Query 047176
Match_columns 222
No_of_seqs 211 out of 1122
Neff 4.6
Searched_HMMs 46136
Date Fri Mar 29 08:29:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047176.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047176hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2994 Uracil DNA glycosylase 100.0 7.6E-54 1.7E-58 380.1 9.4 158 58-222 33-191 (297)
2 COG0692 Ung Uracil DNA glycosy 100.0 5.7E-50 1.2E-54 348.2 10.2 114 108-222 3-117 (223)
3 PHA03202 uracil DNA glycosylas 100.0 1.7E-49 3.7E-54 360.9 11.0 187 1-222 22-209 (313)
4 PHA03204 uracil DNA glycosylas 100.0 6.3E-49 1.4E-53 358.0 11.8 114 107-222 101-215 (322)
5 PHA03201 uracil DNA glycosylas 100.0 2.8E-48 6E-53 353.6 11.1 114 107-222 101-215 (318)
6 PHA03199 uracil DNA glycosylas 100.0 2.8E-48 6E-53 351.4 9.9 117 105-222 84-201 (304)
7 TIGR00628 ung uracil-DNA glyco 100.0 1.2E-47 2.6E-52 333.6 10.3 112 110-222 2-114 (212)
8 PHA03347 uracil DNA glycosylas 100.0 2.1E-47 4.5E-52 338.9 9.7 118 102-222 20-139 (252)
9 PHA03200 uracil DNA glycosylas 100.0 2.8E-47 6.1E-52 338.5 10.3 114 106-222 30-145 (255)
10 PRK05254 uracil-DNA glycosylas 100.0 2.1E-46 4.6E-51 328.0 10.0 115 107-222 5-119 (224)
11 PF03167 UDG: Uracil DNA glyco 94.3 0.012 2.5E-07 45.9 -0.2 40 159-203 5-44 (152)
12 KOG0121 Nuclear cap-binding pr 75.6 2.3 5E-05 35.8 2.4 39 141-183 44-82 (153)
13 PRK07735 NADH dehydrogenase su 73.5 25 0.00054 34.5 9.1 30 191-220 373-409 (430)
14 cd04890 ACT_AK-like_1 ACT doma 37.4 39 0.00084 22.7 2.8 45 148-203 18-62 (62)
15 PTZ00390 ubiquitin-conjugating 35.1 53 0.0012 27.2 3.7 45 140-195 21-68 (152)
16 COG4868 Uncharacterized protei 28.3 15 0.00032 35.5 -0.7 90 110-204 293-393 (493)
17 cd04934 ACT_AK-Hom3_1 CT domai 24.8 97 0.0021 22.4 3.2 46 149-204 20-65 (73)
18 PHA03307 transcriptional regul 24.3 61 0.0013 36.0 2.8 88 107-206 962-1068(1352)
19 PF11502 BCL9: B-cell lymphoma 22.4 1.1E+02 0.0025 20.6 2.8 22 61-84 1-22 (40)
No 1
>KOG2994 consensus Uracil DNA glycosylase [Replication, recombination and repair]
Probab=100.00 E-value=7.6e-54 Score=380.05 Aligned_cols=158 Identities=44% Similarity=0.749 Sum_probs=142.7
Q ss_pred CCCCCCHHHHhHHHHhHHHHHhHhhHhhhhhhhchhhhcCCCccchhhccccccHHHHhhhhhChHHHHHHHHHHHHHHh
Q 047176 58 TTTSLTAEQQSRIEFNRYVAKSKRNLKACSQKVSKAKEEGSGYVKLEELLAEETWLEVLHGELQKPYAKRLCEFVEKEIK 137 (222)
Q Consensus 58 ~~~~ls~eq~~r~~~nk~~A~~kr~~~l~~~~~~~ak~~~~~~~~l~~~~i~~sW~~~L~~e~~k~yf~~L~~fl~~e~~ 137 (222)
.++.|.+||+-+-+.|.. +.+++...+++++..++. .++.|++.+++++|+..|.+||.|+||.+|.+||.+|++
T Consensus 33 ~~~ai~~e~~~~a~e~~~--~~k~~~~~~~E~l~~~~r---~ll~Le~~~~~esW~~~L~~EF~KpYf~~lk~Fl~~E~~ 107 (297)
T KOG2994|consen 33 SSAAIKPEKKPAAKENPS--KSKLNAPVSAENLTKAQR---ALLRLEERTIGESWFKHLKGEFGKPYFIKLKGFLAEERN 107 (297)
T ss_pred cccccCcccccccccCCC--CCcccccccHhhhhHHHH---HHhhHHHhhcChHHHHhhhhhhcCHHHHHHHHHHHHhhc
Confidence 455688888888888877 556666677777766444 678888888999999999999999999999999999986
