Query 047179
Match_columns 130
No_of_seqs 119 out of 324
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 14:46:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047179.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047179hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1hyp_A Hydrophobic protein fro 100.0 8.9E-32 3E-36 186.6 2.0 73 45-130 6-78 (80)
2 1n89_A Lipid transfer protein; 96.5 0.00024 8.1E-09 46.4 -1.1 60 53-124 6-65 (67)
3 1l6h_A LTP2, non-specific lipi 96.5 0.00025 8.6E-09 46.5 -1.1 60 53-124 7-66 (69)
4 2rkn_A DIR1 protein, AT5G48485 95.5 0.0024 8.3E-08 42.2 0.2 70 45-125 3-75 (77)
5 1siy_A LTP 1, NS-LTP1, nonspec 93.5 0.0067 2.3E-07 41.4 -1.6 69 47-124 3-78 (91)
6 2alg_A Non-specific lipid tran 93.4 0.003 1E-07 43.3 -3.4 66 51-124 8-79 (92)
7 1bwo_A NS-LTP1, nonspecific li 89.9 0.014 4.9E-07 39.7 -3.2 66 51-124 7-78 (90)
8 1afh_A Maize nonspecific lipid 89.4 0.025 8.4E-07 38.7 -2.3 71 47-124 4-80 (93)
9 2ljo_A Non-specific lipid-tran 85.0 0.16 5.6E-06 34.8 -0.2 70 53-129 10-88 (93)
10 1t12_A LTP 1, nonspecific lipi 84.1 0.083 2.8E-06 36.0 -2.0 65 51-124 8-78 (91)
No 1
>1hyp_A Hydrophobic protein from soybean; hydrophobic SEED protein; 1.80A {Glycine max} SCOP: a.52.1.1
Probab=99.96 E-value=8.9e-32 Score=186.59 Aligned_cols=73 Identities=41% Similarity=0.986 Sum_probs=66.9
Q ss_pred CCCCcccccccccccccccccccccCCCCCCCCcccccCCccchhhHHHHHHHhhhhccccccccchhhhhhhhcCCCCC
Q 047179 45 RRCPRDALKLGVCAKVLDGTVGAVVGNPPDFPCCSVLQGLLDLEAAVCLCTAIKANILGININIPISLSLLINTCGKKLP 124 (130)
Q Consensus 45 ~~CP~d~lkL~vCa~vL~gl~~~~lg~p~~~~CC~li~gL~dldAA~CLCtaikanvlgi~~~ipv~l~~lln~Cgk~~P 124 (130)
++|| |||+|+|||||.+ | +.++|||+|+||+|+|||+||||||| +||| +|+|+++++|+|.|||++|
T Consensus 6 ~~CP----kLgvCanvL~g~~----~--~~~~CC~Ll~GL~dleAAvCLCtaik--~Lgi-lnlpv~L~llln~Cgk~~P 72 (80)
T 1hyp_A 6 PSCP----DLSICLNILGGSL----G--TVDDCCALIGGLGDIEAIVCLCIQLR--ALGI-LNLNRNLQLILNSCGRSYP 72 (80)
T ss_dssp CCSC----CCGGGGGGGGTCC----T--THHHHHHHHHTSCHHHHHHHHHHHHH--HHTC-SCHHHHHHHHHHHTTCSSC
T ss_pred CCCC----chhHHHHHhCcCC----C--CCCccchhhhCcchhhhhhhhhhhcc--ccce-eecChhHHHHHHHhCCcCc
Confidence 5899 8999999997543 2 56899999999999999999999999 4899 9999999999999999999
Q ss_pred CCCccC
Q 047179 125 SDFICA 130 (130)
Q Consensus 125 ~gf~C~ 130 (130)
+||+|+
T Consensus 73 ~gF~C~ 78 (80)
T 1hyp_A 73 SNATCP 78 (80)
T ss_dssp CCCCCS
T ss_pred CCCCCC
Confidence 999996
No 2
>1n89_A Lipid transfer protein; lipid transport; HET: PGM; NMR {Triticum turgidum subsp} SCOP: a.52.1.1 PDB: 1tuk_A*
