Query 047176
Match_columns 222
No_of_seqs 211 out of 1122
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 14:42:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047176.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047176hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tr7_A UDG, uracil-DNA glycosy 100.0 5.2E-50 1.8E-54 351.0 8.8 115 107-222 8-122 (232)
2 3fci_A UDG, uracil-DNA glycosy 100.0 1.7E-49 5.7E-54 346.2 10.5 113 108-222 4-117 (223)
3 3uf7_A UDG, uracil-DNA glycosy 100.0 2.7E-48 9.1E-53 340.9 10.4 113 109-222 4-117 (237)
4 3cxm_A Uracil-DNA glycosylase; 100.0 3.9E-48 1.3E-52 345.0 11.4 121 101-222 29-154 (268)
5 2boo_A UDG, uracil-DNA glycosy 100.0 2.4E-48 8.1E-53 343.1 9.8 114 107-222 22-136 (247)
6 1udg_A Uracil-DNA glycosylase; 100.0 2.4E-48 8.3E-53 342.6 9.6 114 107-222 27-141 (244)
7 2j8x_A Uracil-DNA glycosylase; 100.0 3.2E-48 1.1E-52 339.6 9.3 114 106-222 4-119 (231)
8 3a7n_A UDG, uracil-DNA glycosy 100.0 4.8E-47 1.6E-51 333.4 10.0 112 107-222 20-132 (238)
9 2owr_A UDG, uracil-DNA glycosy 100.0 1.6E-41 5.3E-46 295.1 5.7 101 107-222 14-114 (218)
10 1oe4_A SMUG1, single-strand se 32.4 9.5 0.00032 33.3 0.0 25 160-184 52-76 (247)
11 1zdn_A Ubiquitin-conjugating e 25.8 1.5E+02 0.005 23.2 6.0 44 141-195 33-79 (158)
12 2h2y_A Ubiquitin-conjugating e 25.6 1.2E+02 0.0042 23.2 5.4 44 141-195 40-86 (136)
13 2a7l_A Hypothetical ubiquitin- 23.3 1.3E+02 0.0043 23.3 5.1 33 161-195 55-90 (136)
14 1mai_A Phospholipase C delta-1 23.3 19 0.00067 27.3 0.3 32 156-188 57-93 (131)
15 1o6d_A Hypothetical UPF0247 pr 22.7 15 0.00051 30.1 -0.5 23 147-179 136-158 (163)
16 3t49_A SCIN-B, fibrinogen-bind 20.9 38 0.0013 24.5 1.4 19 62-80 26-44 (73)
17 4ds2_A Ubiquitin-conjugating e 20.2 75 0.0026 25.2 3.2 24 141-173 40-65 (167)
18 2c2v_B Ubiquitin-conjugating e 20.2 1.7E+02 0.006 22.7 5.4 45 140-195 24-71 (154)
No 1
>3tr7_A UDG, uracil-DNA glycosylase; DNA metabolism, hydrolase; 2.20A {Coxiella burnetii}
Probab=100.00 E-value=5.2e-50 Score=351.04 Aligned_cols=115 Identities=57% Similarity=0.956 Sum_probs=109.4
Q ss_pred cccccHHHHhhhhhChHHHHHHHHHHHHHHhcCCCeeeCCcchhhhhhhcCCCCCeEEEEEcCCCCCCCCCCceeecccC
Q 047176 107 LAEETWLEVLHGELQKPYAKRLCEFVEKEIKDSGVDIFPPQHLIFNALNTTPFDRVKAVIIGQDPYHGPGQAMGLSFSVP 186 (222)
Q Consensus 107 ~i~~sW~~~L~~e~~k~yf~~L~~fl~~e~~~~~~~I~P~~~~IF~af~~tp~~~VKVVILGQDPYh~pgqA~GLAFSV~ 186 (222)
.++++|+++|.+|+.++||++|.+||.+|++.+ .+|||+.++||+||++||+++||||||||||||++||||||||||+
T Consensus 8 ~~~~~W~~~L~~e~~k~yf~~l~~fl~~e~~~g-~~i~P~~~~iF~af~~tp~~~VKVVIlGQDPYh~~gqA~GLaFSV~ 86 (232)
T 3tr7_A 8 AETQTWQTVLGEEKQEPYFQEILDFVKKERKAG-KIIYPPQKDIFNALKLTPYEAIKVVILGQDPYHGPNQAHGLAFSVR 86 (232)
T ss_dssp --CCCHHHHSHHHHHSHHHHHHHHHHHHHHHTT-CCEESCGGGTTHHHHHSCGGGCCEEEEESSCCCSTTTCSSSSSCCC
T ss_pred CCChhHHHHHHHHhccHHHHHHHHHHHHHHHcC-CEEeCCHHHHHHHHhcCCccceEEEEEecCCCCCCCCeEEEEEecC
Confidence 457899999999999999999999999999765 4599999999999999999999999999999999999999999999
Q ss_pred CCCCCCccHHHHHHHHHhccCCCCCCCCCccccccC
