaTSaL----------D 1148 (1224)
. ..++ .|.+.++++++++ |+++|+||+|+-+ |
T Consensus 120 -------------------------------~---~~~~--e~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd 163 (349)
T 2zr9_A 120 -------------------------------Q---PDTG--EQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGD 163 (349)
T ss_dssp -------------------------------C---CSSH--HHHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC---
T ss_pred -------------------------------c---CCCH--HHHHHHHHHHHhcCCCCEEEEcChHhhcchhhhcccccc
Confidence 0 0112 2445678888765 9999999999998 3
Q ss_pred H---HHHHHHHHHHHHhc-----CCCeEEEEccCch----------------hhhh-cCEEEEEeCCEEEEecC
Q 047171 1149 S---ASENLVQEALEKMM-----VGRTCVVVAHRLS----------------TIQK-ADNIVVIKNGKVVEQGT 1197 (1224)
Q Consensus 1149 ~---~te~~I~~~l~~~~-----~~~TvI~IaHrl~----------------ti~~-aD~I~vl~~G~Ive~Gt 1197 (1224)
. ...+.+.+.++++. .++|||+++|-.. .+.+ ||.++.+..+++...|+
T Consensus 164 ~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~~~p~~~~gg~~l~~~ad~~l~lrr~~~~k~g~ 237 (349)
T 2zr9_A 164 SHVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGT 237 (349)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-----------CCSSHHHHHHHCSEEEEEEEEEEECSSS
T ss_pred chhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCcccCCCcccCCchHhhhccceEEEEEEeeeeecCc
Confidence 2 12223444444431 3899999999543 1444 99999998777655554
No 285
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=98.64 E-value=3.8e-09 Score=116.31 Aligned_cols=91 Identities=24% Similarity=0.226 Sum_probs=71.2
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHh---cCCCCCCcEEE--------ECCEecC-CCCHHHHhcccEEecCC------CCCC
Q 047171 342 DTPTIGLVGSSGSGKSTVISLLE---RFYDPVKGNIL--------LDGHKIK-KLQLKWLRSQMGLVNQE------PILF 403 (1224)
Q Consensus 342 ~~~~~~ivG~sGsGKSTl~~ll~---~~~~~~~G~i~--------~~g~~~~-~~~~~~~r~~i~~v~Q~------~~lf 403 (1224)
++.+++|+|||||||||++++|+ |++.|++|.|+ .+|.++. ......+++++++++|+ .+++
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 105 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVSQNGQLQVILE 105 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEEETTEEEEEET
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEecCCCCceEEEC
Confidence 46799999999999999999999 99999999999 9999984 45678899999999964 3566
Q ss_pred cccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhc
Q 047171 404 STSIKENILIGKPGASMETVVKAAQAANVHDFIMKL 439 (1224)
Q Consensus 404 ~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l 439 (1224)
..++.+||.. +++..++.....++.+...
T Consensus 106 ~~~v~~~i~~-------~~v~~~~s~~~~~~~vr~~ 134 (252)
T 4e22_A 106 GEDVSNEIRT-------ETVGNTASQAAAFPRVREA 134 (252)
T ss_dssp TEECTTGGGS-------HHHHHHHHHHTTSHHHHHH
T ss_pred CeehhHHHHH-------HHHHHHHHHhcccHHHHHH
Confidence 6788888742 4555555555555555444
No 286
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.64 E-value=1.8e-09 Score=113.02 Aligned_cols=126 Identities=17% Similarity=0.324 Sum_probs=57.6
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcCCC-------------CCCcEEEECCEecCCCCHHHHhcccEEecCCCCCCcccHHHH
Q 047171 344 PTIGLVGSSGSGKSTVISLLERFYD-------------PVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFSTSIKEN 410 (1224)
Q Consensus 344 ~~~~ivG~sGsGKSTl~~ll~~~~~-------------~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~n 410 (1224)
.+++|+||||||||||+++|+|+++ |..|++ +|.++...+.+..+..+ .|+..++..++..|
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~ge~--~g~~~~~~~~~~~~~~~---~~~~~~e~~~~~~~ 76 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEV--NGKDYNFVSVDEFKSMI---KNNEFIEWAQFSGN 76 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCGGGEECCCEEECSCCCTTCC--BTTTBEECCHHHHHHHH---HTTCEEEEEEETTE
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCCccceEEeeccccCCCCCcc--CCeeeeecCHHHHHHHH---hhcceeeEEEEece
Confidence 3689999999999999999999998 777875 77766655555554432 24444555555555
Q ss_pred HhcCCCCCCHHHHHHHHHH----------hcHHHHHHh--c------------cccccccccCCCCCCChHHHHHHHHHH
Q 047171 411 ILIGKPGASMETVVKAAQA----------ANVHDFIMK--L------------NDGYETKVGQFGVQLSGGQKQRIAIAR 466 (1224)
Q Consensus 411 i~~g~~~~~~~~~~~~~~~----------~~~~~~i~~--l------------~~g~~t~~~~~g~~LSgGq~qriaiAR 466 (1224)
+ ||.+ .+++.+..+. .++.. +.. . ++-+...+.++|..-....+||++-|+
T Consensus 77 ~-yg~~---~~~i~~~l~~g~~~il~~~~~g~~~-l~~~~~~~~~~i~i~~p~~~~l~~Rl~~Rg~~~~~~i~~rl~~~~ 151 (186)
T 3a00_A 77 Y-YGST---VASVKQVSKSGKTCILDIDMQGVKS-VKAIPELNARFLFIAPPSVEDLKKRLEGRGTETEESINKRLSAAQ 151 (186)
T ss_dssp E-EEEE---HHHHHHHHHTTCEEEEECCHHHHHH-HHTCGGGCCEEEEEECSCC--------------------------
T ss_pred e-ccCc---HHHHHHHHHcCCeEEEEEcHHHHHH-HHHhcCCCeEEEEEECcCHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 4 4433 2233332222 11111 222 1 134455566777777788888999888
Q ss_pred Hhc-----cCCCEEEEeC
Q 047171 467 ALI-----RDPKILLLDE 479 (1224)
Q Consensus 467 al~-----~~~~ililDE 479 (1224)
.-+ ..++.+|..+
T Consensus 152 ~~~~~~~~~~~d~vi~nd 169 (186)
T 3a00_A 152 AELAYAETGAHDKVIVND 169 (186)
T ss_dssp -------CCCCSEEEECS
T ss_pred HHHHhhcccCCcEEEECc
Confidence 755 5567777765
No 287
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.62 E-value=8.7e-11 Score=129.75 Aligned_cols=139 Identities=17% Similarity=0.188 Sum_probs=97.9
Q ss_pred EEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcceE
Q 047171 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIA 1057 (1224)
Q Consensus 978 I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~ 1057 (1224)
.+++++...|. ...+++++++++++| ++|+||+|||||||++++.+... .|.|.++|.++........+++++
T Consensus 26 ~~l~~l~~~~~---~~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~ 98 (254)
T 1ixz_A 26 EELKEIVEFLK---NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVR 98 (254)
T ss_dssp HHHHHHHHHHH---CHHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSCTTHHHHHHH
T ss_pred HHHHHHHHHHH---CHHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC--CCEEEeeHHHHHHHHhhHHHHHHH
Confidence 45566666663 235899999999999 99999999999999999999875 799999998876555555667788
Q ss_pred EEecCCC-CC-cccHHHHHc-cCCCCC-----CHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHH
Q 047171 1058 LVSQEPT-LF-AGTIRQNIV-YGKEVA-----TEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALAR 1129 (1224)
Q Consensus 1058 ~V~Qdp~-LF-~gTIreNl~-~~~~~~-----~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLAR 1129 (1224)
.++|+.. .+ .-++.||++ ++.... ..++..+. +..++. .|||||+||..+++
T Consensus 99 ~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~-----~~~ll~---------------~l~g~~~~~~~i~~ 158 (254)
T 1ixz_A 99 DLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQT-----LNQLLV---------------EMDGFEKDTAIVVM 158 (254)
T ss_dssp HHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHH-----HHHHHH---------------HHHTCCTTCCEEEE
T ss_pred HHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHH-----HHHHHH---------------HHhCCCCCCCEEEE
Confidence 8888864 33 345667773 321110 11111111 111111 36899999999999
Q ss_pred HHccCCCEEEEeccCC
Q 047171 1130 AVLKNPMILLLDEATS 1145 (1224)
Q Consensus 1130 All~~p~ILlLDEaTS 1145 (1224)
|+..+|++ ||++..
T Consensus 159 a~t~~p~~--ld~~l~ 172 (254)
T 1ixz_A 159 AATNRPDI--LDPALL 172 (254)
T ss_dssp EEESCGGG--SCGGGG
T ss_pred EccCCchh--CCHHHc
Confidence 99999987 788875
No 288
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.61 E-value=2.7e-08 Score=105.69 Aligned_cols=67 Identities=12% Similarity=0.130 Sum_probs=53.7
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcccEEecCCCCCCcc-cHHHHHh
Q 047171 342 DTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFST-SIKENIL 412 (1224)
Q Consensus 342 ~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~-ti~~ni~ 412 (1224)
++++++|+||||||||||+++|+|+++ .+.+++.++...+....+..++|++|++.+|.. ++.+|+.
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~~L~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVRALVKALA----EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFL 73 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSS----SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEE
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCC----CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcEE
Confidence 467999999999999999999999974 588888887766555557789999999987755 5555543
No 289
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.61 E-value=7.2e-09 Score=117.57 Aligned_cols=114 Identities=19% Similarity=0.192 Sum_probs=73.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcCCC--CCCcEEEE---CCEecCCCCHHHHhcccEEecCCCCCCc-ccHHHHHhcCCC
Q 047171 343 TPTIGLVGSSGSGKSTVISLLERFYD--PVKGNILL---DGHKIKKLQLKWLRSQMGLVNQEPILFS-TSIKENILIGKP 416 (1224)
Q Consensus 343 ~~~~~ivG~sGsGKSTl~~ll~~~~~--~~~G~i~~---~g~~~~~~~~~~~r~~i~~v~Q~~~lf~-~ti~~ni~~g~~ 416 (1224)
+.++||+||||||||||+++|.|++. |++|+|.+ ||.+. +. ..++.+|++ |+..++. -++.+|+.+..
T Consensus 80 g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~~~---~~-~~~~~~~~v-q~~~~~~~~~~~~~~~~~~- 153 (308)
T 1sq5_A 80 PYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFLH---PN-QVLKERGLM-KKKGFPESYDMHRLVKFVS- 153 (308)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBC---CH-HHHHHHTCT-TCTTSGGGBCHHHHHHHHH-
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCccC---cH-HHHHhCCEe-ecCCCCCCccHHHHHHHHH-
Confidence 45899999999999999999999998 99999999 88764 22 345678999 7765543 37777765321
Q ss_pred CCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCH
Q 047171 417 GASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDA 486 (1224)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~ililDE~ts~lD~ 486 (1224)
.+..|.. .+.......+.+ +|++.+.+.+.+|+++|+|.|....|.
T Consensus 154 ---------------------~l~~~~~-~i~~P~~~~~~~--~~~~~~~~~~~~~~ivIlEG~~l~~~~ 199 (308)
T 1sq5_A 154 ---------------------DLKSGVP-NVTAPVYSHLIY--DVIPDGDKTVVQPDILILEGLNVLQSG 199 (308)
T ss_dssp ---------------------HHTTTCS-CEEECCEETTTT--EECTTCCEEEC-CCEEEEECTTTTCCG
T ss_pred ---------------------HHhCCCC-ceeccccccccc--CcccccceecCCCCEEEECchhhCCCc
Confidence 0111111 000001111111 333333355678999999999987764
No 290
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=98.61 E-value=1.2e-08 Score=127.47 Aligned_cols=132 Identities=22% Similarity=0.213 Sum_probs=95.5
Q ss_pred eEEEeCCcEEEEEcCCCCChHHHHHHHhcccCC--CCceEEECCccCCCCCHHHHhcceEEEecCCCCCcccHHHHHc--
Q 047171 1000 TLKIEAGKTVALVGQSGSGKSTIIGLIERFYDP--QSGSVMVDERNIKSYNLRKLRSCIALVSQEPTLFAGTIRQNIV-- 1075 (1224)
Q Consensus 1000 sl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p--~~G~I~idG~di~~~~~~~lR~~i~~V~Qdp~LF~gTIreNl~-- 1075 (1224)
|+++++|++++|+|++|+|||||++.|++...+ ..|+| .+|.++.+....+.++.+++.+|.+.++..+++.||.
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDT 81 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDA 81 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEEC
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeC
Confidence 467889999999999999999999999987665 68999 8999999999999999999999999988888877874
Q ss_pred cCCCCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHH
Q 047171 1076 YGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLV 1155 (1224)
Q Consensus 1076 ~~~~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll~~p~ILlLDEaTSaLD~~te~~I 1155 (1224)
+|..+.. .++..+++ ..+.-++++| ||.++|..+++.+
T Consensus 82 pG~~~f~-~~~~~~l~----------------------------------------~ad~~ilVvD-~~~g~~~qt~~~~ 119 (665)
T 2dy1_A 82 PGYGDFV-GEIRGALE----------------------------------------AADAALVAVS-AEAGVQVGTERAW 119 (665)
T ss_dssp CCSGGGH-HHHHHHHH----------------------------------------HCSEEEEEEE-TTTCSCHHHHHHH
T ss_pred CCccchH-HHHHHHHh----------------------------------------hcCcEEEEEc-CCcccchhHHHHH
Confidence 3321111 12222221 2244577777 8888888777555
Q ss_pred HHHHHHhcCCCeEEEEccCchh
Q 047171 1156 QEALEKMMVGRTCVVVAHRLST 1177 (1224)
Q Consensus 1156 ~~~l~~~~~~~TvI~IaHrl~t 1177 (1224)
..+.. .+.++|++.|+++.
T Consensus 120 ~~~~~---~~ip~ilv~NKiD~ 138 (665)
T 2dy1_A 120 TVAER---LGLPRMVVVTKLDK 138 (665)
T ss_dssp HHHHH---TTCCEEEEEECGGG
T ss_pred HHHHH---ccCCEEEEecCCch
Confidence 44432 26677777777764
No 291
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.60 E-value=4.2e-11 Score=138.86 Aligned_cols=166 Identities=17% Similarity=0.184 Sum_probs=104.7
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhc------------CCCCCCcEEEECCEecCCCCH-HHHhccc---EEecCCCCCCcc
Q 047171 342 DTPTIGLVGSSGSGKSTVISLLER------------FYDPVKGNILLDGHKIKKLQL-KWLRSQM---GLVNQEPILFST 405 (1224)
Q Consensus 342 ~~~~~~ivG~sGsGKSTl~~ll~~------------~~~~~~G~i~~~g~~~~~~~~-~~~r~~i---~~v~Q~~~lf~~ 405 (1224)
.+..++|||++|+|||||++.|+| ..+|+.|.+.++|..+..+.. ..-++.+ .++.+.|-+..+
T Consensus 19 ~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~ 98 (392)
T 1ni3_A 19 NNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKG 98 (392)
T ss_dssp SCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccC
Confidence 456999999999999999999999 567999999998854321100 0001122 356676665543
Q ss_pred -cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCC--CEEEEeCCCC
Q 047171 406 -SIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDP--KILLLDEATS 482 (1224)
Q Consensus 406 -ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~--~ililDE~ts 482 (1224)
|..|++ . +......+.+. . +..+ .+..-......+||+. +| +++++|||++
T Consensus 99 ~s~~e~L-------~-~~fl~~ir~~d--~-il~V---vd~~~d~~i~~v~~~~------------dP~~di~ildeel~ 152 (392)
T 1ni3_A 99 ASTGVGL-------G-NAFLSHVRAVD--A-IYQV---VRAFDDAEIIHVEGDV------------DPIRDLSIIVDELL 152 (392)
T ss_dssp CCSSSSS-------C-HHHHHHHTTCS--E-EEEE---EECCCTTCSSCCSSSS------------CHHHHHHHHHHHHH
T ss_pred CcHHHHH-------H-HHHHHHHHHHH--H-HHHH---Hhccccceeeeecccc------------CcchhhhhchhhhH
Confidence 322221 0 11111111110 0 0000 0000022334456653 99 9999999999
Q ss_pred CCCHHHHHHHHHHHHHH-cC-CCeEEEEeCCcchhhc-cCEEE-EEeCc-eEEeecCh
Q 047171 483 ALDAESERIVQEALDQA-SQ-GRTMIIIAHRLSTIRK-ADLIG-VLQSG-RVIESGSH 535 (1224)
Q Consensus 483 ~lD~~~~~~i~~~l~~~-~~-~~t~i~i~H~l~~~~~-ad~i~-vl~~G-~i~~~g~~ 535 (1224)
.+|++..+...+.++.. .+ |.|+ ++|.+..+.. ||++. +|++| +++..|+.
T Consensus 153 ~~D~~~~~k~~~~l~~~~~~~g~ti--~sh~~~~~~~l~~~i~~~L~~G~~~~~~~~~ 208 (392)
T 1ni3_A 153 IKDAEFVEKHLEGLRKITSRGANTL--EMKAKKEEQAIIEKVYQYLTETKQPIRKGDW 208 (392)
T ss_dssp HHHHHHHHHHHHHHHHTTCCSSCSS--SHHHHHHHHHHHHHHHHHHHTTCSCGGGSCC
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCcc--ccccHHHHHHHHHHHHHHhccCCceeecCCC
Confidence 99999988888888776 43 5564 3999998876 99999 99999 88766654
No 292
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.60 E-value=2e-08 Score=113.03 Aligned_cols=91 Identities=21% Similarity=0.347 Sum_probs=66.5
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcccEEecCCCCCCcccHHHHHhcCCCCCCHHH
Q 047171 343 TPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFSTSIKENILIGKPGASMET 422 (1224)
Q Consensus 343 ~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~g~~~~~~~~ 422 (1224)
+.+++|+|++||||||++..|++.+.+..|+|.+.+.|... ....++
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r---------------------~~a~eq------------ 150 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFR---------------------AAAIEQ------------ 150 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTC---------------------HHHHHH------------
T ss_pred CeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEcccccc---------------------HHHHHH------------
Confidence 45899999999999999999999999998999887765421 001111
Q ss_pred HHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHH---HHHHHhccCCCEEEEeCCCC
Q 047171 423 VVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRI---AIARALIRDPKILLLDEATS 482 (1224)
Q Consensus 423 ~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qri---aiARal~~~~~ililDE~ts 482 (1224)
+. .+.+.+ |++. + ..+|||+.|++ +|+||+..+|+++|+|+|..
T Consensus 151 L~---------~~~~~~--gl~~-~----~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 151 LK---------IWGERV--GATV-I----SHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR 197 (306)
T ss_dssp HH---------HHHHHH--TCEE-E----CCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC
T ss_pred HH---------HHHHHc--CCcE-E----ecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence 11 111111 2222 1 24689999999 99999999999999999974
No 293
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.59 E-value=5.6e-09 Score=109.80 Aligned_cols=142 Identities=22% Similarity=0.207 Sum_probs=75.7
Q ss_pred EEEEEcCCCCChHHHHHHHhcccCC-----------CCceEEECCccCCC--CCHHHHhcceEEEecCCCCCcc--cHHH
Q 047171 1008 TVALVGQSGSGKSTIIGLIERFYDP-----------QSGSVMVDERNIKS--YNLRKLRSCIALVSQEPTLFAG--TIRQ 1072 (1224)
Q Consensus 1008 ~vaIVG~SGsGKSTL~~lL~rl~~p-----------~~G~I~idG~di~~--~~~~~lR~~i~~V~Qdp~LF~g--TIre 1072 (1224)
+++|+|++|||||||++.+.+...+ ..|+|.++|.++.- ++....++..++++|...-.++ ++.|
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 110 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYD 110 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEEEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEEEEE
Confidence 6999999999999999999998765 57899999976531 1111112223333332110000 1111
Q ss_pred HHccCCCCCCHHHHHHHHHHHhHHHHH-HhcccccccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeccCCCCCHHH
Q 047171 1073 NIVYGKEVATEAEIRKAAVLANAHEFI-SSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSAS 1151 (1224)
Q Consensus 1073 Nl~~~~~~~~deei~~al~~a~l~~~I-~~lp~gldt~vge~G~~LSGGQrQRlaLARAll~~p~ILlLDEaTSaLD~~t 1151 (1224)
+... .+.+++...++. +.+.. ...|- -.++.. ..|..-..+...+||++.++|+++++| ||++|.++
T Consensus 111 ~~~~----~s~~~~~~~~~~--~~~~~~~~~~i---~~v~nK-~Dl~~~~~~~~~~a~~l~~~~~~~~ld--~Sald~~~ 178 (191)
T 1oix_A 111 IAKH----LTYENVERWLKE--LRDHADSNIVI---MLVGNK-SDLRHLRAVPTDEARAFAEKNGLSFIE--TSALDSTN 178 (191)
T ss_dssp TTCH----HHHHTHHHHHHH--HHHHSCTTCEE---EEEEEC-GGGGGGCCSCHHHHHHHHHHTTCEEEE--CCTTTCTT
T ss_pred CcCH----HHHHHHHHHHHH--HHHhcCCCCcE---EEEEEC-cccccccccCHHHHHHHHHHcCCEEEE--EeCCCCCC
Confidence 1000 000111111110 00000 00010 011111 112211223478899999999999999 99999999
Q ss_pred HHHHHHHHHH
Q 047171 1152 ENLVQEALEK 1161 (1224)
Q Consensus 1152 e~~I~~~l~~ 1161 (1224)
...+.+.|.+
T Consensus 179 v~~l~~~l~~ 188 (191)
T 1oix_A 179 VEAAFQTILT 188 (191)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888888765
No 294
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=98.59 E-value=4.6e-09 Score=109.82 Aligned_cols=80 Identities=21% Similarity=0.330 Sum_probs=66.8
Q ss_pred EEeCCcEEEEEcCCCCChHHHHHHHhcccC-------------CCCceEEECCccCCCCCHHHHhcceEEEecCCCCCcc
Q 047171 1002 KIEAGKTVALVGQSGSGKSTIIGLIERFYD-------------PQSGSVMVDERNIKSYNLRKLRSCIALVSQEPTLFAG 1068 (1224)
Q Consensus 1002 ~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~-------------p~~G~I~idG~di~~~~~~~lR~~i~~V~Qdp~LF~g 1068 (1224)
...+|+.++|+||||||||||++.|++.++ |..|+ +||++..-++.+.+++.+ .|+.+++.+
T Consensus 15 ~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE--~~G~~y~fvs~~~f~~~i---~~~~fle~~ 89 (197)
T 3ney_A 15 YFQGRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSE--EDGKEYHFISTEEMTRNI---SANEFLEFG 89 (197)
T ss_dssp -CCSCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTC--CTTSSCEECCHHHHHHHH---HTTCEEEEE
T ss_pred CCCCCCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCe--eccccceeccHHHhhhhh---hhhhhhhhh
Confidence 445899999999999999999999999986 67887 799999999999998876 699999999
Q ss_pred cHHHHHccCCCCCCHHHHHHHH
Q 047171 1069 TIRQNIVYGKEVATEAEIRKAA 1090 (1224)
Q Consensus 1069 TIreNl~~~~~~~~deei~~al 1090 (1224)
++.+|. ||.+ .+.+.+++
T Consensus 90 ~~~~n~-YGt~---~~~v~~~l 107 (197)
T 3ney_A 90 SYQGNM-FGTK---FETVHQIH 107 (197)
T ss_dssp EETTEE-EEEE---HHHHHHHH
T ss_pred hhhcee-cccc---hhhHHHHH
Confidence 999994 7753 34455543
No 295
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.59 E-value=9.8e-08 Score=107.22 Aligned_cols=111 Identities=19% Similarity=0.149 Sum_probs=76.9
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcccEEecCCCCCCcccHHHHHhcCCCCCCHHH
Q 047171 343 TPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFSTSIKENILIGKPGASMET 422 (1224)
Q Consensus 343 ~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~g~~~~~~~~ 422 (1224)
+.+++++|++||||||++..|++.+.+..|+|.+.+.|+..-... +.
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~---------------------~q------------ 144 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAR---------------------EQ------------ 144 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHH---------------------HH------------
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHH---------------------HH------------
Confidence 458999999999999999999999999999999887765321000 00
Q ss_pred HHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCC-CCCCCHHHHHHHHHHHHHH
Q 047171 423 VVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEA-TSALDAESERIVQEALDQA 499 (1224)
Q Consensus 423 ~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~ililDE~-ts~lD~~~~~~i~~~l~~~ 499 (1224)
+...++. . |++-... +..-+..+-+|.+|+++...+++++|+|+| ++++|...-..+.+..+..
T Consensus 145 l~~~~~~-------~----~l~~~~~--~~~~~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~ 209 (295)
T 1ls1_A 145 LRLLGEK-------V----GVPVLEV--MDGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVL 209 (295)
T ss_dssp HHHHHHH-------H----TCCEEEC--CTTCCHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHHHHHHHHH
T ss_pred HHHhccc-------C----CeEEEEc--CCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHHHHHHHHhhhc
Confidence 0000110 0 2221111 112344566899999998899999999999 9999988777777666554
No 296
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.58 E-value=5.7e-09 Score=109.71 Aligned_cols=141 Identities=20% Similarity=0.154 Sum_probs=75.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCC-----------CCcEEEECCEecCC--CCHHHHhcccEEecCCCCCCcc--cHHH
Q 047171 345 TIGLVGSSGSGKSTVISLLERFYDP-----------VKGNILLDGHKIKK--LQLKWLRSQMGLVNQEPILFST--SIKE 409 (1224)
Q Consensus 345 ~~~ivG~sGsGKSTl~~ll~~~~~~-----------~~G~i~~~g~~~~~--~~~~~~r~~i~~v~Q~~~lf~~--ti~~ 409 (1224)
+++|+|++|||||||++.+.|...+ +.|+|.++|.++.- ++....++..++++|...-... ++.|
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 110 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYD 110 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEEEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEEEEE
Confidence 7899999999999999999998765 57999999976531 1111112222333321100000 1111
Q ss_pred HHhcCCCCCCHHHHHHHHHHhcHHHHHHhc-ccccc-ccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHH
Q 047171 410 NILIGKPGASMETVVKAAQAANVHDFIMKL-NDGYE-TKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAE 487 (1224)
Q Consensus 410 ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l-~~g~~-t~~~~~g~~LSgGq~qriaiARal~~~~~ililDE~ts~lD~~ 487 (1224)
+... .+.+.+....+ .+... +.... -.++.+ ..|..-..+...+||+++.+|+++++| ||++|.+
T Consensus 111 ~~~~----~s~~~~~~~~~------~~~~~~~~~~~i~~v~nK-~Dl~~~~~~~~~~a~~l~~~~~~~~ld--~Sald~~ 177 (191)
T 1oix_A 111 IAKH----LTYENVERWLK------ELRDHADSNIVIMLVGNK-SDLRHLRAVPTDEARAFAEKNGLSFIE--TSALDST 177 (191)
T ss_dssp TTCH----HHHHTHHHHHH------HHHHHSCTTCEEEEEEEC-GGGGGGCCSCHHHHHHHHHHTTCEEEE--CCTTTCT
T ss_pred CcCH----HHHHHHHHHHH------HHHHhcCCCCcEEEEEEC-cccccccccCHHHHHHHHHHcCCEEEE--EeCCCCC
Confidence 1000 00111111000 01110 00000 112222 112222234578899999999999999 9999999
Q ss_pred HHHHHHHHHHH
Q 047171 488 SERIVQEALDQ 498 (1224)
Q Consensus 488 ~~~~i~~~l~~ 498 (1224)
....+.+.+.+
T Consensus 178 ~v~~l~~~l~~ 188 (191)
T 1oix_A 178 NVEAAFQTILT 188 (191)
T ss_dssp THHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 88777776654
No 297
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.57 E-value=2.5e-09 Score=132.86 Aligned_cols=157 Identities=14% Similarity=0.146 Sum_probs=103.4
Q ss_pred ccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCC-ceEEECCccCCCCCHHHHhcceEEEecCC--------
Q 047171 993 QMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQS-GSVMVDERNIKSYNLRKLRSCIALVSQEP-------- 1063 (1224)
Q Consensus 993 ~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~-G~I~idG~di~~~~~~~lR~~i~~V~Qdp-------- 1063 (1224)
..+++++++.+++|+.+.|+||+|+||||++++|.++.++.. |.+.+++.+.... ...++++||..