Probab=96.53 E-value=0.00024 Score=46.38 Aligned_cols=60 Identities=30% Similarity=0.641 Sum_probs=45.2
Q ss_pred cccccccccccccccccCCCCCCCCcccccCCccchhhHHHHHHHhhhhccccccccchhhhhhhhcCCCCC
Q 047179 53 KLGVCAKVLDGTVGAVVGNPPDFPCCSVLQGLLDLEAAVCLCTAIKANILGININIPISLSLLINTCGKKLP 124 (130)
Q Consensus 53 kL~vCa~vL~gl~~~~lg~p~~~~CC~li~gL~dldAA~CLCtaikanvlgi~~~ipv~l~~lln~Cgk~~P 124 (130)
+|..|...+. -|.+|..+||.-+++ ...|+|..+|.-.++..||.+.+.+ |...||..+|
T Consensus 6 ~L~pC~~~v~------~~~~Ps~~CC~~lk~-----~~~ClC~~~k~~~~~~~in~~~A~~-Lp~~Cgv~~P 65 (67)
T 1n89_A 6 QLAVCASAIL------SGAKPSGECCGNLRA-----QQGCFCQYAKDPTYGQYIRSPHARD-TLTSCGLAVP 65 (67)
T ss_dssp TTHHHHHHHT------TCCCCCHHHHHHHHH-----HSSHHHHGGGCSTTHHHHTCHHHHH-HHHHHTSCCS
T ss_pred hcccCHHHHc------CCCCCCHHHHHhhCC-----CCCCCCccccCcccccccCHHHHHH-HHHHcCCCCC
Confidence 5777877763 244677789999984 4889999999766664566666665 7789999988
No 3
>1l6h_A LTP2, non-specific lipid transfer protein; NSLTP2, plant LTP, lipid transport; NMR {Oryza sativa} SCOP: a.52.1.1
Probab=96.50 E-value=0.00025 Score=46.49 Aligned_cols=60 Identities=32% Similarity=0.669 Sum_probs=45.4
Q ss_pred cccccccccccccccccCCCCCCCCcccccCCccchhhHHHHHHHhhhhccccccccchhhhhhhhcCCCCC
Q 047179 53 KLGVCAKVLDGTVGAVVGNPPDFPCCSVLQGLLDLEAAVCLCTAIKANILGININIPISLSLLINTCGKKLP 124 (130)
Q Consensus 53 kL~vCa~vL~gl~~~~lg~p~~~~CC~li~gL~dldAA~CLCtaikanvlgi~~~ipv~l~~lln~Cgk~~P 124 (130)
+|..|.+.+. -|.+|..+||.-+++ ...|+|..+|...++..||.+.+.+ |...||..+|
T Consensus 7 ~L~pC~~~v~------~~~~Ps~~CC~~lk~-----~~~ClC~~~k~~~~~~~in~~~A~~-Lp~~Cgv~~P 66 (69)
T 1l6h_A 7 QLTVCTGAIA------GGARPTAACCSSLRA-----QQGCFCQFAKDPRYGRYVNSPNARK-AVSSCGIALP 66 (69)
T ss_dssp THHHHHHHHT------TCCSTTHHHHHHHHH-----HHHHHHHHTTCSSHHHHTTTTTGGG-CCCCCSSCSC
T ss_pred hcccCHHHHc------CCCCCCHHHHHhhCC-----CCCCCCccccCcccccccCHHHHHH-HHHHcCCCCC
Confidence 6778877763 134677789999984 4899999998766655567666666 7789999987
No 4
>2rkn_A DIR1 protein, AT5G48485; LTP, defense signaling protein, signaling protein, lipid TRA; HET: LP3; 1.60A {Arabidopsis thaliana}
Probab=95.54 E-value=0.0024 Score=42.19 Aligned_cols=70 Identities=24% Similarity=0.511 Sum_probs=47.9
Q ss_pred CCCCcccccccccccccccccccccCCCCCCCCcccccCCccchhhHHHHHHHh---hhhccccccccchhhhhhhhcCC
Q 047179 45 RRCPRDALKLGVCAKVLDGTVGAVVGNPPDFPCCSVLQGLLDLEAAVCLCTAIK---ANILGININIPISLSLLINTCGK 121 (130)
Q Consensus 45 ~~CP~d~lkL~vCa~vL~gl~~~~lg~p~~~~CC~li~gL~dldAA~CLCtaik---anvlgi~~~ipv~l~~lln~Cgk 121 (130)
..|-.+..+|..|.+.+.+ . . ..+|...||.-+++ +| -.|||..++ +.-+|| |...++. |...||.
