Query 047179
Match_columns 130
No_of_seqs 119 out of 324
Neff 4.6
Searched_HMMs 46136
Date Fri Mar 29 08:31:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047179.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047179hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd01958 HPS_like HPS_like: Hyd 100.0 5.1E-38 1.1E-42 221.2 0.1 84 45-129 2-85 (85)
2 PF14547 Hydrophob_seed: Hydro 100.0 6.3E-37 1.4E-41 215.4 5.0 84 46-130 1-85 (85)
3 PF14368 LTP_2: Probable lipid 96.7 0.00011 2.3E-09 50.1 -2.8 57 70-129 39-96 (96)
4 smart00499 AAI Plant lipid tra 96.6 0.00045 9.7E-09 44.3 -0.2 73 49-129 3-79 (79)
5 cd01959 nsLTP2 nsLTP2: Non-spe 96.3 0.00038 8.3E-09 46.7 -1.9 62 52-125 4-65 (66)
6 cd04660 nsLTP_like nsLTP_like: 95.9 0.001 2.2E-08 44.6 -1.3 68 52-129 6-73 (73)
7 PF07172 GRP: Glycine rich pro 94.4 0.033 7.2E-07 39.9 2.5 25 1-25 1-25 (95)
8 PF00234 Tryp_alpha_amyl: Prot 94.0 0.0034 7.3E-08 42.5 -3.3 67 52-129 13-90 (90)
9 cd00010 AAI_LTSS AAI_LTSS: Alp 91.1 0.054 1.2E-06 34.5 -0.3 48 71-120 13-62 (63)
10 cd01960 nsLTP1 nsLTP1: Non-spe 86.8 0.12 2.6E-06 35.4 -1.1 67 52-124 8-79 (89)
11 PF03058 Sar8_2: Sar8.2 family 31.9 37 0.00081 24.6 2.0 13 1-17 1-13 (93)
12 PF07803 GSG-1: GSG1-like prot 30.0 1.1E+02 0.0025 23.0 4.4 52 1-61 2-55 (118)
No 1
>cd01958 HPS_like HPS_like: Hydrophobic Protein from Soybean (HPS)-like subfamily; composed of proteins with similarity to HPS, a small hydrophobic protein with unknown function related to cereal-type alpha-amylase inhibitors and lipid transfer proteins. In addition to HPS, members of this subfamily include a hybrid proline-rich protein (HyPRP) from maize, a dark-inducible protein (LeDI-2) from Lithospermum erythrorhizon, maize ZRP3 protein, and rice RcC3 protein. HyPRP is an embryo-specific protein that contains an N-terminal proline-rich domain and a C-terminal HPS-like cysteine-rich domain. It has been suggested that HyPRP may be involved in the stability and defense of the developing embryo. LeDI-2 is a root-specific protein that may be involved in regulating the biosynthesis of shikonin derivatives in L. erythrorhizon. Maize ZRP3 and rice RcC3 are root-specific proteins whose functions are yet to be determined. It has been reported that ZRP3 largely accumulates in a distinct subset
Probab=100.00 E-value=5.1e-38 Score=221.17 Aligned_cols=84 Identities=63% Similarity=1.197 Sum_probs=82.1
Q ss_pred CCCCcccccccccccccccccccccCCCCCCCCcccccCCccchhhHHHHHHHhhhhccccccccchhhhhhhhcCCCCC
Q 047179 45 RRCPRDALKLGVCAKVLDGTVGAVVGNPPDFPCCSVLQGLLDLEAAVCLCTAIKANILGININIPISLSLLINTCGKKLP 124 (130)
Q Consensus 45 ~~CP~d~lkL~vCa~vL~gl~~~~lg~p~~~~CC~li~gL~dldAA~CLCtaikanvlgi~~~ipv~l~~lln~Cgk~~P 124 (130)