T Consensus 47 ~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~-----~p~i~~~p~g~~~~~~e~~ 121 (604)
T 3k1j_A 47 EHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDEN-----MPRIKTVPACQGRRIVEKY 121 (604)
T ss_dssp HHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTT-----SCEEEEEETTHHHHHHHHH
T ss_pred hhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCccccc-----CCcEEEEecchHHHHHHHH
Confidence 358999999999999999999999999999999999999887 8899988766543 34588888764
Q ss_pred --------------CCC-cccHHHHHccCCCCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHH
Q 047171 1064 --------------TLF-AGTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALA 1128 (1224)
Q Consensus 1064 --------------~LF-~gTIreNl~~~~~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLA 1128 (1224)
+.| ..++.+|+...+.......+... ......+++.. ++..- .....+|+|++|++..+
T Consensus 122 ~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~-~~~~~~~L~G~----~~~~~-~~~g~~~~g~~~~i~~g 195 (604)
T 3k1j_A 122 REKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDA-TGAHAGALLGD----VRHDP-FQSGGLGTPAHERVEPG 195 (604)
T ss_dssp HHHHHHHTCC-----------CCCEEEECCTTCSSCCEEEC-TTCCHHHHHCE----ECCCC-C----CCCCGGGGEECC
T ss_pred HHhhccchhhhhhcccccccccccceeeccccCCCCCEEEc-CCCCHHhcCce----EEech-hhcCCccccccccccCc
Confidence 111 12333343322110000000000 00011112211 11111 12235999999999999
Q ss_pred HHHccCCCEEEEeccCCCCCHHHHHHHHHHHHH
Q 047171 1129 RAVLKNPMILLLDEATSALDSASENLVQEALEK 1161 (1224)
Q Consensus 1129 RAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~ 1161 (1224)
+....++.+|+|||... |++.....+.+.|++
T Consensus 196 ~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 196 MIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp HHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred eeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 99999999999999998 899999999999875
No 298
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.57 E-value=1.6e-09 Score=116.25 Aligned_cols=75 Identities=17% Similarity=0.194 Sum_probs=52.0
Q ss_pred cEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCH-------
Q 047171 977 FIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNL------- 1049 (1224)
Q Consensus 977 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~------- 1049 (1224)
.|+++|+...|. . ++++.+ +.++|+||||||||||+++|.|++.|++|+|.++|.++...++
T Consensus 9 ~l~l~~~~~~~~--------~--~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 77 (227)
T 1qhl_A 9 SLTLINWNGFFA--------R--TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTEAGATSGSRDKGL 77 (227)
T ss_dssp EEEEEEETTEEE--------E--EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC------------------C
T ss_pred EEEEEeeecccC--------C--EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECCEEcccCCccccccch
Confidence 478888865442 1 566667 8999999999999999999999999999999999998843322
Q ss_pred -HHHhcceEEEecC
Q 047171 1050 -RKLRSCIALVSQE 1062 (1224)
Q Consensus 1050 -~~lR~~i~~V~Qd 1062 (1224)
...+.++++|+|+
T Consensus 78 ~~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 78 HGKLKAGVCYSMLD 91 (227)
T ss_dssp GGGBCSSEEEEEEE
T ss_pred hhHhhcCcEEEEEe
Confidence 2357789999985
No 299
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=98.56 E-value=4.6e-08 Score=117.16 Aligned_cols=177 Identities=12% Similarity=0.134 Sum_probs=110.2
Q ss_pred cceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCc-eEEECCccCCCCCHHHHhcce-EEEecCCCCCcccHH
Q 047171 994 MIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSG-SVMVDERNIKSYNLRKLRSCI-ALVSQEPTLFAGTIR 1071 (1224)
Q Consensus 994 ~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G-~I~idG~di~~~~~~~lR~~i-~~V~Qdp~LF~gTIr 1071 (1224)
+.|++++.-+++|+.+.|.|++|+||||++..+++...+..| .+.+-+.+ .+...+++++ +....- . .
T Consensus 191 ~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E---~s~~~l~~r~~~~~~~~------~-~ 260 (454)
T 2r6a_A 191 TELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLE---MSAQQLVMRMLCAEGNI------N-A 260 (454)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESS---SCHHHHHHHHHHHHHTC------C-H
T ss_pred HHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECC---CCHHHHHHHHHHHHcCC------C-H
Confidence 468888888999999999999999999999999887766445 56665543 3445554432 111100 0 0
Q ss_pred HHHccCCCCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHc--cCCCEEEEeccCCCCCH
Q 047171 1072 QNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVL--KNPMILLLDEATSALDS 1149 (1224)
Q Consensus 1072 eNl~~~~~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll--~~p~ILlLDEaTSaLD~ 1149 (1224)
+++.-| ..++++.....+. .+.+...|- .+.+ ...+|++|.+ +.||++. .+|+++++|+++.-.+.
T Consensus 261 ~~l~~g--~l~~~~~~~~~~a---~~~l~~~~l----~i~d-~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~~ 328 (454)
T 2r6a_A 261 QNLRTG--KLTPEDWGKLTMA---MGSLSNAGI----YIDD-TPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQGS 328 (454)
T ss_dssp HHHHTS--CCCHHHHHHHHHH---HHHHHSSCE----EEEC-CTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCCS
T ss_pred HHHhcC--CCCHHHHHHHHHH---HHHHhcCCE----EEEC-CCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhccC
Confidence 123222 3455554333222 222322221 2222 2468999876 6777776 57999999999997743
Q ss_pred H--------HHHHHHHHHHHhc--CCCeEEEEcc---------C--ch--------hhh-hcCEEEEEeCCEE
Q 047171 1150 A--------SENLVQEALEKMM--VGRTCVVVAH---------R--LS--------TIQ-KADNIVVIKNGKV 1192 (1224)
Q Consensus 1150 ~--------te~~I~~~l~~~~--~~~TvI~IaH---------r--l~--------ti~-~aD~I~vl~~G~I 1192 (1224)
. .-..+.+.|+.+. .+++||+++| . +. .+. .||.|+.|..++.
T Consensus 329 ~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~ 401 (454)
T 2r6a_A 329 GRSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDDY 401 (454)
T ss_dssp CC----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEETTC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEecccc
Confidence 1 1244555565443 3789999999 1 32 344 4999999986654
No 300
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.56 E-value=5.5e-09 Score=117.15 Aligned_cols=69 Identities=22% Similarity=0.268 Sum_probs=41.0
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEE---CCEecCCCCHHHHhcccEEecCCCCCCc-----ccHHHHHh
Q 047171 342 DTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILL---DGHKIKKLQLKWLRSQMGLVNQEPILFS-----TSIKENIL 412 (1224)
Q Consensus 342 ~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~---~g~~~~~~~~~~~r~~i~~v~Q~~~lf~-----~ti~~ni~ 412 (1224)
++++++|+||||||||||+|.|.|...|..|+|.+ +|+++.... ...+..+|+++|.|-+.. .|+ ||+.
T Consensus 172 ~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~-~~~~~~~g~v~dtpg~~~~~l~~lt~-e~l~ 248 (307)
T 1t9h_A 172 QDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHV-ELIHTSGGLVADTPGFSSLEFTDIEE-EELG 248 (307)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC-------------------CCCC-CEEEETTEEEESSCSCSSCCCTTCCH-HHHG
T ss_pred CCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHH-HHhhcCCEEEecCCCccccccccCCH-HHHH
Confidence 46699999999999999999999999999999999 888775432 222323899999997653 478 9984
No 301
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=98.50 E-value=3e-08 Score=105.57 Aligned_cols=105 Identities=17% Similarity=0.178 Sum_probs=64.6
Q ss_pred ceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcceEEEecCCCCCcccHHHHHccC
Q 047171 998 GLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIALVSQEPTLFAGTIRQNIVYG 1077 (1224)
Q Consensus 998 ~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qdp~LF~gTIreNl~~~ 1077 (1224)
++-=++++|+.++|+|++||||||+++.|.+.++ .+.+++||+.++++ +|+.++
T Consensus 13 ~~~~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~-----------------------~~~~i~~D~~~~~~---~~~~~~ 66 (207)
T 2qt1_A 13 GLVPRGSKTFIIGISGVTNSGKTTLAKNLQKHLP-----------------------NCSVISQDDFFKPE---SEIETD 66 (207)
T ss_dssp -CCCCSCCCEEEEEEESTTSSHHHHHHHHHTTST-----------------------TEEEEEGGGGBCCG---GGSCBC
T ss_pred cccccCCCCeEEEEECCCCCCHHHHHHHHHHhcC-----------------------CcEEEeCCccccCH---hHhhcc
Confidence 3344778899999999999999999999999875 38999999999876 566654
Q ss_pred CCCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEec
Q 047171 1078 KEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDE 1142 (1224)
Q Consensus 1078 ~~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll~~p~ILlLDE 1142 (1224)
.+...+.++.+++....+.+++..+..+. +- ..++.|.++ ..+++++|+|=
T Consensus 67 ~~~~~~~~~~~~~~~~~l~~~i~~~l~~~---~~---~~~~~~~~~--------~~~~~~vi~eg 117 (207)
T 2qt1_A 67 KNGFLQYDVLEALNMEKMMSAISCWMESA---RH---SVVSTDQES--------AEEIPILIIEG 117 (207)
T ss_dssp TTSCBCCSSGGGBCHHHHHHHHHHHHHHH---TT---SSCCC-------------CCCCEEEEEC
T ss_pred ccCCChhHHHHHhHHHHHHHHHHHHHhCC---CC---CCcCCCeee--------cCCCCEEEEee
Confidence 33222222233333344445544432221 10 134555554 45677888843
No 302
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.48 E-value=1.7e-08 Score=105.00 Aligned_cols=80 Identities=20% Similarity=0.226 Sum_probs=61.6
Q ss_pred eCCcEEEEEcCCCCChHHHHHHHhcccCC-CCceEE----------ECCccCCCCCHHHHhcceEEEecCCCCCcccHHH
Q 047171 1004 EAGKTVALVGQSGSGKSTIIGLIERFYDP-QSGSVM----------VDERNIKSYNLRKLRSCIALVSQEPTLFAGTIRQ 1072 (1224)
Q Consensus 1004 ~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p-~~G~I~----------idG~di~~~~~~~lR~~i~~V~Qdp~LF~gTIre 1072 (1224)
.+|+.++|+||||||||||+++|.+++++ ..|.|. +||++...++.+.+++. ++|+.+++.+++.+
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ttr~~~~ge~~g~~~~~~~~~~~~~~---~~~~~~l~~~~~~~ 79 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKDEENGKNYYFVSHDQMMQD---ISNNEYLEYGSHED 79 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC---CCBTTTBEECCHHHHHHH---HHTTCEEEEEEETT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeeccCCCCCccccCCCeeEEeCHHHHHHH---HHcCCceEEEEEcC
Confidence 36999999999999999999999999863 445543 47888877888888764 57888999999999
Q ss_pred HHccCCCCCCHHHHHHHH
Q 047171 1073 NIVYGKEVATEAEIRKAA 1090 (1224)
Q Consensus 1073 Nl~~~~~~~~deei~~al 1090 (1224)
| .+|.+ .+.+.+++
T Consensus 80 n-~yg~~---~~~i~~~l 93 (180)
T 1kgd_A 80 A-MYGTK---LETIRKIH 93 (180)
T ss_dssp E-EEEEE---HHHHHHHH
T ss_pred c-ccccc---HHHHHHHH
Confidence 9 45533 44455444
No 303
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.45 E-value=2.2e-09 Score=124.07 Aligned_cols=137 Identities=10% Similarity=0.101 Sum_probs=87.8
Q ss_pred cceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcceEEEecCCCCCcccHHHH
Q 047171 994 MIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIALVSQEPTLFAGTIRQN 1073 (1224)
Q Consensus 994 ~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qdp~LF~gTIreN 1073 (1224)
.+|+++|+++++|+.++|+||+|||||||+++|.+.+ +|.+..-+ ... +.++..++++||...+| .|+
T Consensus 157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~---~g~~~~~~--~~~---~~~~~~lg~~~q~~~~l----~dd 224 (377)
T 1svm_A 157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC---GGKALNVN--LPL---DRLNFELGVAIDQFLVV----FED 224 (377)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH---CCEEECCS--SCT---TTHHHHHGGGTTCSCEE----ETT
T ss_pred HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc---CCcEEEEe--ccc---hhHHHHHHHhcchhHHH----HHH
Confidence 4899999999999999999999999999999999964 67776511 111 22334588889987642 234
Q ss_pred HccCCC---CC-CHHHHHHHHHHHhHHHHHHh---------cccccc-----cccCCCCCCCChHHHHHHHHHHHHccCC
Q 047171 1074 IVYGKE---VA-TEAEIRKAAVLANAHEFISS---------TEDGYD-----TYCGERGVQLSGGQKQRIALARAVLKNP 1135 (1224)
Q Consensus 1074 l~~~~~---~~-~deei~~al~~a~l~~~I~~---------lp~gld-----t~vge~G~~LSGGQrQRlaLARAll~~p 1135 (1224)
++.... .. ..+.+. ....+.+.+.. .|+.++ -.+..+...+++|.+||++.+.+++.+|
T Consensus 225 ~~~~~~~~r~l~~~~~~~---~~~~l~~~ldG~v~v~~~tn~~~~l~alf~pg~ld~~~~~l~~~~~~rl~~~~~l~~~p 301 (377)
T 1svm_A 225 VKGTGGESRDLPSGQGIN---NLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMNEYSVPKTLQARFVKQIDFRPKD 301 (377)
T ss_dssp CCCSTTTTTTCCCCSHHH---HHHTTHHHHHCSSCEEECCSSSCCEEECCCCEEEEECSCCCCHHHHTTEEEEEECCCCH
T ss_pred HHHHHHHHhhccccCcch---HHHHHHHHhcCCCeEeeccCchhhHHHhhcCcccChhHHhhcHHHHHHHhhhhccCCCC
Confidence 443221 00 001110 11223333320 000000 0123344568999999999998889999
Q ss_pred CEEE-EeccCC
Q 047171 1136 MILL-LDEATS 1145 (1224)
Q Consensus 1136 ~ILl-LDEaTS 1145 (1224)
++++ ||+|+.
T Consensus 302 DLliyLd~~~~ 312 (377)
T 1svm_A 302 YLKHCLERSEF 312 (377)
T ss_dssp HHHHHHHTCTH
T ss_pred CeEEEEeCCHH
Confidence 9988 999987
No 304
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.44 E-value=3.7e-07 Score=104.90 Aligned_cols=74 Identities=22% Similarity=0.368 Sum_probs=49.2
Q ss_pred HHHHHHHhccC--CCEEEEeCCCCCC----------CH---HHHHHHHHHHHHH-----cCCCeEEEEeCCcc-------
Q 047171 461 RIAIARALIRD--PKILLLDEATSAL----------DA---ESERIVQEALDQA-----SQGRTMIIIAHRLS------- 513 (1224)
Q Consensus 461 riaiARal~~~--~~ililDE~ts~l----------D~---~~~~~i~~~l~~~-----~~~~t~i~i~H~l~------- 513 (1224)
-+.+++++.++ |+++++|++++.+ |+ ...+.+.+.+.++ ..|.|+|+++|-..
T Consensus 127 ~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~~ 206 (349)
T 2zr9_A 127 ALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMFG 206 (349)
T ss_dssp HHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC--------
T ss_pred HHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCcccC
Confidence 34578888755 9999999999998 32 1222344444433 24899999999543
Q ss_pred ---------hhhc-cCEEEEEeCceEEeecC
Q 047171 514 ---------TIRK-ADLIGVLQSGRVIESGS 534 (1224)
Q Consensus 514 ---------~~~~-ad~i~vl~~G~i~~~g~ 534 (1224)
.+++ ||.++.++.+++...|+
T Consensus 207 ~p~~~~gg~~l~~~ad~~l~lrr~~~~k~g~ 237 (349)
T 2zr9_A 207 SPETTTGGKALKFYASVRLDVRRIETLKDGT 237 (349)
T ss_dssp ---CCSSHHHHHHHCSEEEEEEEEEEECSSS
T ss_pred CCcccCCchHhhhccceEEEEEEeeeeecCc
Confidence 1444 99999998887765553
No 305
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.43 E-value=1.7e-09 Score=124.44 Aligned_cols=134 Identities=16% Similarity=0.189 Sum_probs=79.8
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcCC----CCCCcEEEECCEecCCCCHHHHhcccEEecCCCCCCcccHHHHHhcCCCCCC
Q 047171 344 PTIGLVGSSGSGKSTVISLLERFY----DPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFSTSIKENILIGKPGAS 419 (1224)
Q Consensus 344 ~~~~ivG~sGsGKSTl~~ll~~~~----~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~g~~~~~ 419 (1224)
..++|+||+|+|||||+++|+|.+ .+++|.+..++.++..+.....+..|.++.|...++. ++.|++.....+..
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~~~~~~v~~iDE~~~l~~-~~~e~L~~~~~~~~ 130 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDEIHRLNK-AVEELLYSAIEDFQ 130 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHHCCTTCEEEEETGGGCCH-HHHHHHHHHHHTSC
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHHccCCCEEEEcchhhcCH-HHHHHHHHHHHhcc
Confidence 478999999999999999999998 6778887776665532211112457999999887765 78887742110000
Q ss_pred HHHH---HHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHH
Q 047171 420 METV---VKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEAL 496 (1224)
Q Consensus 420 ~~~~---~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~ililDE~ts~lD~~~~~~i~~~l 496 (1224)
..-+ ....+ .+...+..+ ++.. ...+...||+|+|||++++ ..||+.+...+.+.+
T Consensus 131 ~~i~~~~~~~~~--~i~~~l~~~--~li~-at~~~~~Ls~~l~sR~~l~----------------~~Ld~~~~~~l~~iL 189 (334)
T 1in4_A 131 IDIMIGKGPSAK--SIRIDIQPF--TLVG-ATTRSGLLSSPLRSRFGII----------------LELDFYTVKELKEII 189 (334)
T ss_dssp CCC-----------------CCC--EEEE-EESCGGGSCHHHHTTCSEE----------------EECCCCCHHHHHHHH
T ss_pred cceeeccCcccc--cccccCCCe--EEEE-ecCCcccCCHHHHHhcCce----------------eeCCCCCHHHHHHHH
Confidence 0000 00000 011111111 2221 2344568999999998655 567776666666666
Q ss_pred HHH
Q 047171 497 DQA 499 (1224)
Q Consensus 497 ~~~ 499 (1224)
++.
T Consensus 190 ~~~ 192 (334)
T 1in4_A 190 KRA 192 (334)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 306
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.42 E-value=5.5e-08 Score=115.23 Aligned_cols=52 Identities=19% Similarity=0.207 Sum_probs=47.0
Q ss_pred EEeEEEECCCCCCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCC
Q 047171 330 FKDVDFSYPTRPDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQ 385 (1224)
Q Consensus 330 ~~~v~f~y~~~~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~ 385 (1224)
++||+|..+ + ++++|+||||||||||+++|+|+++|++|+|.++|+++...+
T Consensus 20 l~~vsl~i~---~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~ 71 (483)
T 3euj_A 20 FFARTFDFD---E-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTEAGST 71 (483)
T ss_dssp EEEEEEECC---S-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTSCSCC
T ss_pred ccceEEEEc---c-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEcccCc
Confidence 678999875 3 699999999999999999999999999999999999887654
No 307
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=98.41 E-value=1e-08 Score=122.36 Aligned_cols=151 Identities=19% Similarity=0.256 Sum_probs=84.9
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhc--CCCCCCcEEEECCEecCCCCHHHHhcccEEecCCCCCCcccHHHHHhcCCCCCCH
Q 047171 343 TPTIGLVGSSGSGKSTVISLLER--FYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFSTSIKENILIGKPGASM 420 (1224)
Q Consensus 343 ~~~~~ivG~sGsGKSTl~~ll~~--~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~g~~~~~~ 420 (1224)
.+.++|.|+|||||||+++.|.. ++.++.|++.+.+.|.+......+. .-|+++. +|.+| .
T Consensus 167 ~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~~el~~~~-------~lPhl~~-~Vvtd---------~ 229 (512)
T 2ius_A 167 MPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSVYE-------GIPHLLT-EVVTD---------M 229 (512)
T ss_dssp SCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSSSGGGGGT-------TCTTBSS-SCBCS---------H
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCchhhhhhhc-------cCCcccc-eeecC---------H
Confidence 45889999999999999999876 5677778888877776653322221 1122221 11111 1
Q ss_pred HHHHHHHHHh-----cHHHHHHhccccccccccC---CCCCCChHHHHHH----------HHHHHhccCCC-EEEEeCCC
Q 047171 421 ETVVKAAQAA-----NVHDFIMKLNDGYETKVGQ---FGVQLSGGQKQRI----------AIARALIRDPK-ILLLDEAT 481 (1224)
Q Consensus 421 ~~~~~~~~~~-----~~~~~i~~l~~g~~t~~~~---~g~~LSgGq~qri----------aiARal~~~~~-ililDE~t 481 (1224)
++..++++.+ .=.+.+... |.....+. ....+||||+||. ++|+++...|. ++++||++
T Consensus 230 ~~a~~~L~~~~~EmerR~~ll~~~--Gv~~i~~yn~~~~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlvIDE~~ 307 (512)
T 2ius_A 230 KDAANALRWCVNEMERRYKLMSAL--GVRNLAGYNEKIAEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDEFA 307 (512)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT--TCSSHHHHHHHHHHHHHTTCCCBCTTC---------CCBCCCCCEEEEEEETHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc--CCccHHHHHHHHHHHhhcCCcccccccccccchhccccccccCCcEEEEEeCHH
Confidence 1111111100 001222222 22211110 0124788888753 46778888898 89999999
Q ss_pred CCCCHHHHHHHHHHHHH----Hc-CCCeEEEEeCCcc
Q 047171 482 SALDAESERIVQEALDQ----AS-QGRTMIIIAHRLS 513 (1224)
Q Consensus 482 s~lD~~~~~~i~~~l~~----~~-~~~t~i~i~H~l~ 513 (1224)
+.+|... ..+.+.+.. .+ .|.++|++|||.+
T Consensus 308 ~ll~~~~-~~~~~~l~~Lar~gRa~GI~LIlaTQrp~ 343 (512)
T 2ius_A 308 DLMMTVG-KKVEELIARLAQKARAAGIHLVLATQRPS 343 (512)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHCGGGTEEEEEEESCCC
T ss_pred HHHhhhh-HHHHHHHHHHHHHhhhCCcEEEEEecCCc
Confidence 9888432 333344432 22 2779999999998
No 308
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.41 E-value=1.3e-09 Score=122.03 Aligned_cols=108 Identities=17% Similarity=0.177 Sum_probs=74.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcccEEecCCCC-CCc-ccHHHHH-hcCCCCCC--
Q 047171 345 TIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPI-LFS-TSIKENI-LIGKPGAS-- 419 (1224)
Q Consensus 345 ~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~-lf~-~ti~~ni-~~g~~~~~-- 419 (1224)
-++|+||+|||||||+++|++... .|.|.++|.++.+......++.+++++|++. .++ -++.||| .++.....
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~ 152 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGV 152 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSTTTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC-----
T ss_pred eEEEECCCcChHHHHHHHHHHHcC--CCEEEecHHHHHHHHhhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhccccccc
Confidence 389999999999999999999875 7999999887755444445567888888763 333 3666777 34321110
Q ss_pred ---HHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCCE
Q 047171 420 ---METVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKI 474 (1224)
Q Consensus 420 ---~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~i 474 (1224)
.++.. +.+..+. ..|||||+||+.+++|+..+|++
T Consensus 153 ~~~~~~~~---------~~~~~ll-----------~~lsgg~~~~~~i~~a~t~~p~~ 190 (278)
T 1iy2_A 153 GGGNDERE---------QTLNQLL-----------VEMDGFEKDTAIVVMAATNRPDI 190 (278)
T ss_dssp ---CHHHH---------HHHHHHH-----------HHHTTCCTTCCEEEEEEESCTTS
T ss_pred CCcchHHH---------HHHHHHH-----------HHHhCCCCCCCEEEEEecCCchh
Confidence 01111 1111221 24789999999999999999986
No 309
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=98.36 E-value=3.3e-08 Score=103.31 Aligned_cols=69 Identities=23% Similarity=0.328 Sum_probs=60.1
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCCC-------------CCCcEEEECCEecCCCCHHHHhcccEEecCCCCCCcccHH
Q 047171 342 DTPTIGLVGSSGSGKSTVISLLERFYD-------------PVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFSTSIK 408 (1224)
Q Consensus 342 ~~~~~~ivG~sGsGKSTl~~ll~~~~~-------------~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~ 408 (1224)
.+..++|+||||||||||++.|.+.++ |..|+ +||.+..-++.+.+++.+ .|+.+++.+++.
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE--~~G~~y~fvs~~~f~~~i---~~~~fle~~~~~ 92 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSE--EDGKEYHFISTEEMTRNI---SANEFLEFGSYQ 92 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTC--CTTSSCEECCHHHHHHHH---HTTCEEEEEEET
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCe--eccccceeccHHHhhhhh---hhhhhhhhhhhh
Confidence 456899999999999999999999886 77887 799998888888888765 689999999999
Q ss_pred HHHhcCCC
Q 047171 409 ENILIGKP 416 (1224)
Q Consensus 409 ~ni~~g~~ 416 (1224)
+| .||.+
T Consensus 93 ~n-~YGt~ 99 (197)
T 3ney_A 93 GN-MFGTK 99 (197)
T ss_dssp TE-EEEEE
T ss_pred ce-ecccc
Confidence 99 58864
No 310
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.35 E-value=1.5e-09 Score=119.80 Aligned_cols=112 Identities=19% Similarity=0.202 Sum_probs=75.4
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcccEEecCCCC-CCc-ccHHHHH-hcCCCCCC---
Q 047171 346 IGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPI-LFS-TSIKENI-LIGKPGAS--- 419 (1224)
Q Consensus 346 ~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~-lf~-~ti~~ni-~~g~~~~~--- 419 (1224)
++|+||+|||||||+++|++... .|.|.++|.++........++.+++++|+.. .++ -++.||| .++.....
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~ 129 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVG 129 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSCTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC-------
T ss_pred EEEECCCCCCHHHHHHHHHHHhC--CCEEEeeHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCcccc
Confidence 89999999999999999999875 7999999887754444445567888888753 333 3666676 34321100
Q ss_pred --HHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCC
Q 047171 420 --METVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEAT 481 (1224)
Q Consensus 420 --~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~ililDE~t 481 (1224)
.++.. +.+..+. ..|||||+||+.+++|+..+|++ ||++.
T Consensus 130 ~~~~~~~---------~~~~~ll-----------~~l~g~~~~~~~i~~a~t~~p~~--ld~~l 171 (254)
T 1ixz_A 130 GGNDERE---------QTLNQLL-----------VEMDGFEKDTAIVVMAATNRPDI--LDPAL 171 (254)
T ss_dssp --CHHHH---------HHHHHHH-----------HHHHTCCTTCCEEEEEEESCGGG--SCGGG
T ss_pred ccchHHH---------HHHHHHH-----------HHHhCCCCCCCEEEEEccCCchh--CCHHH
Confidence 01111 1111111 24689999999999999999987 56654
No 311
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=98.34 E-value=1.5e-07 Score=102.98 Aligned_cols=67 Identities=19% Similarity=0.199 Sum_probs=42.6
Q ss_pred HHHHHHHHhc--cCCCEEEEeCCCCCC--CHHH-HHHHHHHHHHH-cCCCeEEEEeCCcch--------h-hccCEEEEE
Q 047171 460 QRIAIARALI--RDPKILLLDEATSAL--DAES-ERIVQEALDQA-SQGRTMIIIAHRLST--------I-RKADLIGVL 524 (1224)
Q Consensus 460 qriaiARal~--~~~~ililDE~ts~l--D~~~-~~~i~~~l~~~-~~~~t~i~i~H~l~~--------~-~~ad~i~vl 524 (1224)
+....++.++ .+|+++++|++++-+ |+.. .+.+.+..+.+ ..|.|+|+++|.... + ..||.|+.|
T Consensus 115 ~~~~~i~~~~~~~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L 194 (247)
T 2dr3_A 115 EFIEVLRQAIRDINAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRL 194 (247)
T ss_dssp HHHHHHHHHHHHHTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEE
T ss_pred HHHHHHHHHHHHhCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEE
Confidence 3333344443 479999999999887 5433 33333333322 358899999997764 3 348999999
Q ss_pred eC
Q 047171 525 QS 526 (1224)
Q Consensus 525 ~~ 526 (1224)
+.
T Consensus 195 ~~ 196 (247)
T 2dr3_A 195 DL 196 (247)
T ss_dssp EE
T ss_pred EE
Confidence 75
No 312
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.32 E-value=1.7e-07 Score=99.01 Aligned_cols=36 Identities=25% Similarity=0.224 Sum_probs=30.4
Q ss_pred HHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHh
Q 047171 1125 IALARAVLKNPMILLLDEATSALDSASENLVQEALEKM 1162 (1224)
Q Consensus 1125 laLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~ 1162 (1224)
...||++.++|+++++| ||++|.+....+.+.|.+.
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~ 165 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTE 165 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHH
Confidence 45689999999999999 9999999888877777554
No 313
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.31 E-value=5.8e-08 Score=120.57 Aligned_cols=144 Identities=15% Similarity=0.197 Sum_probs=88.5
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcCCCCCC-cEEEECCEecCCCCHHHHhcccEEecCCC---------------------
Q 047171 343 TPTIGLVGSSGSGKSTVISLLERFYDPVK-GNILLDGHKIKKLQLKWLRSQMGLVNQEP--------------------- 400 (1224)
Q Consensus 343 ~~~~~ivG~sGsGKSTl~~ll~~~~~~~~-G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~--------------------- 400 (1224)
+..++|+||+|+|||||++.|+++.++.. |.+.+++.+.... ...++++||..
