BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047176
(222 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3TR7|A Chain A, Structure Of A Uracil-Dna Glycosylase (Ung) From Coxiella
Burnetii
Length = 232
Score = 127 bits (318), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 61/104 (58%), Positives = 77/104 (74%), Gaps = 1/104 (0%)
Query: 119 ELQKPYAKRLCEFVEKEIKDSGVDIFPPQHLIFNALNTTPFDRVKAVIIGQDPYHGPGQA 178
E Q+PY + + +FV+KE + +G I+PPQ IFNAL TP++ +K VI+GQDPYHGP QA
Sbjct: 20 EKQEPYFQEILDFVKKE-RKAGKIIYPPQKDIFNALKLTPYEAIKVVILGQDPYHGPNQA 78
Query: 179 MGLSFSVPEGVKIPSSLANIFKEIHQDVGCRLPSHGNLEKWAVQ 222
GL+FSV GV P SL NIFKE+H D+G +PSHG LEKWA Q
Sbjct: 79 HGLAFSVRPGVPAPPSLQNIFKELHADLGVSIPSHGFLEKWAKQ 122
>pdb|3UFM|A Chain A, Co-Crystal Structure Of Deinococcus Radiodurans Uracil-Dna
Glycosylase And The C-Terminus Of The Single-Stranded
Dna-Binding Protein
Length = 255
Score = 105 bits (263), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 53/105 (50%), Positives = 67/105 (63%), Gaps = 3/105 (2%)
Query: 119 ELQKPYAKRLCEFVEKEIKDSGVDIFPPQHLIFNALNTTPFDRVKAVIIGQDPYHGPGQA 178
E PY L +F+ +E K+ I+PP +FNAL TP VK +I+GQDPYHGP QA
Sbjct: 34 EFSAPYFHELTDFLRQERKE--YTIYPPAPDVFNALRYTPLGEVKVLILGQDPYHGPNQA 91
Query: 179 MGLSFSVPEGVKIPSSLANIFKEIHQDV-GCRLPSHGNLEKWAVQ 222
GLSFSV GV++P SL NI+KE+ +D+ G P HG L WA Q
Sbjct: 92 HGLSFSVRPGVRVPPSLRNIYKELTEDIPGFVAPKHGYLRSWAEQ 136
>pdb|2BOO|A Chain A, The Crystal Structure Of Uracil-Dna N-Glycosylase (Ung)
From Deinococcus Radiodurans
Length = 247
Score = 105 bits (263), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 53/105 (50%), Positives = 67/105 (63%), Gaps = 3/105 (2%)
Query: 119 ELQKPYAKRLCEFVEKEIKDSGVDIFPPQHLIFNALNTTPFDRVKAVIIGQDPYHGPGQA 178
E PY L +F+ +E K+ I+PP +FNAL TP VK +I+GQDPYHGP QA
Sbjct: 34 EFSAPYFHELTDFLRQERKE--YTIYPPAPDVFNALRYTPLGEVKVLILGQDPYHGPNQA 91
Query: 179 MGLSFSVPEGVKIPSSLANIFKEIHQDV-GCRLPSHGNLEKWAVQ 222
GLSFSV GV++P SL NI+KE+ +D+ G P HG L WA Q
Sbjct: 92 HGLSFSVRPGVRVPPSLRNIYKELTEDIPGFVAPKHGYLRSWAEQ 136
>pdb|2JHQ|A Chain A, Crystal Structure Of Uracil Dna-Glycosylase From Vibrio
Cholerae
Length = 226
Score = 105 bits (262), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 54/105 (51%), Positives = 70/105 (66%), Gaps = 2/105 (1%)
Query: 119 ELQKPYAKRLCEFVEKEIKDSGVDIFPPQHLIFNALNTTPFDRVKAVIIGQDPYHGPGQA 178
E Q+ Y ++ +FVE + + +G I+PP +FNA T F VK VI+GQDPYHGP QA
Sbjct: 14 EKQQAYFQQTLQFVESQ-RQAGKVIYPPAKDVFNAFRFTEFGDVKVVILGQDPYHGPNQA 72
Query: 179 MGLSFSVPEGVKIPSSLANIFKEIHQDV-GCRLPSHGNLEKWAVQ 222