T Consensus 3 ~~C~~~~~~L~pC~~yv~~--~-~-~~~Ps~~CC~~lk~-~~---~~ClC~~~~~~~~~~~gi--n~~~A~~-LP~~Cgv 71 (77)
T 2rkn_A 3 DLCGMSQDELNECKPAVSK--E-N-PTSPSQPCCTALQH-AD---FACLCGYKNSPWLGSFGV--DPELASA-LPKQCGL 71 (77)
T ss_dssp CBTTBCHHHHHHHGGGGBS--S-S-CCCCCHHHHHHHTT-CC---HHHHHTTTTCHHHHHHTB--CHHHHHH-HHHHTTC
T ss_pred chHHhHHHhHhhCHHHHcC--C-C-CCCCCHHHHHHHHh-cC---cCCcCcccCCcchhhcCc--CHHHHHH-HHHHcCC
Confidence 3577777788889887742 0 0 13566789999998 34 389999888 444454 4445544 7889999
Q ss_pred CCCC
Q 047179 122 KLPS 125 (130)
Q Consensus 122 ~~P~ 125 (130)
.+|.
T Consensus 72 ~~p~ 75 (77)
T 2rkn_A 72 ANAP 75 (77)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 8773
No 5
>1siy_A LTP 1, NS-LTP1, nonspecific lipid-transfer protein 1; alpha helix, lipid binding protein; NMR {Vigna radiata var}
Probab=93.47 E-value=0.0067 Score=41.42 Aligned_cols=69 Identities=29% Similarity=0.553 Sum_probs=44.9
Q ss_pred CCcccccccccccccccccccccCCCCCCCCcccccCCccc-----h-hhHHHHHHHhhhhccc-cccccchhhhhhhhc
Q 047179 47 CPRDALKLGVCAKVLDGTVGAVVGNPPDFPCCSVLQGLLDL-----E-AAVCLCTAIKANILGI-NINIPISLSLLINTC 119 (130)
Q Consensus 47 CP~d~lkL~vCa~vL~gl~~~~lg~p~~~~CC~li~gL~dl-----d-AA~CLCtaikanvlgi-~~~ipv~l~~lln~C 119 (130)
|-....+|..|.+.+.| |.+|..+||.-+++|.+. | -+.|+|. |...-++ .+|...+.. |...|
T Consensus 3 C~~v~~~L~pCl~yv~~------~~~Ps~~CC~~lk~l~~~a~t~~d~~~~ClC~--k~~~~~~~~in~~~A~~-LP~~C 73 (91)
T 1siy_A 3 CGQVQGNLAQCIGFLQK------GGVVPPSCCTGVKNILNSSRTTADRRAVCSCL--KAAAGAVRGINPNNAEA-LPGKC 73 (91)
T ss_dssp TTTTHHHHHHHHHHHTS------CSCCCHHHHHHHHHHHTTTCSSHHHHHHHHHH--HHHTTCCSSCCHHHHHH-HHHHH
T ss_pred HHHHHHhccCcHHHHhC------CCCCcHHHHHHHHHHHhhhccCCCCCcCCccc--CCcccccCCcCHHHHHH-HHHHc
Confidence 44445577888887742 234667899999987543 3 2689997 4332223 455555555 88899
Q ss_pred CCCCC
Q 047179 120 GKKLP 124 (130)
Q Consensus 120 gk~~P 124 (130)
|..+|
T Consensus 74 gv~~p 78 (91)
T 1siy_A 74 GVNIP 78 (91)
T ss_dssp TCCCS
T ss_pred CCCCC
Confidence 99875
No 6
>2alg_A Non-specific lipid transfer protein; LTP, NS-LTP, FOOD allergen, lipid transport; HET: DAO P6G; 2.30A {Prunus persica} PDB: 2b5s_A*
Probab=93.39 E-value=0.003 Score=43.25 Aligned_cols=66 Identities=23% Similarity=0.505 Sum_probs=45.1
Q ss_pred cccccccccccccccccccCCCCCCCCcccccCCccc-----h-hhHHHHHHHhhhhccccccccchhhhhhhhcCCCCC
Q 047179 51 ALKLGVCAKVLDGTVGAVVGNPPDFPCCSVLQGLLDL-----E-AAVCLCTAIKANILGININIPISLSLLINTCGKKLP 124 (130)
Q Consensus 51 ~lkL~vCa~vL~gl~~~~lg~p~~~~CC~li~gL~dl-----d-AA~CLCtaikanvlgi~~~ipv~l~~lln~Cgk~~P 124 (130)
