Query 047174
Match_columns 80
No_of_seqs 30 out of 32
Neff 2.8
Searched_HMMs 46136
Date Fri Mar 29 08:27:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047174.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047174hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF13405 EF-hand_6: EF-hand do 96.8 0.0011 2.4E-08 34.7 2.2 18 59-76 2-19 (31)
2 PF00036 EF-hand_1: EF hand; 96.7 0.0013 2.8E-08 35.3 2.1 18 59-76 2-19 (29)
3 PF13202 EF-hand_5: EF hand; P 96.2 0.0044 9.6E-08 32.1 2.1 18 59-76 1-18 (25)
4 PF13499 EF-hand_7: EF-hand do 95.1 0.021 4.5E-07 32.8 2.3 19 58-76 1-19 (66)
5 cd05026 S-100Z S-100Z: S-100Z 94.1 0.049 1.1E-06 34.7 2.4 25 52-76 5-31 (93)
6 smart00054 EFh EF-hand, calciu 94.0 0.062 1.3E-06 24.4 2.1 18 59-76 2-19 (29)
7 smart00027 EH Eps15 homology d 93.0 0.1 2.2E-06 32.7 2.6 25 53-77 6-30 (96)
8 cd05022 S-100A13 S-100A13: S-1 92.6 0.12 2.6E-06 33.5 2.6 24 53-76 4-28 (89)
9 cd05027 S-100B S-100B: S-100B 92.1 0.15 3.3E-06 32.5 2.5 23 54-76 5-29 (88)
10 cd05025 S-100A1 S-100A1: S-100 92.0 0.15 3.4E-06 31.7 2.4 25 52-76 4-30 (92)
11 cd05031 S-100A10_like S-100A10 91.7 0.17 3.8E-06 31.6 2.4 26 51-76 2-29 (94)
12 KOG0027 Calmodulin and related 91.6 0.21 4.6E-06 33.4 2.9 24 53-76 4-27 (151)
13 cd00213 S-100 S-100: S-100 dom 91.2 0.21 4.5E-06 30.5 2.3 25 52-76 3-29 (88)
14 PF13499 EF-hand_7: EF-hand do 90.7 0.39 8.5E-06 27.4 3.1 22 55-76 38-59 (66)
15 PTZ00183 centrin; Provisional 90.1 0.33 7.1E-06 31.0 2.6 24 53-76 13-36 (158)
16 PF13833 EF-hand_8: EF-hand do 89.9 0.25 5.3E-06 27.6 1.7 23 54-76 22-44 (54)
17 PTZ00184 calmodulin; Provision 89.5 0.5 1.1E-05 29.5 3.1 39 37-75 64-102 (149)
18 KOG0037 Ca2+-binding protein, 89.1 0.16 3.5E-06 39.1 0.7 26 54-79 121-146 (221)
19 cd05029 S-100A6 S-100A6: S-100 88.2 0.47 1E-05 30.3 2.4 25 52-76 5-31 (88)
20 PTZ00184 calmodulin; Provision 87.5 0.61 1.3E-05 29.1 2.6 24 53-76 7-30 (149)
21 cd00051 EFh EF-hand, calcium b 87.2 0.51 1.1E-05 24.4 1.7 17 59-75 2-18 (63)
22 KOG0027 Calmodulin and related 87.1 0.26 5.5E-06 33.0 0.7 42 37-78 61-106 (151)
23 cd00052 EH Eps15 homology doma 85.2 0.57 1.2E-05 26.2 1.4 21 56-76 32-52 (67)
24 KOG0041 Predicted Ca2+-binding 84.5 0.65 1.4E-05 36.4 1.9 63 16-78 52-120 (244)
25 PTZ00183 centrin; Provisional 83.8 0.76 1.7E-05 29.3 1.7 20 57-76 90-109 (158)
26 cd05022 S-100A13 S-100A13: S-1 82.6 1.9 4.1E-05 27.9 3.2 51 25-76 10-66 (89)
27 KOG0044 Ca2+ sensor (EF-Hand s 82.2 1.2 2.5E-05 33.1 2.3 38 37-75 44-82 (193)
28 KOG4403 Cell surface glycoprot 82.1 0.98 2.1E-05 38.8 2.1 31 47-77 54-88 (575)
29 cd05025 S-100A1 S-100A1: S-100 81.3 1.5 3.2E-05 27.2 2.2 21 56-76 51-71 (92)
30 cd05026 S-100Z S-100Z: S-100Z 80.9 1.5 3.2E-05 27.8 2.2 58 19-76 3-72 (93)
31 cd05023 S-100A11 S-100A11: S-1 79.3 2.2 4.7E-05 27.3 2.6 26 50-75 2-29 (89)
32 COG5126 FRQ1 Ca2+-binding prot 75.8 2.8 6E-05 30.5 2.6 30 46-75 8-38 (160)
33 cd05031 S-100A10_like S-100A10 74.4 3 6.6E-05 26.0 2.2 53 24-76 9-70 (94)
34 cd05030 calgranulins Calgranul 73.7 3 6.6E-05 26.1 2.1 21 56-76 50-70 (88)
35 cd00252 SPARC_EC SPARC_EC; ext 73.0 3.2 6.8E-05 28.2 2.2 22 54-75 45-66 (116)
36 cd05029 S-100A6 S-100A6: S-100 71.0 4 8.7E-05 25.9 2.2 56 19-76 3-70 (88)
37 smart00027 EH Eps15 homology d 70.6 10 0.00022 23.6 4.0 21 56-76 43-63 (96)
38 cd05023 S-100A11 S-100A11: S-1 66.5 5.3 0.00011 25.5 2.1 20 57-76 52-71 (89)
39 COG3382 Solo B3/4 domain (OB-f 60.5 6.2 0.00013 30.5 1.8 21 26-46 84-104 (229)
40 KOG0044 Ca2+ sensor (EF-Hand s 60.1 4.3 9.2E-05 30.1 0.9 18 58-75 101-118 (193)
41 COG5126 FRQ1 Ca2+-binding prot 53.5 6.5 0.00014 28.6 0.9 25 53-77 88-112 (160)
42 PRK12309 transaldolase/EF-hand 52.0 14 0.00031 29.8 2.7 16 59-74 359-374 (391)
43 PF04367 DUF502: Protein of un 51.2 14 0.00031 24.2 2.2 37 37-73 22-58 (108)
44 PF14788 EF-hand_10: EF hand; 50.5 18 0.00038 22.2 2.3 24 52-75 16-39 (51)
45 KOG1707 Predicted Ras related/ 48.1 10 0.00022 33.3 1.4 39 37-76 285-334 (625)
46 TIGR03296 M6dom_TIGR03296 M6 f 48.0 8.4 0.00018 29.1 0.8 15 62-76 91-105 (286)
47 PLN02964 phosphatidylserine de 47.4 14 0.00031 32.0 2.1 39 37-76 196-234 (644)
48 PRK12309 transaldolase/EF-hand 45.8 20 0.00043 29.1 2.6 50 23-75 299-352 (391)
49 KOG0036 Predicted mitochondria 43.2 21 0.00046 30.4 2.5 28 50-77 7-34 (463)
50 KOG0034 Ca2+/calmodulin-depend 43.0 18 0.00039 26.5 1.8 23 54-76 143-166 (187)
51 PF09631 Sen15: Sen15 protein; 42.1 17 0.00037 23.6 1.4 13 55-67 54-66 (101)
52 cd05024 S-100A10 S-100A10: A s 37.8 30 0.00066 23.0 2.1 19 57-75 48-66 (91)
53 PF10384 Scm3: Centromere prot 36.9 38 0.00082 21.0 2.3 20 60-79 19-39 (58)
54 PLN02964 phosphatidylserine de 35.4 35 0.00075 29.7 2.6 21 54-74 140-160 (644)
55 KOG0028 Ca2+-binding protein ( 35.4 39 0.00085 25.5 2.6 38 37-75 86-124 (172)
56 PF10234 Cluap1: Clusterin-ass 35.0 31 0.00068 27.0 2.1 44 15-66 193-241 (267)
57 PF09422 WTX: WTX protein; In 34.5 12 0.00026 31.8 -0.2 22 37-69 247-268 (471)
58 PF07994 NAD_binding_5: Myo-in 34.2 19 0.00041 28.1 0.9 42 24-67 247-288 (295)
59 KOG0030 Myosin essential light 33.1 40 0.00086 25.0 2.3 24 53-76 7-30 (152)
60 KOG0028 Ca2+-binding protein ( 32.9 28 0.00061 26.2 1.5 27 51-77 27-53 (172)
61 PF01023 S_100: S-100/ICaBP ty 30.3 69 0.0015 18.4 2.6 13 54-66 3-15 (44)
62 cd06399 PB1_P40 The PB1 domain 29.5 34 0.00073 23.6 1.3 21 47-67 25-45 (92)
63 PF10923 DUF2791: P-loop Domai 29.2 88 0.0019 25.8 3.9 46 25-70 302-356 (416)
64 smart00386 HAT HAT (Half-A-TPR 29.1 50 0.0011 15.3 1.6 11 56-66 3-13 (33)
65 PF13767 DUF4168: Domain of un 28.2 27 0.00059 21.6 0.7 38 8-48 30-67 (78)
66 PF13174 TPR_6: Tetratricopept 28.1 22 0.00048 17.0 0.2 15 37-51 18-32 (33)
67 PF08987 DUF1892: Protein of u 28.1 40 0.00087 24.0 1.6 36 41-78 38-87 (115)
68 PF02184 HAT: HAT (Half-A-TPR) 27.6 50 0.0011 18.6 1.6 11 56-66 3-13 (32)
69 PF03520 KCNQ_channel: KCNQ vo 27.4 21 0.00044 27.5 0.0 28 46-76 79-112 (202)
70 PF10591 SPARC_Ca_bdg: Secrete 27.2 33 0.00071 22.9 1.0 20 57-76 54-73 (113)
71 PF05465 Halo_GVPC: Halobacter 25.3 42 0.00091 18.5 1.0 18 51-68 10-27 (32)
72 PF08338 DUF1731: Domain of un 24.9 37 0.00081 19.8 0.8 15 45-59 33-47 (48)
73 KOG0031 Myosin regulatory ligh 24.5 59 0.0013 24.6 2.0 20 57-76 101-120 (171)
74 PF09912 DUF2141: Uncharacteri 24.0 31 0.00067 22.9 0.4 11 66-76 61-71 (112)
75 PF11043 DUF2856: Protein of u 23.8 55 0.0012 22.6 1.6 48 16-63 37-91 (97)
76 PF14424 Toxin-deaminase: The 22.7 1.2E+02 0.0026 21.1 3.1 47 19-70 74-122 (133)
77 PF15386 Tantalus: Drosophila 22.7 32 0.00068 21.8 0.2 22 57-78 36-57 (61)
78 PF08706 D5_N: D5 N terminal l 21.6 71 0.0015 20.1 1.7 27 51-77 74-111 (150)
79 cd01612 APG12_C Ubiquitin-like 21.2 74 0.0016 20.6 1.7 58 11-75 17-77 (87)
80 KOG0061 Transporter, ABC super 20.9 1.1E+02 0.0023 25.9 3.0 29 8-38 194-222 (613)
81 PF08181 DegQ: DegQ (SacQ) fam 20.8 81 0.0017 19.3 1.7 16 53-68 24-39 (46)
82 PF02171 Piwi: Piwi domain; I 20.4 2.5E+02 0.0055 20.4 4.5 59 20-79 127-194 (302)
No 1
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=96.81 E-value=0.0011 Score=34.71 Aligned_cols=18 Identities=11% Similarity=0.067 Sum_probs=15.5
Q ss_pred HHHHHHhhcCCCCCceee
Q 047174 59 CKAIFEKFGGLQNPLGVV 76 (80)
Q Consensus 59 ~R~vFeqfDeDsnGti~~ 76 (80)
++.+|++||.|.||.|+.