Q 047176 187 EGVKIPSSLANIFKEIHQDVGCRLPSHGNLEKWAVQ 222 (222)
Q Consensus 187 ~~v~iPpSLrNIyKEL~~D~g~~~p~hGdL~~WAkQ 222 (222)
+++++||||+||||||.+|+|+..|.||||++||+|
T Consensus 87 ~~v~~PpSL~NI~kEL~~d~g~~~p~~G~L~~WA~Q 122 (232)
T 3tr7_A 87 PGVPAPPSLQNIFKELHADLGVSIPSHGFLEKWAKQ 122 (232)
T ss_dssp TTSCCCHHHHHHHHHHHHHHCCCCCSSCCCHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHhhCCCCCCCCCcHhHHhC
Confidence 999999999999999999999999999999999997
No 2
>3fci_A UDG, uracil-DNA glycosylase; DNA repair, alternative splicing, disease mutation, DNA damage, glycosidase, HOST- virus interaction, hydrolase; HET: 3FI; 1.27A {Homo sapiens} PDB: 1emh_A* 1emj_A* 1q3f_A* 1ssp_E* 1ugh_E 1akz_A* 2oxm_A* 2oyt_A* 3fcf_A* 2hxm_A* 3fck_B* 3fcl_A* 2ssp_E* 1yuo_A 3tkb_A 4skn_E* 1okb_A
Probab=100.00 E-value=1.7e-49 Score=346.15 Aligned_cols=113 Identities=46% Similarity=0.803 Sum_probs=109.1
Q ss_pred ccccHHHHhhhhhChHHHHHHHHHHHHHHhcCCCeeeCCcchhhhhhhcCCCCCeEEEEEcCCCCCCCCCCceeecccCC
Q 047176 108 AEETWLEVLHGELQKPYAKRLCEFVEKEIKDSGVDIFPPQHLIFNALNTTPFDRVKAVIIGQDPYHGPGQAMGLSFSVPE 187 (222)
Q Consensus 108 i~~sW~~~L~~e~~k~yf~~L~~fl~~e~~~~~~~I~P~~~~IF~af~~tp~~~VKVVILGQDPYh~pgqA~GLAFSV~~ 187 (222)
++++|+++|.+|+.++||++|.+||.+|++. .+|||+.++||+||++||+++||||||||||||++||||||||||++
T Consensus 4 ~~~~W~~~L~~e~~~~y~~~l~~fl~~e~~~--~~i~P~~~~iF~a~~~tp~~~vKVVIlGQDPYh~~gqA~GLaFSV~~ 81 (223)
T 3fci_A 4 FGESWKKHLSGEFGKPYFIKLMGFVAEERKH--YTVYPPPHQVFTWTQMCDIKDVKVVILGQDPYHGPNQAHGLCFSVQR 81 (223)
T ss_dssp SCHHHHHHHGGGTTSHHHHHHHHHHHHHHHH--SCEESCGGGTTGGGTSSCGGGCCEEEEECSCCCSTTTCCSSTTCCCT
T ss_pred cCHHHHHHHHHHhccHHHHHHHHHHHHHHhC--CcccCCHHHHHHHHhccCccceEEEEEecCCCcCCCCceeEeEecCC
Confidence 5789999999999999999999999999864 36999999999999999999999999999999999999999999999
Q ss_pred CCCCCccHHHHHHHHHhcc-CCCCCCCCCccccccC
Q 047176 188 GVKIPSSLANIFKEIHQDV-GCRLPSHGNLEKWAVQ 222 (222)
Q Consensus 188 ~v~iPpSLrNIyKEL~~D~-g~~~p~hGdL~~WAkQ 222 (222)
++++||||+||||||.+|| |+..|.||||++||+|
T Consensus 82 ~v~~PpSL~NI~kEL~~dl~g~~~p~~G~L~~WA~Q 117 (223)
T 3fci_A 82 PVPPPPSLENIYKELSTDIEDFVHPGHGDLSGWAKQ 117 (223)
T ss_dssp TSCCCHHHHHHHHHHHHHSTTCCCCSSCCTHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHhccCCCCCCCccchhHHhC
Confidence 9999999999999999999 8999999999999998
No 3
>3uf7_A UDG, uracil-DNA glycosylase; glycosylase, SSB C-terminal, base excision repair, hydrolase; HET: SO4; 1.20A {Escherichia coli} PDB: 1uug_A 1lqj_A 1lqm_A 1lqg_A 2uug_A 1eui_A 1eug_A 4eug_A 5eug_A 3eug_A 2eug_A 1flz_A 2jhq_A
Probab=100.00 E-value=2.7e-48 Score=340.95 Aligned_cols=113 Identities=50% Similarity=0.835 Sum_probs=108.2
Q ss_pred cccHHHHhhhhhChHHHHHHHHHHHHHHhcCCCeeeCCcchhhhhhhcCCCCCeEEEEEcCCCCCCCCCCceeecccCCC
Q 047176 109 EETWLEVLHGELQKPYAKRLCEFVEKEIKDSGVDIFPPQHLIFNALNTTPFDRVKAVIIGQDPYHGPGQAMGLSFSVPEG 188 (222)
Q Consensus 109 ~~sW~~~L~~e~~k~yf~~L~~fl~~e~~~~~~~I~P~~~~IF~af~~tp~~~VKVVILGQDPYh~pgqA~GLAFSV~~~ 188 (222)
..+|+++|.+|+.++||++|.+||.+|++.+ .+|||+.++||+||++||+++||||||||||||++||||||||||+++