GL FSV GVK P SL NI+KE+ QD+ G ++P HG L+ WA Q
Sbjct: 73 HGLCFSVLPGVKTPPSLVNIYKELAQDIPGFQIPPHGYLQSWAQQ 117
>pdb|2UUG|A Chain A, Escherichia Coli Uracil-Dna Glycosylase:inhibitor Complex
With H187d Mutant Udg And Wild-Type Ugi
pdb|2UUG|B Chain B, Escherichia Coli Uracil-Dna Glycosylase:inhibitor Complex
With H187d Mutant Udg And Wild-Type Ugi
Length = 229
Score = 104 bits (260), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 54/105 (51%), Positives = 67/105 (63%), Gaps = 2/105 (1%)
Query: 119 ELQKPYAKRLCEFVEKEIKDSGVDIFPPQHLIFNALNTTPFDRVKAVIIGQDPYHGPGQA 178
E Q+PY + V E + SGV I+PPQ +FNA T VK VI+GQDPYHGPGQA
Sbjct: 14 EKQQPYFLNTLQTVASE-RQSGVTIYPPQKDVFNAFRFTELGDVKVVILGQDPYHGPGQA 72
Query: 179 MGLSFSVPEGVKIPSSLANIFKEIHQDV-GCRLPSHGNLEKWAVQ 222
GL+FSV G+ IP SL N++KE+ + G P+HG LE WA Q
Sbjct: 73 HGLAFSVRPGIAIPPSLLNMYKELENTIPGFTRPNHGYLESWARQ 117
>pdb|1UUG|A Chain A, Escherichia Coli Uracil-Dna Glycosylase:inhibitor Complex
With Wild-Type Udg And Wild-Type Ugi
pdb|1UUG|C Chain C, Escherichia Coli Uracil-Dna Glycosylase:inhibitor Complex
With Wild-Type Udg And Wild-Type Ugi
pdb|1LQG|A Chain A, Escherichia Coli Uracil-Dna Glycosylase Complex With
Uracil- Dna Glycosylase Inhibitor Protein
pdb|1LQG|B Chain B, Escherichia Coli Uracil-Dna Glycosylase Complex With
Uracil- Dna Glycosylase Inhibitor Protein
pdb|1LQJ|A Chain A, Escherichia Coli Uracil-Dna Glycosylase
pdb|1LQJ|B Chain B, Escherichia Coli Uracil-Dna Glycosylase
pdb|1LQJ|C Chain C, Escherichia Coli Uracil-Dna Glycosylase
pdb|1LQJ|D Chain D, Escherichia Coli Uracil-Dna Glycosylase
pdb|1LQM|A Chain A, Escherichia Coli Uracil-Dna Glycosylase Complex With
Uracil- Dna Glycosylase Inhibitor Protein
pdb|1LQM|C Chain C, Escherichia Coli Uracil-Dna Glycosylase Complex With
Uracil- Dna Glycosylase Inhibitor Protein
pdb|1LQM|E Chain E, Escherichia Coli Uracil-Dna Glycosylase Complex With
Uracil- Dna Glycosylase Inhibitor Protein
pdb|1LQM|G Chain G, Escherichia Coli Uracil-Dna Glycosylase Complex With
Uracil- Dna Glycosylase Inhibitor Protein
Length = 229
Score = 104 bits (260), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 54/105 (51%), Positives = 67/105 (63%), Gaps = 2/105 (1%)
Query: 119 ELQKPYAKRLCEFVEKEIKDSGVDIFPPQHLIFNALNTTPFDRVKAVIIGQDPYHGPGQA 178
E Q+PY + V E + SGV I+PPQ +FNA T VK VI+GQDPYHGPGQA
Sbjct: 14 EKQQPYFLNTLQTVASE-RQSGVTIYPPQKDVFNAFRFTELGDVKVVILGQDPYHGPGQA 72
Query: 179 MGLSFSVPEGVKIPSSLANIFKEIHQDV-GCRLPSHGNLEKWAVQ 222
GL+FSV G+ IP SL N++KE+ + G P+HG LE WA Q
