Query 047178
Match_columns 287
No_of_seqs 317 out of 1493
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 08:30:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047178.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047178hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03081 pentatricopeptide (PP 99.9 5.6E-25 1.2E-29 225.6 19.9 173 77-256 294-479 (697)
2 PLN03218 maturation of RBCL 1; 99.9 1.6E-23 3.5E-28 223.8 22.2 165 77-244 618-782 (1060)
3 PLN03218 maturation of RBCL 1; 99.9 2.1E-23 4.5E-28 223.0 22.7 162 78-242 477-640 (1060)
4 PLN03081 pentatricopeptide (PP 99.9 1.1E-22 2.3E-27 208.8 19.9 167 76-255 161-376 (697)
5 PLN03077 Protein ECB2; Provisi 99.9 4.8E-22 1E-26 208.1 19.3 170 79-255 259-440 (857)
6 PLN03077 Protein ECB2; Provisi 99.9 2E-21 4.3E-26 203.5 19.0 169 77-256 125-340 (857)
7 PF13041 PPR_2: PPR repeat fam 99.5 1.1E-14 2.4E-19 101.0 6.4 49 179-228 2-50 (50)
8 PF13041 PPR_2: PPR repeat fam 99.5 4.8E-14 1E-18 97.8 5.9 50 142-192 1-50 (50)
9 PF12854 PPR_1: PPR repeat 99.2 1.2E-11 2.7E-16 79.9 4.4 34 138-171 1-34 (34)
10 PF12854 PPR_1: PPR repeat 98.9 2.6E-09 5.6E-14 69.0 4.2 32 210-242 2-33 (34)
11 TIGR00756 PPR pentatricopeptid 98.9 3.4E-09 7.4E-14 66.4 4.6 33 182-214 2-34 (35)
12 PRK11788 tetratricopeptide rep 98.8 3.4E-07 7.4E-12 86.5 19.1 122 119-245 190-311 (389)
13 PRK11788 tetratricopeptide rep 98.8 3.6E-07 7.8E-12 86.3 17.9 130 111-246 216-348 (389)
14 PF01535 PPR: PPR repeat; Int 98.6 5.6E-08 1.2E-12 59.7 3.5 30 182-211 2-31 (31)
15 TIGR02917 PEP_TPR_lipo putativ 98.6 7.5E-06 1.6E-10 83.0 20.3 127 111-243 772-898 (899)
16 KOG4422 Uncharacterized conser 98.5 1.3E-06 2.7E-11 85.7 13.0 138 110-256 208-349 (625)
17 PF13812 PPR_3: Pentatricopept 98.5 2.6E-07 5.5E-12 58.0 4.4 33 181-213 2-34 (34)
18 TIGR02917 PEP_TPR_lipo putativ 98.4 2.3E-05 5E-10 79.5 20.2 126 112-242 604-729 (899)
19 PF01535 PPR: PPR repeat; Int 98.4 3E-07 6.4E-12 56.4 3.4 31 145-175 1-31 (31)
20 KOG4422 Uncharacterized conser 98.3 2.4E-05 5.1E-10 77.0 15.9 159 78-242 212-382 (625)
21 TIGR00756 PPR pentatricopeptid 98.3 1.4E-06 2.9E-11 54.3 4.2 32 145-176 1-32 (35)
22 TIGR02521 type_IV_pilW type IV 98.1 0.00026 5.7E-09 59.8 17.1 162 79-245 37-198 (234)
23 PF13812 PPR_3: Pentatricopept 98.1 4.1E-06 8.9E-11 52.4 4.3 33 144-176 1-33 (34)
24 TIGR02521 type_IV_pilW type IV 98.1 0.00053 1.2E-08 57.9 17.3 131 111-245 101-232 (234)
25 PF04733 Coatomer_E: Coatomer 97.8 0.0002 4.3E-09 67.3 11.4 163 71-241 63-226 (290)
26 PF06239 ECSIT: Evolutionarily 97.8 0.00025 5.3E-09 64.4 11.2 90 121-231 64-153 (228)
27 PF10037 MRP-S27: Mitochondria 97.8 0.00045 9.8E-09 68.4 13.7 98 142-241 64-163 (429)
28 PRK15174 Vi polysaccharide exp 97.8 0.003 6.6E-08 65.5 20.2 123 117-244 220-346 (656)
29 TIGR00990 3a0801s09 mitochondr 97.7 0.0045 9.7E-08 63.2 20.5 130 111-245 367-496 (615)
30 PRK15174 Vi polysaccharide exp 97.7 0.0053 1.2E-07 63.7 20.3 130 112-246 249-382 (656)
31 PF09295 ChAPs: ChAPs (Chs5p-A 97.6 0.0028 6E-08 62.3 16.7 126 112-245 172-297 (395)
32 PRK12370 invasion protein regu 97.6 0.0036 7.8E-08 63.5 17.9 122 118-243 347-468 (553)
33 KOG4318 Bicoid mRNA stability 97.6 0.00011 2.3E-09 77.4 6.5 109 130-252 11-119 (1088)
34 PF10037 MRP-S27: Mitochondria 97.6 0.00068 1.5E-08 67.2 11.7 135 93-229 50-186 (429)
35 PF13429 TPR_15: Tetratricopep 97.6 0.00061 1.3E-08 62.3 10.3 124 114-241 115-239 (280)
36 cd00189 TPR Tetratricopeptide 97.4 0.0036 7.8E-08 44.0 11.0 93 147-243 3-95 (100)
37 PF13429 TPR_15: Tetratricopep 97.4 0.001 2.2E-08 60.9 9.1 125 112-242 149-274 (280)
38 PRK09782 bacteriophage N4 rece 97.3 0.022 4.7E-07 62.1 20.1 121 119-245 586-706 (987)
39 TIGR00990 3a0801s09 mitochondr 97.3 0.014 3E-07 59.7 17.8 125 114-244 336-461 (615)
40 TIGR02552 LcrH_SycD type III s 97.2 0.0091 2E-07 48.0 12.1 95 147-245 20-114 (135)
41 PRK15359 type III secretion sy 97.2 0.0095 2.1E-07 49.9 12.6 89 117-208 32-120 (144)
42 PRK10049 pgaA outer membrane p 97.2 0.046 1E-06 57.7 20.2 131 113-247 314-458 (765)
43 PF08579 RPM2: Mitochondrial r 97.1 0.008 1.7E-07 49.5 10.8 87 113-228 29-116 (120)
44 PRK14574 hmsH outer membrane p 97.0 0.041 8.9E-07 58.9 18.1 163 78-248 73-235 (822)
45 cd00189 TPR Tetratricopeptide 97.0 0.02 4.3E-07 40.1 11.1 91 115-208 6-96 (100)
46 PRK10049 pgaA outer membrane p 97.0 0.04 8.7E-07 58.1 17.9 160 75-244 17-178 (765)
47 PF09976 TPR_21: Tetratricopep 96.9 0.041 8.9E-07 45.6 13.7 122 114-241 17-143 (145)
48 PRK11447 cellulose synthase su 96.9 0.033 7.1E-07 61.4 16.5 124 119-245 279-414 (1157)
49 PRK15179 Vi polysaccharide bio 96.9 0.13 2.8E-06 54.2 20.0 127 115-247 92-219 (694)
50 PF12895 Apc3: Anaphase-promot 96.9 0.0021 4.5E-08 48.4 5.1 83 157-242 2-84 (84)
51 PRK11447 cellulose synthase su 96.9 0.033 7.2E-07 61.3 16.3 118 118-244 582-699 (1157)
52 TIGR02795 tol_pal_ybgF tol-pal 96.9 0.038 8.3E-07 42.6 12.4 91 119-209 12-105 (119)
53 PRK12370 invasion protein regu 96.8 0.2 4.4E-06 50.8 20.5 126 112-244 375-501 (553)
54 PRK09782 bacteriophage N4 rece 96.8 0.065 1.4E-06 58.4 17.6 124 116-245 549-672 (987)
55 PRK11189 lipoprotein NlpI; Pro 96.8 0.072 1.6E-06 49.7 15.7 117 119-241 74-190 (296)
56 KOG1840 Kinesin light chain [C 96.7 0.067 1.4E-06 54.3 15.9 132 112-243 328-477 (508)
57 TIGR02552 LcrH_SycD type III s 96.6 0.12 2.7E-06 41.3 14.0 96 115-215 23-118 (135)
58 PRK10370 formate-dependent nit 96.6 0.13 2.9E-06 45.4 15.2 118 125-247 55-175 (198)
59 TIGR02795 tol_pal_ybgF tol-pal 96.5 0.12 2.7E-06 39.7 13.1 101 146-246 4-106 (119)
60 PF05843 Suf: Suppressor of fo 96.5 0.073 1.6E-06 49.5 13.7 133 112-248 4-139 (280)
61 TIGR03302 OM_YfiO outer membra 96.5 0.48 1E-05 41.7 18.3 131 112-244 73-231 (235)
62 KOG4318 Bicoid mRNA stability 96.5 0.011 2.5E-07 62.6 8.8 93 141-238 201-293 (1088)
63 KOG3081 Vesicle coat complex C 96.5 0.097 2.1E-06 49.1 14.0 154 78-243 76-234 (299)
64 PRK15359 type III secretion sy 96.5 0.18 4E-06 42.0 14.6 95 147-245 27-121 (144)
65 PRK14574 hmsH outer membrane p 96.3 0.17 3.6E-06 54.3 16.4 53 186-240 422-474 (822)
66 PF04733 Coatomer_E: Coatomer 96.3 0.099 2.1E-06 49.2 13.2 127 113-245 135-265 (290)
67 PRK10747 putative protoheme IX 96.2 0.91 2E-05 44.1 20.2 131 108-242 117-289 (398)
68 PRK11189 lipoprotein NlpI; Pro 96.1 0.25 5.5E-06 46.0 15.0 118 124-245 41-161 (296)
69 PLN03088 SGT1, suppressor of 96.1 0.09 1.9E-06 50.7 12.2 102 116-223 9-110 (356)
70 KOG3941 Intermediate in Toll s 96.1 0.093 2E-06 49.9 11.6 90 121-231 84-173 (406)
71 KOG1840 Kinesin light chain [C 96.0 0.25 5.5E-06 50.2 15.4 138 110-247 200-356 (508)
72 KOG2076 RNA polymerase III tra 96.0 0.28 6E-06 52.3 15.9 172 66-242 370-552 (895)
73 PF08579 RPM2: Mitochondrial r 95.9 0.096 2.1E-06 43.2 9.7 50 107-156 59-116 (120)
74 cd05804 StaR_like StaR_like; a 95.9 0.24 5.3E-06 46.1 13.9 93 148-242 118-212 (355)
75 PRK02603 photosystem I assembl 95.8 0.79 1.7E-05 38.9 15.7 111 114-231 40-166 (172)
76 PRK02603 photosystem I assembl 95.8 0.3 6.6E-06 41.5 12.9 102 144-247 35-144 (172)
77 PRK10747 putative protoheme IX 95.8 1.5 3.3E-05 42.6 19.2 124 112-244 266-389 (398)
78 PF14559 TPR_19: Tetratricopep 95.7 0.051 1.1E-06 38.6 6.8 51 156-208 3-53 (68)
79 PLN03088 SGT1, suppressor of 95.7 0.33 7.1E-06 46.8 14.4 91 152-246 10-100 (356)
80 COG2956 Predicted N-acetylgluc 95.7 0.37 8.1E-06 46.5 14.2 138 106-248 138-281 (389)
81 TIGR00540 hemY_coli hemY prote 95.6 2.4 5.1E-05 41.3 20.7 125 117-245 161-292 (409)
82 TIGR00540 hemY_coli hemY prote 95.6 2.2 4.8E-05 41.5 19.9 128 114-246 268-400 (409)
83 PF14559 TPR_19: Tetratricopep 95.6 0.04 8.6E-07 39.1 5.7 55 119-174 1-55 (68)
84 COG4783 Putative Zn-dependent 95.5 0.55 1.2E-05 47.2 15.3 130 109-245 307-437 (484)
85 CHL00033 ycf3 photosystem I as 95.5 0.52 1.1E-05 39.8 13.4 101 145-247 36-144 (168)
86 KOG1070 rRNA processing protei 95.5 0.82 1.8E-05 51.2 17.5 126 112-244 1533-1662(1710)
87 COG5010 TadD Flp pilus assembl 95.5 0.75 1.6E-05 42.8 15.0 121 115-240 106-226 (257)
88 COG5010 TadD Flp pilus assembl 95.4 0.27 5.9E-06 45.7 12.0 118 119-241 76-193 (257)
89 cd05804 StaR_like StaR_like; a 95.4 0.39 8.4E-06 44.8 13.4 122 119-245 53-177 (355)
90 PRK15179 Vi polysaccharide bio 95.4 0.5 1.1E-05 49.8 15.4 100 140-244 82-182 (694)
91 TIGR03302 OM_YfiO outer membra 95.4 1.3 2.9E-05 38.8 16.0 131 111-246 35-196 (235)
92 PF12895 Apc3: Anaphase-promot 95.2 0.041 8.9E-07 41.2 5.0 81 122-205 2-83 (84)
93 PF03704 BTAD: Bacterial trans 95.2 0.1 2.2E-06 42.9 7.9 68 146-215 64-136 (146)
94 COG2956 Predicted N-acetylgluc 95.2 1.4 3E-05 42.7 16.3 121 115-241 75-205 (389)
95 PF13432 TPR_16: Tetratricopep 95.2 0.13 2.8E-06 36.3 7.4 55 152-208 5-59 (65)
96 PRK15363 pathogenicity island 95.2 0.76 1.6E-05 39.8 13.2 93 150-246 41-133 (157)
97 PF12569 NARP1: NMDA receptor- 95.1 1.1 2.5E-05 45.6 16.5 130 115-249 200-338 (517)
98 PF13424 TPR_12: Tetratricopep 95.1 0.064 1.4E-06 39.3 5.7 65 182-246 7-76 (78)
99 PF05843 Suf: Suppressor of fo 94.9 0.2 4.4E-06 46.6 9.7 95 145-242 2-96 (280)
100 KOG3616 Selective LIM binding 94.7 0.2 4.3E-06 52.9 9.7 112 113-239 736-847 (1636)
101 PF12921 ATP13: Mitochondrial 94.7 0.069 1.5E-06 44.3 5.3 88 143-231 1-103 (126)
102 CHL00033 ycf3 photosystem I as 94.7 1.2 2.6E-05 37.5 13.2 113 115-232 41-167 (168)
103 KOG4626 O-linked N-acetylgluco 94.6 0.89 1.9E-05 47.5 13.8 124 111-241 322-447 (966)
104 PF13432 TPR_16: Tetratricopep 94.5 0.24 5.1E-06 34.9 7.2 56 188-245 5-60 (65)
105 KOG1126 DNA-binding cell divis 94.4 0.59 1.3E-05 48.4 12.4 85 152-240 531-615 (638)
106 PF09976 TPR_21: Tetratricopep 94.3 2.5 5.4E-05 34.8 14.4 89 114-205 53-143 (145)
107 PRK10370 formate-dependent nit 94.1 1.4 3.1E-05 38.8 12.8 108 112-225 76-186 (198)
108 KOG2002 TPR-containing nuclear 94.1 0.31 6.7E-06 52.5 9.7 120 122-244 625-744 (1018)
109 PLN03098 LPA1 LOW PSII ACCUMUL 93.8 1.2 2.5E-05 44.7 12.6 63 109-173 75-141 (453)
110 PRK10803 tol-pal system protei 93.3 1.4 3.1E-05 40.9 11.8 98 145-246 144-247 (263)
111 KOG3081 Vesicle coat complex C 93.0 1.5 3.3E-05 41.3 11.3 109 116-232 144-257 (299)
112 PF06239 ECSIT: Evolutionarily 92.9 0.29 6.2E-06 44.7 6.3 67 93-159 71-153 (228)
113 PF13371 TPR_9: Tetratricopept 92.9 0.6 1.3E-05 33.4 7.0 57 152-210 3-59 (73)
114 KOG1914 mRNA cleavage and poly 92.9 4.6 9.9E-05 41.6 15.3 131 113-247 370-503 (656)
115 PF14938 SNAP: Soluble NSF att 92.7 1.1 2.5E-05 41.3 10.3 109 147-256 117-236 (282)
116 PF09295 ChAPs: ChAPs (Chs5p-A 92.7 2.6 5.7E-05 41.6 13.2 90 115-208 206-296 (395)
117 PF13424 TPR_12: Tetratricopep 92.5 0.34 7.3E-06 35.4 5.3 62 145-206 6-72 (78)
118 KOG4626 O-linked N-acetylgluco 92.4 2.3 4.9E-05 44.6 12.6 117 120-242 297-414 (966)
119 PF13170 DUF4003: Protein of u 92.3 3 6.5E-05 39.5 12.8 130 123-256 117-254 (297)
120 smart00299 CLH Clathrin heavy 92.3 5.2 0.00011 32.5 12.7 114 110-241 8-121 (140)
121 PF13414 TPR_11: TPR repeat; P 92.3 0.97 2.1E-05 32.0 7.4 59 183-243 6-65 (69)
122 PF12688 TPR_5: Tetratrico pep 92.2 2.2 4.7E-05 35.1 10.2 103 119-227 11-117 (120)
123 PRK10803 tol-pal system protei 92.1 3.8 8.2E-05 38.1 12.9 101 110-215 144-250 (263)
124 KOG4570 Uncharacterized conser 91.8 1.5 3.2E-05 42.4 9.9 104 137-242 57-161 (418)
125 PF12688 TPR_5: Tetratrico pep 91.6 3.9 8.5E-05 33.6 11.1 87 152-240 9-99 (120)
126 COG3063 PilF Tfp pilus assembl 91.3 9.7 0.00021 35.3 14.2 128 115-246 75-203 (250)
127 KOG1126 DNA-binding cell divis 91.2 2.5 5.5E-05 43.9 11.5 101 142-246 484-587 (638)
128 COG3063 PilF Tfp pilus assembl 91.2 13 0.00027 34.6 15.0 116 119-241 45-164 (250)
129 PF04840 Vps16_C: Vps16, C-ter 91.1 4.4 9.5E-05 38.8 12.5 113 106-240 174-286 (319)
130 KOG1129 TPR repeat-containing 91.1 4.7 0.0001 39.4 12.5 127 110-242 257-384 (478)
131 PF03704 BTAD: Bacterial trans 91.0 1.9 4E-05 35.3 8.7 63 183-247 65-127 (146)
132 KOG4570 Uncharacterized conser 91.0 0.83 1.8E-05 44.1 7.3 93 69-174 73-165 (418)
133 PF13371 TPR_9: Tetratricopept 90.9 1.1 2.5E-05 31.9 6.5 51 190-242 5-55 (73)
134 KOG2376 Signal recognition par 90.7 3.8 8.2E-05 42.4 12.1 90 111-211 48-141 (652)
135 COG3071 HemY Uncharacterized e 90.6 18 0.0004 35.7 16.2 123 114-245 268-390 (400)
136 COG3629 DnrI DNA-binding trans 90.5 2.6 5.7E-05 39.8 10.2 77 145-224 154-235 (280)
137 PF13414 TPR_11: TPR repeat; P 90.5 1.5 3.2E-05 31.0 6.8 62 144-207 3-65 (69)
138 COG5107 RNA14 Pre-mRNA 3'-end 90.2 6.8 0.00015 39.8 13.1 117 123-247 411-533 (660)
139 KOG3785 Uncharacterized conser 90.0 3.4 7.4E-05 40.7 10.6 123 114-242 364-487 (557)
140 PF12921 ATP13: Mitochondrial 89.9 3.2 6.9E-05 34.4 9.2 79 113-191 6-99 (126)
141 PRK14720 transcript cleavage f 89.6 12 0.00027 40.8 15.5 130 110-248 32-181 (906)
142 PRK14720 transcript cleavage f 88.6 7.6 0.00016 42.3 13.1 77 115-209 122-198 (906)
143 PF13170 DUF4003: Protein of u 88.5 23 0.00049 33.6 17.5 123 125-253 78-212 (297)
144 PF10366 Vps39_1: Vacuolar sor 88.4 3.1 6.7E-05 33.5 7.9 49 183-231 42-94 (108)
145 KOG1070 rRNA processing protei 88.3 34 0.00073 39.2 17.7 131 109-243 1564-1698(1710)
146 KOG1155 Anaphase-promoting com 87.9 34 0.00073 34.9 16.7 101 142-246 396-496 (559)
147 PRK10153 DNA-binding transcrip 87.3 36 0.00079 34.7 16.6 113 125-242 358-479 (517)
148 KOG2076 RNA polymerase III tra 87.2 10 0.00022 41.0 12.7 125 114-241 382-508 (895)
149 KOG2053 Mitochondrial inherita 87.2 10 0.00022 41.0 12.8 65 108-173 40-106 (932)
150 KOG2003 TPR repeat-containing 87.1 4.2 9.1E-05 41.2 9.3 113 122-239 503-615 (840)
151 PF00637 Clathrin: Region in C 86.7 0.18 3.9E-06 41.3 -0.3 84 115-206 13-96 (143)
152 KOG0547 Translocase of outer m 86.5 35 0.00076 35.0 15.4 127 110-241 429-562 (606)
153 KOG3060 Uncharacterized conser 86.4 26 0.00057 33.0 13.6 100 140-244 47-148 (289)
154 KOG3616 Selective LIM binding 86.0 4 8.6E-05 43.7 8.8 47 115-170 771-817 (1636)
155 PLN03098 LPA1 LOW PSII ACCUMUL 85.6 4.7 0.0001 40.5 8.9 67 142-210 73-142 (453)
156 COG5107 RNA14 Pre-mRNA 3'-end 85.3 16 0.00034 37.2 12.3 94 143-240 396-490 (660)
157 PF10300 DUF3808: Protein of u 85.2 14 0.00029 37.2 12.2 121 123-247 247-378 (468)
158 KOG1173 Anaphase-promoting com 85.2 22 0.00047 36.9 13.4 73 148-225 459-531 (611)
159 KOG0495 HAT repeat protein [RN 85.0 46 0.001 35.4 15.8 102 145-251 585-686 (913)
160 PRK04841 transcriptional regul 84.9 34 0.00074 36.3 15.6 130 118-247 500-643 (903)
161 KOG1156 N-terminal acetyltrans 84.7 28 0.00061 36.6 14.1 131 110-248 372-514 (700)
162 PF12569 NARP1: NMDA receptor- 84.7 51 0.0011 33.8 16.3 91 146-240 196-286 (517)
163 PF14938 SNAP: Soluble NSF att 84.5 13 0.00029 34.3 11.0 130 112-244 38-183 (282)
164 KOG1173 Anaphase-promoting com 84.4 7.8 0.00017 40.0 9.9 55 183-239 458-512 (611)
165 smart00299 CLH Clathrin heavy 83.9 16 0.00035 29.5 10.2 56 146-204 9-64 (140)
166 COG4783 Putative Zn-dependent 82.1 62 0.0013 32.9 16.3 119 113-235 344-463 (484)
167 KOG0553 TPR repeat-containing 82.1 15 0.00032 35.2 10.2 91 119-215 91-182 (304)
168 PRK15331 chaperone protein Sic 82.1 11 0.00025 32.8 8.8 86 154-244 47-133 (165)
169 KOG2002 TPR-containing nuclear 80.7 25 0.00055 38.5 12.4 87 156-247 624-711 (1018)
170 PRK04841 transcriptional regul 80.6 83 0.0018 33.4 17.2 130 117-247 620-762 (903)
171 PF09205 DUF1955: Domain of un 80.6 26 0.00056 30.2 10.1 54 186-241 92-145 (161)
172 PLN02789 farnesyltranstransfer 80.3 56 0.0012 31.2 15.1 105 120-229 82-189 (320)
173 KOG1128 Uncharacterized conser 80.3 39 0.00085 36.0 13.4 121 46-168 338-481 (777)
174 PRK10153 DNA-binding transcrip 80.2 33 0.00071 35.1 12.8 66 142-210 418-483 (517)
175 KOG1155 Anaphase-promoting com 79.7 48 0.001 33.8 13.3 120 117-241 338-457 (559)
176 KOG1129 TPR repeat-containing 79.4 25 0.00055 34.5 10.9 91 148-244 227-318 (478)
177 KOG4340 Uncharacterized conser 78.2 58 0.0013 31.7 12.8 159 76-240 144-334 (459)
178 COG1729 Uncharacterized protei 77.2 27 0.00059 32.7 10.2 101 146-251 144-250 (262)
179 PF00637 Clathrin: Region in C 76.9 0.65 1.4E-05 37.9 -0.5 85 149-242 12-96 (143)
180 PF11663 Toxin_YhaV: Toxin wit 76.8 2.7 5.8E-05 35.7 3.2 33 191-226 106-138 (140)
181 KOG2376 Signal recognition par 76.7 85 0.0018 32.9 14.3 125 111-240 378-515 (652)
182 PF13374 TPR_10: Tetratricopep 76.1 6.2 0.00013 24.6 4.2 25 146-170 4-28 (42)
183 KOG2053 Mitochondrial inherita 76.0 15 0.00032 39.8 9.0 125 116-251 16-142 (932)
184 PF13176 TPR_7: Tetratricopept 75.1 6.7 0.00015 24.7 4.1 23 183-205 2-24 (36)
185 KOG0495 HAT repeat protein [RN 74.8 1.3E+02 0.0027 32.4 17.9 127 111-241 620-778 (913)
186 PF09613 HrpB1_HrpK: Bacterial 74.4 31 0.00068 30.0 9.2 106 120-237 21-130 (160)
187 COG2178 Predicted RNA-binding 74.1 68 0.0015 29.0 11.4 113 126-250 20-155 (204)
188 KOG0548 Molecular co-chaperone 73.9 15 0.00033 37.5 8.2 103 118-226 11-114 (539)
189 PF13374 TPR_10: Tetratricopep 73.3 10 0.00023 23.5 4.7 32 217-248 3-34 (42)
190 KOG0985 Vesicle coat protein c 73.2 55 0.0012 36.6 12.4 85 145-239 1105-1189(1666)
191 PF07079 DUF1347: Protein of u 72.8 74 0.0016 32.5 12.5 123 119-246 16-158 (549)
192 KOG1125 TPR repeat-containing 72.2 47 0.001 34.5 11.1 117 128-249 413-531 (579)
193 KOG1128 Uncharacterized conser 71.9 16 0.00035 38.8 8.0 81 148-241 402-482 (777)
194 PF13176 TPR_7: Tetratricopept 71.5 7.9 0.00017 24.4 3.8 26 146-171 1-26 (36)
195 KOG1914 mRNA cleavage and poly 71.1 80 0.0017 32.9 12.4 97 145-245 367-464 (656)
196 TIGR02561 HrpB1_HrpK type III 70.6 37 0.00081 29.3 8.7 85 122-214 23-111 (153)
197 cd08819 CARD_MDA5_2 Caspase ac 70.4 26 0.00055 27.6 7.0 65 163-235 21-85 (88)
198 PF11663 Toxin_YhaV: Toxin wit 69.9 5.4 0.00012 33.9 3.4 30 156-188 107-136 (140)
199 PRK10866 outer membrane biogen 69.8 82 0.0018 28.6 11.5 52 121-173 44-98 (243)
200 PF13929 mRNA_stabil: mRNA sta 69.0 54 0.0012 31.3 10.2 62 140-201 198-259 (292)
201 PF13512 TPR_18: Tetratricopep 68.9 73 0.0016 27.1 10.4 73 121-195 22-97 (142)
202 PF13428 TPR_14: Tetratricopep 68.5 18 0.00038 23.6 5.1 26 183-208 4-29 (44)
203 PF04184 ST7: ST7 protein; In 67.2 18 0.00039 37.0 7.0 58 188-245 267-324 (539)
204 KOG2796 Uncharacterized conser 65.3 93 0.002 29.9 10.8 127 116-245 184-315 (366)
205 KOG4340 Uncharacterized conser 65.2 22 0.00047 34.6 6.7 57 154-212 154-210 (459)
206 PF04184 ST7: ST7 protein; In 64.2 94 0.002 32.0 11.3 79 150-230 265-345 (539)
207 cd08819 CARD_MDA5_2 Caspase ac 63.7 48 0.001 26.1 7.3 67 128-201 21-87 (88)
208 PF13428 TPR_14: Tetratricopep 63.2 14 0.00031 24.1 3.9 29 146-174 3-31 (44)
209 KOG3941 Intermediate in Toll s 63.2 22 0.00047 34.3 6.3 67 93-159 91-173 (406)
210 COG4700 Uncharacterized protei 63.1 1.2E+02 0.0027 27.7 11.6 140 107-251 87-232 (251)
211 KOG1915 Cell cycle control pro 62.6 2E+02 0.0042 29.9 14.7 30 141-170 171-200 (677)
212 COG3071 HemY Uncharacterized e 61.6 1.8E+02 0.0038 29.0 19.5 133 77-212 86-219 (400)
213 PF10602 RPN7: 26S proteasome 61.6 49 0.0011 28.7 8.0 96 145-241 37-138 (177)
214 PRK15363 pathogenicity island 60.7 1.1E+02 0.0024 26.4 10.2 88 117-208 43-131 (157)
215 PF13525 YfiO: Outer membrane 59.9 1.2E+02 0.0026 26.5 12.1 115 119-243 15-137 (203)
216 KOG0553 TPR repeat-containing 59.5 1.6E+02 0.0034 28.3 11.4 85 155-243 92-176 (304)
217 KOG2047 mRNA splicing factor [ 58.9 2.6E+02 0.0056 30.0 13.8 96 111-209 171-277 (835)
218 COG3898 Uncharacterized membra 56.6 2.3E+02 0.0049 28.7 12.3 19 223-241 270-288 (531)
219 PF04840 Vps16_C: Vps16, C-ter 56.4 1.9E+02 0.0041 27.7 15.0 101 146-258 179-281 (319)
220 COG4235 Cytochrome c biogenesi 56.2 1.8E+02 0.0039 27.7 11.2 100 142-246 154-257 (287)
221 KOG0548 Molecular co-chaperone 56.0 1.1E+02 0.0023 31.7 10.1 57 116-174 43-100 (539)
222 PF08311 Mad3_BUB1_I: Mad3/BUB 55.9 29 0.00063 28.5 5.3 45 197-241 80-124 (126)
223 PF10602 RPN7: 26S proteasome 55.8 1.4E+02 0.003 25.9 10.1 95 111-205 38-138 (177)
224 KOG1915 Cell cycle control pro 55.8 2.4E+02 0.0052 29.3 12.4 126 112-245 110-236 (677)
225 PF11846 DUF3366: Domain of un 55.6 53 0.0012 28.3 7.2 56 191-247 119-175 (193)
226 PF13512 TPR_18: Tetratricopep 55.4 1.3E+02 0.0029 25.6 12.0 102 145-250 12-130 (142)
227 KOG4162 Predicted calmodulin-b 54.6 1.4E+02 0.003 32.2 11.0 109 135-246 314-424 (799)
228 PF08631 SPO22: Meiosis protei 53.8 1.6E+02 0.0034 27.1 10.4 85 156-240 5-108 (278)
229 PF14689 SPOB_a: Sensor_kinase 53.7 20 0.00043 25.9 3.5 24 185-208 28-51 (62)
230 PF07721 TPR_4: Tetratricopept 53.4 21 0.00046 20.9 3.0 19 150-168 7-25 (26)
231 PF11848 DUF3368: Domain of un 52.4 50 0.0011 22.5 5.2 33 191-224 13-45 (48)
232 COG1729 Uncharacterized protei 52.0 1.4E+02 0.0031 28.0 9.7 99 111-214 144-247 (262)
233 PRK11906 transcriptional regul 51.5 2.1E+02 0.0046 29.1 11.4 93 143-239 337-430 (458)
234 PF11207 DUF2989: Protein of u 51.5 1.4E+02 0.003 27.0 9.2 74 160-236 122-198 (203)
235 PF09613 HrpB1_HrpK: Bacterial 50.9 1.7E+02 0.0036 25.5 12.6 63 146-210 9-74 (160)
236 KOG0985 Vesicle coat protein c 50.7 3.9E+02 0.0085 30.4 13.7 87 143-240 1132-1218(1666)
237 KOG2003 TPR repeat-containing 50.6 3.1E+02 0.0066 28.4 16.9 68 160-232 642-710 (840)
238 COG4700 Uncharacterized protei 49.6 2.1E+02 0.0045 26.2 15.3 106 140-249 85-193 (251)
239 PF09205 DUF1955: Domain of un 49.6 1.2E+02 0.0025 26.3 7.9 102 91-212 51-152 (161)
240 COG3629 DnrI DNA-binding trans 49.0 1.1E+02 0.0023 29.1 8.5 64 182-247 155-218 (280)
241 PF04053 Coatomer_WDAD: Coatom 49.0 2.9E+02 0.0063 27.7 16.2 118 108-242 294-428 (443)
242 KOG1156 N-terminal acetyltrans 48.8 3.6E+02 0.0078 28.7 15.5 89 147-240 374-463 (700)
243 PF11846 DUF3366: Domain of un 48.4 64 0.0014 27.8 6.6 28 181-208 145-172 (193)
244 KOG1920 IkappaB kinase complex 47.9 1.7E+02 0.0037 33.1 10.7 83 111-205 967-1051(1265)
245 PF10579 Rapsyn_N: Rapsyn N-te 47.8 35 0.00076 26.4 4.2 45 157-201 19-64 (80)
246 PRK14135 recX recombination re 47.3 2.1E+02 0.0046 26.0 10.1 106 111-241 59-164 (263)
247 TIGR02508 type_III_yscG type I 47.2 66 0.0014 26.3 5.8 79 125-211 21-99 (115)
248 PF08311 Mad3_BUB1_I: Mad3/BUB 46.1 70 0.0015 26.2 6.1 44 162-205 81-124 (126)
249 PF00515 TPR_1: Tetratricopept 45.2 52 0.0011 19.6 4.1 27 182-208 3-29 (34)
250 KOG2280 Vacuolar assembly/sort 44.5 2.4E+02 0.0052 30.5 10.8 114 106-240 681-794 (829)
251 COG4105 ComL DNA uptake lipopr 43.2 2.8E+02 0.0062 25.9 11.7 101 146-250 37-147 (254)
252 KOG2280 Vacuolar assembly/sort 42.9 56 0.0012 35.1 6.0 73 116-204 722-794 (829)
253 PF07218 RAP1: Rhoptry-associa 42.4 73 0.0016 33.2 6.6 112 70-191 537-660 (782)
254 PF10300 DUF3808: Protein of u 42.3 3.7E+02 0.008 27.0 12.6 130 110-243 189-332 (468)
255 KOG2114 Vacuolar assembly/sort 41.7 2.5E+02 0.0055 30.8 10.6 87 112-203 400-486 (933)
256 PF13431 TPR_17: Tetratricopep 40.8 27 0.00058 21.9 2.2 24 213-236 10-33 (34)
257 KOG2610 Uncharacterized conser 40.7 3.8E+02 0.0083 26.7 12.4 118 119-240 113-233 (491)
258 smart00777 Mad3_BUB1_I Mad3/BU 40.4 57 0.0012 27.1 4.7 44 197-240 80-123 (125)
259 KOG4555 TPR repeat-containing 40.4 2.4E+02 0.0053 24.4 10.2 95 153-251 52-150 (175)
260 PF10366 Vps39_1: Vacuolar sor 40.4 1.1E+02 0.0023 24.6 6.2 27 146-172 41-67 (108)
261 KOG1174 Anaphase-promoting com 39.6 4.3E+02 0.0094 27.0 16.7 50 189-240 343-392 (564)
262 KOG2422 Uncharacterized conser 39.1 4.5E+02 0.0098 27.8 11.6 104 112-215 345-466 (665)
263 PRK10866 outer membrane biogen 39.0 3E+02 0.0065 24.9 13.6 127 114-241 74-237 (243)
264 KOG3060 Uncharacterized conser 38.7 3.5E+02 0.0076 25.7 13.4 107 119-230 96-202 (289)
265 PF02284 COX5A: Cytochrome c o 38.7 1.1E+02 0.0023 25.0 5.8 42 198-240 28-69 (108)
266 cd00923 Cyt_c_Oxidase_Va Cytoc 38.4 1.2E+02 0.0026 24.5 6.0 42 198-240 25-66 (103)
267 PLN02789 farnesyltranstransfer 38.2 3.6E+02 0.0078 25.7 19.1 44 197-242 125-168 (320)
268 PF13525 YfiO: Outer membrane 37.9 2.7E+02 0.0059 24.2 12.1 54 154-208 15-70 (203)
269 PF04910 Tcf25: Transcriptiona 37.5 3.9E+02 0.0085 25.9 11.4 97 109-205 103-218 (360)
270 KOG3785 Uncharacterized conser 37.5 2.7E+02 0.0059 27.9 9.4 115 124-242 338-454 (557)
271 PF12796 Ank_2: Ankyrin repeat 37.5 1.1E+02 0.0023 22.3 5.5 77 129-214 10-86 (89)
272 PF01335 DED: Death effector d 37.5 1.1E+02 0.0024 23.0 5.6 40 198-240 38-78 (84)
273 PF13181 TPR_8: Tetratricopept 37.5 89 0.0019 18.4 4.4 27 219-245 4-30 (34)
274 COG2987 HutU Urocanate hydrata 37.3 25 0.00054 35.6 2.4 77 156-247 215-296 (561)
275 PF13174 TPR_6: Tetratricopept 37.2 41 0.00089 19.6 2.6 21 188-208 8-28 (33)
276 PF09454 Vps23_core: Vps23 cor 35.7 84 0.0018 23.1 4.5 49 142-192 6-54 (65)
277 PRK10564 maltose regulon perip 35.5 66 0.0014 30.8 4.9 38 210-247 251-288 (303)
278 KOG1125 TPR repeat-containing 35.2 2.1E+02 0.0045 29.9 8.6 91 159-251 409-499 (579)
279 PF07827 KNTase_C: KNTase C-te 35.2 1.1E+02 0.0023 26.3 5.5 65 182-250 61-125 (143)
280 PRK10564 maltose regulon perip 35.2 71 0.0015 30.6 5.0 33 181-213 258-290 (303)
281 KOG1127 TPR repeat-containing 34.1 4.8E+02 0.01 29.5 11.3 60 181-244 597-658 (1238)
282 KOG1127 TPR repeat-containing 34.1 2.7E+02 0.006 31.2 9.6 118 120-243 503-623 (1238)
283 PF14689 SPOB_a: Sensor_kinase 34.0 57 0.0012 23.4 3.3 25 148-172 27-51 (62)
284 smart00028 TPR Tetratricopepti 33.2 77 0.0017 16.7 3.3 26 183-208 4-29 (34)
285 KOG1538 Uncharacterized conser 32.1 1.3E+02 0.0028 32.3 6.6 91 142-240 554-656 (1081)
286 KOG2047 mRNA splicing factor [ 31.8 6.2E+02 0.013 27.3 11.3 99 147-245 390-506 (835)
287 PF13762 MNE1: Mitochondrial s 31.2 3.3E+02 0.0073 23.2 10.7 96 133-229 26-128 (145)
288 COG4105 ComL DNA uptake lipopr 30.8 3E+02 0.0066 25.7 8.3 68 179-247 34-102 (254)
289 smart00777 Mad3_BUB1_I Mad3/BU 30.5 1.5E+02 0.0032 24.6 5.7 44 161-204 80-123 (125)
290 PF11848 DUF3368: Domain of un 30.2 1.5E+02 0.0032 20.1 4.8 32 155-187 13-44 (48)
291 cd08812 CARD_RIG-I_like Caspas 29.9 1.5E+02 0.0031 22.9 5.2 37 158-199 48-85 (88)
292 KOG0276 Vesicle coat complex C 29.6 6.6E+02 0.014 26.9 11.1 98 121-241 649-746 (794)
293 cd08789 CARD_IPS-1_RIG-I Caspa 29.3 1.5E+02 0.0032 22.7 5.1 38 156-199 44-81 (84)
294 PF07035 Mic1: Colon cancer-as 28.9 3.9E+02 0.0085 23.3 12.0 105 111-231 31-135 (167)
295 KOG2114 Vacuolar assembly/sort 28.9 8.2E+02 0.018 27.0 11.9 111 110-234 335-449 (933)
296 PF10579 Rapsyn_N: Rapsyn N-te 28.6 1.5E+02 0.0031 23.0 4.8 48 192-239 18-66 (80)
297 KOG0547 Translocase of outer m 28.6 6.9E+02 0.015 26.0 15.6 130 112-246 363-492 (606)
298 KOG4555 TPR repeat-containing 28.5 2.1E+02 0.0045 24.8 6.2 57 189-247 52-108 (175)
299 PF09477 Type_III_YscG: Bacter 28.4 2.4E+02 0.0051 23.3 6.3 80 124-211 21-100 (116)
300 PF02607 B12-binding_2: B12 bi 28.0 1.2E+02 0.0025 22.0 4.3 40 192-232 13-52 (79)
301 PRK14951 DNA polymerase III su 27.9 6.8E+02 0.015 26.4 11.2 85 136-225 197-293 (618)
302 PF07719 TPR_2: Tetratricopept 27.2 1.4E+02 0.0029 17.4 4.1 22 186-207 7-28 (34)
303 PHA02875 ankyrin repeat protei 27.1 2.2E+02 0.0047 27.2 7.1 14 226-239 175-188 (413)
304 KOG1538 Uncharacterized conser 26.9 5E+02 0.011 28.1 9.8 76 154-241 757-842 (1081)
305 COG4003 Uncharacterized protei 26.7 85 0.0018 24.7 3.3 27 114-140 36-62 (98)
306 cd08789 CARD_IPS-1_RIG-I Caspa 26.6 2.9E+02 0.0064 21.1 6.9 50 182-237 34-83 (84)
307 COG0457 NrfG FOG: TPR repeat [ 26.4 3E+02 0.0065 21.1 15.9 92 153-245 139-231 (291)
308 KOG4648 Uncharacterized conser 26.2 2E+02 0.0043 28.7 6.4 107 117-238 105-217 (536)
309 KOG2041 WD40 repeat protein [G 25.8 1.9E+02 0.0042 31.3 6.6 20 184-203 856-875 (1189)
310 PF09868 DUF2095: Uncharacteri 25.7 1.9E+02 0.0042 24.0 5.4 27 114-140 66-92 (128)
311 cd08315 Death_TRAILR_DR4_DR5 D 25.6 2.1E+02 0.0046 22.4 5.5 39 133-174 56-94 (96)
312 PRK14971 DNA polymerase III su 25.6 5.9E+02 0.013 26.7 10.3 75 137-214 195-281 (614)
313 KOG3807 Predicted membrane pro 25.3 5.4E+02 0.012 25.6 9.1 53 189-244 284-339 (556)
314 PF02847 MA3: MA3 domain; Int 25.0 1.6E+02 0.0034 22.8 4.8 22 149-170 7-28 (113)
315 COG4455 ImpE Protein of avirul 24.6 5.5E+02 0.012 24.0 8.6 58 111-169 3-60 (273)
316 cd08326 CARD_CASP9 Caspase act 24.5 3.3E+02 0.0071 20.9 6.9 18 193-210 43-60 (84)
317 COG5187 RPN7 26S proteasome re 24.3 6.8E+02 0.015 24.5 12.1 71 182-258 117-191 (412)
318 PRK14958 DNA polymerase III su 24.0 7.8E+02 0.017 25.1 11.8 78 134-214 190-279 (509)
319 cd00045 DED The Death Effector 23.9 1.6E+02 0.0035 22.0 4.4 39 195-236 35-74 (77)
320 COG0735 Fur Fe2+/Zn2+ uptake r 23.6 2.1E+02 0.0045 24.0 5.4 41 133-174 10-50 (145)
321 cd08326 CARD_CASP9 Caspase act 23.6 3.4E+02 0.0074 20.7 6.7 62 129-199 19-80 (84)
322 PF07163 Pex26: Pex26 protein; 23.5 6.5E+02 0.014 24.2 9.1 21 183-203 156-181 (309)
323 PRK11906 transcriptional regul 23.5 7.3E+02 0.016 25.3 10.0 81 157-241 317-397 (458)
324 COG3947 Response regulator con 23.5 4.6E+02 0.0099 25.6 8.1 58 184-243 283-340 (361)
325 TIGR03504 FimV_Cterm FimV C-te 23.4 1.4E+02 0.0031 20.1 3.6 25 186-210 5-29 (44)
326 TIGR02508 type_III_yscG type I 23.0 4.3E+02 0.0093 21.7 7.1 67 148-239 25-91 (115)
327 cd07153 Fur_like Ferric uptake 22.9 1.9E+02 0.0041 22.5 4.8 45 187-232 7-51 (116)
328 PF07079 DUF1347: Protein of u 22.8 5.4E+02 0.012 26.5 8.8 86 154-245 16-108 (549)
329 smart00544 MA3 Domain in DAP-5 22.7 3.6E+02 0.0079 20.8 9.5 21 150-170 8-28 (113)
330 KOG0543 FKBP-type peptidyl-pro 22.3 5.9E+02 0.013 25.4 9.0 95 118-217 217-326 (397)
331 COG4455 ImpE Protein of avirul 21.9 3E+02 0.0065 25.7 6.4 77 146-225 3-81 (273)
332 cd08318 Death_NMPP84 Death dom 21.6 1.3E+02 0.0028 22.9 3.5 32 133-167 55-86 (86)
333 KOG1174 Anaphase-promoting com 21.5 3E+02 0.0065 28.1 6.7 94 146-245 196-295 (564)
334 KOG1920 IkappaB kinase complex 21.5 1E+03 0.022 27.4 11.3 28 141-168 932-963 (1265)
335 cd07230 Pat_TGL4-5_like Triacy 21.4 8.1E+02 0.018 24.3 10.4 43 129-171 89-134 (421)
336 PF13929 mRNA_stabil: mRNA sta 21.3 6.7E+02 0.015 24.0 8.8 116 124-241 143-263 (292)
337 KOG0991 Replication factor C, 21.2 1.8E+02 0.0038 27.6 4.8 72 155-229 203-285 (333)
338 smart00031 DED Death effector 21.1 1.8E+02 0.004 21.7 4.2 40 196-238 37-77 (79)
339 COG4235 Cytochrome c biogenesi 20.3 7.5E+02 0.016 23.5 12.5 101 118-224 165-268 (287)
340 PF11817 Foie-gras_1: Foie gra 20.3 6.4E+02 0.014 22.7 9.9 57 150-206 184-244 (247)
341 cd08332 CARD_CASP2 Caspase act 20.0 4.1E+02 0.009 20.4 7.7 66 163-238 22-87 (90)
No 1
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.93 E-value=5.6e-25 Score=225.61 Aligned_cols=173 Identities=12% Similarity=0.066 Sum_probs=145.1
Q ss_pred HHHHHHHHccCCCcchHHHHHHHHHHccCCCCHHHHHHHHHHHHHccchhhHHHHHHHHHHCCCCCChhHHHHHHHHHHH
Q 047178 77 NFLVNTLLDLKNSKEDVYGTLDAWVAWEQNFPVGSLKKALLALEKEQQWHRVVQVIKWMLSKGQGSTMGTCGQLIRALDM 156 (287)
Q Consensus 77 ~~Li~~l~~lg~~~~~v~~~Ld~~~~~~~~~~~~s~~~ai~~L~k~~~~~~A~qv~~~M~~~G~~pd~~TYnaLI~~y~K 156 (287)
+.|+..+++.|+.+++ ...+..+...+..+...++..++..+++.|.+++|.++|..|.+.|+.||..+||+||++|||
T Consensus 294 n~li~~y~~~g~~~eA-~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k 372 (697)
T PLN03081 294 NSMLAGYALHGYSEEA-LCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSK 372 (697)
T ss_pred HHHHHHHHhCCCHHHH-HHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHH
Confidence 3466666666665443 233444444555667788888999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChHHHHHHHHHHHHhcCCHHHHH
Q 047178 157 DHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNNMLERLIKLFKGLEAFDRKPPEKSIVQRVADAYEVLGLLEEKE 236 (287)
Q Consensus 157 ~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~G~leeA~ 236 (287)
+|++++|.++|++|.++++ ++||+||.+|+++|+.++|+++|++|.+.|+.||. +||++||++|++.|.+++|.
T Consensus 373 ~G~~~~A~~vf~~m~~~d~-----~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~-~T~~~ll~a~~~~g~~~~a~ 446 (697)
T PLN03081 373 WGRMEDARNVFDRMPRKNL-----ISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNH-VTFLAVLSACRYSGLSEQGW 446 (697)
T ss_pred CCCHHHHHHHHHhCCCCCe-----eeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCH-HHHHHHHHHHhcCCcHHHHH
Confidence 9999999999999987553 57999999999999999999999999999999995 99999999999999999999
Q ss_pred HHHHHHhH-------------HHhhhhcccccc
Q 047178 237 RVLEKYKD-------------LFTEKEKRSNKK 256 (287)
Q Consensus 237 ~ll~~m~~-------------l~~~~~~~~~~~ 256 (287)
++|++|.. +++.|++.++..
T Consensus 447 ~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~ 479 (697)
T PLN03081 447 EIFQSMSENHRIKPRAMHYACMIELLGREGLLD 479 (697)
T ss_pred HHHHHHHHhcCCCCCccchHhHHHHHHhcCCHH
Confidence 99998754 566777665543
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.91 E-value=1.6e-23 Score=223.79 Aligned_cols=165 Identities=11% Similarity=0.047 Sum_probs=137.4
Q ss_pred HHHHHHHHccCCCcchHHHHHHHHHHccCCCCHHHHHHHHHHHHHccchhhHHHHHHHHHHCCCCCChhHHHHHHHHHHH
Q 047178 77 NFLVNTLLDLKNSKEDVYGTLDAWVAWEQNFPVGSLKKALLALEKEQQWHRVVQVIKWMLSKGQGSTMGTCGQLIRALDM 156 (287)
Q Consensus 77 ~~Li~~l~~lg~~~~~v~~~Ld~~~~~~~~~~~~s~~~ai~~L~k~~~~~~A~qv~~~M~~~G~~pd~~TYnaLI~~y~K 156 (287)
+.||+.+++.|+.+++ ...++.+...+..++..+++.++..+++.|++++|.++|+.|.+.|+.||..|||+||++||+
T Consensus 618 nsLI~ay~k~G~~deA-l~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k 696 (1060)
T PLN03218 618 TIAVNSCSQKGDWDFA-LSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSN 696 (1060)
T ss_pred HHHHHHHHhcCCHHHH-HHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence 4567777777665443 233444445555667788888899999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChHHHHHHHHHHHHhcCCHHHHH
Q 047178 157 DHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNNMLERLIKLFKGLEAFDRKPPEKSIVQRVADAYEVLGLLEEKE 236 (287)
Q Consensus 157 ~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~G~leeA~ 236 (287)
+|++++|.++|++|...++. ++.++||+||++||+.|++++|+++|++|...|+.||. +||++||++|++.|++++|.
T Consensus 697 ~G~~eeA~~lf~eM~~~g~~-PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~-~Ty~sLL~a~~k~G~le~A~ 774 (1060)
T PLN03218 697 AKNWKKALELYEDIKSIKLR-PTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNT-ITYSILLVASERKDDADVGL 774 (1060)
T ss_pred CCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHHCCCHHHHH
Confidence 99999999999999888874 56688999999999999999999999999999999994 89999999999999999999
Q ss_pred HHHHHHhH
Q 047178 237 RVLEKYKD 244 (287)
Q Consensus 237 ~ll~~m~~ 244 (287)
++|++|..
T Consensus 775 ~l~~~M~k 782 (1060)
T PLN03218 775 DLLSQAKE 782 (1060)
T ss_pred HHHHHHHH
Confidence 99987654
No 3
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.91 E-value=2.1e-23 Score=222.96 Aligned_cols=162 Identities=9% Similarity=0.062 Sum_probs=83.4
Q ss_pred HHHHHHHccCCCcchHHHHHHHHHHccCCCCHHHHHHHHHHHHHccchhhHHHHHHHHHHCCCCCChhHHHHHHHHHHHc
Q 047178 78 FLVNTLLDLKNSKEDVYGTLDAWVAWEQNFPVGSLKKALLALEKEQQWHRVVQVIKWMLSKGQGSTMGTCGQLIRALDMD 157 (287)
Q Consensus 78 ~Li~~l~~lg~~~~~v~~~Ld~~~~~~~~~~~~s~~~ai~~L~k~~~~~~A~qv~~~M~~~G~~pd~~TYnaLI~~y~K~ 157 (287)
.||+.+++.|+.+.+ ...++.+...+......+++.+|.+|++.|++++|.++|+.|.+.|+.||.+|||+||++||+.
T Consensus 477 sLI~~y~k~G~vd~A-~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~ 555 (1060)
T PLN03218 477 TLISTCAKSGKVDAM-FEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQS 555 (1060)
T ss_pred HHHHHHHhCcCHHHH-HHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC
Confidence 355555555544322 2223333333333445555555555555555555555555555555555555555555555555
Q ss_pred CCHHHHHHHHHHhhh--CCCCCCChhhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChHHHHHHHHHHHHhcCCHHHH
Q 047178 158 HRAEEAHKFWEKRIG--IDLHSVPWQLCKSMIAIYYRNNMLERLIKLFKGLEAFDRKPPEKSIVQRVADAYEVLGLLEEK 235 (287)
Q Consensus 158 G~leeA~~lF~eM~~--~g~~sv~~~tyNsmIsgY~k~G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~G~leeA 235 (287)
|++++|.++|++|.. .++. ++.++||+||++||+.|++++|.++|++|.+.|+.|| .++|+++|++|++.|++++|
T Consensus 556 G~~deA~~lf~eM~~~~~gi~-PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~-~~tynsLI~ay~k~G~~deA 633 (1060)
T PLN03218 556 GAVDRAFDVLAEMKAETHPID-PDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGT-PEVYTIAVNSCSQKGDWDFA 633 (1060)
T ss_pred CCHHHHHHHHHHHHHhcCCCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC-hHHHHHHHHHHHhcCCHHHH
Confidence 555555555555543 2332 2334555555555555555555555555555555555 25555555555555555555
Q ss_pred HHHHHHH
Q 047178 236 ERVLEKY 242 (287)
Q Consensus 236 ~~ll~~m 242 (287)
..+|++|
T Consensus 634 l~lf~eM 640 (1060)
T PLN03218 634 LSIYDDM 640 (1060)
T ss_pred HHHHHHH
Confidence 5555443
No 4
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.90 E-value=1.1e-22 Score=208.77 Aligned_cols=167 Identities=13% Similarity=0.089 Sum_probs=137.7
Q ss_pred HHHHHHHHHccCCCcch--HHHHHHHHHHccCCCCHHHHHHHHHHHHHccchhhHHHHHHHHHHCCCC------------
Q 047178 76 INFLVNTLLDLKNSKED--VYGTLDAWVAWEQNFPVGSLKKALLALEKEQQWHRVVQVIKWMLSKGQG------------ 141 (287)
Q Consensus 76 ~~~Li~~l~~lg~~~~~--v~~~Ld~~~~~~~~~~~~s~~~ai~~L~k~~~~~~A~qv~~~M~~~G~~------------ 141 (287)
.+.|++.+++.|+.+.+ +|..|. .....+++.++.+|++.|++++|+++|++|.+.|..
T Consensus 161 ~n~Li~~y~k~g~~~~A~~lf~~m~-------~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a 233 (697)
T PLN03081 161 MNRVLLMHVKCGMLIDARRLFDEMP-------ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRA 233 (697)
T ss_pred HHHHHHHHhcCCCHHHHHHHHhcCC-------CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHH
Confidence 46688888888876544 333332 135677888888888888888888888888766554
Q ss_pred -----------------------CChhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHcCCHhH
Q 047178 142 -----------------------STMGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNNMLER 198 (287)
Q Consensus 142 -----------------------pd~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~G~~ee 198 (287)
||..+||+||++|+|+|++++|.++|++|..++ .++||+||++|+++|++++
T Consensus 234 ~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~-----~vt~n~li~~y~~~g~~~e 308 (697)
T PLN03081 234 SAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKT-----TVAWNSMLAGYALHGYSEE 308 (697)
T ss_pred HhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCC-----hhHHHHHHHHHHhCCCHHH
Confidence 455677899999999999999999999997654 3579999999999999999
Q ss_pred HHHHHHHHHHCCCCCChHHHHHHHHHHHHhcCCHHHHHHHHHHH------------hHHHhhhhccccc
Q 047178 199 LIKLFKGLEAFDRKPPEKSIVQRVADAYEVLGLLEEKERVLEKY------------KDLFTEKEKRSNK 255 (287)
Q Consensus 199 A~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~G~leeA~~ll~~m------------~~l~~~~~~~~~~ 255 (287)
|+++|++|.+.|+.||. +||+++|++|++.|.+++|+++|++| +.+++.|+|.++.
T Consensus 309 A~~lf~~M~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~ 376 (697)
T PLN03081 309 ALCLYYEMRDSGVSIDQ-FTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRM 376 (697)
T ss_pred HHHHHHHHHHcCCCCCH-HHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCH
Confidence 99999999999999995 99999999999999999999999865 4567788876654
No 5
>PLN03077 Protein ECB2; Provisional
Probab=99.89 E-value=4.8e-22 Score=208.11 Aligned_cols=170 Identities=15% Similarity=0.135 Sum_probs=135.2
Q ss_pred HHHHHHccCCCcchHHHHHHHHHHccCCCCHHHHHHHHHHHHHccchhhHHHHHHHHHHCCCCCChhHHHHHHHHHHHcC
Q 047178 79 LVNTLLDLKNSKEDVYGTLDAWVAWEQNFPVGSLKKALLALEKEQQWHRVVQVIKWMLSKGQGSTMGTCGQLIRALDMDH 158 (287)
Q Consensus 79 Li~~l~~lg~~~~~v~~~Ld~~~~~~~~~~~~s~~~ai~~L~k~~~~~~A~qv~~~M~~~G~~pd~~TYnaLI~~y~K~G 158 (287)
|+..+++.|...++ ...+.++...+..++..++..++.++++.++++.|.+++..|.+.|+.||..+||+||++|+++|
T Consensus 259 li~~~~~~g~~~eA-l~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g 337 (857)
T PLN03077 259 MISGYFENGECLEG-LELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLG 337 (857)
T ss_pred HHHHHHhCCCHHHH-HHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcC
Confidence 44444444444332 12333333444455667777777777777777777777888888888888999999999999999
Q ss_pred CHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChHHHHHHHHHHHHhcCCHHHHHHH
Q 047178 159 RAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNNMLERLIKLFKGLEAFDRKPPEKSIVQRVADAYEVLGLLEEKERV 238 (287)
Q Consensus 159 ~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~G~leeA~~l 238 (287)
++++|.++|++|..++. ++||+||++|++.|++++|+++|++|.+.|+.||. +||+++|.+|++.|++++|.++
T Consensus 338 ~~~~A~~vf~~m~~~d~-----~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~-~t~~~ll~a~~~~g~~~~a~~l 411 (857)
T PLN03077 338 SWGEAEKVFSRMETKDA-----VSWTAMISGYEKNGLPDKALETYALMEQDNVSPDE-ITIASVLSACACLGDLDVGVKL 411 (857)
T ss_pred CHHHHHHHHhhCCCCCe-----eeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCc-eeHHHHHHHHhccchHHHHHHH
Confidence 99999999999976543 57999999999999999999999999999999995 9999999999999999999999
Q ss_pred HHHH------------hHHHhhhhccccc
Q 047178 239 LEKY------------KDLFTEKEKRSNK 255 (287)
Q Consensus 239 l~~m------------~~l~~~~~~~~~~ 255 (287)
|+.| +.+++.|+|.++.
T Consensus 412 ~~~~~~~g~~~~~~~~n~Li~~y~k~g~~ 440 (857)
T PLN03077 412 HELAERKGLISYVVVANALIEMYSKCKCI 440 (857)
T ss_pred HHHHHHhCCCcchHHHHHHHHHHHHcCCH
Confidence 9865 4566777776654
No 6
>PLN03077 Protein ECB2; Provisional
Probab=99.87 E-value=2e-21 Score=203.52 Aligned_cols=169 Identities=14% Similarity=0.091 Sum_probs=125.8
Q ss_pred HHHHHHHHccCCCcchHHHHHHHHHHccCCCCHHHHHHHHHHHHHccchhhHHHHHHHHHHCCCCCC-------------
Q 047178 77 NFLVNTLLDLKNSKEDVYGTLDAWVAWEQNFPVGSLKKALLALEKEQQWHRVVQVIKWMLSKGQGST------------- 143 (287)
Q Consensus 77 ~~Li~~l~~lg~~~~~v~~~Ld~~~~~~~~~~~~s~~~ai~~L~k~~~~~~A~qv~~~M~~~G~~pd------------- 143 (287)
+.|++.+++.|+...+ +..++.+. ..+..+++.++.+|++.|++++|+++|++|...|+.||
T Consensus 125 n~li~~~~~~g~~~~A-~~~f~~m~----~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~ 199 (857)
T PLN03077 125 NAMLSMFVRFGELVHA-WYVFGKMP----ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGG 199 (857)
T ss_pred HHHHHHHHhCCChHHH-HHHHhcCC----CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCC
Confidence 5577777777765433 12222221 12455666677777777777777777777666666555
Q ss_pred ----------------------hhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHcCCHhHHHH
Q 047178 144 ----------------------MGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNNMLERLIK 201 (287)
Q Consensus 144 ----------------------~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~G~~eeA~~ 201 (287)
+.+||+||++|+++|++++|.++|++|..++. ++||+||.+|++.|++++|++
T Consensus 200 ~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~-----~s~n~li~~~~~~g~~~eAl~ 274 (857)
T PLN03077 200 IPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDC-----ISWNAMISGYFENGECLEGLE 274 (857)
T ss_pred ccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCc-----chhHHHHHHHHhCCCHHHHHH
Confidence 45568889999999999999999999986543 579999999999999999999
Q ss_pred HHHHHHHCCCCCChHHHHHHHHHHHHhcCCHHHHHHHHHHH------------hHHHhhhhcccccc
Q 047178 202 LFKGLEAFDRKPPEKSIVQRVADAYEVLGLLEEKERVLEKY------------KDLFTEKEKRSNKK 256 (287)
Q Consensus 202 Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~G~leeA~~ll~~m------------~~l~~~~~~~~~~~ 256 (287)
+|.+|.+.|+.||. +||+++|.+|++.|+++.|+++|..| +.++..|++.+++.
T Consensus 275 lf~~M~~~g~~Pd~-~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~ 340 (857)
T PLN03077 275 LFFTMRELSVDPDL-MTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWG 340 (857)
T ss_pred HHHHHHHcCCCCCh-hHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHH
Confidence 99999999999994 88999988888888888888887753 45566666655543
No 7
>PF13041 PPR_2: PPR repeat family
Probab=99.55 E-value=1.1e-14 Score=101.04 Aligned_cols=49 Identities=18% Similarity=0.234 Sum_probs=43.2
Q ss_pred ChhhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChHHHHHHHHHHHHh
Q 047178 179 PWQLCKSMIAIYYRNNMLERLIKLFKGLEAFDRKPPEKSIVQRVADAYEV 228 (287)
Q Consensus 179 ~~~tyNsmIsgY~k~G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k 228 (287)
+.++||+||++||+.|++++|+++|++|.+.|+.||. .||++||++||+
T Consensus 2 ~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~-~Ty~~li~~~~k 50 (50)
T PF13041_consen 2 DVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDS-YTYNILINGLCK 50 (50)
T ss_pred chHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHcC
Confidence 4568999999999999999999999999999999994 899999999885
No 8
>PF13041 PPR_2: PPR repeat family
Probab=99.49 E-value=4.8e-14 Score=97.85 Aligned_cols=50 Identities=16% Similarity=0.086 Sum_probs=47.4
Q ss_pred CChhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHH
Q 047178 142 STMGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYR 192 (287)
Q Consensus 142 pd~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k 192 (287)
||++|||+||++||+.|++++|.++|++|.+.|+. |+.+|||+||+||||
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~-P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIK-PDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHcC
Confidence 89999999999999999999999999999999985 677999999999986
No 9
>PF12854 PPR_1: PPR repeat
Probab=99.22 E-value=1.2e-11 Score=79.88 Aligned_cols=34 Identities=21% Similarity=0.290 Sum_probs=31.8
Q ss_pred CCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhh
Q 047178 138 KGQGSTMGTCGQLIRALDMDHRAEEAHKFWEKRI 171 (287)
Q Consensus 138 ~G~~pd~~TYnaLI~~y~K~G~leeA~~lF~eM~ 171 (287)
+|+.||++|||+||++|||.|++++|.++|++|.
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 5899999999999999999999999999999984
No 10
>PF12854 PPR_1: PPR repeat
Probab=98.88 E-value=2.6e-09 Score=68.99 Aligned_cols=32 Identities=16% Similarity=0.276 Sum_probs=19.5
Q ss_pred CCCCChHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 047178 210 DRKPPEKSIVQRVADAYEVLGLLEEKERVLEKY 242 (287)
Q Consensus 210 Gi~PD~~~Ty~sLI~a~~k~G~leeA~~ll~~m 242 (287)
|+.|| ++|||+||++||+.|++++|.++|++|
T Consensus 2 G~~Pd-~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPD-VVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCc-HhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 55666 366666666666666666666666655
No 11
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.87 E-value=3.4e-09 Score=66.38 Aligned_cols=33 Identities=18% Similarity=0.281 Sum_probs=31.8
Q ss_pred hHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCC
Q 047178 182 LCKSMIAIYYRNNMLERLIKLFKGLEAFDRKPP 214 (287)
Q Consensus 182 tyNsmIsgY~k~G~~eeA~~Lf~eM~~~Gi~PD 214 (287)
+||+||++|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 699999999999999999999999999999998
No 12
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=98.83 E-value=3.4e-07 Score=86.46 Aligned_cols=122 Identities=10% Similarity=-0.034 Sum_probs=65.8
Q ss_pred HHHccchhhHHHHHHHHHHCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHcCCHhH
Q 047178 119 LEKEQQWHRVVQVIKWMLSKGQGSTMGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNNMLER 198 (287)
Q Consensus 119 L~k~~~~~~A~qv~~~M~~~G~~pd~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~G~~ee 198 (287)
+.+.+++++|..+++.+.+.. ..+..++..|...|++.|+.++|.++|+++...+-. ....+|+.++.+|++.|++++
T Consensus 190 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~~l~~~~~~~g~~~~ 267 (389)
T PRK11788 190 ALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPE-YLSEVLPKLMECYQALGDEAE 267 (389)
T ss_pred HHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChh-hHHHHHHHHHHHHHHcCCHHH
Confidence 344555555555555555432 122334555556666666666666666666543210 011245566666666666666
Q ss_pred HHHHHHHHHHCCCCCChHHHHHHHHHHHHhcCCHHHHHHHHHHHhHH
Q 047178 199 LIKLFKGLEAFDRKPPEKSIVQRVADAYEVLGLLEEKERVLEKYKDL 245 (287)
Q Consensus 199 A~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~G~leeA~~ll~~m~~l 245 (287)
|..+|+++.+. .||. ..+..+...+.+.|++++|..+++++...