T Consensus 4 ~~SW~~~L~~e~~k~yf~~l~~fl~~e~~~~-~~iyP~~~~iF~af~~~p~~~vKVVIlGQDPYh~~gqA~GLaFSV~~~ 82 (237)
T 3uf7_A 4 ELTWHDVLAEEKQQPYFLNTLQTVASERQSG-VTIYPPQKDVFNAFRFTELGDVKVVILGQDPYHGPGQAHGLAFSVRPG 82 (237)
T ss_dssp CCCHHHHHTTGGGSHHHHHHHHHHHHHHHHT-CCEESCGGGTTHHHHHSCGGGCCEEEEESSCCCSTTTCCSSSSCCCTT
T ss_pred cccHHHHHHHHhcCHHHHHHHHHHHHHHHcC-CeecCChHHHHHHHhccCccceEEEEEecCCCCCCCcccceeeecCCC
Confidence 4589999999999999999999999999765 469999999999999999999999999999999999999999999999
Q ss_pred CCCCccHHHHHHHHHhccC-CCCCCCCCccccccC
Q 047176 189 VKIPSSLANIFKEIHQDVG-CRLPSHGNLEKWAVQ 222 (222)
Q Consensus 189 v~iPpSLrNIyKEL~~D~g-~~~p~hGdL~~WAkQ 222 (222)
+++||||+||||||.+|+| +..|.||||+.||+|
T Consensus 83 ~~~PpSL~NI~kEl~~d~~~~~~p~~G~L~~WA~Q 117 (237)
T 3uf7_A 83 IAIPPSLLNMYKELENTIPGFTRPNHGYLESWARQ 117 (237)
T ss_dssp SCCCHHHHHHHHHHHHHSTTCCCCSCCCCHHHHTT
T ss_pred CCCchHHHHHHHHHHHhcCCCCCCCCcchHhHHhC
Confidence 9999999999999999994 889999999999998
No 4
>3cxm_A Uracil-DNA glycosylase; base excision repair, BER, DNA damage repair, MS SGPP, hydrolase, 5-bromouracil; 1.50A {Leishmania naiffi}
Probab=100.00 E-value=3.9e-48 Score=344.95 Aligned_cols=121 Identities=40% Similarity=0.683 Sum_probs=113.5
Q ss_pred cchhhccccccHHHHhhhhhC----hHHHHHHHHHHHHHHhcCCCeeeCCcchhhhhhhcCCCCCeEEEEEcCCCCCCCC
Q 047176 101 VKLEELLAEETWLEVLHGELQ----KPYAKRLCEFVEKEIKDSGVDIFPPQHLIFNALNTTPFDRVKAVIIGQDPYHGPG 176 (222)
Q Consensus 101 ~~l~~~~i~~sW~~~L~~e~~----k~yf~~L~~fl~~e~~~~~~~I~P~~~~IF~af~~tp~~~VKVVILGQDPYh~pg 176 (222)
.++..+.++++|+++|.+|+. ++||++|.+||.+|+..+ .+|||+.++||+||++||+++||||||||||||++|
T Consensus 29 ~~~~~~~i~~~W~~~L~~e~~~~~~k~y~~~l~~fl~~e~~~~-~~i~P~~~~iF~Af~~tp~~~VKVVIlGQDPYh~pg 107 (268)
T 3cxm_A 29 RWLAGLITNPEWRDFLAPITADSWRKGAFIRIERFLDEEKEKG-RVILPPAADIFNAFNSCPFRGLKVVLLGQDPYHDLH 107 (268)
T ss_dssp SSTGGGCCCHHHHHHHHHHHSTTTTTTHHHHHHHHHHHHHHTT-CCEESCGGGTTHHHHTSCSTTCCEEEEESSCCCSTT
T ss_pred cchhhcccChhHHHHHHHHHhcccccHHHHHHHHHHHHHHHcC-CeecCCchhhhHhhhcCCHhHeEEEEEeCCCCcCCC
Confidence 445566678999999999999 999999999999995444 469999999999999999999999999999999999
Q ss_pred CCceeecccCCCCCCCccHHHHHHHHHhcc-CCCCCCCCCccccccC
Q 047176 177 QAMGLSFSVPEGVKIPSSLANIFKEIHQDV-GCRLPSHGNLEKWAVQ 222 (222)
Q Consensus 177 qA~GLAFSV~~~v~iPpSLrNIyKEL~~D~-g~~~p~hGdL~~WAkQ 222 (222)
|||||||||++++++||||+||||||.+|| |+..|.||||++||+|
T Consensus 108 qA~GLaFSV~~gv~~PpSL~NIyKEL~~Dlpg~~~p~~G~L~~WA~Q 154 (268)
T 3cxm_A 108 QAHGLCFSVLPEVPLPPSLRNIYKELTTDIAGFQAPKHGYLQSWSEQ 154 (268)
T ss_dssp TCCSSTTCCCTTSCCCHHHHHHHHHHHHHSTTCCCCSSCCCHHHHTT
T ss_pred CeeeECcccCCCCchhHHHHHHHHHHHhhccCCCCCCCCCcHHHHhc
Confidence 999999999999999999999999999999 9999999999999998
No 5
>2boo_A UDG, uracil-DNA glycosylase; base excision repair, radiation resistance, DNA damage, DNA glycosidase, hydrolase; 1.80A {Deinococcus radiodurans}
Probab=100.00 E-value=2.4e-48 Score=343.13 Aligned_cols=114 Identities=50% Similarity=0.894 Sum_probs=109.9
Q ss_pred cccccHHHHhhhhhChHHHHHHHHHHHHHHhcCCCeeeCCcchhhhhhhcCCCCCeEEEEEcCCCCCCCCCCceeecccC
