Query 047178
Match_columns 287
No_of_seqs 317 out of 1493
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 14:45:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047178.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047178hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4g26_A Pentatricopeptide repea 100.0 8.2E-28 2.8E-32 237.1 20.9 169 73-244 26-203 (501)
2 4g26_A Pentatricopeptide repea 99.9 8.2E-25 2.8E-29 215.7 16.8 146 109-256 26-192 (501)
3 3spa_A Mtrpol, DNA-directed RN 99.9 6E-23 2.1E-27 215.9 10.2 128 109-238 127-258 (1134)
4 3spa_A Mtrpol, DNA-directed RN 99.8 5.1E-20 1.8E-24 193.8 13.3 101 143-245 126-230 (1134)
5 2xpi_A Anaphase-promoting comp 99.4 2.4E-11 8.2E-16 116.6 20.5 134 109-245 407-545 (597)
6 2xpi_A Anaphase-promoting comp 99.3 4.2E-11 1.4E-15 114.9 17.9 128 114-246 378-505 (597)
7 2fo7_A Synthetic consensus TPR 98.9 1.6E-07 5.4E-12 70.4 16.3 127 114-245 6-132 (136)
8 1w3b_A UDP-N-acetylglucosamine 98.8 3.5E-07 1.2E-11 83.3 19.8 131 110-245 238-368 (388)
9 3mkr_A Coatomer subunit epsilo 98.7 5.3E-07 1.8E-11 81.3 18.0 144 91-244 82-228 (291)
10 1w3b_A UDP-N-acetylglucosamine 98.7 1.3E-06 4.6E-11 79.3 19.3 129 112-245 206-334 (388)
11 2y4t_A DNAJ homolog subfamily 98.7 4.4E-07 1.5E-11 83.5 15.9 124 117-245 151-286 (450)
12 2vq2_A PILW, putative fimbrial 98.7 1.7E-06 5.9E-11 71.1 18.0 163 79-246 14-177 (225)
13 2ho1_A Type 4 fimbrial biogene 98.7 1.4E-06 4.9E-11 73.8 17.7 162 79-245 43-204 (252)
14 2ho1_A Type 4 fimbrial biogene 98.7 2.9E-06 9.9E-11 71.9 19.4 134 109-246 105-239 (252)
15 2vq2_A PILW, putative fimbrial 98.6 6E-06 2.1E-10 67.8 20.1 135 109-246 76-212 (225)
16 3as5_A MAMA; tetratricopeptide 98.6 3.5E-06 1.2E-10 66.7 17.3 135 109-248 42-176 (186)
17 2y4t_A DNAJ homolog subfamily 98.6 2.3E-06 7.7E-11 78.7 17.9 130 111-245 28-172 (450)
18 1fch_A Peroxisomal targeting s 98.5 3.1E-06 1.1E-10 75.4 16.7 125 119-247 191-316 (368)
19 2q7f_A YRRB protein; TPR, prot 98.5 9.1E-06 3.1E-10 67.9 18.0 133 109-246 91-223 (243)
20 4eqf_A PEX5-related protein; a 98.5 1.5E-06 5.2E-11 78.1 13.6 128 116-247 184-312 (365)
21 3uq3_A Heat shock protein STI1 98.5 9.5E-06 3.3E-10 68.0 17.1 134 112-249 82-240 (258)
22 3mkr_A Coatomer subunit epsilo 98.5 3.2E-06 1.1E-10 76.2 14.9 153 77-245 38-195 (291)
23 3as5_A MAMA; tetratricopeptide 98.4 5.3E-06 1.8E-10 65.7 14.1 127 114-245 13-139 (186)
24 3uq3_A Heat shock protein STI1 98.4 6.3E-06 2.2E-10 69.1 14.3 164 78-246 10-203 (258)
25 3hym_B Cell division cycle pro 98.4 4.1E-05 1.4E-09 66.5 19.4 132 111-245 127-265 (330)
26 2q7f_A YRRB protein; TPR, prot 98.4 1.8E-05 6.3E-10 66.0 16.3 132 109-245 57-188 (243)
27 4eqf_A PEX5-related protein; a 98.4 5.5E-06 1.9E-10 74.4 13.5 164 77-245 69-276 (365)
28 3nf1_A KLC 1, kinesin light ch 98.4 6.4E-06 2.2E-10 71.1 13.4 138 111-248 71-227 (311)
29 3nf1_A KLC 1, kinesin light ch 98.3 7.1E-06 2.4E-10 70.8 13.5 136 112-247 30-184 (311)
30 3hym_B Cell division cycle pro 98.3 5.9E-05 2E-09 65.5 19.5 161 79-246 62-223 (330)
31 1fch_A Peroxisomal targeting s 98.3 1.7E-05 5.9E-10 70.6 16.2 163 78-245 69-280 (368)
32 1xnf_A Lipoprotein NLPI; TPR, 98.3 1.1E-05 3.8E-10 68.6 14.2 129 111-245 45-173 (275)
33 2fo7_A Synthetic consensus TPR 98.3 1.1E-05 3.6E-10 60.2 12.2 96 146-245 3-98 (136)
34 3cv0_A Peroxisome targeting si 98.3 1.1E-05 3.6E-10 70.2 13.8 124 119-247 148-271 (327)
35 3cv0_A Peroxisome targeting si 98.3 1.5E-05 5E-10 69.3 14.3 134 109-247 172-317 (327)
36 3edt_B KLC 2, kinesin light ch 98.3 8.8E-06 3E-10 68.8 12.5 137 112-248 46-201 (283)
37 1na0_A Designed protein CTPR3; 98.3 2E-05 7E-10 58.3 12.9 90 116-208 16-105 (125)
38 1xnf_A Lipoprotein NLPI; TPR, 98.3 3.7E-05 1.3E-09 65.4 16.2 132 109-247 77-208 (275)
39 3vtx_A MAMA; tetratricopeptide 98.2 0.00022 7.5E-09 57.7 19.6 161 79-246 11-171 (184)
40 1hh8_A P67PHOX, NCF-2, neutrop 98.2 4.1E-05 1.4E-09 63.3 15.5 126 116-247 13-152 (213)
41 3edt_B KLC 2, kinesin light ch 98.2 1.3E-05 4.3E-10 67.9 12.5 135 111-245 87-281 (283)
42 1na0_A Designed protein CTPR3; 98.2 6.4E-05 2.2E-09 55.5 14.7 98 144-245 9-106 (125)
43 1a17_A Serine/threonine protei 98.2 0.0001 3.4E-09 57.9 15.8 132 114-250 18-151 (166)
44 2pl2_A Hypothetical conserved 98.2 0.00018 6E-09 61.2 18.4 129 111-245 41-180 (217)
45 3ieg_A DNAJ homolog subfamily 98.1 0.00026 8.9E-09 61.8 19.1 125 116-245 127-263 (359)
46 3fp2_A TPR repeat-containing p 98.1 9.5E-05 3.2E-09 69.3 17.2 132 110-246 277-408 (537)
47 2gw1_A Mitochondrial precursor 98.1 7.4E-05 2.5E-09 69.3 16.0 133 109-246 270-402 (514)
48 3ieg_A DNAJ homolog subfamily 98.1 0.00029 1E-08 61.5 18.9 131 109-245 71-217 (359)
49 2ond_A Cleavage stimulation fa 98.1 0.00031 1.1E-08 62.6 18.6 134 111-247 136-272 (308)
50 2gw1_A Mitochondrial precursor 98.1 4.5E-05 1.5E-09 70.7 13.3 129 111-245 239-367 (514)
51 4i17_A Hypothetical protein; T 98.1 0.0003 1E-08 59.0 17.2 129 113-245 11-146 (228)
52 3vtx_A MAMA; tetratricopeptide 98.0 0.00041 1.4E-08 56.1 17.3 128 113-245 9-136 (184)
53 3u4t_A TPR repeat-containing p 98.0 0.00011 3.8E-09 62.5 14.4 163 80-248 10-174 (272)
54 3fp2_A TPR repeat-containing p 98.0 9.9E-05 3.4E-09 69.1 15.2 126 114-245 248-373 (537)
55 2pl2_A Hypothetical conserved 98.0 0.00019 6.6E-09 60.9 15.3 127 114-245 10-147 (217)
56 2ond_A Cleavage stimulation fa 98.0 0.00062 2.1E-08 60.7 19.3 124 115-244 105-231 (308)
57 3u4t_A TPR repeat-containing p 98.0 0.0002 6.8E-09 60.9 15.0 165 77-247 41-210 (272)
58 1b89_A Protein (clathrin heavy 98.0 1.8E-05 6.2E-10 77.3 9.1 112 108-241 121-232 (449)
59 2lni_A Stress-induced-phosphop 97.9 0.00019 6.5E-09 53.9 12.0 92 114-208 21-112 (133)
60 4gyw_A UDP-N-acetylglucosamine 97.9 0.00045 1.5E-08 70.8 18.5 163 78-248 14-177 (723)
61 2vyi_A SGTA protein; chaperone 97.9 0.00038 1.3E-08 51.6 13.5 113 114-231 17-129 (131)
62 4abn_A Tetratricopeptide repea 97.8 0.0004 1.4E-08 66.6 16.0 128 110-243 138-285 (474)
63 2vyi_A SGTA protein; chaperone 97.8 0.0004 1.4E-08 51.5 12.5 99 143-245 11-109 (131)
64 4gyw_A UDP-N-acetylglucosamine 97.8 0.00049 1.7E-08 70.5 16.9 128 112-245 12-140 (723)
65 3mv2_B Coatomer subunit epsilo 97.8 0.00067 2.3E-08 63.1 16.3 132 109-246 100-241 (310)
66 1b89_A Protein (clathrin heavy 97.8 2.4E-05 8.2E-10 76.4 6.5 101 114-238 99-199 (449)
67 1elw_A TPR1-domain of HOP; HOP 97.8 0.00039 1.3E-08 50.7 11.7 90 116-208 11-100 (118)
68 3q49_B STIP1 homology and U bo 97.8 0.00066 2.3E-08 51.8 13.3 100 143-246 8-107 (137)
69 2kck_A TPR repeat; tetratricop 97.8 0.00027 9.2E-09 51.3 10.6 97 144-244 6-105 (112)
70 3gyz_A Chaperone protein IPGC; 97.8 0.00031 1.1E-08 57.7 11.9 98 145-246 37-134 (151)
71 2lni_A Stress-induced-phosphop 97.8 0.00088 3E-08 50.1 13.5 101 142-246 14-114 (133)
72 2xcb_A PCRH, regulatory protei 97.7 0.00045 1.5E-08 54.4 12.1 92 150-245 24-115 (142)
73 2e2e_A Formate-dependent nitri 97.7 0.00037 1.3E-08 56.3 11.8 95 112-209 47-144 (177)
74 3u3w_A Transcriptional activat 97.7 0.0013 4.4E-08 58.0 16.2 135 112-246 78-226 (293)
75 3sz7_A HSC70 cochaperone (SGT) 97.7 0.00054 1.8E-08 55.0 12.4 91 115-208 17-107 (164)
76 2ooe_A Cleavage stimulation fa 97.7 0.0016 5.3E-08 62.5 17.5 127 111-244 323-453 (530)
77 2vgx_A Chaperone SYCD; alterna 97.7 0.00055 1.9E-08 55.1 12.1 98 145-246 22-119 (148)
78 4gco_A Protein STI-1; structur 97.7 0.00055 1.9E-08 53.7 11.7 87 119-208 23-109 (126)
79 3ro3_A PINS homolog, G-protein 97.7 0.00063 2.2E-08 52.0 11.8 134 115-248 15-161 (164)
80 1elr_A TPR2A-domain of HOP; HO 97.7 0.00046 1.6E-08 51.3 10.6 99 145-245 5-108 (131)
81 4a1s_A PINS, partner of inscut 97.7 0.00017 5.9E-09 65.3 9.7 139 112-250 226-377 (411)
82 4i17_A Hypothetical protein; T 97.7 0.0049 1.7E-07 51.5 18.1 117 111-232 44-169 (228)
83 2dba_A Smooth muscle cell asso 97.7 0.0011 3.9E-08 50.6 13.0 93 146-242 30-125 (148)
84 3upv_A Heat shock protein STI1 97.6 0.001 3.4E-08 50.7 12.5 96 147-246 7-102 (126)
85 1p5q_A FKBP52, FK506-binding p 97.6 0.0018 6.3E-08 59.1 16.0 133 114-250 152-299 (336)
86 2vsy_A XCC0866; transferase, g 97.6 0.0022 7.6E-08 62.0 17.3 129 112-245 26-157 (568)
87 2h6f_A Protein farnesyltransfe 97.5 0.0011 3.6E-08 62.7 13.4 130 112-246 134-270 (382)
88 1a17_A Serine/threonine protei 97.5 0.002 6.9E-08 50.2 12.9 97 145-245 14-110 (166)
89 1elr_A TPR2A-domain of HOP; HO 97.5 0.002 7E-08 47.7 12.2 97 113-210 8-109 (131)
90 1ouv_A Conserved hypothetical 97.5 0.037 1.3E-06 47.3 22.0 112 122-244 91-214 (273)
91 3gw4_A Uncharacterized protein 97.5 0.0015 5.2E-08 52.8 12.1 136 114-249 31-180 (203)
92 3qou_A Protein YBBN; thioredox 97.5 0.0029 9.8E-08 56.2 14.8 126 115-245 123-248 (287)
93 2qfc_A PLCR protein; TPR, HTH, 97.5 0.016 5.4E-07 50.9 19.5 136 111-246 77-226 (293)
94 3ro2_A PINS homolog, G-protein 97.5 0.00074 2.5E-08 57.9 10.4 137 112-248 186-335 (338)
95 1elw_A TPR1-domain of HOP; HOP 97.5 0.0083 2.8E-07 43.4 14.8 98 144-245 4-101 (118)
96 3qky_A Outer membrane assembly 97.5 0.0052 1.8E-07 52.7 15.7 128 115-246 21-178 (261)
97 2xev_A YBGF; tetratricopeptide 97.5 0.0024 8.1E-08 48.1 12.1 90 118-209 11-105 (129)
98 2ooe_A Cleavage stimulation fa 97.4 0.009 3.1E-07 57.1 18.8 134 111-248 358-495 (530)
99 4abn_A Tetratricopeptide repea 97.4 0.0013 4.3E-08 63.1 12.7 129 111-245 104-250 (474)
100 1ouv_A Conserved hypothetical 97.4 0.016 5.6E-07 49.6 18.7 125 110-245 39-179 (273)
101 3u3w_A Transcriptional activat 97.4 0.0059 2E-07 53.7 16.1 130 119-250 125-271 (293)
102 3sf4_A G-protein-signaling mod 97.4 0.0014 4.9E-08 58.4 11.9 136 112-247 190-338 (406)
103 2vsy_A XCC0866; transferase, g 97.4 0.0019 6.6E-08 62.5 13.7 118 123-245 3-120 (568)
104 3urz_A Uncharacterized protein 97.4 0.0032 1.1E-07 52.9 13.4 123 117-246 62-187 (208)
105 4a1s_A PINS, partner of inscut 97.4 0.0015 5E-08 59.2 11.8 133 114-247 53-214 (411)
106 3k9i_A BH0479 protein; putativ 97.4 0.00046 1.6E-08 52.5 7.0 86 122-209 3-90 (117)
107 4ga2_A E3 SUMO-protein ligase 97.3 0.00087 3E-08 53.8 8.8 82 149-234 36-117 (150)
108 1qqe_A Vesicular transport pro 97.3 0.0025 8.6E-08 56.4 12.6 140 111-250 79-233 (292)
109 4gco_A Protein STI-1; structur 97.3 0.0039 1.3E-07 48.7 12.3 97 146-246 15-111 (126)
110 3ro2_A PINS homolog, G-protein 97.3 0.0024 8.1E-08 54.7 11.9 131 116-247 12-174 (338)
111 3qky_A Outer membrane assembly 97.3 0.0039 1.3E-07 53.4 13.4 133 111-247 54-226 (261)
112 2kck_A TPR repeat; tetratricop 97.3 0.0036 1.2E-07 45.1 11.3 92 116-210 13-107 (112)
113 2fbn_A 70 kDa peptidylprolyl i 97.3 0.0055 1.9E-07 50.5 13.2 119 114-236 43-176 (198)
114 3gyz_A Chaperone protein IPGC; 97.3 0.011 3.6E-07 48.4 14.7 97 114-215 41-137 (151)
115 3gw4_A Uncharacterized protein 97.3 0.0062 2.1E-07 49.1 13.3 126 120-246 3-137 (203)
116 2qfc_A PLCR protein; TPR, HTH, 97.2 0.02 6.8E-07 50.2 17.3 133 118-250 124-271 (293)
117 2dba_A Smooth muscle cell asso 97.2 0.0098 3.4E-07 45.2 13.4 98 112-215 31-132 (148)
118 3sf4_A G-protein-signaling mod 97.2 0.0057 2E-07 54.4 13.8 124 125-248 163-299 (406)
119 3q49_B STIP1 homology and U bo 97.2 0.01 3.5E-07 45.0 13.4 98 109-209 9-106 (137)
120 3n71_A Histone lysine methyltr 97.2 0.008 2.7E-07 58.9 15.4 128 117-244 317-463 (490)
121 2r5s_A Uncharacterized protein 97.2 0.0046 1.6E-07 50.2 11.7 127 112-243 43-171 (176)
122 2xcb_A PCRH, regulatory protei 97.2 0.0086 2.9E-07 46.9 12.9 92 115-209 24-115 (142)
123 3upv_A Heat shock protein STI1 97.2 0.0093 3.2E-07 45.1 12.6 92 115-209 10-101 (126)
124 3sz7_A HSC70 cochaperone (SGT) 97.2 0.0082 2.8E-07 47.8 12.9 100 143-246 10-109 (164)
125 2c2l_A CHIP, carboxy terminus 97.2 0.0067 2.3E-07 53.7 13.5 92 114-208 9-100 (281)
126 1qqe_A Vesicular transport pro 97.2 0.0067 2.3E-07 53.6 13.4 135 111-245 39-187 (292)
127 2h6f_A Protein farnesyltransfe 97.1 0.013 4.6E-07 55.0 15.9 123 117-245 105-229 (382)
128 3ulq_A Response regulator aspa 97.1 0.0093 3.2E-07 54.1 14.3 136 112-247 146-295 (383)
129 1hxi_A PEX5, peroxisome target 97.1 0.0042 1.4E-07 48.0 10.3 92 149-244 22-113 (121)
130 1hh8_A P67PHOX, NCF-2, neutrop 97.1 0.0059 2E-07 50.0 11.5 93 146-245 8-100 (213)
131 2yhc_A BAMD, UPF0169 lipoprote 97.1 0.025 8.4E-07 47.7 15.8 129 116-246 11-177 (225)
132 3k9i_A BH0479 protein; putativ 97.1 0.0017 5.8E-08 49.3 7.4 89 156-246 2-91 (117)
133 3ulq_A Response regulator aspa 97.1 0.0066 2.3E-07 55.1 12.6 136 112-250 227-373 (383)
134 2xev_A YBGF; tetratricopeptide 97.1 0.026 8.7E-07 42.2 14.1 96 149-247 7-107 (129)
135 4ga2_A E3 SUMO-protein ligase 97.1 0.0087 3E-07 47.8 11.9 111 115-230 37-148 (150)
136 2vgx_A Chaperone SYCD; alterna 97.0 0.013 4.5E-07 46.8 12.8 93 114-209 26-118 (148)
137 2fbn_A 70 kDa peptidylprolyl i 96.9 0.018 6.3E-07 47.2 13.3 99 145-245 39-151 (198)
138 2ifu_A Gamma-SNAP; membrane fu 96.9 0.0094 3.2E-07 53.1 12.3 128 114-242 81-221 (307)
139 4f3v_A ESX-1 secretion system 96.9 0.008 2.7E-07 55.1 11.9 126 115-245 108-237 (282)
140 3mv2_B Coatomer subunit epsilo 96.9 0.029 9.8E-07 52.1 15.5 131 109-246 136-283 (310)
141 1wao_1 Serine/threonine protei 96.8 0.0027 9.2E-08 61.2 8.5 117 120-241 17-135 (477)
142 2pzi_A Probable serine/threoni 96.8 0.0053 1.8E-07 61.7 10.9 127 111-243 435-561 (681)
143 2yhc_A BAMD, UPF0169 lipoprote 96.8 0.056 1.9E-06 45.5 15.7 129 111-243 43-211 (225)
144 3rkv_A Putative peptidylprolyl 96.8 0.011 3.8E-07 47.0 10.7 94 114-209 16-126 (162)
145 3q15_A PSP28, response regulat 96.8 0.024 8.3E-07 51.4 14.3 135 114-251 227-371 (378)
146 3urz_A Uncharacterized protein 96.8 0.012 4.1E-07 49.3 11.3 109 117-231 12-137 (208)
147 3qwp_A SET and MYND domain-con 96.8 0.014 4.8E-07 55.9 12.9 99 151-249 294-404 (429)
148 1hz4_A MALT regulatory protein 96.8 0.083 2.8E-06 47.2 17.3 136 111-247 176-324 (373)
149 2r5s_A Uncharacterized protein 96.8 0.0071 2.4E-07 49.0 9.3 124 115-245 12-137 (176)
150 4gcn_A Protein STI-1; structur 96.8 0.027 9.1E-07 43.7 12.4 51 119-170 18-68 (127)
151 1p5q_A FKBP52, FK506-binding p 96.8 0.013 4.5E-07 53.4 11.9 99 144-245 147-259 (336)
152 2ifu_A Gamma-SNAP; membrane fu 96.7 0.011 3.8E-07 52.6 11.0 134 112-246 39-185 (307)
153 1kt0_A FKBP51, 51 kDa FK506-bi 96.7 0.026 9E-07 53.7 14.0 119 114-238 273-407 (457)
154 3qou_A Protein YBBN; thioredox 96.7 0.028 9.7E-07 49.7 13.1 129 111-243 153-282 (287)
155 1hxi_A PEX5, peroxisome target 96.6 0.018 6.1E-07 44.4 10.3 91 116-209 24-114 (121)
156 1hz4_A MALT regulatory protein 96.6 0.024 8.3E-07 50.8 12.4 130 117-248 61-206 (373)
157 3ro3_A PINS homolog, G-protein 96.6 0.02 6.8E-07 43.3 10.2 103 145-247 10-120 (164)
158 2kat_A Uncharacterized protein 96.5 0.015 5.1E-07 43.5 8.9 79 127-208 3-81 (115)
159 2l6j_A TPR repeat-containing p 96.5 0.0013 4.6E-08 48.0 2.8 68 143-214 3-70 (111)
160 2e2e_A Formate-dependent nitri 96.5 0.056 1.9E-06 43.1 12.8 122 121-247 22-146 (177)
161 3q15_A PSP28, response regulat 96.5 0.055 1.9E-06 49.0 14.1 134 114-247 146-292 (378)
162 3n71_A Histone lysine methyltr 96.5 0.017 5.8E-07 56.5 11.3 96 153-248 318-425 (490)
163 1na3_A Designed protein CTPR2; 96.4 0.032 1.1E-06 38.9 9.8 81 144-228 9-89 (91)
164 3qww_A SET and MYND domain-con 96.4 0.015 5.1E-07 56.0 10.5 94 156-249 310-415 (433)
165 2pzi_A Probable serine/threoni 96.4 0.011 3.7E-07 59.4 9.7 120 120-244 402-528 (681)
166 1ihg_A Cyclophilin 40; ppiase 96.3 0.041 1.4E-06 51.2 12.6 120 114-237 228-362 (370)
167 2c2l_A CHIP, carboxy terminus 96.3 0.078 2.7E-06 46.7 13.6 91 79-172 10-100 (281)
168 2hr2_A Hypothetical protein; a 96.3 0.062 2.1E-06 45.1 12.2 102 147-248 14-134 (159)
169 1ihg_A Cyclophilin 40; ppiase 96.2 0.038 1.3E-06 51.4 11.3 99 146-246 225-337 (370)
170 2kat_A Uncharacterized protein 96.1 0.058 2E-06 40.1 10.0 83 161-247 2-84 (115)
171 4gcn_A Protein STI-1; structur 96.0 0.032 1.1E-06 43.2 8.6 99 145-245 9-112 (127)
172 1wao_1 Serine/threonine protei 96.0 0.033 1.1E-06 53.5 10.5 89 153-245 15-103 (477)
173 3qwp_A SET and MYND domain-con 95.9 0.081 2.8E-06 50.6 12.6 97 111-207 289-398 (429)
174 3rkv_A Putative peptidylprolyl 95.7 0.089 3.1E-06 41.5 10.1 98 147-246 14-127 (162)
175 1kt0_A FKBP51, 51 kDa FK506-bi 95.7 0.084 2.9E-06 50.2 11.6 97 145-244 269-379 (457)
176 3rjv_A Putative SEL1 repeat pr 95.6 0.41 1.4E-05 39.9 14.5 83 124-209 68-158 (212)
177 4b4t_Q 26S proteasome regulato 95.6 0.24 8.2E-06 44.8 13.9 136 112-247 58-206 (434)
178 4e6h_A MRNA 3'-END-processing 95.6 0.28 9.5E-06 49.9 15.6 124 114-241 383-529 (679)
179 3ma5_A Tetratricopeptide repea 95.3 0.095 3.2E-06 38.6 8.6 64 143-208 6-69 (100)
180 4b4t_Q 26S proteasome regulato 95.3 0.3 1E-05 44.1 13.6 129 116-244 11-163 (434)
181 3ma5_A Tetratricopeptide repea 95.2 0.11 3.7E-06 38.2 8.6 64 181-246 8-71 (100)
182 2if4_A ATFKBP42; FKBP-like, al 95.2 0.055 1.9E-06 49.3 8.3 87 118-208 188-292 (338)
183 4e6h_A MRNA 3'-END-processing 95.2 0.16 5.3E-06 51.7 12.4 132 112-246 437-571 (679)
184 3qww_A SET and MYND domain-con 95.2 0.18 6E-06 48.5 12.1 86 122-207 311-409 (433)
185 2if4_A ATFKBP42; FKBP-like, al 95.2 0.047 1.6E-06 49.8 7.7 96 146-246 181-294 (338)
186 1xi4_A Clathrin heavy chain; a 94.9 0.25 8.4E-06 54.7 13.3 111 108-240 1194-1304(1630)
187 1na3_A Designed protein CTPR2; 94.7 0.22 7.5E-06 34.4 8.5 63 181-245 10-72 (91)
188 4g1t_A Interferon-induced prot 94.5 1.1 3.9E-05 40.7 15.2 84 160-245 316-401 (472)
189 2xm6_A Protein corresponding t 94.5 2.7 9.3E-05 39.2 18.2 113 123-246 310-433 (490)
190 2xm6_A Protein corresponding t 94.5 2.9 0.0001 39.0 18.4 112 122-244 128-251 (490)
191 1xi4_A Clathrin heavy chain; a 94.0 0.43 1.5E-05 52.8 12.8 114 110-240 1106-1219(1630)
192 2l6j_A TPR repeat-containing p 93.9 0.23 7.7E-06 35.7 7.5 63 182-246 6-68 (111)
193 4g1t_A Interferon-induced prot 93.9 1.1 3.9E-05 40.8 14.0 135 110-246 52-205 (472)
194 2hr2_A Hypothetical protein; a 93.9 0.81 2.8E-05 38.2 11.8 94 116-214 18-141 (159)
195 2kc7_A BFR218_protein; tetratr 93.7 0.25 8.4E-06 35.3 7.3 56 152-209 8-64 (99)
196 3mkq_A Coatomer beta'-subunit; 93.6 0.78 2.7E-05 45.1 12.9 59 142-210 679-737 (814)
197 3rjv_A Putative SEL1 repeat pr 93.3 1.2 4.1E-05 37.0 12.1 126 112-245 21-158 (212)
198 3dra_A Protein farnesyltransfe 93.1 0.62 2.1E-05 42.5 10.7 124 119-245 154-287 (306)
199 4f3v_A ESX-1 secretion system 93.0 0.38 1.3E-05 43.9 9.0 90 148-243 106-198 (282)
200 2kc7_A BFR218_protein; tetratr 92.7 0.45 1.5E-05 33.8 7.3 59 186-246 6-65 (99)
201 2uy1_A Cleavage stimulation fa 92.1 2.3 7.8E-05 41.0 13.6 124 114-246 291-414 (493)
202 1klx_A Cysteine rich protein B 92.1 3.4 0.00012 32.1 14.0 110 123-245 9-126 (138)
203 3e4b_A ALGK; tetratricopeptide 89.5 6.1 0.00021 37.0 13.7 18 193-210 264-281 (452)
204 1zu2_A Mitochondrial import re 88.9 1.6 5.5E-05 36.4 8.1 114 119-251 12-146 (158)
205 1zu2_A Mitochondrial import re 88.3 0.91 3.1E-05 37.9 6.2 88 154-245 12-120 (158)
206 1dce_A Protein (RAB geranylger 88.1 21 0.00071 34.9 18.0 114 125-243 89-219 (567)
207 3bee_A Putative YFRE protein; 87.1 5.2 0.00018 29.5 9.3 80 142-226 4-86 (93)
208 2v5f_A Prolyl 4-hydroxylase su 84.9 6.5 0.00022 28.9 8.9 69 145-215 6-79 (104)
209 3e4b_A ALGK; tetratricopeptide 84.1 27 0.00092 32.5 18.1 79 156-244 263-350 (452)
210 2ff4_A Probable regulatory pro 83.5 3.2 0.00011 38.7 8.1 75 147-225 174-253 (388)
211 3ly7_A Transcriptional activat 82.6 30 0.001 32.6 14.3 117 123-244 213-338 (372)
212 3u64_A Protein TP_0956; tetrat 82.3 6.9 0.00024 36.0 9.6 93 144-246 199-299 (301)
213 1pc2_A Mitochondria fission pr 81.3 9.7 0.00033 31.4 9.3 73 132-208 21-99 (152)
214 1wy6_A Hypothetical protein ST 80.3 17 0.00059 30.3 10.3 55 184-240 95-149 (172)
215 4gns_B Protein CSD3, chitin bi 79.6 19 0.00064 37.1 12.7 129 114-244 253-399 (754)
216 3dss_A Geranylgeranyl transfer 78.7 26 0.00089 32.2 12.3 124 119-247 118-269 (331)
217 3q7a_A Farnesyltransferase alp 78.6 12 0.00042 34.8 10.1 117 127-246 185-332 (349)
218 3mkq_A Coatomer beta'-subunit; 78.1 19 0.00065 35.1 11.9 23 183-205 739-761 (814)
219 3mkq_B Coatomer subunit alpha; 77.5 32 0.0011 29.1 13.5 50 183-242 92-141 (177)
220 2v5f_A Prolyl 4-hydroxylase su 76.8 16 0.00054 26.8 8.6 65 109-173 5-75 (104)
221 2uy1_A Cleavage stimulation fa 72.8 22 0.00077 33.9 10.6 90 147-242 289-380 (493)
222 1uzc_A Hypothetical protein FL 70.9 2.2 7.5E-05 31.0 2.2 55 196-253 14-69 (71)
223 1klx_A Cysteine rich protein B 67.0 40 0.0014 25.7 11.7 81 124-211 40-128 (138)
224 2dod_A Transcription elongatio 65.1 3.9 0.00013 30.5 2.6 54 196-253 16-70 (82)
225 1pc2_A Mitochondria fission pr 64.0 19 0.00065 29.6 6.9 81 160-245 14-100 (152)
226 3ly7_A Transcriptional activat 63.1 24 0.00081 33.3 8.2 73 141-219 274-346 (372)
227 3dra_A Protein farnesyltransfe 62.6 86 0.003 28.0 19.2 167 70-243 26-213 (306)
228 1dce_A Protein (RAB geranylger 62.4 1.2E+02 0.004 29.5 13.6 113 125-243 45-171 (567)
229 2nsz_A Programmed cell death p 62.3 26 0.00088 27.6 7.3 62 148-211 11-74 (129)
230 1wy6_A Hypothetical protein ST 60.4 53 0.0018 27.4 8.8 68 143-212 90-157 (172)
231 2ff4_A Probable regulatory pro 56.1 48 0.0016 30.6 9.1 171 73-247 32-236 (388)
232 3u64_A Protein TP_0956; tetrat 56.0 32 0.0011 31.5 7.6 84 159-244 178-268 (301)
233 3txn_A 26S proteasome regulato 55.2 1.1E+02 0.0038 28.7 11.5 129 76-206 61-207 (394)
234 2b7e_A PRE-mRNA processing pro 54.4 12 0.00042 26.2 3.5 28 197-226 3-31 (59)
235 2ion_A PDCD4, programmed cell 54.1 24 0.00083 28.8 5.9 63 112-175 12-76 (152)
236 1nzn_A CGI-135 protein, fissio 52.6 71 0.0024 25.3 8.3 64 142-208 33-102 (126)
237 2p58_C Putative type III secre 52.1 38 0.0013 26.6 6.3 79 124-211 22-100 (116)
238 4fhn_B Nucleoporin NUP120; pro 49.3 2.4E+02 0.0083 29.7 14.2 123 114-242 817-964 (1139)
239 2uwj_G Type III export protein 48.0 37 0.0013 26.7 5.6 79 124-211 21-99 (115)
240 3bee_A Putative YFRE protein; 47.0 78 0.0027 22.8 8.2 60 183-244 9-71 (93)
241 3ygs_P Procaspase 9; apoptosis 46.5 73 0.0025 23.7 7.1 39 195-238 52-90 (97)
242 3q7a_A Farnesyltransferase alp 45.4 1.8E+02 0.0063 26.7 18.8 168 69-243 46-235 (349)
243 1v54_E Cytochrome C oxidase po 42.1 70 0.0024 25.0 6.4 43 198-241 28-70 (109)
244 4a1g_A Mitotic checkpoint seri 41.9 42 0.0014 27.6 5.4 53 161-213 82-134 (152)
245 3eu9_A Huntingtin-interacting 40.0 55 0.0019 26.2 6.0 16 151-166 80-95 (240)
246 2b7e_A PRE-mRNA processing pro 37.9 23 0.00079 24.7 2.8 32 161-193 3-35 (59)
247 2wvi_A Mitotic checkpoint seri 37.5 56 0.0019 27.2 5.6 54 161-214 77-130 (164)
248 3esl_A Checkpoint serine/threo 37.3 66 0.0023 27.7 6.2 57 157-213 92-148 (202)
249 3eiq_C Programmed cell death p 36.6 86 0.0029 29.2 7.4 66 147-214 220-287 (358)
250 3dss_A Geranylgeranyl transfer 33.1 2.8E+02 0.0095 25.1 19.2 114 125-243 90-220 (331)
251 1s6c_A KV4 potassium channel-i 32.7 1.7E+02 0.0058 22.5 8.8 130 67-206 34-182 (183)
252 4fhn_B Nucleoporin NUP120; pro 32.1 2.8E+02 0.0094 29.3 11.2 121 109-234 843-989 (1139)
253 4aez_C MAD3, mitotic spindle c 31.9 73 0.0025 27.8 5.7 44 197-240 131-174 (223)
254 4a1g_A Mitotic checkpoint seri 31.9 90 0.0031 25.6 5.9 43 198-240 83-125 (152)
255 3esl_A Checkpoint serine/threo 31.3 1.2E+02 0.0043 26.0 7.0 71 127-211 97-168 (202)
256 2p1h_A APAF-1, apoptotic prote 30.9 1.4E+02 0.0046 21.6 6.4 36 157-197 49-84 (94)
257 1wdy_A 2-5A-dependent ribonucl 30.8 68 0.0023 26.3 5.2 109 129-240 118-240 (285)
258 3ygs_P Procaspase 9; apoptosis 30.3 74 0.0025 23.6 4.8 40 158-202 51-90 (97)
259 2wvi_A Mitotic checkpoint seri 29.1 1E+02 0.0035 25.5 5.9 50 126-175 77-127 (164)
260 2rfa_A Transient receptor pote 29.0 1.3E+02 0.0045 24.1 6.6 111 130-245 89-223 (232)
261 2y69_E Cytochrome C oxidase su 27.3 1.5E+02 0.0052 24.3 6.4 43 198-241 71-113 (152)
262 2zu6_B Programmed cell death p 26.9 98 0.0033 28.1 5.8 65 147-213 169-235 (307)
263 4b4t_R RPN7, 26S proteasome re 24.5 95 0.0033 29.0 5.5 92 146-242 133-234 (429)
264 1wgl_A TOLL-interacting protei 24.2 1E+02 0.0034 21.2 4.2 47 161-214 10-57 (59)
265 2hyv_A Annexin A2; calcium-bin 24.2 3.8E+02 0.013 23.9 11.5 98 111-215 63-179 (308)
266 2nsz_A Programmed cell death p 23.9 1.1E+02 0.0039 23.8 5.0 46 183-230 10-55 (129)
267 1v54_E Cytochrome C oxidase po 22.9 2.7E+02 0.0091 21.7 6.8 49 138-188 39-87 (109)
268 4b4t_P 26S proteasome regulato 22.9 3.3E+02 0.011 25.4 8.9 95 114-208 142-246 (445)
269 2ion_A PDCD4, programmed cell 21.8 1.4E+02 0.0048 24.1 5.3 66 146-213 11-78 (152)
270 1hm6_A Annexin 1; phospholipid 21.8 4.6E+02 0.016 23.9 11.7 125 110-246 102-244 (346)
271 2f6m_A Suppressor protein STP2 21.5 94 0.0032 22.0 3.6 29 147-175 5-33 (65)
272 4aez_C MAD3, mitotic spindle c 21.3 1.3E+02 0.0044 26.3 5.2 53 161-213 131-183 (223)
273 2xai_A ASB-9, ankyrin repeat a 21.0 1.7E+02 0.0058 24.2 6.0 104 130-241 50-156 (261)
274 2yru_A Steroid receptor RNA ac 20.5 1.2E+02 0.0041 23.7 4.5 18 191-208 72-89 (118)
275 1yii_A Annexin A5, annexin V, 20.1 4.7E+02 0.016 23.3 10.6 107 126-246 18-132 (320)
No 1
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=8.2e-28 Score=237.11 Aligned_cols=169 Identities=9% Similarity=0.010 Sum_probs=151.8
Q ss_pred cccHHHHHHHHHccCCCcchHHHHHHHHHHccCCCCHHHHHHHHHHHHHccc---------hhhHHHHHHHHHHCCCCCC
Q 047178 73 KDKINFLVNTLLDLKNSKEDVYGTLDAWVAWEQNFPVGSLKKALLALEKEQQ---------WHRVVQVIKWMLSKGQGST 143 (287)
Q Consensus 73 ~~~~~~Li~~l~~lg~~~~~v~~~Ld~~~~~~~~~~~~s~~~ai~~L~k~~~---------~~~A~qv~~~M~~~G~~pd 143 (287)
+.-.+.+++.+++.|+..++ ...++++...+..++..+++.+|..+++.+. +++|.++|++|.+.|+.||
T Consensus 26 e~~l~~~id~c~k~G~~~~A-~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd 104 (501)
T 4g26_A 26 EALLKQKLDMCSKKGDVLEA-LRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPN 104 (501)
T ss_dssp HHHHHHHHHHTTTSCCHHHH-HHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHhCCCHHHH-HHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCC
Confidence 33456788999999998665 3455566667778889999999999887654 6789999999999999999
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChHHHHHHHH
Q 047178 144 MGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNNMLERLIKLFKGLEAFDRKPPEKSIVQRVA 223 (287)
Q Consensus 144 ~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI 223 (287)
.+|||+||++||+.|++++|.++|++|...|+. |+.+|||+||.+||+.|++++|.++|++|.+.|+.||. +||++||
T Consensus 105 ~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~-Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~-~ty~~Li 182 (501)
T 4g26_A 105 EATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQ-PRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEE-PELAALL 182 (501)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCH-HHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCH-HHHHHHH
Confidence 999999999999999999999999999999985 57789999999999999999999999999999999995 9999999
Q ss_pred HHHHhcCCHHHHHHHHHHHhH
Q 047178 224 DAYEVLGLLEEKERVLEKYKD 244 (287)
Q Consensus 224 ~a~~k~G~leeA~~ll~~m~~ 244 (287)
++|++.|++++|.+++++|.+
T Consensus 183 ~~~~~~g~~d~A~~ll~~Mr~ 203 (501)
T 4g26_A 183 KVSMDTKNADKVYKTLQRLRD 203 (501)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhhCCCHHHHHHHHHHHHH
Confidence 999999999999999998865
No 2
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.92 E-value=8.2e-25 Score=215.70 Aligned_cols=146 Identities=11% Similarity=0.029 Sum_probs=133.2
Q ss_pred HHHHHHHHHHHHHccchhhHHHHHHHHHHCCCCCChhHHHHHHHHHHHcCC---------HHHHHHHHHHhhhCCCCCCC
Q 047178 109 VGSLKKALLALEKEQQWHRVVQVIKWMLSKGQGSTMGTCGQLIRALDMDHR---------AEEAHKFWEKRIGIDLHSVP 179 (287)
Q Consensus 109 ~~s~~~ai~~L~k~~~~~~A~qv~~~M~~~G~~pd~~TYnaLI~~y~K~G~---------leeA~~lF~eM~~~g~~sv~ 179 (287)
...+..+|..+++.|++++|+++|++|.+.|+.||.+|||+||++|++.|. +++|.++|++|...|+. |+
T Consensus 26 e~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~-Pd 104 (501)
T 4g26_A 26 EALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVV-PN 104 (501)
T ss_dssp HHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCC-CC
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCC-CC
Confidence 344677899999999999999999999999999999999999999998765 79999999999999985 67
Q ss_pred hhhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChHHHHHHHHHHHHhcCCHHHHHHHHHHH------------hHHHh
Q 047178 180 WQLCKSMIAIYYRNNMLERLIKLFKGLEAFDRKPPEKSIVQRVADAYEVLGLLEEKERVLEKY------------KDLFT 247 (287)
Q Consensus 180 ~~tyNsmIsgY~k~G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~G~leeA~~ll~~m------------~~l~~ 247 (287)
.+|||+||++||+.|++++|.++|++|.+.|+.|| .+|||+||.+||+.|++++|.++|++| ..++.
T Consensus 105 ~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd-~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~ 183 (501)
T 4g26_A 105 EATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPR-LRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLK 183 (501)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCc-cceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 78999999999999999999999999999999999 599999999999999999999999964 55777
Q ss_pred hhhcccccc
Q 047178 248 EKEKRSNKK 256 (287)
Q Consensus 248 ~~~~~~~~~ 256 (287)
.||+.++..
T Consensus 184 ~~~~~g~~d 192 (501)
T 4g26_A 184 VSMDTKNAD 192 (501)
T ss_dssp HHHHTTCHH
T ss_pred HHhhCCCHH
Confidence 888776643
No 3
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.88 E-value=6e-23 Score=215.87 Aligned_cols=128 Identities=8% Similarity=-0.062 Sum_probs=115.9
Q ss_pred HHHHHHHHHHHHHccchhhHHHHHHHHH---HCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHH
Q 047178 109 VGSLKKALLALEKEQQWHRVVQVIKWML---SKGQGSTMGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKS 185 (287)
Q Consensus 109 ~~s~~~ai~~L~k~~~~~~A~qv~~~M~---~~G~~pd~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNs 185 (287)
..+++.+|++||+.|++++|.++|..|. ++|+.||++|||+||+|||+.|++++|.++|++|.+.|+. |+.+|||+
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~-PDvvTYnt 205 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLT-PDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCC-CCHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC-CcHHHHHH
Confidence 4689999999999999999999998876 4589999999999999999999999999999999999985 67899999
Q ss_pred HHHHHHHcCCH-hHHHHHHHHHHHCCCCCChHHHHHHHHHHHHhcCCHHHHHHH
Q 047178 186 MIAIYYRNNML-ERLIKLFKGLEAFDRKPPEKSIVQRVADAYEVLGLLEEKERV 238 (287)
Q Consensus 186 mIsgY~k~G~~-eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~G~leeA~~l 238 (287)
||+|||+.|+. ++|.++|++|.+.|+.||. +||+++++++.+.+.++...++
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~-vtY~~ll~~~eR~~vL~~Vrkv 258 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQA-LFTAVLLSEEDRATVLKAVHKV 258 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHH-HHHHSCCCHHHHHHHHHHHGGG
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCCh-hhcccccChhhHHHHHHHHHHh
Confidence 99999999985 7899999999999999995 9999999888777665555444
No 4
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.82 E-value=5.1e-20 Score=193.77 Aligned_cols=101 Identities=10% Similarity=0.062 Sum_probs=91.7
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHhhh---CCCCCCChhhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChHHHH
Q 047178 143 TMGTCGQLIRALDMDHRAEEAHKFWEKRIG---IDLHSVPWQLCKSMIAIYYRNNMLERLIKLFKGLEAFDRKPPEKSIV 219 (287)
Q Consensus 143 d~~TYnaLI~~y~K~G~leeA~~lF~eM~~---~g~~sv~~~tyNsmIsgY~k~G~~eeA~~Lf~eM~~~Gi~PD~~~Ty 219 (287)
-.+|||+||+||||+|++++|.++|++|.+ +|+. ++.+|||+||+|||+.|++++|.++|++|.+.|+.|| ++||
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~-PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PD-vvTY 203 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKL-LTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPD-LLSY 203 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTT-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCC-HHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCC-CCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCc-HHHH
Confidence 357999999999999999999999988764 4663 6778999999999999999999999999999999999 5999
Q ss_pred HHHHHHHHhcCC-HHHHHHHHHHHhHH
Q 047178 220 QRVADAYEVLGL-LEEKERVLEKYKDL 245 (287)
Q Consensus 220 ~sLI~a~~k~G~-leeA~~ll~~m~~l 245 (287)
|+||++||+.|+ .++|.++|++|..-
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~k 230 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQE 230 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHc
Confidence 999999999998 58899999988653
No 5
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.39 E-value=2.4e-11 Score=116.61 Aligned_cols=134 Identities=9% Similarity=-0.036 Sum_probs=102.7
Q ss_pred HHHHHHHHHHHHHccchhhHHHHHHHHHHCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHH
Q 047178 109 VGSLKKALLALEKEQQWHRVVQVIKWMLSKGQGSTMGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIA 188 (287)
Q Consensus 109 ~~s~~~ai~~L~k~~~~~~A~qv~~~M~~~G~~pd~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIs 188 (287)
...+..+...+.+.|++++|+++|+.|.+.+ ..+..+|+.|+.+|++.|++++|.++|++|.+.+. .+..+|+.|+.
T Consensus 407 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~l~~ 483 (597)
T 2xpi_A 407 GPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQ--YDPLLLNELGV 483 (597)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC--CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CChHHHHHHHH
Confidence 4566677777888888888888888887653 24677888888888888888888888888876532 23457888888
Q ss_pred HHHHcCCHhHHHHHHHHHHHC----CCCCCh-HHHHHHHHHHHHhcCCHHHHHHHHHHHhHH
Q 047178 189 IYYRNNMLERLIKLFKGLEAF----DRKPPE-KSIVQRVADAYEVLGLLEEKERVLEKYKDL 245 (287)
Q Consensus 189 gY~k~G~~eeA~~Lf~eM~~~----Gi~PD~-~~Ty~sLI~a~~k~G~leeA~~ll~~m~~l 245 (287)
+|++.|++++|.++|++|.+. +..|+. ..+|..+..+|.+.|++++|..+++++..+
T Consensus 484 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 545 (597)
T 2xpi_A 484 VAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLL 545 (597)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 888888888888888888765 777773 367888888888888888888888776554
No 6
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.33 E-value=4.2e-11 Score=114.87 Aligned_cols=128 Identities=2% Similarity=-0.167 Sum_probs=60.6
Q ss_pred HHHHHHHHccchhhHHHHHHHHHHCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHc
Q 047178 114 KALLALEKEQQWHRVVQVIKWMLSKGQGSTMGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRN 193 (287)
Q Consensus 114 ~ai~~L~k~~~~~~A~qv~~~M~~~G~~pd~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~ 193 (287)
.+...+.+.|++++|.++|+.|.+.. ..+..+|+.|+.+|++.|+.++|.++|++|...+. .+..+|+.++.+|++.
T Consensus 378 ~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~~ 454 (597)
T 2xpi_A 378 AVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQ--GTHLPYLFLGMQHMQL 454 (597)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTT--TCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc--cchHHHHHHHHHHHHc
Confidence 33444445555555555555544321 12344555555555555555555555555544321 1223455555555555
Q ss_pred CCHhHHHHHHHHHHHCCCCCChHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHH
Q 047178 194 NMLERLIKLFKGLEAFDRKPPEKSIVQRVADAYEVLGLLEEKERVLEKYKDLF 246 (287)
Q Consensus 194 G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~G~leeA~~ll~~m~~l~ 246 (287)
|++++|.++|++|.+.. |+...+|+.++..|++.|++++|.++|+++..+.
T Consensus 455 g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 505 (597)
T 2xpi_A 455 GNILLANEYLQSSYALF--QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLV 505 (597)
T ss_dssp TCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhh
Confidence 55555555555554432 2223445555555555555555555555554443
No 7
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.88 E-value=1.6e-07 Score=70.43 Aligned_cols=127 Identities=16% Similarity=0.178 Sum_probs=104.3
Q ss_pred HHHHHHHHccchhhHHHHHHHHHHCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHc
Q 047178 114 KALLALEKEQQWHRVVQVIKWMLSKGQGSTMGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRN 193 (287)
Q Consensus 114 ~ai~~L~k~~~~~~A~qv~~~M~~~G~~pd~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~ 193 (287)
.+...+...|++++|..++..+.+.. ..+..+|..+...|...|+.++|..+|+++...+. .....|..+...|.+.
T Consensus 6 ~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~~ 82 (136)
T 2fo7_A 6 NLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP--RSAEAWYNLGNAYYKQ 82 (136)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCC--CchHHHHHHHHHHHHh
Confidence 34455677899999999999988754 24667888899999999999999999999987542 2345688899999999
Q ss_pred CCHhHHHHHHHHHHHCCCCCChHHHHHHHHHHHHhcCCHHHHHHHHHHHhHH
Q 047178 194 NMLERLIKLFKGLEAFDRKPPEKSIVQRVADAYEVLGLLEEKERVLEKYKDL 245 (287)
Q Consensus 194 G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~G~leeA~~ll~~m~~l 245 (287)
|++++|..+|.++.... |+...++..+...|...|++++|...++++..+
T Consensus 83 ~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 83 GDYDEAIEYYQKALELD--PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 99999999999998754 332466788899999999999999999887654
No 8
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=98.83 E-value=3.5e-07 Score=83.26 Aligned_cols=131 Identities=10% Similarity=0.060 Sum_probs=97.0
Q ss_pred HHHHHHHHHHHHccchhhHHHHHHHHHHCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHH
Q 047178 110 GSLKKALLALEKEQQWHRVVQVIKWMLSKGQGSTMGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAI 189 (287)
Q Consensus 110 ~s~~~ai~~L~k~~~~~~A~qv~~~M~~~G~~pd~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsg 189 (287)
..+..+...+.+.|++++|++.++.+.+.. +.+..+|+.|...|.+.|++++|.++|+++.... +....+|+.+...
T Consensus 238 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~ 314 (388)
T 1w3b_A 238 VVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC--PTHADSLNNLANI 314 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cccHHHHHHHHHH
Confidence 344455666778888888888888887643 1245678888888888888888888888887653 1233568888888
Q ss_pred HHHcCCHhHHHHHHHHHHHCCCCCChHHHHHHHHHHHHhcCCHHHHHHHHHHHhHH
Q 047178 190 YYRNNMLERLIKLFKGLEAFDRKPPEKSIVQRVADAYEVLGLLEEKERVLEKYKDL 245 (287)
Q Consensus 190 Y~k~G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~G~leeA~~ll~~m~~l 245 (287)
|.+.|++++|.++|+++.+. .|+...++..+...|.+.|++++|...++++..+
T Consensus 315 ~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 315 KREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp HHTTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred HHHcCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 88888888888888887753 4654567788888888888888888888776543
No 9
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=98.74 E-value=5.3e-07 Score=81.31 Aligned_cols=144 Identities=17% Similarity=0.126 Sum_probs=94.7
Q ss_pred chHHHHHHHHHHccCCCCHHH-HHHHHHHHHHccchhhHHHHHHHHHHCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHH
Q 047178 91 EDVYGTLDAWVAWEQNFPVGS-LKKALLALEKEQQWHRVVQVIKWMLSKGQGSTMGTCGQLIRALDMDHRAEEAHKFWEK 169 (287)
Q Consensus 91 ~~v~~~Ld~~~~~~~~~~~~s-~~~ai~~L~k~~~~~~A~qv~~~M~~~G~~pd~~TYnaLI~~y~K~G~leeA~~lF~e 169 (287)
+.....++.+......+.... +..+-..+...|++++|++.+.. ..+..++..+...|.+.|+.++|.+.|++
T Consensus 82 ~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~ 155 (291)
T 3mkr_A 82 DAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKK 155 (291)
T ss_dssp HHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 334455666544321122222 23333556788888888887765 45677888888888888888888888888
Q ss_pred hhhCCCCCCCh--hhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChHHHHHHHHHHHHhcCCHHHHHHHHHHHhH
Q 047178 170 RIGIDLHSVPW--QLCKSMIAIYYRNNMLERLIKLFKGLEAFDRKPPEKSIVQRVADAYEVLGLLEEKERVLEKYKD 244 (287)
Q Consensus 170 M~~~g~~sv~~--~tyNsmIsgY~k~G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~G~leeA~~ll~~m~~ 244 (287)
+...+- .+. ......+..+...|++++|+.+|+++.+. .|+....++.+..+|.+.|++++|+..+++...
T Consensus 156 ~~~~~p--~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~ 228 (291)
T 3mkr_A 156 MQDQDE--DATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALD 228 (291)
T ss_dssp HHHHCT--TCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhhCc--CcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 876541 111 01122334444558888888888888876 354457778888888888888888888886544
No 10
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=98.70 E-value=1.3e-06 Score=79.34 Aligned_cols=129 Identities=12% Similarity=0.066 Sum_probs=101.8
Q ss_pred HHHHHHHHHHccchhhHHHHHHHHHHCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHH
Q 047178 112 LKKALLALEKEQQWHRVVQVIKWMLSKGQGSTMGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYY 191 (287)
Q Consensus 112 ~~~ai~~L~k~~~~~~A~qv~~~M~~~G~~pd~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~ 191 (287)
+..+-..+...+++++|+..+....+.. +.+..+|+.|...|.+.|++++|.+.|+++...+- ....+|+.+...|.
T Consensus 206 ~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~ 282 (388)
T 1w3b_A 206 YINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQP--HFPDAYCNLANALK 282 (388)
T ss_dssp HHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCS--SCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHH
Confidence 3444455667777888877777766532 22467889999999999999999999999987642 23357899999999
Q ss_pred HcCCHhHHHHHHHHHHHCCCCCChHHHHHHHHHHHHhcCCHHHHHHHHHHHhHH
Q 047178 192 RNNMLERLIKLFKGLEAFDRKPPEKSIVQRVADAYEVLGLLEEKERVLEKYKDL 245 (287)
Q Consensus 192 k~G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~G~leeA~~ll~~m~~l 245 (287)
+.|++++|.++|+++.+. .|+...++..+...|...|++++|...++++..+
T Consensus 283 ~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 334 (388)
T 1w3b_A 283 EKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEAVRLYRKALEV 334 (388)
T ss_dssp HHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS
T ss_pred HcCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 999999999999999875 3544678899999999999999999999876543
No 11
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=98.69 E-value=4.4e-07 Score=83.51 Aligned_cols=124 Identities=8% Similarity=-0.026 Sum_probs=103.3
Q ss_pred HHHHHccchhhHHHHHHHHHHCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHcCCH
Q 047178 117 LALEKEQQWHRVVQVIKWMLSKGQGSTMGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNNML 196 (287)
Q Consensus 117 ~~L~k~~~~~~A~qv~~~M~~~G~~pd~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~G~~ 196 (287)
..+.+.|++++|++++..+.+.. ..+..++..+..+|.+.|+.++|.++|+++...+- ....+|+.+...|.+.|++
T Consensus 151 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~ 227 (450)
T 2y4t_A 151 LNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKN--DNTEAFYKISTLYYQLGDH 227 (450)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHC--SCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCH
Confidence 34788899999999999998753 34678899999999999999999999999986532 2346799999999999999
Q ss_pred hHHHHHHHHHHHCCCCCChHHHHHHH------------HHHHHhcCCHHHHHHHHHHHhHH
Q 047178 197 ERLIKLFKGLEAFDRKPPEKSIVQRV------------ADAYEVLGLLEEKERVLEKYKDL 245 (287)
Q Consensus 197 eeA~~Lf~eM~~~Gi~PD~~~Ty~sL------------I~a~~k~G~leeA~~ll~~m~~l 245 (287)
++|+.+|+++... .|+....+..+ ...|...|++++|..+++++..+
T Consensus 228 ~~A~~~~~~~~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~ 286 (450)
T 2y4t_A 228 ELSLSEVRECLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT 286 (450)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh--CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 9999999999854 56654545544 78899999999999999987654
No 12
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=98.69 E-value=1.7e-06 Score=71.11 Aligned_cols=163 Identities=10% Similarity=0.034 Sum_probs=121.4
Q ss_pred HHHHHHccCCCcchHHHHHHHHHHccCCCCHHHHHHHHHHHHHccchhhHHHHHHHHHHCCCCCChhHHHHHHHHHHHc-
Q 047178 79 LVNTLLDLKNSKEDVYGTLDAWVAWEQNFPVGSLKKALLALEKEQQWHRVVQVIKWMLSKGQGSTMGTCGQLIRALDMD- 157 (287)
Q Consensus 79 Li~~l~~lg~~~~~v~~~Ld~~~~~~~~~~~~s~~~ai~~L~k~~~~~~A~qv~~~M~~~G~~pd~~TYnaLI~~y~K~- 157 (287)
+...+...|+...++ ..+....... .-....+..+...+...|++++|.+++....+.. ..+..+|..+...|...
T Consensus 14 ~~~~~~~~~~~~~A~-~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~ 90 (225)
T 2vq2_A 14 LAMEYMRGQDYRQAT-ASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFLCGRL 90 (225)
T ss_dssp HHHHHHHTTCHHHHH-HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHhhHHHHH-HHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhc
Confidence 444566667765443 2233332221 1124455556667888999999999999988753 23667899999999999
Q ss_pred CCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChHHHHHHHHHHHHhcCCHHHHHH
Q 047178 158 HRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNNMLERLIKLFKGLEAFDRKPPEKSIVQRVADAYEVLGLLEEKER 237 (287)
Q Consensus 158 G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~G~leeA~~ 237 (287)
|+.++|..+|+++...+..+.....|..+...|.+.|++++|+..|.++.... |+....+..+...|...|++++|..