Q ss_pred cCCCeeeCCcchhhhhhhcCCCCCeEEEEEcCCCCCCCCCCceeecccCCCCCCCccHHHHHHHHHhcc-CCCCCCCCCc
Q 047176 138 DSGVDIFPPQHLIFNALNTTPFDRVKAVIIGQDPYHGPGQAMGLSFSVPEGVKIPSSLANIFKEIHQDV-GCRLPSHGNL 216 (222)
Q Consensus 138 ~~~~~I~P~~~~IF~af~~tp~~~VKVVILGQDPYh~pgqA~GLAFSV~~~v~iPpSLrNIyKEL~~D~-g~~~p~hGdL 216 (222)
. .+||||+++||+|+++||+++||||||||||||++||||||||||++|++.||||+||||||+.|| ||.+|.||||
T Consensus 108 ~--~~vfPP~~~Ift~~~~~P~~kvKVVIiGQDPYHn~nQAhGLsFSV~~gvp~PPSLkNIYkEl~~Di~df~~P~hGdL 185 (297)
T KOG2994|consen 108 S--YTVFPPPHQIFTWTRLTPFDKVKVVIIGQDPYHNPNQAHGLSFSVQPGVPPPPSLKNIYKELSSDIEDFVIPKHGDL 185 (297)
T ss_pred C--CcccCCHHHhhhhhhcccccceeEEEeccCCCCCCcccceeeeecCCCCCCCchHHHHHHHHhccccccccCCCCCc
Confidence 3 579999999999999999999999999999999999999999999999999999999999999999 6999999999
Q ss_pred cccccC
Q 047176 217 EKWAVQ 222 (222)
Q Consensus 217 ~~WAkQ 222 (222)
++||+|
T Consensus 186 ~~WA~Q 191 (297)
T KOG2994|consen 186 SGWAKQ 191 (297)
T ss_pred hhhhhc
Confidence 999998
No 2
>COG0692 Ung Uracil DNA glycosylase [DNA replication, recombination, and repair]
Probab=100.00 E-value=5.7e-50 Score=348.17 Aligned_cols=114 Identities=57% Similarity=1.018 Sum_probs=109.7
Q ss_pred ccccHHHHhhhhhChHHHHHHHHHHHHHHhcCCCeeeCCcchhhhhhhcCCCCCeEEEEEcCCCCCCCCCCceeecccCC
Q 047176 108 AEETWLEVLHGELQKPYAKRLCEFVEKEIKDSGVDIFPPQHLIFNALNTTPFDRVKAVIIGQDPYHGPGQAMGLSFSVPE 187 (222)
Q Consensus 108 i~~sW~~~L~~e~~k~yf~~L~~fl~~e~~~~~~~I~P~~~~IF~af~~tp~~~VKVVILGQDPYh~pgqA~GLAFSV~~ 187 (222)
+..+|+++|.+|+.++||.+|.+||.+|++.| .+|||+.++||+||++||+++||||||||||||+|||||||||||++
T Consensus 3 ~~~~W~~~l~~e~~k~yf~~l~~fl~~e~~~g-~~i~P~~~~iF~af~~tp~~~vKVVIlGQDPYh~p~qAhGLsFSV~~ 81 (223)
T COG0692 3 LELSWKEFLKPEFKKPYFQELLEFLKQEYASG-KTIYPPKEDIFNAFRLTPFDDVKVVILGQDPYHGPGQAHGLSFSVPP 81 (223)
T ss_pred cchhHHHHHHHhhccHHHHHHHHHHHHHHHcC-CeeCCCHHHHhHHHhcCChhheEEEEEecCCCCCCCccceeeeecCC
Confidence 46799999999999999999999999999875 46999999999999999999999999999999999999999999999
Q ss_pred CCCCCccHHHHHHHHHhccC-CCCCCCCCccccccC
Q 047176 188 GVKIPSSLANIFKEIHQDVG-CRLPSHGNLEKWAVQ 222 (222)
Q Consensus 188 ~v~iPpSLrNIyKEL~~D~g-~~~p~hGdL~~WAkQ 222 (222)
++++||||+||||||+.|+| +..|.||||++||+|
T Consensus 82 ~v~~PpSL~NI~kEL~~dl~~~~~~~~g~L~~WA~Q 117 (223)
T COG0692 82 GVKIPPSLKNIYKELEADLGGFPIPNHGDLTSWAEQ 117 (223)
T ss_pred CCCCCchHHHHHHHHHhhhCCCCCCCCCccHHHHHh
Confidence 99999999999999999997 689999999999998
No 3
>PHA03202 uracil DNA glycosylase; Provisional
Probab=100.00 E-value=1.7e-49 Score=360.87 Aligned_cols=187 Identities=31% Similarity=0.500 Sum_probs=140.3
Q ss_pred CCCccccccccchhhhccccCCCcCCCCCCCCCCcchhhhhhccCCCCCCCCCCCCCCCCCCCHHHHhHHHHhHHHHHhH
Q 047176 1 MGSSKTIMDLFQPAAKRFKLSSPHCCASDNTPNSEPLLQVVSRKLPLSSKSSGSSSATTTSLTAEQQSRIEFNRYVAKSK 80 (222)
Q Consensus 1 ~~~~kt~~~~f~p~~kr~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~eq~~r~~~nk~~A~~k 80 (222)
|..+++++.+|+++..++-...|..+.....+....+ +++.|.. .++ ....++++.. +..|+......