++||+|++|||+|+|||+ ++++.+|+++.++||++|+||+|+|||+|||||||+|++||++|+|+++++++|.|||++|
T Consensus 2 ~~CP~dalkLgvCanvL~-l~~~~~g~~~~~~CC~ll~GL~dldAA~CLCtaikan~lgi~~~~pv~l~llln~CGk~~P 80 (85)
T cd01958 2 PTCPRDALKLGVCANVLG-LSLLLLGTPAVQPCCPLIGGLADLDAAVCLCTAIKANILGISINIPVALSLLLNSCGRNVP 80 (85)
T ss_pred CCCCcchHHhchhHhhhh-ccccccCCCccchHHHHHcCchhhheeeeeeeeeeccccCcccccChhHHHHHHHHcCcCC
Confidence 589999999999999996 8899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcc
Q 047179 125 SDFIC 129 (130)
Q Consensus 125 ~gf~C 129 (130)
+||+|
T Consensus 81 ~gf~C 85 (85)
T cd01958 81 PGFTC 85 (85)
T ss_pred CCCcC
Confidence 99998
No 2
>PF14547 Hydrophob_seed: Hydrophobic seed protein
Probab=100.00 E-value=6.3e-37 Score=215.44 Aligned_cols=84 Identities=70% Similarity=1.340 Sum_probs=82.1
Q ss_pred CCCcccccccccccccccccccccCCCCCCCCcccccCCccchhhHHHHHHHhhhhcc-ccccccchhhhhhhhcCCCCC
Q 047179 46 RCPRDALKLGVCAKVLDGTVGAVVGNPPDFPCCSVLQGLLDLEAAVCLCTAIKANILG-ININIPISLSLLINTCGKKLP 124 (130)
Q Consensus 46 ~CP~d~lkL~vCa~vL~gl~~~~lg~p~~~~CC~li~gL~dldAA~CLCtaikanvlg-i~~~ipv~l~~lln~Cgk~~P 124 (130)
+||+|++||++|+||| |++++.+|.|++++||++|+||+|+|||+|||+|+|+|++| |++|+|++++++||.|||++|
T Consensus 1 ~CP~d~lkLgvC~~vL-~l~~~~~g~~~~~~CC~li~gL~d~~AA~CLC~aika~vlg~i~~~ipv~l~~lln~CGk~~p 79 (85)
T PF14547_consen 1 TCPRDALKLGVCANVL-GLVNLVIGNPPRQPCCSLIAGLADLDAAVCLCTAIKANVLGLINVNIPVALNLLLNACGKTVP 79 (85)
T ss_pred CCCCcchhhhhhhhhh-hhhccccCCCCCCCcChHHhCcccchHHHHHHHHHhhhcccccccccccHHHHHHHHhCCcCc
Confidence 6999999999999999 59999999999999999999999999999999999999999 899999999999999999999
Q ss_pred CCCccC
Q 047179 125 SDFICA 130 (130)
Q Consensus 125 ~gf~C~ 130 (130)
+||+|+
T Consensus 80 ~gf~C~ 85 (85)
T PF14547_consen 80 SGFTCP 85 (85)
T ss_pred CCCcCC
Confidence 999996
No 3
>PF14368 LTP_2: Probable lipid transfer; PDB: 2RKN_A 1N89_A 1TUK_A.
Probab=96.70 E-value=0.00011 Score=50.06 Aligned_cols=57 Identities=32% Similarity=0.731 Sum_probs=34.3
Q ss_pred CCCCCCCCcccccCCccchhhHHHHHHHhhhh-ccccccccchhhhhhhhcCCCCCCCCcc
Q 047179 70 GNPPDFPCCSVLQGLLDLEAAVCLCTAIKANI-LGININIPISLSLLINTCGKKLPSDFIC 129 (130)
Q Consensus 70 g~p~~~~CC~li~gL~dldAA~CLCtaikanv-lgi~~~ipv~l~~lln~Cgk~~P~gf~C 129 (130)
+..|.++||..++.+.+.| ..|||..++... .++++|..-.+ .|...||...|. ++|
T Consensus 39 ~~~Ps~~CC~~l~~~~~~~-~~ClC~~~~~~~~~~~~in~~~a~-~Lp~~Cg~~~~~-~~C 96 (96)
T PF14368_consen 39 GPAPSAACCSALKSVVQAD-PPCLCQLLNSPGAPGFGINVTRAL-ALPAACGVPVPP-SKC 96 (96)
T ss_dssp -----HHHHHHHCC----H-CCHHHCCCC-CCHCHHCCTCHHHH-HHHHHCTSS-S-----
T ss_pred CCCCCHHHHHHHHHhccCC-CCCHHHhcCccccccCCcCHHHHH-HHHHHcCCCCCC-CCC
Confidence 3567789999999997744 899999999987 55566655544 478899999998 887
No 4
>smart00499 AAI Plant lipid transfer protein / seed storage protein / trypsin-alpha amylase inhibitor domain family.