T Consensus 91 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~ 168 (225)
T 2vq2_A 91 NRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ--PQFPPAFKELARTKMLAGQLGDADY 168 (225)
T ss_dssp CCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCchHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999998722211123578889999999999999999999998753 4435678889999999999999999
Q ss_pred HHHHHhHHH
Q 047178 238 VLEKYKDLF 246 (287)
Q Consensus 238 ll~~m~~l~ 246 (287)
++++...+.
T Consensus 169 ~~~~~~~~~ 177 (225)
T 2vq2_A 169 YFKKYQSRV 177 (225)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhC
Confidence 999877654
No 13
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=98.68 E-value=1.4e-06 Score=73.79 Aligned_cols=162 Identities=10% Similarity=-0.017 Sum_probs=121.8
Q ss_pred HHHHHHccCCCcchHHHHHHHHHHccCCCCHHHHHHHHHHHHHccchhhHHHHHHHHHHCCCCCChhHHHHHHHHHHHcC
Q 047178 79 LVNTLLDLKNSKEDVYGTLDAWVAWEQNFPVGSLKKALLALEKEQQWHRVVQVIKWMLSKGQGSTMGTCGQLIRALDMDH 158 (287)
Q Consensus 79 Li~~l~~lg~~~~~v~~~Ld~~~~~~~~~~~~s~~~ai~~L~k~~~~~~A~qv~~~M~~~G~~pd~~TYnaLI~~y~K~G 158 (287)
+...+...|+...++ ..+....... .-....+..+...+...|++++|++++....+.. ..+..+|..+...|...|
T Consensus 43 ~a~~~~~~~~~~~A~-~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g 119 (252)
T 2ho1_A 43 LGLGYLQRGNTEQAK-VPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFLYEQK 119 (252)
T ss_dssp HHHHHHHTTCTGGGH-HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCChHHHH-HHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHHh
Confidence 344566677776653 2333333221 1224455566667889999999999999988753 236678999999999999
Q ss_pred CHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChHHHHHHHHHHHHhcCCHHHHHHH
Q 047178 159 RAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNNMLERLIKLFKGLEAFDRKPPEKSIVQRVADAYEVLGLLEEKERV 238 (287)
Q Consensus 159 ~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~G~leeA~~l 238 (287)
+.++|.++|+++...+..+.....|..+...|.+.|++++|.+.|.+..... |+...++..+...|...|++++|..+
T Consensus 120 ~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~ 197 (252)
T 2ho1_A 120 RYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN--RNQPSVALEMADLLYKEREYVPARQY 197 (252)
T ss_dssp CHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999998722221223568889999999999999999999988754 44356788899999999999999999
Q ss_pred HHHHhHH
Q 047178 239 LEKYKDL 245 (287)
Q Consensus 239 l~~m~~l 245 (287)
+++...+
T Consensus 198 ~~~~~~~ 204 (252)
T 2ho1_A 198 YDLFAQG 204 (252)
T ss_dssp HHHHHTT
T ss_pred HHHHHHh
Confidence 9887653
No 14
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=98.67 E-value=2.9e-06 Score=71.91 Aligned_cols=134 Identities=9% Similarity=0.000 Sum_probs=109.6
Q ss_pred HHHHHHHHHHHHHccchhhHHHHHHHHHHCCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHH
Q 047178 109 VGSLKKALLALEKEQQWHRVVQVIKWMLSKGQGS-TMGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMI 187 (287)
Q Consensus 109 ~~s~~~ai~~L~k~~~~~~A~qv~~~M~~~G~~p-d~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmI 187 (287)
...+..+...+...|++++|++++..+.+.+..| +...|..+...|.+.|+.++|...|++....+- .....|..+.
T Consensus 105 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~la 182 (252)
T 2ho1_A 105 ARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNR--NQPSVALEMA 182 (252)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS--CCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc--ccHHHHHHHH
Confidence 3445556667888999999999999987744445 456788899999999999999999999887542 2345788899
Q ss_pred HHHHHcCCHhHHHHHHHHHHHCCCCCChHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHH
Q 047178 188 AIYYRNNMLERLIKLFKGLEAFDRKPPEKSIVQRVADAYEVLGLLEEKERVLEKYKDLF 246 (287)
Q Consensus 188 sgY~k~G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~G~leeA~~ll~~m~~l~ 246 (287)
..|.+.|++++|..+|.+..... |+....+..+...|...|+.++|...++++..++
T Consensus 183 ~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 183 DLLYKEREYVPARQYYDLFAQGG--GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTS--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 99999999999999999988743 4435668888889999999999999999887654
No 15
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=98.64 E-value=6e-06 Score=67.79 Aligned_cols=135 Identities=8% Similarity=-0.125 Sum_probs=106.0
Q ss_pred HHHHHHHHHHHHHc-cchhhHHHHHHHHHHCCCCCC-hhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHH
Q 047178 109 VGSLKKALLALEKE-QQWHRVVQVIKWMLSKGQGST-MGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSM 186 (287)
Q Consensus 109 ~~s~~~ai~~L~k~-~~~~~A~qv~~~M~~~G~~pd-~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsm 186 (287)
...+..+...+... |++++|+.+++.+.+.+..|+ ..+|..+...|.+.|+.++|...|+++...+- .....|..+
T Consensus 76 ~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~l 153 (225)
T 2vq2_A 76 AEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQP--QFPPAFKEL 153 (225)
T ss_dssp HHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST--TCHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCchHHHHH
Confidence 34455566677888 999999999999887433343 56788899999999999999999999887542 234568889
Q ss_pred HHHHHHcCCHhHHHHHHHHHHHCCCCCChHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHH
Q 047178 187 IAIYYRNNMLERLIKLFKGLEAFDRKPPEKSIVQRVADAYEVLGLLEEKERVLEKYKDLF 246 (287)
Q Consensus 187 IsgY~k~G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~G~leeA~~ll~~m~~l~ 246 (287)
...|.+.|++++|.++|++.....-. +....+..+...+...|+.+++..+++.+..+.
T Consensus 154 a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 212 (225)
T 2vq2_A 154 ARTKMLAGQLGDADYYFKKYQSRVEV-LQADDLLLGWKIAKALGNAQAAYEYEAQLQANF 212 (225)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC-CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC
Confidence 99999999999999999998875321 324667778888899999999999888766543
No 16
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=98.62 E-value=3.5e-06 Score=66.73 Aligned_cols=135 Identities=16% Similarity=0.092 Sum_probs=110.4
Q ss_pred HHHHHHHHHHHHHccchhhHHHHHHHHHHCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHH
Q 047178 109 VGSLKKALLALEKEQQWHRVVQVIKWMLSKGQGSTMGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIA 188 (287)
Q Consensus 109 ~~s~~~ai~~L~k~~~~~~A~qv~~~M~~~G~~pd~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIs 188 (287)
...+..+...+...|++++|.+.++.+.+.. ..+..+|..+...|...|+.++|.++|++.....- .....|..+..
T Consensus 42 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~a~ 118 (186)
T 3as5_A 42 VDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANP--INFNVRFRLGV 118 (186)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT--TCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCc--HhHHHHHHHHH
Confidence 3445556667788999999999999988753 34667889999999999999999999999877542 23356888899
Q ss_pred HHHHcCCHhHHHHHHHHHHHCCCCCChHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHHhh
Q 047178 189 IYYRNNMLERLIKLFKGLEAFDRKPPEKSIVQRVADAYEVLGLLEEKERVLEKYKDLFTE 248 (287)
Q Consensus 189 gY~k~G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~G~leeA~~ll~~m~~l~~~ 248 (287)
.|.+.|++++|.+.|.+..... |+...++..+...|...|+.++|...+++...+...
T Consensus 119 ~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 176 (186)
T 3as5_A 119 ALDNLGRFDEAIDSFKIALGLR--PNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEG 176 (186)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHC
T ss_pred HHHHcCcHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 9999999999999999988764 444577888999999999999999999988776543
No 17
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=98.60 E-value=2.3e-06 Score=78.72 Aligned_cols=130 Identities=10% Similarity=-0.043 Sum_probs=106.6
Q ss_pred HHHHHHHHHHHccchhhHHHHHHHHHHCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHH
Q 047178 111 SLKKALLALEKEQQWHRVVQVIKWMLSKGQGSTMGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIY 190 (287)
Q Consensus 111 s~~~ai~~L~k~~~~~~A~qv~~~M~~~G~~pd~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY 190 (287)
.+......+.+.|++++|+.+|..+.+. ...+..+|..+..+|.+.|+.++|...|+++...+- .....|..+...|
T Consensus 28 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~ 104 (450)
T 2y4t_A 28 KHLELGKKLLAAGQLADALSQFHAAVDG-DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKM--DFTAARLQRGHLL 104 (450)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC--CcHHHHHHHHHHH
Confidence 3455666788999999999999999875 334688899999999999999999999999987652 2345799999999
Q ss_pred HHcCCHhHHHHHHHHHHHCCCCCChH---HHHHHHHH------------HHHhcCCHHHHHHHHHHHhHH
Q 047178 191 YRNNMLERLIKLFKGLEAFDRKPPEK---SIVQRVAD------------AYEVLGLLEEKERVLEKYKDL 245 (287)
Q Consensus 191 ~k~G~~eeA~~Lf~eM~~~Gi~PD~~---~Ty~sLI~------------a~~k~G~leeA~~ll~~m~~l 245 (287)
.+.|++++|.++|+++... .|+.. ..+..++. .|...|++++|..+++++..+
T Consensus 105 ~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 172 (450)
T 2y4t_A 105 LKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEV 172 (450)
T ss_dssp HHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999999999999999875 46644 45555544 489999999999999987654
No 18
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=98.54 E-value=3.1e-06 Score=75.42 Aligned_cols=125 Identities=10% Similarity=0.049 Sum_probs=101.6
Q ss_pred HHHccchhhHHHHHHHHHHCCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHcCCHh
Q 047178 119 LEKEQQWHRVVQVIKWMLSKGQGS-TMGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNNMLE 197 (287)
Q Consensus 119 L~k~~~~~~A~qv~~~M~~~G~~p-d~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~G~~e 197 (287)
+...|++++|++++..+.+..-.. +..+|..+...|.+.|++++|...|++....+- ....+|+.+...|.+.|+++
T Consensus 191 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~--~~~~~~~~l~~~~~~~g~~~ 268 (368)
T 1fch_A 191 LLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRP--NDYLLWNKLGATLANGNQSE 268 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHH
T ss_pred HhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc--CCHHHHHHHHHHHHHcCCHH
Confidence 336677888888888777643221 477899999999999999999999999887542 23357899999999999999
Q ss_pred HHHHHHHHHHHCCCCCChHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHHh
Q 047178 198 RLIKLFKGLEAFDRKPPEKSIVQRVADAYEVLGLLEEKERVLEKYKDLFT 247 (287)
Q Consensus 198 eA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~G~leeA~~ll~~m~~l~~ 247 (287)
+|+..|.++... .|+...++..+...|.+.|++++|...+++...+..
T Consensus 269 ~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 316 (368)
T 1fch_A 269 EAVAAYRRALEL--QPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQR 316 (368)
T ss_dssp HHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 999999998875 455557789999999999999999999998877654
No 19
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=98.52 E-value=9.1e-06 Score=67.87 Aligned_cols=133 Identities=12% Similarity=0.054 Sum_probs=103.5
Q ss_pred HHHHHHHHHHHHHccchhhHHHHHHHHHHCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHH
Q 047178 109 VGSLKKALLALEKEQQWHRVVQVIKWMLSKGQGSTMGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIA 188 (287)
Q Consensus 109 ~~s~~~ai~~L~k~~~~~~A~qv~~~M~~~G~~pd~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIs 188 (287)
...+..+...+...|++++|+++++.+.+.. ..+..+|..+...|.+.|+.++|..+|++.....- .....|..+..
T Consensus 91 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~l~~ 167 (243)
T 2q7f_A 91 ATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNE--NDTEARFQFGM 167 (243)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCT--TCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC--ccHHHHHHHHH
Confidence 3444555666778889999999998887753 24567788888899999999999999998876542 23356888888
Q ss_pred HHHHcCCHhHHHHHHHHHHHCCCCCChHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHH
Q 047178 189 IYYRNNMLERLIKLFKGLEAFDRKPPEKSIVQRVADAYEVLGLLEEKERVLEKYKDLF 246 (287)
Q Consensus 189 gY~k~G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~G~leeA~~ll~~m~~l~ 246 (287)
.|.+.|++++|...|.+..... |+...++..+...|...|++++|...+++...+.
T Consensus 168 ~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 168 CLANEGMLDEALSQFAAVTEQD--PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHcCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 9999999999999999887653 4434678888889999999999999988876654
No 20
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=98.50 E-value=1.5e-06 Score=78.11 Aligned_cols=128 Identities=9% Similarity=-0.031 Sum_probs=105.7
Q ss_pred HHHHHHccchhhHHHHHHHHHHCCCC-CChhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHcC
Q 047178 116 LLALEKEQQWHRVVQVIKWMLSKGQG-STMGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNN 194 (287)
Q Consensus 116 i~~L~k~~~~~~A~qv~~~M~~~G~~-pd~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~G 194 (287)
...+.+.|++++|++++..+.+..-. .+..+|..|...|.+.|+.++|...|++.....- ....+|+.+...|.+.|
T Consensus 184 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~~g 261 (365)
T 4eqf_A 184 SKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRP--EDYSLWNRLGATLANGD 261 (365)
T ss_dssp -----CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTT
T ss_pred HHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcC
Confidence 45677889999999999999886432 2678999999999999999999999999987542 23457999999999999
Q ss_pred CHhHHHHHHHHHHHCCCCCChHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHHh
Q 047178 195 MLERLIKLFKGLEAFDRKPPEKSIVQRVADAYEVLGLLEEKERVLEKYKDLFT 247 (287)
Q Consensus 195 ~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~G~leeA~~ll~~m~~l~~ 247 (287)
++++|++.|++..+. .|+...++..+...|...|++++|...+++...+.-
T Consensus 262 ~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 312 (365)
T 4eqf_A 262 RSEEAVEAYTRALEI--QPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQR 312 (365)
T ss_dssp CHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc
Confidence 999999999999875 466567789999999999999999999998877654
No 21
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=98.48 E-value=9.5e-06 Score=68.02 Aligned_cols=134 Identities=11% Similarity=-0.067 Sum_probs=104.6
Q ss_pred HHHHHHHHHHccchhhHHHHHHHHHHCC------------------------CCC-ChhHHHHHHHHHHHcCCHHHHHHH
Q 047178 112 LKKALLALEKEQQWHRVVQVIKWMLSKG------------------------QGS-TMGTCGQLIRALDMDHRAEEAHKF 166 (287)
Q Consensus 112 ~~~ai~~L~k~~~~~~A~qv~~~M~~~G------------------------~~p-d~~TYnaLI~~y~K~G~leeA~~l 166 (287)
+..+...+.+.+++++|++.+....+.. ..| +...|..+-..|...|+.++|...
T Consensus 82 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 161 (258)
T 3uq3_A 82 FARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKA 161 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHH
Confidence 3444555667777777777777766532 222 345688889999999999999999
Q ss_pred HHHhhhCCCCCCChhhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHH
Q 047178 167 WEKRIGIDLHSVPWQLCKSMIAIYYRNNMLERLIKLFKGLEAFDRKPPEKSIVQRVADAYEVLGLLEEKERVLEKYKDLF 246 (287)
Q Consensus 167 F~eM~~~g~~sv~~~tyNsmIsgY~k~G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~G~leeA~~ll~~m~~l~ 246 (287)
|++....+- ....+|..+-..|.+.|++++|+..|.+..+.. |+...+|..+...|...|+.++|...+++...+.
T Consensus 162 ~~~a~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 162 YTEMIKRAP--EDARGYSNRAAALAKLMSFPEAIADCNKAIEKD--PNFVRAYIRKATAQIAVKEYASALETLDAARTKD 237 (258)
T ss_dssp HHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCc--ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence 999987542 234578889999999999999999999998754 5545778888999999999999999999888877
Q ss_pred hhh
Q 047178 247 TEK 249 (287)
Q Consensus 247 ~~~ 249 (287)
..+
T Consensus 238 ~~~ 240 (258)
T 3uq3_A 238 AEV 240 (258)
T ss_dssp HHH
T ss_pred hhh
Confidence 544
No 22
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=98.47 E-value=3.2e-06 Score=76.17 Aligned_cols=153 Identities=11% Similarity=0.063 Sum_probs=110.5
Q ss_pred HHHHHHHHccCCCcchHHHHHHHHHHccCCCCHHHHHHHHHHHHHccchhhHHHHHHHHHHCCCCCChh-HHHHHHHHHH
Q 047178 77 NFLVNTLLDLKNSKEDVYGTLDAWVAWEQNFPVGSLKKALLALEKEQQWHRVVQVIKWMLSKGQGSTMG-TCGQLIRALD 155 (287)
Q Consensus 77 ~~Li~~l~~lg~~~~~v~~~Ld~~~~~~~~~~~~s~~~ai~~L~k~~~~~~A~qv~~~M~~~G~~pd~~-TYnaLI~~y~ 155 (287)
..|.+.+..+|+.+.++ ..+.. ........+..+...+...++.++|++.++.+...+..|+.. .+..+=..|.
T Consensus 38 ~~l~r~yi~~g~~~~al-~~~~~----~~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~ 112 (291)
T 3mkr_A 38 VFLYRAYLAQRKYGVVL-DEIKP----SSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYF 112 (291)
T ss_dssp HHHHHHHHHTTCHHHHH-HHSCT----TSCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHH-HHhcc----cCChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHH
Confidence 44667777778764332 22211 122223455556667788889999999999999888767544 4555558899
Q ss_pred HcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChHHHHHHHH----HHHHhcCC
Q 047178 156 MDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNNMLERLIKLFKGLEAFDRKPPEKSIVQRVA----DAYEVLGL 231 (287)
Q Consensus 156 K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI----~a~~k~G~ 231 (287)
..|+.++|.++|++ . .....|..+...|.+.|++++|.+.|+++.... ||. . ...+. ..+...|+
T Consensus 113 ~~g~~~~Al~~l~~---~----~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~-~-~~~l~~a~~~l~~~~~~ 181 (291)
T 3mkr_A 113 YDQNPDAALRTLHQ---G----DSLECMAMTVQILLKLDRLDLARKELKKMQDQD--EDA-T-LTQLATAWVSLAAGGEK 181 (291)
T ss_dssp HTTCHHHHHHHHTT---C----CSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTC-H-HHHHHHHHHHHHHCTTH
T ss_pred HCCCHHHHHHHHhC---C----CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--cCc-H-HHHHHHHHHHHHhCchH
Confidence 99999999999987 1 233468889999999999999999999999874 774 3 23333 33444599
Q ss_pred HHHHHHHHHHHhHH
Q 047178 232 LEEKERVLEKYKDL 245 (287)
Q Consensus 232 leeA~~ll~~m~~l 245 (287)
+++|..+|+++...
T Consensus 182 ~~eA~~~~~~~l~~ 195 (291)
T 3mkr_A 182 LQDAYYIFQEMADK 195 (291)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999987664
No 23
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=98.45 E-value=5.3e-06 Score=65.69 Aligned_cols=127 Identities=11% Similarity=0.109 Sum_probs=103.1
Q ss_pred HHHHHHHHccchhhHHHHHHHHHHCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHc
Q 047178 114 KALLALEKEQQWHRVVQVIKWMLSKGQGSTMGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRN 193 (287)
Q Consensus 114 ~ai~~L~k~~~~~~A~qv~~~M~~~G~~pd~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~ 193 (287)
.....+...|++++|++.++.+.+. ...+..+|..+...|...|+.++|..+|++....+- .....|..+...|.+.
T Consensus 13 ~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~a~~~~~~ 89 (186)
T 3as5_A 13 DKGISHAKAGRYSQAVMLLEQVYDA-DAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAP--DNVKVATVLGLTYVQV 89 (186)
T ss_dssp HHHHHHHHHTCHHHHHHHHTTTCCT-TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHh-CccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHh
Confidence 3445567789999999999877553 224677899999999999999999999999887542 2345688899999999
Q ss_pred CCHhHHHHHHHHHHHCCCCCChHHHHHHHHHHHHhcCCHHHHHHHHHHHhHH
Q 047178 194 NMLERLIKLFKGLEAFDRKPPEKSIVQRVADAYEVLGLLEEKERVLEKYKDL 245 (287)
Q Consensus 194 G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~G~leeA~~ll~~m~~l 245 (287)
|++++|.+.|+++.... |+....+..+...|...|++++|...+++...+
T Consensus 90 ~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 139 (186)
T 3as5_A 90 QKYDLAVPLLIKVAEAN--PINFNVRFRLGVALDNLGRFDEAIDSFKIALGL 139 (186)
T ss_dssp TCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcC--cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc
Confidence 99999999999988753 433567888889999999999999999886654
No 24
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=98.41 E-value=6.3e-06 Score=69.14 Aligned_cols=164 Identities=9% Similarity=0.047 Sum_probs=121.1
Q ss_pred HHHHHHHccCCCcchHHHHHHHHHHccCCCCHHHHHHHHHHHHHccchhhHHHHHHHHHHCCC--CCC----hhHHHHHH
Q 047178 78 FLVNTLLDLKNSKEDVYGTLDAWVAWEQNFPVGSLKKALLALEKEQQWHRVVQVIKWMLSKGQ--GST----MGTCGQLI 151 (287)
Q Consensus 78 ~Li~~l~~lg~~~~~v~~~Ld~~~~~~~~~~~~s~~~ai~~L~k~~~~~~A~qv~~~M~~~G~--~pd----~~TYnaLI 151 (287)
.+-..+...|+...++ ..+....... .....+..+-..+...|++++|++.+....+..- .++ ..+|..+-
T Consensus 10 ~~g~~~~~~~~~~~A~-~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 86 (258)
T 3uq3_A 10 AEGNKFYKARQFDEAI-EHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIG 86 (258)
T ss_dssp HHHHHHHHTTCHHHHH-HHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHH-HHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHH
Confidence 3445566667765553 2333333333 2344555666778899999999999998876421 122 57889999
Q ss_pred HHHHHcCCHHHHHHHHHHhhhCC------------------------CCCCChhhHHHHHHHHHHcCCHhHHHHHHHHHH
Q 047178 152 RALDMDHRAEEAHKFWEKRIGID------------------------LHSVPWQLCKSMIAIYYRNNMLERLIKLFKGLE 207 (287)
Q Consensus 152 ~~y~K~G~leeA~~lF~eM~~~g------------------------~~sv~~~tyNsmIsgY~k~G~~eeA~~Lf~eM~ 207 (287)
..|.+.|+.++|...|++..... ..+.....|..+-..|.+.|++++|+..|.+..
T Consensus 87 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~ 166 (258)
T 3uq3_A 87 NAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMI 166 (258)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 99999999999999999998732 111122468889999999999999999999998
Q ss_pred HCCCCCChHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHH
Q 047178 208 AFDRKPPEKSIVQRVADAYEVLGLLEEKERVLEKYKDLF 246 (287)
Q Consensus 208 ~~Gi~PD~~~Ty~sLI~a~~k~G~leeA~~ll~~m~~l~ 246 (287)
... |+...+|..+...|...|++++|...+++...+.
T Consensus 167 ~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 203 (258)
T 3uq3_A 167 KRA--PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD 203 (258)
T ss_dssp HHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hcC--cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 864 5445778889999999999999999999877653
No 25
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=98.38 E-value=4.1e-05 Score=66.49 Aligned_cols=132 Identities=8% Similarity=-0.039 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHccchhhHHHHHHHHHHCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHH
Q 047178 111 SLKKALLALEKEQQWHRVVQVIKWMLSKGQGSTMGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIY 190 (287)
Q Consensus 111 s~~~ai~~L~k~~~~~~A~qv~~~M~~~G~~pd~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY 190 (287)
.+..+...+...|++++|++.+....+..- .+..++..+-..|...|+.++|.++|++.....- .....|+.+...|
T Consensus 127 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~~~l~~~~ 203 (330)
T 3hym_B 127 AWIAYGHSFAVESEHDQAMAAYFTAAQLMK-GCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAP--EDPFVMHEVGVVA 203 (330)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHTT-TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT--TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCC--CChHHHHHHHHHH
Confidence 344455566777788888888777766432 2345566677778888888888888887766542 2335677777888
Q ss_pred HHcCCHhHHHHHHHHHHHCC-------CCCChHHHHHHHHHHHHhcCCHHHHHHHHHHHhHH
Q 047178 191 YRNNMLERLIKLFKGLEAFD-------RKPPEKSIVQRVADAYEVLGLLEEKERVLEKYKDL 245 (287)
Q Consensus 191 ~k~G~~eeA~~Lf~eM~~~G-------i~PD~~~Ty~sLI~a~~k~G~leeA~~ll~~m~~l 245 (287)
.+.|++++|...|.+..... ..|+...++..+...|...|++++|...+++...+
T Consensus 204 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 265 (330)
T 3hym_B 204 FQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVL 265 (330)
T ss_dssp HHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Confidence 88888888888887776531 01222345677777788888888888877765544
No 26
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=98.37 E-value=1.8e-05 Score=65.99 Aligned_cols=132 Identities=9% Similarity=0.026 Sum_probs=107.7
Q ss_pred HHHHHHHHHHHHHccchhhHHHHHHHHHHCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHH
Q 047178 109 VGSLKKALLALEKEQQWHRVVQVIKWMLSKGQGSTMGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIA 188 (287)
Q Consensus 109 ~~s~~~ai~~L~k~~~~~~A~qv~~~M~~~G~~pd~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIs 188 (287)
...+..+...+...|++++|++.++...+.. ..+..+|..+...|...|+.++|.++|+++...+- .....|..+..
T Consensus 57 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~a~ 133 (243)
T 2q7f_A 57 AIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGM--ENGDLFYMLGT 133 (243)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC--CSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC--CCHHHHHHHHH
Confidence 3344455666788999999999999988753 24677899999999999999999999999887542 23456888999
Q ss_pred HHHHcCCHhHHHHHHHHHHHCCCCCChHHHHHHHHHHHHhcCCHHHHHHHHHHHhHH
Q 047178 189 IYYRNNMLERLIKLFKGLEAFDRKPPEKSIVQRVADAYEVLGLLEEKERVLEKYKDL 245 (287)
Q Consensus 189 gY~k~G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~G~leeA~~ll~~m~~l 245 (287)
.|.+.|++++|..+|.++.... |+....+..+...|...|++++|...+++...+
T Consensus 134 ~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 188 (243)
T 2q7f_A 134 VLVKLEQPKLALPYLQRAVELN--ENDTEARFQFGMCLANEGMLDEALSQFAAVTEQ 188 (243)
T ss_dssp HHHHTSCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999999999999999988753 433467888899999999999999999876654
No 27
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=98.36 E-value=5.5e-06 Score=74.41 Aligned_cols=164 Identities=9% Similarity=0.023 Sum_probs=105.9
Q ss_pred HHHHHHHHccCCCcchHHHHHHHHHHccCCCCHHHHHHHHHHHHHccchhhHHHHHHHHHHCCCCCChhHHHHHHHHHHH
Q 047178 77 NFLVNTLLDLKNSKEDVYGTLDAWVAWEQNFPVGSLKKALLALEKEQQWHRVVQVIKWMLSKGQGSTMGTCGQLIRALDM 156 (287)
Q Consensus 77 ~~Li~~l~~lg~~~~~v~~~Ld~~~~~~~~~~~~s~~~ai~~L~k~~~~~~A~qv~~~M~~~G~~pd~~TYnaLI~~y~K 156 (287)
..+...+...|+...++ ..+....... .-....+..+-..+.+.|++++|++.|+...+.. ..+..+|..|...|.+
T Consensus 69 ~~~~~~~~~~g~~~~A~-~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~ 145 (365)
T 4eqf_A 69 FEEGLKRLKEGDLPVTI-LFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSYTN 145 (365)
T ss_dssp HHHHHHHHHHTCHHHHH-HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHH-HHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHc
Confidence 34455566666654442 2222222211 1123445555566677777777777777766642 2345667777777777
Q ss_pred cCCHHHHHHHHHHhhhC--------------------------------------------CCCCCChhhHHHHHHHHHH
Q 047178 157 DHRAEEAHKFWEKRIGI--------------------------------------------DLHSVPWQLCKSMIAIYYR 192 (287)
Q Consensus 157 ~G~leeA~~lF~eM~~~--------------------------------------------g~~sv~~~tyNsmIsgY~k 192 (287)
.|+.++|..+|+++... +-...+..+|+.+...|.+
T Consensus 146 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~ 225 (365)
T 4eqf_A 146 TSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHL 225 (365)
T ss_dssp TTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHH
Confidence 77777777777766431 1000023468888889999
Q ss_pred cCCHhHHHHHHHHHHHCCCCCChHHHHHHHHHHHHhcCCHHHHHHHHHHHhHH
Q 047178 193 NNMLERLIKLFKGLEAFDRKPPEKSIVQRVADAYEVLGLLEEKERVLEKYKDL 245 (287)
Q Consensus 193 ~G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~G~leeA~~ll~~m~~l 245 (287)
.|++++|++.|.+.... .|+...+|..+..+|...|++++|...+++...+
T Consensus 226 ~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 276 (365)
T 4eqf_A 226 SGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEI 276 (365)
T ss_dssp HTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 99999999999988775 3554577888899999999999999988876554
No 28
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=98.36 E-value=6.4e-06 Score=71.09 Aligned_cols=138 Identities=12% Similarity=0.130 Sum_probs=108.1
Q ss_pred HHHHHHHHHHHccchhhHHHHHHHHHHC------CCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHhhhC------CCCC
Q 047178 111 SLKKALLALEKEQQWHRVVQVIKWMLSK------GQGS-TMGTCGQLIRALDMDHRAEEAHKFWEKRIGI------DLHS 177 (287)
Q Consensus 111 s~~~ai~~L~k~~~~~~A~qv~~~M~~~------G~~p-d~~TYnaLI~~y~K~G~leeA~~lF~eM~~~------g~~s 177 (287)
.+..+-..+...|++++|.+.+....+. +..| ...+|..+-..|...|+.++|..+|++.... +-.+
T Consensus 71 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 150 (311)
T 3nf1_A 71 MLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHP 150 (311)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCCh
Confidence 3445566678899999999999887764 2223 3567889999999999999999999998753 1111
Q ss_pred CChhhHHHHHHHHHHcCCHhHHHHHHHHHHHC------CCCCChHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHHhh
Q 047178 178 VPWQLCKSMIAIYYRNNMLERLIKLFKGLEAF------DRKPPEKSIVQRVADAYEVLGLLEEKERVLEKYKDLFTE 248 (287)
Q Consensus 178 v~~~tyNsmIsgY~k~G~~eeA~~Lf~eM~~~------Gi~PD~~~Ty~sLI~a~~k~G~leeA~~ll~~m~~l~~~ 248 (287)
.....|+.+-..|.+.|++++|+++|.+.... +-.|+...++..+...|...|++++|...+++...+...
T Consensus 151 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 227 (311)
T 3nf1_A 151 DVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHE 227 (311)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 11246888999999999999999999999765 445665567888899999999999999999988876543
No 29
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=98.35 E-value=7.1e-06 Score=70.81 Aligned_cols=136 Identities=13% Similarity=0.158 Sum_probs=105.0
Q ss_pred HHHHHHHHHHccchhhHHHHHHHHHHC-------CCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhhhC------CCCCC
Q 047178 112 LKKALLALEKEQQWHRVVQVIKWMLSK-------GQGSTMGTCGQLIRALDMDHRAEEAHKFWEKRIGI------DLHSV 178 (287)
Q Consensus 112 ~~~ai~~L~k~~~~~~A~qv~~~M~~~-------G~~pd~~TYnaLI~~y~K~G~leeA~~lF~eM~~~------g~~sv 178 (287)
+..+...+...|++++|+.++..+.+. .......+|..+-..|...|+.++|..+|++.... +-.+.
T Consensus 30 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 109 (311)
T 3nf1_A 30 LHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPA 109 (311)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChH
Confidence 334455567788888888888887763 22234567888999999999999999999988653 11111
Q ss_pred ChhhHHHHHHHHHHcCCHhHHHHHHHHHHHC------CCCCChHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHHh
Q 047178 179 PWQLCKSMIAIYYRNNMLERLIKLFKGLEAF------DRKPPEKSIVQRVADAYEVLGLLEEKERVLEKYKDLFT 247 (287)
Q Consensus 179 ~~~tyNsmIsgY~k~G~~eeA~~Lf~eM~~~------Gi~PD~~~Ty~sLI~a~~k~G~leeA~~ll~~m~~l~~ 247 (287)
...+|+.+-..|...|++++|.+.|.+.... +-.|+...++..+...|...|++++|..++++...++.
T Consensus 110 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 184 (311)
T 3nf1_A 110 VAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQ 184 (311)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 1246889999999999999999999998764 44565556788888899999999999999998877754
No 30
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=98.35 E-value=5.9e-05 Score=65.51 Aligned_cols=161 Identities=9% Similarity=-0.084 Sum_probs=115.8
Q ss_pred HHHHHHccCCCcchHHHHHHHHHHccCCCCHHHHHHHHHHHHHcc-chhhHHHHHHHHHHCCCCCChhHHHHHHHHHHHc
Q 047178 79 LVNTLLDLKNSKEDVYGTLDAWVAWEQNFPVGSLKKALLALEKEQ-QWHRVVQVIKWMLSKGQGSTMGTCGQLIRALDMD 157 (287)
Q Consensus 79 Li~~l~~lg~~~~~v~~~Ld~~~~~~~~~~~~s~~~ai~~L~k~~-~~~~A~qv~~~M~~~G~~pd~~TYnaLI~~y~K~ 157 (287)
+...+...|+...++ ..+....... .-....+..+-..+...| ++++|.+.+....+.. ..+..+|..+-..|...
T Consensus 62 ~~~~~~~~~~~~~A~-~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~ 138 (330)
T 3hym_B 62 HIGTLVELNKANELF-YLSHKLVDLY-PSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVE 138 (330)
T ss_dssp HHHHHHHHTCHHHHH-HHHHHHHHHC-TTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHH-HHHHHHHHhC-cCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHc
Confidence 445555556554432 2222222221 112233444555667778 8999999999887643 23567789999999999
Q ss_pred CCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChHHHHHHHHHHHHhcCCHHHHHH
Q 047178 158 HRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNNMLERLIKLFKGLEAFDRKPPEKSIVQRVADAYEVLGLLEEKER 237 (287)
Q Consensus 158 G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~G~leeA~~ 237 (287)
|+.++|...|++.....- .....|..+-..|...|++++|.+.|.+..... |+...++..+...|...|++++|..
T Consensus 139 ~~~~~A~~~~~~a~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~~~~~~A~~ 214 (330)
T 3hym_B 139 SEHDQAMAAYFTAAQLMK--GCHLPMLYIGLEYGLTNNSKLAERFFSQALSIA--PEDPFVMHEVGVVAFQNGEWKTAEK 214 (330)
T ss_dssp TCHHHHHHHHHHHHHHTT--TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCHHHHHHHHHHHHHhcc--ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcccHHHHHH
Confidence 999999999999876542 122457778899999999999999999988753 5545778889999999999999999
Q ss_pred HHHHHhHHH
Q 047178 238 VLEKYKDLF 246 (287)
Q Consensus 238 ll~~m~~l~ 246 (287)
.+++...+.
T Consensus 215 ~~~~a~~~~ 223 (330)
T 3hym_B 215 WFLDALEKI 223 (330)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 998877765
No 31
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=98.34 E-value=1.7e-05 Score=70.58 Aligned_cols=163 Identities=8% Similarity=0.002 Sum_probs=104.7
Q ss_pred HHHHHHHccCCCcchHHHHHHHHHHccCCCCHHHHHHHHHHHHHccchhhHHHHHHHHHHCCCCCChhHHHHHHHHHHHc
Q 047178 78 FLVNTLLDLKNSKEDVYGTLDAWVAWEQNFPVGSLKKALLALEKEQQWHRVVQVIKWMLSKGQGSTMGTCGQLIRALDMD 157 (287)
Q Consensus 78 ~Li~~l~~lg~~~~~v~~~Ld~~~~~~~~~~~~s~~~ai~~L~k~~~~~~A~qv~~~M~~~G~~pd~~TYnaLI~~y~K~ 157 (287)
.+-..+...|+...++ ..+....... .-....+..+...+.+.|++++|+..+..+.+.. ..+..+|..+...|...
T Consensus 69 ~~~~~~~~~g~~~~A~-~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~ 145 (368)
T 1fch_A 69 EEGLRRLQEGDLPNAV-LLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNE 145 (368)
T ss_dssp HHHHHHHHTTCHHHHH-HHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCHHHHH-HHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHc
Confidence 3455556666654442 2222322221 1123344445555667777777777777766543 23556677777777777
Q ss_pred CCHHHHHHHHHHhhhCCCC-----------------------------------------------CC--ChhhHHHHHH
Q 047178 158 HRAEEAHKFWEKRIGIDLH-----------------------------------------------SV--PWQLCKSMIA 188 (287)
Q Consensus 158 G~leeA~~lF~eM~~~g~~-----------------------------------------------sv--~~~tyNsmIs 188 (287)
|+.++|.+.|+++...+-. +. ...+|+.+..
T Consensus 146 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~ 225 (368)
T 1fch_A 146 SLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGV 225 (368)
T ss_dssp TCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHH
Confidence 7777777777665542210 01 2346788888
Q ss_pred HHHHcCCHhHHHHHHHHHHHCCCCCChHHHHHHHHHHHHhcCCHHHHHHHHHHHhHH
Q 047178 189 IYYRNNMLERLIKLFKGLEAFDRKPPEKSIVQRVADAYEVLGLLEEKERVLEKYKDL 245 (287)
Q Consensus 189 gY~k~G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~G~leeA~~ll~~m~~l 245 (287)
.|.+.|++++|+..|.++... .|+...+|..+...|...|++++|...+++...+
T Consensus 226 ~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 280 (368)
T 1fch_A 226 LFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEAVAAYRRALEL 280 (368)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999999988765 3554567888888999999999999998876554
No 32
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=98.33 E-value=1.1e-05 Score=68.64 Aligned_cols=129 Identities=9% Similarity=-0.127 Sum_probs=102.7
Q ss_pred HHHHHHHHHHHccchhhHHHHHHHHHHCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHH
Q 047178 111 SLKKALLALEKEQQWHRVVQVIKWMLSKGQGSTMGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIY 190 (287)
Q Consensus 111 s~~~ai~~L~k~~~~~~A~qv~~~M~~~G~~pd~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY 190 (287)
.+..+-..+...|++++|++.|....+.. ..+..+|..|-..|...|++++|...|++....+- .....|..+-..|
T Consensus 45 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~~~la~~~ 121 (275)
T 1xnf_A 45 LLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDP--TYNYAHLNRGIAL 121 (275)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCc--cccHHHHHHHHHH
Confidence 34455666788999999999999988753 23678899999999999999999999999887542 2235688899999
Q ss_pred HHcCCHhHHHHHHHHHHHCCCCCChHHHHHHHHHHHHhcCCHHHHHHHHHHHhHH
Q 047178 191 YRNNMLERLIKLFKGLEAFDRKPPEKSIVQRVADAYEVLGLLEEKERVLEKYKDL 245 (287)
Q Consensus 191 ~k~G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~G~leeA~~ll~~m~~l 245 (287)
.+.|++++|.+.|+++... .|+. ..+...+..+...|++++|...+.+....
T Consensus 122 ~~~g~~~~A~~~~~~a~~~--~~~~-~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 122 YYGGRDKLAQDDLLAFYQD--DPND-PFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHTTCHHHHHHHHHHHHHH--CTTC-HHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHh--CCCC-hHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 9999999999999999874 4664 44555666677789999999999776554
No 33
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.32 E-value=1.1e-05 Score=60.20 Aligned_cols=96 Identities=18% Similarity=0.226 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChHHHHHHHHHH
Q 047178 146 TCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNNMLERLIKLFKGLEAFDRKPPEKSIVQRVADA 225 (287)
Q Consensus 146 TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a 225 (287)
.|..+...|...|++++|..+|+++...+. .+...|..+...|...|++++|..+|.++...+ |+....+..+...
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~ 78 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDP--RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PRSAEAWYNLGNA 78 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCC--cchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC--CCchHHHHHHHHH
Confidence 577888999999999999999999987542 234568889999999999999999999998764 4334668888899
Q ss_pred HHhcCCHHHHHHHHHHHhHH
Q 047178 226 YEVLGLLEEKERVLEKYKDL 245 (287)
Q Consensus 226 ~~k~G~leeA~~ll~~m~~l 245 (287)
|...|++++|..+++++..+
T Consensus 79 ~~~~~~~~~A~~~~~~~~~~ 98 (136)
T 2fo7_A 79 YYKQGDYDEAIEYYQKALEL 98 (136)
T ss_dssp HHTTTCHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHh
Confidence 99999999999999887654
No 34
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=98.31 E-value=1.1e-05 Score=70.21 Aligned_cols=124 Identities=9% Similarity=0.084 Sum_probs=104.1
Q ss_pred HHHccchhhHHHHHHHHHHCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHcCCHhH
Q 047178 119 LEKEQQWHRVVQVIKWMLSKGQGSTMGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNNMLER 198 (287)
Q Consensus 119 L~k~~~~~~A~qv~~~M~~~G~~pd~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~G~~ee 198 (287)
+...|++++|++++..+.+.. ..+..++..+...|.+.|+.++|..+|++....+- ....+|..+...|.+.|++++
T Consensus 148 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~ 224 (327)
T 3cv0_A 148 FAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRP--DDAQLWNKLGATLANGNRPQE 224 (327)
T ss_dssp TTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHHcCCHHH
Confidence 667788999999999988753 23678899999999999999999999999987542 234578999999999999999
Q ss_pred HHHHHHHHHHCCCCCChHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHHh
Q 047178 199 LIKLFKGLEAFDRKPPEKSIVQRVADAYEVLGLLEEKERVLEKYKDLFT 247 (287)
Q Consensus 199 A~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~G~leeA~~ll~~m~~l~~ 247 (287)
|...|.+..... |+...++..+...|...|++++|...+++...+..
T Consensus 225 A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 271 (327)
T 3cv0_A 225 ALDAYNRALDIN--PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQV 271 (327)
T ss_dssp HHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcC--CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 999999988753 54457788999999999999999999988766543
No 35
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=98.29 E-value=1.5e-05 Score=69.32 Aligned_cols=134 Identities=10% Similarity=0.036 Sum_probs=108.8
Q ss_pred HHHHHHHHHHHHHccchhhHHHHHHHHHHCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHH
Q 047178 109 VGSLKKALLALEKEQQWHRVVQVIKWMLSKGQGSTMGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIA 188 (287)
Q Consensus 109 ~~s~~~ai~~L~k~~~~~~A~qv~~~M~~~G~~pd~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIs 188 (287)
...+..+...+.+.|++++|++.+..+.+.. ..+..+|..+...|.+.|+.++|...|++....+- .....|..+..
T Consensus 172 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~~l~~ 248 (327)
T 3cv0_A 172 AQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDINP--GYVRVMYNMAV 248 (327)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CCHHHHHHHHH
Confidence 3445556667888999999999999988753 24567899999999999999999999999877542 23457888999
Q ss_pred HHHHcCCHhHHHHHHHHHHHCCCCCC------------hHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHHh
Q 047178 189 IYYRNNMLERLIKLFKGLEAFDRKPP------------EKSIVQRVADAYEVLGLLEEKERVLEKYKDLFT 247 (287)
Q Consensus 189 gY~k~G~~eeA~~Lf~eM~~~Gi~PD------------~~~Ty~sLI~a~~k~G~leeA~~ll~~m~~l~~ 247 (287)
.|.+.|++++|.+.|++..... |+ ...++..+..+|...|+.++|..++++....+.
T Consensus 249 ~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~ 317 (327)
T 3cv0_A 249 SYSNMSQYDLAAKQLVRAIYMQ--VGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFA 317 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH--TTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhC--CccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcc
Confidence 9999999999999999987643 33 346788999999999999999999876555543
No 36
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.29 E-value=8.8e-06 Score=68.85 Aligned_cols=137 Identities=12% Similarity=0.140 Sum_probs=106.9
Q ss_pred HHHHHHHHHHccchhhHHHHHHHHHHC------CCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHhhhC-----CC-CCC
Q 047178 112 LKKALLALEKEQQWHRVVQVIKWMLSK------GQGS-TMGTCGQLIRALDMDHRAEEAHKFWEKRIGI-----DL-HSV 178 (287)
Q Consensus 112 ~~~ai~~L~k~~~~~~A~qv~~~M~~~------G~~p-d~~TYnaLI~~y~K~G~leeA~~lF~eM~~~-----g~-~sv 178 (287)
+..+-..+...|++++|++.+....+. +-.| ...+|+.|-..|...|++++|.+.|++.... +. .+.
T Consensus 46 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 125 (283)
T 3edt_B 46 LNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPD 125 (283)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChH
Confidence 344555677889999999999887754 2223 3567899999999999999999999988653 11 011
Q ss_pred ChhhHHHHHHHHHHcCCHhHHHHHHHHHHHC------CCCCChHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHHhh
Q 047178 179 PWQLCKSMIAIYYRNNMLERLIKLFKGLEAF------DRKPPEKSIVQRVADAYEVLGLLEEKERVLEKYKDLFTE 248 (287)
Q Consensus 179 ~~~tyNsmIsgY~k~G~~eeA~~Lf~eM~~~------Gi~PD~~~Ty~sLI~a~~k~G~leeA~~ll~~m~~l~~~ 248 (287)
...+|..+-..|...|++++|.+.|.+.... +-.|+...++..+...|...|++++|..++++...+...
T Consensus 126 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~ 201 (283)
T 3edt_B 126 VAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHE 201 (283)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 1246888999999999999999999998765 335655567888899999999999999999998887544
No 37
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.28 E-value=2e-05 Score=58.26 Aligned_cols=90 Identities=13% Similarity=0.137 Sum_probs=43.2
Q ss_pred HHHHHHccchhhHHHHHHHHHHCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHcCC
Q 047178 116 LLALEKEQQWHRVVQVIKWMLSKGQGSTMGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNNM 195 (287)
Q Consensus 116 i~~L~k~~~~~~A~qv~~~M~~~G~~pd~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~G~ 195 (287)
...+...+++++|.+++..+.+.. ..+..++..+...|.+.|+.++|..+|+++...+- ....+|..+...|.+.|+
T Consensus 16 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~la~~~~~~~~ 92 (125)
T 1na0_A 16 GNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP--NNAEAWYNLGNAYYKQGD 92 (125)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC--ccHHHHHHHHHHHHHhcC
Confidence 334445555555555555544432 12334455555555555555555555555544321 112234445555555555
Q ss_pred HhHHHHHHHHHHH
Q 047178 196 LERLIKLFKGLEA 208 (287)
Q Consensus 196 ~eeA~~Lf~eM~~ 208 (287)
+++|...|.++..
T Consensus 93 ~~~A~~~~~~~~~ 105 (125)
T 1na0_A 93 YDEAIEYYQKALE 105 (125)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555443
No 38
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=98.28 E-value=3.7e-05 Score=65.36 Aligned_cols=132 Identities=8% Similarity=-0.164 Sum_probs=97.6
Q ss_pred HHHHHHHHHHHHHccchhhHHHHHHHHHHCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHH
Q 047178 109 VGSLKKALLALEKEQQWHRVVQVIKWMLSKGQGSTMGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIA 188 (287)
Q Consensus 109 ~~s~~~ai~~L~k~~~~~~A~qv~~~M~~~G~~pd~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIs 188 (287)
...+..+-..+...|++++|+..+....+.. ..+..+|..+-..|.+.|+.++|...|+++...+ +....+..++.
T Consensus 77 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~---~~~~~~~~~~~ 152 (275)
T 1xnf_A 77 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD---PNDPFRSLWLY 152 (275)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC---CCChHHHHHHH
Confidence 4455566667889999999999999988753 2356789999999999999999999999998754 22223444555
Q ss_pred HHHHcCCHhHHHHHHHHHHHCCCCCChHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHHh
Q 047178 189 IYYRNNMLERLIKLFKGLEAFDRKPPEKSIVQRVADAYEVLGLLEEKERVLEKYKDLFT 247 (287)
Q Consensus 189 gY~k~G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~G~leeA~~ll~~m~~l~~ 247 (287)
.+...|++++|...|.+..... .++ ...+. ++..+...+..++|...+.+......
T Consensus 153 ~~~~~~~~~~A~~~~~~~~~~~-~~~-~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~ 208 (275)
T 1xnf_A 153 LAEQKLDEKQAKEVLKQHFEKS-DKE-QWGWN-IVEFYLGNISEQTLMERLKADATDNT 208 (275)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHS-CCC-STHHH-HHHHHTTSSCHHHHHHHHHHHCCSHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcC-Ccc-hHHHH-HHHHHHHhcCHHHHHHHHHHHhcccc
Confidence 6677899999999998777643 233 24343 66677888888888888877655433
No 39
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=98.25 E-value=0.00022 Score=57.72 Aligned_cols=161 Identities=14% Similarity=0.034 Sum_probs=117.7
Q ss_pred HHHHHHccCCCcchHHHHHHHHHHccCCCCHHHHHHHHHHHHHccchhhHHHHHHHHHHCCCCCChhHHHHHHHHHHHcC
Q 047178 79 LVNTLLDLKNSKEDVYGTLDAWVAWEQNFPVGSLKKALLALEKEQQWHRVVQVIKWMLSKGQGSTMGTCGQLIRALDMDH 158 (287)
Q Consensus 79 Li~~l~~lg~~~~~v~~~Ld~~~~~~~~~~~~s~~~ai~~L~k~~~~~~A~qv~~~M~~~G~~pd~~TYnaLI~~y~K~G 158 (287)
|-..+...|+.+.++ ..+...... ++-....+..+-..+.+.|++++|++.+....... ..+...+..+-..+...+
T Consensus 11 lG~~~~~~g~~~~A~-~~~~~al~~-~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 87 (184)
T 3vtx_A 11 IGDKKRTKGDFDGAI-RAYKKVLKA-DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSANFMID 87 (184)
T ss_dssp HHHHHHHHTCHHHHH-HHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHH-HHHHHHHHh-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHcC
Confidence 344455556655442 222222221 11123445556667888999999999998877643 235567777888899999
Q ss_pred CHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChHHHHHHHHHHHHhcCCHHHHHHH
Q 047178 159 RAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNNMLERLIKLFKGLEAFDRKPPEKSIVQRVADAYEVLGLLEEKERV 238 (287)
Q Consensus 159 ~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~G~leeA~~l 238 (287)
+.++|...|.+.....- .....|..+-..|.+.|++++|++.|++..+. .|+...+|..+-..|.+.|++++|...
T Consensus 88 ~~~~a~~~~~~a~~~~~--~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~ 163 (184)
T 3vtx_A 88 EKQAAIDALQRAIALNT--VYADAYYKLGLVYDSMGEHDKAIEAYEKTISI--KPGFIRAYQSIGLAYEGKGLRDEAVKY 163 (184)
T ss_dssp CHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCc--cchHHHHHHHHHHHHhCCchhHHHHHHHHHHh--cchhhhHHHHHHHHHHHCCCHHHHHHH
Confidence 99999999999876542 23456888899999999999999999998875 465567788899999999999999999
Q ss_pred HHHHhHHH
Q 047178 239 LEKYKDLF 246 (287)
Q Consensus 239 l~~m~~l~ 246 (287)
+++..++-
T Consensus 164 ~~~al~~~ 171 (184)
T 3vtx_A 164 FKKALEKE 171 (184)
T ss_dssp HHHHHHTT
T ss_pred HHHHHhCC
Confidence 99876653
No 40
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.25 E-value=4.1e-05 Score=63.30 Aligned_cols=126 Identities=14% Similarity=0.078 Sum_probs=101.9
Q ss_pred HHHHHHccchhhHHHHHHHHHHCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHcCC
Q 047178 116 LLALEKEQQWHRVVQVIKWMLSKGQGSTMGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNNM 195 (287)
Q Consensus 116 i~~L~k~~~~~~A~qv~~~M~~~G~~pd~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~G~ 195 (287)
-..+...|++++|++.+... +.|+..+|..+-..|.+.|+.++|...|++....+- .....|..+-..|.+.|+
T Consensus 13 g~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~--~~~~~~~~lg~~~~~~~~ 86 (213)
T 1hh8_A 13 GVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK--HLAVAYFQRGMLYYQTEK 86 (213)
T ss_dssp HHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc--cchHHHHHHHHHHHHccc
Confidence 33466789999999888765 467888999999999999999999999999876542 233568889999999999
Q ss_pred HhHHHHHHHHHHHCC--------------CCCChHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHHh
Q 047178 196 LERLIKLFKGLEAFD--------------RKPPEKSIVQRVADAYEVLGLLEEKERVLEKYKDLFT 247 (287)
Q Consensus 196 ~eeA~~Lf~eM~~~G--------------i~PD~~~Ty~sLI~a~~k~G~leeA~~ll~~m~~l~~ 247 (287)
+++|++.|.+..... ..|+....+..+-.+|...|++++|...+++...+.-
T Consensus 87 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 152 (213)
T 1hh8_A 87 YDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS 152 (213)
T ss_dssp HHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCc
Confidence 999999999988743 3344445677888899999999999999988766543
No 41
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.25 E-value=1.3e-05 Score=67.88 Aligned_cols=135 Identities=13% Similarity=0.145 Sum_probs=104.2
Q ss_pred HHHHHHHHHHHccchhhHHHHHHHHHHC------CCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHhhhC------CCCC
Q 047178 111 SLKKALLALEKEQQWHRVVQVIKWMLSK------GQGS-TMGTCGQLIRALDMDHRAEEAHKFWEKRIGI------DLHS 177 (287)
Q Consensus 111 s~~~ai~~L~k~~~~~~A~qv~~~M~~~------G~~p-d~~TYnaLI~~y~K~G~leeA~~lF~eM~~~------g~~s 177 (287)
.+..+-..+...|++++|++.+....+. ...| ...+|..|-..|...|++++|..+|++.... ...+
T Consensus 87 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 166 (283)
T 3edt_B 87 TLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDP 166 (283)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 4455666778899999999999887754 1122 3567888999999999999999999998753 1111
Q ss_pred CChhhHHHHHHHHHHcCCHhHHHHHHHHHHHC-----------------------------------------------C
Q 047178 178 VPWQLCKSMIAIYYRNNMLERLIKLFKGLEAF-----------------------------------------------D 210 (287)
Q Consensus 178 v~~~tyNsmIsgY~k~G~~eeA~~Lf~eM~~~-----------------------------------------------G 210 (287)
....+|..+-..|.+.|++++|.++|.+.... .
T Consensus 167 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (283)
T 3edt_B 167 NVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV 246 (283)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC
Confidence 11246888999999999999999999988753 1
Q ss_pred CCCChHHHHHHHHHHHHhcCCHHHHHHHHHHHhHH
Q 047178 211 RKPPEKSIVQRVADAYEVLGLLEEKERVLEKYKDL 245 (287)
Q Consensus 211 i~PD~~~Ty~sLI~a~~k~G~leeA~~ll~~m~~l 245 (287)
..|+...++..+...|...|++++|..++++...+
T Consensus 247 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 247 DSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 23555567888889999999999999999886654
No 42
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.23 E-value=6.4e-05 Score=55.51 Aligned_cols=98 Identities=17% Similarity=0.214 Sum_probs=82.9
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChHHHHHHHH
Q 047178 144 MGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNNMLERLIKLFKGLEAFDRKPPEKSIVQRVA 223 (287)
Q Consensus 144 ~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI 223 (287)
..+|..+...|...|+.++|.++|+++...+- ....+|..+...|.+.|++++|..+|+++.... |+...++..+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la 84 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP--NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAWYNLG 84 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc--CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--CccHHHHHHHH
Confidence 46788889999999999999999999987542 234578889999999999999999999998753 44356788899
Q ss_pred HHHHhcCCHHHHHHHHHHHhHH
Q 047178 224 DAYEVLGLLEEKERVLEKYKDL 245 (287)
Q Consensus 224 ~a~~k~G~leeA~~ll~~m~~l 245 (287)
..|...|++++|...+++...+
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 85 NAYYKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHh
Confidence 9999999999999999887665
No 43
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.18 E-value=0.0001 Score=57.85 Aligned_cols=132 Identities=9% Similarity=-0.041 Sum_probs=101.8
Q ss_pred HHHHHHHHccchhhHHHHHHHHHHCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHc
Q 047178 114 KALLALEKEQQWHRVVQVIKWMLSKGQGSTMGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRN 193 (287)
Q Consensus 114 ~ai~~L~k~~~~~~A~qv~~~M~~~G~~pd~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~ 193 (287)
..-..+...|++++|...+....+.. ..+..+|..+-..|...|+.++|...|++....+- .....|..+-..|.+.
T Consensus 18 ~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~~~a~~~~~~ 94 (166)
T 1a17_A 18 TQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK--KYIKGYYRRAASNMAL 94 (166)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc--ccHHHHHHHHHHHHHh
Confidence 34445678899999999999877642 23577888899999999999999999999877542 2334688888899999
Q ss_pred CCHhHHHHHHHHHHHCCCCCChHHHHH--HHHHHHHhcCCHHHHHHHHHHHhHHHhhhh
Q 047178 194 NMLERLIKLFKGLEAFDRKPPEKSIVQ--RVADAYEVLGLLEEKERVLEKYKDLFTEKE 250 (287)
Q Consensus 194 G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~--sLI~a~~k~G~leeA~~ll~~m~~l~~~~~ 250 (287)
|++++|...|.+..... |+....+. .+...+...|++++|...+.....++..+-
T Consensus 95 ~~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 151 (166)
T 1a17_A 95 GKFRAALRDYETVVKVK--PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLD 151 (166)
T ss_dssp TCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred ccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHhcccc
Confidence 99999999999988753 43223343 333347788999999999998888876544
No 44
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=98.18 E-value=0.00018 Score=61.19 Aligned_cols=129 Identities=15% Similarity=0.006 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHccchhhHHHHHHHHHHCCCCCChhHHHHHHHHHHHc-----------CCHHHHHHHHHHhhhCCCCCCC
Q 047178 111 SLKKALLALEKEQQWHRVVQVIKWMLSKGQGSTMGTCGQLIRALDMD-----------HRAEEAHKFWEKRIGIDLHSVP 179 (287)
Q Consensus 111 s~~~ai~~L~k~~~~~~A~qv~~~M~~~G~~pd~~TYnaLI~~y~K~-----------G~leeA~~lF~eM~~~g~~sv~ 179 (287)
.+..+-..+.+.|++++|+..++..++.. +.+..+|..|-..|.+. |+.++|...|++....+- ..
