BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047173
(557 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2NTY|A Chain A, Rop4-Gdp-Prone8
pdb|2NTY|B Chain B, Rop4-Gdp-Prone8
pdb|2WBL|A Chain A, Three-Dimensional Structure Of A Binary Rop-Prone Complex
pdb|2WBL|B Chain B, Three-Dimensional Structure Of A Binary Rop-Prone Complex
Length = 365
Score = 555 bits (1431), Expect = e-158, Method: Compositional matrix adjust.
Identities = 262/351 (74%), Positives = 312/351 (88%)
Query: 94 ERLQQDMEQMKERFAKLLLGEDMSGGGKGVSSALALSNAITNLAASVFSEQARLEPMSAE 153
ER Q DME MK+RFAKLLLGEDMSGGGKGVSSALALSNAITNLAAS+F EQ +L+PM +
Sbjct: 5 ERQQADMEMMKDRFAKLLLGEDMSGGGKGVSSALALSNAITNLAASIFGEQTKLQPMPQD 64
Query: 154 TKARWRKEIDWLLSVTDHIVEFVPSQQKSKDGTNMEIMVTRQRTDLHMNIPALRKLDAML 213
+ARW+KEIDWLLSVTDHIVEFVPSQQ SKDG EIMVTRQR DL MNIPALRKLDAML
Sbjct: 65 RQARWKKEIDWLLSVTDHIVEFVPSQQTSKDGVCTEIMVTRQRGDLLMNIPALRKLDAML 124
Query: 214 VECLENFKDQSEFYYVSKDAPDSEKGNTKRSDEKWWLPTPKVPPNGLSDMARKFLQYQKD 273
++ L+NF+ +EF+YVS+D+ + ++ R+++KWWLP KVPP GLS+ +R+ L +QKD
Sbjct: 125 IDTLDNFRGHNEFWYVSRDSEEGQQARNDRTNDKWWLPPVKVPPGGLSEPSRRMLYFQKD 184
Query: 274 CVNQVLKAAMAINAQVLSEMEIPENYIETLPKNGRASLGDAIYRSITVEYFNPDQFLSTM 333
V QV KAAMAINAQVLSEMEIPE+YI++LPKNGRASLGD+IY+SIT E+F+P+QFL+ +
Sbjct: 185 SVTQVQKAAMAINAQVLSEMEIPESYIDSLPKNGRASLGDSIYKSITEEWFDPEQFLAML 244
Query: 334 DLSSEHKILDLKNRIEASIVIWRRKMNQKDGKSAWGSAVSLEKREQFEERAETILLILKQ 393
D+S+EHK+LDLKNRIEAS+VIW+RK++ KD KS+WGSAVSLEKRE FEERAETIL++LKQ
Sbjct: 245 DMSTEHKVLDLKNRIEASVVIWKRKLHTKDTKSSWGSAVSLEKRELFEERAETILVLLKQ 304
Query: 394 WYPGIPQSSLDISKIQFNKDIGQAVLESYSRILESLAFTVLSRIEDVLYAD 444
+PG+PQSSLDISKIQFNKD+GQAVLESYSRILESLA+TV+SRIEDVLY D
Sbjct: 305 KFPGLPQSSLDISKIQFNKDVGQAVLESYSRILESLAYTVMSRIEDVLYTD 355
>pdb|2NTX|A Chain A, Prone8
pdb|2NTX|B Chain B, Prone8
Length = 365
Score = 506 bits (1303), Expect = e-143, Method: Compositional matrix adjust.
Identities = 253/351 (72%), Positives = 301/351 (85%)
Query: 94 ERLQQDMEQMKERFAKLLLGEDMSGGGKGVSSALALSNAITNLAASVFSEQARLEPMSAE 153
ER Q D E K+RFAKLLLGED SGGGKGVSSALALSNAITNLAAS+F EQ +L+P +
Sbjct: 5 ERQQADXEXXKDRFAKLLLGEDXSGGGKGVSSALALSNAITNLAASIFGEQTKLQPXPQD 64
Query: 154 TKARWRKEIDWLLSVTDHIVEFVPSQQKSKDGTNMEIMVTRQRTDLHMNIPALRKLDAML 213
+ARW+KEIDWLLSVTDHIVEFVPSQQ SKDG EI VTRQR DL NIPALRKLDA L
Sbjct: 65 RQARWKKEIDWLLSVTDHIVEFVPSQQTSKDGVCTEIXVTRQRGDLLXNIPALRKLDAXL 124
Query: 214 VECLENFKDQSEFYYVSKDAPDSEKGNTKRSDEKWWLPTPKVPPNGLSDMARKFLQYQKD 273
++ L+NF+ +EF+YVS+D+ + ++ R+++KWWLP KVPP GLS+ +R+ L +QKD
Sbjct: 125 IDTLDNFRGHNEFWYVSRDSEEGQQARNDRTNDKWWLPPVKVPPGGLSEPSRRXLYFQKD 184
Query: 274 CVNQVLKAAMAINAQVLSEMEIPENYIETLPKNGRASLGDAIYRSITVEYFNPDQFLSTM 333
V QV KAA AINAQVLSE EIPE+YI++LPKNGRASLGD+IY+SIT E+F+P+QFL+ +
Sbjct: 185 SVTQVQKAAXAINAQVLSEXEIPESYIDSLPKNGRASLGDSIYKSITEEWFDPEQFLAXL 244
Query: 334 DLSSEHKILDLKNRIEASIVIWRRKMNQKDGKSAWGSAVSLEKREQFEERAETILLILKQ 393
D S+EHK+LDLKNRIEAS+VIW+RK++ KD KS+WGSAVSLEKRE FEERAETIL++LKQ
Sbjct: 245 DXSTEHKVLDLKNRIEASVVIWKRKLHTKDTKSSWGSAVSLEKRELFEERAETILVLLKQ 304
Query: 394 WYPGIPQSSLDISKIQFNKDIGQAVLESYSRILESLAFTVLSRIEDVLYAD 444
+PG+PQSSLDISKIQFNKD+GQAVLESYSRILESLA+TV SRIEDVLY D