T Consensus 268 A~~~l~~~~~~--~p~~-~~~~~la~~~~~~g~~~~A~~~l~~~l~~ 311 (389)
T PRK11788 268 GLEFLRRALEE--YPGA-DLLLALAQLLEEQEGPEAAQALLREQLRR 311 (389)
T ss_pred HHHHHHHHHHh--CCCc-hHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 66666666554 3443 33455666666666666666666655443
No 13
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=98.80 E-value=3.6e-07 Score=86.33 Aligned_cols=130 Identities=9% Similarity=-0.017 Sum_probs=106.8
Q ss_pred HHHHHHHHHHHccchhhHHHHHHHHHHCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHH
Q 047178 111 SLKKALLALEKEQQWHRVVQVIKWMLSKGQGSTMGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIY 190 (287)
Q Consensus 111 s~~~ai~~L~k~~~~~~A~qv~~~M~~~G~~pd~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY 190 (287)
.+..+...+.+.|++++|.++++.+.+.+-.....+++.|..+|++.|+.++|..+|+++...+ ++...++.+...|
T Consensus 216 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~---p~~~~~~~la~~~ 292 (389)
T PRK11788 216 ASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY---PGADLLLALAQLL 292 (389)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCchHHHHHHHHH
Confidence 3445667788999999999999999875433334678999999999999999999999998754 2223468899999
Q ss_pred HHcCCHhHHHHHHHHHHHCCCCCChHHHHHHHHHHHHh---cCCHHHHHHHHHHHhHHH
Q 047178 191 YRNNMLERLIKLFKGLEAFDRKPPEKSIVQRVADAYEV---LGLLEEKERVLEKYKDLF 246 (287)
Q Consensus 191 ~k~G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k---~G~leeA~~ll~~m~~l~ 246 (287)
.+.|++++|..+|.++.+. .||. .+++.++..++. .|+.+++..++++|....
T Consensus 293 ~~~g~~~~A~~~l~~~l~~--~P~~-~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~ 348 (389)
T PRK11788 293 EEQEGPEAAQALLREQLRR--HPSL-RGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQ 348 (389)
T ss_pred HHhCCHHHHHHHHHHHHHh--CcCH-HHHHHHHHHhhhccCCccchhHHHHHHHHHHHH
Confidence 9999999999999998876 6995 789999988775 558999999998877644
No 14
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.58 E-value=5.6e-08 Score=59.72 Aligned_cols=30 Identities=17% Similarity=0.299 Sum_probs=22.9
Q ss_pred hHHHHHHHHHHcCCHhHHHHHHHHHHHCCC
Q 047178 182 LCKSMIAIYYRNNMLERLIKLFKGLEAFDR 211 (287)
Q Consensus 182 tyNsmIsgY~k~G~~eeA~~Lf~eM~~~Gi 211 (287)
+||+||++|++.|++++|.++|++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 577777777777777777777777777765
No 15
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=98.56 E-value=7.5e-06 Score=83.00 Aligned_cols=127 Identities=11% Similarity=0.053 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHccchhhHHHHHHHHHHCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHH
Q 047178 111 SLKKALLALEKEQQWHRVVQVIKWMLSKGQGSTMGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIY 190 (287)
Q Consensus 111 s~~~ai~~L~k~~~~~~A~qv~~~M~~~G~~pd~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY 190 (287)
.+..+...+.+.|++++|.+.|+.+.+.. ..+..+|+.+...|.+.|+ ++|..++++...... .+..++..+...|
T Consensus 772 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~--~~~~~~~~~~~~~ 847 (899)
T TIGR02917 772 LRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAP--NIPAILDTLGWLL 847 (899)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCC--CCcHHHHHHHHHH
Confidence 33444555667788888888888877653 3466778888888888888 778888887765432 1224577788888
Q ss_pred HHcCCHhHHHHHHHHHHHCCCCCChHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 047178 191 YRNNMLERLIKLFKGLEAFDRKPPEKSIVQRVADAYEVLGLLEEKERVLEKYK 243 (287)
Q Consensus 191 ~k~G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~G~leeA~~ll~~m~ 243 (287)
.+.|++++|.+.|+++.+.+.. | ..++..+..++++.|+.++|.+++++|.
T Consensus 848 ~~~g~~~~A~~~~~~a~~~~~~-~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 848 VEKGEADRALPLLRKAVNIAPE-A-AAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred HHcCCHHHHHHHHHHHHhhCCC-C-hHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 8899999999999998887653 5 3678888889999999999999888774
No 16
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.53 E-value=1.3e-06 Score=85.70 Aligned_cols=138 Identities=10% Similarity=0.050 Sum_probs=97.6
Q ss_pred HHHHHHHHHHHHccchhhHHHHHHHHHHCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHH
Q 047178 110 GSLKKALLALEKEQQWHRVVQVIKWMLSKGQGSTMGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAI 189 (287)
Q Consensus 110 ~s~~~ai~~L~k~~~~~~A~qv~~~M~~~G~~pd~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsg 189 (287)
-++..+|+++||.-+.++|.+++++-.......+..+||.||.+-.-.- ..++..+|....+. |+..|+|+++++
T Consensus 208 et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~K~Lv~EMisqkm~-Pnl~TfNalL~c 282 (625)
T KOG4422|consen 208 ETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----GKKLVAEMISQKMT-PNLFTFNALLSC 282 (625)
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----cHHHHHHHHHhhcC-CchHhHHHHHHH
Confidence 4667888888888888888888888776666677888888877643221 16777888776653 456788888888
Q ss_pred HHHcCCHhHH----HHHHHHHHHCCCCCChHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHHhhhhcccccc
Q 047178 190 YYRNNMLERL----IKLFKGLEAFDRKPPEKSIVQRVADAYEVLGLLEEKERVLEKYKDLFTEKEKRSNKK 256 (287)
Q Consensus 190 Y~k~G~~eeA----~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~G~leeA~~ll~~m~~l~~~~~~~~~~~ 256 (287)
..+.|+++.| ++++.||.+-|+.|. ..+|--+|.-+++.++-.+. .-.-.+++.+..+. |.++
T Consensus 283 ~akfg~F~~ar~aalqil~EmKeiGVePs-LsSyh~iik~f~re~dp~k~--as~~i~dI~N~ltG-K~fk 349 (625)
T KOG4422|consen 283 AAKFGKFEDARKAALQILGEMKEIGVEPS-LSSYHLIIKNFKRESDPQKV--ASSWINDIQNSLTG-KTFK 349 (625)
T ss_pred HHHhcchHHHHHHHHHHHHHHHHhCCCcc-hhhHHHHHHHhcccCCchhh--hHHHHHHHHHhhcc-Cccc
Confidence 8888887754 567788888888887 58888888888888765441 22234555555543 4443
No 17
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.47 E-value=2.6e-07 Score=58.02 Aligned_cols=33 Identities=12% Similarity=0.269 Sum_probs=28.3
Q ss_pred hhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCC
Q 047178 181 QLCKSMIAIYYRNNMLERLIKLFKGLEAFDRKP 213 (287)
Q Consensus 181 ~tyNsmIsgY~k~G~~eeA~~Lf~eM~~~Gi~P 213 (287)
.+||+||.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 368888888888888888888888888888887
No 18
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=98.44 E-value=2.3e-05 Score=79.49 Aligned_cols=126 Identities=11% Similarity=-0.045 Sum_probs=58.6
Q ss_pred HHHHHHHHHHccchhhHHHHHHHHHHCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHH
Q 047178 112 LKKALLALEKEQQWHRVVQVIKWMLSKGQGSTMGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYY 191 (287)
Q Consensus 112 ~~~ai~~L~k~~~~~~A~qv~~~M~~~G~~pd~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~ 191 (287)
+..+...+...|++++|++.+..+.+.. ..+...+..+...|.+.|+.++|..+|+++...+- ....+|+.++..|+
T Consensus 604 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~ 680 (899)
T TIGR02917 604 WLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELKP--DNTEAQIGLAQLLL 680 (899)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHH
Confidence 3334444445555555555555554432 12333444555555555555555555555443321 11234455555555
Q ss_pred HcCCHhHHHHHHHHHHHCCCCCChHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 047178 192 RNNMLERLIKLFKGLEAFDRKPPEKSIVQRVADAYEVLGLLEEKERVLEKY 242 (287)
Q Consensus 192 k~G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~G~leeA~~ll~~m 242 (287)
..|++++|..+++.|.+.+. +....+..+...|...|++++|...+.++
T Consensus 681 ~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~A~~~~~~~ 729 (899)
T TIGR02917 681 AAKRTESAKKIAKSLQKQHP--KAALGFELEGDLYLRQKDYPAAIQAYRKA 729 (899)
T ss_pred HcCCHHHHHHHHHHHHhhCc--CChHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 55555555555555544431 11233444445555555555555555443
No 19
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.40 E-value=3e-07 Score=56.42 Aligned_cols=31 Identities=19% Similarity=0.109 Sum_probs=29.0
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHhhhCCC
Q 047178 145 GTCGQLIRALDMDHRAEEAHKFWEKRIGIDL 175 (287)
Q Consensus 145 ~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~ 175 (287)
+|||+||++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 5899999999999999999999999998774
No 20
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.31 E-value=2.4e-05 Score=76.96 Aligned_cols=159 Identities=13% Similarity=0.088 Sum_probs=110.6
Q ss_pred HHHHHHHccCCCcchHHHHHHHHHHccCCCCHHHHHHHHHHHHHccchhhHHHHHHHHHHCCCCCChhHHHHHHHHHHHc
Q 047178 78 FLVNTLLDLKNSKEDVYGTLDAWVAWEQNFPVGSLKKALLALEKEQQWHRVVQVIKWMLSKGQGSTMGTCGQLIRALDMD 157 (287)
Q Consensus 78 ~Li~~l~~lg~~~~~v~~~Ld~~~~~~~~~~~~s~~~ai~~L~k~~~~~~A~qv~~~M~~~G~~pd~~TYnaLI~~y~K~ 157 (287)
.+|.+||+-... +..|..+.+..+....+...+++.+|..- .+-....+..+|.+..+.||.+|+|+|+.+.++.
T Consensus 212 ~mI~Gl~K~~~~-ERA~~L~kE~~~~k~kv~~~aFN~lI~~~----S~~~~K~Lv~EMisqkm~Pnl~TfNalL~c~akf 286 (625)
T KOG4422|consen 212 IMIAGLCKFSSL-ERARELYKEHRAAKGKVYREAFNGLIGAS----SYSVGKKLVAEMISQKMTPNLFTFNALLSCAAKF 286 (625)
T ss_pred HHHHHHHHHHhH-HHHHHHHHHHHHhhheeeHHhhhhhhhHH----HhhccHHHHHHHHHhhcCCchHhHHHHHHHHHHh
Confidence 388888887544 33344443332222222233444444332 2223367889999999999999999999999999
Q ss_pred CCHHHHHH----HHHHhhhCCCCCCChhhHHHHHHHHHHcCCHhH-HHHHHHHHH----HCCCC---CChHHHHHHHHHH
Q 047178 158 HRAEEAHK----FWEKRIGIDLHSVPWQLCKSMIAIYYRNNMLER-LIKLFKGLE----AFDRK---PPEKSIVQRVADA 225 (287)
Q Consensus 158 G~leeA~~----lF~eM~~~g~~sv~~~tyNsmIsgY~k~G~~ee-A~~Lf~eM~----~~Gi~---PD~~~Ty~sLI~a 225 (287)
|+++.|.. ++.+|.+-|+. |...+|.-+|..+||.+...+ |..+..+.. ..-++ |+....|.+-++.
T Consensus 287 g~F~~ar~aalqil~EmKeiGVe-PsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~I 365 (625)
T KOG4422|consen 287 GKFEDARKAALQILGEMKEIGVE-PSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSI 365 (625)
T ss_pred cchHHHHHHHHHHHHHHHHhCCC-cchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHH
Confidence 99988764 66678888885 455689999999999998855 444444443 33344 4444678899999
Q ss_pred HHhcCCHHHHHHHHHHH
Q 047178 226 YEVLGLLEEKERVLEKY 242 (287)
Q Consensus 226 ~~k~G~leeA~~ll~~m 242 (287)
|.++.+.+-|++|+.-+
T Consensus 366 c~~l~d~~LA~~v~~ll 382 (625)
T KOG4422|consen 366 CSSLRDLELAYQVHGLL 382 (625)
T ss_pred HHHhhhHHHHHHHHHHH
Confidence 99999999999998754
No 21
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.27 E-value=1.4e-06 Score=54.30 Aligned_cols=32 Identities=25% Similarity=0.292 Sum_probs=30.1
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCC
Q 047178 145 GTCGQLIRALDMDHRAEEAHKFWEKRIGIDLH 176 (287)
Q Consensus 145 ~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~ 176 (287)
+|||+||++|++.|++++|.++|++|...|+.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~ 32 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIE 32 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC
Confidence 48999999999999999999999999999874
No 22
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.14 E-value=0.00026 Score=59.83 Aligned_cols=162 Identities=14% Similarity=0.107 Sum_probs=114.5
Q ss_pred HHHHHHccCCCcchHHHHHHHHHHccCCCCHHHHHHHHHHHHHccchhhHHHHHHHHHHCCCCCChhHHHHHHHHHHHcC
Q 047178 79 LVNTLLDLKNSKEDVYGTLDAWVAWEQNFPVGSLKKALLALEKEQQWHRVVQVIKWMLSKGQGSTMGTCGQLIRALDMDH 158 (287)
Q Consensus 79 Li~~l~~lg~~~~~v~~~Ld~~~~~~~~~~~~s~~~ai~~L~k~~~~~~A~qv~~~M~~~G~~pd~~TYnaLI~~y~K~G 158 (287)
|...+...|+...+. ..+....... .-....+..+...+...|++++|.+.+....+.. ..+...+..+-..|...|
T Consensus 37 la~~~~~~~~~~~A~-~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~g 113 (234)
T TIGR02521 37 LALGYLEQGDLEVAK-ENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFLCQQG 113 (234)
T ss_pred HHHHHHHCCCHHHHH-HHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcc
Confidence 334455556654442 2233332221 1123344445566778899999999999887753 234567888889999999
Q ss_pred CHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChHHHHHHHHHHHHhcCCHHHHHHH
Q 047178 159 RAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNNMLERLIKLFKGLEAFDRKPPEKSIVQRVADAYEVLGLLEEKERV 238 (287)
Q Consensus 159 ~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~G~leeA~~l 238 (287)
+.++|.+.|++.......+.....|..+-..|...|++++|...|.+..... |+....+..+...+...|++++|...
T Consensus 114 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~ 191 (234)
T TIGR02521 114 KYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID--PQRPESLLELAELYYLRGQYKDARAY 191 (234)
T ss_pred cHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCChHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999987642211122456778888999999999999999988753 44345677888899999999999999
Q ss_pred HHHHhHH
Q 047178 239 LEKYKDL 245 (287)
Q Consensus 239 l~~m~~l 245 (287)
++++..+
T Consensus 192 ~~~~~~~ 198 (234)
T TIGR02521 192 LERYQQT 198 (234)
T ss_pred HHHHHHh
Confidence 9988776
No 23
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.13 E-value=4.1e-06 Score=52.42 Aligned_cols=33 Identities=15% Similarity=0.220 Sum_probs=30.6
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCC
Q 047178 144 MGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLH 176 (287)
Q Consensus 144 ~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~ 176 (287)
+.|||++|++|++.|+++.|.++|++|.+.|+.
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~ 33 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVK 33 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 469999999999999999999999999998873
No 24
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.05 E-value=0.00053 Score=57.95 Aligned_cols=131 Identities=10% Similarity=0.038 Sum_probs=99.9
Q ss_pred HHHHHHHHHHHccchhhHHHHHHHHHHCCCC-CChhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHH
Q 047178 111 SLKKALLALEKEQQWHRVVQVIKWMLSKGQG-STMGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAI 189 (287)
Q Consensus 111 s~~~ai~~L~k~~~~~~A~qv~~~M~~~G~~-pd~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsg 189 (287)
.+......+...|++++|.+.+....+.... .+...+..+-..|.+.|+.++|...|++....+- .....|..+...
T Consensus 101 ~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~la~~ 178 (234)
T TIGR02521 101 VLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDP--QRPESLLELAEL 178 (234)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc--CChHHHHHHHHH
Confidence 3444555677889999999999998764322 2345677788889999999999999999876542 223467788899
Q ss_pred HHHcCCHhHHHHHHHHHHHCCCCCChHHHHHHHHHHHHhcCCHHHHHHHHHHHhHH
Q 047178 190 YYRNNMLERLIKLFKGLEAFDRKPPEKSIVQRVADAYEVLGLLEEKERVLEKYKDL 245 (287)
Q Consensus 190 Y~k~G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~G~leeA~~ll~~m~~l 245 (287)
|.+.|++++|..+|++.... .|+....+..+...+...|+.++|..+.+.+..+
T Consensus 179 ~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 179 YYLRGQYKDARAYLERYQQT--YNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 99999999999999998876 3443466677788888999999999888776544
No 25
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.82 E-value=0.0002 Score=67.32 Aligned_cols=163 Identities=18% Similarity=0.161 Sum_probs=105.2
Q ss_pred CCcccHHHHHHHHHccCCCcchHHHHHHHHHHccCCCCHHHHH-HHHHHHHHccchhhHHHHHHHHHHCCCCCChhHHHH
Q 047178 71 PRKDKINFLVNTLLDLKNSKEDVYGTLDAWVAWEQNFPVGSLK-KALLALEKEQQWHRVVQVIKWMLSKGQGSTMGTCGQ 149 (287)
Q Consensus 71 s~~~~~~~Li~~l~~lg~~~~~v~~~Ld~~~~~~~~~~~~s~~-~ai~~L~k~~~~~~A~qv~~~M~~~G~~pd~~TYna 149 (287)
+..-++..++..++..+..++.+...|.+++.....-....+. .+-..+...|.+++|+++++. | .+......
T Consensus 63 ~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~----~--~~lE~~al 136 (290)
T PF04733_consen 63 SPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHK----G--GSLELLAL 136 (290)
T ss_dssp SCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTT----T--TCHHHHHH
T ss_pred ChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHc----c--CcccHHHH
Confidence 3445566677777776666666666777664433221121221 122235667888888776643 2 45566677
Q ss_pred HHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChHHHHHHHHHHHHhc
Q 047178 150 LIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNNMLERLIKLFKGLEAFDRKPPEKSIVQRVADAYEVL 229 (287)
Q Consensus 150 LI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~ 229 (287)
.|..|.+.+|+|.|.+.|..|.+.+-.++......+.|+.+.-.+.+.+|+-+|++|.+. +.++ ..+.|.+.-++...
T Consensus 137 ~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t-~~~lng~A~~~l~~ 214 (290)
T PF04733_consen 137 AVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGST-PKLLNGLAVCHLQL 214 (290)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--S-HHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCC-HHHHHHHHHHHHHh
Confidence 889999999999999999999865421111234566666555556799999999998654 5566 46778888888889
Q ss_pred CCHHHHHHHHHH
Q 047178 230 GLLEEKERVLEK 241 (287)
Q Consensus 230 G~leeA~~ll~~ 241 (287)
|++++|+.++.+
T Consensus 215 ~~~~eAe~~L~~ 226 (290)
T PF04733_consen 215 GHYEEAEELLEE 226 (290)
T ss_dssp T-HHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 999999998875
No 26
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.81 E-value=0.00025 Score=64.36 Aligned_cols=90 Identities=13% Similarity=0.151 Sum_probs=68.7
Q ss_pred HccchhhHHHHHHHHHHCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHcCCHhHHH
Q 047178 121 KEQQWHRVVQVIKWMLSKGQGSTMGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNNMLERLI 200 (287)
Q Consensus 121 k~~~~~~A~qv~~~M~~~G~~pd~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~G~~eeA~ 200 (287)
+.|.++-+...++.|.+.|+..|+.+|+.||+.+=|..-+ -..+|+.|--. | --+-+-|+
T Consensus 64 RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fv--p~n~fQ~~F~h----------------y--p~Qq~c~i 123 (228)
T PF06239_consen 64 RRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFV--PRNFFQAEFMH----------------Y--PRQQECAI 123 (228)
T ss_pred CcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcc--cccHHHHHhcc----------------C--cHHHHHHH
Confidence 4466666677788999999999999999999988763332 33445544321 1 12456689
Q ss_pred HHHHHHHHCCCCCChHHHHHHHHHHHHhcCC
Q 047178 201 KLFKGLEAFDRKPPEKSIVQRVADAYEVLGL 231 (287)
Q Consensus 201 ~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~G~ 231 (287)
+|+++|+..|+.||. -|+..|++.|++.+.
T Consensus 124 ~lL~qME~~gV~Pd~-Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 124 DLLEQMENNGVMPDK-ETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHHcCCCCcH-HHHHHHHHHhccccH
Confidence 999999999999994 999999999987775
No 27
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.79 E-value=0.00045 Score=68.40 Aligned_cols=98 Identities=10% Similarity=0.083 Sum_probs=55.4
Q ss_pred CChhHHHHHHHHHHHcCCHHHHHHHHHHhhhCC--CCCCChhhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChHHHH
Q 047178 142 STMGTCGQLIRALDMDHRAEEAHKFWEKRIGID--LHSVPWQLCKSMIAIYYRNNMLERLIKLFKGLEAFDRKPPEKSIV 219 (287)
Q Consensus 142 pd~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g--~~sv~~~tyNsmIsgY~k~G~~eeA~~Lf~eM~~~Gi~PD~~~Ty 219 (287)
-..+...++++.+...-.+|+|+.++.+..... ....|+ |..++|..|.+.|..++|++++..=...|+.||. +||
T Consensus 64 vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~-t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~-~s~ 141 (429)
T PF10037_consen 64 VSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPS-THHALVRQCLELGAEDELLELLKNRLQYGIFPDN-FSF 141 (429)
T ss_pred CcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCc-cHHHHHHHHHhcCCHHHHHHHHhChhhcccCCCh-hhH
Confidence 344555555666655556666666665554321 111222 3346666666666666666666666666666664 666
Q ss_pred HHHHHHHHhcCCHHHHHHHHHH
Q 047178 220 QRVADAYEVLGLLEEKERVLEK 241 (287)
Q Consensus 220 ~sLI~a~~k~G~leeA~~ll~~ 241 (287)
|.|++.+.+.|++..|.+|..+
T Consensus 142 n~Lmd~fl~~~~~~~A~~V~~~ 163 (429)
T PF10037_consen 142 NLLMDHFLKKGNYKSAAKVATE 163 (429)
T ss_pred HHHHHHHhhcccHHHHHHHHHH
Confidence 6666666666666666666543
No 28
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=97.77 E-value=0.003 Score=65.48 Aligned_cols=123 Identities=16% Similarity=0.133 Sum_probs=78.6
Q ss_pred HHHHHccchhhHHHHHHHHHHCCCCCChhHHHHHHHHHHHcCCHHH----HHHHHHHhhhCCCCCCChhhHHHHHHHHHH
Q 047178 117 LALEKEQQWHRVVQVIKWMLSKGQGSTMGTCGQLIRALDMDHRAEE----AHKFWEKRIGIDLHSVPWQLCKSMIAIYYR 192 (287)
Q Consensus 117 ~~L~k~~~~~~A~qv~~~M~~~G~~pd~~TYnaLI~~y~K~G~lee----A~~lF~eM~~~g~~sv~~~tyNsmIsgY~k 192 (287)
..|...|++++|++.+....+.. ..+...+..|-..|...|+.++ |...|++..... +.....+..+-..|.+
T Consensus 220 ~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~--P~~~~a~~~lg~~l~~ 296 (656)
T PRK15174 220 DTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN--SDNVRIVTLYADALIR 296 (656)
T ss_pred HHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHH
Confidence 34556666666666666665542 2234556666667777777764 677777766543 1223456777777777
Q ss_pred cCCHhHHHHHHHHHHHCCCCCChHHHHHHHHHHHHhcCCHHHHHHHHHHHhH
Q 047178 193 NNMLERLIKLFKGLEAFDRKPPEKSIVQRVADAYEVLGLLEEKERVLEKYKD 244 (287)
Q Consensus 193 ~G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~G~leeA~~ll~~m~~ 244 (287)
.|++++|+..|++.... .|+....+..+..+|...|++++|...++.+..
T Consensus 297 ~g~~~eA~~~l~~al~l--~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~ 346 (656)
T PRK15174 297 TGQNEKAIPLLQQSLAT--HPDLPYVRAMYARALRQVGQYTAASDEFVQLAR 346 (656)
T ss_pred CCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 77777777777776654 455445556666777777888877777766554
No 29
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=97.73 E-value=0.0045 Score=63.23 Aligned_cols=130 Identities=10% Similarity=-0.012 Sum_probs=103.7
Q ss_pred HHHHHHHHHHHccchhhHHHHHHHHHHCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHH
Q 047178 111 SLKKALLALEKEQQWHRVVQVIKWMLSKGQGSTMGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIY 190 (287)
Q Consensus 111 s~~~ai~~L~k~~~~~~A~qv~~~M~~~G~~pd~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY 190 (287)
.+...-..+...|++++|+..++..++.. ..+..+|..+-..|...|+.++|...|++....+- .....|..+-..|
T Consensus 367 ~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P--~~~~~~~~la~~~ 443 (615)
T TIGR00990 367 SYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDP--DFIFSHIQLGVTQ 443 (615)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCc--cCHHHHHHHHHHH
Confidence 34445556678899999999999887652 23567888899999999999999999999887542 2234577788889
Q ss_pred HHcCCHhHHHHHHHHHHHCCCCCChHHHHHHHHHHHHhcCCHHHHHHHHHHHhHH
Q 047178 191 YRNNMLERLIKLFKGLEAFDRKPPEKSIVQRVADAYEVLGLLEEKERVLEKYKDL 245 (287)
Q Consensus 191 ~k~G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~G~leeA~~ll~~m~~l 245 (287)
.+.|++++|+..|++.... .|+....|+.+-..+...|++++|...+++...+
T Consensus 444 ~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l 496 (615)
T TIGR00990 444 YKEGSIASSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL 496 (615)
T ss_pred HHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 9999999999999998764 4665567888889999999999999998876655
No 30
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=97.67 E-value=0.0053 Score=63.67 Aligned_cols=130 Identities=14% Similarity=0.008 Sum_probs=96.9
Q ss_pred HHHHHHHHHHccchhh----HHHHHHHHHHCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHH
Q 047178 112 LKKALLALEKEQQWHR----VVQVIKWMLSKGQGSTMGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMI 187 (287)
Q Consensus 112 ~~~ai~~L~k~~~~~~----A~qv~~~M~~~G~~pd~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmI 187 (287)
...+-..+...|++++ |...++...+. .+.+..++..+-..|.+.|+.++|...|++....+- .+...+..+-
T Consensus 249 ~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l-~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P--~~~~a~~~La 325 (656)
T PRK15174 249 RRSLGLAYYQSGRSREAKLQAAEHWRHALQF-NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHP--DLPYVRAMYA 325 (656)
T ss_pred HHHHHHHHHHcCCchhhHHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--CCHHHHHHHH
Confidence 3344455677888875 78888887764 223566788899999999999999999999877542 2234567788
Q ss_pred HHHHHcCCHhHHHHHHHHHHHCCCCCChHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHH
Q 047178 188 AIYYRNNMLERLIKLFKGLEAFDRKPPEKSIVQRVADAYEVLGLLEEKERVLEKYKDLF 246 (287)
Q Consensus 188 sgY~k~G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~G~leeA~~ll~~m~~l~ 246 (287)
..|.+.|++++|+..|+.+... .|+....+..+..++...|+.++|...+++...+-
T Consensus 326 ~~l~~~G~~~eA~~~l~~al~~--~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 326 RALRQVGQYTAASDEFVQLARE--KGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred HHHHHCCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 8999999999999999988875 46542334445667889999999999988876653
No 31
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.64 E-value=0.0028 Score=62.31 Aligned_cols=126 Identities=15% Similarity=0.158 Sum_probs=101.7
Q ss_pred HHHHHHHHHHccchhhHHHHHHHHHHCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHH
Q 047178 112 LKKALLALEKEQQWHRVVQVIKWMLSKGQGSTMGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYY 191 (287)
Q Consensus 112 ~~~ai~~L~k~~~~~~A~qv~~~M~~~G~~pd~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~ 191 (287)
+..++..+...++++.|+++|+.+.+.. |++ .-.|...|-..++-.+|.++.++.....- .+....+.-..-|.
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~p--~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKENP--QDSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHH
Confidence 3456777777889999999999998764 553 44578888888999999999999886532 23234555556688
Q ss_pred HcCCHhHHHHHHHHHHHCCCCCChHHHHHHHHHHHHhcCCHHHHHHHHHHHhHH
Q 047178 192 RNNMLERLIKLFKGLEAFDRKPPEKSIVQRVADAYEVLGLLEEKERVLEKYKDL 245 (287)
Q Consensus 192 k~G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~G~leeA~~ll~~m~~l 245 (287)
+.++++.|+++.+++.. +.|++..+|..|..+|...|++++|+..++.++..
T Consensus 246 ~k~~~~lAL~iAk~av~--lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~ 297 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVE--LSPSEFETWYQLAECYIQLGDFENALLALNSCPML 297 (395)
T ss_pred hcCCHHHHHHHHHHHHH--hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCC
Confidence 99999999999999886 47888789999999999999999999999987755
No 32
>PRK12370 invasion protein regulator; Provisional
Probab=97.63 E-value=0.0036 Score=63.50 Aligned_cols=122 Identities=11% Similarity=-0.023 Sum_probs=92.1
Q ss_pred HHHHccchhhHHHHHHHHHHCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHcCCHh
Q 047178 118 ALEKEQQWHRVVQVIKWMLSKGQGSTMGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNNMLE 197 (287)
Q Consensus 118 ~L~k~~~~~~A~qv~~~M~~~G~~pd~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~G~~e 197 (287)
.+...|++++|...++..++.. +.+...|..+-..|...|+.++|...|++..+.+-. +...+..+...+...|+++
T Consensus 347 ~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~--~~~~~~~~~~~~~~~g~~e 423 (553)
T PRK12370 347 INTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT--RAAAGITKLWITYYHTGID 423 (553)
T ss_pred HHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC--ChhhHHHHHHHHHhccCHH
Confidence 4567889999999999988753 224557888888899999999999999999876521 2122334455677899999
Q ss_pred HHHHHHHHHHHCCCCCChHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 047178 198 RLIKLFKGLEAFDRKPPEKSIVQRVADAYEVLGLLEEKERVLEKYK 243 (287)
Q Consensus 198 eA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~G~leeA~~ll~~m~ 243 (287)
+|...+.+..... .|+....+..+-.+|...|++++|...+.+..
T Consensus 424 eA~~~~~~~l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~ 468 (553)
T PRK12370 424 DAIRLGDELRSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEIS 468 (553)
T ss_pred HHHHHHHHHHHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhh
Confidence 9999999987653 35433446667778889999999999988644
No 33
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=97.61 E-value=0.00011 Score=77.37 Aligned_cols=109 Identities=17% Similarity=0.058 Sum_probs=87.4
Q ss_pred HHHHHHHHCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHcCCHhHHHHHHHHHHHC
Q 047178 130 QVIKWMLSKGQGSTMGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNNMLERLIKLFKGLEAF 209 (287)
Q Consensus 130 qv~~~M~~~G~~pd~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~G~~eeA~~Lf~eM~~~ 209 (287)
.++..|...|+.|+.+||..||.-||..|+++-|- +|.-|.-+++ ++....|+.++.+..++|+.+.|.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksL-pv~e~vf~~lv~sh~~And~Enpk--------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSL-PVREGVFRGLVASHKEANDAENPK--------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccc-cccchhHHHHHhcccccccccCCC---------
Confidence 45667888999999999999999999999999999 9999987776 345567999999999999998886
Q ss_pred CCCCChHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHHhhhhcc
Q 047178 210 DRKPPEKSIVQRVADAYEVLGLLEEKERVLEKYKDLFTEKEKR 252 (287)
Q Consensus 210 Gi~PD~~~Ty~sLI~a~~k~G~leeA~~ll~~m~~l~~~~~~~ 252 (287)
.|- .-||+.|+.+|...|++..-+.+-..+..+...|.+.
T Consensus 80 --ep~-aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~ 119 (1088)
T KOG4318|consen 80 --EPL-ADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDH 119 (1088)
T ss_pred --CCc-hhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhh
Confidence 344 3569999999999999876333333366666666643
No 34
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.59 E-value=0.00068 Score=67.16 Aligned_cols=135 Identities=10% Similarity=0.016 Sum_probs=109.3
Q ss_pred HHHHHHHHHHccCCCCHHHHHHHHHHHHHccchhhHHHHHHHHHHC--CCCCChhHHHHHHHHHHHcCCHHHHHHHHHHh
Q 047178 93 VYGTLDAWVAWEQNFPVGSLKKALLALEKEQQWHRVVQVIKWMLSK--GQGSTMGTCGQLIRALDMDHRAEEAHKFWEKR 170 (287)
Q Consensus 93 v~~~Ld~~~~~~~~~~~~s~~~ai~~L~k~~~~~~A~qv~~~M~~~--G~~pd~~TYnaLI~~y~K~G~leeA~~lF~eM 170 (287)
.|..|+.-.......+..++...++......+.+.+..++...... ....-..|..++|..|-+.|..++|.++...=
T Consensus 50 ~~~~l~~k~~~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~ 129 (429)
T PF10037_consen 50 LYSELDKKFERKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNR 129 (429)
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhCh
Confidence 6667777655556677788889988888888888888777766543 11122346679999999999999999999988
Q ss_pred hhCCCCCCChhhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChHHHHHHHHHHHHhc
Q 047178 171 IGIDLHSVPWQLCKSMIAIYYRNNMLERLIKLFKGLEAFDRKPPEKSIVQRVADAYEVL 229 (287)
Q Consensus 171 ~~~g~~sv~~~tyNsmIsgY~k~G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~ 229 (287)
...|+. ++.++||.||+.|.+.|.+..|.+++.+|...+...+. .|+.--+.+|.+.
T Consensus 130 ~~yGiF-~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~-~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 130 LQYGIF-PDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNP-STQALALYSCYKY 186 (429)
T ss_pred hhcccC-CChhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCc-hHHHHHHHHHHHh
Confidence 889986 67799999999999999999999999999999888775 7777777676665
No 35
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=97.56 E-value=0.00061 Score=62.31 Aligned_cols=124 Identities=15% Similarity=0.083 Sum_probs=56.5
Q ss_pred HHHHHHHHccchhhHHHHHHHHHHCC-CCCChhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHH
Q 047178 114 KALLALEKEQQWHRVVQVIKWMLSKG-QGSTMGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYR 192 (287)
Q Consensus 114 ~ai~~L~k~~~~~~A~qv~~~M~~~G-~~pd~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k 192 (287)
.++..+...++++++.++++...... ...+...|..+-..+.+.|+.++|.++|++..+.+- .+....+.++..+..
T Consensus 115 ~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P--~~~~~~~~l~~~li~ 192 (280)
T PF13429_consen 115 SALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDP--DDPDARNALAWLLID 192 (280)
T ss_dssp ---H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-T--T-HHHHHHHHHHHCT
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHH
Confidence 34444555555555555555544321 223444455555555556666666666555554321 112234555555555
Q ss_pred cCCHhHHHHHHHHHHHCCCCCChHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 047178 193 NNMLERLIKLFKGLEAFDRKPPEKSIVQRVADAYEVLGLLEEKERVLEK 241 (287)
Q Consensus 193 ~G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~G~leeA~~ll~~ 241 (287)
.|+.++|.+++....... ..| ...+..+..+|..+|+.++|...+++
T Consensus 193 ~~~~~~~~~~l~~~~~~~-~~~-~~~~~~la~~~~~lg~~~~Al~~~~~ 239 (280)
T PF13429_consen 193 MGDYDEAREALKRLLKAA-PDD-PDLWDALAAAYLQLGRYEEALEYLEK 239 (280)
T ss_dssp TCHHHHHHHHHHHHHHH--HTS-CCHCHHHHHHHHHHT-HHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHC-cCH-HHHHHHHHHHhccccccccccccccc
Confidence 555555555555544432 112 13344555555555555555555544
No 36
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.44 E-value=0.0036 Score=44.03 Aligned_cols=93 Identities=22% Similarity=0.199 Sum_probs=62.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChHHHHHHHHHHH
Q 047178 147 CGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNNMLERLIKLFKGLEAFDRKPPEKSIVQRVADAY 226 (287)
Q Consensus 147 YnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~ 226 (287)
|..+...|...|+.++|..+|++.....- .+...|..+-..|...|++++|.++|....... |+...++..+...+
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~ 78 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDP--DNADAYYNLAAAYYKLGKYEEALEDYEKALELD--PDNAKAYYNLGLAY 78 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCC--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CcchhHHHHHHHHH
Confidence 44566667777888888888887765431 222456667777778888888888887776654 22224566677777
Q ss_pred HhcCCHHHHHHHHHHHh
Q 047178 227 EVLGLLEEKERVLEKYK 243 (287)
Q Consensus 227 ~k~G~leeA~~ll~~m~ 243 (287)
...|+.++|...+.+..
T Consensus 79 ~~~~~~~~a~~~~~~~~ 95 (100)
T cd00189 79 YKLGKYEEALEAYEKAL 95 (100)
T ss_pred HHHHhHHHHHHHHHHHH
Confidence 78888888877776543
No 37
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=97.36 E-value=0.001 Score=60.85 Aligned_cols=125 Identities=14% Similarity=0.063 Sum_probs=85.9
Q ss_pred HHHHHHHHHHccchhhHHHHHHHHHHCCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHH
Q 047178 112 LKKALLALEKEQQWHRVVQVIKWMLSKGQGS-TMGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIY 190 (287)
Q Consensus 112 ~~~ai~~L~k~~~~~~A~qv~~~M~~~G~~p-d~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY 190 (287)
+...-..+.+.|+.++|+.+++..++. .| |....+.|+..+...|+.++|.+++.......- .+...|..+-.+|
T Consensus 149 ~~~~a~~~~~~G~~~~A~~~~~~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~--~~~~~~~~la~~~ 224 (280)
T PF13429_consen 149 WLALAEIYEQLGDPDKALRDYRKALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAP--DDPDLWDALAAAY 224 (280)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-H--TSCCHCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCc--CHHHHHHHHHHHh
Confidence 444455678899999999999998874 45 466788999999999999999999988765431 1224578899999
Q ss_pred HHcCCHhHHHHHHHHHHHCCCCCChHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 047178 191 YRNNMLERLIKLFKGLEAFDRKPPEKSIVQRVADAYEVLGLLEEKERVLEKY 242 (287)
Q Consensus 191 ~k~G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~G~leeA~~ll~~m 242 (287)
...|+.++|+.+|.+.... .|++..+...+.+++...|+.++|..+..+.
T Consensus 225 ~~lg~~~~Al~~~~~~~~~--~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 225 LQLGRYEEALEYLEKALKL--NPDDPLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp HHHT-HHHHHHHHHHHHHH--STT-HHHHHHHHHHHT---------------
T ss_pred ccccccccccccccccccc--ccccccccccccccccccccccccccccccc
Confidence 9999999999999998763 4655688889999999999999999987654
No 38
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=97.33 E-value=0.022 Score=62.07 Aligned_cols=121 Identities=7% Similarity=-0.014 Sum_probs=97.1
Q ss_pred HHHccchhhHHHHHHHHHHCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHcCCHhH
Q 047178 119 LEKEQQWHRVVQVIKWMLSKGQGSTMGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNNMLER 198 (287)
Q Consensus 119 L~k~~~~~~A~qv~~~M~~~G~~pd~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~G~~ee 198 (287)
+...|++++|+..+...++ +.|+...|..+-..|.+.|+.++|...|++....+- .....++.+-..|...|++++
T Consensus 586 l~~~Gr~~eAl~~~~~AL~--l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~P--d~~~a~~nLG~aL~~~G~~ee 661 (987)
T PRK09782 586 RYIPGQPELALNDLTRSLN--IAPSANAYVARATIYRQRHNVPAAVSDLRAALELEP--NNSNYQAALGYALWDSGDIAQ 661 (987)
T ss_pred HHhCCCHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHCCCHHH
Confidence 3445889999888888765 346777888899999999999999999999887642 223467888889999999999
Q ss_pred HHHHHHHHHHCCCCCChHHHHHHHHHHHHhcCCHHHHHHHHHHHhHH
Q 047178 199 LIKLFKGLEAFDRKPPEKSIVQRVADAYEVLGLLEEKERVLEKYKDL 245 (287)
Q Consensus 199 A~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~G~leeA~~ll~~m~~l 245 (287)
|+.+|..-.+. .|+....+..+-.++...|++++|+..+++...+
T Consensus 662 Ai~~l~~AL~l--~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l 706 (987)
T PRK09782 662 SREMLERAHKG--LPDDPALIRQLAYVNQRLDDMAATQHYARLVIDD 706 (987)
T ss_pred HHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 99999987764 5766677788888999999999999888865433
No 39
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=97.33 E-value=0.014 Score=59.73 Aligned_cols=125 Identities=5% Similarity=-0.088 Sum_probs=100.1
Q ss_pred HHHHHHHHccchhhHHHHHHHHHHCCCCCC-hhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHH
Q 047178 114 KALLALEKEQQWHRVVQVIKWMLSKGQGST-MGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYR 192 (287)
Q Consensus 114 ~ai~~L~k~~~~~~A~qv~~~M~~~G~~pd-~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k 192 (287)
.+-..+...|++++|+..++..++. .|+ ..+|..+-..|...|+.++|...|++....+- .....|..+-..|..
T Consensus 336 ~lg~~~~~~g~~~eA~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p--~~~~~~~~lg~~~~~ 411 (615)
T TIGR00990 336 LRGTFKCLKGKHLEALADLSKSIEL--DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNS--EDPDIYYHRAQLHFI 411 (615)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHH
Confidence 3334456789999999999887764 454 45788888899999999999999999877542 223468888899999
Q ss_pred cCCHhHHHHHHHHHHHCCCCCChHHHHHHHHHHHHhcCCHHHHHHHHHHHhH
Q 047178 193 NNMLERLIKLFKGLEAFDRKPPEKSIVQRVADAYEVLGLLEEKERVLEKYKD 244 (287)
Q Consensus 193 ~G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~G~leeA~~ll~~m~~ 244 (287)
.|++++|+..|++.... .|+....+..+...|.+.|++++|...+++...
T Consensus 412 ~g~~~~A~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~ 461 (615)
T TIGR00990 412 KGEFAQAGKDYQKSIDL--DPDFIFSHIQLGVTQYKEGSIASSMATFRRCKK 461 (615)
T ss_pred cCCHHHHHHHHHHHHHc--CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 99999999999988764 576556677778889999999999999987654
No 40
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.21 E-value=0.0091 Score=47.98 Aligned_cols=95 Identities=19% Similarity=0.129 Sum_probs=51.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChHHHHHHHHHHH
Q 047178 147 CGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNNMLERLIKLFKGLEAFDRKPPEKSIVQRVADAY 226 (287)
Q Consensus 147 YnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~ 226 (287)
...+...|.+.|+.++|.+.|++....+- .+...|..+-..|.+.|++++|...|......+ |+...++..+-..|
T Consensus 20 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p--~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~la~~~ 95 (135)
T TIGR02552 20 IYALAYNLYQQGRYDEALKLFQLLAAYDP--YNSRYWLGLAACCQMLKEYEEAIDAYALAAALD--PDDPRPYFHAAECL 95 (135)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCChHHHHHHHHHH
Confidence 44445555566666666666666554331 122345555556666666666666666554443 32223344444556
Q ss_pred HhcCCHHHHHHHHHHHhHH
Q 047178 227 EVLGLLEEKERVLEKYKDL 245 (287)
Q Consensus 227 ~k~G~leeA~~ll~~m~~l 245 (287)
...|+.++|...++....+
T Consensus 96 ~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 96 LALGEPESALKALDLAIEI 114 (135)
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 6666666666666554443
No 41
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=97.20 E-value=0.0095 Score=49.86 Aligned_cols=89 Identities=12% Similarity=0.004 Sum_probs=49.3
Q ss_pred HHHHHccchhhHHHHHHHHHHCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHcCCH
Q 047178 117 LALEKEQQWHRVVQVIKWMLSKGQGSTMGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNNML 196 (287)
Q Consensus 117 ~~L~k~~~~~~A~qv~~~M~~~G~~pd~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~G~~ 196 (287)
..+...|++++|+..|.+..... ..+..+|..+-..+.+.|++++|...|++....+- .+...|..+=.+|.+.|++
T Consensus 32 ~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p--~~~~a~~~lg~~l~~~g~~ 108 (144)
T PRK15359 32 YASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA--SHPEPVYQTGVCLKMMGEP 108 (144)
T ss_pred HHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC--CCcHHHHHHHHHHHHcCCH
Confidence 34455566666666666655432 12444555566666666666666666666655431 1223455555566666666
Q ss_pred hHHHHHHHHHHH
Q 047178 197 ERLIKLFKGLEA 208 (287)
Q Consensus 197 eeA~~Lf~eM~~ 208 (287)
++|+..|+.-..
T Consensus 109 ~eAi~~~~~Al~ 120 (144)
T PRK15359 109 GLAREAFQTAIK 120 (144)
T ss_pred HHHHHHHHHHHH
Confidence 666666666544
No 42
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=97.18 E-value=0.046 Score=57.69 Aligned_cols=131 Identities=8% Similarity=-0.051 Sum_probs=99.7
Q ss_pred HHHHHHHHHccchhhHHHHHHHHHHCC-----------CCCC---hhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCC
Q 047178 113 KKALLALEKEQQWHRVVQVIKWMLSKG-----------QGST---MGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSV 178 (287)
Q Consensus 113 ~~ai~~L~k~~~~~~A~qv~~~M~~~G-----------~~pd---~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv 178 (287)
..+...+...+++++|.+++..+.+.. -.|+ ...+..+...+...|+.++|.++|+++....- -
T Consensus 314 ~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P--~ 391 (765)
T PRK10049 314 ADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAP--G 391 (765)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--C
Confidence 344556778899999999999887642 1122 12455677788899999999999999987531 2
Q ss_pred ChhhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHHh
Q 047178 179 PWQLCKSMIAIYYRNNMLERLIKLFKGLEAFDRKPPEKSIVQRVADAYEVLGLLEEKERVLEKYKDLFT 247 (287)
Q Consensus 179 ~~~tyNsmIsgY~k~G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~G~leeA~~ll~~m~~l~~ 247 (287)
....+..+...|...|++++|++++++... ..||....+-.....+...|++++|+.+++++...+-
T Consensus 392 n~~l~~~lA~l~~~~g~~~~A~~~l~~al~--l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~P 458 (765)
T PRK10049 392 NQGLRIDYASVLQARGWPRAAENELKKAEV--LEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREP 458 (765)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--hCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC
Confidence 234688899999999999999999998776 4588655666666688889999999999988776543
No 43
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.12 E-value=0.008 Score=49.54 Aligned_cols=87 Identities=8% Similarity=0.127 Sum_probs=60.0
Q ss_pred HHHHHHHHHccchhhHHHHHHHHHHCCC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHH
Q 047178 113 KKALLALEKEQQWHRVVQVIKWMLSKGQ-GSTMGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYY 191 (287)
Q Consensus 113 ~~ai~~L~k~~~~~~A~qv~~~M~~~G~-~pd~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~ 191 (287)
...|..+...+.+..+.-++..+++.|+ -|++.+||.++.+.++..-=. ..
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~----------------------------~~ 80 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDS----------------------------ED 80 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccc----------------------------hh
Confidence 3444445555777777778888777787 778888888777766432110 00
Q ss_pred HcCCHhHHHHHHHHHHHCCCCCChHHHHHHHHHHHHh
Q 047178 192 RNNMLERLIKLFKGLEAFDRKPPEKSIVQRVADAYEV 228 (287)
Q Consensus 192 k~G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k 228 (287)
-.+++-+++.++++|...+++|+. .||++||.++.+
T Consensus 81 ie~kl~~LLtvYqDiL~~~lKP~~-etYnivl~~Llk 116 (120)
T PF08579_consen 81 IENKLTNLLTVYQDILSNKLKPND-ETYNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHHHHHHHHHhccCCcH-HHHHHHHHHHHH
Confidence 112233567888999999999995 999999988765
No 44
>PRK14574 hmsH outer membrane protein; Provisional
Probab=97.02 E-value=0.041 Score=58.87 Aligned_cols=163 Identities=11% Similarity=0.073 Sum_probs=114.1
Q ss_pred HHHHHHHccCCCcchHHHHHHHHHHccCCCCHHHHHHHHHHHHHccchhhHHHHHHHHHHCCCCCChhHHHHHHHHHHHc
Q 047178 78 FLVNTLLDLKNSKEDVYGTLDAWVAWEQNFPVGSLKKALLALEKEQQWHRVVQVIKWMLSKGQGSTMGTCGQLIRALDMD 157 (287)
Q Consensus 78 ~Li~~l~~lg~~~~~v~~~Ld~~~~~~~~~~~~s~~~ai~~L~k~~~~~~A~qv~~~M~~~G~~pd~~TYnaLI~~y~K~ 157 (287)
.|+..+...|+...++ ..++..+ -....+...+..+...+...|++++|+++++.+.+..- -|...+..|+..|...
T Consensus 73 dll~l~~~~G~~~~A~-~~~eka~-~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP-~n~~~l~gLa~~y~~~ 149 (822)
T PRK14574 73 DWLQIAGWAGRDQEVI-DVYERYQ-SSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKDP-TNPDLISGMIMTQADA 149 (822)
T ss_pred HHHHHHHHcCCcHHHH-HHHHHhc-cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHhhc
Confidence 4555555556554432 3333333 22223333444445567778999999999999987532 2355677888999999
Q ss_pred CCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChHHHHHHHHHHHHhcCCHHHHHH
Q 047178 158 HRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNNMLERLIKLFKGLEAFDRKPPEKSIVQRVADAYEVLGLLEEKER 237 (287)
Q Consensus 158 G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~G~leeA~~ 237 (287)
|+.++|.+.+.+....+ +....|-.++..|...+...+|++.+++|.+.. |+..-.+.-++.++.+.|...-|.+
T Consensus 150 ~q~~eAl~~l~~l~~~d---p~~~~~l~layL~~~~~~~~~AL~~~ekll~~~--P~n~e~~~~~~~~l~~~~~~~~a~~ 224 (822)
T PRK14574 150 GRGGVVLKQATELAERD---PTVQNYMTLSYLNRATDRNYDALQASSEAVRLA--PTSEEVLKNHLEILQRNRIVEPALR 224 (822)
T ss_pred CCHHHHHHHHHHhcccC---cchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCcHHHHH
Confidence 99999999999998764 233445444444444566667999999999874 7655667888899999999999999
Q ss_pred HHHHHhHHHhh
Q 047178 238 VLEKYKDLFTE 248 (287)
Q Consensus 238 ll~~m~~l~~~ 248 (287)
+..+.+.+|+.
T Consensus 225 l~~~~p~~f~~ 235 (822)
T PRK14574 225 LAKENPNLVSA 235 (822)
T ss_pred HHHhCccccCH
Confidence 99998877753
No 45
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.02 E-value=0.02 Score=40.11 Aligned_cols=91 Identities=14% Similarity=0.060 Sum_probs=71.3
Q ss_pred HHHHHHHccchhhHHHHHHHHHHCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHcC
Q 047178 115 ALLALEKEQQWHRVVQVIKWMLSKGQGSTMGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNN 194 (287)
Q Consensus 115 ai~~L~k~~~~~~A~qv~~~M~~~G~~pd~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~G 194 (287)
....+...+++++|++++....+.. ..+..++..+-..|...|+.++|.+.|++...... ....+|..+...|...|
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 6 LGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDP--DNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--cchhHHHHHHHHHHHHH
Confidence 3445567889999999999887653 23446778888889999999999999999876542 22246788889999999
Q ss_pred CHhHHHHHHHHHHH
Q 047178 195 MLERLIKLFKGLEA 208 (287)
Q Consensus 195 ~~eeA~~Lf~eM~~ 208 (287)
++++|...|.....
T Consensus 83 ~~~~a~~~~~~~~~ 96 (100)
T cd00189 83 KYEEALEAYEKALE 96 (100)
T ss_pred hHHHHHHHHHHHHc
Confidence 99999999988664
No 46
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=97.01 E-value=0.04 Score=58.12 Aligned_cols=160 Identities=12% Similarity=0.051 Sum_probs=118.1
Q ss_pred cHHHHHHHHHccCCCcchHHHHHHHHHHcc--CCCCHHHHHHHHHHHHHccchhhHHHHHHHHHHCCCCCChhHHHHHHH
Q 047178 75 KINFLVNTLLDLKNSKEDVYGTLDAWVAWE--QNFPVGSLKKALLALEKEQQWHRVVQVIKWMLSKGQGSTMGTCGQLIR 152 (287)
Q Consensus 75 ~~~~Li~~l~~lg~~~~~v~~~Ld~~~~~~--~~~~~~s~~~ai~~L~k~~~~~~A~qv~~~M~~~G~~pd~~TYnaLI~ 152 (287)
+..+...-..-.|+..+++ ..|.... ...+...+..+-..+...+++.+|.+++...++. -+.+...+..+..
T Consensus 17 ~~~d~~~ia~~~g~~~~A~----~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~-~P~~~~a~~~la~ 91 (765)
T PRK10049 17 QIADWLQIALWAGQDAEVI----TVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL-EPQNDDYQRGLIL 91 (765)
T ss_pred HHHHHHHHHHHcCCHHHHH----HHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHH
Confidence 3455555666667765543 4443322 3333444666777789999999999999997764 2234556778889
Q ss_pred HHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChHHHHHHHHHHHHhcCCH
Q 047178 153 ALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNNMLERLIKLFKGLEAFDRKPPEKSIVQRVADAYEVLGLL 232 (287)
Q Consensus 153 ~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~G~l 232 (287)
.+...|+.++|...+++.....- .... |..+-..|.+.|++++|+..|++..+. .|+....+..+..++...|..
T Consensus 92 ~l~~~g~~~eA~~~l~~~l~~~P--~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~--~P~~~~~~~~la~~l~~~~~~ 166 (765)
T PRK10049 92 TLADAGQYDEALVKAKQLVSGAP--DKAN-LLALAYVYKRAGRHWDELRAMTQALPR--APQTQQYPTEYVQALRNNRLS 166 (765)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCC--CCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCh
Confidence 99999999999999999987642 2223 788888999999999999999999875 566545566777888889999
Q ss_pred HHHHHHHHHHhH
Q 047178 233 EEKERVLEKYKD 244 (287)
Q Consensus 233 eeA~~ll~~m~~ 244 (287)
++|...++....
T Consensus 167 e~Al~~l~~~~~ 178 (765)
T PRK10049 167 APALGAIDDANL 178 (765)
T ss_pred HHHHHHHHhCCC
Confidence 999998876554
No 47
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=96.91 E-value=0.041 Score=45.65 Aligned_cols=122 Identities=16% Similarity=0.084 Sum_probs=83.8
Q ss_pred HHHHHHHHccchhhHHHHHHHHHHCCCCCChhH-HH--HHHHHHHHcCCHHHHHHHHHHhhhCCCCCCC--hhhHHHHHH
Q 047178 114 KALLALEKEQQWHRVVQVIKWMLSKGQGSTMGT-CG--QLIRALDMDHRAEEAHKFWEKRIGIDLHSVP--WQLCKSMIA 188 (287)
Q Consensus 114 ~ai~~L~k~~~~~~A~qv~~~M~~~G~~pd~~T-Yn--aLI~~y~K~G~leeA~~lF~eM~~~g~~sv~--~~tyNsmIs 188 (287)
.++..+ ..+.+..+...++.+.+..- .+... .- .+-..+...|++++|...|+....... .++ ....-.|-.
T Consensus 17 ~~~~~~-~~~~~~~~~~~~~~l~~~~~-~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~-d~~l~~~a~l~LA~ 93 (145)
T PF09976_consen 17 QALQAL-QAGDPAKAEAAAEQLAKDYP-SSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAP-DPELKPLARLRLAR 93 (145)
T ss_pred HHHHHH-HCCCHHHHHHHHHHHHHHCC-CChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCC-CHHHHHHHHHHHHH
Confidence 344444 36677777777777776422 22122 12 234678889999999999999987541 111 123445678
Q ss_pred HHHHcCCHhHHHHHHHHHHHCCCCCChHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 047178 189 IYYRNNMLERLIKLFKGLEAFDRKPPEKSIVQRVADAYEVLGLLEEKERVLEK 241 (287)
Q Consensus 189 gY~k~G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~G~leeA~~ll~~ 241 (287)
.+...|++++|+..+.......+.| ..+...-+.|...|+.++|...+++
T Consensus 94 ~~~~~~~~d~Al~~L~~~~~~~~~~---~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 94 ILLQQGQYDEALATLQQIPDEAFKA---LAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHcCCHHHHHHHHHhccCcchHH---HHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 8889999999999998765555544 3356777889999999999998865
No 48
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=96.89 E-value=0.033 Score=61.40 Aligned_cols=124 Identities=15% Similarity=0.115 Sum_probs=94.3
Q ss_pred HHHccchhhHHHHHHHHHHCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHH------------
Q 047178 119 LEKEQQWHRVVQVIKWMLSKGQGSTMGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSM------------ 186 (287)
Q Consensus 119 L~k~~~~~~A~qv~~~M~~~G~~pd~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsm------------ 186 (287)
+...|++++|+..|+..++.. ..|..++..|-..|.+.|+.++|...|++..+.+-.......|..+
T Consensus 279 ~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~ 357 (1157)
T PRK11447 279 AVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQ 357 (1157)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHH
Confidence 456789999999999887742 2367788999999999999999999999987654211111123222
Q ss_pred HHHHHHcCCHhHHHHHHHHHHHCCCCCChHHHHHHHHHHHHhcCCHHHHHHHHHHHhHH
Q 047178 187 IAIYYRNNMLERLIKLFKGLEAFDRKPPEKSIVQRVADAYEVLGLLEEKERVLEKYKDL 245 (287)
Q Consensus 187 IsgY~k~G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~G~leeA~~ll~~m~~l 245 (287)
-..+.+.|++++|...|++.... .|+....+..+-..|...|++++|.+.+++...+
T Consensus 358 g~~~~~~g~~~eA~~~~~~Al~~--~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~ 414 (1157)
T PRK11447 358 GDAALKANNLAQAERLYQQARQV--DNTDSYAVLGLGDVAMARKDYAAAERYYQQALRM 414 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 23567899999999999999876 4554466777888999999999999999876654
No 49
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=96.88 E-value=0.13 Score=54.19 Aligned_cols=127 Identities=13% Similarity=-0.015 Sum_probs=100.0
Q ss_pred HHHHHHHccchhhHHHHHHHHHHCCCCCCh-hHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHc
Q 047178 115 ALLALEKEQQWHRVVQVIKWMLSKGQGSTM-GTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRN 193 (287)
Q Consensus 115 ai~~L~k~~~~~~A~qv~~~M~~~G~~pd~-~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~ 193 (287)
+-..+...|..++|..+++...+ +.||. ...-.+...|.+.+++|+|....++....+-. .-...+.+=.++.+.
T Consensus 92 La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~--~~~~~~~~a~~l~~~ 167 (694)
T PRK15179 92 VARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS--SAREILLEAKSWDEI 167 (694)
T ss_pred HHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC--CHHHHHHHHHHHHHh
Confidence 33456778899999999988776 45654 45677889999999999999999999876532 223566677788999
Q ss_pred CCHhHHHHHHHHHHHCCCCCChHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHHh
Q 047178 194 NMLERLIKLFKGLEAFDRKPPEKSIVQRVADAYEVLGLLEEKERVLEKYKDLFT 247 (287)
Q Consensus 194 G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~G~leeA~~ll~~m~~l~~ 247 (287)
|++++|.++|++.... .||..-++..+-.++-+.|+.++|...|+...+.+.
T Consensus 168 g~~~~A~~~y~~~~~~--~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~ 219 (694)
T PRK15179 168 GQSEQADACFERLSRQ--HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIG 219 (694)
T ss_pred cchHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhC
Confidence 9999999999999984 355345678888899999999999999987655543
No 50
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=96.87 E-value=0.0021 Score=48.41 Aligned_cols=83 Identities=25% Similarity=0.313 Sum_probs=54.6
Q ss_pred cCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChHHHHHHHHHHHHhcCCHHHHH
Q 047178 157 DHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNNMLERLIKLFKGLEAFDRKPPEKSIVQRVADAYEVLGLLEEKE 236 (287)
Q Consensus 157 ~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~G~leeA~ 236 (287)
.|+.++|..+|+++.+..-.......|-.+-.+|.+.|++++|+++++..... |+..-..-.+-.+|.++|+.++|.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~~~~---~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKLKLD---PSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCHTHH---HCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHhCCC---CCCHHHHHHHHHHHHHhCCHHHHH
Confidence 47889999999998875421001123444788999999999999999882222 221122234467788999999999
Q ss_pred HHHHHH
Q 047178 237 RVLEKY 242 (287)
Q Consensus 237 ~ll~~m 242 (287)
.+++++
T Consensus 79 ~~l~~~ 84 (84)
T PF12895_consen 79 KALEKA 84 (84)
T ss_dssp HHHHHH
T ss_pred HHHhcC
Confidence 988763
No 51
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=96.86 E-value=0.033 Score=61.33 Aligned_cols=118 Identities=13% Similarity=0.047 Sum_probs=64.5
Q ss_pred HHHHccchhhHHHHHHHHHHCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHcCCHh
Q 047178 118 ALEKEQQWHRVVQVIKWMLSKGQGSTMGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNNMLE 197 (287)
Q Consensus 118 ~L~k~~~~~~A~qv~~~M~~~G~~pd~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~G~~e 197 (287)
.+...|+.++|..++.. ...+...+..|-..|.+.|+.++|.++|++.....- .....+..+...|...|+++
T Consensus 582 ~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P--~~~~a~~~la~~~~~~g~~~ 654 (1157)
T PRK11447 582 RLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREP--GNADARLGLIEVDIAQGDLA 654 (1157)
T ss_pred HHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHCCCHH
Confidence 34555666666555541 223334455556666666666666666666655431 12234555666666666666
Q ss_pred HHHHHHHHHHHCCCCCChHHHHHHHHHHHHhcCCHHHHHHHHHHHhH
Q 047178 198 RLIKLFKGLEAFDRKPPEKSIVQRVADAYEVLGLLEEKERVLEKYKD 244 (287)
Q Consensus 198 eA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~G~leeA~~ll~~m~~ 244 (287)
+|.+.|+.... ..||...++..+..++...|+.++|.+++++...
T Consensus 655 eA~~~l~~ll~--~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~ 699 (1157)
T PRK11447 655 AARAQLAKLPA--TANDSLNTQRRVALAWAALGDTAAAQRTFNRLIP 699 (1157)
T ss_pred HHHHHHHHHhc--cCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence 66666665443 2344334444455556666666666666665443
No 52
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=96.86 E-value=0.038 Score=42.61 Aligned_cols=91 Identities=11% Similarity=-0.075 Sum_probs=36.8
Q ss_pred HHHccchhhHHHHHHHHHHCCCC--CChhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCC-ChhhHHHHHHHHHHcCC
Q 047178 119 LEKEQQWHRVVQVIKWMLSKGQG--STMGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSV-PWQLCKSMIAIYYRNNM 195 (287)
Q Consensus 119 L~k~~~~~~A~qv~~~M~~~G~~--pd~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv-~~~tyNsmIsgY~k~G~ 195 (287)
+.+.+++++|.+.+..+.+..-. .....+..+-..|.+.|+.++|...|++.....-..+ ....+..+-..|.+.|+
T Consensus 12 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 91 (119)
T TIGR02795 12 VLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGD 91 (119)
T ss_pred HHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCC
Confidence 34444555555555444432100 0012233344445555555555555554443210000 01123333444444555
Q ss_pred HhHHHHHHHHHHHC
Q 047178 196 LERLIKLFKGLEAF 209 (287)
Q Consensus 196 ~eeA~~Lf~eM~~~ 209 (287)
.++|...|.+....
T Consensus 92 ~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 92 KEKAKATLQQVIKR 105 (119)
T ss_pred hHHHHHHHHHHHHH
Confidence 55555555554443
No 53
>PRK12370 invasion protein regulator; Provisional
Probab=96.82 E-value=0.2 Score=50.83 Aligned_cols=126 Identities=13% Similarity=-0.030 Sum_probs=86.9
Q ss_pred HHHHHHHHHHccchhhHHHHHHHHHHCCCCCCh-hHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHH
Q 047178 112 LKKALLALEKEQQWHRVVQVIKWMLSKGQGSTM-GTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIY 190 (287)
Q Consensus 112 ~~~ai~~L~k~~~~~~A~qv~~~M~~~G~~pd~-~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY 190 (287)
+..+-..+...|++++|+..++...+. .|+. ..+..+...+...|+.++|...+++.....- +-....+..+-..|
T Consensus 375 ~~~lg~~l~~~G~~~eAi~~~~~Al~l--~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~-p~~~~~~~~la~~l 451 (553)
T PRK12370 375 KYYYGWNLFMAGQLEEALQTINECLKL--DPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHL-QDNPILLSMQVMFL 451 (553)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhcc-ccCHHHHHHHHHHH
Confidence 334445678889999999999998774 3442 2344455567778999999999999875431 11123466677788
Q ss_pred HHcCCHhHHHHHHHHHHHCCCCCChHHHHHHHHHHHHhcCCHHHHHHHHHHHhH
Q 047178 191 YRNNMLERLIKLFKGLEAFDRKPPEKSIVQRVADAYEVLGLLEEKERVLEKYKD 244 (287)
Q Consensus 191 ~k~G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~G~leeA~~ll~~m~~ 244 (287)
...|++++|...+.++... .|+.....+.+-..|+..| +.+...++++..