T Consensus 41 a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P--~~ 117 (217)
T 2pl2_A 41 ALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNP--RY 117 (217)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCT--TC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCc--cc
Confidence 34444555677888888888888877642 22456777788888888 888888888888876541 22
Q ss_pred hhhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChHHHHHHHHHHHHhcCCHHHHHHHHHHHhHH
Q 047178 180 WQLCKSMIAIYYRNNMLERLIKLFKGLEAFDRKPPEKSIVQRVADAYEVLGLLEEKERVLEKYKDL 245 (287)
Q Consensus 180 ~~tyNsmIsgY~k~G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~G~leeA~~ll~~m~~l 245 (287)
...|..+=..|.+.|++++|+..|++..+.. .+ ...+..+-..|...|++++|...+++...+
T Consensus 118 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 180 (217)
T 2pl2_A 118 APLHLQRGLVYALLGERDKAEASLKQALALE--DT-PEIRSALAELYLSMGRLDEALAQYAKALEQ 180 (217)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cc-hHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3457777778888888899988888887776 44 366777888888888888888888876554
No 45
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=98.14 E-value=0.00026 Score=61.81 Aligned_cols=125 Identities=8% Similarity=-0.023 Sum_probs=100.3
Q ss_pred HHHHHHccchhhHHHHHHHHHHCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHcCC
Q 047178 116 LLALEKEQQWHRVVQVIKWMLSKGQGSTMGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNNM 195 (287)
Q Consensus 116 i~~L~k~~~~~~A~qv~~~M~~~G~~pd~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~G~ 195 (287)
...+...|++++|+++++.+.+.. +.+..++..+-..|.+.|+.++|...|++.....- ....+|..+...|.+.|+
T Consensus 127 a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~la~~~~~~~~ 203 (359)
T 3ieg_A 127 ALDAFDGADYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKS--DNTEAFYKISTLYYQLGD 203 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCS--CCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCC
Confidence 356788999999999999988753 34677899999999999999999999999987642 234578899999999999
Q ss_pred HhHHHHHHHHHHHCCCCCChHHHHH------------HHHHHHHhcCCHHHHHHHHHHHhHH
Q 047178 196 LERLIKLFKGLEAFDRKPPEKSIVQ------------RVADAYEVLGLLEEKERVLEKYKDL 245 (287)
Q Consensus 196 ~eeA~~Lf~eM~~~Gi~PD~~~Ty~------------sLI~a~~k~G~leeA~~ll~~m~~l 245 (287)
+++|...|.+.... .|+....+. .+...+...|++++|...+++...+
T Consensus 204 ~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 263 (359)
T 3ieg_A 204 HELSLSEVRECLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT 263 (359)
T ss_dssp HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh--CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 99999999998864 344323332 2255688999999999999876654
No 46
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=98.13 E-value=9.5e-05 Score=69.25 Aligned_cols=132 Identities=10% Similarity=0.016 Sum_probs=107.7
Q ss_pred HHHHHHHHHHHHccchhhHHHHHHHHHHCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHH
Q 047178 110 GSLKKALLALEKEQQWHRVVQVIKWMLSKGQGSTMGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAI 189 (287)
Q Consensus 110 ~s~~~ai~~L~k~~~~~~A~qv~~~M~~~G~~pd~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsg 189 (287)
..+..+-..+...|++++|++.+....+.. ..+..+|..+-..|...|+.++|...|++....+- .....|..+-..
T Consensus 277 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~~la~~ 353 (537)
T 3fp2_A 277 NSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNP--ENVYPYIQLACL 353 (537)
T ss_dssp HHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCSHHHHHHHHH
T ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHH
Confidence 344445556678899999999999987753 24577899999999999999999999999987542 223568889999
Q ss_pred HHHcCCHhHHHHHHHHHHHCCCCCChHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHH
Q 047178 190 YYRNNMLERLIKLFKGLEAFDRKPPEKSIVQRVADAYEVLGLLEEKERVLEKYKDLF 246 (287)
Q Consensus 190 Y~k~G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~G~leeA~~ll~~m~~l~ 246 (287)
|.+.|++++|.++|.++.... |+...++..+...|...|++++|...+++...+.
T Consensus 354 ~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 408 (537)
T 3fp2_A 354 LYKQGKFTESEAFFNETKLKF--PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLE 408 (537)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC
Confidence 999999999999999998763 5444678888999999999999999999877665
No 47
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=98.12 E-value=7.4e-05 Score=69.27 Aligned_cols=133 Identities=12% Similarity=0.037 Sum_probs=105.1
Q ss_pred HHHHHHHHHHHHHccchhhHHHHHHHHHHCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHH
Q 047178 109 VGSLKKALLALEKEQQWHRVVQVIKWMLSKGQGSTMGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIA 188 (287)
Q Consensus 109 ~~s~~~ai~~L~k~~~~~~A~qv~~~M~~~G~~pd~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIs 188 (287)
...+..+...+...|++++|++.+..+.+.. ..+..+|..+...|.+.|+.++|...|++....+- .....|..+..
T Consensus 270 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~l~~ 346 (514)
T 2gw1_A 270 VNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDP--ENIFPYIQLAC 346 (514)
T ss_dssp HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCS--SCSHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCh--hhHHHHHHHHH
Confidence 4445556667788899999999998887643 23567888999999999999999999999887542 23346888899
Q ss_pred HHHHcCCHhHHHHHHHHHHHCCCCCChHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHH
Q 047178 189 IYYRNNMLERLIKLFKGLEAFDRKPPEKSIVQRVADAYEVLGLLEEKERVLEKYKDLF 246 (287)
Q Consensus 189 gY~k~G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~G~leeA~~ll~~m~~l~ 246 (287)
.|.+.|++++|..+|.++... .|+...++..+...|...|++++|...+++...+.
T Consensus 347 ~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 402 (514)
T 2gw1_A 347 LAYRENKFDDCETLFSEAKRK--FPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELE 402 (514)
T ss_dssp HTTTTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH--cccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhh
Confidence 999999999999999998865 34334567888889999999999999998876654
No 48
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=98.11 E-value=0.00029 Score=61.50 Aligned_cols=131 Identities=14% Similarity=0.062 Sum_probs=102.8
Q ss_pred HHHHHHHHHHHHHccchhhHHHHHHHHHHCCCCC----ChhHHHHH------------HHHHHHcCCHHHHHHHHHHhhh
Q 047178 109 VGSLKKALLALEKEQQWHRVVQVIKWMLSKGQGS----TMGTCGQL------------IRALDMDHRAEEAHKFWEKRIG 172 (287)
Q Consensus 109 ~~s~~~ai~~L~k~~~~~~A~qv~~~M~~~G~~p----d~~TYnaL------------I~~y~K~G~leeA~~lF~eM~~ 172 (287)
...+..+...+...|++++|++.+....+. .| +...+..+ ...|...|+.++|.++|+++..
T Consensus 71 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 148 (359)
T 3ieg_A 71 TAARLQRGHLLLKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILE 148 (359)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 344555666778889999999999988764 34 33344444 4788899999999999999877
Q ss_pred CCCCCCChhhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChHHHHHHHHHHHHhcCCHHHHHHHHHHHhHH
Q 047178 173 IDLHSVPWQLCKSMIAIYYRNNMLERLIKLFKGLEAFDRKPPEKSIVQRVADAYEVLGLLEEKERVLEKYKDL 245 (287)
Q Consensus 173 ~g~~sv~~~tyNsmIsgY~k~G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~G~leeA~~ll~~m~~l 245 (287)
.+- .....|..+-..|.+.|++++|...|.+.... .|+...++..+...|...|++++|...+++...+
T Consensus 149 ~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 217 (359)
T 3ieg_A 149 VCV--WDAELRELRAECFIKEGEPRKAISDLKAASKL--KSDNTEAFYKISTLYYQLGDHELSLSEVRECLKL 217 (359)
T ss_dssp HCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred hCC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 542 23356888999999999999999999998875 3544577888999999999999999999876654
No 49
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=98.07 E-value=0.00031 Score=62.63 Aligned_cols=134 Identities=11% Similarity=-0.042 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHccchhhHHHHHHHHHHCCCCCChhHHHHHHHHHH-HcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHH
Q 047178 111 SLKKALLALEKEQQWHRVVQVIKWMLSKGQGSTMGTCGQLIRALD-MDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAI 189 (287)
Q Consensus 111 s~~~ai~~L~k~~~~~~A~qv~~~M~~~G~~pd~~TYnaLI~~y~-K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsg 189 (287)
.+......+.+.|++++|..+|+..++..- .+...|........ ..|+.++|..+|++.....- .....|..++..
T Consensus 136 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~~~~~ 212 (308)
T 2ond_A 136 VYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYG--DIPEYVLAYIDY 212 (308)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHT--TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CcHHHHHHHHHH
Confidence 344455555666667777777766655321 22333332222211 24777777777776654321 122457777777
Q ss_pred HHHcCCHhHHHHHHHHHHHCC-CCCC-hHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHHh
Q 047178 190 YYRNNMLERLIKLFKGLEAFD-RKPP-EKSIVQRVADAYEVLGLLEEKERVLEKYKDLFT 247 (287)
Q Consensus 190 Y~k~G~~eeA~~Lf~eM~~~G-i~PD-~~~Ty~sLI~a~~k~G~leeA~~ll~~m~~l~~ 247 (287)
+.+.|++++|..+|++..... +.|+ ....|..++..+...|+.++|..++.+...++-
T Consensus 213 ~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p 272 (308)
T 2ond_A 213 LSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFR 272 (308)
T ss_dssp HHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTT
T ss_pred HHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcc
Confidence 888888888888888877763 4553 335677777777778888888888777776654
No 50
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=98.07 E-value=4.5e-05 Score=70.75 Aligned_cols=129 Identities=11% Similarity=0.005 Sum_probs=107.8
Q ss_pred HHHHHHHHHHHccchhhHHHHHHHHHHCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHH
Q 047178 111 SLKKALLALEKEQQWHRVVQVIKWMLSKGQGSTMGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIY 190 (287)
Q Consensus 111 s~~~ai~~L~k~~~~~~A~qv~~~M~~~G~~pd~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY 190 (287)
.+..+...+...|++++|++++..+.+.. |+..+|..+...|...|+.++|...|++....+- .....|..+...|
T Consensus 239 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~ 314 (514)
T 2gw1_A 239 SLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLDS--NNSSVYYHRGQMN 314 (514)
T ss_dssp HHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCT--TCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCc--CCHHHHHHHHHHH
Confidence 34455566788999999999999998765 3478899999999999999999999999987642 2335788999999
Q ss_pred HHcCCHhHHHHHHHHHHHCCCCCChHHHHHHHHHHHHhcCCHHHHHHHHHHHhHH
Q 047178 191 YRNNMLERLIKLFKGLEAFDRKPPEKSIVQRVADAYEVLGLLEEKERVLEKYKDL 245 (287)
Q Consensus 191 ~k~G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~G~leeA~~ll~~m~~l 245 (287)
.+.|++++|+..|.+..... |+...++..+...|...|++++|..++++...+
T Consensus 315 ~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 367 (514)
T 2gw1_A 315 FILQNYDQAGKDFDKAKELD--PENIFPYIQLACLAYRENKFDDCETLFSEAKRK 367 (514)
T ss_dssp HHTTCTTHHHHHHHHHHHTC--SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHhC--hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999998764 433467888899999999999999999887654
No 51
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=98.05 E-value=0.0003 Score=59.03 Aligned_cols=129 Identities=12% Similarity=0.017 Sum_probs=100.2
Q ss_pred HHHHHHHHHccchhhHHHHHHHHHHCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHH
Q 047178 113 KKALLALEKEQQWHRVVQVIKWMLSKGQGSTMGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYR 192 (287)
Q Consensus 113 ~~ai~~L~k~~~~~~A~qv~~~M~~~G~~pd~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k 192 (287)
...-..+...|++++|++.|...++..-.++..+|.-+-..|.+.|+.++|.+.|++....+- .....|..+-..|.+
T Consensus 11 ~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~ 88 (228)
T 4i17_A 11 KNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNY--NLANAYIGKSAAYRD 88 (228)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC--SHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCc--chHHHHHHHHHHHHH
Confidence 333445677899999999999888765436666776688889999999999999999887542 223468888999999
Q ss_pred cCCHhHHHHHHHHHHHCCCCCChH-------HHHHHHHHHHHhcCCHHHHHHHHHHHhHH
Q 047178 193 NNMLERLIKLFKGLEAFDRKPPEK-------SIVQRVADAYEVLGLLEEKERVLEKYKDL 245 (287)
Q Consensus 193 ~G~~eeA~~Lf~eM~~~Gi~PD~~-------~Ty~sLI~a~~k~G~leeA~~ll~~m~~l 245 (287)
.|++++|++.|++.... .|+.. ..|..+-..+...|++++|...+++...+
T Consensus 89 ~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 146 (228)
T 4i17_A 89 MKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV 146 (228)
T ss_dssp TTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS
T ss_pred cccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc
Confidence 99999999999998764 35533 23666667788899999999999876543
No 52
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=98.05 E-value=0.00041 Score=56.07 Aligned_cols=128 Identities=10% Similarity=0.026 Sum_probs=102.9
Q ss_pred HHHHHHHHHccchhhHHHHHHHHHHCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHH
Q 047178 113 KKALLALEKEQQWHRVVQVIKWMLSKGQGSTMGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYR 192 (287)
Q Consensus 113 ~~ai~~L~k~~~~~~A~qv~~~M~~~G~~pd~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k 192 (287)
..+=..+...|++++|++.|+..++.. +-+..+|..|-..|.+.|+.++|...|.+...... .....|..+-..+..
T Consensus 9 ~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 85 (184)
T 3vtx_A 9 MDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDT--TSAEAYYILGSANFM 85 (184)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc--hhHHHHHHHHHHHHH
Confidence 334445678899999999999987752 23567899999999999999999999999876542 233467777888999
Q ss_pred cCCHhHHHHHHHHHHHCCCCCChHHHHHHHHHHHHhcCCHHHHHHHHHHHhHH
Q 047178 193 NNMLERLIKLFKGLEAFDRKPPEKSIVQRVADAYEVLGLLEEKERVLEKYKDL 245 (287)
Q Consensus 193 ~G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~G~leeA~~ll~~m~~l 245 (287)
.+++++|.+.+.+.... .|+....+..+-..|...|++++|...+++...+
T Consensus 86 ~~~~~~a~~~~~~a~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~ 136 (184)
T 3vtx_A 86 IDEKQAAIDALQRAIAL--NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISI 136 (184)
T ss_dssp TTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHh
Confidence 99999999999988764 3554566888888999999999999999876654
No 53
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=98.04 E-value=0.00011 Score=62.54 Aligned_cols=163 Identities=10% Similarity=0.076 Sum_probs=115.3
Q ss_pred HHHHHccCCCcchHHHHHHHHHHccCCCCHHHHHHHHHHHHHccchhhHHHHHHHHHHCCCCCCh--hHHHHHHHHHHHc
Q 047178 80 VNTLLDLKNSKEDVYGTLDAWVAWEQNFPVGSLKKALLALEKEQQWHRVVQVIKWMLSKGQGSTM--GTCGQLIRALDMD 157 (287)
Q Consensus 80 i~~l~~lg~~~~~v~~~Ld~~~~~~~~~~~~s~~~ai~~L~k~~~~~~A~qv~~~M~~~G~~pd~--~TYnaLI~~y~K~ 157 (287)
-..+...|+...++ ..+......... ....+..+-..+...|++++|++.+....+.+-.++. .+|..+-..|.+.
T Consensus 10 a~~~~~~~~~~~A~-~~~~~~l~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~ 87 (272)
T 3u4t_A 10 ADFLFKNNNYAEAI-EVFNKLEAKKYN-SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKK 87 (272)
T ss_dssp HHHHHTTTCHHHHH-HHHHHHHHTTCC-CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCHHHHH-HHHHHHHHhCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHc
Confidence 34555666655442 223333222111 1224445555788999999999999998885433332 2488899999999
Q ss_pred CCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChHHHHHHHHHHHHhcCCHHHHHH
Q 047178 158 HRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNNMLERLIKLFKGLEAFDRKPPEKSIVQRVADAYEVLGLLEEKER 237 (287)
Q Consensus 158 G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~G~leeA~~ 237 (287)
|+.++|...|++....+- .....|..+-..|.+.|++++|++.|.+.... .|+....+..+...+...+++++|..
T Consensus 88 ~~~~~A~~~~~~a~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~ 163 (272)
T 3u4t_A 88 GQDSLAIQQYQAAVDRDT--TRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP--TTTDPKVFYELGQAYYYNKEYVKADS 163 (272)
T ss_dssp TCHHHHHHHHHHHHHHST--TCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS--SCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ccHHHHHHHHHHHHhcCc--ccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc--CCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999887542 22357899999999999999999999987765 56555556666524555669999999
Q ss_pred HHHHHhHHHhh
Q 047178 238 VLEKYKDLFTE 248 (287)
Q Consensus 238 ll~~m~~l~~~ 248 (287)
.+++...+...
T Consensus 164 ~~~~a~~~~p~ 174 (272)
T 3u4t_A 164 SFVKVLELKPN 174 (272)
T ss_dssp HHHHHHHHSTT
T ss_pred HHHHHHHhCcc
Confidence 99988877543
No 54
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=98.04 E-value=9.9e-05 Score=69.11 Aligned_cols=126 Identities=12% Similarity=0.036 Sum_probs=105.4
Q ss_pred HHHHHHHHccchhhHHHHHHHHHHCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHc
Q 047178 114 KALLALEKEQQWHRVVQVIKWMLSKGQGSTMGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRN 193 (287)
Q Consensus 114 ~ai~~L~k~~~~~~A~qv~~~M~~~G~~pd~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~ 193 (287)
.+-..+...|++++|++.+....+. .|+..+|..+-..|...|+.++|.+.|++....+- ....+|..+...|.+.
T Consensus 248 ~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~~ 323 (537)
T 3fp2_A 248 YTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNP--EYPPTYYHRGQMYFIL 323 (537)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCC--CCHHHHHHHHHHHHhc
Confidence 3344567789999999999998875 46678899999999999999999999999987542 2335789999999999
Q ss_pred CCHhHHHHHHHHHHHCCCCCChHHHHHHHHHHHHhcCCHHHHHHHHHHHhHH
Q 047178 194 NMLERLIKLFKGLEAFDRKPPEKSIVQRVADAYEVLGLLEEKERVLEKYKDL 245 (287)
Q Consensus 194 G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~G~leeA~~ll~~m~~l 245 (287)
|++++|.+.|.+..... |+...++..+...|...|++++|..++++...+
T Consensus 324 ~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 373 (537)
T 3fp2_A 324 QDYKNAKEDFQKAQSLN--PENVYPYIQLACLLYKQGKFTESEAFFNETKLK 373 (537)
T ss_dssp TCHHHHHHHHHHHHHHC--TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999999999998754 443466888999999999999999999877655
No 55
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=98.01 E-value=0.00019 Score=60.93 Aligned_cols=127 Identities=13% Similarity=0.059 Sum_probs=104.1
Q ss_pred HHHHHHHHccchhhHHHHHHHHHHCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHc
Q 047178 114 KALLALEKEQQWHRVVQVIKWMLSKGQGSTMGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRN 193 (287)
Q Consensus 114 ~ai~~L~k~~~~~~A~qv~~~M~~~G~~pd~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~ 193 (287)
..-..+.+.|++++|+..+...++.. +.+...|..+-..|.+.|+.++|...|++....+- .....|..+-..|.+.
T Consensus 10 ~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P--~~~~a~~~lg~~~~~~ 86 (217)
T 2pl2_A 10 RLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVARTP--RYLGGYMVLSEAYVAL 86 (217)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHHh
Confidence 34445778899999999999887642 23567888899999999999999999999887542 2334688888899999
Q ss_pred -----------CCHhHHHHHHHHHHHCCCCCChHHHHHHHHHHHHhcCCHHHHHHHHHHHhHH
Q 047178 194 -----------NMLERLIKLFKGLEAFDRKPPEKSIVQRVADAYEVLGLLEEKERVLEKYKDL 245 (287)
Q Consensus 194 -----------G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~G~leeA~~ll~~m~~l 245 (287)
|++++|+..|++..+. .|+....+..+-..|...|++++|...+++...+
T Consensus 87 ~~~~~~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 147 (217)
T 2pl2_A 87 YRQAEDRERGKGYLEQALSVLKDAERV--NPRYAPLHLQRGLVYALLGERDKAEASLKQALAL 147 (217)
T ss_dssp HHTCSSHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhhhhhhcccccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Confidence 9999999999998874 5765677888888999999999999999887665
No 56
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=98.01 E-value=0.00062 Score=60.66 Aligned_cols=124 Identities=10% Similarity=-0.015 Sum_probs=96.0
Q ss_pred HHHHHHHccchhhHHHHHHHHHHCCCCCC-hh-HHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHH-H
Q 047178 115 ALLALEKEQQWHRVVQVIKWMLSKGQGST-MG-TCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIY-Y 191 (287)
Q Consensus 115 ai~~L~k~~~~~~A~qv~~~M~~~G~~pd-~~-TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY-~ 191 (287)
....+.+.|++++|.++|+..++ +.|+ .. +|..+...+.+.|++++|..+|++....+- .....|....... .
T Consensus 105 ~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p--~~~~~~~~~a~~~~~ 180 (308)
T 2ond_A 105 YADYEESRMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR--TRHHVYVTAALMEYY 180 (308)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHT--SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT--CCTHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHh--ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHH
Confidence 34455678899999999999887 4454 33 799999999999999999999999987542 2233454333322 2
Q ss_pred HcCCHhHHHHHHHHHHHCCCCCChHHHHHHHHHHHHhcCCHHHHHHHHHHHhH
Q 047178 192 RNNMLERLIKLFKGLEAFDRKPPEKSIVQRVADAYEVLGLLEEKERVLEKYKD 244 (287)
Q Consensus 192 k~G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~G~leeA~~ll~~m~~ 244 (287)
..|++++|..+|+...+. .|+....+..++..+.+.|++++|..+|++...
T Consensus 181 ~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~ 231 (308)
T 2ond_A 181 CSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLT 231 (308)
T ss_dssp TSCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 369999999999998764 465567788999999999999999999988766
No 57
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=97.99 E-value=0.0002 Score=60.94 Aligned_cols=165 Identities=13% Similarity=0.026 Sum_probs=117.2
Q ss_pred HHHHHHHHccCCCcchHHHHHHHHHHccC--CCCHHHHHHHHHHHHHccchhhHHHHHHHHHHCCCCCChhHHHHHHHHH
Q 047178 77 NFLVNTLLDLKNSKEDVYGTLDAWVAWEQ--NFPVGSLKKALLALEKEQQWHRVVQVIKWMLSKGQGSTMGTCGQLIRAL 154 (287)
Q Consensus 77 ~~Li~~l~~lg~~~~~v~~~Ld~~~~~~~--~~~~~s~~~ai~~L~k~~~~~~A~qv~~~M~~~G~~pd~~TYnaLI~~y 154 (287)
..|-..+...|+...++ ..+......+. .+....+..+-..+...|++++|++.+....+.. ..+..+|..+-..|
T Consensus 41 ~~l~~~~~~~~~~~~A~-~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~ 118 (272)
T 3u4t_A 41 NRRAVCYYELAKYDLAQ-KDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYF 118 (272)
T ss_dssp HHHHHHHHHTTCHHHHH-HHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHH-HHHHHHHhccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHH
Confidence 33555666667765553 23333333221 1222335566677888999999999999988753 23557899999999
Q ss_pred HHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChHHHHHHHHHHHHhcCC---
Q 047178 155 DMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNNMLERLIKLFKGLEAFDRKPPEKSIVQRVADAYEVLGL--- 231 (287)
Q Consensus 155 ~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~G~--- 231 (287)
.+.|++++|...|++....+- .....|..+-..+...+++++|.+.|.+..+. .|+....+..+...+...|.
T Consensus 119 ~~~~~~~~A~~~~~~al~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~ 194 (272)
T 3u4t_A 119 YNKGNFPLAIQYMEKQIRPTT--TDPKVFYELGQAYYYNKEYVKADSSFVKVLEL--KPNIYIGYLWRARANAAQDPDTK 194 (272)
T ss_dssp HHTTCHHHHHHHHGGGCCSSC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHSTTCS
T ss_pred HHccCHHHHHHHHHHHhhcCC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHcCcchh
Confidence 999999999999999877532 23345665552444556999999999999875 46544667777888888888
Q ss_pred HHHHHHHHHHHhHHHh
Q 047178 232 LEEKERVLEKYKDLFT 247 (287)
Q Consensus 232 leeA~~ll~~m~~l~~ 247 (287)
.++|...+++...+..
T Consensus 195 ~~~A~~~~~~a~~~~~ 210 (272)
T 3u4t_A 195 QGLAKPYYEKLIEVCA 210 (272)
T ss_dssp SCTTHHHHHHHHHHHG
T ss_pred hHHHHHHHHHHHHHHh
Confidence 8889999999888874
No 58
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=97.98 E-value=1.8e-05 Score=77.28 Aligned_cols=112 Identities=13% Similarity=0.014 Sum_probs=74.5
Q ss_pred CHHHHHHHHHHHHHccchhhHHHHHHHHHHCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHH
Q 047178 108 PVGSLKKALLALEKEQQWHRVVQVIKWMLSKGQGSTMGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMI 187 (287)
Q Consensus 108 ~~~s~~~ai~~L~k~~~~~~A~qv~~~M~~~G~~pd~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmI 187 (287)
...++..+-..+...|.|++|..+|..+ ..|..|.++|++.|++++|.+.|.++. +..+|..++
T Consensus 121 n~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA~-------~~~~Wk~v~ 184 (449)
T 1b89_A 121 NNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN-------STRTWKEVC 184 (449)
T ss_dssp ----------------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHHT-------CHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhccHHHHHHHHHHcC-------CchhHHHHH
Confidence 3456777777888888899888888865 368889999999999999999988872 224688899
Q ss_pred HHHHHcCCHhHHHHHHHHHHHCCCCCChHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 047178 188 AIYYRNNMLERLIKLFKGLEAFDRKPPEKSIVQRVADAYEVLGLLEEKERVLEK 241 (287)
Q Consensus 188 sgY~k~G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~G~leeA~~ll~~ 241 (287)
.+|+..|+++.|......+ .+.||. ...++..|.+.|.+++|..+++.
T Consensus 185 ~aCv~~~ef~lA~~~~l~L---~~~ad~---l~~lv~~Yek~G~~eEai~lLe~ 232 (449)
T 1b89_A 185 FACVDGKEFRLAQMCGLHI---VVHADE---LEELINYYQDRGYFEELITMLEA 232 (449)
T ss_dssp HHHHHTTCHHHHHHTTTTT---TTCHHH---HHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHcCcHHHHHHHHHHH---HhCHhh---HHHHHHHHHHCCCHHHHHHHHHH
Confidence 9999999999986655442 256764 34688889999999999777663
No 59
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=97.91 E-value=0.00019 Score=53.94 Aligned_cols=92 Identities=5% Similarity=-0.084 Sum_probs=43.0
Q ss_pred HHHHHHHHccchhhHHHHHHHHHHCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHc
Q 047178 114 KALLALEKEQQWHRVVQVIKWMLSKGQGSTMGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRN 193 (287)
Q Consensus 114 ~ai~~L~k~~~~~~A~qv~~~M~~~G~~pd~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~ 193 (287)
..-..+...+++++|+..++...+.. ..+..+|..+-..|...|+.++|...|++....+- .....|..+-..|.+.
T Consensus 21 ~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~~la~~~~~~ 97 (133)
T 2lni_A 21 NKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEP--TFIKGYTRKAAALEAM 97 (133)
T ss_dssp HHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC--CchHHHHHHHHHHHHH
Confidence 33334445555555555555544321 12334445555555555555555555555444321 1122344444555555
Q ss_pred CCHhHHHHHHHHHHH
Q 047178 194 NMLERLIKLFKGLEA 208 (287)
Q Consensus 194 G~~eeA~~Lf~eM~~ 208 (287)
|++++|.+.|.+...
T Consensus 98 ~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 98 KDYTKAMDVYQKALD 112 (133)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHH
Confidence 555555555555443
No 60
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=97.91 E-value=0.00045 Score=70.81 Aligned_cols=163 Identities=11% Similarity=0.096 Sum_probs=124.3
Q ss_pred HHHHHHHccCCCcchHHHHHHHHHHccCCCCHHHHHHHHHHHHHccchhhHHHHHHHHHHCCCCC-ChhHHHHHHHHHHH
Q 047178 78 FLVNTLLDLKNSKEDVYGTLDAWVAWEQNFPVGSLKKALLALEKEQQWHRVVQVIKWMLSKGQGS-TMGTCGQLIRALDM 156 (287)
Q Consensus 78 ~Li~~l~~lg~~~~~v~~~Ld~~~~~~~~~~~~s~~~ai~~L~k~~~~~~A~qv~~~M~~~G~~p-d~~TYnaLI~~y~K 156 (287)
.|-..+...|+.++++ ..+.+..+..-.+ ...+..+-..|.+.|++++|++.|+..++. .| +..+|+-|=..|.+
T Consensus 14 nLG~~~~~~G~~~eAi-~~~~kAl~l~P~~-~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nLg~~l~~ 89 (723)
T 4gyw_A 14 NLANIKREQGNIEEAV-RLYRKALEVFPEF-AAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGNTLKE 89 (723)
T ss_dssp HHHHHHHHTTCHHHHH-HHHHHHHHHCSCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHH-HHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHH
Confidence 3555667778766553 2233332221111 344555666788999999999999998774 34 46789999999999
Q ss_pred cCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChHHHHHHHHHHHHhcCCHHHHH
Q 047178 157 DHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNNMLERLIKLFKGLEAFDRKPPEKSIVQRVADAYEVLGLLEEKE 236 (287)
Q Consensus 157 ~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~G~leeA~ 236 (287)
.|+.++|.+.|++..+.+- -....|+.+=..|.+.|++++|++.|++..+. .||....|..+...|...|++++|.
T Consensus 90 ~g~~~~A~~~~~kAl~l~P--~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l--~P~~~~a~~~L~~~l~~~g~~~~A~ 165 (723)
T 4gyw_A 90 MQDVQGALQCYTRAIQINP--AFADAHSNLASIHKDSGNIPEAIASYRTALKL--KPDFPDAYCNLAHCLQIVCDWTDYD 165 (723)
T ss_dssp TTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCCTTHH
T ss_pred cCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHhhhhhHHHhcccHHHHH
Confidence 9999999999999877541 22357899999999999999999999998764 5776678899999999999999999
Q ss_pred HHHHHHhHHHhh
Q 047178 237 RVLEKYKDLFTE 248 (287)
Q Consensus 237 ~ll~~m~~l~~~ 248 (287)
+.+++...+...
T Consensus 166 ~~~~kal~l~~~ 177 (723)
T 4gyw_A 166 ERMKKLVSIVAD 177 (723)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHhChh
Confidence 988877766543
No 61
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=97.90 E-value=0.00038 Score=51.60 Aligned_cols=113 Identities=13% Similarity=-0.040 Sum_probs=82.1
Q ss_pred HHHHHHHHccchhhHHHHHHHHHHCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHc
Q 047178 114 KALLALEKEQQWHRVVQVIKWMLSKGQGSTMGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRN 193 (287)
Q Consensus 114 ~ai~~L~k~~~~~~A~qv~~~M~~~G~~pd~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~ 193 (287)
..-..+...+++++|++.+....+.. ..+..+|..+-..|...|+.++|...|++....+. .....|..+-..|.+.
T Consensus 17 ~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 93 (131)
T 2vyi_A 17 TEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDP--AYSKAYGRMGLALSSL 93 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCc--cCHHHHHHHHHHHHHh
Confidence 34445667888889988888877642 23567788888888999999999999988876532 2234677788889999
Q ss_pred CCHhHHHHHHHHHHHCCCCCChHHHHHHHHHHHHhcCC
Q 047178 194 NMLERLIKLFKGLEAFDRKPPEKSIVQRVADAYEVLGL 231 (287)
Q Consensus 194 G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~G~ 231 (287)
|++++|...|.+..... |+....+..+...+...|+
T Consensus 94 ~~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 94 NKHVEAVAYYKKALELD--PDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp TCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHHhc
Confidence 99999999998887653 4333556666666666664
No 62
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=97.85 E-value=0.0004 Score=66.56 Aligned_cols=128 Identities=7% Similarity=-0.037 Sum_probs=100.9
Q ss_pred HHHHHHHHHHHHccchhhHHHHHHHHHHCCCCCChhHHHHHHHHHHHc---------CCHHHHHHHHHHhhhCCCCCCCh
Q 047178 110 GSLKKALLALEKEQQWHRVVQVIKWMLSKGQGSTMGTCGQLIRALDMD---------HRAEEAHKFWEKRIGIDLHSVPW 180 (287)
Q Consensus 110 ~s~~~ai~~L~k~~~~~~A~qv~~~M~~~G~~pd~~TYnaLI~~y~K~---------G~leeA~~lF~eM~~~g~~sv~~ 180 (287)
..+..+-..+.+.|++++|++.|...++. .|+..+|..|-..|... |++++|.+.|++....+- ...
T Consensus 138 ~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p--~~~ 213 (474)
T 4abn_A 138 EAWNQLGEVYWKKGDVTSAHTCFSGALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDV--LDG 213 (474)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCT--TCH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCC--CCH
Confidence 34555556677889999999999888764 47777888888888888 999999999999877542 233
Q ss_pred hhHHHHHHHHHHc--------CCHhHHHHHHHHHHHCCCCC---ChHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 047178 181 QLCKSMIAIYYRN--------NMLERLIKLFKGLEAFDRKP---PEKSIVQRVADAYEVLGLLEEKERVLEKYK 243 (287)
Q Consensus 181 ~tyNsmIsgY~k~--------G~~eeA~~Lf~eM~~~Gi~P---D~~~Ty~sLI~a~~k~G~leeA~~ll~~m~ 243 (287)
..|..+-.+|... |++++|++.|++..+. .| +....|..+-..|...|++++|...+++..
T Consensus 214 ~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 285 (474)
T 4abn_A 214 RSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKV--DRKASSNPDLHLNRATLHKYEESYGEALEGFSQAA 285 (474)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH--CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5688888888888 8899999999988874 35 445778888889999999999998887543
No 63
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=97.83 E-value=0.0004 Score=51.51 Aligned_cols=99 Identities=14% Similarity=0.014 Sum_probs=82.0
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChHHHHHHH
Q 047178 143 TMGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNNMLERLIKLFKGLEAFDRKPPEKSIVQRV 222 (287)
Q Consensus 143 d~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sL 222 (287)
+...|..+-..+...|++++|...|++.....- .....|..+-..|...|++++|.+.|...... .|+....+..+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~ 86 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNP--ANAVYFCNRAAAYSKLGNYAGAVQDCERAICI--DPAYSKAYGRM 86 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHhhchHHHHHHHHHHHhc--CccCHHHHHHH
Confidence 445678888899999999999999999876542 23456888899999999999999999998875 35545667888
Q ss_pred HHHHHhcCCHHHHHHHHHHHhHH
Q 047178 223 ADAYEVLGLLEEKERVLEKYKDL 245 (287)
Q Consensus 223 I~a~~k~G~leeA~~ll~~m~~l 245 (287)
...|...|++++|...+++...+
T Consensus 87 ~~~~~~~~~~~~A~~~~~~~~~~ 109 (131)
T 2vyi_A 87 GLALSSLNKHVEAVAYYKKALEL 109 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHhc
Confidence 88999999999999999887665
No 64
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=97.82 E-value=0.00049 Score=70.54 Aligned_cols=128 Identities=12% Similarity=0.054 Sum_probs=106.2
Q ss_pred HHHHHHHHHHccchhhHHHHHHHHHHCCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHH
Q 047178 112 LKKALLALEKEQQWHRVVQVIKWMLSKGQGS-TMGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIY 190 (287)
Q Consensus 112 ~~~ai~~L~k~~~~~~A~qv~~~M~~~G~~p-d~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY 190 (287)
+..+=..+.+.|++++|++.|+..++. .| +..+|+.|=..|.+.|+.++|.+.|++..+.+- -....|+.|=..|
T Consensus 12 l~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P--~~~~a~~nLg~~l 87 (723)
T 4gyw_A 12 LNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP--TFADAYSNMGNTL 87 (723)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHH
Confidence 344445678899999999999998774 34 467899999999999999999999999887541 2235788899999
Q ss_pred HHcCCHhHHHHHHHHHHHCCCCCChHHHHHHHHHHHHhcCCHHHHHHHHHHHhHH
Q 047178 191 YRNNMLERLIKLFKGLEAFDRKPPEKSIVQRVADAYEVLGLLEEKERVLEKYKDL 245 (287)
Q Consensus 191 ~k~G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~G~leeA~~ll~~m~~l 245 (287)
.+.|++++|++.|++-.+. .|+....|+.+-..|...|++++|...+++...+
T Consensus 88 ~~~g~~~~A~~~~~kAl~l--~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l 140 (723)
T 4gyw_A 88 KEMQDVQGALQCYTRAIQI--NPAFADAHSNLASIHKDSGNIPEAIASYRTALKL 140 (723)
T ss_dssp HHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999999999999998764 5776678999999999999999999999875544
No 65
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=97.81 E-value=0.00067 Score=63.11 Aligned_cols=132 Identities=7% Similarity=-0.033 Sum_probs=96.2
Q ss_pred HHHHHHHHHHHHHccchhhHHHHHHHHHHCCC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCC-----Chhh
Q 047178 109 VGSLKKALLALEKEQQWHRVVQVIKWMLSKGQ-GSTMGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSV-----PWQL 182 (287)
Q Consensus 109 ~~s~~~ai~~L~k~~~~~~A~qv~~~M~~~G~-~pd~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv-----~~~t 182 (287)
...+..+-..+...|+.++|++++..-+..|- .-+...+-.++..|.+.|+.+.|.++|++|...+ + ...+
T Consensus 100 ~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~---~d~~~~~d~~ 176 (310)
T 3mv2_B 100 PYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAI---EDTVSGDNEM 176 (310)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---ccccccchHH
Confidence 33444455667888999999999988655543 2356678889999999999999999999997653 2 1223
Q ss_pred HHHHHHH--HHH--cCCHhHHHHHHHHHHHCCCCCChHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHH
Q 047178 183 CKSMIAI--YYR--NNMLERLIKLFKGLEAFDRKPPEKSIVQRVADAYEVLGLLEEKERVLEKYKDLF 246 (287)
Q Consensus 183 yNsmIsg--Y~k--~G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~G~leeA~~ll~~m~~l~ 246 (287)
..-|..+ ... .+.+.+|+.+|+++.+. .|+. .+...++.++...|++++|+.+++.+..++
T Consensus 177 l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~-~~~~lLln~~~~~g~~~eAe~~L~~l~~~~ 241 (310)
T 3mv2_B 177 ILNLAESYIKFATNKETATSNFYYYEELSQT--FPTW-KTQLGLLNLHLQQRNIAEAQGIVELLLSDY 241 (310)
T ss_dssp HHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSH-HHHHHHHHHHHHHTCHHHHHHHHHHHHSHH
T ss_pred HHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCc-ccHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 3344444 222 34999999999998765 3652 334566668999999999999998766654
No 66
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=97.80 E-value=2.4e-05 Score=76.42 Aligned_cols=101 Identities=9% Similarity=-0.000 Sum_probs=54.9
Q ss_pred HHHHHHHHccchhhHHHHHHHHHHCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHc
Q 047178 114 KALLALEKEQQWHRVVQVIKWMLSKGQGSTMGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRN 193 (287)
Q Consensus 114 ~ai~~L~k~~~~~~A~qv~~~M~~~G~~pd~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~ 193 (287)
.++..+.+.|++.++.++++ .|+..+|+.+-+.|...|++++|..+|.++. .|+.|.++|++.
T Consensus 99 ~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a~----------n~~~LA~~L~~L 161 (449)
T 1b89_A 99 ELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS----------NFGRLASTLVHL 161 (449)
T ss_dssp ----------CHHHHTTTTT-------CC----------------CTTTHHHHHHHTT----------CHHHHHHHHHTT
T ss_pred HHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHhh----------hHHHHHHHHHHh
Confidence 45556666777776665553 2566677777777777777777777777651 278888888888
Q ss_pred CCHhHHHHHHHHHHHCCCCCChHHHHHHHHHHHHhcCCHHHHHHH
Q 047178 194 NMLERLIKLFKGLEAFDRKPPEKSIVQRVADAYEVLGLLEEKERV 238 (287)
Q Consensus 194 G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~G~leeA~~l 238 (287)
|++++|++.+..+ -+ +.||..++.+|...|+++.|...
T Consensus 162 g~yq~AVea~~KA------~~-~~~Wk~v~~aCv~~~ef~lA~~~ 199 (449)
T 1b89_A 162 GEYQAAVDGARKA------NS-TRTWKEVCFACVDGKEFRLAQMC 199 (449)
T ss_dssp TCHHHHHHHHHHH------TC-HHHHHHHHHHHHHTTCHHHHHHT
T ss_pred ccHHHHHHHHHHc------CC-chhHHHHHHHHHHcCcHHHHHHH
Confidence 8888888888877 13 46788888888888888888643
No 67
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=97.79 E-value=0.00039 Score=50.72 Aligned_cols=90 Identities=8% Similarity=-0.184 Sum_probs=46.2
Q ss_pred HHHHHHccchhhHHHHHHHHHHCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHcCC
Q 047178 116 LLALEKEQQWHRVVQVIKWMLSKGQGSTMGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNNM 195 (287)
Q Consensus 116 i~~L~k~~~~~~A~qv~~~M~~~G~~pd~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~G~ 195 (287)
...+...|++++|++.+....+.. ..+...|..+-..|.+.|+.++|...|++....+- .....|..+-..|.+.|+
T Consensus 11 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~a~~~~~~~~ 87 (118)
T 1elw_A 11 GNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP--DWGKGYSRKAAALEFLNR 87 (118)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCc--ccHHHHHHHHHHHHHHhh
Confidence 334445555666665555554431 12344455555555556666666666655544321 112234555555556666
Q ss_pred HhHHHHHHHHHHH
Q 047178 196 LERLIKLFKGLEA 208 (287)
Q Consensus 196 ~eeA~~Lf~eM~~ 208 (287)
+++|.+.|.+..+
T Consensus 88 ~~~A~~~~~~~~~ 100 (118)
T 1elw_A 88 FEEAKRTYEEGLK 100 (118)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHH
Confidence 6666666655543
No 68
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.78 E-value=0.00066 Score=51.84 Aligned_cols=100 Identities=10% Similarity=-0.003 Sum_probs=65.3
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChHHHHHHH
Q 047178 143 TMGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNNMLERLIKLFKGLEAFDRKPPEKSIVQRV 222 (287)
Q Consensus 143 d~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sL 222 (287)
+...|..+-..|.+.|++++|...|.+....+- .....|..+-..|.+.|++++|+..|....... |+....+..+
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l 83 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNP--LVAVYYTNRALCYLKMQQPEQALADCRRALELD--GQSVKAHFFL 83 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCc--CcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--chhHHHHHHH
Confidence 455666666777777777777777777665431 122456667777777777777777777766543 4434556666
Q ss_pred HHHHHhcCCHHHHHHHHHHHhHHH
Q 047178 223 ADAYEVLGLLEEKERVLEKYKDLF 246 (287)
Q Consensus 223 I~a~~k~G~leeA~~ll~~m~~l~ 246 (287)
-..|...|++++|...+.+...+.
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~~~ 107 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYSLA 107 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHC
Confidence 667777777777777776655554
No 69
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.78 E-value=0.00027 Score=51.26 Aligned_cols=97 Identities=15% Similarity=-0.009 Sum_probs=69.3
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCC--hHHHHHH
Q 047178 144 MGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNNMLERLIKLFKGLEAFDRKPP--EKSIVQR 221 (287)
Q Consensus 144 ~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~G~~eeA~~Lf~eM~~~Gi~PD--~~~Ty~s 221 (287)
...|..+-..|.+.|+.++|...|++....+- .....|..+-..|.+.|++++|.+.|++..+.. |+ ....+..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~ 81 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDP--EESKYWLMKGKALYNLERYEEAVDCYNYVINVI--EDEYNKDVWAA 81 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--CCTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCc--CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--cccchHHHHHH
Confidence 44566677777788888888888888766432 223456777778888888888888888877653 43 3455677
Q ss_pred HHHHHHhc-CCHHHHHHHHHHHhH
Q 047178 222 VADAYEVL-GLLEEKERVLEKYKD 244 (287)
Q Consensus 222 LI~a~~k~-G~leeA~~ll~~m~~ 244 (287)
+...|... |++++|.+.+.+...
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 82 KADALRYIEGKEVEAEIAEARAKL 105 (112)
T ss_dssp HHHHHTTCSSCSHHHHHHHHHHGG
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhh
Confidence 77778888 888888888776543
No 70
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=97.77 E-value=0.00031 Score=57.70 Aligned_cols=98 Identities=14% Similarity=0.040 Sum_probs=67.6
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChHHHHHHHHH
Q 047178 145 GTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNNMLERLIKLFKGLEAFDRKPPEKSIVQRVAD 224 (287)
Q Consensus 145 ~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~ 224 (287)
..+..+=..|.+.|++++|...|++....+- .....|..+=.+|.+.|++++|++.|++.... .|+....|..+-.
T Consensus 37 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P--~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l--~P~~~~~~~~lg~ 112 (151)
T 3gyz_A 37 DDIYSYAYDFYNKGRIEEAEVFFRFLCIYDF--YNVDYIMGLAAIYQIKEQFQQAADLYAVAFAL--GKNDYTPVFHTGQ 112 (151)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SSSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHccHHHHHHHHHHHHhh--CCCCcHHHHHHHH
Confidence 3455566667778888888888887776541 22345777777777888888888888777664 3544455666777
Q ss_pred HHHhcCCHHHHHHHHHHHhHHH
Q 047178 225 AYEVLGLLEEKERVLEKYKDLF 246 (287)
Q Consensus 225 a~~k~G~leeA~~ll~~m~~l~ 246 (287)
+|...|++++|...|++...+.
T Consensus 113 ~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 113 CQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHcCCHHHHHHHHHHHHHhC
Confidence 7788888888888777766554
No 71
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=97.76 E-value=0.00088 Score=50.15 Aligned_cols=101 Identities=16% Similarity=-0.002 Sum_probs=83.5
Q ss_pred CChhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChHHHHHH
Q 047178 142 STMGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNNMLERLIKLFKGLEAFDRKPPEKSIVQR 221 (287)
Q Consensus 142 pd~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~s 221 (287)
.+...|..+-..|.+.|++++|...|++....+- .....|..+-..|.+.|++++|++.|++.... .|+....+..
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~ 89 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNP--KDAKLYSNRAACYTKLLEFQLALKDCEECIQL--EPTFIKGYTR 89 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCT--TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHH--CTTCHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CcHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCchHHHHH
Confidence 3556788899999999999999999999887542 23456888889999999999999999998875 3544567788
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhHHH
Q 047178 222 VADAYEVLGLLEEKERVLEKYKDLF 246 (287)
Q Consensus 222 LI~a~~k~G~leeA~~ll~~m~~l~ 246 (287)
+...|...|++++|...+++...+.
T Consensus 90 la~~~~~~~~~~~A~~~~~~~~~~~ 114 (133)
T 2lni_A 90 KAAALEAMKDYTKAMDVYQKALDLD 114 (133)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhC
Confidence 8889999999999999998876654
No 72
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=97.74 E-value=0.00045 Score=54.42 Aligned_cols=92 Identities=15% Similarity=0.053 Sum_probs=44.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChHHHHHHHHHHHHhc
Q 047178 150 LIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNNMLERLIKLFKGLEAFDRKPPEKSIVQRVADAYEVL 229 (287)
Q Consensus 150 LI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~ 229 (287)
+-..|.+.|++++|...|++....+- .+...|..+=.+|.+.|++++|+..|+...... |+....+..+-.+|...
T Consensus 24 ~a~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~ 99 (142)
T 2xcb_A 24 LGFNQYQAGKWDDAQKIFQALCMLDH--YDARYFLGLGACRQSLGLYEQALQSYSYGALMD--INEPRFPFHAAECHLQL 99 (142)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTHHHHHHHHHHHHT
T ss_pred HHHHHHHHccHHHHHHHHHHHHHhCC--ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--CCCcHHHHHHHHHHHHc
Confidence 33444555555555555555544321 122334444455555555555555555554432 33223344444555555
Q ss_pred CCHHHHHHHHHHHhHH
Q 047178 230 GLLEEKERVLEKYKDL 245 (287)
Q Consensus 230 G~leeA~~ll~~m~~l 245 (287)
|++++|...+++...+
T Consensus 100 g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 100 GDLDGAESGFYSARAL 115 (142)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh
Confidence 5555555555544443
No 73
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=97.74 E-value=0.00037 Score=56.27 Aligned_cols=95 Identities=7% Similarity=0.036 Sum_probs=52.6
Q ss_pred HHHHHHHHHHccchhhHHHHHHHHHHCCCCCChhHHHHHHHH-HHHcCCH--HHHHHHHHHhhhCCCCCCChhhHHHHHH
Q 047178 112 LKKALLALEKEQQWHRVVQVIKWMLSKGQGSTMGTCGQLIRA-LDMDHRA--EEAHKFWEKRIGIDLHSVPWQLCKSMIA 188 (287)
Q Consensus 112 ~~~ai~~L~k~~~~~~A~qv~~~M~~~G~~pd~~TYnaLI~~-y~K~G~l--eeA~~lF~eM~~~g~~sv~~~tyNsmIs 188 (287)
+..+-..+...|++++|+..+....+.. ..+...|..+-.. |...|+. ++|...|++....+- .....|..+-.
T Consensus 47 ~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~la~ 123 (177)
T 2e2e_A 47 WALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQTRAMIDKALALDS--NEITALMLLAS 123 (177)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCT--TCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCC--CcHHHHHHHHH
Confidence 3344444556666666666666655432 1234445555555 5566665 666666666655431 12234555566
Q ss_pred HHHHcCCHhHHHHHHHHHHHC
Q 047178 189 IYYRNNMLERLIKLFKGLEAF 209 (287)
Q Consensus 189 gY~k~G~~eeA~~Lf~eM~~~ 209 (287)
.|.+.|++++|...|.+....
T Consensus 124 ~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 124 DAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHcccHHHHHHHHHHHHhh
Confidence 666666666666666666554
No 74
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=97.73 E-value=0.0013 Score=58.04 Aligned_cols=135 Identities=16% Similarity=0.110 Sum_probs=101.2
Q ss_pred HHHHHHHHHHccchhhHHHHHHHHHHCC-CCCCh----hHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCCh----hh
Q 047178 112 LKKALLALEKEQQWHRVVQVIKWMLSKG-QGSTM----GTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPW----QL 182 (287)
Q Consensus 112 ~~~ai~~L~k~~~~~~A~qv~~~M~~~G-~~pd~----~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~----~t 182 (287)
+...+..+...+++++|.++++...+.- ..|+. ..|..+...|...|+.++|...|++.........++ .+
T Consensus 78 l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 3u3w_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHH
Confidence 4445677888999999999999887632 12331 234556677778889999999999987643221222 25
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHH----C-CCCCChHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHH
Q 047178 183 CKSMIAIYYRNNMLERLIKLFKGLEA----F-DRKPPEKSIVQRVADAYEVLGLLEEKERVLEKYKDLF 246 (287)
Q Consensus 183 yNsmIsgY~k~G~~eeA~~Lf~eM~~----~-Gi~PD~~~Ty~sLI~a~~k~G~leeA~~ll~~m~~l~ 246 (287)
|+.|-..|...|++++|+..|.+... . +..|....+|..+...|.+.|++++|...+++...+.
T Consensus 158 ~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~ 226 (293)
T 3u3w_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEIS 226 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999873 2 3444444477888889999999999999998776654
No 75
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=97.72 E-value=0.00054 Score=54.95 Aligned_cols=91 Identities=9% Similarity=-0.073 Sum_probs=51.6
Q ss_pred HHHHHHHccchhhHHHHHHHHHHCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHcC
Q 047178 115 ALLALEKEQQWHRVVQVIKWMLSKGQGSTMGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNN 194 (287)
Q Consensus 115 ai~~L~k~~~~~~A~qv~~~M~~~G~~pd~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~G 194 (287)
.-..+.+.|++++|++.|...++.. ..+...|..+-..|.+.|++++|...|++....+- .....|..+-..|.+.|
T Consensus 17 ~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~lg~~~~~~g 93 (164)
T 3sz7_A 17 EGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDP--KYSKAWSRLGLARFDMA 93 (164)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcc
Confidence 3344555666666666666655432 12445566666666666666666666666655431 12234555666666666
Q ss_pred CHhHHHHHHHHHHH
Q 047178 195 MLERLIKLFKGLEA 208 (287)
Q Consensus 195 ~~eeA~~Lf~eM~~ 208 (287)
++++|.+.|.+..+
T Consensus 94 ~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 94 DYKGAKEAYEKGIE 107 (164)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 66666666666554
No 76
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=97.70 E-value=0.0016 Score=62.45 Aligned_cols=127 Identities=10% Similarity=-0.004 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHccchhhHHHHHHHHHHCCCCCCh--hHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhH--HHH
Q 047178 111 SLKKALLALEKEQQWHRVVQVIKWMLSKGQGSTM--GTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLC--KSM 186 (287)
Q Consensus 111 s~~~ai~~L~k~~~~~~A~qv~~~M~~~G~~pd~--~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~ty--Nsm 186 (287)
-+......+.+.|++++|.++++..++. .|+. .+|..+...+.+.|++++|.++|++-....- .....| ..+
T Consensus 323 l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~--~~~~~~~~~a~ 398 (530)
T 2ooe_A 323 LYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR--TRHHVYVTAAL 398 (530)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTT--CCTHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccC--CchHHHHHHHH
Confidence 3445566677889999999999998874 4542 4788888889999999999999998876431 111112 222
Q ss_pred HHHHHHcCCHhHHHHHHHHHHHCCCCCChHHHHHHHHHHHHhcCCHHHHHHHHHHHhH
Q 047178 187 IAIYYRNNMLERLIKLFKGLEAFDRKPPEKSIVQRVADAYEVLGLLEEKERVLEKYKD 244 (287)
Q Consensus 187 IsgY~k~G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~G~leeA~~ll~~m~~ 244 (287)
+ .|...|++++|..+|+...+. .|+....+..+++.+.+.|+.++|..+|++...
T Consensus 399 ~-~~~~~~~~~~A~~~~e~al~~--~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~ 453 (530)
T 2ooe_A 399 M-EYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLT 453 (530)
T ss_dssp H-HHHHTCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHH
T ss_pred H-HHHHcCChhHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHh
Confidence 2 244688999999999877654 365456678888888888999999988887654
No 77
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=97.69 E-value=0.00055 Score=55.08 Aligned_cols=98 Identities=15% Similarity=0.029 Sum_probs=59.3
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChHHHHHHHHH
Q 047178 145 GTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNNMLERLIKLFKGLEAFDRKPPEKSIVQRVAD 224 (287)
Q Consensus 145 ~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~ 224 (287)
..+..+-..|.+.|+.++|...|++....+- .....|..+=.+|.+.|++++|+..|++.... .|+....+..+-.
T Consensus 22 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~lg~ 97 (148)
T 2vgx_A 22 EQLYSLAFNQYQSGXYEDAHXVFQALCVLDH--YDSRFFLGLGACRQAMGQYDLAIHSYSYGAVM--DIXEPRFPFHAAE 97 (148)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCc--ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCCchHHHHHHH
Confidence 3455555666677777777777776655431 12234555666666777777777777766553 2433344555666
Q ss_pred HHHhcCCHHHHHHHHHHHhHHH
Q 047178 225 AYEVLGLLEEKERVLEKYKDLF 246 (287)
Q Consensus 225 a~~k~G~leeA~~ll~~m~~l~ 246 (287)
+|...|++++|...+++...+.
T Consensus 98 ~~~~~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 98 CLLQXGELAEAESGLFLAQELI 119 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHC
Confidence 6777777777777766655543
No 78
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=97.69 E-value=0.00055 Score=53.68 Aligned_cols=87 Identities=7% Similarity=-0.075 Sum_probs=44.5
Q ss_pred HHHccchhhHHHHHHHHHHCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHcCCHhH
Q 047178 119 LEKEQQWHRVVQVIKWMLSKGQGSTMGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNNMLER 198 (287)
Q Consensus 119 L~k~~~~~~A~qv~~~M~~~G~~pd~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~G~~ee 198 (287)
+.+.|++++|++.|...++.. +.+..+|.-+-.+|.+.|+.++|...|++..+.+- .....|..+-.+|...|++++
T Consensus 23 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p--~~~~a~~~lg~~~~~~~~~~~ 99 (126)
T 4gco_A 23 YFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDS--KFIKGYIRKAACLVAMREWSK 99 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhh--hhhHHHHHHHHHHHHCCCHHH
Confidence 445555555555555554431 12344555555555555555555555555544321 112345555555555555555
Q ss_pred HHHHHHHHHH
Q 047178 199 LIKLFKGLEA 208 (287)
Q Consensus 199 A~~Lf~eM~~ 208 (287)
|++.|++..+
T Consensus 100 A~~~~~~al~ 109 (126)
T 4gco_A 100 AQRAYEDALQ 109 (126)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555555444
No 79
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.68 E-value=0.00063 Score=51.98 Aligned_cols=134 Identities=17% Similarity=0.088 Sum_probs=95.6
Q ss_pred HHHHHHHccchhhHHHHHHHHHHCCCC-CC----hhHHHHHHHHHHHcCCHHHHHHHHHHhhhCC--CCCCC--hhhHHH
Q 047178 115 ALLALEKEQQWHRVVQVIKWMLSKGQG-ST----MGTCGQLIRALDMDHRAEEAHKFWEKRIGID--LHSVP--WQLCKS 185 (287)
Q Consensus 115 ai~~L~k~~~~~~A~qv~~~M~~~G~~-pd----~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g--~~sv~--~~tyNs 185 (287)
+-..+...|++++|+..+....+..-. ++ ..+|..+-..|...|+.++|...|++..... ...++ ...|..