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~------~~~-~~~~~~~~~~-~~~~~~~~~~~ 89 (313)
T PHA03202 22 EENGQRSSTPTSEAGQPACVVSPAPCETGAPPPKRRR----PCGLPQG------VSL-INTSVSTHPL-FTTNCQSSWED 89 (313)
T ss_pred cccccccccccCCCCCCcccCCCccccCCCCcccccc----ccCCCCC------ccc-CCCCCCCCcc-ccccCcchHHH
Confidence 5678999999999887754455544432211111111 1122221 111 1124444443 33443322111
Q ss_pred hhHhhhhhhhchhhhcCCCccchhhccccccHHHHhhhhhChHHHHHHHHHHHHHHhcCCCeeeCCcchhhhhhhcCCCC
Q 047176 81 RNLKACSQKVSKAKEEGSGYVKLEELLAEETWLEVLHGELQKPYAKRLCEFVEKEIKDSGVDIFPPQHLIFNALNTTPFD 160 (222)
Q Consensus 81 r~~~l~~~~~~~ak~~~~~~~~l~~~~i~~sW~~~L~~e~~k~yf~~L~~fl~~e~~~~~~~I~P~~~~IF~af~~tp~~ 160 (222)
-+.++.++++|+++|..|+.++||++|..||+++++. .+|||+.++||+||++||++
T Consensus 90 ---------------------~~~~~~i~~~W~~~L~~e~~k~yf~~l~~~l~~~~~~--~~I~P~~e~IF~af~~tp~~ 146 (313)
T PHA03202 90 ---------------------VEREFNIAPSWRPILEREMQQPYVRLLLNEYKLRCAR--EEVFPPKEDIFAWTRFSPPE 146 (313)
T ss_pred ---------------------HHhhccCCHHHHHHHHhhhccHHHHHHHHHHHHHHhC--CcccCCHHHHHHHhhcCCHH
Confidence 0112245789999999999999999999999999863 35999999999999999999
Q ss_pred CeEEEEEcCCCCCCCCCCceeecccCCCCCCCccHHHHHHHHHhcc-CCCCCCCCCccccccC
Q 047176 161 RVKAVIIGQDPYHGPGQAMGLSFSVPEGVKIPSSLANIFKEIHQDV-GCRLPSHGNLEKWAVQ 222 (222)
Q Consensus 161 ~VKVVILGQDPYh~pgqA~GLAFSV~~~v~iPpSLrNIyKEL~~D~-g~~~p~hGdL~~WAkQ 222 (222)
+||||||||||||++||||||||||++++++||||+||||||.+|| |+..|.||||+.||+|
T Consensus 147 ~VKVVIlGQDPYh~~gqA~GLAFSV~~gv~~PpSLrNIfKEL~~d~~g~~~p~~G~L~~WAkQ 209 (313)
T PHA03202 147 KVRVVIVGQDPYHAPGQAHGLAFSVRKGVPVPPSLRNIYSAVQKSYPSFRPPMHGFLEKWAEQ 209 (313)
T ss_pred HeEEEEEeCCCCCCCCccceEEEEecCCCCCCcCHHHHHHHHHHHcCCCCCCCCCCHHHHHhc
Confidence 9999999999999999999999999999999999999999999999 6999999999999998
No 4
>PHA03204 uracil DNA glycosylase; Provisional
Probab=100.00 E-value=6.3e-49 Score=358.03 Aligned_cols=114 Identities=39% Similarity=0.626 Sum_probs=108.5
Q ss_pred cccccHHHHhhhhhChHHHHHHHHHHHHHHhcCCCeeeCCcchhhhhhhcCCCCCeEEEEEcCCCCCCCCCCceeecccC
Q 047176 107 LAEETWLEVLHGELQKPYAKRLCEFVEKEIKDSGVDIFPPQHLIFNALNTTPFDRVKAVIIGQDPYHGPGQAMGLSFSVP 186 (222)
Q Consensus 107 ~i~~sW~~~L~~e~~k~yf~~L~~fl~~e~~~~~~~I~P~~~~IF~af~~tp~~~VKVVILGQDPYh~pgqA~GLAFSV~ 186 (222)
.++++|+++|..|+.++||++|..||+++++. .+|||+.++||+||++||+++||||||||||||++||||||||||+
T Consensus 101 ~~~~~W~~~L~~e~~k~y~~~l~~~l~~~~~~--~~IyPp~~~IF~af~~tp~~~VKVVILGQDPYh~pgqA~GLaFSV~ 178 (322)
T PHA03204 101 NIDCRWKEILLPELCCPTGSKILAEYERRARY--EEVYPPKSDIFAWTRYCAPDHVKVVIVGQDPYANPGQAHGLAFSVK 178 (322)
T ss_pred cCCHHHHHHHHHHhccHHHHHHHHHHHHHHhC--CccCCCHHHHHHHHhcCChhHeEEEEEecCCCCCCCccceEEEEcC
Confidence 45789999999999999999999999987753 3599999999999999999999999999999999999999999999
Q ss_pred CCCCCCccHHHHHHHHHhcc-CCCCCCCCCccccccC
Q 047176 187 EGVKIPSSLANIFKEIHQDV-GCRLPSHGNLEKWAVQ 222 (222)
Q Consensus 187 ~~v~iPpSLrNIyKEL~~D~-g~~~p~hGdL~~WAkQ 222 (222)
+++++||||+||||||.+|| |+..|.||||++||+|
T Consensus 179 ~gv~iPpSLrNIfKEL~~d~~g~~~p~~G~L~~WAkQ 215 (322)
T PHA03204 179 PGSPIPPSLKNILAAVKACYPSIELGSHGCLEDWAKR 215 (322)
T ss_pred CCCCCCccHHHHHHHHHHhcCCCCCCCCCCHHHHHhc
Confidence 99999999999999999999 6999999999999998
No 5
>PHA03201 uracil DNA glycosylase; Provisional
Probab=100.00 E-value=2.8e-48 Score=353.56 Aligned_cols=114 Identities=40% Similarity=0.704 Sum_probs=108.9
Q ss_pred cccccHHHHhhhhhChHHHHHHHHHHHHHHhcCCCeeeCCcchhhhhhhcCCCCCeEEEEEcCCCCCCCCCCceeecccC