T Consensus 2 l~~~F~~~D~d~dG~I~~ 19 (31)
T PF13405_consen 2 LREAFKMFDKDGDGFIDF 19 (31)
T ss_dssp HHHHHHHH-TTSSSEEEH
T ss_pred HHHHHHHHCCCCCCcCcH
Confidence 688999999999999975
No 2
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=96.74 E-value=0.0013 Score=35.26 Aligned_cols=18 Identities=17% Similarity=0.034 Sum_probs=16.5
Q ss_pred HHHHHHhhcCCCCCceee
Q 047174 59 CKAIFEKFGGLQNPLGVV 76 (80)
Q Consensus 59 ~R~vFeqfDeDsnGti~~ 76 (80)
++.+|+.||.|.||.|+.
T Consensus 2 ~~~~F~~~D~d~dG~I~~ 19 (29)
T PF00036_consen 2 LKEAFREFDKDGDGKIDF 19 (29)
T ss_dssp HHHHHHHHSTTSSSEEEH
T ss_pred HHHHHHHHCCCCCCcCCH
Confidence 788999999999999974
No 3
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=96.20 E-value=0.0044 Score=32.07 Aligned_cols=18 Identities=17% Similarity=0.093 Sum_probs=16.0
Q ss_pred HHHHHHhhcCCCCCceee
Q 047174 59 CKAIFEKFGGLQNPLGVV 76 (80)
Q Consensus 59 ~R~vFeqfDeDsnGti~~ 76 (80)
++..|+++|.|.+|+|+.
T Consensus 1 l~~~F~~~D~d~DG~is~ 18 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISF 18 (25)
T ss_dssp HHHHHHHHTTTSSSEEEH
T ss_pred CHHHHHHHcCCCCCcCCH
Confidence 578999999999999974
No 4
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=95.08 E-value=0.021 Score=32.77 Aligned_cols=19 Identities=21% Similarity=0.125 Sum_probs=14.1
Q ss_pred HHHHHHHhhcCCCCCceee
Q 047174 58 NCKAIFEKFGGLQNPLGVV 76 (80)
Q Consensus 58 ~~R~vFeqfDeDsnGti~~ 76 (80)
+++.+|+.||.|.||.|+.
T Consensus 1 ~l~~~F~~~D~d~~G~i~~ 19 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISK 19 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEH
T ss_pred CHHHHHHHHcCCccCCCCH
Confidence 4677888888888887763
No 5
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=94.05 E-value=0.049 Score=34.68 Aligned_cols=25 Identities=8% Similarity=0.141 Sum_probs=20.3
Q ss_pred chHhHHHHHHHHHhhc-CCCCC-ceee
Q 047174 52 IDDSLRNCKAIFEKFG-GLQNP-LGVV 76 (80)
Q Consensus 52 ide~lr~~R~vFeqfD-eDsnG-ti~~ 76 (80)
.-.++..++.+|.+|| .|+|| +|..
T Consensus 5 le~a~~~~~~~F~~~dd~dgdg~~Is~ 31 (93)
T cd05026 5 LEGAMDTLIRIFHNYSGKEGDRYKLSK 31 (93)
T ss_pred HHHHHHHHHHHHHHHHccCCCCCEECH
Confidence 3457888999999999 89998 6864
No 6
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=93.96 E-value=0.062 Score=24.36 Aligned_cols=18 Identities=17% Similarity=-0.027 Sum_probs=15.8
Q ss_pred HHHHHHhhcCCCCCceee
Q 047174 59 CKAIFEKFGGLQNPLGVV 76 (80)
Q Consensus 59 ~R~vFeqfDeDsnGti~~ 76 (80)
++.+|+.||.|.+|.|..
T Consensus 2 ~~~~f~~~d~~~~g~i~~ 19 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDF 19 (29)
T ss_pred HHHHHHHHCCCCCCcEeH
Confidence 678999999999998864
No 7
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=93.02 E-value=0.1 Score=32.71 Aligned_cols=25 Identities=12% Similarity=0.072 Sum_probs=21.0
Q ss_pred hHhHHHHHHHHHhhcCCCCCceeee
Q 047174 53 DDSLRNCKAIFEKFGGLQNPLGVVI 77 (80)
Q Consensus 53 de~lr~~R~vFeqfDeDsnGti~~~ 77 (80)
.+-+..++.+|+.||.|.+|.|+.-
T Consensus 6 ~~~~~~l~~~F~~~D~d~~G~Is~~ 30 (96)
T smart00027 6 PEDKAKYEQIFRSLDKNQDGTVTGA 30 (96)
T ss_pred HHHHHHHHHHHHHhCCCCCCeEeHH
Confidence 3567889999999999999998753
No 8
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=92.62 E-value=0.12 Score=33.46 Aligned_cols=24 Identities=8% Similarity=-0.039 Sum_probs=20.4
Q ss_pred hHhHHHHHHHHHhhcC-CCCCceee
Q 047174 53 DDSLRNCKAIFEKFGG-LQNPLGVV 76 (80)
Q Consensus 53 de~lr~~R~vFeqfDe-DsnGti~~ 76 (80)
-.++..++.+|..||. |.+|+|..
T Consensus 4 E~ai~~l~~~F~~fd~~~~~g~i~~ 28 (89)
T cd05022 4 EKAIETLVSNFHKASVKGGKESLTA 28 (89)
T ss_pred HHHHHHHHHHHHHHhCCCCCCeECH
Confidence 4678899999999999 99998864
No 9
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=92.08 E-value=0.15 Score=32.55 Aligned_cols=23 Identities=4% Similarity=0.040 Sum_probs=19.5
Q ss_pred HhHHHHHHHHHhhc-CCCCC-ceee
Q 047174 54 DSLRNCKAIFEKFG-GLQNP-LGVV 76 (80)
Q Consensus 54 e~lr~~R~vFeqfD-eDsnG-ti~~ 76 (80)
.++-.++.+|..|| .|+|| .|+.
T Consensus 5 ~~~~~l~~aF~~fD~~dgdG~~I~~ 29 (88)
T cd05027 5 KAMVALIDVFHQYSGREGDKHKLKK 29 (88)
T ss_pred HHHHHHHHHHHHhcccCCCcCEECH
Confidence 56788999999998 89999 5864
No 10
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=91.95 E-value=0.15 Score=31.66 Aligned_cols=25 Identities=4% Similarity=0.060 Sum_probs=20.5
Q ss_pred chHhHHHHHHHHHhhc-CCCCC-ceee
Q 047174 52 IDDSLRNCKAIFEKFG-GLQNP-LGVV 76 (80)
Q Consensus 52 ide~lr~~R~vFeqfD-eDsnG-ti~~ 76 (80)
+..+...++.+|+.|| .|.+| .|+.
T Consensus 4 ~e~~~~~l~~~F~~fDd~dg~G~~Is~ 30 (92)
T cd05025 4 LETAMETLINVFHAHSGKEGDKYKLSK 30 (92)
T ss_pred HHHHHHHHHHHHHHHhcccCCCCeECH
Confidence 3467788999999997 99999 5864
No 11
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=91.66 E-value=0.17 Score=31.63 Aligned_cols=26 Identities=8% Similarity=0.199 Sum_probs=21.4
Q ss_pred cchHhHHHHHHHHHhhcC-CC-CCceee
Q 047174 51 KIDDSLRNCKAIFEKFGG-LQ-NPLGVV 76 (80)
Q Consensus 51 kide~lr~~R~vFeqfDe-Ds-nGti~~ 76 (80)
.+-.++..++.+|..||. |. +|.|+.
T Consensus 2 ~~~~~~~~l~~~F~~~D~~dg~dG~Is~ 29 (94)
T cd05031 2 ELEHAMESLILTFHRYAGKDGDKNTLSR 29 (94)
T ss_pred hHHHHHHHHHHHHHHHhccCCCCCeECH
Confidence 345678899999999997 97 699875
No 12
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=91.60 E-value=0.21 Score=33.44 Aligned_cols=24 Identities=17% Similarity=0.169 Sum_probs=20.3
Q ss_pred hHhHHHHHHHHHhhcCCCCCceee
Q 047174 53 DDSLRNCKAIFEKFGGLQNPLGVV 76 (80)
Q Consensus 53 de~lr~~R~vFeqfDeDsnGti~~ 76 (80)
.+....++.+|+.||+|.+|.|..
T Consensus 4 ~~~~~el~~~F~~fD~d~~G~i~~ 27 (151)
T KOG0027|consen 4 EEQILELKEAFQLFDKDGDGKISV 27 (151)
T ss_pred HHHHHHHHHHHHHHCCCCCCcccH
Confidence 456788999999999999999853
No 13
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=91.17 E-value=0.21 Score=30.46 Aligned_cols=25 Identities=12% Similarity=0.286 Sum_probs=21.6
Q ss_pred chHhHHHHHHHHHhhcC--CCCCceee
Q 047174 52 IDDSLRNCKAIFEKFGG--LQNPLGVV 76 (80)
Q Consensus 52 ide~lr~~R~vFeqfDe--DsnGti~~ 76 (80)
..+.++.++.+|..||. |.+|.|+.
T Consensus 3 ~~~~~~~l~~~F~~~D~~~~~~G~Is~ 29 (88)
T cd00213 3 LEKAIETIIDVFHKYSGKEGDKDTLSK 29 (88)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCcCcH
Confidence 35778899999999999 89999864
No 14
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=90.73 E-value=0.39 Score=27.39 Aligned_cols=22 Identities=18% Similarity=0.036 Sum_probs=18.1
Q ss_pred hHHHHHHHHHhhcCCCCCceee
Q 047174 55 SLRNCKAIFEKFGGLQNPLGVV 76 (80)
Q Consensus 55 ~lr~~R~vFeqfDeDsnGti~~ 76 (80)
.-..+..+|+.+|.|.||.|..
T Consensus 38 ~~~~~~~~~~~~D~d~dG~i~~ 59 (66)
T PF13499_consen 38 SDEMIDQIFREFDTDGDGRISF 59 (66)
T ss_dssp HHHHHHHHHHHHTTTSSSSEEH
T ss_pred HHHHHHHHHHHhCCCCcCCCcH
Confidence 3346788899999999999863
No 15
>PTZ00183 centrin; Provisional
Probab=90.10 E-value=0.33 Score=30.97 Aligned_cols=24 Identities=13% Similarity=0.104 Sum_probs=20.1
Q ss_pred hHhHHHHHHHHHhhcCCCCCceee
Q 047174 53 DDSLRNCKAIFEKFGGLQNPLGVV 76 (80)
Q Consensus 53 de~lr~~R~vFeqfDeDsnGti~~ 76 (80)
.+..+.+..+|.+||.|.||.|+.