T Consensus 15 l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 94 (164)
T 3ro3_A 15 LGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYS 94 (164)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHH
Confidence 333456677888888877766542110 11 2478888899999999999999999875421 10011 135778
Q ss_pred HHHHHHHcCCHhHHHHHHHHHHH----CCCCCChHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHHhh
Q 047178 186 MIAIYYRNNMLERLIKLFKGLEA----FDRKPPEKSIVQRVADAYEVLGLLEEKERVLEKYKDLFTE 248 (287)
Q Consensus 186 mIsgY~k~G~~eeA~~Lf~eM~~----~Gi~PD~~~Ty~sLI~a~~k~G~leeA~~ll~~m~~l~~~ 248 (287)
+-..|...|++++|.+.|.+... .+-.+....++..+-..|...|++++|...+++...+...
T Consensus 95 l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 161 (164)
T 3ro3_A 95 LGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 161 (164)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 88899999999999999988754 3333333355777888899999999999999988777643
No 80
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.67 E-value=0.00046 Score=51.30 Aligned_cols=99 Identities=12% Similarity=0.087 Sum_probs=64.2
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHcCCHhHHHHHHHHHHHCCC--CCCh---HHHH
Q 047178 145 GTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNNMLERLIKLFKGLEAFDR--KPPE---KSIV 219 (287)
Q Consensus 145 ~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~G~~eeA~~Lf~eM~~~Gi--~PD~---~~Ty 219 (287)
.+|..+-..|...|++++|...|++....+- .....|..+-..|.+.|++++|...|.+.....- .++. ..++
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDP--TNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC--ccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 3456666677777788888887777765431 2234566677777777888888877777765421 1110 2445
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhHH
Q 047178 220 QRVADAYEVLGLLEEKERVLEKYKDL 245 (287)
Q Consensus 220 ~sLI~a~~k~G~leeA~~ll~~m~~l 245 (287)
..+...|...|++++|...+++...+
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 66667777788888888777765553
No 81
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=97.67 E-value=0.00017 Score=65.33 Aligned_cols=139 Identities=12% Similarity=0.038 Sum_probs=103.6
Q ss_pred HHHHHHHHHHccchhhHHHHHHHHHHCCCC-CC----hhHHHHHHHHHHHcCCHHHHHHHHHHhhhCC--CCCCC--hhh
Q 047178 112 LKKALLALEKEQQWHRVVQVIKWMLSKGQG-ST----MGTCGQLIRALDMDHRAEEAHKFWEKRIGID--LHSVP--WQL 182 (287)
Q Consensus 112 ~~~ai~~L~k~~~~~~A~qv~~~M~~~G~~-pd----~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g--~~sv~--~~t 182 (287)
+..+-..+...|++++|++.+....+..-. .+ ..+|..+-..|...|+.++|...|++..... ..... ..+
T Consensus 226 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 305 (411)
T 4a1s_A 226 CGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQS 305 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 334455678889999999998887642110 11 2378889999999999999999999876421 10011 246
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHHC----CCCCChHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHHhhhh
Q 047178 183 CKSMIAIYYRNNMLERLIKLFKGLEAF----DRKPPEKSIVQRVADAYEVLGLLEEKERVLEKYKDLFTEKE 250 (287)
Q Consensus 183 yNsmIsgY~k~G~~eeA~~Lf~eM~~~----Gi~PD~~~Ty~sLI~a~~k~G~leeA~~ll~~m~~l~~~~~ 250 (287)
|..+-..|.+.|++++|.+.|++.... +-.++...+|..+...|...|+.++|...+++...++....
T Consensus 306 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 377 (411)
T 4a1s_A 306 CYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXXXX 377 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcc
Confidence 888999999999999999999987643 22333334677888899999999999999999888887665
No 82
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=97.67 E-value=0.0049 Score=51.47 Aligned_cols=117 Identities=6% Similarity=-0.067 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHccchhhHHHHHHHHHHCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCCh-------hhH
Q 047178 111 SLKKALLALEKEQQWHRVVQVIKWMLSKGQGSTMGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPW-------QLC 183 (287)
Q Consensus 111 s~~~ai~~L~k~~~~~~A~qv~~~M~~~G~~pd~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~-------~ty 183 (287)
.+..+-..+...|++++|++.+....+.. +.+..+|..+-..|.+.|+.++|...|++.....- .+. ..|
T Consensus 44 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~~~~~~ 120 (228)
T 4i17_A 44 TAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVP--GNATIEKLYAIYY 120 (228)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST--TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC--CcHHHHHHHHHHH
Confidence 33335556778999999999999887643 22556788999999999999999999999887542 122 236
Q ss_pred HHHHHHHHHcCCHhHHHHHHHHHHHCCCCCC--hHHHHHHHHHHHHhcCCH
Q 047178 184 KSMIAIYYRNNMLERLIKLFKGLEAFDRKPP--EKSIVQRVADAYEVLGLL 232 (287)
Q Consensus 184 NsmIsgY~k~G~~eeA~~Lf~eM~~~Gi~PD--~~~Ty~sLI~a~~k~G~l 232 (287)
..+=..|.+.|++++|++.|.+..+. .|+ ....|..+-..|...|..
T Consensus 121 ~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~~~~~~~~~~ 169 (228)
T 4i17_A 121 LKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLGVLFYNNGAD 169 (228)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHHHHHHHHHHH
Confidence 66777888999999999999998764 677 446677777777777766
No 83
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.66 E-value=0.0011 Score=50.63 Aligned_cols=93 Identities=15% Similarity=0.056 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCC---hhhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChHHHHHHH
Q 047178 146 TCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVP---WQLCKSMIAIYYRNNMLERLIKLFKGLEAFDRKPPEKSIVQRV 222 (287)
Q Consensus 146 TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~---~~tyNsmIsgY~k~G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sL 222 (287)
.+..+-..|.+.|++++|..+|++....+- .+ ...|..+-..|.+.|++++|+..|.+.... .|+....+..+
T Consensus 30 ~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~ 105 (148)
T 2dba_A 30 QLRKEGNELFKCGDYGGALAAYTQALGLDA--TPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK--DGGDVKALYRR 105 (148)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TSCCHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHcc--cchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh--CccCHHHHHHH
Confidence 344444444444455555554444443221 11 123444444444455555555554444432 22222333444
Q ss_pred HHHHHhcCCHHHHHHHHHHH
Q 047178 223 ADAYEVLGLLEEKERVLEKY 242 (287)
Q Consensus 223 I~a~~k~G~leeA~~ll~~m 242 (287)
..+|...|++++|...+++.
T Consensus 106 a~~~~~~~~~~~A~~~~~~a 125 (148)
T 2dba_A 106 SQALEKLGRLDQAVLDLQRC 125 (148)
T ss_dssp HHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHH
Confidence 44444455555555444443
No 84
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=97.65 E-value=0.001 Score=50.69 Aligned_cols=96 Identities=10% Similarity=-0.133 Sum_probs=55.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChHHHHHHHHHHH
Q 047178 147 CGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNNMLERLIKLFKGLEAFDRKPPEKSIVQRVADAY 226 (287)
Q Consensus 147 YnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~ 226 (287)
|..+=..|.+.|+.++|...|++....+- .....|..+-.+|.+.|++++|+..|.+.... .|+....|..+-.+|
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 7 ARLEGKEYFTKSDWPNAVKAYTEMIKRAP--EDARGYSNRAAALAKLMSFPEAIADCNKAIEK--DPNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCC--CChHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHH
Confidence 44444555666666666666666554331 12234566666666666666666666666553 244334555566666
Q ss_pred HhcCCHHHHHHHHHHHhHHH
Q 047178 227 EVLGLLEEKERVLEKYKDLF 246 (287)
Q Consensus 227 ~k~G~leeA~~ll~~m~~l~ 246 (287)
...|++++|...+++...+.
T Consensus 83 ~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 83 IAVKEYASALETLDAARTKD 102 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHhC
Confidence 66666666666666655544
No 85
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=97.62 E-value=0.0018 Score=59.12 Aligned_cols=133 Identities=12% Similarity=0.001 Sum_probs=104.2
Q ss_pred HHHHHHHHccchhhHHHHHHHHHHCCCCCC--------------hhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCC
Q 047178 114 KALLALEKEQQWHRVVQVIKWMLSKGQGST--------------MGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVP 179 (287)
Q Consensus 114 ~ai~~L~k~~~~~~A~qv~~~M~~~G~~pd--------------~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~ 179 (287)
..-..+.+.|++++|+..|...++..-... ..+|..|-.+|.+.|+.++|...|++....+- ..
T Consensus 152 ~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p--~~ 229 (336)
T 1p5q_A 152 ERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDS--NN 229 (336)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--Cc
Confidence 344456788999999999998876532211 47899999999999999999999999987542 23
Q ss_pred hhhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChHHHHHHHHHHHHhcCCHHHH-HHHHHHHhHHHhhhh
Q 047178 180 WQLCKSMIAIYYRNNMLERLIKLFKGLEAFDRKPPEKSIVQRVADAYEVLGLLEEK-ERVLEKYKDLFTEKE 250 (287)
Q Consensus 180 ~~tyNsmIsgY~k~G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~G~leeA-~~ll~~m~~l~~~~~ 250 (287)
...|..+-.+|.+.|++++|+..|++..+. .|+....+..+...+...|+.++| ..++..|...+...-
T Consensus 230 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 299 (336)
T 1p5q_A 230 EKGLSRRGEAHLAVNDFELARADFQKVLQL--YPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFERLAEEE 299 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 356888899999999999999999998875 465556788888899999999999 456666665555444
No 86
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=97.62 E-value=0.0022 Score=62.01 Aligned_cols=129 Identities=10% Similarity=-0.082 Sum_probs=101.6
Q ss_pred HHHHHHHHHHccchhhHHHHHHHHHHCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHH
Q 047178 112 LKKALLALEKEQQWHRVVQVIKWMLSKGQGSTMGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYY 191 (287)
Q Consensus 112 ~~~ai~~L~k~~~~~~A~qv~~~M~~~G~~pd~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~ 191 (287)
+..+-..+...|++++|.+.++...+.. ..+..+|..|-..|...|+.++|.+.|++..+.+- .....|..+-..|.
T Consensus 26 ~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~ 102 (568)
T 2vsy_A 26 WLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAP--EHPGIALWLGHALE 102 (568)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHH
Confidence 3344455677889999999998887642 23567888899999999999999999999877542 23356888889999
Q ss_pred HcCCHhHHHHHHHHHHHCCCCCChHHHHHHHHHHHHhc---CCHHHHHHHHHHHhHH
Q 047178 192 RNNMLERLIKLFKGLEAFDRKPPEKSIVQRVADAYEVL---GLLEEKERVLEKYKDL 245 (287)
Q Consensus 192 k~G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~---G~leeA~~ll~~m~~l 245 (287)
+.|++++|.+.|++..+. .|+....+..+...|... |+.++|.+.+++...+
T Consensus 103 ~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 103 DAGQAEAAAAAYTRAHQL--LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 999999999999998775 354456678888899999 9999999988876544
No 87
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=97.53 E-value=0.0011 Score=62.65 Aligned_cols=130 Identities=8% Similarity=0.021 Sum_probs=77.1
Q ss_pred HHHHHHHHHHccc-hhhHHHHHHHHHHCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHH
Q 047178 112 LKKALLALEKEQQ-WHRVVQVIKWMLSKGQGSTMGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIY 190 (287)
Q Consensus 112 ~~~ai~~L~k~~~-~~~A~qv~~~M~~~G~~pd~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY 190 (287)
+...-..|...|+ +++|+..++..++.. ..+...|+-+=..|.+.|++++|...|++....+- -....|+-+-.+|
T Consensus 134 ~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP--~~~~a~~~lg~~~ 210 (382)
T 2h6f_A 134 WHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDA--KNYHAWQHRQWVI 210 (382)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT--TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCc--cCHHHHHHHHHHH
Confidence 3333444556665 777777777666532 12445666666667777777777777777765441 2234566666677
Q ss_pred HHcCCHhHHHHHHHHHHHCCCCCChHHHHHHHHHHHHh-cCCHHHH-----HHHHHHHhHHH
Q 047178 191 YRNNMLERLIKLFKGLEAFDRKPPEKSIVQRVADAYEV-LGLLEEK-----ERVLEKYKDLF 246 (287)
Q Consensus 191 ~k~G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k-~G~leeA-----~~ll~~m~~l~ 246 (287)
.+.|++++|+..|+++.+.. |+....|+.+-.+|.. .|..++| ...+++...+-
T Consensus 211 ~~~g~~~eAl~~~~~al~l~--P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~ 270 (382)
T 2h6f_A 211 QEFKLWDNELQYVDQLLKED--VRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLV 270 (382)
T ss_dssp HHHTCCTTHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHS
T ss_pred HHcCChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHC
Confidence 77777777777777776643 4334556666666666 4444555 24455544443
No 88
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=97.52 E-value=0.002 Score=50.20 Aligned_cols=97 Identities=14% Similarity=0.026 Sum_probs=79.8
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChHHHHHHHHH
Q 047178 145 GTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNNMLERLIKLFKGLEAFDRKPPEKSIVQRVAD 224 (287)
Q Consensus 145 ~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~ 224 (287)
..|..+-..|...|++++|...|++....+- .....|..+-..|.+.|++++|.+.|.+..... |+....+..+..
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~a~ 89 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELNP--SNAIYYGNRSLAYLRTECYGYALGDATRAIELD--KKYIKGYYRRAA 89 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHST--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCC--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cccHHHHHHHHH
Confidence 4567777888999999999999999876542 234568888999999999999999999988753 544567888888
Q ss_pred HHHhcCCHHHHHHHHHHHhHH
Q 047178 225 AYEVLGLLEEKERVLEKYKDL 245 (287)
Q Consensus 225 a~~k~G~leeA~~ll~~m~~l 245 (287)
.|...|++++|...+++...+
T Consensus 90 ~~~~~~~~~~A~~~~~~a~~~ 110 (166)
T 1a17_A 90 SNMALGKFRAALRDYETVVKV 110 (166)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHh
Confidence 999999999999999876654
No 89
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.50 E-value=0.002 Score=47.66 Aligned_cols=97 Identities=9% Similarity=0.032 Sum_probs=76.2
Q ss_pred HHHHHHHHHccchhhHHHHHHHHHHCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCC-CCC----hhhHHHHH
Q 047178 113 KKALLALEKEQQWHRVVQVIKWMLSKGQGSTMGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLH-SVP----WQLCKSMI 187 (287)
Q Consensus 113 ~~ai~~L~k~~~~~~A~qv~~~M~~~G~~pd~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~-sv~----~~tyNsmI 187 (287)
..+-..+...|++++|+..+....+.. ..+..+|..+-..|...|+.++|...|++....+-. ... ..+|..+-
T Consensus 8 ~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la 86 (131)
T 1elr_A 8 KELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG 86 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHH
Confidence 334455678899999999999887753 346678889999999999999999999998654210 011 34677888
Q ss_pred HHHHHcCCHhHHHHHHHHHHHCC
Q 047178 188 AIYYRNNMLERLIKLFKGLEAFD 210 (287)
Q Consensus 188 sgY~k~G~~eeA~~Lf~eM~~~G 210 (287)
..|.+.|++++|.+.|.+.....
T Consensus 87 ~~~~~~~~~~~A~~~~~~~~~~~ 109 (131)
T 1elr_A 87 NSYFKEEKYKDAIHFYNKSLAEH 109 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHhccHHHHHHHHHHHHHhC
Confidence 99999999999999999998754
No 90
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.50 E-value=0.037 Score=47.30 Aligned_cols=112 Identities=11% Similarity=0.095 Sum_probs=54.9
Q ss_pred ccchhhHHHHHHHHHHCCCCCChhHHHHHHHHHHH----cCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHH----c
Q 047178 122 EQQWHRVVQVIKWMLSKGQGSTMGTCGQLIRALDM----DHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYR----N 193 (287)
Q Consensus 122 ~~~~~~A~qv~~~M~~~G~~pd~~TYnaLI~~y~K----~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k----~ 193 (287)
.+++++|++.++...+.| +..++..|=..|.. .|+.++|...|++..+.+ +...+..+=..|.+ .
T Consensus 91 ~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~----~~~a~~~lg~~~~~~~~~~ 163 (273)
T 1ouv_A 91 SQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN----DGDGCTILGSLYDAGRGTP 163 (273)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSC
T ss_pred ccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC----cHHHHHHHHHHHHcCCCCC
Confidence 455555555555554443 34445555555555 555555555555554433 11234444444444 5
Q ss_pred CCHhHHHHHHHHHHHCCCCCChHHHHHHHHHHHHh----cCCHHHHHHHHHHHhH
Q 047178 194 NMLERLIKLFKGLEAFDRKPPEKSIVQRVADAYEV----LGLLEEKERVLEKYKD 244 (287)
Q Consensus 194 G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k----~G~leeA~~ll~~m~~ 244 (287)
+++++|+.+|+...+.+ + ...+..+-..|.. .+++++|...+++...
T Consensus 164 ~~~~~A~~~~~~a~~~~---~-~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~ 214 (273)
T 1ouv_A 164 KDLKKALASYDKACDLK---D-SPGCFNAGNMYHHGEGATKNFKEALARYSKACE 214 (273)
T ss_dssp CCHHHHHHHHHHHHHTT---C-HHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCC---C-HHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHh
Confidence 55555555555555443 1 1234444445555 5555555555554433
No 91
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=97.49 E-value=0.0015 Score=52.84 Aligned_cols=136 Identities=10% Similarity=0.034 Sum_probs=97.6
Q ss_pred HHHHHHHHccchhhHHHHHHHHHH----CCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHhhhC--CCCCCC---hhhH
Q 047178 114 KALLALEKEQQWHRVVQVIKWMLS----KGQGS-TMGTCGQLIRALDMDHRAEEAHKFWEKRIGI--DLHSVP---WQLC 183 (287)
Q Consensus 114 ~ai~~L~k~~~~~~A~qv~~~M~~----~G~~p-d~~TYnaLI~~y~K~G~leeA~~lF~eM~~~--g~~sv~---~~ty 183 (287)
.+-..+...|++++|...+....+ .|..+ ...+|+.+-..|...|+.++|...|++.... .....+ ...|
T Consensus 31 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 110 (203)
T 3gw4_A 31 MLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANA 110 (203)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHH
Confidence 344456678889999888877664 22222 3456888888999999999999999986542 110011 1357
Q ss_pred HHHHHHHHHcCCHhHHHHHHHHHHH----CCCCCChHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHHhhh
Q 047178 184 KSMIAIYYRNNMLERLIKLFKGLEA----FDRKPPEKSIVQRVADAYEVLGLLEEKERVLEKYKDLFTEK 249 (287)
Q Consensus 184 NsmIsgY~k~G~~eeA~~Lf~eM~~----~Gi~PD~~~Ty~sLI~a~~k~G~leeA~~ll~~m~~l~~~~ 249 (287)
+.+-..|...|++++|...|.+... .+-.+....++..+-..|...|++++|...+++...+....
T Consensus 111 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 180 (203)
T 3gw4_A 111 YEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAEL 180 (203)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHc
Confidence 8888899999999999999998763 23222222345677788999999999999999888877654
No 92
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=97.48 E-value=0.0029 Score=56.22 Aligned_cols=126 Identities=13% Similarity=-0.003 Sum_probs=83.0
Q ss_pred HHHHHHHccchhhHHHHHHHHHHCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHcC
Q 047178 115 ALLALEKEQQWHRVVQVIKWMLSKGQGSTMGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNN 194 (287)
Q Consensus 115 ai~~L~k~~~~~~A~qv~~~M~~~G~~pd~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~G 194 (287)
.-..+...|++++|.++++..++.. .-+...+..|-..|...|+.++|..+|++....+- .+...+...-..+.+.|
T Consensus 123 ~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p--~~~~~~~~~~~~l~~~~ 199 (287)
T 3qou_A 123 QAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQ--DTRYQGLVAQIELLXQA 199 (287)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGC--SHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhc--chHHHHHHHHHHHHhhc
Confidence 3444567788888888888877642 22456778888888899999999988888765431 11111222222355667
Q ss_pred CHhHHHHHHHHHHHCCCCCChHHHHHHHHHHHHhcCCHHHHHHHHHHHhHH
Q 047178 195 MLERLIKLFKGLEAFDRKPPEKSIVQRVADAYEVLGLLEEKERVLEKYKDL 245 (287)
Q Consensus 195 ~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~G~leeA~~ll~~m~~l 245 (287)
..++|+..|++.... .||....+..+-..|...|++++|...+.+...+
T Consensus 200 ~~~~a~~~l~~al~~--~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~ 248 (287)
T 3qou_A 200 ADTPEIQQLQQQVAE--NPEDAALATQLALQLHQVGRNEEALELLFGHLRX 248 (287)
T ss_dssp TSCHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccCccHHHHHHHHhc--CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 777777777776654 3554555666777777777777777777766554
No 93
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=97.47 E-value=0.016 Score=50.92 Aligned_cols=136 Identities=15% Similarity=0.110 Sum_probs=97.8
Q ss_pred HHHHHHHHHHHccchhhHHHHHHHHHHCCCCCC-----hhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCC-C---hh
Q 047178 111 SLKKALLALEKEQQWHRVVQVIKWMLSKGQGST-----MGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSV-P---WQ 181 (287)
Q Consensus 111 s~~~ai~~L~k~~~~~~A~qv~~~M~~~G~~pd-----~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv-~---~~ 181 (287)
.+...+..+...+++++|++.+....+.....+ ...+..+-..|...|+.++|...|.+......... + ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 445566778889999999999988776532211 12244455667788999999999998765321111 1 13
Q ss_pred hHHHHHHHHHHcCCHhHHHHHHHHHHH----CCCCCC-hHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHH
Q 047178 182 LCKSMIAIYYRNNMLERLIKLFKGLEA----FDRKPP-EKSIVQRVADAYEVLGLLEEKERVLEKYKDLF 246 (287)
Q Consensus 182 tyNsmIsgY~k~G~~eeA~~Lf~eM~~----~Gi~PD-~~~Ty~sLI~a~~k~G~leeA~~ll~~m~~l~ 246 (287)
+|+.+-..|...|++++|+..|.+... .+-.+. .+.+|..+...|...|++++|...+++...+.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~ 226 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEIS 226 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 688899999999999999999998762 221121 11467788889999999999999999877664
No 94
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=97.46 E-value=0.00074 Score=57.86 Aligned_cols=137 Identities=18% Similarity=0.110 Sum_probs=98.1
Q ss_pred HHHHHHHHHHccchhhHHHHHHHHHHC----CCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHhhhCC--CCCCC--hhh
Q 047178 112 LKKALLALEKEQQWHRVVQVIKWMLSK----GQGS-TMGTCGQLIRALDMDHRAEEAHKFWEKRIGID--LHSVP--WQL 182 (287)
Q Consensus 112 ~~~ai~~L~k~~~~~~A~qv~~~M~~~----G~~p-d~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g--~~sv~--~~t 182 (287)
+..+-..+...|++++|.+.+....+. +..+ ...+|..+-..|...|+.++|...|++..... ....+ ..+
T Consensus 186 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 265 (338)
T 3ro2_A 186 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQS 265 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHH
Confidence 334455567788999999888876642 1111 12378888999999999999999999875421 10011 246
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHHC----CCCCChHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHHhh
Q 047178 183 CKSMIAIYYRNNMLERLIKLFKGLEAF----DRKPPEKSIVQRVADAYEVLGLLEEKERVLEKYKDLFTE 248 (287)
Q Consensus 183 yNsmIsgY~k~G~~eeA~~Lf~eM~~~----Gi~PD~~~Ty~sLI~a~~k~G~leeA~~ll~~m~~l~~~ 248 (287)
|..+-..|...|++++|...|.+.... +-.+....++..+...|...|++++|...+++...+...
T Consensus 266 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 266 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 888889999999999999999987542 323332346778888999999999999999998877654
No 95
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=97.46 E-value=0.0083 Score=43.39 Aligned_cols=98 Identities=16% Similarity=0.062 Sum_probs=80.8
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChHHHHHHHH
Q 047178 144 MGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNNMLERLIKLFKGLEAFDRKPPEKSIVQRVA 223 (287)
Q Consensus 144 ~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI 223 (287)
...|..+...+...|++++|...|++....+- .+...|..+-..|.+.|++++|...|.+..... |+....+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a 79 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDP--HNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK--PDWGKGYSRKA 79 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC--CcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC--cccHHHHHHHH
Confidence 45677888899999999999999999876542 233568888889999999999999999988753 54446678888
Q ss_pred HHHHhcCCHHHHHHHHHHHhHH
Q 047178 224 DAYEVLGLLEEKERVLEKYKDL 245 (287)
Q Consensus 224 ~a~~k~G~leeA~~ll~~m~~l 245 (287)
..|...|++++|...+++...+
T Consensus 80 ~~~~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 80 AALEFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHhhHHHHHHHHHHHHHc
Confidence 8999999999999999876654
No 96
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=97.45 E-value=0.0052 Score=52.67 Aligned_cols=128 Identities=19% Similarity=0.146 Sum_probs=95.3
Q ss_pred HHHHHHHccchhhHHHHHHHHHHCCCCCC----hhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCC-hhhHHHHHHH
Q 047178 115 ALLALEKEQQWHRVVQVIKWMLSKGQGST----MGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVP-WQLCKSMIAI 189 (287)
Q Consensus 115 ai~~L~k~~~~~~A~qv~~~M~~~G~~pd----~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~-~~tyNsmIsg 189 (287)
.-..+.+.|++++|+..|...++.. |+ ...+.-|-..|.+.|+.++|...|++.....-..+. ...|..+-.+
T Consensus 21 ~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~ 98 (261)
T 3qky_A 21 RAMEFYNQGKYDRAIEYFKAVFTYG--RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMC 98 (261)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHGGGC--SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhC--CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHH
Confidence 3445678899999999999988753 33 456777888899999999999999999875311111 1345566777
Q ss_pred HHH--------cCCHhHHHHHHHHHHHCCCCCChHHHH-----------------HHHHHHHHhcCCHHHHHHHHHHHhH
Q 047178 190 YYR--------NNMLERLIKLFKGLEAFDRKPPEKSIV-----------------QRVADAYEVLGLLEEKERVLEKYKD 244 (287)
Q Consensus 190 Y~k--------~G~~eeA~~Lf~eM~~~Gi~PD~~~Ty-----------------~sLI~a~~k~G~leeA~~ll~~m~~ 244 (287)
|.+ .|++++|+..|++..... |+..... -.+-..|.+.|++++|...+++...
T Consensus 99 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 176 (261)
T 3qky_A 99 YYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFD 176 (261)
T ss_dssp HHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 888 999999999999988753 4432223 3446678899999999999988765
Q ss_pred HH
Q 047178 245 LF 246 (287)
Q Consensus 245 l~ 246 (287)
.+
T Consensus 177 ~~ 178 (261)
T 3qky_A 177 AY 178 (261)
T ss_dssp HC
T ss_pred HC
Confidence 44
No 97
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.45 E-value=0.0024 Score=48.13 Aligned_cols=90 Identities=7% Similarity=-0.119 Sum_probs=49.5
Q ss_pred HHHHccchhhHHHHHHHHHHCCCCCCh----hHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCC-hhhHHHHHHHHHH
Q 047178 118 ALEKEQQWHRVVQVIKWMLSKGQGSTM----GTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVP-WQLCKSMIAIYYR 192 (287)
Q Consensus 118 ~L~k~~~~~~A~qv~~~M~~~G~~pd~----~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~-~~tyNsmIsgY~k 192 (287)
.+...|++++|+..|....+.. |+. ..+..+-..|.+.|+.++|...|++....+-.... ...+..+-.+|.+
T Consensus 11 ~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~ 88 (129)
T 2xev_A 11 DALKNGKYDDASQLFLSFLELY--PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYG 88 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHH
Confidence 3445666666666666665532 222 24555555666666666666666666553311000 1234445556666
Q ss_pred cCCHhHHHHHHHHHHHC
Q 047178 193 NNMLERLIKLFKGLEAF 209 (287)
Q Consensus 193 ~G~~eeA~~Lf~eM~~~ 209 (287)
.|++++|...|++....
T Consensus 89 ~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 89 EGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHH
Confidence 66666666666666554
No 98
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=97.44 E-value=0.009 Score=57.09 Aligned_cols=134 Identities=13% Similarity=0.003 Sum_probs=99.4
Q ss_pred HHHHHHHHHHHccchhhHHHHHHHHHHCCCCCChhHHH--HHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHH
Q 047178 111 SLKKALLALEKEQQWHRVVQVIKWMLSKGQGSTMGTCG--QLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIA 188 (287)
Q Consensus 111 s~~~ai~~L~k~~~~~~A~qv~~~M~~~G~~pd~~TYn--aLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIs 188 (287)
.+......+.+.|++++|.++|+...+..- .+...|- +++. |...|+.++|..+|++..+..- .....|..++.
T Consensus 358 ~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~-~~~~~~~~~a~~~-~~~~~~~~~A~~~~e~al~~~p--~~~~~~~~~~~ 433 (530)
T 2ooe_A 358 VYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALME-YYCSKDKSVAFKIFELGLKKYG--DIPEYVLAYID 433 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCTT-CCTHHHHHHHHHH-HHHTCCHHHHHHHHHHHHHHHT--TCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhccC-CchHHHHHHHHHH-HHHcCChhHHHHHHHHHHHHCC--CCHHHHHHHHH
Confidence 455666667788999999999998876421 1222232 2232 3468999999999998876431 22357999999
Q ss_pred HHHHcCCHhHHHHHHHHHHHCC-CCCC-hHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHHhh
Q 047178 189 IYYRNNMLERLIKLFKGLEAFD-RKPP-EKSIVQRVADAYEVLGLLEEKERVLEKYKDLFTE 248 (287)
Q Consensus 189 gY~k~G~~eeA~~Lf~eM~~~G-i~PD-~~~Ty~sLI~a~~k~G~leeA~~ll~~m~~l~~~ 248 (287)
.+.+.|+.++|..+|+.....+ ..|+ ....|...+.-....|+.+.+..++..+.+.+-.
T Consensus 434 ~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 434 YLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 495 (530)
T ss_dssp HHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHH
T ss_pred HHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCch
Confidence 9999999999999999998864 3343 1236777788888899999999999988887753
No 99
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=97.44 E-value=0.0013 Score=63.08 Aligned_cols=129 Identities=9% Similarity=-0.015 Sum_probs=105.3
Q ss_pred HHHHHHHHHHHccch-hhHHHHHHHHHHCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHH
Q 047178 111 SLKKALLALEKEQQW-HRVVQVIKWMLSKGQGSTMGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAI 189 (287)
Q Consensus 111 s~~~ai~~L~k~~~~-~~A~qv~~~M~~~G~~pd~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsg 189 (287)
.+...-..+...+++ ++|++.+...++.. ..+..+|..|-..|.+.|++++|.+.|++....+ +....|..+-..
T Consensus 104 ~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~lg~~ 179 (474)
T 4abn_A 104 ALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHC---KNKVSLQNLSMV 179 (474)
T ss_dssp HHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC---CCHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---CCHHHHHHHHHH
Confidence 334444556778899 99999999987753 2346789999999999999999999999998765 234578888889
Q ss_pred HHHc---------CCHhHHHHHHHHHHHCCCCCChHHHHHHHHHHHHhc--------CCHHHHHHHHHHHhHH
Q 047178 190 YYRN---------NMLERLIKLFKGLEAFDRKPPEKSIVQRVADAYEVL--------GLLEEKERVLEKYKDL 245 (287)
Q Consensus 190 Y~k~---------G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~--------G~leeA~~ll~~m~~l 245 (287)
|.+. |++++|++.|++..+. .|+....|..+-.+|... |++++|...+++...+
T Consensus 180 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 250 (474)
T 4abn_A 180 LRQLQTDSGDEHSRHVMDSVRQAKLAVQM--DVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKV 250 (474)
T ss_dssp HTTCCCSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHhccCChhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHh
Confidence 9999 9999999999998875 466567788888899998 9999999999877665
No 100
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.43 E-value=0.016 Score=49.59 Aligned_cols=125 Identities=12% Similarity=0.127 Sum_probs=101.4
Q ss_pred HHHHHHHHHHHH----ccchhhHHHHHHHHHHCCCCCChhHHHHHHHHHHH----cCCHHHHHHHHHHhhhCCCCCCChh
Q 047178 110 GSLKKALLALEK----EQQWHRVVQVIKWMLSKGQGSTMGTCGQLIRALDM----DHRAEEAHKFWEKRIGIDLHSVPWQ 181 (287)
Q Consensus 110 ~s~~~ai~~L~k----~~~~~~A~qv~~~M~~~G~~pd~~TYnaLI~~y~K----~G~leeA~~lF~eM~~~g~~sv~~~ 181 (287)
..+..+-..+.. .+++++|++.|....+.| +..++..|-..|.. .|+.++|...|++....+. ..
T Consensus 39 ~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~----~~ 111 (273)
T 1ouv_A 39 SGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKY----AE 111 (273)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC----HH
T ss_pred HHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcCC----cc
Confidence 344444455667 889999999999988876 67788888888999 9999999999999887652 24
Q ss_pred hHHHHHHHHHH----cCCHhHHHHHHHHHHHCCCCCChHHHHHHHHHHHHh----cCCHHHHHHHHHHHhHH
Q 047178 182 LCKSMIAIYYR----NNMLERLIKLFKGLEAFDRKPPEKSIVQRVADAYEV----LGLLEEKERVLEKYKDL 245 (287)
Q Consensus 182 tyNsmIsgY~k----~G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k----~G~leeA~~ll~~m~~l 245 (287)
.|..|=..|.+ .|++++|+++|.+-.+.+ + ...+..+-..|.. .++.++|...+++...+
T Consensus 112 a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~-~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~ 179 (273)
T 1ouv_A 112 GCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---D-GDGCTILGSLYDAGRGTPKDLKKALASYDKACDL 179 (273)
T ss_dssp HHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---C-HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---c-HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence 57778888888 999999999999999877 2 2446677777887 99999999999887655
No 101
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=97.42 E-value=0.0059 Score=53.68 Aligned_cols=130 Identities=10% Similarity=0.072 Sum_probs=99.8
Q ss_pred HHHccchhhHHHHHHHHHHCCCC-CC----hhHHHHHHHHHHHcCCHHHHHHHHHHhhh----C-CCCCCCh--hhHHHH
Q 047178 119 LEKEQQWHRVVQVIKWMLSKGQG-ST----MGTCGQLIRALDMDHRAEEAHKFWEKRIG----I-DLHSVPW--QLCKSM 186 (287)
Q Consensus 119 L~k~~~~~~A~qv~~~M~~~G~~-pd----~~TYnaLI~~y~K~G~leeA~~lF~eM~~----~-g~~sv~~--~tyNsm 186 (287)
+...+++++|++.+....+.... +| ..+|+.|-..|...|+.++|...|++... . +. .+. .+|+.+
T Consensus 125 ~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~--~~~~~~~~~nl 202 (293)
T 3u3w_A 125 VLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDN--EEFDVKVRYNH 202 (293)
T ss_dssp HTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCC--HHHHHHHHHHH
T ss_pred HHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccc--hhHHHHHHHHH
Confidence 34556889999999998874322 23 23689999999999999999999999873 1 11 111 368889
Q ss_pred HHHHHHcCCHhHHHHHHHHHHH----CCCCCChHHHHHHHHHHHHhcC-CHHHHHHHHHHHhHHHhhhh
Q 047178 187 IAIYYRNNMLERLIKLFKGLEA----FDRKPPEKSIVQRVADAYEVLG-LLEEKERVLEKYKDLFTEKE 250 (287)
Q Consensus 187 IsgY~k~G~~eeA~~Lf~eM~~----~Gi~PD~~~Ty~sLI~a~~k~G-~leeA~~ll~~m~~l~~~~~ 250 (287)
-..|.+.|++++|++.|.+-.+ .+-.+....+|..+-.+|.+.| ..++|...+++...++...-
T Consensus 203 g~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~~~~~ 271 (293)
T 3u3w_A 203 AKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDILE 271 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999987653 4444443466888888999999 57999999999888887553
No 102
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=97.41 E-value=0.0014 Score=58.38 Aligned_cols=136 Identities=16% Similarity=0.084 Sum_probs=100.0
Q ss_pred HHHHHHHHHHccchhhHHHHHHHHHHCCC-CCC----hhHHHHHHHHHHHcCCHHHHHHHHHHhhhCC--CCCCC--hhh
Q 047178 112 LKKALLALEKEQQWHRVVQVIKWMLSKGQ-GST----MGTCGQLIRALDMDHRAEEAHKFWEKRIGID--LHSVP--WQL 182 (287)
Q Consensus 112 ~~~ai~~L~k~~~~~~A~qv~~~M~~~G~-~pd----~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g--~~sv~--~~t 182 (287)
+..+-..+...|++++|++.+....+..- .++ ..+|..+-..|...|+.++|...|++..... ....+ ..+
T Consensus 190 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 269 (406)
T 3sf4_A 190 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQS 269 (406)
T ss_dssp HHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHH
Confidence 33445567788999999999888764211 111 2378889999999999999999999875321 10011 246
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHH----CCCCCChHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHHh
Q 047178 183 CKSMIAIYYRNNMLERLIKLFKGLEA----FDRKPPEKSIVQRVADAYEVLGLLEEKERVLEKYKDLFT 247 (287)
Q Consensus 183 yNsmIsgY~k~G~~eeA~~Lf~eM~~----~Gi~PD~~~Ty~sLI~a~~k~G~leeA~~ll~~m~~l~~ 247 (287)
|..+-..|.+.|++++|.+.|.+... .+-.+....++..+-..|...|++++|...+++...+..
T Consensus 270 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 338 (406)
T 3sf4_A 270 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 338 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 88899999999999999999998764 233333345677888899999999999999988776644
No 103
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=97.40 E-value=0.0019 Score=62.46 Aligned_cols=118 Identities=9% Similarity=0.000 Sum_probs=83.9
Q ss_pred cchhhHHHHHHHHHHCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHcCCHhHHHHH
Q 047178 123 QQWHRVVQVIKWMLSKGQGSTMGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNNMLERLIKL 202 (287)
Q Consensus 123 ~~~~~A~qv~~~M~~~G~~pd~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~G~~eeA~~L 202 (287)
|++++|++.++...+.. ..+...|..+-..|.+.|+.++|.+.|++..+.+- .....|..+-..|.+.|++++|.+.
T Consensus 3 g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHP--GHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTST--TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 56677777777765431 23467889999999999999999999999887642 2335688899999999999999999
Q ss_pred HHHHHHCCCCCChHHHHHHHHHHHHhcCCHHHHHHHHHHHhHH
Q 047178 203 FKGLEAFDRKPPEKSIVQRVADAYEVLGLLEEKERVLEKYKDL 245 (287)
Q Consensus 203 f~eM~~~Gi~PD~~~Ty~sLI~a~~k~G~leeA~~ll~~m~~l 245 (287)
|++..+. .|+....+..+-..|...|++++|.+.+++...+
T Consensus 80 ~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 120 (568)
T 2vsy_A 80 LQQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL 120 (568)
T ss_dssp HHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9998875 4655577888899999999999999999876554
No 104
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=97.39 E-value=0.0032 Score=52.90 Aligned_cols=123 Identities=16% Similarity=0.137 Sum_probs=62.8
Q ss_pred HHHHHccchhhHHHHHHHHHHCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHcCC-
Q 047178 117 LALEKEQQWHRVVQVIKWMLSKGQGSTMGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNNM- 195 (287)
Q Consensus 117 ~~L~k~~~~~~A~qv~~~M~~~G~~pd~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~G~- 195 (287)
..+.+.|++++|+..++..++.. +-+...|..|-..|...|+.++|...|++....+- .....|..|-..|...|.
T Consensus 62 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P--~~~~a~~~lg~~~~~~~~~ 138 (208)
T 3urz_A 62 LAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEA--DNLAANIFLGNYYYLTAEQ 138 (208)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHHhHH
Confidence 34556666666766666665532 12445566666666667777777777766655431 122345555555554443
Q ss_pred -HhHHHHHHHHHHHCCCCCChH-HHHHHHHHHHHhcCCHHHHHHHHHHHhHHH
Q 047178 196 -LERLIKLFKGLEAFDRKPPEK-SIVQRVADAYEVLGLLEEKERVLEKYKDLF 246 (287)
Q Consensus 196 -~eeA~~Lf~eM~~~Gi~PD~~-~Ty~sLI~a~~k~G~leeA~~ll~~m~~l~ 246 (287)
.+++...|.... .|+.. ..+...-.++...|++++|...|++...+.
T Consensus 139 ~~~~~~~~~~~~~----~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~ 187 (208)
T 3urz_A 139 EKKKLETDYKKLS----SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRF 187 (208)
T ss_dssp HHHHHHHHHC-------CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHHHh----CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 233344443332 22210 111112224445667777777777655543
No 105
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=97.38 E-value=0.0015 Score=59.16 Aligned_cols=133 Identities=9% Similarity=0.042 Sum_probs=100.4
Q ss_pred HHHHHHHHccchhhHHHHHHHHHHCCCCCCh----hHHHHHHHHHHHcCCHHHHHHHHHHhhhC--CCCCCC--hhhHHH
Q 047178 114 KALLALEKEQQWHRVVQVIKWMLSKGQGSTM----GTCGQLIRALDMDHRAEEAHKFWEKRIGI--DLHSVP--WQLCKS 185 (287)
Q Consensus 114 ~ai~~L~k~~~~~~A~qv~~~M~~~G~~pd~----~TYnaLI~~y~K~G~leeA~~lF~eM~~~--g~~sv~--~~tyNs 185 (287)
..-..+...|++++|+.+++...+.+-. +. .+|..+-..|...|+.++|...|++.... .....+ ...|..
T Consensus 53 ~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 131 (411)
T 4a1s_A 53 LEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGN 131 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHH
Confidence 3444567889999999999998886322 22 47888999999999999999999987542 000011 246888
Q ss_pred HHHHHHHcCCHhHHHHHHHHHHHC----CCCCChHHHHHHHHHHHHhcCC-----------------HHHHHHHHHHHhH
Q 047178 186 MIAIYYRNNMLERLIKLFKGLEAF----DRKPPEKSIVQRVADAYEVLGL-----------------LEEKERVLEKYKD 244 (287)
Q Consensus 186 mIsgY~k~G~~eeA~~Lf~eM~~~----Gi~PD~~~Ty~sLI~a~~k~G~-----------------leeA~~ll~~m~~ 244 (287)
+-..|...|++++|...|.+.... +-.|+...++..+-..|...|+ +++|...+.+...
T Consensus 132 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~ 211 (411)
T 4a1s_A 132 LGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLK 211 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHH
Confidence 999999999999999999987643 2234444567888889999999 9999988887666
Q ss_pred HHh
Q 047178 245 LFT 247 (287)
Q Consensus 245 l~~ 247 (287)
+..
T Consensus 212 ~~~ 214 (411)
T 4a1s_A 212 LMR 214 (411)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 106
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.36 E-value=0.00046 Score=52.54 Aligned_cols=86 Identities=10% Similarity=-0.068 Sum_probs=61.5
Q ss_pred ccchhhHHHHHHHHHHCCC--CCChhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHcCCHhHH
Q 047178 122 EQQWHRVVQVIKWMLSKGQ--GSTMGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNNMLERL 199 (287)
Q Consensus 122 ~~~~~~A~qv~~~M~~~G~--~pd~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~G~~eeA 199 (287)
.|++++|+..|...++.+. ..+..+|..|-..|.+.|+.++|...|++....+- .....|..+-.+|.+.|++++|
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFP--NHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CchHHHHHHHHHHHHcCCHHHH
Confidence 4677788888888776541 22455678888888889999999999988876542 2234577788888899999999
Q ss_pred HHHHHHHHHC
Q 047178 200 IKLFKGLEAF 209 (287)
Q Consensus 200 ~~Lf~eM~~~ 209 (287)
++.|.+....
T Consensus 81 ~~~~~~al~~ 90 (117)
T 3k9i_A 81 VELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9988887654
No 107
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=97.34 E-value=0.00087 Score=53.81 Aligned_cols=82 Identities=10% Similarity=0.133 Sum_probs=36.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChHHHHHHHHHHHHh
Q 047178 149 QLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNNMLERLIKLFKGLEAFDRKPPEKSIVQRVADAYEV 228 (287)
Q Consensus 149 aLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k 228 (287)
.|=..|.+.|+.++|.+.|++..+.+- -....|..+=..|.+.|++++|+..|+...+. .|+....|..+-..|.+
T Consensus 36 ~la~~y~~~~~~~~A~~~~~~al~~~p--~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~ 111 (150)
T 4ga2_A 36 YFAKLYYEAKEYDLAKKYICTYINVQE--RDPKAHRFLGLLYELEENTDKAVECYRRSVEL--NPTQKDLVLKIAELLCK 111 (150)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCchHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHH
Confidence 344444555555555555555443321 11223444444555555555555555544432 23333334444444555
Q ss_pred cCCHHH
Q 047178 229 LGLLEE 234 (287)
Q Consensus 229 ~G~lee 234 (287)
.|+.++
T Consensus 112 ~~~~~~ 117 (150)
T 4ga2_A 112 NDVTDG 117 (150)
T ss_dssp HCSSSS
T ss_pred cCChHH
Confidence 554443
No 108
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.33 E-value=0.0025 Score=56.42 Aligned_cols=140 Identities=11% Similarity=-0.059 Sum_probs=98.2
Q ss_pred HHHHHHHHHHHccchhhHHHHHHHHHHC----CCCCC-hhHHHHHHHHHHHc-CCHHHHHHHHHHhhhCC--CCCCC--h
Q 047178 111 SLKKALLALEKEQQWHRVVQVIKWMLSK----GQGST-MGTCGQLIRALDMD-HRAEEAHKFWEKRIGID--LHSVP--W 180 (287)
Q Consensus 111 s~~~ai~~L~k~~~~~~A~qv~~~M~~~----G~~pd-~~TYnaLI~~y~K~-G~leeA~~lF~eM~~~g--~~sv~--~ 180 (287)
.+..+-..+.+.|++++|+..++.-++. |-... ..+|+.|-..|... |+.++|...|++-.... ..... .
T Consensus 79 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~ 158 (292)
T 1qqe_A 79 TYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSN 158 (292)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHH
Confidence 4555666678889999998888776542 21111 34788888889996 99999999999875421 00011 1
Q ss_pred hhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChH-----HHHHHHHHHHHhcCCHHHHHHHHHHHhHHHhhhh
Q 047178 181 QLCKSMIAIYYRNNMLERLIKLFKGLEAFDRKPPEK-----SIVQRVADAYEVLGLLEEKERVLEKYKDLFTEKE 250 (287)
Q Consensus 181 ~tyNsmIsgY~k~G~~eeA~~Lf~eM~~~Gi~PD~~-----~Ty~sLI~a~~k~G~leeA~~ll~~m~~l~~~~~ 250 (287)
.+|+.+-..|.+.|++++|++.|++........... .+|..+..++...|++++|...+++...+...+.
T Consensus 159 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~ 233 (292)
T 1qqe_A 159 KCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFA 233 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC
Confidence 358889999999999999999999998764332211 1456667788899999999999998776655544
No 109
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=97.33 E-value=0.0039 Score=48.70 Aligned_cols=97 Identities=9% Similarity=-0.076 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChHHHHHHHHHH
Q 047178 146 TCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNNMLERLIKLFKGLEAFDRKPPEKSIVQRVADA 225 (287)
Q Consensus 146 TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a 225 (287)
.|.-+=+.|.+.|++++|.+.|++..+.+- .....|..+-.+|.+.|++++|++.|....+. .|+....|..+-.+
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~ 90 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRDP--ENAILYSNRAACLTKLMEFQRALDDCDTCIRL--DSKFIKGYIRKAAC 90 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHhhHHHhhccHHHHHHHHHHHHHh--hhhhhHHHHHHHHH
Confidence 455556678999999999999999887542 23457888999999999999999999998874 45555678888999
Q ss_pred HHhcCCHHHHHHHHHHHhHHH
Q 047178 226 YEVLGLLEEKERVLEKYKDLF 246 (287)
Q Consensus 226 ~~k~G~leeA~~ll~~m~~l~ 246 (287)
|...|++++|...+++...+-
T Consensus 91 ~~~~~~~~~A~~~~~~al~l~ 111 (126)
T 4gco_A 91 LVAMREWSKAQRAYEDALQVD 111 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHCCCHHHHHHHHHHHHHHC
Confidence 999999999999999876653
No 110
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=97.33 E-value=0.0024 Score=54.66 Aligned_cols=131 Identities=14% Similarity=0.070 Sum_probs=97.4
Q ss_pred HHHHHHccchhhHHHHHHHHHHCCCCCC----hhHHHHHHHHHHHcCCHHHHHHHHHHhhhCC--CCCCC--hhhHHHHH
Q 047178 116 LLALEKEQQWHRVVQVIKWMLSKGQGST----MGTCGQLIRALDMDHRAEEAHKFWEKRIGID--LHSVP--WQLCKSMI 187 (287)
Q Consensus 116 i~~L~k~~~~~~A~qv~~~M~~~G~~pd----~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g--~~sv~--~~tyNsmI 187 (287)
-..+...|++++|+.+++...+..-. + ..+|..+-..|...|+.++|.+.|++..... ....+ ..+|..+-
T Consensus 12 g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 90 (338)
T 3ro2_A 12 GERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLG 90 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHH
Confidence 34567889999999999998876321 2 3578889999999999999999999865320 00011 24688899
Q ss_pred HHHHHcCCHhHHHHHHHHHHHC----CCCCChHHHHHHHHHHHHhcCC--------------------HHHHHHHHHHHh
Q 047178 188 AIYYRNNMLERLIKLFKGLEAF----DRKPPEKSIVQRVADAYEVLGL--------------------LEEKERVLEKYK 243 (287)
Q Consensus 188 sgY~k~G~~eeA~~Lf~eM~~~----Gi~PD~~~Ty~sLI~a~~k~G~--------------------leeA~~ll~~m~ 243 (287)
..|...|++++|.+.|.+.... +-.+....++..+...|...|+ +++|...+++..
T Consensus 91 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~ 170 (338)
T 3ro2_A 91 NTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENL 170 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 9999999999999999987542 2222222367788888999999 999998888766
Q ss_pred HHHh
Q 047178 244 DLFT 247 (287)
Q Consensus 244 ~l~~ 247 (287)
.+..
T Consensus 171 ~~~~ 174 (338)
T 3ro2_A 171 SLVT 174 (338)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5543
No 111
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=97.33 E-value=0.0039 Score=53.43 Aligned_cols=133 Identities=9% Similarity=0.012 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHccchhhHHHHHHHHHHCCC-CCC-hhHHHHHHHHHHH--------cCCHHHHHHHHHHhhhCCCCCCCh
Q 047178 111 SLKKALLALEKEQQWHRVVQVIKWMLSKGQ-GST-MGTCGQLIRALDM--------DHRAEEAHKFWEKRIGIDLHSVPW 180 (287)
Q Consensus 111 s~~~ai~~L~k~~~~~~A~qv~~~M~~~G~-~pd-~~TYnaLI~~y~K--------~G~leeA~~lF~eM~~~g~~sv~~ 180 (287)
.+..+-..+.+.|++++|+..|+..++..- .|+ ..++..+-.+|.+ .|+.++|...|++.....-. ..
T Consensus 54 a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~--~~ 131 (261)
T 3qky_A 54 AQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN--HE 131 (261)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT--CT
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC--ch
Confidence 344455567889999999999999887521 122 3456667777888 99999999999999875421 11
Q ss_pred hhH-----------------HHHHHHHHHcCCHhHHHHHHHHHHHCCCCCC---hHHHHHHHHHHHHhc----------C
Q 047178 181 QLC-----------------KSMIAIYYRNNMLERLIKLFKGLEAFDRKPP---EKSIVQRVADAYEVL----------G 230 (287)
Q Consensus 181 ~ty-----------------NsmIsgY~k~G~~eeA~~Lf~eM~~~Gi~PD---~~~Ty~sLI~a~~k~----------G 230 (287)
..+ -.+-..|.+.|++++|+..|++..... |+ ..-.+..+..+|... |
T Consensus 132 ~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~ 209 (261)
T 3qky_A 132 LVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAY--PDTPWADDALVGAMRAYIAYAEQSVRARQPE 209 (261)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTSTTHHHHHHHHHHHHHHHHHTSCGGGHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC--CCCchHHHHHHHHHHHHHHhcccchhhcccc
Confidence 223 345678899999999999999998643 43 223456667778766 8
Q ss_pred CHHHHHHHHHHHhHHHh
Q 047178 231 LLEEKERVLEKYKDLFT 247 (287)
Q Consensus 231 ~leeA~~ll~~m~~l~~ 247 (287)
++++|...+++....+-
T Consensus 210 ~~~~A~~~~~~~~~~~p 226 (261)
T 3qky_A 210 RYRRAVELYERLLQIFP 226 (261)
T ss_dssp HHHHHHHHHHHHHHHCT
T ss_pred hHHHHHHHHHHHHHHCC
Confidence 89999999988776553
No 112
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.32 E-value=0.0036 Score=45.06 Aligned_cols=92 Identities=8% Similarity=-0.156 Sum_probs=75.3
Q ss_pred HHHHHHccchhhHHHHHHHHHHCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCC--ChhhHHHHHHHHHHc
Q 047178 116 LLALEKEQQWHRVVQVIKWMLSKGQGSTMGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSV--PWQLCKSMIAIYYRN 193 (287)
Q Consensus 116 i~~L~k~~~~~~A~qv~~~M~~~G~~pd~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv--~~~tyNsmIsgY~k~ 193 (287)
-..+...|++++|+..++...+.. ..+..+|..+-..|.+.|+.++|...|++....+- . ....|..+-..|.+.
T Consensus 13 ~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~~~~l~~~~~~~ 89 (112)
T 2kck_A 13 GVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIE--DEYNKDVWAAKADALRYI 89 (112)
T ss_dssp HHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSC--CTTCHHHHHHHHHHHTTC
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCc--ccchHHHHHHHHHHHHHH
Confidence 344667889999999999887753 23567888899999999999999999999987642 2 335688889999999
Q ss_pred -CCHhHHHHHHHHHHHCC
Q 047178 194 -NMLERLIKLFKGLEAFD 210 (287)
Q Consensus 194 -G~~eeA~~Lf~eM~~~G 210 (287)
|++++|.+.|.+.....
T Consensus 90 ~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 90 EGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp SSCSHHHHHHHHHHGGGC
T ss_pred hCCHHHHHHHHHHHhhcc
Confidence 99999999999987654
No 113
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=97.27 E-value=0.0055 Score=50.46 Aligned_cols=119 Identities=12% Similarity=-0.011 Sum_probs=87.6
Q ss_pred HHHHHHHHccchhhHHHHHHHHHHCCC-CCC--------------hhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCC
Q 047178 114 KALLALEKEQQWHRVVQVIKWMLSKGQ-GST--------------MGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSV 178 (287)
Q Consensus 114 ~ai~~L~k~~~~~~A~qv~~~M~~~G~-~pd--------------~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv 178 (287)
..-..+.+.+++++|++.+...++..- .|+ ..+|..+-.+|.+.|+.++|...|++....+- .
T Consensus 43 ~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p--~ 120 (198)
T 2fbn_A 43 EEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDK--N 120 (198)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST--T
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc--c
Confidence 344456788999999999998876421 111 26788888889999999999999999877542 2
Q ss_pred ChhhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChHHHHHHHHHHHHhcCCHHHHH
Q 047178 179 PWQLCKSMIAIYYRNNMLERLIKLFKGLEAFDRKPPEKSIVQRVADAYEVLGLLEEKE 236 (287)
Q Consensus 179 ~~~tyNsmIsgY~k~G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~G~leeA~ 236 (287)
....|..+-.+|...|++++|++.|.+.... .|+....+..+...+...++.+++.
T Consensus 121 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 121 NVKALYKLGVANMYFGFLEEAKENLYKAASL--NPNNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHC--
T ss_pred cHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 2346777888999999999999999988764 4554455666766777777666665
No 114
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=97.26 E-value=0.011 Score=48.35 Aligned_cols=97 Identities=5% Similarity=-0.028 Sum_probs=78.8
Q ss_pred HHHHHHHHccchhhHHHHHHHHHHCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHc
Q 047178 114 KALLALEKEQQWHRVVQVIKWMLSKGQGSTMGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRN 193 (287)
Q Consensus 114 ~ai~~L~k~~~~~~A~qv~~~M~~~G~~pd~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~ 193 (287)
..-..+.+.|++++|+..|+..++.. +.+...|..|=.+|.+.|+.++|...|++....+- .....|..+=.+|.+.
T Consensus 41 ~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P--~~~~~~~~lg~~~~~l 117 (151)
T 3gyz_A 41 SYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGK--NDYTPVFHTGQCQLRL 117 (151)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSS--SCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCC--CCcHHHHHHHHHHHHc
Confidence 33445788999999999999988752 23567888999999999999999999999987542 2234677788999999
Q ss_pred CCHhHHHHHHHHHHHCCCCCCh
Q 047178 194 NMLERLIKLFKGLEAFDRKPPE 215 (287)
Q Consensus 194 G~~eeA~~Lf~eM~~~Gi~PD~ 215 (287)
|++++|...|+...+. .||.