Q 047176 107 LAEETWLEVLHGELQKPYAKRLCEFVEKEIKDSGVDIFPPQHLIFNALNTTPFDRVKAVIIGQDPYHGPGQAMGLSFSVP 186 (222)
Q Consensus 107 ~i~~sW~~~L~~e~~k~yf~~L~~fl~~e~~~~~~~I~P~~~~IF~af~~tp~~~VKVVILGQDPYh~pgqA~GLAFSV~ 186 (222)
.++++|+++|..|+.++||++|..||+++++. .+|||+.++||+||++||+++||||||||||||++||||||||||+
T Consensus 101 ~i~~~W~~~L~~e~~k~y~~~l~~~l~~~~~~--~~i~P~~~~IF~af~~tp~~~VKVVILGQDPYh~pgqA~GLaFSV~ 178 (318)
T PHA03201 101 LVGDAWRPLLEPELANPLTARLMAEYERRCRT--EEVLPPREDVFSWTRYCTPDEVRVVIIGQDPYHQPGQAHGLAFSVR 178 (318)
T ss_pred cCCHHHHHHHHHHhccHHHHHHHHHHHHHhhC--CcccCCHHHHHHHhccCCHhHcEEEEEecCCCCCCCCcceEeeecC
Confidence 35789999999999999999999999988864 3599999999999999999999999999999999999999999999
Q ss_pred CCCCCCccHHHHHHHHHhcc-CCCCCCCCCccccccC
Q 047176 187 EGVKIPSSLANIFKEIHQDV-GCRLPSHGNLEKWAVQ 222 (222)
Q Consensus 187 ~~v~iPpSLrNIyKEL~~D~-g~~~p~hGdL~~WAkQ 222 (222)
+++++||||+||||||.+|| |+..|.||||+.||+|
T Consensus 179 ~gv~~PpSLrNIfKEL~~d~~g~~~p~~G~L~~WAkQ 215 (318)
T PHA03201 179 PGTPAPPSLRNILAAVRNCCPDARMSGHGCLEKWARG 215 (318)
T ss_pred CCCCCChhHHHHHHHHHHhccCCCCCCCcCHHHHhhc
Confidence 99999999999999999999 8999999999999998
No 6
>PHA03199 uracil DNA glycosylase; Provisional
Probab=100.00 E-value=2.8e-48 Score=351.41 Aligned_cols=117 Identities=40% Similarity=0.739 Sum_probs=110.9
Q ss_pred hccccccHHHHhhhhhChHHHHHHHHHHHHHHhcCCCeeeCCcchhhhhhhcCCCCCeEEEEEcCCCCCCCCCCceeecc
Q 047176 105 ELLAEETWLEVLHGELQKPYAKRLCEFVEKEIKDSGVDIFPPQHLIFNALNTTPFDRVKAVIIGQDPYHGPGQAMGLSFS 184 (222)
Q Consensus 105 ~~~i~~sW~~~L~~e~~k~yf~~L~~fl~~e~~~~~~~I~P~~~~IF~af~~tp~~~VKVVILGQDPYh~pgqA~GLAFS 184 (222)
++.++++|+++|..|+.++||++|..||..+++.+ .+|||+.++||+||++||+++||||||||||||++|||||||||
T Consensus 84 ~~~~~~~W~~~L~~e~~k~yf~~L~~~l~~~~~~~-~~IyPp~~~IF~af~~tp~~~VKVVILGQDPYh~~gqA~GLaFS 162 (304)
T PHA03199 84 EFCIDPEWHDLLRDEFEEPYAKGIFEEYNQLLNNG-EEIFPIKGDIFAWTRFCGPEKIRVVIIGQDPYHGAGHAHGLAFS 162 (304)
T ss_pred hccCCHHHHHHHHHHhccHHHHHHHHHHHHHHHcC-CeEcCCHHHHHHHHhcCCHHHcEEEEEecCCCCCCCccceEEEe
Confidence 34567899999999999999999999999998654 46999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCccHHHHHHHHHhcc-CCCCCCCCCccccccC
Q 047176 185 VPEGVKIPSSLANIFKEIHQDV-GCRLPSHGNLEKWAVQ 222 (222)
Q Consensus 185 V~~~v~iPpSLrNIyKEL~~D~-g~~~p~hGdL~~WAkQ 222 (222)
|++|+++||||+||||||.+|| |+..|.||||++||+|
T Consensus 163 V~~gv~iPPSL~NIfKEL~~dl~g~~~p~~G~L~~WAkQ 201 (304)
T PHA03199 163 VKRGIPIPPSLKNIFAALMESYPHLPLPTHGCLDNWARQ 201 (304)
T ss_pred cCCCCCCCccHHHHHHHHHHhcCCCCCCCCCCHHHHHhc
Confidence 9999999999999999999999 8999999999999998
No 7
>TIGR00628 ung uracil-DNA glycosylase. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=1.2e-47 Score=333.64 Aligned_cols=112 Identities=48% Similarity=0.840 Sum_probs=107.6
Q ss_pred ccHHHHhhhhhChHHHHHHHHHHHHHHhcCCCeeeCCcchhhhhhhcCCCCCeEEEEEcCCCCCCCCCCceeecccCCCC
Q 047176 110 ETWLEVLHGELQKPYAKRLCEFVEKEIKDSGVDIFPPQHLIFNALNTTPFDRVKAVIIGQDPYHGPGQAMGLSFSVPEGV 189 (222)
Q Consensus 110 ~sW~~~L~~e~~k~yf~~L~~fl~~e~~~~~~~I~P~~~~IF~af~~tp~~~VKVVILGQDPYh~pgqA~GLAFSV~~~v 189 (222)
++|+++|..|+.++||++|.+||+++++.+ .+|||+.++||+||++||+++||||||||||||++||||||||||++++
T Consensus 2 ~~W~~~l~~e~~k~y~~~l~~~l~~~~~~~-~~i~P~~~~iF~af~~~p~~~vKVVIlGQDPYh~~gqA~GLaFSv~~~~ 80 (212)
T TIGR00628 2 PSWRAFLQPEFKKPYFQELLAFVKRERATQ-ETVYPPKEDVFAWTRFCPPEDVKVVILGQDPYHGPGQAHGLAFSVKPGV 80 (212)