Sbjct: 73 HGLAFSVRPGIAIPPSLLNMYKELENTIPGFTRPNHGYLESWARQ 117
>pdb|1EUI|A Chain A, Escherichia Coli Uracil-Dna Glycosylase Complex With
Uracil- Dna Glycosylase Inhibitor Protein
pdb|1EUI|B Chain B, Escherichia Coli Uracil-Dna Glycosylase Complex With
Uracil- Dna Glycosylase Inhibitor Protein
Length = 228
Score = 104 bits (260), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 54/105 (51%), Positives = 67/105 (63%), Gaps = 2/105 (1%)
Query: 119 ELQKPYAKRLCEFVEKEIKDSGVDIFPPQHLIFNALNTTPFDRVKAVIIGQDPYHGPGQA 178
E Q+PY + V E + SGV I+PPQ +FNA T VK VI+GQDPYHGPGQA
Sbjct: 13 EKQQPYFLNTLQTVASE-RQSGVTIYPPQKDVFNAFRFTELGDVKVVILGQDPYHGPGQA 71
Query: 179 MGLSFSVPEGVKIPSSLANIFKEIHQDV-GCRLPSHGNLEKWAVQ 222
GL+FSV G+ IP SL N++KE+ + G P+HG LE WA Q
Sbjct: 72 HGLAFSVRPGIAIPPSLLNMYKELENTIPGFTRPNHGYLESWARQ 116
>pdb|3UF7|A Chain A, Co-Crystal Structure Of Escherichia Coli Uracil-Dna
Glycosylase And A C-Terminal Fragement Of The
Single-Stranded Dna-Binding Protein
Length = 237
Score = 104 bits (260), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 54/105 (51%), Positives = 67/105 (63%), Gaps = 2/105 (1%)
Query: 119 ELQKPYAKRLCEFVEKEIKDSGVDIFPPQHLIFNALNTTPFDRVKAVIIGQDPYHGPGQA 178
E Q+PY + V E + SGV I+PPQ +FNA T VK VI+GQDPYHGPGQA
Sbjct: 14 EKQQPYFLNTLQTVASE-RQSGVTIYPPQKDVFNAFRFTELGDVKVVILGQDPYHGPGQA 72
Query: 179 MGLSFSVPEGVKIPSSLANIFKEIHQDV-GCRLPSHGNLEKWAVQ 222
GL+FSV G+ IP SL N++KE+ + G P+HG LE WA Q
Sbjct: 73 HGLAFSVRPGIAIPPSLLNMYKELENTIPGFTRPNHGYLESWARQ 117
>pdb|4EUG|A Chain A, Crystallographic And Enzymatic Studies Of An Active Site
Variant H187q Of Escherichia Coli Uracil Dna
Glycosylase: Crystal Structures Of Mutant H187q And Its
Uracil Complex
pdb|5EUG|A Chain A, Crystallographic And Enzymatic Studies Of An Active Site
Variant H187q Of Escherichia Coli Uracil Dna
Glycosylase: Crystal Structures Of Mutant H187q And Its
Uracil Complex
Length = 229
Score = 104 bits (260), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 54/105 (51%), Positives = 67/105 (63%), Gaps = 2/105 (1%)
Query: 119 ELQKPYAKRLCEFVEKEIKDSGVDIFPPQHLIFNALNTTPFDRVKAVIIGQDPYHGPGQA 178
E Q+PY + V E + SGV I+PPQ +FNA T VK VI+GQDPYHGPGQA
Sbjct: 14 EKQQPYFLNTLQTVASE-RQSGVTIYPPQKDVFNAFRFTELGDVKVVILGQDPYHGPGQA 72
Query: 179 MGLSFSVPEGVKIPSSLANIFKEIHQDV-GCRLPSHGNLEKWAVQ 222
GL+FSV G+ IP SL N++KE+ + G P+HG LE WA Q
Sbjct: 73 HGLAFSVRPGIAIPPSLLNMYKELENTIPGFTRPNHGYLESWARQ 117
>pdb|1EUG|A Chain A, Crystal Structure Of Escherichia Coli Uracil Dna
Glycosylase And Its Complexes With Uracil And Glycerol:
Structure And Glycosylase Mechanism Revisited
Length = 229
Score = 104 bits (260), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 54/105 (51%), Positives = 67/105 (63%), Gaps = 2/105 (1%)
Query: 119 ELQKPYAKRLCEFVEKEIKDSGVDIFPPQHLIFNALNTTPFDRVKAVIIGQDPYHGPGQA 178
E Q+PY + V E + SGV I+PPQ +FNA T VK VI+GQDPYHGPGQA
Sbjct: 14 EKQQPYFLNTLQTVASE-RQSGVTIYPPQKDVFNAFRFTELGDVKVVILGQDPYHGPGQA 72
Query: 179 MGLSFSVPEGVKIPSSLANIFKEIHQDV-GCRLPSHGNLEKWAVQ 222
GL+FSV G+ IP SL N++KE+ + G P+HG LE WA Q
Sbjct: 73 HGLAFSVRPGIAIPPSLLNMYKELENTIPGFTRPNHGYLESWARQ 117
>pdb|2EUG|A Chain A, Crystal Structure Of Escherichia Coli Uracil Dna
Glycosylase And Its Complexes With Uracil And Glycerol:
Structure And Glycosylase Mechanism Revisited
pdb|3EUG|A Chain A, Crystal Structure Of Escherichia Coli Uracil Dna
Glycosylase And Its Complexes With Uracil And Glycerol:
Structure And Glycosylase Mechanism Revisited
Length = 229
Score = 102 bits (254), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 53/105 (50%), Positives = 67/105 (63%), Gaps = 2/105 (1%)
Query: 119 ELQKPYAKRLCEFVEKEIKDSGVDIFPPQHLIFNALNTTPFDRVKAVIIGQDPYHGPGQA 178
E Q+P+ + V E + SGV I+PPQ +FNA T VK VI+GQDPYHGPGQA
Sbjct: 14 EKQQPHFLNTLQTVASE-RQSGVTIYPPQKDVFNAFRFTELGDVKVVILGQDPYHGPGQA 72
Query: 179 MGLSFSVPEGVKIPSSLANIFKEIHQDV-GCRLPSHGNLEKWAVQ 222
GL+FSV G+ IP SL N++KE+ + G P+HG LE WA Q
Sbjct: 73 HGLAFSVRPGIAIPPSLLNMYKELENTIPGFTRPNHGYLESWARQ 117
>pdb|1FLZ|A Chain A, Uracil Dna Glycosylase With Uaap
Length = 228
Score = 102 bits (254), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 53/105 (50%), Positives = 67/105 (63%), Gaps = 2/105 (1%)
Query: 119 ELQKPYAKRLCEFVEKEIKDSGVDIFPPQHLIFNALNTTPFDRVKAVIIGQDPYHGPGQA 178
E Q+P+ + V E + SGV I+PPQ +FNA T VK VI+GQDPYHGPGQA
Sbjct: 13 EKQQPHFLNTLQTVASE-RQSGVTIYPPQKDVFNAFRFTELGDVKVVILGQDPYHGPGQA 71
Query: 179 MGLSFSVPEGVKIPSSLANIFKEIHQDV-GCRLPSHGNLEKWAVQ 222
GL+FSV G+ IP SL N++KE+ + G P+HG LE WA Q
Sbjct: 72 HGLAFSVRPGIAIPPSLLNMYKELENTIPGFTRPNHGYLESWARQ 116
>pdb|3TKB|A Chain A, Crystal Structure Of Human Uracil-Dna Glycosylase
D183gK302R MUTANT
Length = 223
Score = 90.9 bits (224), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 50/106 (47%), Positives = 60/106 (56%), Gaps = 3/106 (2%)
Query: 118 GELQKPYAKRLCEFVEKEIKDSGVDIFPPQHLIFNALNTTPFDRVKAVIIGQDPYHGPGQ 177
GE KPY +L FV +E K ++PP H +F VK VI+GQDPYHGP Q
Sbjct: 14 GEFGKPYFIKLMGFVAEERKH--YTVYPPPHQVFTWTQMCDIKDVKVVILGQDPYHGPNQ 71
Query: 178 AMGLSFSVPEGVKIPSSLANIFKEIHQDV-GCRLPSHGNLEKWAVQ 222