T Consensus 13 ~~~~~~~~~~F~~~D~~~~G~i~~ 36 (158)
T PTZ00183 13 EDQKKEIREAFDLFDTDGSGTIDP 36 (158)
T ss_pred HHHHHHHHHHHHHhCCCCCCcccH
Confidence 356678999999999999999875
No 16
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=89.87 E-value=0.25 Score=27.58 Aligned_cols=23 Identities=13% Similarity=0.063 Sum_probs=19.9
Q ss_pred HhHHHHHHHHHhhcCCCCCceee
Q 047174 54 DSLRNCKAIFEKFGGLQNPLGVV 76 (80)
Q Consensus 54 e~lr~~R~vFeqfDeDsnGti~~ 76 (80)
-+-..++.+|..||.|.||.|+.
T Consensus 22 ~s~~e~~~l~~~~D~~~~G~I~~ 44 (54)
T PF13833_consen 22 LSEEEVDRLFREFDTDGDGYISF 44 (54)
T ss_dssp SCHHHHHHHHHHHTTSSSSSEEH
T ss_pred CCHHHHHHHHHhcccCCCCCCCH
Confidence 55567999999999999999974
No 17
>PTZ00184 calmodulin; Provisional
Probab=89.46 E-value=0.5 Score=29.53 Aligned_cols=39 Identities=21% Similarity=0.170 Sum_probs=24.9
Q ss_pred CcccchhhhhhcCccchHhHHHHHHHHHhhcCCCCCcee
Q 047174 37 TALKSFNSIILKFPKIDDSLRNCKAIFEKFGGLQNPLGV 75 (80)
Q Consensus 37 ~s~KSfnSIiMkFPkide~lr~~R~vFeqfDeDsnGti~ 75 (80)
-++..|=..+-.+.........++.+|+.||.|.+|.|+
T Consensus 64 i~~~ef~~~l~~~~~~~~~~~~~~~~F~~~D~~~~g~i~ 102 (149)
T PTZ00184 64 IDFPEFLTLMARKMKDTDSEEEIKEAFKVFDRDGNGFIS 102 (149)
T ss_pred CcHHHHHHHHHHhccCCcHHHHHHHHHHhhCCCCCCeEe
Confidence 444555444433333333446788999999999999876
No 18
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=89.12 E-value=0.16 Score=39.12 Aligned_cols=26 Identities=8% Similarity=0.103 Sum_probs=21.8
Q ss_pred HhHHHHHHHHHhhcCCCCCceeeeee
Q 047174 54 DSLRNCKAIFEKFGGLQNPLGVVIAL 79 (80)
Q Consensus 54 e~lr~~R~vFeqfDeDsnGti~~~~~ 79 (80)
..+.+-|.||++||.|..|+|+.--|
T Consensus 121 ~~i~~Wr~vF~~~D~D~SG~I~~sEL 146 (221)
T KOG0037|consen 121 KYINQWRNVFRTYDRDRSGTIDSSEL 146 (221)
T ss_pred HHHHHHHHHHHhcccCCCCcccHHHH
Confidence 46778899999999999999986433
No 19
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=88.19 E-value=0.47 Score=30.25 Aligned_cols=25 Identities=24% Similarity=0.294 Sum_probs=20.7
Q ss_pred chHhHHHHHHHHHhhcC-CC-CCceee
Q 047174 52 IDDSLRNCKAIFEKFGG-LQ-NPLGVV 76 (80)
Q Consensus 52 ide~lr~~R~vFeqfDe-Ds-nGti~~ 76 (80)
..+++..+=++|.|||. |+ +|+|..
T Consensus 5 ~e~~~~~~i~~F~~y~~~~~~~g~Is~ 31 (88)
T cd05029 5 LDQAIGLLVAIFHKYSGREGDKNTLSK 31 (88)
T ss_pred HHHHHHHHHHHHHHHHccCCCCCEECH
Confidence 45788899999999998 77 788864
No 20
>PTZ00184 calmodulin; Provisional
Probab=87.55 E-value=0.61 Score=29.10 Aligned_cols=24 Identities=13% Similarity=0.158 Sum_probs=19.0
Q ss_pred hHhHHHHHHHHHhhcCCCCCceee
Q 047174 53 DDSLRNCKAIFEKFGGLQNPLGVV 76 (80)
Q Consensus 53 de~lr~~R~vFeqfDeDsnGti~~ 76 (80)
.+..+.++..|..+|.|.+|+|+.
T Consensus 7 ~~~~~~~~~~F~~~D~~~~G~i~~ 30 (149)
T PTZ00184 7 EEQIAEFKEAFSLFDKDGDGTITT 30 (149)
T ss_pred HHHHHHHHHHHHHHcCCCCCcCCH
Confidence 356678888899999988888764
No 21
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=87.19 E-value=0.51 Score=24.41 Aligned_cols=17 Identities=12% Similarity=0.012 Sum_probs=11.0
Q ss_pred HHHHHHhhcCCCCCcee
Q 047174 59 CKAIFEKFGGLQNPLGV 75 (80)
Q Consensus 59 ~R~vFeqfDeDsnGti~ 75 (80)
++.+|..||.|.+|.|+
T Consensus 2 ~~~~f~~~d~~~~g~l~ 18 (63)
T cd00051 2 LREAFRLFDKDGDGTIS 18 (63)
T ss_pred HHHHHHHhCCCCCCcCc
Confidence 45667777777666654
No 22
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=87.14 E-value=0.26 Score=33.03 Aligned_cols=42 Identities=14% Similarity=0.133 Sum_probs=29.3
Q ss_pred CcccchhhhhhcCccchH----hHHHHHHHHHhhcCCCCCceeeee
Q 047174 37 TALKSFNSIILKFPKIDD----SLRNCKAIFEKFGGLQNPLGVVIA 78 (80)
Q Consensus 37 ~s~KSfnSIiMkFPkide----~lr~~R~vFeqfDeDsnGti~~~~ 78 (80)
-++..|=++..+...... +-+.++.+|.-||.|.||.|..-.
T Consensus 61 I~~~eF~~l~~~~~~~~~~~~~~~~el~eaF~~fD~d~~G~Is~~e 106 (151)
T KOG0027|consen 61 IDFEEFLDLMEKLGEEKTDEEASSEELKEAFRVFDKDGDGFISASE 106 (151)
T ss_pred EcHHHHHHHHHhhhcccccccccHHHHHHHHHHHccCCCCcCcHHH
Confidence 445555555555554444 455999999999999999997543
No 23
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=85.16 E-value=0.57 Score=26.19 Aligned_cols=21 Identities=5% Similarity=-0.232 Sum_probs=17.6
Q ss_pred HHHHHHHHHhhcCCCCCceee
Q 047174 56 LRNCKAIFEKFGGLQNPLGVV 76 (80)
Q Consensus 56 lr~~R~vFeqfDeDsnGti~~ 76 (80)
=..++.+|+.+|.|.+|.|+.
T Consensus 32 ~~~~~~i~~~~d~~~~g~i~~ 52 (67)
T cd00052 32 RSVLAQIWDLADTDKDGKLDK 52 (67)
T ss_pred HHHHHHHHHHhcCCCCCcCCH
Confidence 456899999999999998863
No 24
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=84.49 E-value=0.65 Score=36.43 Aligned_cols=63 Identities=8% Similarity=0.275 Sum_probs=39.7
Q ss_pred CchhHHHHHHHHHHHHHhhc--CCc---ccchhhhhhcCccchH-hHHHHHHHHHhhcCCCCCceeeee
Q 047174 16 MPETKLEAKMVEAMQRRAAE--GTA---LKSFNSIILKFPKIDD-SLRNCKAIFEKFGGLQNPLGVVIA 78 (80)
Q Consensus 16 ~~e~kLe~KmvEam~~Ra~~--g~s---~KSfnSIiMkFPkide-~lr~~R~vFeqfDeDsnGti~~~~ 78 (80)
+.+++|+..++--.-.-.+. |.. --+++++--.||-|.. -.+..-.+|.|||+|-+|-||+--
T Consensus 52 s~~~el~~~l~rr~~ines~~~~~~~r~s~kv~n~yteF~eFsrkqIk~~~~~Fk~yDe~rDgfIdl~E 120 (244)
T KOG0041|consen 52 SADQELSANLIRRDDINESQGAGVPSRDSLKVFNVYTEFSEFSRKQIKDAESMFKQYDEDRDGFIDLME 120 (244)
T ss_pred chHHHHHHHHHHHHHHhhccccCCcccccccccchhhhhhHHHHHHHHHHHHHHHHhcccccccccHHH
Confidence 55667777665431111112 211 1456667778887743 356667899999999999999753
No 25
>PTZ00183 centrin; Provisional
Probab=83.79 E-value=0.76 Score=29.27 Aligned_cols=20 Identities=10% Similarity=0.003 Sum_probs=15.1
Q ss_pred HHHHHHHHhhcCCCCCceee
Q 047174 57 RNCKAIFEKFGGLQNPLGVV 76 (80)
Q Consensus 57 r~~R~vFeqfDeDsnGti~~ 76 (80)
..++.+|+.||.|.+|.|+.
T Consensus 90 ~~l~~~F~~~D~~~~G~i~~ 109 (158)
T PTZ00183 90 EEILKAFRLFDDDKTGKISL 109 (158)
T ss_pred HHHHHHHHHhCCCCCCcCcH
Confidence 56778888888888887753
No 26
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=82.57 E-value=1.9 Score=27.86 Aligned_cols=51 Identities=12% Similarity=0.283 Sum_probs=35.6
Q ss_pred HHHHHHHHhh-cC---Ccccchhhhhhc-Cccc-hHhHHHHHHHHHhhcCCCCCceee
Q 047174 25 MVEAMQRRAA-EG---TALKSFNSIILK-FPKI-DDSLRNCKAIFEKFGGLQNPLGVV 76 (80)
Q Consensus 25 mvEam~~Ra~-~g---~s~KSfnSIiMk-FPki-de~lr~~R~vFeqfDeDsnGti~~ 76 (80)
++++.+.-.. .| -+...+=.++.. +|.+ .+. ..|+.+|++.|.|++|.|+.
T Consensus 10 l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~-~~v~~mi~~~D~d~DG~I~F 66 (89)
T cd05022 10 LVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDV-EGLEEKMKNLDVNQDSKLSF 66 (89)
T ss_pred HHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCH-HHHHHHHHHhCCCCCCCCcH
Confidence 4555565555 34 345556667777 8754 222 67999999999999999974
No 27
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=82.19 E-value=1.2 Score=33.08 Aligned_cols=38 Identities=21% Similarity=0.295 Sum_probs=28.5
Q ss_pred Ccccchhhhh-hcCccchHhHHHHHHHHHhhcCCCCCcee
Q 047174 37 TALKSFNSII-LKFPKIDDSLRNCKAIFEKFGGLQNPLGV 75 (80)
Q Consensus 37 ~s~KSfnSIi-MkFPkide~lr~~R~vFeqfDeDsnGti~ 75 (80)
-+...|=.|. .-|| .-.+=.-+.-||+-||.|.||+|+
T Consensus 44 ~~~~~F~~i~~~~fp-~gd~~~y~~~vF~~fD~~~dg~i~ 82 (193)
T KOG0044|consen 44 LTLEEFREIYASFFP-DGDASKYAELVFRTFDKNKDGTID 82 (193)
T ss_pred cCHHHHHHHHHHHCC-CCCHHHHHHHHHHHhcccCCCCcC
Confidence 4555555554 3467 666667788999999999999998
No 28
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=82.07 E-value=0.98 Score=38.85 Aligned_cols=31 Identities=10% Similarity=-0.109 Sum_probs=25.5
Q ss_pred hcCccchH----hHHHHHHHHHhhcCCCCCceeee
Q 047174 47 LKFPKIDD----SLRNCKAIFEKFGGLQNPLGVVI 77 (80)
Q Consensus 47 MkFPkide----~lr~~R~vFeqfDeDsnGti~~~ 77 (80)
..+|-+-| |++.||+|-.|.|.|.||+||+-
T Consensus 54 ~~~~c~s~~dklg~EAir~iHrqmDDD~nG~Id~~ 88 (575)
T KOG4403|consen 54 DAPECKSEQDKLGYEAIRDIHRQMDDDHNGSIDVE 88 (575)
T ss_pred CCchhhcccchhhHHHHHHHHHhcccccCCCcccc
Confidence 34554444 89999999999999999999973
No 29
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=81.30 E-value=1.5 Score=27.24 Aligned_cols=21 Identities=5% Similarity=-0.072 Sum_probs=18.3
Q ss_pred HHHHHHHHHhhcCCCCCceee
Q 047174 56 LRNCKAIFEKFGGLQNPLGVV 76 (80)
Q Consensus 56 lr~~R~vFeqfDeDsnGti~~ 76 (80)
-..++.+|+.+|.|.+|.|+.