Probab=96.61 E-value=0.00045 Score=44.25 Aligned_cols=73 Identities=38% Similarity=0.705 Sum_probs=49.4
Q ss_pred cccccccccccccccccccccCCCCCCCCcccccCCccchhhHHHHHHHhhhhcccc----ccccchhhhhhhhcCCCCC
Q 047179 49 RDALKLGVCAKVLDGTVGAVVGNPPDFPCCSVLQGLLDLEAAVCLCTAIKANILGIN----INIPISLSLLINTCGKKLP 124 (130)
Q Consensus 49 ~d~lkL~vCa~vL~gl~~~~lg~p~~~~CC~li~gL~dldAA~CLCtaikanvlgi~----~~ipv~l~~lln~Cgk~~P 124 (130)
....++..|...+.+.. ...++.++||..++++. ...|+|.+++....++. ++. .....|.+.||...|
T Consensus 3 ~~~~~~~~c~~~~~~~~---~~~~p~~~CC~~l~~~~---~~~C~C~~~~~~~~~~~~~~~~~~-~~a~~lp~~C~~~~~ 75 (79)
T smart00499 3 QVLLQLAPCLSYLTGGS---PGAPPSQQCCSQLRGLN---SAQCRCLALRAAVLGILEIPGVNA-QNAASLPSACGVPPP 75 (79)
T ss_pred hhhhhHHhhHHHHcCCC---CCCCCchHHHHHHHHhc---ccCCcchhhhcccccccchhhhhH-HHHHhhHHhcCCCCC
Confidence 33445556776663111 12356688999999887 67799999998877654 243 344568889999887
Q ss_pred CCCcc
Q 047179 125 SDFIC 129 (130)
Q Consensus 125 ~gf~C 129 (130)
. +.|
T Consensus 76 ~-~~C 79 (79)
T smart00499 76 Y-TDC 79 (79)
T ss_pred C-CCC
Confidence 5 554
No 5
>cd01959 nsLTP2 nsLTP2: Non-specific lipid-transfer protein type 2 (nsLTP2) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. In addition to lipid transport and assembly, nsLTPs also play a key role in the defense of plants against pathogens. There are two closely-related types of nsLTPs, types 1 and 2, which differ in protein sequence, molecular weight, and biological properties. nsLTPs contain an internal hydrophobic cavity, which serves as the binding site for lipids. nsLTP2 can bind lipids and sterols. Structure studies of rice nsLTPs show that the plasticity of the hydrophobic cavity is an important factor in ligand binding. The flexibility of the sLTP2 cavity allows its binding to rigid sterol molecules, whereas nsLTP1 cannot bind sterols despite its larger cavity size. The resulting nsLTP2/sterol complexes may bind to receptors that trigger defense responses. nsLTP2 gene exp
Probab=96.35 E-value=0.00038 Score=46.70 Aligned_cols=62 Identities=29% Similarity=0.629 Sum_probs=47.1
Q ss_pred ccccccccccccccccccCCCCCCCCcccccCCccchhhHHHHHHHhhhhccccccccchhhhhhhhcCCCCCC
Q 047179 52 LKLGVCAKVLDGTVGAVVGNPPDFPCCSVLQGLLDLEAAVCLCTAIKANILGININIPISLSLLINTCGKKLPS 125 (130)
Q Consensus 52 lkL~vCa~vL~gl~~~~lg~p~~~~CC~li~gL~dldAA~CLCtaikanvlgi~~~ipv~l~~lln~Cgk~~P~ 125 (130)
.+|..|..... .|.+|+.+||..++. +-.|||.-+|...++.-+|.+-+.. |.+.||..+|.