T Consensus 118 g~~~eA~~~~~~al~l--~~~~ 137 (151)
T 3gyz_A 118 KAPLKAKECFELVIQH--SNDE 137 (151)
T ss_dssp TCHHHHHHHHHHHHHH--CCCH
T ss_pred CCHHHHHHHHHHHHHh--CCCH
Confidence 9999999999998875 4774
No 115
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=97.26 E-value=0.0062 Score=49.10 Aligned_cols=126 Identities=11% Similarity=0.009 Sum_probs=88.3
Q ss_pred HHccchhhHHHHHHHHHHCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhhhC--CCCCCC--hhhHHHHHHHHHHcCC
Q 047178 120 EKEQQWHRVVQVIKWMLSKGQGSTMGTCGQLIRALDMDHRAEEAHKFWEKRIGI--DLHSVP--WQLCKSMIAIYYRNNM 195 (287)
Q Consensus 120 ~k~~~~~~A~qv~~~M~~~G~~pd~~TYnaLI~~y~K~G~leeA~~lF~eM~~~--g~~sv~--~~tyNsmIsgY~k~G~ 195 (287)
...|++++|.++++.... .......+++.+-..|...|+.++|...|++.... .....+ ...|+.+-..|...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 356788888885554432 11134567888999999999999999999987641 110012 2468888889999999
Q ss_pred HhHHHHHHHHHHHC----CCCC-ChHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHH
Q 047178 196 LERLIKLFKGLEAF----DRKP-PEKSIVQRVADAYEVLGLLEEKERVLEKYKDLF 246 (287)
Q Consensus 196 ~eeA~~Lf~eM~~~----Gi~P-D~~~Ty~sLI~a~~k~G~leeA~~ll~~m~~l~ 246 (287)
+++|.+.|.+.... |-.| .....+..+-..+...|++++|...+++...+.
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 137 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYA 137 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 99999999886542 3222 223457777888999999999999998876654
No 116
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=97.24 E-value=0.02 Score=50.25 Aligned_cols=133 Identities=9% Similarity=0.039 Sum_probs=97.6
Q ss_pred HHHHccchhhHHHHHHHHHHCCC---CCC--hhHHHHHHHHHHHcCCHHHHHHHHHHhhh---CCCCCC--ChhhHHHHH
Q 047178 118 ALEKEQQWHRVVQVIKWMLSKGQ---GST--MGTCGQLIRALDMDHRAEEAHKFWEKRIG---IDLHSV--PWQLCKSMI 187 (287)
Q Consensus 118 ~L~k~~~~~~A~qv~~~M~~~G~---~pd--~~TYnaLI~~y~K~G~leeA~~lF~eM~~---~g~~sv--~~~tyNsmI 187 (287)
.+...|++++|++.+....+.-. .+. ..+|+.+-..|...|+.++|...|++... ...... ...+|+.+-
T Consensus 124 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg 203 (293)
T 2qfc_A 124 YVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHA 203 (293)
T ss_dssp HHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHH
T ss_pred HHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHH
Confidence 34566789999999988765321 111 34789999999999999999999998762 211000 114688889
Q ss_pred HHHHHcCCHhHHHHHHHHHHH----CCCCCChHHHHHHHHHHHHhcCCHHHH-HHHHHHHhHHHhhhh
Q 047178 188 AIYYRNNMLERLIKLFKGLEA----FDRKPPEKSIVQRVADAYEVLGLLEEK-ERVLEKYKDLFTEKE 250 (287)
Q Consensus 188 sgY~k~G~~eeA~~Lf~eM~~----~Gi~PD~~~Ty~sLI~a~~k~G~leeA-~~ll~~m~~l~~~~~ 250 (287)
..|.+.|++++|++.|++-.. .+..+....+|..+-..|.+.|+.++| ...+++...++..+-
T Consensus 204 ~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~~~~ 271 (293)
T 2qfc_A 204 KALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDILE 271 (293)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999997653 233333246678888899999999999 887888777765543
No 117
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.23 E-value=0.0098 Score=45.22 Aligned_cols=98 Identities=12% Similarity=-0.049 Sum_probs=77.0
Q ss_pred HHHHHHHHHHccchhhHHHHHHHHHHCCCCCC----hhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHH
Q 047178 112 LKKALLALEKEQQWHRVVQVIKWMLSKGQGST----MGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMI 187 (287)
Q Consensus 112 ~~~ai~~L~k~~~~~~A~qv~~~M~~~G~~pd----~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmI 187 (287)
+...-..+...+++++|++.+....+. .|+ ..+|..+-..|.+.|++++|...|++....+- .....|..+-
T Consensus 31 ~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~a 106 (148)
T 2dba_A 31 LRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDG--GDVKALYRRS 106 (148)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS--CCHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCc--cCHHHHHHHH
Confidence 333445566788999999999988764 455 57788888999999999999999999876542 2334677788
Q ss_pred HHHHHcCCHhHHHHHHHHHHHCCCCCCh
Q 047178 188 AIYYRNNMLERLIKLFKGLEAFDRKPPE 215 (287)
Q Consensus 188 sgY~k~G~~eeA~~Lf~eM~~~Gi~PD~ 215 (287)
.+|.+.|++++|...|.+.... .|+.
T Consensus 107 ~~~~~~~~~~~A~~~~~~al~~--~p~~ 132 (148)
T 2dba_A 107 QALEKLGRLDQAVLDLQRCVSL--EPKN 132 (148)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH--CSSC
T ss_pred HHHHHcCCHHHHHHHHHHHHHc--CCCc
Confidence 8999999999999999998764 4653
No 118
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=97.23 E-value=0.0057 Score=54.40 Aligned_cols=124 Identities=15% Similarity=0.083 Sum_probs=90.1
Q ss_pred hhhHHHHHHHHHH----CCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHhhhCC--CCCCC--hhhHHHHHHHHHHcCC
Q 047178 125 WHRVVQVIKWMLS----KGQGS-TMGTCGQLIRALDMDHRAEEAHKFWEKRIGID--LHSVP--WQLCKSMIAIYYRNNM 195 (287)
Q Consensus 125 ~~~A~qv~~~M~~----~G~~p-d~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g--~~sv~--~~tyNsmIsgY~k~G~ 195 (287)
+++|++.+....+ .+..+ ...+|+.+-..|...|+.++|...|++..... ....+ ..+|..+-..|...|+
T Consensus 163 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 242 (406)
T 3sf4_A 163 LQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGE 242 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCC
Confidence 8888888776543 22112 23468888899999999999999999876421 10011 1368889999999999
Q ss_pred HhHHHHHHHHHHH----CCCCCChHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHHhh
Q 047178 196 LERLIKLFKGLEA----FDRKPPEKSIVQRVADAYEVLGLLEEKERVLEKYKDLFTE 248 (287)
Q Consensus 196 ~eeA~~Lf~eM~~----~Gi~PD~~~Ty~sLI~a~~k~G~leeA~~ll~~m~~l~~~ 248 (287)
+++|...|.+... .+-.+....++..+...|...|++++|...+++...+...
T Consensus 243 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 299 (406)
T 3sf4_A 243 FETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE 299 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHh
Confidence 9999999998763 2322322356778888999999999999999887666443
No 119
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.22 E-value=0.01 Score=45.01 Aligned_cols=98 Identities=7% Similarity=-0.065 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHHHccchhhHHHHHHHHHHCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHH
Q 047178 109 VGSLKKALLALEKEQQWHRVVQVIKWMLSKGQGSTMGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIA 188 (287)
Q Consensus 109 ~~s~~~ai~~L~k~~~~~~A~qv~~~M~~~G~~pd~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIs 188 (287)
...+...-..+.+.|++++|+..|...++.. ..+...|..+-..|.+.|+.++|...|++....+- .....|..+-.
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~l~~ 85 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDG--QSVKAHFFLGQ 85 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc--hhHHHHHHHHH
Confidence 3444555566788999999999999887753 23567899999999999999999999999887542 23356888999
Q ss_pred HHHHcCCHhHHHHHHHHHHHC
Q 047178 189 IYYRNNMLERLIKLFKGLEAF 209 (287)
Q Consensus 189 gY~k~G~~eeA~~Lf~eM~~~ 209 (287)
.|.+.|++++|+..|.+....
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHH
Confidence 999999999999999987653
No 120
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.19 E-value=0.008 Score=58.86 Aligned_cols=128 Identities=13% Similarity=0.081 Sum_probs=96.3
Q ss_pred HHHHHccchhhHHHHHHHHHH---CCCCCC----hhHHHHHHHHHHHcCCHHHHHHHHHHhhh-----CCCCCCCh-hhH
Q 047178 117 LALEKEQQWHRVVQVIKWMLS---KGQGST----MGTCGQLIRALDMDHRAEEAHKFWEKRIG-----IDLHSVPW-QLC 183 (287)
Q Consensus 117 ~~L~k~~~~~~A~qv~~~M~~---~G~~pd----~~TYnaLI~~y~K~G~leeA~~lF~eM~~-----~g~~sv~~-~ty 183 (287)
..+...|++++|+.++...++ +-++++ ..++|.|-..|...|++++|+.++++... -|-.-+.. .+|
T Consensus 317 ~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l 396 (490)
T 3n71_A 317 DKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAV 396 (490)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 446678999999998877654 233443 35799999999999999999999998653 12111121 479
Q ss_pred HHHHHHHHHcCCHhHHHHHHHHHHH-----CCC-CCChHHHHHHHHHHHHhcCCHHHHHHHHHHHhH
Q 047178 184 KSMIAIYYRNNMLERLIKLFKGLEA-----FDR-KPPEKSIVQRVADAYEVLGLLEEKERVLEKYKD 244 (287)
Q Consensus 184 NsmIsgY~k~G~~eeA~~Lf~eM~~-----~Gi-~PD~~~Ty~sLI~a~~k~G~leeA~~ll~~m~~ 244 (287)
|.|=..|...|++++|..+|.+-.+ .|- .|+...+.+.+-.++...|++++|+.++..+.+
T Consensus 397 ~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 397 MRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999987642 342 355555566777788889999999999988754
No 121
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=97.18 E-value=0.0046 Score=50.17 Aligned_cols=127 Identities=11% Similarity=0.068 Sum_probs=87.4
Q ss_pred HHHHHHHHHHccchhhHHHHHHHHHHCCCCCChhHHHHHHHH--HHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHH
Q 047178 112 LKKALLALEKEQQWHRVVQVIKWMLSKGQGSTMGTCGQLIRA--LDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAI 189 (287)
Q Consensus 112 ~~~ai~~L~k~~~~~~A~qv~~~M~~~G~~pd~~TYnaLI~~--y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsg 189 (287)
+..+-..+...|++++|+..++...+. .|+...+ .+... +...+...+|...|++....+- .+...|..+-..
T Consensus 43 ~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~-~~~~~~~~~~~~~~~~a~~~~~~al~~~P--~~~~~~~~la~~ 117 (176)
T 2r5s_A 43 KLAKADCLLETKQFELAQELLATIPLE--YQDNSYK-SLIAKLELHQQAAESPELKRLEQELAANP--DNFELACELAVQ 117 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHH-HHHHHHHHHHHHTSCHHHHHHHHHHHHST--TCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHH-HHHHHHHHHhhcccchHHHHHHHHHHhCC--CCHHHHHHHHHH
Confidence 444555677899999999998876543 2343332 22221 2222333457888888876541 223467778889
Q ss_pred HHHcCCHhHHHHHHHHHHHCCCCCChHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 047178 190 YYRNNMLERLIKLFKGLEAFDRKPPEKSIVQRVADAYEVLGLLEEKERVLEKYK 243 (287)
Q Consensus 190 Y~k~G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~G~leeA~~ll~~m~ 243 (287)
|.+.|++++|...|.+.....-.++....+..+...|...|+.++|...+.+..
T Consensus 118 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 118 YNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQL 171 (176)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 999999999999999998775433212457888899999999999998887643
No 122
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=97.18 E-value=0.0086 Score=46.86 Aligned_cols=92 Identities=9% Similarity=-0.073 Sum_probs=74.3
Q ss_pred HHHHHHHccchhhHHHHHHHHHHCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHcC
Q 047178 115 ALLALEKEQQWHRVVQVIKWMLSKGQGSTMGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNN 194 (287)
Q Consensus 115 ai~~L~k~~~~~~A~qv~~~M~~~G~~pd~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~G 194 (287)
.-..+.+.|++++|+..|....... +.+...|..|-.+|.+.|+.++|...|++....+- .+...|..+-.+|...|
T Consensus 24 ~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~lg~~~~~~g 100 (142)
T 2xcb_A 24 LGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDI--NEPRFPFHAAECHLQLG 100 (142)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC--CCcHHHHHHHHHHHHcC
Confidence 3345678899999999999987643 23667788888899999999999999999887542 22345777888999999
Q ss_pred CHhHHHHHHHHHHHC
Q 047178 195 MLERLIKLFKGLEAF 209 (287)
Q Consensus 195 ~~eeA~~Lf~eM~~~ 209 (287)
++++|.+.|+.....
T Consensus 101 ~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 101 DLDGAESGFYSARAL 115 (142)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHh
Confidence 999999999987754
No 123
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=97.17 E-value=0.0093 Score=45.13 Aligned_cols=92 Identities=11% Similarity=-0.030 Sum_probs=75.5
Q ss_pred HHHHHHHccchhhHHHHHHHHHHCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHcC
Q 047178 115 ALLALEKEQQWHRVVQVIKWMLSKGQGSTMGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNN 194 (287)
Q Consensus 115 ai~~L~k~~~~~~A~qv~~~M~~~G~~pd~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~G 194 (287)
.-..+.+.|++++|++.|...++.. ..+...|..+-.+|.+.|+.++|...|++....+- .....|..+-.+|...|
T Consensus 10 ~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~lg~~~~~~~ 86 (126)
T 3upv_A 10 EGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP--NFVRAYIRKATAQIAVK 86 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHHHh
Confidence 3345678899999999999887753 23677899999999999999999999999887542 23346888889999999
Q ss_pred CHhHHHHHHHHHHHC
Q 047178 195 MLERLIKLFKGLEAF 209 (287)
Q Consensus 195 ~~eeA~~Lf~eM~~~ 209 (287)
++++|.+.|.+..+.
T Consensus 87 ~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 87 EYASALETLDAARTK 101 (126)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHh
Confidence 999999999988764
No 124
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=97.17 E-value=0.0082 Score=47.84 Aligned_cols=100 Identities=12% Similarity=-0.029 Sum_probs=83.8
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChHHHHHHH
Q 047178 143 TMGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNNMLERLIKLFKGLEAFDRKPPEKSIVQRV 222 (287)
Q Consensus 143 d~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sL 222 (287)
+...|..+-..|.+.|++++|...|++....+- .....|..+-.+|.+.|++++|+..|++..... |+....|..+
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l 85 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAP--ANPIYLSNRAAAYSASGQHEKAAEDAELATVVD--PKYSKAWSRL 85 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--cCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHH
Confidence 445678888899999999999999999887542 234568889999999999999999999988754 6555778888
Q ss_pred HHHHHhcCCHHHHHHHHHHHhHHH
Q 047178 223 ADAYEVLGLLEEKERVLEKYKDLF 246 (287)
Q Consensus 223 I~a~~k~G~leeA~~ll~~m~~l~ 246 (287)
-.+|...|++++|...+++...+.
T Consensus 86 g~~~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 86 GLARFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHhC
Confidence 999999999999999998776654
No 125
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=97.16 E-value=0.0067 Score=53.72 Aligned_cols=92 Identities=5% Similarity=-0.100 Sum_probs=55.7
Q ss_pred HHHHHHHHccchhhHHHHHHHHHHCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHc
Q 047178 114 KALLALEKEQQWHRVVQVIKWMLSKGQGSTMGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRN 193 (287)
Q Consensus 114 ~ai~~L~k~~~~~~A~qv~~~M~~~G~~pd~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~ 193 (287)
..-..+.+.|++++|+..+...++.. ..+...|..+-..|.+.|+.++|...|++....+- .....|+.+-.+|.+.
T Consensus 9 ~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~lg~~~~~~ 85 (281)
T 2c2l_A 9 EQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDG--QSVKAHFFLGQCQLEM 85 (281)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCT--TCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHc
Confidence 33344566677777777776665531 12455666666667777777777777776655431 2234466666667777
Q ss_pred CCHhHHHHHHHHHHH
Q 047178 194 NMLERLIKLFKGLEA 208 (287)
Q Consensus 194 G~~eeA~~Lf~eM~~ 208 (287)
|++++|...|.+...
T Consensus 86 g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 86 ESYDEAIANLQRAYS 100 (281)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 777777777766554
No 126
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.16 E-value=0.0067 Score=53.63 Aligned_cols=135 Identities=10% Similarity=-0.001 Sum_probs=98.2
Q ss_pred HHHHHHHHHHHccchhhHHHHHHHHHHC----CCCCC-hhHHHHHHHHHHHcCCHHHHHHHHHHhhhCC--CCCCC--hh
Q 047178 111 SLKKALLALEKEQQWHRVVQVIKWMLSK----GQGST-MGTCGQLIRALDMDHRAEEAHKFWEKRIGID--LHSVP--WQ 181 (287)
Q Consensus 111 s~~~ai~~L~k~~~~~~A~qv~~~M~~~----G~~pd-~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g--~~sv~--~~ 181 (287)
.+..+...+...|++++|++.|....+. |-.++ ..+|+-+-..|.+.|+.++|...|++-.... ..... ..
T Consensus 39 ~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~ 118 (292)
T 1qqe_A 39 LCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGAN 118 (292)
T ss_dssp HHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 3455566778889999998888776542 32222 4688999999999999999999999865421 00011 13
Q ss_pred hHHHHHHHHHHc-CCHhHHHHHHHHHHHC----CCCCChHHHHHHHHHHHHhcCCHHHHHHHHHHHhHH
Q 047178 182 LCKSMIAIYYRN-NMLERLIKLFKGLEAF----DRKPPEKSIVQRVADAYEVLGLLEEKERVLEKYKDL 245 (287)
Q Consensus 182 tyNsmIsgY~k~-G~~eeA~~Lf~eM~~~----Gi~PD~~~Ty~sLI~a~~k~G~leeA~~ll~~m~~l 245 (287)
+|+.|=..|... |++++|++.|++-.+. |-.+....+|..+...|...|++++|...+++...+
T Consensus 119 ~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 187 (292)
T 1qqe_A 119 FKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKS 187 (292)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 688888899996 9999999999987642 211111245788888999999999999999876654
No 127
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=97.13 E-value=0.013 Score=55.03 Aligned_cols=123 Identities=7% Similarity=0.004 Sum_probs=91.7
Q ss_pred HHHHHccchhhHHHHHHHHHHCCCCC-ChhHHHHHHHHHHHcCC-HHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHcC
Q 047178 117 LALEKEQQWHRVVQVIKWMLSKGQGS-TMGTCGQLIRALDMDHR-AEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNN 194 (287)
Q Consensus 117 ~~L~k~~~~~~A~qv~~~M~~~G~~p-d~~TYnaLI~~y~K~G~-leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~G 194 (287)
..+.+.|++++|++.+...++. .| +..+|+-+-..|.+.|+ +++|...|++....+- -....|+.+=..|.+.|
T Consensus 105 ~~~~~~g~~~~Al~~~~~al~l--~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P--~~~~a~~~~g~~~~~~g 180 (382)
T 2h6f_A 105 AVLQRDERSERAFKLTRDAIEL--NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP--KNYQVWHHRRVLVEWLR 180 (382)
T ss_dssp HHHHHTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHT
T ss_pred HHHHHCCChHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHcc
Confidence 3456678888888888887764 34 45667888888888886 8888888888877542 23346777888888888
Q ss_pred CHhHHHHHHHHHHHCCCCCChHHHHHHHHHHHHhcCCHHHHHHHHHHHhHH
Q 047178 195 MLERLIKLFKGLEAFDRKPPEKSIVQRVADAYEVLGLLEEKERVLEKYKDL 245 (287)
Q Consensus 195 ~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~G~leeA~~ll~~m~~l 245 (287)
++++|+..|+...+. .|+....|.-+-.++...|++++|...+++...+
T Consensus 181 ~~~eAl~~~~kal~l--dP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l 229 (382)
T 2h6f_A 181 DPSQELEFIADILNQ--DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE 229 (382)
T ss_dssp CCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Confidence 888888888888764 4555566777777888888888888888765543
No 128
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=97.12 E-value=0.0093 Score=54.07 Aligned_cols=136 Identities=10% Similarity=-0.039 Sum_probs=100.5
Q ss_pred HHHHHHHHHHccchhhHHHHHHHHHHC--CC---CC-ChhHHHHHHHHHHHcCCHHHHHHHHHHhhhCC--CCCCC--hh
Q 047178 112 LKKALLALEKEQQWHRVVQVIKWMLSK--GQ---GS-TMGTCGQLIRALDMDHRAEEAHKFWEKRIGID--LHSVP--WQ 181 (287)
Q Consensus 112 ~~~ai~~L~k~~~~~~A~qv~~~M~~~--G~---~p-d~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g--~~sv~--~~ 181 (287)
+..+-..+...|++++|++.+....+. .. .+ ...+++.|=..|...|+.++|...|++..... ....+ ..
T Consensus 146 ~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 225 (383)
T 3ulq_A 146 FFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGR 225 (383)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 334445567788999998888776542 11 11 23468888889999999999999999875421 10011 13
Q ss_pred hHHHHHHHHHHcCCHhHHHHHHHHHHHC----CCCCChHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHHh
Q 047178 182 LCKSMIAIYYRNNMLERLIKLFKGLEAF----DRKPPEKSIVQRVADAYEVLGLLEEKERVLEKYKDLFT 247 (287)
Q Consensus 182 tyNsmIsgY~k~G~~eeA~~Lf~eM~~~----Gi~PD~~~Ty~sLI~a~~k~G~leeA~~ll~~m~~l~~ 247 (287)
+|+.|=..|...|++++|++.|.+-... +-.|+...++..+-..|.+.|++++|...+++...+..
T Consensus 226 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 295 (383)
T 3ulq_A 226 TLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQ 295 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 6888999999999999999999988762 44465567788899999999999999999988776643
No 129
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.11 E-value=0.0042 Score=48.04 Aligned_cols=92 Identities=10% Similarity=-0.099 Sum_probs=54.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChHHHHHHHHHHHHh
Q 047178 149 QLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNNMLERLIKLFKGLEAFDRKPPEKSIVQRVADAYEV 228 (287)
Q Consensus 149 aLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k 228 (287)
.+-..|.+.|++++|...|++....+- .....|..+=..|.+.|++++|+..|++..+. .|+....+..+-.+|..
T Consensus 22 ~~g~~~~~~g~~~~A~~~~~~al~~~P--~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 22 EEGLSMLKLANLAEAALAFEAVCQKEP--EREEAWRSLGLTQAENEKDGLAIIALNHARML--DPKDIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHST--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHH
Confidence 344455666777777777776665431 12234555556666677777777777665553 34434455566666666
Q ss_pred cCCHHHHHHHHHHHhH
Q 047178 229 LGLLEEKERVLEKYKD 244 (287)
Q Consensus 229 ~G~leeA~~ll~~m~~ 244 (287)
.|++++|...+++...
T Consensus 98 ~g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 98 EHNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHH
Confidence 7777777766665543
No 130
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=97.09 E-value=0.0059 Score=50.03 Aligned_cols=93 Identities=9% Similarity=-0.116 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChHHHHHHHHHH
Q 047178 146 TCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNNMLERLIKLFKGLEAFDRKPPEKSIVQRVADA 225 (287)
Q Consensus 146 TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a 225 (287)
.|..+-..|...|+.++|...|++... +....|..+-..|.+.|++++|++.|.+..... |+....|..+-..
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~~-----~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~lg~~ 80 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQD-----PHSRICFNIGCMYTILKNMTEAEKAFTRSINRD--KHLAVAYFQRGML 80 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSSS-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHcC-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--ccchHHHHHHHHH
Confidence 455566778899999999999998742 233568889999999999999999999988753 5545778888899
Q ss_pred HHhcCCHHHHHHHHHHHhHH
Q 047178 226 YEVLGLLEEKERVLEKYKDL 245 (287)
Q Consensus 226 ~~k~G~leeA~~ll~~m~~l 245 (287)
|...|++++|...+++...+
T Consensus 81 ~~~~~~~~~A~~~~~~al~~ 100 (213)
T 1hh8_A 81 YYQTEKYDLAIKDLKEALIQ 100 (213)
T ss_dssp HHHTTCHHHHHHHHHHHHHT
T ss_pred HHHcccHHHHHHHHHHHHHh
Confidence 99999999999999887764
No 131
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=97.09 E-value=0.025 Score=47.74 Aligned_cols=129 Identities=11% Similarity=-0.006 Sum_probs=86.0
Q ss_pred HHHHHHccchhhHHHHHHHHHHCCCC-CC-hhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCCh-hhHHHHHHHHHH
Q 047178 116 LLALEKEQQWHRVVQVIKWMLSKGQG-ST-MGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPW-QLCKSMIAIYYR 192 (287)
Q Consensus 116 i~~L~k~~~~~~A~qv~~~M~~~G~~-pd-~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~-~tyNsmIsgY~k 192 (287)
-..+.+.|++++|+..|+.+++..-. |. ...+.-+-.+|.+.|+.++|...|++.....-..+.. ..|-.+-.+|.+
T Consensus 11 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~ 90 (225)
T 2yhc_A 11 AQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMA 90 (225)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHh
Confidence 34466778999999999998874221 11 2467778888999999999999999987643211110 122223333333
Q ss_pred ------------------cCCHhHHHHHHHHHHHCCCCCChHHHHH-----------------HHHHHHHhcCCHHHHHH
Q 047178 193 ------------------NNMLERLIKLFKGLEAFDRKPPEKSIVQ-----------------RVADAYEVLGLLEEKER 237 (287)
Q Consensus 193 ------------------~G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~-----------------sLI~a~~k~G~leeA~~ 237 (287)
.|++++|+..|++.... .||...... .+-..|.+.|++++|..
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~ 168 (225)
T 2yhc_A 91 LDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVN 168 (225)
T ss_dssp HHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred hhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHH
Confidence 57899999999998865 355422221 23446788899999999
Q ss_pred HHHHHhHHH
Q 047178 238 VLEKYKDLF 246 (287)
Q Consensus 238 ll~~m~~l~ 246 (287)
.++++...+
T Consensus 169 ~~~~~l~~~ 177 (225)
T 2yhc_A 169 RVEGMLRDY 177 (225)
T ss_dssp HHHHHHHHS
T ss_pred HHHHHHHHC
Confidence 888776665
No 132
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.07 E-value=0.0017 Score=49.30 Aligned_cols=89 Identities=13% Similarity=0.019 Sum_probs=68.0
Q ss_pred HcCCHHHHHHHHHHhhhCCCCCC-ChhhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChHHHHHHHHHHHHhcCCHHH
Q 047178 156 MDHRAEEAHKFWEKRIGIDLHSV-PWQLCKSMIAIYYRNNMLERLIKLFKGLEAFDRKPPEKSIVQRVADAYEVLGLLEE 234 (287)
Q Consensus 156 K~G~leeA~~lF~eM~~~g~~sv-~~~tyNsmIsgY~k~G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~G~lee 234 (287)
..|+.++|...|++....+...+ ....|..|-..|.+.|++++|+..|++..+.. |+...++..+..+|...|++++
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~ 79 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF--PNHQALRVFYAMVLYNLGRYEQ 79 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHHcCCHHH
Confidence 45889999999999887642111 12468889999999999999999999988753 5555678888889999999999
Q ss_pred HHHHHHHHhHHH
Q 047178 235 KERVLEKYKDLF 246 (287)
Q Consensus 235 A~~ll~~m~~l~ 246 (287)
|...+++...+.
T Consensus 80 A~~~~~~al~~~ 91 (117)
T 3k9i_A 80 GVELLLKIIAET 91 (117)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC
Confidence 999998876653
No 133
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=97.06 E-value=0.0066 Score=55.06 Aligned_cols=136 Identities=10% Similarity=0.071 Sum_probs=98.6
Q ss_pred HHHHHHHHHHccchhhHHHHHHHHHHC----CC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHhhhCC--CCCCC-hhhH
Q 047178 112 LKKALLALEKEQQWHRVVQVIKWMLSK----GQ-GSTMGTCGQLIRALDMDHRAEEAHKFWEKRIGID--LHSVP-WQLC 183 (287)
Q Consensus 112 ~~~ai~~L~k~~~~~~A~qv~~~M~~~----G~-~pd~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g--~~sv~-~~ty 183 (287)
+..+-..+...|++++|++.+....+. +. .....++..|-..|.+.|+.++|...|++..... ...+. ...+
T Consensus 227 ~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 306 (383)
T 3ulq_A 227 LYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEF 306 (383)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 334445567889999998888877652 33 3345678888899999999999999999865421 00011 1236
Q ss_pred HHHHHHHHHcCC---HhHHHHHHHHHHHCCCCCChHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHHhhhh
Q 047178 184 KSMIAIYYRNNM---LERLIKLFKGLEAFDRKPPEKSIVQRVADAYEVLGLLEEKERVLEKYKDLFTEKE 250 (287)
Q Consensus 184 NsmIsgY~k~G~---~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~G~leeA~~ll~~m~~l~~~~~ 250 (287)
+.|-..|...|+ +++|+.+|++. +..|+...++..+-..|...|+.++|...+++...+.....
T Consensus 307 ~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~i~ 373 (383)
T 3ulq_A 307 EFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQLIQ 373 (383)
T ss_dssp HHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTSCS
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhh
Confidence 677778888888 88888888765 55565445677888899999999999999998887765543
No 134
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.06 E-value=0.026 Score=42.23 Aligned_cols=96 Identities=9% Similarity=0.070 Sum_probs=74.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhhhCCCCCCCh--hhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCh---HHHHHHHH
Q 047178 149 QLIRALDMDHRAEEAHKFWEKRIGIDLHSVPW--QLCKSMIAIYYRNNMLERLIKLFKGLEAFDRKPPE---KSIVQRVA 223 (287)
Q Consensus 149 aLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~--~tyNsmIsgY~k~G~~eeA~~Lf~eM~~~Gi~PD~---~~Ty~sLI 223 (287)
.+-..+.+.|+.++|...|++....+-. .+. ..|..+-..|.+.|++++|...|....... |+. ...+..+.
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~la 83 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY--PTHDKAAGGLLKLG 83 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTSTTHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC--CCCcccHHHHHHHH
Confidence 3455678899999999999998875421 121 356678888999999999999999988753 442 24466777
Q ss_pred HHHHhcCCHHHHHHHHHHHhHHHh
Q 047178 224 DAYEVLGLLEEKERVLEKYKDLFT 247 (287)
Q Consensus 224 ~a~~k~G~leeA~~ll~~m~~l~~ 247 (287)
.+|...|+.++|...+++....+-
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~~~p 107 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVATQYP 107 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCC
Confidence 889999999999999998877654
No 135
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=97.05 E-value=0.0087 Score=47.80 Aligned_cols=111 Identities=7% Similarity=0.096 Sum_probs=83.9
Q ss_pred HHHHHHHccchhhHHHHHHHHHHCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHcC
Q 047178 115 ALLALEKEQQWHRVVQVIKWMLSKGQGSTMGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNN 194 (287)
Q Consensus 115 ai~~L~k~~~~~~A~qv~~~M~~~G~~pd~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~G 194 (287)
+-..+.+.|++++|++.|+..++.. +-+..+|..|=..|.+.|+.++|...|++..+.+- .....|..+-..|.+.|
T Consensus 37 la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~~ 113 (150)
T 4ga2_A 37 FAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDKAVECYRRSVELNP--TQKDLVLKIAELLCKND 113 (150)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcC
Confidence 4455788999999999999988752 23677899999999999999999999999887542 23346888889999999
Q ss_pred CHhHHHHHH-HHHHHCCCCCChHHHHHHHHHHHHhcC
Q 047178 195 MLERLIKLF-KGLEAFDRKPPEKSIVQRVADAYEVLG 230 (287)
Q Consensus 195 ~~eeA~~Lf-~eM~~~Gi~PD~~~Ty~sLI~a~~k~G 230 (287)
++++|.+.| +...+ +.|+...+|...-..+...|
T Consensus 114 ~~~~aa~~~~~~al~--l~P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 114 VTDGRAKYWVERAAK--LFPGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp SSSSHHHHHHHHHHH--HSTTCHHHHHHHHHHHHTCC
T ss_pred ChHHHHHHHHHHHHH--hCcCCHHHHHHHHHHHHHhC
Confidence 998877654 65554 45765566665555555554
No 136
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=97.03 E-value=0.013 Score=46.77 Aligned_cols=93 Identities=5% Similarity=-0.128 Sum_probs=74.6
Q ss_pred HHHHHHHHccchhhHHHHHHHHHHCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHc
Q 047178 114 KALLALEKEQQWHRVVQVIKWMLSKGQGSTMGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRN 193 (287)
Q Consensus 114 ~ai~~L~k~~~~~~A~qv~~~M~~~G~~pd~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~ 193 (287)
..-..+...|++++|+..|....... ..+...|..+=.+|.+.|+.++|...|++....+- .....|..+-.+|...
T Consensus 26 ~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p--~~~~~~~~lg~~~~~~ 102 (148)
T 2vgx_A 26 SLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI--XEPRFPFHAAECLLQX 102 (148)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST--TCTHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC--CCchHHHHHHHHHHHc
Confidence 34445778899999999999887642 23667788888899999999999999999876542 2234577788899999
Q ss_pred CCHhHHHHHHHHHHHC
Q 047178 194 NMLERLIKLFKGLEAF 209 (287)
Q Consensus 194 G~~eeA~~Lf~eM~~~ 209 (287)
|++++|.+.|....+.
T Consensus 103 g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 103 GELAEAESGLFLAQEL 118 (148)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999999987654
No 137
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=96.94 E-value=0.018 Score=47.21 Aligned_cols=99 Identities=14% Similarity=0.098 Sum_probs=77.9
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCC--------------hhhHHHHHHHHHHcCCHhHHHHHHHHHHHCC
Q 047178 145 GTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVP--------------WQLCKSMIAIYYRNNMLERLIKLFKGLEAFD 210 (287)
Q Consensus 145 ~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~--------------~~tyNsmIsgY~k~G~~eeA~~Lf~eM~~~G 210 (287)
..+..+=..|.+.|++++|...|.+.....-..++ ...|..+-.+|.+.|++++|+..|......
T Consensus 39 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~- 117 (198)
T 2fbn_A 39 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI- 117 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-
Confidence 34566667788999999999999998764321110 146777888999999999999999998875
Q ss_pred CCCChHHHHHHHHHHHHhcCCHHHHHHHHHHHhHH
Q 047178 211 RKPPEKSIVQRVADAYEVLGLLEEKERVLEKYKDL 245 (287)
Q Consensus 211 i~PD~~~Ty~sLI~a~~k~G~leeA~~ll~~m~~l 245 (287)
.|+....|..+-.+|...|++++|...+.+...+
T Consensus 118 -~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 151 (198)
T 2fbn_A 118 -DKNNVKALYKLGVANMYFGFLEEAKENLYKAASL 151 (198)
T ss_dssp -STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred -CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 4654567888888999999999999999876554
No 138
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=96.94 E-value=0.0094 Score=53.07 Aligned_cols=128 Identities=9% Similarity=0.020 Sum_probs=57.4
Q ss_pred HHHHHHHHccchhhHHHHHHHHHHC----CCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHhhhCC--CCCCC--hhhHH
Q 047178 114 KALLALEKEQQWHRVVQVIKWMLSK----GQGS-TMGTCGQLIRALDMDHRAEEAHKFWEKRIGID--LHSVP--WQLCK 184 (287)
Q Consensus 114 ~ai~~L~k~~~~~~A~qv~~~M~~~----G~~p-d~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g--~~sv~--~~tyN 184 (287)
.+-..+.+.|++++|++.+..-++. |-.. -..+|+.|=..|.. |+.++|...|++-.... ..... ..+|+
T Consensus 81 ~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~ 159 (307)
T 2ifu_A 81 QAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIG 159 (307)
T ss_dssp HHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHH
Confidence 3334445555666665555543321 1100 02234444445555 66666666665543210 00000 12355
Q ss_pred HHHHHHHHcCCHhHHHHHHHHHHH----CCCCCChHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 047178 185 SMIAIYYRNNMLERLIKLFKGLEA----FDRKPPEKSIVQRVADAYEVLGLLEEKERVLEKY 242 (287)
Q Consensus 185 smIsgY~k~G~~eeA~~Lf~eM~~----~Gi~PD~~~Ty~sLI~a~~k~G~leeA~~ll~~m 242 (287)
.+-..|.+.|++++|++.|.+... .+..+....++..+...+...|++++|...+++.
T Consensus 160 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~a 221 (307)
T 2ifu_A 160 KASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRES 221 (307)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 555556666666666666655543 2222221113333334444456666666555554
No 139
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=96.92 E-value=0.008 Score=55.08 Aligned_cols=126 Identities=7% Similarity=-0.108 Sum_probs=91.2
Q ss_pred HHHHHHHccchhhHHHHHHHHHHCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCC---hhhHHHHHHHHH
Q 047178 115 ALLALEKEQQWHRVVQVIKWMLSKGQGSTMGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVP---WQLCKSMIAIYY 191 (287)
Q Consensus 115 ai~~L~k~~~~~~A~qv~~~M~~~G~~pd~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~---~~tyNsmIsgY~ 191 (287)
....|...|++++|.++|..+...+ |+....-.+-..|.+.|++++|+..|++..... .+ ...+..+=.+|.
T Consensus 108 yA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~---d~~~~~~a~~~LG~al~ 182 (282)
T 4f3v_A 108 FAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP---DKFLAGAAGVAHGVAAA 182 (282)
T ss_dssp HHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS---CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC---CcccHHHHHHHHHHHHH
Confidence 4456788999999999998876533 544465666668999999999999998664421 11 123455666899
Q ss_pred HcCCHhHHHHHHHHHHHCCCCCC-hHHHHHHHHHHHHhcCCHHHHHHHHHHHhHH
Q 047178 192 RNNMLERLIKLFKGLEAFDRKPP-EKSIVQRVADAYEVLGLLEEKERVLEKYKDL 245 (287)
Q Consensus 192 k~G~~eeA~~Lf~eM~~~Gi~PD-~~~Ty~sLI~a~~k~G~leeA~~ll~~m~~l 245 (287)
+.|++++|+..|++-......|. ..-.....-.++.+.|+.++|..+|+++...
T Consensus 183 ~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 183 NLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 99999999999999875444254 1112233445788999999999999987664
No 140
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=96.90 E-value=0.029 Score=52.06 Aligned_cols=131 Identities=8% Similarity=0.003 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHHHccchhhHHHHHHHHHHCCCCC-----ChhHHHHHHHH--HHHcC--CHHHHHHHHHHhhhCCCCCCC
Q 047178 109 VGSLKKALLALEKEQQWHRVVQVIKWMLSKGQGS-----TMGTCGQLIRA--LDMDH--RAEEAHKFWEKRIGIDLHSVP 179 (287)
Q Consensus 109 ~~s~~~ai~~L~k~~~~~~A~qv~~~M~~~G~~p-----d~~TYnaLI~~--y~K~G--~leeA~~lF~eM~~~g~~sv~ 179 (287)
.-.+..++..+.+.|+.+.|.+.++.|.+. .| +-.+..-|..+ ....| +..+|..+|+++.... ++
T Consensus 136 lea~~l~vqi~L~~~r~d~A~k~l~~~~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~---p~ 210 (310)
T 3mv2_B 136 TELLLLAIEVALLNNNVSTASTIFDNYTNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF---PT 210 (310)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS---CS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC---CC
Confidence 344556778899999999999999999774 45 23444555555 33334 9999999999997653 33
Q ss_pred hhhHHHHHHHHHHcCCHhHHHHHHHHHHHC-----C---CCCChHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHH
Q 047178 180 WQLCKSMIAIYYRNNMLERLIKLFKGLEAF-----D---RKPPEKSIVQRVADAYEVLGLLEEKERVLEKYKDLF 246 (287)
Q Consensus 180 ~~tyNsmIsgY~k~G~~eeA~~Lf~eM~~~-----G---i~PD~~~Ty~sLI~a~~k~G~leeA~~ll~~m~~l~ 246 (287)
|.+-..+++++.+.|++++|.+.++.+.+. . ..|+...++.-+|..+...|+ +|.+++.+...+.
T Consensus 211 ~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 211 WKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred cccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 333455566899999999999999977653 1 136665666445555556786 7787777655443
No 141
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=96.85 E-value=0.0027 Score=61.25 Aligned_cols=117 Identities=11% Similarity=-0.028 Sum_probs=85.9
Q ss_pred HHccchhhHHHHHHHHHHCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHcCCHhHH
Q 047178 120 EKEQQWHRVVQVIKWMLSKGQGSTMGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNNMLERL 199 (287)
Q Consensus 120 ~k~~~~~~A~qv~~~M~~~G~~pd~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~G~~eeA 199 (287)
.+.|++++|++.+...++. ...+..+|..+-.+|.+.|+.++|.+.|++..+.+- .....|..+-.+|.+.|++++|
T Consensus 17 ~~~g~~~~A~~~~~~Al~~-~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p--~~~~~~~~lg~~~~~~g~~~eA 93 (477)
T 1wao_1 17 FKAKDYENAIKFYSQAIEL-NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK--KYIKGYYRRAASNMALGKFRAA 93 (477)
T ss_dssp TTTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT--TCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHhCCHHHHHHHHHHHHHh-CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHH
Confidence 4667888888888887764 223577899999999999999999999999987642 2335688888999999999999
Q ss_pred HHHHHHHHHCCCCCChHHHHHHHHHH--HHhcCCHHHHHHHHHH
Q 047178 200 IKLFKGLEAFDRKPPEKSIVQRVADA--YEVLGLLEEKERVLEK 241 (287)
Q Consensus 200 ~~Lf~eM~~~Gi~PD~~~Ty~sLI~a--~~k~G~leeA~~ll~~ 241 (287)
.+.|++..+. .|+....+..+-.+ +.+.|++++|.+++++
T Consensus 94 ~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 94 LRDYETVVKV--KPHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHHHHHHHHH--STTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 9999998775 34332334444444 7778888888888775
No 142
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=96.84 E-value=0.0053 Score=61.68 Aligned_cols=127 Identities=11% Similarity=-0.069 Sum_probs=101.7
Q ss_pred HHHHHHHHHHHccchhhHHHHHHHHHHCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHH
Q 047178 111 SLKKALLALEKEQQWHRVVQVIKWMLSKGQGSTMGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIY 190 (287)
Q Consensus 111 s~~~ai~~L~k~~~~~~A~qv~~~M~~~G~~pd~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY 190 (287)
.+...-..+...|++++|++.++..++.. ..+...|..+=..|.+.|+.++|.+.|++....+- .....|..+=..|
T Consensus 435 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P--~~~~~~~~lg~~~ 511 (681)
T 2pzi_A 435 LPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFP--GELAPKLALAATA 511 (681)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST--TCSHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CChHHHHHHHHHH
Confidence 34445556778899999999999987642 23566788888899999999999999999877542 1234688888899
Q ss_pred HHcCCHhHHHHHHHHHHHCCCCCChHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 047178 191 YRNNMLERLIKLFKGLEAFDRKPPEKSIVQRVADAYEVLGLLEEKERVLEKYK 243 (287)
Q Consensus 191 ~k~G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~G~leeA~~ll~~m~ 243 (287)
.+.|++++ ++.|++..+. .|+....|..+-.+|...|++++|...+++..
T Consensus 512 ~~~g~~~~-~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 561 (681)
T 2pzi_A 512 ELAGNTDE-HKFYQTVWST--NDGVISAAFGLARARSAEGDRVGAVRTLDEVP 561 (681)
T ss_dssp HHHTCCCT-TCHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred HHcCChHH-HHHHHHHHHh--CCchHHHHHHHHHHHHHcCCHHHHHHHHHhhc
Confidence 99999999 9999998764 46555778888889999999999999998644
No 143
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=96.82 E-value=0.056 Score=45.49 Aligned_cols=129 Identities=11% Similarity=0.037 Sum_probs=89.0
Q ss_pred HHHHHHHHHHHccchhhHHHHHHHHHHCCCC-CCh-hHHHHHHHHHHH------------------cCCHHHHHHHHHHh
Q 047178 111 SLKKALLALEKEQQWHRVVQVIKWMLSKGQG-STM-GTCGQLIRALDM------------------DHRAEEAHKFWEKR 170 (287)
Q Consensus 111 s~~~ai~~L~k~~~~~~A~qv~~~M~~~G~~-pd~-~TYnaLI~~y~K------------------~G~leeA~~lF~eM 170 (287)
.+..+-..+.+.|++++|+..|+..++..-. +.. .++--+-.+|.+ .|+.++|...|++.
T Consensus 43 a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 122 (225)
T 2yhc_A 43 VQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKL 122 (225)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHH
Confidence 3445566788899999999999998875321 111 123323333333 57899999999999
Q ss_pred hhCCCCCCChhhHH-----------------HHHHHHHHcCCHhHHHHHHHHHHHCCCCCChH---HHHHHHHHHHHhcC
Q 047178 171 IGIDLHSVPWQLCK-----------------SMIAIYYRNNMLERLIKLFKGLEAFDRKPPEK---SIVQRVADAYEVLG 230 (287)
Q Consensus 171 ~~~g~~sv~~~tyN-----------------smIsgY~k~G~~eeA~~Lf~eM~~~Gi~PD~~---~Ty~sLI~a~~k~G 230 (287)
....-. ....+. .+-..|.+.|++++|+..|+++.+.- |+.. -.+..+..+|.+.|
T Consensus 123 l~~~P~--~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~l~~~~~~~g 198 (225)
T 2yhc_A 123 VRGYPN--SQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDY--PDTQATRDALPLMENAYRQMQ 198 (225)
T ss_dssp HTTCTT--CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTSHHHHHHHHHHHHHHHHTT
T ss_pred HHHCcC--ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHC--cCCCccHHHHHHHHHHHHHcC
Confidence 876421 112222 23456889999999999999998752 4421 23667788999999
Q ss_pred CHHHHHHHHHHHh
Q 047178 231 LLEEKERVLEKYK 243 (287)
Q Consensus 231 ~leeA~~ll~~m~ 243 (287)
+.++|...++...
T Consensus 199 ~~~~A~~~~~~l~ 211 (225)
T 2yhc_A 199 MNAQAEKVAKIIA 211 (225)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHH
Confidence 9999999887644
No 144
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=96.82 E-value=0.011 Score=46.97 Aligned_cols=94 Identities=7% Similarity=-0.071 Sum_probs=56.3
Q ss_pred HHHHHHHHccchhhHHHHHHHHHHC-------CC---------CC-ChhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCC
Q 047178 114 KALLALEKEQQWHRVVQVIKWMLSK-------GQ---------GS-TMGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLH 176 (287)
Q Consensus 114 ~ai~~L~k~~~~~~A~qv~~~M~~~-------G~---------~p-d~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~ 176 (287)
..=..+.+.|++.+|+..|...++. .- .| +...|.-+-.+|.+.|+.++|...|++....+-
T Consensus 16 ~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p- 94 (162)
T 3rkv_A 16 QKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREE- 94 (162)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST-
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCC-
Confidence 3334566677777777777765543 00 11 224566666667777777777777777665431
Q ss_pred CCChhhHHHHHHHHHHcCCHhHHHHHHHHHHHC
Q 047178 177 SVPWQLCKSMIAIYYRNNMLERLIKLFKGLEAF 209 (287)
Q Consensus 177 sv~~~tyNsmIsgY~k~G~~eeA~~Lf~eM~~~ 209 (287)
.....|..+=.+|...|++++|...|......
T Consensus 95 -~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 95 -TNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp -TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -cchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 22234566666777777777777777665543
No 145
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=96.82 E-value=0.024 Score=51.37 Aligned_cols=135 Identities=12% Similarity=0.022 Sum_probs=94.5
Q ss_pred HHHHHHHHccchhhHHHHHHHHHHC----CCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCC--CCCC-hhhHHHH
Q 047178 114 KALLALEKEQQWHRVVQVIKWMLSK----GQGSTMGTCGQLIRALDMDHRAEEAHKFWEKRIGIDL--HSVP-WQLCKSM 186 (287)
Q Consensus 114 ~ai~~L~k~~~~~~A~qv~~~M~~~----G~~pd~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~--~sv~-~~tyNsm 186 (287)
.+-..+...|++++|++.+....+. +......++..|-..|.+.|+.++|...|++.....- ..+. ...++.+
T Consensus 227 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 306 (378)
T 3q15_A 227 NIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFL 306 (378)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3444566788899998888876651 2223356788888889999999999999998764211 0011 1346666
Q ss_pred HHHHHHcCC---HhHHHHHHHHHHHCCCCCChHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHHhhhhc
Q 047178 187 IAIYYRNNM---LERLIKLFKGLEAFDRKPPEKSIVQRVADAYEVLGLLEEKERVLEKYKDLFTEKEK 251 (287)
Q Consensus 187 IsgY~k~G~---~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~G~leeA~~ll~~m~~l~~~~~~ 251 (287)
-..|...|. +++|+..|.+ .+..|+....+..+-..|...|+.++|...+++...+......
T Consensus 307 ~~ly~~~~~~~~~~~al~~~~~---~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~ 371 (378)
T 3q15_A 307 QAVYKETVDERKIHDLLSYFEK---KNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQEDILK 371 (378)
T ss_dssp HHHHSSSCCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCcHHHHHHHHHHHHh---CCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhc
Confidence 667777787 7888888776 4445554455677888899999999999999988777665443
No 146
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=96.82 E-value=0.012 Score=49.30 Aligned_cols=109 Identities=7% Similarity=0.015 Sum_probs=85.8
Q ss_pred HHHHHccchhhHHHHHHHHHHCCCCCC-hhHHHH----------------HHHHHHHcCCHHHHHHHHHHhhhCCCCCCC
Q 047178 117 LALEKEQQWHRVVQVIKWMLSKGQGST-MGTCGQ----------------LIRALDMDHRAEEAHKFWEKRIGIDLHSVP 179 (287)
Q Consensus 117 ~~L~k~~~~~~A~qv~~~M~~~G~~pd-~~TYna----------------LI~~y~K~G~leeA~~lF~eM~~~g~~sv~ 179 (287)
..+...|++++|+..|...++. .|+ ...|.. |-..|.+.|+.++|...|++....+- ..
T Consensus 12 ~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--~~ 87 (208)
T 3urz_A 12 SAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAP--NN 87 (208)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TC
T ss_pred HHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC--CC
Confidence 3466789999999999998764 343 345555 78889999999999999999987652 23
Q ss_pred hhhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChHHHHHHHHHHHHhcCC
Q 047178 180 WQLCKSMIAIYYRNNMLERLIKLFKGLEAFDRKPPEKSIVQRVADAYEVLGL 231 (287)
Q Consensus 180 ~~tyNsmIsgY~k~G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~G~ 231 (287)
...|..+-..|...|++++|+..|++..+. .|+....+..+-..|...|.
T Consensus 88 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~~~ 137 (208)
T 3urz_A 88 VDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYYLTAE 137 (208)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHhH
Confidence 457888999999999999999999998874 57665667777777765554
No 147
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.79 E-value=0.014 Score=55.94 Aligned_cols=99 Identities=13% Similarity=0.097 Sum_probs=71.1
Q ss_pred HHHHHHcCCHHHHHHHHHHhhhCC--CCCCC----hhhHHHHHHHHHHcCCHhHHHHHHHHHHH-----C-CCCCChHHH
Q 047178 151 IRALDMDHRAEEAHKFWEKRIGID--LHSVP----WQLCKSMIAIYYRNNMLERLIKLFKGLEA-----F-DRKPPEKSI 218 (287)
Q Consensus 151 I~~y~K~G~leeA~~lF~eM~~~g--~~sv~----~~tyNsmIsgY~k~G~~eeA~~Lf~eM~~-----~-Gi~PD~~~T 218 (287)
|..+.+.|+.++|+.++++..+.. +-.+. ..++|.|...|...|++++|..++.+... . .-.|+...+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 555667788888888888776421 11111 13688888888888888888888887653 2 345776777
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhHHHhhh
Q 047178 219 VQRVADAYEVLGLLEEKERVLEKYKDLFTEK 249 (287)
Q Consensus 219 y~sLI~a~~k~G~leeA~~ll~~m~~l~~~~ 249 (287)
|+.|-..|...|++++|+.++++...++...
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~ 404 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRVT 404 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Confidence 8888888888888888888888877776654
No 148
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=96.78 E-value=0.083 Score=47.18 Aligned_cols=136 Identities=8% Similarity=-0.020 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHccchhhHHHHHHHHHHCCCCCCh-hHHH-----HHHHHHHHcCCHHHHHHHHHHhhhCCCCCCCh---h
Q 047178 111 SLKKALLALEKEQQWHRVVQVIKWMLSKGQGSTM-GTCG-----QLIRALDMDHRAEEAHKFWEKRIGIDLHSVPW---Q 181 (287)
Q Consensus 111 s~~~ai~~L~k~~~~~~A~qv~~~M~~~G~~pd~-~TYn-----aLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~---~ 181 (287)
.+..+-..+...|++++|...++......-.++. ..+. .++..+...|+.++|..++++....... .+. .
T Consensus 176 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~ 254 (373)
T 1hz4_A 176 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFA-NNHFLQG 254 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCT-TCGGGHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCC-cchhhHH
Confidence 3444555677889999999999887653222211 1222 3344577999999999999998754321 111 2
Q ss_pred hHHHHHHHHHHcCCHhHHHHHHHHHHH----CCCCCChHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHHh
Q 047178 182 LCKSMIAIYYRNNMLERLIKLFKGLEA----FDRKPPEKSIVQRVADAYEVLGLLEEKERVLEKYKDLFT 247 (287)
Q Consensus 182 tyNsmIsgY~k~G~~eeA~~Lf~eM~~----~Gi~PD~~~Ty~sLI~a~~k~G~leeA~~ll~~m~~l~~ 247 (287)
.+..+...|...|++++|..++++... .|..++...++..+-.+|...|+.++|...+.+...+..
T Consensus 255 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~ 324 (373)
T 1hz4_A 255 QWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN 324 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc
Confidence 467788899999999999999998753 343334222556667788899999999999988776654
No 149
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=96.78 E-value=0.0071 Score=49.03 Aligned_cols=124 Identities=16% Similarity=0.025 Sum_probs=88.1
Q ss_pred HHHHHHHccchhhHHHHHHHHHHCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHH--HHH
Q 047178 115 ALLALEKEQQWHRVVQVIKWMLSKGQGSTMGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAI--YYR 192 (287)
Q Consensus 115 ai~~L~k~~~~~~A~qv~~~M~~~G~~pd~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsg--Y~k 192 (287)
.-..+...|++++|+..++..++.. +.+...+..+-..|.+.|+.++|...|++....+ ++. .+..+... +.+
T Consensus 12 ~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~---p~~-~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 12 QVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEY---QDN-SYKSLIAKLELHQ 86 (176)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG---CCH-HHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc---CCh-HHHHHHHHHHHHh
Confidence 3445677899999999887755421 2356678889999999999999999999886543 111 22222221 223
Q ss_pred cCCHhHHHHHHHHHHHCCCCCChHHHHHHHHHHHHhcCCHHHHHHHHHHHhHH
Q 047178 193 NNMLERLIKLFKGLEAFDRKPPEKSIVQRVADAYEVLGLLEEKERVLEKYKDL 245 (287)
Q Consensus 193 ~G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~G~leeA~~ll~~m~~l 245 (287)
.+...+|+..|++..+. .|+....+..+-..|...|++++|...+++...+
T Consensus 87 ~~~~~~a~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 137 (176)
T 2r5s_A 87 QAAESPELKRLEQELAA--NPDNFELACELAVQYNQVGRDEEALELLWNILKV 137 (176)
T ss_dssp HHTSCHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred hcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHh
Confidence 33445678888887764 4665567788888999999999999999876544
No 150
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=96.78 E-value=0.027 Score=43.65 Aligned_cols=51 Identities=12% Similarity=0.079 Sum_probs=22.6
Q ss_pred HHHccchhhHHHHHHHHHHCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHh
Q 047178 119 LEKEQQWHRVVQVIKWMLSKGQGSTMGTCGQLIRALDMDHRAEEAHKFWEKR 170 (287)
Q Consensus 119 L~k~~~~~~A~qv~~~M~~~G~~pd~~TYnaLI~~y~K~G~leeA~~lF~eM 170 (287)
+.+.|++++|++.|...++.. +.+..+|+-+=.+|.+.|+.++|.+.|++.
T Consensus 18 ~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~a 68 (127)
T 4gcn_A 18 AYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKA 68 (127)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHH
Confidence 344444555555544444321 112334444444444555555555544443
No 151
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=96.75 E-value=0.013 Score=53.36 Aligned_cols=99 Identities=8% Similarity=-0.050 Sum_probs=81.0
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCC--------------hhhHHHHHHHHHHcCCHhHHHHHHHHHHHC
Q 047178 144 MGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVP--------------WQLCKSMIAIYYRNNMLERLIKLFKGLEAF 209 (287)
Q Consensus 144 ~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~--------------~~tyNsmIsgY~k~G~~eeA~~Lf~eM~~~ 209 (287)
...|..+=..|.+.|++++|...|++.....-. .+ ...|+.+-.+|.+.|++++|+..|.+..+.
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~-~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEY-ESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc-cccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 456788888999999999999999998764421 11 256888999999999999999999998875
Q ss_pred CCCCChHHHHHHHHHHHHhcCCHHHHHHHHHHHhHH
Q 047178 210 DRKPPEKSIVQRVADAYEVLGLLEEKERVLEKYKDL 245 (287)
Q Consensus 210 Gi~PD~~~Ty~sLI~a~~k~G~leeA~~ll~~m~~l 245 (287)
.|+....|..+-.+|...|++++|...|++...+
T Consensus 226 --~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 259 (336)
T 1p5q_A 226 --DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL 259 (336)
T ss_dssp --CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred --CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 4655677888889999999999999998865443
No 152
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=96.73 E-value=0.011 Score=52.61 Aligned_cols=134 Identities=14% Similarity=0.069 Sum_probs=95.1
Q ss_pred HHHHHHHHHHccchhhHHHHHHHHHHC----CCCCC-hhHHHHHHHHHHHcCCHHHHHHHHHHhhhC--CCCCCC--hhh
Q 047178 112 LKKALLALEKEQQWHRVVQVIKWMLSK----GQGST-MGTCGQLIRALDMDHRAEEAHKFWEKRIGI--DLHSVP--WQL 182 (287)
Q Consensus 112 ~~~ai~~L~k~~~~~~A~qv~~~M~~~----G~~pd-~~TYnaLI~~y~K~G~leeA~~lF~eM~~~--g~~sv~--~~t 182 (287)
+..+...+...+++++|++.+.+..+. |-.+. ..+|+-+-..|.+.|+.++|...|++-... ....+. ..+
T Consensus 39 ~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~ 118 (307)
T 2ifu_A 39 YAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMA 118 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 445556677788899998888776542 21111 347888889999999999999999976431 111011 135
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHH----CCCCCChHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHH
Q 047178 183 CKSMIAIYYRNNMLERLIKLFKGLEA----FDRKPPEKSIVQRVADAYEVLGLLEEKERVLEKYKDLF 246 (287)
Q Consensus 183 yNsmIsgY~k~G~~eeA~~Lf~eM~~----~Gi~PD~~~Ty~sLI~a~~k~G~leeA~~ll~~m~~l~ 246 (287)
|+.|=..|.+ |++++|++.|++-.. .|-.+....++..+-..|...|++++|...+++...+.