T ss_pred chHHHHHHhhhccHHHHHHHHHHHHHHHcC-CeEcCCHHHHHHHHhcCChhheEEEEecCCCCCCCCCcceeeeECCCCC
Confidence 589999999999999999999999998654 4699999999999999999999999999999999999999999999999
Q ss_pred CCCccHHHHHHHHHhcc-CCCCCCCCCccccccC
Q 047176 190 KIPSSLANIFKEIHQDV-GCRLPSHGNLEKWAVQ 222 (222)
Q Consensus 190 ~iPpSLrNIyKEL~~D~-g~~~p~hGdL~~WAkQ 222 (222)
++||||+||||||.+|| |+..|.||||++||+|
T Consensus 81 ~~PpSL~NI~kEl~~d~~~~~~p~~g~L~~WA~Q 114 (212)
T TIGR00628 81 PIPPSLKNIFKELEADYPDFPPPKHGCLEAWARQ 114 (212)
T ss_pred CCCchHHHHHHHHHHHcCCCCCCCCCChHHHHhc
Confidence 99999999999999999 5999999999999998
No 8
>PHA03347 uracil DNA glycosylase; Provisional
Probab=100.00 E-value=2.1e-47 Score=338.95 Aligned_cols=118 Identities=42% Similarity=0.681 Sum_probs=110.6
Q ss_pred chhhccccccHHHHhh-hhhChHHHHHHHHHHHHHHhcCCCeeeCCcchhhhhhhcCCCCCeEEEEEcCCCCCCCCCCce
Q 047176 102 KLEELLAEETWLEVLH-GELQKPYAKRLCEFVEKEIKDSGVDIFPPQHLIFNALNTTPFDRVKAVIIGQDPYHGPGQAMG 180 (222)
Q Consensus 102 ~l~~~~i~~sW~~~L~-~e~~k~yf~~L~~fl~~e~~~~~~~I~P~~~~IF~af~~tp~~~VKVVILGQDPYh~pgqA~G 180 (222)
..+.+.++++|+++|. .|+.++||++|..||+++++. .+|||+.++||+||++||+++||||||||||||+ |||||
T Consensus 20 ~~~~~~~~~~W~~~l~~~e~~k~y~~~l~~~l~~~~~~--~~iyP~~~~iF~af~~tp~~~vKVVIlGQDPYh~-gqA~G 96 (252)
T PHA03347 20 GDEDLLLSDPWLDFLQLSPFLKQKLLALLNCVRELRKQ--TVIYPPEDRIMAWSYLCDPEDIKVVILGQDPYHG-GQANG 96 (252)
T ss_pred chhhccCCHHHHHHhcccccchHHHHHHHHHHHHHHhc--CCccCCHHHHHHHHhcCChhHcEEEEEecCCCCC-Cccce
Confidence 3445567889999999 799999999999999998864 3599999999999999999999999999999999 99999
Q ss_pred eecccCCCCCCCccHHHHHHHHHhcc-CCCCCCCCCccccccC
Q 047176 181 LSFSVPEGVKIPSSLANIFKEIHQDV-GCRLPSHGNLEKWAVQ 222 (222)
Q Consensus 181 LAFSV~~~v~iPpSLrNIyKEL~~D~-g~~~p~hGdL~~WAkQ 222 (222)
|||||++++++||||+||||||++|| |+..|.||||++||+|
T Consensus 97 LaFSV~~~~~~PpSL~NIfKEL~~d~~~~~~p~~G~L~~WA~Q 139 (252)
T PHA03347 97 LAFSVAYGFPVPPSLRNIFAELHRSVPDFSPPDHGCLDAWARQ 139 (252)
T ss_pred EEEecCCCCCCCccHHHHHHHHHhhccCCCCCCCCChHHHHhc
Confidence 99999999999999999999999999 8999999999999998
No 9
>PHA03200 uracil DNA glycosylase; Provisional
Probab=100.00 E-value=2.8e-47 Score=338.48 Aligned_cols=114 Identities=32% Similarity=0.635 Sum_probs=108.6
Q ss_pred ccccccHHHHhh-hhhChHHHHHHHHHHHHHHhcCCCeeeCCcchhhhhhhcCCCCCeEEEEEcCCCCCCCCCCceeecc
Q 047176 106 LLAEETWLEVLH-GELQKPYAKRLCEFVEKEIKDSGVDIFPPQHLIFNALNTTPFDRVKAVIIGQDPYHGPGQAMGLSFS 184 (222)
Q Consensus 106 ~~i~~sW~~~L~-~e~~k~yf~~L~~fl~~e~~~~~~~I~P~~~~IF~af~~tp~~~VKVVILGQDPYh~pgqA~GLAFS 184 (222)
+.++++|+++|. .|+.++||++|.+||.++++. .+|||+.++||+||++||+++||||||||||||+ |||||||||
T Consensus 30 ~~~~~~W~~~L~~~e~~k~y~~~l~~~l~~~~~~--~~i~P~~~~IF~af~~tp~~~vKVVIlGQDPYh~-gqA~GLaFS 106 (255)
T PHA03200 30 FGINEDWLRFLNLSDHDISQLRRIVDAVDRDRQR--LTVYPPPEDVHRWSRLCSPEDVKVVIVGQDPYHD-GSACGLAFG 106 (255)
T ss_pred ccCCHHHHHHhcccccccHHHHHHHHHHHHHHhC--CeecCCHHHHHHHHhcCChhheEEEEEecCCCCC-CccceEEEE
Confidence 356889999999 799999999999999999864 3599999999999999999999999999999999 999999999
Q ss_pred cCCCCCCCccHHHHHHHHHhcc-CCCCCCCCCccccccC
Q 047176 185 VPEGVKIPSSLANIFKEIHQDV-GCRLPSHGNLEKWAVQ 222 (222)
Q Consensus 185 V~~~v~iPpSLrNIyKEL~~D~-g~~~p~hGdL~~WAkQ 222 (222)
|++++++||||+||||||++|| |+..|.||||++||+|
T Consensus 107 V~~~~~~PpSL~NIfKEL~~d~~g~~~p~~G~L~~WAkQ 145 (255)
T PHA03200 107 TVRGRSAPPSLKNVFRELERTVPNFSRPDSGCLDSWCRQ 145 (255)
T ss_pred eCCCCCCCccHHHHHHHHHhhcCCCCCCCCCChhhHHhC
Confidence 9999999999999999999999 8999999999999998