T Consensus 452 ~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 452 SLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQNS--ERALPTIREFLE 501 (553)
T ss_pred HhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhccH--HHHHHHHHHHHH
Confidence 8999999999999987654 4553344455556677777 577776665443
No 54
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=96.79 E-value=0.065 Score=58.45 Aligned_cols=124 Identities=10% Similarity=0.004 Sum_probs=80.0
Q ss_pred HHHHHHccchhhHHHHHHHHHHCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHcCC
Q 047178 116 LLALEKEQQWHRVVQVIKWMLSKGQGSTMGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNNM 195 (287)
Q Consensus 116 i~~L~k~~~~~~A~qv~~~M~~~G~~pd~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~G~ 195 (287)
-..+.+.|+.++|.+.+...++.. ..+...+..+...+.+.|+.++|...|++....+ |+...|..+-..|.+.|+
T Consensus 549 a~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~---P~~~a~~~LA~~l~~lG~ 624 (987)
T PRK09782 549 ANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNIA---PSANAYVARATIYRQRHN 624 (987)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC---CCHHHHHHHHHHHHHCCC
Confidence 334556667777777776666543 1122222233333344578888888887776543 223457777778888888
Q ss_pred HhHHHHHHHHHHHCCCCCChHHHHHHHHHHHHhcCCHHHHHHHHHHHhHH
Q 047178 196 LERLIKLFKGLEAFDRKPPEKSIVQRVADAYEVLGLLEEKERVLEKYKDL 245 (287)
Q Consensus 196 ~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~G~leeA~~ll~~m~~l 245 (287)
+++|+..|.+.... .||....++.+-..+...|+.++|..++++...+
T Consensus 625 ~deA~~~l~~AL~l--~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l 672 (987)
T PRK09782 625 VPAAVSDLRAALEL--EPNNSNYQAALGYALWDSGDIAQSREMLERAHKG 672 (987)
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 88888888876654 4666566677777788888888888887765443
No 55
>PRK11189 lipoprotein NlpI; Provisional
Probab=96.78 E-value=0.072 Score=49.71 Aligned_cols=117 Identities=9% Similarity=-0.106 Sum_probs=68.0
Q ss_pred HHHccchhhHHHHHHHHHHCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHcCCHhH
Q 047178 119 LEKEQQWHRVVQVIKWMLSKGQGSTMGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNNMLER 198 (287)
Q Consensus 119 L~k~~~~~~A~qv~~~M~~~G~~pd~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~G~~ee 198 (287)
+...|++.+|...|...++.. ..+...|+.+=..|...|+.++|...|++..+.+- ....+|.-+-..|...|++++
T Consensus 74 ~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P--~~~~a~~~lg~~l~~~g~~~e 150 (296)
T PRK11189 74 YDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDP--TYNYAYLNRGIALYYGGRYEL 150 (296)
T ss_pred HHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHCCCHHH
Confidence 455666777766666665532 12455677777777777777777777777665431 122345556666677777777
Q ss_pred HHHHHHHHHHCCCCCChHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 047178 199 LIKLFKGLEAFDRKPPEKSIVQRVADAYEVLGLLEEKERVLEK 241 (287)
Q Consensus 199 A~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~G~leeA~~ll~~ 241 (287)
|++.|+.-... .|+. .........+...++.++|...+.+
T Consensus 151 A~~~~~~al~~--~P~~-~~~~~~~~l~~~~~~~~~A~~~l~~ 190 (296)
T PRK11189 151 AQDDLLAFYQD--DPND-PYRALWLYLAESKLDPKQAKENLKQ 190 (296)
T ss_pred HHHHHHHHHHh--CCCC-HHHHHHHHHHHccCCHHHHHHHHHH
Confidence 77777766553 4543 2112222223345567777766644
No 56
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=96.71 E-value=0.067 Score=54.31 Aligned_cols=132 Identities=17% Similarity=0.150 Sum_probs=98.7
Q ss_pred HHHHHHHHHHccchhhHHHHHHHHHHC---CCCCC----hhHHHHHHHHHHHcCCHHHHHHHHHHhhhC----CCCCCC-
Q 047178 112 LKKALLALEKEQQWHRVVQVIKWMLSK---GQGST----MGTCGQLIRALDMDHRAEEAHKFWEKRIGI----DLHSVP- 179 (287)
Q Consensus 112 ~~~ai~~L~k~~~~~~A~qv~~~M~~~---G~~pd----~~TYnaLI~~y~K~G~leeA~~lF~eM~~~----g~~sv~- 179 (287)
+..+...++..+++++|..++..-.+. -.+++ ..+|+-|=..|-+.|+.+||+++|.+...+ +....+
T Consensus 328 l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~ 407 (508)
T KOG1840|consen 328 LSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYG 407 (508)
T ss_pred HHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChh
Confidence 445666678888888887777654431 12222 357999999999999999999999987542 111011
Q ss_pred -hhhHHHHHHHHHHcCCHhHHHHHHHHH----HHCC-CCCChHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 047178 180 -WQLCKSMIAIYYRNNMLERLIKLFKGL----EAFD-RKPPEKSIVQRVADAYEVLGLLEEKERVLEKYK 243 (287)
Q Consensus 180 -~~tyNsmIsgY~k~G~~eeA~~Lf~eM----~~~G-i~PD~~~Ty~sLI~a~~k~G~leeA~~ll~~m~ 243 (287)
...+|-|=..|.+.+..++|..+|.+- +..| ..||...+|.-|...|...|++|+|.++++...
T Consensus 408 ~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 408 VGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred hhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 134677888999999999999999874 4445 357777889999999999999999999987644
No 57
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=96.59 E-value=0.12 Score=41.26 Aligned_cols=96 Identities=9% Similarity=-0.036 Sum_probs=75.2
Q ss_pred HHHHHHHccchhhHHHHHHHHHHCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHcC
Q 047178 115 ALLALEKEQQWHRVVQVIKWMLSKGQGSTMGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNN 194 (287)
Q Consensus 115 ai~~L~k~~~~~~A~qv~~~M~~~G~~pd~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~G 194 (287)
....+...+++.+|.+.+......+ ..+...|..+-..|.+.|+.++|...|++....+- .+..+|..+=..|...|
T Consensus 23 ~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p--~~~~~~~~la~~~~~~g 99 (135)
T TIGR02552 23 LAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDP--DDPRPYFHAAECLLALG 99 (135)
T ss_pred HHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CChHHHHHHHHHHHHcC
Confidence 3444667889999999998887754 34667888899999999999999999999876542 23344555667899999
Q ss_pred CHhHHHHHHHHHHHCCCCCCh
Q 047178 195 MLERLIKLFKGLEAFDRKPPE 215 (287)
Q Consensus 195 ~~eeA~~Lf~eM~~~Gi~PD~ 215 (287)
++++|+..|+...+.. ||.
T Consensus 100 ~~~~A~~~~~~al~~~--p~~ 118 (135)
T TIGR02552 100 EPESALKALDLAIEIC--GEN 118 (135)
T ss_pred CHHHHHHHHHHHHHhc--ccc
Confidence 9999999999887753 664
No 58
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=96.57 E-value=0.13 Score=45.40 Aligned_cols=118 Identities=11% Similarity=0.061 Sum_probs=79.5
Q ss_pred hhhHHHHHHHHHHCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHH-HHHcCC--HhHHHH
Q 047178 125 WHRVVQVIKWMLSKGQGSTMGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAI-YYRNNM--LERLIK 201 (287)
Q Consensus 125 ~~~A~qv~~~M~~~G~~pd~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsg-Y~k~G~--~eeA~~ 201 (287)
.++++..+...+.. -..|...|..|-..|...|+.++|...|++....+- .+...|..+-.+ |.+.|+ .++|.+
T Consensus 55 ~~~~i~~l~~~L~~-~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P--~~~~~~~~lA~aL~~~~g~~~~~~A~~ 131 (198)
T PRK10370 55 PEAQLQALQDKIRA-NPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRG--ENAELYAALATVLYYQAGQHMTPQTRE 131 (198)
T ss_pred HHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 34444444443332 234566788888888888889999888888776542 122345555555 467676 488888
Q ss_pred HHHHHHHCCCCCChHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHHh
Q 047178 202 LFKGLEAFDRKPPEKSIVQRVADAYEVLGLLEEKERVLEKYKDLFT 247 (287)
Q Consensus 202 Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~G~leeA~~ll~~m~~l~~ 247 (287)
+|++..+.+ |+....+..+-.++...|++++|...++++..+..
T Consensus 132 ~l~~al~~d--P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~ 175 (198)
T PRK10370 132 MIDKALALD--ANEVTALMLLASDAFMQADYAQAIELWQKVLDLNS 175 (198)
T ss_pred HHHHHHHhC--CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 888887754 44456677777788888888888888888766554
No 59
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=96.53 E-value=0.12 Score=39.70 Aligned_cols=101 Identities=12% Similarity=0.042 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCC-ChhhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCC-CChHHHHHHHH
Q 047178 146 TCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSV-PWQLCKSMIAIYYRNNMLERLIKLFKGLEAFDRK-PPEKSIVQRVA 223 (287)
Q Consensus 146 TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv-~~~tyNsmIsgY~k~G~~eeA~~Lf~eM~~~Gi~-PD~~~Ty~sLI 223 (287)
+|-.+...+.+.|+.++|.+.|.++....-..+ ....+..+-..|.+.|++++|...|+......-. |.....+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 566777888999999999999999976532111 1134566889999999999999999998864211 11113356677
Q ss_pred HHHHhcCCHHHHHHHHHHHhHHH
Q 047178 224 DAYEVLGLLEEKERVLEKYKDLF 246 (287)
Q Consensus 224 ~a~~k~G~leeA~~ll~~m~~l~ 246 (287)
..+.+.|+.++|...+++....+
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHC
Confidence 78999999999999998877664
No 60
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.50 E-value=0.073 Score=49.54 Aligned_cols=133 Identities=14% Similarity=0.105 Sum_probs=95.1
Q ss_pred HHHHHHHHHHccchhhHHHHHHHHHHCC-CCCChhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHH
Q 047178 112 LKKALLALEKEQQWHRVVQVIKWMLSKG-QGSTMGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIY 190 (287)
Q Consensus 112 ~~~ai~~L~k~~~~~~A~qv~~~M~~~G-~~pd~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY 190 (287)
|...+..+.+.+..+.|.++|+.-++.+ +..++....++|.-+| .++.+.|..+|+.....-. .+...|..-|+-+
T Consensus 4 ~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~-~~d~~~A~~Ife~glk~f~--~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 4 WIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYC-NKDPKRARKIFERGLKKFP--SDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHT-CS-HHHHHHHHHHHHHHHT--T-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHCC--CCHHHHHHHHHHH
Confidence 4455666777777888999999987643 4566777777776443 4556679999998876421 2334688888889
Q ss_pred HHcCCHhHHHHHHHHHHHCCCCCCh--HHHHHHHHHHHHhcCCHHHHHHHHHHHhHHHhh
Q 047178 191 YRNNMLERLIKLFKGLEAFDRKPPE--KSIVQRVADAYEVLGLLEEKERVLEKYKDLFTE 248 (287)
Q Consensus 191 ~k~G~~eeA~~Lf~eM~~~Gi~PD~--~~Ty~sLI~a~~k~G~leeA~~ll~~m~~l~~~ 248 (287)
.+.|+.+.|..||+.-... +.++. ...|...|+-=.+.|+++.+..|...+.+++..
T Consensus 81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~ 139 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPE 139 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTT
T ss_pred HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Confidence 9999999999999998766 43331 147888888888899999999998888777644
No 61
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=96.48 E-value=0.48 Score=41.70 Aligned_cols=131 Identities=12% Similarity=0.051 Sum_probs=89.1
Q ss_pred HHHHHHHHHHccchhhHHHHHHHHHHCCCCCChh--HHHHHHHHHHHc--------CCHHHHHHHHHHhhhCCCCCCChh
Q 047178 112 LKKALLALEKEQQWHRVVQVIKWMLSKGQGSTMG--TCGQLIRALDMD--------HRAEEAHKFWEKRIGIDLHSVPWQ 181 (287)
Q Consensus 112 ~~~ai~~L~k~~~~~~A~qv~~~M~~~G~~pd~~--TYnaLI~~y~K~--------G~leeA~~lF~eM~~~g~~sv~~~ 181 (287)
+...-..+...+++++|+..++.+.+..-..... ++..+-.+|.+. |+.++|.+.|++.....-. +..
T Consensus 73 ~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~--~~~ 150 (235)
T TIGR03302 73 QLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN--SEY 150 (235)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC--Chh
Confidence 3445567788899999999999988743211111 333333334433 7899999999999865421 111
Q ss_pred hH-----------------HHHHHHHHHcCCHhHHHHHHHHHHHCCC-CCChHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 047178 182 LC-----------------KSMIAIYYRNNMLERLIKLFKGLEAFDR-KPPEKSIVQRVADAYEVLGLLEEKERVLEKYK 243 (287)
Q Consensus 182 ty-----------------NsmIsgY~k~G~~eeA~~Lf~eM~~~Gi-~PD~~~Ty~sLI~a~~k~G~leeA~~ll~~m~ 243 (287)
.+ -.+-..|.+.|++++|+..|.+.....- .|+..-.+..+..++.+.|+.++|...++...
T Consensus 151 ~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~ 230 (235)
T TIGR03302 151 APDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLG 230 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 11 1344568889999999999999876521 23323457788899999999999999887654
Q ss_pred H
Q 047178 244 D 244 (287)
Q Consensus 244 ~ 244 (287)
.
T Consensus 231 ~ 231 (235)
T TIGR03302 231 A 231 (235)
T ss_pred h
Confidence 3
No 62
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=96.48 E-value=0.011 Score=62.62 Aligned_cols=93 Identities=9% Similarity=-0.010 Sum_probs=76.6
Q ss_pred CCChhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChHHHHH
Q 047178 141 GSTMGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNNMLERLIKLFKGLEAFDRKPPEKSIVQ 220 (287)
Q Consensus 141 ~pd~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~ 220 (287)
.||..+|.++++.-.-+|+++-|..+..+|.++|+. +....|-.||-| .|...-+..+++.|.+.|+.||. .||.
T Consensus 201 ~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfp-ir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~s-eT~a 275 (1088)
T KOG4318|consen 201 APTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFP-IRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGS-ETQA 275 (1088)
T ss_pred CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCC-cccccchhhhhc---CccchHHHHHHHHHHHhcCCCCc-chhH
Confidence 388999999999999999999999999999999984 443333445544 78888888999999999999997 9998
Q ss_pred HHHHHHHhcCCHHHHHHH
Q 047178 221 RVADAYEVLGLLEEKERV 238 (287)
Q Consensus 221 sLI~a~~k~G~leeA~~l 238 (287)
..+-.+...|.+..+.+.
T Consensus 276 dyvip~l~N~~t~~~~e~ 293 (1088)
T KOG4318|consen 276 DYVIPQLSNGQTKYGEEG 293 (1088)
T ss_pred HHHHhhhcchhhhhcccc
Confidence 888888887776666654
No 63
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.47 E-value=0.097 Score=49.14 Aligned_cols=154 Identities=19% Similarity=0.202 Sum_probs=93.5
Q ss_pred HHHHHHHccCCCcchHHHHHHHHHHccCCCCH-HHHHHHHHHHHHccchhhHHHHHHHHHHCCCCCChhHHHHHHHHHHH
Q 047178 78 FLVNTLLDLKNSKEDVYGTLDAWVAWEQNFPV-GSLKKALLALEKEQQWHRVVQVIKWMLSKGQGSTMGTCGQLIRALDM 156 (287)
Q Consensus 78 ~Li~~l~~lg~~~~~v~~~Ld~~~~~~~~~~~-~s~~~ai~~L~k~~~~~~A~qv~~~M~~~G~~pd~~TYnaLI~~y~K 156 (287)
-++..+...+..+++....+.+|++....-+. +....+.-.+++.+.+++|+...+. |- ++..+-.=+..+-|
T Consensus 76 r~~a~~~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~----~~--~lE~~Al~VqI~lk 149 (299)
T KOG3081|consen 76 RLLAEYLELESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHL----GE--NLEAAALNVQILLK 149 (299)
T ss_pred HHHHHHhhCcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhc----cc--hHHHHHHHHHHHHH
Confidence 34455555566667777777777665443332 3444555567888888888766544 22 22222222444567
Q ss_pred cCCHHHHHHHHHHhhhCCCCCCChhh----HHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChHHHHHHHHHHHHhcCCH
Q 047178 157 DHRAEEAHKFWEKRIGIDLHSVPWQL----CKSMIAIYYRNNMLERLIKLFKGLEAFDRKPPEKSIVQRVADAYEVLGLL 232 (287)
Q Consensus 157 ~G~leeA~~lF~eM~~~g~~sv~~~t----yNsmIsgY~k~G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~G~l 232 (287)
..++|-|+....+|..-+ ...| =++.|....-.+.+.+|+-+|++|-++ +.|+. -+.+-..-++-..|++
T Consensus 150 ~~r~d~A~~~lk~mq~id----ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~-~llnG~Av~~l~~~~~ 223 (299)
T KOG3081|consen 150 MHRFDLAEKELKKMQQID----EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTP-LLLNGQAVCHLQLGRY 223 (299)
T ss_pred HHHHHHHHHHHHHHHccc----hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCCh-HHHccHHHHHHHhcCH
Confidence 777888888888886543 1122 334555555556778888888887652 44553 4566666666677888
Q ss_pred HHHHHHHHHHh
Q 047178 233 EEKERVLEKYK 243 (287)
Q Consensus 233 eeA~~ll~~m~ 243 (287)
++|+.++++..
T Consensus 224 eeAe~lL~eaL 234 (299)
T KOG3081|consen 224 EEAESLLEEAL 234 (299)
T ss_pred HHHHHHHHHHH
Confidence 88888877543
No 64
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=96.46 E-value=0.18 Score=42.04 Aligned_cols=95 Identities=6% Similarity=-0.025 Sum_probs=78.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChHHHHHHHHHHH
Q 047178 147 CGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNNMLERLIKLFKGLEAFDRKPPEKSIVQRVADAY 226 (287)
Q Consensus 147 YnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~ 226 (287)
+..+-..+...|++++|...|+.....+- .+...|..+-..+.+.|++++|...|+..... .|+....+..+-.++
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P--~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l--~p~~~~a~~~lg~~l 102 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQP--WSWRAHIALAGTWMMLKEYTTAINFYGHALML--DASHPEPVYQTGVCL 102 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCCcHHHHHHHHHH
Confidence 44566778899999999999999887652 34457888999999999999999999999874 465567788888899
Q ss_pred HhcCCHHHHHHHHHHHhHH
Q 047178 227 EVLGLLEEKERVLEKYKDL 245 (287)
Q Consensus 227 ~k~G~leeA~~ll~~m~~l 245 (287)
...|+.++|...+.....+
T Consensus 103 ~~~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 103 KMMGEPGLAREAFQTAIKM 121 (144)
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 9999999999999876554
No 65
>PRK14574 hmsH outer membrane protein; Provisional
Probab=96.28 E-value=0.17 Score=54.31 Aligned_cols=53 Identities=19% Similarity=0.222 Sum_probs=24.9
Q ss_pred HHHHHHHcCCHhHHHHHHHHHHHCCCCCChHHHHHHHHHHHHhcCCHHHHHHHHH
Q 047178 186 MIAIYYRNNMLERLIKLFKGLEAFDRKPPEKSIVQRVADAYEVLGLLEEKERVLE 240 (287)
Q Consensus 186 mIsgY~k~G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~G~leeA~~ll~ 240 (287)
++..+.-.|++.+|.++++++... -|...-....+-+.+..-|...+|++.++
T Consensus 422 ~a~~~~~~gdl~~Ae~~le~l~~~--aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k 474 (822)
T PRK14574 422 LVQSLVALNDLPTAQKKLEDLSST--APANQNLRIALASIYLARDLPRKAEQELK 474 (822)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 344444555555555555555332 23223334444444555555555555553
No 66
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=96.27 E-value=0.099 Score=49.18 Aligned_cols=127 Identities=14% Similarity=0.044 Sum_probs=89.0
Q ss_pred HHHHHHHHHccchhhHHHHHHHHHHCCCCCChhH---HHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHH
Q 047178 113 KKALLALEKEQQWHRVVQVIKWMLSKGQGSTMGT---CGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAI 189 (287)
Q Consensus 113 ~~ai~~L~k~~~~~~A~qv~~~M~~~G~~pd~~T---YnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsg 189 (287)
.-.+..+.+.++.+.|.+.++.|.+. ..|... ..+.|+.+--...+.+|..+|++|.++. +.++.+.|.+-.+
T Consensus 135 al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~--~~t~~~lng~A~~ 210 (290)
T PF04733_consen 135 ALAVQILLKMNRPDLAEKELKNMQQI--DEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKF--GSTPKLLNGLAVC 210 (290)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHCC--SCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS----SHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhc--CCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcc--CCCHHHHHHHHHH
Confidence 34667788999999999999999764 345432 2334444433457999999999998763 2345678999999
Q ss_pred HHHcCCHhHHHHHHHHHHHCCCCCChHHHHHHHHHHHHhcCCH-HHHHHHHHHHhHH
Q 047178 190 YYRNNMLERLIKLFKGLEAFDRKPPEKSIVQRVADAYEVLGLL-EEKERVLEKYKDL 245 (287)
Q Consensus 190 Y~k~G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~G~l-eeA~~ll~~m~~l 245 (287)
+...|++++|.+++.+-... .|+...|..-+|-.....|+- +.+.+.+.++...
T Consensus 211 ~l~~~~~~eAe~~L~~al~~--~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 211 HLQLGHYEEAEELLEEALEK--DPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp HHHCT-HHHHHHHHHHHCCC---CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred HHHhCCHHHHHHHHHHHHHh--ccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 99999999999999986544 455445555667677778877 6677777765544
No 67
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=96.25 E-value=0.91 Score=44.13 Aligned_cols=131 Identities=11% Similarity=0.021 Sum_probs=87.0
Q ss_pred CHHHHHHHHHHHHHccchhhHHHHHHHHHHCCCCCChhHHH--HHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHH
Q 047178 108 PVGSLKKALLALEKEQQWHRVVQVIKWMLSKGQGSTMGTCG--QLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKS 185 (287)
Q Consensus 108 ~~~s~~~ai~~L~k~~~~~~A~qv~~~M~~~G~~pd~~TYn--aLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNs 185 (287)
+...+.-+-..-.+.|+.+.|.+.+..+.+ ..||...+- ..-..+...|+.++|...++++.+.+- -+...+..
T Consensus 117 p~l~~llaA~aA~~~g~~~~A~~~l~~A~~--~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P--~~~~al~l 192 (398)
T PRK10747 117 PVVNYLLAAEAAQQRGDEARANQHLERAAE--LADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAP--RHPEVLRL 192 (398)
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC--CCHHHHHH
Confidence 333443333333677888888888888865 345543332 335677888889999988888877652 22245777
Q ss_pred HHHHHHHcCCHhHHHHHHHHHHHCCCCCCh----------------------------------------HHHHHHHHHH
Q 047178 186 MIAIYYRNNMLERLIKLFKGLEAFDRKPPE----------------------------------------KSIVQRVADA 225 (287)
Q Consensus 186 mIsgY~k~G~~eeA~~Lf~eM~~~Gi~PD~----------------------------------------~~Ty~sLI~a 225 (287)
+...|.+.|++++|.+++..+...+..++. ......+..+
T Consensus 193 l~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~ 272 (398)
T PRK10747 193 AEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEH 272 (398)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHH
Confidence 888888889999888888888876654321 1223344566
Q ss_pred HHhcCCHHHHHHHHHHH
Q 047178 226 YEVLGLLEEKERVLEKY 242 (287)
Q Consensus 226 ~~k~G~leeA~~ll~~m 242 (287)
+...|+.++|..++++.
T Consensus 273 l~~~g~~~~A~~~L~~~ 289 (398)
T PRK10747 273 LIECDDHDTAQQIILDG 289 (398)
T ss_pred HHHCCCHHHHHHHHHHH
Confidence 77788888888887653
No 68
>PRK11189 lipoprotein NlpI; Provisional
Probab=96.09 E-value=0.25 Score=46.04 Aligned_cols=118 Identities=8% Similarity=-0.070 Sum_probs=87.7
Q ss_pred chhhHHHHHHHHHHCC-CCCC--hhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHcCCHhHHH
Q 047178 124 QWHRVVQVIKWMLSKG-QGST--MGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNNMLERLI 200 (287)
Q Consensus 124 ~~~~A~qv~~~M~~~G-~~pd--~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~G~~eeA~ 200 (287)
+.+.++.-+..++... +.|+ ...|.-+=..|...|+.++|...|++....+- .....|+.+=..|.+.|++++|.
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P--~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRP--DMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHCCCHHHHH
Confidence 3344444455555432 2222 24466666778999999999999999887652 23357999999999999999999
Q ss_pred HHHHHHHHCCCCCChHHHHHHHHHHHHhcCCHHHHHHHHHHHhHH
Q 047178 201 KLFKGLEAFDRKPPEKSIVQRVADAYEVLGLLEEKERVLEKYKDL 245 (287)
Q Consensus 201 ~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~G~leeA~~ll~~m~~l 245 (287)
+.|+...+ +.|+...+|.-+..++...|+.++|.+.++....+
T Consensus 119 ~~~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~ 161 (296)
T PRK11189 119 EAFDSVLE--LDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD 161 (296)
T ss_pred HHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 99999886 45765566777777889999999999999875554
No 69
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=96.08 E-value=0.09 Score=50.65 Aligned_cols=102 Identities=9% Similarity=-0.056 Sum_probs=78.3
Q ss_pred HHHHHHccchhhHHHHHHHHHHCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHcCC
Q 047178 116 LLALEKEQQWHRVVQVIKWMLSKGQGSTMGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNNM 195 (287)
Q Consensus 116 i~~L~k~~~~~~A~qv~~~M~~~G~~pd~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~G~ 195 (287)
-..+...+++.+|++++...++..- .+...|..+-.+|.+.|++++|...+++....+- .....|..+-.+|.+.|+
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~P-~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P--~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLDP-NNAELYADRAQANIKLGNFTEAVADANKAIELDP--SLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc--CCHHHHHHHHHHHHHhCC
Confidence 4456778999999999999887532 3566788888899999999999999999987542 223467778889999999
Q ss_pred HhHHHHHHHHHHHCCCCCChHHHHHHHH
Q 047178 196 LERLIKLFKGLEAFDRKPPEKSIVQRVA 223 (287)
Q Consensus 196 ~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI 223 (287)
+++|...|++.... .|+. ..+..++
T Consensus 86 ~~eA~~~~~~al~l--~P~~-~~~~~~l 110 (356)
T PLN03088 86 YQTAKAALEKGASL--APGD-SRFTKLI 110 (356)
T ss_pred HHHHHHHHHHHHHh--CCCC-HHHHHHH
Confidence 99999999998864 4664 3334444
No 70
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.05 E-value=0.093 Score=49.92 Aligned_cols=90 Identities=14% Similarity=0.192 Sum_probs=64.7
Q ss_pred HccchhhHHHHHHHHHHCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHcCCHhHHH
Q 047178 121 KEQQWHRVVQVIKWMLSKGQGSTMGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNNMLERLI 200 (287)
Q Consensus 121 k~~~~~~A~qv~~~M~~~G~~pd~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~G~~eeA~ 200 (287)
+.+.++-+.-.++.|.+.|+..|..+|+.||+.+=|..-+. ..+|....- -|=+ +-+-++
T Consensus 84 ~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP--~nvfQ~~F~----------------HYP~--QQ~C~I 143 (406)
T KOG3941|consen 84 GRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIP--QNVFQKVFL----------------HYPQ--QQNCAI 143 (406)
T ss_pred ccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccccccc--HHHHHHHHh----------------hCch--hhhHHH
Confidence 34455556667789999999999999999999776644332 122322211 1111 234478
Q ss_pred HHHHHHHHCCCCCChHHHHHHHHHHHHhcCC
Q 047178 201 KLFKGLEAFDRKPPEKSIVQRVADAYEVLGL 231 (287)
Q Consensus 201 ~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~G~ 231 (287)
.++++|+..|+.|| .-+--+||++|++-|-
T Consensus 144 ~vLeqME~hGVmPd-kE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 144 KVLEQMEWHGVMPD-KEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHHHHHcCCCCc-hHHHHHHHHHhccccc
Confidence 99999999999999 5888999999998885
No 71
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=96.01 E-value=0.25 Score=50.18 Aligned_cols=138 Identities=12% Similarity=0.174 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHHccchhhHHHHHHHHHH---CCCCCChhHHHHHH----HHHHHcCCHHHHHHHHHHhhh-----CCCCC
Q 047178 110 GSLKKALLALEKEQQWHRVVQVIKWMLS---KGQGSTMGTCGQLI----RALDMDHRAEEAHKFWEKRIG-----IDLHS 177 (287)
Q Consensus 110 ~s~~~ai~~L~k~~~~~~A~qv~~~M~~---~G~~pd~~TYnaLI----~~y~K~G~leeA~~lF~eM~~-----~g~~s 177 (287)
.+...+...+...|+++.|.+++++-++ ++.+.+.-...+++ ..|...+++++|..+|+++.. .|-..
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 4455577778899999999999998654 23333333344444 467889999999999999863 22111
Q ss_pred CC-hhhHHHHHHHHHHcCCHhHHHHHHHHHH-----HCCC-CCChHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHHh
Q 047178 178 VP-WQLCKSMIAIYYRNNMLERLIKLFKGLE-----AFDR-KPPEKSIVQRVADAYEVLGLLEEKERVLEKYKDLFT 247 (287)
Q Consensus 178 v~-~~tyNsmIsgY~k~G~~eeA~~Lf~eM~-----~~Gi-~PD~~~Ty~sLI~a~~k~G~leeA~~ll~~m~~l~~ 247 (287)
+. ..+++.|=..|++.|++++|...+++-. ..|. .|+...-++.+...|+..+.+++|..++.+-..+|.
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~ 356 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYL 356 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHH
Confidence 11 1367777778999999998887776542 2233 344334467777789999999999999987777776
No 72
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=95.99 E-value=0.28 Score=52.33 Aligned_cols=172 Identities=15% Similarity=0.159 Sum_probs=112.3
Q ss_pred cCcCCCCcccHHHHHHHHHccCCCcchHHHHHHHHHHccCCC---CHHHHHHHHHHHHHccchhhHHHHHHHHHHCCCCC
Q 047178 66 IGENVPRKDKINFLVNTLLDLKNSKEDVYGTLDAWVAWEQNF---PVGSLKKALLALEKEQQWHRVVQVIKWMLSKGQGS 142 (287)
Q Consensus 66 ~~~~~s~~~~~~~Li~~l~~lg~~~~~v~~~Ld~~~~~~~~~---~~~s~~~ai~~L~k~~~~~~A~qv~~~M~~~G~~p 142 (287)
+|..+|+.=++-.|.-|+.++... ..-..|..+....... ...-+..+...|-..|+++.|+.+|..+...-..-
T Consensus 370 ~~~~~s~~l~v~rl~icL~~L~~~--e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~ 447 (895)
T KOG2076|consen 370 VGKELSYDLRVIRLMICLVHLKER--ELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQ 447 (895)
T ss_pred CCCCCCccchhHhHhhhhhccccc--chHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCcccc
Confidence 555688876653333344444322 2223344432221111 12335577888999999999999999988765556
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHcCCHhHHHHHHHHHH--------HCCCCCC
Q 047178 143 TMGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNNMLERLIKLFKGLE--------AFDRKPP 214 (287)
Q Consensus 143 d~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~G~~eeA~~Lf~eM~--------~~Gi~PD 214 (287)
+.+.|--+=.+|-.-|..++|.+.|++.....-.-.+ .=-+|=+.|-+.|++|+|++.+..|. ..+..|+
T Consensus 448 ~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D--~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e 525 (895)
T KOG2076|consen 448 NAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLD--ARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPE 525 (895)
T ss_pred chhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchh--hhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHH
Confidence 6788999999999999999999999998764310011 12234456889999999999999964 3446666
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 047178 215 EKSIVQRVADAYEVLGLLEEKERVLEKY 242 (287)
Q Consensus 215 ~~~Ty~sLI~a~~k~G~leeA~~ll~~m 242 (287)
. -.---..+-|...|+.++=..+..+|
T Consensus 526 ~-ri~~~r~d~l~~~gk~E~fi~t~~~L 552 (895)
T KOG2076|consen 526 R-RILAHRCDILFQVGKREEFINTASTL 552 (895)
T ss_pred H-HHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 4 33344556788889887744443333
No 73
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=95.89 E-value=0.096 Score=43.25 Aligned_cols=50 Identities=18% Similarity=0.151 Sum_probs=37.6
Q ss_pred CCHHHHHHHHHHHHHcc--------chhhHHHHHHHHHHCCCCCChhHHHHHHHHHHH
Q 047178 107 FPVGSLKKALLALEKEQ--------QWHRVVQVIKWMLSKGQGSTMGTCGQLIRALDM 156 (287)
Q Consensus 107 ~~~~s~~~ai~~L~k~~--------~~~~A~qv~~~M~~~G~~pd~~TYnaLI~~y~K 156 (287)
+++..++.++....+.. +.-+.+.++..|+..++.|+..|||.+|..+.+
T Consensus 59 Psv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl~~Llk 116 (120)
T PF08579_consen 59 PSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVLGSLLK 116 (120)
T ss_pred CcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHH
Confidence 45667888888776643 233457788888888899999999999988765
No 74
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=95.89 E-value=0.24 Score=46.09 Aligned_cols=93 Identities=10% Similarity=-0.010 Sum_probs=61.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHcCCHhHHHHHHHHHHHCCC-CCCh-HHHHHHHHHH
Q 047178 148 GQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNNMLERLIKLFKGLEAFDR-KPPE-KSIVQRVADA 225 (287)
Q Consensus 148 naLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~G~~eeA~~Lf~eM~~~Gi-~PD~-~~Ty~sLI~a 225 (287)
..+-..|...|++++|+..|++.....- .+...+..+-..|...|++++|..++.+.....- .|+. ...|..+...
T Consensus 118 ~~~a~~~~~~G~~~~A~~~~~~al~~~p--~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~ 195 (355)
T cd05804 118 GMLAFGLEEAGQYDRAEEAARRALELNP--DDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALF 195 (355)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCC--CCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHH
Confidence 3444567778888888888888776542 1223466677778888888888888887665321 2331 0123356667
Q ss_pred HHhcCCHHHHHHHHHHH
Q 047178 226 YEVLGLLEEKERVLEKY 242 (287)
Q Consensus 226 ~~k~G~leeA~~ll~~m 242 (287)
+...|+.++|..++++.
T Consensus 196 ~~~~G~~~~A~~~~~~~ 212 (355)
T cd05804 196 YLERGDYEAALAIYDTH 212 (355)
T ss_pred HHHCCCHHHHHHHHHHH
Confidence 77888888888888765
No 75
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=95.83 E-value=0.79 Score=38.92 Aligned_cols=111 Identities=6% Similarity=0.098 Sum_probs=70.3
Q ss_pred HHHHHHHHccchhhHHHHHHHHHHCCCCCC--hhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHH
Q 047178 114 KALLALEKEQQWHRVVQVIKWMLSKGQGST--MGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYY 191 (287)
Q Consensus 114 ~ai~~L~k~~~~~~A~qv~~~M~~~G~~pd--~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~ 191 (287)
..-..+...|++++|+..|+...+..-.++ ...|..+-..|.+.|+.++|...+.+.....- .....|..+-..|.
T Consensus 40 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~lg~~~~ 117 (172)
T PRK02603 40 RDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNP--KQPSALNNIAVIYH 117 (172)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc--ccHHHHHHHHHHHH
Confidence 344445677888888888888776433222 35677788888888999999988888776431 12234555666677
Q ss_pred HcCC--------------HhHHHHHHHHHHHCCCCCChHHHHHHHHHHHHhcCC
Q 047178 192 RNNM--------------LERLIKLFKGLEAFDRKPPEKSIVQRVADAYEVLGL 231 (287)
Q Consensus 192 k~G~--------------~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~G~ 231 (287)
..|. +++|.+++.+... ..|+. |..++.-+...|.
T Consensus 118 ~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~--~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 118 KRGEKAEEAGDQDEAEALFDKAAEYWKQAIR--LAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HcCChHhHhhCHHHHHHHHHHHHHHHHHHHh--hCchh---HHHHHHHHHhcCc
Confidence 7666 4556666665444 34653 4555555555553
No 76
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=95.76 E-value=0.3 Score=41.52 Aligned_cols=102 Identities=16% Similarity=0.178 Sum_probs=72.3
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCC-hhhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChHHHHHHH
Q 047178 144 MGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVP-WQLCKSMIAIYYRNNMLERLIKLFKGLEAFDRKPPEKSIVQRV 222 (287)
Q Consensus 144 ~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~-~~tyNsmIsgY~k~G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sL 222 (287)
...|..+-..|...|+.++|...|++....+-.+.. ...|..+-..|.+.|++++|...|.+.... .|+....+..+
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l 112 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL--NPKQPSALNNI 112 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHH
Confidence 346777778888999999999999998754321111 246888899999999999999999998874 46544556666
Q ss_pred HHHHHhcCC-------HHHHHHHHHHHhHHHh
Q 047178 223 ADAYEVLGL-------LEEKERVLEKYKDLFT 247 (287)
Q Consensus 223 I~a~~k~G~-------leeA~~ll~~m~~l~~ 247 (287)
...|...|. .+.|...+++-...+.
T Consensus 113 g~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~ 144 (172)
T PRK02603 113 AVIYHKRGEKAEEAGDQDEAEALFDKAAEYWK 144 (172)
T ss_pred HHHHHHcCChHhHhhCHHHHHHHHHHHHHHHH
Confidence 667777665 4555555554444443
No 77
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=95.75 E-value=1.5 Score=42.60 Aligned_cols=124 Identities=14% Similarity=-0.012 Sum_probs=87.2
Q ss_pred HHHHHHHHHHccchhhHHHHHHHHHHCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHH
Q 047178 112 LKKALLALEKEQQWHRVVQVIKWMLSKGQGSTMGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYY 191 (287)
Q Consensus 112 ~~~ai~~L~k~~~~~~A~qv~~~M~~~G~~pd~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~ 191 (287)
...+...+...|+.++|..++....+. .||. --.++.+.+..|+.++|.+..++..++.- -+...+-++=..+.
T Consensus 266 ~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~--~l~~l~~~l~~~~~~~al~~~e~~lk~~P--~~~~l~l~lgrl~~ 339 (398)
T PRK10747 266 QVAMAEHLIECDDHDTAQQIILDGLKR--QYDE--RLVLLIPRLKTNNPEQLEKVLRQQIKQHG--DTPLLWSTLGQLLM 339 (398)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCH--HHHHHHhhccCCChHHHHHHHHHHHhhCC--CCHHHHHHHHHHHH
Confidence 334566677888888888888777664 3333 12244555566888888888888876542 22234556667778
Q ss_pred HcCCHhHHHHHHHHHHHCCCCCChHHHHHHHHHHHHhcCCHHHHHHHHHHHhH
Q 047178 192 RNNMLERLIKLFKGLEAFDRKPPEKSIVQRVADAYEVLGLLEEKERVLEKYKD 244 (287)
Q Consensus 192 k~G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~G~leeA~~ll~~m~~ 244 (287)
+.|++++|.+.|+...+. .||. .+|..+-..+.+.|+.++|.+++.+-..
T Consensus 340 ~~~~~~~A~~~le~al~~--~P~~-~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 340 KHGEWQEASLAFRAALKQ--RPDA-YDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HCCCHHHHHHHHHHHHhc--CCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 888899999999888764 5885 7778888888889998888887765433
No 78
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=95.74 E-value=0.051 Score=38.56 Aligned_cols=51 Identities=14% Similarity=0.094 Sum_probs=23.8
Q ss_pred HcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHcCCHhHHHHHHHHHHH
Q 047178 156 MDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNNMLERLIKLFKGLEA 208 (287)
Q Consensus 156 K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~G~~eeA~~Lf~eM~~ 208 (287)
+.|++++|.++|+++....- -+.-.+-.|..+|.+.|++++|..+|..+..
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p--~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNP--DNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTT--TSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hccCHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44555555555555544321 1112233455555555555555555555544
No 79
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=95.73 E-value=0.33 Score=46.78 Aligned_cols=91 Identities=14% Similarity=0.061 Sum_probs=72.9
Q ss_pred HHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChHHHHHHHHHHHHhcCC
Q 047178 152 RALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNNMLERLIKLFKGLEAFDRKPPEKSIVQRVADAYEVLGL 231 (287)
Q Consensus 152 ~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~G~ 231 (287)
..+...|++++|.++|++....+- .....|..+-.+|.+.|++++|+..+++.... .|+....|..+-.+|...|+
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~P--~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l--~P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLDP--NNAELYADRAQANIKLGNFTEAVADANKAIEL--DPSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHhCC
Confidence 345678999999999999987652 23346777888999999999999999998875 46555667888889999999
Q ss_pred HHHHHHHHHHHhHHH
Q 047178 232 LEEKERVLEKYKDLF 246 (287)
Q Consensus 232 leeA~~ll~~m~~l~ 246 (287)
+++|...|++...+.
T Consensus 86 ~~eA~~~~~~al~l~ 100 (356)
T PLN03088 86 YQTAKAALEKGASLA 100 (356)
T ss_pred HHHHHHHHHHHHHhC
Confidence 999999998765553
No 80
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=95.69 E-value=0.37 Score=46.51 Aligned_cols=138 Identities=14% Similarity=0.232 Sum_probs=97.1
Q ss_pred CCCHHHHHHHHHHHHHccchhhHHHHHHHHHHCCCCCChh----HHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChh
Q 047178 106 NFPVGSLKKALLALEKEQQWHRVVQVIKWMLSKGQGSTMG----TCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQ 181 (287)
Q Consensus 106 ~~~~~s~~~ai~~L~k~~~~~~A~qv~~~M~~~G~~pd~~----TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~ 181 (287)
.|....+..++..+...+.|++|+++-..+.+.|-.+.-+ -|.-|-..+.-..+++.|..++.+-...+-..+
T Consensus 138 efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cv--- 214 (389)
T COG2956 138 EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCV--- 214 (389)
T ss_pred hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccce---
Confidence 4666778889999999999999999999888755433211 123333333356788889999988766442211
Q ss_pred hHHHHH--HHHHHcCCHhHHHHHHHHHHHCCCCCChHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHHhh
Q 047178 182 LCKSMI--AIYYRNNMLERLIKLFKGLEAFDRKPPEKSIVQRVADAYEVLGLLEEKERVLEKYKDLFTE 248 (287)
Q Consensus 182 tyNsmI--sgY~k~G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~G~leeA~~ll~~m~~l~~~ 248 (287)
=.+|| ..+...|+++.|++-++...+.+..-=. -+...|..+|...|+.+++...+..+.+-+.+
T Consensus 215 -RAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~-evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g 281 (389)
T COG2956 215 -RASIILGRVELAKGDYQKAVEALERVLEQNPEYLS-EVLEMLYECYAQLGKPAEGLNFLRRAMETNTG 281 (389)
T ss_pred -ehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHH-HHHHHHHHHHHHhCCHHHHHHHHHHHHHccCC
Confidence 23344 3467899999999999998887632211 23577888999999999999998877766554
No 81
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=95.64 E-value=2.4 Score=41.28 Aligned_cols=125 Identities=6% Similarity=-0.113 Sum_probs=63.2
Q ss_pred HHHHHccchhhHHHHHHHHHHCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHH-HH---HHHHHH
Q 047178 117 LALEKEQQWHRVVQVIKWMLSKGQGSTMGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCK-SM---IAIYYR 192 (287)
Q Consensus 117 ~~L~k~~~~~~A~qv~~~M~~~G~~pd~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyN-sm---IsgY~k 192 (287)
..+-..|+++.|.+.++.+.+.. +-+..++-.+...|...|++++|.+++....+.+... +. .+. .- -.++..
T Consensus 161 ~l~l~~~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~-~~-~~~~l~~~a~~~~l~ 237 (409)
T TIGR00540 161 RILLAQNELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFD-DE-EFADLEQKAEIGLLD 237 (409)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCC-HH-HHHHHHHHHHHHHHH
Confidence 33444566666666666665543 1233455566666666666666666666666554321 11 111 00 111122
Q ss_pred cCCHhHHHHHHHHHHHCCCC---CChHHHHHHHHHHHHhcCCHHHHHHHHHHHhHH
Q 047178 193 NNMLERLIKLFKGLEAFDRK---PPEKSIVQRVADAYEVLGLLEEKERVLEKYKDL 245 (287)
Q Consensus 193 ~G~~eeA~~Lf~eM~~~Gi~---PD~~~Ty~sLI~a~~k~G~leeA~~ll~~m~~l 245 (287)
.+..+++.+.+..+....-. .| ...+..+...+...|+.++|..++++....
T Consensus 238 ~~~~~~~~~~L~~~~~~~p~~~~~~-~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~ 292 (409)
T TIGR00540 238 EAMADEGIDGLLNWWKNQPRHRRHN-IALKIALAEHLIDCDDHDSAQEIIFDGLKK 292 (409)
T ss_pred HHHHhcCHHHHHHHHHHCCHHHhCC-HHHHHHHHHHHHHCCChHHHHHHHHHHHhh
Confidence 22223233344444332210 13 355666667788888888888888765553
No 82
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=95.62 E-value=2.2 Score=41.49 Aligned_cols=128 Identities=14% Similarity=0.029 Sum_probs=86.3
Q ss_pred HHHHHHHHccchhhHHHHHHHHHHCCCCCChhHH-HHHHHHH--HHcCCHHHHHHHHHHhhhCCCCCCCh--hhHHHHHH
Q 047178 114 KALLALEKEQQWHRVVQVIKWMLSKGQGSTMGTC-GQLIRAL--DMDHRAEEAHKFWEKRIGIDLHSVPW--QLCKSMIA 188 (287)
Q Consensus 114 ~ai~~L~k~~~~~~A~qv~~~M~~~G~~pd~~TY-naLI~~y--~K~G~leeA~~lF~eM~~~g~~sv~~--~tyNsmIs 188 (287)
.....+...|+.++|.+++....++. ||...- -.++..+ ...++.+.+.+.+++..+..- .+. ....+|=.
T Consensus 268 ~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p--~~~~~~ll~sLg~ 343 (409)
T TIGR00540 268 ALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVD--DKPKCCINRALGQ 343 (409)
T ss_pred HHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCC--CChhHHHHHHHHH
Confidence 44456788888888888888877643 333210 0133332 335677888888877765432 122 23446667
Q ss_pred HHHHcCCHhHHHHHHHHHHHCCCCCChHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHH
Q 047178 189 IYYRNNMLERLIKLFKGLEAFDRKPPEKSIVQRVADAYEVLGLLEEKERVLEKYKDLF 246 (287)
Q Consensus 189 gY~k~G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~G~leeA~~ll~~m~~l~ 246 (287)
.|.+.|++++|.+.|+.-......||. ..+..+...+.+.|+.++|.+++.+-..+.
T Consensus 344 l~~~~~~~~~A~~~le~a~a~~~~p~~-~~~~~La~ll~~~g~~~~A~~~~~~~l~~~ 400 (409)
T TIGR00540 344 LLMKHGEFIEAADAFKNVAACKEQLDA-NDLAMAADAFDQAGDKAEAAAMRQDSLGLM 400 (409)
T ss_pred HHHHcccHHHHHHHHHHhHHhhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 788999999999999854444557885 668889999999999999999887654443
No 83
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=95.58 E-value=0.04 Score=39.15 Aligned_cols=55 Identities=15% Similarity=0.196 Sum_probs=42.0
Q ss_pred HHHccchhhHHHHHHHHHHCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhhhCC
Q 047178 119 LEKEQQWHRVVQVIKWMLSKGQGSTMGTCGQLIRALDMDHRAEEAHKFWEKRIGID 174 (287)
Q Consensus 119 L~k~~~~~~A~qv~~~M~~~G~~pd~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g 174 (287)
|.+.|++.+|+++|+.+.... +-+...+-.|..+|.+.|++++|..+|+++...+
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~ 55 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQD 55 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG
T ss_pred ChhccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 346788899999998887652 2256667778999999999999999999887654
No 84
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=95.55 E-value=0.55 Score=47.18 Aligned_cols=130 Identities=16% Similarity=0.145 Sum_probs=97.5
Q ss_pred HHHHHHHHHHHHHccchhhHHHHHHHHHHCCCCCChhHH-HHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHH
Q 047178 109 VGSLKKALLALEKEQQWHRVVQVIKWMLSKGQGSTMGTC-GQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMI 187 (287)
Q Consensus 109 ~~s~~~ai~~L~k~~~~~~A~qv~~~M~~~G~~pd~~TY-naLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmI 187 (287)
..-+..++..+ ..++.++|+..+..++.. .||-.-| ....+-+.+.++.++|.+.|+++....-.. ++. +=.+=
T Consensus 307 aa~YG~A~~~~-~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~-~~l-~~~~a 381 (484)
T COG4783 307 AAQYGRALQTY-LAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNS-PLL-QLNLA 381 (484)
T ss_pred HHHHHHHHHHH-HhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCc-cHH-HHHHH
Confidence 44556666654 467889999999987653 4554444 556788999999999999999998765321 332 33355
Q ss_pred HHHHHcCCHhHHHHHHHHHHHCCCCCChHHHHHHHHHHHHhcCCHHHHHHHHHHHhHH
Q 047178 188 AIYYRNNMLERLIKLFKGLEAFDRKPPEKSIVQRVADAYEVLGLLEEKERVLEKYKDL 245 (287)
Q Consensus 188 sgY~k~G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~G~leeA~~ll~~m~~l 245 (287)
.+|.+.|++.+|+.++++-.... |+....|..|-.+|...|+..++..-..++..+
T Consensus 382 ~all~~g~~~eai~~L~~~~~~~--p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~ 437 (484)
T COG4783 382 QALLKGGKPQEAIRILNRYLFND--PEDPNGWDLLAQAYAELGNRAEALLARAEGYAL 437 (484)
T ss_pred HHHHhcCChHHHHHHHHHHhhcC--CCCchHHHHHHHHHHHhCchHHHHHHHHHHHHh
Confidence 78899999999999999877553 444577999999999999999988877665433
No 85
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=95.53 E-value=0.52 Score=39.77 Aligned_cols=101 Identities=10% Similarity=-0.002 Sum_probs=69.7
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCC-hhhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChHHHHHHHH
Q 047178 145 GTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVP-WQLCKSMIAIYYRNNMLERLIKLFKGLEAFDRKPPEKSIVQRVA 223 (287)
Q Consensus 145 ~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~-~~tyNsmIsgY~k~G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI 223 (287)
..|..+...+-..|+.++|...|++.......+.. ..+|..|=..|.+.|++++|+..|...... .|+...++..+.
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~--~~~~~~~~~~la 113 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER--NPFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCcHHHHHHHH
Confidence 45666777777889999999999987654221111 136777778889999999999999887754 454334455666
Q ss_pred HHHH-------hcCCHHHHHHHHHHHhHHHh
Q 047178 224 DAYE-------VLGLLEEKERVLEKYKDLFT 247 (287)
Q Consensus 224 ~a~~-------k~G~leeA~~ll~~m~~l~~ 247 (287)
..|. ..|++++|...+++-...|.
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~ 144 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQAAEYWK 144 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHHHHHHHH
Confidence 5666 77888877777766555443
No 86
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=95.48 E-value=0.82 Score=51.19 Aligned_cols=126 Identities=19% Similarity=0.176 Sum_probs=83.3
Q ss_pred HHHHHHHHHHccchhhHHHHHHHHHHCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCCh----hhHHHHH
Q 047178 112 LKKALLALEKEQQWHRVVQVIKWMLSKGQGSTMGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPW----QLCKSMI 187 (287)
Q Consensus 112 ~~~ai~~L~k~~~~~~A~qv~~~M~~~G~~pd~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~----~tyNsmI 187 (287)
+..++..|.+.+++++|.++++.|.++ ++-..-+|...++.+.+...-+.|++++.+-... +|- -.-.-.+
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~----lPk~eHv~~IskfA 1607 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKS----LPKQEHVEFISKFA 1607 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh----cchhhhHHHHHHHH
Confidence 445666777788888888888888765 2245567888888888888777777777765432 121 0112222
Q ss_pred HHHHHcCCHhHHHHHHHHHHHCCCCCChHHHHHHHHHHHHhcCCHHHHHHHHHHHhH
Q 047178 188 AIYYRNNMLERLIKLFKGLEAFDRKPPEKSIVQRVADAYEVLGLLEEKERVLEKYKD 244 (287)
Q Consensus 188 sgY~k~G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~G~leeA~~ll~~m~~ 244 (287)
..=.++|..+.+..+|......--+- .-.|+..|+.=.++|..+.++.||+...+
T Consensus 1608 qLEFk~GDaeRGRtlfEgll~ayPKR--tDlW~VYid~eik~~~~~~vR~lfeRvi~ 1662 (1710)
T KOG1070|consen 1608 QLEFKYGDAERGRTLFEGLLSAYPKR--TDLWSVYIDMEIKHGDIKYVRDLFERVIE 1662 (1710)
T ss_pred HHHhhcCCchhhHHHHHHHHhhCccc--hhHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 33356777777777887776654322 22378888888888888888888875443
No 87
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=95.47 E-value=0.75 Score=42.83 Aligned_cols=121 Identities=14% Similarity=0.045 Sum_probs=90.9
Q ss_pred HHHHHHHccchhhHHHHHHHHHHCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHcC
Q 047178 115 ALLALEKEQQWHRVVQVIKWMLSKGQGSTMGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNN 194 (287)
Q Consensus 115 ai~~L~k~~~~~~A~qv~~~M~~~G~~pd~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~G 194 (287)
....+.+.|++..|+.+|.+... .-.+|-.+||.+=-+|.+.|++++|..-|.+-.+-.. -....+|-|--.|.-.|
T Consensus 106 ~gk~~~~~g~~~~A~~~~rkA~~-l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~--~~p~~~nNlgms~~L~g 182 (257)
T COG5010 106 QGKNQIRNGNFGEAVSVLRKAAR-LAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAP--NEPSIANNLGMSLLLRG 182 (257)
T ss_pred HHHHHHHhcchHHHHHHHHHHhc-cCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhcc--CCchhhhhHHHHHHHcC
Confidence 44556788899999988888654 4567888999999999999999999998888765322 12234666666778889
Q ss_pred CHhHHHHHHHHHHHCCCCCChHHHHHHHHHHHHhcCCHHHHHHHHH
Q 047178 195 MLERLIKLFKGLEAFDRKPPEKSIVQRVADAYEVLGLLEEKERVLE 240 (287)
Q Consensus 195 ~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~G~leeA~~ll~ 240 (287)
+.++|..++..-...+-... ..-.-+.-+....|++++|+.+-.
T Consensus 183 d~~~A~~lll~a~l~~~ad~--~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 183 DLEDAETLLLPAYLSPAADS--RVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred CHHHHHHHHHHHHhCCCCch--HHHHHHHHHHhhcCChHHHHhhcc
Confidence 99999999998888776543 334555557888899999987753
No 88
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=95.45 E-value=0.27 Score=45.69 Aligned_cols=118 Identities=14% Similarity=0.085 Sum_probs=87.0
Q ss_pred HHHccchhhHHHHHHHHHHCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHcCCHhH
Q 047178 119 LEKEQQWHRVVQVIKWMLSKGQGSTMGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNNMLER 198 (287)
Q Consensus 119 L~k~~~~~~A~qv~~~M~~~G~~pd~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~G~~ee 198 (287)
+.-.|+-+...-+..... .....|...-++++....+.|++.+|..+|.+..... +.+|-+||-+=-+|-+.|++++
T Consensus 76 ~~~~G~a~~~l~~~~~~~-~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~--p~d~~~~~~lgaaldq~Gr~~~ 152 (257)
T COG5010 76 LYLRGDADSSLAVLQKSA-IAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA--PTDWEAWNLLGAALDQLGRFDE 152 (257)
T ss_pred HHhcccccchHHHHhhhh-ccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC--CCChhhhhHHHHHHHHccChhH
Confidence 334444444444333311 1233454556668889999999999999999987754 4678899999999999999999
Q ss_pred HHHHHHHHHHCCCCCChHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 047178 199 LIKLFKGLEAFDRKPPEKSIVQRVADAYEVLGLLEEKERVLEK 241 (287)
Q Consensus 199 A~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~G~leeA~~ll~~ 241 (287)
|..-|.+-.+. .|++...+|-|.-.|.-.|+++.|+.++.+
T Consensus 153 Ar~ay~qAl~L--~~~~p~~~nNlgms~~L~gd~~~A~~lll~ 193 (257)
T COG5010 153 ARRAYRQALEL--APNEPSIANNLGMSLLLRGDLEDAETLLLP 193 (257)
T ss_pred HHHHHHHHHHh--ccCCchhhhhHHHHHHHcCCHHHHHHHHHH
Confidence 99999876653 444445577777788889999999999864
No 89
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=95.44 E-value=0.39 Score=44.75 Aligned_cols=122 Identities=11% Similarity=0.108 Sum_probs=81.5
Q ss_pred HHHccchhhHHHHHHHHHHCCCCCChhHHHH---HHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHcCC
Q 047178 119 LEKEQQWHRVVQVIKWMLSKGQGSTMGTCGQ---LIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNNM 195 (287)
Q Consensus 119 L~k~~~~~~A~qv~~~M~~~G~~pd~~TYna---LI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~G~ 195 (287)
+...|+.++|..++....+. .+.|...++. +.......|..+.+.+.++... .. .+.....+..+-..|...|+
T Consensus 53 ~~~~g~~~~A~~~~~~~l~~-~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~-~~~~~~~~~~~a~~~~~~G~ 129 (355)
T cd05804 53 AWIAGDLPKALALLEQLLDD-YPRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWA-PE-NPDYWYLLGMLAFGLEEAGQ 129 (355)
T ss_pred HHHcCCHHHHHHHHHHHHHH-CCCcHHHHHHhHHHHHhcccccCchhHHHHHhccC-cC-CCCcHHHHHHHHHHHHHcCC
Confidence 45668899999999887764 2334445442 2222234566677776665521 11 11112233444567789999
Q ss_pred HhHHHHHHHHHHHCCCCCChHHHHHHHHHHHHhcCCHHHHHHHHHHHhHH
Q 047178 196 LERLIKLFKGLEAFDRKPPEKSIVQRVADAYEVLGLLEEKERVLEKYKDL 245 (287)
Q Consensus 196 ~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~G~leeA~~ll~~m~~l 245 (287)
+++|...|++..+.. |+....+..+-..|...|++++|...+++...+
T Consensus 130 ~~~A~~~~~~al~~~--p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~ 177 (355)
T cd05804 130 YDRAEEAARRALELN--PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDT 177 (355)
T ss_pred HHHHHHHHHHHHhhC--CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhc
Confidence 999999999998754 554566788888999999999999998875554
No 90
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=95.41 E-value=0.5 Score=49.79 Aligned_cols=100 Identities=15% Similarity=0.051 Sum_probs=83.7
Q ss_pred CCCChhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCC-hhhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChHHH
Q 047178 140 QGSTMGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVP-WQLCKSMIAIYYRNNMLERLIKLFKGLEAFDRKPPEKSI 218 (287)
Q Consensus 140 ~~pd~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~-~~tyNsmIsgY~k~G~~eeA~~Lf~eM~~~Gi~PD~~~T 218 (287)
+..++..|--|-...-..|+.|+|+.+|+...+.. |+ ....-.+..++.+.+++++|+..++..... .||....
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~---Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~ 156 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF---PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSARE 156 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC---CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHH
Confidence 44567778888888999999999999999998753 23 235677889999999999999999998765 5777777
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhH
Q 047178 219 VQRVADAYEVLGLLEEKERVLEKYKD 244 (287)
Q Consensus 219 y~sLI~a~~k~G~leeA~~ll~~m~~ 244 (287)
...+-.++...|..++|..+|++...
T Consensus 157 ~~~~a~~l~~~g~~~~A~~~y~~~~~ 182 (694)
T PRK15179 157 ILLEAKSWDEIGQSEQADACFERLSR 182 (694)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHh
Confidence 88888899999999999999987654
No 91
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=95.37 E-value=1.3 Score=38.84 Aligned_cols=131 Identities=13% Similarity=0.015 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHccchhhHHHHHHHHHHCCCCCC----hhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChh--hHH
Q 047178 111 SLKKALLALEKEQQWHRVVQVIKWMLSKGQGST----MGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQ--LCK 184 (287)
Q Consensus 111 s~~~ai~~L~k~~~~~~A~qv~~~M~~~G~~pd----~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~--tyN 184 (287)
.+......+...|++++|...++...... |+ ..++..+-.+|-+.|+.++|...|+++.+..-.. +.. .+.
T Consensus 35 ~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~-~~~~~a~~ 111 (235)
T TIGR03302 35 ELYEEAKEALDSGDYTEAIKYFEALESRY--PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNH-PDADYAYY 111 (235)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCC-CchHHHHH
Confidence 33445556778899999999998876632 32 2356778889999999999999999998754211 111 233
Q ss_pred HHHHHHHHc--------CCHhHHHHHHHHHHHCCCCCChHHHHH-----------------HHHHHHHhcCCHHHHHHHH
Q 047178 185 SMIAIYYRN--------NMLERLIKLFKGLEAFDRKPPEKSIVQ-----------------RVADAYEVLGLLEEKERVL 239 (287)
Q Consensus 185 smIsgY~k~--------G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~-----------------sLI~a~~k~G~leeA~~ll 239 (287)
.+=.+|.+. |++++|.+.|...... .|+....+. .+-..|.+.|+.++|...+
T Consensus 112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~ 189 (235)
T TIGR03302 112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRF 189 (235)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 333344443 7899999999999865 344322211 2345677889999999888
Q ss_pred HHHhHHH
Q 047178 240 EKYKDLF 246 (287)
Q Consensus 240 ~~m~~l~ 246 (287)
.+....+
T Consensus 190 ~~al~~~ 196 (235)
T TIGR03302 190 ETVVENY 196 (235)
T ss_pred HHHHHHC
Confidence 7765543
No 92
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=95.23 E-value=0.041 Score=41.25 Aligned_cols=81 Identities=14% Similarity=0.120 Sum_probs=55.4
Q ss_pred ccchhhHHHHHHHHHHCCCC-CChhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHcCCHhHHH
Q 047178 122 EQQWHRVVQVIKWMLSKGQG-STMGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNNMLERLI 200 (287)
Q Consensus 122 ~~~~~~A~qv~~~M~~~G~~-pd~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~G~~eeA~ 200 (287)
.++++.|+.+++.+.+..-. ++...+-.|-.+|.+.|+.++|..++++ ...+.. .+...| .+-.+|.+.|++++|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~-~~~~~~-l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPS-NPDIHY-LLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHC-HHHHHH-HHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCC-CHHHHH-HHHHHHHHhCCHHHHH
Confidence 46788999999998875432 2334444489999999999999999988 322211 112223 3356688999999999
Q ss_pred HHHHH
Q 047178 201 KLFKG 205 (287)
Q Consensus 201 ~Lf~e 205 (287)
+.|.+
T Consensus 79 ~~l~~ 83 (84)
T PF12895_consen 79 KALEK 83 (84)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 99875
No 93
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.23 E-value=0.1 Score=42.90 Aligned_cols=68 Identities=12% Similarity=0.197 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHcCCHhHHHHHHHHHH-----HCCCCCCh
Q 047178 146 TCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNNMLERLIKLFKGLE-----AFDRKPPE 215 (287)
Q Consensus 146 TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~G~~eeA~~Lf~eM~-----~~Gi~PD~ 215 (287)
+...++..+...|+.++|..+...+...+ |.+...|-.+|.+|...|+..+|++.|..+. +.|+.|..
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d--P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~ 136 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD--PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSP 136 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS--TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----H
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCH
Confidence 45667778888999999999999998765 2455689999999999999999999999884 56999984
No 94
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=95.23 E-value=1.4 Score=42.72 Aligned_cols=121 Identities=12% Similarity=0.126 Sum_probs=83.3
Q ss_pred HHHHHHHccchhhHHHHHHHHHHCCCCCChhHHH-------HHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHH
Q 047178 115 ALLALEKEQQWHRVVQVIKWMLSKGQGSTMGTCG-------QLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMI 187 (287)
Q Consensus 115 ai~~L~k~~~~~~A~qv~~~M~~~G~~pd~~TYn-------aLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmI 187 (287)
+=+.+...|..++|+.+|.-+.++ ||. |++ .|=.=|...|-+|.|+.+|..+.+.+-... -.---|+
T Consensus 75 LGnLfRsRGEvDRAIRiHQ~L~~s---pdl-T~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~--~AlqqLl 148 (389)
T COG2956 75 LGNLFRSRGEVDRAIRIHQTLLES---PDL-TFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAE--GALQQLL 148 (389)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcC---CCC-chHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhH--HHHHHHH
Confidence 334567889999999999998765 663 443 345557889999999999999987543222 2456789
Q ss_pred HHHHHcCCHhHHHHHHHHHHHCCCCCChH---HHHHHHHHHHHhcCCHHHHHHHHHH
Q 047178 188 AIYYRNNMLERLIKLFKGLEAFDRKPPEK---SIVQRVADAYEVLGLLEEKERVLEK 241 (287)
Q Consensus 188 sgY~k~G~~eeA~~Lf~eM~~~Gi~PD~~---~Ty~sLI~a~~k~G~leeA~~ll~~ 241 (287)
..|-+...+++|++.-.++...|-.+..+ -.|.-|-..+--..+++.|..++.+
T Consensus 149 ~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 149 NIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 99999999999999999998877554421 1223333333334455555555543
No 95
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=95.21 E-value=0.13 Score=36.34 Aligned_cols=55 Identities=16% Similarity=0.129 Sum_probs=34.4
Q ss_pred HHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHcCCHhHHHHHHHHHHH
Q 047178 152 RALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNNMLERLIKLFKGLEA 208 (287)
Q Consensus 152 ~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~G~~eeA~~Lf~eM~~ 208 (287)
..|.+.|++++|.++|++....+- -..-.|..+=..|.+.|++++|..+|++..+
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~P--~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQDP--DNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCST--THHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 456677777777777777766541 1223455566667777777777777776654
No 96
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=95.18 E-value=0.76 Score=39.81 Aligned_cols=93 Identities=8% Similarity=-0.071 Sum_probs=70.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChHHHHHHHHHHHHhc
Q 047178 150 LIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNNMLERLIKLFKGLEAFDRKPPEKSIVQRVADAYEVL 229 (287)
Q Consensus 150 LI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~ 229 (287)
+=.-+...|++++|+.+|+-...-+.. .. ..|-.|=.+|-..|++++|+..|....... ||....|--+-.++...
T Consensus 41 ~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~-~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~--~ddp~~~~~ag~c~L~l 116 (157)
T PRK15363 41 YAMQLMEVKEFAGAARLFQLLTIYDAW-SF-DYWFRLGECCQAQKHWGEAIYAYGRAAQIK--IDAPQAPWAAAECYLAC 116 (157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcc-cH-HHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--CCCchHHHHHHHHHHHc
Confidence 334467899999999999988766531 12 234456667778999999999999887765 55556666667789999
Q ss_pred CCHHHHHHHHHHHhHHH
Q 047178 230 GLLEEKERVLEKYKDLF 246 (287)
Q Consensus 230 G~leeA~~ll~~m~~l~ 246 (287)
|+.+.|++-|+.....-
T Consensus 117 G~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 117 DNVCYAIKALKAVVRIC 133 (157)
T ss_pred CCHHHHHHHHHHHHHHh
Confidence 99999999998766544
No 97
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=95.14 E-value=1.1 Score=45.60 Aligned_cols=130 Identities=14% Similarity=0.094 Sum_probs=99.2
Q ss_pred HHHHHHHccchhhHHHHHHHHHHCCCCCCh-hHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHc
Q 047178 115 ALLALEKEQQWHRVVQVIKWMLSKGQGSTM-GTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRN 193 (287)
Q Consensus 115 ai~~L~k~~~~~~A~qv~~~M~~~G~~pd~-~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~ 193 (287)
+...+...|++++|+++++.-++ +.|+. -.|.+--..|-+.|++++|.+..++-...+. .+.+.-|--+..+-|+
T Consensus 200 lAqhyd~~g~~~~Al~~Id~aI~--htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~--~DRyiNsK~aKy~LRa 275 (517)
T PF12569_consen 200 LAQHYDYLGDYEKALEYIDKAIE--HTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDL--ADRYINSKCAKYLLRA 275 (517)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCh--hhHHHHHHHHHHHHHC
Confidence 34456789999999999998766 45663 4577778889999999999999999887775 3555556666777799
Q ss_pred CCHhHHHHHHHHHHHCCCCCChHHH--------HHHHHHHHHhcCCHHHHHHHHHHHhHHHhhh
Q 047178 194 NMLERLIKLFKGLEAFDRKPPEKSI--------VQRVADAYEVLGLLEEKERVLEKYKDLFTEK 249 (287)
Q Consensus 194 G~~eeA~~Lf~eM~~~Gi~PD~~~T--------y~sLI~a~~k~G~leeA~~ll~~m~~l~~~~ 249 (287)
|++++|.+++..--..+..|-. -. ..-.-.+|.+.|++..|++-|..+...|..+
T Consensus 276 ~~~e~A~~~~~~Ftr~~~~~~~-~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~ 338 (517)
T PF12569_consen 276 GRIEEAEKTASLFTREDVDPLS-NLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDDF 338 (517)
T ss_pred CCHHHHHHHHHhhcCCCCCccc-CHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 9999999999888777764431 11 1334568999999999998888777766643
No 98
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.10 E-value=0.064 Score=39.31 Aligned_cols=65 Identities=15% Similarity=0.295 Sum_probs=41.9
Q ss_pred hHHHHHHHHHHcCCHhHHHHHHHHHHHC----C-CCCChHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHH
Q 047178 182 LCKSMIAIYYRNNMLERLIKLFKGLEAF----D-RKPPEKSIVQRVADAYEVLGLLEEKERVLEKYKDLF 246 (287)
Q Consensus 182 tyNsmIsgY~k~G~~eeA~~Lf~eM~~~----G-i~PD~~~Ty~sLI~a~~k~G~leeA~~ll~~m~~l~ 246 (287)
+|+.|=..|...|++++|+..|++...- | -.|+.+.++..+-..|...|++++|++.+++..+++
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF 76 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 4666666677777777777777665432 2 113334566777777888888888888887766654
No 99
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=94.90 E-value=0.2 Score=46.57 Aligned_cols=95 Identities=16% Similarity=0.125 Sum_probs=68.2
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChHHHHHHHHH
Q 047178 145 GTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNNMLERLIKLFKGLEAFDRKPPEKSIVQRVAD 224 (287)
Q Consensus 145 ~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~ 224 (287)
.+|-.+++..-+.+.++.|+.+|.+-...+-.....+...++|- |...+..+.|..+|+..... + |+....+..-|+
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E-~~~~~d~~~A~~Ife~glk~-f-~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALME-YYCNKDPKRARKIFERGLKK-F-PSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHH-HHTCS-HHHHHHHHHHHHHH-H-TT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHH-C-CCCHHHHHHHHH
Confidence 57899999999999999999999998754421112233444443 33356677799999988764 3 333466788889
Q ss_pred HHHhcCCHHHHHHHHHHH
Q 047178 225 AYEVLGLLEEKERVLEKY 242 (287)
Q Consensus 225 a~~k~G~leeA~~ll~~m 242 (287)
-+.+.|+.+.|+.||+..