A GL FSV V P SL NI+KE+ D+ G P HG+L WA Q
Sbjct: 72 AHGLCFSVQRPVPPPPSLENIYKELSTDIEGFVHPGHGDLSGWAKQ 117
>pdb|1YUO|A Chain A, Optimisation Of The Surface Electrostatics As A Strategy
For Cold Adaptation Of Uracil-Dna N-Glycosylase
(Ung)from Atlantic Cod (Gadus Morhua)
Length = 223
Score = 89.0 bits (219), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 49/106 (46%), Positives = 60/106 (56%), Gaps = 3/106 (2%)
Query: 118 GELQKPYAKRLCEFVEKEIKDSGVDIFPPQHLIFNALNTTPFDRVKAVIIGQDPYHGPGQ 177
GE KPY +L FV +E K ++PP H +F VK VI+GQDPYHGP Q
Sbjct: 14 GEFGKPYFIKLMGFVAEERKH--YTVYPPPHQVFTWTQMCDIKDVKVVILGQDPYHGPNQ 71
Query: 178 AMGLSFSVPEGVKIPSSLANIFKEIHQDVGCRL-PSHGNLEKWAVQ 222
A GL FSV V P SL NI+KE+ D+ + P HG+L WA Q
Sbjct: 72 AHGLCFSVQRPVPPPPSLVNIYKELSTDIEDFVHPGHGDLSGWAKQ 117
>pdb|2SSP|E Chain E, Leucine-272-Alanine Uracil-Dna Glycosylase Bound To Abasic
Site-Containing Dna
Length = 223
Score = 88.6 bits (218), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 49/106 (46%), Positives = 60/106 (56%), Gaps = 3/106 (2%)
Query: 118 GELQKPYAKRLCEFVEKEIKDSGVDIFPPQHLIFNALNTTPFDRVKAVIIGQDPYHGPGQ 177
GE KPY +L FV +E K ++PP H +F VK VI+GQDPYHGP Q
Sbjct: 14 GEFGKPYFIKLMGFVAEERKH--YTVYPPPHQVFTWTQMCDIKDVKVVILGQDPYHGPNQ 71
Query: 178 AMGLSFSVPEGVKIPSSLANIFKEIHQDVGCRL-PSHGNLEKWAVQ 222
A GL FSV V P SL NI+KE+ D+ + P HG+L WA Q
Sbjct: 72 AHGLCFSVQRPVPPPPSLENIYKELSTDIEDFVHPGHGDLSGWAKQ 117
>pdb|1OKB|A Chain A, Crystal Structure Of Uracil-Dna Glycosylase From Atlantic
Cod (Gadus Morhua)
pdb|1OKB|B Chain B, Crystal Structure Of Uracil-Dna Glycosylase From Atlantic
Cod (Gadus Morhua)
Length = 223
Score = 88.6 bits (218), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 48/106 (45%), Positives = 62/106 (58%), Gaps = 3/106 (2%)
Query: 118 GELQKPYAKRLCEFVEKEIKDSGVDIFPPQHLIFNALNTTPFDRVKAVIIGQDPYHGPGQ 177
E +KPY K+L FV E S ++PP +++ VK VI+GQDPYHGP Q
Sbjct: 14 AEFEKPYFKQLMSFVADE--RSRHTVYPPADQVYSWTEMCDIQDVKVVILGQDPYHGPNQ 71
Query: 178 AMGLSFSVPEGVKIPSSLANIFKEIHQDV-GCRLPSHGNLEKWAVQ 222
A GL FSV + V P SL NI+KE+ D+ G + P HG+L WA Q
Sbjct: 72 AHGLCFSVQKPVPPPPSLVNIYKELCTDIDGFKHPGHGDLSGWAKQ 117
>pdb|1UGH|E Chain E, Crystal Structure Of Human Uracil-Dna Glycosylase In
Complex With A Protein Inhibitor: Protein Mimicry Of Dna
pdb|1SSP|E Chain E, Wild-Type Uracil-Dna Glycosylase Bound To
Uracil-Containing Dna
pdb|1EMH|A Chain A, Crystal Structure Of Human Uracil-Dna Glycosylase Bound To
Uncleaved Substrate-Containing Dna
pdb|1EMJ|A Chain A, Uracil-Dna Glycosylase Bound To Dna Containing A 4'-Thio-