No 10
>PRK05254 uracil-DNA glycosylase; Provisional
Probab=100.00 E-value=2.1e-46 Score=327.98 Aligned_cols=115 Identities=58% Similarity=1.011 Sum_probs=109.9
Q ss_pred cccccHHHHhhhhhChHHHHHHHHHHHHHHhcCCCeeeCCcchhhhhhhcCCCCCeEEEEEcCCCCCCCCCCceeecccC
Q 047176 107 LAEETWLEVLHGELQKPYAKRLCEFVEKEIKDSGVDIFPPQHLIFNALNTTPFDRVKAVIIGQDPYHGPGQAMGLSFSVP 186 (222)
Q Consensus 107 ~i~~sW~~~L~~e~~k~yf~~L~~fl~~e~~~~~~~I~P~~~~IF~af~~tp~~~VKVVILGQDPYh~pgqA~GLAFSV~ 186 (222)
.++++|+++|..|+.++||.+|..||.+++..+ .+|||+.++||+||++||+++||||||||||||++||||||||||+
T Consensus 5 ~~~~~W~~~l~~e~~~~y~~~l~~~l~~~~~~~-~~i~P~~~~iF~a~~~~p~~~vKVVIlGQDPY~~~gqA~GLaFSv~ 83 (224)
T PRK05254 5 LLEPSWKEVLKPEFKKPYFQELLEFLRAERAAG-KTIYPPGEDIFRAFNLTPFDDVKVVILGQDPYHGPGQAHGLSFSVP 83 (224)
T ss_pred ccChhHHHHHHhHhccHHHHHHHHHHHHHHHcC-CeECCCHHHHHHHHhcCCHhHeEEEEEecCCCCCCCCcceEeeeCC
Confidence 357899999999999999999999999997554 5699999999999999999999999999999999999999999999
Q ss_pred CCCCCCccHHHHHHHHHhccCCCCCCCCCccccccC
Q 047176 187 EGVKIPSSLANIFKEIHQDVGCRLPSHGNLEKWAVQ 222 (222)
Q Consensus 187 ~~v~iPpSLrNIyKEL~~D~g~~~p~hGdL~~WAkQ 222 (222)
+++++||||+||||||.+|||+..|.||||++||+|
T Consensus 84 ~~~~~PpSL~NI~kel~~d~~~~~p~~g~L~~Wa~Q 119 (224)
T PRK05254 84 PGVPIPPSLRNIFKELEDDLGFPIPNHGDLTSWAEQ 119 (224)
T ss_pred CCCCCCccHHHHHHHHHHhcCCCCCCCCChHHHHhC
Confidence 999999999999999999999999999999999998
No 11
>PF03167 UDG: Uracil DNA glycosylase superfamily; InterPro: IPR005122 This entry represents various uracil-DNA glycosylases and related DNA glycosylases (3.2.2 from EC), such as uracil-DNA glycosylase [], thermophilic uracil-DNA glycosylase [], G:T/U mismatch-specific DNA glycosylase (Mug) [], and single-strand selective monofunctional uracil-DNA glycosylase (SMUG1) []. These proteins have a 3-layer alpha/beta/alpha structure. Uracil-DNA glycosylases are DNA repair enzymes that excise uracil residues from DNA by cleaving the N-glycosylic bond, initiating the base excision repair pathway. Uracil in DNA can arise either through the deamination of cytosine to form mutagenic U:G mispairs, or through the incorporation of dUMP by DNA polymerase to form U:A pairs []. These aberrant uracil residues are genotoxic []. The sequence of uracil-DNA glycosylase is extremely well conserved [] in bacteria and eukaryotes as well as in herpes viruses. More distantly related uracil-DNA glycosylases are also found in poxviruses []. In eukaryotic cells, UNG activity is found in both the nucleus and the mitochondria. Human UNG1 protein is transported to both the mitochondria and the nucleus []. The N-terminal 77 amino acids of UNG1 seem to be required for mitochondrial localization, but the presence of a mitochondrial transit peptide has not been directly demonstrated. The most N-terminal conserved region contains an aspartic acid residue which has been proposed, based on X-ray structures [] to act as a general base in the catalytic mechanism. ; PDB: 1UI0_A 1UI1_A 2C2P_A 2C2Q_A 1MTL_B 1MWI_A 1MUG_A 1MWJ_A 1OKB_B 1OE6_A ....
Probab=94.26 E-value=0.012 Score=45.89 Aligned_cols=40 Identities=33% Similarity=0.495 Sum_probs=32.2
Q ss_pred CCCeEEEEEcCCCCCCCCCCceeecccCCCCCCCccHHHHHHHHH
Q 047176 159 FDRVKAVIIGQDPYHGPGQAMGLSFSVPEGVKIPSSLANIFKEIH 203 (222)
Q Consensus 159 ~~~VKVVILGQDPYh~pgqA~GLAFSV~~~v~iPpSLrNIyKEL~ 203 (222)
..+.||+||||||+.+ ..++|..|+-+ -...|.+|++++.