T Consensus 119 ~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 185 (307)
T 2ifu_A 119 LDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMY 185 (307)
T ss_dssp HHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 7778788888 999999999987654 22222123457788889999999999999998877654
No 153
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=96.69 E-value=0.026 Score=53.72 Aligned_cols=119 Identities=13% Similarity=-0.000 Sum_probs=92.8
Q ss_pred HHHHHHHHccchhhHHHHHHHHHHCCCCCC----------------hhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCC
Q 047178 114 KALLALEKEQQWHRVVQVIKWMLSKGQGST----------------MGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHS 177 (287)
Q Consensus 114 ~ai~~L~k~~~~~~A~qv~~~M~~~G~~pd----------------~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~s 177 (287)
..-..+.+.+++.+|+..|...++.. |+ ...|+-+-.+|.+.|+.++|...|++....+-
T Consensus 273 ~~G~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p-- 348 (457)
T 1kt0_A 273 EKGTVYFKGGKYMQAVIQYGKIVSWL--EMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDS-- 348 (457)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHH--TTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST--
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHh--cccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC--
Confidence 33445778899999999998877632 32 47888899999999999999999999887542
Q ss_pred CChhhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChHHHHHHHHHHHHhcCCHHHHHHH
Q 047178 178 VPWQLCKSMIAIYYRNNMLERLIKLFKGLEAFDRKPPEKSIVQRVADAYEVLGLLEEKERV 238 (287)
Q Consensus 178 v~~~tyNsmIsgY~k~G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~G~leeA~~l 238 (287)
.....|..+=.+|.+.|++++|+..|.+..+. .|+....+..+-..+.+.|+.+++.+-
T Consensus 349 ~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~~~~~~~~~~a~~~ 407 (457)
T 1kt0_A 349 ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--NPQNKAARLQISMCQKKAKEHNERDRR 407 (457)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--C----CHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23346777889999999999999999998764 566556788888889899988887753
No 154
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=96.65 E-value=0.028 Score=49.66 Aligned_cols=129 Identities=9% Similarity=-0.032 Sum_probs=94.7
Q ss_pred HHHHHHHHHHHccchhhHHHHHHHHHHCCCCCChhHHHHH-HHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHH
Q 047178 111 SLKKALLALEKEQQWHRVVQVIKWMLSKGQGSTMGTCGQL-IRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAI 189 (287)
Q Consensus 111 s~~~ai~~L~k~~~~~~A~qv~~~M~~~G~~pd~~TYnaL-I~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsg 189 (287)
.+..+-..+...|++++|..+++..... .|+....... ...+.+.|+.++|...|++....+- .+...+..+-..
T Consensus 153 a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P--~~~~~~~~la~~ 228 (287)
T 3qou_A 153 IGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENP--EDAALATQLALQ 228 (287)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCT--TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCC--ccHHHHHHHHHH
Confidence 3444556678899999999999876543 3554433222 2336778888899999999877542 233467788899
Q ss_pred HHHcCCHhHHHHHHHHHHHCCCCCChHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 047178 190 YYRNNMLERLIKLFKGLEAFDRKPPEKSIVQRVADAYEVLGLLEEKERVLEKYK 243 (287)
Q Consensus 190 Y~k~G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~G~leeA~~ll~~m~ 243 (287)
|.+.|++++|+..|.+.....-..+....+..+...|...|+.++|...+.+-.
T Consensus 229 l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 229 LHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 999999999999999998864322113568899999999999999988876543
No 155
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=96.63 E-value=0.018 Score=44.36 Aligned_cols=91 Identities=7% Similarity=-0.090 Sum_probs=73.0
Q ss_pred HHHHHHccchhhHHHHHHHHHHCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHcCC
Q 047178 116 LLALEKEQQWHRVVQVIKWMLSKGQGSTMGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNNM 195 (287)
Q Consensus 116 i~~L~k~~~~~~A~qv~~~M~~~G~~pd~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~G~ 195 (287)
-..+.+.|++++|+..++..++.. ..+...|..|=..|.+.|+.++|...|++....+- .....|..+-..|.+.|+
T Consensus 24 g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P--~~~~~~~~la~~~~~~g~ 100 (121)
T 1hxi_A 24 GLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP--KDIAVHAALAVSHTNEHN 100 (121)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCC
Confidence 345668899999999999987742 23567788888889999999999999999887542 223467888899999999
Q ss_pred HhHHHHHHHHHHHC
Q 047178 196 LERLIKLFKGLEAF 209 (287)
Q Consensus 196 ~eeA~~Lf~eM~~~ 209 (287)
+++|+..|++..+.
T Consensus 101 ~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 101 ANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999988753
No 156
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=96.60 E-value=0.024 Score=50.75 Aligned_cols=130 Identities=12% Similarity=0.065 Sum_probs=93.0
Q ss_pred HHHHHccchhhHHHHHHHHHHCCC-CCC----hhHHHHHHHHHHHcCCHHHHHHHHHHhhhC----CCCCCCh--hhHHH
Q 047178 117 LALEKEQQWHRVVQVIKWMLSKGQ-GST----MGTCGQLIRALDMDHRAEEAHKFWEKRIGI----DLHSVPW--QLCKS 185 (287)
Q Consensus 117 ~~L~k~~~~~~A~qv~~~M~~~G~-~pd----~~TYnaLI~~y~K~G~leeA~~lF~eM~~~----g~~sv~~--~tyNs 185 (287)
..+...|++++|.+.+.......- ..+ ..+++.+-..|...|++++|...|++.... +....+. ..++.
T Consensus 61 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 140 (373)
T 1hz4_A 61 EVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRI 140 (373)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHH
T ss_pred HHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHH
Confidence 446678899999988887664211 112 223566777788999999999999987642 2110122 35666
Q ss_pred HHHHHHHcCCHhHHHHHHHHHHHCCCCCC-----hHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHHhh
Q 047178 186 MIAIYYRNNMLERLIKLFKGLEAFDRKPP-----EKSIVQRVADAYEVLGLLEEKERVLEKYKDLFTE 248 (287)
Q Consensus 186 mIsgY~k~G~~eeA~~Lf~eM~~~Gi~PD-----~~~Ty~sLI~a~~k~G~leeA~~ll~~m~~l~~~ 248 (287)
+-..|...|++++|...|.+-.. +.|+ ...+|..+...+...|++++|...+++...+...
T Consensus 141 la~~~~~~g~~~~A~~~~~~al~--~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~ 206 (373)
T 1hz4_A 141 RAQLLWAWARLDEAEASARSGIE--VLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGN 206 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH--HTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcCHHHHHHHHHHHHH--HhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Confidence 77788999999999999988764 4663 1245777788889999999999999998887644
No 157
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=96.59 E-value=0.02 Score=43.33 Aligned_cols=103 Identities=14% Similarity=0.049 Sum_probs=76.8
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHhhhCC--CCCCCh--hhHHHHHHHHHHcCCHhHHHHHHHHHHHC----CCCCChH
Q 047178 145 GTCGQLIRALDMDHRAEEAHKFWEKRIGID--LHSVPW--QLCKSMIAIYYRNNMLERLIKLFKGLEAF----DRKPPEK 216 (287)
Q Consensus 145 ~TYnaLI~~y~K~G~leeA~~lF~eM~~~g--~~sv~~--~tyNsmIsgY~k~G~~eeA~~Lf~eM~~~----Gi~PD~~ 216 (287)
.+|..+-..|...|++++|...|++..... ...... .+|+.+-..|...|++++|.+.|.+.... +-.+...
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 467788888999999999999999876421 000111 36888999999999999999999987542 2222223
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhHHHh
Q 047178 217 SIVQRVADAYEVLGLLEEKERVLEKYKDLFT 247 (287)
Q Consensus 217 ~Ty~sLI~a~~k~G~leeA~~ll~~m~~l~~ 247 (287)
..+..+-..|...|++++|...+++...+..
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 120 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ 120 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 4567777889999999999999988776654
No 158
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=96.53 E-value=0.015 Score=43.45 Aligned_cols=79 Identities=11% Similarity=-0.016 Sum_probs=54.1
Q ss_pred hHHHHHHHHHHCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHcCCHhHHHHHHHHH
Q 047178 127 RVVQVIKWMLSKGQGSTMGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNNMLERLIKLFKGL 206 (287)
Q Consensus 127 ~A~qv~~~M~~~G~~pd~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~G~~eeA~~Lf~eM 206 (287)
.+++.+....+.. ..+...|..|-..|...|+.++|...|++....+- .....|..+-..|.+.|++++|...|.+.
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDP--TYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC--CcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4566666665532 23556677777788888888888888887766432 12235677777788888888888888766
Q ss_pred HH
Q 047178 207 EA 208 (287)
Q Consensus 207 ~~ 208 (287)
..
T Consensus 80 l~ 81 (115)
T 2kat_A 80 LA 81 (115)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 159
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=96.51 E-value=0.0013 Score=48.03 Aligned_cols=68 Identities=7% Similarity=-0.068 Sum_probs=52.5
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCC
Q 047178 143 TMGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNNMLERLIKLFKGLEAFDRKPP 214 (287)
Q Consensus 143 d~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~G~~eeA~~Lf~eM~~~Gi~PD 214 (287)
+...|..+-..|.+.|+.++|.+.|++....+- .....|..+-.+|.+.|++++|++.|.+.... .|+
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~ 70 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQP--QNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY--TST 70 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CSS
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCC
Confidence 345677777888899999999999998876542 23346777888899999999999999988764 454
No 160
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=96.50 E-value=0.056 Score=43.10 Aligned_cols=122 Identities=11% Similarity=0.065 Sum_probs=91.6
Q ss_pred HccchhhHHHHHHHHHHCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHH-HHHcCCH--h
Q 047178 121 KEQQWHRVVQVIKWMLSKGQGSTMGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAI-YYRNNML--E 197 (287)
Q Consensus 121 k~~~~~~A~qv~~~M~~~G~~pd~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsg-Y~k~G~~--e 197 (287)
..+++++|+..+....+.. ..+..+|..+-..|...|+.++|...|++....+- .+...|..+-.. |.+.|++ +
T Consensus 22 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRG--ENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp -----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHC--SCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHhcCCcchH
Confidence 4566777777777666542 24567889999999999999999999999876542 223456667777 7799998 9
Q ss_pred HHHHHHHHHHHCCCCCChHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHHh
Q 047178 198 RLIKLFKGLEAFDRKPPEKSIVQRVADAYEVLGLLEEKERVLEKYKDLFT 247 (287)
Q Consensus 198 eA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~G~leeA~~ll~~m~~l~~ 247 (287)
+|...|.+..... |+....+..+...|...|++++|...+++...+..
T Consensus 99 ~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 146 (177)
T 2e2e_A 99 QTRAMIDKALALD--SNEITALMLLASDAFMQANYAQAIELWQKVMDLNS 146 (177)
T ss_dssp HHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCC
Confidence 9999999988753 55456677888899999999999999987766543
No 161
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=96.47 E-value=0.055 Score=48.99 Aligned_cols=134 Identities=13% Similarity=0.010 Sum_probs=98.0
Q ss_pred HHHHHHHHccchhhHHHHHHHHHHC----C-CCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHhhhC--CCCCCC--hhhH
Q 047178 114 KALLALEKEQQWHRVVQVIKWMLSK----G-QGS-TMGTCGQLIRALDMDHRAEEAHKFWEKRIGI--DLHSVP--WQLC 183 (287)
Q Consensus 114 ~ai~~L~k~~~~~~A~qv~~~M~~~----G-~~p-d~~TYnaLI~~y~K~G~leeA~~lF~eM~~~--g~~sv~--~~ty 183 (287)
.+-..+...|+++.|++.+....+. + ..+ ...+|+.|=..|...|+.++|.+.|++.... .....+ ..+|
T Consensus 146 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 225 (378)
T 3q15_A 146 KVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISL 225 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 4444567889999998888776542 1 111 2456788888899999999999999987541 110011 1357
Q ss_pred HHHHHHHHHcCCHhHHHHHHHHHHHC---CCCCChHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHHh
Q 047178 184 KSMIAIYYRNNMLERLIKLFKGLEAF---DRKPPEKSIVQRVADAYEVLGLLEEKERVLEKYKDLFT 247 (287)
Q Consensus 184 NsmIsgY~k~G~~eeA~~Lf~eM~~~---Gi~PD~~~Ty~sLI~a~~k~G~leeA~~ll~~m~~l~~ 247 (287)
+.|=..|...|++++|++.|.+-... .-.|+...++..+-..|.+.|+.++|...+++...+..
T Consensus 226 ~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 292 (378)
T 3q15_A 226 LNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHIT 292 (378)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 88888999999999999999988761 01244346678888899999999999999998777643
No 162
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=96.47 E-value=0.017 Score=56.50 Aligned_cols=96 Identities=9% Similarity=0.003 Sum_probs=75.1
Q ss_pred HHHHcCCHHHHHHHHHHhhh---CCCCC-CCh--hhHHHHHHHHHHcCCHhHHHHHHHHHHH-----CC-CCCChHHHHH
Q 047178 153 ALDMDHRAEEAHKFWEKRIG---IDLHS-VPW--QLCKSMIAIYYRNNMLERLIKLFKGLEA-----FD-RKPPEKSIVQ 220 (287)
Q Consensus 153 ~y~K~G~leeA~~lF~eM~~---~g~~s-v~~--~tyNsmIsgY~k~G~~eeA~~Lf~eM~~-----~G-i~PD~~~Ty~ 220 (287)
.+-..|+.++|+.++++..+ +-+.. -|. .++|.|-..|...|++++|..++.+..+ .| -.|+...+|+
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 45678999999999988653 11110 011 4799999999999999999999998753 33 4688788899
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhHHHhh
Q 047178 221 RVADAYEVLGLLEEKERVLEKYKDLFTE 248 (287)
Q Consensus 221 sLI~a~~k~G~leeA~~ll~~m~~l~~~ 248 (287)
.|-..|...|++++|+.++++...++..
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~ 425 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLV 425 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999876666543
No 163
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=96.44 E-value=0.032 Score=38.92 Aligned_cols=81 Identities=15% Similarity=0.196 Sum_probs=57.3
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChHHHHHHHH
Q 047178 144 MGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNNMLERLIKLFKGLEAFDRKPPEKSIVQRVA 223 (287)
Q Consensus 144 ~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI 223 (287)
...|..+-..|.+.|++++|...|++....+- .....|..+-..|.+.|++++|...|.+.... .|+....+..+-
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~l~ 84 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP--NNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAKQNLG 84 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCCHHHHHHHH
Confidence 34667777788889999999999998876432 22345777888899999999999999988764 354334444444
Q ss_pred HHHHh
Q 047178 224 DAYEV 228 (287)
Q Consensus 224 ~a~~k 228 (287)
..+..
T Consensus 85 ~~~~~ 89 (91)
T 1na3_A 85 NAKQK 89 (91)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 44443
No 164
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.43 E-value=0.015 Score=56.01 Aligned_cols=94 Identities=11% Similarity=0.041 Sum_probs=74.5
Q ss_pred HcCCHHHHHHHHHHhhh---CCCCCC-Ch--hhHHHHHHHHHHcCCHhHHHHHHHHHHH-----CC-CCCChHHHHHHHH
Q 047178 156 MDHRAEEAHKFWEKRIG---IDLHSV-PW--QLCKSMIAIYYRNNMLERLIKLFKGLEA-----FD-RKPPEKSIVQRVA 223 (287)
Q Consensus 156 K~G~leeA~~lF~eM~~---~g~~sv-~~--~tyNsmIsgY~k~G~~eeA~~Lf~eM~~-----~G-i~PD~~~Ty~sLI 223 (287)
..|+.++|+.++++..+ +-+.+- |. .++|.|-..|...|++++|..++++..+ .| -.||...+|+.|-
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 35789999999987653 211100 11 4799999999999999999999998753 34 4688888899999
Q ss_pred HHHHhcCCHHHHHHHHHHHhHHHhhh
Q 047178 224 DAYEVLGLLEEKERVLEKYKDLFTEK 249 (287)
Q Consensus 224 ~a~~k~G~leeA~~ll~~m~~l~~~~ 249 (287)
..|...|++++|+.++++...++...
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~ 415 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVA 415 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999988887654
No 165
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=96.41 E-value=0.011 Score=59.43 Aligned_cols=120 Identities=13% Similarity=-0.017 Sum_probs=95.0
Q ss_pred HHccchhhHHHHHHHHHH-------CCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHH
Q 047178 120 EKEQQWHRVVQVIKWMLS-------KGQGSTMGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYR 192 (287)
Q Consensus 120 ~k~~~~~~A~qv~~~M~~-------~G~~pd~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k 192 (287)
...+++++|++.++.... .....+...|..+-..|.+.|+.++|.+.|++..+.+- .++..|+.+=..|.+
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p--~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVG--WRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc--chHHHHHHHHHHHHH
Confidence 567888999999988771 11233566788889999999999999999999987542 234568888889999
Q ss_pred cCCHhHHHHHHHHHHHCCCCCChHHHHHHHHHHHHhcCCHHHHHHHHHHHhH
Q 047178 193 NNMLERLIKLFKGLEAFDRKPPEKSIVQRVADAYEVLGLLEEKERVLEKYKD 244 (287)
Q Consensus 193 ~G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~G~leeA~~ll~~m~~ 244 (287)
.|++++|.+.|++..+. .|+....|..+-.+|...|++++ ...+++...
T Consensus 480 ~g~~~~A~~~~~~al~l--~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~ 528 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDT--FPGELAPKLALAATAELAGNTDE-HKFYQTVWS 528 (681)
T ss_dssp HTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHH
Confidence 99999999999998875 36545668888889999999988 877776544
No 166
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=96.34 E-value=0.041 Score=51.17 Aligned_cols=120 Identities=11% Similarity=0.035 Sum_probs=84.0
Q ss_pred HHHHHHHHccchhhHHHHHHHHHHC--------------CCC-CChhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCC
Q 047178 114 KALLALEKEQQWHRVVQVIKWMLSK--------------GQG-STMGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSV 178 (287)
Q Consensus 114 ~ai~~L~k~~~~~~A~qv~~~M~~~--------------G~~-pd~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv 178 (287)
..-..+.+.+++++|++.+...++. ... .+..+|+-+-.+|.+.|+.++|.+.|++..+.+- .
T Consensus 228 ~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p--~ 305 (370)
T 1ihg_A 228 NIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDP--S 305 (370)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT--T
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCc--h
Confidence 3444567788888888888776641 011 2345778888888999999999999999887542 2
Q ss_pred ChhhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChHHHHHHHHHHHHhcCCHHHHHH
Q 047178 179 PWQLCKSMIAIYYRNNMLERLIKLFKGLEAFDRKPPEKSIVQRVADAYEVLGLLEEKER 237 (287)
Q Consensus 179 ~~~tyNsmIsgY~k~G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~G~leeA~~ 237 (287)
....|..+=.+|.+.|++++|++.|++..+. .|+....+..+...+...++.+++.+
T Consensus 306 ~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l--~P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 306 NTKALYRRAQGWQGLKEYDQALADLKKAQEI--APEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 2346777888899999999999999987764 45544555566666666666655543
No 167
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=96.29 E-value=0.078 Score=46.71 Aligned_cols=91 Identities=13% Similarity=-0.018 Sum_probs=57.5
Q ss_pred HHHHHHccCCCcchHHHHHHHHHHccCCCCHHHHHHHHHHHHHccchhhHHHHHHHHHHCCCCCChhHHHHHHHHHHHcC
Q 047178 79 LVNTLLDLKNSKEDVYGTLDAWVAWEQNFPVGSLKKALLALEKEQQWHRVVQVIKWMLSKGQGSTMGTCGQLIRALDMDH 158 (287)
Q Consensus 79 Li~~l~~lg~~~~~v~~~Ld~~~~~~~~~~~~s~~~ai~~L~k~~~~~~A~qv~~~M~~~G~~pd~~TYnaLI~~y~K~G 158 (287)
+-..+...|+...++ ..+...... ..-....+...-..+.+.|++++|++.+...++.. ..+...|..+-.+|...|
T Consensus 10 ~g~~~~~~g~~~~A~-~~~~~al~~-~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g 86 (281)
T 2c2l_A 10 QGNRLFVGRKYPEAA-ACYGRAITR-NPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQLEME 86 (281)
T ss_dssp HHHHHHHTTCHHHHH-HHHHHHHHH-CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHH-HHHHHHHHh-CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC
Confidence 444555666655443 223332222 11123444455556778888999988888776532 235567888888888999
Q ss_pred CHHHHHHHHHHhhh
Q 047178 159 RAEEAHKFWEKRIG 172 (287)
Q Consensus 159 ~leeA~~lF~eM~~ 172 (287)
+.++|...|.+...
T Consensus 87 ~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 87 SYDEAIANLQRAYS 100 (281)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999998888764
No 168
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=96.28 E-value=0.062 Score=45.12 Aligned_cols=102 Identities=11% Similarity=-0.008 Sum_probs=75.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCC-----Ch-----hhHHHHHHHHHHcCCHhHHHHHHHHHHHC-----CC
Q 047178 147 CGQLIRALDMDHRAEEAHKFWEKRIGIDLHSV-----PW-----QLCKSMIAIYYRNNMLERLIKLFKGLEAF-----DR 211 (287)
Q Consensus 147 YnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv-----~~-----~tyNsmIsgY~k~G~~eeA~~Lf~eM~~~-----Gi 211 (287)
+..+=+.+.+.|++++|...|++-.+-+-..+ .. ..|+-+=.+|.+.|++++|+..|+.-.+. -+
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~ 93 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL 93 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence 33444557788888888888888765321100 11 26888888999999999999999988763 23
Q ss_pred CCChHHHH----HHHHHHHHhcCCHHHHHHHHHHHhHHHhh
Q 047178 212 KPPEKSIV----QRVADAYEVLGLLEEKERVLEKYKDLFTE 248 (287)
Q Consensus 212 ~PD~~~Ty----~sLI~a~~k~G~leeA~~ll~~m~~l~~~ 248 (287)
.||..-.| .-.-.++..+|++++|..-+++...+--+
T Consensus 94 ~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~ 134 (159)
T 2hr2_A 94 NQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEE 134 (159)
T ss_dssp TSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 78876666 67777899999999999999988777544
No 169
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=96.15 E-value=0.038 Score=51.42 Aligned_cols=99 Identities=13% Similarity=0.077 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhhhC--------------CCCCCChhhHHHHHHHHHHcCCHhHHHHHHHHHHHCCC
Q 047178 146 TCGQLIRALDMDHRAEEAHKFWEKRIGI--------------DLHSVPWQLCKSMIAIYYRNNMLERLIKLFKGLEAFDR 211 (287)
Q Consensus 146 TYnaLI~~y~K~G~leeA~~lF~eM~~~--------------g~~sv~~~tyNsmIsgY~k~G~~eeA~~Lf~eM~~~Gi 211 (287)
.|..+=..|.+.|+.++|.+.|++.... ...+.....|+.+-.+|.+.|++++|++.|.+..+.
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~-- 302 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI-- 302 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh--
Confidence 4677778899999999999999987651 011111246888889999999999999999998874
Q ss_pred CCChHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHH
Q 047178 212 KPPEKSIVQRVADAYEVLGLLEEKERVLEKYKDLF 246 (287)
Q Consensus 212 ~PD~~~Ty~sLI~a~~k~G~leeA~~ll~~m~~l~ 246 (287)
.|+....|..+-.+|...|++++|...+++...+.
T Consensus 303 ~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~ 337 (370)
T 1ihg_A 303 DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA 337 (370)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 46655678888889999999999999998766553
No 170
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=96.05 E-value=0.058 Score=40.07 Aligned_cols=83 Identities=10% Similarity=0.037 Sum_probs=63.1
Q ss_pred HHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChHHHHHHHHHHHHhcCCHHHHHHHHH
Q 047178 161 EEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNNMLERLIKLFKGLEAFDRKPPEKSIVQRVADAYEVLGLLEEKERVLE 240 (287)
Q Consensus 161 eeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~G~leeA~~ll~ 240 (287)
++|.+.|++....+- .+...|..+-..|.+.|++++|+..|++..... |+....|..+-..|...|+.++|...++
T Consensus 2 ~~a~~~~~~al~~~p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~ 77 (115)
T 2kat_A 2 QAITERLEAMLAQGT--DNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD--PTYSVAWKWLGKTLQGQGDRAGARQAWE 77 (115)
T ss_dssp CCHHHHHHHHHTTTC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCC--CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 356777887766542 233567788888999999999999999887653 5545667888888999999999999988
Q ss_pred HHhHHHh
Q 047178 241 KYKDLFT 247 (287)
Q Consensus 241 ~m~~l~~ 247 (287)
+...+..
T Consensus 78 ~al~~~~ 84 (115)
T 2kat_A 78 SGLAAAQ 84 (115)
T ss_dssp HHHHHHH
T ss_pred HHHHhcc
Confidence 7766654
No 171
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=96.02 E-value=0.032 Score=43.19 Aligned_cols=99 Identities=13% Similarity=0.162 Sum_probs=76.3
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHcCCHhHHHHHHHHHHHCC--CCCC---hHHHH
Q 047178 145 GTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNNMLERLIKLFKGLEAFD--RKPP---EKSIV 219 (287)
Q Consensus 145 ~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~G~~eeA~~Lf~eM~~~G--i~PD---~~~Ty 219 (287)
.++.-|=+.|.+.|++++|.+.|++..+.+ +.....|+-+=.+|.+.|++++|++.|....+.. ..++ ...+|
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~--p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELD--PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence 345566678889999999999999988754 2234578889999999999999999999876532 1122 11357
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhHH
Q 047178 220 QRVADAYEVLGLLEEKERVLEKYKDL 245 (287)
Q Consensus 220 ~sLI~a~~k~G~leeA~~ll~~m~~l 245 (287)
..+-.+|...|++++|.+.+++...+
T Consensus 87 ~~lg~~~~~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 87 SRAGNAFQKQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 77888999999999999999876543
No 172
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=96.02 E-value=0.033 Score=53.50 Aligned_cols=89 Identities=15% Similarity=0.034 Sum_probs=74.5
Q ss_pred HHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChHHHHHHHHHHHHhcCCH
Q 047178 153 ALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNNMLERLIKLFKGLEAFDRKPPEKSIVQRVADAYEVLGLL 232 (287)
Q Consensus 153 ~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~G~l 232 (287)
.|.+.|+.++|.+.|++..+.+- .....|+.+-.+|.+.|++++|++.|++..+. .|+....|..+-.+|...|++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELNP--SNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHhCCHHHHHHHHHHHHHhCC--ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCH
Confidence 45678999999999999877542 23457888999999999999999999998876 466567788888999999999
Q ss_pred HHHHHHHHHHhHH
Q 047178 233 EEKERVLEKYKDL 245 (287)
Q Consensus 233 eeA~~ll~~m~~l 245 (287)
++|.+.+++...+
T Consensus 91 ~eA~~~~~~al~~ 103 (477)
T 1wao_1 91 RAALRDYETVVKV 103 (477)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999876554
No 173
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=95.91 E-value=0.081 Score=50.61 Aligned_cols=97 Identities=11% Similarity=0.027 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHccchhhHHHHHHHHHHC---CCCCC----hhHHHHHHHHHHHcCCHHHHHHHHHHhhh-----CCCCCC
Q 047178 111 SLKKALLALEKEQQWHRVVQVIKWMLSK---GQGST----MGTCGQLIRALDMDHRAEEAHKFWEKRIG-----IDLHSV 178 (287)
Q Consensus 111 s~~~ai~~L~k~~~~~~A~qv~~~M~~~---G~~pd----~~TYnaLI~~y~K~G~leeA~~lF~eM~~-----~g~~sv 178 (287)
.+...+..+.+.|++++|+++++..++. -++|+ ..+++.|...|...|++++|+.++++... -|-.-+
T Consensus 289 ~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp 368 (429)
T 3qwp_A 289 ESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHP 368 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCH
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCCh
Confidence 4445677788899999999999888753 23443 35789999999999999999999998753 121111
Q ss_pred C-hhhHHHHHHHHHHcCCHhHHHHHHHHHH
Q 047178 179 P-WQLCKSMIAIYYRNNMLERLIKLFKGLE 207 (287)
Q Consensus 179 ~-~~tyNsmIsgY~k~G~~eeA~~Lf~eM~ 207 (287)
. -.+|+.|=..|...|++++|..+|.+-.
T Consensus 369 ~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 369 VRGVQVMKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 1 1479999999999999999999998764
No 174
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=95.68 E-value=0.089 Score=41.53 Aligned_cols=98 Identities=15% Similarity=0.008 Sum_probs=75.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhhhC--------CC--------CCCChhhHHHHHHHHHHcCCHhHHHHHHHHHHHCC
Q 047178 147 CGQLIRALDMDHRAEEAHKFWEKRIGI--------DL--------HSVPWQLCKSMIAIYYRNNMLERLIKLFKGLEAFD 210 (287)
Q Consensus 147 YnaLI~~y~K~G~leeA~~lF~eM~~~--------g~--------~sv~~~tyNsmIsgY~k~G~~eeA~~Lf~eM~~~G 210 (287)
+..+=+.|.+.|++++|...|.+.... +. .+.....|..+-.+|.+.|++++|+..|......
T Consensus 14 ~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~- 92 (162)
T 3rkv_A 14 LRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKR- 92 (162)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc-
Confidence 334445678899999999999987653 00 0111246888899999999999999999998875
Q ss_pred CCCChHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHH
Q 047178 211 RKPPEKSIVQRVADAYEVLGLLEEKERVLEKYKDLF 246 (287)
Q Consensus 211 i~PD~~~Ty~sLI~a~~k~G~leeA~~ll~~m~~l~ 246 (287)
.|+....|..+-.+|...|++++|...+++...+.
T Consensus 93 -~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 127 (162)
T 3rkv_A 93 -EETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH 127 (162)
T ss_dssp -STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred -CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC
Confidence 46656778888899999999999999998766553
No 175
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=95.67 E-value=0.084 Score=50.20 Aligned_cols=97 Identities=8% Similarity=-0.017 Sum_probs=78.6
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCC--------------hhhHHHHHHHHHHcCCHhHHHHHHHHHHHCC
Q 047178 145 GTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVP--------------WQLCKSMIAIYYRNNMLERLIKLFKGLEAFD 210 (287)
Q Consensus 145 ~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~--------------~~tyNsmIsgY~k~G~~eeA~~Lf~eM~~~G 210 (287)
..|..+=..|.+.|++++|...|++.....-. .+ ...|+.+-.+|.+.|++++|+..|.+..+.
T Consensus 269 ~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~-~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~- 346 (457)
T 1kt0_A 269 AIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEM-EYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL- 346 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT-CCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcc-cccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-
Confidence 46777888899999999999999998763211 11 246888889999999999999999998875
Q ss_pred CCCChHHHHHHHHHHHHhcCCHHHHHHHHHHHhH
Q 047178 211 RKPPEKSIVQRVADAYEVLGLLEEKERVLEKYKD 244 (287)
Q Consensus 211 i~PD~~~Ty~sLI~a~~k~G~leeA~~ll~~m~~ 244 (287)
.|+....|..+-.+|...|++++|...|++...
T Consensus 347 -~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~ 379 (457)
T 1kt0_A 347 -DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLE 379 (457)
T ss_dssp -STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred -CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 455556788888899999999999999886544
No 176
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=95.59 E-value=0.41 Score=39.95 Aligned_cols=83 Identities=13% Similarity=0.055 Sum_probs=34.2
Q ss_pred chhhHHHHHHHHHHCCCCCChhHHHHHHHHHHH----cCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHH----cCC
Q 047178 124 QWHRVVQVIKWMLSKGQGSTMGTCGQLIRALDM----DHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYR----NNM 195 (287)
Q Consensus 124 ~~~~A~qv~~~M~~~G~~pd~~TYnaLI~~y~K----~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k----~G~ 195 (287)
+.++|++.|..-.+.| +...+..|=..|.. .++.++|.+.|++-.+.+........++.|=..|.. .++
T Consensus 68 ~~~~A~~~~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d 144 (212)
T 3rjv_A 68 DYPQARQLAEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPED 144 (212)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCC
T ss_pred CHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCC
Confidence 3444444444444432 22333333333333 445555555555544433100001233334444444 444
Q ss_pred HhHHHHHHHHHHHC
Q 047178 196 LERLIKLFKGLEAF 209 (287)
Q Consensus 196 ~eeA~~Lf~eM~~~ 209 (287)
+++|+.+|..-.+.
T Consensus 145 ~~~A~~~~~~A~~~ 158 (212)
T 3rjv_A 145 DVKASEYFKGSSSL 158 (212)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHc
Confidence 55555555554444
No 177
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.58 E-value=0.24 Score=44.79 Aligned_cols=136 Identities=12% Similarity=0.032 Sum_probs=85.8
Q ss_pred HHHHHHHHHHccchhhHHHHHHHHHHC-CCCCChh----HHHHHHHHHHHcCCHHHHHHHHHHhhh----CCCCCCChhh
Q 047178 112 LKKALLALEKEQQWHRVVQVIKWMLSK-GQGSTMG----TCGQLIRALDMDHRAEEAHKFWEKRIG----IDLHSVPWQL 182 (287)
Q Consensus 112 ~~~ai~~L~k~~~~~~A~qv~~~M~~~-G~~pd~~----TYnaLI~~y~K~G~leeA~~lF~eM~~----~g~~sv~~~t 182 (287)
+..+...+.+.|++++|.+++....+. +..++.. +.+.+=..+...|..++|..++.+... .+....-..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 445666677888888888887766542 1112211 122222223346788888888877643 1111111235
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHHC----CCCCChHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHHh
Q 047178 183 CKSMIAIYYRNNMLERLIKLFKGLEAF----DRKPPEKSIVQRVADAYEVLGLLEEKERVLEKYKDLFT 247 (287)
Q Consensus 183 yNsmIsgY~k~G~~eeA~~Lf~eM~~~----Gi~PD~~~Ty~sLI~a~~k~G~leeA~~ll~~m~~l~~ 247 (287)
+..|...|...|++++|..++.+.... +-.|..+.+|..++..|...|++++|..++.+...+..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~ 206 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAAN 206 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhh
Confidence 777888888899999998888876532 22344445677788888888999998888876655543
No 178
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=95.57 E-value=0.28 Score=49.87 Aligned_cols=124 Identities=10% Similarity=0.027 Sum_probs=71.7
Q ss_pred HHHHHHHHccchhhHHHHHHHHHHCC---------CCCC------------hhHHHHHHHHHHHcCCHHHHHHHHHHhhh
Q 047178 114 KALLALEKEQQWHRVVQVIKWMLSKG---------QGST------------MGTCGQLIRALDMDHRAEEAHKFWEKRIG 172 (287)
Q Consensus 114 ~ai~~L~k~~~~~~A~qv~~~M~~~G---------~~pd------------~~TYnaLI~~y~K~G~leeA~~lF~eM~~ 172 (287)
..+....+.+.+++|.++++.+++.. ..|+ ..+|-..++..-+.|.++.|..+|.+...
T Consensus 383 ~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~ 462 (679)
T 4e6h_A 383 SLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRR 462 (679)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34445566777888888887776531 0131 23567777777777888888888887765
Q ss_pred C-CCCCCChhhHHHHHHHHHHc-CCHhHHHHHHHHHHHCCCCCChHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 047178 173 I-DLHSVPWQLCKSMIAIYYRN-NMLERLIKLFKGLEAFDRKPPEKSIVQRVADAYEVLGLLEEKERVLEK 241 (287)
Q Consensus 173 ~-g~~sv~~~tyNsmIsgY~k~-G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~G~leeA~~ll~~ 241 (287)
. +. .++..|-..+..-.+. +.++.|..+|+...+. .|+....+...++-....|+.+.|+.+|+.
T Consensus 463 ~~~~--~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~--~p~~~~~w~~y~~fe~~~~~~~~AR~lfer 529 (679)
T 4e6h_A 463 LKKL--VTPDIYLENAYIEYHISKDTKTACKVLELGLKY--FATDGEYINKYLDFLIYVNEESQVKSLFES 529 (679)
T ss_dssp TGGG--SCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred hcCC--CChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCchHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 4 21 1122222111112233 3367777777766654 343334455666666666777777777764
No 179
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=95.34 E-value=0.095 Score=38.57 Aligned_cols=64 Identities=14% Similarity=-0.016 Sum_probs=46.3
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHcCCHhHHHHHHHHHHH
Q 047178 143 TMGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNNMLERLIKLFKGLEA 208 (287)
Q Consensus 143 d~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~G~~eeA~~Lf~eM~~ 208 (287)
+..++..|-..|.+.|+.++|...|++..+.+- .....|..+=.+|.+.|++++|.+.|++-.+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDP--DYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST--TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 455677777778888888888888888776542 1223577777888888888888888876553
No 180
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.32 E-value=0.3 Score=44.12 Aligned_cols=129 Identities=12% Similarity=0.005 Sum_probs=91.0
Q ss_pred HHHHHHccchhhHHHHHHHHHHCCCCC-Ch---------------hHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCC
Q 047178 116 LLALEKEQQWHRVVQVIKWMLSKGQGS-TM---------------GTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVP 179 (287)
Q Consensus 116 i~~L~k~~~~~~A~qv~~~M~~~G~~p-d~---------------~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~ 179 (287)
...+.+.|++.+|++.+....+..-.. +. ..+..|...|.+.|+.++|.+++.+.....-....
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 345678899999999999988753221 11 13678899999999999999999987542100011
Q ss_pred h----hhHHHHHHHHHHcCCHhHHHHHHHHHH----HCCCCCChHHHHHHHHHHHHhcCCHHHHHHHHHHHhH
Q 047178 180 W----QLCKSMIAIYYRNNMLERLIKLFKGLE----AFDRKPPEKSIVQRVADAYEVLGLLEEKERVLEKYKD 244 (287)
Q Consensus 180 ~----~tyNsmIsgY~k~G~~eeA~~Lf~eM~----~~Gi~PD~~~Ty~sLI~a~~k~G~leeA~~ll~~m~~ 244 (287)
. ...+.+=..+...|.+++|.+++.+.. ..+..+....++..+...|...|++++|..++.+...
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 163 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLR 163 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHH
Confidence 1 123333333445689999999998875 3455565556778889999999999999999876543
No 181
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=95.21 E-value=0.11 Score=38.24 Aligned_cols=64 Identities=14% Similarity=0.137 Sum_probs=54.2
Q ss_pred hhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHH
Q 047178 181 QLCKSMIAIYYRNNMLERLIKLFKGLEAFDRKPPEKSIVQRVADAYEVLGLLEEKERVLEKYKDLF 246 (287)
Q Consensus 181 ~tyNsmIsgY~k~G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~G~leeA~~ll~~m~~l~ 246 (287)
..|..+=..|.+.|++++|++.|++..+.. |+....|..+-.+|...|++++|...+++...+.
T Consensus 8 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~ 71 (100)
T 3ma5_A 8 FTRYALAQEHLKHDNASRALALFEELVETD--PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVA 71 (100)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 457778889999999999999999988754 5444668888899999999999999998877664
No 182
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=95.21 E-value=0.055 Score=49.28 Aligned_cols=87 Identities=10% Similarity=-0.083 Sum_probs=56.0
Q ss_pred HHHHccchhhHHHHHHHHHHCCCCCChh------------------HHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCC
Q 047178 118 ALEKEQQWHRVVQVIKWMLSKGQGSTMG------------------TCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVP 179 (287)
Q Consensus 118 ~L~k~~~~~~A~qv~~~M~~~G~~pd~~------------------TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~ 179 (287)
.+.+.+++++|+..|...++. .|+.. .|+-|-.+|.+.|++++|...|++....+- ..
T Consensus 188 ~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p--~~ 263 (338)
T 2if4_A 188 SLFKEEKLEEAMQQYEMAIAY--MGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEE--KN 263 (338)
T ss_dssp HTCSSSCCHHHHHHHHHHHHH--SCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHHCT--TC
T ss_pred HHHhcCCHHHHHHHHHHHHHH--hccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CC
Confidence 344566777777777665542 23322 566667777777888888887777765431 12
Q ss_pred hhhHHHHHHHHHHcCCHhHHHHHHHHHHH
Q 047178 180 WQLCKSMIAIYYRNNMLERLIKLFKGLEA 208 (287)
Q Consensus 180 ~~tyNsmIsgY~k~G~~eeA~~Lf~eM~~ 208 (287)
...|..+-.+|...|++++|...|.+..+
T Consensus 264 ~~a~~~lg~a~~~~g~~~~A~~~l~~al~ 292 (338)
T 2if4_A 264 PKALFRRGKAKAELGQMDSARDDFRKAQK 292 (338)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 23566677777778888888887776543
No 183
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=95.21 E-value=0.16 Score=51.72 Aligned_cols=132 Identities=11% Similarity=-0.006 Sum_probs=95.2
Q ss_pred HHHHHHHHHHccchhhHHHHHHHHHHC-C-CCCChhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHH
Q 047178 112 LKKALLALEKEQQWHRVVQVIKWMLSK-G-QGSTMGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAI 189 (287)
Q Consensus 112 ~~~ai~~L~k~~~~~~A~qv~~~M~~~-G-~~pd~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsg 189 (287)
+...+....+.+..+.|..+|...++. + ..+.+....+.|.-.+ .++.+.|..+|+...+.-- -+...|...+.-
T Consensus 437 Wi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~-~~d~e~Ar~ife~~Lk~~p--~~~~~w~~y~~f 513 (679)
T 4e6h_A 437 YCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHI-SKDTKTACKVLELGLKYFA--TDGEYINKYLDF 513 (679)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTT-TSCCHHHHHHHHHHHHHHT--TCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHCC--CchHHHHHHHHH
Confidence 445555566778889999999998775 2 3344555555555332 3459999999999877521 223457888888
Q ss_pred HHHcCCHhHHHHHHHHHHHCCCCC-ChHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHH
Q 047178 190 YYRNNMLERLIKLFKGLEAFDRKP-PEKSIVQRVADAYEVLGLLEEKERVLEKYKDLF 246 (287)
Q Consensus 190 Y~k~G~~eeA~~Lf~eM~~~Gi~P-D~~~Ty~sLI~a~~k~G~leeA~~ll~~m~~l~ 246 (287)
....|..+.|..+|+.-....-.| +....|...++--.+.|.++.+..|.+++...+
T Consensus 514 e~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~ 571 (679)
T 4e6h_A 514 LIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKF 571 (679)
T ss_dssp HHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHS
T ss_pred HHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 888999999999999887664322 234568888888888999999999988766554
No 184
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=95.19 E-value=0.18 Score=48.50 Aligned_cols=86 Identities=12% Similarity=-0.040 Sum_probs=66.1
Q ss_pred ccchhhHHHHHHHHHH---CCCCCC----hhHHHHHHHHHHHcCCHHHHHHHHHHhhh-----CCCCCCCh-hhHHHHHH
Q 047178 122 EQQWHRVVQVIKWMLS---KGQGST----MGTCGQLIRALDMDHRAEEAHKFWEKRIG-----IDLHSVPW-QLCKSMIA 188 (287)
Q Consensus 122 ~~~~~~A~qv~~~M~~---~G~~pd----~~TYnaLI~~y~K~G~leeA~~lF~eM~~-----~g~~sv~~-~tyNsmIs 188 (287)
.|++++|+.+++..++ +-++|+ ..+||.|-..|...|++++|+.++++... -|-..++. .+||.|=.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 4578899888887654 334443 35799999999999999999999998753 22211222 47999999
Q ss_pred HHHHcCCHhHHHHHHHHHH
Q 047178 189 IYYRNNMLERLIKLFKGLE 207 (287)
Q Consensus 189 gY~k~G~~eeA~~Lf~eM~ 207 (287)
.|...|++++|..+|.+-.
T Consensus 391 ~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHH
Confidence 9999999999999998754
No 185
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=95.17 E-value=0.047 Score=49.76 Aligned_cols=96 Identities=14% Similarity=0.010 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCCh------------------hhHHHHHHHHHHcCCHhHHHHHHHHHH
Q 047178 146 TCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPW------------------QLCKSMIAIYYRNNMLERLIKLFKGLE 207 (287)
Q Consensus 146 TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~------------------~tyNsmIsgY~k~G~~eeA~~Lf~eM~ 207 (287)
.|..+=+.|.+.|++++|...|.+..... +.. ..|+.+-.+|.+.|++++|+..|....
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~~---p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al 257 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIAYM---GDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVL 257 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHHHS---CHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHh---ccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45666677888999999999999876532 111 157788889999999999999999987
Q ss_pred HCCCCCChHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHH
Q 047178 208 AFDRKPPEKSIVQRVADAYEVLGLLEEKERVLEKYKDLF 246 (287)
Q Consensus 208 ~~Gi~PD~~~Ty~sLI~a~~k~G~leeA~~ll~~m~~l~ 246 (287)
+. .|+....|..+-.+|...|++++|...|++...+.
T Consensus 258 ~~--~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~ 294 (338)
T 2if4_A 258 TE--EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA 294 (338)
T ss_dssp HH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--
T ss_pred Hh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 64 46545678888889999999999999998765543
No 186
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=94.89 E-value=0.25 Score=54.68 Aligned_cols=111 Identities=13% Similarity=0.018 Sum_probs=68.9
Q ss_pred CHHHHHHHHHHHHHccchhhHHHHHHHHHHCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHH
Q 047178 108 PVGSLKKALLALEKEQQWHRVVQVIKWMLSKGQGSTMGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMI 187 (287)
Q Consensus 108 ~~~s~~~ai~~L~k~~~~~~A~qv~~~M~~~G~~pd~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmI 187 (287)
....+..+=..+...|++++|..+|... ..|..|...|++.|++++|.+.+.+-.. ..+|.-+-
T Consensus 1194 n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~n-------~~aWkev~ 1257 (1630)
T 1xi4_A 1194 NNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKANS-------TRTWKEVC 1257 (1630)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhCC-------HHHHHHHH
Confidence 3455666666677788888888887663 3788888888888888888888876421 12355555
Q ss_pred HHHHHcCCHhHHHHHHHHHHHCCCCCChHHHHHHHHHHHHhcCCHHHHHHHHH
Q 047178 188 AIYYRNNMLERLIKLFKGLEAFDRKPPEKSIVQRVADAYEVLGLLEEKERVLE 240 (287)
Q Consensus 188 sgY~k~G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~G~leeA~~ll~ 240 (287)
.++...|.++.|....-.+. +.||. +..++.-|.+.|.+++|..+++
T Consensus 1258 ~acve~~Ef~LA~~cgl~Ii---v~~de---Leeli~yYe~~G~feEAI~LlE 1304 (1630)
T 1xi4_A 1258 FACVDGKEFRLAQMCGLHIV---VHADE---LEELINYYQDRGYFEELITMLE 1304 (1630)
T ss_pred HHHhhhhHHHHHHHHHHhhh---cCHHH---HHHHHHHHHHcCCHHHHHHHHH
Confidence 55555555555554433211 23432 4566666666666666666554
No 187
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=94.65 E-value=0.22 Score=34.44 Aligned_cols=63 Identities=17% Similarity=0.271 Sum_probs=52.3
Q ss_pred hhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChHHHHHHHHHHHHhcCCHHHHHHHHHHHhHH
Q 047178 181 QLCKSMIAIYYRNNMLERLIKLFKGLEAFDRKPPEKSIVQRVADAYEVLGLLEEKERVLEKYKDL 245 (287)
Q Consensus 181 ~tyNsmIsgY~k~G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~G~leeA~~ll~~m~~l 245 (287)
..|..+-..|.+.|++++|+..|.+..... |+....+..+-..|...|++++|...+++...+
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 357777788999999999999999987653 544566788888999999999999999887665
No 188
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=94.49 E-value=1.1 Score=40.75 Aligned_cols=84 Identities=10% Similarity=0.030 Sum_probs=48.4
Q ss_pred HHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChH-HHHHHHHH-HHHhcCCHHHHHH
Q 047178 160 AEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNNMLERLIKLFKGLEAFDRKPPEK-SIVQRVAD-AYEVLGLLEEKER 237 (287)
Q Consensus 160 leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~G~~eeA~~Lf~eM~~~Gi~PD~~-~Ty~sLI~-a~~k~G~leeA~~ 237 (287)
.++|...|++..+.+. ....+|..+-..|.+.|++++|.+.|++.......|+.. ..+..+.. .+...|+.++|..
T Consensus 316 ~~~A~~~~~~a~~~~~--~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~ 393 (472)
T 4g1t_A 316 IGHAVAHLKKADEAND--NLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIH 393 (472)
T ss_dssp HHHHHHHHHHHHHHCT--TTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHH
T ss_pred HHHHHHHHHHHhhcCC--chhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 4455555555443321 112346667778888888888888888877765444321 11122111 2346788888887
Q ss_pred HHHHHhHH
Q 047178 238 VLEKYKDL 245 (287)
Q Consensus 238 ll~~m~~l 245 (287)
.+.+...+
T Consensus 394 ~y~kal~i 401 (472)
T 4g1t_A 394 HFIEGVKI 401 (472)
T ss_dssp HHHHHHHS
T ss_pred HHHHHHhc
Confidence 77665443
No 189
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=94.46 E-value=2.7 Score=39.20 Aligned_cols=113 Identities=4% Similarity=-0.101 Sum_probs=76.9
Q ss_pred cchhhHHHHHHHHHHCCCCCChhHHHHHHHHHHHcC---CHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHH----cCC
Q 047178 123 QQWHRVVQVIKWMLSKGQGSTMGTCGQLIRALDMDH---RAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYR----NNM 195 (287)
Q Consensus 123 ~~~~~A~qv~~~M~~~G~~pd~~TYnaLI~~y~K~G---~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k----~G~ 195 (287)
++.++|++.+....+.| +...+..|=..|.+.| +.++|.+.|++..+.+. ...+..|=..|.. .++
T Consensus 310 ~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~~----~~a~~~Lg~~y~~g~g~~~~ 382 (490)
T 2xm6_A 310 KNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKGE----KAAQFNLGNALLQGKGVKKD 382 (490)
T ss_dssp CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTTC----HHHHHHHHHHHHHTSSSCCC
T ss_pred CCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCCC----HHHHHHHHHHHHcCCCCCCC
Confidence 56777777777766654 3345566666666655 67788888887776542 1345666667777 788
Q ss_pred HhHHHHHHHHHHHCCCCCChHHHHHHHHHHHHh----cCCHHHHHHHHHHHhHHH
Q 047178 196 LERLIKLFKGLEAFDRKPPEKSIVQRVADAYEV----LGLLEEKERVLEKYKDLF 246 (287)
Q Consensus 196 ~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k----~G~leeA~~ll~~m~~l~ 246 (287)
+++|+++|+.-.+.|. | ..+..|-..|.. .++.++|...+++....-
T Consensus 383 ~~~A~~~~~~A~~~~~-~---~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 383 EQQAAIWMRKAAEQGL-S---AAQVQLGEIYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp HHHHHHHHHHHHHTTC-H---HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCC-H---HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 8888888888877762 2 335566666776 788888888887766554
No 190
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=94.46 E-value=2.9 Score=39.00 Aligned_cols=112 Identities=10% Similarity=0.028 Sum_probs=71.0
Q ss_pred ccchhhHHHHHHHHHHCCCCCChhHHHHHHHHHHH----cCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHH----c
Q 047178 122 EQQWHRVVQVIKWMLSKGQGSTMGTCGQLIRALDM----DHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYR----N 193 (287)
Q Consensus 122 ~~~~~~A~qv~~~M~~~G~~pd~~TYnaLI~~y~K----~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k----~ 193 (287)
.+++++|++.|+...+.| +...+..|=..|.. .++.++|.+.|++..+.+. ...+..|-..|.+ .
T Consensus 128 ~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~----~~a~~~Lg~~y~~g~g~~ 200 (490)
T 2xm6_A 128 KVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGN----VWSCNQLGYMYSRGLGVE 200 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC----HHHHHHHHHHHHHTSSSC
T ss_pred CCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC----HHHHHHHHHHHhcCCCCC
Confidence 456677777777666654 34455556566665 6677777777777766542 2345556666666 6
Q ss_pred CCHhHHHHHHHHHHHCCCCCChHHHHHHHHHHHHh----cCCHHHHHHHHHHHhH
Q 047178 194 NMLERLIKLFKGLEAFDRKPPEKSIVQRVADAYEV----LGLLEEKERVLEKYKD 244 (287)
Q Consensus 194 G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k----~G~leeA~~ll~~m~~ 244 (287)
+++++|+++|..-.+.| + ...+..+-..|.. .++.++|...+++...
T Consensus 201 ~~~~~A~~~~~~a~~~~---~-~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~ 251 (490)
T 2xm6_A 201 RNDAISAQWYRKSATSG---D-ELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAE 251 (490)
T ss_dssp CCHHHHHHHHHHHHHTT---C-HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHHHCC---C-HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 77777777777777665 2 2335555555655 6777777777776543
No 191
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=94.05 E-value=0.43 Score=52.81 Aligned_cols=114 Identities=11% Similarity=0.063 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHccchhhHHHHHHHHHHCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHH
Q 047178 110 GSLKKALLALEKEQQWHRVVQVIKWMLSKGQGSTMGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAI 189 (287)
Q Consensus 110 ~s~~~ai~~L~k~~~~~~A~qv~~~M~~~G~~pd~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsg 189 (287)
..+..+-..+.+.|++++|++.+.. .-|...|.-++.+|.+.|++++|.+.+..-....- +....+-+.-+
T Consensus 1106 ~vWsqLAKAql~~G~~kEAIdsYiK------AdD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~---e~~Idt~Lafa 1176 (1630)
T 1xi4_A 1106 AVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR---ESYVETELIFA 1176 (1630)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHh------cCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcc---cccccHHHHHH
Confidence 3444556667777888888777744 14566677788888888888888887765443221 11123346666
Q ss_pred HHHcCCHhHHHHHHHHHHHCCCCCChHHHHHHHHHHHHhcCCHHHHHHHHH
Q 047178 190 YYRNNMLERLIKLFKGLEAFDRKPPEKSIVQRVADAYEVLGLLEEKERVLE 240 (287)
Q Consensus 190 Y~k~G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~G~leeA~~ll~ 240 (287)
|++.+++++..... . .|+. ..|..+-+.|...|++++|..++.
T Consensus 1177 YAKl~rleele~fI-----~--~~n~-ad~~~iGd~le~eg~YeeA~~~Y~ 1219 (1630)
T 1xi4_A 1177 LAKTNRLAELEEFI-----N--GPNN-AHIQQVGDRCYDEKMYDAAKLLYN 1219 (1630)
T ss_pred HHhhcCHHHHHHHH-----h--CCCH-HHHHHHHHHHHhcCCHHHHHHHHH
Confidence 77766666432221 1 1221 223445555666666666665555
No 192
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=93.94 E-value=0.23 Score=35.68 Aligned_cols=63 Identities=11% Similarity=0.057 Sum_probs=52.6
Q ss_pred hHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHH
Q 047178 182 LCKSMIAIYYRNNMLERLIKLFKGLEAFDRKPPEKSIVQRVADAYEVLGLLEEKERVLEKYKDLF 246 (287)
Q Consensus 182 tyNsmIsgY~k~G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~G~leeA~~ll~~m~~l~ 246 (287)
.|..+-..|.+.|++++|++.|.+.... .|+....+..+-.+|...|++++|...+++...+.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 68 (111)
T 2l6j_A 6 KQKEQGNSLFKQGLYREAVHCYDQLITA--QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT 68 (111)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 4677788899999999999999998775 45545778888889999999999999998766553
No 193
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=93.94 E-value=1.1 Score=40.76 Aligned_cols=135 Identities=12% Similarity=-0.032 Sum_probs=88.7
Q ss_pred HHHHHHHHHHHHccchhhHHHHHHHHHHC-----C---CCCChhHHHHHHHHHHHcCCHHHHHHHHHHhhhC-----CCC
Q 047178 110 GSLKKALLALEKEQQWHRVVQVIKWMLSK-----G---QGSTMGTCGQLIRALDMDHRAEEAHKFWEKRIGI-----DLH 176 (287)
Q Consensus 110 ~s~~~ai~~L~k~~~~~~A~qv~~~M~~~-----G---~~pd~~TYnaLI~~y~K~G~leeA~~lF~eM~~~-----g~~ 176 (287)
..++.+=..+...|+.++|++.|+.-++. + .....++|+-|=..|...|+.++|...|++...- +..
T Consensus 52 ~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~ 131 (472)
T 4g1t_A 52 TMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPY 131 (472)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSS
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccccc
Confidence 33444445567889999999999875431 1 2234578999999999999999999999986531 100
Q ss_pred CC-ChhhHHHHHHHHHHc--CCHhHHHHHHHHHHHCCCCCChHHHHHHHHHH---HHhcCCHHHHHHHHHHHhHHH
Q 047178 177 SV-PWQLCKSMIAIYYRN--NMLERLIKLFKGLEAFDRKPPEKSIVQRVADA---YEVLGLLEEKERVLEKYKDLF 246 (287)
Q Consensus 177 sv-~~~tyNsmIsgY~k~--G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a---~~k~G~leeA~~ll~~m~~l~ 246 (287)
.+ ...+|+.+=.++.+. +++++|++.|++-.+. .|+....+..+..+ +...|..++|.+.+.+...+-
T Consensus 132 ~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~--~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~ 205 (472)
T 4g1t_A 132 RIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK--KPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN 205 (472)
T ss_dssp CCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC
T ss_pred chhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC
Confidence 01 113455554555554 4689999999987764 57654445544444 344567777888777766553
No 194
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=93.92 E-value=0.81 Score=38.22 Aligned_cols=94 Identities=13% Similarity=-0.036 Sum_probs=72.3
Q ss_pred HHHHHHccchhhHHHHHHHHHHCCCCCC--------h-----hHHHHHHHHHHHcCCHHHHHHHHHHhhhC-------CC
Q 047178 116 LLALEKEQQWHRVVQVIKWMLSKGQGST--------M-----GTCGQLIRALDMDHRAEEAHKFWEKRIGI-------DL 175 (287)
Q Consensus 116 i~~L~k~~~~~~A~qv~~~M~~~G~~pd--------~-----~TYnaLI~~y~K~G~leeA~~lF~eM~~~-------g~ 175 (287)
=..+.+.|++++|+..++.-++. .|+ . ..|+-+=.+|.+.|+.++|...|++-.+. +
T Consensus 18 G~~l~~~g~~eeAi~~Y~kAL~l--~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~- 94 (159)
T 2hr2_A 18 AQRQLVAGEYDEAAANCRRAMEI--SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELN- 94 (159)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH--HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTT-
T ss_pred HHHHHHCCCHHHHHHHHHHHHhh--CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCC-
Confidence 34467788999999988877653 233 2 28888889999999999999999988764 3
Q ss_pred CCCCh-hhH----HHHHHHHHHcCCHhHHHHHHHHHHH-----CCCCCC
Q 047178 176 HSVPW-QLC----KSMIAIYYRNNMLERLIKLFKGLEA-----FDRKPP 214 (287)
Q Consensus 176 ~sv~~-~ty----NsmIsgY~k~G~~eeA~~Lf~eM~~-----~Gi~PD 214 (287)
+++ ..| ...=.+|...|++++|+.-|++-.+ .|+.+.