2'deoxyuridine Analog Product
pdb|1Q3F|A Chain A, Uracil Dna Glycosylase Bound To A Cationic 1-Aza-2'-
Deoxyribose-Contianing Dna
pdb|2HXM|A Chain A, Complex Of Ung2 And A Small Molecule Synthetic Inhibitor
pdb|1AKZ|A Chain A, Human Uracil-Dna Glycosylase
pdb|2OXM|A Chain A, Crystal Structure Of A Ung2MODIFIED DNA COMPLEX THAT
Represent A Stabilized Short-Lived Extrahelical State In
Ezymatic Dna Base Flipping
pdb|2OYT|A Chain A, Crystal Structure Of Ung2DNA(TM)
pdb|3FCF|A Chain A, Complex Of Ung2 And A Fragment-Based Designed Inhibitor
pdb|3FCI|A Chain A, Complex Of Ung2 And A Fragment-Based Designed Inhibitor
pdb|3FCK|B Chain B, Complex Of Ung2 And A Fragment-Based Design Inhibitor
pdb|3FCL|A Chain A, Complex Of Ung2 And A Fragment-Based Designed Inhibitor
pdb|3FCL|B Chain B, Complex Of Ung2 And A Fragment-Based Designed Inhibitor
Length = 223
Score = 88.6 bits (218), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 49/106 (46%), Positives = 60/106 (56%), Gaps = 3/106 (2%)
Query: 118 GELQKPYAKRLCEFVEKEIKDSGVDIFPPQHLIFNALNTTPFDRVKAVIIGQDPYHGPGQ 177
GE KPY +L FV +E K ++PP H +F VK VI+GQDPYHGP Q
Sbjct: 14 GEFGKPYFIKLMGFVAEERKH--YTVYPPPHQVFTWTQMCDIKDVKVVILGQDPYHGPNQ 71
Query: 178 AMGLSFSVPEGVKIPSSLANIFKEIHQDVGCRL-PSHGNLEKWAVQ 222
A GL FSV V P SL NI+KE+ D+ + P HG+L WA Q
Sbjct: 72 AHGLCFSVQRPVPPPPSLENIYKELSTDIEDFVHPGHGDLSGWAKQ 117
>pdb|3CXM|A Chain A, Leishmania Naiffi Uracil-Dna Glycosylase In Complex With
5-Bromouracil
Length = 268
Score = 87.0 bits (214), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 46/97 (47%), Positives = 62/97 (63%), Gaps = 2/97 (2%)
Query: 127 RLCEFVEKEIKDSGVDIFPPQHLIFNALNTTPFDRVKAVIIGQDPYHGPGQAMGLSFSVP 186
R+ F+++E K+ G I PP IFNA N+ PF +K V++GQDPYH QA GL FSV
Sbjct: 59 RIERFLDEE-KEKGRVILPPAADIFNAFNSCPFRGLKVVLLGQDPYHDLHQAHGLCFSVL 117
Query: 187 EGVKIPSSLANIFKEIHQDV-GCRLPSHGNLEKWAVQ 222
V +P SL NI+KE+ D+ G + P HG L+ W+ Q
Sbjct: 118 PEVPLPPSLRNIYKELTTDIAGFQAPKHGYLQSWSEQ 154
>pdb|4SKN|E Chain E, A Nucleotide-flipping Mechanism From The Structure Of
Human Uracil-dna Glycosylase Bound To Dna
Length = 223
Score = 86.7 bits (213), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 48/106 (45%), Positives = 60/106 (56%), Gaps = 3/106 (2%)
Query: 118 GELQKPYAKRLCEFVEKEIKDSGVDIFPPQHLIFNALNTTPFDRVKAVIIGQDPYHGPGQ 177
GE KPY +L FV +E K ++PP H +F VK VI+GQ+PYHGP Q
Sbjct: 14 GEFGKPYFIKLMGFVAEERKH--YTVYPPPHQVFTWTQMCDIKDVKVVILGQNPYHGPNQ 71
Query: 178 AMGLSFSVPEGVKIPSSLANIFKEIHQDVGCRL-PSHGNLEKWAVQ 222
A GL FSV V P SL NI+KE+ D+ + P HG+L WA Q