T Consensus 5 ~~~~~vlivg~~P~~~-~~~~g~~f~~~----~~~~l~~~l~~~g 44 (152)
T PF03167_consen 5 NPNARVLIVGQDPGPG-ENRTGRPFSGP----SGNNLWKILKRVG 44 (152)
T ss_dssp GCTESEEEEESSTCHS-THHHSSSSGSH----HHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCChh-HHHhCCCceec----chhhhhhhhhhhh
Confidence 3678999999999995 46789999876 3467888888774
No 12
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=75.59 E-value=2.3 Score=35.84 Aligned_cols=39 Identities=15% Similarity=0.544 Sum_probs=33.5
Q ss_pred CeeeCCcchhhhhhhcCCCCCeEEEEEcCCCCCCCCCCceeec
Q 047176 141 VDIFPPQHLIFNALNTTPFDRVKAVIIGQDPYHGPGQAMGLSF 183 (222)
Q Consensus 141 ~~I~P~~~~IF~af~~tp~~~VKVVILGQDPYh~pgqA~GLAF 183 (222)
...|-..|+||.-|..| .+||.||+|=|=+... .+|.||
T Consensus 44 lSfyttEEqiyELFs~c--G~irriiMGLdr~kkt--pCGFCF 82 (153)
T KOG0121|consen 44 LSFYTTEEQIYELFSKC--GDIRRIIMGLDRFKKT--PCGFCF 82 (153)
T ss_pred eeeeecHHHHHHHHHhc--cchheeEeccccCCcC--ccceEE
Confidence 34567899999999876 6899999999998764 799999
No 13
>PRK07735 NADH dehydrogenase subunit C; Validated
Probab=73.54 E-value=25 Score=34.49 Aligned_cols=30 Identities=20% Similarity=0.290 Sum_probs=25.0
Q ss_pred CCccHHHHH-------HHHHhccCCCCCCCCCccccc
Q 047176 191 IPSSLANIF-------KEIHQDVGCRLPSHGNLEKWA 220 (222)
Q Consensus 191 iPpSLrNIy-------KEL~~D~g~~~p~hGdL~~WA 220 (222)
.=|||.+|| .|+.+-||+..-+|-||..|-
T Consensus 373 ~VPSIt~I~P~AnW~EREa~DMFGI~FeGHPDLRRIL 409 (430)
T PRK07735 373 QVESVTPLWKGANWPEREAYDLLGIVFKGHPNLSRIL 409 (430)
T ss_pred CCCChHHhhccCChHHHHHHHHhCcccCCCCCCccCC
Confidence 348999988 577777899999999998884
No 14
>cd04890 ACT_AK-like_1 ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the first of two ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids, lysine, threonine, methionine, and isoleucine. This CD, includes the first ACT domain of the Escherichia coli (EC) isoenzyme, AKIII (LysC) and the Arabidopsis isoenzyme, asparate kinase 1, both enzymes monofunctional and involved in lysine synthesis, as well as the the first ACT domain of Bacillus subtilis (BS) isoenzyme, AKIII (YclM), and of the Saccharomyces cerevisiae AK (Hom3). Also included are the first ACT domains of the Methylomicrobium alcaliphilum AK, the first enzyme of the ectoine biosynthetic pathway. Members of this CD bel
Probab=37.40 E-value=39 Score=22.69 Aligned_cols=45 Identities=16% Similarity=0.368 Sum_probs=32.0
Q ss_pred chhhhhhhcCCCCCeEEEEEcCCCCCCCCCCceeecccCCCCCCCccHHHHHHHHH
Q 047176 148 HLIFNALNTTPFDRVKAVIIGQDPYHGPGQAMGLSFSVPEGVKIPSSLANIFKEIH 203 (222)
Q Consensus 148 ~~IF~af~~tp~~~VKVVILGQDPYh~pgqA~GLAFSV~~~v~iPpSLrNIyKEL~ 203 (222)
..||++|.. .+|.|..+.|+ ++.++|.+... ..+..++.|.+||+
T Consensus 18 ~~if~~l~~---~~i~v~~i~t~-------~~~is~~v~~~-~~~~~~~~l~~~l~ 62 (62)
T cd04890 18 RKIFEILEK---HGISVDLIPTS-------ENSVTLYLDDS-LLPKKLKRLLAELE 62 (62)
T ss_pred HHHHHHHHH---cCCeEEEEecC-------CCEEEEEEehh-hhhHHHHHHHHhhC
Confidence 456666654 68889999772 37899999774 34678888877763
No 15
>PTZ00390 ubiquitin-conjugating enzyme; Provisional
Probab=35.13 E-value=53 Score=27.20 Aligned_cols=45 Identities=27% Similarity=0.440 Sum_probs=27.0
Q ss_pred CCeeeCCcchhhhhhhcCCCCCeEEEEEc--CCCCCCCCCCceeecccCCCCC-CCccH
Q 047176 140 GVDIFPPQHLIFNALNTTPFDRVKAVIIG--QDPYHGPGQAMGLSFSVPEGVK-IPSSL 195 (222)
Q Consensus 140 ~~~I~P~~~~IF~af~~tp~~~VKVVILG--QDPYh~pgqA~GLAFSV~~~v~-iPpSL 195 (222)
++.++|..++++.| +|+|.| -.||.| |. -=+.+.++.+++ .||.+
T Consensus 21 ~i~~~~~~~d~~~w---------~~~i~GP~~tpY~g-g~-f~~~i~~p~~YP~~pP~v 68 (152)
T PTZ00390 21 GIKAEPDPGNYRHF---------KILMEGPDGTPYEG-GY-YKLELFLPEQYPMEPPKV 68 (152)
T ss_pred CeEEEECCCCccEE---------EEEEEcCCCCCCcC-cE-EEEEEECccccCCCCCEE
Confidence 35677776665554 899999 467876 22 124445566665 45543
No 16
>COG4868 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.30 E-value=15 Score=35.51 Aligned_cols=90 Identities=22% Similarity=0.366 Sum_probs=63.3
Q ss_pred ccHHHHhhhhhChHHHHHHHHHHHHHHhcCCCeeeCCcchhhhhhhcCCCCCeEEEEEcCCCCCCCCCCceeecccCCCC
Q 047176 110 ETWLEVLHGELQKPYAKRLCEFVEKEIKDSGVDIFPPQHLIFNALNTTPFDRVKAVIIGQDPYHGPGQAMGLSFSVPEGV 189 (222)
Q Consensus 110 ~sW~~~L~~e~~k~yf~~L~~fl~~e~~~~~~~I~P~~~~IF~af~~tp~~~VKVVILGQDPYh~pgqA~GLAFSV~~~v 189 (222)
+.-+++-++|+-..||+.+.+|-.++.. ..++-..+.+++-+- |-++|-|||....+---..||- ||||..|.|.