T Consensus 79 ~l~~~~d~~~aR~lfer~ 96 (280)
T PF05843_consen 79 FLIKLNDINNARALFERA 96 (280)
T ss_dssp HHHHTT-HHHHHHHHHHH
T ss_pred HHHHhCcHHHHHHHHHHH
Confidence 999999999999999853
No 100
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=94.69 E-value=0.2 Score=52.93 Aligned_cols=112 Identities=19% Similarity=0.282 Sum_probs=78.7
Q ss_pred HHHHHHHHHccchhhHHHHHHHHHHCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHH
Q 047178 113 KKALLALEKEQQWHRVVQVIKWMLSKGQGSTMGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYR 192 (287)
Q Consensus 113 ~~ai~~L~k~~~~~~A~qv~~~M~~~G~~pd~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k 192 (287)
.+++..--..++|.+|+.+++.+..+.. -..-|.-+-+-|+..|.++-|+++|-+- |+ ++--|..|.+
T Consensus 736 ~kaieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~---~~-------~~dai~my~k 803 (1636)
T KOG3616|consen 736 IKAIEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEA---DL-------FKDAIDMYGK 803 (1636)
T ss_pred HHHHHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhc---ch-------hHHHHHHHhc
Confidence 3555556667889999999887765422 2234777788899999999999999763 32 6778999999
Q ss_pred cCCHhHHHHHHHHHHHCCCCCChHHHHHHHHHHHHhcCCHHHHHHHH
Q 047178 193 NNMLERLIKLFKGLEAFDRKPPEKSIVQRVADAYEVLGLLEEKERVL 239 (287)
Q Consensus 193 ~G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~G~leeA~~ll 239 (287)
+|++++|++|-.+. .|-... .+.|-+-..-+-+.|++.+|++++
T Consensus 804 ~~kw~da~kla~e~--~~~e~t-~~~yiakaedldehgkf~eaeqly 847 (1636)
T KOG3616|consen 804 AGKWEDAFKLAEEC--HGPEAT-ISLYIAKAEDLDEHGKFAEAEQLY 847 (1636)
T ss_pred cccHHHHHHHHHHh--cCchhH-HHHHHHhHHhHHhhcchhhhhhee
Confidence 99999999986543 333322 344555455566677777777664
No 101
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=94.67 E-value=0.069 Score=44.34 Aligned_cols=88 Identities=17% Similarity=0.151 Sum_probs=59.7
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHhhhCC---------CC-----CCChhhHHHHHHHHHHcCCHhHHHHHHHHHH-
Q 047178 143 TMGTCGQLIRALDMDHRAEEAHKFWEKRIGID---------LH-----SVPWQLCKSMIAIYYRNNMLERLIKLFKGLE- 207 (287)
Q Consensus 143 d~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g---------~~-----sv~~~tyNsmIsgY~k~G~~eeA~~Lf~eM~- 207 (287)
|..++.++|-++++.|+++..+.+.+..=.-+ +. .|+..+-.+++.+|+.+|++..|+++.+...
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~ 80 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR 80 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 45688999999999999999998887642111 10 0122456777888888888888888777664
Q ss_pred HCCCCCChHHHHHHHHHHHHhcCC
Q 047178 208 AFDRKPPEKSIVQRVADAYEVLGL 231 (287)
Q Consensus 208 ~~Gi~PD~~~Ty~sLI~a~~k~G~ 231 (287)
..++.-+ ..++..|+.-+...-+
T Consensus 81 ~Y~I~i~-~~~W~~Ll~W~~v~s~ 103 (126)
T PF12921_consen 81 KYPIPIP-KEFWRRLLEWAYVLSS 103 (126)
T ss_pred HcCCCCC-HHHHHHHHHHHHHhcC
Confidence 3466555 3667777765555444
No 102
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=94.66 E-value=1.2 Score=37.51 Aligned_cols=113 Identities=10% Similarity=0.004 Sum_probs=73.6
Q ss_pred HHHHHHHccchhhHHHHHHHHHHCCCCC--ChhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHH-
Q 047178 115 ALLALEKEQQWHRVVQVIKWMLSKGQGS--TMGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYY- 191 (287)
Q Consensus 115 ai~~L~k~~~~~~A~qv~~~M~~~G~~p--d~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~- 191 (287)
....+...+++++|+..|.......-.+ ...+|..|=..|.+.|+.++|...|++.....- ....+++.+-..|.
T Consensus 41 ~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~--~~~~~~~~la~i~~~ 118 (168)
T CHL00033 41 DGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNP--FLPQALNNMAVICHY 118 (168)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc--CcHHHHHHHHHHHHH
Confidence 3444556788999999888876543222 234788888889999999999999999876431 12235677777777
Q ss_pred ------HcCCHhHHHHHHHHHH-----HCCCCCChHHHHHHHHHHHHhcCCH
Q 047178 192 ------RNNMLERLIKLFKGLE-----AFDRKPPEKSIVQRVADAYEVLGLL 232 (287)
Q Consensus 192 ------k~G~~eeA~~Lf~eM~-----~~Gi~PD~~~Ty~sLI~a~~k~G~l 232 (287)
+.|++++|...|.+=. ..|..|+. +..+...+...|.+
T Consensus 119 ~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~---~~~~~~~~~~~~~~ 167 (168)
T CHL00033 119 RGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGN---YIEAQNWLKITGRF 167 (168)
T ss_pred hhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCccc---HHHHHHHHHHhcCC
Confidence 7888886666665432 23455653 34444445555543
No 103
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=94.56 E-value=0.89 Score=47.45 Aligned_cols=124 Identities=15% Similarity=0.191 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHccchhhHHHHHHHHHHCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCCh--hhHHHHHH
Q 047178 111 SLKKALLALEKEQQWHRVVQVIKWMLSKGQGSTMGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPW--QLCKSMIA 188 (287)
Q Consensus 111 s~~~ai~~L~k~~~~~~A~qv~~~M~~~G~~pd~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~--~tyNsmIs 188 (287)
.++.+-..|-..|++.+|.+.+..-+.. +....-+-|-|=+.|...|++++|..+|..-.+-. |. -.+|-|-.
T Consensus 322 Ay~NlanALkd~G~V~ea~~cYnkaL~l-~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~----p~~aaa~nNLa~ 396 (966)
T KOG4626|consen 322 AYNNLANALKDKGSVTEAVDCYNKALRL-CPNHADAMNNLGNIYREQGKIEEATRLYLKALEVF----PEFAAAHNNLAS 396 (966)
T ss_pred HHhHHHHHHHhccchHHHHHHHHHHHHh-CCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhC----hhhhhhhhhHHH
Confidence 3444555666777888887777665542 22233456778888888888888888888776521 22 24788888
Q ss_pred HHHHcCCHhHHHHHHHHHHHCCCCCChHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 047178 189 IYYRNNMLERLIKLFKGLEAFDRKPPEKSIVQRVADAYEVLGLLEEKERVLEK 241 (287)
Q Consensus 189 gY~k~G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~G~leeA~~ll~~ 241 (287)
.|-+.|++++|+.-+++-. .+.|+-+-.|+-+-..|-..|+++.|.+...+
T Consensus 397 i~kqqgnl~~Ai~~Ykeal--rI~P~fAda~~NmGnt~ke~g~v~~A~q~y~r 447 (966)
T KOG4626|consen 397 IYKQQGNLDDAIMCYKEAL--RIKPTFADALSNMGNTYKEMGDVSAAIQCYTR 447 (966)
T ss_pred HHHhcccHHHHHHHHHHHH--hcCchHHHHHHhcchHHHHhhhHHHHHHHHHH
Confidence 8999999999999888755 36776555677777777788888888877654
No 104
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=94.48 E-value=0.24 Score=34.94 Aligned_cols=56 Identities=16% Similarity=0.152 Sum_probs=34.5
Q ss_pred HHHHHcCCHhHHHHHHHHHHHCCCCCChHHHHHHHHHHHHhcCCHHHHHHHHHHHhHH
Q 047178 188 AIYYRNNMLERLIKLFKGLEAFDRKPPEKSIVQRVADAYEVLGLLEEKERVLEKYKDL 245 (287)
Q Consensus 188 sgY~k~G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~G~leeA~~ll~~m~~l 245 (287)
..|.+.|++++|.+.|++..... |+..-.+..+-..+...|++++|..++++...+
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQD--PDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCS--TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34566677777777777766654 554455555666666677777777666665443
No 105
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=94.43 E-value=0.59 Score=48.39 Aligned_cols=85 Identities=19% Similarity=0.234 Sum_probs=43.2
Q ss_pred HHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChHHHHHHHHHHHHhcCC
Q 047178 152 RALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNNMLERLIKLFKGLEAFDRKPPEKSIVQRVADAYEVLGL 231 (287)
Q Consensus 152 ~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~G~ 231 (287)
..|-+.|+.|+|..+|++-...+-. .|..-|. .+..+.-.++.++|+..|+++++ +.||+.+.|-.+...|-+.|+
T Consensus 531 ~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~-~~~il~~~~~~~eal~~LEeLk~--~vP~es~v~~llgki~k~~~~ 606 (638)
T KOG1126|consen 531 RIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYH-RASILFSLGRYVEALQELEELKE--LVPQESSVFALLGKIYKRLGN 606 (638)
T ss_pred HHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHH-HHHHHHhhcchHHHHHHHHHHHH--hCcchHHHHHHHHHHHHHHcc
Confidence 3344555666666666654433321 1111233 34445555566666666666554 355555555555555666666
Q ss_pred HHHHHHHHH
Q 047178 232 LEEKERVLE 240 (287)
Q Consensus 232 leeA~~ll~ 240 (287)
.+.|..-|.
T Consensus 607 ~~~Al~~f~ 615 (638)
T KOG1126|consen 607 TDLALLHFS 615 (638)
T ss_pred chHHHHhhH
Confidence 555554443
No 106
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=94.35 E-value=2.5 Score=34.84 Aligned_cols=89 Identities=10% Similarity=0.043 Sum_probs=66.2
Q ss_pred HHHHHHHHccchhhHHHHHHHHHHCCCCCCh--hHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHH
Q 047178 114 KALLALEKEQQWHRVVQVIKWMLSKGQGSTM--GTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYY 191 (287)
Q Consensus 114 ~ai~~L~k~~~~~~A~qv~~~M~~~G~~pd~--~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~ 191 (287)
.+-..+...|++++|...|++.....-.++. ...-.|-..+...|+.++|..+++....... ....+..+=+.|.
T Consensus 53 ~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~~~---~~~~~~~~Gdi~~ 129 (145)
T PF09976_consen 53 QLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQIPDEAF---KALAAELLGDIYL 129 (145)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccCcch---HHHHHHHHHHHHH
Confidence 3445678889999999999999987633332 2344467778899999999999977543322 1134566667899
Q ss_pred HcCCHhHHHHHHHH
Q 047178 192 RNNMLERLIKLFKG 205 (287)
Q Consensus 192 k~G~~eeA~~Lf~e 205 (287)
+.|+.++|...|+.
T Consensus 130 ~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 130 AQGDYDEARAAYQK 143 (145)
T ss_pred HCCCHHHHHHHHHH
Confidence 99999999999874
No 107
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=94.12 E-value=1.4 Score=38.85 Aligned_cols=108 Identities=9% Similarity=0.088 Sum_probs=79.3
Q ss_pred HHHHHHHHHHccchhhHHHHHHHHHHCCCCCChhHHHHHHHHH-HHcCC--HHHHHHHHHHhhhCCCCCCChhhHHHHHH
Q 047178 112 LKKALLALEKEQQWHRVVQVIKWMLSKGQGSTMGTCGQLIRAL-DMDHR--AEEAHKFWEKRIGIDLHSVPWQLCKSMIA 188 (287)
Q Consensus 112 ~~~ai~~L~k~~~~~~A~qv~~~M~~~G~~pd~~TYnaLI~~y-~K~G~--leeA~~lF~eM~~~g~~sv~~~tyNsmIs 188 (287)
+..+-..+...+++++|++.++...+.. +.|...+..+-.++ ...|+ .++|.++|++....+- .+...+..+=.
T Consensus 76 w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP--~~~~al~~LA~ 152 (198)
T PRK10370 76 WALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTREMIDKALALDA--NEVTALMLLAS 152 (198)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCC--CChhHHHHHHH
Confidence 3344456678899999999998877643 23566777777764 67787 5999999999988763 23456888888
Q ss_pred HHHHcCCHhHHHHHHHHHHHCCCCCChHHHHHHHHHH
Q 047178 189 IYYRNNMLERLIKLFKGLEAFDRKPPEKSIVQRVADA 225 (287)
Q Consensus 189 gY~k~G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a 225 (287)
.|.+.|++++|+..|+.+.+.. .||+ .-+. +|.+
T Consensus 153 ~~~~~g~~~~Ai~~~~~aL~l~-~~~~-~r~~-~i~~ 186 (198)
T PRK10370 153 DAFMQADYAQAIELWQKVLDLN-SPRV-NRTQ-LVES 186 (198)
T ss_pred HHHHcCCHHHHHHHHHHHHhhC-CCCc-cHHH-HHHH
Confidence 9999999999999999998754 4553 4333 3344
No 108
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=94.06 E-value=0.31 Score=52.47 Aligned_cols=120 Identities=14% Similarity=0.136 Sum_probs=90.5
Q ss_pred ccchhhHHHHHHHHHHCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHcCCHhHHHH
Q 047178 122 EQQWHRVVQVIKWMLSKGQGSTMGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNNMLERLIK 201 (287)
Q Consensus 122 ~~~~~~A~qv~~~M~~~G~~pd~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~G~~eeA~~ 201 (287)
.+...+|+++|...+.. .+.|+..-|-+=-.|+..|++++|..+|.+..+....-.+ +|=-+=++|.-.|++-.|++
T Consensus 625 kk~~~KAlq~y~kvL~~-dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~d--v~lNlah~~~e~~qy~~AIq 701 (1018)
T KOG2002|consen 625 KKHQEKALQLYGKVLRN-DPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFED--VWLNLAHCYVEQGQYRLAIQ 701 (1018)
T ss_pred HHHHHHHHHHHHHHHhc-CcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCc--eeeeHHHHHHHHHHHHHHHH
Confidence 34577889999887763 3457777787877899999999999999999874321112 25557899999999999999
Q ss_pred HHHHHHHCCCCCChHHHHHHHHHHHHhcCCHHHHHHHHHHHhH
Q 047178 202 LFKGLEAFDRKPPEKSIVQRVADAYEVLGLLEEKERVLEKYKD 244 (287)
Q Consensus 202 Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~G~leeA~~ll~~m~~ 244 (287)
+|+.-...=.+-|.......|-.++...|.+.+|.+.+....+
T Consensus 702 mYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~ 744 (1018)
T KOG2002|consen 702 MYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARH 744 (1018)
T ss_pred HHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 9998765544333345678888899999999999987654333
No 109
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=93.76 E-value=1.2 Score=44.74 Aligned_cols=63 Identities=6% Similarity=-0.060 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHccchhhHHHHHHHHHHCCCCCCh----hHHHHHHHHHHHcCCHHHHHHHHHHhhhC
Q 047178 109 VGSLKKALLALEKEQQWHRVVQVIKWMLSKGQGSTM----GTCGQLIRALDMDHRAEEAHKFWEKRIGI 173 (287)
Q Consensus 109 ~~s~~~ai~~L~k~~~~~~A~qv~~~M~~~G~~pd~----~TYnaLI~~y~K~G~leeA~~lF~eM~~~ 173 (287)
...+...=..|.+.|++++|+..|+.-++. .||. .+|..+-.+|.+.|++++|.+.|++..+.
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 445555566778889999999988886653 4653 35888899999999999999999888764
No 110
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=93.28 E-value=1.4 Score=40.87 Aligned_cols=98 Identities=10% Similarity=0.077 Sum_probs=70.0
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCC--ChhhHHHHHHHHHHcCCHhHHHHHHHHHHHC----CCCCChHHH
Q 047178 145 GTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSV--PWQLCKSMIAIYYRNNMLERLIKLFKGLEAF----DRKPPEKSI 218 (287)
Q Consensus 145 ~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv--~~~tyNsmIsgY~k~G~~eeA~~Lf~eM~~~----Gi~PD~~~T 218 (287)
..|..-+.-+.+.|+.++|...|+......-.+. + ..+--+-..|...|++++|...|..+... ...||.
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~-~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dA--- 219 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQP-NANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADA--- 219 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHH---
Confidence 4577777777788999999999999987542111 1 13445667889999999999999999753 233442
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhHHH
Q 047178 219 VQRVADAYEVLGLLEEKERVLEKYKDLF 246 (287)
Q Consensus 219 y~sLI~a~~k~G~leeA~~ll~~m~~l~ 246 (287)
+-.+...|...|+.++|..++++....|
T Consensus 220 l~klg~~~~~~g~~~~A~~~~~~vi~~y 247 (263)
T PRK10803 220 MFKVGVIMQDKGDTAKAKAVYQQVIKKY 247 (263)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 2334456778999999999988766554
No 111
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.98 E-value=1.5 Score=41.29 Aligned_cols=109 Identities=16% Similarity=0.071 Sum_probs=76.6
Q ss_pred HHHHHHccchhhHHHHHHHHHHCCCCCChhHHHH----HHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHH
Q 047178 116 LLALEKEQQWHRVVQVIKWMLSKGQGSTMGTCGQ----LIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYY 191 (287)
Q Consensus 116 i~~L~k~~~~~~A~qv~~~M~~~G~~pd~~TYna----LI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~ 191 (287)
+..+-+..+++-|.+.++.|.+- -+-.|-+- .|+...-.+.+.+|.-+|++|.++-. +++-+-|-+-.+..
T Consensus 144 VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~--~T~~llnG~Av~~l 218 (299)
T KOG3081|consen 144 VQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTP--PTPLLLNGQAVCHL 218 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccC--CChHHHccHHHHHH
Confidence 34466777888888888998763 33345554 44444456689999999999988642 45567788888888
Q ss_pred HcCCHhHHHHHHHHHHHCCCC-CChHHHHHHHHHHHHhcCCH
Q 047178 192 RNNMLERLIKLFKGLEAFDRK-PPEKSIVQRVADAYEVLGLL 232 (287)
Q Consensus 192 k~G~~eeA~~Lf~eM~~~Gi~-PD~~~Ty~sLI~a~~k~G~l 232 (287)
..|++++|..++.+-....-. |+ +.-|.++.+. ..|.-
T Consensus 219 ~~~~~eeAe~lL~eaL~kd~~dpe--tL~Nliv~a~-~~Gkd 257 (299)
T KOG3081|consen 219 QLGRYEEAESLLEEALDKDAKDPE--TLANLIVLAL-HLGKD 257 (299)
T ss_pred HhcCHHHHHHHHHHHHhccCCCHH--HHHHHHHHHH-HhCCC
Confidence 999999999999999877644 33 3345555443 44543
No 112
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=92.90 E-value=0.29 Score=44.73 Aligned_cols=67 Identities=15% Similarity=0.156 Sum_probs=43.1
Q ss_pred HHHHHHHHHHccCCCCHHHHHHHHHHHHHc----------------cchhhHHHHHHHHHHCCCCCChhHHHHHHHHHHH
Q 047178 93 VYGTLDAWVAWEQNFPVGSLKKALLALEKE----------------QQWHRVVQVIKWMLSKGQGSTMGTCGQLIRALDM 156 (287)
Q Consensus 93 v~~~Ld~~~~~~~~~~~~s~~~ai~~L~k~----------------~~~~~A~qv~~~M~~~G~~pd~~TYnaLI~~y~K 156 (287)
+|.+|..+.+.+..-.+..|+.+++.+=|. .+-+.|++|++.|...|+.||..|+..||+.|++
T Consensus 71 I~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~ 150 (228)
T PF06239_consen 71 IYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGR 150 (228)
T ss_pred HHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcc
Confidence 556666666666666666666666664331 2345567777777777777777777777777766
Q ss_pred cCC
Q 047178 157 DHR 159 (287)
Q Consensus 157 ~G~ 159 (287)
.+.
T Consensus 151 ~s~ 153 (228)
T PF06239_consen 151 KSH 153 (228)
T ss_pred ccH
Confidence 554
No 113
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=92.89 E-value=0.6 Score=33.40 Aligned_cols=57 Identities=12% Similarity=0.070 Sum_probs=40.5
Q ss_pred HHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHcCCHhHHHHHHHHHHHCC
Q 047178 152 RALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNNMLERLIKLFKGLEAFD 210 (287)
Q Consensus 152 ~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~G~~eeA~~Lf~eM~~~G 210 (287)
..|.+.+++++|.++++.+...+- .+...|-..=..|.+.|++++|.+.|+...+.+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p--~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDP--DDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCc--ccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 467778888888888888877542 233445556667788888888888888877543
No 114
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=92.89 E-value=4.6 Score=41.60 Aligned_cols=131 Identities=11% Similarity=0.041 Sum_probs=101.0
Q ss_pred HHHHHHHHHccchhhHHHHHHHHHHCCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHH-hhhCCCCCCChhhHHHHHHHH
Q 047178 113 KKALLALEKEQQWHRVVQVIKWMLSKGQGS-TMGTCGQLIRALDMDHRAEEAHKFWEK-RIGIDLHSVPWQLCKSMIAIY 190 (287)
Q Consensus 113 ~~ai~~L~k~~~~~~A~qv~~~M~~~G~~p-d~~TYnaLI~~y~K~G~leeA~~lF~e-M~~~g~~sv~~~tyNsmIsgY 190 (287)
...++...+..-..-|..+|....+.+..+ +++++++||.-||. ++-+-|.++|+- |...+- .|. .-+.-++-+
T Consensus 370 ~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkkf~d--~p~-yv~~YldfL 445 (656)
T KOG1914|consen 370 CQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKKFGD--SPE-YVLKYLDFL 445 (656)
T ss_pred hHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHhcCC--ChH-HHHHHHHHH
Confidence 345555566667778889999998888777 89999999999995 556889999995 443332 232 335567788
Q ss_pred HHcCCHhHHHHHHHHHHHCCCCCChH-HHHHHHHHHHHhcCCHHHHHHHHHHHhHHHh
Q 047178 191 YRNNMLERLIKLFKGLEAFDRKPPEK-SIVQRVADAYEVLGLLEEKERVLEKYKDLFT 247 (287)
Q Consensus 191 ~k~G~~eeA~~Lf~eM~~~Gi~PD~~-~Ty~sLI~a~~k~G~leeA~~ll~~m~~l~~ 247 (287)
...|.-..|..||+.....++.||.. -.|..+|+-=.+.|++..+.+|-+.+.+-|.
T Consensus 446 ~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~ 503 (656)
T KOG1914|consen 446 SHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFP 503 (656)
T ss_pred HHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcc
Confidence 88999999999999999998777631 4689999888889999999988776666555
No 115
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=92.72 E-value=1.1 Score=41.35 Aligned_cols=109 Identities=13% Similarity=0.112 Sum_probs=67.1
Q ss_pred HHHHHHHHHHc-CCHHHHHHHHHHhhh----CCCCCCChhhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCC-----CChH
Q 047178 147 CGQLIRALDMD-HRAEEAHKFWEKRIG----IDLHSVPWQLCKSMIAIYYRNNMLERLIKLFKGLEAFDRK-----PPEK 216 (287)
Q Consensus 147 YnaLI~~y~K~-G~leeA~~lF~eM~~----~g~~sv~~~tyNsmIsgY~k~G~~eeA~~Lf~eM~~~Gi~-----PD~~ 216 (287)
+.-+=..|-.. |+.++|.+.|.+-.+ .+....-...+.-+...|.+.|++++|.++|++....-.. ++..
T Consensus 117 ~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~ 196 (282)
T PF14938_consen 117 LKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAK 196 (282)
T ss_dssp HHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHH
Confidence 34444455556 788888888877542 2210000135777888999999999999999998764332 2211
Q ss_pred -HHHHHHHHHHHhcCCHHHHHHHHHHHhHHHhhhhcccccc
Q 047178 217 -SIVQRVADAYEVLGLLEEKERVLEKYKDLFTEKEKRSNKK 256 (287)
Q Consensus 217 -~Ty~sLI~a~~k~G~leeA~~ll~~m~~l~~~~~~~~~~~ 256 (287)
..++.+| .+-..|+...|.+.++++......|...+..+
T Consensus 197 ~~~l~a~l-~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~ 236 (282)
T PF14938_consen 197 EYFLKAIL-CHLAMGDYVAARKALERYCSQDPSFASSREYK 236 (282)
T ss_dssp HHHHHHHH-HHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHH
T ss_pred HHHHHHHH-HHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHH
Confidence 2234444 56667899999999999888777776544433
No 116
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=92.67 E-value=2.6 Score=41.59 Aligned_cols=90 Identities=8% Similarity=-0.019 Sum_probs=68.6
Q ss_pred HHHHHHHccchhhHHHHHHHHHHCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCCh-hhHHHHHHHHHHc
Q 047178 115 ALLALEKEQQWHRVVQVIKWMLSKGQGSTMGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPW-QLCKSMIAIYYRN 193 (287)
Q Consensus 115 ai~~L~k~~~~~~A~qv~~~M~~~G~~pd~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~-~tyNsmIsgY~k~ 193 (287)
+...+...++-.+|++++...+.. ..-|......-...|.+.++.+.|..+..++.... |+. .+|..|..+|.+.
T Consensus 206 LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~ls---P~~f~~W~~La~~Yi~~ 281 (395)
T PF09295_consen 206 LARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQAEFLLSKKKYELALEIAKKAVELS---PSEFETWYQLAECYIQL 281 (395)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC---chhHHHHHHHHHHHHhc
Confidence 344444456677888888887753 22355555666777889999999999999998752 333 4899999999999
Q ss_pred CCHhHHHHHHHHHHH
Q 047178 194 NMLERLIKLFKGLEA 208 (287)
Q Consensus 194 G~~eeA~~Lf~eM~~ 208 (287)
|++++|+-.+..|..
T Consensus 282 ~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 282 GDFENALLALNSCPM 296 (395)
T ss_pred CCHHHHHHHHhcCcC
Confidence 999999999988753
No 117
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=92.49 E-value=0.34 Score=35.38 Aligned_cols=62 Identities=23% Similarity=0.338 Sum_probs=46.4
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHhhhC--CCC-CCC--hhhHHHHHHHHHHcCCHhHHHHHHHHH
Q 047178 145 GTCGQLIRALDMDHRAEEAHKFWEKRIGI--DLH-SVP--WQLCKSMIAIYYRNNMLERLIKLFKGL 206 (287)
Q Consensus 145 ~TYnaLI~~y~K~G~leeA~~lF~eM~~~--g~~-sv~--~~tyNsmIsgY~k~G~~eeA~~Lf~eM 206 (287)
.+|+.|=..|...|+.++|...|++.... ... ..+ ..+|+.|=..|...|++++|++.|++-
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 46788888899999999999999987532 010 011 246888899999999999999999864
No 118
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=92.42 E-value=2.3 Score=44.58 Aligned_cols=117 Identities=15% Similarity=0.144 Sum_probs=76.1
Q ss_pred HHccchhhHHHHHHHHHHCCCCCC-hhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHcCCHhH
Q 047178 120 EKEQQWHRVVQVIKWMLSKGQGST-MGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNNMLER 198 (287)
Q Consensus 120 ~k~~~~~~A~qv~~~M~~~G~~pd-~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~G~~ee 198 (287)
...|..+-|+..++.-++. .|+ ...||-|-+++-..|++.||+..+.+-..-.-. -+ -.-|-|=+.|..-|++++
T Consensus 297 yeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~-ha-dam~NLgni~~E~~~~e~ 372 (966)
T KOG4626|consen 297 YEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPN-HA-DAMNNLGNIYREQGKIEE 372 (966)
T ss_pred eccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCc-cH-HHHHHHHHHHHHhccchH
Confidence 3456666666666665542 333 346888888888888888888888776543210 01 124447778888888888
Q ss_pred HHHHHHHHHHCCCCCChHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 047178 199 LIKLFKGLEAFDRKPPEKSIVQRVADAYEVLGLLEEKERVLEKY 242 (287)
Q Consensus 199 A~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~G~leeA~~ll~~m 242 (287)
|..||..-.+ +.|+-...+|-|-..|-..|++++|..-+.+.
T Consensus 373 A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykea 414 (966)
T KOG4626|consen 373 ATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEA 414 (966)
T ss_pred HHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHH
Confidence 8888876443 45554455677777788888888887766543
No 119
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=92.34 E-value=3 Score=39.53 Aligned_cols=130 Identities=16% Similarity=0.126 Sum_probs=85.4
Q ss_pred cchhhHHHHHHHHHHCCC---CCChhHHHHHHHHHHH--cCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHcCC--
Q 047178 123 QQWHRVVQVIKWMLSKGQ---GSTMGTCGQLIRALDM--DHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNNM-- 195 (287)
Q Consensus 123 ~~~~~A~qv~~~M~~~G~---~pd~~TYnaLI~~y~K--~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~G~-- 195 (287)
....+|..+++.|.+.-. .++-+++.+|+.+=.. .-.++.++..|+.+...|+..-+..-+-+-|-+++..-.
T Consensus 117 ~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~ 196 (297)
T PF13170_consen 117 EIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAMTSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQE 196 (297)
T ss_pred HHHHHHHHHHHHHHHhCccccCccchhHHHHHhcccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchH
Confidence 456778999999987643 3566788888776221 113467788888888877754333333444444443322
Q ss_pred -HhHHHHHHHHHHHCCCCCChHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHHhhhhcccccc
Q 047178 196 -LERLIKLFKGLEAFDRKPPEKSIVQRVADAYEVLGLLEEKERVLEKYKDLFTEKEKRSNKK 256 (287)
Q Consensus 196 -~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~G~leeA~~ll~~m~~l~~~~~~~~~~~ 256 (287)
..++.++++.+.+.|+++-. ..|. +|..++-.+.-+ .++.+.+.++.+.+|+.+.++
T Consensus 197 ~v~r~~~l~~~l~~~~~kik~-~~yp-~lGlLall~~~~--~~~~~~i~ev~~~L~~~k~~~ 254 (297)
T PF13170_consen 197 KVARVIELYNALKKNGVKIKY-MHYP-TLGLLALLEDPE--EKIVEEIKEVIDELKEQKGFG 254 (297)
T ss_pred HHHHHHHHHHHHHHcCCcccc-cccc-HHHHHHhcCCch--HHHHHHHHHHHHHHhhCcccC
Confidence 45789999999999999874 4444 444555555432 256677888888899888766
No 120
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=92.26 E-value=5.2 Score=32.50 Aligned_cols=114 Identities=11% Similarity=0.088 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHHccchhhHHHHHHHHHHCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHH
Q 047178 110 GSLKKALLALEKEQQWHRVVQVIKWMLSKGQGSTMGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAI 189 (287)
Q Consensus 110 ~s~~~ai~~L~k~~~~~~A~qv~~~M~~~G~~pd~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsg 189 (287)
.....++..|.+.+.......+++++...|. .+...+|.||..|++... ++..+.|.. ... .+....++..
T Consensus 8 ~~~~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~~-~~ll~~l~~--~~~-----~yd~~~~~~~ 78 (140)
T smart00299 8 IDVSEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYDP-QKEIERLDN--KSN-----HYDIEKVGKL 78 (140)
T ss_pred CCHHHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHCH-HHHHHHHHh--ccc-----cCCHHHHHHH
Confidence 3456778888888888899999999888874 677789999999998754 444455552 111 1123457777
Q ss_pred HHHcCCHhHHHHHHHHHHHCCCCCChHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 047178 190 YYRNNMLERLIKLFKGLEAFDRKPPEKSIVQRVADAYEVLGLLEEKERVLEK 241 (287)
Q Consensus 190 Y~k~G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~G~leeA~~ll~~ 241 (287)
+.+.+.+++|.-++..|.. ..+ + ...+|. ..++++.|.+.+.+
T Consensus 79 c~~~~l~~~~~~l~~k~~~---~~~-A--l~~~l~---~~~d~~~a~~~~~~ 121 (140)
T smart00299 79 CEKAKLYEEAVELYKKDGN---FKD-A--IVTLIE---HLGNYEKAIEYFVK 121 (140)
T ss_pred HHHcCcHHHHHHHHHhhcC---HHH-H--HHHHHH---cccCHHHHHHHHHh
Confidence 7777888888888776532 112 1 122222 22667777776654
No 121
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=92.25 E-value=0.97 Score=31.97 Aligned_cols=59 Identities=24% Similarity=0.271 Sum_probs=30.1
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChHHHHHHHHHHHHhcC-CHHHHHHHHHHHh
Q 047178 183 CKSMIAIYYRNNMLERLIKLFKGLEAFDRKPPEKSIVQRVADAYEVLG-LLEEKERVLEKYK 243 (287)
Q Consensus 183 yNsmIsgY~k~G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~G-~leeA~~ll~~m~ 243 (287)
|..+=..|.+.|++++|+..|.+-.+. -|+....|..+-.+|...| +.++|.+.+++..
T Consensus 6 ~~~~g~~~~~~~~~~~A~~~~~~ai~~--~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al 65 (69)
T PF13414_consen 6 WYNLGQIYFQQGDYEEAIEYFEKAIEL--DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKAL 65 (69)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHH--STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 444444555555555555555555543 2444444455555555555 4555555554433
No 122
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=92.18 E-value=2.2 Score=35.12 Aligned_cols=103 Identities=14% Similarity=0.041 Sum_probs=60.7
Q ss_pred HHHccchhhHHHHHHHHHHCCCCCCh--hHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCCh--hhHHHHHHHHHHcC
Q 047178 119 LEKEQQWHRVVQVIKWMLSKGQGSTM--GTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPW--QLCKSMIAIYYRNN 194 (287)
Q Consensus 119 L~k~~~~~~A~qv~~~M~~~G~~pd~--~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~--~tyNsmIsgY~k~G 194 (287)
+...|+.++|+.++..-...|...+. ..+-.|=..|..-|+.++|..+|++.....- ..++ ...-.+--++...|
T Consensus 11 ~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p-~~~~~~~l~~f~Al~L~~~g 89 (120)
T PF12688_consen 11 HDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFP-DDELNAALRVFLALALYNLG 89 (120)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CccccHHHHHHHHHHHHHCC
Confidence 44567778888888887777765442 2344455667788888888888887765311 0011 11111223567778
Q ss_pred CHhHHHHHHHHHHHCCCCCChHHHHHHHHHHHH
Q 047178 195 MLERLIKLFKGLEAFDRKPPEKSIVQRVADAYE 227 (287)
Q Consensus 195 ~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~ 227 (287)
+.++|++++-.-.. ++ ..-|.--|..|+
T Consensus 90 r~~eAl~~~l~~la----~~-~~~y~ra~~~ya 117 (120)
T PF12688_consen 90 RPKEALEWLLEALA----ET-LPRYRRAIRFYA 117 (120)
T ss_pred CHHHHHHHHHHHHH----HH-HHHHHHHHHHHH
Confidence 88888887765443 22 233555554443
No 123
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=92.11 E-value=3.8 Score=38.09 Aligned_cols=101 Identities=7% Similarity=-0.014 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHHccchhhHHHHHHHHHHCCCCCCh----hHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCC--CChhhH
Q 047178 110 GSLKKALLALEKEQQWHRVVQVIKWMLSKGQGSTM----GTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHS--VPWQLC 183 (287)
Q Consensus 110 ~s~~~ai~~L~k~~~~~~A~qv~~~M~~~G~~pd~----~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~s--v~~~ty 183 (287)
..+..++..+.+.+++++|+..|+.+++.- |+. .++--|-..|...|+.++|...|..+....-.+ .+. .+
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~d-Al 220 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAAD-AM 220 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhH-HH
Confidence 456667776677799999999999988752 432 355667788899999999999999998643211 111 23
Q ss_pred HHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCh
Q 047178 184 KSMIAIYYRNNMLERLIKLFKGLEAFDRKPPE 215 (287)
Q Consensus 184 NsmIsgY~k~G~~eeA~~Lf~eM~~~Gi~PD~ 215 (287)
=-+...|...|+.++|...|+..... .|+.
T Consensus 221 ~klg~~~~~~g~~~~A~~~~~~vi~~--yP~s 250 (263)
T PRK10803 221 FKVGVIMQDKGDTAKAKAVYQQVIKK--YPGT 250 (263)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH--CcCC
Confidence 33566778999999999999988765 3653
No 124
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.84 E-value=1.5 Score=42.42 Aligned_cols=104 Identities=10% Similarity=0.030 Sum_probs=76.2
Q ss_pred HCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCC-CCCChhhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCh
Q 047178 137 SKGQGSTMGTCGQLIRALDMDHRAEEAHKFWEKRIGIDL-HSVPWQLCKSMIAIYYRNNMLERLIKLFKGLEAFDRKPPE 215 (287)
Q Consensus 137 ~~G~~pd~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~-~sv~~~tyNsmIsgY~k~G~~eeA~~Lf~eM~~~Gi~PD~ 215 (287)
..|......|-..+|+.-....++++|+..+.++...-- --++..+--++|. +|-.=++++++-++..=...|+.||.
T Consensus 57 ~~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~ir-lllky~pq~~i~~l~npIqYGiF~dq 135 (418)
T KOG4570|consen 57 ERGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIR-LLLKYDPQKAIYTLVNPIQYGIFPDQ 135 (418)
T ss_pred hcCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHH-HHHccChHHHHHHHhCcchhccccch
Confidence 456666777788888888888899999999998864210 0011111112222 33344788999999999999999995
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 047178 216 KSIVQRVADAYEVLGLLEEKERVLEKY 242 (287)
Q Consensus 216 ~~Ty~sLI~a~~k~G~leeA~~ll~~m 242 (287)
+|++.||+.+-+.++..+|.++.-.|
T Consensus 136 -f~~c~l~D~flk~~n~~~aa~vvt~~ 161 (418)
T KOG4570|consen 136 -FTFCLLMDSFLKKENYKDAASVVTEV 161 (418)
T ss_pred -hhHHHHHHHHHhcccHHHHHHHHHHH
Confidence 99999999999999999998876543
No 125
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=91.58 E-value=3.9 Score=33.57 Aligned_cols=87 Identities=17% Similarity=0.088 Sum_probs=61.4
Q ss_pred HHHHHcCCHHHHHHHHHHhhhCCCCCCC-hhhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCC---hHHHHHHHHHHHH
Q 047178 152 RALDMDHRAEEAHKFWEKRIGIDLHSVP-WQLCKSMIAIYYRNNMLERLIKLFKGLEAFDRKPP---EKSIVQRVADAYE 227 (287)
Q Consensus 152 ~~y~K~G~leeA~~lF~eM~~~g~~sv~-~~tyNsmIsgY~k~G~~eeA~~Lf~eM~~~Gi~PD---~~~Ty~sLI~a~~ 227 (287)
.++-..|+.++|..+|++-...|+.... ...+=.+=+.|...|++++|+.+|++....- || .......+--++.
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--PDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHHH
Confidence 3566789999999999999888763211 1234446678999999999999999887642 44 1111122334677
Q ss_pred hcCCHHHHHHHHH
Q 047178 228 VLGLLEEKERVLE 240 (287)
Q Consensus 228 k~G~leeA~~ll~ 240 (287)
..|+.++|...+-
T Consensus 87 ~~gr~~eAl~~~l 99 (120)
T PF12688_consen 87 NLGRPKEALEWLL 99 (120)
T ss_pred HCCCHHHHHHHHH
Confidence 8999999998764
No 126
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=91.25 E-value=9.7 Score=35.28 Aligned_cols=128 Identities=15% Similarity=0.071 Sum_probs=68.7
Q ss_pred HHHHHHHccchhhHHHHHHHHHHCCCCCChh-HHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHc
Q 047178 115 ALLALEKEQQWHRVVQVIKWMLSKGQGSTMG-TCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRN 193 (287)
Q Consensus 115 ai~~L~k~~~~~~A~qv~~~M~~~G~~pd~~-TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~ 193 (287)
.-..+.+.|+.+.|.+-+..-++. .|+-. +-|--=..||..|+.++|...|++-...-.-.-+..+|.-+--+..+.
T Consensus 75 ~A~~Yq~~Ge~~~A~e~YrkAlsl--~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~ 152 (250)
T COG3063 75 RAHYYQKLGENDLADESYRKALSL--APNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKA 152 (250)
T ss_pred HHHHHHHcCChhhHHHHHHHHHhc--CCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhc
Confidence 333456666666666666655442 23211 112122235667777777777776543211111223455555555567
Q ss_pred CCHhHHHHHHHHHHHCCCCCChHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHH
Q 047178 194 NMLERLIKLFKGLEAFDRKPPEKSIVQRVADAYEVLGLLEEKERVLEKYKDLF 246 (287)
Q Consensus 194 G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~G~leeA~~ll~~m~~l~ 246 (287)
|+++.|.+.|++-.+..-.-+ .+.-.+-.-..+.|+.-.|...++.+..-.
T Consensus 153 gq~~~A~~~l~raL~~dp~~~--~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~ 203 (250)
T COG3063 153 GQFDQAEEYLKRALELDPQFP--PALLELARLHYKAGDYAPARLYLERYQQRG 203 (250)
T ss_pred CCchhHHHHHHHHHHhCcCCC--hHHHHHHHHHHhcccchHHHHHHHHHHhcc
Confidence 777777777776655443222 234555566666677777777666665543
No 127
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=91.18 E-value=2.5 Score=43.87 Aligned_cols=101 Identities=17% Similarity=0.106 Sum_probs=68.1
Q ss_pred CChhHHHHH---HHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChHHH
Q 047178 142 STMGTCGQL---IRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNNMLERLIKLFKGLEAFDRKPPEKSI 218 (287)
Q Consensus 142 pd~~TYnaL---I~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~G~~eeA~~Lf~eM~~~Gi~PD~~~T 218 (287)
.|..-||+. =-.|.|.++.|.|+-.|.+-.+-+ +...+.-..+-..|-+.|+.|+|+.+|++-....-+ |...-
T Consensus 484 ~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN--P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~ 560 (638)
T KOG1126|consen 484 VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN--PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCK 560 (638)
T ss_pred CCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCC--ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhH
Confidence 455556664 334779999999999999887654 222233333445677899999999999986654432 11122
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhHHH
Q 047178 219 VQRVADAYEVLGLLEEKERVLEKYKDLF 246 (287)
Q Consensus 219 y~sLI~a~~k~G~leeA~~ll~~m~~l~ 246 (287)
|.. ...+..+++.++|+++|++.+.+.
T Consensus 561 ~~~-~~il~~~~~~~eal~~LEeLk~~v 587 (638)
T KOG1126|consen 561 YHR-ASILFSLGRYVEALQELEELKELV 587 (638)
T ss_pred HHH-HHHHHhhcchHHHHHHHHHHHHhC
Confidence 322 335677899999999999988765
No 128
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=91.16 E-value=13 Score=34.55 Aligned_cols=116 Identities=9% Similarity=0.031 Sum_probs=72.3
Q ss_pred HHHccchhhHHHHHHHHHHCCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHcCCHh
Q 047178 119 LEKEQQWHRVVQVIKWMLSKGQGS-TMGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNNMLE 197 (287)
Q Consensus 119 L~k~~~~~~A~qv~~~M~~~G~~p-d~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~G~~e 197 (287)
+-..|+...|..-++.-++ +.| +..+|.++-..|-+.|..+.|.+-|++-....-..-+ | -|--=.-+|..|+++
T Consensus 45 YL~~gd~~~A~~nlekAL~--~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~Gd-V-LNNYG~FLC~qg~~~ 120 (250)
T COG3063 45 YLQQGDYAQAKKNLEKALE--HDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGD-V-LNNYGAFLCAQGRPE 120 (250)
T ss_pred HHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccc-h-hhhhhHHHHhCCChH
Confidence 4556777777776666655 234 3456778888888888888888888876543211001 1 122222458888888
Q ss_pred HHHHHHHHHHHC---CCCCChHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 047178 198 RLIKLFKGLEAF---DRKPPEKSIVQRVADAYEVLGLLEEKERVLEK 241 (287)
Q Consensus 198 eA~~Lf~eM~~~---Gi~PD~~~Ty~sLI~a~~k~G~leeA~~ll~~ 241 (287)
+|...|++-... |-.+| ||.-+.-+..+.|+++.|+..|..
T Consensus 121 eA~q~F~~Al~~P~Y~~~s~---t~eN~G~Cal~~gq~~~A~~~l~r 164 (250)
T COG3063 121 EAMQQFERALADPAYGEPSD---TLENLGLCALKAGQFDQAEEYLKR 164 (250)
T ss_pred HHHHHHHHHHhCCCCCCcch---hhhhhHHHHhhcCCchhHHHHHHH
Confidence 888888877654 44444 233333355567888888887764
No 129
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=91.14 E-value=4.4 Score=38.78 Aligned_cols=113 Identities=17% Similarity=0.063 Sum_probs=79.4
Q ss_pred CCCHHHHHHHHHHHHHccchhhHHHHHHHHHHCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHH
Q 047178 106 NFPVGSLKKALLALEKEQQWHRVVQVIKWMLSKGQGSTMGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKS 185 (287)
Q Consensus 106 ~~~~~s~~~ai~~L~k~~~~~~A~qv~~~M~~~G~~pd~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNs 185 (287)
.|.-.++...+..|-..|+...|.++.+.. . .||---|-.-|.+|++.|++++-+.+... .+ + | +-|-.
T Consensus 174 ~f~~~Sl~~Ti~~li~~~~~k~A~kl~k~F---k-v~dkrfw~lki~aLa~~~~w~eL~~fa~s--kK---s-P-IGyep 242 (319)
T PF04840_consen 174 NFVGLSLNDTIRKLIEMGQEKQAEKLKKEF---K-VPDKRFWWLKIKALAENKDWDELEKFAKS--KK---S-P-IGYEP 242 (319)
T ss_pred chhcCCHHHHHHHHHHCCCHHHHHHHHHHc---C-CcHHHHHHHHHHHHHhcCCHHHHHHHHhC--CC---C-C-CChHH
Confidence 343456777777777788877776665443 2 37777788889999999999887776443 11 1 2 34888
Q ss_pred HHHHHHHcCCHhHHHHHHHHHHHCCCCCChHHHHHHHHHHHHhcCCHHHHHHHHH
Q 047178 186 MIAIYYRNNMLERLIKLFKGLEAFDRKPPEKSIVQRVADAYEVLGLLEEKERVLE 240 (287)
Q Consensus 186 mIsgY~k~G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~G~leeA~~ll~ 240 (287)
.|..+.+.|...+|...... +. | ..-+..|.+.|++.+|-++--
T Consensus 243 Fv~~~~~~~~~~eA~~yI~k-----~~-~-----~~rv~~y~~~~~~~~A~~~A~ 286 (319)
T PF04840_consen 243 FVEACLKYGNKKEASKYIPK-----IP-D-----EERVEMYLKCGDYKEAAQEAF 286 (319)
T ss_pred HHHHHHHCCCHHHHHHHHHh-----CC-h-----HHHHHHHHHCCCHHHHHHHHH
Confidence 88888889999888888765 22 2 344667888888888876643
No 130
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=91.12 E-value=4.7 Score=39.38 Aligned_cols=127 Identities=11% Similarity=0.085 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHHccchhhHHHHHHHHHHCCCCCChhHHHH-HHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHH
Q 047178 110 GSLKKALLALEKEQQWHRVVQVIKWMLSKGQGSTMGTCGQ-LIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIA 188 (287)
Q Consensus 110 ~s~~~ai~~L~k~~~~~~A~qv~~~M~~~G~~pd~~TYna-LI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIs 188 (287)
-++.-+-+.+.+..+-..|+.++.+-++. .|--+||-. +-.-+-..+..++|.+++....+.. +..+-.-.++-.
T Consensus 257 dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~--~~nvEaiAcia~ 332 (478)
T KOG1129|consen 257 DTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLH--PINVEAIACIAV 332 (478)
T ss_pred hHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcC--Cccceeeeeeee
Confidence 34555566677777888888887775543 344455532 3344555677888888888766532 112223344556
Q ss_pred HHHHcCCHhHHHHHHHHHHHCCCCCChHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 047178 189 IYYRNNMLERLIKLFKGLEAFDRKPPEKSIVQRVADAYEVLGLLEEKERVLEKY 242 (287)
Q Consensus 189 gY~k~G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~G~leeA~~ll~~m 242 (287)
+|.-.|++|-|+..++++.+.|+.-.+ .|+-+--+|.-.+.+|-++--|...
T Consensus 333 ~yfY~~~PE~AlryYRRiLqmG~~spe--Lf~NigLCC~yaqQ~D~~L~sf~RA 384 (478)
T KOG1129|consen 333 GYFYDNNPEMALRYYRRILQMGAQSPE--LFCNIGLCCLYAQQIDLVLPSFQRA 384 (478)
T ss_pred ccccCCChHHHHHHHHHHHHhcCCChH--HHhhHHHHHHhhcchhhhHHHHHHH
Confidence 788889999999999999999987543 3555554666677777777666543
No 131
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=90.96 E-value=1.9 Score=35.35 Aligned_cols=63 Identities=19% Similarity=0.235 Sum_probs=51.8
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHHh
Q 047178 183 CKSMIAIYYRNNMLERLIKLFKGLEAFDRKPPEKSIVQRVADAYEVLGLLEEKERVLEKYKDLFT 247 (287)
Q Consensus 183 yNsmIsgY~k~G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~G~leeA~~ll~~m~~l~~ 247 (287)
...++..+...|++++|..+...+....-. |+ ..|..+|.+|...|+..+|.++++++...+.
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~-~E-~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~ 127 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALDPY-DE-EAYRLLMRALAAQGRRAEALRVYERYRRRLR 127 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHSTT--H-HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcCCC-CH-HHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 566788888999999999999999876532 54 7799999999999999999999999877665
No 132
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.96 E-value=0.83 Score=44.11 Aligned_cols=93 Identities=12% Similarity=0.071 Sum_probs=66.9
Q ss_pred CCCCcccHHHHHHHHHccCCCcchHHHHHHHHHHccCCCCHHHHHHHHHHHHHccchhhHHHHHHHHHHCCCCCChhHHH
Q 047178 69 NVPRKDKINFLVNTLLDLKNSKEDVYGTLDAWVAWEQNFPVGSLKKALLALEKEQQWHRVVQVIKWMLSKGQGSTMGTCG 148 (287)
Q Consensus 69 ~~s~~~~~~~Li~~l~~lg~~~~~v~~~Ld~~~~~~~~~~~~s~~~ai~~L~k~~~~~~A~qv~~~M~~~G~~pd~~TYn 148 (287)
++|..+.+.+++..+.++.+...+-|- .. .+..++ ++.|-+. +-.+++.+...=+.-|+-||-+|++
T Consensus 73 v~~~~~~idd~~~~LyKlRhs~~a~~~--~~-------~~~~~~---irlllky-~pq~~i~~l~npIqYGiF~dqf~~c 139 (418)
T KOG4570|consen 73 VISSREEIDDAEYYLYKLRHSPNAWYL--RN-------WTIHTW---IRLLLKY-DPQKAIYTLVNPIQYGIFPDQFTFC 139 (418)
T ss_pred ccccccchhHHHHHHHHHhcCcchhhh--cc-------ccHHHH---HHHHHcc-ChHHHHHHHhCcchhccccchhhHH
Confidence 567777788899999999887755332 11 123333 3333332 3447777776667889999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhhhCC
Q 047178 149 QLIRALDMDHRAEEAHKFWEKRIGID 174 (287)
Q Consensus 149 aLI~~y~K~G~leeA~~lF~eM~~~g 174 (287)
.||+.|-|.+++.+|..+.-.|....
T Consensus 140 ~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 140 LLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 99999999999999998877776543
No 133
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=90.88 E-value=1.1 Score=31.93 Aligned_cols=51 Identities=20% Similarity=0.261 Sum_probs=23.1
Q ss_pred HHHcCCHhHHHHHHHHHHHCCCCCChHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 047178 190 YYRNNMLERLIKLFKGLEAFDRKPPEKSIVQRVADAYEVLGLLEEKERVLEKY 242 (287)
Q Consensus 190 Y~k~G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~G~leeA~~ll~~m 242 (287)
|.+.+++++|++.++.+... .|+....+.-.-..|...|++++|.+.++.+
T Consensus 5 ~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~ 55 (73)
T PF13371_consen 5 YLQQEDYEEALEVLERALEL--DPDDPELWLQRARCLFQLGRYEEALEDLERA 55 (73)
T ss_pred HHhCCCHHHHHHHHHHHHHh--CcccchhhHHHHHHHHHhccHHHHHHHHHHH
Confidence 44445555555555554443 2332333333444444455555555544443
No 134
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.67 E-value=3.8 Score=42.41 Aligned_cols=90 Identities=13% Similarity=0.164 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHccchhhHHHHHHHHHHCCCCCChhHHHHH--HHHHH--HcCCHHHHHHHHHHhhhCCCCCCChhhHHHH
Q 047178 111 SLKKALLALEKEQQWHRVVQVIKWMLSKGQGSTMGTCGQL--IRALD--MDHRAEEAHKFWEKRIGIDLHSVPWQLCKSM 186 (287)
Q Consensus 111 s~~~ai~~L~k~~~~~~A~qv~~~M~~~G~~pd~~TYnaL--I~~y~--K~G~leeA~~lF~eM~~~g~~sv~~~tyNsm 186 (287)
.+..-+..|-+.+++++|+.+.+.- +-..++|.. =.+|| +.++.|+|......... .+..+--.=
T Consensus 48 a~~cKvValIq~~ky~~ALk~ikk~------~~~~~~~~~~fEKAYc~Yrlnk~Dealk~~~~~~~-----~~~~ll~L~ 116 (652)
T KOG2376|consen 48 AIRCKVVALIQLDKYEDALKLIKKN------GALLVINSFFFEKAYCEYRLNKLDEALKTLKGLDR-----LDDKLLELR 116 (652)
T ss_pred hHhhhHhhhhhhhHHHHHHHHHHhc------chhhhcchhhHHHHHHHHHcccHHHHHHHHhcccc-----cchHHHHHH
Confidence 3444455567778888887655431 111334444 66776 67889999888773221 222111111
Q ss_pred HHHHHHcCCHhHHHHHHHHHHHCCC
Q 047178 187 IAIYYRNNMLERLIKLFKGLEAFDR 211 (287)
Q Consensus 187 IsgY~k~G~~eeA~~Lf~eM~~~Gi 211 (287)
=-.+.+.|++++|+.+++.+..++.
T Consensus 117 AQvlYrl~~ydealdiY~~L~kn~~ 141 (652)
T KOG2376|consen 117 AQVLYRLERYDEALDIYQHLAKNNS 141 (652)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 2346788999999999999988776
No 135
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=90.61 E-value=18 Score=35.74 Aligned_cols=123 Identities=19% Similarity=0.103 Sum_probs=86.2
Q ss_pred HHHHHHHHccchhhHHHHHHHHHHCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHc
Q 047178 114 KALLALEKEQQWHRVVQVIKWMLSKGQGSTMGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRN 193 (287)
Q Consensus 114 ~ai~~L~k~~~~~~A~qv~~~M~~~G~~pd~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~ 193 (287)
.++..|-+.|..++|.++..+-.+++..|+..++ | ...+-++.+.=.+..++-..... .+.-.|.+|=.-|.++
T Consensus 268 ~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~---~-~~l~~~d~~~l~k~~e~~l~~h~--~~p~L~~tLG~L~~k~ 341 (400)
T COG3071 268 AYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRL---I-PRLRPGDPEPLIKAAEKWLKQHP--EDPLLLSTLGRLALKN 341 (400)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHhccChhHHHH---H-hhcCCCCchHHHHHHHHHHHhCC--CChhHHHHHHHHHHHh
Confidence 4555678888999999998888888877773222 1 12233333333333333322221 1224577788888999
Q ss_pred CCHhHHHHHHHHHHHCCCCCChHHHHHHHHHHHHhcCCHHHHHHHHHHHhHH
Q 047178 194 NMLERLIKLFKGLEAFDRKPPEKSIVQRVADAYEVLGLLEEKERVLEKYKDL 245 (287)
Q Consensus 194 G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~G~leeA~~ll~~m~~l 245 (287)
+.+.+|-+.|+ ......|+ ..+|+.+-++|.+.|..++|.++.++-..+
T Consensus 342 ~~w~kA~~~le--aAl~~~~s-~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 342 KLWGKASEALE--AALKLRPS-ASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred hHHHHHHHHHH--HHHhcCCC-hhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 99999999999 45566788 599999999999999999999999876533
No 136
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=90.52 E-value=2.6 Score=39.78 Aligned_cols=77 Identities=17% Similarity=0.195 Sum_probs=63.2
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHcCCHhHHHHHHHHHH-----HCCCCCChHHHH
Q 047178 145 GTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNNMLERLIKLFKGLE-----AFDRKPPEKSIV 219 (287)
Q Consensus 145 ~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~G~~eeA~~Lf~eM~-----~~Gi~PD~~~Ty 219 (287)
.++..++..+..+|+.+.+.+.+++....+. -+.-.|-.||.+|.+.|+...|+..|+.|. +.|+.|-. .+-
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp--~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~-~~~ 230 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDP--YDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAP-ELR 230 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCc--cchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccH-HHH
Confidence 4678899999999999999999999988763 345679999999999999999999999875 47899874 544
Q ss_pred HHHHH
Q 047178 220 QRVAD 224 (287)
Q Consensus 220 ~sLI~ 224 (287)
.....
T Consensus 231 ~~y~~ 235 (280)
T COG3629 231 ALYEE 235 (280)
T ss_pred HHHHH
Confidence 43333
No 137
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=90.49 E-value=1.5 Score=31.04 Aligned_cols=62 Identities=19% Similarity=0.102 Sum_probs=46.0
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHcC-CHhHHHHHHHHHH
Q 047178 144 MGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNN-MLERLIKLFKGLE 207 (287)
Q Consensus 144 ~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~G-~~eeA~~Lf~eM~ 207 (287)
..+|..+=..|...|++++|...|.+..+.+- .....|..|=.+|.+.| ++++|++.|+.-.
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p--~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al 65 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDP--NNAEAYYNLGLAYMKLGKDYEEAIEDFEKAL 65 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHST--THHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 45666677778888999999999998877542 22345777777888888 6889988887654
No 138
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=90.22 E-value=6.8 Score=39.75 Aligned_cols=117 Identities=15% Similarity=0.166 Sum_probs=51.9
Q ss_pred cchhhHHHHHHHHHHCC-CCCChhHHHHHHHHHHHcCCHHHHHHHHHH-hhhCCCCCCChhhHHHHHHHHHHcCCHhHHH
Q 047178 123 QQWHRVVQVIKWMLSKG-QGSTMGTCGQLIRALDMDHRAEEAHKFWEK-RIGIDLHSVPWQLCKSMIAIYYRNNMLERLI 200 (287)
Q Consensus 123 ~~~~~A~qv~~~M~~~G-~~pd~~TYnaLI~~y~K~G~leeA~~lF~e-M~~~g~~sv~~~tyNsmIsgY~k~G~~eeA~ 200 (287)
.....|..+|-...+.| +.+++..|+++|.-+|. |+..-|..+|+- |...+- ++ ..-+--+.-+.+-|.-+.|.
T Consensus 411 ~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~f~d--~~-~y~~kyl~fLi~inde~nar 486 (660)
T COG5107 411 RGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLKFPD--ST-LYKEKYLLFLIRINDEENAR 486 (660)
T ss_pred hhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHhCCC--ch-HHHHHHHHHHHHhCcHHHHH
Confidence 33444455555555545 44555555555555543 233345555542 222110 11 11122333344455555555
Q ss_pred HHHH----HHHHCCCCCChHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHHh
Q 047178 201 KLFK----GLEAFDRKPPEKSIVQRVADAYEVLGLLEEKERVLEKYKDLFT 247 (287)
Q Consensus 201 ~Lf~----eM~~~Gi~PD~~~Ty~sLI~a~~k~G~leeA~~ll~~m~~l~~ 247 (287)
.||+ ++.....+ -.|-.+|+-=.+.|++..+..+-+.|-.+|.
T Consensus 487 aLFetsv~r~~~~q~k----~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~p 533 (660)
T COG5107 487 ALFETSVERLEKTQLK----RIYDKMIEYESMVGSLNNVYSLEERFRELVP 533 (660)
T ss_pred HHHHHhHHHHHHhhhh----HHHHHHHHHHHhhcchHHHHhHHHHHHHHcC
Confidence 5555 23222222 2355555555555555555555555444444
No 139
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.97 E-value=3.4 Score=40.73 Aligned_cols=123 Identities=15% Similarity=0.058 Sum_probs=83.8
Q ss_pred HHHHHHHHccchhhHHHHHHHHHHCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHH-HHHHH
Q 047178 114 KALLALEKEQQWHRVVQVIKWMLSKGQGSTMGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMI-AIYYR 192 (287)
Q Consensus 114 ~ai~~L~k~~~~~~A~qv~~~M~~~G~~pd~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmI-sgY~k 192 (287)
+.-..+.-..++++++-.+....+-=..-|.+.|| +-.++|-.|...+|+++|-......+ .+.++|-+|+ .+|.+
T Consensus 364 smAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~i--kn~~~Y~s~LArCyi~ 440 (557)
T KOG3785|consen 364 SMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEI--KNKILYKSMLARCYIR 440 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhh--hhhHHHHHHHHHHHHh
Confidence 33344455556676666666655544445555555 56788899999999999998866554 2446676665 57889
Q ss_pred cCCHhHHHHHHHHHHHCCCCCChHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 047178 193 NNMLERLIKLFKGLEAFDRKPPEKSIVQRVADAYEVLGLLEEKERVLEKY 242 (287)
Q Consensus 193 ~G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~G~leeA~~ll~~m 242 (287)
++.++-|.++|-.|...+ +..+....+.+-|.+.+.+--|-+.|++.
T Consensus 441 nkkP~lAW~~~lk~~t~~---e~fsLLqlIAn~CYk~~eFyyaaKAFd~l 487 (557)
T KOG3785|consen 441 NKKPQLAWDMMLKTNTPS---ERFSLLQLIANDCYKANEFYYAAKAFDEL 487 (557)
T ss_pred cCCchHHHHHHHhcCCch---hHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 999999999987776543 32233344456788999888887777653
No 140
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=89.95 E-value=3.2 Score=34.37 Aligned_cols=79 Identities=14% Similarity=0.078 Sum_probs=55.0
Q ss_pred HHHHHHHHHccchhhHHHHHHHHH---------------HCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCC
Q 047178 113 KKALLALEKEQQWHRVVQVIKWML---------------SKGQGSTMGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHS 177 (287)
Q Consensus 113 ~~ai~~L~k~~~~~~A~qv~~~M~---------------~~G~~pd~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~s 177 (287)
..++-++++.|+.+...++++..= ...+.||..+-.+++.+||.+|++..|.++.+.....--.+
T Consensus 6 ~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~ 85 (126)
T PF12921_consen 6 CNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIP 85 (126)
T ss_pred HHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCC
Confidence 345566666666665555543321 12245788899999999999999999999999987643234
Q ss_pred CChhhHHHHHHHHH
Q 047178 178 VPWQLCKSMIAIYY 191 (287)
Q Consensus 178 v~~~tyNsmIsgY~ 191 (287)
.|..+|..|+.-..
T Consensus 86 i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 86 IPKEFWRRLLEWAY 99 (126)
T ss_pred CCHHHHHHHHHHHH
Confidence 56678888876443
No 141
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=89.64 E-value=12 Score=40.77 Aligned_cols=130 Identities=15% Similarity=0.085 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHHccchhhHHHHHHHHHHCCCCCChhH---HHHHHHHHHHcCCHHHHHHHHHHhhhCCCCC---------
Q 047178 110 GSLKKALLALEKEQQWHRVVQVIKWMLSKGQGSTMGT---CGQLIRALDMDHRAEEAHKFWEKRIGIDLHS--------- 177 (287)
Q Consensus 110 ~s~~~ai~~L~k~~~~~~A~qv~~~M~~~G~~pd~~T---YnaLI~~y~K~G~leeA~~lF~eM~~~g~~s--------- 177 (287)
..+..++..+...+++++|.++.+.-.+ ..|+... |..+ -|-..++.++|..+ .+...-...
T Consensus 32 ~a~~~Li~~~~~~~~~deai~i~~~~l~--~~P~~i~~yy~~G~--l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~ 105 (906)
T PRK14720 32 KELDDLIDAYKSENLTDEAKDICEEHLK--EHKKSISALYISGI--LSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHI 105 (906)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH--hCCcceehHHHHHH--HHHhhcchhhhhhh--hhhhhcccccchhHHHHH
Confidence 4455677777788888888888775443 2344322 2222 45555666666555 332210000
Q ss_pred --------CChhhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHHhh
Q 047178 178 --------VPWQLCKSMIAIYYRNNMLERLIKLFKGLEAFDRKPPEKSIVQRVADAYEVLGLLEEKERVLEKYKDLFTE 248 (287)
Q Consensus 178 --------v~~~tyNsmIsgY~k~G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~G~leeA~~ll~~m~~l~~~ 248 (287)
-....+-++-.+|-+.|+.++|..+++++.+.. |+.+...|-+--.|+.. ++++|+++..+....|..
T Consensus 106 ~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D--~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i~ 181 (906)
T PRK14720 106 CDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD--RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFIK 181 (906)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHh
Confidence 011234456667778899999999999999987 76678888888899999 999999998876665543
No 142
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=88.61 E-value=7.6 Score=42.33 Aligned_cols=77 Identities=12% Similarity=0.160 Sum_probs=54.9
Q ss_pred HHHHHHHccchhhHHHHHHHHHHCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHcC
Q 047178 115 ALLALEKEQQWHRVVQVIKWMLSKGQGSTMGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNN 194 (287)
Q Consensus 115 ai~~L~k~~~~~~A~qv~~~M~~~G~~pd~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~G 194 (287)
+-.+|.+.|+.+++..+++.+++.. .-|..+-|-+=..|+.. ++++|++++.+-..+ |....