T Consensus 60 g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~-----~p~i~~~p~g~~~~~~e~~~~~~~~~~~~r~~ 134 (604)
T 3k1j_A 60 KRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDEN-----MPRIKTVPACQGRRIVEKYREKAKSQESVKSS 134 (604)
T ss_dssp TCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTT-----SCEEEEEETTHHHHHHHHHHHHHHHHTCC---
T ss_pred CCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCccccc-----CCcEEEEecchHHHHHHHHHHhhccchhhhhh
Confidence 45899999999999999999999999887 8888887665433 33578887653
Q ss_pred -CCCc-ccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEe
Q 047171 401 -ILFS-TSIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLD 478 (1224)
Q Consensus 401 -~lf~-~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~ililD 478 (1224)
+.|. .++.+|+..++.......+... ......+++..+ +. -......+|+|++|++..++....++.+|+||
T Consensus 135 ~~~~~~~~~~~nl~v~~~~~~~~~~v~~-~~~~~~~L~G~~----~~-~~~~~g~~~~g~~~~i~~g~~~~a~~gvL~LD 208 (604)
T 3k1j_A 135 NMRLKSTVLVPKLLVDNCGRTKAPFIDA-TGAHAGALLGDV----RH-DPFQSGGLGTPAHERVEPGMIHRAHKGVLFID 208 (604)
T ss_dssp --------CCCEEEECCTTCSSCCEEEC-TTCCHHHHHCEE----CC-CCC----CCCCGGGGEECCHHHHTTTSEEEET
T ss_pred cccccccccccceeeccccCCCCCEEEc-CCCCHHhcCceE----Ee-chhhcCCccccccccccCceeeecCCCEEEEe
Confidence 2221 1334444332211000000000 000111222111 11 11222459999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHH
Q 047171 479 EATSALDAESERIVQEALDQ 498 (1224)
Q Consensus 479 E~ts~lD~~~~~~i~~~l~~ 498 (1224)
|.-. |++.....+.+.|++
T Consensus 209 Ei~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 209 EIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp TGGG-SCHHHHHHHHHHHHH
T ss_pred chhh-CCHHHHHHHHHHHHc
Confidence 9988 798888888777764
No 314
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.29 E-value=1e-06 Score=104.78 Aligned_cols=113 Identities=19% Similarity=0.330 Sum_probs=75.9
Q ss_pred ceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcceEEEecCCCCCcccHHHHH
Q 047171 995 IFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIALVSQEPTLFAGTIRQNI 1074 (1224)
Q Consensus 995 vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qdp~LF~gTIreNl 1074 (1224)
.++++++++++| +.|+||+|+|||||++++.+..... -+.+++. +.+
T Consensus 40 ~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~~~~--f~~is~~-----------------------------~~~ 86 (476)
T 2ce7_A 40 KFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEANVP--FFHISGS-----------------------------DFV 86 (476)
T ss_dssp HHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHHTCC--EEEEEGG-----------------------------GTT
T ss_pred HHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHcCCC--eeeCCHH-----------------------------HHH
Confidence 577888888888 9999999999999999999843110 0111110 000
Q ss_pred ccCCCCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeccC----------
Q 047171 1075 VYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEAT---------- 1144 (1224)
Q Consensus 1075 ~~~~~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll~~p~ILlLDEaT---------- 1144 (1224)
. ..+| .|++++|-.+++|....|.||++||+.
T Consensus 87 ~--------------------------------~~~g------~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~ 128 (476)
T 2ce7_A 87 E--------------------------------LFVG------VGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGL 128 (476)
T ss_dssp T--------------------------------CCTT------HHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC-----
T ss_pred H--------------------------------HHhc------ccHHHHHHHHHHHHhcCCCEEEEechhhhhhhccccc
Confidence 0 0011 267889999999999999999999994
Q ss_pred CCCCHHHHHHHHHHHHHh-----cCCCeEEEEccCchhh
Q 047171 1145 SALDSASENLVQEALEKM-----MVGRTCVVVAHRLSTI 1178 (1224)
Q Consensus 1145 SaLD~~te~~I~~~l~~~-----~~~~TvI~IaHrl~ti 1178 (1224)
++.|.+.++.+.+.+..+ ..+..+|..||+.+.+
T Consensus 129 ~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~L 167 (476)
T 2ce7_A 129 GGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDIL 167 (476)
T ss_dssp ----CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGS
T ss_pred CcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhh
Confidence 466777766666666543 1355788889998654
No 315
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.26 E-value=4.6e-08 Score=104.91 Aligned_cols=56 Identities=16% Similarity=0.114 Sum_probs=38.5
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCH--------HHHhcccEEecCC
Q 047171 344 PTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQL--------KWLRSQMGLVNQE 399 (1224)
Q Consensus 344 ~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~--------~~~r~~i~~v~Q~ 399 (1224)
.+++|+||||||||||+++|+|++.|++|+|.++|.++...++ ...+.+++||+|+
T Consensus 28 ~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 28 LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTEAGATSGSRDKGLHGKLKAGVCYSMLD 91 (227)
T ss_dssp HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC------------------CGGGBCSSEEEEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECCEEcccCCccccccchhhHhhcCcEEEEEe
Confidence 3689999999999999999999999999999999998843322 2245689999984
No 316
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.25 E-value=3.5e-07 Score=96.56 Aligned_cols=136 Identities=21% Similarity=0.249 Sum_probs=72.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC-----CCC------CcEEEECCEecC----CCC-HHHHhcccEEecCCCC--C--Cc
Q 047171 345 TIGLVGSSGSGKSTVISLLERFY-----DPV------KGNILLDGHKIK----KLQ-LKWLRSQMGLVNQEPI--L--FS 404 (1224)
Q Consensus 345 ~~~ivG~sGsGKSTl~~ll~~~~-----~~~------~G~i~~~g~~~~----~~~-~~~~r~~i~~v~Q~~~--l--f~ 404 (1224)
+++|+|++|||||||++.+.|.. .|+ .|+|.++|.++. +.+ .+..+.......|++. + |+
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 86 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYD 86 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEEEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEEEEEE
Confidence 68999999999999999999974 243 678999997652 222 2222322222233321 1 11
Q ss_pred ccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhc-ccccc-ccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCC
Q 047171 405 TSIKENILIGKPGASMETVVKAAQAANVHDFIMKL-NDGYE-TKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATS 482 (1224)
Q Consensus 405 ~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l-~~g~~-t~~~~~g~~LSgGq~qriaiARal~~~~~ililDE~ts 482 (1224)
.+-.. +.+++.... +.+... +.+.. -.++.+- .|..-.......||+++.+|+++++| ||
T Consensus 87 ~~~~~---------s~~~~~~~~------~~~~~~~~~~~~i~~v~nK~-Dl~~~~~~~~~~a~~l~~~~~~~~~d--~S 148 (199)
T 2f9l_A 87 IAKHL---------TYENVERWL------KELRDHADSNIVIMLVGNKS-DLRHLRAVPTDEARAFAEKNNLSFIE--TS 148 (199)
T ss_dssp TTCHH---------HHHTHHHHH------HHHHHHSCTTCEEEEEEECT-TCGGGCCSCHHHHHHHHHHTTCEEEE--CC
T ss_pred CcCHH---------HHHHHHHHH------HHHHHhcCCCCeEEEEEECc-ccccccCcCHHHHHHHHHHcCCeEEE--Ee
Confidence 11000 001111100 001110 01110 1122221 12111112345699999999999999 99
Q ss_pred CCCHHHHHHHHHHHHH
Q 047171 483 ALDAESERIVQEALDQ 498 (1224)
Q Consensus 483 ~lD~~~~~~i~~~l~~ 498 (1224)
|+|.+....+.+.+.+
T Consensus 149 al~~~~i~~l~~~l~~ 164 (199)
T 2f9l_A 149 ALDSTNVEEAFKNILT 164 (199)
T ss_dssp TTTCTTHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHH
Confidence 9999887777666644
No 317
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.22 E-value=6.5e-08 Score=100.58 Aligned_cols=71 Identities=15% Similarity=0.152 Sum_probs=53.0
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCCCC-CCcEEE----------ECCEecCCCCHHHHhcccEEecCCCCCCcccHHHH
Q 047171 342 DTPTIGLVGSSGSGKSTVISLLERFYDP-VKGNIL----------LDGHKIKKLQLKWLRSQMGLVNQEPILFSTSIKEN 410 (1224)
Q Consensus 342 ~~~~~~ivG~sGsGKSTl~~ll~~~~~~-~~G~i~----------~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~n 410 (1224)
.+..++|+||||||||||+++|.+++++ ..|.|. ++|.+....+.+.+++. +.|+.+++..++.+|
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ttr~~~~ge~~g~~~~~~~~~~~~~~---~~~~~~l~~~~~~~n 80 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKDEENGKNYYFVSHDQMMQD---ISNNEYLEYGSHEDA 80 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC---CCBTTTBEECCHHHHHHH---HHTTCEEEEEEETTE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeeccCCCCCccccCCCeeEEeCHHHHHHH---HHcCCceEEEEEcCc
Confidence 3568999999999999999999999874 445543 35656555666666653 567888888898888
Q ss_pred HhcCCC
Q 047171 411 ILIGKP 416 (1224)
Q Consensus 411 i~~g~~ 416 (1224)
.+|.+
T Consensus 81 -~yg~~ 85 (180)
T 1kgd_A 81 -MYGTK 85 (180)
T ss_dssp -EEEEE
T ss_pred -ccccc
Confidence 56653
No 318
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.20 E-value=7.9e-07 Score=102.73 Aligned_cols=143 Identities=15% Similarity=0.251 Sum_probs=83.0
Q ss_pred EEEEEcCCCCChHHHHHHHhcccC-----------CCCceEEECCccCCCCCHHHHhcceEEEecCCCC----CcccHHH
Q 047171 1008 TVALVGQSGSGKSTIIGLIERFYD-----------PQSGSVMVDERNIKSYNLRKLRSCIALVSQEPTL----FAGTIRQ 1072 (1224)
Q Consensus 1008 ~vaIVG~SGsGKSTL~~lL~rl~~-----------p~~G~I~idG~di~~~~~~~lR~~i~~V~Qdp~L----F~gTIre 1072 (1224)
+|+|||++|||||||++.|.|... |..|.|.++|.++. +....|++.|.|.- |..|+ +
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~------l~DT~G~i~~lp~~lve~f~~tl-~ 253 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIM------LVDTVGFIRGIPPQIVDAFFVTL-S 253 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEE------EEECCCBCSSCCGGGHHHHHHHH-H
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEE------EEeCCCchhcCCHHHHHHHHHHH-H
Confidence 399999999999999999999765 67799999997652 22346666665532 22232 2
Q ss_pred HHccCC-----CCCCHHH--HHHHHHHHhHHHHHHhc--ccccccccCCCCCCCChHHHHHHHHH----HHH-ccCCCEE
Q 047171 1073 NIVYGK-----EVATEAE--IRKAAVLANAHEFISST--EDGYDTYCGERGVQLSGGQKQRIALA----RAV-LKNPMIL 1138 (1224)
Q Consensus 1073 Nl~~~~-----~~~~dee--i~~al~~a~l~~~I~~l--p~gldt~vge~G~~LSGGQrQRlaLA----RAl-l~~p~IL 1138 (1224)
.+.-.+ -+.++.. ..+..+ ...+.+..+ ++.---.|+.....+|+|++||+.++ +++ ..+|++
T Consensus 254 ~~~~aD~il~VvD~s~~~~~~~~~~~--~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~- 330 (364)
T 2qtf_A 254 EAKYSDALILVIDSTFSENLLIETLQ--SSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDV- 330 (364)
T ss_dssp GGGGSSEEEEEEETTSCHHHHHHHHH--HHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEE-
T ss_pred HHHhCCEEEEEEECCCCcchHHHHHH--HHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcE-
Confidence 222111 0112111 111111 111222221 11001122333445788899988877 666 444555
Q ss_pred EEeccCCCCCHHHHHHHHHHHHHhc
Q 047171 1139 LLDEATSALDSASENLVQEALEKMM 1163 (1224)
Q Consensus 1139 lLDEaTSaLD~~te~~I~~~l~~~~ 1163 (1224)
+|||++|.+.-..+.+.|.+..
T Consensus 331 ---~~~SA~~g~gi~~L~~~I~~~l 352 (364)
T 2qtf_A 331 ---IPISALKRTNLELLRDKIYQLA 352 (364)
T ss_dssp ---EECBTTTTBSHHHHHHHHHHHH
T ss_pred ---EEEECCCCcCHHHHHHHHHHHh
Confidence 8999999998888888887654
No 319
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.20 E-value=5.8e-07 Score=95.66 Aligned_cols=71 Identities=23% Similarity=0.206 Sum_probs=53.0
Q ss_pred eCCcEEEEEcCCCCChHHHHHHHhcccCC-CCceEE----------ECCccCCCCCHHHHhcceEEEecCCCCCcccHHH
Q 047171 1004 EAGKTVALVGQSGSGKSTIIGLIERFYDP-QSGSVM----------VDERNIKSYNLRKLRSCIALVSQEPTLFAGTIRQ 1072 (1224)
Q Consensus 1004 ~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p-~~G~I~----------idG~di~~~~~~~lR~~i~~V~Qdp~LF~gTIre 1072 (1224)
++|+.++|+|||||||||+++.|.+.++| ..+.+. .+|++...++...+++.+ .|+.+++.+++.+
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~~e~~g~~y~~~~~~~f~~~~---~~~~~le~~~~~~ 82 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPETSFDYSISMTTRLPREGEQDGVDYYFRSREVFEQAI---KDGKMLEYAEYVG 82 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTCCCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHH---HTTCEEEEEEETT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCCcEEEEEecccccCcCcccCCceeEEecHHHHHHHH---hcCcEEEEEEEcc
Confidence 58999999999999999999999999976 333332 456666666777776654 5677777777766
Q ss_pred HHccCC
Q 047171 1073 NIVYGK 1078 (1224)
Q Consensus 1073 Nl~~~~ 1078 (1224)
| .||.
T Consensus 83 ~-~yg~ 87 (208)
T 3tau_A 83 N-YYGT 87 (208)
T ss_dssp E-EEEE
T ss_pred c-cCCC
Confidence 6 3553
No 320
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.20 E-value=1.3e-07 Score=103.33 Aligned_cols=52 Identities=27% Similarity=0.470 Sum_probs=35.9
Q ss_pred cEEEEEE-EEECCCCCCccceeceeEEEeC---CcEEEEEcCCCCChHHHHHHHhccc
Q 047171 977 FIELKNV-FFSYPSRPDQMIFKGLTLKIEA---GKTVALVGQSGSGKSTIIGLIERFY 1030 (1224)
Q Consensus 977 ~I~~~~v-sf~Y~~~~~~~vL~~isl~I~~---Ge~vaIVG~SGsGKSTL~~lL~rl~ 1030 (1224)
.++++|+ +|+|. .+.++|+|+||+|++ |++++|+|++||||||+.++|.+.+
T Consensus 17 ~l~~~~~~~~~~~--~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 17 LLETGSLLHSPFD--EEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp -----------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred ceEEcceeeEEec--CcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 5899999 99993 245699999999999 9999999999999999999999865
No 321
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.19 E-value=1e-06 Score=101.82 Aligned_cols=143 Identities=17% Similarity=0.284 Sum_probs=85.4
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcCCC-----------CCCcEEEECCEecCCCCHHHHhcccEEecCCCCC----CcccHH
Q 047171 344 PTIGLVGSSGSGKSTVISLLERFYD-----------PVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPIL----FSTSIK 408 (1224)
Q Consensus 344 ~~~~ivG~sGsGKSTl~~ll~~~~~-----------~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l----f~~ti~ 408 (1224)
..++|+|++|||||||++.|+|... |+.|.|.++|.++. +....|++.|.|.- |..| .
T Consensus 180 ~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~------l~DT~G~i~~lp~~lve~f~~t-l 252 (364)
T 2qtf_A 180 PSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIM------LVDTVGFIRGIPPQIVDAFFVT-L 252 (364)
T ss_dssp CEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEE------EEECCCBCSSCCGGGHHHHHHH-H
T ss_pred cEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEE------EEeCCCchhcCCHHHHHHHHHH-H
Confidence 3699999999999999999999765 67899999997653 22356777665431 2222 2
Q ss_pred HHHhcCC-----CCCCHHH--HHHHHHHhcHHHHHHhcc-ccc-cccccCCCCCCChHHHHHHHHH----HHh-ccCCCE
Q 047171 409 ENILIGK-----PGASMET--VVKAAQAANVHDFIMKLN-DGY-ETKVGQFGVQLSGGQKQRIAIA----RAL-IRDPKI 474 (1224)
Q Consensus 409 ~ni~~g~-----~~~~~~~--~~~~~~~~~~~~~i~~l~-~g~-~t~~~~~g~~LSgGq~qriaiA----Ral-~~~~~i 474 (1224)
+.+.-.. -+.+... ..+.. ....+.+..+. .+. --.|+.+...+|+|++||+.++ +++ ..+|++
T Consensus 253 ~~~~~aD~il~VvD~s~~~~~~~~~~--~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~ 330 (364)
T 2qtf_A 253 SEAKYSDALILVIDSTFSENLLIETL--QSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDV 330 (364)
T ss_dssp HGGGGSSEEEEEEETTSCHHHHHHHH--HHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEE
T ss_pred HHHHhCCEEEEEEECCCCcchHHHHH--HHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcE
Confidence 2222110 0111111 11111 11223333331 111 1234666677898999998887 666 445554
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHH
Q 047171 475 LLLDEATSALDAESERIVQEALDQA 499 (1224)
Q Consensus 475 lilDE~ts~lD~~~~~~i~~~l~~~ 499 (1224)
+|+||+|.+.-..+.+.|.+.
T Consensus 331 ----~~~SA~~g~gi~~L~~~I~~~ 351 (364)
T 2qtf_A 331 ----IPISALKRTNLELLRDKIYQL 351 (364)
T ss_dssp ----EECBTTTTBSHHHHHHHHHHH
T ss_pred ----EEEECCCCcCHHHHHHHHHHH
Confidence 899999998877777776553
No 322
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.18 E-value=8e-08 Score=101.72 Aligned_cols=52 Identities=27% Similarity=0.378 Sum_probs=46.2
Q ss_pred ccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceE--EECCccCC
Q 047171 993 QMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSV--MVDERNIK 1045 (1224)
Q Consensus 993 ~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I--~idG~di~ 1045 (1224)
..+.+..++..++|+.++|+|+|||||||++++|.+.+. ..|.+ ++||.++.
T Consensus 12 ~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d~d~~~ 65 (200)
T 3uie_A 12 VEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILDGDNVR 65 (200)
T ss_dssp CCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEHHHHT
T ss_pred cCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEecCchhh
Confidence 346788889999999999999999999999999999987 78988 99987664
No 323
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=98.17 E-value=2.2e-06 Score=102.48 Aligned_cols=168 Identities=13% Similarity=0.112 Sum_probs=99.1
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCc-EEEECCEecCCCCHHHHhccc-EEecCCCCCCcccHHHHHhcCCCC
Q 047171 340 RPDTPTIGLVGSSGSGKSTVISLLERFYDPVKG-NILLDGHKIKKLQLKWLRSQM-GLVNQEPILFSTSIKENILIGKPG 417 (1224)
Q Consensus 340 ~~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G-~i~~~g~~~~~~~~~~~r~~i-~~v~Q~~~lf~~ti~~ni~~g~~~ 417 (1224)
-+++..+.|.|++|+|||||+..+++...+..| .|.+-+. +.+...+++++ +....- . .+.+.-|.
T Consensus 200 l~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~---E~s~~~l~~r~~~~~~~~------~-~~~l~~g~-- 267 (454)
T 2r6a_A 200 FQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSL---EMSAQQLVMRMLCAEGNI------N-AQNLRTGK-- 267 (454)
T ss_dssp BCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEES---SSCHHHHHHHHHHHHHTC------C-HHHHHTSC--
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC---CCCHHHHHHHHHHHHcCC------C-HHHHhcCC--
Confidence 346779999999999999999999887766545 5555332 23444444332 111110 0 12233332
Q ss_pred CCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhc--cCCCEEEEeCCCCCCCHH--------
Q 047171 418 ASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALI--RDPKILLLDEATSALDAE-------- 487 (1224)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~--~~~~ililDE~ts~lD~~-------- 487 (1224)
.+.++..+..+. .+.+...| -.+.+ ...+|++|.+ +.||.+. .+|+++++|+++.-.+..
T Consensus 268 l~~~~~~~~~~a---~~~l~~~~----l~i~d-~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~~~~~~~~~~~ 337 (454)
T 2r6a_A 268 LTPEDWGKLTMA---MGSLSNAG----IYIDD-TPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQGSGRSKENRQQ 337 (454)
T ss_dssp CCHHHHHHHHHH---HHHHHSSC----EEEEC-CTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCCSCC----CHH
T ss_pred CCHHHHHHHHHH---HHHHhcCC----EEEEC-CCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhccCCCCCCCHHH
Confidence 344443322221 12232222 12222 3578999986 5677776 589999999999877431
Q ss_pred HHHHHHHHHHHHc--CCCeEEEEeC---------C--cc--------hhhc-cCEEEEEeCceE
Q 047171 488 SERIVQEALDQAS--QGRTMIIIAH---------R--LS--------TIRK-ADLIGVLQSGRV 529 (1224)
Q Consensus 488 ~~~~i~~~l~~~~--~~~t~i~i~H---------~--l~--------~~~~-ad~i~vl~~G~i 529 (1224)
.-..+.+.|+.+. .|.++|+++| + +. .+.+ ||.|++|..++.
T Consensus 338 ~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~ 401 (454)
T 2r6a_A 338 EVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDDY 401 (454)
T ss_dssp HHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEETTC
T ss_pred HHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEecccc
Confidence 1234555555442 3889999999 1 32 3444 999999987654
No 324
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.15 E-value=3.8e-07 Score=94.76 Aligned_cols=67 Identities=24% Similarity=0.232 Sum_probs=48.8
Q ss_pred eceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCc--cCCCCCH----HHHhcceEEEecCCC
Q 047171 997 KGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDER--NIKSYNL----RKLRSCIALVSQEPT 1064 (1224)
Q Consensus 997 ~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~--di~~~~~----~~lR~~i~~V~Qdp~ 1064 (1224)
+++++++.+| .++|+|+||||||||+.+|.++..+..|...-.+. ++-.... ...+..|.++.|+|.
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~ 90 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGLSAKAMRASRISDLIFAGSKNEPPAKYAEVAIYFNNED 90 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCTGGGTCSSGGGGBCCCC----CCSCEEEEEEEECTT
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCcccccccccchheeecccccCCCCceEEEEEEEeCCC
Confidence 6889999999 99999999999999999999988877765433331 1111110 023467999999863
No 325
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=98.14 E-value=6.9e-07 Score=94.97 Aligned_cols=101 Identities=20% Similarity=0.231 Sum_probs=59.3
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcccEEecCCCCCCcccHHHHHhcCCCCCCHH
Q 047171 342 DTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFSTSIKENILIGKPGASME 421 (1224)
Q Consensus 342 ~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~g~~~~~~~ 421 (1224)
++..++|+|++||||||+++.|.+.++ .+.+++||+.++++ +|+.++.+.....
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~~~-----------------------~~~~i~~D~~~~~~---~~~~~~~~~~~~~ 73 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKHLP-----------------------NCSVISQDDFFKPE---SEIETDKNGFLQY 73 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTTST-----------------------TEEEEEGGGGBCCG---GGSCBCTTSCBCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcC-----------------------CcEEEeCCccccCH---hHhhccccCCChh
Confidence 455899999999999999999999875 37899999988876 5665544322111
Q ss_pred HHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCC
Q 047171 422 TVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATS 482 (1224)
Q Consensus 422 ~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~ililDE~ts 482 (1224)
++..+.....+.+++..+.++. + . ..++.|.++ ..+++++|+|=|..
T Consensus 74 ~~~~~~~~~~l~~~i~~~l~~~---~--~-~~~~~~~~~--------~~~~~~vi~eg~~~ 120 (207)
T 2qt1_A 74 DVLEALNMEKMMSAISCWMESA---R--H-SVVSTDQES--------AEEIPILIIEGFLL 120 (207)
T ss_dssp SSGGGBCHHHHHHHHHHHHHHH---T--T-SSCCC-------------CCCCEEEEECTTC
T ss_pred HHHHHhHHHHHHHHHHHHHhCC---C--C-CCcCCCeee--------cCCCCEEEEeehHH
Confidence 1222222223333443332211 1 0 134555554 45678889887653
No 326
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.13 E-value=7e-07 Score=101.20 Aligned_cols=70 Identities=17% Similarity=0.245 Sum_probs=57.5
Q ss_pred ceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCH----HHH-----hcceEEE-ecCCC
Q 047171 995 IFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNL----RKL-----RSCIALV-SQEPT 1064 (1224)
Q Consensus 995 vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~----~~l-----R~~i~~V-~Qdp~ 1064 (1224)
+++++||++++|+.++|+|++|+||||++..|.+.+.+..|+|.+.+.|+..... ..| +.++.++ +|.+.
T Consensus 94 ~~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~~ 173 (320)
T 1zu4_A 94 KKYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKLN 173 (320)
T ss_dssp --CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSSTT
T ss_pred cccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCCC
Confidence 3468889999999999999999999999999999999999999999988865432 344 6678999 66543
No 327
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.13 E-value=7.3e-07 Score=94.18 Aligned_cols=45 Identities=22% Similarity=0.169 Sum_probs=25.1
Q ss_pred ECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhccc
Q 047171 986 SYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFY 1030 (1224)
Q Consensus 986 ~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~ 1030 (1224)
+|++++..++++|+||++++|+.++|+|++||||||+.+.|.+.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 5 HHHSSGVDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp -------------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCCCCCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 466666778999999999999999999999999999999999876
No 328
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.13 E-value=4.1e-07 Score=96.21 Aligned_cols=60 Identities=20% Similarity=0.173 Sum_probs=43.8
Q ss_pred eEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcceEEEecCCC
Q 047171 1000 TLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIALVSQEPT 1064 (1224)
Q Consensus 1000 sl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qdp~ 1064 (1224)
.++.++|+.++|+|++||||||++++|.+.+ |.+.+||.++..- ....+...++++|++.
T Consensus 23 ~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~d~~~~~-~~~~~~~~g~~~~~~~ 82 (200)
T 4eun_A 23 MMTGEPTRHVVVMGVSGSGKTTIAHGVADET----GLEFAEADAFHSP-ENIATMQRGIPLTDED 82 (200)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHH----CCEEEEGGGGSCH-HHHHHHHTTCCCCHHH
T ss_pred hhcCCCCcEEEEECCCCCCHHHHHHHHHHhh----CCeEEcccccccH-HHHHHHhcCCCCCCcc
Confidence 4667899999999999999999999999987 8999999887531 1122335678888753
No 329
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=98.12 E-value=6.7e-07 Score=111.78 Aligned_cols=130 Identities=19% Similarity=0.218 Sum_probs=94.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCCCC--CCcEEEECCEecCCCCHHHHhcccEEecCCCCCCcccHHHHHhcCCCCCC
Q 047171 342 DTPTIGLVGSSGSGKSTVISLLERFYDP--VKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFSTSIKENILIGKPGAS 419 (1224)
Q Consensus 342 ~~~~~~ivG~sGsGKSTl~~ll~~~~~~--~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~g~~~~~ 419 (1224)
.+..++|+|++|+|||||++.|++...+ ..|+| .+|.++.++...+.++.+++.+|.+.++..++..||.- .|...
T Consensus 8 ~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliD-TpG~~ 85 (665)
T 2dy1_A 8 MIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLD-APGYG 85 (665)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEE-CCCSG
T ss_pred CCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEe-CCCcc
Confidence 3458999999999999999999987665 77988 78989999999888999999999988877766666642 11110
Q ss_pred HHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 047171 420 METVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQA 499 (1224)
Q Consensus 420 ~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~ 499 (1224)
+.. . .... ..-..+..++++| |+.++|+.++..+..+..
T Consensus 86 --~f~--------------------------------~--~~~~--~l~~ad~~ilVvD-~~~g~~~qt~~~~~~~~~-- 124 (665)
T 2dy1_A 86 --DFV--------------------------------G--EIRG--ALEAADAALVAVS-AEAGVQVGTERAWTVAER-- 124 (665)
T ss_dssp --GGH--------------------------------H--HHHH--HHHHCSEEEEEEE-TTTCSCHHHHHHHHHHHH--
T ss_pred --chH--------------------------------H--HHHH--HHhhcCcEEEEEc-CCcccchhHHHHHHHHHH--
Confidence 000 0 0011 1112466788888 999999998866654432
Q ss_pred cCCCeEEEEeCCcchh
Q 047171 500 SQGRTMIIIAHRLSTI 515 (1224)
Q Consensus 500 ~~~~t~i~i~H~l~~~ 515 (1224)
.+.++|++.|+++..
T Consensus 125 -~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 125 -LGLPRMVVVTKLDKG 139 (665)
T ss_dssp -TTCCEEEEEECGGGC
T ss_pred -ccCCEEEEecCCchh
Confidence 478899999988764
No 330
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=98.12 E-value=8.6e-07 Score=102.84 Aligned_cols=161 Identities=19% Similarity=0.144 Sum_probs=83.3
Q ss_pred cceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhc--ccCCCCceEEECCccCCCCCHHHHhcceEEEecCCCCCcccHH
Q 047171 994 MIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIER--FYDPQSGSVMVDERNIKSYNLRKLRSCIALVSQEPTLFAGTIR 1071 (1224)
Q Consensus 994 ~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~r--l~~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qdp~LF~gTIr 1071 (1224)
.+|++++++++ .|+|||++|||||||++.|.| +.++.+|.+.-.+..+.-.+...-....+..++.+.