T Consensus 4 ~~L~~C~~ai~------~~~~Ps~~CC~~Lk~-----~~~CLC~y~~~p~l~~~i~~~~A~~-l~~~Cgv~~P~ 65 (66)
T cd01959 4 TQLSPCLPAIL------GGSPPSAACCAKLKE-----QQSCLCQYAKNPSLKQYVNSPNARK-VLAACGVPYPN 65 (66)
T ss_pred hhcccCHHHHh------CCCCCCHHHHHHHhc-----CCCCeeeeecCccHHhhcCcHHHHH-HHHHcCCCCCC
Confidence 47888887753 356888999999996 2379999998866664466666655 78899999874
No 6
>cd04660 nsLTP_like nsLTP_like: Non-specific lipid-transfer protein (nsLTP)-like subfamily; composed of predominantly uncharacterized proteins with similarity to nsLTPs, including Medicago truncatula MtN5, the root-specific Phaseolus vulgaris PVR3, Antirrhinum majus FIL1, and Lilium longiflorum LIM3. Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. The MtN5 gene is induced during root nodule development. FIL1 is thought to be important in petal and stamen formation. The LIM3 gene is induced during the early prophase stage of meiosis in lily microsporocytes.
Probab=95.95 E-value=0.001 Score=44.61 Aligned_cols=68 Identities=29% Similarity=0.551 Sum_probs=46.0
Q ss_pred ccccccccccccccccccCCCCCCCCcccccCCccchhhHHHHHHHhhhhccccccccchhhhhhhhcCCCCCCCCcc
Q 047179 52 LKLGVCAKVLDGTVGAVVGNPPDFPCCSVLQGLLDLEAAVCLCTAIKANILGININIPISLSLLINTCGKKLPSDFIC 129 (130)
Q Consensus 52 lkL~vCa~vL~gl~~~~lg~p~~~~CC~li~gL~dldAA~CLCtaikanvlgi~~~ipv~l~~lln~Cgk~~P~gf~C 129 (130)
.+|..|...+.|- .-..+|.+.||+-|+.+ |. .|+|..++...+.+ +|..- ...|.+.||..+|. ++|
T Consensus 6 ~~L~~C~~yl~~~---~~~~~Ps~~CC~~vk~~---~~-~C~C~~~~~~~~~~-i~~~~-a~~Lp~~Cgv~~p~-~~C 73 (73)
T cd04660 6 DLLAECQPYVTGP---NPPPPPSRECCAALRRA---DL-PCLCRYKTSLVLQI-IDPDK-AVYLPAKCGLPLPP-SSC 73 (73)
T ss_pred HHHHHHHHHHcCC---CCCCCCCHHHHHHHHcC---Cc-CCEeeccCCCcccc-cCHHH-HHHHHHHcCCCCCC-CCC
Confidence 4566777766311 00123567899999974 22 39999998876653 55544 44588999999999 988
No 7
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=94.43 E-value=0.033 Score=39.87 Aligned_cols=25 Identities=20% Similarity=0.258 Sum_probs=17.2
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHhC
Q 047179 1 MDSKRSIWITVFLSINIISFALVSG 25 (130)
Q Consensus 1 MAsk~~~~~al~l~lnll~f~~~s~ 25 (130)
||||+...+++||++.||++|-+++
T Consensus 1 MaSK~~llL~l~LA~lLlisSevaa 25 (95)
T PF07172_consen 1 MASKAFLLLGLLLAALLLISSEVAA 25 (95)
T ss_pred CchhHHHHHHHHHHHHHHHHhhhhh
Confidence 9999754556667666666666665
No 8
>PF00234 Tryp_alpha_amyl: Protease inhibitor/seed storage/LTP family This is a small subfamily; InterPro: IPR003612 This domain is found is several proteins, including plant lipid transfer proteins [], seed storage proteins [] and trypsin-alpha amylase inhibitors [, ]. The domain forms a four-helical bundle in a right-handed superhelix with a folded leaf topology, which is stabilised by disulphide bonds, and which has an internal cavity. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; PDB: 1BFA_A 1BEA_A 1MID_A 1BE2_A 1LIP_A 3GSH_A 1JTB_A 1UVC_B 1BV2_A 1UVB_A ....