T Consensus 122 LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~----------------~i~~k 183 (906)
T PRK14720 122 LAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR----------------FIKKK 183 (906)
T ss_pred HHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH----------------HHhhh
Confidence 4445678888889999998888765 34667777788888888 899998887765432 44445
Q ss_pred CHhHHHHHHHHHHHC
Q 047178 195 MLERLIKLFKGLEAF 209 (287)
Q Consensus 195 ~~eeA~~Lf~eM~~~ 209 (287)
++.++.+++.++...
T Consensus 184 q~~~~~e~W~k~~~~ 198 (906)
T PRK14720 184 QYVGIEEIWSKLVHY 198 (906)
T ss_pred cchHHHHHHHHHHhc
Confidence 666666666666654
No 143
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=88.50 E-value=23 Score=33.59 Aligned_cols=123 Identities=13% Similarity=0.087 Sum_probs=78.6
Q ss_pred hhhHHHHHHHHHHCCCCCChhHHHH--HHHHHHH----cCCHHHHHHHHHHhhhCC--CCCCChhhHHHHHHHHHHcCC-
Q 047178 125 WHRVVQVIKWMLSKGQGSTMGTCGQ--LIRALDM----DHRAEEAHKFWEKRIGID--LHSVPWQLCKSMIAIYYRNNM- 195 (287)
Q Consensus 125 ~~~A~qv~~~M~~~G~~pd~~TYna--LI~~y~K----~G~leeA~~lF~eM~~~g--~~sv~~~tyNsmIsgY~k~G~- 195 (287)
+++.+.+++.|.+.|+..+..+|-+ +|...+. .-.+..|.++|+.|.+.. +.+..++.+.+|+.+ ....
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 6677899999999999998888766 3333321 235678999999998743 222335678888876 3333
Q ss_pred ---HhHHHHHHHHHHHCCCCCChHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHHhhhhccc
Q 047178 196 ---LERLIKLFKGLEAFDRKPPEKSIVQRVADAYEVLGLLEEKERVLEKYKDLFTEKEKRS 253 (287)
Q Consensus 196 ---~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~G~leeA~~ll~~m~~l~~~~~~~~ 253 (287)
.+++...|+.+...|+....-.-+.+-|-+++..-.-+. ..+...+++.+.+++
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~----v~r~~~l~~~l~~~~ 212 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEK----VARVIELYNALKKNG 212 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHH----HHHHHHHHHHHHHcC
Confidence 356677888888889887643333333334433332222 456666777777653
No 144
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=88.38 E-value=3.1 Score=33.54 Aligned_cols=49 Identities=12% Similarity=0.295 Sum_probs=34.1
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHHC--CCCCCh--HHHHHHHHHHHHhcCC
Q 047178 183 CKSMIAIYYRNNMLERLIKLFKGLEAF--DRKPPE--KSIVQRVADAYEVLGL 231 (287)
Q Consensus 183 yNsmIsgY~k~G~~eeA~~Lf~eM~~~--Gi~PD~--~~Ty~sLI~a~~k~G~ 231 (287)
|..|+.-|...|+.++|++++.++... +-..|. .-...++|+-+.++|.
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~~~~~~~~~~~~~~~~~~iv~yL~~L~~ 94 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLADEEDSDEEDPFLSGVKETIVQYLQKLGN 94 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhcccccccccccccCchhHHHHHHHhCCh
Confidence 999999999999999999999999872 111111 0112345667777764
No 145
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=88.29 E-value=34 Score=39.15 Aligned_cols=131 Identities=11% Similarity=0.023 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHHHccchhhHHHHHHHHHHCCCCC---ChhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHH
Q 047178 109 VGSLKKALLALEKEQQWHRVVQVIKWMLSKGQGS---TMGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKS 185 (287)
Q Consensus 109 ~~s~~~ai~~L~k~~~~~~A~qv~~~M~~~G~~p---d~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNs 185 (287)
...|......|-+..+-+.|..++.+-++. -| .+..-......-.|+|+.+.++.+|+......-...+ .|+.
T Consensus 1564 ~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtD--lW~V 1639 (1710)
T KOG1070|consen 1564 RKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTD--LWSV 1639 (1710)
T ss_pred hhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchh--HHHH
Confidence 344556666777777777777777765542 22 2333445556667999999999999998764321112 4999
Q ss_pred HHHHHHHcCCHhHHHHHHHHHHHCCCCCC-hHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 047178 186 MIAIYYRNNMLERLIKLFKGLEAFDRKPP-EKSIVQRVADAYEVLGLLEEKERVLEKYK 243 (287)
Q Consensus 186 mIsgY~k~G~~eeA~~Lf~eM~~~Gi~PD-~~~Ty~sLI~a~~k~G~leeA~~ll~~m~ 243 (287)
.|+.=.++|..+.+..||++....++.|- -.+.|..+|.-=-..|+-+.++.+-.+..
T Consensus 1640 Yid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~VKarA~ 1698 (1710)
T KOG1070|consen 1640 YIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEYVKARAK 1698 (1710)
T ss_pred HHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence 99999999999999999999999999874 23678999966666687777666655433
No 146
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=87.92 E-value=34 Score=34.90 Aligned_cols=101 Identities=23% Similarity=0.219 Sum_probs=78.8
Q ss_pred CChhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChHHHHHH
Q 047178 142 STMGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNNMLERLIKLFKGLEAFDRKPPEKSIVQR 221 (287)
Q Consensus 142 pd~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~s 221 (287)
.|-..|-.|=.+|.-.+...=|.-.|.+-... .|-+...|.+|=.+|.+.+++++|++-|..-...|=. + ...|..
T Consensus 396 ~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~--kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt-e-~~~l~~ 471 (559)
T KOG1155|consen 396 RDYRAWYGLGQAYEIMKMHFYALYYFQKALEL--KPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT-E-GSALVR 471 (559)
T ss_pred hhHHHHhhhhHHHHHhcchHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc-c-hHHHHH
Confidence 45566666777777778888888888876553 3345578999999999999999999999988776633 2 256888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhHHH
Q 047178 222 VADAYEVLGLLEEKERVLEKYKDLF 246 (287)
Q Consensus 222 LI~a~~k~G~leeA~~ll~~m~~l~ 246 (287)
|-+.|-+.++.++|.+.++++.+-+
T Consensus 472 LakLye~l~d~~eAa~~yek~v~~~ 496 (559)
T KOG1155|consen 472 LAKLYEELKDLNEAAQYYEKYVEVS 496 (559)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 9999999999999999998877755
No 147
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=87.29 E-value=36 Score=34.71 Aligned_cols=113 Identities=5% Similarity=-0.033 Sum_probs=73.7
Q ss_pred hhhHHHHHHHHHHCCCCCCh-hHHHHHHHHHHHc--------CCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHcCC
Q 047178 125 WHRVVQVIKWMLSKGQGSTM-GTCGQLIRALDMD--------HRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNNM 195 (287)
Q Consensus 125 ~~~A~qv~~~M~~~G~~pd~-~TYnaLI~~y~K~--------G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~G~ 195 (287)
..+|.++|++.++ ..||- ..|..|--+|... ..++.|.+...+.........+...|.++--.+...|+
T Consensus 358 ~~~A~~lle~Ai~--ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~ 435 (517)
T PRK10153 358 LNKASDLLEEILK--SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGK 435 (517)
T ss_pred HHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCC
Confidence 5678888888776 34653 3444433333221 23445555555433321111222457766445556799
Q ss_pred HhHHHHHHHHHHHCCCCCChHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 047178 196 LERLIKLFKGLEAFDRKPPEKSIVQRVADAYEVLGLLEEKERVLEKY 242 (287)
Q Consensus 196 ~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~G~leeA~~ll~~m 242 (287)
+++|...|++..+.. |+ ...|..+-..|...|+.++|...+.+.
T Consensus 436 ~~~A~~~l~rAl~L~--ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A 479 (517)
T PRK10153 436 TDEAYQAINKAIDLE--MS-WLNYVLLGKVYELKGDNRLAADAYSTA 479 (517)
T ss_pred HHHHHHHHHHHHHcC--CC-HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999999988876 77 478999999999999999999988763
No 148
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=87.25 E-value=10 Score=41.00 Aligned_cols=125 Identities=14% Similarity=0.146 Sum_probs=89.8
Q ss_pred HHHHHHHHccchhhHHHHHHHHHHCCCC--CChhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHH
Q 047178 114 KALLALEKEQQWHRVVQVIKWMLSKGQG--STMGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYY 191 (287)
Q Consensus 114 ~ai~~L~k~~~~~~A~qv~~~M~~~G~~--pd~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~ 191 (287)
.++.+|.+....+...-+.......... -++.-|.-+-++|...|+..+|..+|......... .....|=-+=.+|-
T Consensus 382 rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~-~~~~vw~~~a~c~~ 460 (895)
T KOG2076|consen 382 RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGY-QNAFVWYKLARCYM 460 (895)
T ss_pred hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccc-cchhhhHHHHHHHH
Confidence 4555566665555554555555555533 35567889999999999999999999999765321 12235667889999
Q ss_pred HcCCHhHHHHHHHHHHHCCCCCChHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 047178 192 RNNMLERLIKLFKGLEAFDRKPPEKSIVQRVADAYEVLGLLEEKERVLEK 241 (287)
Q Consensus 192 k~G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~G~leeA~~ll~~ 241 (287)
..|..++|.+.|...... .||..-.-.+|-.-+-..|+.|+|.+.++.
T Consensus 461 ~l~e~e~A~e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~ 508 (895)
T KOG2076|consen 461 ELGEYEEAIEFYEKVLIL--APDNLDARITLASLYQQLGNHEKALETLEQ 508 (895)
T ss_pred HHhhHHHHHHHHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHHHHHhc
Confidence 999999999999987764 455422234555668889999999988875
No 149
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=87.24 E-value=10 Score=40.99 Aligned_cols=65 Identities=15% Similarity=0.055 Sum_probs=30.1
Q ss_pred CHHHHHHHHHHH--HHccchhhHHHHHHHHHHCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhhhC
Q 047178 108 PVGSLKKALLAL--EKEQQWHRVVQVIKWMLSKGQGSTMGTCGQLIRALDMDHRAEEAHKFWEKRIGI 173 (287)
Q Consensus 108 ~~~s~~~ai~~L--~k~~~~~~A~qv~~~M~~~G~~pd~~TYnaLI~~y~K~G~leeA~~lF~eM~~~ 173 (287)
|...+..++.+| .+.|+.++|..+++.....+.. |..|-.+|-..|-..|+.|+|..+++.....
T Consensus 40 Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~ 106 (932)
T KOG2053|consen 40 PNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVHLYERANQK 106 (932)
T ss_pred CCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHHHHHHHHhh
Confidence 333344444432 3444555555444443322221 4445555555555555555555555554443
No 150
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=87.10 E-value=4.2 Score=41.23 Aligned_cols=113 Identities=17% Similarity=0.138 Sum_probs=74.7
Q ss_pred ccchhhHHHHHHHHHHCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHcCCHhHHHH
Q 047178 122 EQQWHRVVQVIKWMLSKGQGSTMGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNNMLERLIK 201 (287)
Q Consensus 122 ~~~~~~A~qv~~~M~~~G~~pd~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~G~~eeA~~ 201 (287)
.|.+++|.+++++-+...-.-+...||+=+. +-+.|++|+|.+.|-++..--+ ......--+-+.|--......|++
T Consensus 503 ngd~dka~~~ykeal~ndasc~ealfniglt-~e~~~~ldeald~f~klh~il~--nn~evl~qianiye~led~aqaie 579 (840)
T KOG2003|consen 503 NGDLDKAAEFYKEALNNDASCTEALFNIGLT-AEALGNLDEALDCFLKLHAILL--NNAEVLVQIANIYELLEDPAQAIE 579 (840)
T ss_pred cCcHHHHHHHHHHHHcCchHHHHHHHHhccc-HHHhcCHHHHHHHHHHHHHHHH--hhHHHHHHHHHHHHHhhCHHHHHH
Confidence 4667777777776654322222233444332 4577999999999998754211 111112235567777788889999
Q ss_pred HHHHHHHCCCCCChHHHHHHHHHHHHhcCCHHHHHHHH
Q 047178 202 LFKGLEAFDRKPPEKSIVQRVADAYEVLGLLEEKERVL 239 (287)
Q Consensus 202 Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~G~leeA~~ll 239 (287)
|+ |....+.|++..+.+-|-+.|-+.|+-..|.+.|
T Consensus 580 ~~--~q~~slip~dp~ilskl~dlydqegdksqafq~~ 615 (840)
T KOG2003|consen 580 LL--MQANSLIPNDPAILSKLADLYDQEGDKSQAFQCH 615 (840)
T ss_pred HH--HHhcccCCCCHHHHHHHHHHhhcccchhhhhhhh
Confidence 88 4566677877788888999999999988888765
No 151
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=86.72 E-value=0.18 Score=41.29 Aligned_cols=84 Identities=12% Similarity=0.187 Sum_probs=52.4
Q ss_pred HHHHHHHccchhhHHHHHHHHHHCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHcC
Q 047178 115 ALLALEKEQQWHRVVQVIKWMLSKGQGSTMGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNN 194 (287)
Q Consensus 115 ai~~L~k~~~~~~A~qv~~~M~~~G~~pd~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~G 194 (287)
++..+.+.+.......+++.+...+...+....|.|+..|++.++.++..+++.....-+ ...++..+.+.|
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~yd--------~~~~~~~c~~~~ 84 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNNYD--------LDKALRLCEKHG 84 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSSS---------CTHHHHHHHTTT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccccC--------HHHHHHHHHhcc
Confidence 455566666777777777777776666677788999999999988788887776332211 133444445555
Q ss_pred CHhHHHHHHHHH
Q 047178 195 MLERLIKLFKGL 206 (287)
Q Consensus 195 ~~eeA~~Lf~eM 206 (287)
.+++|.-++..|
T Consensus 85 l~~~a~~Ly~~~ 96 (143)
T PF00637_consen 85 LYEEAVYLYSKL 96 (143)
T ss_dssp SHHHHHHHHHCC
T ss_pred hHHHHHHHHHHc
Confidence 555555555443
No 152
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.45 E-value=35 Score=35.04 Aligned_cols=127 Identities=13% Similarity=0.102 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHHccchhhHHHHHHHHHHCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhhhC-----CCC--CCChhh
Q 047178 110 GSLKKALLALEKEQQWHRVVQVIKWMLSKGQGSTMGTCGQLIRALDMDHRAEEAHKFWEKRIGI-----DLH--SVPWQL 182 (287)
Q Consensus 110 ~s~~~ai~~L~k~~~~~~A~qv~~~M~~~G~~pd~~TYnaLI~~y~K~G~leeA~~lF~eM~~~-----g~~--sv~~~t 182 (287)
..+..++..+.+.+++.++...|.+-.++ ++.-+..||-.-..|.-.++++.|.+.|+.-.+- ++. ..|.+-
T Consensus 429 ~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~ 507 (606)
T KOG0547|consen 429 YAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVH 507 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhh
Confidence 34445566667777888888888886654 4444567888888888999999999999876431 110 011111
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 047178 183 CKSMIAIYYRNNMLERLIKLFKGLEAFDRKPPEKSIVQRVADAYEVLGLLEEKERVLEK 241 (287)
Q Consensus 183 yNsmIsgY~k~G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~G~leeA~~ll~~ 241 (287)
=.+|+-- =.+.+..|.+|+..-.+-+-+.| ..|-+|-..-...|++++|.++|++
T Consensus 508 Ka~l~~q--wk~d~~~a~~Ll~KA~e~Dpkce--~A~~tlaq~~lQ~~~i~eAielFEk 562 (606)
T KOG0547|consen 508 KALLVLQ--WKEDINQAENLLRKAIELDPKCE--QAYETLAQFELQRGKIDEAIELFEK 562 (606)
T ss_pred hhHhhhc--hhhhHHHHHHHHHHHHccCchHH--HHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 1122211 12788899999988877776665 4578888888888999999999983
No 153
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.38 E-value=26 Score=33.04 Aligned_cols=100 Identities=20% Similarity=0.133 Sum_probs=43.6
Q ss_pred CCCChhH-HHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCCh-hhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChHH
Q 047178 140 QGSTMGT-CGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPW-QLCKSMIAIYYRNNMLERLIKLFKGLEAFDRKPPEKS 217 (287)
Q Consensus 140 ~~pd~~T-YnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~-~tyNsmIsgY~k~G~~eeA~~Lf~eM~~~Gi~PD~~~ 217 (287)
.+++..+ |--++-+..-+|+.+.|...+.++..+--.|.-+ ..+..++ --.|+.++|++.++.+.+.+ |...+
T Consensus 47 ~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~l---Ea~~~~~~A~e~y~~lL~dd--pt~~v 121 (289)
T KOG3060|consen 47 LGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLL---EATGNYKEAIEYYESLLEDD--PTDTV 121 (289)
T ss_pred cCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHH---HHhhchhhHHHHHHHHhccC--cchhH
Confidence 4454432 3334444445566666666666654432111101 1122222 23455666666666665554 33334
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhH
Q 047178 218 IVQRVADAYEVLGLLEEKERVLEKYKD 244 (287)
Q Consensus 218 Ty~sLI~a~~k~G~leeA~~ll~~m~~ 244 (287)
+|--=|-..-..|.--+|.+-+.+|.+
T Consensus 122 ~~KRKlAilka~GK~l~aIk~ln~YL~ 148 (289)
T KOG3060|consen 122 IRKRKLAILKAQGKNLEAIKELNEYLD 148 (289)
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 444333333334444444444444433
No 154
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=86.03 E-value=4 Score=43.67 Aligned_cols=47 Identities=11% Similarity=0.024 Sum_probs=26.0
Q ss_pred HHHHHHHccchhhHHHHHHHHHHCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHh
Q 047178 115 ALLALEKEQQWHRVVQVIKWMLSKGQGSTMGTCGQLIRALDMDHRAEEAHKFWEKR 170 (287)
Q Consensus 115 ai~~L~k~~~~~~A~qv~~~M~~~G~~pd~~TYnaLI~~y~K~G~leeA~~lF~eM 170 (287)
+-..+...|.++.|.++|-+- ..++--|++|.++|++++|.++-++.
T Consensus 771 iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~da~kla~e~ 817 (1636)
T KOG3616|consen 771 IADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWEDAFKLAEEC 817 (1636)
T ss_pred HHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHHHHHHHHHh
Confidence 334455556666666555331 12455566666666666666665543
No 155
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=85.58 E-value=4.7 Score=40.53 Aligned_cols=67 Identities=10% Similarity=-0.058 Sum_probs=55.6
Q ss_pred CChhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCCh---hhHHHHHHHHHHcCCHhHHHHHHHHHHHCC
Q 047178 142 STMGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPW---QLCKSMIAIYYRNNMLERLIKLFKGLEAFD 210 (287)
Q Consensus 142 pd~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~---~tyNsmIsgY~k~G~~eeA~~Lf~eM~~~G 210 (287)
.+...|+-|=.+|.+.|++++|...|++-.+.+- -+. .+|..+-.+|.+.|++++|++.|++..+.+
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~P--d~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels 142 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALELNP--NPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY 142 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 3566889999999999999999999999776542 111 357889999999999999999999988863
No 156
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=85.34 E-value=16 Score=37.25 Aligned_cols=94 Identities=12% Similarity=-0.017 Sum_probs=72.7
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHcCCHhHHHHHHHH-HHHCCCCCChHHHHHH
Q 047178 143 TMGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNNMLERLIKLFKG-LEAFDRKPPEKSIVQR 221 (287)
Q Consensus 143 d~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~G~~eeA~~Lf~e-M~~~Gi~PD~~~Ty~s 221 (287)
-.++|.++|+..-+..-++.|+.+|-+....+..+..++.|+++|.-||. |...-|..+|+- |.. .||+.+...-
T Consensus 396 ~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~---f~d~~~y~~k 471 (660)
T COG5107 396 LTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK---FPDSTLYKEK 471 (660)
T ss_pred hhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh---CCCchHHHHH
Confidence 34688999999999999999999999998877655556789999998875 566778888863 222 4665455566
Q ss_pred HHHHHHhcCCHHHHHHHHH
Q 047178 222 VADAYEVLGLLEEKERVLE 240 (287)
Q Consensus 222 LI~a~~k~G~leeA~~ll~ 240 (287)
.++-+...++-+.|+.+|+
T Consensus 472 yl~fLi~inde~naraLFe 490 (660)
T COG5107 472 YLLFLIRINDEENARALFE 490 (660)
T ss_pred HHHHHHHhCcHHHHHHHHH
Confidence 6777778888888888887
No 157
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=85.23 E-value=14 Score=37.18 Aligned_cols=121 Identities=16% Similarity=0.089 Sum_probs=78.2
Q ss_pred cchhhHHHHHHHHHHCCCCCChhHHHHHH-HHHHHcCCHHHHHHHHHHhhhC--CCCCCChhhHHHHHHHHHHcCCHhHH
Q 047178 123 QQWHRVVQVIKWMLSKGQGSTMGTCGQLI-RALDMDHRAEEAHKFWEKRIGI--DLHSVPWQLCKSMIAIYYRNNMLERL 199 (287)
Q Consensus 123 ~~~~~A~qv~~~M~~~G~~pd~~TYnaLI-~~y~K~G~leeA~~lF~eM~~~--g~~sv~~~tyNsmIsgY~k~G~~eeA 199 (287)
...+.+.+++.+|..+ -|+..-|...- ..+...|++++|.+.|++.... ....+....|=-+.-.|.-.+++++|
T Consensus 247 ~~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A 324 (468)
T PF10300_consen 247 VPLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEA 324 (468)
T ss_pred CCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHH
Confidence 4466778888888764 47765554432 3356789999999999976531 11111122333455567888999999
Q ss_pred HHHHHHHHHCCCCCChHHHHHHHHH-HHHhcCCH-------HHHHHHHHHHhHHHh
Q 047178 200 IKLFKGLEAFDRKPPEKSIVQRVAD-AYEVLGLL-------EEKERVLEKYKDLFT 247 (287)
Q Consensus 200 ~~Lf~eM~~~Gi~PD~~~Ty~sLI~-a~~k~G~l-------eeA~~ll~~m~~l~~ 247 (287)
.+.|..+.+..--- ..+|.=+.- ++...|+. ++|.++|.+.+.+..
T Consensus 325 ~~~f~~L~~~s~WS--ka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~ 378 (468)
T PF10300_consen 325 AEYFLRLLKESKWS--KAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQ 378 (468)
T ss_pred HHHHHHHHhccccH--HHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHh
Confidence 99999998754332 233433332 45567888 777788877777664
No 158
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=85.17 E-value=22 Score=36.85 Aligned_cols=73 Identities=21% Similarity=0.220 Sum_probs=38.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChHHHHHHHHHH
Q 047178 148 GQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNNMLERLIKLFKGLEAFDRKPPEKSIVQRVADA 225 (287)
Q Consensus 148 naLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a 225 (287)
+-|=..|.|.++.++|...|++-.... +.++.+|+++=-.|...|+++.|.+.|.+ ...+.||. .+.+.++..
T Consensus 459 ~NLGH~~Rkl~~~~eAI~~~q~aL~l~--~k~~~~~asig~iy~llgnld~Aid~fhK--aL~l~p~n-~~~~~lL~~ 531 (611)
T KOG1173|consen 459 NNLGHAYRKLNKYEEAIDYYQKALLLS--PKDASTHASIGYIYHLLGNLDKAIDHFHK--ALALKPDN-IFISELLKL 531 (611)
T ss_pred HhHHHHHHHHhhHHHHHHHHHHHHHcC--CCchhHHHHHHHHHHHhcChHHHHHHHHH--HHhcCCcc-HHHHHHHHH
Confidence 334445556666666666666554432 12344555555555566666666666654 33455664 334445443
No 159
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=84.96 E-value=46 Score=35.44 Aligned_cols=102 Identities=16% Similarity=0.130 Sum_probs=74.0
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChHHHHHHHHH
Q 047178 145 GTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNNMLERLIKLFKGLEAFDRKPPEKSIVQRVAD 224 (287)
Q Consensus 145 ~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~ 224 (287)
+.|-.....+-++|++..|..++.+..+.+-. +.-.|=+-+..-..+..+|+|..||..-... .|.+ -.|.--++
T Consensus 585 ~lwlM~ake~w~agdv~~ar~il~~af~~~pn--seeiwlaavKle~en~e~eraR~llakar~~--sgTe-Rv~mKs~~ 659 (913)
T KOG0495|consen 585 ILWLMYAKEKWKAGDVPAARVILDQAFEANPN--SEEIWLAAVKLEFENDELERARDLLAKARSI--SGTE-RVWMKSAN 659 (913)
T ss_pred hHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC--cHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcc-hhhHHHhH
Confidence 44455556667889999999999988876532 2235777888889999999999999986654 4544 33444444
Q ss_pred HHHhcCCHHHHHHHHHHHhHHHhhhhc
Q 047178 225 AYEVLGLLEEKERVLEKYKDLFTEKEK 251 (287)
Q Consensus 225 a~~k~G~leeA~~ll~~m~~l~~~~~~ 251 (287)
----.+.+++|.+++++....|-.|-|
T Consensus 660 ~er~ld~~eeA~rllEe~lk~fp~f~K 686 (913)
T KOG0495|consen 660 LERYLDNVEEALRLLEEALKSFPDFHK 686 (913)
T ss_pred HHHHhhhHHHHHHHHHHHHHhCCchHH
Confidence 556678999999999887777766654
No 160
>PRK04841 transcriptional regulator MalT; Provisional
Probab=84.91 E-value=34 Score=36.30 Aligned_cols=130 Identities=13% Similarity=0.084 Sum_probs=84.4
Q ss_pred HHHHccchhhHHHHHHHHHHCC--CCC---ChhHHHHHHHHHHHcCCHHHHHHHHHHhhh----CCCCCCC--hhhHHHH
Q 047178 118 ALEKEQQWHRVVQVIKWMLSKG--QGS---TMGTCGQLIRALDMDHRAEEAHKFWEKRIG----IDLHSVP--WQLCKSM 186 (287)
Q Consensus 118 ~L~k~~~~~~A~qv~~~M~~~G--~~p---d~~TYnaLI~~y~K~G~leeA~~lF~eM~~----~g~~sv~--~~tyNsm 186 (287)
.+...|++++|...+....... .++ ...+++.+-..+...|++++|...+++... .+....+ ...+..+
T Consensus 500 ~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 579 (903)
T PRK04841 500 VHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIR 579 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHH
Confidence 3566888999988887765421 111 123455566678889999999999887643 2211111 1234455
Q ss_pred HHHHHHcCCHhHHHHHHHHHHHC--CCCCC-hHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHHh
Q 047178 187 IAIYYRNNMLERLIKLFKGLEAF--DRKPP-EKSIVQRVADAYEVLGLLEEKERVLEKYKDLFT 247 (287)
Q Consensus 187 IsgY~k~G~~eeA~~Lf~eM~~~--Gi~PD-~~~Ty~sLI~a~~k~G~leeA~~ll~~m~~l~~ 247 (287)
-..+...|++++|...+.+.... ...|. ....+..+...+...|+.++|...+++...++.
T Consensus 580 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~ 643 (903)
T PRK04841 580 AQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLG 643 (903)
T ss_pred HHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 55677789999999999887542 11122 223344455677789999999999888766544
No 161
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=84.74 E-value=28 Score=36.62 Aligned_cols=131 Identities=11% Similarity=0.033 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHHccchhhHHHHHHHHHHCCCCCChh-HHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHH-HHH
Q 047178 110 GSLKKALLALEKEQQWHRVVQVIKWMLSKGQGSTMG-TCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCK-SMI 187 (287)
Q Consensus 110 ~s~~~ai~~L~k~~~~~~A~qv~~~M~~~G~~pd~~-TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyN-smI 187 (287)
+++--++..+-+.|+.+.|...++.-. +..|+.+ -|-+=-..++.+|.+++|...+++-.+-|. +++.-| -=.
T Consensus 372 Wt~y~laqh~D~~g~~~~A~~yId~AI--dHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~---aDR~INsKcA 446 (700)
T KOG1156|consen 372 WTLYFLAQHYDKLGDYEVALEYIDLAI--DHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDT---ADRAINSKCA 446 (700)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHh--ccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccc---hhHHHHHHHH
Confidence 445567777888899999988887643 4556543 344445778999999999999999887764 222223 112
Q ss_pred HHHHHcCCHhHHHHHHHHHHHCCCCCChHHHHHHH----------HHHHHhcCCHHHHHHHHHHHhHHHhh
Q 047178 188 AIYYRNNMLERLIKLFKGLEAFDRKPPEKSIVQRV----------ADAYEVLGLLEEKERVLEKYKDLFTE 248 (287)
Q Consensus 188 sgY~k~G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sL----------I~a~~k~G~leeA~~ll~~m~~l~~~ 248 (287)
.-..++++.++|.++....-..|. + ++-+-.- -.+|.+.|.+.+|++=|.+....|+.
T Consensus 447 KYmLrAn~i~eA~~~~skFTr~~~--~-~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k~~~~ 514 (700)
T KOG1156|consen 447 KYMLRANEIEEAEEVLSKFTREGF--G-AVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIEKHYKT 514 (700)
T ss_pred HHHHHccccHHHHHHHHHhhhccc--c-hhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 234488999999999988888876 3 2222111 24788888888888777666666554
No 162
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=84.66 E-value=51 Score=33.79 Aligned_cols=91 Identities=19% Similarity=0.114 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChHHHHHHHHHH
Q 047178 146 TCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNNMLERLIKLFKGLEAFDRKPPEKSIVQRVADA 225 (287)
Q Consensus 146 TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a 225 (287)
||.-|-.-|...|+.++|.++.++-.+..- ...-.|-+--..|-+.|++++|.+.+++-...... |. ..-+-....
T Consensus 196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~htP--t~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~-DR-yiNsK~aKy 271 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYEKALEYIDKAIEHTP--TLVELYMTKARILKHAGDLKEAAEAMDEARELDLA-DR-YINSKCAKY 271 (517)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCC--CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh-hH-HHHHHHHHH
Confidence 344455567789999999999998877541 11235777788888999999999999988777654 53 666677778
Q ss_pred HHhcCCHHHHHHHHH
Q 047178 226 YEVLGLLEEKERVLE 240 (287)
Q Consensus 226 ~~k~G~leeA~~ll~ 240 (287)
+-+.|++++|.+++.
T Consensus 272 ~LRa~~~e~A~~~~~ 286 (517)
T PF12569_consen 272 LLRAGRIEEAEKTAS 286 (517)
T ss_pred HHHCCCHHHHHHHHH
Confidence 888999999988765
No 163
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=84.46 E-value=13 Score=34.26 Aligned_cols=130 Identities=17% Similarity=0.227 Sum_probs=63.8
Q ss_pred HHHHHHHHHHccchhhHHHHHHHHHH----CCCCCC-hhHHHHHHHHHHHcCCHHHHHHHHHHhhh----CCCCCCCh--
Q 047178 112 LKKALLALEKEQQWHRVVQVIKWMLS----KGQGST-MGTCGQLIRALDMDHRAEEAHKFWEKRIG----IDLHSVPW-- 180 (287)
Q Consensus 112 ~~~ai~~L~k~~~~~~A~qv~~~M~~----~G~~pd-~~TYnaLI~~y~K~G~leeA~~lF~eM~~----~g~~sv~~-- 180 (287)
+..+-..+...++|++|.+.|....+ .|-..+ ...|.-....| +.++.++|...+++-.. .|- +..
T Consensus 38 y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~-k~~~~~~Ai~~~~~A~~~y~~~G~--~~~aA 114 (282)
T PF14938_consen 38 YEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCY-KKGDPDEAIECYEKAIEIYREAGR--FSQAA 114 (282)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH-HHTTHHHHHHHHHHHHHHHHHCT---HHHHH
T ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HhhCHHHHHHHHHHHHHHHHhcCc--HHHHH
Confidence 34444555555666666555544321 111111 11233333333 33366666655555432 221 110
Q ss_pred hhHHHHHHHHHHc-CCHhHHHHHHHHHH----HCCCCCChHHHHHHHHHHHHhcCCHHHHHHHHHHHhH
Q 047178 181 QLCKSMIAIYYRN-NMLERLIKLFKGLE----AFDRKPPEKSIVQRVADAYEVLGLLEEKERVLEKYKD 244 (287)
Q Consensus 181 ~tyNsmIsgY~k~-G~~eeA~~Lf~eM~----~~Gi~PD~~~Ty~sLI~a~~k~G~leeA~~ll~~m~~ 244 (287)
..+.-+=..|-.. |++++|++.|.+-. ..|-.-...-.+.-+...+.+.|++++|.+++++...
T Consensus 115 ~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~ 183 (282)
T PF14938_consen 115 KCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAK 183 (282)
T ss_dssp HHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 1344444455566 78888888887653 3342111123456677789999999999999986543
No 164
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=84.39 E-value=7.8 Score=39.96 Aligned_cols=55 Identities=18% Similarity=0.276 Sum_probs=24.3
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChHHHHHHHHHHHHhcCCHHHHHHHH
Q 047178 183 CKSMIAIYYRNNMLERLIKLFKGLEAFDRKPPEKSIVQRVADAYEVLGLLEEKERVL 239 (287)
Q Consensus 183 yNsmIsgY~k~G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~G~leeA~~ll 239 (287)
+|-|=+.|.+.+++++|+..|+.-... .|....||+++-=.|...|+++.|..-|
T Consensus 458 ~~NLGH~~Rkl~~~~eAI~~~q~aL~l--~~k~~~~~asig~iy~llgnld~Aid~f 512 (611)
T KOG1173|consen 458 LNNLGHAYRKLNKYEEAIDYYQKALLL--SPKDASTHASIGYIYHLLGNLDKAIDHF 512 (611)
T ss_pred HHhHHHHHHHHhhHHHHHHHHHHHHHc--CCCchhHHHHHHHHHHHhcChHHHHHHH
Confidence 444444455555555555555443322 1212344444444444455555544433
No 165
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=83.91 E-value=16 Score=29.54 Aligned_cols=56 Identities=13% Similarity=0.237 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHcCCHhHHHHHHH
Q 047178 146 TCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNNMLERLIKLFK 204 (287)
Q Consensus 146 TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~G~~eeA~~Lf~ 204 (287)
-...+|..|-..+....+..+++.+...+. .....+|.+|..|++.+ ..+.++.|.
T Consensus 9 ~~~~vv~~~~~~~~~~~l~~yLe~~~~~~~--~~~~~~~~li~ly~~~~-~~~ll~~l~ 64 (140)
T smart00299 9 DVSEVVELFEKRNLLEELIPYLESALKLNS--ENPALQTKLIELYAKYD-PQKEIERLD 64 (140)
T ss_pred CHHHHHHHHHhCCcHHHHHHHHHHHHccCc--cchhHHHHHHHHHHHHC-HHHHHHHHH
Confidence 356788889889999999999999988763 33347999999999875 456666666
No 166
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=82.10 E-value=62 Score=32.91 Aligned_cols=119 Identities=13% Similarity=-0.042 Sum_probs=85.3
Q ss_pred HHHHHHHHHccchhhHHHHHHHHHHCCCCCC-hhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHH
Q 047178 113 KKALLALEKEQQWHRVVQVIKWMLSKGQGST-MGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYY 191 (287)
Q Consensus 113 ~~ai~~L~k~~~~~~A~qv~~~M~~~G~~pd-~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~ 191 (287)
.-+...+.+.++.++|.+.++.++.. .|+ ....-.+=++|.+.|+..+|..++..-...+- .+...|..|=.+|.
T Consensus 344 ~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p--~dp~~w~~LAqay~ 419 (484)
T COG4783 344 ELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDP--EDPNGWDLLAQAYA 419 (484)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCC--CCchHHHHHHHHHH
Confidence 34566788999999999999998874 455 44455567889999999999999998876542 23357999999999
Q ss_pred HcCCHhHHHHHHHHHHHCCCCCChHHHHHHHHHHHHhcCCHHHH
Q 047178 192 RNNMLERLIKLFKGLEAFDRKPPEKSIVQRVADAYEVLGLLEEK 235 (287)
Q Consensus 192 k~G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~G~leeA 235 (287)
..|+..+|..-..|+....=.++....+-+...--.+.|.++-+
T Consensus 420 ~~g~~~~a~~A~AE~~~~~G~~~~A~~~l~~A~~~~~~~~~~~a 463 (484)
T COG4783 420 ELGNRAEALLARAEGYALAGRLEQAIIFLMRASQQVKLGFPDWA 463 (484)
T ss_pred HhCchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhccCCcHHHH
Confidence 99999999988888765544444334343333344444544433
No 167
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=82.08 E-value=15 Score=35.16 Aligned_cols=91 Identities=16% Similarity=0.084 Sum_probs=49.8
Q ss_pred HHHccchhhHHHHHHHHHHCCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHcCCHh
Q 047178 119 LEKEQQWHRVVQVIKWMLSKGQGS-TMGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNNMLE 197 (287)
Q Consensus 119 L~k~~~~~~A~qv~~~M~~~G~~p-d~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~G~~e 197 (287)
+-+.+++.+|++.+..-++ +.| |.+-|.-=-.+|++-|..+.|.+=-+.-..-+- --+.+|..|=-+|.-.|+++
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp--~yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDP--HYSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcCh--HHHHHHHHHHHHHHccCcHH
Confidence 4455666666666665554 333 333344445566666666666665554443321 11235666666666666666
Q ss_pred HHHHHHHHHHHCCCCCCh
Q 047178 198 RLIKLFKGLEAFDRKPPE 215 (287)
Q Consensus 198 eA~~Lf~eM~~~Gi~PD~ 215 (287)
+|++-|+.-. .+.||.
T Consensus 167 ~A~~aykKaL--eldP~N 182 (304)
T KOG0553|consen 167 EAIEAYKKAL--ELDPDN 182 (304)
T ss_pred HHHHHHHhhh--ccCCCc
Confidence 6666665432 345664
No 168
>PRK15331 chaperone protein SicA; Provisional
Probab=82.07 E-value=11 Score=32.83 Aligned_cols=86 Identities=9% Similarity=0.080 Sum_probs=56.4
Q ss_pred HHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHcCCHhHHHHHHHHHHHCCC-CCChHHHHHHHHHHHHhcCCH
Q 047178 154 LDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNNMLERLIKLFKGLEAFDR-KPPEKSIVQRVADAYEVLGLL 232 (287)
Q Consensus 154 y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~G~~eeA~~Lf~eM~~~Gi-~PD~~~Ty~sLI~a~~k~G~l 232 (287)
+-..|++++|+.+|.-+..-+.. +...|..|=.+|-..+.+++|+.+|......+. -|- ..|- .-..|-..|+.
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d~~--n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~--p~f~-agqC~l~l~~~ 121 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYDFY--NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYR--PVFF-TGQCQLLMRKA 121 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcC--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCC--ccch-HHHHHHHhCCH
Confidence 34678999999999877665532 222456666667778889999998886654432 121 1122 33467788899
Q ss_pred HHHHHHHHHHhH
Q 047178 233 EEKERVLEKYKD 244 (287)
Q Consensus 233 eeA~~ll~~m~~ 244 (287)
+.|+..|+....
T Consensus 122 ~~A~~~f~~a~~ 133 (165)
T PRK15331 122 AKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHh
Confidence 999888775544
No 169
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=80.71 E-value=25 Score=38.47 Aligned_cols=87 Identities=11% Similarity=0.081 Sum_probs=66.1
Q ss_pred HcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHcCCHhHHHHHHHHHHHCCC-CCChHHHHHHHHHHHHhcCCHHH
Q 047178 156 MDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNNMLERLIKLFKGLEAFDR-KPPEKSIVQRVADAYEVLGLLEE 234 (287)
Q Consensus 156 K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~G~~eeA~~Lf~eM~~~Gi-~PD~~~Ty~sLI~a~~k~G~lee 234 (287)
..+..+.|.++|.+....+- .+.+.=|-+=-.++..|++++|..+|....+... .+|. |--+-+.|...|++-.
T Consensus 624 ~kk~~~KAlq~y~kvL~~dp--kN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv---~lNlah~~~e~~qy~~ 698 (1018)
T KOG2002|consen 624 EKKHQEKALQLYGKVLRNDP--KNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDV---WLNLAHCYVEQGQYRL 698 (1018)
T ss_pred HHHHHHHHHHHHHHHHhcCc--chhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCce---eeeHHHHHHHHHHHHH
Confidence 34578899999999876541 2222334455568899999999999999999887 5662 6778899999999999
Q ss_pred HHHHHHHHhHHHh
Q 047178 235 KERVLEKYKDLFT 247 (287)
Q Consensus 235 A~~ll~~m~~l~~ 247 (287)
|.++++....-|.
T Consensus 699 AIqmYe~~lkkf~ 711 (1018)
T KOG2002|consen 699 AIQMYENCLKKFY 711 (1018)
T ss_pred HHHHHHHHHHHhc
Confidence 9999986554443
No 170
>PRK04841 transcriptional regulator MalT; Provisional
Probab=80.62 E-value=83 Score=33.40 Aligned_cols=130 Identities=8% Similarity=-0.022 Sum_probs=83.1
Q ss_pred HHHHHccchhhHHHHHHHHHHCCCC-CChhHH-----HHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChh---hHHHHH
Q 047178 117 LALEKEQQWHRVVQVIKWMLSKGQG-STMGTC-----GQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQ---LCKSMI 187 (287)
Q Consensus 117 ~~L~k~~~~~~A~qv~~~M~~~G~~-pd~~TY-----naLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~---tyNsmI 187 (287)
..+...|+.+.|.+.+.......-. .....+ ...+..+...|..+.|..++......... .++. .+..+-
T Consensus 620 ~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~-~~~~~~~~~~~~a 698 (903)
T PRK04841 620 KISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFA-NNHFLQGQWRNIA 698 (903)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCc-cchhHHHHHHHHH
Confidence 3456678888888877766432110 111111 11234456689999999998776542211 1211 134566
Q ss_pred HHHHHcCCHhHHHHHHHHHHH----CCCCCChHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHHh
Q 047178 188 AIYYRNNMLERLIKLFKGLEA----FDRKPPEKSIVQRVADAYEVLGLLEEKERVLEKYKDLFT 247 (287)
Q Consensus 188 sgY~k~G~~eeA~~Lf~eM~~----~Gi~PD~~~Ty~sLI~a~~k~G~leeA~~ll~~m~~l~~ 247 (287)
.++...|++++|..+|.+... .|..++.+.+...+-.++...|+.++|...+.+...+..
T Consensus 699 ~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~ 762 (903)
T PRK04841 699 RAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLAN 762 (903)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhC
Confidence 678899999999999998764 355555445566666788899999999988886655543
No 171
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=80.58 E-value=26 Score=30.18 Aligned_cols=54 Identities=20% Similarity=0.391 Sum_probs=24.8
Q ss_pred HHHHHHHcCCHhHHHHHHHHHHHCCCCCChHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 047178 186 MIAIYYRNNMLERLIKLFKGLEAFDRKPPEKSIVQRVADAYEVLGLLEEKERVLEK 241 (287)
Q Consensus 186 mIsgY~k~G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~G~leeA~~ll~~ 241 (287)
-++.+.+.|+-|...++..++...+ .|+. ...-.+-.||.+.|...++.+++.+
T Consensus 92 ALd~lv~~~kkDqLdki~~~l~kn~-~~~p-~~L~kia~Ay~klg~~r~~~ell~~ 145 (161)
T PF09205_consen 92 ALDILVKQGKKDQLDKIYNELKKNE-EINP-EFLVKIANAYKKLGNTREANELLKE 145 (161)
T ss_dssp HHHHHHHTT-HHHHHHHHHHH------S-H-HHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHhhcc-CCCH-HHHHHHHHHHHHhcchhhHHHHHHH
Confidence 3445555566666666665554322 2221 2334555566666666666665543
No 172
>PLN02789 farnesyltranstransferase
Probab=80.29 E-value=56 Score=31.20 Aligned_cols=105 Identities=9% Similarity=-0.058 Sum_probs=71.7
Q ss_pred HHcc-chhhHHHHHHHHHHCCCCCChhHHHHHHHHHHHcCC--HHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHcCCH
Q 047178 120 EKEQ-QWHRVVQVIKWMLSKGQGSTMGTCGQLIRALDMDHR--AEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNNML 196 (287)
Q Consensus 120 ~k~~-~~~~A~qv~~~M~~~G~~pd~~TYnaLI~~y~K~G~--leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~G~~ 196 (287)
.+.+ ..++++.+++.+.+..- .+..+|+----.+-+.|. .+++..++++|.+.+- -+-..|+-.-..+.+.|.+
T Consensus 82 ~~L~~~l~eeL~~~~~~i~~np-knyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dp--kNy~AW~~R~w~l~~l~~~ 158 (320)
T PLN02789 82 EALDADLEEELDFAEDVAEDNP-KNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDA--KNYHAWSHRQWVLRTLGGW 158 (320)
T ss_pred HHcchhHHHHHHHHHHHHHHCC-cchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCc--ccHHHHHHHHHHHHHhhhH
Confidence 3444 46888888888876432 344456544333455565 3678888889987663 3445788888888999999
Q ss_pred hHHHHHHHHHHHCCCCCChHHHHHHHHHHHHhc
Q 047178 197 ERLIKLFKGLEAFDRKPPEKSIVQRVADAYEVL 229 (287)
Q Consensus 197 eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~ 229 (287)
++|++.+.+|.+.+..-. ..|+-.--.+.+.
T Consensus 159 ~eeL~~~~~~I~~d~~N~--sAW~~R~~vl~~~ 189 (320)
T PLN02789 159 EDELEYCHQLLEEDVRNN--SAWNQRYFVITRS 189 (320)
T ss_pred HHHHHHHHHHHHHCCCch--hHHHHHHHHHHhc
Confidence 999999999999887655 3455444444454
No 173
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=80.27 E-value=39 Score=36.02 Aligned_cols=121 Identities=12% Similarity=-0.013 Sum_probs=58.9
Q ss_pred cCcccccC---cccccccccCcccCcCCCCcccHHHHHHHHHc-----c-----CCC--cchHHHHHHHH-HHccCC---
Q 047178 46 TNQSVDQY---PERNAASTRNFRIGENVPRKDKINFLVNTLLD-----L-----KNS--KEDVYGTLDAW-VAWEQN--- 106 (287)
Q Consensus 46 ~~~~~~~~---~~~~~~~~~~~~~~~~~s~~~~~~~Li~~l~~-----l-----g~~--~~~v~~~Ld~~-~~~~~~--- 106 (287)
+..++.|. +|.-.+.-|.+++|++++..++...+++..-. + .+. .-.+-..++.- ...+..
T Consensus 338 ~~w~i~~salllr~~~E~~~~RtveR~~~q~q~lv~~iq~~e~~v~nRlsy~ya~~lpp~Wq~q~~laell~slGitksA 417 (777)
T KOG1128|consen 338 KYWSIQASALLLRFLLESTRSRTVERALSQMQFLVKAIQMKEYSVLNRLSYIYAPHLPPIWQLQRLLAELLLSLGITKSA 417 (777)
T ss_pred CceeeehHHHHHHHHHHhcCccchhhHHHHHHHHHHHHhhccHhHHhcccccccCCCCCcchHHHHHHHHHHHcchHHHH
Confidence 44556665 56556666677788888888877766664211 0 000 00000111111 000000
Q ss_pred ---C-CHHHHHHHHHHHHHccchhhHHHHHHHHHHCCCCCChhHHHHHHHHHHHcCCHHHHHHHHH
Q 047178 107 ---F-PVGSLKKALLALEKEQQWHRVVQVIKWMLSKGQGSTMGTCGQLIRALDMDHRAEEAHKFWE 168 (287)
Q Consensus 107 ---~-~~~s~~~ai~~L~k~~~~~~A~qv~~~M~~~G~~pd~~TYnaLI~~y~K~G~leeA~~lF~ 168 (287)
| .+.-+...+..|+..|+.++|.++...-.+ -.||..-|..|-+..-..-..|.|.++++
T Consensus 418 l~I~Erlemw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~~d~s~yEkawElsn 481 (777)
T KOG1128|consen 418 LVIFERLEMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVLHDPSLYEKAWELSN 481 (777)
T ss_pred HHHHHhHHHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhccChHHHHHHHHHhh
Confidence 0 011223445556666666666666655554 35777777776666544334444444444
No 174
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=80.16 E-value=33 Score=35.06 Aligned_cols=66 Identities=11% Similarity=0.051 Sum_probs=53.1
Q ss_pred CChhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHcCCHhHHHHHHHHHHHCC
Q 047178 142 STMGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNNMLERLIKLFKGLEAFD 210 (287)
Q Consensus 142 pd~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~G~~eeA~~Lf~eM~~~G 210 (287)
.+..+|-++--.+...|+.++|...|++....+ +.+..|..+-..|...|++++|.+.|.+-....
T Consensus 418 ~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~---ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 418 VLPRIYEILAVQALVKGKTDEAYQAINKAIDLE---MSWLNYVLLGKVYELKGDNRLAADAYSTAFNLR 483 (517)
T ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 355678777555556799999999999998865 346679999999999999999999998865543
No 175
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=79.69 E-value=48 Score=33.83 Aligned_cols=120 Identities=13% Similarity=0.153 Sum_probs=91.2
Q ss_pred HHHHHccchhhHHHHHHHHHHCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHcCCH
Q 047178 117 LALEKEQQWHRVVQVIKWMLSKGQGSTMGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNNML 196 (287)
Q Consensus 117 ~~L~k~~~~~~A~qv~~~M~~~G~~pd~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~G~~ 196 (287)
+-+.-.++.++|+..|+.-++.+- .....|+-|=+-|....+...|.+-+..-++-+ +-+-..|=.|=.+|.-.+++
T Consensus 338 NYYSlr~eHEKAv~YFkRALkLNp-~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~--p~DyRAWYGLGQaYeim~Mh 414 (559)
T KOG1155|consen 338 NYYSLRSEHEKAVMYFKRALKLNP-KYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN--PRDYRAWYGLGQAYEIMKMH 414 (559)
T ss_pred hHHHHHHhHHHHHHHHHHHHhcCc-chhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC--chhHHHHhhhhHHHHHhcch
Confidence 334555667888888888766321 234567777788999999999998888776543 23334677777888888888
Q ss_pred hHHHHHHHHHHHCCCCCChHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 047178 197 ERLIKLFKGLEAFDRKPPEKSIVQRVADAYEVLGLLEEKERVLEK 241 (287)
Q Consensus 197 eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~G~leeA~~ll~~ 241 (287)
.=|+-.|++- .-++|++-..+.+|-+.|.+++++++|.+-+..
T Consensus 415 ~YaLyYfqkA--~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykr 457 (559)
T KOG1155|consen 415 FYALYYFQKA--LELKPNDSRLWVALGECYEKLNRLEEAIKCYKR 457 (559)
T ss_pred HHHHHHHHHH--HhcCCCchHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 8899888874 457898778899999999999999999987763
No 176
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=79.44 E-value=25 Score=34.49 Aligned_cols=91 Identities=13% Similarity=0.003 Sum_probs=66.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChHHHH-HHHHHHH
Q 047178 148 GQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNNMLERLIKLFKGLEAFDRKPPEKSIV-QRVADAY 226 (287)
Q Consensus 148 naLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~G~~eeA~~Lf~eM~~~Gi~PD~~~Ty-~sLI~a~ 226 (287)
+-|=.+|-+-|...+|+..|..-...--. + -||--|-..|-+..+++.|+.+|.+=.+ ..|-+ +|| .-....+
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~-~--dTfllLskvY~ridQP~~AL~~~~~gld--~fP~~-VT~l~g~ARi~ 300 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPH-P--DTFLLLSKVYQRIDQPERALLVIGEGLD--SFPFD-VTYLLGQARIH 300 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCc-h--hHHHHHHHHHHHhccHHHHHHHHhhhhh--cCCch-hhhhhhhHHHH
Confidence 67888999999999999999876553211 2 3688888999999999999999987554 35655 444 3444556
Q ss_pred HhcCCHHHHHHHHHHHhH
Q 047178 227 EVLGLLEEKERVLEKYKD 244 (287)
Q Consensus 227 ~k~G~leeA~~ll~~m~~ 244 (287)
...+..++|.++++...+
T Consensus 301 eam~~~~~a~~lYk~vlk 318 (478)
T KOG1129|consen 301 EAMEQQEDALQLYKLVLK 318 (478)
T ss_pred HHHHhHHHHHHHHHHHHh
Confidence 667777777777765543
No 177
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.20 E-value=58 Score=31.72 Aligned_cols=159 Identities=13% Similarity=0.031 Sum_probs=89.2
Q ss_pred HHHHHHHHHcc---CCCcchHHHHHHHHHHccCCCCHHHHHHHHHHHHHccchhhHHHHHHHHHHCCCC-----------
Q 047178 76 INFLVNTLLDL---KNSKEDVYGTLDAWVAWEQNFPVGSLKKALLALEKEQQWHRVVQVIKWMLSKGQG----------- 141 (287)
Q Consensus 76 ~~~Li~~l~~l---g~~~~~v~~~Ld~~~~~~~~~~~~s~~~ai~~L~k~~~~~~A~qv~~~M~~~G~~----------- 141 (287)
+..+++.-|-+ |+-..+| ....+..+...--+...++.++..+.+ ++...|+....+++++|+.
T Consensus 144 Ad~~in~gCllykegqyEaAv-qkFqaAlqvsGyqpllAYniALaHy~~-~qyasALk~iSEIieRG~r~HPElgIGm~t 221 (459)
T KOG4340|consen 144 ADGQINLGCLLYKEGQYEAAV-QKFQAALQVSGYQPLLAYNLALAHYSS-RQYASALKHISEIIERGIRQHPELGIGMTT 221 (459)
T ss_pred cchhccchheeeccccHHHHH-HHHHHHHhhcCCCchhHHHHHHHHHhh-hhHHHHHHHHHHHHHhhhhcCCccCcccee
Confidence 44566654433 3332222 333333333333356778877776654 6788999999999998854
Q ss_pred --CChh--------HHHHHHHHH-------HHcCCHHHHHHHHHHhhhCCCCCCChhh-HHHHHHHHHHcCCHhHHHHHH
Q 047178 142 --STMG--------TCGQLIRAL-------DMDHRAEEAHKFWEKRIGIDLHSVPWQL-CKSMIAIYYRNNMLERLIKLF 203 (287)
Q Consensus 142 --pd~~--------TYnaLI~~y-------~K~G~leeA~~lF~eM~~~g~~sv~~~t-yNsmIsgY~k~G~~eeA~~Lf 203 (287)
||+. .-++|+.++ .+.|+.+.|.+-+-.|+-+.-.-.+.+| -|.-|. --+|++.+.++-+
T Consensus 222 egiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~--n~~~~p~~g~~KL 299 (459)
T KOG4340|consen 222 EGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM--NMDARPTEGFEKL 299 (459)
T ss_pred ccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh--cccCCccccHHHH
Confidence 2321 124455554 5789999999999998754321122222 332222 1234455555545
Q ss_pred HHHHHCCCCCChHHHHHHHHHHHHhcCCHHHHHHHHH
Q 047178 204 KGLEAFDRKPPEKSIVQRVADAYEVLGLLEEKERVLE 240 (287)
Q Consensus 204 ~eM~~~Gi~PD~~~Ty~sLI~a~~k~G~leeA~~ll~ 240 (287)
.-+.+..-.|. -||.-++--||+..-++-|-.|+.
T Consensus 300 qFLL~~nPfP~--ETFANlLllyCKNeyf~lAADvLA 334 (459)
T KOG4340|consen 300 QFLLQQNPFPP--ETFANLLLLYCKNEYFDLAADVLA 334 (459)
T ss_pred HHHHhcCCCCh--HHHHHHHHHHhhhHHHhHHHHHHh
Confidence 54444444443 345555557777777777766655
No 178
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=77.20 E-value=27 Score=32.73 Aligned_cols=101 Identities=13% Similarity=0.086 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCC--CChhhHHHHHHHHHHcCCHhHHHHHHHHHHHC----CCCCChHHHH
Q 047178 146 TCGQLIRALDMDHRAEEAHKFWEKRIGIDLHS--VPWQLCKSMIAIYYRNNMLERLIKLFKGLEAF----DRKPPEKSIV 219 (287)
Q Consensus 146 TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~s--v~~~tyNsmIsgY~k~G~~eeA~~Lf~eM~~~----Gi~PD~~~Ty 219 (287)
.|+.-++. .+.|++.+|+..|..-....-.+ .++ .+=-|=..|...|++++|-..|..+... ---||. +
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~n-A~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApda---l 218 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPN-AYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDA---L 218 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccch-hHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHH---H
Confidence 48888875 47888999999999998754211 011 2223788999999999999999999763 234553 3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhHHHhhhhc
Q 047178 220 QRVADAYEVLGLLEEKERVLEKYKDLFTEKEK 251 (287)
Q Consensus 220 ~sLI~a~~k~G~leeA~~ll~~m~~l~~~~~~ 251 (287)
--|-.....+|+.++|...+.+...-|=+...
T Consensus 219 lKlg~~~~~l~~~d~A~atl~qv~k~YP~t~a 250 (262)
T COG1729 219 LKLGVSLGRLGNTDEACATLQQVIKRYPGTDA 250 (262)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHH
Confidence 45666788999999999999988777765543
No 179
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=76.90 E-value=0.65 Score=37.95 Aligned_cols=85 Identities=19% Similarity=0.283 Sum_probs=63.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChHHHHHHHHHHHHh
Q 047178 149 QLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNNMLERLIKLFKGLEAFDRKPPEKSIVQRVADAYEV 228 (287)
Q Consensus 149 aLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k 228 (287)
.+|..|-+.+..+.+..+++.+...+.. .+....|.++..|++.+..+++.++++. ...+.+ ..+++.|.+
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~-~~~~~~~~L~~ly~~~~~~~~l~~~L~~--~~~yd~------~~~~~~c~~ 82 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKE-NNPDLHTLLLELYIKYDPYEKLLEFLKT--SNNYDL------DKALRLCEK 82 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC--SHHHHHHHHHHHHCTTTCCHHHHTTTS--SSSS-C------THHHHHHHT
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccc-cCHHHHHHHHHHHHhcCCchHHHHHccc--ccccCH------HHHHHHHHh
Confidence 4577777788888888889988865532 3445789999999999999999999982 122333 456788899
Q ss_pred cCCHHHHHHHHHHH
Q 047178 229 LGLLEEKERVLEKY 242 (287)
Q Consensus 229 ~G~leeA~~ll~~m 242 (287)
.|.++++.-++.++
T Consensus 83 ~~l~~~a~~Ly~~~ 96 (143)
T PF00637_consen 83 HGLYEEAVYLYSKL 96 (143)
T ss_dssp TTSHHHHHHHHHCC
T ss_pred cchHHHHHHHHHHc
Confidence 99999998887653
No 180
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=76.81 E-value=2.7 Score=35.69 Aligned_cols=33 Identities=6% Similarity=0.039 Sum_probs=24.7
Q ss_pred HHcCCHhHHHHHHHHHHHCCCCCChHHHHHHHHHHH
Q 047178 191 YRNNMLERLIKLFKGLEAFDRKPPEKSIVQRVADAY 226 (287)
Q Consensus 191 ~k~G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~ 226 (287)
-..|.-.+|..+|..|.++|-.||+ ++.|+..+
T Consensus 106 R~ygsk~DaY~VF~kML~~G~pPdd---W~~Ll~~a 138 (140)
T PF11663_consen 106 RAYGSKTDAYAVFRKMLERGNPPDD---WDALLKEA 138 (140)
T ss_pred hhhccCCcHHHHHHHHHhCCCCCcc---HHHHHHHh
Confidence 4456667788888888888888886 78877654
No 181
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.70 E-value=85 Score=32.88 Aligned_cols=125 Identities=14% Similarity=0.146 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHccchhhHHHHHH--------HHHHCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhhhC---CC-CCC
Q 047178 111 SLKKALLALEKEQQWHRVVQVIK--------WMLSKGQGSTMGTCGQLIRALDMDHRAEEAHKFWEKRIGI---DL-HSV 178 (287)
Q Consensus 111 s~~~ai~~L~k~~~~~~A~qv~~--------~M~~~G~~pd~~TYnaLI~~y~K~G~leeA~~lF~eM~~~---g~-~sv 178 (287)
.....+......|.|+.|++++. ...+.+..|- +-.+++..|.+.+.-+-|-.++++-..- .. .+.
T Consensus 378 v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~--~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~ 455 (652)
T KOG2376|consen 378 VLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPG--TVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSI 455 (652)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChh--HHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccch
Confidence 34445556778999999999988 5555566564 5677888899999988888888876531 00 000
Q ss_pred C-hhhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChHHHHHHHHHHHHhcCCHHHHHHHHH
Q 047178 179 P-WQLCKSMIAIYYRNNMLERLIKLFKGLEAFDRKPPEKSIVQRVADAYEVLGLLEEKERVLE 240 (287)
Q Consensus 179 ~-~~tyNsmIsgY~k~G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~G~leeA~~ll~ 240 (287)
. ..+|--...-=-++|+.++|..+++++.... .+| .-+..-++.+|++.. .+.|+.+-.
T Consensus 456 ~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n-~~d-~~~l~~lV~a~~~~d-~eka~~l~k 515 (652)
T KOG2376|consen 456 ALLSLMREAAEFKLRHGNEEEASSLLEELVKFN-PND-TDLLVQLVTAYARLD-PEKAESLSK 515 (652)
T ss_pred HHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC-Cch-HHHHHHHHHHHHhcC-HHHHHHHhh
Confidence 0 1234444455568899999999999999853 345 577888999999874 566665543
No 182
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=76.11 E-value=6.2 Score=24.60 Aligned_cols=25 Identities=28% Similarity=0.288 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHh
Q 047178 146 TCGQLIRALDMDHRAEEAHKFWEKR 170 (287)
Q Consensus 146 TYnaLI~~y~K~G~leeA~~lF~eM 170 (287)
+++.|-..|...|+.++|+.++++.
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~a 28 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEA 28 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHH
Confidence 4555555555555666555555554
No 183
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=76.03 E-value=15 Score=39.81 Aligned_cols=125 Identities=16% Similarity=0.233 Sum_probs=91.4
Q ss_pred HHHHHHccchhhHHHHHHHHHHCCCCCChhHHHHHHHHH--HHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHc
Q 047178 116 LLALEKEQQWHRVVQVIKWMLSKGQGSTMGTCGQLIRAL--DMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRN 193 (287)
Q Consensus 116 i~~L~k~~~~~~A~qv~~~M~~~G~~pd~~TYnaLI~~y--~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~ 193 (287)
|-.+-..+++.+|++....+.++ .|+ ..|...+.+| .+.|+.++|..+++.....+. .+..|-.++-..|-..
T Consensus 16 i~d~ld~~qfkkal~~~~kllkk--~Pn-~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~--~D~~tLq~l~~~y~d~ 90 (932)
T KOG2053|consen 16 IYDLLDSSQFKKALAKLGKLLKK--HPN-ALYAKVLKALSLFRLGKGDEALKLLEALYGLKG--TDDLTLQFLQNVYRDL 90 (932)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHH--CCC-cHHHHHHHHHHHHHhcCchhHHHHHhhhccCCC--CchHHHHHHHHHHHHH
Confidence 33445668899999888887665 355 3566666665 589999999999988765443 3667899999999999
Q ss_pred CCHhHHHHHHHHHHHCCCCCChHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHHhhhhc
Q 047178 194 NMLERLIKLFKGLEAFDRKPPEKSIVQRVADAYEVLGLLEEKERVLEKYKDLFTEKEK 251 (287)
Q Consensus 194 G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~G~leeA~~ll~~m~~l~~~~~~ 251 (287)
|+.|+|+.+++.-. +.-|.+ --..-+-.+|.+.+++.+-.++- ..+|..+.+
T Consensus 91 ~~~d~~~~~Ye~~~--~~~P~e-ell~~lFmayvR~~~yk~qQkaa---~~LyK~~pk 142 (932)
T KOG2053|consen 91 GKLDEAVHLYERAN--QKYPSE-ELLYHLFMAYVREKSYKKQQKAA---LQLYKNFPK 142 (932)
T ss_pred hhhhHHHHHHHHHH--hhCCcH-HHHHHHHHHHHHHHHHHHHHHHH---HHHHHhCCc
Confidence 99999999999855 445765 44556666888888887666543 455555544
No 184
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=75.05 E-value=6.7 Score=24.73 Aligned_cols=23 Identities=17% Similarity=0.336 Sum_probs=12.1
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHH
Q 047178 183 CKSMIAIYYRNNMLERLIKLFKG 205 (287)
Q Consensus 183 yNsmIsgY~k~G~~eeA~~Lf~e 205 (287)
|+.|=..|.+.|++++|+++|++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 44455555555555555555555
No 185
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=74.80 E-value=1.3e+02 Score=32.37 Aligned_cols=127 Identities=13% Similarity=0.046 Sum_probs=88.9
Q ss_pred HHHHHHHHHHHccchhhHHHHHHHHHHCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhhhC-----------------
Q 047178 111 SLKKALLALEKEQQWHRVVQVIKWMLSKGQGSTMGTCGQLIRALDMDHRAEEAHKFWEKRIGI----------------- 173 (287)
Q Consensus 111 s~~~ai~~L~k~~~~~~A~qv~~~M~~~G~~pd~~TYnaLI~~y~K~G~leeA~~lF~eM~~~----------------- 173 (287)
-+..++.......++++|..+|..-.. ..|+..+|.-=++..--.|.+++|.+++++-.+.