T Consensus 25 ~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~------- 94 (360)
T 3t34_A 25 SALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPR------- 94 (360)
T ss_dssp CCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTT-------
T ss_pred cccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCC-------
Confidence 47899999998 999999999999999999999 777777776544432211000000112222222221
Q ss_pred HHHccCCCCCCHHHHHHHHHHHhHHHHHHh---------------cccc-----ccccc-C--CCCCCCChHHHHHHHHH
Q 047171 1072 QNIVYGKEVATEAEIRKAAVLANAHEFISS---------------TEDG-----YDTYC-G--ERGVQLSGGQKQRIALA 1128 (1224)
Q Consensus 1072 eNl~~~~~~~~deei~~al~~a~l~~~I~~---------------lp~g-----ldt~v-g--e~G~~LSGGQrQRlaLA 1128 (1224)
....+.+++.+....... .+.. -|.+ .||+= . ..+.+.+++++|+..++
T Consensus 95 ------~~~~~~~~v~~~i~~~~~--~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~ 166 (360)
T 3t34_A 95 ------KKFTDFAAVRKEIQDETD--RETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMV 166 (360)
T ss_dssp ------CCBSCHHHHHHHHHHHHH--HTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHH
T ss_pred ------cccCCHHHHHHHHHHHHH--HhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHH
Confidence 111122233222211100 0000 0000 12221 0 11234678899999999
Q ss_pred HHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CC-CeEEEEcc
Q 047171 1129 RAVLKNPMILLLDEATSALDSASENLVQEALEKMM-VG-RTCVVVAH 1173 (1224)
Q Consensus 1129 RAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~-~TvI~IaH 1173 (1224)
++.+++|+++||.-..+..|..+. ...+.++... .+ +|++++++
T Consensus 167 ~~~i~~~d~iilvv~~~~~~~~~~-~~~~l~~~~~~~~~~~i~V~nK 212 (360)
T 3t34_A 167 RSYIEKPNCIILAISPANQDLATS-DAIKISREVDPSGDRTFGVLTK 212 (360)
T ss_dssp HHHHHSSSEEEEEEEETTSCGGGC-HHHHHHHHSCTTCTTEEEEEEC
T ss_pred HHHhhcCCeEEEEeecccCCcCCH-HHHHHHHHhcccCCCEEEEEeC
Confidence 999999998777744444565443 2334444443 24 46666654
No 331
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=98.12 E-value=1.5e-07 Score=114.12 Aligned_cols=70 Identities=26% Similarity=0.320 Sum_probs=54.2
Q ss_pred EEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCc-eE-EECCccCCC-------CCH---HHHhcceEEEecCCCCCccc
Q 047171 1002 KIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSG-SV-MVDERNIKS-------YNL---RKLRSCIALVSQEPTLFAGT 1069 (1224)
Q Consensus 1002 ~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G-~I-~idG~di~~-------~~~---~~lR~~i~~V~Qdp~LF~gT 1069 (1224)
.+++|+.++|+|+||||||||+++|.+.+.|.+| +| ++||.++.+ ++. ..+++++++++|+. +
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~~~l~~~l~f~~~~r~~~~r~i~~v~q~l-----~ 439 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRRHLSSELGFSKAHRDVNVRRIGFVASEI-----T 439 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHHHHTTSSCCCSHHHHHHHHHHHHHHHHHH-----H
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHHHhhccccCCCHHHHHHHHHHHHHHHHHH-----H
Confidence 5789999999999999999999999999999887 78 499977642 222 23456789998873 4
Q ss_pred HHHHHcc
Q 047171 1070 IRQNIVY 1076 (1224)
Q Consensus 1070 IreNl~~ 1076 (1224)
..+|+.+
T Consensus 440 ~~~~ivi 446 (552)
T 3cr8_A 440 KNRGIAI 446 (552)
T ss_dssp HTTCEEE
T ss_pred hcCCEEE
Confidence 4455544
No 332
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.06 E-value=1.1e-06 Score=93.28 Aligned_cols=62 Identities=16% Similarity=0.123 Sum_probs=40.9
Q ss_pred EEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcceEEEecCCCC
Q 047171 1001 LKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIALVSQEPTL 1065 (1224)
Q Consensus 1001 l~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qdp~L 1065 (1224)
++|++|+.++|+|+|||||||++++|.+++.|..| +.+ +...+... ...+..+++++|++..
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~-~~i-~~~~~~~~-~~~~~~~~~~~~~~~~ 62 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYK-YSI-SMTTRQMR-EGEVDGVDYFFKTRDA 62 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEE-CCC-CEECSCCC-TTCCBTTTBEECCHHH
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCCCeE-Eec-ccccCCCC-CCccCCCceEEcCHHH
Confidence 46889999999999999999999999999977655 222 11222211 1123347788887643
No 333
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=98.02 E-value=1.3e-07 Score=113.10 Aligned_cols=139 Identities=17% Similarity=0.190 Sum_probs=95.5
Q ss_pred EEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcceEE
Q 047171 979 ELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIAL 1058 (1224)
Q Consensus 979 ~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~~ 1058 (1224)
+++++...|. ++.+++++++++++| +.|+||+|+|||||++++.+... .|.+.++|.++.+......++++..
T Consensus 42 ~l~~lv~~l~---~~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~--~~~i~i~g~~~~~~~~g~~~~~v~~ 114 (499)
T 2dhr_A 42 ELKEIVEFLK---NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRD 114 (499)
T ss_dssp HHHHHHHHHH---CGGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT--CCEEEEEGGGGTSSCTTHHHHHHHH
T ss_pred HHHHHHHHhh---chhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC--CCEEEEehhHHHHhhhhhHHHHHHH
Confidence 3444444442 234789999999999 99999999999999999999875 7899999998876655566677888
Q ss_pred EecCCC-CCc-ccHHHHHcc-CCCC-----CCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHH
Q 047171 1059 VSQEPT-LFA-GTIRQNIVY-GKEV-----ATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARA 1130 (1224)
Q Consensus 1059 V~Qdp~-LF~-gTIreNl~~-~~~~-----~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARA 1130 (1224)
++|+.. .+. -.+-|+|+. +... ...++..+.+ ..++. .|||||+|+..+++|
T Consensus 115 lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l-----~~LL~---------------~Ldg~~~~~~viviA 174 (499)
T 2dhr_A 115 LFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTL-----NQLLV---------------EMDGFEKDTAIVVMA 174 (499)
T ss_dssp HTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHH-----HHHHH---------------HGGGCCSSCCCEEEE
T ss_pred HHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHH-----HHHHH---------------HhcccccCccEEEEE
Confidence 888874 232 355677743 2211 0122222221 11221 267888888888888
Q ss_pred HccCCCEEEEeccCCC
Q 047171 1131 VLKNPMILLLDEATSA 1146 (1224)
Q Consensus 1131 ll~~p~ILlLDEaTSa 1146 (1224)
...+|++ ||||.-.
T Consensus 175 atn~p~~--LD~aLlr 188 (499)
T 2dhr_A 175 ATNRPDI--LDPALLR 188 (499)
T ss_dssp CCSCGGG--SCTTTSS
T ss_pred ecCChhh--cCccccc
Confidence 8888887 8888753
No 334
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=97.96 E-value=5.7e-06 Score=105.05 Aligned_cols=68 Identities=16% Similarity=0.140 Sum_probs=53.1
Q ss_pred CCCChHHHHHHHHHHHHccCCCEEEEeccCC-CCCHHHHHHHHHHHHHhcCC-CeEEE-EccCchhhhh-cC
Q 047171 1115 VQLSGGQKQRIALARAVLKNPMILLLDEATS-ALDSASENLVQEALEKMMVG-RTCVV-VAHRLSTIQK-AD 1182 (1224)
Q Consensus 1115 ~~LSGGQrQRlaLARAll~~p~ILlLDEaTS-aLD~~te~~I~~~l~~~~~~-~TvI~-IaHrl~ti~~-aD 1182 (1224)
.-+|+|+.+|..++++++.+++++|+|||.. ++|.+....+.+.+.+...+ +++++ .||..+.+.. ++
T Consensus 189 ~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~~l~~~~~ 260 (773)
T 2xau_A 189 KYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQRYFN 260 (773)
T ss_dssp EEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCHHHHHHTT
T ss_pred EEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHHHHHHHhc
Confidence 3578999999999999999999999999996 89988766666666665544 45555 4798776654 44
No 335
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.95 E-value=1.2e-06 Score=92.45 Aligned_cols=56 Identities=20% Similarity=0.173 Sum_probs=42.3
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcccEEecCCCC
Q 047171 341 PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPI 401 (1224)
Q Consensus 341 ~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~ 401 (1224)
++++.++|+|+|||||||++++|.+.+ |.+.++|.++... ....+..+|+++|++.
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~d~~~~~-~~~~~~~~g~~~~~~~ 82 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADET----GLEFAEADAFHSP-ENIATMQRGIPLTDED 82 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHH----CCEEEEGGGGSCH-HHHHHHHTTCCCCHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhh----CCeEEcccccccH-HHHHHHhcCCCCCCcc
Confidence 356799999999999999999999987 8999999776421 1122235788888653
No 336
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=97.92 E-value=8e-06 Score=94.50 Aligned_cols=62 Identities=18% Similarity=0.147 Sum_probs=49.7
Q ss_pred CCCChHHHHHHHHHHHHccCCCEEEEe-ccCCCCCHHHHHHHHHHHHHhcCCCeEEEEc--cCchh
Q 047171 1115 VQLSGGQKQRIALARAVLKNPMILLLD-EATSALDSASENLVQEALEKMMVGRTCVVVA--HRLST 1177 (1224)
Q Consensus 1115 ~~LSGGQrQRlaLARAll~~p~ILlLD-EaTSaLD~~te~~I~~~l~~~~~~~TvI~Ia--Hrl~t 1177 (1224)
..+|+|++|++. +.+...++-++++| ++++++|.+....+.+.+.+...++.+|+|. |++..
T Consensus 230 ~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~~ 294 (357)
T 2e87_A 230 SERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVAD 294 (357)
T ss_dssp TTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTCC
T ss_pred hhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccCC
Confidence 358999999886 66656677789999 9999999998888877777766678888888 77743
No 337
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.91 E-value=1.5e-05 Score=94.79 Aligned_cols=61 Identities=21% Similarity=0.327 Sum_probs=43.8
Q ss_pred hHHHHHHHHHHHhccCCCEEEEeCCC----------CCCCHHHHHHHHHHHHHH-----cCCCeEEEEeCCcchhh
Q 047171 456 GGQKQRIAIARALIRDPKILLLDEAT----------SALDAESERIVQEALDQA-----SQGRTMIIIAHRLSTIR 516 (1224)
Q Consensus 456 gGq~qriaiARal~~~~~ililDE~t----------s~lD~~~~~~i~~~l~~~-----~~~~t~i~i~H~l~~~~ 516 (1224)
|++++|-.+++|....|.||++||+. ++.|.+.++.+.+.+..+ ..+..+|..||+.+.+.
T Consensus 93 ~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld 168 (476)
T 2ce7_A 93 GAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILD 168 (476)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSC
T ss_pred cHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhc
Confidence 78899999999999999999999993 356666666555555443 23568888999986553
No 338
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=97.90 E-value=1.4e-06 Score=98.57 Aligned_cols=55 Identities=16% Similarity=0.213 Sum_probs=49.9
Q ss_pred cccEEEEEEEEECCCCCCcccee--------------ceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccC
Q 047171 975 KGFIELKNVFFSYPSRPDQMIFK--------------GLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYD 1031 (1224)
Q Consensus 975 ~g~I~~~~vsf~Y~~~~~~~vL~--------------~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~ 1031 (1224)
++.++|+||+|.||. ++.+|+ |+++.|.+||+++|+|++|+|||||++.|.|+..
T Consensus 131 ~~ri~Fe~ltp~yP~--er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~ 199 (422)
T 3ice_A 131 RNKILFENLTPLHAN--SRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA 199 (422)
T ss_dssp TTSCCTTTSCEESCC--SBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHH
T ss_pred cCCceeccccccCCC--CccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHh
Confidence 578999999999985 356888 9999999999999999999999999999999863
No 339
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.90 E-value=7.5e-06 Score=93.58 Aligned_cols=59 Identities=17% Similarity=0.183 Sum_probs=45.0
Q ss_pred EEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceE-EECCccCCCCCHHHHhcceEEEecCC
Q 047171 1002 KIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSV-MVDERNIKSYNLRKLRSCIALVSQEP 1063 (1224)
Q Consensus 1002 ~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I-~idG~di~~~~~~~lR~~i~~V~Qdp 1063 (1224)
-+++|+.+.|.||+|||||||+..+.+...+..|.+ +||+.+..+ ..+.+++++.+|+.
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~---~~ra~rlgv~~~~l 116 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALD---PVYAKNLGVDLKSL 116 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCC---HHHHHHHTCCGGGC
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccc---hHHHHHcCCchhhh
Confidence 589999999999999999999999999887777765 677654322 22455677766553
No 340
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.89 E-value=3.8e-06 Score=89.07 Aligned_cols=69 Identities=20% Similarity=0.197 Sum_probs=45.3
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhh---hhcCEEEEEe
Q 047171 1117 LSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLSTI---QKADNIVVIK 1188 (1224)
Q Consensus 1117 LSGGQrQRlaLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti---~~aD~I~vl~ 1188 (1224)
.+.|+.+|..+++.++.+|+.+-.+ ++.+++...+.+.+.+... .+.++|+-+|.+... ..||.+++++
T Consensus 60 ~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~-~~~~vv~~~~~l~e~~~~~~~d~vi~l~ 131 (206)
T 1jjv_A 60 TEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ-TAPYTLFVVPLLIENKLTALCDRILVVD 131 (206)
T ss_dssp ------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC-CSSEEEEECTTTTTTTCGGGCSEEEEEE
T ss_pred ccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc-CCCEEEEEechhhhcCcHhhCCEEEEEE
Confidence 3678999999999999888754433 3456677666676666543 356788888877654 5599999986
No 341
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.87 E-value=5e-06 Score=88.17 Aligned_cols=69 Identities=14% Similarity=0.136 Sum_probs=42.6
Q ss_pred CChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCCcchh---hccCEEEEEe
Q 047171 454 LSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQASQGRTMIIIAHRLSTI---RKADLIGVLQ 525 (1224)
Q Consensus 454 LSgGq~qriaiARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~i~H~l~~~---~~ad~i~vl~ 525 (1224)
.+.|+.+|..+++.+..+|+.+-.+ .+.++|...+.+.+.+... .+.++|+-+|.+.+. +.||.+++++
T Consensus 60 ~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~-~~~~vv~~~~~l~e~~~~~~~d~vi~l~ 131 (206)
T 1jjv_A 60 TEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ-TAPYTLFVVPLLIENKLTALCDRILVVD 131 (206)
T ss_dssp ------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC-CSSEEEEECTTTTTTTCGGGCSEEEEEE
T ss_pred ccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc-CCCEEEEEechhhhcCcHhhCCEEEEEE
Confidence 3688999999999988888654333 2344565555555555433 356888888887664 4599998885
No 342
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=97.86 E-value=3.2e-05 Score=89.46 Aligned_cols=62 Identities=13% Similarity=0.108 Sum_probs=48.0
Q ss_pred CCCCCChHHHHHHHHHHHhccCCCEEEEe-CCCCCCCHHHHHHHHHHHHHHcCCCeEEEEe--CCc
Q 047171 450 FGVQLSGGQKQRIAIARALIRDPKILLLD-EATSALDAESERIVQEALDQASQGRTMIIIA--HRL 512 (1224)
Q Consensus 450 ~g~~LSgGq~qriaiARal~~~~~ililD-E~ts~lD~~~~~~i~~~l~~~~~~~t~i~i~--H~l 512 (1224)
....+|+|++|++. +.+...++-++++| ++++++|.+....+.+.+.....++.+|+|. |++
T Consensus 228 ~~~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl 292 (357)
T 2e87_A 228 PISERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDV 292 (357)
T ss_dssp CSTTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTT
T ss_pred chhhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECccc
Confidence 34568999999887 66666788899999 9999999988766666666554478888888 554
No 343
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.84 E-value=9.8e-07 Score=95.51 Aligned_cols=64 Identities=20% Similarity=0.226 Sum_probs=49.6
Q ss_pred eEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCC------CHHH----HhcceEEEecCCCCCc
Q 047171 1000 TLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSY------NLRK----LRSCIALVSQEPTLFA 1067 (1224)
Q Consensus 1000 sl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~------~~~~----lR~~i~~V~Qdp~LF~ 1067 (1224)
+.+.++|+.++|+|++||||||++++|.++ .|+|.++|.|.... .... .++.+++++|++.++.
T Consensus 14 ~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~ 87 (230)
T 2vp4_A 14 YAEGTQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLLTEPVEKWRNVNGVNLLELMYKDPKKWAMPFQSYVTLT 87 (230)
T ss_dssp BTTTCCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEECCTHHHHTCBTTBCHHHHHHHSHHHHHHHHHHHHHHH
T ss_pred cCCCCCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEEecCHHHhhcccCCChHHHHHhChHhhhhhhHHHHHHH
Confidence 335578999999999999999999999998 78999999876421 1211 2467889999876654
No 344
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.81 E-value=6.2e-05 Score=88.04 Aligned_cols=161 Identities=18% Similarity=0.186 Sum_probs=94.2
Q ss_pred EEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHH-HhcceEE
Q 047171 980 LKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRK-LRSCIAL 1058 (1224)
Q Consensus 980 ~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~-lR~~i~~ 1058 (1224)
.++++..|... . ++++|+ +|+.++++|++||||||++..|.+.+.+..|+|.+.+.|+......+ ++..
T Consensus 79 ~~~L~~~~~~~---~--~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~--- 148 (425)
T 2ffh_A 79 YEALKEALGGE---A--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLL--- 148 (425)
T ss_dssp HHHHHHHTTSS---C--CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHH---
T ss_pred HHHHHHHhCCC---c--ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHh---
Confidence 34455556422 1 567777 89999999999999999999999999999999999888876533322 2110
Q ss_pred EecCCCCCcccHHHHHccC--CCCCCHHHHHHHHHHHhHHHHHHhc-ccccccccCCCCCCCC---hHHHHHHHHHHHHc
Q 047171 1059 VSQEPTLFAGTIRQNIVYG--KEVATEAEIRKAAVLANAHEFISST-EDGYDTYCGERGVQLS---GGQKQRIALARAVL 1132 (1224)
Q Consensus 1059 V~Qdp~LF~gTIreNl~~~--~~~~~deei~~al~~a~l~~~I~~l-p~gldt~vge~G~~LS---GGQrQRlaLARAll 1132 (1224)
.-+.|+.+. .+..+..++. .+.+..+ ..++|..+-+.+..++ .-..+...+++++.
T Consensus 149 ----------~~~~gv~v~~~~~~~~p~~i~--------~~~l~~~~~~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~ 210 (425)
T 2ffh_A 149 ----------GEKVGVPVLEVMDGESPESIR--------RRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLG 210 (425)
T ss_dssp ----------HHHHTCCEEECCTTCCHHHHH--------HHHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHC
T ss_pred ----------cccCCccEEecCCCCCHHHHH--------HHHHHHHHHCCCCEEEEcCCCcccccHHHHHHHHHhhhccC
Confidence 001233211 1112333331 1222222 2467765554433333 34567778888886
Q ss_pred cCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEcc
Q 047171 1133 KNPMILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAH 1173 (1224)
Q Consensus 1133 ~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaH 1173 (1224)
-++-+|++| ++++.|.... + +.+.+. -+.+-+++||
T Consensus 211 pd~vlLVvD-a~tgq~av~~--a-~~f~~~-l~i~GVIlTK 246 (425)
T 2ffh_A 211 PDEVLLVLD-AMTGQEALSV--A-RAFDEK-VGVTGLVLTK 246 (425)
T ss_dssp CSEEEEEEE-GGGTTHHHHH--H-HHHHHH-TCCCEEEEES
T ss_pred CceEEEEEe-ccchHHHHHH--H-HHHHhc-CCceEEEEeC
Confidence 666677788 5566554422 2 233322 2456677775
No 345
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.77 E-value=1.1e-05 Score=92.08 Aligned_cols=28 Identities=25% Similarity=0.357 Sum_probs=25.5
Q ss_pred EEeCCcEEEEEcCCCCChHHHHHHHhcc
Q 047171 1002 KIEAGKTVALVGQSGSGKSTIIGLIERF 1029 (1224)
Q Consensus 1002 ~I~~Ge~vaIVG~SGsGKSTL~~lL~rl 1029 (1224)
-+++|+.+.|.||+||||||++..+...
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~ 130 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVN 130 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHH
Confidence 5899999999999999999999887764
No 346
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=97.77 E-value=1.6e-06 Score=105.10 Aligned_cols=68 Identities=26% Similarity=0.336 Sum_probs=50.1
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCCCCCCc-EEE-ECCEecCC-------CCH---HHHhcccEEecCCCCCCcccHHH
Q 047171 342 DTPTIGLVGSSGSGKSTVISLLERFYDPVKG-NIL-LDGHKIKK-------LQL---KWLRSQMGLVNQEPILFSTSIKE 409 (1224)
Q Consensus 342 ~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G-~i~-~~g~~~~~-------~~~---~~~r~~i~~v~Q~~~lf~~ti~~ 409 (1224)
++..++|+|+||||||||+++|+|.+.|++| +|. +||.++.. ++. ...++.+++|+|+. +..+
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~~~l~~~l~f~~~~r~~~~r~i~~v~q~l-----~~~~ 442 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRRHLSSELGFSKAHRDVNVRRIGFVASEI-----TKNR 442 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHHHHTTSSCCCSHHHHHHHHHHHHHHHHHH-----HHTT
T ss_pred cceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHHHhhccccCCCHHHHHHHHHHHHHHHHHH-----HhcC
Confidence 4568999999999999999999999999987 785 89977642 222 22345688888862 4455
Q ss_pred HHhcC
Q 047171 410 NILIG 414 (1224)
Q Consensus 410 ni~~g 414 (1224)
|+.+.
T Consensus 443 ~ivi~ 447 (552)
T 3cr8_A 443 GIAIC 447 (552)
T ss_dssp CEEEE
T ss_pred CEEEE
Confidence 65543
No 347
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.75 E-value=4e-05 Score=89.74 Aligned_cols=40 Identities=30% Similarity=0.429 Sum_probs=35.1
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccC
Q 047171 1005 AGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNI 1044 (1224)
Q Consensus 1005 ~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di 1044 (1224)
++..++++|++||||||++..|.+.+.+..++|.+-+.|+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~ 135 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADV 135 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCc
Confidence 4678999999999999999999999998888888766654
No 348
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.75 E-value=8.3e-07 Score=102.52 Aligned_cols=126 Identities=15% Similarity=0.122 Sum_probs=76.3
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcccEEecCCCCCCcccHHHHHhcCCC---CC
Q 047171 342 DTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFSTSIKENILIGKP---GA 418 (1224)
Q Consensus 342 ~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~g~~---~~ 418 (1224)
++..++|+||+|||||||+++|+|.+ +|++...+ . +.+.++..+|+++|...++ .|++..... ..
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~~l~~~~---~g~~~~~~--~---~~~~~~~~lg~~~q~~~~l----~dd~~~~~~~~r~l 235 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAAALLELC---GGKALNVN--L---PLDRLNFELGVAIDQFLVV----FEDVKGTGGESRDL 235 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHHH---CCEEECCS--S---CTTTHHHHHGGGTTCSCEE----ETTCCCSTTTTTTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhc---CCcEEEEe--c---cchhHHHHHHHhcchhHHH----HHHHHHHHHHHhhc
Confidence 45699999999999999999999864 67775511 1 1122233588899987542 233332221 00
Q ss_pred -CHHHHHHHHHHhcHHHHHHhc-cccccc-------------cccCCCCCCChHHHHHHHHHHHhccCCCEEE-EeCCCC
Q 047171 419 -SMETVVKAAQAANVHDFIMKL-NDGYET-------------KVGQFGVQLSGGQKQRIAIARALIRDPKILL-LDEATS 482 (1224)
Q Consensus 419 -~~~~~~~~~~~~~~~~~i~~l-~~g~~t-------------~~~~~g~~LSgGq~qriaiARal~~~~~ili-lDE~ts 482 (1224)
....+. ....+.+.+... +-..+| .+..+...+++|++||++.+.+++.+|++++ ||+|+.
T Consensus 236 ~~~~~~~---~~~~l~~~ldG~v~v~~~tn~~~~l~alf~pg~ld~~~~~l~~~~~~rl~~~~~l~~~pDLliyLd~~~~ 312 (377)
T 1svm_A 236 PSGQGIN---NLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMNEYSVPKTLQARFVKQIDFRPKDYLKHCLERSEF 312 (377)
T ss_dssp CCCSHHH---HHHTTHHHHHCSSCEEECCSSSCCEEECCCCEEEEECSCCCCHHHHTTEEEEEECCCCHHHHHHHHTCTH
T ss_pred cccCcch---HHHHHHHHhcCCCeEeeccCchhhHHHhhcCcccChhHHhhcHHHHHHHhhhhccCCCCCeEEEEeCCHH
Confidence 000110 111222333200 000111 2445667799999999999988999999998 999987
No 349
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.68 E-value=3.6e-06 Score=89.52 Aligned_cols=70 Identities=21% Similarity=0.151 Sum_probs=45.6
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCCCC-CCcEEE----------ECCEecCCCCHHHHhcccEEecCCCCCCcccHHHH
Q 047171 342 DTPTIGLVGSSGSGKSTVISLLERFYDP-VKGNIL----------LDGHKIKKLQLKWLRSQMGLVNQEPILFSTSIKEN 410 (1224)
Q Consensus 342 ~~~~~~ivG~sGsGKSTl~~ll~~~~~~-~~G~i~----------~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~n 410 (1224)
++..++|+|||||||||+++.|++.++| ..+.+. .+|.+....+.+.+++.+ .|+.+++..++.+|
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~~e~~g~~y~~~~~~~f~~~~---~~~~~le~~~~~~~ 83 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDPETSFDYSISMTTRLPREGEQDGVDYYFRSREVFEQAI---KDGKMLEYAEYVGN 83 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHSTTCCCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHH---HTTCEEEEEEETTE
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCCCcEEEEEecccccCcCcccCCceeEEecHHHHHHHH---hcCcEEEEEEEccc
Confidence 4678999999999999999999999987 333332 234333334444444433 35555666666665
Q ss_pred HhcCC
Q 047171 411 ILIGK 415 (1224)
Q Consensus 411 i~~g~ 415 (1224)
.||.
T Consensus 84 -~yg~ 87 (208)
T 3tau_A 84 -YYGT 87 (208)
T ss_dssp -EEEE
T ss_pred -cCCC
Confidence 4554
No 350
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.67 E-value=1.7e-05 Score=83.78 Aligned_cols=57 Identities=16% Similarity=0.051 Sum_probs=38.3
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcccEEecCCCC
Q 047171 342 DTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPI 401 (1224)
Q Consensus 342 ~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~ 401 (1224)
++..++|+|||||||||++++|.+.+.|+.| +.+ +...+... ...+..++|++|++.
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~-~~i-~~~~~~~~-~~~~~~~~~~~~~~~ 61 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFEDPSTSYK-YSI-SMTTRQMR-EGEVDGVDYFFKTRD 61 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHCTTCCEE-CCC-CEECSCCC-TTCCBTTTBEECCHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhhCCCeE-Eec-ccccCCCC-CCccCCCceEEcCHH
Confidence 4668999999999999999999999977655 212 22222211 112234778888753
No 351
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=97.66 E-value=6.3e-05 Score=95.54 Aligned_cols=67 Identities=13% Similarity=0.125 Sum_probs=51.7
Q ss_pred CCCCChHHHHHHHHHHHhccCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHcC-CCeEEE-EeCCcchhhc
Q 047171 451 GVQLSGGQKQRIAIARALIRDPKILLLDEATS-ALDAESERIVQEALDQASQ-GRTMII-IAHRLSTIRK 517 (1224)
Q Consensus 451 g~~LSgGq~qriaiARal~~~~~ililDE~ts-~lD~~~~~~i~~~l~~~~~-~~t~i~-i~H~l~~~~~ 517 (1224)
..-+|+|+.+|..++++++.+++++|+|||.. +||.+....+.+.+..... .+++++ .||+.+.+..
T Consensus 188 I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~~l~~ 257 (773)
T 2xau_A 188 LKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQR 257 (773)
T ss_dssp EEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCHHHHH
T ss_pred EEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHHHHHH
Confidence 35578999999999999999999999999997 8998766555555555544 456666 4888776643
No 352
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=97.65 E-value=6.9e-05 Score=84.97 Aligned_cols=37 Identities=14% Similarity=0.108 Sum_probs=31.5
Q ss_pred ceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccC
Q 047171 995 IFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYD 1031 (1224)
Q Consensus 995 vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~ 1031 (1224)
-|+.+.--+++|+.+.|.|++|+||||++.-++.-..
T Consensus 35 ~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a 71 (338)
T 4a1f_A 35 QLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSAL 71 (338)
T ss_dssp HHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 5777776899999999999999999999988776543
No 353
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.65 E-value=1.8e-06 Score=103.31 Aligned_cols=115 Identities=16% Similarity=0.201 Sum_probs=80.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcccEEecCCCC-CCcc-cHHHHH-hcCCCCC---
Q 047171 345 TIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPI-LFST-SIKENI-LIGKPGA--- 418 (1224)
Q Consensus 345 ~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~-lf~~-ti~~ni-~~g~~~~--- 418 (1224)
-+.|+||+|+|||||+++|++... .|.+.++|.++.+......++++..++|+.. ..+. .+.|+| .++....
T Consensus 66 GvLL~GppGtGKTtLaraIa~~~~--~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~ 143 (499)
T 2dhr_A 66 GVLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGV 143 (499)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHTT--CCEEEEEGGGGTSSCTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSST
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC--CCEEEEehhHHHHhhhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCc
Confidence 389999999999999999999875 7899999988866544445566788888864 3333 566777 3443211
Q ss_pred --CHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCC
Q 047171 419 --SMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSA 483 (1224)
Q Consensus 419 --~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~ililDE~ts~ 483 (1224)
..++..+. +..++. .|||||+|+..|++|...+|++ ||||.-.