T Consensus 293 ea~~eAs~QEIiRRYfkt~~D~k~e~~~---~~~~krie~~M~~~G-~t~eDRkVv~~A~~k~E~tg~p-a~A~elpdG~ 367 (493)
T COG4868 293 EAAREASKQEIIRRYFKTLVDFKAENVD---EEAVKRIELLMNDLG-LTPEDRKVVVFARQKAELTGQP-ALAFELPDGK 367 (493)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhcccc---HHHHHHHHHHHhhcC-CChhcchhhhHhHHHHHhcCCC-ceEEEcCCCc
Confidence 3456777788889999999998665432 234555677888776 4558999999877766666664 9999998863
Q ss_pred -----------CCCccHHHHHHHHHh
Q 047176 190 -----------KIPSSLANIFKEIHQ 204 (222)
Q Consensus 190 -----------~iPpSLrNIyKEL~~ 204 (222)
+...-+.|-.|+|.+
T Consensus 368 iiTGK~SeL~g~~aA~ilNalK~la~ 393 (493)
T COG4868 368 IITGKTSELFGPTAAAILNALKYLAN 393 (493)
T ss_pred eeeccchhhcCccHHHHHHHHHHHhc
Confidence 112345677777754
No 17
>cd04934 ACT_AK-Hom3_1 CT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydro
Probab=24.76 E-value=97 Score=22.42 Aligned_cols=46 Identities=17% Similarity=0.249 Sum_probs=32.3
Q ss_pred hhhhhhhcCCCCCeEEEEEcCCCCCCCCCCceeecccCCCCCCCccHHHHHHHHHh
Q 047176 149 LIFNALNTTPFDRVKAVIIGQDPYHGPGQAMGLSFSVPEGVKIPSSLANIFKEIHQ 204 (222)
Q Consensus 149 ~IF~af~~tp~~~VKVVILGQDPYh~pgqA~GLAFSV~~~v~iPpSLrNIyKEL~~ 204 (222)
.||++|. =.+|.|-++.|.. ..++|.|+...--.+.|.+|-.||++
T Consensus 20 ~If~~la---~~~I~vd~I~~s~-------~~isftv~~~~~~~~~l~~l~~el~~ 65 (73)
T cd04934 20 RIFAILD---KYRLSVDLISTSE-------VHVSMALHMENAEDTNLDAAVKDLQK 65 (73)
T ss_pred HHHHHHH---HcCCcEEEEEeCC-------CEEEEEEehhhcChHHHHHHHHHHHH
Confidence 3455554 4778888888721 67999998763223499999999986
No 18
>PHA03307 transcriptional regulator ICP4; Provisional
Probab=24.33 E-value=61 Score=36.01 Aligned_cols=88 Identities=15% Similarity=0.195 Sum_probs=46.5
Q ss_pred cccccHHHHhhhhhChHHHHHHHHHHHHHHhcCC---------CeeeCCcchhhhhhhcC-CCCCeEEEEEcCCCCCCCC
Q 047176 107 LAEETWLEVLHGELQKPYAKRLCEFVEKEIKDSG---------VDIFPPQHLIFNALNTT-PFDRVKAVIIGQDPYHGPG 176 (222)
Q Consensus 107 ~i~~sW~~~L~~e~~k~yf~~L~~fl~~e~~~~~---------~~I~P~~~~IF~af~~t-p~~~VKVVILGQDPYh~pg 176 (222)
++++-|+..|. |.-.-+.+ |........ ....-+.-.-=.|.+.+ .++||||||| .||.+|..
T Consensus 962 lfPe~WRpAL~--FDPeALA~----IAAr~~~p~~~~~~~~g~l~as~pLRRr~AWMrQi~dPEDVrVVVL-Y~PLPGE~ 1034 (1352)
T PHA03307 962 LFPEPWRPALA--FDPEALAE----IAARCGGPPPRSGSAFGPLRASGPLRRRAAWMRQIPDPEDVRVVVL-YSPLPGEH 1034 (1352)
T ss_pred cCCcccchhhc--cCHHHHHH----HHHhccCCCcccccccCCccccHHHHHHHHHHhcCCChhheeEEEE-ecCCCchh
Confidence 46788999996 33333333 343331100 00111222233466654 6999999999 56666654
Q ss_pred CC---------ceeecccCCCCCCCccHHHHHHHHHhcc
Q 047176 177 QA---------MGLSFSVPEGVKIPSSLANIFKEIHQDV 206 (222)
Q Consensus 177 qA---------~GLAFSV~~~v~iPpSLrNIyKEL~~D~ 206 (222)
-+ .|..||-.+|- |--+.-.|.+-|
T Consensus 1035 L~~~p~~~~~~~~P~ws~~RGG-----LS~LLAAL~NRL 1068 (1352)
T PHA03307 1035 LFGVPAPDASPGGPAWSPERGG-----LSFLLAALGNRL 1068 (1352)
T ss_pred hcCCCCCCCCCCCCCCCcccCc-----HHHHHHHHhccc
Confidence 43 34556655542 444455555543
No 19
>PF11502 BCL9: B-cell lymphoma 9 protein; InterPro: IPR024670 The Wnt pathway plays a role in embryonic development, stem cell growth and tumorigenesis. B-cell lymphoma 9 (BCL9) associates with beta-catenin and Tcf in the nucleus when the Wnt pathway is stimulated leading to the transactivation of Wnt target genes []. This entry represents a beta-catenin binding domain found in BCL9 and BCL9 homologues.; PDB: 3SL9_F 2GL7_C.
Probab=22.37 E-value=1.1e+02 Score=20.59 Aligned_cols=22 Identities=27% Similarity=0.282 Sum_probs=14.4
Q ss_pred CCCHHHHhHHHHhHHHHHhHhhHh
Q 047176 61 SLTAEQQSRIEFNRYVAKSKRNLK 84 (222)
Q Consensus 61 ~ls~eq~~r~~~nk~~A~~kr~~~ 84 (222)
+||+||+.+.|+. +|.+|.--+
T Consensus 1 ~LtpeQ~qHRE~q--L~tlr~mq~ 22 (40)
T PF11502_consen 1 NLTPEQRQHRERQ--LATLRDMQR 22 (40)
T ss_dssp ---HHHHHHHHHH--HHHHHHHHH
T ss_pred CCCHHHHHHHHHH--HHHHHHHHH
Confidence 4899999998876 777775444
Done!