T Consensus 620 iwlaavKle~en~e~eraR~llakar~--~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~ 697 (913)
T KOG0495|consen 620 IWLAAVKLEFENDELERARDLLAKARS--ISGTERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQ 697 (913)
T ss_pred HHHHHHHHhhccccHHHHHHHHHHHhc--cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHH
Confidence 355778888888899999999887554 5577777766666666677788888777653321
Q ss_pred -------------CCCCCCh--hhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChHHHHHHHHHHHHhcCCHHHHHHH
Q 047178 174 -------------DLHSVPW--QLCKSMIAIYYRNNMLERLIKLFKGLEAFDRKPPEKSIVQRVADAYEVLGLLEEKERV 238 (287)
Q Consensus 174 -------------g~~sv~~--~tyNsmIsgY~k~G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~G~leeA~~l 238 (287)
|+...|. -.|=.|-..=-+.|.+-+|..+|+.-.-.+ |+....|-..|..=.++|..+.|+.+
T Consensus 698 ~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN--Pk~~~lwle~Ir~ElR~gn~~~a~~l 775 (913)
T KOG0495|consen 698 MENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN--PKNALLWLESIRMELRAGNKEQAELL 775 (913)
T ss_pred HHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC--CCcchhHHHHHHHHHHcCCHHHHHHH
Confidence 2211221 136556565667778888888887766554 54457788899999999999999988
Q ss_pred HHH
Q 047178 239 LEK 241 (287)
Q Consensus 239 l~~ 241 (287)
+.+
T Consensus 776 mak 778 (913)
T KOG0495|consen 776 MAK 778 (913)
T ss_pred HHH
Confidence 764
No 186
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=74.35 E-value=31 Score=29.98 Aligned_cols=106 Identities=5% Similarity=-0.066 Sum_probs=57.9
Q ss_pred HHccchhhHHHHHHHHHHCCCCCCh---hHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHcCCH
Q 047178 120 EKEQQWHRVVQVIKWMLSKGQGSTM---GTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNNML 196 (287)
Q Consensus 120 ~k~~~~~~A~qv~~~M~~~G~~pd~---~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~G~~ 196 (287)
.+.+...++..++.-|.- +.|.. .+|-.+| +...|++++|..+|+++.+.... .-|-.-+-++|-...-
T Consensus 21 l~~~~~~D~e~lL~ALrv--LRP~~~e~~~~~~~l--~i~r~~w~dA~rlLr~l~~~~~~----~p~~kALlA~CL~~~~ 92 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRV--LRPEFPELDLFDGWL--HIVRGDWDDALRLLRELEERAPG----FPYAKALLALCLYALG 92 (160)
T ss_pred HccCChHHHHHHHHHHHH--hCCCchHHHHHHHHH--HHHhCCHHHHHHHHHHHhccCCC----ChHHHHHHHHHHHHcC
Confidence 445566677677766643 33443 3344443 35678888888888887665421 1255555566655555
Q ss_pred hHHHHHHHH-HHHCCCCCChHHHHHHHHHHHHhcCCHHHHHH
Q 047178 197 ERLIKLFKG-LEAFDRKPPEKSIVQRVADAYEVLGLLEEKER 237 (287)
Q Consensus 197 eeA~~Lf~e-M~~~Gi~PD~~~Ty~sLI~a~~k~G~leeA~~ 237 (287)
|-....+.+ +.+.|--||. ..|+..+-.......|..
T Consensus 93 D~~Wr~~A~evle~~~d~~a----~~Lv~~Ll~~~~~~~a~~ 130 (160)
T PF09613_consen 93 DPSWRRYADEVLESGADPDA----RALVRALLARADLEPAHE 130 (160)
T ss_pred ChHHHHHHHHHHhcCCChHH----HHHHHHHHHhccccchhh
Confidence 555555544 5555555553 345555544444444443
No 187
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=74.06 E-value=68 Score=28.99 Aligned_cols=113 Identities=18% Similarity=0.089 Sum_probs=66.9
Q ss_pred hhHHHHHHHHHHCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCC--hhhHHHHHH-HHHHcCC--HhHHH
Q 047178 126 HRVVQVIKWMLSKGQGSTMGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVP--WQLCKSMIA-IYYRNNM--LERLI 200 (287)
Q Consensus 126 ~~A~qv~~~M~~~G~~pd~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~--~~tyNsmIs-gY~k~G~--~eeA~ 200 (287)
++++++..++ +-++...-.....|++++|..-.+++.+.- ..+- .-.|+.+.. |||.+++ +.+|.
T Consensus 20 EE~l~lsRei---------~r~s~~aI~~~H~~~~eeA~~~l~~a~~~v-~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~ 89 (204)
T COG2178 20 EEALKLSREI---------VRLSGEAIFLLHRGDFEEAEKKLKKASEAV-EKLKRLLAGFPELYFAGFVTTALQEYVEAT 89 (204)
T ss_pred HHHHHHHHHH---------HHHHHHHHHHHHhccHHHHHHHHHHHHHHH-HHHHHHHhhhHHHHHHHhhcchHHHHHHHH
Confidence 4556655554 335555555666788888888877775310 0000 012566665 8888886 55777
Q ss_pred HHHHHHHHC--------CCCCChHHHHHHHHHHH----------HhcCCHHHHHHHHHHHhHHHhhhh
Q 047178 201 KLFKGLEAF--------DRKPPEKSIVQRVADAY----------EVLGLLEEKERVLEKYKDLFTEKE 250 (287)
Q Consensus 201 ~Lf~eM~~~--------Gi~PD~~~Ty~sLI~a~----------~k~G~leeA~~ll~~m~~l~~~~~ 250 (287)
-+|.-.... |+.| ....+-+.++- .+.|+++.|++.++-|..+|....
T Consensus 90 ~l~~~l~~~~~ps~~EL~V~~--~~YilGl~D~vGELrR~~le~l~~~~~~~Ae~~~~~ME~lY~~Lm 155 (204)
T COG2178 90 LLYSILKDGRLPSPEELGVPP--IAYILGLADAVGELRRHVLELLRKGSFEEAERFLKFMEKLYEELM 155 (204)
T ss_pred HHHHHHhcCCCCCHHHcCCCH--HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 777655432 3322 12223333322 245899999999999999987654
No 188
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=73.87 E-value=15 Score=37.52 Aligned_cols=103 Identities=16% Similarity=0.087 Sum_probs=71.8
Q ss_pred HHHHccchhhHHHHHHHHHHCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCCh-hhHHHHHHHHHHcCCH
Q 047178 118 ALEKEQQWHRVVQVIKWMLSKGQGSTMGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPW-QLCKSMIAIYYRNNML 196 (287)
Q Consensus 118 ~L~k~~~~~~A~qv~~~M~~~G~~pd~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~-~tyNsmIsgY~k~G~~ 196 (287)
..+..|+++.|+.+|-.-+... ++|.+-|+-=..+|++.|++++|.+=-.+-.+ +. |+| --|+-.=.++.-.|++
T Consensus 11 aa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~--l~-p~w~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 11 AAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRR--LN-PDWAKGYSRKGAALFGLGDY 86 (539)
T ss_pred hhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHh--cC-CchhhHHHHhHHHHHhcccH
Confidence 3566788999998887755432 24778898899999999999998875555443 32 455 3588888888888899
Q ss_pred hHHHHHHHHHHHCCCCCChHHHHHHHHHHH
Q 047178 197 ERLIKLFKGLEAFDRKPPEKSIVQRVADAY 226 (287)
Q Consensus 197 eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~ 226 (287)
++|+.-|.+=.+ ..|+....++-+.+++
T Consensus 87 ~eA~~ay~~GL~--~d~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 87 EEAILAYSEGLE--KDPSNKQLKTGLAQAY 114 (539)
T ss_pred HHHHHHHHHHhh--cCCchHHHHHhHHHhh
Confidence 999998875332 3455445555555544
No 189
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=73.28 E-value=10 Score=23.48 Aligned_cols=32 Identities=28% Similarity=0.391 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhHHHhh
Q 047178 217 SIVQRVADAYEVLGLLEEKERVLEKYKDLFTE 248 (287)
Q Consensus 217 ~Ty~sLI~a~~k~G~leeA~~ll~~m~~l~~~ 248 (287)
.+++.|-..|...|++++|+.++++...+...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 34 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEIRER 34 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHHHHH
Confidence 34566666666666666666666665555443
No 190
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.18 E-value=55 Score=36.63 Aligned_cols=85 Identities=20% Similarity=0.110 Sum_probs=61.7
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChHHHHHHHHH
Q 047178 145 GTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNNMLERLIKLFKGLEAFDRKPPEKSIVQRVAD 224 (287)
Q Consensus 145 ~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~ 224 (287)
.+|+.|-.+--..|++.+|.+-|-+-. +...|--+|....+.|.+|+.+..+..-....-.|. +- +.||-
T Consensus 1105 ~vWsqlakAQL~~~~v~dAieSyikad-------Dps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~-id--~eLi~ 1174 (1666)
T KOG0985|consen 1105 AVWSQLAKAQLQGGLVKDAIESYIKAD-------DPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPY-ID--SELIF 1174 (1666)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHhcC-------CcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCcc-ch--HHHHH
Confidence 467777777777788888877664431 113488888888899999888888766566666776 23 67888
Q ss_pred HHHhcCCHHHHHHHH
Q 047178 225 AYEVLGLLEEKERVL 239 (287)
Q Consensus 225 a~~k~G~leeA~~ll 239 (287)
||++.+++.+-+++.
T Consensus 1175 AyAkt~rl~elE~fi 1189 (1666)
T KOG0985|consen 1175 AYAKTNRLTELEEFI 1189 (1666)
T ss_pred HHHHhchHHHHHHHh
Confidence 888888887777654
No 191
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=72.79 E-value=74 Score=32.47 Aligned_cols=123 Identities=8% Similarity=0.103 Sum_probs=79.5
Q ss_pred HHHccchhhHHHHHHHHHHCCCC-CC----hhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHH--HH
Q 047178 119 LEKEQQWHRVVQVIKWMLSKGQG-ST----MGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAI--YY 191 (287)
Q Consensus 119 L~k~~~~~~A~qv~~~M~~~G~~-pd----~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsg--Y~ 191 (287)
|.+.+.+.++..+|....+.--. |. -+..+-+|++|--+. +|..+....+....... -+ |=.+..+ ..
T Consensus 16 Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~n-ld~Me~~l~~l~~~~~~-s~---~l~LF~~L~~Y 90 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNN-LDLMEKQLMELRQQFGK-SA---YLPLFKALVAY 90 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhh-HHHHHHHHHHHHHhcCC-ch---HHHHHHHHHHH
Confidence 57788888888888877653221 11 234577889988654 56665555555443222 23 3333333 25
Q ss_pred HcCCHhHHHHHHHHHHHC--CCCC-----------ChHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHH
Q 047178 192 RNNMLERLIKLFKGLEAF--DRKP-----------PEKSIVQRVADAYEVLGLLEEKERVLEKYKDLF 246 (287)
Q Consensus 192 k~G~~eeA~~Lf~eM~~~--Gi~P-----------D~~~Ty~sLI~a~~k~G~leeA~~ll~~m~~l~ 246 (287)
+.+.+++|++.|..-.+. +-.| ++.+.=++.++++...|++.+|+.+++++.+-+
T Consensus 91 ~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~l 158 (549)
T PF07079_consen 91 KQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERL 158 (549)
T ss_pred HhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Confidence 888999999998877655 4332 112333677788999999999999998876654
No 192
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=72.17 E-value=47 Score=34.45 Aligned_cols=117 Identities=11% Similarity=0.024 Sum_probs=86.7
Q ss_pred HHHHHHHHH-HCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHcCCHhHHHHHHHHH
Q 047178 128 VVQVIKWML-SKGQGSTMGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNNMLERLIKLFKGL 206 (287)
Q Consensus 128 A~qv~~~M~-~~G~~pd~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~G~~eeA~~Lf~eM 206 (287)
+.++|-.+. ..+...|.-+++.|==-|--.|.++.|..-|+...... |.+-.+||-|=..++...+.++|+.-|.+-
T Consensus 413 i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~--Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rA 490 (579)
T KOG1125|consen 413 IQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVK--PNDYLLWNRLGATLANGNRSEEAISAYNRA 490 (579)
T ss_pred HHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcC--CchHHHHHHhhHHhcCCcccHHHHHHHHHH
Confidence 344444443 34544566667777666778899999999999887643 233468999999999999999999999987
Q ss_pred HHCCCCCChH-HHHHHHHHHHHhcCCHHHHHHHHHHHhHHHhhh
Q 047178 207 EAFDRKPPEK-SIVQRVADAYEVLGLLEEKERVLEKYKDLFTEK 249 (287)
Q Consensus 207 ~~~Gi~PD~~-~Ty~sLI~a~~k~G~leeA~~ll~~m~~l~~~~ 249 (287)
.+ ++|.=+ +-||.=| +|...|.+++|...|-+...+.-.-
T Consensus 491 Lq--LqP~yVR~RyNlgI-S~mNlG~ykEA~~hlL~AL~mq~ks 531 (579)
T KOG1125|consen 491 LQ--LQPGYVRVRYNLGI-SCMNLGAYKEAVKHLLEALSMQRKS 531 (579)
T ss_pred Hh--cCCCeeeeehhhhh-hhhhhhhHHHHHHHHHHHHHhhhcc
Confidence 65 566511 3477777 7999999999999887777776543
No 193
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=71.94 E-value=16 Score=38.82 Aligned_cols=81 Identities=12% Similarity=0.046 Sum_probs=62.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChHHHHHHHHHHHH
Q 047178 148 GQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNNMLERLIKLFKGLEAFDRKPPEKSIVQRVADAYE 227 (287)
Q Consensus 148 naLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~ 227 (287)
-.+-..|...|-+.+|..+|++.. .|--.|-+|+..|+.++|.++...-.+ -.|| ...|..+.+..-
T Consensus 402 ~~laell~slGitksAl~I~Erle----------mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d-~~lyc~LGDv~~ 468 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFERLE----------MWDPVILCYLLLGQHGKAEEINRQELE--KDPD-PRLYCLLGDVLH 468 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHhHH----------HHHHHHHHHHHhcccchHHHHHHHHhc--CCCc-chhHHHhhhhcc
Confidence 346777889999999999999863 377789999999999999999988776 3566 477777776666
Q ss_pred hcCCHHHHHHHHHH
Q 047178 228 VLGLLEEKERVLEK 241 (287)
Q Consensus 228 k~G~leeA~~ll~~ 241 (287)
...-.++|-++.+.
T Consensus 469 d~s~yEkawElsn~ 482 (777)
T KOG1128|consen 469 DPSLYEKAWELSNY 482 (777)
T ss_pred ChHHHHHHHHHhhh
Confidence 66666666666554
No 194
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=71.48 E-value=7.9 Score=24.39 Aligned_cols=26 Identities=19% Similarity=0.284 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhh
Q 047178 146 TCGQLIRALDMDHRAEEAHKFWEKRI 171 (287)
Q Consensus 146 TYnaLI~~y~K~G~leeA~~lF~eM~ 171 (287)
+|+.|=+.|.+.|+.++|.++|++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 57788899999999999999999843
No 195
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=71.12 E-value=80 Score=32.91 Aligned_cols=97 Identities=14% Similarity=0.149 Sum_probs=73.8
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHcCCHhHHHHHHH-HHHHCCCCCChHHHHHHHH
Q 047178 145 GTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNNMLERLIKLFK-GLEAFDRKPPEKSIVQRVA 223 (287)
Q Consensus 145 ~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~G~~eeA~~Lf~-eM~~~Gi~PD~~~Ty~sLI 223 (287)
.+|-.+|+.--|..-+..|+.+|.+..+....+-.++.+++||.-||. +..+-|+++|+ .|...| |+......-+
T Consensus 367 Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkkf~---d~p~yv~~Yl 442 (656)
T KOG1914|consen 367 LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKKFG---DSPEYVLKYL 442 (656)
T ss_pred eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHhcC---CChHHHHHHH
Confidence 578899999999999999999999998755432234679999998885 56788999997 344444 4334457778
Q ss_pred HHHHhcCCHHHHHHHHHHHhHH
Q 047178 224 DAYEVLGLLEEKERVLEKYKDL 245 (287)
Q Consensus 224 ~a~~k~G~leeA~~ll~~m~~l 245 (287)
+-+...|+-..++.||+...+.
T Consensus 443 dfL~~lNdd~N~R~LFEr~l~s 464 (656)
T KOG1914|consen 443 DFLSHLNDDNNARALFERVLTS 464 (656)
T ss_pred HHHHHhCcchhHHHHHHHHHhc
Confidence 8888889888888888865443
No 196
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=70.60 E-value=37 Score=29.33 Aligned_cols=85 Identities=8% Similarity=-0.012 Sum_probs=42.1
Q ss_pred ccchhhHHHHHHHHHHCCCCCC---hhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHcCCHhH
Q 047178 122 EQQWHRVVQVIKWMLSKGQGST---MGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNNMLER 198 (287)
Q Consensus 122 ~~~~~~A~qv~~~M~~~G~~pd---~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~G~~ee 198 (287)
.....++..+++-|.- +.|+ +.+|-..| +...|+++||.++|++..+.+.. .| |..-+-++|-...-|-
T Consensus 23 ~~d~~D~e~lLdALrv--LrP~~~e~d~~dg~l--~i~rg~w~eA~rvlr~l~~~~~~-~p---~~kAL~A~CL~al~Dp 94 (153)
T TIGR02561 23 SADPYDAQAMLDALRV--LRPNLKELDMFDGWL--LIARGNYDEAARILRELLSSAGA-PP---YGKALLALCLNAKGDA 94 (153)
T ss_pred cCCHHHHHHHHHHHHH--hCCCccccchhHHHH--HHHcCCHHHHHHHHHhhhccCCC-ch---HHHHHHHHHHHhcCCh
Confidence 4455555556655542 2333 23333333 24556667777776666654422 12 5555666665555554
Q ss_pred HHHHHH-HHHHCCCCCC
Q 047178 199 LIKLFK-GLEAFDRKPP 214 (287)
Q Consensus 199 A~~Lf~-eM~~~Gi~PD 214 (287)
...... ++.+.|-.||
T Consensus 95 ~Wr~~A~~~le~~~~~~ 111 (153)
T TIGR02561 95 EWHVHADEVLARDADAD 111 (153)
T ss_pred HHHHHHHHHHHhCCCHh
Confidence 444333 3334444443
No 197
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=70.45 E-value=26 Score=27.60 Aligned_cols=65 Identities=11% Similarity=-0.059 Sum_probs=34.3
Q ss_pred HHHHHHHhhhCCCCCCChhhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChHHHHHHHHHHHHhcCCHHHH
Q 047178 163 AHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNNMLERLIKLFKGLEAFDRKPPEKSIVQRVADAYEVLGLLEEK 235 (287)
Q Consensus 163 A~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~G~leeA 235 (287)
+.++++.+.++|+. +.-..+.+..+--..|+.+.|.+|+..++ .| |+. |...++++...|.-+-|
T Consensus 21 ~~~v~d~ll~~~il--T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg--~~a---F~~Fl~aLreT~~~~LA 85 (88)
T cd08819 21 TRDVCDKCLEQGLL--TEEDRNRIEAATENHGNESGARELLKRIV-QK--EGW---FSKFLQALRETEHHELA 85 (88)
T ss_pred HHHHHHHHHhcCCC--CHHHHHHHHHhccccCcHHHHHHHHHHhc-cC--CcH---HHHHHHHHHHcCchhhh
Confidence 44566666666652 21123333322224466677777776666 33 553 56666666666654444
No 198
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=69.89 E-value=5.4 Score=33.90 Aligned_cols=30 Identities=7% Similarity=-0.026 Sum_probs=14.5
Q ss_pred HcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHH
Q 047178 156 MDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIA 188 (287)
Q Consensus 156 K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIs 188 (287)
+.|.-.+|..+|.+|.+.|-. |+ .|+.|+.
T Consensus 107 ~ygsk~DaY~VF~kML~~G~p-Pd--dW~~Ll~ 136 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNP-PD--DWDALLK 136 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCC-Cc--cHHHHHH
Confidence 334444555555555555542 22 2555554
No 199
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=69.75 E-value=82 Score=28.63 Aligned_cols=52 Identities=12% Similarity=0.107 Sum_probs=24.8
Q ss_pred HccchhhHHHHHHHHHHCCCCCChhHHH---HHHHHHHHcCCHHHHHHHHHHhhhC
Q 047178 121 KEQQWHRVVQVIKWMLSKGQGSTMGTCG---QLIRALDMDHRAEEAHKFWEKRIGI 173 (287)
Q Consensus 121 k~~~~~~A~qv~~~M~~~G~~pd~~TYn---aLI~~y~K~G~leeA~~lF~eM~~~ 173 (287)
..|++++|++.|+.....--.+ ..+.. -|..+|-+.|+.++|...|++....
T Consensus 44 ~~g~y~~Ai~~f~~l~~~yP~s-~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 44 QDGNWKQAITQLEALDNRYPFG-PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred HCCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 3455666666665555422111 11111 2334455566666666666655543
No 200
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=68.98 E-value=54 Score=31.26 Aligned_cols=62 Identities=15% Similarity=0.141 Sum_probs=34.8
Q ss_pred CCCChhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHcCCHhHHHH
Q 047178 140 QGSTMGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNNMLERLIK 201 (287)
Q Consensus 140 ~~pd~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~G~~eeA~~ 201 (287)
-.++..+--.+|+.+++.+....-.++|+.-........+..-|...|......|..+-...
T Consensus 198 ~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~k 259 (292)
T PF13929_consen 198 KSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRK 259 (292)
T ss_pred cCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHH
Confidence 34555556666677777777776666666654331111222346667777777776544333
No 201
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=68.89 E-value=73 Score=27.14 Aligned_cols=73 Identities=10% Similarity=-0.019 Sum_probs=43.2
Q ss_pred HccchhhHHHHHHHHHHCCCCCC---hhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHcCC
Q 047178 121 KEQQWHRVVQVIKWMLSKGQGST---MGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNNM 195 (287)
Q Consensus 121 k~~~~~~A~qv~~~M~~~G~~pd---~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~G~ 195 (287)
+.|.+.+|.+.|+.+..+ +... .-+.=-|+.+|.+.|+.++|...++..++..-. -|.+-|--.+.|++.-..
T Consensus 22 ~~~~Y~~A~~~le~L~~r-yP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~-hp~vdYa~Y~~gL~~~~~ 97 (142)
T PF13512_consen 22 QKGNYEEAIKQLEALDTR-YPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPT-HPNVDYAYYMRGLSYYEQ 97 (142)
T ss_pred HhCCHHHHHHHHHHHHhc-CCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CCCccHHHHHHHHHHHHH
Confidence 457777887777776554 2221 123445777777888888888777777654321 123446656666654433
No 202
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=68.53 E-value=18 Score=23.65 Aligned_cols=26 Identities=15% Similarity=0.148 Sum_probs=14.6
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHH
Q 047178 183 CKSMIAIYYRNNMLERLIKLFKGLEA 208 (287)
Q Consensus 183 yNsmIsgY~k~G~~eeA~~Lf~eM~~ 208 (287)
|..+=..|.+.|++++|.++|++..+
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~ 29 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALA 29 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44445555555666666666655554
No 203
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=67.18 E-value=18 Score=36.97 Aligned_cols=58 Identities=21% Similarity=0.226 Sum_probs=42.3
Q ss_pred HHHHHcCCHhHHHHHHHHHHHCCCCCChHHHHHHHHHHHHhcCCHHHHHHHHHHHhHH
Q 047178 188 AIYYRNNMLERLIKLFKGLEAFDRKPPEKSIVQRVADAYEVLGLLEEKERVLEKYKDL 245 (287)
Q Consensus 188 sgY~k~G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~G~leeA~~ll~~m~~l 245 (287)
.+.-+.|+.+||++.|.+|.+.--.-|.....-.||.++-..+...++..++.+|.++
T Consensus 267 mCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi 324 (539)
T PF04184_consen 267 MCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDI 324 (539)
T ss_pred HHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccc
Confidence 3445779999999999998754211122334567888999999999999999888764
No 204
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=65.33 E-value=93 Score=29.85 Aligned_cols=127 Identities=13% Similarity=0.056 Sum_probs=76.5
Q ss_pred HHHHHHccchhhHHHHHHHHHHCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHH-----HH
Q 047178 116 LLALEKEQQWHRVVQVIKWMLSKGQGSTMGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIA-----IY 190 (287)
Q Consensus 116 i~~L~k~~~~~~A~qv~~~M~~~G~~pd~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIs-----gY 190 (287)
+..+--.+.+.-.+.+++..+++.-.-+.+.-..|...-...|+++-|...|+...+.... .+..+++.|+. .|
T Consensus 184 ~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~k-L~~~q~~~~V~~n~a~i~ 262 (366)
T KOG2796|consen 184 ANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQK-LDGLQGKIMVLMNSAFLH 262 (366)
T ss_pred HHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhh-hhccchhHHHHhhhhhhe
Confidence 3334444455555666677666554556666666666667899999999999976542211 33334555543 34
Q ss_pred HHcCCHhHHHHHHHHHHHCCCCCChHHHHHHHHHHHHhcCCHHHHHHHHHHHhHH
Q 047178 191 YRNNMLERLIKLFKGLEAFDRKPPEKSIVQRVADAYEVLGLLEEKERVLEKYKDL 245 (287)
Q Consensus 191 ~k~G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~G~leeA~~ll~~m~~l 245 (287)
.-..++.+|...|.+....+-. | ++..|.=.-..--.|++.+|.+.++.|.+.
T Consensus 263 lg~nn~a~a~r~~~~i~~~D~~-~-~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 263 LGQNNFAEAHRFFTEILRMDPR-N-AVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred ecccchHHHHHHHhhccccCCC-c-hhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4556778888888877665422 2 222232222333478888888888866543
No 205
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=65.16 E-value=22 Score=34.59 Aligned_cols=57 Identities=12% Similarity=0.101 Sum_probs=45.1
Q ss_pred HHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCC
Q 047178 154 LDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNNMLERLIKLFKGLEAFDRK 212 (287)
Q Consensus 154 y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~G~~eeA~~Lf~eM~~~Gi~ 212 (287)
+.|.|+.|+|.+-|..-.+-+.. .|-+.||.-+.-| +.|+.+.|+++..++.+.|++
T Consensus 154 lykegqyEaAvqkFqaAlqvsGy-qpllAYniALaHy-~~~qyasALk~iSEIieRG~r 210 (459)
T KOG4340|consen 154 LYKEGQYEAAVQKFQAALQVSGY-QPLLAYNLALAHY-SSRQYASALKHISEIIERGIR 210 (459)
T ss_pred eeccccHHHHHHHHHHHHhhcCC-CchhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhh
Confidence 34899999999999987664432 4667899766554 678999999999999998886
No 206
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=64.18 E-value=94 Score=31.97 Aligned_cols=79 Identities=11% Similarity=0.066 Sum_probs=52.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHhhhCCCCCCCh-hhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCC-hHHHHHHHHHHHH
Q 047178 150 LIRALDMDHRAEEAHKFWEKRIGIDLHSVPW-QLCKSMIAIYYRNNMLERLIKLFKGLEAFDRKPP-EKSIVQRVADAYE 227 (287)
Q Consensus 150 LI~~y~K~G~leeA~~lF~eM~~~g~~sv~~-~tyNsmIsgY~k~G~~eeA~~Lf~eM~~~Gi~PD-~~~Ty~sLI~a~~ 227 (287)
|=.++-|.|+.+||.+.|.+|.+..- ..+. ...-.||.+|--.+.+.+|-.++..-.+-. .|. ....|+..+-.+-
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~p-~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~-lpkSAti~YTaALLkaR 342 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEFP-NLDNLNIRENLIEALLELQAYADVQALLAKYDDIS-LPKSATICYTAALLKAR 342 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhCC-ccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcccc-CCchHHHHHHHHHHHHH
Confidence 44455588999999999999975321 1122 123448999999999999999999864332 233 2355776654444
Q ss_pred hcC
Q 047178 228 VLG 230 (287)
Q Consensus 228 k~G 230 (287)
..|
T Consensus 343 av~ 345 (539)
T PF04184_consen 343 AVG 345 (539)
T ss_pred hhc
Confidence 344
No 207
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=63.73 E-value=48 Score=26.08 Aligned_cols=67 Identities=12% Similarity=0.106 Sum_probs=45.9
Q ss_pred HHHHHHHHHHCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHcCCHhHHHH
Q 047178 128 VVQVIKWMLSKGQGSTMGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNNMLERLIK 201 (287)
Q Consensus 128 A~qv~~~M~~~G~~pd~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~G~~eeA~~ 201 (287)
+-++++.+.++|+- +.--.+-+-.+=...|+-+.|.++...+. +| +.| |...++++...|..+-|.+
T Consensus 21 ~~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg---~~a--F~~Fl~aLreT~~~~LA~e 87 (88)
T cd08819 21 TRDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QK---EGW--FSKFLQALRETEHHELARE 87 (88)
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cC---CcH--HHHHHHHHHHcCchhhhhc
Confidence 34677777777742 22222223332335699999999999998 65 455 8999999999998776654
No 208
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=63.17 E-value=14 Score=24.07 Aligned_cols=29 Identities=21% Similarity=0.301 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhhhCC
Q 047178 146 TCGQLIRALDMDHRAEEAHKFWEKRIGID 174 (287)
Q Consensus 146 TYnaLI~~y~K~G~leeA~~lF~eM~~~g 174 (287)
+|..|-..|...|+.++|+++|++..+.+
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~ 31 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALD 31 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 56778889999999999999999998864
No 209
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=63.17 E-value=22 Score=34.30 Aligned_cols=67 Identities=18% Similarity=0.118 Sum_probs=46.7
Q ss_pred HHHHHHHHHHccCCCCHHHHHHHHHHHHH----------------ccchhhHHHHHHHHHHCCCCCChhHHHHHHHHHHH
Q 047178 93 VYGTLDAWVAWEQNFPVGSLKKALLALEK----------------EQQWHRVVQVIKWMLSKGQGSTMGTCGQLIRALDM 156 (287)
Q Consensus 93 v~~~Ld~~~~~~~~~~~~s~~~ai~~L~k----------------~~~~~~A~qv~~~M~~~G~~pd~~TYnaLI~~y~K 156 (287)
+|.+|..+...+.+-.+..|+.++..+-| -++-..++.|+++|...|+.||-.+--.||++|++
T Consensus 91 Iy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr 170 (406)
T KOG3941|consen 91 IYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGR 170 (406)
T ss_pred HHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcc
Confidence 55666665555555555555544444322 23445778999999999999999999999999998
Q ss_pred cCC
Q 047178 157 DHR 159 (287)
Q Consensus 157 ~G~ 159 (287)
-|.
T Consensus 171 ~~~ 173 (406)
T KOG3941|consen 171 WNF 173 (406)
T ss_pred ccc
Confidence 775
No 210
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=63.05 E-value=1.2e+02 Score=27.67 Aligned_cols=140 Identities=14% Similarity=0.026 Sum_probs=72.2
Q ss_pred CCHHHHHHHHHHHHHccchhhHHHHHHHHHHCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhhhCC--CCCCChhhHH
Q 047178 107 FPVGSLKKALLALEKEQQWHRVVQVIKWMLSKGQGSTMGTCGQLIRALDMDHRAEEAHKFWEKRIGID--LHSVPWQLCK 184 (287)
Q Consensus 107 ~~~~s~~~ai~~L~k~~~~~~A~qv~~~M~~~G~~pd~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g--~~sv~~~tyN 184 (287)
.++..-..+-..+...|+.++|...+.+-..--+..|....-.|-++...-++..+|..+++.+.+-+ ..+++. -=
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~--~L 164 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG--HL 164 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc--hH
Confidence 33444445566666777777777777765543334455444555555566677777777777665432 111111 11
Q ss_pred HHHHHHHHcCCHhHHHHHHHHHHHCCCCCChHHHHHHHHHHHHhcCCHHHHHH----HHHHHhHHHhhhhc
Q 047178 185 SMIAIYYRNNMLERLIKLFKGLEAFDRKPPEKSIVQRVADAYEVLGLLEEKER----VLEKYKDLFTEKEK 251 (287)
Q Consensus 185 smIsgY~k~G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~G~leeA~~----ll~~m~~l~~~~~~ 251 (287)
.+-..|.-.|.+++|..-|+-....---|.....|.-+ +.+.|+.+++.. +++....--.+|+|
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~Y~e~---La~qgr~~ea~aq~~~v~d~~~r~~~H~rk 232 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAISYYPGPQARIYYAEM---LAKQGRLREANAQYVAVVDTAKRSRPHYRK 232 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHhCCCHHHHHHHHHH---HHHhcchhHHHHHHHHHHHHHHhcchhHHH
Confidence 12244556677777777776655432222222333333 345666655553 33333333334544
No 211
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=62.60 E-value=2e+02 Score=29.86 Aligned_cols=30 Identities=13% Similarity=0.031 Sum_probs=15.3
Q ss_pred CCChhHHHHHHHHHHHcCCHHHHHHHHHHh
Q 047178 141 GSTMGTCGQLIRALDMDHRAEEAHKFWEKR 170 (287)
Q Consensus 141 ~pd~~TYnaLI~~y~K~G~leeA~~lF~eM 170 (287)
.||.-.|++.|+.=-+...++.|..+++..
T Consensus 171 ~P~eqaW~sfI~fElRykeieraR~IYerf 200 (677)
T KOG1915|consen 171 EPDEQAWLSFIKFELRYKEIERARSIYERF 200 (677)
T ss_pred CCcHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 355555555555555555555555555544
No 212
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=61.62 E-value=1.8e+02 Score=29.02 Aligned_cols=133 Identities=14% Similarity=0.018 Sum_probs=75.0
Q ss_pred HHHHHHHHccCCCcchHH-HHHHHHHHccCCCCHHHHHHHHHHHHHccchhhHHHHHHHHHHCCCCCChhHHHHHHHHHH
Q 047178 77 NFLVNTLLDLKNSKEDVY-GTLDAWVAWEQNFPVGSLKKALLALEKEQQWHRVVQVIKWMLSKGQGSTMGTCGQLIRALD 155 (287)
Q Consensus 77 ~~Li~~l~~lg~~~~~v~-~~Ld~~~~~~~~~~~~s~~~ai~~L~k~~~~~~A~qv~~~M~~~G~~pd~~TYnaLI~~y~ 155 (287)
+.+...+.++..-...-- ..+..+-.++ +-+...+..+...-...|+.+.+-..+.+..+.--.++...+=+.-.-+.
T Consensus 86 ~~~~egl~~l~eG~~~qAEkl~~rnae~~-e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll 164 (400)
T COG3071 86 KALNEGLLKLFEGDFQQAEKLLRRNAEHG-EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLL 164 (400)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhhhcC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHH
Confidence 447777777744332211 1223333333 33456666666666777777777776666655433455555656666666
Q ss_pred HcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCC
Q 047178 156 MDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNNMLERLIKLFKGLEAFDRK 212 (287)
Q Consensus 156 K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~G~~eeA~~Lf~eM~~~Gi~ 212 (287)
-.|+.+.|..-.++..+.+- -+...-..+..+|.+.|.+.++..++..|.+.|+-
T Consensus 165 ~~~d~~aA~~~v~~ll~~~p--r~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l 219 (400)
T COG3071 165 NRRDYPAARENVDQLLEMTP--RHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLL 219 (400)
T ss_pred hCCCchhHHHHHHHHHHhCc--CChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCC
Confidence 66666666666665554331 12234566666666666666666666666655544
No 213
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=61.58 E-value=49 Score=28.69 Aligned_cols=96 Identities=14% Similarity=0.046 Sum_probs=62.3
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCCh--hhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChHHHHH--
Q 047178 145 GTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPW--QLCKSMIAIYYRNNMLERLIKLFKGLEAFDRKPPEKSIVQ-- 220 (287)
Q Consensus 145 ~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~--~tyNsmIsgY~k~G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~-- 220 (287)
..+..+-+-|++.|++++|.+.|.++.+... ++.. -+|=.+|....-.|++..+.....+....--.+++-..-|
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~-~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrl 115 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCT-SPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRL 115 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcC-CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 4788999999999999999999999887643 2221 2466678888888899888888776654332222212222
Q ss_pred HHHHHHH--hcCCHHHHHHHHHH
Q 047178 221 RVADAYE--VLGLLEEKERVLEK 241 (287)
Q Consensus 221 sLI~a~~--k~G~leeA~~ll~~ 241 (287)
.+..|+. ..+++.+|-++|-.
T Consensus 116 k~~~gL~~l~~r~f~~AA~~fl~ 138 (177)
T PF10602_consen 116 KVYEGLANLAQRDFKEAAELFLD 138 (177)
T ss_pred HHHHHHHHHHhchHHHHHHHHHc
Confidence 2333322 24566666666644
No 214
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=60.72 E-value=1.1e+02 Score=26.45 Aligned_cols=88 Identities=11% Similarity=0.066 Sum_probs=63.5
Q ss_pred HHHHHccchhhHHHHHHHHHHCCCCCChhH-HHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHcCC
Q 047178 117 LALEKEQQWHRVVQVIKWMLSKGQGSTMGT-CGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNNM 195 (287)
Q Consensus 117 ~~L~k~~~~~~A~qv~~~M~~~G~~pd~~T-YnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~G~ 195 (287)
..|...|++++|..+|..... +.|.... |-.|=-++-..|++++|...|.....-+.. -|...|| +=-+|.+.|+
T Consensus 43 ~~ly~~G~l~~A~~~f~~L~~--~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~~~-ag~c~L~lG~ 118 (157)
T PRK15363 43 MQLMEVKEFAGAARLFQLLTI--YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAPWA-AAECYLACDN 118 (157)
T ss_pred HHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHH-HHHHHHHcCC
Confidence 357889999999999998765 3454444 344445556789999999999987765532 2333455 4557889999
Q ss_pred HhHHHHHHHHHHH
Q 047178 196 LERLIKLFKGLEA 208 (287)
Q Consensus 196 ~eeA~~Lf~eM~~ 208 (287)
.+.|.+-|+.-..
T Consensus 119 ~~~A~~aF~~Ai~ 131 (157)
T PRK15363 119 VCYAIKALKAVVR 131 (157)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999986554
No 215
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=59.94 E-value=1.2e+02 Score=26.46 Aligned_cols=115 Identities=11% Similarity=0.074 Sum_probs=58.7
Q ss_pred HHHccchhhHHHHHHHHHHCCCCCC--hhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHcCCH
Q 047178 119 LEKEQQWHRVVQVIKWMLSKGQGST--MGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNNML 196 (287)
Q Consensus 119 L~k~~~~~~A~qv~~~M~~~G~~pd--~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~G~~ 196 (287)
+...|++.+|++.|+.+...--... .-..-.+..+|-+.|+.++|...|++.....-. -+..-|.-.+.|.+.-...
T Consensus 15 ~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~-~~~~~~A~Y~~g~~~~~~~ 93 (203)
T PF13525_consen 15 ALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPN-SPKADYALYMLGLSYYKQI 93 (203)
T ss_dssp HHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT--TTHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CcchhhHHHHHHHHHHHhC
Confidence 4456788888888888876421111 123445677888888888888888887664311 1222344444444432222
Q ss_pred hHHHHHHHHHHHCCCCCC------hHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 047178 197 ERLIKLFKGLEAFDRKPP------EKSIVQRVADAYEVLGLLEEKERVLEKYK 243 (287)
Q Consensus 197 eeA~~Lf~eM~~~Gi~PD------~~~Ty~sLI~a~~k~G~leeA~~ll~~m~ 243 (287)
...+ -...| ...+|..+|.-|=..--..+|...+..+.
T Consensus 94 ~~~~---------~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~ 137 (203)
T PF13525_consen 94 PGIL---------RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELR 137 (203)
T ss_dssp HHHH----------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHH
T ss_pred ccch---------hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHH
Confidence 2111 01111 12345556666666666666665554433
No 216
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=59.46 E-value=1.6e+02 Score=28.34 Aligned_cols=85 Identities=20% Similarity=0.137 Sum_probs=42.6
Q ss_pred HHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChHHHHHHHHHHHHhcCCHHH
Q 047178 155 DMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNNMLERLIKLFKGLEAFDRKPPEKSIVQRVADAYEVLGLLEE 234 (287)
Q Consensus 155 ~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~G~lee 234 (287)
.+.+++++|...|.+-+.-+ +.+.+.|.-==.+|++.|+++.|++=...-.. +-|.-.-+|..|=-+|...|++++
T Consensus 92 m~~~~Y~eAv~kY~~AI~l~--P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~--iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 92 MKNKDYQEAVDKYTEAIELD--PTNAVYYCNRAAAYSKLGEYEDAVKDCESALS--IDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHhhhHHHHHHHHHHHHhcC--CCcchHHHHHHHHHHHhcchHHHHHHHHHHHh--cChHHHHHHHHHHHHHHccCcHHH
Confidence 45566666666666655433 11223333344556666666666554433222 223333345555556666666666
Q ss_pred HHHHHHHHh
Q 047178 235 KERVLEKYK 243 (287)
Q Consensus 235 A~~ll~~m~ 243 (287)
|.+-+.+..
T Consensus 168 A~~aykKaL 176 (304)
T KOG0553|consen 168 AIEAYKKAL 176 (304)
T ss_pred HHHHHHhhh
Confidence 666554433
No 217
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=58.90 E-value=2.6e+02 Score=30.02 Aligned_cols=96 Identities=13% Similarity=0.086 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHccchhhHHHHHHHHHHC------CCCCChhHHHHHHHHHHHcCCH---HHHHHHHHHhhhCCCCCCC-h
Q 047178 111 SLKKALLALEKEQQWHRVVQVIKWMLSK------GQGSTMGTCGQLIRALDMDHRA---EEAHKFWEKRIGIDLHSVP-W 180 (287)
Q Consensus 111 s~~~ai~~L~k~~~~~~A~qv~~~M~~~------G~~pd~~TYnaLI~~y~K~G~l---eeA~~lF~eM~~~g~~sv~-~ 180 (287)
....-|.-|++.++|++|.+.+...+.. -...+--.|.-|-+-..++-+. -...+++..|..+- .+ +
T Consensus 171 ~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rf---tDq~ 247 (835)
T KOG2047|consen 171 AREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRF---TDQL 247 (835)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccC---cHHH
Confidence 3556777788888888888777665421 1122333444444444443322 23344555555432 12 1
Q ss_pred -hhHHHHHHHHHHcCCHhHHHHHHHHHHHC
Q 047178 181 -QLCKSMIAIYYRNNMLERLIKLFKGLEAF 209 (287)
Q Consensus 181 -~tyNsmIsgY~k~G~~eeA~~Lf~eM~~~ 209 (287)
..|++|-+-|.+.|.+|+|..+|.+-...
T Consensus 248 g~Lw~SLAdYYIr~g~~ekarDvyeeai~~ 277 (835)
T KOG2047|consen 248 GFLWCSLADYYIRSGLFEKARDVYEEAIQT 277 (835)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 35888888888888888888888775544
No 218
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=56.61 E-value=2.3e+02 Score=28.70 Aligned_cols=19 Identities=32% Similarity=0.289 Sum_probs=15.9
Q ss_pred HHHHHhcCCHHHHHHHHHH
Q 047178 223 ADAYEVLGLLEEKERVLEK 241 (287)
Q Consensus 223 I~a~~k~G~leeA~~ll~~ 241 (287)
-.+|.+.|++-++-.+++.
T Consensus 270 Aralf~d~~~rKg~~ilE~ 288 (531)
T COG3898 270 ARALFRDGNLRKGSKILET 288 (531)
T ss_pred HHHHHhccchhhhhhHHHH
Confidence 4578899999999999884
No 219
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=56.43 E-value=1.9e+02 Score=27.67 Aligned_cols=101 Identities=17% Similarity=0.097 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChHHHHHHHHHH
Q 047178 146 TCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNNMLERLIKLFKGLEAFDRKPPEKSIVQRVADA 225 (287)
Q Consensus 146 TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a 225 (287)
+.+..|.-+...|....|.++..+.. + ++-..|-..|.+|+..|++++...+... .-.| +=|-.++++
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk---v--~dkrfw~lki~aLa~~~~w~eL~~fa~s----kKsP---IGyepFv~~ 246 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK---V--PDKRFWWLKIKALAENKDWDELEKFAKS----KKSP---IGYEPFVEA 246 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC---C--cHHHHHHHHHHHHHhcCCHHHHHHHHhC----CCCC---CChHHHHHH
Confidence 45666777788999999999866542 1 3346799999999999999988886543 2233 348899999
Q ss_pred HHhcCCHHHHHHHHHHH--hHHHhhhhcccccccc
Q 047178 226 YEVLGLLEEKERVLEKY--KDLFTEKEKRSNKKSK 258 (287)
Q Consensus 226 ~~k~G~leeA~~ll~~m--~~l~~~~~~~~~~~~~ 258 (287)
|-+.|...+|.....++ .+.+.-|.+-++++.-
T Consensus 247 ~~~~~~~~eA~~yI~k~~~~~rv~~y~~~~~~~~A 281 (319)
T PF04840_consen 247 CLKYGNKKEASKYIPKIPDEERVEMYLKCGDYKEA 281 (319)
T ss_pred HHHCCCHHHHHHHHHhCChHHHHHHHHHCCCHHHH
Confidence 99999999999887753 3344455565555543
No 220
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=56.23 E-value=1.8e+02 Score=27.72 Aligned_cols=100 Identities=19% Similarity=0.129 Sum_probs=66.2
Q ss_pred CChhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChh--hHHHHHHHHHHcC--CHhHHHHHHHHHHHCCCCCChHH
Q 047178 142 STMGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQ--LCKSMIAIYYRNN--MLERLIKLFKGLEAFDRKPPEKS 217 (287)
Q Consensus 142 pd~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~--tyNsmIsgY~k~G--~~eeA~~Lf~eM~~~Gi~PD~~~ 217 (287)
-|...|-.|=..|...|++++|..-|.+-..-... .|.+ -|...+ |...| +..+|..+|+++... .|+++.
T Consensus 154 ~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~-n~~~~~g~aeaL--~~~a~~~~ta~a~~ll~~al~~--D~~~ir 228 (287)
T COG4235 154 GDAEGWDLLGRAYMALGRASDALLAYRNALRLAGD-NPEILLGLAEAL--YYQAGQQMTAKARALLRQALAL--DPANIR 228 (287)
T ss_pred CCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCC-CHHHHHHHHHHH--HHhcCCcccHHHHHHHHHHHhc--CCccHH
Confidence 36677888888888888888888888877654321 1211 133322 22333 356788888888765 466555
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhHHH
Q 047178 218 IVQRVADAYEVLGLLEEKERVLEKYKDLF 246 (287)
Q Consensus 218 Ty~sLI~a~~k~G~leeA~~ll~~m~~l~ 246 (287)
.-.-|--++...|++.+|...++.|..+-
T Consensus 229 al~lLA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 229 ALSLLAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 55555667888888888888888776553
No 221
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=55.98 E-value=1.1e+02 Score=31.67 Aligned_cols=57 Identities=12% Similarity=-0.038 Sum_probs=27.7
Q ss_pred HHHHHHccchhhHHHHHHHHHHCCCCCCh-hHHHHHHHHHHHcCCHHHHHHHHHHhhhCC
Q 047178 116 LLALEKEQQWHRVVQVIKWMLSKGQGSTM-GTCGQLIRALDMDHRAEEAHKFWEKRIGID 174 (287)
Q Consensus 116 i~~L~k~~~~~~A~qv~~~M~~~G~~pd~-~TYnaLI~~y~K~G~leeA~~lF~eM~~~g 174 (287)
.+.+.+.+++.+|++=-..- ..+.|+- --|+-+=.++---|++++|..-|.+=.+.+
T Consensus 43 saa~a~~~~~~~al~da~k~--~~l~p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d 100 (539)
T KOG0548|consen 43 SAAYASLGSYEKALKDATKT--RRLNPDWAKGYSRKGAALFGLGDYEEAILAYSEGLEKD 100 (539)
T ss_pred HHHHHHHhhHHHHHHHHHHH--HhcCCchhhHHHHhHHHHHhcccHHHHHHHHHHHhhcC
Confidence 34455555665554322221 2233442 235555555555566666666666655443
No 222
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=55.93 E-value=29 Score=28.47 Aligned_cols=45 Identities=13% Similarity=0.072 Sum_probs=30.3
Q ss_pred hHHHHHHHHHHHCCCCCChHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 047178 197 ERLIKLFKGLEAFDRKPPEKSIVQRVADAYEVLGLLEEKERVLEK 241 (287)
Q Consensus 197 eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~G~leeA~~ll~~ 241 (287)
+++.++|..|...|+--.....|...-.-+...|++++|.+|+..
T Consensus 80 ~~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 80 SDPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp SHHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 377777777777766555455677777777777777777777653
No 223
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=55.84 E-value=1.4e+02 Score=25.91 Aligned_cols=95 Identities=12% Similarity=0.068 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHccchhhHHHHHHHHHHCCCCCCh--hHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHH--
Q 047178 111 SLKKALLALEKEQQWHRVVQVIKWMLSKGQGSTM--GTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSM-- 186 (287)
Q Consensus 111 s~~~ai~~L~k~~~~~~A~qv~~~M~~~G~~pd~--~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsm-- 186 (287)
.+..+-..+++.|+...|++.+..+.+....+.. -.+-.+|....-.|++..+.....+....--...+|..-|-+
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 3445666678888888888888888776444432 345667777778888888888777654311111244433322
Q ss_pred HHHH--HHcCCHhHHHHHHHH
Q 047178 187 IAIY--YRNNMLERLIKLFKG 205 (287)
Q Consensus 187 IsgY--~k~G~~eeA~~Lf~e 205 (287)
..|+ ...|++.+|-++|-+
T Consensus 118 ~~gL~~l~~r~f~~AA~~fl~ 138 (177)
T PF10602_consen 118 YEGLANLAQRDFKEAAELFLD 138 (177)
T ss_pred HHHHHHHHhchHHHHHHHHHc
Confidence 2222 256677788887754
No 224
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=55.78 E-value=2.4e+02 Score=29.25 Aligned_cols=126 Identities=17% Similarity=0.063 Sum_probs=86.6
Q ss_pred HHHHHHHHHHccchhhHHHHHHHHHHCCCCCCh-hHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHH
Q 047178 112 LKKALLALEKEQQWHRVVQVIKWMLSKGQGSTM-GTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIY 190 (287)
Q Consensus 112 ~~~ai~~L~k~~~~~~A~qv~~~M~~~G~~pd~-~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY 190 (287)
+.+-+..=-+..++.+|..|++.-+.. -|-+ -.|---|.+=-.-|++.-|.++|+.-.+- .|+...|++.|+-=
T Consensus 110 WlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w---~P~eqaW~sfI~fE 184 (677)
T KOG1915|consen 110 WLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYIYMEEMLGNIAGARQIFERWMEW---EPDEQAWLSFIKFE 184 (677)
T ss_pred HHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHHHHHHHhcccHHHHHHHHHHHcC---CCcHHHHHHHHHHH
Confidence 344444445566677777777665442 2222 12333344445668888888888886653 25667899999988
Q ss_pred HHcCCHhHHHHHHHHHHHCCCCCChHHHHHHHHHHHHhcCCHHHHHHHHHHHhHH
Q 047178 191 YRNNMLERLIKLFKGLEAFDRKPPEKSIVQRVADAYEVLGLLEEKERVLEKYKDL 245 (287)
Q Consensus 191 ~k~G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~G~leeA~~ll~~m~~l 245 (287)
.+-...+.|..++...+- |.|+ +.+|--...==.+.|.+..+..|++...+.
T Consensus 185 lRykeieraR~IYerfV~--~HP~-v~~wikyarFE~k~g~~~~aR~VyerAie~ 236 (677)
T KOG1915|consen 185 LRYKEIERARSIYERFVL--VHPK-VSNWIKYARFEEKHGNVALARSVYERAIEF 236 (677)
T ss_pred HHhhHHHHHHHHHHHHhe--eccc-HHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 899999999999998775 4588 577766666666789999999998876653
No 225
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=55.62 E-value=53 Score=28.35 Aligned_cols=56 Identities=27% Similarity=0.272 Sum_probs=40.0
Q ss_pred HHcCCHhHHHHHHHHHHH-CCCCCChHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHHh
Q 047178 191 YRNNMLERLIKLFKGLEA-FDRKPPEKSIVQRVADAYEVLGLLEEKERVLEKYKDLFT 247 (287)
Q Consensus 191 ~k~G~~eeA~~Lf~eM~~-~Gi~PD~~~Ty~sLI~a~~k~G~leeA~~ll~~m~~l~~ 247 (287)
...++.+......+-+++ ....||. .+|..++.++...|+.++|++++.++..+|-
T Consensus 119 ~~~~~~~~l~~~~~~a~~~l~~~P~~-~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 119 RLPPDPEMLEAYIEWAERLLRRRPDP-NVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred cCCCCHHHHHHHHHHHHHHHHhCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 344444444433333332 2457884 7789999999999999999999999999887
No 226
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=55.35 E-value=1.3e+02 Score=25.58 Aligned_cols=102 Identities=14% Similarity=0.044 Sum_probs=65.6
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCC--hhhHHHHHHHHHHcCCHhHHHHHHHHHHHCC-CCCChHHHHHH
Q 047178 145 GTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVP--WQLCKSMIAIYYRNNMLERLIKLFKGLEAFD-RKPPEKSIVQR 221 (287)
Q Consensus 145 ~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~--~~tyNsmIsgY~k~G~~eeA~~Lf~eM~~~G-i~PD~~~Ty~s 221 (287)
..|+.-...| +.|+.++|.+.|+.+..+--. .+ ...-=-|+.+|.+.|++++|+..+++..+.. -.|+ +-|.-
T Consensus 12 ~ly~~a~~~l-~~~~Y~~A~~~le~L~~ryP~-g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~--vdYa~ 87 (142)
T PF13512_consen 12 ELYQEAQEAL-QKGNYEEAIKQLEALDTRYPF-GEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN--VDYAY 87 (142)
T ss_pred HHHHHHHHHH-HhCCHHHHHHHHHHHHhcCCC-CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC--ccHHH
Confidence 3344444433 568999999999999875321 11 1234458899999999999999999887653 4455 23555
Q ss_pred HHHHHHhcCCH--------------HHHHHHHHHHhHHHhhhh
Q 047178 222 VADAYEVLGLL--------------EEKERVLEKYKDLFTEKE 250 (287)
Q Consensus 222 LI~a~~k~G~l--------------eeA~~ll~~m~~l~~~~~ 250 (287)
.+.|++..... ..++..+..+..++..|.
T Consensus 88 Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP 130 (142)
T PF13512_consen 88 YMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYP 130 (142)
T ss_pred HHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCc
Confidence 66665554432 235566666666666665
No 227
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=54.57 E-value=1.4e+02 Score=32.20 Aligned_cols=109 Identities=17% Similarity=0.122 Sum_probs=73.9
Q ss_pred HHHCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCC
Q 047178 135 MLSKGQGSTMGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNNMLERLIKLFKGLEAFDRKPP 214 (287)
Q Consensus 135 M~~~G~~pd~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~G~~eeA~~Lf~eM~~~Gi~PD 214 (287)
+.-.-+..|...|--|--++..+|+++.+-+.|++-.-.-+ .....|+.+=..|.-.|....|+.|+++-...--.|+
T Consensus 314 ~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~--~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps 391 (799)
T KOG4162|consen 314 LRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSF--GEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPS 391 (799)
T ss_pred HHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh--hhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCC
Confidence 33334556888999999999999999999999998653221 1223588888999999999999999987554333366
Q ss_pred hHHHHHHHHHH-H-HhcCCHHHHHHHHHHHhHHH
Q 047178 215 EKSIVQRVADA-Y-EVLGLLEEKERVLEKYKDLF 246 (287)
Q Consensus 215 ~~~Ty~sLI~a-~-~k~G~leeA~~ll~~m~~l~ 246 (287)
+.+ .-.++.. | .+.|.+++|...-.+...++
T Consensus 392 ~~s-~~Lmasklc~e~l~~~eegldYA~kai~~~ 424 (799)
T KOG4162|consen 392 DIS-VLLMASKLCIERLKLVEEGLDYAQKAISLL 424 (799)
T ss_pred cch-HHHHHHHHHHhchhhhhhHHHHHHHHHHHh
Confidence 433 3333333 2 23566777766655554443
No 228
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=53.75 E-value=1.6e+02 Score=27.13 Aligned_cols=85 Identities=15% Similarity=0.138 Sum_probs=43.4
Q ss_pred HcCCHHHHHHHHHHhhhCC-CCCCC------hhhHHHHHHHHHHcCCHhHHHHHHHHHHHC--------CCCCCh----H
Q 047178 156 MDHRAEEAHKFWEKRIGID-LHSVP------WQLCKSMIAIYYRNNMLERLIKLFKGLEAF--------DRKPPE----K 216 (287)
Q Consensus 156 K~G~leeA~~lF~eM~~~g-~~sv~------~~tyNsmIsgY~k~G~~eeA~~Lf~eM~~~--------Gi~PD~----~ 216 (287)
+.|+++.|+.+|.+..... ...++ .+.||.-.+.|.+...+++|..++++-.+- ...||. .
T Consensus 5 ~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~ 84 (278)
T PF08631_consen 5 KQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRL 84 (278)
T ss_pred hhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHH
Confidence 5667777777777654422 11111 135776666666555666666665543221 223331 1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHH
Q 047178 217 SIVQRVADAYEVLGLLEEKERVLE 240 (287)
Q Consensus 217 ~Ty~sLI~a~~k~G~leeA~~ll~ 240 (287)
.++..++.+|-..+..+...+...
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~ 108 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALN 108 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHH
Confidence 234455566666665554444433
No 229
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=53.71 E-value=20 Score=25.89 Aligned_cols=24 Identities=17% Similarity=0.081 Sum_probs=17.9
Q ss_pred HHHHHHHHcCCHhHHHHHHHHHHH
Q 047178 185 SMIAIYYRNNMLERLIKLFKGLEA 208 (287)
Q Consensus 185 smIsgY~k~G~~eeA~~Lf~eM~~ 208 (287)
.+|.||.+.|++++|.+...++..
T Consensus 28 qvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 28 QVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH
Confidence 368888888888888888877654
No 230
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=53.39 E-value=21 Score=20.85 Aligned_cols=19 Identities=32% Similarity=0.398 Sum_probs=10.3
Q ss_pred HHHHHHHcCCHHHHHHHHH
Q 047178 150 LIRALDMDHRAEEAHKFWE 168 (287)
Q Consensus 150 LI~~y~K~G~leeA~~lF~ 168 (287)
|-..|...|+.++|+.+++
T Consensus 7 la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 7 LARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHcCCHHHHHHHHh
Confidence 4445555555555555554
No 231
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=52.37 E-value=50 Score=22.53 Aligned_cols=33 Identities=9% Similarity=0.243 Sum_probs=21.6
Q ss_pred HHcCCHhHHHHHHHHHHHCCCCCChHHHHHHHHH
Q 047178 191 YRNNMLERLIKLFKGLEAFDRKPPEKSIVQRVAD 224 (287)
Q Consensus 191 ~k~G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~ 224 (287)
.+.|..+++..++++|.+.|+.-++ ..|..++.
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~-~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISP-KLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCH-HHHHHHHH
Confidence 4667777777777777777776654 44555543
No 232
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=52.01 E-value=1.4e+02 Score=27.97 Aligned_cols=99 Identities=14% Similarity=-0.013 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHccchhhHHHHHHHHHHCCCCCChhH---HHHHHHHHHHcCCHHHHHHHHHHhhhCCCCC--CChhhHHH
Q 047178 111 SLKKALLALEKEQQWHRVVQVIKWMLSKGQGSTMGT---CGQLIRALDMDHRAEEAHKFWEKRIGIDLHS--VPWQLCKS 185 (287)
Q Consensus 111 s~~~ai~~L~k~~~~~~A~qv~~~M~~~G~~pd~~T---YnaLI~~y~K~G~leeA~~lF~eM~~~g~~s--v~~~tyNs 185 (287)
.|+.++.. .+.|++..|.+.|...+++. .-+..| +-=|-.+|...|+.++|..+|..+....-.+ .|.- .=-
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~Y-P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApda-llK 220 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKY-PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDA-LLK 220 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcC-CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHH-HHH
Confidence 46666664 45677999999999988753 223333 3337889999999999999999997643211 1222 222
Q ss_pred HHHHHHHcCCHhHHHHHHHHHHHCCCCCC
Q 047178 186 MIAIYYRNNMLERLIKLFKGLEAFDRKPP 214 (287)
Q Consensus 186 mIsgY~k~G~~eeA~~Lf~eM~~~Gi~PD 214 (287)
|=....+.|+.++|...|++.... -|+
T Consensus 221 lg~~~~~l~~~d~A~atl~qv~k~--YP~ 247 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQVIKR--YPG 247 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHH--CCC
Confidence 445667899999999999998865 455
No 233
>PRK11906 transcriptional regulator; Provisional
Probab=51.50 E-value=2.1e+02 Score=29.06 Aligned_cols=93 Identities=11% Similarity=0.105 Sum_probs=57.7
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHcCCHhHHHHHHHH-HHHCCCCCChHHHHHH
Q 047178 143 TMGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNNMLERLIKLFKG-LEAFDRKPPEKSIVQR 221 (287)
Q Consensus 143 d~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~G~~eeA~~Lf~e-M~~~Gi~PD~~~Ty~s 221 (287)
|...-..+=..+.-.|+++.|..+|++-..-+-...+...|..++..+ +|+.++|.+.+++ |.-+-.+-- ++...-
T Consensus 337 Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~--~G~~~~a~~~i~~alrLsP~~~~-~~~~~~ 413 (458)
T PRK11906 337 DGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFH--NEKIEEARICIDKSLQLEPRRRK-AVVIKE 413 (458)
T ss_pred CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHH--cCCHHHHHHHHHHHhccCchhhH-HHHHHH
Confidence 444444444444666779999999998765432112224566666544 6999999999998 444433333 244455
Q ss_pred HHHHHHhcCCHHHHHHHH
Q 047178 222 VADAYEVLGLLEEKERVL 239 (287)
Q Consensus 222 LI~a~~k~G~leeA~~ll 239 (287)
.|+.|+..+ +++|..++
T Consensus 414 ~~~~~~~~~-~~~~~~~~ 430 (458)
T PRK11906 414 CVDMYVPNP-LKNNIKLY 430 (458)
T ss_pred HHHHHcCCc-hhhhHHHH
Confidence 666777766 56666654
No 234
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=51.50 E-value=1.4e+02 Score=27.03 Aligned_cols=74 Identities=20% Similarity=0.206 Sum_probs=53.4
Q ss_pred HHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHcCCHhHHHHHHHHHHHC---CCCCChHHHHHHHHHHHHhcCCHHHHH
Q 047178 160 AEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNNMLERLIKLFKGLEAF---DRKPPEKSIVQRVADAYEVLGLLEEKE 236 (287)
Q Consensus 160 leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~G~~eeA~~Lf~eM~~~---Gi~PD~~~Ty~sLI~a~~k~G~leeA~ 236 (287)
=++|.+.|-++...+. +....-=.-+..|.-..+.++|..++....+. +=.+|. -.+.+|.+.|-+.|+++.|-
T Consensus 122 d~~A~~~fL~~E~~~~--l~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~-eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 122 DQEALRRFLQLEGTPE--LETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNP-EILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred cHHHHHHHHHHcCCCC--CCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCH-HHHHHHHHHHHHhcchhhhh
Confidence 3689999999987664 33222233456677788899999999887642 324553 55899999999999998874
No 235
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=50.95 E-value=1.7e+02 Score=25.48 Aligned_cols=63 Identities=14% Similarity=0.120 Sum_probs=42.5
Q ss_pred HHHHHHHHH---HHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHcCCHhHHHHHHHHHHHCC
Q 047178 146 TCGQLIRAL---DMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNNMLERLIKLFKGLEAFD 210 (287)
Q Consensus 146 TYnaLI~~y---~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~G~~eeA~~Lf~eM~~~G 210 (287)
+.+.||+.+ .+.+..++++.+++.|.--.-..+..-++-.+| +.+.|++++|..+|+++.+.+
T Consensus 9 iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l--~i~r~~w~dA~rlLr~l~~~~ 74 (160)
T PF09613_consen 9 IVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWL--HIVRGDWDDALRLLRELEERA 74 (160)
T ss_pred HHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHH--HHHhCCHHHHHHHHHHHhccC
Confidence 345555544 366789999999998864321111123566665 478899999999999987765
No 236
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=50.75 E-value=3.9e+02 Score=30.44 Aligned_cols=87 Identities=16% Similarity=0.143 Sum_probs=65.4
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChHHHHHHH
Q 047178 143 TMGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNNMLERLIKLFKGLEAFDRKPPEKSIVQRV 222 (287)
Q Consensus 143 d~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sL 222 (287)
|...|--.|+...+.|.+|+-.+.+..-..+.-. | ..=+.||-+|++.+++.|..++. .-||. .-..-+
T Consensus 1132 Dps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E--~-~id~eLi~AyAkt~rl~elE~fi-------~gpN~-A~i~~v 1200 (1666)
T KOG0985|consen 1132 DPSNYLEVIDVASRTGKYEDLVKYLLMARKKVRE--P-YIDSELIFAYAKTNRLTELEEFI-------AGPNV-ANIQQV 1200 (1666)
T ss_pred CcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcC--c-cchHHHHHHHHHhchHHHHHHHh-------cCCCc-hhHHHH
Confidence 5567999999999999999988876544433322 1 22488999999999988876665 34774 556778
Q ss_pred HHHHHhcCCHHHHHHHHH
Q 047178 223 ADAYEVLGLLEEKERVLE 240 (287)
Q Consensus 223 I~a~~k~G~leeA~~ll~ 240 (287)
-+-|...|+++.|+-++.
T Consensus 1201 Gdrcf~~~~y~aAkl~y~ 1218 (1666)
T KOG0985|consen 1201 GDRCFEEKMYEAAKLLYS 1218 (1666)
T ss_pred hHHHhhhhhhHHHHHHHH
Confidence 888888898888887665
No 237
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=50.56 E-value=3.1e+02 Score=28.38 Aligned_cols=68 Identities=21% Similarity=0.232 Sum_probs=44.3
Q ss_pred HHHHHHHHHHhhhCCCCCCChhhHHHHHH-HHHHcCCHhHHHHHHHHHHHCCCCCChHHHHHHHHHHHHhcCCH
Q 047178 160 AEEAHKFWEKRIGIDLHSVPWQLCKSMIA-IYYRNNMLERLIKLFKGLEAFDRKPPEKSIVQRVADAYEVLGLL 232 (287)
Q Consensus 160 leeA~~lF~eM~~~g~~sv~~~tyNsmIs-gY~k~G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~G~l 232 (287)
.+.|...|++-. +..|..+-|-.||. +|.+.|++.+|++++++.... +.-| +-...-|+.-|..+|.-
T Consensus 642 ~ekai~y~ekaa---liqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fped-ldclkflvri~~dlgl~ 710 (840)
T KOG2003|consen 642 SEKAINYFEKAA---LIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPED-LDCLKFLVRIAGDLGLK 710 (840)
T ss_pred HHHHHHHHHHHH---hcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-Cccc-hHHHHHHHHHhccccch
Confidence 344555555432 11133345888885 456889999999999998754 4334 46667788888888853
No 238
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=49.64 E-value=2.1e+02 Score=26.22 Aligned_cols=106 Identities=13% Similarity=0.121 Sum_probs=75.9
Q ss_pred CCCChhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHcCCHhHHHHHHHHHHHC---CCCCChH
Q 047178 140 QGSTMGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNNMLERLIKLFKGLEAF---DRKPPEK 216 (287)
Q Consensus 140 ~~pd~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~G~~eeA~~Lf~eM~~~---Gi~PD~~ 216 (287)
..|++..--.|-+++.+.|+..||+..|++-.. |+..-+...-=.+-.+..-.+++.+|..+++.+.+. +-.||.