T Consensus 144 ~~~~~e~~~~-----l~~LL~---------------~Ldg~~~~~~viviAatn~p~~--LD~aLlr 188 (499)
T 2dhr_A 144 GGGNDEREQT-----LNQLLV---------------EMDGFEKDTAIVVMAATNRPDI--LDPALLR 188 (499)
T ss_dssp TTSSHHHHHH-----HHHHHH---------------HGGGCCSSCCCEEEECCSCGGG--SCTTTSS
T ss_pred CCCcHHHHHH-----HHHHHH---------------HhcccccCccEEEEEecCChhh--cCccccc
Confidence 11221111 112221 3678999999999999999988 8998764
No 354
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.64 E-value=4.4e-06 Score=94.20 Aligned_cols=110 Identities=20% Similarity=0.296 Sum_probs=61.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC--CCCcEEEECCEecCCCCHHHHhcccEEecCCCCCCcccHHHHH----hcCCCCC
Q 047171 345 TIGLVGSSGSGKSTVISLLERFYD--PVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFSTSIKENI----LIGKPGA 418 (1224)
Q Consensus 345 ~~~ivG~sGsGKSTl~~ll~~~~~--~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni----~~g~~~~ 418 (1224)
++||+|||||||||++++|.++++ |++|. ++++++|.+..+....+.. .+|.|+.
T Consensus 94 iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~-------------------v~~i~~D~f~~~~~~l~~~~~~~~~g~P~~ 154 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLKALLSRWPDHPN-------------------VEVITTDGFLYSNAKLEKQGLMKRKGFPES 154 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSTTCCC-------------------EEEEEGGGGBCCHHHHHHTTCGGGTTSGGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcccCCCCe-------------------EEEEeecccccchhhhhhHHHHhhccCccc
Confidence 789999999999999999999987 45554 4556666655443333321 1333322
Q ss_pred -CHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCC
Q 047171 419 -SMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALD 485 (1224)
Q Consensus 419 -~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~ililDE~ts~lD 485 (1224)
+.+.+ .+++..+..|-++. .- -..|-+..+|+.-+...+..|+|+|+|.+..-.|
T Consensus 155 ~D~~~l---------~~~L~~L~~g~~~v-~~--P~yd~~~~~r~~~~~~~v~~~dIVIvEGi~lL~~ 210 (321)
T 3tqc_A 155 YDMPSL---------LRVLNAIKSGQRNV-RI--PVYSHHYYDIVRGQYEIVDQPDIVILEGLNILQT 210 (321)
T ss_dssp BCHHHH---------HHHHHHHHTTCSSE-EE--EEEETTTTEEEEEEEEEECSCSEEEEECTTTTCC
T ss_pred ccHHHH---------HHHHHhhhcccccc-cc--chhhhhccccccCceeeccCCCEEEEEccccccc
Confidence 22222 23344444443110 00 0122222233332334567899999999987543
No 355
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=97.62 E-value=3.9e-05 Score=88.80 Aligned_cols=36 Identities=31% Similarity=0.438 Sum_probs=30.1
Q ss_pred CEEEEEcCCCCcHHHHHHHHhc--CCCCCCcEEEECCE
Q 047171 344 PTIGLVGSSGSGKSTVISLLER--FYDPVKGNILLDGH 379 (1224)
Q Consensus 344 ~~~~ivG~sGsGKSTl~~ll~~--~~~~~~G~i~~~g~ 379 (1224)
+.+++||++|||||||++.|.| +.++.+|.+.-.+.
T Consensus 35 p~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~ 72 (360)
T 3t34_A 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPL 72 (360)
T ss_dssp CEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCE
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcce
Confidence 3899999999999999999999 77888887654443
No 356
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.62 E-value=1.9e-05 Score=83.40 Aligned_cols=48 Identities=21% Similarity=0.131 Sum_probs=41.3
Q ss_pred EeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHH
Q 047171 1003 IEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLR 1050 (1224)
Q Consensus 1003 I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~ 1050 (1224)
.++|+.++|+|++||||||+++.|.+.+++..|.|.+.+.|....+..
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~~~~~ 66 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVERA 66 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGCCCHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcccCCHH
Confidence 567899999999999999999999999998899998887776554443
No 357
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.61 E-value=4e-06 Score=88.48 Aligned_cols=40 Identities=38% Similarity=0.586 Sum_probs=34.8
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEE--EECCEecC
Q 047171 342 DTPTIGLVGSSGSGKSTVISLLERFYDPVKGNI--LLDGHKIK 382 (1224)
Q Consensus 342 ~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i--~~~g~~~~ 382 (1224)
++..++|+|||||||||++++|++.+. ..|.+ ++||.++.
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d~d~~~ 65 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILDGDNVR 65 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEecCchhh
Confidence 466999999999999999999999987 77988 88886553
No 358
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.59 E-value=1.9e-05 Score=81.17 Aligned_cols=38 Identities=24% Similarity=0.353 Sum_probs=34.1
Q ss_pred eCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCC
Q 047171 1004 EAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIK 1045 (1224)
Q Consensus 1004 ~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~ 1045 (1224)
.+|+.++|+|++||||||+++.|.+.+ |.+.+|+.++.
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~----g~~~i~~d~~~ 43 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL----HAAFLDGDFLH 43 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH----TCEEEEGGGGC
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh----CcEEEeCcccc
Confidence 468999999999999999999999875 88999987765
No 359
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.56 E-value=4.3e-06 Score=90.37 Aligned_cols=60 Identities=23% Similarity=0.297 Sum_probs=44.8
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCC------CHHH----HhcccEEecCCCCCCc
Q 047171 341 PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKL------QLKW----LRSQMGLVNQEPILFS 404 (1224)
Q Consensus 341 ~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~------~~~~----~r~~i~~v~Q~~~lf~ 404 (1224)
+++.+++|+|++||||||++++|.+. .|+|.+.+.+.... .... .++.+++++|++.++.
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~ 87 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLLTEPVEKWRNVNGVNLLELMYKDPKKWAMPFQSYVTLT 87 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEECCTHHHHTCBTTBCHHHHHHHSHHHHHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEEecCHHHhhcccCCChHHHHHhChHhhhhhhHHHHHHH
Confidence 45679999999999999999999998 78999998875421 1111 2456788888765543
No 360
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.55 E-value=9.6e-06 Score=85.52 Aligned_cols=32 Identities=31% Similarity=0.558 Sum_probs=27.3
Q ss_pred cEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCcc
Q 047171 1007 KTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERN 1043 (1224)
Q Consensus 1007 e~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~d 1043 (1224)
..|+|+|++||||||+.+.|.+. |-..+|.-+
T Consensus 9 ~~I~i~G~~GsGKST~~~~La~~-----g~~~id~d~ 40 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLRSW-----GYPVLDLDA 40 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHT-----TCCEEEHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHC-----CCEEEcccH
Confidence 47999999999999999999985 777777644
No 361
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.55 E-value=6e-05 Score=86.14 Aligned_cols=58 Identities=16% Similarity=0.208 Sum_probs=41.8
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEE-EECCEecCCCCHHHHhcccEEecCCCC
Q 047171 341 PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNI-LLDGHKIKKLQLKWLRSQMGLVNQEPI 401 (1224)
Q Consensus 341 ~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i-~~~g~~~~~~~~~~~r~~i~~v~Q~~~ 401 (1224)
+++..+.|.||+|||||||+..+++...+..|.+ ++++.+.. +. ...+++|+.+|+..
T Consensus 59 ~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~--~~-~ra~rlgv~~~~l~ 117 (356)
T 3hr8_A 59 PRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHAL--DP-VYAKNLGVDLKSLL 117 (356)
T ss_dssp ETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCC--CH-HHHHHHTCCGGGCE
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeccccc--ch-HHHHHcCCchhhhh
Confidence 4567999999999999999999999888877765 66654322 22 24456777666543
No 362
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.54 E-value=0.00025 Score=82.68 Aligned_cols=44 Identities=18% Similarity=0.104 Sum_probs=33.2
Q ss_pred cCCCEEEEeccCCCCCHHHHHHHHHHHHHhc----CCCeEEEEccCchh
Q 047171 1133 KNPMILLLDEATSALDSASENLVQEALEKMM----VGRTCVVVAHRLST 1177 (1224)
Q Consensus 1133 ~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~----~~~TvI~IaHrl~t 1177 (1224)
.+|.+|+|||+... |......+.+.+.+.. .+.++|+++|+.+.
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~ 171 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDAV 171 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHH
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCchH
Confidence 45789999999886 8877777777765433 36688889998854
No 363
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.44 E-value=0.00016 Score=84.68 Aligned_cols=39 Identities=33% Similarity=0.370 Sum_probs=33.6
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEec
Q 047171 343 TPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKI 381 (1224)
Q Consensus 343 ~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~ 381 (1224)
+.+++++|++||||||++..|++.+.+..++|.+-+.|+
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~ 135 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADV 135 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCc
Confidence 348899999999999999999999998888887765553
No 364
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.44 E-value=2.4e-05 Score=88.10 Aligned_cols=43 Identities=14% Similarity=0.233 Sum_probs=35.4
Q ss_pred cceeceeEEEeCCc------EEEEEcCCCCChHHHHHHHhcccCC--CCce
Q 047171 994 MIFKGLTLKIEAGK------TVALVGQSGSGKSTIIGLIERFYDP--QSGS 1036 (1224)
Q Consensus 994 ~vL~~isl~I~~Ge------~vaIVG~SGsGKSTL~~lL~rl~~p--~~G~ 1036 (1224)
..|++++..+.+++ .+||+|+|||||||++++|.+++++ .+|.
T Consensus 74 ~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~ 124 (321)
T 3tqc_A 74 QTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPN 124 (321)
T ss_dssp HHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCC
T ss_pred HHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCe
Confidence 46777777777776 8999999999999999999999873 4444
No 365
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.42 E-value=2.7e-05 Score=80.03 Aligned_cols=52 Identities=29% Similarity=0.328 Sum_probs=37.7
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhc-ccEEecCC
Q 047171 342 DTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRS-QMGLVNQE 399 (1224)
Q Consensus 342 ~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~-~i~~v~Q~ 399 (1224)
++..++|+|++||||||+++.|.+.+ |.+.+++.++.. ...+++ .+|+++|+
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~~~----g~~~i~~d~~~~--~~~~~~~~~g~~~~~ 59 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAHQL----HAAFLDGDFLHP--RRNIEKMASGEPLND 59 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHHH----TCEEEEGGGGCC--HHHHHHHHTTCCCCH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHhh----CcEEEeCccccc--hHHHHHhhcCcCCCc
Confidence 45689999999999999999999875 888998866542 122222 35555554
No 366
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.42 E-value=4.6e-05 Score=90.52 Aligned_cols=66 Identities=17% Similarity=0.310 Sum_probs=44.8
Q ss_pred CCCEEEEeccCCCCCH-HHHHHHHHHHHHhc-CCCeEEEEccCc-hhhhh-cCEEEE-EeCCEEEEecChh
Q 047171 1134 NPMILLLDEATSALDS-ASENLVQEALEKMM-VGRTCVVVAHRL-STIQK-ADNIVV-IKNGKVVEQGTQS 1199 (1224)
Q Consensus 1134 ~p~ILlLDEaTSaLD~-~te~~I~~~l~~~~-~~~TvI~IaHrl-~ti~~-aD~I~v-l~~G~Ive~Gt~~ 1199 (1224)
+|++|++||+..-.+. .+...+...+++.. .++++|++||+. ..+.. .+++.- ++.|.+++.+.|+
T Consensus 194 ~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~ 264 (440)
T 2z4s_A 194 KVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPD 264 (440)
T ss_dssp TCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCC
T ss_pred CCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCC
Confidence 8999999999887775 57777888887754 467888889984 33222 222222 4557777666553
No 367
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.37 E-value=8.2e-05 Score=84.71 Aligned_cols=26 Identities=23% Similarity=0.279 Sum_probs=22.4
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHhcC
Q 047171 341 PDTPTIGLVGSSGSGKSTVISLLERF 366 (1224)
Q Consensus 341 ~~~~~~~ivG~sGsGKSTl~~ll~~~ 366 (1224)
+.+..+.|.||+|||||||+..++..
T Consensus 105 ~~G~i~~i~G~~GsGKT~la~~la~~ 130 (324)
T 2z43_A 105 ETRTMTEFFGEFGSGKTQLCHQLSVN 130 (324)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHhHHHHHHHHH
Confidence 45679999999999999999888764
No 368
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.36 E-value=0.00012 Score=84.08 Aligned_cols=28 Identities=18% Similarity=0.159 Sum_probs=25.6
Q ss_pred EEeCCcEEEEEcCCCCChHHHHHHHhcc
Q 047171 1002 KIEAGKTVALVGQSGSGKSTIIGLIERF 1029 (1224)
Q Consensus 1002 ~I~~Ge~vaIVG~SGsGKSTL~~lL~rl 1029 (1224)
-+++|+.+.|.||+||||||++..+...
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999999888764
No 369
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.34 E-value=2.9e-05 Score=80.24 Aligned_cols=41 Identities=37% Similarity=0.484 Sum_probs=34.6
Q ss_pred eCCcEEEEEcCCCCChHHHHHHHhcccCCCCc--eEEECCccCC
Q 047171 1004 EAGKTVALVGQSGSGKSTIIGLIERFYDPQSG--SVMVDERNIK 1045 (1224)
Q Consensus 1004 ~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G--~I~idG~di~ 1045 (1224)
++|+.++|+|++||||||++++|.+.+.+ .| .|.+||..++
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~-~g~~~i~~d~~~~~ 45 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC-HGIPCYTLDGDNIR 45 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHHHHT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh-CCCcEEEECChHHH
Confidence 47999999999999999999999998876 67 6777876554
No 370
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.29 E-value=0.00053 Score=79.85 Aligned_cols=45 Identities=16% Similarity=0.146 Sum_probs=32.9
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc----CCCeEEEEeCCcchh
Q 047171 470 RDPKILLLDEATSALDAESERIVQEALDQAS----QGRTMIIIAHRLSTI 515 (1224)
Q Consensus 470 ~~~~ililDE~ts~lD~~~~~~i~~~l~~~~----~~~t~i~i~H~l~~~ 515 (1224)
.+|.++++||+... |......+.+.+.... .+.++|+++|+.+..
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~ 172 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDAVL 172 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHH
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHH
Confidence 45889999999876 8777777766664432 366888889987543
No 371
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.29 E-value=8e-05 Score=84.25 Aligned_cols=60 Identities=18% Similarity=0.298 Sum_probs=47.3
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCH----HHH-----hcccEEe-cCCCC
Q 047171 342 DTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQL----KWL-----RSQMGLV-NQEPI 401 (1224)
Q Consensus 342 ~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~----~~~-----r~~i~~v-~Q~~~ 401 (1224)
++.+++++|++||||||++..|++.+.+..|+|.+.+.|+..... ..+ +.++.++ +|.+.
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~~ 173 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKLN 173 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSSTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCCC
Confidence 356899999999999999999999999999999998888754321 223 5568888 66543
No 372
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.28 E-value=5.1e-05 Score=87.13 Aligned_cols=43 Identities=21% Similarity=0.302 Sum_probs=38.1
Q ss_pred cceeceeEEEeCCcE--EEEEcCCCCChHHHHHHHhcccCCCCce
Q 047171 994 MIFKGLTLKIEAGKT--VALVGQSGSGKSTIIGLIERFYDPQSGS 1036 (1224)
Q Consensus 994 ~vL~~isl~I~~Ge~--vaIVG~SGsGKSTL~~lL~rl~~p~~G~ 1036 (1224)
.+++.++..|+.|+. +.+.||+|+||||+++++.+...+..+.
T Consensus 32 ~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~ 76 (340)
T 1sxj_C 32 EVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNYS 76 (340)
T ss_dssp HHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSHH
T ss_pred HHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCcc
Confidence 488999999999998 9999999999999999999987765543
No 373
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.27 E-value=7e-05 Score=84.28 Aligned_cols=150 Identities=13% Similarity=0.129 Sum_probs=78.9
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEE-CCccCCCCCHHHHhcceEEEecCCCCCcccHHHHHccCCCCCCH
Q 047171 1005 AGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMV-DERNIKSYNLRKLRSCIALVSQEPTLFAGTIRQNIVYGKEVATE 1083 (1224)
Q Consensus 1005 ~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~i-dG~di~~~~~~~lR~~i~~V~Qdp~LF~gTIreNl~~~~~~~~d 1083 (1224)
++.+|+|+|++|+|||||++.|.|.- +.+ .+.+-. ..++..++++|+..-+. +.| .+| ...
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~------~~i~s~~~~t-----Tr~~~~gi~~~~~~~i~--~iD--TpG---~~~ 68 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQK------ISITSRKAQT-----TRHRIVGIHTEGAYQAI--YVD--TPG---LHM 68 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCS------EEECCCCSSC-----CSSCEEEEEEETTEEEE--EES--SSS---CCH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCC------ccccCCCCCc-----ceeeEEEEEEECCeeEE--EEE--CcC---CCc
Confidence 34489999999999999999999852 222 111111 12345678888764211 100 122 110
Q ss_pred HHHHHHHHHHhHHHHHHhccc---ccccc--cCCCCCCCChHHHHHHHHHHHHc--cCCCEEEEeccCCCCCHHH-HHHH
Q 047171 1084 AEIRKAAVLANAHEFISSTED---GYDTY--CGERGVQLSGGQKQRIALARAVL--KNPMILLLDEATSALDSAS-ENLV 1155 (1224)
Q Consensus 1084 eei~~al~~a~l~~~I~~lp~---gldt~--vge~G~~LSGGQrQRlaLARAll--~~p~ILlLDEaTSaLD~~t-e~~I 1155 (1224)
+-...+. .++...... ..|.. |-+... +|+|++ .+++++. ..|.|+++ +-+|... ...+
T Consensus 69 -~~~~~l~----~~~~~~~~~~l~~~D~vl~Vvd~~~-~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~ 135 (301)
T 1ega_A 69 -EEKRAIN----RLMNKAASSSIGDVELVIFVVEGTR-WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADL 135 (301)
T ss_dssp -HHHHHHH----HHHTCCTTSCCCCEEEEEEEEETTC-CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHH
T ss_pred -cchhhHH----HHHHHHHHHHHhcCCEEEEEEeCCC-CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHH
Confidence 1111111 112111111 11221 112223 999986 4566665 67889988 6788765 5556
Q ss_pred HHHHHHhcC--C--CeEEEEccCchhhhh-cCEEE
Q 047171 1156 QEALEKMMV--G--RTCVVVAHRLSTIQK-ADNIV 1185 (1224)
Q Consensus 1156 ~~~l~~~~~--~--~TvI~IaHrl~ti~~-aD~I~ 1185 (1224)
.+.+.++.+ + .++.+.||.-..+.. +|.|.
T Consensus 136 ~~~l~~l~~~~~~~~~i~iSA~~g~~v~~l~~~i~ 170 (301)
T 1ega_A 136 LPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVR 170 (301)
T ss_dssp HHHHHHHHTTSCCSEEEECCTTTTTTHHHHHHHHH
T ss_pred HHHHHHHHHhcCcCceEEEECCCCCCHHHHHHHHH
Confidence 666665543 3 244455677666554 45443
No 374
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.24 E-value=6.8e-05 Score=79.07 Aligned_cols=43 Identities=19% Similarity=0.159 Sum_probs=36.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCC
Q 047171 343 TPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQ 385 (1224)
Q Consensus 343 ~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~ 385 (1224)
+.+++|+|+|||||||+++.|.+.+++..|.|.+.+.|....+
T Consensus 22 ~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~~~ 64 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVE 64 (201)
T ss_dssp SEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGCCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcccCC
Confidence 4589999999999999999999999988999888766654433
No 375
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=97.23 E-value=0.00063 Score=77.06 Aligned_cols=98 Identities=12% Similarity=0.119 Sum_probs=61.2
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcccEEecCCCCCCcccHHHHHhcCCCCCCH
Q 047171 341 PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFSTSIKENILIGKPGASM 420 (1224)
Q Consensus 341 ~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~g~~~~~~ 420 (1224)
.++..+.|.|++|+|||||+.-++.......+ .+.|++=| .+.
T Consensus 44 ~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~-------------------~Vl~fSlE------------------ms~ 86 (338)
T 4a1f_A 44 NKGSLVIIGARPSMGKTSLMMNMVLSALNDDR-------------------GVAVFSLE------------------MSA 86 (338)
T ss_dssp CTTCEEEEEECTTSCHHHHHHHHHHHHHHTTC-------------------EEEEEESS------------------SCH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCC-------------------eEEEEeCC------------------CCH
Confidence 45779999999999999999887655432222 23443221 233
Q ss_pred HHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCC
Q 047171 421 ETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALD 485 (1224)
Q Consensus 421 ~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~ililDE~ts~lD 485 (1224)
+++..-.... ...++ ++.... ..||++++||++.|...+.+++++|.|+|...+|
T Consensus 87 ~ql~~Rlls~-----~~~v~--~~~l~~---g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si~ 141 (338)
T 4a1f_A 87 EQLALRALSD-----LTSIN--MHDLES---GRLDDDQWENLAKCFDHLSQKKLFFYDKSYVRIE 141 (338)
T ss_dssp HHHHHHHHHH-----HHCCC--HHHHHH---TCCCHHHHHHHHHHHHHHHHSCEEEECCTTCCHH
T ss_pred HHHHHHHHHH-----hhCCC--HHHHhc---CCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCcHH
Confidence 3332221111 01110 111111 2699999999999999999999999999876544
No 376
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=97.23 E-value=5.5e-05 Score=78.23 Aligned_cols=56 Identities=13% Similarity=0.127 Sum_probs=37.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCE--ecCCCCH----HHHhcccEEecCCC
Q 047171 345 TIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGH--KIKKLQL----KWLRSQMGLVNQEP 400 (1224)
Q Consensus 345 ~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~--~~~~~~~----~~~r~~i~~v~Q~~ 400 (1224)
.++|+||||||||||+++|.+...+..|...-.+. ++-.... ...+..|.+++|++
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~ 89 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLGGLSAKAMRASRISDLIFAGSKNEPPAKYAEVAIYFNNE 89 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTTCCCTGGGTCSSGGGGBCCCC----CCSCEEEEEEEECT
T ss_pred cEEEECCCCCCHHHHHHHHHHHHcCCcccccccccchheeecccccCCCCceEEEEEEEeCC
Confidence 88999999999999999999988777665422221 1100000 01245789999986
No 377
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.21 E-value=0.0012 Score=71.41 Aligned_cols=28 Identities=36% Similarity=0.379 Sum_probs=24.0
Q ss_pred EEEEEcCCCCChHHHHHHHhcccCCCCc
Q 047171 1008 TVALVGQSGSGKSTIIGLIERFYDPQSG 1035 (1224)
Q Consensus 1008 ~vaIVG~SGsGKSTL~~lL~rl~~p~~G 1035 (1224)
+|+|+|++|+|||||++.|+|...+.+|
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~~~~ 58 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVFHSG 58 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCSCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcCccC
Confidence 6999999999999999999987665554
No 378
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.18 E-value=0.0014 Score=70.96 Aligned_cols=29 Identities=31% Similarity=0.233 Sum_probs=24.9
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcCCCCCCc
Q 047171 344 PTIGLVGSSGSGKSTVISLLERFYDPVKG 372 (1224)
Q Consensus 344 ~~~~ivG~sGsGKSTl~~ll~~~~~~~~G 372 (1224)
..++|+|++|+|||||++.|+|...+.+|
T Consensus 30 ~~i~lvG~~g~GKStlin~l~g~~~~~~~ 58 (239)
T 3lxx_A 30 LRIVLVGKTGAGKSATGNSILGRKVFHSG 58 (239)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTSCCSCC-
T ss_pred eEEEEECCCCCCHHHHHHHHcCCCcCccC
Confidence 38999999999999999999997766655
No 379
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.17 E-value=7.7e-05 Score=95.24 Aligned_cols=32 Identities=19% Similarity=0.366 Sum_probs=28.8
Q ss_pred EEEeCCcEEEEEcCCCCChHHHHHHHhcccCC
Q 047171 1001 LKIEAGKTVALVGQSGSGKSTIIGLIERFYDP 1032 (1224)
Q Consensus 1001 l~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p 1032 (1224)
|.+++|+.+.|+||+|||||||+++|.+.+.+
T Consensus 233 l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~ 264 (806)
T 1ypw_A 233 IGVKPPRGILLYGPPGTGKTLIARAVANETGA 264 (806)
T ss_dssp SCCCCCCEEEECSCTTSSHHHHHHHHHHTTTC
T ss_pred cCCCCCCeEEEECcCCCCHHHHHHHHHHHcCC
Confidence 46789999999999999999999999998743
No 380
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.15 E-value=0.00088 Score=78.27 Aligned_cols=142 Identities=23% Similarity=0.226 Sum_probs=81.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHH-HhcccEEecCCCCCCcccHHHHHhc--CCCCCC
Q 047171 343 TPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKW-LRSQMGLVNQEPILFSTSIKENILI--GKPGAS 419 (1224)
Q Consensus 343 ~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~-~r~~i~~v~Q~~~lf~~ti~~ni~~--g~~~~~ 419 (1224)
+.+++++|++||||||++..|++.+.+..|+|.+.+.|+..-...+ ++. .+ -..|+-+ ..+..+
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~-~~------------~~~gv~v~~~~~~~~ 164 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRL-LG------------EKVGVPVLEVMDGES 164 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHH-HH------------HHHTCCEEECCTTCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHH-hc------------ccCCccEEecCCCCC
Confidence 4589999999999999999999999999999999877765422211 211 00 0011110 011122
Q ss_pred HHHHHHHHHHhcHHHHHHhc-cccccccccCCCCCCC---hHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHH
Q 047171 420 METVVKAAQAANVHDFIMKL-NDGYETKVGQFGVQLS---GGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEA 495 (1224)
Q Consensus 420 ~~~~~~~~~~~~~~~~i~~l-~~g~~t~~~~~g~~LS---gGq~qriaiARal~~~~~ililDE~ts~lD~~~~~~i~~~ 495 (1224)
..++. .+.+..+ ..+||..+=+-+..++ ....+...+++++..++-+|++| ++++.|.... + +.
T Consensus 165 p~~i~--------~~~l~~~~~~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvD-a~tgq~av~~--a-~~ 232 (425)
T 2ffh_A 165 PESIR--------RRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLD-AMTGQEALSV--A-RA 232 (425)
T ss_dssp HHHHH--------HHHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEE-GGGTTHHHHH--H-HH
T ss_pred HHHHH--------HHHHHHHHHCCCCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEe-ccchHHHHHH--H-HH
Confidence 33331 1223333 2467765444333332 34677778888887777778888 4556555422 1 22
Q ss_pred HHHHcCCCeEEEEeC
Q 047171 496 LDQASQGRTMIIIAH 510 (1224)
Q Consensus 496 l~~~~~~~t~i~i~H 510 (1224)
+.+ .-+.+-|++|+
T Consensus 233 f~~-~l~i~GVIlTK 246 (425)
T 2ffh_A 233 FDE-KVGVTGLVLTK 246 (425)
T ss_dssp HHH-HTCCCEEEEES
T ss_pred HHh-cCCceEEEEeC
Confidence 222 12457777775
No 381
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.14 E-value=0.00042 Score=82.22 Aligned_cols=43 Identities=16% Similarity=0.362 Sum_probs=33.4
Q ss_pred cCCCEEEEeCCCCCCCH-HHHHHHHHHHHHH-cCCCeEEEEeCCc
Q 047171 470 RDPKILLLDEATSALDA-ESERIVQEALDQA-SQGRTMIIIAHRL 512 (1224)
Q Consensus 470 ~~~~ililDE~ts~lD~-~~~~~i~~~l~~~-~~~~t~i~i~H~l 512 (1224)
.+|++|++||+..-.+. .++..+...+... ..|+.+|++||+.
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~ 237 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDRE 237 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSC
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 38999999999887764 5666777777664 4578899999984
No 382
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.12 E-value=3.5e-05 Score=81.10 Aligned_cols=31 Identities=48% Similarity=0.686 Sum_probs=26.0
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCE
Q 047171 344 PTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGH 379 (1224)
Q Consensus 344 ~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~ 379 (1224)
..++|+|++||||||+.+.|... |-..+|.-
T Consensus 9 ~~I~i~G~~GsGKST~~~~La~~-----g~~~id~d 39 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLRSW-----GYPVLDLD 39 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHT-----TCCEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHC-----CCEEEccc
Confidence 37999999999999999999986 66666543
No 383
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.12 E-value=0.0013 Score=73.53 Aligned_cols=71 Identities=18% Similarity=0.229 Sum_probs=44.6
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeccCCCCCHHH----------HHHHHHHHHHhcC-----CCeEEEEccCchhh----
Q 047171 1118 SGGQKQRIALARAVLKNPMILLLDEATSALDSAS----------ENLVQEALEKMMV-----GRTCVVVAHRLSTI---- 1178 (1224)
Q Consensus 1118 SGGQrQRlaLARAll~~p~ILlLDEaTSaLD~~t----------e~~I~~~l~~~~~-----~~TvI~IaHrl~ti---- 1178 (1224)
++++++|-.+++|...+|.+|++||+.+-.+... ...+...++.... +..+|.+|++.+.+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l 176 (297)
T 3b9p_A 97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAA 176 (297)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHH
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHH
Confidence 3577788888888888999999999988765422 2223444443321 23456677876432
Q ss_pred -hhcCEEEEEe
Q 047171 1179 -QKADNIVVIK 1188 (1224)
Q Consensus 1179 -~~aD~I~vl~ 1188 (1224)
+.+|+++.+.