T Consensus 51 ~~~v~~i~~~~D~d~~G~I~f 71 (92)
T cd05025 51 ADAVDKIMKELDENGDGEVDF 71 (92)
T ss_pred HHHHHHHHHHHCCCCCCcCcH
Confidence 356999999999999999974
No 30
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=80.94 E-value=1.5 Score=27.84 Aligned_cols=58 Identities=12% Similarity=0.163 Sum_probs=36.9
Q ss_pred hHHHHHHHHH---HHHHh-hcCC----cccchhhhhhc-Ccc---chHhHHHHHHHHHhhcCCCCCceee
Q 047174 19 TKLEAKMVEA---MQRRA-AEGT----ALKSFNSIILK-FPK---IDDSLRNCKAIFEKFGGLQNPLGVV 76 (80)
Q Consensus 19 ~kLe~KmvEa---m~~Ra-~~g~----s~KSfnSIiMk-FPk---ide~lr~~R~vFeqfDeDsnGti~~ 76 (80)
+.||+-|.++ .++-+ .-|. +..-+=.++.+ +|. -...-..+..+++++|.|.||.|+.
T Consensus 3 ~~le~a~~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf 72 (93)
T cd05026 3 TQLEGAMDTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDF 72 (93)
T ss_pred cHHHHHHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCH
Confidence 5677766655 55665 2232 44455555544 442 2224457999999999999999974
No 31
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=79.32 E-value=2.2 Score=27.30 Aligned_cols=26 Identities=15% Similarity=0.193 Sum_probs=20.4
Q ss_pred ccchHhHHHHHHHHHh-hcCCCCC-cee
Q 047174 50 PKIDDSLRNCKAIFEK-FGGLQNP-LGV 75 (80)
Q Consensus 50 Pkide~lr~~R~vFeq-fDeDsnG-ti~ 75 (80)
+..-.++.++..+|.+ +|.|.+| +|.
T Consensus 2 ~~le~~i~~l~~~F~~y~~~dg~~~~Ls 29 (89)
T cd05023 2 TETERCIESLIAVFQKYAGKDGDSYQLS 29 (89)
T ss_pred ChHHHHHHHHHHHHHHHhccCCCcCeEC
Confidence 3456788999999999 6787776 775
No 32
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=75.84 E-value=2.8 Score=30.48 Aligned_cols=30 Identities=20% Similarity=0.372 Sum_probs=23.3
Q ss_pred hhcCccch-HhHHHHHHHHHhhcCCCCCcee
Q 047174 46 ILKFPKID-DSLRNCKAIFEKFGGLQNPLGV 75 (80)
Q Consensus 46 iMkFPkid-e~lr~~R~vFeqfDeDsnGti~ 75 (80)
.+.|-.|+ +-...++..|.-||+|++|.|+
T Consensus 8 ~~~~~~~t~~qi~~lkeaF~l~D~d~~G~I~ 38 (160)
T COG5126 8 LLTFTQLTEEQIQELKEAFQLFDRDSDGLID 38 (160)
T ss_pred hhhcccCCHHHHHHHHHHHHHhCcCCCCCCc
Confidence 33444444 4568999999999999999986
No 33
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=74.41 E-value=3 Score=25.96 Aligned_cols=53 Identities=9% Similarity=0.150 Sum_probs=31.7
Q ss_pred HHHHHHHHHhh-c---C-Ccccchhhhhhc-Ccc---chHhHHHHHHHHHhhcCCCCCceee
Q 047174 24 KMVEAMQRRAA-E---G-TALKSFNSIILK-FPK---IDDSLRNCKAIFEKFGGLQNPLGVV 76 (80)
Q Consensus 24 KmvEam~~Ra~-~---g-~s~KSfnSIiMk-FPk---ide~lr~~R~vFeqfDeDsnGti~~ 76 (80)
.+.++.+.-.. . | -+...+=.++.. +|. +...-..+..+|+++|.|.+|.|+.
T Consensus 9 ~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f 70 (94)
T cd05031 9 SLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNF 70 (94)
T ss_pred HHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcH
Confidence 34555544443 2 3 344444444443 332 2334468999999999999999873
No 34
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=73.70 E-value=3 Score=26.15 Aligned_cols=21 Identities=19% Similarity=0.150 Sum_probs=18.0
Q ss_pred HHHHHHHHHhhcCCCCCceee
Q 047174 56 LRNCKAIFEKFGGLQNPLGVV 76 (80)
Q Consensus 56 lr~~R~vFeqfDeDsnGti~~ 76 (80)
=..+..+|.++|.|.+|.|+.
T Consensus 50 ~~~v~~i~~~~D~d~dG~I~f 70 (88)
T cd05030 50 QKAIDKIFEDLDTNQDGQLSF 70 (88)
T ss_pred HHHHHHHHHHcCCCCCCcCcH
Confidence 356889999999999999873
No 35
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=73.01 E-value=3.2 Score=28.16 Aligned_cols=22 Identities=9% Similarity=-0.026 Sum_probs=18.4
Q ss_pred HhHHHHHHHHHhhcCCCCCcee
Q 047174 54 DSLRNCKAIFEKFGGLQNPLGV 75 (80)
Q Consensus 54 e~lr~~R~vFeqfDeDsnGti~ 75 (80)
+--..++-.|.++|.|.||.|+
T Consensus 45 ~~~~~l~w~F~~lD~d~DG~Ls 66 (116)
T cd00252 45 MCKDPVGWMFNQLDGNYDGKLS 66 (116)
T ss_pred HHHHHHHHHHHHHCCCCCCcCC
Confidence 3446678999999999999886
No 36
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=70.95 E-value=4 Score=25.94 Aligned_cols=56 Identities=16% Similarity=0.229 Sum_probs=34.4
Q ss_pred hHHHHH---HHHHHHHHhh-cC----Ccccchhhhhhc----CccchHhHHHHHHHHHhhcCCCCCceee
Q 047174 19 TKLEAK---MVEAMQRRAA-EG----TALKSFNSIILK----FPKIDDSLRNCKAIFEKFGGLQNPLGVV 76 (80)
Q Consensus 19 ~kLe~K---mvEam~~Ra~-~g----~s~KSfnSIiMk----FPkide~lr~~R~vFeqfDeDsnGti~~ 76 (80)
+.||+- +|+..++.+. .| -+..-|=.++.+ -.++ +-..+..+|++.|.|++|.|+.
T Consensus 3 ~~~e~~~~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~--t~~ev~~m~~~~D~d~dG~Idf 70 (88)
T cd05029 3 SPLDQAIGLLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKL--QDAEIAKLMEDLDRNKDQEVNF 70 (88)
T ss_pred cHHHHHHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHhcCCCCCCCcH
Confidence 445554 4555666665 23 233334445532 2333 3368899999999999999974
No 37
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=70.57 E-value=10 Score=23.57 Aligned_cols=21 Identities=5% Similarity=-0.344 Sum_probs=18.3
Q ss_pred HHHHHHHHHhhcCCCCCceee
Q 047174 56 LRNCKAIFEKFGGLQNPLGVV 76 (80)
Q Consensus 56 lr~~R~vFeqfDeDsnGti~~ 76 (80)
-..++.+|..+|.|.+|+|+.
T Consensus 43 ~~ev~~i~~~~d~~~~g~I~~ 63 (96)
T smart00027 43 QTLLAKIWNLADIDNDGELDK 63 (96)
T ss_pred HHHHHHHHHHhcCCCCCCcCH
Confidence 367899999999999999874
No 38
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=66.55 E-value=5.3 Score=25.51 Aligned_cols=20 Identities=5% Similarity=-0.157 Sum_probs=17.1
Q ss_pred HHHHHHHHhhcCCCCCceee
Q 047174 57 RNCKAIFEKFGGLQNPLGVV 76 (80)
Q Consensus 57 r~~R~vFeqfDeDsnGti~~ 76 (80)
..+..+|+.+|.|+||.|+.
T Consensus 52 ~~~~~ll~~~D~d~DG~I~f 71 (89)
T cd05023 52 GVLDRMMKKLDLNSDGQLDF 71 (89)
T ss_pred HHHHHHHHHcCCCCCCcCcH
Confidence 45778999999999999873
No 39
>COG3382 Solo B3/4 domain (OB-fold DNA/RNA-binding) of Phe-aaRS-beta [General function prediction only]
Probab=60.53 E-value=6.2 Score=30.50 Aligned_cols=21 Identities=33% Similarity=0.629 Sum_probs=19.3
Q ss_pred HHHHHHHhhcCCcccchhhhh
Q 047174 26 VEAMQRRAAEGTALKSFNSII 46 (80)
Q Consensus 26 vEam~~Ra~~g~s~KSfnSIi 46 (80)
.|||++|...|.++-|+|+++
T Consensus 84 ~EALlrRv~kg~~lp~InpvV 104 (229)
T COG3382 84 AEALLRRVLKGNSLPRINPVV 104 (229)
T ss_pred HHHHHHHHHcCCCccccchhh
Confidence 699999999999999998876
No 40
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=60.07 E-value=4.3 Score=30.14 Aligned_cols=18 Identities=11% Similarity=-0.084 Sum_probs=14.8
Q ss_pred HHHHHHHhhcCCCCCcee
Q 047174 58 NCKAIFEKFGGLQNPLGV 75 (80)
Q Consensus 58 ~~R~vFeqfDeDsnGti~ 75 (80)
+.+-.|+.||.|.||.|+
T Consensus 101 kl~w~F~lyD~dgdG~It 118 (193)
T KOG0044|consen 101 KLKWAFRLYDLDGDGYIT 118 (193)
T ss_pred HhhhhheeecCCCCceEc
Confidence 344669999999999886
No 41
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=53.50 E-value=6.5 Score=28.56 Aligned_cols=25 Identities=12% Similarity=0.093 Sum_probs=20.5
Q ss_pred hHhHHHHHHHHHhhcCCCCCceeee
Q 047174 53 DDSLRNCKAIFEKFGGLQNPLGVVI 77 (80)
Q Consensus 53 de~lr~~R~vFeqfDeDsnGti~~~ 77 (80)
.+.-+.++.-|+-||.|.+|.|.+-
T Consensus 88 ~~~~Eel~~aF~~fD~d~dG~Is~~ 112 (160)
T COG5126 88 GDKEEELREAFKLFDKDHDGYISIG 112 (160)
T ss_pred CCcHHHHHHHHHHhCCCCCceecHH
Confidence 3446788999999999999999753
No 42
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=52.04 E-value=14 Score=29.82 Aligned_cols=16 Identities=13% Similarity=0.113 Sum_probs=7.5
Q ss_pred HHHHHHhhcCCCCCce
Q 047174 59 CKAIFEKFGGLQNPLG 74 (80)
Q Consensus 59 ~R~vFeqfDeDsnGti 74 (80)
+..+|+++|.|.+|.|
T Consensus 359 ~~~~F~~~D~d~DG~I 374 (391)
T PRK12309 359 SDAVFDALDLNHDGKI 374 (391)
T ss_pred HHHHHHHhCCCCCCCC
Confidence 3444444444444444
No 43
>PF04367 DUF502: Protein of unknown function (DUF502); InterPro: IPR007462 This entry contains proteins that are predicted to be integral membrane proteins.