Q 047176 107 LAEETWLEVLHGELQKPYAKRLCEFVEKEIKDSGVDIFPPQHLIFNALNTTPFDRVKAVIIGQDPYHGPGQAMGLSFSVP 186 (222)
Q Consensus 107 ~i~~sW~~~L~~e~~k~yf~~L~~fl~~e~~~~~~~I~P~~~~IF~af~~tp~~~VKVVILGQDPYh~pgqA~GLAFSV~ 186 (222)
.++++|+++|..|+.++||++|.+||.+|++. .+|||+.++||+||++||+++||||||||||||++||||||||||+
T Consensus 22 ~l~~~W~~~L~~e~~~~y~~~l~~fl~~e~~~--~~i~P~~~~iF~af~~tp~~~VKVVIlGQDPYh~pgqA~GLaFSV~ 99 (247)
T 2boo_A 22 NLPEDWQEALLPEFSAPYFHELTDFLRQERKE--YTIYPPAPDVFNALRYTPLGEVKVLILGQDPYHGPNQAHGLSFSVR 99 (247)
T ss_dssp TCCHHHHHHHHHHHTSHHHHHHHHHHHHHHHH--SCEESCGGGTTHHHHHSCGGGCCEEEEESSCCCSTTCCSSSSSCCC
T ss_pred ccChhHHHHHHhHhccHHHHHHHHHHHHHHhC--CccCCCHHHHHHHHhcCCHhHeEEEEEeCCCCcCCCCeeEEeeeCC
Confidence 46889999999999999999999999999865 3699999999999999999999999999999999999999999999
Q ss_pred CCCCCCccHHHHHHHHHhcc-CCCCCCCCCccccccC
Q 047176 187 EGVKIPSSLANIFKEIHQDV-GCRLPSHGNLEKWAVQ 222 (222)
Q Consensus 187 ~~v~iPpSLrNIyKEL~~D~-g~~~p~hGdL~~WAkQ 222 (222)
+++++||||+||||||.+|+ |+..|.||||++||+|
T Consensus 100 ~gv~~PpSL~NI~kEL~~Dl~g~~~p~~G~L~~WA~Q 136 (247)
T 2boo_A 100 PGVRVPPSLRNIYKELTEDIPGFVAPKHGYLRSWAEQ 136 (247)
T ss_dssp TTSCCCHHHHHHHHHHHHHSTTCCCCSSCCCHHHHTT
T ss_pred CCCCccHHHHHHHHHHHHhccCCCCCCCCCcHHHHhc
Confidence 99999999999999999999 9999999999999998
No 6
>1udg_A Uracil-DNA glycosylase; hydrolase; 1.75A {Herpes simplex virus} SCOP: c.18.1.1 PDB: 1lau_E 1udh_A 1udi_E 2c53_A* 2c56_A*
Probab=100.00 E-value=2.4e-48 Score=342.61 Aligned_cols=114 Identities=37% Similarity=0.667 Sum_probs=109.5
Q ss_pred cccccHHHHhhhhhChHHHHHHHHHHHHHHhcCCCeeeCCcchhhhhhhcCCCCCeEEEEEcCCCCCCCCCCceeecccC
Q 047176 107 LAEETWLEVLHGELQKPYAKRLCEFVEKEIKDSGVDIFPPQHLIFNALNTTPFDRVKAVIIGQDPYHGPGQAMGLSFSVP 186 (222)
Q Consensus 107 ~i~~sW~~~L~~e~~k~yf~~L~~fl~~e~~~~~~~I~P~~~~IF~af~~tp~~~VKVVILGQDPYh~pgqA~GLAFSV~ 186 (222)
.++++|+++|..|+.++||++|.+||.+|++. .+|||+.++||+||++||+++||||||||||||++||||||||||+
T Consensus 27 ~~~~~W~~~L~~e~~~~y~~~l~~~l~~e~~~--~~i~P~~~~iF~af~~tp~~~VKVVIlGQDPYh~~gqA~GLaFSV~ 104 (244)
T 1udg_A 27 LIDDAWRPLMEPELANPLTAHLLAEYNRRCQT--EEVLPPREDVFSWTRYCTPDEVRVVIIGQDPYHHPGQAHGLAFSVR 104 (244)
T ss_dssp TCCGGGHHHHHHHHTSHHHHHHHHHHHHHHHH--SCEESCTTTTTTHHHHSCGGGCCEEEEECSCCCSTTTCSSSSSCCC
T ss_pred cCCccHHHHHHhhhccHHHHHHHHHHHHHHhC--CccCCCcchhhHhhhcCCccceEEEEecCCCCCCCCCeeeeeeecC
Confidence 35789999999999999999999999999865 3699999999999999999999999999999999999999999999
Q ss_pred CCCCCCccHHHHHHHHHhcc-CCCCCCCCCccccccC
Q 047176 187 EGVKIPSSLANIFKEIHQDV-GCRLPSHGNLEKWAVQ 222 (222)
Q Consensus 187 ~~v~iPpSLrNIyKEL~~D~-g~~~p~hGdL~~WAkQ 222 (222)
+++++||||+||||||.+|+ |+..|.||||++||+|
T Consensus 105 ~gv~~PpSL~NI~kEL~~d~pg~~~p~~G~L~~WA~Q 141 (244)
T 1udg_A 105 ANVPPPPSLRNVLAAVKNCYPEARMSGHGCLEKWARD 141 (244)
T ss_dssp TTSCCCHHHHHHHHHHHHHCTTCCCCSCCCCHHHHHT
T ss_pred CCCCccHHHHHHHHHHHhhcCCCCCCCCCChHHHHhc
Confidence 99999999999999999999 9999999999999998
No 7
>2j8x_A Uracil-DNA glycosylase; hydrolase-inhibitor complex, hydrolase/inhibitor complex, EB repair, lytic protein, epstein-BARR virus; 2.3A {Epstein-barr virus} SCOP: c.18.1.1