T Consensus 177 ~~R~~~~i~~~ 187 (297)
T 3b9p_A 177 LRRFTKRVYVS 187 (297)
T ss_dssp HHHCCEEEECC
T ss_pred HhhCCeEEEeC
Confidence 3577766553
No 384
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.10 E-value=0.0018 Score=70.82 Aligned_cols=46 Identities=26% Similarity=0.344 Sum_probs=30.2
Q ss_pred ceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccC
Q 047171 995 IFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNI 1044 (1224)
Q Consensus 995 vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di 1044 (1224)
.++++++.+++| +.|+||+|+||||+++++.+..... -+.+++.++
T Consensus 36 ~~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~~~--~~~i~~~~~ 81 (257)
T 1lv7_A 36 RFQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAKVP--FFTISGSDF 81 (257)
T ss_dssp GC-----CCCCE--EEEECCTTSCHHHHHHHHHHHHTCC--EEEECSCSS
T ss_pred HHHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcCCC--EEEEeHHHH
Confidence 345555555555 9999999999999999999876432 355665443
No 385
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.08 E-value=0.00019 Score=85.25 Aligned_cols=68 Identities=24% Similarity=0.307 Sum_probs=43.8
Q ss_pred EEEEEcCCCCChHHHHHHHhcccC------------CCCceEEECCccCCCCCHHHHhcceEEEecCCCCCcc-cHHHHH
Q 047171 1008 TVALVGQSGSGKSTIIGLIERFYD------------PQSGSVMVDERNIKSYNLRKLRSCIALVSQEPTLFAG-TIRQNI 1074 (1224)
Q Consensus 1008 ~vaIVG~SGsGKSTL~~lL~rl~~------------p~~G~I~idG~di~~~~~~~lR~~i~~V~Qdp~LF~g-TIreNl 1074 (1224)
+++|+|++|+|||||++.|.|... |.+|.+.++|.++.-++..-+|+..++.+|....|.. +..+++
T Consensus 182 kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i 261 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSI 261 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHHHHH
Confidence 699999999999999999999743 6789999999877666666666767777777666642 344555
Q ss_pred c
Q 047171 1075 V 1075 (1224)
Q Consensus 1075 ~ 1075 (1224)
.
T Consensus 262 ~ 262 (439)
T 1mky_A 262 E 262 (439)
T ss_dssp H
T ss_pred h
Confidence 4
No 386
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=97.08 E-value=0.00052 Score=74.17 Aligned_cols=131 Identities=15% Similarity=0.147 Sum_probs=70.8
Q ss_pred EeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcceEEEecCCCCCc-ccHHHHHccCCCCC
Q 047171 1003 IEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIALVSQEPTLFA-GTIRQNIVYGKEVA 1081 (1224)
Q Consensus 1003 I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qdp~LF~-gTIreNl~~~~~~~ 1081 (1224)
+.+|+.+.++|+|||||||++.++........|. ...+.++.|.|.... -++.+|+.......
T Consensus 73 i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~----------------~~~~~~l~~~p~~~la~q~~~~~~~~~~~~ 136 (235)
T 3llm_A 73 ISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDR----------------AAECNIVVTQPRRISAVSVAERVAFERGEE 136 (235)
T ss_dssp HHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTC----------------GGGCEEEEEESSHHHHHHHHHHHHHTTTCC
T ss_pred HhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCC----------------CCceEEEEeccchHHHHHHHHHHHHHhccc
Confidence 4579999999999999999887654321111111 134677888886443 35666664221100
Q ss_pred CHHHHHHHHHHHhHHHHHHhccccccccc----CCCC---CCCChHHHHHHHHHHHHccCCCEEEEeccCC-CCCHHHHH
Q 047171 1082 TEAEIRKAAVLANAHEFISSTEDGYDTYC----GERG---VQLSGGQKQRIALARAVLKNPMILLLDEATS-ALDSASEN 1153 (1224)
Q Consensus 1082 ~deei~~al~~a~l~~~I~~lp~gldt~v----ge~G---~~LSGGQrQRlaLARAll~~p~ILlLDEaTS-aLD~~te~ 1153 (1224)
- + ...|+.... ...+ .--+.|.-.+. .+.-+++-+++|+||+-. ++|.....
T Consensus 137 ~-----------~-------~~~g~~~~~~~~~~~~~~~Ivv~Tpg~l~~~--l~~~l~~~~~lVlDEah~~~~~~~~~~ 196 (235)
T 3llm_A 137 P-----------G-------KSCGYSVRFESILPRPHASIMFCTVGVLLRK--LEAGIRGISHVIVDEIHERDINTDFLL 196 (235)
T ss_dssp T-----------T-------SSEEEEETTEEECCCSSSEEEEEEHHHHHHH--HHHCCTTCCEEEECCTTSCCHHHHHHH
T ss_pred c-----------C-------ceEEEeechhhccCCCCCeEEEECHHHHHHH--HHhhhcCCcEEEEECCccCCcchHHHH
Confidence 0 0 001111111 0000 01244655444 344689999999999965 57766554
Q ss_pred HHHHHHHHhcCCCeEE
Q 047171 1154 LVQEALEKMMVGRTCV 1169 (1224)
Q Consensus 1154 ~I~~~l~~~~~~~TvI 1169 (1224)
...+.+.....+..+|
T Consensus 197 ~~l~~i~~~~~~~~~i 212 (235)
T 3llm_A 197 VVLRDVVQAYPEVRIV 212 (235)
T ss_dssp HHHHHHHHHCTTSEEE
T ss_pred HHHHHHHhhCCCCeEE
Confidence 3444444444444333
No 387
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.07 E-value=0.00031 Score=83.49 Aligned_cols=69 Identities=22% Similarity=0.323 Sum_probs=42.4
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcCCC------------CCCcEEEECCEecCCCCHHHHhcccEEecCCCCCCcc-cHHHH
Q 047171 344 PTIGLVGSSGSGKSTVISLLERFYD------------PVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFST-SIKEN 410 (1224)
Q Consensus 344 ~~~~ivG~sGsGKSTl~~ll~~~~~------------~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~-ti~~n 410 (1224)
..++|||++|+|||||++.|+|... |.+|.+.++|+++.-++...+++..++.+|....|.. +..++
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~ 260 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDS 260 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHHHH
Confidence 4799999999999999999999853 7789999999977655544455555555565544432 33444
Q ss_pred Hh
Q 047171 411 IL 412 (1224)
Q Consensus 411 i~ 412 (1224)
+.
T Consensus 261 i~ 262 (439)
T 1mky_A 261 IE 262 (439)
T ss_dssp HH
T ss_pred Hh
Confidence 43
No 388
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=97.07 E-value=0.00012 Score=76.90 Aligned_cols=56 Identities=18% Similarity=0.317 Sum_probs=37.6
Q ss_pred EEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhc----ccC----CCCceEEECCc
Q 047171 984 FFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIER----FYD----PQSGSVMVDER 1042 (1224)
Q Consensus 984 sf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~r----l~~----p~~G~I~idG~ 1042 (1224)
+++|++ -.++++++|+..+++ +|+++|++|+|||||++.+.+ .+. ++.+.+.++|.
T Consensus 6 ~~~~~~--~~~~l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~ 69 (198)
T 1f6b_A 6 DWIYSG--FSSVLQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGM 69 (198)
T ss_dssp ---------CHHHHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSCC------CCCCCSCEEEEETTE
T ss_pred HHHHHH--HHHHHHHhhccCCCc-EEEEECCCCCCHHHHHHHHhcCCCCccCCCCCceeEEEEECCE
Confidence 456763 245899999998887 699999999999999999986 222 23456666664
No 389
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.07 E-value=8.2e-05 Score=85.30 Aligned_cols=52 Identities=15% Similarity=0.167 Sum_probs=46.2
Q ss_pred cceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCC
Q 047171 994 MIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIK 1045 (1224)
Q Consensus 994 ~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~ 1045 (1224)
.+++++++++++|.+++|+|++|+||||+++.|.+.+.+..|++.+-+.|..
T Consensus 44 ~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~ 95 (341)
T 2p67_A 44 QLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPS 95 (341)
T ss_dssp HHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred HHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCC
Confidence 4788999999999999999999999999999999999888888877666553
No 390
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.06 E-value=9.9e-05 Score=90.03 Aligned_cols=79 Identities=16% Similarity=0.185 Sum_probs=48.6
Q ss_pred EEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcceEEE
Q 047171 980 LKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIALV 1059 (1224)
Q Consensus 980 ~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~~V 1059 (1224)
++++..+|. +..+++++++++ +|+.+.|+||+|+||||++++|.+...+..|.|.++|.....--....++.++..
T Consensus 86 ~~~vk~~i~---~~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~g~~~~~ig~~ 161 (543)
T 3m6a_A 86 LEKVKERIL---EYLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRGHRRTYVGAM 161 (543)
T ss_dssp CHHHHHHHH---HHHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC------------------
T ss_pred HHHHHHHHH---HHHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhhhHHHHHhccC
Confidence 444544452 234678888888 8999999999999999999999999999999998888543221122233455555
Q ss_pred ecC
Q 047171 1060 SQE 1062 (1224)
Q Consensus 1060 ~Qd 1062 (1224)
+|.
T Consensus 162 ~~~ 164 (543)
T 3m6a_A 162 PGR 164 (543)
T ss_dssp --C
T ss_pred chH
Confidence 554
No 391
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.05 E-value=0.00029 Score=81.89 Aligned_cols=31 Identities=16% Similarity=0.370 Sum_probs=26.7
Q ss_pred eCCcEEEEEcCCCCChHHHHHHHhcccCCCC
Q 047171 1004 EAGKTVALVGQSGSGKSTIIGLIERFYDPQS 1034 (1224)
Q Consensus 1004 ~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~ 1034 (1224)
+++..+.|.||+|+|||||++.+.+...+..
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~ 73 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKF 73 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHHHT
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 4578899999999999999999999876543
No 392
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.02 E-value=0.00011 Score=89.53 Aligned_cols=37 Identities=24% Similarity=0.385 Sum_probs=32.7
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECC
Q 047171 342 DTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDG 378 (1224)
Q Consensus 342 ~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g 378 (1224)
+++.++|+||+|+|||||++.|.+...+..|+|.++|
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~ 143 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGG 143 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecc
Confidence 3568999999999999999999999988888887665
No 393
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=96.94 E-value=0.00024 Score=81.51 Aligned_cols=42 Identities=26% Similarity=0.321 Sum_probs=36.5
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCC
Q 047171 1005 AGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKS 1046 (1224)
Q Consensus 1005 ~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~ 1046 (1224)
++.+|+|+|++|||||||++.|.|.+.+.+|+|.+.+.|...
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~ 114 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSS 114 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC--
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCC
Confidence 467899999999999999999999998889999888877654
No 394
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.93 E-value=0.0025 Score=71.21 Aligned_cols=70 Identities=20% Similarity=0.223 Sum_probs=43.3
Q ss_pred ChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHH----------HHHHHHHHHHHc-----CCCeEEEEeCCcchh----
Q 047171 455 SGGQKQRIAIARALIRDPKILLLDEATSALDAES----------ERIVQEALDQAS-----QGRTMIIIAHRLSTI---- 515 (1224)
Q Consensus 455 SgGq~qriaiARal~~~~~ililDE~ts~lD~~~----------~~~i~~~l~~~~-----~~~t~i~i~H~l~~~---- 515 (1224)
++++++|-.++++...+|.+|++||+.+-++... ...+...++... .+..+|.+|++.+.+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l 176 (297)
T 3b9p_A 97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAA 176 (297)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHH
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHH
Confidence 3677888888888888999999999988765321 122333333322 123466678876543
Q ss_pred -hccCEEEEE
Q 047171 516 -RKADLIGVL 524 (1224)
Q Consensus 516 -~~ad~i~vl 524 (1224)
+++|+++.+
T Consensus 177 ~~R~~~~i~~ 186 (297)
T 3b9p_A 177 LRRFTKRVYV 186 (297)
T ss_dssp HHHCCEEEEC
T ss_pred HhhCCeEEEe
Confidence 346665554
No 395
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.92 E-value=0.00016 Score=76.84 Aligned_cols=44 Identities=34% Similarity=0.362 Sum_probs=38.6
Q ss_pred EEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCc--eEEECCccC
Q 047171 1001 LKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSG--SVMVDERNI 1044 (1224)
Q Consensus 1001 l~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G--~I~idG~di 1044 (1224)
+.+++|..+.|+|++||||||+.+.|.+.+.|..| .+.+||.++
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~ 65 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNI 65 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHH
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHH
Confidence 45678999999999999999999999999988888 888886543
No 396
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.90 E-value=0.0012 Score=75.04 Aligned_cols=27 Identities=15% Similarity=0.251 Sum_probs=23.8
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcccCC
Q 047171 1006 GKTVALVGQSGSGKSTIIGLIERFYDP 1032 (1224)
Q Consensus 1006 Ge~vaIVG~SGsGKSTL~~lL~rl~~p 1032 (1224)
+..+.|.||+|+|||||++.+.+...+
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~~ 63 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAKK 63 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHH
Confidence 467999999999999999999987654
No 397
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.90 E-value=0.00035 Score=75.20 Aligned_cols=44 Identities=20% Similarity=0.272 Sum_probs=32.1
Q ss_pred eeceeEEEe---CCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEEC
Q 047171 996 FKGLTLKIE---AGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVD 1040 (1224)
Q Consensus 996 L~~isl~I~---~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~id 1040 (1224)
|.++|+.+. +|..++|.|++||||||+++.|...+.+ .+.+...
T Consensus 13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~~ 59 (229)
T 4eaq_A 13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIMT 59 (229)
T ss_dssp -------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEEE
T ss_pred ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCceee
Confidence 556666665 8999999999999999999999999987 6666543
No 398
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.90 E-value=0.00036 Score=71.30 Aligned_cols=33 Identities=30% Similarity=0.399 Sum_probs=28.4
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECC
Q 047171 1005 AGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDE 1041 (1224)
Q Consensus 1005 ~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG 1041 (1224)
.|+.++|+|++||||||++++|.+.+.+ +.+|+
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~----~~id~ 35 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNM----EFYDS 35 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTTC----EEEEH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCC----CEEec
Confidence 4788999999999999999999998754 56765
No 399
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.90 E-value=0.00021 Score=75.39 Aligned_cols=53 Identities=15% Similarity=0.162 Sum_probs=36.9
Q ss_pred EEeCCcEEEEEcCCCCChHHHHHHHhcccCC-CCceE----------EECCccCCCCCHHHHhc
Q 047171 1002 KIEAGKTVALVGQSGSGKSTIIGLIERFYDP-QSGSV----------MVDERNIKSYNLRKLRS 1054 (1224)
Q Consensus 1002 ~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p-~~G~I----------~idG~di~~~~~~~lR~ 1054 (1224)
...+|..++|+|+|||||||+.+.|...++. ..+.+ .+||.+..-++.+.+++
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~~~~~~~~~~ttR~~~~~e~~g~~~~~~~~~~~~~ 71 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEFPSRFRFSISCTTRNKREKETNGVDYYFVDKDDFER 71 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHCTTTEEECCEEECSCCCTTCCBTTTEEECCHHHHHH
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhCccceeeeeeecCCCCCCCCCCCcceeeCCHHHHHH
Confidence 3567999999999999999999999887642 11211 23566665566666554
No 400
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.89 E-value=0.0019 Score=72.10 Aligned_cols=50 Identities=22% Similarity=0.271 Sum_probs=43.7
Q ss_pred ec-eeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCC
Q 047171 997 KG-LTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSY 1047 (1224)
Q Consensus 997 ~~-isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~ 1047 (1224)
++ ++++.+ |+.++++|++|+||||++..|.+.+.+..|++.+.+.|+..-
T Consensus 89 ~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~ 139 (297)
T 1j8m_F 89 EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRP 139 (297)
T ss_dssp CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSS
T ss_pred ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCH
Confidence 45 777776 999999999999999999999999998889999988887553
No 401
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.89 E-value=0.0034 Score=71.91 Aligned_cols=48 Identities=17% Similarity=0.219 Sum_probs=32.8
Q ss_pred cceecee--EEEeCCcEEEEEcCCCCChHHHHHHHhcccCCC-CceEEECC
Q 047171 994 MIFKGLT--LKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQ-SGSVMVDE 1041 (1224)
Q Consensus 994 ~vL~~is--l~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~-~G~I~idG 1041 (1224)
+.|+.+- =-+++|+.+.|.|++|+|||||+.-+....... ...+++|.
T Consensus 49 ~~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~ 99 (356)
T 1u94_A 49 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA 99 (356)
T ss_dssp HHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred HHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 3455552 138999999999999999999997776543322 22344554
No 402
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.86 E-value=0.00011 Score=75.83 Aligned_cols=39 Identities=41% Similarity=0.508 Sum_probs=31.7
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCCCCCCc--EEEECCEec
Q 047171 342 DTPTIGLVGSSGSGKSTVISLLERFYDPVKG--NILLDGHKI 381 (1224)
Q Consensus 342 ~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G--~i~~~g~~~ 381 (1224)
++..++|+|++||||||+++.|.+.+++ .| .|.+||..+
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l~~-~g~~~i~~d~~~~ 44 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYLVC-HGIPCYTLDGDNI 44 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhh-CCCcEEEECChHH
Confidence 4568999999999999999999998866 56 666666443
No 403
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.82 E-value=0.00033 Score=76.24 Aligned_cols=41 Identities=27% Similarity=0.356 Sum_probs=23.9
Q ss_pred cEEEEeE-EEEC-CCC----------CC---CCEEEEEcCCCCcHHHHHHHHhcCC
Q 047171 327 EIEFKDV-DFSY-PTR----------PD---TPTIGLVGSSGSGKSTVISLLERFY 367 (1224)
Q Consensus 327 ~i~~~~v-~f~y-~~~----------~~---~~~~~ivG~sGsGKSTl~~ll~~~~ 367 (1224)
.++++|+ +|+| .+. .+ ++.++|+|++||||||+.++|++.+
T Consensus 17 ~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 17 LLETGSLLHSPFDEEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp ---------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred ceEEcceeeEEecCcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 5899999 9999 432 23 6799999999999999999998865
No 404
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=96.80 E-value=0.00059 Score=70.92 Aligned_cols=33 Identities=21% Similarity=0.499 Sum_probs=20.9
Q ss_pred ceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhc
Q 047171 995 IFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIER 1028 (1224)
Q Consensus 995 vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~r 1028 (1224)
+++++|++.++. +|+++|++|+|||||++.+.+
T Consensus 13 ~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 13 VLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp -----------C-EEEEEESTTSSHHHHHHHHHH
T ss_pred HHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhc
Confidence 789999998877 899999999999999999987
No 405
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.79 E-value=0.00011 Score=78.92 Aligned_cols=69 Identities=16% Similarity=0.206 Sum_probs=45.4
Q ss_pred CcEEEEEcCCCCChHHHHHHHh---cccCCCCceE--------EECCccCCCCC-HHHHhcceEEEe------cCCCCCc
Q 047171 1006 GKTVALVGQSGSGKSTIIGLIE---RFYDPQSGSV--------MVDERNIKSYN-LRKLRSCIALVS------QEPTLFA 1067 (1224)
Q Consensus 1006 Ge~vaIVG~SGsGKSTL~~lL~---rl~~p~~G~I--------~idG~di~~~~-~~~lR~~i~~V~------Qdp~LF~ 1067 (1224)
.-.++|+||+||||||+.+.|. |+.-.+.|.+ .-.|.+..+.. ...+.+.+.+.. |+.+++.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g~~~r~~~~~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~v~l~g 88 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALGARYLDTGAMYRIATLAVLRAGADLTDPAAIEKAAADAEIGVGSDPDVDAAFLAG 88 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEECCCTTSCCEEETT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCCcHHHHHHHHHHHcCCCchhhHHHHHHHHhCCEEEeecCCCcEEEECC
Confidence 3489999999999999999998 4444456665 24566665533 445666666666 3444555
Q ss_pred ccHHHHH
Q 047171 1068 GTIRQNI 1074 (1224)
Q Consensus 1068 gTIreNl 1074 (1224)
..|.+||
T Consensus 89 ~~v~~~i 95 (233)
T 3r20_A 89 EDVSSEI 95 (233)
T ss_dssp EECTTGG
T ss_pred eehhhhh
Confidence 5555554
No 406
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=96.74 E-value=0.00073 Score=69.02 Aligned_cols=27 Identities=22% Similarity=0.437 Sum_probs=23.5
Q ss_pred eCCcEEEEEcCCCCChHHHHHHHhccc
Q 047171 1004 EAGKTVALVGQSGSGKSTIIGLIERFY 1030 (1224)
Q Consensus 1004 ~~Ge~vaIVG~SGsGKSTL~~lL~rl~ 1030 (1224)
++|.+|+|+|++|+|||||++.|.+..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999999999864
No 407
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.68 E-value=0.0022 Score=72.85 Aligned_cols=44 Identities=14% Similarity=0.210 Sum_probs=29.5
Q ss_pred ccCCCEEEEeCCCCCC-CHHHHHHHHHHHHHH-cCCCeEEEEeCCc
Q 047171 469 IRDPKILLLDEATSAL-DAESERIVQEALDQA-SQGRTMIIIAHRL 512 (1224)
Q Consensus 469 ~~~~~ililDE~ts~l-D~~~~~~i~~~l~~~-~~~~t~i~i~H~l 512 (1224)
++++++|++||+-.-- |..+...+...+... ..++.+|+++++.
T Consensus 96 ~~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~ 141 (324)
T 1l8q_A 96 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRH 141 (324)
T ss_dssp HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred hcCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 3579999999986632 346666677777654 3466677777643
No 408
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.67 E-value=0.0017 Score=68.08 Aligned_cols=26 Identities=27% Similarity=0.349 Sum_probs=23.3
Q ss_pred cEEEEEcCCCCChHHHHHHHhcccCC
Q 047171 1007 KTVALVGQSGSGKSTIIGLIERFYDP 1032 (1224)
Q Consensus 1007 e~vaIVG~SGsGKSTL~~lL~rl~~p 1032 (1224)
..+.|.||+|+|||||++.+......
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~ 80 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAK 80 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 67999999999999999999987654
No 409
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.66 E-value=0.00075 Score=76.35 Aligned_cols=35 Identities=11% Similarity=0.124 Sum_probs=30.4
Q ss_pred cceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhc
Q 047171 994 MIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIER 1028 (1224)
Q Consensus 994 ~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~r 1028 (1224)
+.|+++.--+++|+.+.|.|++|+||||++.-++.
T Consensus 56 ~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~ 90 (315)
T 3bh0_A 56 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAK 90 (315)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 45777776799999999999999999999877764
No 410
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.65 E-value=0.0011 Score=69.48 Aligned_cols=27 Identities=22% Similarity=0.260 Sum_probs=23.0
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcCCCCC
Q 047171 344 PTIGLVGSSGSGKSTVISLLERFYDPV 370 (1224)
Q Consensus 344 ~~~~ivG~sGsGKSTl~~ll~~~~~~~ 370 (1224)
..+.|.||+|+|||||++.+.......
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~ 81 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKR 81 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 478999999999999999998866443
No 411
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.63 E-value=0.0043 Score=68.85 Aligned_cols=28 Identities=29% Similarity=0.417 Sum_probs=24.7
Q ss_pred EeCCcEEEEEcCCCCChHHHHHHHhccc
Q 047171 1003 IEAGKTVALVGQSGSGKSTIIGLIERFY 1030 (1224)
Q Consensus 1003 I~~Ge~vaIVG~SGsGKSTL~~lL~rl~ 1030 (1224)
++++..+.|.||+|+||||+++.+.+..
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 4567789999999999999999998865
No 412
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.63 E-value=0.0022 Score=72.14 Aligned_cols=31 Identities=13% Similarity=0.263 Sum_probs=26.7
Q ss_pred cEEEEEcCCCCChHHHHHHHhcccCCCCceE
Q 047171 1007 KTVALVGQSGSGKSTIIGLIERFYDPQSGSV 1037 (1224)
Q Consensus 1007 e~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I 1037 (1224)
..+.|+||+|+||||+++.|.+...+..|.+
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~~~~~~ 78 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFDTEEAM 78 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHSCGGGE
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcCCCcce
Confidence 4699999999999999999999887666643
No 413
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.62 E-value=0.00015 Score=77.86 Aligned_cols=69 Identities=16% Similarity=0.189 Sum_probs=44.8
Q ss_pred CEEEEEcCCCCcHHHHHHHHh---cCCCCCCcEEE--------ECCEecCCCC-HHHHhcccEEec------CCCCCCcc
Q 047171 344 PTIGLVGSSGSGKSTVISLLE---RFYDPVKGNIL--------LDGHKIKKLQ-LKWLRSQMGLVN------QEPILFST 405 (1224)
Q Consensus 344 ~~~~ivG~sGsGKSTl~~ll~---~~~~~~~G~i~--------~~g~~~~~~~-~~~~r~~i~~v~------Q~~~lf~~ 405 (1224)
..++|+||+||||||+.+.|. |+...+.|.++ -+|.++.+.. ...+.+++.+.+ |+.+|+..
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g~~~r~~~~~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~v~l~g~ 89 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARALGARYLDTGAMYRIATLAVLRAGADLTDPAAIEKAAADAEIGVGSDPDVDAAFLAGE 89 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEECCCTTSCCEEETTE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCcccCCcHHHHHHHHHHHcCCCchhhHHHHHHHHhCCEEEeecCCCcEEEECCe
Confidence 479999999999999999998 55445666652 2455554432 344555666666 33445555
Q ss_pred cHHHHHh
Q 047171 406 SIKENIL 412 (1224)
Q Consensus 406 ti~~ni~ 412 (1224)
.|.++|+
T Consensus 90 ~v~~~ir 96 (233)
T 3r20_A 90 DVSSEIR 96 (233)
T ss_dssp ECTTGGG
T ss_pred ehhhhhc
Confidence 6655553
No 414
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.60 E-value=0.0028 Score=71.15 Aligned_cols=39 Identities=18% Similarity=0.320 Sum_probs=30.9
Q ss_pred eEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEEC
Q 047171 1000 TLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVD 1040 (1224)
Q Consensus 1000 sl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~id 1040 (1224)
++.++++..+.|.||+|+||||+++++.+... .+-+.++
T Consensus 43 ~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~--~~~i~v~ 81 (301)
T 3cf0_A 43 KFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ--ANFISIK 81 (301)
T ss_dssp HHCCCCCSEEEEECSSSSSHHHHHHHHHHHTT--CEEEEEC
T ss_pred HcCCCCCceEEEECCCCcCHHHHHHHHHHHhC--CCEEEEE
Confidence 34568899999999999999999999998763 3444444
No 415
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.60 E-value=0.00051 Score=79.77 Aligned_cols=28 Identities=21% Similarity=0.339 Sum_probs=24.2
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcCCCCC
Q 047171 343 TPTIGLVGSSGSGKSTVISLLERFYDPV 370 (1224)
Q Consensus 343 ~~~~~ivG~sGsGKSTl~~ll~~~~~~~ 370 (1224)
+..+.|.||+|+|||||++.+.+...+.
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~~~~~~ 72 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLSKLHKK 72 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 4478999999999999999999877554
No 416
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=96.58 E-value=0.003 Score=75.35 Aligned_cols=58 Identities=12% Similarity=0.098 Sum_probs=39.9
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhh
Q 047171 1119 GGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLSTI 1178 (1224)
Q Consensus 1119 GGQrQRlaLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti 1178 (1224)
+.|++....++..+++++++|+......-....+..+.+.+++ .++.+|+|.++.+..
T Consensus 87 ~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~--~~~pvilV~NK~D~~ 144 (456)
T 4dcu_A 87 PFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYR--TKKPVVLAVNKLDNT 144 (456)
T ss_dssp CCHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHHHHHHHHHTT--CCSCEEEEEECC---
T ss_pred HHHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHHHHHHHHHHH--cCCCEEEEEECccch
Confidence 3588888899999999998776655544344445566666654 478899999888765
No 417
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.58 E-value=0.0013 Score=75.24 Aligned_cols=26 Identities=15% Similarity=0.101 Sum_probs=22.7
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHhcC
Q 047171 341 PDTPTIGLVGSSGSGKSTVISLLERF 366 (1224)
Q Consensus 341 ~~~~~~~ivG~sGsGKSTl~~ll~~~ 366 (1224)
+.+..+.|.||+|||||||+..++..
T Consensus 120 ~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 120 ESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp CSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45679999999999999999988774
No 418
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=96.57 E-value=0.0035 Score=67.51 Aligned_cols=125 Identities=18% Similarity=0.162 Sum_probs=66.1
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcccEEecCCCCCCc-ccHHHHHhcCCCCCCHH
Q 047171 343 TPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFS-TSIKENILIGKPGASME 421 (1224)
Q Consensus 343 ~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~-~ti~~ni~~g~~~~~~~ 421 (1224)
+..++++|||||||||++.++........|. ...++++.|.|.... .++.+|+.......-
T Consensus 76 g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~----------------~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~-- 137 (235)
T 3llm_A 76 NSVVIIRGATGCGKTTQVPQFILDDFIQNDR----------------AAECNIVVTQPRRISAVSVAERVAFERGEEP-- 137 (235)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHHHHHHTTC----------------GGGCEEEEEESSHHHHHHHHHHHHHTTTCCT--
T ss_pred CCEEEEEeCCCCCcHHhHHHHHhcchhhcCC----------------CCceEEEEeccchHHHHHHHHHHHHHhcccc--
Confidence 3578999999999999887664321111111 124677777776443 366677643211000
Q ss_pred HHHHHHHHhcHHHHHHhccccccccccC----C---CCCCChHHHHHHHHHHHhccCCCEEEEeCCCC-CCCHHHHHHHH
Q 047171 422 TVVKAAQAANVHDFIMKLNDGYETKVGQ----F---GVQLSGGQKQRIAIARALIRDPKILLLDEATS-ALDAESERIVQ 493 (1224)
Q Consensus 422 ~~~~~~~~~~~~~~i~~l~~g~~t~~~~----~---g~~LSgGq~qriaiARal~~~~~ililDE~ts-~lD~~~~~~i~ 493 (1224)
....|+...... . ..=.+.|.-.+.. +.-+++-+++|+||+-. ++|........