T Consensus 95 --pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~ 141 (159)
T 2hr2_A 95 --QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPG 141 (159)
T ss_dssp --STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTT
T ss_pred --CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 233 357 7788899999999999999998753 456554
No 195
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=93.68 E-value=0.25 Score=35.27 Aligned_cols=56 Identities=13% Similarity=0.057 Sum_probs=36.8
Q ss_pred HHHHHcCCHHHHHHHHHHhhhCCCCCCChh-hHHHHHHHHHHcCCHhHHHHHHHHHHHC
Q 047178 152 RALDMDHRAEEAHKFWEKRIGIDLHSVPWQ-LCKSMIAIYYRNNMLERLIKLFKGLEAF 209 (287)
Q Consensus 152 ~~y~K~G~leeA~~lF~eM~~~g~~sv~~~-tyNsmIsgY~k~G~~eeA~~Lf~eM~~~ 209 (287)
..|.+.|++++|...|++....+- .... .|..+=..|.+.|++++|.+.|.+....
T Consensus 8 ~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 8 KELINQGDIENALQALEEFLQTEP--VGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCS--STHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCC--CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 445667777777777777765431 1223 5666666777777777777777776654
No 196
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=93.57 E-value=0.78 Score=45.14 Aligned_cols=59 Identities=19% Similarity=0.011 Sum_probs=41.3
Q ss_pred CChhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHcCCHhHHHHHHHHHHHCC
Q 047178 142 STMGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNNMLERLIKLFKGLEAFD 210 (287)
Q Consensus 142 pd~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~G~~eeA~~Lf~eM~~~G 210 (287)
.+...|..|=..+.+.|+++.|++.|.++.. |..+...|...|..++..++-+..+..|
T Consensus 679 ~~~~~W~~la~~al~~~~~~~A~~~y~~~~d----------~~~l~~l~~~~~~~~~~~~~~~~a~~~~ 737 (814)
T 3mkq_A 679 SAEMKWRALGDASLQRFNFKLAIEAFTNAHD----------LESLFLLHSSFNNKEGLVTLAKDAETTG 737 (814)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC----------HHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC----------hhhhHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 4566788888888889999999998887732 5556666666666666655555545444
No 197
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=93.32 E-value=1.2 Score=37.01 Aligned_cols=126 Identities=7% Similarity=-0.055 Sum_probs=96.5
Q ss_pred HHHHHHHHHHccchhhHHHHHHHHHHCCCCCChhHHHHHHHHHHHcC----CHHHHHHHHHHhhhCCCCCCChhhHHHHH
Q 047178 112 LKKALLALEKEQQWHRVVQVIKWMLSKGQGSTMGTCGQLIRALDMDH----RAEEAHKFWEKRIGIDLHSVPWQLCKSMI 187 (287)
Q Consensus 112 ~~~ai~~L~k~~~~~~A~qv~~~M~~~G~~pd~~TYnaLI~~y~K~G----~leeA~~lF~eM~~~g~~sv~~~tyNsmI 187 (287)
...+=..+...+++++|++.|+.-.+.| +...+..|=..|.. | +.++|.+.|++-.+.+. + ..+..|=
T Consensus 21 ~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g~---~-~a~~~Lg 92 (212)
T 3rjv_A 21 QYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAGS---K-SGEIVLA 92 (212)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTTC---H-HHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCCC---H-HHHHHHH
Confidence 3334445566789999999999988876 45566666666666 6 89999999999887763 2 2455566
Q ss_pred HHHHH----cCCHhHHHHHHHHHHHCCCCCChHHHHHHHHHHHHh----cCCHHHHHHHHHHHhHH
Q 047178 188 AIYYR----NNMLERLIKLFKGLEAFDRKPPEKSIVQRVADAYEV----LGLLEEKERVLEKYKDL 245 (287)
Q Consensus 188 sgY~k----~G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k----~G~leeA~~ll~~m~~l 245 (287)
..|.. .+++++|+++|.+-.+.|...+....+..|-..|.. .++.++|...+++...+
T Consensus 93 ~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~ 158 (212)
T 3rjv_A 93 RVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL 158 (212)
T ss_dssp HHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT
T ss_pred HHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc
Confidence 66666 789999999999988876433347778888888888 88999999999998665
No 198
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=93.14 E-value=0.62 Score=42.53 Aligned_cols=124 Identities=9% Similarity=0.044 Sum_probs=89.4
Q ss_pred HHHccchh--hHHHHHHHHHHCCCCCChhHHHHHHHHHHHcCC------HHHHHHHHHHhhhCCCCCCChhhHHHHHHHH
Q 047178 119 LEKEQQWH--RVVQVIKWMLSKGQGSTMGTCGQLIRALDMDHR------AEEAHKFWEKRIGIDLHSVPWQLCKSMIAIY 190 (287)
Q Consensus 119 L~k~~~~~--~A~qv~~~M~~~G~~pd~~TYnaLI~~y~K~G~------leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY 190 (287)
+.+.+.++ +++++++.|++... .|-..|+---..+.+.|+ ++++.+.++++...+. -+...|+-+-..+
T Consensus 154 l~~l~~~~~~~EL~~~~~~i~~d~-~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p--~n~SaW~y~~~ll 230 (306)
T 3dra_A 154 VDTFDLHNDAKELSFVDKVIDTDL-KNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCP--QNPSTWNYLLGIH 230 (306)
T ss_dssp HHHTTCTTCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCS--SCHHHHHHHHHHH
T ss_pred HHHhcccChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCC--CCccHHHHHHHHH
Confidence 45566777 88999999987543 355566554444555565 8999999999987653 3445788888888
Q ss_pred HHcCCHhH-HHHHHHHHHHCC-CCCChHHHHHHHHHHHHhcCCHHHHHHHHHHHhHH
Q 047178 191 YRNNMLER-LIKLFKGLEAFD-RKPPEKSIVQRVADAYEVLGLLEEKERVLEKYKDL 245 (287)
Q Consensus 191 ~k~G~~ee-A~~Lf~eM~~~G-i~PD~~~Ty~sLI~a~~k~G~leeA~~ll~~m~~l 245 (287)
.+.|+..+ +.+++.+....+ ..|.....+..+.+.|++.|+.++|.++++.....
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~ 287 (306)
T 3dra_A 231 ERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSK 287 (306)
T ss_dssp HHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhc
Confidence 89998555 555766665543 22333466788899999999999999999987653
No 199
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=93.05 E-value=0.38 Score=43.86 Aligned_cols=90 Identities=14% Similarity=0.023 Sum_probs=66.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCh---HHHHHHHHH
Q 047178 148 GQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNNMLERLIKLFKGLEAFDRKPPE---KSIVQRVAD 224 (287)
Q Consensus 148 naLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~G~~eeA~~Lf~eM~~~Gi~PD~---~~Ty~sLI~ 224 (287)
-.+...|...|++++|.++|+.+...+ +.+...-.+-..|.+.|++++|+..|..... .||. ...+..+-.
T Consensus 106 LayA~~L~~~g~y~eA~~~l~~~~~~~---p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~---~~d~~~~~~a~~~LG~ 179 (282)
T 4f3v_A 106 MGFAACEAAQGNYADAMEALEAAPVAG---SEHLVAWMKAVVYGAAERWTDVIDQVKSAGK---WPDKFLAGAAGVAHGV 179 (282)
T ss_dssp HHHHHHHHHHTCHHHHHHHHTSSCCTT---CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGG---CSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcC---CchHHHHHHHHHHHHcCCHHHHHHHHHHhhc---cCCcccHHHHHHHHHH
Confidence 345677889999999999999987644 2222344455688999999999999984433 2332 124566777
Q ss_pred HHHhcCCHHHHHHHHHHHh
Q 047178 225 AYEVLGLLEEKERVLEKYK 243 (287)
Q Consensus 225 a~~k~G~leeA~~ll~~m~ 243 (287)
++..+|++++|+..+++..
T Consensus 180 al~~LG~~~eAl~~l~~a~ 198 (282)
T 4f3v_A 180 AAANLALFTEAERRLTEAN 198 (282)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHh
Confidence 8999999999999998763
No 200
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=92.66 E-value=0.45 Score=33.83 Aligned_cols=59 Identities=15% Similarity=0.160 Sum_probs=48.4
Q ss_pred HHHHHHHcCCHhHHHHHHHHHHHCCCCCChHH-HHHHHHHHHHhcCCHHHHHHHHHHHhHHH
Q 047178 186 MIAIYYRNNMLERLIKLFKGLEAFDRKPPEKS-IVQRVADAYEVLGLLEEKERVLEKYKDLF 246 (287)
Q Consensus 186 mIsgY~k~G~~eeA~~Lf~eM~~~Gi~PD~~~-Ty~sLI~a~~k~G~leeA~~ll~~m~~l~ 246 (287)
.-..|.+.|++++|++.|++..+. .|+... .+..+-.+|...|++++|...+++...+.
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQT--EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH--CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 345678999999999999998875 465556 77888889999999999999998776554
No 201
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=92.08 E-value=2.3 Score=40.96 Aligned_cols=124 Identities=14% Similarity=0.101 Sum_probs=80.4
Q ss_pred HHHHHHHHccchhhHHHHHHHHHHCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHc
Q 047178 114 KALLALEKEQQWHRVVQVIKWMLSKGQGSTMGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRN 193 (287)
Q Consensus 114 ~ai~~L~k~~~~~~A~qv~~~M~~~G~~pd~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~ 193 (287)
..+..+.+.+..+.|..+|+.....+..+++....+.+...+ .+..+.|..+|+........ .+ ..|...|.-..+.
T Consensus 291 ~y~~~~~r~~~~~~AR~i~~~A~~~~~~~~v~i~~A~lE~~~-~~d~~~ar~ife~al~~~~~-~~-~~~~~yid~e~~~ 367 (493)
T 2uy1_A 291 NHLNYVLKKRGLELFRKLFIELGNEGVGPHVFIYCAFIEYYA-TGSRATPYNIFSSGLLKHPD-ST-LLKEEFFLFLLRI 367 (493)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHH-HCCSHHHHHHHHHHHHHCTT-CH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHhhCCCCChHHHHHHHHHHHHH-CCChHHHHHHHHHHHHHCCC-CH-HHHHHHHHHHHHc
Confidence 344445556778888888887721111112222234444433 23689999999988764321 12 2466677877888
Q ss_pred CCHhHHHHHHHHHHHCCCCCChHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHH
Q 047178 194 NMLERLIKLFKGLEAFDRKPPEKSIVQRVADAYEVLGLLEEKERVLEKYKDLF 246 (287)
Q Consensus 194 G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~G~leeA~~ll~~m~~l~ 246 (287)
|..+.|..+|+... + . ...+...++-=...|+.+.+..++++..+-+
T Consensus 368 ~~~~~aR~l~er~~----k-~-~~lw~~~~~fE~~~G~~~~~r~v~~~~~~~~ 414 (493)
T 2uy1_A 368 GDEENARALFKRLE----K-T-SRMWDSMIEYEFMVGSMELFRELVDQKMDAI 414 (493)
T ss_dssp TCHHHHHHHHHHSC----C-B-HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH----H-H-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh
Confidence 99999999999862 1 2 4667888876677799999999888776633
No 202
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=92.08 E-value=3.4 Score=32.09 Aligned_cols=110 Identities=9% Similarity=0.092 Sum_probs=76.6
Q ss_pred cchhhHHHHHHHHHHCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHH----cCCHhH
Q 047178 123 QQWHRVVQVIKWMLSKGQGSTMGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYR----NNMLER 198 (287)
Q Consensus 123 ~~~~~A~qv~~~M~~~G~~pd~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k----~G~~ee 198 (287)
++.++|++.|..-.+.|. ++ .+ |=..|...+.+++|.+.|++-.+.|. + ..++.|=..|.. .+++++
T Consensus 9 ~d~~~A~~~~~~aa~~g~-~~--a~--lg~~y~~g~~~~~A~~~~~~Aa~~g~---~-~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNE-MF--GC--LSLVSNSQINKQKLFQYLSKACELNS---G-NGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHTTC-TT--HH--HHHHTCTTSCHHHHHHHHHHHHHTTC---H-HHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHcCCC-Hh--hh--HHHHHHcCCCHHHHHHHHHHHHcCCC---H-HHHHHHHHHHHcCCCCCccHHH
Confidence 456677777777777773 33 23 44555566778889999998877653 1 245556666766 788999
Q ss_pred HHHHHHHHHHCCCCCChHHHHHHHHHHHHh----cCCHHHHHHHHHHHhHH
Q 047178 199 LIKLFKGLEAFDRKPPEKSIVQRVADAYEV----LGLLEEKERVLEKYKDL 245 (287)
Q Consensus 199 A~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k----~G~leeA~~ll~~m~~l 245 (287)
|+++|..-.+.|. | ..+..|-..|.. .+++++|...+++--.+
T Consensus 80 A~~~~~~Aa~~g~-~---~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 80 AAQYYSKACGLND-Q---DGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHHHHHHHHTTC-H---HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCC-H---HHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 9999999888875 2 335556667777 78899999888765443
No 203
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=89.52 E-value=6.1 Score=36.96 Aligned_cols=18 Identities=22% Similarity=0.252 Sum_probs=9.5
Q ss_pred cCCHhHHHHHHHHHHHCC
Q 047178 193 NNMLERLIKLFKGLEAFD 210 (287)
Q Consensus 193 ~G~~eeA~~Lf~eM~~~G 210 (287)
.|++++|+++|.+-.+.|
T Consensus 264 ~~d~~~A~~~~~~Aa~~g 281 (452)
T 3e4b_A 264 LGDVEQMMKYLDNGRAAD 281 (452)
T ss_dssp GCCHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHCC
Confidence 455555555555555444
No 204
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=88.91 E-value=1.6 Score=36.38 Aligned_cols=114 Identities=12% Similarity=0.037 Sum_probs=76.3
Q ss_pred HHHccchhhHHHHHHHHHHCCCCCChhHHHHHHHHHHHcCC----------HHHHHHHHHHhhhCCCCCCChhhHHHHHH
Q 047178 119 LEKEQQWHRVVQVIKWMLSKGQGSTMGTCGQLIRALDMDHR----------AEEAHKFWEKRIGIDLHSVPWQLCKSMIA 188 (287)
Q Consensus 119 L~k~~~~~~A~qv~~~M~~~G~~pd~~TYnaLI~~y~K~G~----------leeA~~lF~eM~~~g~~sv~~~tyNsmIs 188 (287)
+.+.+++++|++.++.-.+.. ..+...|+-+=.+|...|+ +++|...|++-.+.+- .....|+.+=+
T Consensus 12 ~~r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP--~~~~A~~~LG~ 88 (158)
T 1zu2_A 12 FDRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDP--KKDEAVWCIGN 88 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCT--TCHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCc--CcHHHHHHHHH
Confidence 456777888888887776642 2355666666666666655 5699999999887542 22346777888
Q ss_pred HHHHcC-----------CHhHHHHHHHHHHHCCCCCChHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHHhhhhc
Q 047178 189 IYYRNN-----------MLERLIKLFKGLEAFDRKPPEKSIVQRVADAYEVLGLLEEKERVLEKYKDLFTEKEK 251 (287)
Q Consensus 189 gY~k~G-----------~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~G~leeA~~ll~~m~~l~~~~~~ 251 (287)
+|...| ++++|++.|++-.+ +.|+. ..| ..+.++..+-++++.+.-+
T Consensus 89 ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~-~~y-------------~~al~~~~ka~el~~~~~~ 146 (158)
T 1zu2_A 89 AYTSFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDN-THY-------------LKSLEMTAKAPQLHAEAYK 146 (158)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTC-HHH-------------HHHHHHHHTHHHHHHHHHH
T ss_pred HHHHhcccCcchhhhhccHHHHHHHHHHHHH--hCCCC-HHH-------------HHHHHHHHhCHhccCcccc
Confidence 898774 89999999998876 46774 444 3444445555555554443
No 205
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=88.29 E-value=0.91 Score=37.90 Aligned_cols=88 Identities=11% Similarity=0.073 Sum_probs=65.3
Q ss_pred HHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHcCCH----------hHHHHHHHHHHHCCCCCChHHHHHHHH
Q 047178 154 LDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNNML----------ERLIKLFKGLEAFDRKPPEKSIVQRVA 223 (287)
Q Consensus 154 y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~G~~----------eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI 223 (287)
..+.+++++|.+.|++-.+.+- .+...|+.+=.++...|++ ++|+..|++-.+. .|+....|..+-
T Consensus 12 ~~r~~~feeA~~~~~~Ai~l~P--~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l--dP~~~~A~~~LG 87 (158)
T 1zu2_A 12 FDRILLFEQIRQDAENTYKSNP--LDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI--DPKKDEAVWCIG 87 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh--CcCcHHHHHHHH
Confidence 4577889999999999887542 2334566565677776654 5999999988764 566556788888
Q ss_pred HHHHhcC-----------CHHHHHHHHHHHhHH
Q 047178 224 DAYEVLG-----------LLEEKERVLEKYKDL 245 (287)
Q Consensus 224 ~a~~k~G-----------~leeA~~ll~~m~~l 245 (287)
.+|...| ++++|.+.|++..++
T Consensus 88 ~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 88 NAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcccCcchhhhhccHHHHHHHHHHHHHh
Confidence 8998875 899999998876655
No 206
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=88.06 E-value=21 Score=34.92 Aligned_cols=114 Identities=8% Similarity=-0.053 Sum_probs=84.2
Q ss_pred hhhHHHHHHHHHHCCCCCChhHHHHHHHHHHHcC--CHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHcC-CHhHHHH
Q 047178 125 WHRVVQVIKWMLSKGQGSTMGTCGQLIRALDMDH--RAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNN-MLERLIK 201 (287)
Q Consensus 125 ~~~A~qv~~~M~~~G~~pd~~TYnaLI~~y~K~G--~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~G-~~eeA~~ 201 (287)
+++++++++.+.+.. ..+..+|+----.+.+.| ++++|.+++++|.+.+. -....|+---..+.+.| ..+++++
T Consensus 89 ~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~--~N~~aW~~R~~~l~~l~~~~~~el~ 165 (567)
T 1dce_A 89 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADE--RNFHCWDYRRFVAAQAAVAPAEELA 165 (567)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhcc--ccccHHHHHHHHHHHcCCChHHHHH
Confidence 788999999988743 245566766666677888 77999999999998763 34456887777788889 8999999
Q ss_pred HHHHHHHCCCCCChHHHHHHHHHHHHhc--------------CCHHHHHHHHHHHh
Q 047178 202 LFKGLEAFDRKPPEKSIVQRVADAYEVL--------------GLLEEKERVLEKYK 243 (287)
Q Consensus 202 Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~--------------G~leeA~~ll~~m~ 243 (287)
.+.++.+.. |+....|+-.-..+.+. +.++++.+.+++..
T Consensus 166 ~~~~~I~~~--p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai 219 (567)
T 1dce_A 166 FTDSLITRN--FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAF 219 (567)
T ss_dssp HHHTTTTTT--CCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHC--CCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHH
Confidence 999998765 43346666665566553 55677777776544
No 207
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=87.07 E-value=5.2 Score=29.52 Aligned_cols=80 Identities=9% Similarity=-0.005 Sum_probs=52.5
Q ss_pred CChhHHHHHHHHHHHcCC---HHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChHHH
Q 047178 142 STMGTCGQLIRALDMDHR---AEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNNMLERLIKLFKGLEAFDRKPPEKSI 218 (287)
Q Consensus 142 pd~~TYnaLI~~y~K~G~---leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~G~~eeA~~Lf~eM~~~Gi~PD~~~T 218 (287)
.|...+..+-.++...+. .++|..+|++....+- ........+=..+.+.|++++|+..|..+.+..-. + ..
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp--~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~-~--~~ 78 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEP--YNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP-N--LD 78 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT-T--CC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCc--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-C--cc
Confidence 345556666666654443 6899999999877552 22234555567788999999999999999876533 2 22
Q ss_pred HHHHHHHH
Q 047178 219 VQRVADAY 226 (287)
Q Consensus 219 y~sLI~a~ 226 (287)
...|....
T Consensus 79 ~~~i~~~I 86 (93)
T 3bee_A 79 RVTIIESI 86 (93)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44555443
No 208
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=84.87 E-value=6.5 Score=28.95 Aligned_cols=69 Identities=13% Similarity=0.145 Sum_probs=45.6
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHhhhC---CC-CCCC-hhhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCh
Q 047178 145 GTCGQLIRALDMDHRAEEAHKFWEKRIGI---DL-HSVP-WQLCKSMIAIYYRNNMLERLIKLFKGLEAFDRKPPE 215 (287)
Q Consensus 145 ~TYnaLI~~y~K~G~leeA~~lF~eM~~~---g~-~sv~-~~tyNsmIsgY~k~G~~eeA~~Lf~eM~~~Gi~PD~ 215 (287)
.-+-.|=..+.+.|+.+.|...|++-... +- ..++ ...|..|-.+|.+.|++++|+.++++... +.|+.
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~--l~P~~ 79 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE--LDPEH 79 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTC
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh--cCCCC
Confidence 34555666677888888888888775432 10 0011 23577777888888888888888887765 46764
No 209
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=84.12 E-value=27 Score=32.46 Aligned_cols=79 Identities=13% Similarity=0.026 Sum_probs=44.4
Q ss_pred HcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHcC-----CHhHHHHHHHHHHHCCCCCChHHHHHHHHHHHHh--
Q 047178 156 MDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNN-----MLERLIKLFKGLEAFDRKPPEKSIVQRVADAYEV-- 228 (287)
Q Consensus 156 K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~G-----~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k-- 228 (287)
..|+.++|.+.|++-.+.|. + ..++.|=..|. .| ++++|+++|..-. .| ....+..|-..|..
T Consensus 263 ~~~d~~~A~~~~~~Aa~~g~---~-~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g----~~~A~~~Lg~~y~~G~ 332 (452)
T 3e4b_A 263 ELGDVEQMMKYLDNGRAADQ---P-RAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GR----EVAADYYLGQIYRRGY 332 (452)
T ss_dssp GGCCHHHHHHHHHHHHHTTC---H-HHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TT----CHHHHHHHHHHHHTTT
T ss_pred CCCCHHHHHHHHHHHHHCCC---H-HHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CC----CHHHHHHHHHHHHCCC
Confidence 46677777777777666552 1 23343444444 55 7777777777655 22 22334444444444
Q ss_pred --cCCHHHHHHHHHHHhH
Q 047178 229 --LGLLEEKERVLEKYKD 244 (287)
Q Consensus 229 --~G~leeA~~ll~~m~~ 244 (287)
..+.++|...+.+--.
T Consensus 333 g~~~d~~~A~~~~~~Aa~ 350 (452)
T 3e4b_A 333 LGKVYPQKALDHLLTAAR 350 (452)
T ss_dssp TSSCCHHHHHHHHHHHHT
T ss_pred CCCcCHHHHHHHHHHHHh
Confidence 2277777777766543
No 210
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=83.54 E-value=3.2 Score=38.71 Aligned_cols=75 Identities=12% Similarity=0.085 Sum_probs=59.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHcCCHhHHHHHHHHHH-----HCCCCCChHHHHHH
Q 047178 147 CGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNNMLERLIKLFKGLE-----AFDRKPPEKSIVQR 221 (287)
Q Consensus 147 YnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~G~~eeA~~Lf~eM~-----~~Gi~PD~~~Ty~s 221 (287)
...++..+...|+.++|..........+ +.....|-.+|.+|.+.|+..+|++.|+... +.|+.|.. .+ ..
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~--P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~-~l-~~ 249 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEH--PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGP-TL-RA 249 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCH-HH-HH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCH-HH-HH
Confidence 3456777889999999999988887654 3445679999999999999999999999874 46999985 43 44
Q ss_pred HHHH
Q 047178 222 VADA 225 (287)
Q Consensus 222 LI~a 225 (287)
|...
T Consensus 250 l~~~ 253 (388)
T 2ff4_A 250 LNER 253 (388)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4444
No 211
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=82.60 E-value=30 Score=32.59 Aligned_cols=117 Identities=4% Similarity=-0.066 Sum_probs=71.4
Q ss_pred cchhhHHHHHHHHHHCCCCCCh-hHHHHHHHHHH----HcC----CHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHc
Q 047178 123 QQWHRVVQVIKWMLSKGQGSTM-GTCGQLIRALD----MDH----RAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRN 193 (287)
Q Consensus 123 ~~~~~A~qv~~~M~~~G~~pd~-~TYnaLI~~y~----K~G----~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~ 193 (287)
....+|+.+|+..++. .|+- ..|..+--+|. ..+ .++.....+.........+.+..+|.++-..+.-.
T Consensus 213 ~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~a~~~~alal~~l~~ 290 (372)
T 3ly7_A 213 KSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVK 290 (372)
T ss_dssp HHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcCHHHHHHHHHHHHhC
Confidence 3457888888887763 4652 23332222221 111 11111222222111111123345677776666667
Q ss_pred CCHhHHHHHHHHHHHCCCCCChHHHHHHHHHHHHhcCCHHHHHHHHHHHhH
Q 047178 194 NMLERLIKLFKGLEAFDRKPPEKSIVQRVADAYEVLGLLEEKERVLEKYKD 244 (287)
Q Consensus 194 G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~G~leeA~~ll~~m~~ 244 (287)
|++++|...+++....+ |+ ...|..+-..+.-.|+.++|.+.+++...
T Consensus 291 gd~d~A~~~l~rAl~Ln--~s-~~a~~llG~~~~~~G~~~eA~e~~~~Alr 338 (372)
T 3ly7_A 291 GKTDESYQAINTGIDLE--MS-WLNYVLLGKVYEMKGMNREAADAYLTAFN 338 (372)
T ss_dssp TCHHHHHHHHHHHHHHC--CC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcC--CC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 99999999999999886 88 47777777788899999999999875443
No 212
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=82.32 E-value=6.9 Score=36.00 Aligned_cols=93 Identities=13% Similarity=0.056 Sum_probs=68.5
Q ss_pred hhHHHHHHHHHHHc-----CCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHc-CCHhHHHHHHHHHHHCCCC--CCh
Q 047178 144 MGTCGQLIRALDMD-----HRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRN-NMLERLIKLFKGLEAFDRK--PPE 215 (287)
Q Consensus 144 ~~TYnaLI~~y~K~-----G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~-G~~eeA~~Lf~eM~~~Gi~--PD~ 215 (287)
-..|.+|-..|.+. |+.++|+++|++-..-+-.. ..-++...-..||+. |+.++|.+.|++-...... |+.
T Consensus 199 GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~-~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~~P~~ 277 (301)
T 3u64_A 199 GAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAH-DPDHHITYADALCIPLNNRAGFDEALDRALAIDPESVPHN 277 (301)
T ss_dssp HHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTT-CSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGGCSSC
T ss_pred CHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCC-CchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCCh
Confidence 45789999999994 99999999999987643110 112355566778885 9999999999999998877 774
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhHHH
Q 047178 216 KSIVQRVADAYEVLGLLEEKERVLEKYKDLF 246 (287)
Q Consensus 216 ~~Ty~sLI~a~~k~G~leeA~~ll~~m~~l~ 246 (287)
... ..+.=.+|+.++++...+|
T Consensus 278 -~la--------n~~~q~eA~~LL~~~~d~F 299 (301)
T 3u64_A 278 -KLL--------VILSQKRARWLKAHVQDFF 299 (301)
T ss_dssp -HHH--------HHHHHHHHHHHHHTHHHHC
T ss_pred -hHH--------HHHHHHHHHHHHHHhHHhc
Confidence 322 2344578888888877665
No 213
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=81.33 E-value=9.7 Score=31.43 Aligned_cols=73 Identities=14% Similarity=0.030 Sum_probs=37.6
Q ss_pred HHHHHHCCCCCChhHHHHHHHHHHHcC---CHHHHHHHHHHhhhCCCCCC---ChhhHHHHHHHHHHcCCHhHHHHHHHH
Q 047178 132 IKWMLSKGQGSTMGTCGQLIRALDMDH---RAEEAHKFWEKRIGIDLHSV---PWQLCKSMIAIYYRNNMLERLIKLFKG 205 (287)
Q Consensus 132 ~~~M~~~G~~pd~~TYnaLI~~y~K~G---~leeA~~lF~eM~~~g~~sv---~~~tyNsmIsgY~k~G~~eeA~~Lf~e 205 (287)
+......|. ++..+---+=-+|++.. .+++|..+|++....+. + ....|+.= -||.+.|++++|.+.|+.
T Consensus 21 y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~--p~~~rd~lY~LA-v~~~kl~~Y~~A~~y~~~ 96 (152)
T 1pc2_A 21 FQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGS--KEEQRDYVFYLA-VGNYRLKEYEKALKYVRG 96 (152)
T ss_dssp HHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSC--HHHHHHHHHHHH-HHHHHTSCHHHHHHHHHH
T ss_pred HHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCC--ccchHHHHHHHH-HHHHHccCHHHHHHHHHH
Confidence 333333333 44445445555566655 45566666666655431 1 11345532 244666666666666666
Q ss_pred HHH
Q 047178 206 LEA 208 (287)
Q Consensus 206 M~~ 208 (287)
..+
T Consensus 97 lL~ 99 (152)
T 1pc2_A 97 LLQ 99 (152)
T ss_dssp HHH
T ss_pred HHh
Confidence 654
No 214
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=80.31 E-value=17 Score=30.31 Aligned_cols=55 Identities=15% Similarity=0.193 Sum_probs=25.5
Q ss_pred HHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChHHHHHHHHHHHHhcCCHHHHHHHHH
Q 047178 184 KSMIAIYYRNNMLERLIKLFKGLEAFDRKPPEKSIVQRVADAYEVLGLLEEKERVLE 240 (287)
Q Consensus 184 NsmIsgY~k~G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~G~leeA~~ll~ 240 (287)
+.-++.+...|.-|...++..++.. .-.|+. ...-.+-.||.+.|+..+|.+++.
T Consensus 95 d~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~-~~l~kia~Ay~Klg~~r~a~eLl~ 149 (172)
T 1wy6_A 95 NKALDILVIQGKRDKLEEIGREILK-NNEVSA-SILVAIANALRRVGDERDATTLLI 149 (172)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHC---CCSCH-HHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHhccHhHHHHHHHHHhc-cCCCCh-HHHHHHHHHHHHhcchhhHHHHHH
Confidence 3344445555555555555555322 122221 223444555555555555555554
No 215
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=79.61 E-value=19 Score=37.10 Aligned_cols=129 Identities=9% Similarity=-0.026 Sum_probs=80.7
Q ss_pred HHHHHHHHccc-hhhHHHHHHHHHHCCCCCChhHHHHHHHHHHHcCCHH-HHHHHHHHhhhC------CCCCCCh---hh
Q 047178 114 KALLALEKEQQ-WHRVVQVIKWMLSKGQGSTMGTCGQLIRALDMDHRAE-EAHKFWEKRIGI------DLHSVPW---QL 182 (287)
Q Consensus 114 ~ai~~L~k~~~-~~~A~qv~~~M~~~G~~pd~~TYnaLI~~y~K~G~le-eA~~lF~eM~~~------g~~sv~~---~t 182 (287)
.++..+...++ .+.|+.+|+.+.++.-.-++....++|..+.+.+.-| +|.++..+..+. ++...+. ..
T Consensus 253 ~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~ 332 (754)
T 4gns_B 253 SLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARL 332 (754)
T ss_dssp HHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHH
T ss_pred HHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccc
Confidence 34444444555 4678899998877532223333345566555554322 455555544321 1110110 01
Q ss_pred H---HHHHH----HHHHcCCHhHHHHHHHHHHHCCCCCChHHHHHHHHHHHHhcCCHHHHHHHHHHHhH
Q 047178 183 C---KSMIA----IYYRNNMLERLIKLFKGLEAFDRKPPEKSIVQRVADAYEVLGLLEEKERVLEKYKD 244 (287)
Q Consensus 183 y---NsmIs----gY~k~G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~G~leeA~~ll~~m~~ 244 (287)
. ..|++ -+-..|+++-|+++-+.-+. +.|++..||-.|..+|...|+++.|+-.++.++.
T Consensus 333 ~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~--~aPseF~tW~~La~vYi~l~d~e~ALLtLNScPm 399 (754)
T 4gns_B 333 MNCMSDLLNIQTNFLLNRGDYELALGVSNTSTE--LALDSFESWYNLARCHIKKEEYEKALFAINSMPR 399 (754)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSCC
T ss_pred cCcchHHHHHHHHHHhccCcHHHHHHHHHHHHh--cCchhhHHHHHHHHHHHHhccHHHHHHHHhcCCC
Confidence 1 12333 23457999999999988654 6799899999999999999999999999999874
No 216
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=78.74 E-value=26 Score=32.16 Aligned_cols=124 Identities=11% Similarity=0.066 Sum_probs=79.8
Q ss_pred HHHcc--chhhHHHHHHHHHHCCCCCChhHHHHHHHHHHHcCC-HHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHc--
Q 047178 119 LEKEQ--QWHRVVQVIKWMLSKGQGSTMGTCGQLIRALDMDHR-AEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRN-- 193 (287)
Q Consensus 119 L~k~~--~~~~A~qv~~~M~~~G~~pd~~TYnaLI~~y~K~G~-leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~-- 193 (287)
+.+.+ .+++++++++.|.+.. ..|-.+|+=---.+.+.|. .+++.+.++++.+.+. -+...|+-.-..+.+.
T Consensus 118 L~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p--~N~SAW~~R~~ll~~l~~ 194 (331)
T 3dss_A 118 LSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF--SNYSSWHYRSCLLPQLHP 194 (331)
T ss_dssp HHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCS--CCHHHHHHHHHHHHHHSC
T ss_pred HhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHhhh
Confidence 33444 4788899998888753 2455666655555667777 6899999999988763 2334566555555544
Q ss_pred ------------CCHhHHHHHHHHHHHCCCCCChHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHhHHHh
Q 047178 194 ------------NMLERLIKLFKGLEAFDRKPPEKSIVQRVADAYEVL-----------GLLEEKERVLEKYKDLFT 247 (287)
Q Consensus 194 ------------G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~-----------G~leeA~~ll~~m~~l~~ 247 (287)
+.++++++.+...... .|+....|+=+--.+.+. +.++++.+.++++.++.-
T Consensus 195 ~~~~~~~~~~~~~~~~eEle~~~~ai~~--~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~p 269 (331)
T 3dss_A 195 QPDSGPQGRLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEP 269 (331)
T ss_dssp CC------CCCHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCT
T ss_pred ccccccccccchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCc
Confidence 5678899999888764 465556555333333333 456777777766665544
No 217
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=78.60 E-value=12 Score=34.77 Aligned_cols=117 Identities=10% Similarity=0.008 Sum_probs=78.4
Q ss_pred hHHHHHHHHHHCCCCCChhHHHHHHHHHHHcCC-------HHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHcCCH---
Q 047178 127 RVVQVIKWMLSKGQGSTMGTCGQLIRALDMDHR-------AEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNNML--- 196 (287)
Q Consensus 127 ~A~qv~~~M~~~G~~pd~~TYnaLI~~y~K~G~-------leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~G~~--- 196 (287)
++++..+.+++... -|...|+-.-..+.+.|+ ++++.+.+++....+. -+...|+-+-..+.+.|+.
T Consensus 185 eELe~~~k~I~~dp-~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P--~n~SaW~Ylr~Ll~~~~~~~~~ 261 (349)
T 3q7a_A 185 SELDWCNEMLRVDG-RNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIP--HNVSAWNYLRGFLKHFSLPLVP 261 (349)
T ss_dssp HHHHHHHHHHHHCT-TCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCCSGG
T ss_pred HHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHhcCCCccc
Confidence 88899998887643 466677777666777776 7899999999887652 2445688777777777764
Q ss_pred -----------------hHHHHHHHHHHHCC----CCCChHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHH
Q 047178 197 -----------------ERLIKLFKGLEAFD----RKPPEKSIVQRVADAYEVLGLLEEKERVLEKYKDLF 246 (287)
Q Consensus 197 -----------------eeA~~Lf~eM~~~G----i~PD~~~Ty~sLI~a~~k~G~leeA~~ll~~m~~l~ 246 (287)
.+..++..++...+ ..+........|.+.|+..|..++|.++++.+.+-+
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~ 332 (349)
T 3q7a_A 262 ILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEY 332 (349)
T ss_dssp GHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred ccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhh
Confidence 44555555554432 112224667888999999999999999998875443
No 218
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=78.14 E-value=19 Score=35.12 Aligned_cols=23 Identities=9% Similarity=0.106 Sum_probs=13.3
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHH
Q 047178 183 CKSMIAIYYRNNMLERLIKLFKG 205 (287)
Q Consensus 183 yNsmIsgY~k~G~~eeA~~Lf~e 205 (287)
|+.-..+|.+.|++++|++++.+
T Consensus 739 ~~~A~~~~~~~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 739 FNLAFNAYWIAGDIQGAKDLLIK 761 (814)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred hHHHHHHHHHcCCHHHHHHHHHH
Confidence 45555556666666666666554
No 219
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=77.47 E-value=32 Score=29.05 Aligned_cols=50 Identities=20% Similarity=0.119 Sum_probs=27.6
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 047178 183 CKSMIAIYYRNNMLERLIKLFKGLEAFDRKPPEKSIVQRVADAYEVLGLLEEKERVLEKY 242 (287)
Q Consensus 183 yNsmIsgY~k~G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~G~leeA~~ll~~m 242 (287)
||.-...|--.|++++++++|. +.|-.|.. ..+ ....|.-+.|.++++++
T Consensus 92 ~n~af~~~l~lGdv~~~i~lL~---~~~r~~eA-~~~------A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 92 FGSMLLNTFYNNSTKERSSIFA---EGGSLPLA-YAV------AKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHH---HTTCHHHH-HHH------HHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHH---HCCChHHH-HHH------HHHcCcHHHHHHHHHHh
Confidence 5655666666777777777764 34544532 211 11245666666666554
No 220
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=76.85 E-value=16 Score=26.76 Aligned_cols=65 Identities=9% Similarity=-0.057 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHccchhhHHHHHHHHHHCC------CCCChhHHHHHHHHHHHcCCHHHHHHHHHHhhhC
Q 047178 109 VGSLKKALLALEKEQQWHRVVQVIKWMLSKG------QGSTMGTCGQLIRALDMDHRAEEAHKFWEKRIGI 173 (287)
Q Consensus 109 ~~s~~~ai~~L~k~~~~~~A~qv~~~M~~~G------~~pd~~TYnaLI~~y~K~G~leeA~~lF~eM~~~ 173 (287)
..++..+=..+.+.+++.+|..-+....+.- -.+....|..|-.+|.+.|++++|..++++....
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 3444445556677888888877776655421 1234567899999999999999999999998764
No 221
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=72.76 E-value=22 Score=33.89 Aligned_cols=90 Identities=10% Similarity=-0.010 Sum_probs=58.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhH--HHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChHHHHHHHHH
Q 047178 147 CGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLC--KSMIAIYYRNNMLERLIKLFKGLEAFDRKPPEKSIVQRVAD 224 (287)
Q Consensus 147 YnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~ty--NsmIsgY~k~G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~ 224 (287)
|-..++.+-+.|.++.|..+|+.....+ .....| .+.+.-.+ .+.++.|..+|+.....- |+....+...++
T Consensus 289 w~~y~~~~~r~~~~~~AR~i~~~A~~~~---~~~~v~i~~A~lE~~~-~~d~~~ar~ife~al~~~--~~~~~~~~~yid 362 (493)
T 2uy1_A 289 RINHLNYVLKKRGLELFRKLFIELGNEG---VGPHVFIYCAFIEYYA-TGSRATPYNIFSSGLLKH--PDSTLLKEEFFL 362 (493)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHTTSC---CCHHHHHHHHHHHHHH-HCCSHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHhhCCC---CChHHHHHHHHHHHHH-CCChHHHHHHHHHHHHHC--CCCHHHHHHHHH
Confidence 4444555556788999999999882111 111122 23333322 336999999999887642 443333556677
Q ss_pred HHHhcCCHHHHHHHHHHH
Q 047178 225 AYEVLGLLEEKERVLEKY 242 (287)
Q Consensus 225 a~~k~G~leeA~~ll~~m 242 (287)
-..+.|+.+.|+.+++..
T Consensus 363 ~e~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 363 FLLRIGDEENARALFKRL 380 (493)
T ss_dssp HHHHHTCHHHHHHHHHHS
T ss_pred HHHHcCCHHHHHHHHHHH
Confidence 777889999999888764
No 222
>1uzc_A Hypothetical protein FLJ21157; nuclear protein, structure, transcription, phosphopeptide recognition, RNA polymerase II carboxyl- terminal domain; NMR {Homo sapiens} SCOP: a.159.2.1 PDB: 2kzg_A 2lks_A 2l9v_A
Probab=70.86 E-value=2.2 Score=30.99 Aligned_cols=55 Identities=13% Similarity=-0.014 Sum_probs=36.0
Q ss_pred HhHHHHHHHHHH-HCCCCCChHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHHhhhhccc
Q 047178 196 LERLIKLFKGLE-AFDRKPPEKSIVQRVADAYEVLGLLEEKERVLEKYKDLFTEKEKRS 253 (287)
Q Consensus 196 ~eeA~~Lf~eM~-~~Gi~PD~~~Ty~sLI~a~~k~G~leeA~~ll~~m~~l~~~~~~~~ 253 (287)
.++|.+.|.+|. +.+|.|+ .||.-++..++..-++. |..-..+=.++|++||..+
T Consensus 14 ~eea~~~F~~LL~e~~V~~~--~tWe~~~~~i~~DpRY~-al~~~~eRk~~F~ey~~~r 69 (71)
T 1uzc_A 14 KEEAKQAFKELLKEKRVPSN--ASWEQAMKMIINDPRYS-ALAKLSEKKQAFNAYKVQT 69 (71)
T ss_dssp HHHHHHHHHHHHHHTTCCTT--CCHHHHHHHHHTSGGGG-GCSSHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHcCcCCC--CCHHHHHHHHccCcccc-ccCCHHHHHHHHHHHHHHh
Confidence 578888888886 5688887 56888888777655443 2222334466677777543
No 223
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=66.96 E-value=40 Score=25.71 Aligned_cols=81 Identities=12% Similarity=0.140 Sum_probs=61.3
Q ss_pred chhhHHHHHHHHHHCCCCCChhHHHHHHHHHHH----cCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHH----cCC
Q 047178 124 QWHRVVQVIKWMLSKGQGSTMGTCGQLIRALDM----DHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYR----NNM 195 (287)
Q Consensus 124 ~~~~A~qv~~~M~~~G~~pd~~TYnaLI~~y~K----~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k----~G~ 195 (287)
.+.+|++.|..-.+.| +...+..|=..|.. .++.++|.+.|++-.+.|. + ..+..|=..|.. .++
T Consensus 40 ~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~-~a~~~Lg~~y~~G~g~~~d 112 (138)
T 1klx_A 40 NKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLND---Q-DGCLILGYKQYAGKGVVKN 112 (138)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTC---H-HHHHHHHHHHHHTSSSCCC
T ss_pred CHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCCC---H-HHHHHHHHHHHCCCCCCcC
Confidence 3445777777666654 45666777677777 8899999999999988764 2 245667777777 889
Q ss_pred HhHHHHHHHHHHHCCC
Q 047178 196 LERLIKLFKGLEAFDR 211 (287)
Q Consensus 196 ~eeA~~Lf~eM~~~Gi 211 (287)
+++|+++|+.-.+.|.
T Consensus 113 ~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 113 EKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHCCC
Confidence 9999999999888875
No 224
>2dod_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=65.09 E-value=3.9 Score=30.50 Aligned_cols=54 Identities=17% Similarity=0.033 Sum_probs=37.5
Q ss_pred HhHHHHHHHHHH-HCCCCCChHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHHhhhhccc
Q 047178 196 LERLIKLFKGLE-AFDRKPPEKSIVQRVADAYEVLGLLEEKERVLEKYKDLFTEKEKRS 253 (287)
Q Consensus 196 ~eeA~~Lf~eM~-~~Gi~PD~~~Ty~sLI~a~~k~G~leeA~~ll~~m~~l~~~~~~~~ 253 (287)
.++|...|.+|. +.||.|+ .||...|...+..-++.-- . ..+=.+.|++||..+
T Consensus 16 ~eea~~~Fk~LL~e~~V~p~--~tWe~~~~~i~~DpRY~aL-~-~~eRK~~F~~y~~~r 70 (82)
T 2dod_A 16 LEARMKQFKDMLLERGVSAF--STWEKELHKIVFDPRYLLL-N-PKERKQVFDQYVKTR 70 (82)
T ss_dssp HHHHHHHHHHHHHHTTCCSS--SCHHHHHHHHHTCSGGGTS-C-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCcCCC--CCHHHHHHHHccCCccccC-C-HHHHHHHHHHHHHHH
Confidence 578888888886 5788887 5688888877776555432 3 455577777777543
No 225
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=64.01 E-value=19 Score=29.63 Aligned_cols=81 Identities=10% Similarity=-0.036 Sum_probs=46.9
Q ss_pred HHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHcC---CHhHHHHHHHHHHHCCCCC---ChHHHHHHHHHHHHhcCCHH
Q 047178 160 AEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNN---MLERLIKLFKGLEAFDRKP---PEKSIVQRVADAYEVLGLLE 233 (287)
Q Consensus 160 leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~G---~~eeA~~Lf~eM~~~Gi~P---D~~~Ty~sLI~a~~k~G~le 233 (287)
+..+++-|.+....|. ++..+.-.+=.++++.. .+++++.+|.+....+ .| .+ ..|+.-+ +|.+.|+++
T Consensus 14 l~~~~~~y~~e~~~~~--~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd-~lY~LAv-~~~kl~~Y~ 88 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS--VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRD-YVFYLAV-GNYRLKEYE 88 (152)
T ss_dssp HHHHHHHHHHHHHTTC--CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHH-HHHHHHH-HHHHTSCHH
T ss_pred HHHHHHHHHHHHccCC--CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHH-HHHHHHH-HHHHccCHH
Confidence 4556666666555443 23323223445667766 5557777777777665 23 11 3455444 667778888
Q ss_pred HHHHHHHHHhHH
Q 047178 234 EKERVLEKYKDL 245 (287)
Q Consensus 234 eA~~ll~~m~~l 245 (287)
+|++.++...++
T Consensus 89 ~A~~y~~~lL~i 100 (152)
T 1pc2_A 89 KALKYVRGLLQT 100 (152)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc
Confidence 777777755444
No 226
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=63.08 E-value=24 Score=33.30 Aligned_cols=73 Identities=8% Similarity=0.089 Sum_probs=55.9
Q ss_pred CCChhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChHHHH
Q 047178 141 GSTMGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNNMLERLIKLFKGLEAFDRKPPEKSIV 219 (287)
Q Consensus 141 ~pd~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~G~~eeA~~Lf~eM~~~Gi~PD~~~Ty 219 (287)
..+..+|.++--.+...|++++|...+++....+ +++..|..+=..|.-.|++++|.+.|.+-... .|.. -||
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln---~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~-~t~ 346 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE---MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGA-NTL 346 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSH-HHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCc-ChH
Confidence 4577788888777777799999999999998875 34555655556778899999999999876654 4653 444
No 227
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=62.58 E-value=86 Score=28.04 Aligned_cols=167 Identities=6% Similarity=-0.028 Sum_probs=98.5
Q ss_pred CCCcccHHHHHHHHH---ccCCCcchHHHHHHHHHHccCCC-CHHHHHHHHHHHHHcc--chhhHHHHHHHHHHCCCCCC
Q 047178 70 VPRKDKINFLVNTLL---DLKNSKEDVYGTLDAWVAWEQNF-PVGSLKKALLALEKEQ--QWHRVVQVIKWMLSKGQGST 143 (287)
Q Consensus 70 ~s~~~~~~~Li~~l~---~lg~~~~~v~~~Ld~~~~~~~~~-~~~s~~~ai~~L~k~~--~~~~A~qv~~~M~~~G~~pd 143 (287)
|.|.+....+.+.+. +.+.-.+.+....+......-.+ ++..+. =..|...+ .+++++++++.++...- .+
T Consensus 26 i~y~~~y~~~~~~~~a~~~~~e~s~~aL~~t~~~L~~nP~~~taWn~R--~~~L~~l~~~~~~eeL~~~~~~L~~nP-k~ 102 (306)
T 3dra_A 26 ILYDEDYKQIMGLLLALMKAEEYSERALHITELGINELASHYTIWIYR--FNILKNLPNRNLYDELDWCEEIALDNE-KN 102 (306)
T ss_dssp CCCCHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHH--HHHHHTCTTSCHHHHHHHHHHHHHHCT-TC
T ss_pred eeeCHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCcHHHHHHHHH--HHHHHHcccccHHHHHHHHHHHHHHCc-cc
Confidence 566666565555544 34444444444444433322222 222222 12334455 88999999998887422 23
Q ss_pred hhHHHHHHHHH----HHc---CCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHcCCHh--HHHHHHHHHHHCCCCCC
Q 047178 144 MGTCGQLIRAL----DMD---HRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNNMLE--RLIKLFKGLEAFDRKPP 214 (287)
Q Consensus 144 ~~TYnaLI~~y----~K~---G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~G~~e--eA~~Lf~eM~~~Gi~PD 214 (287)
..+|+---..+ .+. ++.+++.++++++.+.+- -+-..|+----.+.+.|.++ ++++.+..|.+....-
T Consensus 103 y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~p--kny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N- 179 (306)
T 3dra_A 103 YQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDP--KNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKN- 179 (306)
T ss_dssp CHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTC-
T ss_pred HHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCC-
Confidence 33454322222 444 789999999999988653 23346776667778888888 9999999999876543
Q ss_pred hHHHHHHHHHHHHhcCC------HHHHHHHHHHHh
Q 047178 215 EKSIVQRVADAYEVLGL------LEEKERVLEKYK 243 (287)
Q Consensus 215 ~~~Ty~sLI~a~~k~G~------leeA~~ll~~m~ 243 (287)
...|+----.+...|. ++++.+..++..
T Consensus 180 -~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI 213 (306)
T 3dra_A 180 -NSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKI 213 (306)
T ss_dssp -HHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHhccccchhhhHHHHHHHHHHHH
Confidence 3445443444555565 777776665433
No 228
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=62.44 E-value=1.2e+02 Score=29.49 Aligned_cols=113 Identities=9% Similarity=-0.015 Sum_probs=76.8
Q ss_pred hhhHHHHHHHHHHCCCCCCh-hHHHHHHHHHHHcCC----------HHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHc
Q 047178 125 WHRVVQVIKWMLSKGQGSTM-GTCGQLIRALDMDHR----------AEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRN 193 (287)
Q Consensus 125 ~~~A~qv~~~M~~~G~~pd~-~TYnaLI~~y~K~G~----------leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~ 193 (287)
-++|++.++.+++. .|+. .+|+--=..+.+.|+ +++|.++++++...+- ..-.+|+---..+.+.
T Consensus 45 ~eeal~~~~~~l~~--nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~p--K~y~aW~hR~w~l~~l 120 (567)
T 1dce_A 45 DESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP--KSYGTWHHRCWLLSRL 120 (567)
T ss_dssp SHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHH--CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHc
Confidence 34667777777763 3433 335443333334445 8999999999988653 2334677666777888
Q ss_pred C--CHhHHHHHHHHHHHCCCCCChHHHHHHHHHHHHhcC-CHHHHHHHHHHHh
Q 047178 194 N--MLERLIKLFKGLEAFDRKPPEKSIVQRVADAYEVLG-LLEEKERVLEKYK 243 (287)
Q Consensus 194 G--~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~G-~leeA~~ll~~m~ 243 (287)
| ++++|+++++.|.+...+ ....|+----.+.+.| ..+++.+..+++.
T Consensus 121 ~~~~~~~el~~~~k~l~~d~~--N~~aW~~R~~~l~~l~~~~~~el~~~~~~I 171 (567)
T 1dce_A 121 PEPNWARELELCARFLEADER--NFHCWDYRRFVAAQAAVAPAEELAFTDSLI 171 (567)
T ss_dssp SSCCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTCCCHHHHHHHHHTTT
T ss_pred ccccHHHHHHHHHHHHhhccc--cccHHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence 9 669999999999987644 3455665555677788 7888887766543
No 229
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=62.29 E-value=26 Score=27.65 Aligned_cols=62 Identities=10% Similarity=0.097 Sum_probs=28.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHcCC--HhHHHHHHHHHHHCCC
Q 047178 148 GQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNNM--LERLIKLFKGLEAFDR 211 (287)
Q Consensus 148 naLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~G~--~eeA~~Lf~eM~~~Gi 211 (287)
+.+|.-|...|+++||.+.++++....+ -+.+.+..+..++=+.+. -+.+..|+..+...|+
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~~p~f--~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~ 74 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELEVPHF--HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSST 74 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGG--HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCCcc--HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCC
Confidence 4455555555555555555555532111 112234444444444321 2445555555555554
No 230
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=60.40 E-value=53 Score=27.40 Aligned_cols=68 Identities=6% Similarity=-0.071 Sum_probs=51.4
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCC
Q 047178 143 TMGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNNMLERLIKLFKGLEAFDRK 212 (287)
Q Consensus 143 d~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~G~~eeA~~Lf~eM~~~Gi~ 212 (287)
+..-.+.-|+.+...|+-|+-.++..++...... .|.. .=.+=++|.+.|...+|-+|+.+--+.|++
T Consensus 90 ~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~-~~~~-l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 90 LNEHVNKALDILVIQGKRDKLEEIGREILKNNEV-SASI-LVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCS-CHHH-HHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCC-ChHH-HHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 4445677789999999999999999986443321 2322 334678999999999999999999999985
No 231
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=56.06 E-value=48 Score=30.60 Aligned_cols=171 Identities=15% Similarity=0.072 Sum_probs=98.1
Q ss_pred cccHHHHHHHHHccCCCcchHHHHHHHHHHccCCCC---HHHHHHHHHHHHHcc-chhhHHHHHHHHHHCCCC-------
Q 047178 73 KDKINFLVNTLLDLKNSKEDVYGTLDAWVAWEQNFP---VGSLKKALLALEKEQ-QWHRVVQVIKWMLSKGQG------- 141 (287)
Q Consensus 73 ~~~~~~Li~~l~~lg~~~~~v~~~Ld~~~~~~~~~~---~~s~~~ai~~L~k~~-~~~~A~qv~~~M~~~G~~------- 141 (287)
.+|...|...|..........-..++. -|++..+ ..++...|..|.+.= .....-..+......|+.
T Consensus 32 ~~k~~~LL~~L~~~~g~~vsr~~L~~~--lW~~~~~~~a~~~L~~~i~rLRk~L~~~~~~~~~i~~~~~~GY~l~~~~~~ 109 (388)
T 2ff4_A 32 TPKQRAVLAMLVINRNRPVGVDALITA--LWEEWPPSGARASIHSYVSNLRKLLGGAGIDPRVVLAAAPPGYRLSIPDNT 109 (388)
T ss_dssp SHHHHHHHHHHHHTTTSEEEHHHHHHH--HHTTCCCTTHHHHHHHHHHHHHHHHGGGTSCHHHHEEECSSEEEECCCGGG
T ss_pred ChHHHHHHHHHHhCCCCcccHHHHHHH--hCCCCCChhHHHHHHHHHHHHHHhhcccCCCCceEEEEECCEEEEcCCCcc
Confidence 455566777766553322222122222 2555442 455666666665431 110000001000112221
Q ss_pred CChhHHHHHHHHHH---HcCCHHHHHHHHHHhhh--CC-----CCCCChh-------------hHHHHHHHHHHcCCHhH
Q 047178 142 STMGTCGQLIRALD---MDHRAEEAHKFWEKRIG--ID-----LHSVPWQ-------------LCKSMIAIYYRNNMLER 198 (287)
Q Consensus 142 pd~~TYnaLI~~y~---K~G~leeA~~lF~eM~~--~g-----~~sv~~~-------------tyNsmIsgY~k~G~~ee 198 (287)
-|+..|..++..-. ..|+.++|.+.+.+... +| +...+|. ....++..+...|++++
T Consensus 110 ~D~~~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~ 189 (388)
T 2ff4_A 110 CDLGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASA 189 (388)
T ss_dssp BHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred chHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
Confidence 24445666655432 35788888888887654 22 1011231 23356778889999999
Q ss_pred HHHHHHHHHHCCCCCChHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHHh
Q 047178 199 LIKLFKGLEAFDRKPPEKSIVQRVADAYEVLGLLEEKERVLEKYKDLFT 247 (287)
Q Consensus 199 A~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~G~leeA~~ll~~m~~l~~ 247 (287)
|+..+..+.... .-|+ ..|..++.+|...|+..+|.+.++.+...+.