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qals-G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~- 162 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALS-GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG- 162 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc-cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc-
Confidence 347777777889999999999999999998764 333233222333445556678999999999988764 567884
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhHHHhhh
Q 047178 217 SIVQRVADAYEVLGLLEEKERVLEKYKDLFTEK 249 (287)
Q Consensus 217 ~Ty~sLI~a~~k~G~leeA~~ll~~m~~l~~~~ 249 (287)
.-.+-..|.-.|..++|+.-|+....-|.++
T Consensus 163 --~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~ 193 (251)
T COG4700 163 --HLLFARTLAAQGKYADAESAFEVAISYYPGP 193 (251)
T ss_pred --hHHHHHHHHhcCCchhHHHHHHHHHHhCCCH
Confidence 2455677888899999998888655544443
No 239
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=49.61 E-value=1.2e+02 Score=26.26 Aligned_cols=102 Identities=15% Similarity=0.062 Sum_probs=62.0
Q ss_pred chHHHHHHHHHHccCCCCHHHHHHHHHHHHHccchhhHHHHHHHHHHCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHh
Q 047178 91 EDVYGTLDAWVAWEQNFPVGSLKKALLALEKEQQWHRVVQVIKWMLSKGQGSTMGTCGQLIRALDMDHRAEEAHKFWEKR 170 (287)
Q Consensus 91 ~~v~~~Ld~~~~~~~~~~~~s~~~ai~~L~k~~~~~~A~qv~~~M~~~G~~pd~~TYnaLI~~y~K~G~leeA~~lF~eM 170 (287)
..||.+|+....-++.-+...+.+++..+.+.+. +..-.+.-++.+.+.|+-|.-.++..++
T Consensus 51 ~yvv~~LdsIGkiFDis~C~NlKrVi~C~~~~n~------------------~se~vD~ALd~lv~~~kkDqLdki~~~l 112 (161)
T PF09205_consen 51 DYVVETLDSIGKIFDISKCGNLKRVIECYAKRNK------------------LSEYVDLALDILVKQGKKDQLDKIYNEL 112 (161)
T ss_dssp HHHHHHHHHHGGGS-GGG-S-THHHHHHHHHTT---------------------HHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred hHHHHHHHHHhhhcCchhhcchHHHHHHHHHhcc------------------hHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 3456667766555444444555566665555442 2223456688899999999999999887
Q ss_pred hhCCCCCCChhhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCC
Q 047178 171 IGIDLHSVPWQLCKSMIAIYYRNNMLERLIKLFKGLEAFDRK 212 (287)
Q Consensus 171 ~~~g~~sv~~~tyNsmIsgY~k~G~~eeA~~Lf~eM~~~Gi~ 212 (287)
...+- +.|.+ .=.+=++|.+.|...+|-+|+.+--+.|++
T Consensus 113 ~kn~~-~~p~~-L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 113 KKNEE-INPEF-LVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp ------S-HHH-HHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred hhccC-CCHHH-HHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 64332 23333 334678999999999999999999999985
No 240
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=49.04 E-value=1.1e+02 Score=29.07 Aligned_cols=64 Identities=17% Similarity=0.185 Sum_probs=54.9
Q ss_pred hHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHHh
Q 047178 182 LCKSMIAIYYRNNMLERLIKLFKGLEAFDRKPPEKSIVQRVADAYEVLGLLEEKERVLEKYKDLFT 247 (287)
Q Consensus 182 tyNsmIsgY~k~G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~G~leeA~~ll~~m~~l~~ 247 (287)
++..++..|...|+++.+.+.++++...... |+ -.|..++.+|.+.|....|...++.+..+..
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~-~E-~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~ 218 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPY-DE-PAYLRLMEAYLVNGRQSAAIRAYRQLKKTLA 218 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCcc-ch-HHHHHHHHHHHHcCCchHHHHHHHHHHHHhh
Confidence 3677889999999999999999999987654 44 5699999999999999999999988777544
No 241
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=49.01 E-value=2.9e+02 Score=27.70 Aligned_cols=118 Identities=21% Similarity=0.122 Sum_probs=82.7
Q ss_pred CHHHHHHHHHHHHHccchhhHHHHHH-------HHHHCC----------CCCChhHHHHHHHHHHHcCCHHHHHHHHHHh
Q 047178 108 PVGSLKKALLALEKEQQWHRVVQVIK-------WMLSKG----------QGSTMGTCGQLIRALDMDHRAEEAHKFWEKR 170 (287)
Q Consensus 108 ~~~s~~~ai~~L~k~~~~~~A~qv~~-------~M~~~G----------~~pd~~TYnaLI~~y~K~G~leeA~~lF~eM 170 (287)
|.....+++.-|.+.|..+.|+++.. --++.| ...+...|..|=+...+.|+++-|++.|.+.
T Consensus 294 ~~~~~~~i~~fL~~~G~~e~AL~~~~D~~~rFeLAl~lg~L~~A~~~a~~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~ 373 (443)
T PF04053_consen 294 PKDQGQSIARFLEKKGYPELALQFVTDPDHRFELALQLGNLDIALEIAKELDDPEKWKQLGDEALRQGNIELAEECYQKA 373 (443)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHSS-HHHHHHHHHHCT-HHHHHHHCCCCSTHHHHHHHHHHHHHTTBHHHHHHHHHHC
T ss_pred ChhHHHHHHHHHHHCCCHHHHHhhcCChHHHhHHHHhcCCHHHHHHHHHhcCcHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 34446677777888888887766542 222333 2246678999999999999999999999875
Q ss_pred hhCCCCCCChhhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 047178 171 IGIDLHSVPWQLCKSMIAIYYRNNMLERLIKLFKGLEAFDRKPPEKSIVQRVADAYEVLGLLEEKERVLEKY 242 (287)
Q Consensus 171 ~~~g~~sv~~~tyNsmIsgY~k~G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~G~leeA~~ll~~m 242 (287)
. + |..|.=-|.-.|+.++-.++...-...|- +|.-..++--.|++++..++|.+-
T Consensus 374 ~-------d---~~~L~lLy~~~g~~~~L~kl~~~a~~~~~-------~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 374 K-------D---FSGLLLLYSSTGDREKLSKLAKIAEERGD-------INIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp T-----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT--------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred c-------C---ccccHHHHHHhCCHHHHHHHHHHHHHccC-------HHHHHHHHHHcCCHHHHHHHHHHc
Confidence 3 2 78888889999999888888877676662 344455666779998888888754
No 242
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=48.77 E-value=3.6e+02 Score=28.71 Aligned_cols=89 Identities=18% Similarity=0.148 Sum_probs=57.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCCh-hhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChHHHHHHHHHH
Q 047178 147 CGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPW-QLCKSMIAIYYRNNMLERLIKLFKGLEAFDRKPPEKSIVQRVADA 225 (287)
Q Consensus 147 YnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~-~tyNsmIsgY~k~G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a 225 (287)
+--|+.-|-+.|.++.|+...+.-...- |+. -.|-+=-..|+.+|.+++|..++.+-.+-+. ||. ..-+--.+-
T Consensus 374 ~y~laqh~D~~g~~~~A~~yId~AIdHT---PTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~-aDR-~INsKcAKY 448 (700)
T KOG1156|consen 374 LYFLAQHYDKLGDYEVALEYIDLAIDHT---PTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDT-ADR-AINSKCAKY 448 (700)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHhccC---chHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccc-hhH-HHHHHHHHH
Confidence 3446777888899999998888776531 221 1344444667888999999999988776653 563 322233344
Q ss_pred HHhcCCHHHHHHHHH
Q 047178 226 YEVLGLLEEKERVLE 240 (287)
Q Consensus 226 ~~k~G~leeA~~ll~ 240 (287)
.-++.++++|.++..
T Consensus 449 mLrAn~i~eA~~~~s 463 (700)
T KOG1156|consen 449 MLRANEIEEAEEVLS 463 (700)
T ss_pred HHHccccHHHHHHHH
Confidence 445677777776654
No 243
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=48.45 E-value=64 Score=27.85 Aligned_cols=28 Identities=4% Similarity=-0.135 Sum_probs=17.6
Q ss_pred hhHHHHHHHHHHcCCHhHHHHHHHHHHH
Q 047178 181 QLCKSMIAIYYRNNMLERLIKLFKGLEA 208 (287)
Q Consensus 181 ~tyNsmIsgY~k~G~~eeA~~Lf~eM~~ 208 (287)
.+|..++..+...|+.++|..+..++..
T Consensus 145 ~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 145 NVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3466666666666666666666666553
No 244
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=47.90 E-value=1.7e+02 Score=33.14 Aligned_cols=83 Identities=17% Similarity=0.220 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHccchhhHHHHHHHHHHCCCCCCh--hHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHH
Q 047178 111 SLKKALLALEKEQQWHRVVQVIKWMLSKGQGSTM--GTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIA 188 (287)
Q Consensus 111 s~~~ai~~L~k~~~~~~A~qv~~~M~~~G~~pd~--~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIs 188 (287)
...+|+..+...++|++|+.+...|.. +.|- .+--.|+.-+...|+.-||-++..+-... +.--+.
T Consensus 967 klekAl~a~~~~~dWr~~l~~a~ql~~---~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd---------~~~av~ 1034 (1265)
T KOG1920|consen 967 KLEKALKAYKECGDWREALSLAAQLSE---GKDELVILAEELVSRLVEQRKHYEAAKILLEYLSD---------PEEAVA 1034 (1265)
T ss_pred cHHHHHHHHHHhccHHHHHHHHHhhcC---CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC---------HHHHHH
Confidence 345788888888999999888877632 2232 23366888888888888888887765321 356778
Q ss_pred HHHHcCCHhHHHHHHHH
Q 047178 189 IYYRNNMLERLIKLFKG 205 (287)
Q Consensus 189 gY~k~G~~eeA~~Lf~e 205 (287)
-||+.-.+++|+.+-..
T Consensus 1035 ll~ka~~~~eAlrva~~ 1051 (1265)
T KOG1920|consen 1035 LLCKAKEWEEALRVASK 1051 (1265)
T ss_pred HHhhHhHHHHHHHHHHh
Confidence 88988899999887654
No 245
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=47.84 E-value=35 Score=26.36 Aligned_cols=45 Identities=9% Similarity=0.168 Sum_probs=22.5
Q ss_pred cCCHHHHHHHHHHhhhCCCCCCC-hhhHHHHHHHHHHcCCHhHHHH
Q 047178 157 DHRAEEAHKFWEKRIGIDLHSVP-WQLCKSMIAIYYRNNMLERLIK 201 (287)
Q Consensus 157 ~G~leeA~~lF~eM~~~g~~sv~-~~tyNsmIsgY~k~G~~eeA~~ 201 (287)
...-++|...|.+..++-..+.+ +.+...|+.+||.-|.+.++++
T Consensus 19 ~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~ 64 (80)
T PF10579_consen 19 QNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLA 64 (80)
T ss_pred cchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555666555544332111 1345555666666666555554
No 246
>PRK14135 recX recombination regulator RecX; Provisional
Probab=47.31 E-value=2.1e+02 Score=25.99 Aligned_cols=106 Identities=11% Similarity=0.116 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHccchhhHHHHHHHHHHCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHH
Q 047178 111 SLKKALLALEKEQQWHRVVQVIKWMLSKGQGSTMGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIY 190 (287)
Q Consensus 111 s~~~ai~~L~k~~~~~~A~qv~~~M~~~G~~pd~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY 190 (287)
....|+..|....+.. .++...+..+|+.+++ -...|.-|...|-+++ .+ .--..+..+
T Consensus 59 a~~~Al~~L~~r~~s~--~el~~kL~~kg~~~~~--Ie~vl~~l~~~~~ldD-~~----------------~a~~~~~~~ 117 (263)
T PRK14135 59 GKNLALYYLSYQMRTE--KEVRDYLKKHEISEEI--ISEVIDKLKEEKYIDD-KE----------------YAESYVRTN 117 (263)
T ss_pred HHHHHHHHhhhccccH--HHHHHHHHHCCCCHHH--HHHHHHHHHHcCCCCH-HH----------------HHHHHHHHH
Confidence 4555666666544433 5777788888876543 2333444444444333 11 111122222
Q ss_pred HHcCCHhHHHHHHHHHHHCCCCCChHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 047178 191 YRNNMLERLIKLFKGLEAFDRKPPEKSIVQRVADAYEVLGLLEEKERVLEK 241 (287)
Q Consensus 191 ~k~G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~G~leeA~~ll~~ 241 (287)
.+.+. .--.++-.+|...|+.++. ...+|..+...+.++.|..+...
T Consensus 118 ~~~~~-~g~~~I~~kL~~kGi~~~~---Ie~~l~~l~~~~~~d~a~~~~~k 164 (263)
T PRK14135 118 INTGD-KGPRVIKQKLLQKGIEDEI---IEEALSEYTEEDQIEVAQKLAEK 164 (263)
T ss_pred Hhccc-cchHHHHHHHHHcCCCHHH---HHHHHHhCChhhHHHHHHHHHHH
Confidence 22221 1224566667777776652 34555544444555555555443
No 247
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=47.15 E-value=66 Score=26.33 Aligned_cols=79 Identities=13% Similarity=0.060 Sum_probs=54.0
Q ss_pred hhhHHHHHHHHHHCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHcCCHhHHHHHHH
Q 047178 125 WHRVVQVIKWMLSKGQGSTMGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNNMLERLIKLFK 204 (287)
Q Consensus 125 ~~~A~qv~~~M~~~G~~pd~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~G~~eeA~~Lf~ 204 (287)
.++|.-+-+|+...|..-.+ +--+=+..+...|+.++|..+.+.+.- |+...|-+|- =.|.|..+++..-+.
T Consensus 21 HqEA~tIAdwL~~~~~~~E~-v~lIRlsSLmNrG~Yq~Al~l~~~~~~-----pdlepw~ALc--e~rlGl~s~l~~rl~ 92 (115)
T TIGR02508 21 HQEANTIADWLHLKGESEEA-VQLIRLSSLMNRGDYQSALQLGNKLCY-----PDLEPWLALC--EWRLGLGSALESRLN 92 (115)
T ss_pred HHHHHHHHHHHhcCCchHHH-HHHHHHHHHHccchHHHHHHhcCCCCC-----chHHHHHHHH--HHhhccHHHHHHHHH
Confidence 45677778887766544222 222234567789999999998777643 3333465542 248999999999999
Q ss_pred HHHHCCC
Q 047178 205 GLEAFDR 211 (287)
Q Consensus 205 eM~~~Gi 211 (287)
+|..+|-
T Consensus 93 rla~sg~ 99 (115)
T TIGR02508 93 RLAASGD 99 (115)
T ss_pred HHHhCCC
Confidence 9999884
No 248
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=46.08 E-value=70 Score=26.20 Aligned_cols=44 Identities=0% Similarity=0.034 Sum_probs=28.2
Q ss_pred HHHHHHHHhhhCCCCCCChhhHHHHHHHHHHcCCHhHHHHHHHH
Q 047178 162 EAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNNMLERLIKLFKG 205 (287)
Q Consensus 162 eA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~G~~eeA~~Lf~e 205 (287)
++.++|..|..+++..--...|-.-=.-+.+.|++++|.++|..
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 77788888877665422223455555666777888888887753
No 249
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=45.23 E-value=52 Score=19.64 Aligned_cols=27 Identities=7% Similarity=0.144 Sum_probs=17.0
Q ss_pred hHHHHHHHHHHcCCHhHHHHHHHHHHH
Q 047178 182 LCKSMIAIYYRNNMLERLIKLFKGLEA 208 (287)
Q Consensus 182 tyNsmIsgY~k~G~~eeA~~Lf~eM~~ 208 (287)
+|..+=..|...|++++|+.-|++..+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 355566667777777777777766544
No 250
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.47 E-value=2.4e+02 Score=30.53 Aligned_cols=114 Identities=18% Similarity=0.089 Sum_probs=85.7
Q ss_pred CCCHHHHHHHHHHHHHccchhhHHHHHHHHHHCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHH
Q 047178 106 NFPVGSLKKALLALEKEQQWHRVVQVIKWMLSKGQGSTMGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKS 185 (287)
Q Consensus 106 ~~~~~s~~~ai~~L~k~~~~~~A~qv~~~M~~~G~~pd~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNs 185 (287)
.|.-.+++..+..|-..|+-.+|.++-.+. --||--.|=-=|.+|+..+++++-+++-.++.. | +=|-.
T Consensus 681 ~f~dlSl~dTv~~li~~g~~k~a~ql~~~F----kipdKr~~wLk~~aLa~~~kweeLekfAkskks------P-IGy~P 749 (829)
T KOG2280|consen 681 SFVDLSLHDTVTTLILIGQNKRAEQLKSDF----KIPDKRLWWLKLTALADIKKWEELEKFAKSKKS------P-IGYLP 749 (829)
T ss_pred ccccCcHHHHHHHHHHccchHHHHHHHHhc----CCcchhhHHHHHHHHHhhhhHHHHHHHHhccCC------C-CCchh
Confidence 455567888888888888888887776553 247877888889999999999998888776643 1 12667
Q ss_pred HHHHHHHcCCHhHHHHHHHHHHHCCCCCChHHHHHHHHHHHHhcCCHHHHHHHHH
Q 047178 186 MIAIYYRNNMLERLIKLFKGLEAFDRKPPEKSIVQRVADAYEVLGLLEEKERVLE 240 (287)
Q Consensus 186 mIsgY~k~G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~G~leeA~~ll~ 240 (287)
.+.++.+.|+.+||.+.+... ++ +.-...+|...|++.+|-++-.
T Consensus 750 FVe~c~~~~n~~EA~KYiprv------~~----l~ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 750 FVEACLKQGNKDEAKKYIPRV------GG----LQEKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred HHHHHHhcccHHHHhhhhhcc------CC----hHHHHHHHHHhccHHHHHHHHH
Confidence 788889999999999988642 22 1245678999999999887643
No 251
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=43.20 E-value=2.8e+02 Score=25.91 Aligned_cols=101 Identities=14% Similarity=0.175 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCCh--hhHHHHHHHHHHcCCHhHHHHHHHHHH-HCCCCCChHHHHHHH
Q 047178 146 TCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPW--QLCKSMIAIYYRNNMLERLIKLFKGLE-AFDRKPPEKSIVQRV 222 (287)
Q Consensus 146 TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~--~tyNsmIsgY~k~G~~eeA~~Lf~eM~-~~Gi~PD~~~Ty~sL 222 (287)
-|+.-+.-| ..|++++|.+.|+.+..+... -|+ .+-=.++-++.+.|++++|+..+++-. ..+-.|| +-|..-
T Consensus 37 LY~~g~~~L-~~gn~~~A~~~fe~l~~~~p~-s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n--~dY~~Y 112 (254)
T COG4105 37 LYNEGLTEL-QKGNYEEAIKYFEALDSRHPF-SPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPN--ADYAYY 112 (254)
T ss_pred HHHHHHHHH-hcCCHHHHHHHHHHHHHcCCC-CcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCC--hhHHHH
Confidence 344444333 456677777777766654321 122 112224455666777777776666544 3455565 224444
Q ss_pred HHHHHhc-------CCHHHHHHHHHHHhHHHhhhh
Q 047178 223 ADAYEVL-------GLLEEKERVLEKYKDLFTEKE 250 (287)
Q Consensus 223 I~a~~k~-------G~leeA~~ll~~m~~l~~~~~ 250 (287)
|.|++.. .+-..+.+-+..+.+++..|.
T Consensus 113 lkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryP 147 (254)
T COG4105 113 LKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYP 147 (254)
T ss_pred HHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCC
Confidence 4454432 234445555566666665554
No 252
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.89 E-value=56 Score=35.06 Aligned_cols=73 Identities=16% Similarity=0.149 Sum_probs=54.0
Q ss_pred HHHHHHccchhhHHHHHHHHHHCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHcCC
Q 047178 116 LLALEKEQQWHRVVQVIKWMLSKGQGSTMGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNNM 195 (287)
Q Consensus 116 i~~L~k~~~~~~A~qv~~~M~~~G~~pd~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~G~ 195 (287)
+.+|...++|++-.++-+.+. ..+=|--.+..+-+.|+.+||.+.+-+.. + +.-.+.+|.+.|.
T Consensus 722 ~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~-------~---l~ekv~ay~~~~~ 785 (829)
T KOG2280|consen 722 LTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVG-------G---LQEKVKAYLRVGD 785 (829)
T ss_pred HHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhccC-------C---hHHHHHHHHHhcc
Confidence 556788888886655554432 24557778899999999999999987642 1 2357889999999
Q ss_pred HhHHHHHHH
Q 047178 196 LERLIKLFK 204 (287)
Q Consensus 196 ~eeA~~Lf~ 204 (287)
+.+|.++-.
T Consensus 786 ~~eAad~A~ 794 (829)
T KOG2280|consen 786 VKEAADLAA 794 (829)
T ss_pred HHHHHHHHH
Confidence 999987644
No 253
>PF07218 RAP1: Rhoptry-associated protein 1 (RAP-1); InterPro: IPR009864 This family consists of several rhoptry-associated protein 1 (RAP-1) sequences which appear to be specific to Plasmodium falciparum [].
Probab=42.43 E-value=73 Score=33.23 Aligned_cols=112 Identities=10% Similarity=0.090 Sum_probs=66.3
Q ss_pred CCCcccHHHHHHHHHccC-CCcchHHHHHH----HHHHccCCCCHHHHHHHHHHHHHcc--chhhHHHHHHHHHH-----
Q 047178 70 VPRKDKINFLVNTLLDLK-NSKEDVYGTLD----AWVAWEQNFPVGSLKKALLALEKEQ--QWHRVVQVIKWMLS----- 137 (287)
Q Consensus 70 ~s~~~~~~~Li~~l~~lg-~~~~~v~~~Ld----~~~~~~~~~~~~s~~~ai~~L~k~~--~~~~A~qv~~~M~~----- 137 (287)
+||+. +.|++.+...- +..+++|..|- .+..-...++...+..+| .+.... ...+++++...+.+
T Consensus 537 LSYKS--rKlV~klf~eIqknpd~~~eKltwI~enmy~ikryYt~~Af~~vC-~Y~~~d~~nI~~a~~my~~i~e~~Rly 613 (782)
T PF07218_consen 537 LSYKS--RKLVNKLFNEIQKNPDPYFEKLTWIYENMYHIKRYYTFFAFKTVC-KYVEHDKSNIYEALQMYSYIAEYIRLY 613 (782)
T ss_pred cchhH--HHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHhhhhHHhhhhhH-HHHhhchHHHHHHHHHHHHHHHHHHHH
Confidence 66655 45555544431 22233443321 122222345566677777 554444 67778777776654
Q ss_pred CCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHH
Q 047178 138 KGQGSTMGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYY 191 (287)
Q Consensus 138 ~G~~pd~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~ 191 (287)
..|-.++..||++|.+. .+....++.-|++.++ +.++.|++|++-.-
T Consensus 614 ssCfKN~iIYNaVISgI-----heqmK~lmkl~PR~~i--L~DiHF~aLL~K~k 660 (782)
T PF07218_consen 614 SSCFKNMIIYNAVISGI-----HEQMKNLMKLMPRKPI--LKDIHFEALLNKEK 660 (782)
T ss_pred HHHhhhhHhHHHHHHHH-----HHHHHHHHHhCCCcch--hHHHHHHHHhhhcc
Confidence 23667899999999865 4667777777877765 44566777766544
No 254
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=42.34 E-value=3.7e+02 Score=26.97 Aligned_cols=130 Identities=13% Similarity=-0.054 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHHccchhhHHHHHHHHHHC-CCCC-----ChhHHHHHHHHHHH----cCCHHHHHHHHHHhhhCCCCCCC
Q 047178 110 GSLKKALLALEKEQQWHRVVQVIKWMLSK-GQGS-----TMGTCGQLIRALDM----DHRAEEAHKFWEKRIGIDLHSVP 179 (287)
Q Consensus 110 ~s~~~ai~~L~k~~~~~~A~qv~~~M~~~-G~~p-----d~~TYnaLI~~y~K----~G~leeA~~lF~eM~~~g~~sv~ 179 (287)
+.+.+++..++=.|+-+.+++++..-.+. |+.- -..+|...+..++- ...++.|+++++.+..+- |.
T Consensus 189 p~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~y---P~ 265 (468)
T PF10300_consen 189 PKVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRY---PN 265 (468)
T ss_pred HHHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhC---CC
Confidence 45667777777778878887777654332 1211 12457777766654 568899999999998763 22
Q ss_pred hhhHHHHH-HHHHHcCCHhHHHHHHHHHHHCC--CCC-ChHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 047178 180 WQLCKSMI-AIYYRNNMLERLIKLFKGLEAFD--RKP-PEKSIVQRVADAYEVLGLLEEKERVLEKYK 243 (287)
Q Consensus 180 ~~tyNsmI-sgY~k~G~~eeA~~Lf~eM~~~G--i~P-D~~~Ty~sLI~a~~k~G~leeA~~ll~~m~ 243 (287)
...|.-+- ..+...|++++|++.|++..... .+. .....|-. .-.+.-.+++++|...+..+.
T Consensus 266 s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El-~w~~~~~~~w~~A~~~f~~L~ 332 (468)
T PF10300_consen 266 SALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFEL-AWCHMFQHDWEEAAEYFLRLL 332 (468)
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHH-HHHHHHHchHHHHHHHHHHHH
Confidence 22333222 23457899999999999765321 111 11222222 224666788999888776433
No 255
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.73 E-value=2.5e+02 Score=30.76 Aligned_cols=87 Identities=13% Similarity=0.091 Sum_probs=53.0
Q ss_pred HHHHHHHHHHccchhhHHHHHHHHHHCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHH
Q 047178 112 LKKALLALEKEQQWHRVVQVIKWMLSKGQGSTMGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYY 191 (287)
Q Consensus 112 ~~~ai~~L~k~~~~~~A~qv~~~M~~~G~~pd~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~ 191 (287)
...+|..+-+..+.+.-...++.+.++|+... .--+.||++|.|-++++.-.++.+.-. .|.. . .-.-+.+..+.
T Consensus 400 ~s~Vi~kfLdaq~IknLt~YLe~L~~~gla~~-dhttlLLncYiKlkd~~kL~efI~~~~-~g~~-~--fd~e~al~Ilr 474 (933)
T KOG2114|consen 400 PSEVIKKFLDAQRIKNLTSYLEALHKKGLANS-DHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW-F--FDVETALEILR 474 (933)
T ss_pred hHHHHHHhcCHHHHHHHHHHHHHHHHcccccc-hhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce-e--eeHHHHHHHHH
Confidence 34556666666666666667777778887532 234789999999998888777666543 2221 0 01344555555
Q ss_pred HcCCHhHHHHHH
Q 047178 192 RNNMLERLIKLF 203 (287)
Q Consensus 192 k~G~~eeA~~Lf 203 (287)
+.+..++|.-|-
T Consensus 475 ~snyl~~a~~LA 486 (933)
T KOG2114|consen 475 KSNYLDEAELLA 486 (933)
T ss_pred HhChHHHHHHHH
Confidence 555555555443
No 256
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=40.76 E-value=27 Score=21.89 Aligned_cols=24 Identities=25% Similarity=0.274 Sum_probs=12.8
Q ss_pred CChHHHHHHHHHHHHhcCCHHHHH
Q 047178 213 PPEKSIVQRVADAYEVLGLLEEKE 236 (287)
Q Consensus 213 PD~~~Ty~sLI~a~~k~G~leeA~ 236 (287)
||....|+-+-..|...|+.++|+
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 444455555555555555555553
No 257
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=40.72 E-value=3.8e+02 Score=26.69 Aligned_cols=118 Identities=11% Similarity=-0.063 Sum_probs=62.2
Q ss_pred HHHccchhhHHHHHHHHHHCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhhhC-CCCCCChhhHHHHHH--HHHHcCC
Q 047178 119 LEKEQQWHRVVQVIKWMLSKGQGSTMGTCGQLIRALDMDHRAEEAHKFWEKRIGI-DLHSVPWQLCKSMIA--IYYRNNM 195 (287)
Q Consensus 119 L~k~~~~~~A~qv~~~M~~~G~~pd~~TYnaLI~~y~K~G~leeA~~lF~eM~~~-g~~sv~~~tyNsmIs--gY~k~G~ 195 (287)
+--.|..++|...++.+++. ++.|+..++--=+++.-.|+.+.-...|++...+ +- -.|-++|=-=|- |+-..|-
T Consensus 113 ~~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~-dlp~~sYv~GmyaFgL~E~g~ 190 (491)
T KOG2610|consen 113 LWGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNA-DLPCYSYVHGMYAFGLEECGI 190 (491)
T ss_pred hhccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCC-CCcHHHHHHHHHHhhHHHhcc
Confidence 44456666666666666543 5566666666667777777777777777666543 11 123222211111 2335666
Q ss_pred HhHHHHHHHHHHHCCCCCChHHHHHHHHHHHHhcCCHHHHHHHHH
Q 047178 196 LERLIKLFKGLEAFDRKPPEKSIVQRVADAYEVLGLLEEKERVLE 240 (287)
Q Consensus 196 ~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~G~leeA~~ll~ 240 (287)
+++|.+.-++-.+ +.|.+.-..-++-+.+...|++.++.+...
T Consensus 191 y~dAEk~A~ralq--iN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~ 233 (491)
T KOG2610|consen 191 YDDAEKQADRALQ--INRFDCWASHAKAHVLEMNGRHKEGKEFMY 233 (491)
T ss_pred chhHHHHHHhhcc--CCCcchHHHHHHHHHHHhcchhhhHHHHHH
Confidence 6777666554222 222222223445555556666666666554
No 258
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=40.43 E-value=57 Score=27.08 Aligned_cols=44 Identities=16% Similarity=0.119 Sum_probs=30.5
Q ss_pred hHHHHHHHHHHHCCCCCChHHHHHHHHHHHHhcCCHHHHHHHHH
Q 047178 197 ERLIKLFKGLEAFDRKPPEKSIVQRVADAYEVLGLLEEKERVLE 240 (287)
Q Consensus 197 eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~G~leeA~~ll~ 240 (287)
+++.++|..|...||--.....|-..-.-+...|++.+|.+|+.
T Consensus 80 ~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 80 DEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 45677777777777655544556666666777788888777764
No 259
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=40.39 E-value=2.4e+02 Score=24.36 Aligned_cols=95 Identities=11% Similarity=0.042 Sum_probs=50.5
Q ss_pred HHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHcCCHhHHHHHHHHHHH-CCCCCChHHHHHHH---HHHHHh
Q 047178 153 ALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNNMLERLIKLFKGLEA-FDRKPPEKSIVQRV---ADAYEV 228 (287)
Q Consensus 153 ~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~G~~eeA~~Lf~eM~~-~Gi~PD~~~Ty~sL---I~a~~k 228 (287)
+++..|+++.|.+.|.+-..-- +.....||-=-.+|.-.|+.++|++=+.+-.+ .|-+- .+...+. -.-|..
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~--P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~t--rtacqa~vQRg~lyRl 127 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLA--PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQT--RTACQAFVQRGLLYRL 127 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhc--ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccc--hHHHHHHHHHHHHHHH
Confidence 3456677777777777654321 11113467666777777777777766655443 23221 1111111 112555
Q ss_pred cCCHHHHHHHHHHHhHHHhhhhc
Q 047178 229 LGLLEEKERVLEKYKDLFTEKEK 251 (287)
Q Consensus 229 ~G~leeA~~ll~~m~~l~~~~~~ 251 (287)
.|+.+.|+.=|+..-.|-..|-+
T Consensus 128 ~g~dd~AR~DFe~AA~LGS~FAr 150 (175)
T KOG4555|consen 128 LGNDDAARADFEAAAQLGSKFAR 150 (175)
T ss_pred hCchHHHHHhHHHHHHhCCHHHH
Confidence 67777777666665555554443
No 260
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=40.35 E-value=1.1e+02 Score=24.57 Aligned_cols=27 Identities=11% Similarity=0.070 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhhh
Q 047178 146 TCGQLIRALDMDHRAEEAHKFWEKRIG 172 (287)
Q Consensus 146 TYnaLI~~y~K~G~leeA~~lF~eM~~ 172 (287)
-|..|+.-|-..|..++|.+++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 389999999999999999999999876
No 261
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=39.61 E-value=4.3e+02 Score=26.99 Aligned_cols=50 Identities=10% Similarity=0.118 Sum_probs=38.2
Q ss_pred HHHHcCCHhHHHHHHHHHHHCCCCCChHHHHHHHHHHHHhcCCHHHHHHHHH
Q 047178 189 IYYRNNMLERLIKLFKGLEAFDRKPPEKSIVQRVADAYEVLGLLEEKERVLE 240 (287)
Q Consensus 189 gY~k~G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~G~leeA~~ll~ 240 (287)
.+...|++++|.--|+.-.. +.|-..-.|.-|+++|-..|.+.||.-+-.
T Consensus 343 lL~~~~R~~~A~IaFR~Aq~--Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An 392 (564)
T KOG1174|consen 343 LLIALERHTQAVIAFRTAQM--LAPYRLEIYRGLFHSYLAQKRFKEANALAN 392 (564)
T ss_pred HHHhccchHHHHHHHHHHHh--cchhhHHHHHHHHHHHHhhchHHHHHHHHH
Confidence 45567788888888876543 445445679999999999999999987655
No 262
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=39.10 E-value=4.5e+02 Score=27.77 Aligned_cols=104 Identities=13% Similarity=0.091 Sum_probs=72.6
Q ss_pred HHHHHHHHHHccchhhHHHHHHHHHHCCCCCChhHHHHHHHHHH-HcCCHHHHHHHHHHhhhCC-CCCCChhhHHHHHHH
Q 047178 112 LKKALLALEKEQQWHRVVQVIKWMLSKGQGSTMGTCGQLIRALD-MDHRAEEAHKFWEKRIGID-LHSVPWQLCKSMIAI 189 (287)
Q Consensus 112 ~~~ai~~L~k~~~~~~A~qv~~~M~~~G~~pd~~TYnaLI~~y~-K~G~leeA~~lF~eM~~~g-~~sv~~~tyNsmIsg 189 (287)
+-+-+..|.+.|.|+-|.++.+-+.+..-.-|....-.+|+-|+ ++..+.--.++|++-...+ +.-.|+..|+.-|.-
T Consensus 345 l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~yS~AlA~ 424 (665)
T KOG2422|consen 345 LFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFGYSLALAR 424 (665)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCchHHHHHHH
Confidence 34566778899999999998888887655557778888899887 6777887888888764322 222455678888888
Q ss_pred HHHcCCHh-----------HHHHHH-----HHHHHCCCCCCh
Q 047178 190 YYRNNMLE-----------RLIKLF-----KGLEAFDRKPPE 215 (287)
Q Consensus 190 Y~k~G~~e-----------eA~~Lf-----~eM~~~Gi~PD~ 215 (287)
+.-+++.+ .|+.+| .-|....+.||.
T Consensus 425 f~l~~~~~~~rqsa~~~l~qAl~~~P~vl~eLld~~~l~~da 466 (665)
T KOG2422|consen 425 FFLRKNEEDDRQSALNALLQALKHHPLVLSELLDELLLGDDA 466 (665)
T ss_pred HHHhcCChhhHHHHHHHHHHHHHhCcHHHHHHHHhccCCchh
Confidence 77777664 333333 344556777774
No 263
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=38.96 E-value=3e+02 Score=24.94 Aligned_cols=127 Identities=14% Similarity=0.107 Sum_probs=78.8
Q ss_pred HHHHHHHHccchhhHHHHHHHHHHCCCCCChhHHHHHHHHHHH--c------------------CCHHHHHHHHHHhhhC
Q 047178 114 KALLALEKEQQWHRVVQVIKWMLSKGQGSTMGTCGQLIRALDM--D------------------HRAEEAHKFWEKRIGI 173 (287)
Q Consensus 114 ~ai~~L~k~~~~~~A~qv~~~M~~~G~~pd~~TYnaLI~~y~K--~------------------G~leeA~~lF~eM~~~ 173 (287)
.+...+.+.+++..|...++...+.--...-+-|--.+.|+|. . ....+|...|++.+.+
T Consensus 74 ~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~ 153 (243)
T PRK10866 74 DLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG 153 (243)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH
Confidence 4456678889999999999988875322222345555555542 1 1134677777777764
Q ss_pred CCCCC--Ch------hh------HH-HHHHHHHHcCCHhHHHHHHHHHHHC--CCCCChHHHHHHHHHHHHhcCCHHHHH
Q 047178 174 DLHSV--PW------QL------CK-SMIAIYYRNNMLERLIKLFKGLEAF--DRKPPEKSIVQRVADAYEVLGLLEEKE 236 (287)
Q Consensus 174 g~~sv--~~------~t------yN-smIsgY~k~G~~eeA~~Lf~eM~~~--Gi~PD~~~Ty~sLI~a~~k~G~leeA~ 236 (287)
--.+. +. .. .- .+-.-|.+.|.+.-|..=|+.+.+. +.... .-..-.++.+|-.+|..++|.
T Consensus 154 yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~-~eal~~l~~ay~~lg~~~~a~ 232 (243)
T PRK10866 154 YPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQAT-RDALPLMENAYRQLQLNAQAD 232 (243)
T ss_pred CcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchH-HHHHHHHHHHHHHcCChHHHH
Confidence 21110 00 00 11 1223488999999999999999864 11111 123457889999999999999
Q ss_pred HHHHH
Q 047178 237 RVLEK 241 (287)
Q Consensus 237 ~ll~~ 241 (287)
.+...
T Consensus 233 ~~~~~ 237 (243)
T PRK10866 233 KVAKI 237 (243)
T ss_pred HHHHH
Confidence 87654
No 264
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.72 E-value=3.5e+02 Score=25.70 Aligned_cols=107 Identities=15% Similarity=0.155 Sum_probs=77.5
Q ss_pred HHHccchhhHHHHHHHHHHCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHcCCHhH
Q 047178 119 LEKEQQWHRVVQVIKWMLSKGQGSTMGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNNMLER 198 (287)
Q Consensus 119 L~k~~~~~~A~qv~~~M~~~G~~pd~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~G~~ee 198 (287)
|.-.|.+++|+++++..++.. +.|.++|--=|-.+--.|+--+|.+-..+-.+.-. .+.-.|--+=..|.-.|++++
T Consensus 96 lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~--~D~EAW~eLaeiY~~~~~f~k 172 (289)
T KOG3060|consen 96 LEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFM--NDQEAWHELAEIYLSEGDFEK 172 (289)
T ss_pred HHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhc--CcHHHHHHHHHHHHhHhHHHH
Confidence 566789999999999988765 45777887666666666766678777666655432 344579999999999999999
Q ss_pred HHHHHHHHHHCCCCCChHHHHHHHHHHHHhcC
Q 047178 199 LIKLFKGLEAFDRKPPEKSIVQRVADAYEVLG 230 (287)
Q Consensus 199 A~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~G 230 (287)
|.=-+++|.-. .|-....|..+-+.+.-.|
T Consensus 173 A~fClEE~ll~--~P~n~l~f~rlae~~Yt~g 202 (289)
T KOG3060|consen 173 AAFCLEELLLI--QPFNPLYFQRLAEVLYTQG 202 (289)
T ss_pred HHHHHHHHHHc--CCCcHHHHHHHHHHHHHHh
Confidence 99999999864 3433344566665555444
No 265
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=38.71 E-value=1.1e+02 Score=25.01 Aligned_cols=42 Identities=21% Similarity=0.274 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHCCCCCChHHHHHHHHHHHHhcCCHHHHHHHHH
Q 047178 198 RLIKLFKGLEAFDRKPPEKSIVQRVADAYEVLGLLEEKERVLE 240 (287)
Q Consensus 198 eA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~G~leeA~~ll~ 240 (287)
++.+-+..+....+.|+. .+..+.|.||.+.+++.-|.++|+
T Consensus 28 e~rrglN~l~~~DlVP~P-~ii~aALrAcRRvND~a~AVR~lE 69 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEP-KIIEAALRACRRVNDFALAVRILE 69 (108)
T ss_dssp HHHHHHHHHTTSSB---H-HHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCh-HHHHHHHHHHHHhhhHHHHHHHHH
Confidence 344444455555566653 445666666666666666666655
No 266
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=38.36 E-value=1.2e+02 Score=24.54 Aligned_cols=42 Identities=19% Similarity=0.267 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHCCCCCChHHHHHHHHHHHHhcCCHHHHHHHHH
Q 047178 198 RLIKLFKGLEAFDRKPPEKSIVQRVADAYEVLGLLEEKERVLE 240 (287)
Q Consensus 198 eA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~G~leeA~~ll~ 240 (287)
++.+-+..+....+.|+. -...+.++||-+.+++.-|.++|+
T Consensus 25 e~rr~mN~l~~~DlVP~P-~ii~aaLrAcRRvND~alAVR~lE 66 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEP-KVIEAALRACRRVNDFALAVRILE 66 (103)
T ss_pred HHHHHHHHHhccccCCCc-HHHHHHHHHHHHhhhHHHHHHHHH
Confidence 444445555555666663 445666666666666666666665
No 267
>PLN02789 farnesyltranstransferase
Probab=38.25 E-value=3.6e+02 Score=25.67 Aligned_cols=44 Identities=9% Similarity=0.098 Sum_probs=18.8
Q ss_pred hHHHHHHHHHHHCCCCCChHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 047178 197 ERLIKLFKGLEAFDRKPPEKSIVQRVADAYEVLGLLEEKERVLEKY 242 (287)
Q Consensus 197 eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~G~leeA~~ll~~m 242 (287)
++++++++.|.+.. |+....|+-.--++...|.++++.+.++++
T Consensus 125 ~~el~~~~kal~~d--pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~ 168 (320)
T PLN02789 125 NKELEFTRKILSLD--AKNYHAWSHRQWVLRTLGGWEDELEYCHQL 168 (320)
T ss_pred HHHHHHHHHHHHhC--cccHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 34455554444332 222233333333444445555555444443
No 268
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=37.88 E-value=2.7e+02 Score=24.15 Aligned_cols=54 Identities=26% Similarity=0.271 Sum_probs=26.8
Q ss_pred HHHcCCHHHHHHHHHHhhhCCCCCCCh--hhHHHHHHHHHHcCCHhHHHHHHHHHHH
Q 047178 154 LDMDHRAEEAHKFWEKRIGIDLHSVPW--QLCKSMIAIYYRNNMLERLIKLFKGLEA 208 (287)
Q Consensus 154 y~K~G~leeA~~lF~eM~~~g~~sv~~--~tyNsmIsgY~k~G~~eeA~~Lf~eM~~ 208 (287)
+...|+.++|.+.|+++....-.+ +. ...=.+..+|.+.|++++|...|++...
T Consensus 15 ~~~~g~y~~Ai~~f~~l~~~~P~s-~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~ 70 (203)
T PF13525_consen 15 ALQQGDYEEAIKLFEKLIDRYPNS-PYAPQAQLMLAYAYYKQGDYEEAIAAYERFIK 70 (203)
T ss_dssp HHHCT-HHHHHHHHHHHHHH-TTS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCC-hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344566666666666665432111 11 1223355566666666666666666543
No 269
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=37.55 E-value=3.9e+02 Score=25.90 Aligned_cols=97 Identities=13% Similarity=0.084 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHccchhhHHHHHHHHHHCCCCCChhHHHHHHHHHH-HcCCHHHHHHHHHHhhh---CC-CCCCChhhH
Q 047178 109 VGSLKKALLALEKEQQWHRVVQVIKWMLSKGQGSTMGTCGQLIRALD-MDHRAEEAHKFWEKRIG---ID-LHSVPWQLC 183 (287)
Q Consensus 109 ~~s~~~ai~~L~k~~~~~~A~qv~~~M~~~G~~pd~~TYnaLI~~y~-K~G~leeA~~lF~eM~~---~g-~~sv~~~ty 183 (287)
...+-+-+..|.+.|.|+-|+++.+-+.+....-|..----+|+.|+ +++..+--.++.+.... +. ....|...|
T Consensus 103 flal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~ 182 (360)
T PF04910_consen 103 FLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAF 182 (360)
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHH
Q ss_pred HHHHHHHHHcCC--------------HhHHHHHHHH
Q 047178 184 KSMIAIYYRNNM--------------LERLIKLFKG 205 (287)
Q Consensus 184 NsmIsgY~k~G~--------------~eeA~~Lf~e 205 (287)
+.-+.-|...+. .++|.+.+.+
T Consensus 183 S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~ 218 (360)
T PF04910_consen 183 SIALAYFRLEKEESSQSSAQSGRSENSESADEALQK 218 (360)
T ss_pred HHHHHHHHhcCccccccccccccccchhHHHHHHHH
No 270
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.54 E-value=2.7e+02 Score=27.87 Aligned_cols=115 Identities=6% Similarity=-0.082 Sum_probs=71.2
Q ss_pred chhhHHHHHHHHHHCCCCCChhH-HHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHcCCHhHHHHH
Q 047178 124 QWHRVVQVIKWMLSKGQGSTMGT-CGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNNMLERLIKL 202 (287)
Q Consensus 124 ~~~~A~qv~~~M~~~G~~pd~~T-YnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~G~~eeA~~L 202 (287)
...-|.++|.-.-+.+..-|.+. --++-..+.-.-++|+..-.+.....--. -.+++.|| +-.++|-.|.+.+|.++
T Consensus 338 HlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~-NdD~Fn~N-~AQAk~atgny~eaEel 415 (557)
T KOG3785|consen 338 HLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFT-NDDDFNLN-LAQAKLATGNYVEAEEL 415 (557)
T ss_pred HHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcchhhhH-HHHHHHHhcChHHHHHH
Confidence 34445565654444555544433 23344445555567777766666554221 12334466 67899999999999999
Q ss_pred HHHHHHCCCCCChHHHHH-HHHHHHHhcCCHHHHHHHHHHH
Q 047178 203 FKGLEAFDRKPPEKSIVQ-RVADAYEVLGLLEEKERVLEKY 242 (287)
Q Consensus 203 f~eM~~~Gi~PD~~~Ty~-sLI~a~~k~G~leeA~~ll~~m 242 (287)
|-....-.++-+ .+|. .|..+|.+.+..+-|-.++-++
T Consensus 416 f~~is~~~ikn~--~~Y~s~LArCyi~nkkP~lAW~~~lk~ 454 (557)
T KOG3785|consen 416 FIRISGPEIKNK--ILYKSMLARCYIRNKKPQLAWDMMLKT 454 (557)
T ss_pred HhhhcChhhhhh--HHHHHHHHHHHHhcCCchHHHHHHHhc
Confidence 977766666644 4555 4556788888888887776543
No 271
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=37.52 E-value=1.1e+02 Score=22.28 Aligned_cols=77 Identities=13% Similarity=0.120 Sum_probs=41.4
Q ss_pred HHHHHHHHHCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHcCCHhHHHHHHHHHHH
Q 047178 129 VQVIKWMLSKGQGSTMGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNNMLERLIKLFKGLEA 208 (287)
Q Consensus 129 ~qv~~~M~~~G~~pd~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~G~~eeA~~Lf~eM~~ 208 (287)
.++++++.+.|...+. .++.+...+..|+++-+..+++.-...+. .+..-++.|.. -+..|. .++++-+.+
T Consensus 10 ~~~~~~ll~~~~~~~~--~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~--~~~~g~t~L~~-A~~~~~----~~~~~~Ll~ 80 (89)
T PF12796_consen 10 LEILKFLLEKGADINL--GNTALHYAAENGNLEIVKLLLENGADINS--QDKNGNTALHY-AAENGN----LEIVKLLLE 80 (89)
T ss_dssp HHHHHHHHHTTSTTTS--SSBHHHHHHHTTTHHHHHHHHHTTTCTT---BSTTSSBHHHH-HHHTTH----HHHHHHHHH
T ss_pred HHHHHHHHHCcCCCCC--CCCHHHHHHHcCCHHHHHHHHHhcccccc--cCCCCCCHHHH-HHHcCC----HHHHHHHHH
Confidence 3566777777765554 33466666788887766666653221111 11112444444 345554 445566667
Q ss_pred CCCCCC
Q 047178 209 FDRKPP 214 (287)
Q Consensus 209 ~Gi~PD 214 (287)
.|+.||
T Consensus 81 ~g~~~~ 86 (89)
T PF12796_consen 81 HGADVN 86 (89)
T ss_dssp TTT-TT
T ss_pred cCCCCC
Confidence 788776
No 272
>PF01335 DED: Death effector domain; InterPro: IPR001875 The death effector domain (DED) is a homotypic protein interaction module composed of a bundle of six alpha-helices. DED is related in sequence and structure to the death domain (DD, see IPR000488 from INTERPRO) and the caspase recruitment domain (CARD, see IPR001315 from INTERPRO), which work in similar pathways and show similar interaction properties []. The dimerisation of DED domains is mediated primarily by electrostatic interactions. DED domains can be found in isolation, or in combination with other domains. Domains associated with DED include: caspase catalytic domains (in caspase-8, -10), death domains (in FADD), nuclear localisation sequences (in DEDD), transmembrane domains (in Bap31 and Bar), nucleotide-binding domains (in Dap3), coiled-coil domains (in Hip and Hippi), SAM domains (in Bar), and E2-binding RING domains (in Bar) []. Several DED-containing proteins are involved in the regulation of apoptosis through their interactions with DED-containing caspases (IPR002398 from INTERPRO), such as caspases 8 and 10 in humans, both of which contain tandem pairs of DEDs. There are many DED-containing modulators of apoptosis, which can either enhance or inhibit caspase activation [].; GO: 0005515 protein binding, 0042981 regulation of apoptosis; PDB: 3CL3_A 2F1S_A 2BBZ_C 2BBR_A 1A1Z_A 2GF5_A 1A1W_A 1N3K_A.
Probab=37.50 E-value=1.1e+02 Score=22.98 Aligned_cols=40 Identities=18% Similarity=0.269 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHCC-CCCChHHHHHHHHHHHHhcCCHHHHHHHHH
Q 047178 198 RLIKLFKGLEAFD-RKPPEKSIVQRVADAYEVLGLLEEKERVLE 240 (287)
Q Consensus 198 eA~~Lf~eM~~~G-i~PD~~~Ty~sLI~a~~k~G~leeA~~ll~ 240 (287)
.+.++|..|+..| +.||. ...|.+.+...|+.+-+..+.+
T Consensus 38 ~~~dlf~~Le~~~~i~~~n---l~~L~~lL~~i~R~DL~~~i~~ 78 (84)
T PF01335_consen 38 SGLDLFEELEKRGLISPDN---LSLLKELLKRIGRPDLLKKIEE 78 (84)
T ss_dssp SHHHHHHHHHHTTSSSTTB---HHHHHHHHHHTT-HHHHHHHHH
T ss_pred hHHHHHHHHHHcCCCCCcc---HHHHHHHHHHhCHHHHHHHHHH
Confidence 3677777777776 45665 3566677777777777666653
No 273
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=37.46 E-value=89 Score=18.44 Aligned_cols=27 Identities=33% Similarity=0.378 Sum_probs=16.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhHH
Q 047178 219 VQRVADAYEVLGLLEEKERVLEKYKDL 245 (287)
Q Consensus 219 y~sLI~a~~k~G~leeA~~ll~~m~~l 245 (287)
|..+-..|...|++++|...+++..++
T Consensus 4 ~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 4 YYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 444555666677777777666655443
No 274
>COG2987 HutU Urocanate hydratase [Amino acid transport and metabolism]
Probab=37.32 E-value=25 Score=35.64 Aligned_cols=77 Identities=16% Similarity=0.202 Sum_probs=52.6
Q ss_pred HcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChHHHH----HHHHHHHHhcC-
Q 047178 156 MDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNNMLERLIKLFKGLEAFDRKPPEKSIV----QRVADAYEVLG- 230 (287)
Q Consensus 156 K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~G~~eeA~~Lf~eM~~~Gi~PD~~~Ty----~sLI~a~~k~G- 230 (287)
+...+|||.++-++-...+. +.+ -|..-.|.+++.+|.+.|+.|| ++|= --.+++|+-.|
T Consensus 215 ~a~~ldeAl~~a~~~~~ag~-p~S-------------Igl~GNaaei~~~l~~r~~~pD-~vtDQTsaHdp~~GY~P~G~ 279 (561)
T COG2987 215 IAETLDEALALAEEATAAGE-PIS-------------IGLLGNAAEILPELLRRGIRPD-LVTDQTSAHDPLNGYLPVGY 279 (561)
T ss_pred hcCCHHHHHHHHHHHHhcCC-ceE-------------EEEeccHHHHHHHHHHcCCCCc-eecccccccCcccCcCCCcC
Confidence 45678899888888766653 211 2445568999999999999998 4542 23567788887
Q ss_pred CHHHHHHHHHHHhHHHh
Q 047178 231 LLEEKERVLEKYKDLFT 247 (287)
Q Consensus 231 ~leeA~~ll~~m~~l~~ 247 (287)
.++++.++..+=++.|-
T Consensus 280 s~ee~~~lr~~d~~~~~ 296 (561)
T COG2987 280 TVEEADELREEDPDKYR 296 (561)
T ss_pred CHHHHHHHHhhCHHHHH
Confidence 47788777664343333
No 275
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=37.24 E-value=41 Score=19.61 Aligned_cols=21 Identities=24% Similarity=0.422 Sum_probs=13.3
Q ss_pred HHHHHcCCHhHHHHHHHHHHH
Q 047178 188 AIYYRNNMLERLIKLFKGLEA 208 (287)
Q Consensus 188 sgY~k~G~~eeA~~Lf~eM~~ 208 (287)
.+|.+.|+.++|.+.|+++..
T Consensus 8 ~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 8 RCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHH
Confidence 345566677777777766654
No 276
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=35.72 E-value=84 Score=23.09 Aligned_cols=49 Identities=12% Similarity=0.135 Sum_probs=30.3
Q ss_pred CChhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHH
Q 047178 142 STMGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYR 192 (287)
Q Consensus 142 pd~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k 192 (287)
|+...++.|++.+++..-++++...+++....|. ++.-+|---+..+++
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~--I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS--IDLDTFLKQVRSLAR 54 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS--S-HHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHH
Confidence 4556677777777777777777777777777664 332345555555544
No 277
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=35.54 E-value=66 Score=30.83 Aligned_cols=38 Identities=11% Similarity=0.064 Sum_probs=28.3
Q ss_pred CCCCChHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHHh
Q 047178 210 DRKPPEKSIVQRVADAYEVLGLLEEKERVLEKYKDLFT 247 (287)
Q Consensus 210 Gi~PD~~~Ty~sLI~a~~k~G~leeA~~ll~~m~~l~~ 247 (287)
-+.||.-..|+.-|..-.+.|++++|+.|++|...|-.
T Consensus 251 ~v~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~ 288 (303)
T PRK10564 251 PMLNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGS 288 (303)
T ss_pred ccCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 45567666777888888888888888888887776644
No 278
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=35.25 E-value=2.1e+02 Score=29.88 Aligned_cols=91 Identities=10% Similarity=0.076 Sum_probs=69.3
Q ss_pred CHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChHHHHHHHHHHHHhcCCHHHHHHH
Q 047178 159 RAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNNMLERLIKLFKGLEAFDRKPPEKSIVQRVADAYEVLGLLEEKERV 238 (287)
Q Consensus 159 ~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~G~leeA~~l 238 (287)
.+.+..++|-++....-...+.-.++.|=-.|.-.|.+++|+.-|+.-.. ++|++..+||-|--.++...+-++|..-
T Consensus 409 ~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~--v~Pnd~~lWNRLGAtLAN~~~s~EAIsA 486 (579)
T KOG1125|consen 409 HLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQ--VKPNDYLLWNRLGATLANGNRSEEAISA 486 (579)
T ss_pred HHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHh--cCCchHHHHHHhhHHhcCCcccHHHHHH
Confidence 45566778888764321012222356666667788999999999998654 6898889999999999999999999999
Q ss_pred HHHHhHHHhhhhc
Q 047178 239 LEKYKDLFTEKEK 251 (287)
Q Consensus 239 l~~m~~l~~~~~~ 251 (287)
+.+..+|+=+|.+
T Consensus 487 Y~rALqLqP~yVR 499 (579)
T KOG1125|consen 487 YNRALQLQPGYVR 499 (579)
T ss_pred HHHHHhcCCCeee
Confidence 9988888877764
No 279
>PF07827 KNTase_C: KNTase C-terminal domain; InterPro: IPR012481 Kanamycin nucleotidyltransferase (KNTase) is involved in conferring resistance to aminoglycoside antibiotics and catalyses the transfer of a nucleoside monophosphate group from a nucleotide to kanamycin. This enzyme is dimeric with each subunit being composed of two domains. The C-terminal domain contains five alpha helices, four of which are organised into an up-and-down alpha helical bundle. Residues found in this domain may contribute to this enzyme's active site []. ; GO: 0016779 nucleotidyltransferase activity, 0046677 response to antibiotic; PDB: 1KNY_A.
Probab=35.23 E-value=1.1e+02 Score=26.28 Aligned_cols=65 Identities=14% Similarity=0.227 Sum_probs=43.3
Q ss_pred hHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHHhhhh
Q 047178 182 LCKSMIAIYYRNNMLERLIKLFKGLEAFDRKPPEKSIVQRVADAYEVLGLLEEKERVLEKYKDLFTEKE 250 (287)
Q Consensus 182 tyNsmIsgY~k~G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~G~leeA~~ll~~m~~l~~~~~ 250 (287)
.|.+||-|+...-.+.---.++.|-.+.-=.|+. |.-|+ -+...|++.++..|++....+.+++-
T Consensus 61 ~~~AmliGL~Nr~~ytT~a~~l~Eal~Lp~rP~G---yd~l~-~lvm~G~L~d~~~i~~~cE~~W~Gl~ 125 (143)
T PF07827_consen 61 WYGAMLIGLHNRTLYTTSARVLPEALSLPSRPSG---YDELA-QLVMSGQLTDPEKIYESCEALWTGLV 125 (143)
T ss_dssp HHHHHHHHHHCT---SSCCCHHHHHTTSSS--TT---HHHHH-HHHHHTB---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccceeeccccccHHHhcCCCCCcc---HHHHH-HHHhccccCCHHHHHHHHHHHHHHHH
Confidence 4888999988777776666667776666667775 67666 46688999999999998888887765
No 280
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=35.21 E-value=71 Score=30.62 Aligned_cols=33 Identities=12% Similarity=0.213 Sum_probs=30.4
Q ss_pred hhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCC
Q 047178 181 QLCKSMIAIYYRNNMLERLIKLFKGLEAFDRKP 213 (287)
Q Consensus 181 ~tyNsmIsgY~k~G~~eeA~~Lf~eM~~~Gi~P 213 (287)
..||..|..-.+.|++++|+.|++|-++.|+.-
T Consensus 258 ~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~ 290 (303)
T PRK10564 258 SYFNQAIKQAVKKGDVDKALKLLDEAERLGSTS 290 (303)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCch
Confidence 359999999999999999999999999999864
No 281
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=34.11 E-value=4.8e+02 Score=29.48 Aligned_cols=60 Identities=15% Similarity=0.045 Sum_probs=40.9
Q ss_pred hhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChHHHHHHHHH--HHHhcCCHHHHHHHHHHHhH
Q 047178 181 QLCKSMIAIYYRNNMLERLIKLFKGLEAFDRKPPEKSIVQRVAD--AYEVLGLLEEKERVLEKYKD 244 (287)
Q Consensus 181 ~tyNsmIsgY~k~G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~--a~~k~G~leeA~~ll~~m~~ 244 (287)
..|-.+..+|-..|++.-|+++|..- .-+.|++ +|.-.-. .-|-.|...++...+.+...
T Consensus 597 n~W~gLGeAY~~sGry~~AlKvF~kA--s~LrP~s--~y~~fk~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 597 NLWLGLGEAYPESGRYSHALKVFTKA--SLLRPLS--KYGRFKEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred HHHHHHHHHHHhcCceehHHHhhhhh--HhcCcHh--HHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 46888899999999999999999764 3467764 3443222 25667777777766654433
No 282
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=34.10 E-value=2.7e+02 Score=31.24 Aligned_cols=118 Identities=11% Similarity=0.067 Sum_probs=77.4
Q ss_pred HHccchhhHHHHHHHHHHCCCC-CChhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHH--HHHHcCCH
Q 047178 120 EKEQQWHRVVQVIKWMLSKGQG-STMGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIA--IYYRNNML 196 (287)
Q Consensus 120 ~k~~~~~~A~qv~~~M~~~G~~-pd~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIs--gY~k~G~~ 196 (287)
+...+..+|.+.|..-.+ +. .|....-++.+.|+....+++|..+.-.-.++... -...||-.=. .|-..+++
T Consensus 503 rd~~Dm~RA~kCf~KAFe--LDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a--~~~k~nW~~rG~yyLea~n~ 578 (1238)
T KOG1127|consen 503 RDSDDMKRAKKCFDKAFE--LDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPA--FACKENWVQRGPYYLEAHNL 578 (1238)
T ss_pred HHHHHHHHHHHHHHHHhc--CCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchH--HHHHhhhhhccccccCccch
Confidence 333344455555554433 22 24556788899999999999999884433332210 0012333322 25578889
Q ss_pred hHHHHHHHHHHHCCCCCChHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 047178 197 ERLIKLFKGLEAFDRKPPEKSIVQRVADAYEVLGLLEEKERVLEKYK 243 (287)
Q Consensus 197 eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~G~leeA~~ll~~m~ 243 (287)
.+|+.-|+.-.. +-|.++-.+..+..+|...|....|.++|.+..
T Consensus 579 h~aV~~fQsALR--~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs 623 (1238)
T KOG1127|consen 579 HGAVCEFQSALR--TDPKDYNLWLGLGEAYPESGRYSHALKVFTKAS 623 (1238)
T ss_pred hhHHHHHHHHhc--CCchhHHHHHHHHHHHHhcCceehHHHhhhhhH
Confidence 999999987554 456666778888999999999999999997543
No 283
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=33.96 E-value=57 Score=23.43 Aligned_cols=25 Identities=24% Similarity=0.121 Sum_probs=20.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhhh
Q 047178 148 GQLIRALDMDHRAEEAHKFWEKRIG 172 (287)
Q Consensus 148 naLI~~y~K~G~leeA~~lF~eM~~ 172 (287)
=.+|.||...|+.++|.+...++..
T Consensus 27 LqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 27 LQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3579999999999999999888754
No 284
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=33.24 E-value=77 Score=16.69 Aligned_cols=26 Identities=4% Similarity=0.086 Sum_probs=18.1
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHH
Q 047178 183 CKSMIAIYYRNNMLERLIKLFKGLEA 208 (287)
Q Consensus 183 yNsmIsgY~k~G~~eeA~~Lf~eM~~ 208 (287)
|..+-..|...|++++|...|..-..
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 55666677777777888777766543
No 285
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=32.13 E-value=1.3e+02 Score=32.28 Aligned_cols=91 Identities=13% Similarity=0.129 Sum_probs=57.0
Q ss_pred CChhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCCh----------hhHHHHHHHHHHcCC--HhHHHHHHHHHHHC
Q 047178 142 STMGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPW----------QLCKSMIAIYYRNNM--LERLIKLFKGLEAF 209 (287)
Q Consensus 142 pd~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~----------~tyNsmIsgY~k~G~--~eeA~~Lf~eM~~~ 209 (287)
+..+.|++=+-.|-..|.+++|..+- ..|+...+| .-+++-=.+|.+..+ +-+.+.-+++|...
T Consensus 554 ~~evp~~~~m~q~Ieag~f~ea~~ia----clgVv~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~r 629 (1081)
T KOG1538|consen 554 AVEVPQSAPMYQYIERGLFKEAYQIA----CLGVTDTDWRELAMEALEALDFETARKAYIRVRDLRYLELISELEERKKR 629 (1081)
T ss_pred cccccccccchhhhhccchhhhhccc----ccceecchHHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhc
Confidence 44455666777777888888886541 112111111 125666677776554 34555567788888
Q ss_pred CCCCChHHHHHHHHHHHHhcCCHHHHHHHHH
Q 047178 210 DRKPPEKSIVQRVADAYEVLGLLEEKERVLE 240 (287)
Q Consensus 210 Gi~PD~~~Ty~sLI~a~~k~G~leeA~~ll~ 240 (287)
|-.||+ + .+.+.|+-.|.+.||-++|.
T Consensus 630 ge~P~~-i---LlA~~~Ay~gKF~EAAklFk 656 (1081)
T KOG1538|consen 630 GETPND-L---LLADVFAYQGKFHEAAKLFK 656 (1081)
T ss_pred CCCchH-H---HHHHHHHhhhhHHHHHHHHH
Confidence 988986 3 34456777788888888876
No 286
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=31.78 E-value=6.2e+02 Score=27.32 Aligned_cols=99 Identities=19% Similarity=0.276 Sum_probs=57.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCCh--hhHHHHHHHHHHcCCHhHHHHHHHHHHHC----------CCCCC
Q 047178 147 CGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPW--QLCKSMIAIYYRNNMLERLIKLFKGLEAF----------DRKPP 214 (287)
Q Consensus 147 YnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~--~tyNsmIsgY~k~G~~eeA~~Lf~eM~~~----------Gi~PD 214 (287)
|-.+-+.|-..|.++.|..+|++-..-....+.. .+|-.--..=.++.+++.|++++++-..- |-.|-
T Consensus 390 w~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pv 469 (835)
T KOG2047|consen 390 WVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPV 469 (835)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcH
Confidence 4556666778999999999999976544322221 12222223344667788888877654211 11121
Q ss_pred hHH------HHHHHHHHHHhcCCHHHHHHHHHHHhHH
Q 047178 215 EKS------IVQRVADAYEVLGLLEEKERVLEKYKDL 245 (287)
Q Consensus 215 ~~~------Ty~sLI~a~~k~G~leeA~~ll~~m~~l 245 (287)
... .|+..++--...|-++..+.+.+.+.+|
T Consensus 470 Q~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidL 506 (835)
T KOG2047|consen 470 QARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDL 506 (835)
T ss_pred HHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 112 2444555555667777777777766554
No 287
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=31.20 E-value=3.3e+02 Score=23.20 Aligned_cols=96 Identities=10% Similarity=-0.043 Sum_probs=63.5
Q ss_pred HHHHHCCCCCChhH--HHHHHHHHHHcCCHHHHHHHHHHhhhCCC---C-CCChhhHHHHHHHHHHcCC-HhHHHHHHHH
Q 047178 133 KWMLSKGQGSTMGT--CGQLIRALDMDHRAEEAHKFWEKRIGIDL---H-SVPWQLCKSMIAIYYRNNM-LERLIKLFKG 205 (287)
Q Consensus 133 ~~M~~~G~~pd~~T--YnaLI~~y~K~G~leeA~~lF~eM~~~g~---~-sv~~~tyNsmIsgY~k~G~-~eeA~~Lf~e 205 (287)
..|.+.+..+++.+ .|.+|+=+...+.+.-...+++.+.--.. . ..+..+|++++.+..+..- ---+..+|.-
T Consensus 26 ~y~~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~ 105 (145)
T PF13762_consen 26 PYMQEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNF 105 (145)
T ss_pred HHhhhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHH
Confidence 44555666665543 57788777777777777776666632110 0 0122358999998877766 4567889999
Q ss_pred HHHCCCCCChHHHHHHHHHHHHhc
Q 047178 206 LEAFDRKPPEKSIVQRVADAYEVL 229 (287)
Q Consensus 206 M~~~Gi~PD~~~Ty~sLI~a~~k~ 229 (287)
|.+.+.++.. .-|..+|.++-+.