Probab=93.99 E-value=0.0034 Score=42.55 Aligned_cols=67 Identities=27% Similarity=0.533 Sum_probs=48.1
Q ss_pred ccccccccccccccccccCCCCCCCCcccccCCccchhhHHHHHHHhhhhccc-----------cccccchhhhhhhhcC
Q 047179 52 LKLGVCAKVLDGTVGAVVGNPPDFPCCSVLQGLLDLEAAVCLCTAIKANILGI-----------NINIPISLSLLINTCG 120 (130)
Q Consensus 52 lkL~vCa~vL~gl~~~~lg~p~~~~CC~li~gL~dldAA~CLCtaikanvlgi-----------~~~ipv~l~~lln~Cg 120 (130)
..+..|...+.+-. ..+.++||.-|++| -..|.|.+||..+.++ .++... ...|.+.||
T Consensus 13 ~~l~~c~~~~~~~~-----~~~~~~CC~~L~~l----~~~C~C~~i~~~~~~~~~q~~~~~~~~~~~~~~-a~~LP~~C~ 82 (90)
T PF00234_consen 13 VRLSPCLPYLQGGC-----QQPSQQCCQQLRQL----DPQCRCEAIRQMVRQVIQQQQQGGQEMQIMAQR-AQNLPSMCN 82 (90)
T ss_dssp SHHHGGHHHHTTSS-----SHHHHHHHHHHHHH----HHHHHHHHHHHHHHHSHHCTSTCSHHHHHHHHH-HHHHHHHTT
T ss_pred ccccccHHHHhccc-----ccchHHHhHHHHHH----hHHhhCHHHHHHHHhhhhhhhhhHHHHHHHHHH-HHHHHHHCC
Confidence 45677776664211 13457899999988 8899999999998873 455434 455889999
Q ss_pred CCCCCCCcc
Q 047179 121 KKLPSDFIC 129 (130)
Q Consensus 121 k~~P~gf~C 129 (130)
..+|. |.|
T Consensus 83 v~~~~-~~C 90 (90)
T PF00234_consen 83 VSPPY-TDC 90 (90)
T ss_dssp SSSSS-S-G
T ss_pred CCCCC-CCC
Confidence 99887 665
No 9
>cd00010 AAI_LTSS AAI_LTSS: Alpha-Amylase Inhibitors (AAI), Lipid Transfer (LT) and Seed Storage (SS) Protein family; a protein family unique to higher plants that includes cereal-type alpha-amylase inhibitors, lipid transfer proteins, seed storage proteins, and similar proteins. Proteins in this family are known to play important roles, in defending plants from insects and pathogens, lipid transport between intracellular membranes, and nutrient storage. Many proteins of this family have been identified as allergens in humans. These proteins contain a common pattern of eight cysteines that form four disulfide bridges.
Probab=91.14 E-value=0.054 Score=34.48 Aligned_cols=48 Identities=27% Similarity=0.603 Sum_probs=31.7
Q ss_pred CCCCCCCcccccCCccchhhHHHHHHHhhhhccc-cc-cccchhhhhhhhcC
Q 047179 71 NPPDFPCCSVLQGLLDLEAAVCLCTAIKANILGI-NI-NIPISLSLLINTCG 120 (130)
Q Consensus 71 ~p~~~~CC~li~gL~dldAA~CLCtaikanvlgi-~~-~ipv~l~~lln~Cg 120 (130)
..|.++||.-++.+.+.| ..|||..+|...... .+ |. -....|.+.||
T Consensus 13 ~~Ps~~CC~~l~~~~~~~-~~ClC~~~~~~~~~~~~~~~~-~~a~~LP~~Cg 62 (63)
T cd00010 13 TAPPSDCCSGLKSVVKSD-PKCLCAALNGPGASLLGLKNA-TRALALPAACG 62 (63)
T ss_pred CCCChHHHHHHHHHHhcC-hhhHHHHHcCccccccCcccH-HHHHhchHhcC
Confidence 356789999999887664 469999999865432 11 22 22344666676
No 10
>cd01960 nsLTP1 nsLTP1: Non-specific lipid-transfer protein type 1 (nsLTP1) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. In addition to lipid transport and assembly, nsLTPs also play a key role in the defense of plants against pathogens. There are two closely-related types of nsLTPs, types 1 and 2, which differ in protein sequence, molecular weight, and biological properties. nsLTPs contain an internal hydrophobic cavity, which serves as the binding site for lipids. The hydrophobic cavity accommodates various fatty acid ligands containing from ten to 18 carbon atoms. In general, the cavity is larger in nsLTP1 than in nsLTP2. nsLTP1 proteins are located in extracellular layers and in vacuolar structures. They may be involved in the formation of cutin layers on plant surfaces by transporting cutin monomers. Many nsLTP1 proteins have been characterized as allergens in humans.
