Query 047173
Match_columns 557
No_of_seqs 94 out of 117
Neff 2.6
Searched_HMMs 13730
Date Mon Mar 25 14:38:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047173.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/047173hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1v97a5 d.133.1.1 (A:695-1332) 26.6 15 0.0011 36.6 2.7 28 128-155 579-611 (638)
2 d1wgla_ a.5.2.4 (A:) Toll-inte 26.1 22 0.0016 26.5 3.0 35 384-418 9-43 (59)
3 d1t3qb2 d.133.1.1 (B:166-786) 25.4 19 0.0014 35.2 3.3 36 124-161 583-619 (621)
4 d1mn3a_ a.5.2.4 (A:) Vacuolar 23.6 44 0.0032 24.4 4.2 34 385-418 13-46 (54)
5 d1rkba_ c.37.1.1 (A:) Adenylat 19.1 9.1 0.00066 29.3 -0.5 39 293-331 2-40 (173)
6 d1x6va3 c.37.1.4 (A:34-228) Ad 19.0 25 0.0019 27.3 2.2 33 299-331 23-60 (195)
7 d1b6aa1 a.4.5.25 (A:375-448) M 18.4 31 0.0023 25.8 2.5 27 382-408 23-49 (74)
8 d1xgsa1 a.4.5.25 (A:195-271) M 17.1 31 0.0022 25.9 2.1 20 383-402 24-43 (77)
9 d1ffvb2 d.133.1.1 (B:147-803) 16.4 43 0.0031 32.9 3.7 38 123-161 615-652 (657)
10 d2ia7a1 d.373.1.1 (A:23-133) U 15.8 37 0.0027 26.4 2.4 37 126-162 8-56 (111)
No 1
>d1v97a5 d.133.1.1 (A:695-1332) Xanthine oxidase, C-terminal domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=26.56 E-value=15 Score=36.58 Aligned_cols=28 Identities=29% Similarity=0.324 Sum_probs=21.6
Q ss_pred HhhhhhhhhHHhhhhc----cccc-CCCCHHHH
Q 047173 128 ALSNAITNLAASVFSE----QARL-EPMSAETK 155 (557)
Q Consensus 128 AiSNAITNL~AsvFGe----lwrL-EPl~~ekK 155 (557)
||.|||-|....-|.. .+.+ =|+.|||=
T Consensus 579 AI~nAi~~A~g~~~~~~~~~~~~~~lP~TPerV 611 (638)
T d1v97a5 579 AIKDAIRAARAQHTNNNTKELFRLDSPATPEKI 611 (638)
T ss_dssp HHHHHHHHHHHHHTCCCTTCCCCCCBSCCHHHH
T ss_pred HHHHHHHHhhhhhccccccccccCCCCCCHHHH
Confidence 8999999988888873 3444 49999973
No 2
>d1wgla_ a.5.2.4 (A:) Toll-interacting protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.15 E-value=22 Score=26.46 Aligned_cols=35 Identities=14% Similarity=0.190 Sum_probs=24.1
Q ss_pred HHHHHHHHHhhCCCCCCchhhhhhhhhcchhHHHH
Q 047173 384 AETILLILKQWYPGIPQSSLDISKIQFNKDIGQAV 418 (557)
Q Consensus 384 AEtlL~~LKqRfPglpQT~LD~sKIQyNkDVG~aI 418 (557)
+|..+..||.-||++-...+..-=+..|-+|+.||
T Consensus 9 ~Ee~i~~LkeMFP~~D~~vI~~VL~a~~G~vd~ai 43 (59)
T d1wgla_ 9 SEEDLKAIQDMFPNMDQEVIRSVLEAQRGNKDAAI 43 (59)
T ss_dssp CHHHHHHHHHHCSSSCHHHHHHHHTTTTTCHHHHH
T ss_pred cHHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHH
Confidence 35568899999999987666655555555555543