T Consensus 106 Lk~~~~~~t~-~dy~~li~~~l~g 128 (145)
T PF13762_consen 106 LKKNDIEFTP-SDYSCLIKAALRG 128 (145)
T ss_pred HHHcCCCCCH-HHHHHHHHHHHcC
Confidence 9987777763 6689999877654
No 288
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=30.80 E-value=3e+02 Score=25.72 Aligned_cols=68 Identities=18% Similarity=0.230 Sum_probs=50.3
Q ss_pred ChhhHHHHHHHHHHcCCHhHHHHHHHHHHHCC-CCCChHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHHh
Q 047178 179 PWQLCKSMIAIYYRNNMLERLIKLFKGLEAFD-RKPPEKSIVQRVADAYEVLGLLEEKERVLEKYKDLFT 247 (287)
Q Consensus 179 ~~~tyNsmIsgY~k~G~~eeA~~Lf~eM~~~G-i~PD~~~Ty~sLI~a~~k~G~leeA~~ll~~m~~l~~ 247 (287)
+...|+.-+.-+ +.|++++|.+-|+.+...- ..|=.--+--.++-++-+.++.++|....++++.+|-
T Consensus 34 ~~~LY~~g~~~L-~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP 102 (254)
T COG4105 34 ASELYNEGLTEL-QKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYP 102 (254)
T ss_pred HHHHHHHHHHHH-hcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC
Confidence 345688777655 8899999999999998642 2221113345667788899999999999998887763
No 289
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=30.54 E-value=1.5e+02 Score=24.61 Aligned_cols=44 Identities=2% Similarity=0.070 Sum_probs=31.9
Q ss_pred HHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHcCCHhHHHHHHH
Q 047178 161 EEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNNMLERLIKLFK 204 (287)
Q Consensus 161 eeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~G~~eeA~~Lf~ 204 (287)
+++.++|.-|..+++..--...|-.-=.-+-..|++.+|.++|+
T Consensus 80 ~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 80 DEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 55788899998887642222356666666778899999998885
No 290
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=30.19 E-value=1.5e+02 Score=20.13 Aligned_cols=32 Identities=6% Similarity=0.118 Sum_probs=21.1
Q ss_pred HHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHH
Q 047178 155 DMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMI 187 (287)
Q Consensus 155 ~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmI 187 (287)
-+.|-++++..++++|...|+- .++..|+.++
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~-is~~l~~~~L 44 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFR-ISPKLIEEIL 44 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcc-cCHHHHHHHH
Confidence 3567777888888888877764 4544454443
No 291
>cd08812 CARD_RIG-I_like Caspase activation and recruitment domains found in RIG-I-like DEAD box helicases. Caspase activation and recruitment domains (CARDs) found in Retinoic acid Inducible Gene I (RIG-I)-like DEAD box helicases. These helicases, including MDA5 and RIG-I, contain two N-terminal CARD domains and a C-terminal DEAD box RNA helicase domain. They are cytoplasmic RNA helicases that play an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, RIG-I and MDA5 have been shown to recognize different sets of viruses. MDA5 and RIG-I associate with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mec
Probab=29.92 E-value=1.5e+02 Score=22.90 Aligned_cols=37 Identities=8% Similarity=0.114 Sum_probs=21.6
Q ss_pred CCHHHHHHHHHHhhh-CCCCCCChhhHHHHHHHHHHcCCHhHH
Q 047178 158 HRAEEAHKFWEKRIG-IDLHSVPWQLCKSMIAIYYRNNMLERL 199 (287)
Q Consensus 158 G~leeA~~lF~eM~~-~g~~sv~~~tyNsmIsgY~k~G~~eeA 199 (287)
|+.+.|..+++.+.. ++ +.| |.++|+++-+.|..+-|
T Consensus 48 g~~~aa~~Ll~~L~~~r~---~~w--f~~Fl~AL~~~g~~~la 85 (88)
T cd08812 48 GNIAAAEELLDRLERCDK---PGW--FQAFLDALRRTGNDDLA 85 (88)
T ss_pred ChHHHHHHHHHHHHHhcc---CCc--HHHHHHHHHHcCCccHH
Confidence 666666666666654 32 334 56666666666654433
No 292
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.65 E-value=6.6e+02 Score=26.91 Aligned_cols=98 Identities=17% Similarity=0.031 Sum_probs=62.1
Q ss_pred HccchhhHHHHHHHHHHCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHcCCHhHHH
Q 047178 121 KEQQWHRVVQVIKWMLSKGQGSTMGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNNMLERLI 200 (287)
Q Consensus 121 k~~~~~~A~qv~~~M~~~G~~pd~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~G~~eeA~ 200 (287)
+.|+.+.|.++..+. -+..-|..|=++..+.|.+..|.+.|..-. + |..|+-.|.-.|+.+-..
T Consensus 649 ~lgrl~iA~~la~e~------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~--d--------~~~LlLl~t~~g~~~~l~ 712 (794)
T KOG0276|consen 649 KLGRLDIAFDLAVEA------NSEVKWRQLGDAALSAGELPLASECFLRAR--D--------LGSLLLLYTSSGNAEGLA 712 (794)
T ss_pred hcCcHHHHHHHHHhh------cchHHHHHHHHHHhhcccchhHHHHHHhhc--c--------hhhhhhhhhhcCChhHHH
Confidence 445555554443321 344568888888888888888888877532 2 566777777777776666
Q ss_pred HHHHHHHHCCCCCChHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 047178 201 KLFKGLEAFDRKPPEKSIVQRVADAYEVLGLLEEKERVLEK 241 (287)
Q Consensus 201 ~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~G~leeA~~ll~~ 241 (287)
.+-..-.+.|.. |. . | -+|...|+++++.+++.+
T Consensus 713 ~la~~~~~~g~~-N~-A-F----~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 713 VLASLAKKQGKN-NL-A-F----LAYFLSGDYEECLELLIS 746 (794)
T ss_pred HHHHHHHhhccc-ch-H-H----HHHHHcCCHHHHHHHHHh
Confidence 666666666642 31 2 2 256667888888887764
No 293
>cd08789 CARD_IPS-1_RIG-I Caspase activation and recruitment domains (CARDs) found in IPS-1 and RIG-I-like RNA helicases. Caspase activation and recruitment domains (CARDs) found in IPS-1 (Interferon beta promoter stimulator protein 1) and Retinoic acid Inducible Gene I (RIG-I)-like DEAD box helicases. RIG-I-like helicases and IPS-1 play important roles in the induction of interferons in response to viral infection. They are crucial in triggering innate immunity and in developing adaptive immunity against viral pathogens. RIG-I-like helicases, including MDA5 and RIG-I, contain two N-terminal CARD domains and a C-terminal DEAD box RNA helicase domain. They are cytoplasmic RNA helicases that play an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. MDA5 and RIG-I associate with IPS-1 through a CARD-CAR
Probab=29.26 E-value=1.5e+02 Score=22.73 Aligned_cols=38 Identities=5% Similarity=0.073 Sum_probs=20.1
Q ss_pred HcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHcCCHhHH
Q 047178 156 MDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNNMLERL 199 (287)
Q Consensus 156 K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~G~~eeA 199 (287)
..|+.+.|..+++.+. ++ +.| |..+++++-..|..+-|
T Consensus 44 ~~G~~~aa~~Ll~~L~-r~---~~W--f~~Fl~AL~~~~~~~LA 81 (84)
T cd08789 44 NSGNIKAAWTLLDTLV-RR---DNW--LEPFLDALRECGLGHLA 81 (84)
T ss_pred cCChHHHHHHHHHHHh-cc---CCh--HHHHHHHHHHcCCHHHH
Confidence 3455556666666555 22 233 55556666555554444
No 294
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=28.91 E-value=3.9e+02 Score=23.26 Aligned_cols=105 Identities=9% Similarity=0.020 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHccchhhHHHHHHHHHHCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHH
Q 047178 111 SLKKALLALEKEQQWHRVVQVIKWMLSKGQGSTMGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIY 190 (287)
Q Consensus 111 s~~~ai~~L~k~~~~~~A~qv~~~M~~~G~~pd~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY 190 (287)
-..-++..|.+.+++.... .++..++-+|...--.++-.+. +....|.++=-.|..+=- ..|..++..+
T Consensus 31 L~~lli~lLi~~~~~~~L~----qllq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkRL~-----~~~~~iievL 99 (167)
T PF07035_consen 31 LYELLIDLLIRNGQFSQLH----QLLQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKRLG-----TAYEEIIEVL 99 (167)
T ss_pred HHHHHHHHHHHcCCHHHHH----HHHhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHHhh-----hhHHHHHHHH
Confidence 3445566666666655432 3344455555544333332222 222344444444544310 1267788888
Q ss_pred HHcCCHhHHHHHHHHHHHCCCCCChHHHHHHHHHHHHhcCC
Q 047178 191 YRNNMLERLIKLFKGLEAFDRKPPEKSIVQRVADAYEVLGL 231 (287)
Q Consensus 191 ~k~G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~G~ 231 (287)
-..|++-+|+++.+......- ++ ...++.+-.+.++
T Consensus 100 L~~g~vl~ALr~ar~~~~~~~-~~----~~~fLeAA~~~~D 135 (167)
T PF07035_consen 100 LSKGQVLEALRYARQYHKVDS-VP----ARKFLEAAANSND 135 (167)
T ss_pred HhCCCHHHHHHHHHHcCCccc-CC----HHHHHHHHHHcCC
Confidence 899999999988876422211 11 2456666666665
No 295
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.85 E-value=8.2e+02 Score=27.03 Aligned_cols=111 Identities=18% Similarity=0.223 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHccchhhHHHHHHHHHHCCCCCChhHHHHHHHH----HHHcCCHHHHHHHHHHhhhCCCCCCChhhHHH
Q 047178 110 GSLKKALLALEKEQQWHRVVQVIKWMLSKGQGSTMGTCGQLIRA----LDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKS 185 (287)
Q Consensus 110 ~s~~~ai~~L~k~~~~~~A~qv~~~M~~~G~~pd~~TYnaLI~~----y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNs 185 (287)
-++..-+..|++...+.-|+.+-+. .+..+| +---+... |.+.|+.++|..-+-+-... + -| ..
T Consensus 335 k~le~kL~iL~kK~ly~~Ai~LAk~---~~~d~d--~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-l--e~----s~ 402 (933)
T KOG2114|consen 335 KDLETKLDILFKKNLYKVAINLAKS---QHLDED--TLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-L--EP----SE 402 (933)
T ss_pred ccHHHHHHHHHHhhhHHHHHHHHHh---cCCCHH--HHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-C--Ch----HH
Confidence 3556778888888888888776543 333333 22222222 34677888887655543321 1 11 33
Q ss_pred HHHHHHHcCCHhHHHHHHHHHHHCCCCCChHHHHHHHHHHHHhcCCHHH
Q 047178 186 MIAIYYRNNMLERLIKLFKGLEAFDRKPPEKSIVQRVADAYEVLGLLEE 234 (287)
Q Consensus 186 mIsgY~k~G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~G~lee 234 (287)
+|.-|-..-++.+--..++.+.+.|+.--+ .| +.||.+|.+.++.+.
T Consensus 403 Vi~kfLdaq~IknLt~YLe~L~~~gla~~d-ht-tlLLncYiKlkd~~k 449 (933)
T KOG2114|consen 403 VIKKFLDAQRIKNLTSYLEALHKKGLANSD-HT-TLLLNCYIKLKDVEK 449 (933)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHcccccch-hH-HHHHHHHHHhcchHH
Confidence 455555555555555555555555554322 22 455555555555433
No 296
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=28.62 E-value=1.5e+02 Score=23.00 Aligned_cols=48 Identities=8% Similarity=-0.009 Sum_probs=37.6
Q ss_pred HcCCHhHHHHHHHHHHHCCCC-CChHHHHHHHHHHHHhcCCHHHHHHHH
Q 047178 192 RNNMLERLIKLFKGLEAFDRK-PPEKSIVQRVADAYEVLGLLEEKERVL 239 (287)
Q Consensus 192 k~G~~eeA~~Lf~eM~~~Gi~-PD~~~Ty~sLI~a~~k~G~leeA~~ll 239 (287)
.....++|+..+..-.+.-.. ||...++..++.+|+..|++.++...-
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788899888887765443 455567889999999999999988764
No 297
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.59 E-value=6.9e+02 Score=26.03 Aligned_cols=130 Identities=14% Similarity=0.058 Sum_probs=78.6
Q ss_pred HHHHHHHHHHccchhhHHHHHHHHHHCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHH
Q 047178 112 LKKALLALEKEQQWHRVVQVIKWMLSKGQGSTMGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYY 191 (287)
Q Consensus 112 ~~~ai~~L~k~~~~~~A~qv~~~M~~~G~~pd~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~ 191 (287)
+...-..+....+-.+..+.|..-.+..- -|.-+|--==.++.-.+++++|..=|++-..-+ +-..+.|--+=-+..
T Consensus 363 yI~~a~~y~d~~~~~~~~~~F~~A~~ldp-~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~--pe~~~~~iQl~~a~Y 439 (606)
T KOG0547|consen 363 YIKRAAAYADENQSEKMWKDFNKAEDLDP-ENPDVYYHRGQMRFLLQQYEEAIADFQKAISLD--PENAYAYIQLCCALY 439 (606)
T ss_pred HHHHHHHHhhhhccHHHHHHHHHHHhcCC-CCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcC--hhhhHHHHHHHHHHH
Confidence 44444455666666666677766544321 123344222222333466788888888876543 112234555555666
Q ss_pred HcCCHhHHHHHHHHHHHCCCCCChHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHH
Q 047178 192 RNNMLERLIKLFKGLEAFDRKPPEKSIVQRVADAYEVLGLLEEKERVLEKYKDLF 246 (287)
Q Consensus 192 k~G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~G~leeA~~ll~~m~~l~ 246 (287)
|.++++++...|++-... .|+..-.|+-.-..+...++++.|.+-++..+.|-
T Consensus 440 r~~k~~~~m~~Fee~kkk--FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE 492 (606)
T KOG0547|consen 440 RQHKIAESMKTFEEAKKK--FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELE 492 (606)
T ss_pred HHHHHHHHHHHHHHHHHh--CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhc
Confidence 788888888888887754 23333447777777888888888888887766553
No 298
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=28.49 E-value=2.1e+02 Score=24.78 Aligned_cols=57 Identities=23% Similarity=0.148 Sum_probs=46.2
Q ss_pred HHHHcCCHhHHHHHHHHHHHCCCCCChHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHHh
Q 047178 189 IYYRNNMLERLIKLFKGLEAFDRKPPEKSIVQRVADAYEVLGLLEEKERVLEKYKDLFT 247 (287)
Q Consensus 189 gY~k~G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~G~leeA~~ll~~m~~l~~ 247 (287)
++...|.++.|+++|..-.. +.|...+.||--..++.-.|+.++|+.=+++..+|-.
T Consensus 52 alaE~g~Ld~AlE~F~qal~--l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag 108 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALC--LAPERASAYNNRAQALRLQGDDEEALDDLNKALELAG 108 (175)
T ss_pred HHHhccchHHHHHHHHHHHH--hcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcC
Confidence 46789999999999998665 3454457799999999999999999988887766644
No 299
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=28.41 E-value=2.4e+02 Score=23.31 Aligned_cols=80 Identities=9% Similarity=0.031 Sum_probs=48.4
Q ss_pred chhhHHHHHHHHHHCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHcCCHhHHHHHH
Q 047178 124 QWHRVVQVIKWMLSKGQGSTMGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNNMLERLIKLF 203 (287)
Q Consensus 124 ~~~~A~qv~~~M~~~G~~pd~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~G~~eeA~~Lf 203 (287)
..++|..+.+|+...|..-. ++--+-+..+...|+.++|. ..... ...++...|-+| +=.|.|..+++...|
T Consensus 21 cH~EA~tIa~wL~~~~~~~E-~v~lIr~~sLmNrG~Yq~AL--l~~~~---~~~pdL~p~~AL--~a~klGL~~~~e~~l 92 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGEMEE-VVALIRLSSLMNRGDYQEAL--LLPQC---HCYPDLEPWAAL--CAWKLGLASALESRL 92 (116)
T ss_dssp -HHHHHHHHHHHHHTTTTHH-HHHHHHHHHHHHTT-HHHHH--HHHTT---S--GGGHHHHHH--HHHHCT-HHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCcHHH-HHHHHHHHHHHhhHHHHHHH--Hhccc---CCCccHHHHHHH--HHHhhccHHHHHHHH
Confidence 45678888889887765222 22233456688899999992 22221 112333445543 335999999999999
Q ss_pred HHHHHCCC
Q 047178 204 KGLEAFDR 211 (287)
Q Consensus 204 ~eM~~~Gi 211 (287)
.+|..+|=
T Consensus 93 ~rla~~g~ 100 (116)
T PF09477_consen 93 TRLASSGS 100 (116)
T ss_dssp HHHCT-SS
T ss_pred HHHHhCCC
Confidence 99988874
No 300
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=28.04 E-value=1.2e+02 Score=22.04 Aligned_cols=40 Identities=23% Similarity=0.135 Sum_probs=28.6
Q ss_pred HcCCHhHHHHHHHHHHHCCCCCChHHHHHHHHHHHHhcCCH
Q 047178 192 RNNMLERLIKLFKGLEAFDRKPPEKSIVQRVADAYEVLGLL 232 (287)
Q Consensus 192 k~G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~G~l 232 (287)
-.|+.+++.+++++....|+.|.. +....+..+..+.|..
T Consensus 13 ~~~d~~~~~~~~~~~l~~g~~~~~-i~~~~l~p~m~~iG~~ 52 (79)
T PF02607_consen 13 LAGDEEEAEALLEEALAQGYPPED-IIEEILMPAMEEIGEL 52 (79)
T ss_dssp HTT-CCHHHHHHHHHHHCSSSTTH-HHHHTHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHcCCCHHH-HHHHHHHHHHHHHHHH
Confidence 457788888888888888888874 5556677776666543
No 301
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=27.94 E-value=6.8e+02 Score=26.37 Aligned_cols=85 Identities=9% Similarity=0.028 Sum_probs=53.9
Q ss_pred HHCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCC------------CChhhHHHHHHHHHHcCCHhHHHHHH
Q 047178 136 LSKGQGSTMGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHS------------VPWQLCKSMIAIYYRNNMLERLIKLF 203 (287)
Q Consensus 136 ~~~G~~pd~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~s------------v~~~tyNsmIsgY~k~G~~eeA~~Lf 203 (287)
.+.|+..+......|+. .-.|.+..|..++++....+-.. .+......|++++. .|+..+++.++
T Consensus 197 ~~egi~ie~~AL~~La~--~s~GslR~al~lLdq~ia~~~~~It~~~V~~~Lg~~~~~~i~~LldaL~-~~d~~~al~~l 273 (618)
T PRK14951 197 AAENVPAEPQALRLLAR--AARGSMRDALSLTDQAIAFGSGQLQEAAVRQMLGSVDRSHVFRLIDALA-QGDGRTVVETA 273 (618)
T ss_pred HHcCCCCCHHHHHHHHH--HcCCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcCCCHHHHHHHHHHHH-cCCHHHHHHHH
Confidence 34677666655555555 23488999999888764332110 11112334555554 48999999999
Q ss_pred HHHHHCCCCCChHHHHHHHHHH
Q 047178 204 KGLEAFDRKPPEKSIVQRVADA 225 (287)
Q Consensus 204 ~eM~~~Gi~PD~~~Ty~sLI~a 225 (287)
++|...|..|.. ++..|+..
T Consensus 274 ~~l~~~G~~~~~--il~~l~~~ 293 (618)
T PRK14951 274 DELRLNGLSAAS--TLEEMAAV 293 (618)
T ss_pred HHHHHcCCCHHH--HHHHHHHH
Confidence 999999998863 34555443
No 302
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=27.20 E-value=1.4e+02 Score=17.41 Aligned_cols=22 Identities=23% Similarity=0.315 Sum_probs=11.6
Q ss_pred HHHHHHHcCCHhHHHHHHHHHH
Q 047178 186 MIAIYYRNNMLERLIKLFKGLE 207 (287)
Q Consensus 186 mIsgY~k~G~~eeA~~Lf~eM~ 207 (287)
|=..|.+.|++++|++.|++..
T Consensus 7 lg~~~~~~~~~~~A~~~~~~al 28 (34)
T PF07719_consen 7 LGQAYYQLGNYEEAIEYFEKAL 28 (34)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHH
Confidence 3344556666666666665543
No 303
>PHA02875 ankyrin repeat protein; Provisional
Probab=27.13 E-value=2.2e+02 Score=27.22 Aligned_cols=14 Identities=14% Similarity=-0.021 Sum_probs=6.0
Q ss_pred HHhcCCHHHHHHHH
Q 047178 226 YEVLGLLEEKERVL 239 (287)
Q Consensus 226 ~~k~G~leeA~~ll 239 (287)
.+..|..+-++.++
T Consensus 175 A~~~g~~eiv~~Ll 188 (413)
T PHA02875 175 AMAKGDIAICKMLL 188 (413)
T ss_pred HHHcCCHHHHHHHH
Confidence 33445444444433
No 304
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=26.89 E-value=5e+02 Score=28.10 Aligned_cols=76 Identities=17% Similarity=0.120 Sum_probs=46.3
Q ss_pred HHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChHHHHHH----------HH
Q 047178 154 LDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNNMLERLIKLFKGLEAFDRKPPEKSIVQR----------VA 223 (287)
Q Consensus 154 y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~s----------LI 223 (287)
+-+...+.-|-++|.+|... .+++......|++++|+.+-+...+ +.||...-|.- .-
T Consensus 757 lk~l~~~gLAaeIF~k~gD~----------ksiVqlHve~~~W~eAFalAe~hPe--~~~dVy~pyaqwLAE~DrFeEAq 824 (1081)
T KOG1538|consen 757 LKKLDSPGLAAEIFLKMGDL----------KSLVQLHVETQRWDEAFALAEKHPE--FKDDVYMPYAQWLAENDRFEEAQ 824 (1081)
T ss_pred HhhccccchHHHHHHHhccH----------HHHhhheeecccchHhHhhhhhCcc--ccccccchHHHHhhhhhhHHHHH
Confidence 33445566777888777431 3456666777888888877766543 34552122222 23
Q ss_pred HHHHhcCCHHHHHHHHHH
Q 047178 224 DAYEVLGLLEEKERVLEK 241 (287)
Q Consensus 224 ~a~~k~G~leeA~~ll~~ 241 (287)
.||-++|+-.||.+++++
T Consensus 825 kAfhkAGr~~EA~~vLeQ 842 (1081)
T KOG1538|consen 825 KAFHKAGRQREAVQVLEQ 842 (1081)
T ss_pred HHHHHhcchHHHHHHHHH
Confidence 477777777777777763
No 305
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=26.70 E-value=85 Score=24.70 Aligned_cols=27 Identities=11% Similarity=0.309 Sum_probs=22.9
Q ss_pred HHHHHHHHccchhhHHHHHHHHHHCCC
Q 047178 114 KALLALEKEQQWHRVVQVIKWMLSKGQ 140 (287)
Q Consensus 114 ~ai~~L~k~~~~~~A~qv~~~M~~~G~ 140 (287)
++++-|.+..--++|++++.+|.++|-
T Consensus 36 tV~D~L~rCdT~EEAlEii~yleKrGE 62 (98)
T COG4003 36 TVIDFLRRCDTEEEALEIINYLEKRGE 62 (98)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHhCC
Confidence 467777888888999999999999885
No 306
>cd08789 CARD_IPS-1_RIG-I Caspase activation and recruitment domains (CARDs) found in IPS-1 and RIG-I-like RNA helicases. Caspase activation and recruitment domains (CARDs) found in IPS-1 (Interferon beta promoter stimulator protein 1) and Retinoic acid Inducible Gene I (RIG-I)-like DEAD box helicases. RIG-I-like helicases and IPS-1 play important roles in the induction of interferons in response to viral infection. They are crucial in triggering innate immunity and in developing adaptive immunity against viral pathogens. RIG-I-like helicases, including MDA5 and RIG-I, contain two N-terminal CARD domains and a C-terminal DEAD box RNA helicase domain. They are cytoplasmic RNA helicases that play an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. MDA5 and RIG-I associate with IPS-1 through a CARD-CAR
Probab=26.55 E-value=2.9e+02 Score=21.07 Aligned_cols=50 Identities=16% Similarity=0.058 Sum_probs=38.9
Q ss_pred hHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChHHHHHHHHHHHHhcCCHHHHHH
Q 047178 182 LCKSMIAIYYRNNMLERLIKLFKGLEAFDRKPPEKSIVQRVADAYEVLGLLEEKER 237 (287)
Q Consensus 182 tyNsmIsgY~k~G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~G~leeA~~ 237 (287)
....+-...-..|+.+.|..|++.+. -.|+. |..+++|+...|.-+-|..
T Consensus 34 d~e~I~a~~~~~G~~~aa~~Ll~~L~---r~~~W---f~~Fl~AL~~~~~~~LA~~ 83 (84)
T cd08789 34 DKERIQAAENNSGNIKAAWTLLDTLV---RRDNW---LEPFLDALRECGLGHLARL 83 (84)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHh---ccCCh---HHHHHHHHHHcCCHHHHHh
Confidence 35555556566799999999999999 36775 7899999999997666653
No 307
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=26.35 E-value=3e+02 Score=21.11 Aligned_cols=92 Identities=21% Similarity=0.152 Sum_probs=41.8
Q ss_pred HHHHcCCHHHHHHHHHHhhhCCCC-CCChhhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChHHHHHHHHHHHHhcCC
Q 047178 153 ALDMDHRAEEAHKFWEKRIGIDLH-SVPWQLCKSMIAIYYRNNMLERLIKLFKGLEAFDRKPPEKSIVQRVADAYEVLGL 231 (287)
Q Consensus 153 ~y~K~G~leeA~~lF~eM~~~g~~-sv~~~tyNsmIsgY~k~G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~G~ 231 (287)
.|...|++++|...|.+....+.. ......+......+...+..++|...+......--..+ ...+..+-..+...+.
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 217 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDD-AEALLNLGLLYLKLGK 217 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccc-hHHHHHhhHHHHHccc
Confidence 455566666666666655331100 00011222233334455566666666655554332211 2334445555555555
Q ss_pred HHHHHHHHHHHhHH
Q 047178 232 LEEKERVLEKYKDL 245 (287)
Q Consensus 232 leeA~~ll~~m~~l 245 (287)
++.+...+......
T Consensus 218 ~~~a~~~~~~~~~~ 231 (291)
T COG0457 218 YEEALEYYEKALEL 231 (291)
T ss_pred HHHHHHHHHHHHhh
Confidence 55555555444433
No 308
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=26.20 E-value=2e+02 Score=28.69 Aligned_cols=107 Identities=11% Similarity=0.048 Sum_probs=69.8
Q ss_pred HHHHHccchhhHHHHHHHHHHCCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHcCC
Q 047178 117 LALEKEQQWHRVVQVIKWMLSKGQGS-TMGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNNM 195 (287)
Q Consensus 117 ~~L~k~~~~~~A~qv~~~M~~~G~~p-d~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~G~ 195 (287)
+.+.+.|.+++|+..+..-. ...| |.++|.-=-.+|.|..++..|+.=-..-..-+ -.-+.+|.|.|.
T Consensus 105 N~yFKQgKy~EAIDCYs~~i--a~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd---------~~Y~KAYSRR~~ 173 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAI--AVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD---------KLYVKAYSRRMQ 173 (536)
T ss_pred hhhhhccchhHHHHHhhhhh--ccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh---------HHHHHHHHHHHH
Confidence 34678899999988876532 2445 88888888889999999988876544443221 334678888887
Q ss_pred HhHHHHHHHHHHH-----CCCCCChHHHHHHHHHHHHhcCCHHHHHHH
Q 047178 196 LERLIKLFKGLEA-----FDRKPPEKSIVQRVADAYEVLGLLEEKERV 238 (287)
Q Consensus 196 ~eeA~~Lf~eM~~-----~Gi~PD~~~Ty~sLI~a~~k~G~leeA~~l 238 (287)
..+++....+-.+ ..+.|+. +-|-..|+....+.++.-+
T Consensus 174 AR~~Lg~~~EAKkD~E~vL~LEP~~----~ELkK~~a~i~Sl~E~~I~ 217 (536)
T KOG4648|consen 174 ARESLGNNMEAKKDCETVLALEPKN----IELKKSLARINSLRERKIA 217 (536)
T ss_pred HHHHHhhHHHHHHhHHHHHhhCccc----HHHHHHHHHhcchHhhhHH
Confidence 7777776665543 2356763 4455556666665555433
No 309
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=25.75 E-value=1.9e+02 Score=31.30 Aligned_cols=20 Identities=10% Similarity=0.323 Sum_probs=12.0
Q ss_pred HHHHHHHHHcCCHhHHHHHH
Q 047178 184 KSMIAIYYRNNMLERLIKLF 203 (287)
Q Consensus 184 NsmIsgY~k~G~~eeA~~Lf 203 (287)
-.|-.+|...|+-++|++-|
T Consensus 856 p~~a~mf~svGMC~qAV~a~ 875 (1189)
T KOG2041|consen 856 PVMADMFTSVGMCDQAVEAY 875 (1189)
T ss_pred HHHHHHHHhhchHHHHHHHH
Confidence 34555666666666666655
No 310
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=25.69 E-value=1.9e+02 Score=24.04 Aligned_cols=27 Identities=15% Similarity=0.310 Sum_probs=20.3
Q ss_pred HHHHHHHHccchhhHHHHHHHHHHCCC
Q 047178 114 KALLALEKEQQWHRVVQVIKWMLSKGQ 140 (287)
Q Consensus 114 ~ai~~L~k~~~~~~A~qv~~~M~~~G~ 140 (287)
.+++-|.+..-.++|++|++||.+.|-
T Consensus 66 tViD~lrRC~T~EEALEVInylek~GE 92 (128)
T PF09868_consen 66 TVIDYLRRCKTDEEALEVINYLEKRGE 92 (128)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHhCC
Confidence 456667777777888888888887775
No 311
>cd08315 Death_TRAILR_DR4_DR5 Death domain of Tumor necrosis factor-Related Apoptosis-Inducing Ligand Receptors. Death Domain (DD) found in Tumor necrosis factor-Related Apoptosis-Inducing Ligand (TRAIL) Receptors. In mammals, this family includes TRAILR1 (also called DR4 or TNFRSF10A) and TRAILR2 (also called DR5, TNFRSF10B, or KILLER). They function as receptors for the cytokine TRAIL and are involved in apoptosis signaling pathways. TRAIL preferentially induces apoptosis in cancer cells while exhibiting little toxicity in normal cells. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=25.62 E-value=2.1e+02 Score=22.43 Aligned_cols=39 Identities=15% Similarity=0.253 Sum_probs=28.3
Q ss_pred HHHHHCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhhhCC
Q 047178 133 KWMLSKGQGSTMGTCGQLIRALDMDHRAEEAHKFWEKRIGID 174 (287)
Q Consensus 133 ~~M~~~G~~pd~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g 174 (287)
.|....|-. .|+++|+.+|.+.|.-.-|+.+=+.+...|
T Consensus 56 ~W~~~~G~~---At~~~L~~aL~~~~~~~~Ae~I~~~l~~~~ 94 (96)
T cd08315 56 TWVNKTGRK---ASVNTLLDALEAIGLRLAKESIQDELISSG 94 (96)
T ss_pred HHHHhhCCC---cHHHHHHHHHHHcccccHHHHHHHHHHHcC
Confidence 455555543 468889999988888888888877766654
No 312
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=25.57 E-value=5.9e+02 Score=26.65 Aligned_cols=75 Identities=8% Similarity=0.137 Sum_probs=46.2
Q ss_pred HCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhhhC---C---------CCCCChhhHHHHHHHHHHcCCHhHHHHHHH
Q 047178 137 SKGQGSTMGTCGQLIRALDMDHRAEEAHKFWEKRIGI---D---------LHSVPWQLCKSMIAIYYRNNMLERLIKLFK 204 (287)
Q Consensus 137 ~~G~~pd~~TYnaLI~~y~K~G~leeA~~lF~eM~~~---g---------~~sv~~~tyNsmIsgY~k~G~~eeA~~Lf~ 204 (287)
+.|+..+......|+... .|++..|...+++.... + +...++..+-.|++++. .|+..+|+.++.
T Consensus 195 ~egi~i~~~al~~La~~s--~gdlr~al~~Lekl~~y~~~~It~~~V~~~l~~~~~~~iF~L~dai~-~~~~~~al~ll~ 271 (614)
T PRK14971 195 KEGITAEPEALNVIAQKA--DGGMRDALSIFDQVVSFTGGNITYKSVIENLNILDYDYYFRLTDALL-AGKVSDSLLLFD 271 (614)
T ss_pred HcCCCCCHHHHHHHHHHc--CCCHHHHHHHHHHHHHhccCCccHHHHHHHhCCCCHHHHHHHHHHHH-cCCHHHHHHHHH
Confidence 457655544444444322 57888888888775321 0 11112223445666554 478999999999
Q ss_pred HHHHCCCCCC
Q 047178 205 GLEAFDRKPP 214 (287)
Q Consensus 205 eM~~~Gi~PD 214 (287)
+|...|..|.
T Consensus 272 ~Ll~~g~~~~ 281 (614)
T PRK14971 272 EILNKGFDGS 281 (614)
T ss_pred HHHHcCCCHH
Confidence 9999998885
No 313
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=25.32 E-value=5.4e+02 Score=25.65 Aligned_cols=53 Identities=21% Similarity=0.273 Sum_probs=32.9
Q ss_pred HHHHcCCHhHHHHHHHHHHHCCCCCChHHHH---HHHHHHHHhcCCHHHHHHHHHHHhH
Q 047178 189 IYYRNNMLERLIKLFKGLEAFDRKPPEKSIV---QRVADAYEVLGLLEEKERVLEKYKD 244 (287)
Q Consensus 189 gY~k~G~~eeA~~Lf~eM~~~Gi~PD~~~Ty---~sLI~a~~k~G~leeA~~ll~~m~~ 244 (287)
+-.|.|+..||.+.|+++...- |= .+.+ --||.+|-..-.+.+...++.+|-+
T Consensus 284 CARklGrlrEA~K~~RDL~ke~--pl-~t~lniheNLiEalLE~QAYADvqavLakYDd 339 (556)
T KOG3807|consen 284 CARKLGRLREAVKIMRDLMKEF--PL-LTMLNIHENLLEALLELQAYADVQAVLAKYDD 339 (556)
T ss_pred HHHHhhhHHHHHHHHHHHhhhc--cH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3447788888888888765432 21 1222 2466677777777777777766554
No 314
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=25.04 E-value=1.6e+02 Score=22.80 Aligned_cols=22 Identities=9% Similarity=0.058 Sum_probs=12.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHh
Q 047178 149 QLIRALDMDHRAEEAHKFWEKR 170 (287)
Q Consensus 149 aLI~~y~K~G~leeA~~lF~eM 170 (287)
.+|..|...|+.+||..-+.++
T Consensus 7 ~~l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 7 SILMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHHhcCCCHHHHHHHHHHh
Confidence 3455556666666666666665
No 315
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=24.64 E-value=5.5e+02 Score=24.03 Aligned_cols=58 Identities=12% Similarity=0.113 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHccchhhHHHHHHHHHHCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHH
Q 047178 111 SLKKALLALEKEQQWHRVVQVIKWMLSKGQGSTMGTCGQLIRALDMDHRAEEAHKFWEK 169 (287)
Q Consensus 111 s~~~ai~~L~k~~~~~~A~qv~~~M~~~G~~pd~~TYnaLI~~y~K~G~leeA~~lF~e 169 (287)
++...+..|-+.++..++++....-++. -..|..+--.|+.-||-.|+++.|..-++-
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVka-kPtda~~RhflfqLlcvaGdw~kAl~Ql~l 60 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKA-KPTDAGGRHFLFQLLCVAGDWEKALAQLNL 60 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhc-CCccccchhHHHHHHhhcchHHHHHHHHHH
Confidence 3455677888888899998877665443 234566677899999999999999865443
No 316
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=24.46 E-value=3.3e+02 Score=20.85 Aligned_cols=18 Identities=17% Similarity=0.161 Sum_probs=9.1
Q ss_pred cCCHhHHHHHHHHHHHCC
Q 047178 193 NNMLERLIKLFKGLEAFD 210 (287)
Q Consensus 193 ~G~~eeA~~Lf~eM~~~G 210 (287)
.-+.++|.+|++.+...|
T Consensus 43 ~tr~~q~~~LLd~L~~RG 60 (84)
T cd08326 43 GSRRDQARQLLIDLETRG 60 (84)
T ss_pred CCHHHHHHHHHHHHHhcC
Confidence 334455555555555554
No 317
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=24.27 E-value=6.8e+02 Score=24.48 Aligned_cols=71 Identities=13% Similarity=0.083 Sum_probs=39.7
Q ss_pred hHHHHHHHHHHcCCHhHHHHHHHHHH----HCCCCCChHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHHhhhhccccccc
Q 047178 182 LCKSMIAIYYRNNMLERLIKLFKGLE----AFDRKPPEKSIVQRVADAYEVLGLLEEKERVLEKYKDLFTEKEKRSNKKS 257 (287)
Q Consensus 182 tyNsmIsgY~k~G~~eeA~~Lf~eM~----~~Gi~PD~~~Ty~sLI~a~~k~G~leeA~~ll~~m~~l~~~~~~~~~~~~ 257 (287)
.|--+-.-||+-+..+.++++..+.. .-|.+-|. . ++.+=-||. -|+..-.++.++..+.+|. ||++|-+
T Consensus 117 a~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv-~-l~kiRlg~~-y~d~~vV~e~lE~~~~~iE---kGgDWeR 190 (412)
T COG5187 117 ADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDV-F-LCKIRLGLI-YGDRKVVEESLEVADDIIE---KGGDWER 190 (412)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhh-H-HHHHHHHHh-hccHHHHHHHHHHHHHHHH---hCCCHHh
Confidence 45556677888888888888777654 35777772 3 333222332 2344444455555555543 4444444
Q ss_pred c
Q 047178 258 K 258 (287)
Q Consensus 258 ~ 258 (287)
|
T Consensus 191 r 191 (412)
T COG5187 191 R 191 (412)
T ss_pred h
Confidence 4
No 318
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=23.99 E-value=7.8e+02 Score=25.08 Aligned_cols=78 Identities=12% Similarity=0.051 Sum_probs=50.8
Q ss_pred HHHHCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCC------------CChhhHHHHHHHHHHcCCHhHHHH
Q 047178 134 WMLSKGQGSTMGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHS------------VPWQLCKSMIAIYYRNNMLERLIK 201 (287)
Q Consensus 134 ~M~~~G~~pd~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~s------------v~~~tyNsmIsgY~k~G~~eeA~~ 201 (287)
.+.+.|+..+......++... .|.+..|..++++....+-.. ++....-.|+++. -.|+.++|+.
T Consensus 190 il~~egi~~~~~al~~ia~~s--~GslR~al~lLdq~ia~~~~~It~~~V~~~lg~~~~~~i~~ll~al-~~~d~~~~l~ 266 (509)
T PRK14958 190 LLKEENVEFENAALDLLARAA--NGSVRDALSLLDQSIAYGNGKVLIADVKTMLGTIEPLLLFDILEAL-AAKAGDRLLG 266 (509)
T ss_pred HHHHcCCCCCHHHHHHHHHHc--CCcHHHHHHHHHHHHhcCCCCcCHHHHHHHHCCCCHHHHHHHHHHH-HcCCHHHHHH
Confidence 344567766655555554432 588999999998765432100 1111233455554 4589999999
Q ss_pred HHHHHHHCCCCCC
Q 047178 202 LFKGLEAFDRKPP 214 (287)
Q Consensus 202 Lf~eM~~~Gi~PD 214 (287)
++++|...|..|.
T Consensus 267 ~~~~l~~~g~~~~ 279 (509)
T PRK14958 267 CVTRLVEQGVDFS 279 (509)
T ss_pred HHHHHHHcCCCHH
Confidence 9999999999985
No 319
>cd00045 DED The Death Effector Domain: a protein-protein interaction domain. Death Effector Domains comprise a subfamily of the Death Domain (DD) superfamily. DED-containing proteins include Fas-Associated via Death Domain (FADD), Astrocyte phosphoprotein PEA-15, the initiator caspases (caspase-8 and -10), and FLICE-inhibitory protein (FLIP), among others. These proteins are prominent components of the programmed cell death (apoptosis) pathway. Some members also have non-apoptotic functions such as regulation of insulin signaling (DEDD and PEA15) and cell cycle progression (DEDD). DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and CARD (Caspase activation and recruitment domain). They serve as adaptors in signaling pathways and they can recruit other proteins into signaling complexes.
Probab=23.95 E-value=1.6e+02 Score=21.98 Aligned_cols=39 Identities=13% Similarity=0.123 Sum_probs=23.4
Q ss_pred CHhHHHHHHHHHHHCC-CCCChHHHHHHHHHHHHhcCCHHHHH
Q 047178 195 MLERLIKLFKGLEAFD-RKPPEKSIVQRVADAYEVLGLLEEKE 236 (287)
Q Consensus 195 ~~eeA~~Lf~eM~~~G-i~PD~~~Ty~sLI~a~~k~G~leeA~ 236 (287)
....+.++|.+|++.| +.||. +..|.+.+...|+.+-+.
T Consensus 35 ~~~s~l~lf~~Le~~~~l~~~n---l~~L~~lL~~i~R~DL~~ 74 (77)
T cd00045 35 KIKTPFDLFLVLERQGKLGEDN---LSYLEELLRSIGRNDLLK 74 (77)
T ss_pred ccCCHHHHHHHHHHcCCCCCch---HHHHHHHHHHcCHHHHHH
Confidence 3455677777777777 45554 345555566666655443
No 320
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=23.58 E-value=2.1e+02 Score=24.03 Aligned_cols=41 Identities=12% Similarity=0.000 Sum_probs=21.8
Q ss_pred HHHHHCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhhhCC
Q 047178 133 KWMLSKGQGSTMGTCGQLIRALDMDHRAEEAHKFWEKRIGID 174 (287)
Q Consensus 133 ~~M~~~G~~pd~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g 174 (287)
..+.+.|+..+. -=-.+++.+...+..-.|+++++++...+
T Consensus 10 ~~lk~~glr~T~-qR~~vl~~L~~~~~~~sAeei~~~l~~~~ 50 (145)
T COG0735 10 ERLKEAGLRLTP-QRLAVLELLLEADGHLSAEELYEELREEG 50 (145)
T ss_pred HHHHHcCCCcCH-HHHHHHHHHHhcCCCCCHHHHHHHHHHhC
Confidence 334455555442 22345555555555566666666666543
No 321
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=23.57 E-value=3.4e+02 Score=20.75 Aligned_cols=62 Identities=11% Similarity=0.043 Sum_probs=42.2
Q ss_pred HHHHHHHHHCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHcCCHhHH
Q 047178 129 VQVIKWMLSKGQGSTMGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNNMLERL 199 (287)
Q Consensus 129 ~qv~~~M~~~G~~pd~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~G~~eeA 199 (287)
-.|+..+.++|+ .|..-.-.-.+..-+.+.|+++.+.++.+|- ..|.+..+++-..|..+-|
T Consensus 19 ~~v~~~L~~~~V----lt~~~~e~I~~~~tr~~q~~~LLd~L~~RG~-----~AF~~F~~aL~~~~~~~LA 80 (84)
T cd08326 19 KYLWDHLLSRGV----FTPDMIEEIQAAGSRRDQARQLLIDLETRGK-----QAFPAFLSALRETGQTDLA 80 (84)
T ss_pred HHHHHHHHhcCC----CCHHHHHHHHcCCCHHHHHHHHHHHHHhcCH-----HHHHHHHHHHHhcCchHHH
Confidence 346677777664 3333333334456678999999999998873 2588888888887776555
No 322
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=23.55 E-value=6.5e+02 Score=24.21 Aligned_cols=21 Identities=10% Similarity=0.148 Sum_probs=10.7
Q ss_pred HHHHHHHHHH-----cCCHhHHHHHH
Q 047178 183 CKSMIAIYYR-----NNMLERLIKLF 203 (287)
Q Consensus 183 yNsmIsgY~k-----~G~~eeA~~Lf 203 (287)
|.++..-|-. .|.++||.++.
T Consensus 156 y~~vaELyLl~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 156 YGTVAELYLLHVLLPLGHFSEAEELV 181 (309)
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHH
Confidence 5554444433 35566665555
No 323
>PRK11906 transcriptional regulator; Provisional
Probab=23.50 E-value=7.3e+02 Score=25.27 Aligned_cols=81 Identities=16% Similarity=0.004 Sum_probs=53.4
Q ss_pred cCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChHHHHHHHHHHHHhcCCHHHHH
Q 047178 157 DHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNNMLERLIKLFKGLEAFDRKPPEKSIVQRVADAYEVLGLLEEKE 236 (287)
Q Consensus 157 ~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~G~leeA~ 236 (287)
...+.+|.++-+.-.+.|- .+.+.-..|=.++.-.|+++.|..+|+.-.. +.||.+.+|...--.++-.|+.++|.
T Consensus 317 ~~~~~~a~~~A~rAveld~--~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~--L~Pn~A~~~~~~~~~~~~~G~~~~a~ 392 (458)
T PRK11906 317 ELAAQKALELLDYVSDITT--VDGKILAIMGLITGLSGQAKVSHILFEQAKI--HSTDIASLYYYRALVHFHNEKIEEAR 392 (458)
T ss_pred hHHHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHhhcchhhHHHHHHHHhh--cCCccHHHHHHHHHHHHHcCCHHHHH
Confidence 4456788888888777663 3333222222223566779999999998554 56776555444444466789999999
Q ss_pred HHHHH
Q 047178 237 RVLEK 241 (287)
Q Consensus 237 ~ll~~ 241 (287)
+.+++
T Consensus 393 ~~i~~ 397 (458)
T PRK11906 393 ICIDK 397 (458)
T ss_pred HHHHH
Confidence 88875
No 324
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=23.50 E-value=4.6e+02 Score=25.55 Aligned_cols=58 Identities=16% Similarity=0.153 Sum_probs=34.8
Q ss_pred HHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 047178 184 KSMIAIYYRNNMLERLIKLFKGLEAFDRKPPEKSIVQRVADAYEVLGLLEEKERVLEKYK 243 (287)
Q Consensus 184 NsmIsgY~k~G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~G~leeA~~ll~~m~ 243 (287)
+-.-..|..+|.+.+|.++-+......- .++ ..+-.|+..++..|+--.+..-.+.|.
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltldp-L~e-~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLDP-LSE-QDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcCh-hhh-HHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 3344567777777777777766554331 233 456677777777777555555444443
No 325
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=23.43 E-value=1.4e+02 Score=20.11 Aligned_cols=25 Identities=16% Similarity=0.125 Sum_probs=17.2
Q ss_pred HHHHHHHcCCHhHHHHHHHHHHHCC
Q 047178 186 MIAIYYRNNMLERLIKLFKGLEAFD 210 (287)
Q Consensus 186 mIsgY~k~G~~eeA~~Lf~eM~~~G 210 (287)
|=.+|...|..+.|.+++++....|
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcC
Confidence 3456777777777777777777543
No 326
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=23.03 E-value=4.3e+02 Score=21.70 Aligned_cols=67 Identities=18% Similarity=0.114 Sum_probs=43.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChHHHHHHHHHHHH
Q 047178 148 GQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNNMLERLIKLFKGLEAFDRKPPEKSIVQRVADAYE 227 (287)
Q Consensus 148 naLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~ 227 (287)
|++-+.+...|..+|+..+..-| .+...|++++|+.+...+ +.|| ...+-+|-. .
T Consensus 25 ~tIAdwL~~~~~~~E~v~lIRls------------------SLmNrG~Yq~Al~l~~~~----~~pd-lepw~ALce--~ 79 (115)
T TIGR02508 25 NTIADWLHLKGESEEAVQLIRLS------------------SLMNRGDYQSALQLGNKL----CYPD-LEPWLALCE--W 79 (115)
T ss_pred HHHHHHHhcCCchHHHHHHHHHH------------------HHHccchHHHHHHhcCCC----CCch-HHHHHHHHH--H
Confidence 56666666666666665554332 345689999999998776 6899 465555433 3
Q ss_pred hcCCHHHHHHHH
Q 047178 228 VLGLLEEKERVL 239 (287)
Q Consensus 228 k~G~leeA~~ll 239 (287)
++|.-+....-+
T Consensus 80 rlGl~s~l~~rl 91 (115)
T TIGR02508 80 RLGLGSALESRL 91 (115)
T ss_pred hhccHHHHHHHH
Confidence 677766555444
No 327
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=22.88 E-value=1.9e+02 Score=22.53 Aligned_cols=45 Identities=13% Similarity=0.161 Sum_probs=23.0
Q ss_pred HHHHHHcCCHhHHHHHHHHHHHCCCCCChHHHHHHHHHHHHhcCCH
Q 047178 187 IAIYYRNNMLERLIKLFKGLEAFDRKPPEKSIVQRVADAYEVLGLL 232 (287)
Q Consensus 187 IsgY~k~G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~G~l 232 (287)
+..+...+..-.|.++++.|.+.+..++. .|.--.|+.+...|.+
T Consensus 7 l~~l~~~~~~~sa~ei~~~l~~~~~~i~~-~TVYR~L~~L~~~Gli 51 (116)
T cd07153 7 LEVLLESDGHLTAEEIYERLRKKGPSISL-ATVYRTLELLEEAGLV 51 (116)
T ss_pred HHHHHhCCCCCCHHHHHHHHHhcCCCCCH-HHHHHHHHHHHhCCCE
Confidence 33334444444566666666666655553 3333334456665544
No 328
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=22.80 E-value=5.4e+02 Score=26.54 Aligned_cols=86 Identities=17% Similarity=0.174 Sum_probs=53.4
Q ss_pred HHHcCCHHHHHHHHHHhhhCCCCCCC----hhhHHHHHHHHHHcCCHhHHHHHHHHHHH-CCCCCChHHHHHHHHHH--H
Q 047178 154 LDMDHRAEEAHKFWEKRIGIDLHSVP----WQLCKSMIAIYYRNNMLERLIKLFKGLEA-FDRKPPEKSIVQRVADA--Y 226 (287)
Q Consensus 154 y~K~G~leeA~~lF~eM~~~g~~sv~----~~tyNsmIsgY~k~G~~eeA~~Lf~eM~~-~Gi~PD~~~Ty~sLI~a--~ 226 (287)
+-|.+++.+|+++|.+....--.++. .+.-+-||++|..++ ++.-...+.+..+ .|-.| |-.+..+ +
T Consensus 16 Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~n-ld~Me~~l~~l~~~~~~s~-----~l~LF~~L~~ 89 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNN-LDLMEKQLMELRQQFGKSA-----YLPLFKALVA 89 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhh-HHHHHHHHHHHHHhcCCch-----HHHHHHHHHH
Confidence 34789999999999998754321111 246789999998765 3444444444443 34333 3344333 4
Q ss_pred HhcCCHHHHHHHHHHHhHH
Q 047178 227 EVLGLLEEKERVLEKYKDL 245 (287)
Q Consensus 227 ~k~G~leeA~~ll~~m~~l 245 (287)
-+.+.+.+|.+.+.....-
T Consensus 90 Y~~k~~~kal~~ls~w~~~ 108 (549)
T PF07079_consen 90 YKQKEYRKALQALSVWKEQ 108 (549)
T ss_pred HHhhhHHHHHHHHHHHHhh
Confidence 4678888888888754433
No 329
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=22.72 E-value=3.6e+02 Score=20.78 Aligned_cols=21 Identities=14% Similarity=0.053 Sum_probs=10.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHh
Q 047178 150 LIRALDMDHRAEEAHKFWEKR 170 (287)
Q Consensus 150 LI~~y~K~G~leeA~~lF~eM 170 (287)
+|..|...|+.+||.+-+.++
T Consensus 8 ~l~ey~~~~D~~ea~~~l~~L 28 (113)
T smart00544 8 IIEEYLSSGDTDEAVHCLLEL 28 (113)
T ss_pred HHHHHHHcCCHHHHHHHHHHh
Confidence 444444445555555544444
No 330
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=22.33 E-value=5.9e+02 Score=25.42 Aligned_cols=95 Identities=14% Similarity=0.039 Sum_probs=50.2
Q ss_pred HHHHccchhhHHHHHHHHHH-----CCCCC---------ChhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCCh-hh
Q 047178 118 ALEKEQQWHRVVQVIKWMLS-----KGQGS---------TMGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPW-QL 182 (287)
Q Consensus 118 ~L~k~~~~~~A~qv~~~M~~-----~G~~p---------d~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~-~t 182 (287)
.|.+.++|..|..-++..++ .+..+ -+.+++-|--+|-|.++..+|.+.-++....+- .+. -.
T Consensus 217 ~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~--~N~KAL 294 (397)
T KOG0543|consen 217 VLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDP--NNVKAL 294 (397)
T ss_pred HHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCC--CchhHH
Confidence 36677777777665544321 11111 123455566666777777777776666655431 111 01
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChHH
Q 047178 183 CKSMIAIYYRNNMLERLIKLFKGLEAFDRKPPEKS 217 (287)
Q Consensus 183 yNsmIsgY~k~G~~eeA~~Lf~eM~~~Gi~PD~~~ 217 (287)
|-- =.+|...|.++.|...|..+.+ +.|+...
T Consensus 295 yRr-G~A~l~~~e~~~A~~df~ka~k--~~P~Nka 326 (397)
T KOG0543|consen 295 YRR-GQALLALGEYDLARDDFQKALK--LEPSNKA 326 (397)
T ss_pred HHH-HHHHHhhccHHHHHHHHHHHHH--hCCCcHH
Confidence 211 1244455667777777777765 3565533
No 331
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=21.89 E-value=3e+02 Score=25.73 Aligned_cols=77 Identities=9% Similarity=0.034 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHcCCHhHHHHHHHHHHHC--CCCCChHHHHHHHH
Q 047178 146 TCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNNMLERLIKLFKGLEAF--DRKPPEKSIVQRVA 223 (287)
Q Consensus 146 TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~G~~eeA~~Lf~eM~~~--Gi~PD~~~Ty~sLI 223 (287)
|-+..|+.+-+.+.+.+|..+..+-++.. +.+.-.=..++.-||-.|.+++|..-++-.-.. ...+- +.+|..+|
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkak--Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~-a~lyr~li 79 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAK--PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVG-ASLYRHLI 79 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcC--CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchH-HHHHHHHH
Confidence 55667888889999999998887766542 122234567888999999999997655433221 12232 35666666
Q ss_pred HH
Q 047178 224 DA 225 (287)
Q Consensus 224 ~a 225 (287)
.+
T Consensus 80 r~ 81 (273)
T COG4455 80 RC 81 (273)
T ss_pred HH
Confidence 43
No 332
>cd08318 Death_NMPP84 Death domain of Nuclear Matrix Protein P84. Death domain (DD) found in the Nuclear Matrix Protein P84 (also known as HPR1 or THOC1). HPR1/p84 resides in the nuclear matrix and is part of the THO complex, also called TREX (transcription/export) complex, which functions in mRNP biogenesis at the interface between transcription and export of mRNA from the nucleus. Mice lacking THOC1 have abnormal testis development and are sterile. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=21.56 E-value=1.3e+02 Score=22.94 Aligned_cols=32 Identities=28% Similarity=0.298 Sum_probs=23.0
Q ss_pred HHHHHCCCCCChhHHHHHHHHHHHcCCHHHHHHHH
Q 047178 133 KWMLSKGQGSTMGTCGQLIRALDMDHRAEEAHKFW 167 (287)
Q Consensus 133 ~~M~~~G~~pd~~TYnaLI~~y~K~G~leeA~~lF 167 (287)
.|....|- -.|...|+.+|.++|.-+-|+.+|
T Consensus 55 ~W~~r~g~---~AT~~~L~~aL~~~~~~diae~l~ 86 (86)
T cd08318 55 AWQDREGS---QATPETLITALNAAGLNEIAESLT 86 (86)
T ss_pred HHHHhcCc---cccHHHHHHHHHHcCcHHHHHhhC
Confidence 34444452 257888999999999888888776
No 333
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=21.48 E-value=3e+02 Score=28.07 Aligned_cols=94 Identities=12% Similarity=0.046 Sum_probs=48.8
Q ss_pred HHHHHHHHHHH--cCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChHHH----H
Q 047178 146 TCGQLIRALDM--DHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNNMLERLIKLFKGLEAFDRKPPEKSI----V 219 (287)
Q Consensus 146 TYnaLI~~y~K--~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~G~~eeA~~Lf~eM~~~Gi~PD~~~T----y 219 (287)
+-..-|.+|+. .|.-..|-.+|--.......+.+...-.++=..|...|..++|+..|+.-.. +-|+. ++ |
T Consensus 196 wls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~--~dpy~-i~~MD~Y 272 (564)
T KOG1174|consen 196 WLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLC--ANPDN-VEAMDLY 272 (564)
T ss_pred HHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhh--CChhh-hhhHHHH
Confidence 33444555544 3444444444443333222212223566777778888888888888876443 33542 21 2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhHH
Q 047178 220 QRVADAYEVLGLLEEKERVLEKYKDL 245 (287)
Q Consensus 220 ~sLI~a~~k~G~leeA~~ll~~m~~l 245 (287)
..| +...|++++-..+.+.....
T Consensus 273 a~L---L~~eg~~e~~~~L~~~Lf~~ 295 (564)
T KOG1174|consen 273 AVL---LGQEGGCEQDSALMDYLFAK 295 (564)
T ss_pred HHH---HHhccCHhhHHHHHHHHHhh
Confidence 222 23566776666665544333
No 334
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=21.48 E-value=1e+03 Score=27.35 Aligned_cols=28 Identities=14% Similarity=0.123 Sum_probs=14.5
Q ss_pred CCChhHHHHHHHHHH----HcCCHHHHHHHHH
Q 047178 141 GSTMGTCGQLIRALD----MDHRAEEAHKFWE 168 (287)
Q Consensus 141 ~pd~~TYnaLI~~y~----K~G~leeA~~lF~ 168 (287)
.||...|.....+|+ ..++.++|--+|+
T Consensus 932 ~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye 963 (1265)
T KOG1920|consen 932 KPDSEKQKVIYEAYADHLREELMSDEAALMYE 963 (1265)
T ss_pred ccCHHHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence 356666666655554 3444555544443
No 335
>cd07230 Pat_TGL4-5_like Triacylglycerol lipase 4 and 5. TGL4 and TGL5 are triacylglycerol lipases that are involved in triacylglycerol mobilization and degradation; they are found in lipid particles. Tgl4 is a functional ortholog of mammalian adipose TG lipase (ATGL) and is phosphorylated and activated by cyclin-dependent kinase 1 (Cdk1/Cdc28). TGL4 is 30% homologus to TGL3, whereas TGL5 is 26% homologus to TGL3. This family includes TGL4 (STC1) and TGL5 (STC2) from Saccharomyces cerevisiae.
Probab=21.36 E-value=8.1e+02 Score=24.33 Aligned_cols=43 Identities=19% Similarity=0.248 Sum_probs=34.4
Q ss_pred HHHHHHHHHCCCCCChhH---HHHHHHHHHHcCCHHHHHHHHHHhh
Q 047178 129 VQVIKWMLSKGQGSTMGT---CGQLIRALDMDHRAEEAHKFWEKRI 171 (287)
Q Consensus 129 ~qv~~~M~~~G~~pd~~T---YnaLI~~y~K~G~leeA~~lF~eM~ 171 (287)
+-+++.+.+.|+.|++++ -++++.++.-.+..++..+++.++.
T Consensus 89 iGVLkaL~E~gl~p~vIsGTSaGAivAal~as~~~eel~~~l~~~~ 134 (421)
T cd07230 89 IGVLKALFEANLLPRIISGSSAGSIVAAILCTHTDEEIPELLEEFP 134 (421)
T ss_pred HHHHHHHHHcCCCCCEEEEECHHHHHHHHHHcCCHHHHHHHHHhcc
Confidence 357778889999999764 5778888777799999999888754
No 336
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=21.31 E-value=6.7e+02 Score=23.98 Aligned_cols=116 Identities=6% Similarity=0.026 Sum_probs=69.5
Q ss_pred chhhHHHHHHHHHH-CCCCCChhHHHHHHHHHHH-cCC-HHHHHHHHHHhhh-CCCCCCChhhHHHHHHHHHHcCCHhHH
Q 047178 124 QWHRVVQVIKWMLS-KGQGSTMGTCGQLIRALDM-DHR-AEEAHKFWEKRIG-IDLHSVPWQLCKSMIAIYYRNNMLERL 199 (287)
Q Consensus 124 ~~~~A~qv~~~M~~-~G~~pd~~TYnaLI~~y~K-~G~-leeA~~lF~eM~~-~g~~sv~~~tyNsmIsgY~k~G~~eeA 199 (287)
..-+|+.+|+..-- .-+-.|..+-..|++.+.. .+. +..=.++.+=+.. .+ ..++.-+--++|..++..+.+.+-
T Consensus 143 ~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~-~~l~~~vi~~Il~~L~~~~dW~kl 221 (292)
T PF13929_consen 143 IVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFS-KSLTRNVIISILEILAESRDWNKL 221 (292)
T ss_pred HHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccc-cCCChhHHHHHHHHHHhcccHHHH
Confidence 34556666663211 2244566666666666655 222 1211222222222 12 123434567788899999999998
Q ss_pred HHHHHHHHHC-CCCCChHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 047178 200 IKLFKGLEAF-DRKPPEKSIVQRVADAYEVLGLLEEKERVLEK 241 (287)
Q Consensus 200 ~~Lf~eM~~~-Gi~PD~~~Ty~sLI~a~~k~G~leeA~~ll~~ 241 (287)
++++..-... +..-|. .-|..+|+.....|+..-.+.+.++
T Consensus 222 ~~fW~~~~~~~~~~~D~-rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 222 FQFWEQCIPNSVPGNDP-RPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred HHHHHHhcccCCCCCCC-chHHHHHHHHHHcCCHHHHHHHhhC
Confidence 8888876554 444463 5688899999999998888877764
No 337
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=21.16 E-value=1.8e+02 Score=27.60 Aligned_cols=72 Identities=11% Similarity=0.137 Sum_probs=45.5
Q ss_pred HHcCCHHHHHHHHHHhhh-CCCC----------CCChhhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChHHHHHHHH
Q 047178 155 DMDHRAEEAHKFWEKRIG-IDLH----------SVPWQLCKSMIAIYYRNNMLERLIKLFKGLEAFDRKPPEKSIVQRVA 223 (287)
Q Consensus 155 ~K~G~leeA~~lF~eM~~-~g~~----------sv~~~tyNsmIsgY~k~G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI 223 (287)
.-.|++.+|..-+..-.. .|++ .|....---|+. +|..+.+++|.+.|+++-+.|+.|.++ .+++-
T Consensus 203 ta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~-~~~~~~~~~A~~il~~lw~lgysp~Di--i~~~F 279 (333)
T KOG0991|consen 203 TAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQ-ACLKRNIDEALKILAELWKLGYSPEDI--ITTLF 279 (333)
T ss_pred hccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHH-HHHhccHHHHHHHHHHHHHcCCCHHHH--HHHHH
Confidence 456777777776665432 1110 011122344554 577889999999999999999999863 35665
Q ss_pred HHHHhc
Q 047178 224 DAYEVL 229 (287)
Q Consensus 224 ~a~~k~ 229 (287)
..+-..
T Consensus 280 Rv~K~~ 285 (333)
T KOG0991|consen 280 RVVKNM 285 (333)
T ss_pred HHHHhc
Confidence 554433
No 338
>smart00031 DED Death effector domain.
Probab=21.08 E-value=1.8e+02 Score=21.71 Aligned_cols=40 Identities=20% Similarity=0.282 Sum_probs=24.7
Q ss_pred HhHHHHHHHHHHHCCC-CCChHHHHHHHHHHHHhcCCHHHHHHH
Q 047178 196 LERLIKLFKGLEAFDR-KPPEKSIVQRVADAYEVLGLLEEKERV 238 (287)
Q Consensus 196 ~eeA~~Lf~eM~~~Gi-~PD~~~Ty~sLI~a~~k~G~leeA~~l 238 (287)
...+.++|.+|++.|. .||. ...|.+.+...|+.+-...+
T Consensus 37 ~~~~ldlf~~Le~~~~l~~~n---l~~L~elL~~i~R~DLl~~i 77 (79)
T smart00031 37 IKTFLDLFSALEEQGLLSEDN---LSLLAELLYRLRRLDLLRRL 77 (79)
T ss_pred cCCHHHHHHHHHHcCCCCCcc---HHHHHHHHHHcCHHHHHHHh
Confidence 4567777777777763 4543 35566666666766655444
No 339
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=20.35 E-value=7.5e+02 Score=23.54 Aligned_cols=101 Identities=9% Similarity=0.036 Sum_probs=62.3
Q ss_pred HHHHccchhhHHHHHHHHHHCCCCCChhHHHHHHHHH--HHcCC-HHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHcC
Q 047178 118 ALEKEQQWHRVVQVIKWMLSKGQGSTMGTCGQLIRAL--DMDHR-AEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNN 194 (287)
Q Consensus 118 ~L~k~~~~~~A~qv~~~M~~~G~~pd~~TYnaLI~~y--~K~G~-leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~G 194 (287)
.+-..+++..|..-+..-.+. -+++...+..+-.+| .-.|. -.+|..+|+++...+- .+..+-.-|=-+|...|
T Consensus 165 ~ym~~~~~~~A~~AY~~A~rL-~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~--~~iral~lLA~~afe~g 241 (287)
T COG4235 165 AYMALGRASDALLAYRNALRL-AGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDP--ANIRALSLLAFAAFEQG 241 (287)
T ss_pred HHHHhcchhHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCC--ccHHHHHHHHHHHHHcc
Confidence 344556666676666654432 123333444443333 23333 4589999999998763 23333333556789999
Q ss_pred CHhHHHHHHHHHHHCCCCCChHHHHHHHHH
Q 047178 195 MLERLIKLFKGLEAFDRKPPEKSIVQRVAD 224 (287)
Q Consensus 195 ~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~ 224 (287)
++.+|...|+.|.... .|| .....+|.
T Consensus 242 ~~~~A~~~Wq~lL~~l-p~~--~~rr~~ie 268 (287)
T COG4235 242 DYAEAAAAWQMLLDLL-PAD--DPRRSLIE 268 (287)
T ss_pred cHHHHHHHHHHHHhcC-CCC--CchHHHHH
Confidence 9999999999999764 455 33566664
No 340
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=20.29 E-value=6.4e+02 Score=22.71 Aligned_cols=57 Identities=12% Similarity=-0.021 Sum_probs=31.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHhhh----CCCCCCChhhHHHHHHHHHHcCCHhHHHHHHHHH
Q 047178 150 LIRALDMDHRAEEAHKFWEKRIG----IDLHSVPWQLCKSMIAIYYRNNMLERLIKLFKGL 206 (287)
Q Consensus 150 LI~~y~K~G~leeA~~lF~eM~~----~g~~sv~~~tyNsmIsgY~k~G~~eeA~~Lf~eM 206 (287)
|=.-|.+.|+.++|.++|+.+.. .|-..+...+-..+..++.+.|+.++.+.+--+|
T Consensus 184 ~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 184 MAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 34457788888888888887732 1110000112334455666666666665555444
No 341
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=20.02 E-value=4.1e+02 Score=20.41 Aligned_cols=66 Identities=9% Similarity=0.031 Sum_probs=0.0
Q ss_pred HHHHHHHhhhCCCCCCChhhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChHHHHHHHHHHHHhcCCHHHHHHH
Q 047178 163 AHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNNMLERLIKLFKGLEAFDRKPPEKSIVQRVADAYEVLGLLEEKERV 238 (287)
Q Consensus 163 A~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~G~leeA~~l 238 (287)
...+++.+.++|+ .|-.-.-...+..-..+++.+|++.+...| |.. |.++.+++...|.-.-|.-+
T Consensus 22 ~~~v~~~L~~~gv-----lt~~~~~~I~~~~t~~~k~~~Lld~L~~RG--~~A---F~~F~~aL~~~~~~~La~lL 87 (90)
T cd08332 22 LDELLIHLLQKDI-----LTDSMAESIMAKPTSFSQNVALLNLLPKRG--PRA---FSAFCEALRETSQEHLCDLL 87 (90)
T ss_pred HHHHHHHHHHcCC-----CCHHHHHHHHcCCCcHHHHHHHHHHHHHhC--hhH---HHHHHHHHHhcChHHHHHHH
Done!