Probab=100.00 E-value=3.2e-48 Score=339.58 Aligned_cols=114 Identities=35% Similarity=0.637 Sum_probs=109.2
Q ss_pred ccccccHHHHhhh-hhChHHHHHHHHHHHHHHhcCCCeeeCCcchhhhhhhcCCCCCeEEEEEcCCCCCCCCCCceeecc
Q 047176 106 LLAEETWLEVLHG-ELQKPYAKRLCEFVEKEIKDSGVDIFPPQHLIFNALNTTPFDRVKAVIIGQDPYHGPGQAMGLSFS 184 (222)
Q Consensus 106 ~~i~~sW~~~L~~-e~~k~yf~~L~~fl~~e~~~~~~~I~P~~~~IF~af~~tp~~~VKVVILGQDPYh~pgqA~GLAFS 184 (222)
+.++++|+++|.+ |+.++||++|.+||.+|++. .+|||+.++||+||++||+++||||||||||||+ |||||||||
T Consensus 4 ~~l~~~W~~~L~~~e~~~~y~~~l~~fl~~e~~~--~~i~P~~~~if~af~~tp~~~VKVVIlGQDPYh~-gqA~GLaFS 80 (231)
T 2j8x_A 4 LLLPDLWLDFLQLSPIFQRKLAAVIACVRRLRTQ--ATVYPEEDMCMAWARFCDPSDIKVVILGQDPYHG-GQANGLAFS 80 (231)
T ss_dssp CCCCHHHHHHHTCCHHHHHHHHHHHHHHHHHHTT--SCEESCTTTTTGGGSSSCGGGCCEEEEECSCCSS-SCCCSSSSC
T ss_pred CcCCccHHHHHcchhhCcHHHHHHHHHHHHHHhc--CccCCCchhhhHhhhCCCHHHeEEEEEecCCCCC-CCeeeEeee
Confidence 3468899999999 99999999999999999864 4699999999999999999999999999999999 999999999
Q ss_pred cCCCCCCCccHHHHHHHHHhcc-CCCCCCCCCccccccC
Q 047176 185 VPEGVKIPSSLANIFKEIHQDV-GCRLPSHGNLEKWAVQ 222 (222)
Q Consensus 185 V~~~v~iPpSLrNIyKEL~~D~-g~~~p~hGdL~~WAkQ 222 (222)
|++++++||||+||||||.+|+ |+..|.||||++||+|
T Consensus 81 v~~~v~~PpSL~NI~kEL~~dl~g~~~p~~G~L~~WA~Q 119 (231)
T 2j8x_A 81 VAYGFPVPPSLRNIYAELHRSLPEFSPPDHGCLDAWASQ 119 (231)
T ss_dssp CCTTSCCCHHHHHHHHHHHHHCTTCCCCSSCCCHHHHTT
T ss_pred cCCCCCcchHHHHHHHHHHHhcCCCCCCCCCCchhHHhc
Confidence 9999999999999999999999 9999999999999998
No 8
>3a7n_A UDG, uracil-DNA glycosylase; UNG-UGI interactions, UNG-DNA complex, citrate AS protein LI ligand binding, inhibitor design; HET: FLC; 1.95A {Mycobacterium tuberculosis H37RV} PDB: 2zhx_A*
Probab=100.00 E-value=4.8e-47 Score=333.36 Aligned_cols=112 Identities=41% Similarity=0.734 Sum_probs=106.8
Q ss_pred cccccHHHHhhhhhChHHHHHHHHHHHHHHhcCCCeeeCCcchhhhhhhcCCCCCeEEEEEcCCCCCCCCCCceeeccc-
Q 047176 107 LAEETWLEVLHGELQKPYAKRLCEFVEKEIKDSGVDIFPPQHLIFNALNTTPFDRVKAVIIGQDPYHGPGQAMGLSFSV- 185 (222)
Q Consensus 107 ~i~~sW~~~L~~e~~k~yf~~L~~fl~~e~~~~~~~I~P~~~~IF~af~~tp~~~VKVVILGQDPYh~pgqA~GLAFSV- 185 (222)
.++++|+++|.+ .++||.+|.+||.+|++++ .+|||+.++||+||+ ||+++||||||||||||++||||||||||
T Consensus 20 ~i~~~W~~~L~~--~~~y~~~l~~fl~~e~~~~-~~i~P~~~~iF~af~-tp~~~VKVVIlGQDPYh~~gqA~GLaFSV~ 95 (238)
T 3a7n_A 20 LVERGWAAALEP--VADQVAHMGQFLRAEIAAG-RRYLPAGSNVLRAFT-FPFDNVRVLIVGQDPYPTPGHAVGLSFSVA 95 (238)
T ss_dssp TSCHHHHHHTGG--GHHHHHHHHHHHHHHHHTT-CCCBSCGGGTTGGGS-SCGGGCCEEEEESSCCSSTTTCCSSTTCCC
T ss_pred hhchhHHHHHHh--ccHHHHHHHHHHHHHHHcC-CeeCCCHHHHHHHhc-CCHHHeEEEEEeCCCCCCCCCeeeEEEEec
Confidence 357899999999 8999999999999999654 469999999999999 99999999999999999999999999999
Q ss_pred CCCCCCCccHHHHHHHHHhccCCCCCCCCCccccccC
Q 047176 186 PEGVKIPSSLANIFKEIHQDVGCRLPSHGNLEKWAVQ 222 (222)
Q Consensus 186 ~~~v~iPpSLrNIyKEL~~D~g~~~p~hGdL~~WAkQ 222 (222)
++++++||||+||||||.+|||+..|.||||++||+|
T Consensus 96 ~~~v~~PpSL~NI~kEL~~d~g~~~p~~G~L~~WA~Q 132 (238)