Sbjct: 305 KFPGLPQSSLDISKIQFNKDVGQAVLESYSRILESLAYTVXSRIEDVLYTD 355
>pdb|3CTZ|A Chain A, Structure Of Human Cytosolic X-Prolyl Aminopeptidase
Length = 623
Score = 29.3 bits (64), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
Query: 233 APDSEKGNTKRSDEKWWLPTPKVPPNGLSDMARKF-----LQYQKDCVNQVLKAAMAINA 287
AP E T DE + + + +G +D+ R Y+K+C VLK +A++A
Sbjct: 397 APVPETNRTLSLDEVYLIDSGAQYKDGTTDVTRTMHFETPTAYEKECFTYVLKGHIAVSA 456
Query: 288 QVL 290
V
Sbjct: 457 AVF 459
>pdb|4EPQ|A Chain A, Canonical Poly(Adp-Ribose) Glycohydrolase Rbpi Inhibitor
Complex From Tetrahymena Thermophila
Length = 477
Score = 28.9 bits (63), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 37/81 (45%), Gaps = 6/81 (7%)
Query: 334 DLSSEHKILDLKNRIEASIVIWRRKMNQKDGKSAWGSAVSLEKREQFEERAETILLILKQ 393
DLSS + LD +E+ + I R NQ D K AV EQ ++ +T L+Q
Sbjct: 56 DLSSGKQKLDSFQSLESILEILRDSKNQNDEKYFNLKAVF----EQLDKEEQTYF--LEQ 109
Query: 394 WYPGIPQSSLDISKIQFNKDI 414
+ P I Q L I K Q I
Sbjct: 110 FIPKICQLVLKIKKKQLKNQI 130
>pdb|4EPP|A Chain A, Canonical Poly(Adp-Ribose) Glycohydrolase From Tetrahymena
Thermophila.
pdb|4EPP|B Chain B, Canonical Poly(Adp-Ribose) Glycohydrolase From Tetrahymena
Thermophila
Length = 477
Score = 28.9 bits (63), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 37/81 (45%), Gaps = 6/81 (7%)
Query: 334 DLSSEHKILDLKNRIEASIVIWRRKMNQKDGKSAWGSAVSLEKREQFEERAETILLILKQ 393
DLSS + LD +E+ + I R NQ D K AV EQ ++ +T L+Q
Sbjct: 56 DLSSGKQKLDSFQSLESILEILRDSKNQNDEKYFNLKAVF----EQLDKEEQTYF--LEQ 109
Query: 394 WYPGIPQSSLDISKIQFNKDI 414
+ P I Q L I K Q I
Sbjct: 110 FIPKICQLVLKIKKKQLKNQI 130
>pdb|2JK9|A Chain A, The Structure Of Spla-Ryanodine Receptor Domain And Socs
Box Containing 1 In Complex With A Par-4 Peptide
Length = 212
Score = 28.9 bits (63), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 494 GWGLGSDQAENEGKKEPEEVADEPVKDDEKFTTP 527
GW LG ++ ++GK +P + ++ DE F P
Sbjct: 120 GWDLGRNRLYHDGKNQPSKTYPAFLEPDETFIVP 153
>pdb|3F2O|A Chain A, Crystal Structure Of Human SplaRYANODINE RECEPTOR DOMAIN
AND SOCS BOX Containing 1 (Spsb1) In Complex With A
20-Residue Vasa Peptide
pdb|3F2O|B Chain B, Crystal Structure Of Human SplaRYANODINE RECEPTOR DOMAIN
AND SOCS BOX Containing 1 (Spsb1) In Complex With A
20-Residue Vasa Peptide
Length = 233
Score = 28.9 bits (63), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 494 GWGLGSDQAENEGKKEPEEVADEPVKDDEKFTTP 527
GW LG ++ ++GK +P + ++ DE F P
Sbjct: 141 GWDLGRNRLYHDGKNQPSKTYPAFLEPDETFIVP 174
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.129 0.367
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,779,242
Number of Sequences: 62578
Number of extensions: 630461
Number of successful extensions: 1211
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1207
Number of HSP's gapped (non-prelim): 16
length of query: 557
length of database: 14,973,337
effective HSP length: 104
effective length of query: 453
effective length of database: 8,465,225
effective search space: 3834746925
effective search space used: 3834746925
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 54 (25.4 bits)