Probab=51.23 E-value=14 Score=24.23 Aligned_cols=37 Identities=16% Similarity=0.306 Sum_probs=31.7
Q ss_pred CcccchhhhhhcCccchHhHHHHHHHHHhhcCCCCCc
Q 047174 37 TALKSFNSIILKFPKIDDSLRNCKAIFEKFGGLQNPL 73 (80)
Q Consensus 37 ~s~KSfnSIiMkFPkide~lr~~R~vFeqfDeDsnGt 73 (80)
.-++-+|.++.|.|-++-=-..+|++.+.+..|+...
T Consensus 22 ~l~~~~e~ll~riP~v~~iY~~~k~~~~~~~~~~~~~ 58 (108)
T PF04367_consen 22 WLLNWLERLLQRIPLVKSIYSSIKQLVESFSGDKKKS 58 (108)
T ss_pred HHHHHHHHHHHHCCchHHHHHHHHHHHHHHhhccccc
Confidence 5567789999999999999999999999997777663
No 44
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=50.49 E-value=18 Score=22.20 Aligned_cols=24 Identities=13% Similarity=0.065 Sum_probs=16.2
Q ss_pred chHhHHHHHHHHHhhcCCCCCcee
Q 047174 52 IDDSLRNCKAIFEKFGGLQNPLGV 75 (80)
Q Consensus 52 ide~lr~~R~vFeqfDeDsnGti~ 75 (80)
|+..=..++.+|++.|.+.+|+++
T Consensus 16 I~~~~~yA~~LFq~~D~s~~g~Le 39 (51)
T PF14788_consen 16 IEMDDEYARQLFQECDKSQSGRLE 39 (51)
T ss_dssp ----HHHHHHHHHHH-SSSSSEBE
T ss_pred cCcCHHHHHHHHHHhcccCCCCcc
Confidence 344445678899999999999876
No 45
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=48.14 E-value=10 Score=33.26 Aligned_cols=39 Identities=21% Similarity=0.221 Sum_probs=28.7
Q ss_pred CcccchhhhhhcCccch-----------HhHHHHHHHHHhhcCCCCCceee
Q 047174 37 TALKSFNSIILKFPKID-----------DSLRNCKAIFEKFGGLQNPLGVV 76 (80)
Q Consensus 37 ~s~KSfnSIiMkFPkid-----------e~lr~~R~vFeqfDeDsnGti~~ 76 (80)
+.=+..++-.+- |.|+ ++.+-+.++|++||.|.||..-+
T Consensus 285 ~DsleL~~~~l~-p~~~~~p~~s~ELs~~~~~Fl~~~f~~~D~d~Dg~L~p 334 (625)
T KOG1707|consen 285 TDSLELTDEYLP-PRLKVPPDQSVELSPKGYRFLVDVFEKFDRDNDGALSP 334 (625)
T ss_pred cchhhhhhhhcC-ccccCCCCcceeccHHHHHHHHHHHHhccCCCCCCcCH
Confidence 444455554444 7764 68889999999999999997654
No 46
>TIGR03296 M6dom_TIGR03296 M6 family metalloprotease domain. This model describes a metalloproteinase domain, with a characteristic HExxH motif. Examples of this domain are found in proteins in the family of immune inhibitor A, which cleaves antibacterial peptides, and in other, only distantly related proteases. This model is built to be broader and more inclusive than Pfam model pfam05547.
Probab=48.00 E-value=8.4 Score=29.07 Aligned_cols=15 Identities=7% Similarity=-0.175 Sum_probs=13.7
Q ss_pred HHHhhcCCCCCceee
Q 047174 62 IFEKFGGLQNPLGVV 76 (80)
Q Consensus 62 vFeqfDeDsnGti~~ 76 (80)
-|.+||.|.||.||.
T Consensus 91 df~~yD~dgDG~vd~ 105 (286)
T TIGR03296 91 DFDRYDLDGDGNFDE 105 (286)
T ss_pred ccccccccCCCccCC
Confidence 578999999999998
No 47
>PLN02964 phosphatidylserine decarboxylase
Probab=47.35 E-value=14 Score=31.98 Aligned_cols=39 Identities=10% Similarity=0.136 Sum_probs=25.5
Q ss_pred CcccchhhhhhcCccchHhHHHHHHHHHhhcCCCCCceee
Q 047174 37 TALKSFNSIILKFPKIDDSLRNCKAIFEKFGGLQNPLGVV 76 (80)
Q Consensus 37 ~s~KSfnSIiMkFPkide~lr~~R~vFeqfDeDsnGti~~ 76 (80)
-++..|=+++..+.. ...-+.++.+|+.||.|.+|.|..
T Consensus 196 IdfdEFl~lL~~lg~-~~seEEL~eaFk~fDkDgdG~Is~ 234 (644)
T PLN02964 196 LSFSEFSDLIKAFGN-LVAANKKEELFKAADLNGDGVVTI 234 (644)
T ss_pred EcHHHHHHHHHHhcc-CCCHHHHHHHHHHhCCCCCCcCCH
Confidence 444445444454432 123456999999999999999864
No 48
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=45.79 E-value=20 Score=29.05 Aligned_cols=50 Identities=10% Similarity=0.004 Sum_probs=31.4
Q ss_pred HHHHHHHHHHhhcCCc----ccchhhhhhcCccchHhHHHHHHHHHhhcCCCCCcee
Q 047174 23 AKMVEAMQRRAAEGTA----LKSFNSIILKFPKIDDSLRNCKAIFEKFGGLQNPLGV 75 (80)
Q Consensus 23 ~KmvEam~~Ra~~g~s----~KSfnSIiMkFPkide~lr~~R~vFeqfDeDsnGti~ 75 (80)
-|+.|.+|.-+..... +++-=+-|-++|-+... ++.+|.-||.|.||.|+
T Consensus 299 ekl~egi~~F~~d~~~L~~~i~~~~~~~~~~~~~~~~---l~~aF~~~D~dgdG~Is 352 (391)
T PRK12309 299 EKLDEGIKGFSKALETLEKLLAHRLARLEGGEAFTHA---AQEIFRLYDLDGDGFIT 352 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHH---HHHHHHHhCCCCCCcCc
Confidence 4556666655543322 22222346667777655 56689999999999884
No 49
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=43.21 E-value=21 Score=30.44 Aligned_cols=28 Identities=4% Similarity=0.016 Sum_probs=22.7
Q ss_pred ccchHhHHHHHHHHHhhcCCCCCceeee
Q 047174 50 PKIDDSLRNCKAIFEKFGGLQNPLGVVI 77 (80)
Q Consensus 50 Pkide~lr~~R~vFeqfDeDsnGti~~~ 77 (80)
+--.|.=..+|.+|+.||.+.||.+|+-
T Consensus 7 ~~~~er~~r~~~lf~~lD~~~~g~~d~~ 34 (463)
T KOG0036|consen 7 ETDEERDIRIRCLFKELDSKNDGQVDLD 34 (463)
T ss_pred CCcHHHHHHHHHHHHHhccCCCCceeHH
Confidence 3445566789999999999999999863
No 50
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=43.03 E-value=18 Score=26.51 Aligned_cols=23 Identities=13% Similarity=0.083 Sum_probs=17.6
Q ss_pred HhHHH-HHHHHHhhcCCCCCceee
Q 047174 54 DSLRN-CKAIFEKFGGLQNPLGVV 76 (80)
Q Consensus 54 e~lr~-~R~vFeqfDeDsnGti~~ 76 (80)
|.+.. +.-+|++||.|++|.|+.
T Consensus 143 e~~~~i~d~t~~e~D~d~DG~Isf 166 (187)
T KOG0034|consen 143 EQLEDIVDKTFEEADTDGDGKISF 166 (187)
T ss_pred HHHHHHHHHHHHHhCCCCCCcCcH
Confidence 44433 567899999999999974
No 51
>PF09631 Sen15: Sen15 protein; InterPro: IPR018593 The Sen15 subunit of the tRNA intron-splicing endonuclease is one of the two structural subunits of this heterotetrameric enzyme. Residues 36-157 of this subunit possess a novel homodimeric fold. Each monomer consists of three alpha-helices and a mixed antiparallel/parallel beta-sheet. Two monomers of Sen15 fold with two monomers of Sen34, one of the two catalytic subunits, to form an alpha2-beta2 tetramer as part of the functional endonuclease assembly []. ; PDB: 2GW6_B.
Probab=42.12 E-value=17 Score=23.59 Aligned_cols=13 Identities=23% Similarity=0.514 Sum_probs=11.1
Q ss_pred hHHHHHHHHHhhc
Q 047174 55 SLRNCKAIFEKFG 67 (80)
Q Consensus 55 ~lr~~R~vFeqfD 67 (80)
+|+.++.+|++..
T Consensus 54 s~~~i~~~f~~l~ 66 (101)
T PF09631_consen 54 SLEQIDEVFDSLP 66 (101)
T ss_dssp EHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhc
Confidence 5889999999976
No 52
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=37.84 E-value=30 Score=23.01 Aligned_cols=19 Identities=5% Similarity=-0.006 Sum_probs=16.7
Q ss_pred HHHHHHHHhhcCCCCCcee
Q 047174 57 RNCKAIFEKFGGLQNPLGV 75 (80)
Q Consensus 57 r~~R~vFeqfDeDsnGti~ 75 (80)
..|..+|+.-|.|.+|.||
T Consensus 48 ~~vd~im~~LD~n~Dg~vd 66 (91)
T cd05024 48 MAVDKIMKDLDDCRDGKVG 66 (91)
T ss_pred HHHHHHHHHhCCCCCCcCc
Confidence 3588899999999999987
No 53
>PF10384 Scm3: Centromere protein Scm3; InterPro: IPR018465 The centromere protein Scm3 is a non-histone component of centromeric chromatin that binds to CenH3-H4 histones, which are required for kinetochore assembly. Scm3 is required for Cse4 localisation and is required for its centromeric association [, ]. The histone H3 variant Cse4 replaces conventional histone H3 in centromeric chromatin and helps direct the assembly of the kinetochore. In addition, Scm3 has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for G2/M progression []. Scm3 is required to maintain kinetochore function throughout the cell cycle. Scm3 contains a nuclear export signal (NES). The N-terminal region of Scm3 is well conserved and functions as the CenH3-interacting domain, while the C-terminal region is variable in size and sometimes consists of DNA binding motifs [].; GO: 0005634 nucleus; PDB: 3R45_C 2YFV_C 2L5A_A.