T 3a7n_A 96 PDVRPWPRSLANIFDEYTADLGYPLPSNGDLTPWAQR 132 (238)
T ss_dssp TTCSSCCHHHHHHHHHHHHHHCCCCCSSCCCHHHHHT
T ss_pred CCCCCccHHHHHHHHHHHHhcCCCCCCCCChHHHHhc
Confidence 9999999999999999999999999999999999998
No 9
>2owr_A UDG, uracil-DNA glycosylase; uracil-DNA glycosylase fold in the core: 3 layers (A/B/A); HET: EPE; 2.30A {Vaccinia virus} PDB: 2owq_A 3nt7_C
Probab=100.00 E-value=1.6e-41 Score=295.14 Aligned_cols=101 Identities=20% Similarity=0.328 Sum_probs=96.1
Q ss_pred cccccHHHHhhhhhChHHHHHHHHHHHHHHhcCCCeeeCCcchhhhhhhcCCCCCeEEEEEcCCCCCCCCCCceeecccC
Q 047176 107 LAEETWLEVLHGELQKPYAKRLCEFVEKEIKDSGVDIFPPQHLIFNALNTTPFDRVKAVIIGQDPYHGPGQAMGLSFSVP 186 (222)
Q Consensus 107 ~i~~sW~~~L~~e~~k~yf~~L~~fl~~e~~~~~~~I~P~~~~IF~af~~tp~~~VKVVILGQDPYh~pgqA~GLAFSV~ 186 (222)
.++++|+++|.+| .++| ++|.+||.+|+ |||+.++||+|| +||+++||||||||||||+ |||||||||+
T Consensus 14 ~~~~~W~~~L~~e-~~~y-~~l~~fl~~e~------i~P~~~~if~af-~tp~~~VKVVIlGQDPYh~--qA~GLaFSV~ 82 (218)
T 2owr_A 14 TYHNDWEPVMSQL-VEFY-NEVASWLLRDE------TSPIPDKFFIQL-KQPLRNKRVCVCGIDPYPK--DGTGVPFESP 82 (218)
T ss_dssp EEEGGGHHHHHHH-HHHH-HTTHHHHTTSC------EESCGGGTTGGG-GSCSTTCCEEEEESSCCSS--CCCSSTTCCT
T ss_pred ccCcChHHHhccc-ccHH-HHHHHHHHhce------eCCCHHHHHHhh-cCCHHHeEEEEEecCCCCC--CcceEEEEec
Confidence 3578999999999 9999 99999997653 999999999999 9999999999999999999 9999999999
Q ss_pred CCCCCCccHHHHHHHHHhccCCCCCCCCCccccccC
Q 047176 187 EGVKIPSSLANIFKEIHQDVGCRLPSHGNLEKWAVQ 222 (222)
Q Consensus 187 ~~v~iPpSLrNIyKEL~~D~g~~~p~hGdL~~WAkQ 222 (222)
+++ ||||+||||||.+|+|+..|.||||+ |+|
T Consensus 83 ~gv--PpSL~NI~kEL~~d~g~~~p~~G~L~--A~Q 114 (218)
T 2owr_A 83 NFT--KKSIKEIASSISRLTGVIDYKGYNLN--IID 114 (218)
T ss_dssp TSC--CHHHHHHHHHHHHHHCCCCCSEECGG--GST
T ss_pred CCC--chHHHHHHHHHHHhhCCCCCCCCcee--ecc
Confidence 998 99999999999999999999999999 987
No 10
>1oe4_A SMUG1, single-strand selective monofunctional uracil DNA glycosylase; hydrolase, hydrolase/complex, SMUG1; HET: 3DR; 2.0A {Xenopus laevis} SCOP: c.18.1.3 PDB: 1oe5_A* 1oe6_A*
Probab=32.45 E-value=9.5 Score=33.32 Aligned_cols=25 Identities=16% Similarity=0.316 Sum_probs=20.2
Q ss_pred CCeEEEEEcCCCCCCCCCCceeecc
Q 047176 160 DRVKAVIIGQDPYHGPGQAMGLSFS 184 (222)
Q Consensus 160 ~~VKVVILGQDPYh~pgqA~GLAFS 184 (222)
+..||+||||+|=..-.+..|+.|-
T Consensus 52 ~~~riliiG~aPG~~G~~~TGvPF~ 76 (247)
T 1oe4_A 52 SKKEVLFLGMNPGPFGMAQTGVPFG 76 (247)
T ss_dssp SCCSEEEEESSCCTTTHHHHSSTTC
T ss_pred CCCCEEEEecCCCcccCcccCCCCC
Confidence 4899999999997764556799884
No 11
>1zdn_A Ubiquitin-conjugating enzyme E2S; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC; 1.93A {Homo sapiens} SCOP: d.20.1.1
Probab=25.84 E-value=1.5e+02 Score=23.21 Aligned_cols=44 Identities=18% Similarity=0.451 Sum_probs=24.7
Q ss_pred CeeeCCcchhhhhhhcCCCCCeEEEEEcCC--CCCCCCCCceeecccCCCCC-CCccH
Q 047176 141 VDIFPPQHLIFNALNTTPFDRVKAVIIGQD--PYHGPGQAMGLSFSVPEGVK-IPSSL 195 (222)
Q Consensus 141 ~~I~P~~~~IF~af~~tp~~~VKVVILGQD--PYh~pgqA~GLAFSV~~~v~-iPpSL 195 (222)
+.+.|..+++|. .+|+|.|-+ ||.|- . --|.+..+.+++ .||..