T Consensus 138 ----------------~~~~g~~~~~~~~~~~~~~~Ivv~Tpg~l~~~l--~~~l~~~~~lVlDEah~~~~~~~~~~~~l 199 (235)
T 3llm_A 138 ----------------GKSCGYSVRFESILPRPHASIMFCTVGVLLRKL--EAGIRGISHVIVDEIHERDINTDFLLVVL 199 (235)
T ss_dssp ----------------TSSEEEEETTEEECCCSSSEEEEEEHHHHHHHH--HHCCTTCCEEEECCTTSCCHHHHHHHHHH
T ss_pred ----------------CceEEEeechhhccCCCCCeEEEECHHHHHHHH--HhhhcCCcEEEEECCccCCcchHHHHHHH
Confidence 000122111110 0 0112456665553 34689999999999976 47766553333
Q ss_pred HHHHHHcCCC
Q 047171 494 EALDQASQGR 503 (1224)
Q Consensus 494 ~~l~~~~~~~ 503 (1224)
+.+.....+.
T Consensus 200 ~~i~~~~~~~ 209 (235)
T 3llm_A 200 RDVVQAYPEV 209 (235)
T ss_dssp HHHHHHCTTS
T ss_pred HHHHhhCCCC
Confidence 3333333333
No 419
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.55 E-value=0.00088 Score=68.30 Aligned_cols=26 Identities=38% Similarity=0.425 Sum_probs=23.4
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcCCCC
Q 047171 344 PTIGLVGSSGSGKSTVISLLERFYDP 369 (1224)
Q Consensus 344 ~~~~ivG~sGsGKSTl~~ll~~~~~~ 369 (1224)
..++|+|++||||||++++|++.+.+
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~~ 30 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLNM 30 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTTC
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 47899999999999999999998754
No 420
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.52 E-value=0.0015 Score=70.34 Aligned_cols=28 Identities=18% Similarity=0.177 Sum_probs=24.9
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcccCC
Q 047171 1005 AGKTVALVGQSGSGKSTIIGLIERFYDP 1032 (1224)
Q Consensus 1005 ~Ge~vaIVG~SGsGKSTL~~lL~rl~~p 1032 (1224)
++..+.|+||+|+||||+++.+.+....
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~ 78 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANE 78 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 6889999999999999999999876653
No 421
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=96.48 E-value=0.0006 Score=78.24 Aligned_cols=40 Identities=23% Similarity=0.331 Sum_probs=34.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecC
Q 047171 343 TPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIK 382 (1224)
Q Consensus 343 ~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~ 382 (1224)
+.+++|+|++|||||||++.|.|.+.+.+|+|.+.+.|..
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~ 113 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPS 113 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC-
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCC
Confidence 5589999999999999999999999999998888766654
No 422
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=96.48 E-value=0.001 Score=74.75 Aligned_cols=139 Identities=17% Similarity=0.170 Sum_probs=71.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEE-CCEecCCCCHHHHhcccEEecCCCC--CCcccHHHHHhcCCCCCCHH
Q 047171 345 TIGLVGSSGSGKSTVISLLERFYDPVKGNILL-DGHKIKKLQLKWLRSQMGLVNQEPI--LFSTSIKENILIGKPGASME 421 (1224)
Q Consensus 345 ~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~-~g~~~~~~~~~~~r~~i~~v~Q~~~--lf~~ti~~ni~~g~~~~~~~ 421 (1224)
.++|+|++|+|||||++.|.|.- +.+ .+.+-. ..++..|++.++.. .|-+| |....
T Consensus 10 ~VaIvG~~nvGKSTLln~L~g~~------~~i~s~~~~t-----Tr~~~~gi~~~~~~~i~~iDT---------pG~~~- 68 (301)
T 1ega_A 10 FIAIVGRPNVGKSTLLNKLLGQK------ISITSRKAQT-----TRHRIVGIHTEGAYQAIYVDT---------PGLHM- 68 (301)
T ss_dssp EEEEECSSSSSHHHHHHHHHTCS------EEECCCCSSC-----CSSCEEEEEEETTEEEEEESS---------SSCCH-
T ss_pred EEEEECCCCCCHHHHHHHHHCCC------ccccCCCCCc-----ceeeEEEEEEECCeeEEEEEC---------cCCCc-
Confidence 79999999999999999999863 111 111100 11234677777643 11121 22210
Q ss_pred HHHHHHHHhcHHHHHHhcccc---ccc--cccCCCCCCChHHHHHHHHHHHhc--cCCCEEEEeCCCCCCCHHH-HHHHH
Q 047171 422 TVVKAAQAANVHDFIMKLNDG---YET--KVGQFGVQLSGGQKQRIAIARALI--RDPKILLLDEATSALDAES-ERIVQ 493 (1224)
Q Consensus 422 ~~~~~~~~~~~~~~i~~l~~g---~~t--~~~~~g~~LSgGq~qriaiARal~--~~~~ililDE~ts~lD~~~-~~~i~ 493 (1224)
+...... .++....... .|- .+-+... +|+|++ .+++++. ..|.|+++ +-+|... ...+.
T Consensus 69 ~~~~~l~----~~~~~~~~~~l~~~D~vl~Vvd~~~-~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~ 136 (301)
T 1ega_A 69 EEKRAIN----RLMNKAASSSIGDVELVIFVVEGTR-WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLL 136 (301)
T ss_dssp HHHHHHH----HHHTCCTTSCCCCEEEEEEEEETTC-CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHH
T ss_pred cchhhHH----HHHHHHHHHHHhcCCEEEEEEeCCC-CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHH
Confidence 1111110 0111111111 121 1122223 999987 5566665 67889888 6788765 45565
Q ss_pred HHHHHHcC--C--CeEEEEeCCcchhh
Q 047171 494 EALDQASQ--G--RTMIIIAHRLSTIR 516 (1224)
Q Consensus 494 ~~l~~~~~--~--~t~i~i~H~l~~~~ 516 (1224)
+.+.++.+ + .++.+.+|.-.-+.
T Consensus 137 ~~l~~l~~~~~~~~~i~iSA~~g~~v~ 163 (301)
T 1ega_A 137 PHLQFLASQMNFLDIVPISAETGLNVD 163 (301)
T ss_dssp HHHHHHHTTSCCSEEEECCTTTTTTHH
T ss_pred HHHHHHHHhcCcCceEEEECCCCCCHH
Confidence 66655432 3 24445556554443
No 423
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.47 E-value=0.00099 Score=71.60 Aligned_cols=48 Identities=19% Similarity=0.344 Sum_probs=32.1
Q ss_pred EEEEeEEEECCCCCCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEE
Q 047171 328 IEFKDVDFSYPTRPDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILL 376 (1224)
Q Consensus 328 i~~~~v~f~y~~~~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~ 376 (1224)
+.+.++++.+.....+..++|.|++||||||+++.|...+.+ .+.+..
T Consensus 11 ~~~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~ 58 (229)
T 4eaq_A 11 VDLGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIM 58 (229)
T ss_dssp ---------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEE
T ss_pred cCccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCcee
Confidence 566667776654455779999999999999999999999887 666543
No 424
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.47 E-value=0.0008 Score=85.90 Aligned_cols=47 Identities=17% Similarity=0.268 Sum_probs=39.1
Q ss_pred ceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCC
Q 047171 998 GLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKS 1046 (1224)
Q Consensus 998 ~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~ 1046 (1224)
..++.+++|+.+.++||+|+|||||++++.+... .+-+.+++.++..
T Consensus 503 ~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~--~~~i~v~~~~l~~ 549 (806)
T 1ypw_A 503 FLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ--ANFISIKGPELLT 549 (806)
T ss_dssp TTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHT--CCCCCCCCSSSTT
T ss_pred HHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhC--CCEEEEechHhhh
Confidence 4567889999999999999999999999999875 4567777776643
No 425
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.45 E-value=0.00066 Score=78.00 Aligned_cols=43 Identities=12% Similarity=0.266 Sum_probs=33.4
Q ss_pred CCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchh
Q 047171 1134 NPMILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLST 1177 (1224)
Q Consensus 1134 ~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~t 1177 (1224)
+++|+++|| .-.++......+.+.+++...+..+|+++++...
T Consensus 133 ~~~vliiDE-~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~ 175 (353)
T 1sxj_D 133 PYKIIILDE-ADSMTADAQSALRRTMETYSGVTRFCLICNYVTR 175 (353)
T ss_dssp SCEEEEETT-GGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGG
T ss_pred CceEEEEEC-CCccCHHHHHHHHHHHHhcCCCceEEEEeCchhh
Confidence 567999999 5678888888899999876555567777776654
No 426
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.42 E-value=0.0016 Score=64.90 Aligned_cols=30 Identities=30% Similarity=0.565 Sum_probs=24.5
Q ss_pred eceeEEEeCCcEEEEEcCCCCChHHHHHHHh
Q 047171 997 KGLTLKIEAGKTVALVGQSGSGKSTIIGLIE 1027 (1224)
Q Consensus 997 ~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~ 1027 (1224)
++.++++.+| ..+|+|||||||||++.+|.
T Consensus 15 ~~~~i~f~~g-~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred cceEEEcCCC-eEEEECCCCCCHHHHHHHHH
Confidence 4455566655 88999999999999999986
No 427
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=96.40 E-value=0.0007 Score=76.74 Aligned_cols=45 Identities=13% Similarity=0.141 Sum_probs=37.9
Q ss_pred cccccEEEEeEEEECCCCC-------------------------CCCEEEEEcCCCCcHHHHHHHHhcCC
Q 047171 323 YLRGEIEFKDVDFSYPTRP-------------------------DTPTIGLVGSSGSGKSTVISLLERFY 367 (1224)
Q Consensus 323 ~~~~~i~~~~v~f~y~~~~-------------------------~~~~~~ivG~sGsGKSTl~~ll~~~~ 367 (1224)
..++.+.|+||+|.||... .|++++|+||+|+|||||++.|.++.
T Consensus 129 ~~~~ri~Fe~ltp~yP~er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 129 NARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp HHTTSCCTTTSCEESCCSBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred hhcCCceeccccccCCCCccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 3467899999999998531 24489999999999999999999975
No 428
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.39 E-value=0.00021 Score=75.09 Aligned_cols=69 Identities=20% Similarity=0.351 Sum_probs=37.1
Q ss_pred EEEEEcCCCCChHHHHHHHhcc------cCCCCceEEECCc--cCCCCCH--------HHHhcceEEEecCCCCCcccHH
Q 047171 1008 TVALVGQSGSGKSTIIGLIERF------YDPQSGSVMVDER--NIKSYNL--------RKLRSCIALVSQEPTLFAGTIR 1071 (1224)
Q Consensus 1008 ~vaIVG~SGsGKSTL~~lL~rl------~~p~~G~I~idG~--di~~~~~--------~~lR~~i~~V~Qdp~LF~gTIr 1071 (1224)
.++|+|++||||||+.+.|.+. .+|..|...++.. +-...+. ..++.....+.|+..+++.++.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~vi~d~~~~ 81 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEIFKEPVEENPYFEQYYKDLKKTVFKMQIYMLTARSKQLKQAKNLENIIFDRTLL 81 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEEECCCGGGCTTHHHHTTCHHHHHHHHHHHHHHHHHHHHC------CEEEESCTT
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcEEcccccccHHHHHHHhCccccchhHHHHHHHHHHHHHHHhhccCCEEEEeccc
Confidence 6899999999999999999983 3444343222211 1000000 0022333456666777777777
Q ss_pred HHHcc
Q 047171 1072 QNIVY 1076 (1224)
Q Consensus 1072 eNl~~ 1076 (1224)
+|+.+
T Consensus 82 ~~~~~ 86 (205)
T 2jaq_A 82 EDPIF 86 (205)
T ss_dssp THHHH
T ss_pred hhHHH
Confidence 77654
No 429
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.38 E-value=0.0016 Score=68.29 Aligned_cols=37 Identities=24% Similarity=0.280 Sum_probs=23.4
Q ss_pred EEEEeEEEECCCCCCCCEEEEEcCCCCcHHHHHHHHhcCC
Q 047171 328 IEFKDVDFSYPTRPDTPTIGLVGSSGSGKSTVISLLERFY 367 (1224)
Q Consensus 328 i~~~~v~f~y~~~~~~~~~~ivG~sGsGKSTl~~ll~~~~ 367 (1224)
-..+||+|..+ ++..++|+|++||||||+.+.|++.+
T Consensus 13 ~~~~~~~~~~~---~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 13 LGTENLYFQSN---AMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp --------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCceeEecC---CCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 45678888763 35689999999999999999999876
No 430
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.34 E-value=0.00057 Score=72.48 Aligned_cols=39 Identities=38% Similarity=0.325 Sum_probs=33.5
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCCCCCCc--EEEECCEe
Q 047171 342 DTPTIGLVGSSGSGKSTVISLLERFYDPVKG--NILLDGHK 380 (1224)
Q Consensus 342 ~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G--~i~~~g~~ 380 (1224)
.+..++|+|++||||||+++.|.+.+.|..| .+.++|.+
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~ 64 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDN 64 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChH
Confidence 3458999999999999999999999988888 88887543
No 431
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.34 E-value=0.0016 Score=74.61 Aligned_cols=28 Identities=25% Similarity=0.286 Sum_probs=24.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCc
Q 047171 345 TIGLVGSSGSGKSTVISLLERFYDPVKG 372 (1224)
Q Consensus 345 ~~~ivG~sGsGKSTl~~ll~~~~~~~~G 372 (1224)
.+.+.||+|+||||+++.+++.+.+..+
T Consensus 48 ~~ll~Gp~G~GKTtla~~la~~l~~~~~ 75 (340)
T 1sxj_C 48 HLLFYGPPGTGKTSTIVALAREIYGKNY 75 (340)
T ss_dssp CEEEECSSSSSHHHHHHHHHHHHHTTSH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCc
Confidence 3899999999999999999998766554
No 432
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.31 E-value=0.012 Score=64.09 Aligned_cols=33 Identities=18% Similarity=0.285 Sum_probs=25.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCE
Q 047171 345 TIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGH 379 (1224)
Q Consensus 345 ~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~ 379 (1224)
.+.|+||+|+||||+++.+.+.+... -+.+++.
T Consensus 47 ~vll~G~~GtGKT~la~~la~~~~~~--~~~i~~~ 79 (257)
T 1lv7_A 47 GVLMVGPPGTGKTLLAKAIAGEAKVP--FFTISGS 79 (257)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCC--EEEECSC
T ss_pred eEEEECcCCCCHHHHHHHHHHHcCCC--EEEEeHH
Confidence 58899999999999999999876432 3555543
No 433
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.31 E-value=0.00075 Score=71.11 Aligned_cols=27 Identities=30% Similarity=0.479 Sum_probs=23.9
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCCC
Q 047171 342 DTPTIGLVGSSGSGKSTVISLLERFYD 368 (1224)
Q Consensus 342 ~~~~~~ivG~sGsGKSTl~~ll~~~~~ 368 (1224)
.+..++|+|||||||||+.+.|...++
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 456899999999999999999988764
No 434
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.29 E-value=0.0018 Score=69.45 Aligned_cols=45 Identities=18% Similarity=0.146 Sum_probs=33.9
Q ss_pred cCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhh
Q 047171 1133 KNPMILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLSTI 1178 (1224)
Q Consensus 1133 ~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti 1178 (1224)
.++.+|++||+-. +|.+....+.+.+++...+..+|++|++...+
T Consensus 125 ~~~~vlviDe~~~-l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~ 169 (250)
T 1njg_A 125 GRFKVYLIDEVHM-LSRHSFNALLKTLEEPPEHVKFLLATTDPQKL 169 (250)
T ss_dssp SSSEEEEEETGGG-SCHHHHHHHHHHHHSCCTTEEEEEEESCGGGS
T ss_pred CCceEEEEECccc-ccHHHHHHHHHHHhcCCCceEEEEEeCChHhC
Confidence 4578999999876 78888888888886654566778888876544
No 435
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=96.24 E-value=0.0018 Score=74.63 Aligned_cols=41 Identities=24% Similarity=0.447 Sum_probs=34.6
Q ss_pred EEeCCcEEEEEcCCCCChHHHHHHHhcc-----------cCCCCceEEECCc
Q 047171 1002 KIEAGKTVALVGQSGSGKSTIIGLIERF-----------YDPQSGSVMVDER 1042 (1224)
Q Consensus 1002 ~I~~Ge~vaIVG~SGsGKSTL~~lL~rl-----------~~p~~G~I~idG~ 1042 (1224)
.++.|.+++|||++|+|||||++.|.+. .+|..|.+.++|.
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~ 69 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDE 69 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCH
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCc
Confidence 4567889999999999999999999998 6788898888764
No 436
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.22 E-value=0.0018 Score=66.87 Aligned_cols=32 Identities=19% Similarity=0.392 Sum_probs=26.6
Q ss_pred ceeEEEeCCcEEEEEcCCCCChHHHHHHHhcc
Q 047171 998 GLTLKIEAGKTVALVGQSGSGKSTIIGLIERF 1029 (1224)
Q Consensus 998 ~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl 1029 (1224)
++|++.++|..++|+|++||||||+.+.|...
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 57888899999999999999999999999876
No 437
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.22 E-value=0.00096 Score=69.06 Aligned_cols=41 Identities=34% Similarity=0.438 Sum_probs=33.9
Q ss_pred EEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceE-EECCc
Q 047171 1002 KIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSV-MVDER 1042 (1224)
Q Consensus 1002 ~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I-~idG~ 1042 (1224)
..++|..+.|+|++||||||+.+.|.+.+.+..|.+ .+|+.
T Consensus 9 ~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d 50 (186)
T 2yvu_A 9 CIEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGD 50 (186)
T ss_dssp CCSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHH
Confidence 345789999999999999999999999988776765 45543
No 438
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.15 E-value=0.013 Score=57.81 Aligned_cols=28 Identities=25% Similarity=0.328 Sum_probs=23.7
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcccCC
Q 047171 1005 AGKTVALVGQSGSGKSTIIGLIERFYDP 1032 (1224)
Q Consensus 1005 ~Ge~vaIVG~SGsGKSTL~~lL~rl~~p 1032 (1224)
.+.-|-|.|++|+|||++++.+......
T Consensus 23 ~~~~vll~G~~GtGKt~lA~~i~~~~~~ 50 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGARYLHQFGRN 50 (145)
T ss_dssp CCSCEEEESSTTSSHHHHHHHHHHSSTT
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHhCCc
Confidence 4556999999999999999999876543
No 439
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.13 E-value=0.0022 Score=72.68 Aligned_cols=27 Identities=26% Similarity=0.331 Sum_probs=24.5
Q ss_pred EEeCCcEEEEEcCCCCChHHHHHHHhc
Q 047171 1002 KIEAGKTVALVGQSGSGKSTIIGLIER 1028 (1224)
Q Consensus 1002 ~I~~Ge~vaIVG~SGsGKSTL~~lL~r 1028 (1224)
-+++|+.+.|.|++|+||||++.-+..
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999999987764
No 440
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.06 E-value=0.00054 Score=79.04 Aligned_cols=58 Identities=22% Similarity=0.270 Sum_probs=36.1
Q ss_pred cccEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECC
Q 047171 975 KGFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDE 1041 (1224)
Q Consensus 975 ~g~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG 1041 (1224)
.|.|.++|++..|. ...++++++|+| +|||++|+|||||++.|++...+..|.+..++
T Consensus 15 ~~~v~~~~l~~~~~---~k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~ 72 (361)
T 2qag_A 15 PGYVGFANLPNQVH---RKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERVIPGAA 72 (361)
T ss_dssp ------CCHHHHHH---THHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC----------
T ss_pred CceEEeccchHHhC---CeeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCCCCCcccCCC
Confidence 46789999988884 235789999876 99999999999999999987665555544333
No 441
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.06 E-value=0.0023 Score=68.74 Aligned_cols=27 Identities=22% Similarity=0.191 Sum_probs=23.1
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcCCCC
Q 047171 343 TPTIGLVGSSGSGKSTVISLLERFYDP 369 (1224)
Q Consensus 343 ~~~~~ivG~sGsGKSTl~~ll~~~~~~ 369 (1224)
...+.|.||+|+||||+++.+......
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~~~~~ 78 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACARANE 78 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 458899999999999999999876543
No 442
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.05 E-value=0.002 Score=70.44 Aligned_cols=43 Identities=28% Similarity=0.452 Sum_probs=35.2
Q ss_pred EEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCC
Q 047171 1002 KIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKS 1046 (1224)
Q Consensus 1002 ~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~ 1046 (1224)
..+++..+.|+|++||||||+.+.|.+.+. .|.+.+||-.++.
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~--~~~~~~~~D~~r~ 70 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ--GNIVIIDGDSFRS 70 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTT--TCCEEECGGGGGT
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcC--CCcEEEecHHHHH
Confidence 456678999999999999999999998775 3678888866543
No 443
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.04 E-value=0.0053 Score=69.31 Aligned_cols=30 Identities=17% Similarity=0.306 Sum_probs=27.1
Q ss_pred CChHHHHHHHHHHHhccCCCEEEEeCCCCC
Q 047171 454 LSGGQKQRIAIARALIRDPKILLLDEATSA 483 (1224)
Q Consensus 454 LSgGq~qriaiARal~~~~~ililDE~ts~ 483 (1224)
||++++||++.|...+.++++++.|+|...
T Consensus 134 l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~ 163 (315)
T 3bh0_A 134 FASEDWGKLSMAIGEISNSNINIFDKAGQS 163 (315)
T ss_dssp HCSSCHHHHHHHHHHHHTSCEEEECCSCCB
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEECCCCCC
Confidence 899999999999999999999999998644
No 444
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.04 E-value=0.0021 Score=73.65 Aligned_cols=43 Identities=19% Similarity=0.378 Sum_probs=33.1
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCCcch
Q 047171 471 DPKILLLDEATSALDAESERIVQEALDQASQGRTMIIIAHRLST 514 (1224)
Q Consensus 471 ~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~i~H~l~~ 514 (1224)
++.|+++|| ...+++.....+.+.+++...+..+|+++++.+.
T Consensus 133 ~~~vliiDE-~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~ 175 (353)
T 1sxj_D 133 PYKIIILDE-ADSMTADAQSALRRTMETYSGVTRFCLICNYVTR 175 (353)
T ss_dssp SCEEEEETT-GGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGG
T ss_pred CceEEEEEC-CCccCHHHHHHHHHHHHhcCCCceEEEEeCchhh
Confidence 667999999 6778888888888888776555567777777654
No 445
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.03 E-value=0.0084 Score=66.47 Aligned_cols=24 Identities=25% Similarity=0.307 Sum_probs=21.6
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcCC
Q 047171 344 PTIGLVGSSGSGKSTVISLLERFY 367 (1224)
Q Consensus 344 ~~~~ivG~sGsGKSTl~~ll~~~~ 367 (1224)
..+.|.||+|+||||+++.+++.+
T Consensus 52 ~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 52 KGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp SEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CeEEEECCCCCcHHHHHHHHHHHh
Confidence 368999999999999999998865
No 446
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=96.03 E-value=0.0041 Score=62.70 Aligned_cols=24 Identities=33% Similarity=0.454 Sum_probs=21.7
Q ss_pred cEEEEEcCCCCChHHHHHHHhccc
Q 047171 1007 KTVALVGQSGSGKSTIIGLIERFY 1030 (1224)
Q Consensus 1007 e~vaIVG~SGsGKSTL~~lL~rl~ 1030 (1224)
-+++|+|++|+|||||++.|.+..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCS
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 379999999999999999999864
No 447
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.03 E-value=0.032 Score=65.26 Aligned_cols=35 Identities=29% Similarity=0.496 Sum_probs=27.6
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEE
Q 047171 1005 AGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMV 1039 (1224)
Q Consensus 1005 ~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~i 1039 (1224)
++..++++|++|+||||++.-|...+....-++.+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVll 133 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGV 133 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 35679999999999999999999887754334443
No 448
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.03 E-value=0.013 Score=57.72 Aligned_cols=26 Identities=27% Similarity=0.420 Sum_probs=22.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCC
Q 047171 345 TIGLVGSSGSGKSTVISLLERFYDPV 370 (1224)
Q Consensus 345 ~~~ivG~sGsGKSTl~~ll~~~~~~~ 370 (1224)
.+.|.||+|+|||++++.|.......
T Consensus 26 ~vll~G~~GtGKt~lA~~i~~~~~~~ 51 (145)
T 3n70_A 26 AVWLYGAPGTGRMTGARYLHQFGRNA 51 (145)
T ss_dssp CEEEESSTTSSHHHHHHHHHHSSTTT
T ss_pred CEEEECCCCCCHHHHHHHHHHhCCcc
Confidence 46899999999999999998875543
No 449
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.00 E-value=0.0023 Score=67.16 Aligned_cols=35 Identities=26% Similarity=0.429 Sum_probs=28.6
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccC
Q 047171 1006 GKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNI 1044 (1224)
Q Consensus 1006 Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di 1044 (1224)
...++|+|++||||||+.+.|.+.+ |...+|+-++
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l----g~~~i~~d~~ 52 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC----GYPFIEGDAL 52 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH----TCCEEEGGGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh----CCEEEeCCcC
Confidence 4579999999999999999998876 5566766443
No 450
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.99 E-value=0.00038 Score=73.07 Aligned_cols=23 Identities=30% Similarity=0.563 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 047171 345 TIGLVGSSGSGKSTVISLLERFY 367 (1224)
Q Consensus 345 ~~~ivG~sGsGKSTl~~ll~~~~ 367 (1224)
.++|+|++||||||+.+.|...+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 58999999999999999998843
No 451
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=95.95 E-value=0.013 Score=63.52 Aligned_cols=58 Identities=12% Similarity=0.117 Sum_probs=35.6
Q ss_pred hHHHHHHHHHHHHc---cCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC----CCeEEEEccCchh
Q 047171 1119 GGQKQRIALARAVL---KNPMILLLDEATSALDSASENLVQEALEKMMV----GRTCVVVAHRLST 1177 (1224)
Q Consensus 1119 GGQrQRlaLARAll---~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~----~~TvI~IaHrl~t 1177 (1224)
.|++.+-.+.|++. ++++++|+--..+.++. .+..+.+.+.+.+. ++++|+++|..+.
T Consensus 87 ~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~~~~-~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl 151 (247)
T 3lxw_A 87 KTDPGCEERGHCYLLSAPGPHALLLVTQLGRFTA-QDQQAVRQVRDMFGEDVLKWMVIVFTRKEDL 151 (247)
T ss_dssp HHSTTSHHHHHHHHHHTTCCSEEEEEEETTBCCH-HHHHHHHHHHHHHCGGGGGGEEEEEECGGGG
T ss_pred cHHHHHHHHHHHHHhcCCCCCEEEEEEeCCCCCH-HHHHHHHHHHHHhChhhhccEEEEEEchHhc
Confidence 34555556777764 78887765544445554 44455555655442 5789999996543
No 452
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=95.93 E-value=0.0063 Score=61.33 Aligned_cols=24 Identities=33% Similarity=0.443 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 047171 345 TIGLVGSSGSGKSTVISLLERFYD 368 (1224)
Q Consensus 345 ~~~ivG~sGsGKSTl~~ll~~~~~ 368 (1224)
.++|+|++|+|||||++.+.|...
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~~ 28 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGENV 28 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCe
Confidence 689999999999999999998643
No 453
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=95.90 E-value=0.011 Score=69.98 Aligned_cols=129 Identities=12% Similarity=0.098 Sum_probs=70.1
Q ss_pred cceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCc-eE-EECCccCCCCCHHHHhcceE----EEecCCCCCc
Q 047171 994 MIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSG-SV-MVDERNIKSYNLRKLRSCIA----LVSQEPTLFA 1067 (1224)
Q Consensus 994 ~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G-~I-~idG~di~~~~~~~lR~~i~----~V~Qdp~LF~ 1067 (1224)
+-|+.+.--+++|+.+.|.||+|+||||++.-++.-.....| .+ +++. +.+.+.+..++- -++.+. +.+
T Consensus 188 ~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~sl----E~~~~~l~~R~~~~~~~i~~~~-l~~ 262 (444)
T 2q6t_A 188 KELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSL----EMPAAQLTLRMMCSEARIDMNR-VRL 262 (444)
T ss_dssp HHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES----SSCHHHHHHHHHHHHTTCCTTT-CCG
T ss_pred HhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEC----CCCHHHHHHHHHHHHcCCCHHH-HhC
Confidence 357777766999999999999999999999877765543223 23 3322 234444443321 111111 101
Q ss_pred ccHHHHHccCCCCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHcc--CCCEEEEeccCC
Q 047171 1068 GTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLK--NPMILLLDEATS 1145 (1224)
Q Consensus 1068 gTIreNl~~~~~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll~--~p~ILlLDEaTS 1145 (1224)
...++++.....+. .+.+...|- .+.+ ...+|..+ ..+.+|.+.+ +++++++|..+.