Probab=36.86 E-value=38 Score=20.98 Aligned_cols=20 Identities=35% Similarity=0.439 Sum_probs=10.6
Q ss_pred HHHHHhhcC-CCCCceeeeee
Q 047174 60 KAIFEKFGG-LQNPLGVVIAL 79 (80)
Q Consensus 60 R~vFeqfDe-DsnGti~~~~~ 79 (80)
..||++|.. |-.+..|.|-|
T Consensus 19 e~I~~KY~~~d~~~~~DeIDL 39 (58)
T PF10384_consen 19 ESIIEKYGQPDFEDQGDEIDL 39 (58)
T ss_dssp HHHHHHHCSG-TCCSSEBCTT
T ss_pred HHHHHHhcCcccCCccceeec
Confidence 456666655 55555555544
No 54
>PLN02964 phosphatidylserine decarboxylase
Probab=35.37 E-value=35 Score=29.71 Aligned_cols=21 Identities=5% Similarity=-0.048 Sum_probs=14.4
Q ss_pred HhHHHHHHHHHhhcCCCCCce
Q 047174 54 DSLRNCKAIFEKFGGLQNPLG 74 (80)
Q Consensus 54 e~lr~~R~vFeqfDeDsnGti 74 (80)
.-++.++.+|+.||.|++|.|
T Consensus 140 kqi~elkeaF~lfD~dgdG~i 160 (644)
T PLN02964 140 QEPESACESFDLLDPSSSNKV 160 (644)
T ss_pred HHHHHHHHHHHHHCCCCCCcC
Confidence 345667777777777777765
No 55
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=35.35 E-value=39 Score=25.48 Aligned_cols=38 Identities=16% Similarity=0.222 Sum_probs=28.7
Q ss_pred Ccccchhhh-hhcCccchHhHHHHHHHHHhhcCCCCCcee
Q 047174 37 TALKSFNSI-ILKFPKIDDSLRNCKAIFEKFGGLQNPLGV 75 (80)
Q Consensus 37 ~s~KSfnSI-iMkFPkide~lr~~R~vFeqfDeDsnGti~ 75 (80)
-++-+|... .-++-.=| ....|+..|.-||-|.+|.|-
T Consensus 86 i~fe~f~~~mt~k~~e~d-t~eEi~~afrl~D~D~~Gkis 124 (172)
T KOG0028|consen 86 ITFEDFRRVMTVKLGERD-TKEEIKKAFRLFDDDKTGKIS 124 (172)
T ss_pred echHHHHHHHHHHHhccC-cHHHHHHHHHcccccCCCCcC
Confidence 455555544 45666666 889999999999999999874
No 56
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=34.97 E-value=31 Score=27.02 Aligned_cols=44 Identities=25% Similarity=0.360 Sum_probs=31.9
Q ss_pred cCchhHHHHHHHHHHHHHhhcC-CcccchhhhhhcCccchHhHHHH----HHHHHhh
Q 047174 15 WMPETKLEAKMVEAMQRRAAEG-TALKSFNSIILKFPKIDDSLRNC----KAIFEKF 66 (80)
Q Consensus 15 ~~~e~kLe~KmvEam~~Ra~~g-~s~KSfnSIiMkFPkide~lr~~----R~vFeqf 66 (80)
..+|+|+|+|=.|. +|+... .+++|+- |-|=+-++++ ...|++|
T Consensus 193 ~~Le~KIekkk~EL--ER~qKRL~sLq~vR------PAfmdEyEklE~EL~~lY~~Y 241 (267)
T PF10234_consen 193 ANLEAKIEKKKQEL--ERNQKRLQSLQSVR------PAFMDEYEKLEEELQKLYEIY 241 (267)
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHhcC------hHHHHHHHHHHHHHHHHHHHH
Confidence 47899999999999 898877 7777775 6665655554 3445544
No 57
>PF09422 WTX: WTX protein; InterPro: IPR019003 This entry contains proteins that have no known function. The entry includes the WTX protein, which is an X chromosome gene; Wilms' tumor gene on the X chromosome (WTX) []. WTX protein is a protein encoded by a gene mutated in Wilms tumors and it forms a complex with beta-catenin, AXIN1 and beta-TrCP2 (beta-transducin repeat-containing protein 2) []. The WTX protein is found to be inactivated in one third of Wilms' tumours [].
Probab=34.52 E-value=12 Score=31.79 Aligned_cols=22 Identities=36% Similarity=0.536 Sum_probs=18.8
Q ss_pred CcccchhhhhhcCccchHhHHHHHHHHHhhcCC
Q 047174 37 TALKSFNSIILKFPKIDDSLRNCKAIFEKFGGL 69 (80)
Q Consensus 37 ~s~KSfnSIiMkFPkide~lr~~R~vFeqfDeD 69 (80)
++||||||++ -|=+||.--|+|
T Consensus 247 tSLKSFDSLT-----------GCGdIiAdqe~d 268 (471)
T PF09422_consen 247 TSLKSFDSLT-----------GCGDIIADQEDD 268 (471)
T ss_pred Hhhhcccccc-----------ccchhccccchh
Confidence 8999999865 688999888887
No 58
>PF07994 NAD_binding_5: Myo-inositol-1-phosphate synthase; InterPro: IPR002587 1L-myo-Inositol-1-phosphate synthase (5.5.1.4 from EC) catalyzes the conversion of D-glucose 6-phosphate to 1L-myo-inositol-1-phosphate, the first committed step in the production of all inositol-containing compounds, including phospholipids, either directly or by salvage. The enzyme exists in a cytoplasmic form in a wide range of plants, animals, and fungi. It has also been detected in several bacteria and a chloroplast form is observed in alga and higher plants. Inositol phosphates play an important role in signal transduction. In Saccharomyces cerevisiae (Baker's yeast), the transcriptional regulation of the INO1 gene has been studied in detail [] and its expression is sensitive to the availability of phospholipid precursors as well as growth phase. The regulation of the structural gene encoding 1L-myo-inositol-1-phosphate synthase has also been analyzed at the transcriptional level in the aquatic angiosperm, Spirodela polyrrhiza (Giant duckweed) and the halophyte, Mesembryanthemum crystallinum (Common ice plant) [].; GO: 0004512 inositol-3-phosphate synthase activity, 0006021 inositol biosynthetic process, 0008654 phospholipid biosynthetic process; PDB: 1GR0_A 1P1K_B 1LA2_B 1RM0_B 1P1I_B 1JKF_A 1P1F_A 1P1J_B 1JKI_B 1P1H_A ....
Probab=34.24 E-value=19 Score=28.12 Aligned_cols=42 Identities=19% Similarity=0.408 Sum_probs=28.0
Q ss_pred HHHHHHHHHhhcCCcccchhhhhhcCccchHhHHHHHHHHHhhc
Q 047174 24 KMVEAMQRRAAEGTALKSFNSIILKFPKIDDSLRNCKAIFEKFG 67 (80)
Q Consensus 24 KmvEam~~Ra~~g~s~KSfnSIiMkFPkide~lr~~R~vFeqfD 67 (80)
++++..++|--.| +-++.|..||=|.-..+.....++|+||.
T Consensus 247 rl~~la~r~g~~G--v~~~ls~ffK~P~~~~g~~~~~~l~~q~~ 288 (295)
T PF07994_consen 247 RLAKLALRRGMGG--VQEWLSFFFKSPMVPPGPPQEHDLFEQYE 288 (295)
T ss_dssp HHHHHHHHTTS-E--EHHHHHHHBSS-T--TTSTT--HHHHHHH
T ss_pred HHHHHHHHcCCCC--hhHHHHHHhcCCCccCCCCCCCcHHHHHH
Confidence 4455555554555 99999999999998888888888988884
No 59
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=33.05 E-value=40 Score=25.03 Aligned_cols=24 Identities=17% Similarity=0.079 Sum_probs=20.1
Q ss_pred hHhHHHHHHHHHhhcCCCCCceee
Q 047174 53 DDSLRNCKAIFEKFGGLQNPLGVV 76 (80)
Q Consensus 53 de~lr~~R~vFeqfDeDsnGti~~ 76 (80)
.+.+..+|++|.-||...+|-|+.
T Consensus 7 ~d~~~e~ke~F~lfD~~gD~ki~~ 30 (152)
T KOG0030|consen 7 PDQMEEFKEAFLLFDRTGDGKISG 30 (152)
T ss_pred cchHHHHHHHHHHHhccCcccccH
Confidence 355688999999999999998863
No 60
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=32.89 E-value=28 Score=26.25 Aligned_cols=27 Identities=19% Similarity=0.037 Sum_probs=22.4
Q ss_pred cchHhHHHHHHHHHhhcCCCCCceeee
Q 047174 51 KIDDSLRNCKAIFEKFGGLQNPLGVVI 77 (80)
Q Consensus 51 kide~lr~~R~vFeqfDeDsnGti~~~ 77 (80)
.--+.=++++..|+-||.|..|+||+-
T Consensus 27 l~~~q~q~i~e~f~lfd~~~~g~iD~~ 53 (172)
T KOG0028|consen 27 LTEEQKQEIKEAFELFDPDMAGKIDVE 53 (172)
T ss_pred ccHHHHhhHHHHHHhhccCCCCcccHH
Confidence 334555899999999999999999963
No 61
>PF01023 S_100: S-100/ICaBP type calcium binding domain; InterPro: IPR013787 The calcium-binding domain found in S100 and CaBP-9k proteins is a subfamily of the EF-hand calcium-binding domain []. S100s are small dimeric acidic calcium and zinc-binding proteins abundant in the brain, with S100B playing an important role in modulating the proliferation and differentiation of neurons and glia cells []. S100 proteins have two different types of calcium-binding sites: a low affinity one with a special structure, and a 'normal' EF-hand type high-affinity site. Calbindin-D9k (CaBP-9k) also belong to this family of proteins, but it does not form dimers. CaBP-9k is a cytosolic protein expressed in a variety of tissues. Although its precise function is unknown, it appears to be under the control of the steroid hormones oestrogen and progesterone in the female reproductive system []. In the intestine, CaBP-9k may be involved in calcium absorption by mediating intracellular diffusion []. This entry represents a subdomain of the calcium-binding domain found in S100, CaBP-9k, and related proteins.; PDB: 2RGI_A 4DUQ_B 2KAY_B 2KAX_A 2CNP_A 1CNP_A 1A03_A 1JWD_B 2JTT_A 1XK4_B ....
Probab=30.31 E-value=69 Score=18.36 Aligned_cols=13 Identities=15% Similarity=0.529 Sum_probs=11.3
Q ss_pred HhHHHHHHHHHhh
Q 047174 54 DSLRNCKAIFEKF 66 (80)
Q Consensus 54 e~lr~~R~vFeqf 66 (80)
.++..+-.||.||
T Consensus 3 ~ai~~iI~vFhkY 15 (44)
T PF01023_consen 3 KAIETIIDVFHKY 15 (44)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5678889999999
No 62
>cd06399 PB1_P40 The PB1 domain is essential part of the p40 adaptor protein which plays an important role in activating phagocyte NADPH oxidase during phagocytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes , such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The PB1 domain of p40 represents a type I PB1 domain which interacts with the PB1 domain of oxidase activator p67 w
Probab=29.51 E-value=34 Score=23.59 Aligned_cols=21 Identities=19% Similarity=0.241 Sum_probs=18.7
Q ss_pred hcCccchHhHHHHHHHHHhhc
Q 047174 47 LKFPKIDDSLRNCKAIFEKFG 67 (80)
Q Consensus 47 MkFPkide~lr~~R~vFeqfD 67 (80)
-.-|.|++-|.-+|.+|++.|
T Consensus 25 ~~~P~~kdLl~lmr~~f~~~d 45 (92)
T cd06399 25 SSTPLLKDLLELTRREFQRED 45 (92)
T ss_pred ccCccHHHHHHHHHHHhchhh
Confidence 346999999999999999987
No 63
>PF10923 DUF2791: P-loop Domain of unknown function (DUF2791); InterPro: IPR021228 This is a family of proteins found in archaea and bacteria. Some of the proteins in this family are annotated as being methyl-accepting chemotaxis proteins and ATP/GTP binding proteins.