T Consensus 33 i~~~~~~~~l~~---------w~~~i~Gp~~tpyegg-~-f~~~i~fp~~YP~~PP~v 79 (158)
T 1zdn_A 33 IKVFPNEEDLTD---------LQVTIEGPEGTPYAGG-L-FRMKLLLGKDFPASPPKG 79 (158)
T ss_dssp EEEEECSSCTTE---------EEEEEECCTTSTTTTC-E-EEEEEECCTTTTTSCCEE
T ss_pred EEEEECCCChhh---------eeEEEECCCCCCccCc-E-EEEEEEcCCCCCCCCCEE
Confidence 456666665555 478999854 77752 1 123334456555 35543
No 12
>2h2y_A Ubiquitin-conjugating enzyme; structural genomics, unknown function, structural genomics consortium, SGC; 2.80A {Plasmodium falciparum 3D7}
Probab=25.56 E-value=1.2e+02 Score=23.16 Aligned_cols=44 Identities=14% Similarity=0.104 Sum_probs=25.6
Q ss_pred CeeeCCcchhhhhhhcCCCCCeEEEEEcCC--CCCCCCCCceeecccCCCCC-CCccH
Q 047176 141 VDIFPPQHLIFNALNTTPFDRVKAVIIGQD--PYHGPGQAMGLSFSVPEGVK-IPSSL 195 (222)
Q Consensus 141 ~~I~P~~~~IF~af~~tp~~~VKVVILGQD--PYh~pgqA~GLAFSV~~~v~-iPpSL 195 (222)
+.+.|..+++|. -+|+|.|-+ ||.| |. --|.+..+.+++ -||..
T Consensus 40 ~~~~~~~~nl~~---------W~~~I~GP~~tpYeg-g~-f~~~i~fp~~YP~~PP~v 86 (136)
T 2h2y_A 40 CTIDVHPSNIRI---------WIVQYVGLENTIYAN-EV-YKIKIIFPDNYPLKPPIV 86 (136)
T ss_dssp EEEEECTTCTTE---------EEEEEECCTTSTTTT-CE-EEEEEECCTTTTTSCCEE
T ss_pred eEEEeccccccc---------cEEEEECCCCCceeC-CE-EEEEEEeCCCCCCCCCEE
Confidence 345565555555 478999954 7765 21 223445567766 46654
No 13
>2a7l_A Hypothetical ubiquitin-conjugating enzyme LOC55284; structural genomics consortium, (SGC), ligase; 1.82A {Homo sapiens} SCOP: d.20.1.1
Probab=23.34 E-value=1.3e+02 Score=23.30 Aligned_cols=33 Identities=15% Similarity=0.181 Sum_probs=19.7
Q ss_pred CeEEEEEcCC--CCCCCCCCceeecccCCCCC-CCccH
Q 047176 161 RVKAVIIGQD--PYHGPGQAMGLSFSVPEGVK-IPSSL 195 (222)
Q Consensus 161 ~VKVVILGQD--PYh~pgqA~GLAFSV~~~v~-iPpSL 195 (222)
..+|+|.|-+ ||.|- .--|.+..+++++ -||..