Sbjct: 72 AHGLCFSVQRPVPPPPSLENIYKELSTDIEDFVHPGHGDLSGWAKQ 117
>pdb|2ZHX|A Chain A, Crystal Structure Of Uracil-Dna Glycosylase From
Mycobacterium Tuberculosis In Complex With A
Proteinaceous Inhibitor
pdb|2ZHX|C Chain C, Crystal Structure Of Uracil-Dna Glycosylase From
Mycobacterium Tuberculosis In Complex With A
Proteinaceous Inhibitor
pdb|2ZHX|E Chain E, Crystal Structure Of Uracil-Dna Glycosylase From
Mycobacterium Tuberculosis In Complex With A
Proteinaceous Inhibitor
pdb|2ZHX|G Chain G, Crystal Structure Of Uracil-Dna Glycosylase From
Mycobacterium Tuberculosis In Complex With A
Proteinaceous Inhibitor
pdb|2ZHX|I Chain I, Crystal Structure Of Uracil-Dna Glycosylase From
Mycobacterium Tuberculosis In Complex With A
Proteinaceous Inhibitor
pdb|2ZHX|K Chain K, Crystal Structure Of Uracil-Dna Glycosylase From
Mycobacterium Tuberculosis In Complex With A
Proteinaceous Inhibitor
pdb|2ZHX|M Chain M, Crystal Structure Of Uracil-Dna Glycosylase From
Mycobacterium Tuberculosis In Complex With A
Proteinaceous Inhibitor
pdb|3A7N|A Chain A, Crystal Structure Of Uracil-Dna Glycosylase From
Mycobacterium Tuberculosis
Length = 238
Score = 79.3 bits (194), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 44/94 (46%), Positives = 57/94 (60%), Gaps = 3/94 (3%)
Query: 128 LCEFVEKEIKDSGVDIFPPQHLIFNALNTTPFDRVKAVIIGQDPYHGPGQAMGLSFSVPE 187
+ +F+ EI +G P + A T PFD V+ +I+GQDPY PG A+GLSFSV
Sbjct: 39 MGQFLRAEIA-AGRRYLPAGSNVLRAF-TFPFDNVRVLIVGQDPYPTPGHAVGLSFSVAP 96
Query: 188 GVK-IPSSLANIFKEIHQDVGCRLPSHGNLEKWA 220
V+ P SLANIF E D+G LPS+G+L WA
Sbjct: 97 DVRPWPRSLANIFDEYTADLGYPLPSNGDLTPWA 130
>pdb|1UDI|E Chain E, Nucleotide Mimicry In The Crystal Structure Of The Uracil-
Dna Glycosylase-Uracil Glycosylase Inhibitor Protein
Complex
pdb|1LAU|E Chain E, Uracil-Dna Glycosylase
pdb|1UDG|A Chain A, The Structural Basis Of Specific Base Excision Repair By
Uracil-Dna Glycosylase
pdb|1UDH|A Chain A, The Structural Basis Of Specific Base Excision Repair By
Uracil-Dna Glycosylase
Length = 244
Score = 70.1 bits (170), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 41/103 (39%), Positives = 52/103 (50%), Gaps = 3/103 (2%)
Query: 119 ELQKPYAKRLCEFVEKEIKDSGVDIFPPQHLIFNALNTTPFDRVKAVIIGQDPYHGPGQA 178
EL P L E + ++ PP+ +F+ D V+ VIIGQDPYH PGQA
Sbjct: 39 ELANPLTAHL--LAEYNRRCQTEEVLPPREDVFSWTRYCTPDEVRVVIIGQDPYHHPGQA 96
Query: 179 MGLSFSVPEGVKIPSSLANIFKEIHQDV-GCRLPSHGNLEKWA 220
GL+FSV V P SL N+ + R+ HG LEKWA
Sbjct: 97 HGLAFSVRANVPPPPSLRNVLAAVKNCYPEARMSGHGCLEKWA 139