Probab=29.21 E-value=88 Score=25.80 Aligned_cols=46 Identities=17% Similarity=0.358 Sum_probs=38.0
Q ss_pred HHHHHHHHhhcC----CcccchhhhhhcCccchH-----hHHHHHHHHHhhcCCC
Q 047174 25 MVEAMQRRAAEG----TALKSFNSIILKFPKIDD-----SLRNCKAIFEKFGGLQ 70 (80)
Q Consensus 25 mvEam~~Ra~~g----~s~KSfnSIiMkFPkide-----~lr~~R~vFeqfDeDs 70 (80)
--+||++|-... ..+.++.+.+.+++.|+. -++++|+||.+.+...
T Consensus 302 sY~AL~~RL~~~~~~~~~~~n~~~pvIrL~~l~~eel~~l~~klr~i~a~~~~~~ 356 (416)
T PF10923_consen 302 SYEALAQRLAEEFFADDGFDNLRAPVIRLQPLTPEELLELLEKLRDIYAEAYGYE 356 (416)
T ss_pred ccHHHHHHHhccccccccccCccCceecCCCCCHHHHHHHHHHHHHHHHhhCCCC
Confidence 357899998643 578888999999999987 7899999999987654
No 64
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=29.15 E-value=50 Score=15.29 Aligned_cols=11 Identities=18% Similarity=0.588 Sum_probs=8.8
Q ss_pred HHHHHHHHHhh
Q 047174 56 LRNCKAIFEKF 66 (80)
Q Consensus 56 lr~~R~vFeqf 66 (80)
.+.+|.||++.
T Consensus 3 ~~~~r~i~e~~ 13 (33)
T smart00386 3 IERARKIYERA 13 (33)
T ss_pred HHHHHHHHHHH
Confidence 56788999885
No 65
>PF13767 DUF4168: Domain of unknown function (DUF4168)
Probab=28.25 E-value=27 Score=21.55 Aligned_cols=38 Identities=24% Similarity=0.348 Sum_probs=27.7
Q ss_pred CCCCccccCchhHHHHHHHHHHHHHhhcCCcccchhhhhhc
Q 047174 8 PESTTSAWMPETKLEAKMVEAMQRRAAEGTALKSFNSIILK 48 (80)
Q Consensus 8 ~~s~~k~~~~e~kLe~KmvEam~~Ra~~g~s~KSfnSIiMk 48 (80)
|..|.+...+...-..+|++++ ...|=++-.||.|...
T Consensus 30 ~~~~~~~~~l~~~a~~~~~~~I---~~~GLtv~~fN~I~~~ 67 (78)
T PF13767_consen 30 AEDPEEIQELQEEAQEEMVEAI---EENGLTVERFNEITQA 67 (78)
T ss_pred ccCHHHHHHHHHHHHHHHHHHH---HHcCCCHHHHHHHHHH
Confidence 4444445566677788888886 5678889999999764
No 66
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=28.09 E-value=22 Score=17.00 Aligned_cols=15 Identities=27% Similarity=0.722 Sum_probs=11.0
Q ss_pred CcccchhhhhhcCcc
Q 047174 37 TALKSFNSIILKFPK 51 (80)
Q Consensus 37 ~s~KSfnSIiMkFPk 51 (80)
...+.|+.+|-+||.
T Consensus 18 ~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 18 EAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHCcC
Confidence 566777788888774
No 67
>PF08987 DUF1892: Protein of unknown function (DUF1892); InterPro: IPR015080 Proteins in this entry, which are synthesised by Saccharomycetes, adopt a structure consisting of a four-stranded beta-sheet, with strand order beta2-beta1-beta4-beta3, and two alpha-helices, with an overall topology of beta-beta-alpha-beta-beta-alpha. They have no known function []. ; PDB: 1N6Z_A.
Probab=28.08 E-value=40 Score=23.99 Aligned_cols=36 Identities=28% Similarity=0.385 Sum_probs=23.8
Q ss_pred chhhhhhcCccchHhHHHHHHHHHhhcC--------------CCCCceeeee
Q 047174 41 SFNSIILKFPKIDDSLRNCKAIFEKFGG--------------LQNPLGVVIA 78 (80)
Q Consensus 41 SfnSIiMkFPkide~lr~~R~vFeqfDe--------------DsnGti~~~~ 78 (80)
=+|++|+-| ==..|+.+-.-|++||| -|+|-|++|.
T Consensus 38 fvDel~lpf--~v~~~d~lN~wFDkFDEeIciPNEGhIKYEI~SDGLVVlil 87 (115)
T PF08987_consen 38 FVDELILPF--QVDEFDELNEWFDKFDEEICIPNEGHIKYEIGSDGLVVLIL 87 (115)
T ss_dssp EEEEEEE-----TT-HHHHHHHHHHHHHHHHTT--S-EEEEEETTTEEEEEE
T ss_pred HHHhccccc--ccchHHHHHHHHHhhcceeecCCCCceEEEecCCcEEEEEE
Confidence 356655433 34578888899999987 3888888874
No 68
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=27.56 E-value=50 Score=18.55 Aligned_cols=11 Identities=27% Similarity=0.869 Sum_probs=9.6
Q ss_pred HHHHHHHHHhh
Q 047174 56 LRNCKAIFEKF 66 (80)
Q Consensus 56 lr~~R~vFeqf 66 (80)
++..|+|||+|
T Consensus 3 ~dRAR~IyeR~ 13 (32)
T PF02184_consen 3 FDRARSIYERF 13 (32)
T ss_pred HHHHHHHHHHH
Confidence 57789999998
No 69
>PF03520 KCNQ_channel: KCNQ voltage-gated potassium channel; InterPro: IPR013821 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. KCNQ channels (also known as KQT-like channels) differ from other voltage-gated 6 TM helix channels, chiefly in that they possess no tetramerisation domain. Consequently, they rely on interaction with accessory subunits, or form heterotetramers with other members of the family []. Currently, 5 members of the KCNQ family are known. These have been found to be widely distributed within the body, having been shown to be expressed in the heart, brain, pancreas, lung, placenta and ear. They were initially cloned as a result of a search for proteins involved in cardiac arhythmia. Subsequently, mutations in other KCNQ family members have been shown to be responsible for some forms of hereditary deafness [] and benign familial neonatal epilepsy []. This entry represents a region found at the C terminus of these proteins.; PDB: 3HFE_B 3HFC_C 3BJ4_B 2OVC_A.
Probab=27.37 E-value=21 Score=27.47 Aligned_cols=28 Identities=25% Similarity=0.445 Sum_probs=0.0
Q ss_pred hhcC----ccchHhHH--HHHHHHHhhcCCCCCceee
Q 047174 46 ILKF----PKIDDSLR--NCKAIFEKFGGLQNPLGVV 76 (80)
Q Consensus 46 iMkF----Pkide~lr--~~R~vFeqfDeDsnGti~~ 76 (80)
+||| -||+|+|| +|++|-||| |-|-.|+
T Consensus 79 ~~k~~varrkFkealrPYDVkDViEQY---SaGHldm 112 (202)
T PF03520_consen 79 KMKFFVARRKFKEALRPYDVKDVIEQY---SAGHLDM 112 (202)
T ss_dssp -------------------------------------
T ss_pred HHHHHHHHHHHHhhcCcccHHHHHHHH---hhhHHHH
Confidence 4565 58999998 799999999 4454443
No 70
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=27.23 E-value=33 Score=22.87 Aligned_cols=20 Identities=10% Similarity=-0.071 Sum_probs=12.4
Q ss_pred HHHHHHHHhhcCCCCCceee
Q 047174 57 RNCKAIFEKFGGLQNPLGVV 76 (80)
Q Consensus 57 r~~R~vFeqfDeDsnGti~~ 76 (80)
.-+.=.|.|.|.|.||.++-
T Consensus 54 ~~~~W~F~~LD~n~d~~L~~ 73 (113)
T PF10591_consen 54 RVVHWKFCQLDRNKDGVLDR 73 (113)
T ss_dssp HHHHHHHHHH--T-SSEE-T
T ss_pred hhhhhhHhhhcCCCCCccCH
Confidence 34566799999999998763
No 71
>PF05465 Halo_GVPC: Halobacterial gas vesicle protein C (GVPC) repeat; InterPro: IPR008639 This family consists of Halobacterium gas vesicle protein C sequences which are thought to confer stability to the gas vesicle membranes [,].; GO: 0031412 gas vesicle organization, 0031411 gas vesicle
Probab=25.28 E-value=42 Score=18.53 Aligned_cols=18 Identities=11% Similarity=0.455 Sum_probs=14.4
Q ss_pred cchHhHHHHHHHHHhhcC
Q 047174 51 KIDDSLRNCKAIFEKFGG 68 (80)
Q Consensus 51 kide~lr~~R~vFeqfDe 68 (80)
-+.+.++..++.|+.|=+
T Consensus 10 ~~r~~f~~~~~aF~aY~~ 27 (32)
T PF05465_consen 10 EFREEFDDTQDAFEAYAD 27 (32)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 456789999999999843
No 72
>PF08338 DUF1731: Domain of unknown function (DUF1731); InterPro: IPR013549 This domain of unknown function appears towards the C terminus of proteins of the NAD dependent epimerase/dehydratase family (IPR001509 from INTERPRO) in bacteria, eukaryotes and archaea. Many of the proteins in which it is found are involved in cell-division inhibition. ; PDB: 3OH8_A.
Probab=24.89 E-value=37 Score=19.83 Aligned_cols=15 Identities=20% Similarity=0.784 Sum_probs=9.1
Q ss_pred hhhcCccchHhHHHH
Q 047174 45 IILKFPKIDDSLRNC 59 (80)
Q Consensus 45 IiMkFPkide~lr~~ 59 (80)
..-+||.++++|+++
T Consensus 33 F~F~~p~l~~AL~~l 47 (48)
T PF08338_consen 33 FQFRYPTLEEALRDL 47 (48)
T ss_dssp ---S-SSHHHHHHH-
T ss_pred CcccCCCHHHHHhcc
Confidence 456899999999875
No 73
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=24.48 E-value=59 Score=24.55 Aligned_cols=20 Identities=10% Similarity=-0.105 Sum_probs=17.7
Q ss_pred HHHHHHHHhhcCCCCCceee
Q 047174 57 RNCKAIFEKFGGLQNPLGVV 76 (80)
Q Consensus 57 r~~R~vFeqfDeDsnGti~~ 76 (80)
+.|+.-|.-||++..|+|+-
T Consensus 101 ~~I~~AF~~FD~~~~G~I~~ 120 (171)
T KOG0031|consen 101 EVILNAFKTFDDEGSGKIDE 120 (171)
T ss_pred HHHHHHHHhcCccCCCccCH
Confidence 57899999999999999974
No 74
>PF09912 DUF2141: Uncharacterized protein conserved in bacteria (DUF2141); InterPro: IPR018673 This family of conserved hypothetical proteins has no known function.