T Consensus 190 a~~~l~~~~~~~-P~~E-~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~ 236 (388)
T 2ff4_A 190 VIAELEALTFEH-PYRE-PLWTQLITAYYLSDRQSDALGAYRRVKTTLA 236 (388)
T ss_dssp HHHHHHHHHHHS-TTCH-HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 999998887543 2255 6799999999999999999999988766554
No 232
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=55.96 E-value=32 Score=31.53 Aligned_cols=84 Identities=12% Similarity=0.056 Sum_probs=60.0
Q ss_pred CHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHc-----CCHhHHHHHHHHHHHCCCCCCh-HHHHHHHHHHHHhc-CC
Q 047178 159 RAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRN-----NMLERLIKLFKGLEAFDRKPPE-KSIVQRVADAYEVL-GL 231 (287)
Q Consensus 159 ~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~-----G~~eeA~~Lf~eM~~~Gi~PD~-~~Ty~sLI~a~~k~-G~ 231 (287)
.+.+|..++++..+-+-....-..|.+|-..|.+. |..++|.+.|++-.+-. |+. .-++...-+.+|.. |+
T Consensus 178 ~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~Ln--P~~~id~~v~YA~~l~~~~gd 255 (301)
T 3u64_A 178 TVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYC--SAHDPDHHITYADALCIPLNN 255 (301)
T ss_dssp HHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHC--CTTCSHHHHHHHHHTTTTTTC
T ss_pred hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhC--CCCCchHHHHHHHHHHHhcCC
Confidence 35677777887776541100123699999999995 99999999999987643 321 23355666778884 99
Q ss_pred HHHHHHHHHHHhH
Q 047178 232 LEEKERVLEKYKD 244 (287)
Q Consensus 232 leeA~~ll~~m~~ 244 (287)
.+++.+.+++...
T Consensus 256 ~~~a~~~L~kAL~ 268 (301)
T 3u64_A 256 RAGFDEALDRALA 268 (301)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc
Confidence 9999999987654
No 233
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=55.21 E-value=1.1e+02 Score=28.72 Aligned_cols=129 Identities=10% Similarity=0.069 Sum_probs=81.9
Q ss_pred HHHHHHHHHccCCCcchHHHHHHHHHHccC---C-CCHHHH-HHHHHHHHHccchhhHHHHHHHHHHCCCCCC-----hh
Q 047178 76 INFLVNTLLDLKNSKEDVYGTLDAWVAWEQ---N-FPVGSL-KKALLALEKEQQWHRVVQVIKWMLSKGQGST-----MG 145 (287)
Q Consensus 76 ~~~Li~~l~~lg~~~~~v~~~Ld~~~~~~~---~-~~~~s~-~~ai~~L~k~~~~~~A~qv~~~M~~~G~~pd-----~~ 145 (287)
.+.|++.+...++.....+....+.++|.. . |-...+ .++...+...|++.+|+.++..+.+.=-..| +.
T Consensus 61 v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~lle 140 (394)
T 3txn_A 61 VRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVE 140 (394)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHH
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHH
Confidence 345777777777766666766666555533 1 111122 2678889999999999999988876321222 23
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhhhC--CCCCCChh-----hHHHHHHHHH-HcCCHhHHHHHHHHH
Q 047178 146 TCGQLIRALDMDHRAEEAHKFWEKRIGI--DLHSVPWQ-----LCKSMIAIYY-RNNMLERLIKLFKGL 206 (287)
Q Consensus 146 TYnaLI~~y~K~G~leeA~~lF~eM~~~--g~~sv~~~-----tyNsmIsgY~-k~G~~eeA~~Lf~eM 206 (287)
+|-.-+..|...|++..|...+.+-... .+.++|.+ .++-++ +. ..+++.+|...|-+-
T Consensus 141 v~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~~~~Gi~--~l~~~rdyk~A~~~F~ea 207 (394)
T 3txn_A 141 VQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALDLQSGIL--HAADERDFKTAFSYFYEA 207 (394)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH--HHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHhhHH--HHHhccCHHHHHHHHHHH
Confidence 4666788899999999999988775321 11112221 133332 23 578899998888765
No 234
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=54.36 E-value=12 Score=26.19 Aligned_cols=28 Identities=11% Similarity=-0.019 Sum_probs=16.4
Q ss_pred hHHHHHHHHHH-HCCCCCChHHHHHHHHHHH
Q 047178 197 ERLIKLFKGLE-AFDRKPPEKSIVQRVADAY 226 (287)
Q Consensus 197 eeA~~Lf~eM~-~~Gi~PD~~~Ty~sLI~a~ 226 (287)
++|.+.|.+|. +.+|.|+ -||.-+|..+
T Consensus 3 eEae~aF~~lL~~~~V~s~--wsweqamr~i 31 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVDST--WSFSRIISEL 31 (59)
T ss_dssp THHHHHHHHHHHHTTCCSS--CCHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCCC--CcHHHHHHHh
Confidence 45666666554 4566665 3466666665
No 235
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=54.13 E-value=24 Score=28.77 Aligned_cols=63 Identities=5% Similarity=-0.095 Sum_probs=29.9
Q ss_pred HHHHHHHHHHccchhhHHHHHHHHHHCCCCCChhHHHHHHHHHHHcCC--HHHHHHHHHHhhhCCC
Q 047178 112 LKKALLALEKEQQWHRVVQVIKWMLSKGQGSTMGTCGQLIRALDMDHR--AEEAHKFWEKRIGIDL 175 (287)
Q Consensus 112 ~~~ai~~L~k~~~~~~A~qv~~~M~~~G~~pd~~TYnaLI~~y~K~G~--leeA~~lF~eM~~~g~ 175 (287)
+..++..|...+..++|.+.++++..- .....+++.++..++-+.+. .+.+..|+..+...++
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p-~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~ 76 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVP-HFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSST 76 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCG-GGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCC-cchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCC
Confidence 344555555556666665555554211 11123444555555554322 3344455555555544
No 236
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=52.62 E-value=71 Score=25.35 Aligned_cols=64 Identities=14% Similarity=0.059 Sum_probs=32.3
Q ss_pred CChhHHHHHHHHHHHcCCHHH---HHHHHHHhhhCCCCCCC---hhhHHHHHHHHHHcCCHhHHHHHHHHHHH
Q 047178 142 STMGTCGQLIRALDMDHRAEE---AHKFWEKRIGIDLHSVP---WQLCKSMIAIYYRNNMLERLIKLFKGLEA 208 (287)
Q Consensus 142 pd~~TYnaLI~~y~K~G~lee---A~~lF~eM~~~g~~sv~---~~tyNsmIsgY~k~G~~eeA~~Lf~eM~~ 208 (287)
++..|---+--+|.+....++ +..++++....+- +. ...|. |=-||.|.|++++|.+.++.+.+
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~--p~~~Rd~lY~-LAvg~yklg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGS--KEEQRDYVFY-LAVGNYRLKEYEKALKYVRGLLQ 102 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSC--HHHHHHHHHH-HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCC--cchHHHHHHH-HHHHHHHhhhHHHHHHHHHHHHH
Confidence 444444444445555555444 6666666554421 10 12333 22356666666666666666655
No 237
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=52.12 E-value=38 Score=26.60 Aligned_cols=79 Identities=13% Similarity=0.027 Sum_probs=56.0
Q ss_pred chhhHHHHHHHHHHCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHcCCHhHHHHHH
Q 047178 124 QWHRVVQVIKWMLSKGQGSTMGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNNMLERLIKLF 203 (287)
Q Consensus 124 ~~~~A~qv~~~M~~~G~~pd~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~G~~eeA~~Lf 203 (287)
..++|.-+-+|+...|. .-++--+=+..+...|+.++|..+.+.+. .|+...|-+|- =.|.|..+++...+
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c-----~pdlepw~ALc--e~rlGl~s~le~rL 92 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLA-----YPDLEPWLALC--EYRLGLGSALESRL 92 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSC-----CGGGHHHHHHH--HHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC-----CchHHHHHHHH--HHhcccHHHHHHHH
Confidence 45678888888887765 22222223456788999999999877664 24444566553 35899999999999
Q ss_pred HHHHHCCC
Q 047178 204 KGLEAFDR 211 (287)
Q Consensus 204 ~eM~~~Gi 211 (287)
.+|..+|-
T Consensus 93 ~~la~sg~ 100 (116)
T 2p58_C 93 NRLARSQD 100 (116)
T ss_dssp HHHTTCCC
T ss_pred HHHHhCCC
Confidence 99998884
No 238
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=49.33 E-value=2.4e+02 Score=29.74 Aligned_cols=123 Identities=11% Similarity=0.034 Sum_probs=74.4
Q ss_pred HHHHHHHHccchhhHHHHHHHHHHCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCC----------------
Q 047178 114 KALLALEKEQQWHRVVQVIKWMLSKGQGSTMGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHS---------------- 177 (287)
Q Consensus 114 ~ai~~L~k~~~~~~A~qv~~~M~~~G~~pd~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~s---------------- 177 (287)
.++..|.+.++.+-+.++..|. ..|....=.+=.+|..+|+.++|.+.|.+-.. ++..
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~~~~~~~~~ 890 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAE 890 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhhcccccccc
Confidence 4556677777777777766663 33433322222345678999999999976421 1100
Q ss_pred ------CChhhHHHHHHHHHHcCCHhHHHHHHHHHHH-CCCCCChH--HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 047178 178 ------VPWQLCKSMIAIYYRNNMLERLIKLFKGLEA-FDRKPPEK--SIVQRVADAYEVLGLLEEKERVLEKY 242 (287)
Q Consensus 178 ------v~~~tyNsmIsgY~k~G~~eeA~~Lf~eM~~-~Gi~PD~~--~Ty~sLI~a~~k~G~leeA~~ll~~m 242 (287)
.-...|.-++..|-+.|.++.|+++-..-.+ .+-.++.. ..|+.+.+++...|++++|...+-.+
T Consensus 891 ~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~ 964 (1139)
T 4fhn_B 891 KYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVL 964 (1139)
T ss_dssp TTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHH
T ss_pred cccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhC
Confidence 0012367778888888888888876554333 22222111 14677888888889998888777544
No 239
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=47.97 E-value=37 Score=26.65 Aligned_cols=79 Identities=15% Similarity=0.103 Sum_probs=56.0
Q ss_pred chhhHHHHHHHHHHCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHcCCHhHHHHHH
Q 047178 124 QWHRVVQVIKWMLSKGQGSTMGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNNMLERLIKLF 203 (287)
Q Consensus 124 ~~~~A~qv~~~M~~~G~~pd~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~G~~eeA~~Lf 203 (287)
..++|.-+-+|+...|. .-++--+=+..+...|+.++|..+.+.+. .|+...|-+|- =.|.|..+++...+
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c-----~pdlepw~ALc--e~rlGl~s~le~rL 91 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNP-----WPALEPWFALC--EWHLGLGAALDRRL 91 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCC-----CGGGHHHHHHH--HHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC-----CchHHHHHHHH--HHhcccHHHHHHHH
Confidence 45678888888887765 22222223456788999999999876554 24444566553 35899999999999
Q ss_pred HHHHHCCC
Q 047178 204 KGLEAFDR 211 (287)
Q Consensus 204 ~eM~~~Gi 211 (287)
.+|..+|-
T Consensus 92 ~~la~sg~ 99 (115)
T 2uwj_G 92 AGLGGSSD 99 (115)
T ss_dssp HHHHTCSS
T ss_pred HHHHhCCC
Confidence 99999884
No 240
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=47.01 E-value=78 Score=22.82 Aligned_cols=60 Identities=10% Similarity=0.047 Sum_probs=44.5
Q ss_pred HHHHHHHHHHcCC---HhHHHHHHHHHHHCCCCCChHHHHHHHHHHHHhcCCHHHHHHHHHHHhH
Q 047178 183 CKSMIAIYYRNNM---LERLIKLFKGLEAFDRKPPEKSIVQRVADAYEVLGLLEEKERVLEKYKD 244 (287)
Q Consensus 183 yNsmIsgY~k~G~---~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~G~leeA~~ll~~m~~ 244 (287)
|..+-.++...+. .++|..+|++-... .|+.+.....+-..+...|++++|...++++..
T Consensus 9 ~~~~a~al~~~~~~~~~~~A~~~l~~AL~~--dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~ 71 (93)
T 3bee_A 9 LAAKATTLYYLHKQAMTDEVSLLLEQALQL--EPYNEAALSLIANDHFISFRFQEAIDTWVLLLD 71 (93)
T ss_dssp HHHHHHHHHHTTTTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHH--CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4444445543333 79999999998874 577656666677789999999999999988754
No 241
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=46.51 E-value=73 Score=23.67 Aligned_cols=39 Identities=13% Similarity=0.004 Sum_probs=20.9
Q ss_pred CHhHHHHHHHHHHHCCCCCChHHHHHHHHHHHHhcCCHHHHHHH
Q 047178 195 MLERLIKLFKGLEAFDRKPPEKSIVQRVADAYEVLGLLEEKERV 238 (287)
Q Consensus 195 ~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~G~leeA~~l 238 (287)
..++|.+|++.+...| |+. |..+++++...|..+-|..+
T Consensus 52 ~~~~ar~Lld~L~~rG--~~A---f~~F~~aL~et~~~~La~lL 90 (97)
T 3ygs_P 52 RRDQARQLIIDLETRG--SQA---LPLFISCLEDTGQDMLASFL 90 (97)
T ss_dssp HHHHHHHHHHHHTTSC--TTH---HHHHHHHHHTTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHcC--hHH---HHHHHHHHHHcCcHHHHHHH
Confidence 4566666666665554 332 55666666555554444433
No 242
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=45.43 E-value=1.8e+02 Score=26.65 Aligned_cols=168 Identities=8% Similarity=-0.027 Sum_probs=103.6
Q ss_pred CCCCcccHHHHHHHHH---ccCCCcchHHHHHHHHHHccC-CCCHHHHHHHHHHHHHcc-chhhHHHHHHHHHHCCCCCC
Q 047178 69 NVPRKDKINFLVNTLL---DLKNSKEDVYGTLDAWVAWEQ-NFPVGSLKKALLALEKEQ-QWHRVVQVIKWMLSKGQGST 143 (287)
Q Consensus 69 ~~s~~~~~~~Li~~l~---~lg~~~~~v~~~Ld~~~~~~~-~~~~~s~~~ai~~L~k~~-~~~~A~qv~~~M~~~G~~pd 143 (287)
.|.+.+....+.+.+. ..+.-.+.+....+......- ..++..+.. ..|...+ .+++++++++.++... ..+
T Consensus 46 ~i~y~~~y~~~~~~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~--~iL~~l~~~l~eEL~~~~~~L~~n-PKn 122 (349)
T 3q7a_A 46 PIMYSEEYKDAMDYFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRF--SLLTSLNKSLEDELRLMNEFAVQN-LKS 122 (349)
T ss_dssp CBCCCHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHH--HHHHHTTCCHHHHHHHHHHHHHTT-CCC
T ss_pred eeeeCHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHH--HHHHHhhhhHHHHHHHHHHHHHhC-CCc
Confidence 4677777776666544 334333444444444433322 222222322 2233445 5889999999998743 235
Q ss_pred hhHHHHHHHHHHHc-C-CHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHcCCHh--------HHHHHHHHHHHCCCCC
Q 047178 144 MGTCGQLIRALDMD-H-RAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNNMLE--------RLIKLFKGLEAFDRKP 213 (287)
Q Consensus 144 ~~TYnaLI~~y~K~-G-~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~G~~e--------eA~~Lf~eM~~~Gi~P 213 (287)
..+|+---..+.+. + +.+++.++++++.+.+- -+-..|+----.+.+.|..+ ++++.+.+|.+....
T Consensus 123 y~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dp--kNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~- 199 (349)
T 3q7a_A 123 YQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDP--KNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR- 199 (349)
T ss_dssp HHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCT--TCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-
T ss_pred HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-
Confidence 55676665556565 6 88999999999998763 23345665555555666666 999999999987654
Q ss_pred ChHHHHHHHHHHHHhcCC-------HHHHHHHHHHHh
Q 047178 214 PEKSIVQRVADAYEVLGL-------LEEKERVLEKYK 243 (287)
Q Consensus 214 D~~~Ty~sLI~a~~k~G~-------leeA~~ll~~m~ 243 (287)
| ...|+-.-..+.+.+. ++++.+..++..
T Consensus 200 N-~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI 235 (349)
T 3q7a_A 200 N-NSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSI 235 (349)
T ss_dssp C-HHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHH
T ss_pred C-HHHHHHHHHHHHhccccccchHHHHHHHHHHHHHH
Confidence 3 3556655556666765 677777665543
No 243
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=42.12 E-value=70 Score=25.00 Aligned_cols=43 Identities=26% Similarity=0.293 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHCCCCCChHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 047178 198 RLIKLFKGLEAFDRKPPEKSIVQRVADAYEVLGLLEEKERVLEK 241 (287)
Q Consensus 198 eA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~G~leeA~~ll~~ 241 (287)
++.+-+..+....+.|+. .+..+.|.||-+.+++--|.++|+-
T Consensus 28 e~rrglN~l~~~DlVP~P-~ii~aaLrAcRRvND~alAVR~lE~ 70 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEP-KIIDAALRACRRLNDFASAVRILEV 70 (109)
T ss_dssp HHHHHHHHHTTSSBCCCH-HHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCc-HHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 444445555555566653 4456666666666666666665553
No 244
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=41.92 E-value=42 Score=27.64 Aligned_cols=53 Identities=11% Similarity=0.114 Sum_probs=27.4
Q ss_pred HHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCC
Q 047178 161 EEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNNMLERLIKLFKGLEAFDRKP 213 (287)
Q Consensus 161 eeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~G~~eeA~~Lf~eM~~~Gi~P 213 (287)
+++.++|.-|..+++...-...|-.-=..|-..|++.+|.++|..=.+.+-+|
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 34556666665555432222234444444555566666666665555555555
No 245
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=39.96 E-value=55 Score=26.20 Aligned_cols=16 Identities=0% Similarity=-0.089 Sum_probs=6.5
Q ss_pred HHHHHHcCCHHHHHHH
Q 047178 151 IRALDMDHRAEEAHKF 166 (287)
Q Consensus 151 I~~y~K~G~leeA~~l 166 (287)
+..-+..|+.+-+..+
T Consensus 80 L~~A~~~~~~~~v~~L 95 (240)
T 3eu9_A 80 LHWATRQGHLSMVVQL 95 (240)
T ss_dssp HHHHHHHTCHHHHHHH
T ss_pred hHHHHHcCCHHHHHHH
Confidence 3333444444433333
No 246
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=37.91 E-value=23 Score=24.73 Aligned_cols=32 Identities=16% Similarity=-0.010 Sum_probs=21.3
Q ss_pred HHHHHHHHHhhhCCCCCCChhhHHHHHHHH-HHc
Q 047178 161 EEAHKFWEKRIGIDLHSVPWQLCKSMIAIY-YRN 193 (287)
Q Consensus 161 eeA~~lF~eM~~~g~~sv~~~tyNsmIsgY-~k~ 193 (287)
++|++.|-+|....-+ .|.-||.-.|... ++.
T Consensus 3 eEae~aF~~lL~~~~V-~s~wsweqamr~i~i~D 35 (59)
T 2b7e_A 3 MEAEKEFITMLKENQV-DSTWSFSRIISELGTRD 35 (59)
T ss_dssp THHHHHHHHHHHHTTC-CSSCCHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHcCC-CCCCcHHHHHHHhccCC
Confidence 6899999998764433 3444787777666 444
No 247
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=37.46 E-value=56 Score=27.16 Aligned_cols=54 Identities=11% Similarity=0.033 Sum_probs=40.4
Q ss_pred HHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCC
Q 047178 161 EEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNNMLERLIKLFKGLEAFDRKPP 214 (287)
Q Consensus 161 eeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~G~~eeA~~Lf~eM~~~Gi~PD 214 (287)
+++.++|..|..+++..--...|-.-=.-|-..|++.+|.++|..=.+.+-+|-
T Consensus 77 ~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~ 130 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPL 130 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence 568888998888876432233466655667788999999999988888888884
No 248
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=37.32 E-value=66 Score=27.72 Aligned_cols=57 Identities=5% Similarity=0.021 Sum_probs=39.2
Q ss_pred cCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCC
Q 047178 157 DHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNNMLERLIKLFKGLEAFDRKP 213 (287)
Q Consensus 157 ~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~G~~eeA~~Lf~eM~~~Gi~P 213 (287)
++...++..+|.-|..+++..--...|-..=.-|...|++.+|.++|..=.+.+-+|
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 344668888888887766642223346666666777788888888887777777777
No 249
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=36.64 E-value=86 Score=29.19 Aligned_cols=66 Identities=9% Similarity=0.063 Sum_probs=49.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHcCC--HhHHHHHHHHHHHCCCCCC
Q 047178 147 CGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNNM--LERLIKLFKGLEAFDRKPP 214 (287)
Q Consensus 147 YnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~G~--~eeA~~Lf~eM~~~Gi~PD 214 (287)
.+.+|.-|...|+++||.+.++++....+ .+.+.+.+++.++=+.+. .+.+..||..+...|+-+-
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~f--hhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~ 287 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHF--HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 287 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTC--HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcc--hHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCH
Confidence 58899999999999999999999864332 233557777777766543 4668899999998887653
No 250
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=33.10 E-value=2.8e+02 Score=25.13 Aligned_cols=114 Identities=8% Similarity=-0.044 Sum_probs=79.8
Q ss_pred hhhHHHHHHHHHHCCCCCChhHHHHHHHHHHHcC--CHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHcCC-HhHHHH
Q 047178 125 WHRVVQVIKWMLSKGQGSTMGTCGQLIRALDMDH--RAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNNM-LERLIK 201 (287)
Q Consensus 125 ~~~A~qv~~~M~~~G~~pd~~TYnaLI~~y~K~G--~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~G~-~eeA~~ 201 (287)
+++++.+++.++.. .+.+..+|+----.+.+.| .++++..++++|.+.+. -+...|+----.+.+.|. ++++++
T Consensus 90 l~~EL~~~~~~L~~-~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dp--rNy~AW~~R~~vl~~l~~~~~eel~ 166 (331)
T 3dss_A 90 VKAELGFLESCLRV-NPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADE--RNFHCWDYRRFVAAQAAVAPAEELA 166 (331)
T ss_dssp HHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHh-CCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhCcCHHHHHH
Confidence 67888888888764 2345666766666666777 48999999999998763 344567766677778888 599999
Q ss_pred HHHHHHHCCCCCChHHHHHHHHHHHHhc--------------CCHHHHHHHHHHHh
Q 047178 202 LFKGLEAFDRKPPEKSIVQRVADAYEVL--------------GLLEEKERVLEKYK 243 (287)
Q Consensus 202 Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~--------------G~leeA~~ll~~m~ 243 (287)
.+..+.+..+. ....|+-.-..+.+. +.++++.+.+.+..
T Consensus 167 ~~~~~I~~~p~--N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai 220 (331)
T 3dss_A 167 FTDSLITRNFS--NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAF 220 (331)
T ss_dssp HHHHHHHHCSC--CHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCC--CHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHH
Confidence 99999987644 335555544444444 45677777666543
No 251
>1s6c_A KV4 potassium channel-interacting protein kchip1B; EF-hand, transport protein; 2.00A {Rattus norvegicus} SCOP: a.39.1.5 PDB: 2nz0_A 2i2r_E
Probab=32.66 E-value=1.7e+02 Score=22.53 Aligned_cols=130 Identities=9% Similarity=0.089 Sum_probs=0.0
Q ss_pred CcCCCCcccHHHHHHHHHccC---CCcchHHHHHHHH-HHccCCCCHHHHHHHHHHHHHccchhhHHHHHHHHHHCCCCC
Q 047178 67 GENVPRKDKINFLVNTLLDLK---NSKEDVYGTLDAW-VAWEQNFPVGSLKKALLALEKEQQWHRVVQVIKWMLSKGQGS 142 (287)
Q Consensus 67 ~~~~s~~~~~~~Li~~l~~lg---~~~~~v~~~Ld~~-~~~~~~~~~~s~~~ai~~L~k~~~~~~A~qv~~~M~~~G~~p 142 (287)
|. |+.++ |...+..++ .....+-..+..+ ......++...+..++..+.....-.++..+|+.+-..|-+
T Consensus 34 G~-i~~~e----~~~~l~~~~~~~~~~~~~~~~f~~~D~d~~g~i~~~Ef~~~~~~~~~~~~~~~~~~~f~~~D~d~~G- 107 (183)
T 1s6c_A 34 GV-VNEET----FKQIYAQFFPHGDASTYAHYLFNAFDTTQTGSVKFEDFVTALSILLRGTVHEKLRWTFNLYDINKDG- 107 (183)
T ss_dssp SE-ECHHH----HHHHHHHHSTTSCCHHHHHHHHHHHCTTCSSCEEHHHHHHHHHHHHHCCHHHHHHHHHHHHCTTCSS-
T ss_pred Cc-CCHHH----HHHHHHHHcCCCChHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHcCCCHHHHHHHHHHHhCCCCCC-
Q ss_pred ChhHHHHHHHHHHHc----CCH-----------HHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHcCCHhHHHHHHHHH
Q 047178 143 TMGTCGQLIRALDMD----HRA-----------EEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNNMLERLIKLFKGL 206 (287)
Q Consensus 143 d~~TYnaLI~~y~K~----G~l-----------eeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~G~~eeA~~Lf~eM 206 (287)
.+++.-+...+... |.. +++.++|..+-..+ -..++|.-++..+.+...+-+++..|+.+
T Consensus 108 -~i~~~e~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~D~d~---dG~i~~~Ef~~~~~~~~~~~~~l~~~d~~ 182 (183)
T 1s6c_A 108 -YINKEEMMDIVKAIYDMMGKYTYPVLKEDTPRQHVDVFFQKMDKNK---DGIVTLDEFLESXQEDDNIMRSLQLFQNV 182 (183)
T ss_dssp -CEEHHHHHHHHHHHHHHTC-----------CHHHHHHHHHHHCTTC---SSEECHHHHHHHTTSCCHHHHHHHHHHHH
T ss_pred -eEcHHHHHHHHHHHHHHhccccCcCccHHHHHHHHHHHHHHhCCCC---CCcEeHHHHHHHHhcChHHHHHHHHhhcc
No 252
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=32.13 E-value=2.8e+02 Score=29.32 Aligned_cols=121 Identities=12% Similarity=-0.013 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHHHccchhhHHHHHHHHHHCCCCCCh-----------------------hHHHHHHHHHHHcCCHHHHHH
Q 047178 109 VGSLKKALLALEKEQQWHRVVQVIKWMLSKGQGSTM-----------------------GTCGQLIRALDMDHRAEEAHK 165 (287)
Q Consensus 109 ~~s~~~ai~~L~k~~~~~~A~qv~~~M~~~G~~pd~-----------------------~TYnaLI~~y~K~G~leeA~~ 165 (287)
...+..+.. +...|++++|.+.|..- ..|+..+. .=|.-++.-|-+.|..+.|.+
T Consensus 843 ~~~yl~g~~-~L~~ge~~~A~~~F~ka-a~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~ 920 (1139)
T 4fhn_B 843 IAVYLKALI-YLKSKEAVKAVRCFKTT-SLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALE 920 (1139)
T ss_dssp HHHHHHHHH-HHHTTCHHHHHHHHHTC-CCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHH
T ss_pred HHHHHHHHH-HHhcCCHHHHHHHHHHH-hhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHH
Confidence 344443333 45678999999999653 23332210 115667777888888888876
Q ss_pred HHHHhhhCCCCCCCh---hhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChHHHHHHHHHHHHhcCCHHH
Q 047178 166 FWEKRIGIDLHSVPW---QLCKSMIAIYYRNNMLERLIKLFKGLEAFDRKPPEKSIVQRVADAYEVLGLLEE 234 (287)
Q Consensus 166 lF~eM~~~g~~sv~~---~tyNsmIsgY~k~G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~G~lee 234 (287)
+-..-.+......+. ..|..+..++...|++++|...+-.|.....+-| ....||..+|..|.++.
T Consensus 921 fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r~~---cLr~LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 921 FSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLKKS---CLLDFVNQLTKQGKINQ 989 (1139)
T ss_dssp HHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSCHH---HHHHHHHHHHHHCCHHH
T ss_pred HHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHHHH---HHHHHHHHHHhCCChhh
Confidence 654333211100111 2599999999999999999999999988877754 36778877777665543
No 253
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=31.91 E-value=73 Score=27.85 Aligned_cols=44 Identities=18% Similarity=0.311 Sum_probs=31.1
Q ss_pred hHHHHHHHHHHHCCCCCChHHHHHHHHHHHHhcCCHHHHHHHHH
Q 047178 197 ERLIKLFKGLEAFDRKPPEKSIVQRVADAYEVLGLLEEKERVLE 240 (287)
Q Consensus 197 eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~G~leeA~~ll~ 240 (287)
+++.++|..|...||--.....|-..-.-+...|++.+|..|+.
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~ 174 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQ 174 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 56777777777777655545667777777777777777777766
No 254
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=31.88 E-value=90 Score=25.57 Aligned_cols=43 Identities=21% Similarity=0.177 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHCCCCCChHHHHHHHHHHHHhcCCHHHHHHHHH
Q 047178 198 RLIKLFKGLEAFDRKPPEKSIVQRVADAYEVLGLLEEKERVLE 240 (287)
Q Consensus 198 eA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~G~leeA~~ll~ 240 (287)
++.++|..|...||--.....|-..-.-+...|++.+|.+|+.
T Consensus 83 dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~ 125 (152)
T 4a1g_A 83 DLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQ 125 (152)
T ss_dssp CHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3555555555554443333444555555555555555555544
No 255
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=31.29 E-value=1.2e+02 Score=25.96 Aligned_cols=71 Identities=15% Similarity=0.213 Sum_probs=50.6
Q ss_pred hHHHHHHHHHHCCCCCChh-HHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHcCCHhHHHHHHHH
Q 047178 127 RVVQVIKWMLSKGQGSTMG-TCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNNMLERLIKLFKG 205 (287)
Q Consensus 127 ~A~qv~~~M~~~G~~pd~~-TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~G~~eeA~~Lf~e 205 (287)
++.++|..|..+|++.... -|-.-=..|...|++.+|.++|..-..++-. | ..-|...| .++..+
T Consensus 97 ~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~--P---~~rL~~~~---------~~F~~R 162 (202)
T 3esl_A 97 ESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCR--P---YNRLLRSL---------SNYEDR 162 (202)
T ss_dssp HHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB--S---HHHHHHHH---------HHHHHH
T ss_pred CHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc--c---HHHHHHHH---------HHHHHH
Confidence 7778888888888876543 4666677777889999999999887777653 4 34454444 345567
Q ss_pred HHHCCC
Q 047178 206 LEAFDR 211 (287)
Q Consensus 206 M~~~Gi 211 (287)
|...++
T Consensus 163 ~~~~~~ 168 (202)
T 3esl_A 163 LREMNI 168 (202)
T ss_dssp HHHTTC
T ss_pred HHhcCC
Confidence 777777
No 256
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=30.90 E-value=1.4e+02 Score=21.60 Aligned_cols=36 Identities=8% Similarity=0.025 Sum_probs=19.2
Q ss_pred cCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHcCCHh
Q 047178 157 DHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNNMLE 197 (287)
Q Consensus 157 ~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~G~~e 197 (287)
....+.|.++++.+..+|- ..|..++.++.+.|...
T Consensus 49 ~t~~~kar~Lld~l~~kG~-----~af~~F~~aL~~~~~~~ 84 (94)
T 2p1h_A 49 PTQQQRAAMLIKMILKKDN-----DSYVSFYNALLHEGYKD 84 (94)
T ss_dssp SSHHHHHHHHHHHHTTSCH-----HHHHHHHHHHHHTTCHH
T ss_pred CChHHHHHHHHHHHHHcCH-----HHHHHHHHHHHHcCHHH
Confidence 3455666666666655541 23555666665555433
No 257
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=30.81 E-value=68 Score=26.33 Aligned_cols=109 Identities=9% Similarity=-0.032 Sum_probs=66.8
Q ss_pred HHHHHHHHHCCCCCChhH------------HHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHcCCH
Q 047178 129 VQVIKWMLSKGQGSTMGT------------CGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNNML 196 (287)
Q Consensus 129 ~qv~~~M~~~G~~pd~~T------------YnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~G~~ 196 (287)
.++++++.+.|..++... ..+.+..-++.|+.+-+..+++.... ++...+..-++ .+...+..|..
T Consensus 118 ~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~-~~~~~~~~g~t-~l~~a~~~~~~ 195 (285)
T 1wdy_A 118 VKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGA-DVNACDNMGRN-ALIHALLSSDD 195 (285)
T ss_dssp HHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCC-CTTCCCTTSCC-HHHHHHHCSCT
T ss_pred HHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCC-CCCccCCCCCC-HHHHHHHcccc
Confidence 356778888887765431 22456667788998888777765211 11111111133 34445567777
Q ss_pred hHHHHHHHHHHHCCCCCChHHH--HHHHHHHHHhcCCHHHHHHHHH
Q 047178 197 ERLIKLFKGLEAFDRKPPEKSI--VQRVADAYEVLGLLEEKERVLE 240 (287)
Q Consensus 197 eeA~~Lf~eM~~~Gi~PD~~~T--y~sLI~a~~k~G~leeA~~ll~ 240 (287)
+...++++.+.+.|..|+. .. -.+.+...+..|.++-++.+++
T Consensus 196 ~~~~~i~~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~ 240 (285)
T 1wdy_A 196 SDVEAITHLLLDHGADVNV-RGERGKTPLILAVEKKHLGLVQRLLE 240 (285)
T ss_dssp TTHHHHHHHHHHTTCCSSC-CCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred chHHHHHHHHHHcCCCCCC-cCCCCCcHHHHHHHcCCHHHHHHHHh
Confidence 7777888888889987762 21 1345666677888877777765
No 258
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=30.32 E-value=74 Score=23.62 Aligned_cols=40 Identities=10% Similarity=-0.107 Sum_probs=29.7
Q ss_pred CCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHcCCHhHHHHH
Q 047178 158 HRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNNMLERLIKL 202 (287)
Q Consensus 158 G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~G~~eeA~~L 202 (287)
.+.+.|.++++.+..+|- . .|...++++...|+.+-|..|
T Consensus 51 t~~~~ar~Lld~L~~rG~---~--Af~~F~~aL~et~~~~La~lL 90 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGS---Q--ALPLFISCLEDTGQDMLASFL 90 (97)
T ss_dssp CHHHHHHHHHHHHTTSCT---T--HHHHHHHHHHTTTCHHHHHHH
T ss_pred ChHHHHHHHHHHHHHcCh---H--HHHHHHHHHHHcCcHHHHHHH
Confidence 468888899998888773 2 488888888777776655444
No 259
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=29.06 E-value=1e+02 Score=25.52 Aligned_cols=50 Identities=8% Similarity=0.195 Sum_probs=35.8
Q ss_pred hhHHHHHHHHHHCCCCCChh-HHHHHHHHHHHcCCHHHHHHHHHHhhhCCC
Q 047178 126 HRVVQVIKWMLSKGQGSTMG-TCGQLIRALDMDHRAEEAHKFWEKRIGIDL 175 (287)
Q Consensus 126 ~~A~qv~~~M~~~G~~pd~~-TYnaLI~~y~K~G~leeA~~lF~eM~~~g~ 175 (287)
....++|..|..+|++.... -|-.-=..|-..|++.+|.++|..-..++-
T Consensus 77 ~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A 127 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKA 127 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 56677888888888876543 355555566677888888888887777664
No 260
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=28.98 E-value=1.3e+02 Score=24.06 Aligned_cols=111 Identities=12% Similarity=0.112 Sum_probs=70.1
Q ss_pred HHHHHHHHCCCCCChhH---------------HHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHcC
Q 047178 130 QVIKWMLSKGQGSTMGT---------------CGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNN 194 (287)
Q Consensus 130 qv~~~M~~~G~~pd~~T---------------YnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~G 194 (287)
++++.+++.|..++... ..+.+..-++.|+.+-+..|++.-. ++...+ ..-.+-+..-+..|
T Consensus 89 ~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga--~~~~~d-~~g~t~L~~A~~~~ 165 (232)
T 2rfa_A 89 NLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGA--DIRAQD-SLGNTVLHILILQP 165 (232)
T ss_dssp HHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTC--CTTCCC-TTSCCHHHHHHTCS
T ss_pred HHHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCC--CCCCCC-CCCCCHHHHHHHcC
Confidence 46677788887766531 3445666677899887777765421 111111 11234556667889
Q ss_pred CHhHHHHHHHHHHHCCCCC---------ChHHHHHHHHHHHHhcCCHHHHHHHHHHHhHH
Q 047178 195 MLERLIKLFKGLEAFDRKP---------PEKSIVQRVADAYEVLGLLEEKERVLEKYKDL 245 (287)
Q Consensus 195 ~~eeA~~Lf~eM~~~Gi~P---------D~~~Ty~sLI~a~~k~G~leeA~~ll~~m~~l 245 (287)
..+-+..+++-+.+.|..+ |. .- .+-++..+..|..+-++.+++.-...
T Consensus 166 ~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~-~g-~tpl~~A~~~g~~~~v~~Ll~~g~~~ 223 (232)
T 2rfa_A 166 NKTFACQMYNLLLSYDGGDHLKSLELVPNN-QG-LTPFKLAGVEGNIVMFQHLMQKRKHI 223 (232)
T ss_dssp CHHHHHHHHHHHHHTTCSCSSCCGGGCCCT-TS-CCHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred ChHHHHHHHHHHHhcCCchhhhhhhccCCC-CC-CCHHHHHHHcCCHHHHHHHHhcCccc
Confidence 9998888888888888644 31 21 34456667889988888887764433
No 261
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=27.29 E-value=1.5e+02 Score=24.34 Aligned_cols=43 Identities=26% Similarity=0.293 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHCCCCCChHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 047178 198 RLIKLFKGLEAFDRKPPEKSIVQRVADAYEVLGLLEEKERVLEK 241 (287)
Q Consensus 198 eA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~G~leeA~~ll~~ 241 (287)
+..+-+..+...++.|+. .++.+.|.+|-+.+++--|.++|+-
T Consensus 71 ElrrglN~l~~~DlVPeP-~Ii~AALrAcRRvNDfalAVR~lE~ 113 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEP-KIIDAALRACRRLNDFASAVRILEV 113 (152)
T ss_dssp HHHHHHHHHTTSSBCCCH-HHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCc-HHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 344455555566666663 5566666777777777666666653
No 262
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=26.85 E-value=98 Score=28.06 Aligned_cols=65 Identities=11% Similarity=0.082 Sum_probs=46.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHcCC--HhHHHHHHHHHHHCCCCC
Q 047178 147 CGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNNM--LERLIKLFKGLEAFDRKP 213 (287)
Q Consensus 147 YnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~G~--~eeA~~Lf~eM~~~Gi~P 213 (287)
.+.+|.-|...|+++||.+.++++....+ -+.+.+..+..++=+.+. -+.+..||..+...|+-+
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f--~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls 235 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHF--HHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTIT 235 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGG--HHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcc--hHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCC
Confidence 56788889889999999999998853222 123456677777766533 456778888888777654
No 263
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=24.46 E-value=95 Score=28.95 Aligned_cols=92 Identities=9% Similarity=-0.000 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCCh--hhHHHHHHHHHHcCCHhHHHHHHHHHH---HCCCCCChHHHHH
Q 047178 146 TCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPW--QLCKSMIAIYYRNNMLERLIKLFKGLE---AFDRKPPEKSIVQ 220 (287)
Q Consensus 146 TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~--~tyNsmIsgY~k~G~~eeA~~Lf~eM~---~~Gi~PD~~~Ty~ 220 (287)
++..|-+-|++.|++++|.+.|.++...-.. ... -.|-.+|..+...+++..|........ ..+-.|+. .
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~-~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~----~ 207 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAIS-TGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWER----R 207 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTC-CCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHH----H
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHH----H
Confidence 5677888899999999999999998764321 121 256678888888999999988888764 34544432 2
Q ss_pred HHHHHH-----HhcCCHHHHHHHHHHH
Q 047178 221 RVADAY-----EVLGLLEEKERVLEKY 242 (287)
Q Consensus 221 sLI~a~-----~k~G~leeA~~ll~~m 242 (287)
.-+..| ...+++.+|-..|-+.
T Consensus 208 ~~lk~~~gl~~l~~r~f~~Aa~~f~e~ 234 (429)
T 4b4t_R 208 NRYKTYYGIHCLAVRNFKEAAKLLVDS 234 (429)
T ss_dssp HHHHHHHHHGGGGTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhChHHHHHHHHHHH
Confidence 233333 2357788877766554
No 264
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=24.18 E-value=1e+02 Score=21.19 Aligned_cols=47 Identities=13% Similarity=0.066 Sum_probs=29.7
Q ss_pred HHHHHHHHHhhhCCCCCCChhhHHHHHHHH-HHcCCHhHHHHHHHHHHHCCCCCC
Q 047178 161 EEAHKFWEKRIGIDLHSVPWQLCKSMIAIY-YRNNMLERLIKLFKGLEAFDRKPP 214 (287)
Q Consensus 161 eeA~~lF~eM~~~g~~sv~~~tyNsmIsgY-~k~G~~eeA~~Lf~eM~~~Gi~PD 214 (287)
+++.+.+.+|. |...-..+-..| ...|++|.|+..+-+|...+..|+
T Consensus 10 ee~l~~L~emF-------P~ld~~~I~~vL~a~~gdvd~aI~~LL~m~~~~~~~~ 57 (59)
T 1wgl_A 10 EEDLKAIQDMF-------PNMDQEVIRSVLEAQRGNKDAAINSLLQMGEEPSGPS 57 (59)
T ss_dssp HHHHHHHHHHC-------SSSCHHHHHHHHTTTTTCHHHHHHHHHHSSCCCCSCC
T ss_pred HHHHHHHHHHC-------CCCCHHHHHHHHHHcCCCHHHHHHHHHcCcCCCCCCC
Confidence 55666666663 222234444555 356678888888888887777776
No 265
>2hyv_A Annexin A2; calcium-binding protein, membrane-binding protein, helix BUN heparin, hexasaccharide, metal binding protein; HET: UAP SGN IDS; 1.42A {Homo sapiens} PDB: 2hyu_A* 2hyw_A 1w7b_A 1xjl_A
Probab=24.16 E-value=3.8e+02 Score=23.85 Aligned_cols=98 Identities=14% Similarity=0.151 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHccchhhHHHHHHHHHHCCCCCChhHHHHHHHHHHHcC--CHHHHHHHHHHhhhCCCCCCCh-----hhH
Q 047178 111 SLKKALLALEKEQQWHRVVQVIKWMLSKGQGSTMGTCGQLIRALDMDH--RAEEAHKFWEKRIGIDLHSVPW-----QLC 183 (287)
Q Consensus 111 s~~~ai~~L~k~~~~~~A~qv~~~M~~~G~~pd~~TYnaLI~~y~K~G--~leeA~~lF~eM~~~g~~sv~~-----~ty 183 (287)
.+..++..+....-...|..+.+.| +|.+.| ..+||.-+|..- ++.+..+.|.++-.+++. -+. --|
T Consensus 63 ~fe~~l~~l~~~~~~~DA~~L~~Am--kG~Gtd---e~~LieIL~~Rs~~q~~~Ik~aY~~~y~~~L~-~di~se~sG~f 136 (308)
T 2hyv_A 63 HLETVILGLLKTPAQYDASELKASM--KGLGTD---EDSLIEIICSRTNQELQEINRVYKEMYKTDLE-KDIISDTSGDF 136 (308)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHT--STTCCC---HHHHHHHHHHCCHHHHHHHHHHHHHHHSSCHH-HHHHHTCCHHH
T ss_pred CHHHHHHHHcCCcHHHHHHHHHHHh--hcCCCC---HHHHHHHHhcCCHHHHHHHHHHHHHhhCCCHH-HHHhhccCccH
Confidence 3444555555444455666777776 455555 467888887654 344556666666554431 000 126
Q ss_pred HHHHHHHHHcCC------------HhHHHHHHHHHHHCCCCCCh
Q 047178 184 KSMIAIYYRNNM------------LERLIKLFKGLEAFDRKPPE 215 (287)
Q Consensus 184 NsmIsgY~k~G~------------~eeA~~Lf~eM~~~Gi~PD~ 215 (287)
-.++-++++..+ -.+|..|++-+.. +.-.|+
T Consensus 137 ~~ll~~l~~~~r~~e~~~vd~~~a~~DA~~L~~A~~~-~~Gtde 179 (308)
T 2hyv_A 137 RKLMVALAKGRRAEDGSVIDYELIDQDARDLYDAGVK-RKGTDV 179 (308)
T ss_dssp HHHHHHHHTCCCCCCCSSCCHHHHHHHHHHHHHTTTT-SSSCCH
T ss_pred HHHHHHHHccccccccCCCCccHHHHHHHHHHHHhhc-cCCCcH
Confidence 677777887666 4567777766432 234575
No 266
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=23.89 E-value=1.1e+02 Score=23.77 Aligned_cols=46 Identities=13% Similarity=0.123 Sum_probs=36.2
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChHHHHHHHHHHHHhcC
Q 047178 183 CKSMIAIYYRNNMLERLIKLFKGLEAFDRKPPEKSIVQRVADAYEVLG 230 (287)
Q Consensus 183 yNsmIsgY~k~G~~eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~G 230 (287)
.+.+|.=|...|..+||..-++++..-.+.|. +++..+..++-+.+
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e--~V~~~i~~alE~~~ 55 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHE--LVYEAIVMVLESTG 55 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHH--HHHHHHHHHHHCCS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHH--HHHHHHHHHHcCCC
Confidence 57899999999999999999999975455543 55677777777765
No 267
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=22.94 E-value=2.7e+02 Score=21.66 Aligned_cols=49 Identities=10% Similarity=-0.112 Sum_probs=37.0
Q ss_pred CCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHH
Q 047178 138 KGQGSTMGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIA 188 (287)
Q Consensus 138 ~G~~pd~~TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIs 188 (287)
..+.|+.....+.+.++-+.+++.-|.++|+....+-. ....+|.-++.
T Consensus 39 ~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~--~~~~iY~~~lq 87 (109)
T 1v54_E 39 YDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQ 87 (109)
T ss_dssp SSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHH
T ss_pred cccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc--CchhhHHHHHH
Confidence 34668999999999999999999999999998865432 12235776654
No 268
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=22.89 E-value=3.3e+02 Score=25.45 Aligned_cols=95 Identities=5% Similarity=-0.018 Sum_probs=69.9
Q ss_pred HHHHHHHHccchhhHHHHHHHHHH--CCCCCC---hhHHHHHHHHHHHcCCHHHHHHHHHHhhhC--CCCCCCh---hhH
Q 047178 114 KALLALEKEQQWHRVVQVIKWMLS--KGQGST---MGTCGQLIRALDMDHRAEEAHKFWEKRIGI--DLHSVPW---QLC 183 (287)
Q Consensus 114 ~ai~~L~k~~~~~~A~qv~~~M~~--~G~~pd---~~TYnaLI~~y~K~G~leeA~~lF~eM~~~--g~~sv~~---~ty 183 (287)
.+...+...|++.+|..++..+.. .|.... +..|--.+..|-..+++..|..+..+...+ ....+|. ..|
T Consensus 142 ~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~ 221 (445)
T 4b4t_P 142 DLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYY 221 (445)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHH
Confidence 566778899999999999988753 232222 245777888999999999999999986421 1111222 368
Q ss_pred HHHHHHHHHcCCHhHHHHHHHHHHH
Q 047178 184 KSMIAIYYRNNMLERLIKLFKGLEA 208 (287)
Q Consensus 184 NsmIsgY~k~G~~eeA~~Lf~eM~~ 208 (287)
..++..+...+++.+|...|.+...
T Consensus 222 ~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 222 NLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 8888888999999999988888754
No 269
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=21.80 E-value=1.4e+02 Score=24.09 Aligned_cols=66 Identities=9% Similarity=0.076 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHcCC--HhHHHHHHHHHHHCCCCC
Q 047178 146 TCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNNM--LERLIKLFKGLEAFDRKP 213 (287)
Q Consensus 146 TYnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~G~--~eeA~~Lf~eM~~~Gi~P 213 (287)
..+.+|.-|...|+++||.+.++++....+ .+.+.+..+..++=+.+. -+.+..||..+...|+-+
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~p~f--~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is 78 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEVPHF--HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 78 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGG--HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCCcc--hHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 368899999999999999999999853322 133567777777776432 467889999999888755
No 270
>1hm6_A Annexin 1; phospholipid/Ca(2+)-binding protein, calcium-free form, FULL-length protein comprising protein core and N-terminal domain, metal; 1.80A {Sus scrofa} SCOP: a.65.1.1 PDB: 1mcx_A 1ain_A 1bo9_A
Probab=21.77 E-value=4.6e+02 Score=23.88 Aligned_cols=125 Identities=17% Similarity=0.174 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHHccchhhHHHHHHHHHHCCCCCChhHHHHHHHHHHHcC--CHHHHHHHHHHhhhCCCCCCCh-----hh
Q 047178 110 GSLKKALLALEKEQQWHRVVQVIKWMLSKGQGSTMGTCGQLIRALDMDH--RAEEAHKFWEKRIGIDLHSVPW-----QL 182 (287)
Q Consensus 110 ~s~~~ai~~L~k~~~~~~A~qv~~~M~~~G~~pd~~TYnaLI~~y~K~G--~leeA~~lF~eM~~~g~~sv~~-----~t 182 (287)
..+..++..+....--.+|..+.+.| +|.+.| ..+||.-+|..- .+.+..+.|..+-.+++. -+. --
T Consensus 102 G~fe~~l~~l~~~p~~~DA~~L~~Am--kG~GTd---e~~LieIL~~Rsn~q~~~Ik~aY~~~y~~~Le-~di~se~sG~ 175 (346)
T 1hm6_A 102 GHLEEVALALLKTPAQFDADELRAAM--KGLGTD---EDTLNEILASRTNREIREINRVYKEELKRDLA-KDITSDTSGD 175 (346)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHH--SSSCCC---HHHHHHHHHHSCHHHHHHHHHHHHHTSCCCHH-HHHHHHCCHH
T ss_pred ccHHHHHHHHhCCcHHHHHHHHHHHh--hccCCC---HHHHHHHHhcCCHHHHHHHHHHHHHHhchhHH-HHHhhccCCc
Confidence 34556666666655566777888887 566666 477888888755 345666677776655431 010 12
Q ss_pred HHHHHHHHHHcCCH-----------hHHHHHHHHHHHCCCCCChHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHH
Q 047178 183 CKSMIAIYYRNNML-----------ERLIKLFKGLEAFDRKPPEKSIVQRVADAYEVLGLLEEKERVLEKYKDLF 246 (287)
Q Consensus 183 yNsmIsgY~k~G~~-----------eeA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~G~leeA~~ll~~m~~l~ 246 (287)
|-.++-++++..+. .+|..|++-|+. +.-.|+ .+ ++.-+|.. ...+-..++..|...|
T Consensus 176 f~~ll~~L~~~~R~e~~~vd~~~a~~DA~~L~~A~~~-~~Gtde-~~---li~IL~tR-S~~~L~~i~~~Y~~~~ 244 (346)
T 1hm6_A 176 YQKALLSLAKGDRSEDLAINDDLADTDARALYEAGER-RKGTDL-NV---FITILTTR-SYPHLRRVFQKYSKYS 244 (346)
T ss_dssp HHHHHHHHHTTCCCCCCSCCHHHHHHHHHHHHHHTTT-SSSCCH-HH---HHHHHHHS-CHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhhccccccCCCCchHHHHHHHHHHHHHhc-cCCCcH-HH---HHHHHhcC-CHHHHHHHHHHHHHHH
Confidence 67777778876543 377888877643 344675 43 44444443 3455566666665544
No 271
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=21.51 E-value=94 Score=22.01 Aligned_cols=29 Identities=10% Similarity=0.041 Sum_probs=18.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhhhCCC
Q 047178 147 CGQLIRALDMDHRAEEAHKFWEKRIGIDL 175 (287)
Q Consensus 147 YnaLI~~y~K~G~leeA~~lF~eM~~~g~ 175 (287)
++-|++.+++.--+|+|...+++...+|.
T Consensus 5 ~~Qll~l~Aed~AieDaiy~L~~aL~~g~ 33 (65)
T 2f6m_A 5 LNQLYNLVAQDYALTDTIEALSRMLHRGT 33 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 55566666666666666666666666654
No 272
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=21.34 E-value=1.3e+02 Score=26.28 Aligned_cols=53 Identities=6% Similarity=0.140 Sum_probs=37.8
Q ss_pred HHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCC
Q 047178 161 EEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNNMLERLIKLFKGLEAFDRKP 213 (287)
Q Consensus 161 eeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~G~~eeA~~Lf~eM~~~Gi~P 213 (287)
+++..+|.-|..+++..--...|-..=..|-..|++.+|.++|..=.+.+-+|
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 57778888888777643223456666666778888888888888777777777
No 273
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=21.04 E-value=1.7e+02 Score=24.21 Aligned_cols=104 Identities=13% Similarity=-0.028 Sum_probs=57.1
Q ss_pred HHHHHHHHCCCCCChhH--HHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCChhhHHHHHHHHHHcCCHhHHHHHHHHHH
Q 047178 130 QVIKWMLSKGQGSTMGT--CGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNNMLERLIKLFKGLE 207 (287)
Q Consensus 130 qv~~~M~~~G~~pd~~T--YnaLI~~y~K~G~leeA~~lF~eM~~~g~~sv~~~tyNsmIsgY~k~G~~eeA~~Lf~eM~ 207 (287)
++++.+.+.|..++... ..+-+..-+..|..+-++.+++.-...+. +. ...+.+..-++.|..+ +++.+.
T Consensus 50 ~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~---~~-~g~t~L~~A~~~~~~~----~v~~Ll 121 (261)
T 2xai_A 50 SCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQP---ES-DLASPIHEAARRGHVE----CVNSLI 121 (261)
T ss_dssp HHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSC---SC-TTCCHHHHHHHTTCHH----HHHHHH
T ss_pred HHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC---CC-CCCCHHHHHHHcCcHH----HHHHHH
Confidence 45667777787665432 23445555677888776666654221111 11 1223445556777765 444445
Q ss_pred HCCCCCChHH-HHHHHHHHHHhcCCHHHHHHHHHH
Q 047178 208 AFDRKPPEKS-IVQRVADAYEVLGLLEEKERVLEK 241 (287)
Q Consensus 208 ~~Gi~PD~~~-Ty~sLI~a~~k~G~leeA~~ll~~ 241 (287)
+.|..+|... .-.+.+...+..|..+-++.+++.
T Consensus 122 ~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 156 (261)
T 2xai_A 122 AYGGNIDHKISHLGTPLYLACENQQRACVKKLLES 156 (261)
T ss_dssp HTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHH
T ss_pred HcCCCCCcCCCCCCCHHHHHHHhCCHHHHHHHHHc
Confidence 6676665210 012455566778888777777654
No 274
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=20.50 E-value=1.2e+02 Score=23.72 Aligned_cols=18 Identities=6% Similarity=0.076 Sum_probs=8.4
Q ss_pred HHcCCHhHHHHHHHHHHH
Q 047178 191 YRNNMLERLIKLFKGLEA 208 (287)
Q Consensus 191 ~k~G~~eeA~~Lf~eM~~ 208 (287)
...++++.|..+..++..
T Consensus 72 l~~~dy~~A~~ih~~l~t 89 (118)
T 2yru_A 72 LLHHQWDAADDIHRSLMV 89 (118)
T ss_dssp HHHTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 344445555554444443
No 275
>1yii_A Annexin A5, annexin V, lipocortin V, endonexin II; membrane binding, matrix vessicle, protein and metal binding protein; 1.42A {Gallus gallus} PDB: 1yj0_A 1ala_A 1hvd_A 1anx_A 1anw_A 1avh_A 1avr_A 1hak_B* 1hvf_A 1hve_A 1hvg_A 1a8a_A* 1a8b_A* 2ie7_A 1g5n_A 2ie6_A 1bcz_A 1n41_A 1bcw_A 2ran_A ...
Probab=20.06 E-value=4.7e+02 Score=23.33 Aligned_cols=107 Identities=15% Similarity=0.171 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHCCCCCChhHHHHHHHHHHHcC--CHHHHHHHHHHhhhCCCCCCChh------hHHHHHHHHHHcCCHh
Q 047178 126 HRVVQVIKWMLSKGQGSTMGTCGQLIRALDMDH--RAEEAHKFWEKRIGIDLHSVPWQ------LCKSMIAIYYRNNMLE 197 (287)
Q Consensus 126 ~~A~qv~~~M~~~G~~pd~~TYnaLI~~y~K~G--~leeA~~lF~eM~~~g~~sv~~~------tyNsmIsgY~k~G~~e 197 (287)
.+|..+.+-| +|.+.|- .+||+-+|... ++.+-.+.|..+-.+++ ...+ -|-.+|-+++..-.-.
T Consensus 18 ~Da~~L~~A~--kG~Gtde---~~lieIL~~rs~~q~~~I~~~Y~~~~g~~L--~~dl~~e~sG~f~~ll~~l~~~~~~~ 90 (320)
T 1yii_A 18 ADAEALRKAM--KGMGTDE---ETILKILTSRNNAQRQEIASAFKTLFGRDL--VDDLKSELTGKFETLMVSLMRPARIF 90 (320)
T ss_dssp HHHHHHHHHH--SSSSCCH---HHHHHHHHHSCHHHHHHHHHHHHHHHSCCH--HHHHHHHCCHHHHHHHHHHHSCHHHH
T ss_pred HHHHHHHHHh--cCCCCCH---HHHHHHHhcCCHHHHHHHHHHHHHHHCcCH--HHHHhhhcCchHHHHHHHHccChHHH
Q ss_pred HHHHHHHHHHHCCCCCChHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHH
Q 047178 198 RLIKLFKGLEAFDRKPPEKSIVQRVADAYEVLGLLEEKERVLEKYKDLF 246 (287)
Q Consensus 198 eA~~Lf~eM~~~Gi~PD~~~Ty~sLI~a~~k~G~leeA~~ll~~m~~l~ 246 (287)
+|..|.+-| .|.-.|+ .++|..+|.... .+-..+.+.|...|
T Consensus 91 DA~~L~~A~--kg~Gtde----~~lieIL~~Rs~-~ql~~I~~aY~~~y 132 (320)
T 1yii_A 91 DAHALKHAI--KGAGTNE----KVLTEILASRTP-AEVQNIKQVYMQEY 132 (320)
T ss_dssp HHHHHHHHH--SSSSCCH----HHHHHHHHHSCH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHh--ccCCCch----HHHhHHHhcCCH-HHHHHHHHHHHHhh
Done!