>pdb|2C53|A Chain A, A Comparative Study Of Uracil Dna Glycosylases From Human
And Herpes Simplex Virus Type 1
pdb|2C56|A Chain A, A Comparative Study Of Uracil Dna Glycosylases From Human
And Herpes Simplex Virus Type 1
Length = 244
Score = 68.2 bits (165), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 40/103 (38%), Positives = 52/103 (50%), Gaps = 3/103 (2%)
Query: 119 ELQKPYAKRLCEFVEKEIKDSGVDIFPPQHLIFNALNTTPFDRVKAVIIGQDPYHGPGQA 178
EL P L E + ++ PP+ +F+ D V+ VIIGQ+PYH PGQA
Sbjct: 39 ELANPLTAHL--LAEYNRRCQTEEVLPPREDVFSWTRYCTPDEVRVVIIGQNPYHHPGQA 96
Query: 179 MGLSFSVPEGVKIPSSLANIFKEIHQDV-GCRLPSHGNLEKWA 220
GL+FSV V P SL N+ + R+ HG LEKWA
Sbjct: 97 HGLAFSVRANVPPPPSLRNVLAAVKNCYPEARMSGHGCLEKWA 139
>pdb|2J8X|A Chain A, Epstein-Barr Virus Uracil-Dna Glycosylase In Complex With
Ugi From Pbs-2
pdb|2J8X|C Chain C, Epstein-Barr Virus Uracil-Dna Glycosylase In Complex With
Ugi From Pbs-2
Length = 231
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 33/62 (53%), Positives = 42/62 (67%), Gaps = 2/62 (3%)
Query: 162 VKAVIIGQDPYHGPGQAMGLSFSVPEGVKIPSSLANIFKEIHQDV-GCRLPSHGNLEKWA 220
+K VI+GQDPYHG GQA GL+FSV G +P SL NI+ E+H+ + P HG L+ WA
Sbjct: 59 IKVVILGQDPYHG-GQANGLAFSVAYGFPVPPSLRNIYAELHRSLPEFSPPDHGCLDAWA 117
Query: 221 VQ 222
Q
Sbjct: 118 SQ 119
>pdb|4B9I|A Chain A, Structure Of Cssa Subunit Complemented With Donor Strand
From Cssb Subunit Of Enterotoxigenic Escherichia Coli
Colonization Factor Cs6
Length = 149
Score = 28.1 bits (61), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 134 KEIKDSGVDIFPPQHLIFNALNTTPFDR 161
K +KD G ++ P Q + F ALN T D+
Sbjct: 85 KMLKDHGAEVTPNQQITFRALNYTSGDK 112
>pdb|4B9J|A Chain A, Structure Of Self-Complemented Cssa Subunit Of
Enterotoxigenic Escherichia Coli Colonization Factor Cs6
Length = 150
Score = 27.7 bits (60), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 134 KEIKDSGVDIFPPQHLIFNALNTTPFDR 161
K +KD G ++ P Q + F ALN T D+
Sbjct: 85 KMLKDHGAEVTPNQQITFRALNYTSGDK 112
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,726,123
Number of Sequences: 62578
Number of extensions: 200688
Number of successful extensions: 344
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 290
Number of HSP's gapped (non-prelim): 25
length of query: 222
length of database: 14,973,337
effective HSP length: 95
effective length of query: 127
effective length of database: 9,028,427
effective search space: 1146610229
effective search space used: 1146610229
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)