T Consensus 263 -----------g~l~~~~~~~~~~a---~~~l~~~~l----~i~d-~~~~s~~~--l~~~~~~l~~~~~~~lIvID~l~~ 321 (444)
T 2q6t_A 263 -----------GQLTDRDFSRLVDV---ASRLSEAPI----YIDD-TPDLTLME--VRARARRLVSQNQVGLIIIDYLQL 321 (444)
T ss_dssp -----------GGCCHHHHHHHHHH---HHHHHTSCE----EEEC-CTTCBHHH--HHHHHHHHHHHSCCCEEEEECGGG
T ss_pred -----------CCCCHHHHHHHHHH---HHHHhcCCE----EEEC-CCCCCHHH--HHHHHHHHHHHcCCCEEEEcChhh
Confidence 12345553332222 122332221 1211 13466654 4566676663 689999999886
Q ss_pred CCC
Q 047171 1146 ALD 1148 (1224)
Q Consensus 1146 aLD 1148 (1224)
-.+
T Consensus 322 ~~~ 324 (444)
T 2q6t_A 322 MSG 324 (444)
T ss_dssp CBC
T ss_pred cCC
Confidence 554
No 454
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=95.89 E-value=0.0034 Score=64.12 Aligned_cols=37 Identities=19% Similarity=0.290 Sum_probs=29.6
Q ss_pred cEEEEEcCCCCChHHHHHHHhcccCCC---CceEEECCcc
Q 047171 1007 KTVALVGQSGSGKSTIIGLIERFYDPQ---SGSVMVDERN 1043 (1224)
Q Consensus 1007 e~vaIVG~SGsGKSTL~~lL~rl~~p~---~G~I~idG~d 1043 (1224)
..++|+|+|||||||+++.|.+.+.+. -|.|..++.+
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~~ 46 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHD 46 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCCc
Confidence 579999999999999999999876543 3677777644
No 455
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=95.88 E-value=0.0049 Score=62.75 Aligned_cols=25 Identities=20% Similarity=0.302 Sum_probs=22.5
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcCC
Q 047171 343 TPTIGLVGSSGSGKSTVISLLERFY 367 (1224)
Q Consensus 343 ~~~~~ivG~sGsGKSTl~~ll~~~~ 367 (1224)
+..++|+|++|+|||||++.+.|..
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4589999999999999999999864
No 456
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=95.87 E-value=0.0035 Score=64.53 Aligned_cols=22 Identities=36% Similarity=0.548 Sum_probs=20.6
Q ss_pred EEEEEcCCCCChHHHHHHHhcc
Q 047171 1008 TVALVGQSGSGKSTIIGLIERF 1029 (1224)
Q Consensus 1008 ~vaIVG~SGsGKSTL~~lL~rl 1029 (1224)
+++++|++|+|||||++.|.+-
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6999999999999999999984
No 457
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=95.87 E-value=0.0021 Score=68.95 Aligned_cols=45 Identities=16% Similarity=0.250 Sum_probs=32.5
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCCcchh
Q 047171 470 RDPKILLLDEATSALDAESERIVQEALDQASQGRTMIIIAHRLSTI 515 (1224)
Q Consensus 470 ~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~i~H~l~~~ 515 (1224)
.+|.++++||+-. +|......+.+.+++...+..+|++|++...+
T Consensus 125 ~~~~vlviDe~~~-l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~ 169 (250)
T 1njg_A 125 GRFKVYLIDEVHM-LSRHSFNALLKTLEEPPEHVKFLLATTDPQKL 169 (250)
T ss_dssp SSSEEEEEETGGG-SCHHHHHHHHHHHHSCCTTEEEEEEESCGGGS
T ss_pred CCceEEEEECccc-ccHHHHHHHHHHHhcCCCceEEEEEeCChHhC
Confidence 4678999999865 68777777777775544566778888876544
No 458
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=95.84 E-value=0.003 Score=64.53 Aligned_cols=38 Identities=26% Similarity=0.320 Sum_probs=29.2
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcCCCCC---CcEEEECCEe
Q 047171 343 TPTIGLVGSSGSGKSTVISLLERFYDPV---KGNILLDGHK 380 (1224)
Q Consensus 343 ~~~~~ivG~sGsGKSTl~~ll~~~~~~~---~G~i~~~g~~ 380 (1224)
.+.++|+|+||||||||++.|.+.+.+. -|.|..++++
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~~ 46 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHD 46 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCCc
Confidence 3478999999999999999999876543 3666666544
No 459
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=95.83 E-value=0.021 Score=63.96 Aligned_cols=26 Identities=15% Similarity=0.296 Sum_probs=22.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcCCC
Q 047171 343 TPTIGLVGSSGSGKSTVISLLERFYD 368 (1224)
Q Consensus 343 ~~~~~ivG~sGsGKSTl~~ll~~~~~ 368 (1224)
...+.|.||+|+||||+++.+++...
T Consensus 49 ~~~vLL~Gp~GtGKT~la~ala~~~~ 74 (301)
T 3cf0_A 49 SKGVLFYGPPGCGKTLLAKAIANECQ 74 (301)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred CceEEEECCCCcCHHHHHHHHHHHhC
Confidence 34789999999999999999998763
No 460
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=95.82 E-value=0.014 Score=65.48 Aligned_cols=30 Identities=17% Similarity=0.286 Sum_probs=26.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCcEE
Q 047171 345 TIGLVGSSGSGKSTVISLLERFYDPVKGNI 374 (1224)
Q Consensus 345 ~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i 374 (1224)
.+.|+||+|+||||+++.|.+...+..|.+
T Consensus 49 ~~ll~G~~GtGKt~la~~la~~~~~~~~~~ 78 (311)
T 4fcw_A 49 SFLFLGPTGVGKTELAKTLAATLFDTEEAM 78 (311)
T ss_dssp EEEEESCSSSSHHHHHHHHHHHHHSCGGGE
T ss_pred EEEEECCCCcCHHHHHHHHHHHHcCCCcce
Confidence 689999999999999999999887766643
No 461
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=95.77 E-value=0.013 Score=67.47 Aligned_cols=41 Identities=27% Similarity=0.433 Sum_probs=31.7
Q ss_pred eCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccC
Q 047171 1004 EAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNI 1044 (1224)
Q Consensus 1004 ~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di 1044 (1224)
.+|..+-|.||+|+||||+++.+.+.......-+.+++..+
T Consensus 68 ~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~ 108 (368)
T 3uk6_A 68 IAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEI 108 (368)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhh
Confidence 45678999999999999999999988764444555655443
No 462
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=95.76 E-value=0.0052 Score=63.20 Aligned_cols=22 Identities=36% Similarity=0.548 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 047171 345 TIGLVGSSGSGKSTVISLLERF 366 (1224)
Q Consensus 345 ~~~ivG~sGsGKSTl~~ll~~~ 366 (1224)
.++++|++|+|||||++.+.+.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7899999999999999999984
No 463
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.72 E-value=0.028 Score=64.26 Aligned_cols=27 Identities=22% Similarity=0.262 Sum_probs=22.4
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHhcCC
Q 047171 341 PDTPTIGLVGSSGSGKSTVISLLERFY 367 (1224)
Q Consensus 341 ~~~~~~~ivG~sGsGKSTl~~ll~~~~ 367 (1224)
+.+..+.|.|++|||||||+.-++...
T Consensus 61 ~~G~ii~I~G~pGsGKTtLal~la~~~ 87 (356)
T 1u94_A 61 PMGRIVEIYGPESSGKTTLTLQVIAAA 87 (356)
T ss_dssp ETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 456799999999999999997776543
No 464
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=95.71 E-value=0.021 Score=61.84 Aligned_cols=24 Identities=29% Similarity=0.303 Sum_probs=21.7
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcCC
Q 047171 344 PTIGLVGSSGSGKSTVISLLERFY 367 (1224)
Q Consensus 344 ~~~~ivG~sGsGKSTl~~ll~~~~ 367 (1224)
..++|||++|+|||||++.|+|.-
T Consensus 22 l~I~lvG~~g~GKSSlin~l~~~~ 45 (247)
T 3lxw_A 22 RRLILVGRTGAGKSATGNSILGQR 45 (247)
T ss_dssp EEEEEESSTTSSHHHHHHHHHTSC
T ss_pred eEEEEECCCCCcHHHHHHHHhCCC
Confidence 379999999999999999999864
No 465
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=95.68 E-value=0.033 Score=64.00 Aligned_cols=26 Identities=31% Similarity=0.359 Sum_probs=22.7
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccc
Q 047171 1005 AGKTVALVGQSGSGKSTIIGLIERFY 1030 (1224)
Q Consensus 1005 ~Ge~vaIVG~SGsGKSTL~~lL~rl~ 1030 (1224)
+...+.|.||+|+||||+++.+.+..
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHc
Confidence 45579999999999999999998765
No 466
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=95.67 E-value=0.006 Score=72.74 Aligned_cols=55 Identities=11% Similarity=0.146 Sum_probs=36.4
Q ss_pred hHHHHHHHHHHHhccCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHcCCCeEEEEeCCcc
Q 047171 456 GGQKQRIAIARALIRDPKILLLDEATS-ALDAESERIVQEALDQASQGRTMIIIAHRLS 513 (1224)
Q Consensus 456 gGq~qriaiARal~~~~~ililDE~ts-~lD~~~~~~i~~~l~~~~~~~t~i~i~H~l~ 513 (1224)
+.|++....++..+.+++++|+..... .+.... ..+.+.+++ .++.+|++.++.+
T Consensus 87 ~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d-~~l~~~l~~--~~~pvilV~NK~D 142 (456)
T 4dcu_A 87 PFLAQIRQQAEIAMDEADVIIFMVNGREGVTAAD-EEVAKILYR--TKKPVVLAVNKLD 142 (456)
T ss_dssp CCHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHH-HHHHHHHTT--CCSCEEEEEECC-
T ss_pred HHHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHH-HHHHHHHHH--cCCCEEEEEECcc
Confidence 347888888888889998887765544 344443 445555533 4778888887665
No 467
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.63 E-value=0.0084 Score=69.41 Aligned_cols=28 Identities=29% Similarity=0.481 Sum_probs=24.5
Q ss_pred eCCcEEEEEcCCCCChHHHHHHHhcccC
Q 047171 1004 EAGKTVALVGQSGSGKSTIIGLIERFYD 1031 (1224)
Q Consensus 1004 ~~Ge~vaIVG~SGsGKSTL~~lL~rl~~ 1031 (1224)
..+..+.|.||+|+||||+++.+.+...
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~ 69 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLE 69 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 4567899999999999999999988764
No 468
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=95.62 E-value=0.047 Score=59.33 Aligned_cols=26 Identities=23% Similarity=0.326 Sum_probs=22.4
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccc
Q 047171 1005 AGKTVALVGQSGSGKSTIIGLIERFY 1030 (1224)
Q Consensus 1005 ~Ge~vaIVG~SGsGKSTL~~lL~rl~ 1030 (1224)
+...+.|.||+|+||||+++.+.+..
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHh
Confidence 34568999999999999999998765
No 469
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=95.57 E-value=0.0026 Score=66.69 Aligned_cols=31 Identities=35% Similarity=0.529 Sum_probs=25.4
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECC
Q 047171 344 PTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDG 378 (1224)
Q Consensus 344 ~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g 378 (1224)
..++|+|++||||||+++.|.+.+ |...+++
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~l----g~~~i~~ 49 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEAC----GYPFIEG 49 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHHH----TCCEEEG
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh----CCEEEeC
Confidence 479999999999999999998876 4445554
No 470
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=95.52 E-value=0.006 Score=62.73 Aligned_cols=25 Identities=28% Similarity=0.559 Sum_probs=21.1
Q ss_pred EEEEEcCCCCChHHHHHHHhcccCC
Q 047171 1008 TVALVGQSGSGKSTIIGLIERFYDP 1032 (1224)
Q Consensus 1008 ~vaIVG~SGsGKSTL~~lL~rl~~p 1032 (1224)
+|+|+|++|+|||||++.+.+...+
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~~~ 28 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTKKS 28 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC---
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCc
Confidence 7999999999999999999987544
No 471
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.51 E-value=0.0058 Score=63.02 Aligned_cols=45 Identities=27% Similarity=0.544 Sum_probs=33.4
Q ss_pred EEEEcCCCCChHHHHHHHhccc-------------CCCCceEEECCccCCCCCHHHHhcc
Q 047171 1009 VALVGQSGSGKSTIIGLIERFY-------------DPQSGSVMVDERNIKSYNLRKLRSC 1055 (1224)
Q Consensus 1009 vaIVG~SGsGKSTL~~lL~rl~-------------~p~~G~I~idG~di~~~~~~~lR~~ 1055 (1224)
+.|+||||||||||++.|+.-+ +|-.|+ +||+|.-=++.++..+.
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~pR~gE--~~G~dY~Fvs~~eF~~~ 61 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGE--VNGKDYNFVSVDEFKSM 61 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCCCTTC--CBTTTBEECCHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCCCCCC--cCCceeEeecHHHHHHH
Confidence 7899999999999999887543 234565 48888777777666543
No 472
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=95.47 E-value=0.0058 Score=64.04 Aligned_cols=21 Identities=48% Similarity=0.789 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 047171 345 TIGLVGSSGSGKSTVISLLER 365 (1224)
Q Consensus 345 ~~~ivG~sGsGKSTl~~ll~~ 365 (1224)
.++|+|++||||||+++.|.+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999999
No 473
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.46 E-value=0.005 Score=63.58 Aligned_cols=33 Identities=24% Similarity=0.319 Sum_probs=28.6
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEE
Q 047171 342 DTPTIGLVGSSGSGKSTVISLLERFYDPVKGNI 374 (1224)
Q Consensus 342 ~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i 374 (1224)
.+..+.|+|++||||||+++.|.+.+.+..|.+
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~ 44 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQKEGYRV 44 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeE
Confidence 455899999999999999999999887776665
No 474
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.43 E-value=0.076 Score=62.06 Aligned_cols=27 Identities=33% Similarity=0.630 Sum_probs=23.6
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcCCCCC
Q 047171 344 PTIGLVGSSGSGKSTVISLLERFYDPV 370 (1224)
Q Consensus 344 ~~~~ivG~sGsGKSTl~~ll~~~~~~~ 370 (1224)
.+++++|++||||||++.-|+..+...
T Consensus 101 ~vIlivG~~G~GKTTt~~kLA~~l~~~ 127 (443)
T 3dm5_A 101 TILLMVGIQGSGKTTTVAKLARYFQKR 127 (443)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred eEEEEECcCCCCHHHHHHHHHHHHHHC
Confidence 488999999999999999998877653
No 475
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=95.42 E-value=0.007 Score=63.44 Aligned_cols=21 Identities=33% Similarity=0.635 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 047171 1008 TVALVGQSGSGKSTIIGLIER 1028 (1224)
Q Consensus 1008 ~vaIVG~SGsGKSTL~~lL~r 1028 (1224)
+++|+|++||||||+.+.|.+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 699999999999999999999
No 476
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=95.36 E-value=0.0081 Score=63.09 Aligned_cols=30 Identities=30% Similarity=0.565 Sum_probs=24.0
Q ss_pred eceeEEEeCCcEEEEEcCCCCChHHHHHHHh
Q 047171 997 KGLTLKIEAGKTVALVGQSGSGKSTIIGLIE 1027 (1224)
Q Consensus 997 ~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~ 1027 (1224)
++.++++.+| ..+|+|||||||||++.+|.
T Consensus 15 ~~~~i~f~~~-~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred cceEEEeCCC-eEEEEcCCCCCHHHHHHHHH
Confidence 3455566554 89999999999999999874
No 477
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=95.36 E-value=0.0077 Score=61.91 Aligned_cols=26 Identities=31% Similarity=0.498 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCC
Q 047171 345 TIGLVGSSGSGKSTVISLLERFYDPV 370 (1224)
Q Consensus 345 ~~~ivG~sGsGKSTl~~ll~~~~~~~ 370 (1224)
+++|+|++|+|||||++.+.+...+.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~~~~ 29 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTKKSD 29 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC----
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCcc
Confidence 68999999999999999999975443
No 478
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=95.34 E-value=0.0089 Score=68.91 Aligned_cols=36 Identities=31% Similarity=0.495 Sum_probs=28.7
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcC-----------CCCCCcEEEECC
Q 047171 343 TPTIGLVGSSGSGKSTVISLLERF-----------YDPVKGNILLDG 378 (1224)
Q Consensus 343 ~~~~~ivG~sGsGKSTl~~ll~~~-----------~~~~~G~i~~~g 378 (1224)
+..++|||++|+|||||++.|+|. .+|+.|.+.++|
T Consensus 22 ~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~ 68 (396)
T 2ohf_A 22 SLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPD 68 (396)
T ss_dssp CCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECC
Confidence 458999999999999999999997 556667766654
No 479
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=95.28 E-value=0.028 Score=62.61 Aligned_cols=28 Identities=21% Similarity=0.297 Sum_probs=25.2
Q ss_pred EEEeCCcEEEEEcCCCCChHHHHHHHhc
Q 047171 1001 LKIEAGKTVALVGQSGSGKSTIIGLIER 1028 (1224)
Q Consensus 1001 l~I~~Ge~vaIVG~SGsGKSTL~~lL~r 1028 (1224)
-.+++|..+.|.||.|+|||||...+..
T Consensus 118 GGi~~gsviLI~GpPGsGKTtLAlqlA~ 145 (331)
T 2vhj_A 118 GHRYASGMVIVTGKGNSGKTPLVHALGE 145 (331)
T ss_dssp TEEEESEEEEEECSCSSSHHHHHHHHHH
T ss_pred CCCCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 4688999999999999999999988875
No 480
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=95.25 E-value=0.0047 Score=70.60 Aligned_cols=39 Identities=21% Similarity=0.302 Sum_probs=32.9
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEe
Q 047171 342 DTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHK 380 (1224)
Q Consensus 342 ~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~ 380 (1224)
.+.+++|+|++|+||||+++.|++.+.+..|++.+-+.|
T Consensus 55 ~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d 93 (341)
T 2p67_A 55 NTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVD 93 (341)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeec
Confidence 356899999999999999999999998888877664444
No 481
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=95.21 E-value=0.0093 Score=59.22 Aligned_cols=20 Identities=30% Similarity=0.534 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 047171 345 TIGLVGSSGSGKSTVISLLE 364 (1224)
Q Consensus 345 ~~~ivG~sGsGKSTl~~ll~ 364 (1224)
..+|+|||||||||++.+|.
T Consensus 25 ~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 78999999999999999986
No 482
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.20 E-value=0.0026 Score=71.95 Aligned_cols=37 Identities=38% Similarity=0.451 Sum_probs=33.6
Q ss_pred cceeceeEEEeCCcE--EEEEcCCCCChHHHHHHHhccc
Q 047171 994 MIFKGLTLKIEAGKT--VALVGQSGSGKSTIIGLIERFY 1030 (1224)
Q Consensus 994 ~vL~~isl~I~~Ge~--vaIVG~SGsGKSTL~~lL~rl~ 1030 (1224)
.+++++++.+++|+. ++|+|++||||||+.++|.+.+
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 378899999999999 9999999999999999998864
No 483
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.20 E-value=0.094 Score=58.56 Aligned_cols=26 Identities=19% Similarity=0.392 Sum_probs=22.3
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcccC
Q 047171 1006 GKTVALVGQSGSGKSTIIGLIERFYD 1031 (1224)
Q Consensus 1006 Ge~vaIVG~SGsGKSTL~~lL~rl~~ 1031 (1224)
+..+.|.||+|+||||+++.+.+.+.
T Consensus 67 ~~~vll~G~~GtGKT~la~~la~~l~ 92 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVALKMAGLLH 92 (309)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH
Confidence 45699999999999999998887763
No 484
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=95.19 E-value=0.013 Score=60.30 Aligned_cols=35 Identities=31% Similarity=0.515 Sum_probs=26.9
Q ss_pred EEEEEcCCCCChHHHHHHHh-cc----cCCCCc----eEEECCc
Q 047171 1008 TVALVGQSGSGKSTIIGLIE-RF----YDPQSG----SVMVDER 1042 (1224)
Q Consensus 1008 ~vaIVG~SGsGKSTL~~lL~-rl----~~p~~G----~I~idG~ 1042 (1224)
+|+|+|++|+|||||++.+. +. +.|+.| .+.++|.
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~~ 65 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQ 65 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETTE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECCE
Confidence 69999999999999996554 43 566666 5666664
No 485
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.19 E-value=0.065 Score=61.42 Aligned_cols=28 Identities=25% Similarity=0.343 Sum_probs=24.4
Q ss_pred EEeCCcEEEEEcCCCCChHHHHHHHhcc
Q 047171 1002 KIEAGKTVALVGQSGSGKSTIIGLIERF 1029 (1224)
Q Consensus 1002 ~I~~Ge~vaIVG~SGsGKSTL~~lL~rl 1029 (1224)
-+++|+.+.|.||+|+|||||..-+..-
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~ 97 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQ 97 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHH
Confidence 4799999999999999999999766543
No 486
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=95.19 E-value=0.012 Score=67.03 Aligned_cols=36 Identities=28% Similarity=0.534 Sum_probs=31.0
Q ss_pred CcEEEEEcCCCCChHHHHHHHhc-----------ccCCCCceEEECC
Q 047171 1006 GKTVALVGQSGSGKSTIIGLIER-----------FYDPQSGSVMVDE 1041 (1224)
Q Consensus 1006 Ge~vaIVG~SGsGKSTL~~lL~r-----------l~~p~~G~I~idG 1041 (1224)
|-+++|||++|+|||||++.|.+ -.+|..|.+.+++
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~ 48 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD 48 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence 56899999999999999999998 3467788888766
No 487
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=95.17 E-value=0.018 Score=59.19 Aligned_cols=35 Identities=34% Similarity=0.627 Sum_probs=26.0
Q ss_pred EEEEEcCCCCcHHHHHHHH-hcC----CCCCCc----EEEECCE
Q 047171 345 TIGLVGSSGSGKSTVISLL-ERF----YDPVKG----NILLDGH 379 (1224)
Q Consensus 345 ~~~ivG~sGsGKSTl~~ll-~~~----~~~~~G----~i~~~g~ 379 (1224)
.++|+|++|+|||||++.+ .+. +.|+.| .+.++|.
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~~ 65 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQ 65 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETTE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECCE
Confidence 7899999999999999655 444 567766 4555553
No 488
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=95.17 E-value=0.007 Score=65.99 Aligned_cols=37 Identities=27% Similarity=0.518 Sum_probs=30.0
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecC
Q 047171 344 PTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIK 382 (1224)
Q Consensus 344 ~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~ 382 (1224)
..+.|+|++||||||+.+.|.+.+. .|.+.++|-.++
T Consensus 33 ~~i~l~G~~GsGKSTla~~L~~~l~--~~~~~~~~D~~r 69 (253)
T 2p5t_B 33 IAILLGGQSGAGKTTIHRIKQKEFQ--GNIVIIDGDSFR 69 (253)
T ss_dssp EEEEEESCGGGTTHHHHHHHHHHTT--TCCEEECGGGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC--CCcEEEecHHHH
Confidence 4789999999999999999998775 356777775543
No 489
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.16 E-value=0.021 Score=60.64 Aligned_cols=51 Identities=16% Similarity=0.222 Sum_probs=34.1
Q ss_pred CCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccC-----------chhhhhcCEEEEEe
Q 047171 1134 NPMILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHR-----------LSTIQKADNIVVIK 1188 (1224)
Q Consensus 1134 ~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHr-----------l~ti~~aD~I~vl~ 1188 (1224)
+++++++||+-- ++.+.-+.+ +.+.. .+.+||++-|+ .+.+..||+|.-|.
T Consensus 89 ~~dvViIDEaQ~-l~~~~ve~l-~~L~~--~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDDRICEVA-NILAE--NGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TCCEEEECSGGG-SCTHHHHHH-HHHHH--TTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEecCcc-CcHHHHHHH-HHHHh--CCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 589999999974 665533333 22333 38899999993 22345699998864
No 490
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=95.13 E-value=0.055 Score=56.73 Aligned_cols=44 Identities=18% Similarity=0.267 Sum_probs=31.1
Q ss_pred cCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchh
Q 047171 1133 KNPMILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLST 1177 (1224)
Q Consensus 1133 ~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~t 1177 (1224)
.++.+|++||+-. ++.+....+.+.+++...+..+|++|.+...
T Consensus 101 ~~~~vliiDe~~~-l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~ 144 (226)
T 2chg_A 101 APFKIIFLDEADA-LTADAQAALRRTMEMYSKSCRFILSCNYVSR 144 (226)
T ss_dssp CSCEEEEEETGGG-SCHHHHHHHHHHHHHTTTTEEEEEEESCGGG
T ss_pred cCceEEEEeChhh-cCHHHHHHHHHHHHhcCCCCeEEEEeCChhh
Confidence 3678999999754 6777777788888765455566666766543
No 491
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=95.08 E-value=0.013 Score=65.36 Aligned_cols=33 Identities=27% Similarity=0.410 Sum_probs=28.8
Q ss_pred ceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhc
Q 047171 995 IFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIER 1028 (1224)
Q Consensus 995 vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~r 1028 (1224)
.+++..+.+ .|.-++|+|+||+||||++..|.+
T Consensus 134 ~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~ 166 (314)
T 1ko7_A 134 SLHGVLVDV-YGVGVLITGDSGIGKSETALELIK 166 (314)
T ss_dssp EEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred eeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHh
Confidence 567777777 789999999999999999998887
No 492
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=95.01 E-value=0.035 Score=63.87 Aligned_cols=36 Identities=17% Similarity=0.311 Sum_probs=27.9
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECC
Q 047171 343 TPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDG 378 (1224)
Q Consensus 343 ~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g 378 (1224)
+..+.|.||+|+||||+++.+.........-+.+++
T Consensus 70 ~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~ 105 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAG 105 (368)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEG
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccc
Confidence 347899999999999999999988764434444544
No 493
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=95.01 E-value=0.04 Score=63.22 Aligned_cols=24 Identities=25% Similarity=0.318 Sum_probs=21.6
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcCC
Q 047171 344 PTIGLVGSSGSGKSTVISLLERFY 367 (1224)
Q Consensus 344 ~~~~ivG~sGsGKSTl~~ll~~~~ 367 (1224)
..+.|.||+|+||||+++.++...
T Consensus 118 ~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 118 KGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SEEEEESSTTSSHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHc
Confidence 478999999999999999998765
No 494
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.00 E-value=0.011 Score=60.20 Aligned_cols=26 Identities=27% Similarity=0.432 Sum_probs=23.5
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcccC
Q 047171 1006 GKTVALVGQSGSGKSTIIGLIERFYD 1031 (1224)
Q Consensus 1006 Ge~vaIVG~SGsGKSTL~~lL~rl~~ 1031 (1224)
|..+.|+|++||||||+.+.|...+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 57899999999999999999998764
No 495
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=94.98 E-value=0.0096 Score=61.24 Aligned_cols=27 Identities=26% Similarity=0.507 Sum_probs=23.5
Q ss_pred eCCcEEEEEcCCCCChHHHHHHHhccc
Q 047171 1004 EAGKTVALVGQSGSGKSTIIGLIERFY 1030 (1224)
Q Consensus 1004 ~~Ge~vaIVG~SGsGKSTL~~lL~rl~ 1030 (1224)
.+|..++|+|++||||||+.+.|...+
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999999998644
No 496
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=94.91 E-value=0.12 Score=58.39 Aligned_cols=27 Identities=22% Similarity=0.314 Sum_probs=23.8
Q ss_pred eCCcEEEEEcCCCCChHHHHHHHhccc
Q 047171 1004 EAGKTVALVGQSGSGKSTIIGLIERFY 1030 (1224)
Q Consensus 1004 ~~Ge~vaIVG~SGsGKSTL~~lL~rl~ 1030 (1224)
.|..-+.|.||+|+|||++++.+.+..
T Consensus 43 ~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 43 TPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCccHHHHHHHHHHHc
Confidence 455679999999999999999999865
No 497
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=94.90 E-value=0.059 Score=58.53 Aligned_cols=24 Identities=21% Similarity=0.257 Sum_probs=21.2
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcCC
Q 047171 344 PTIGLVGSSGSGKSTVISLLERFY 367 (1224)
Q Consensus 344 ~~~~ivG~sGsGKSTl~~ll~~~~ 367 (1224)
..+.|.||+|+||||+++.+.+.+
T Consensus 40 ~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 40 KGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 367899999999999999998754
No 498
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=94.90 E-value=0.012 Score=60.32 Aligned_cols=23 Identities=22% Similarity=0.410 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCChHHHHHHHhcc
Q 047171 1007 KTVALVGQSGSGKSTIIGLIERF 1029 (1224)
Q Consensus 1007 e~vaIVG~SGsGKSTL~~lL~rl 1029 (1224)
=+++++|++|+|||||++.+.+-
T Consensus 17 ~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 17 VRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHCCS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 37999999999999999999875
No 499
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=94.88 E-value=0.022 Score=58.75 Aligned_cols=52 Identities=17% Similarity=0.274 Sum_probs=34.2
Q ss_pred CCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCch-----------hhhhcCEEEEEeC
Q 047171 1134 NPMILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLS-----------TIQKADNIVVIKN 1189 (1224)
Q Consensus 1134 ~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~-----------ti~~aD~I~vl~~ 1189 (1224)
+++++++||+=- +|++-...+.+..+ .+..|++..++.+ .+..||.|.-|+.
T Consensus 76 ~~dvviIDE~Q~-~~~~~~~~l~~l~~---~~~~Vi~~Gl~~~f~~~~f~~~~~ll~~ad~v~~l~~ 138 (184)
T 2orw_A 76 DTRGVFIDEVQF-FNPSLFEVVKDLLD---RGIDVFCAGLDLTHKQNPFETTALLLSLADTVIKKKA 138 (184)
T ss_dssp TEEEEEECCGGG-SCTTHHHHHHHHHH---TTCEEEEEEESBCTTSCBCHHHHHHHHHCSEEEECCB
T ss_pred CCCEEEEECccc-CCHHHHHHHHHHHH---CCCCEEEEeeccccccCCccchHHHHHHhhheEEeee
Confidence 578999999965 66543333333332 3778888888544 3455999988753
No 500
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=94.85 E-value=0.012 Score=59.50 Aligned_cols=23 Identities=35% Similarity=0.193 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 047171 345 TIGLVGSSGSGKSTVISLLERFY 367 (1224)
Q Consensus 345 ~~~ivG~sGsGKSTl~~ll~~~~ 367 (1224)
.++|+|++||||||+.+.|...+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998654
Done!