T Consensus 55 ~W~~~I~GP~~TpYegG--~f~l~i~fp~~YP~~PP~v 90 (136)
T 2a7l_A 55 QWIVDMEGAPGTLYEGE--KFQLLFKFSSRYPFDSPQV 90 (136)
T ss_dssp EEEEEEECCTTSTTTTC--EEEEEEEECTTTTTSCCEE
T ss_pred eeEEEEECCCCCccccE--EEEEEEECCCCCCCCCCEE
Confidence 3489999954 78652 1224445677776 46654
No 14
>1mai_A Phospholipase C delta-1; pleckstrin, inositol trisphosphate, signal transduction protein, hydrolase; HET: I3P; 1.90A {Rattus norvegicus} SCOP: b.55.1.1
Probab=23.29 E-value=19 Score=27.34 Aligned_cols=32 Identities=13% Similarity=0.203 Sum_probs=21.7
Q ss_pred cCCCCCeEEEEEcCCC-----CCCCCCCceeecccCCC
Q 047176 156 TTPFDRVKAVIIGQDP-----YHGPGQAMGLSFSVPEG 188 (222)
Q Consensus 156 ~tp~~~VKVVILGQDP-----Yh~pgqA~GLAFSV~~~ 188 (222)
..++++||-|..|+++ |.. .....+|||+--+
T Consensus 57 ~i~i~~I~eIr~G~~s~~~~~~~~-~~~~~~~FsIiy~ 93 (131)
T 1mai_A 57 LFSIEDIQEVRMGHRTEGLEKFAR-DIPEDRCFSIVFK 93 (131)
T ss_dssp EEEGGGEEEEEESSCSHHHHHHCT-TSCGGGEEEEEES
T ss_pred EEEHhhhHHHHCCCCCHHHHhhhh-cCCccceEEEEEC
Confidence 4688999999999933 111 1136799998443
No 15
>1o6d_A Hypothetical UPF0247 protein TM0844; structural genomics, unknown function; 1.66A {Thermotoga maritima} SCOP: c.116.1.3
Probab=22.72 E-value=15 Score=30.06 Aligned_cols=23 Identities=35% Similarity=0.519 Sum_probs=11.6
Q ss_pred cchhhhhhhcCCCCCeEEEEEcCCCCCCCCCCc
Q 047176 147 QHLIFNALNTTPFDRVKAVIIGQDPYHGPGQAM 179 (222)
Q Consensus 147 ~~~IF~af~~tp~~~VKVVILGQDPYh~pgqA~ 179 (222)
.|+|||||. |+--.|||..|-.|
T Consensus 136 ~EQiYRA~t----------Il~g~PYHk~~~~~ 158 (163)
T 1o6d_A 136 LEQIFRAFK----------IIHGENYHYEGGSH 158 (163)
T ss_dssp HHHHHHHHH----------HHTCC---------
T ss_pred HHHHHHHHH----------HHCCCCCcCCCCcc
Confidence 578899987 78889999987544
No 16
>3t49_A SCIN-B, fibrinogen-binding protein; secreted, virulence, immune system; HET: GOL; 1.45A {Staphylococcus aureus subsp} PDB: 3t4a_G
Probab=20.91 E-value=38 Score=24.46 Aligned_cols=19 Identities=32% Similarity=0.377 Sum_probs=12.5
Q ss_pred CCHHHHhHHHHhHHHHHhH
Q 047176 62 LTAEQQSRIEFNRYVAKSK 80 (222)
Q Consensus 62 ls~eq~~r~~~nk~~A~~k 80 (222)
|.+.++..|..|+..|++-
T Consensus 26 Ln~YyKR~Imm~~y~AK~A 44 (73)
T 3t49_A 26 LNPYYKRTIMMNEYRAKAA 44 (73)
T ss_dssp SCHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHH
Confidence 6667777777776666553
No 17
>4ds2_A Ubiquitin-conjugating enzyme E2, putative; structural genomics, PSI, protein structure initiative; 2.63A {Trypanosoma cruzi}
Probab=20.18 E-value=75 Score=25.18 Aligned_cols=24 Identities=13% Similarity=0.016 Sum_probs=15.8
Q ss_pred CeeeCCcchhhhhhhcCCCCCeEEEEEcCC--CCC
Q 047176 141 VDIFPPQHLIFNALNTTPFDRVKAVIIGQD--PYH 173 (222)
Q Consensus 141 ~~I~P~~~~IF~af~~tp~~~VKVVILGQD--PYh 173 (222)
+.+.|..+++|.| +|+|.|-+ ||.
T Consensus 40 i~~~~~~~nl~~w---------~~~i~Gp~~tpye 65 (167)
T 4ds2_A 40 AIFSVDTDTIYNW---------ILKVKAPADSVYG 65 (167)
T ss_dssp EEEEEEESSTTEE---------EEEEECCTTSGGG
T ss_pred EEEEeCCCcccEE---------EEEEECCCCCCcc
Confidence 3455666666654 68899854 777
No 18
>2c2v_B Ubiquitin-conjugating enzyme E2 N; chaperone, heat-shock protein complex, E3 ligase, ubiquitiny TPR, heat-shock protein; 2.9A {Homo sapiens} SCOP: d.20.1.1
Probab=20.16 E-value=1.7e+02 Score=22.66 Aligned_cols=45 Identities=24% Similarity=0.465 Sum_probs=24.2
Q ss_pred CCeeeCCcchhhhhhhcCCCCCeEEEEEcCC--CCCCCCCCceeecccCCCCC-CCccH
Q 047176 140 GVDIFPPQHLIFNALNTTPFDRVKAVIIGQD--PYHGPGQAMGLSFSVPEGVK-IPSSL 195 (222)
Q Consensus 140 ~~~I~P~~~~IF~af~~tp~~~VKVVILGQD--PYh~pgqA~GLAFSV~~~v~-iPpSL 195 (222)
++.+.|..+++|. .+++|.|-+ ||.| |. --|.+..+.+++ -||..
T Consensus 24 ~i~~~~~~~~l~~---------w~~~i~GP~~tpyeg-g~-f~~~i~fp~~YP~~PP~v 71 (154)
T 2c2v_B 24 GIKAEPDESNARY---------FHVVIAGPQDSPFEG-GT-FKLELFLPEEYPMAAPKV 71 (154)
T ss_dssp TEEEEECSSCTTE---------EEEEEECCTTSTTTT-CE-EEEEEECCTTTTSSCCEE
T ss_pred CEEEEECCCchhe---------EEEEEECCCCCCcCC-Ce-EEEEEEcCCCCCCCCCEE
Confidence 3456666665555 478898844 7765 21 113334455554 35543
Done!