Probab=24.02 E-value=31 Score=22.89 Aligned_cols=11 Identities=9% Similarity=-0.360 Sum_probs=9.2
Q ss_pred hcCCCCCceee
Q 047174 66 FGGLQNPLGVV 76 (80)
Q Consensus 66 fDeDsnGti~~ 76 (80)
+|+|.||..|.
T Consensus 61 hD~N~NgklD~ 71 (112)
T PF09912_consen 61 HDENGNGKLDT 71 (112)
T ss_pred EeCCCCCcCCc
Confidence 49999998874
No 75
>PF11043 DUF2856: Protein of unknown function (DUF2856); InterPro: IPR020500 This phage protein modulates the activity of the host recBCD nuclease and thus protects the linear double stranded DNA from exonuclease degradation [].
Probab=23.78 E-value=55 Score=22.62 Aligned_cols=48 Identities=33% Similarity=0.548 Sum_probs=31.9
Q ss_pred CchhHHHHHHHHHH-----HHHhhcC-Ccccchh-hhhhcCccchHhHHHHHHHH
Q 047174 16 MPETKLEAKMVEAM-----QRRAAEG-TALKSFN-SIILKFPKIDDSLRNCKAIF 63 (80)
Q Consensus 16 ~~e~kLe~KmvEam-----~~Ra~~g-~s~KSfn-SIiMkFPkide~lr~~R~vF 63 (80)
.+|+|-|+..-.-+ |++...- ++++-|- ..+-+||.||-.|||-|.-|
T Consensus 37 ~~ETKaEr~~R~~I~LA~k~Ek~r~~~tsirp~rkat~~~f~eidprlrnyrsry 91 (97)
T PF11043_consen 37 PPETKAERMYRRDIQLAEKQEKERINQTSIRPFRKATYTKFPEIDPRLRNYRSRY 91 (97)
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHhhhhcccccChHHHHHHHhh
Confidence 45677776543221 3333333 7777774 57789999999999999754
No 76
>PF14424 Toxin-deaminase: The BURPS668_1122 family of deaminases
Probab=22.73 E-value=1.2e+02 Score=21.06 Aligned_cols=47 Identities=15% Similarity=0.280 Sum_probs=30.4
Q ss_pred hHHHHHHHHHHHHHhhcCCccc--chhhhhhcCccchHhHHHHHHHHHhhcCCC
Q 047174 19 TKLEAKMVEAMQRRAAEGTALK--SFNSIILKFPKIDDSLRNCKAIFEKFGGLQ 70 (80)
Q Consensus 19 ~kLe~KmvEam~~Ra~~g~s~K--SfnSIiMkFPkide~lr~~R~vFeqfDeDs 70 (80)
.+=|.||+|.+.+........+ +++=++..=| -.-|..|++||=++=
T Consensus 74 ~DsE~KiL~~ia~~l~~~~~~~~G~i~l~te~~p-----C~SC~~vi~qF~~~~ 122 (133)
T PF14424_consen 74 NDSEYKILEDIAKKLGDNPDPSGGTIDLFTELPP-----CESCSNVIEQFKKDF 122 (133)
T ss_pred ccHHHHHHHHHHHHhccccccCCceEEEEecCCc-----ChhHHHHHHHHHHHC
Confidence 4558888888887775554433 5555555444 356888888886554
No 77
>PF15386 Tantalus: Drosophila Tantalus-like
Probab=22.72 E-value=32 Score=21.78 Aligned_cols=22 Identities=27% Similarity=0.270 Sum_probs=18.6
Q ss_pred HHHHHHHHhhcCCCCCceeeee
Q 047174 57 RNCKAIFEKFGGLQNPLGVVIA 78 (80)
Q Consensus 57 r~~R~vFeqfDeDsnGti~~~~ 78 (80)
+++-.|||.=+.++||++..+.
T Consensus 36 ~~LETIfEEp~~~s~~~~~~~~ 57 (61)
T PF15386_consen 36 KNLETIFEEPKNESNGCLVYMS 57 (61)
T ss_pred CCcchhhccccccCCcceEEee
Confidence 4677899999999999998874
No 78
>PF08706 D5_N: D5 N terminal like; InterPro: IPR014818 This domain is found in D5 proteins of DNA viruses and bacteriophage P4 DNA primase.
Probab=21.58 E-value=71 Score=20.11 Aligned_cols=27 Identities=19% Similarity=0.231 Sum_probs=17.0
Q ss_pred cchHhHHHHHHH-----HHhhcCC------CCCceeee
Q 047174 51 KIDDSLRNCKAI-----FEKFGGL------QNPLGVVI 77 (80)
Q Consensus 51 kide~lr~~R~v-----FeqfDeD------snGti~~~ 77 (80)
++++-++.++.. .+.+|.| .||++|+-
T Consensus 74 ~~~~i~~~~~~~~~~~~~~~~d~~~~~i~~~NGvldl~ 111 (150)
T PF08706_consen 74 KIKEILKQLKSMPIAVPSDELDADPNLINFKNGVLDLR 111 (150)
T ss_pred HHHHHHHHHHHhhhccChhhcCCCcCEEecCCEEEECC
Confidence 445556666544 5677877 67877753
No 79
>cd01612 APG12_C Ubiquitin-like domain of APG12. APG12_C The carboxy-terminal ubiquitin-like domain of APG12. Autophagy is a process in which cytoplasmic components are delivered to the lysosome/vacuole for degradation. Autophagy requires a ubiquitin-like protein conjugation system, in which APG12 is covalently bound to APG5.
Probab=21.19 E-value=74 Score=20.59 Aligned_cols=58 Identities=16% Similarity=0.213 Sum_probs=33.3
Q ss_pred CccccCchhHHHHHHHHHHHHHhhcC---CcccchhhhhhcCccchHhHHHHHHHHHhhcCCCCCcee
Q 047174 11 TTSAWMPETKLEAKMVEAMQRRAAEG---TALKSFNSIILKFPKIDDSLRNCKAIFEKFGGLQNPLGV 75 (80)
Q Consensus 11 ~~k~~~~e~kLe~KmvEam~~Ra~~g---~s~KSfnSIiMkFPkide~lr~~R~vFeqfDeDsnGti~ 75 (80)
++|+..+.+.-=...+..+|+|-.-. +-+==+|..+ -|.-|+ .+.++|++||+ ||-..
T Consensus 17 k~kflv~~~~tv~~~~~~lrk~L~l~~~~slflyvnn~f--~p~~d~---~~g~LY~~~~~--dGfLy 77 (87)
T cd01612 17 QKVFKISATQSFQAVIDFLRKRLKLKASDSLFLYINNSF--APSPDE---NVGNLYRCFGT--NGELI 77 (87)
T ss_pred ccEEEeCCCCCHHHHHHHHHHHhCCCccCeEEEEECCcc--CCCchh---HHHHHHHhcCC--CCEEE
Confidence 34555555555556677788887532 2222234422 366665 56778999965 56443
No 80
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=20.91 E-value=1.1e+02 Score=25.89 Aligned_cols=29 Identities=21% Similarity=0.232 Sum_probs=25.3
Q ss_pred CCCCccccCchhHHHHHHHHHHHHHhhcCCc
Q 047174 8 PESTTSAWMPETKLEAKMVEAMQRRAAEGTA 38 (80)
Q Consensus 8 ~~s~~k~~~~e~kLe~KmvEam~~Ra~~g~s 38 (80)
||+|.. -+|+-...++|++|++.|..|++
T Consensus 194 lDEPTS--GLDS~sA~~vv~~Lk~lA~~grt 222 (613)
T KOG0061|consen 194 LDEPTS--GLDSFSALQVVQLLKRLARSGRT 222 (613)
T ss_pred ecCCCC--CcchhhHHHHHHHHHHHHhCCCE
Confidence 688855 59999999999999999998954
No 81
>PF08181 DegQ: DegQ (SacQ) family; InterPro: IPR012554 This family consists of the DegQ (formerly sacQ) regulatory peptides. The DegQ family of peptides control the rates of synthesis of a class of both secreted and intracellular degradative enzymes in Bacillus subtilis. DegQ is 46 amino acids long and activates the synthesis of degradative enzymes. The expression of this peptide was shown to be subjected both to catabolite repression and DegS-DegU-mediated control. Thus allowing an increase in the rate of synthesis of degQ under conditions of nitrogen starvation [].
Probab=20.76 E-value=81 Score=19.28 Aligned_cols=16 Identities=31% Similarity=0.547 Sum_probs=13.2
Q ss_pred hHhHHHHHHHHHhhcC
Q 047174 53 DDSLRNCKAIFEKFGG 68 (80)
Q Consensus 53 de~lr~~R~vFeqfDe 68 (80)
.+||+||-.-.+|||+
T Consensus 24 t~sl~ninksidq~dk 39 (46)
T PF08181_consen 24 TDSLRNINKSIDQYDK 39 (46)
T ss_pred HHHHHHHHHhHHHHhc
Confidence 4688888888899986
No 82
>PF02171 Piwi: Piwi domain; InterPro: IPR003165 This domain is found in the stem cell self-renewal protein Piwi and its relatives in Drosophila melanogaster []. It has been found in the C-terminal of a number of proteins which also contain the PAZ domain (IPR003100 from INTERPRO) in their central region, for example the Argonaute proteins. Several of these proteins have been implicated in the development and maintenance of stem cells through the RNA-mediated gene-quelling mechanisms associated with the protein DICER. ; GO: 0005515 protein binding; PDB: 4F1N_B 3LUH_B 4EI1_A 3QX8_A 3LUC_C 3LUJ_B 3LUD_B 3QX9_A 3LUG_B 3LUK_B ....
Probab=20.40 E-value=2.5e+02 Score=20.36 Aligned_cols=59 Identities=22% Similarity=0.280 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHhhcCCcccchhhhhh-c-------CccchH-hHHHHHHHHHhhcCCCCCceeeeee
Q 047174 20 KLEAKMVEAMQRRAAEGTALKSFNSIIL-K-------FPKIDD-SLRNCKAIFEKFGGLQNPLGVVIAL 79 (80)
Q Consensus 20 kLe~KmvEam~~Ra~~g~s~KSfnSIiM-k-------FPkide-~lr~~R~vFeqfDeDsnGti~~~~~ 79 (80)
.|+.-+.+++++-...... .--..||. + |+++.+ .++.++..|+++.++-+-.+.+|.+
T Consensus 127 ~l~~~~~~~L~~~~~~~~~-~~P~~IiiyRdGvse~~~~~v~~~Ei~~i~~a~~~~~~~~~p~~~~i~v 194 (302)
T PF02171_consen 127 NLEEIIKEALKEFKKNNGK-WLPERIIIYRDGVSEGQFKKVLEEEIEAIKEAIKELGEDYNPKITYIVV 194 (302)
T ss_dssp HHHHHHHHHHHHHHHTTTT--TTSEEEEEEES--GGGHHHHHHHHHHHHHHHHHHHTHTTCTEEEEEEE
T ss_pred chhhHHHHHHHHHHHHcCC-CCCceEEEEEcccCHHhhcccHHHHHHHHHHHHhhcccCCCCcEEEEEe
Confidence 4888889998875543322 12335554 2 566766 8999999999999888877777654
Done!