Probab=86.76 E-value=0.12 Score=35.40 Aligned_cols=67 Identities=30% Similarity=0.535 Sum_probs=43.0
Q ss_pred ccccccccccccccccccCCCCCCCCcccccCCccc----hhhHHHHHHHhhhhcccc-ccccchhhhhhhhcCCCCC
Q 047179 52 LKLGVCAKVLDGTVGAVVGNPPDFPCCSVLQGLLDL----EAAVCLCTAIKANILGIN-INIPISLSLLINTCGKKLP 124 (130)
Q Consensus 52 lkL~vCa~vL~gl~~~~lg~p~~~~CC~li~gL~dl----dAA~CLCtaikanvlgi~-~~ipv~l~~lln~Cgk~~P 124 (130)
.+|.-|.+.+.|- +..|..+||.-++.|.+. +.-.|+|.-+|....++. +|..-++ .|-..||-..|
T Consensus 8 ~~l~~C~~y~~g~-----~~~Ps~~CC~~v~~l~~~~~t~~~~~~~C~C~~~~~~~~~~i~~~~a~-~LP~~C~v~~~ 79 (89)
T cd01960 8 SLLAPCLGYLTGG-----GPAPSPACCSGVKSLNGLAKTTADRQAACNCLKSAAAGISGLNPGRAA-GLPGKCGVSIP 79 (89)
T ss_pred hhHHhHHHHHhCC-----CCCCChHHhhhhHHHhhccCCCCchhhhhhcccccccccCCCCHHHHH-hChHhcccCCC
Confidence 4677788777522 135678899999988654 223466666777666554 5544443 47788987754
No 11
>PF03058 Sar8_2: Sar8.2 family; InterPro: IPR004297 Members of this family are found in Solanaceae spp. plants, a taxonomic group (family) that includes pepper and tobacco plant species. Synthesis of these proteins is induced by Tobacco mosaic virus and salicylic acid []; indeed they are thought to be involved in the development of systemic acquired resistance (SAR) after an initial hypersensitive response to microbial infection [, ]. SAR is characterised by long-lasting resistance to infection by a wide range of pathogens, extending to plant tissues distant from the initial infection site [].
Probab=31.86 E-value=37 Score=24.57 Aligned_cols=13 Identities=38% Similarity=0.680 Sum_probs=9.1
Q ss_pred CCCCchhHHHHHHHHHH
Q 047179 1 MDSKRSIWITVFLSINI 17 (130)
Q Consensus 1 MAsk~~~~~al~l~lnl 17 (130)
|++|+ -+||.|+|
T Consensus 1 M~~Kt----nlfl~lSL 13 (93)
T PF03058_consen 1 MVSKT----NLFLCLSL 13 (93)
T ss_pred Ccchh----hhHHHHHH
Confidence 89986 34666666
No 12
>PF07803 GSG-1: GSG1-like protein; InterPro: IPR012478 This family contains sequences bearing similarity to a region of GSG1 (Q9Z1H7 from SWISSPROT), a protein specifically expressed in testicular germ cells []. It is possible that over expression of the human homologue may be involved in tumourigenesis of human testicular germ cell tumours []. The region in question has four highly conserved cysteine residues.
Probab=30.03 E-value=1.1e+02 Score=22.96 Aligned_cols=52 Identities=17% Similarity=0.402 Sum_probs=22.1
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHhC-CCC-CCCCCCCCCCCCCCCCCCCCccccccccccccc
Q 047179 1 MDSKRSIWITVFLSINIISFALVSG-CNT-CVQPRPIPNPNPNPTSRRCPRDALKLGVCAKVL 61 (130)
Q Consensus 1 MAsk~~~~~al~l~lnll~f~~~s~-~~~-cp~p~p~p~p~p~p~~~~CP~d~lkL~vCa~vL 61 (130)
|.++.++.++++|.+--|+|++++- ..+ |-...-.|+| -| +-.|-.-|.++-
T Consensus 2 ~sr~~Ra~Ls~~ln~LAL~~S~tA~~sSyWC~GTqKVpKP-------lC--~~~~~~~Ci~~~ 55 (118)
T PF07803_consen 2 MSRRQRALLSLILNLLALAFSTTALLSSYWCEGTQKVPKP-------LC--GKGKGTNCIHFP 55 (118)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHhcccccccceecCCC-------CC--CccccCcCcCCC
Confidence 4455544444333322233333332 223 7654333332 45 334555566554
Done!