No 3
>d1t3qb2 d.133.1.1 (B:166-786) Quinoline 2-oxidoreductase large subunit QorL {Pseudomonas putida [TaxId: 303]}
Probab=25.44 E-value=19 Score=35.22 Aligned_cols=36 Identities=22% Similarity=0.264 Sum_probs=24.4
Q ss_pred hhHHHhhhhhhhhHHhhhh-cccccCCCCHHHHHHhhhc
Q 047173 124 SSALALSNAITNLAASVFS-EQARLEPMSAETKARWRKE 161 (557)
Q Consensus 124 ~tALAiSNAITNL~AsvFG-elwrLEPl~~ekK~~WrrE 161 (557)
++|=||.|||.|-... +| ...+| |+.|||=-+.-+|
T Consensus 583 ~~~~AI~nAi~~A~g~-~~~r~~~l-P~tpe~v~~al~~ 619 (621)
T d1t3qb2 583 SAPAAVVAAVNDALAH-LEVVIETV-PITPERIFRSIQE 619 (621)
T ss_dssp HHHHHHHHHHHHHHGG-GTCCCCEE-SCCHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHhCC-cCCcccCC-CCCHHHHHHHHhh
Confidence 4566999999987653 33 34444 9999986555443
No 4
>d1mn3a_ a.5.2.4 (A:) Vacuolar protein sorting-associated protein vps9 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=23.63 E-value=44 Score=24.43 Aligned_cols=34 Identities=21% Similarity=0.262 Sum_probs=27.3
Q ss_pred HHHHHHHHhhCCCCCCchhhhhhhhhcchhHHHH
Q 047173 385 ETILLILKQWYPGIPQSSLDISKIQFNKDIGQAV 418 (557)
Q Consensus 385 EtlL~~LKqRfPglpQT~LD~sKIQyNkDVG~aI 418 (557)
+..+..||.-||++....+..-=...+-+|+.||
T Consensus 13 ~e~~~~Lk~MFP~~D~~VI~~VL~a~~G~vd~ai 46 (54)
T d1mn3a_ 13 KDTLNTLQNMFPDMDPSLIEDVCIAKKSRIEPCV 46 (54)
T ss_dssp HHHHHHHHHHCTTSCHHHHHHHHSCSSCSHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHH
Confidence 4478899999999988887777777777777765
No 5
>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}
Probab=19.13 E-value=9.1 Score=29.25 Aligned_cols=39 Identities=21% Similarity=0.429 Sum_probs=30.4
Q ss_pred cCchhhHHhhccccCccchhHHHHHhhcccCCChhHHhh
Q 047173 293 MEIPENYIETLPKNGRASLGDAIYRSITVEYFNPDQFLS 331 (557)
Q Consensus 293 MeIPe~y~esLPKnGrasLGD~iYr~iT~d~Fspe~lL~ 331 (557)
|-+|-..+--.|-+||++++..|-+.+.-..++.++++.
T Consensus 2 m~~~~I~i~G~pGsGKTTia~~La~~l~~~~i~~~~~~~ 40 (173)
T d1rkba_ 2 MLLPNILLTGTPGVGKTTLGKELASKSGLKYINVGDLAR 40 (173)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCcEEechHHHH
Confidence 556777778889999999999998877666666666553
No 6
>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}
Probab=18.97 E-value=25 Score=27.32 Aligned_cols=33 Identities=12% Similarity=0.259 Sum_probs=23.4
Q ss_pred HHhhccccCccchhHHHHHhhc-----ccCCChhHHhh
Q 047173 299 YIETLPKNGRASLGDAIYRSIT-----VEYFNPDQFLS 331 (557)
Q Consensus 299 y~esLPKnGrasLGD~iYr~iT-----~d~Fspe~lL~ 331 (557)
|+--+|=+||++||..|-+.+. .+.+..+++..
T Consensus 23 ~L~G~pGSGKTTiAk~La~~l~~~~~~~~~~~~d~~~~ 60 (195)
T d1x6va3 23 WLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQ 60 (195)
T ss_dssp EEESSCHHHHHHHHHHHHHHHHHTTCCEEEECHHHHTT
T ss_pred EEECCCCCCHHHHHHHHHHHHHhcCCCccchhHHhhhc
Confidence 5667899999999999988764 34444444443
No 7
>d1b6aa1 a.4.5.25 (A:375-448) Methionine aminopeptidase, insert domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=18.41 E-value=31 Score=25.81 Aligned_cols=27 Identities=7% Similarity=0.230 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHhhCCCCCCchhhhhhh
Q 047173 382 ERAETILLILKQWYPGIPQSSLDISKI 408 (557)
Q Consensus 382 eRAEtlL~~LKqRfPglpQT~LD~sKI 408 (557)
..|+.+|..|+.+|+.||.+-=-..++
T Consensus 23 ~~ar~lL~~I~~~f~tLPFs~R~L~~~ 49 (74)
T d1b6aa1 23 PRTKHLLNVINENFGTLAFCRRWLDRL 49 (74)
T ss_dssp HHHHHHHHHHHHHTTTSCEEHHHHHHT
T ss_pred HHHHHHHHHHHHHCCCCCccHHHHhhc
Confidence 357789999999999999986555443
No 8
>d1xgsa1 a.4.5.25 (A:195-271) Methionine aminopeptidase, insert domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=17.05 E-value=31 Score=25.93 Aligned_cols=20 Identities=25% Similarity=0.350 Sum_probs=18.1
Q ss_pred HHHHHHHHHHhhCCCCCCch
Q 047173 383 RAETILLILKQWYPGIPQSS 402 (557)
Q Consensus 383 RAEtlL~~LKqRfPglpQT~ 402 (557)
.|..+|..++++|+.||.+.
T Consensus 24 ~ar~ll~~I~~~f~tLPFs~ 43 (77)
T d1xgsa1 24 QARFLLAKIKREYGTLPFAY 43 (77)
T ss_dssp HHHHHHHHHHHHTTTSCEES
T ss_pred HHHHHHHHHHHHCCCcceeH
Confidence 57889999999999999984
No 9
>d1ffvb2 d.133.1.1 (B:147-803) Carbon monoxide (CO) dehydrogenase molybdoprotein {Hydrogenophaga pseudoflava [TaxId: 47421]}
Probab=16.42 E-value=43 Score=32.95 Aligned_cols=38 Identities=18% Similarity=0.067 Sum_probs=26.2
Q ss_pred chhHHHhhhhhhhhHHhhhhcccccCCCCHHHHHHhhhc
Q 047173 123 VSSALALSNAITNLAASVFSEQARLEPMSAETKARWRKE 161 (557)
Q Consensus 123 V~tALAiSNAITNL~AsvFGelwrLEPl~~ekK~~WrrE 161 (557)
+++|=||.|||-|-... .|--.+==||.|||=-..-+|
T Consensus 615 ~~~~~Ai~nAI~~A~~~-tG~r~~~lP~Tpe~v~~al~~ 652 (657)
T d1ffvb2 615 VGSIPTFTAAVVDAFAH-VGVTHLDMPHTSYRVWKSLKE 652 (657)
T ss_dssp HHHHHHHHHHHHHHHGG-GTCCCCCSCCCHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHh-hCCccCCCCCCHHHHHHHHHh
Confidence 34677899999987432 465444459999986665554
No 10
>d2ia7a1 d.373.1.1 (A:23-133) Uncharacterized protein GSU0986 {Geobacter sulfurreducens [TaxId: 35554]}
Probab=15.82 E-value=37 Score=26.36 Aligned_cols=37 Identities=11% Similarity=0.094 Sum_probs=32.6
Q ss_pred HHHhhhhhhhhHHhhhhc----------cccc--CCCCHHHHHHhhhcc
Q 047173 126 ALALSNAITNLAASVFSE----------QARL--EPMSAETKARWRKEI 162 (557)
Q Consensus 126 ALAiSNAITNL~AsvFGe----------lwrL--EPl~~ekK~~WrrEm 162 (557)
.=+|-++|-||--|-+|| +|.| ||+.+..+...++++
T Consensus 8 ee~I~q~i~nll~T~~GEr~~~p~fG~~l~~llFe~~~~~~~~~i~~~I 56 (111)
T d2ia7a1 8 EEDIAESIRIILGTARGERVMRPDFGCGIHDRVFSVINTTTLGLIENEV 56 (111)
T ss_dssp HHHHHHHHHHHHTCCTTSSTTCTTCSCGGGGCCCSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCccccCCccccEechhhhhhcchhHHHHHHHHH
Confidence 446889999999999998 8888 999999999999888
Done!