..+|..|.+.+.| |.++..+||.-+++|... | -+.|||...++.-++ .+|...+.. |...||-.+|
T Consensus 8 ~~~L~pCl~y~~~------~~~p~~~CC~~lk~l~~~a~t~~d~~~~ClC~~~~~~~~~-~in~~~A~~-LP~~Cgv~~p 79 (92)
T 2alg_A 8 SSSLAPCIPYVRG------GGAVPPACCNGIRNVNNLARTTPDRQAACNCLKQLSASVP-GVNPNNAAA-LPGKCGVSIP 79 (92)
T ss_dssp HHHHGGGHHHHHH------CSCCCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHST-TCCHHHHHH-HHHHTTCCCS
T ss_pred HHhccCcHHHHcC------CCCCCHHHHHHHHHHHhhhcccCCCCcCCccccCcccccC-ccChHHHHH-HHHHcCCCCC
Confidence 3467788887742 234556899999987631 2 158999977776664 455555555 8889999876
No 7
>1bwo_A NS-LTP1, nonspecific lipid-transfer protein; wheat, lipid binding, crystallography; HET: LPC; 2.10A {Triticum aestivum} SCOP: a.52.1.1 PDB: 1cz2_A* 1gh1_A 1be2_A* 1jtb_A* 1lip_A 1mid_A* 3cee_A* 3gsh_A*
Probab=89.88 E-value=0.014 Score=39.73 Aligned_cols=66 Identities=26% Similarity=0.476 Sum_probs=41.8
Q ss_pred cccccccccccccccccccCCCCCCCCcccccCCccc---h---hhHHHHHHHhhhhccccccccchhhhhhhhcCCCCC
Q 047179 51 ALKLGVCAKVLDGTVGAVVGNPPDFPCCSVLQGLLDL---E---AAVCLCTAIKANILGININIPISLSLLINTCGKKLP 124 (130)
Q Consensus 51 ~lkL~vCa~vL~gl~~~~lg~p~~~~CC~li~gL~dl---d---AA~CLCtaikanvlgi~~~ipv~l~~lln~Cgk~~P 124 (130)
..+|..|.+.+.| |.+|..+||.-+++|... . -+.|+|..-.+.-++ .+|...+.. |...||-.+|
T Consensus 7 ~~~L~pCl~y~~~------~~~Ps~~CC~~lk~l~~~a~t~~dr~~~ClClk~~~~~~~-~in~~~A~~-LP~~C~v~~p 78 (90)
T 1bwo_A 7 DSLVRPCLSYVQG------GPGPSGQCCDGVKNLHNQARSQSDRQSACNCLKGIARGIH-NLNEDNARS-IPPKCGVNLP 78 (90)
T ss_dssp HHHHGGGHHHHTT------CSCCCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHTTCT-TCCHHHHHT-HHHHHTCCCS
T ss_pred HHhhcccHHHHcC------CCCCCHHHhHHHHHHHhhccCCCCCCccCcCccCchhccC-CcCHHHHHH-HHHHcCCCCC
Confidence 3467788877742 233667899999987632 1 268999433333332 455555554 7789998765
No 8
>1afh_A Maize nonspecific lipid transfer protein; lipid-binding protein, molecular modeling,; NMR {Zea mays} SCOP: a.52.1.1 PDB: 1fk0_A* 1fk1_A* 1fk2_A* 1fk3_A* 1fk4_A* 1fk5_A* 1fk6_A* 1fk7_A* 1mzl_A 1mzm_A* 1bv2_A 1rzl_A* 1uva_A* 1uvb_A* 1uvc_A*
Probab=89.41 E-value=0.025 Score=38.70 Aligned_cols=71 Identities=28% Similarity=0.536 Sum_probs=44.9
Q ss_pred CCcccccccccccccccccccccCCCCCCCCcccccCCcc---chh---hHHHHHHHhhhhccccccccchhhhhhhhcC
Q 047179 47 CPRDALKLGVCAKVLDGTVGAVVGNPPDFPCCSVLQGLLD---LEA---AVCLCTAIKANILGININIPISLSLLINTCG 120 (130)
Q Consensus 47 CP~d~lkL~vCa~vL~gl~~~~lg~p~~~~CC~li~gL~d---ldA---A~CLCtaikanvlgi~~~ipv~l~~lln~Cg 120 (130)
|-....+|..|.+.+.|- +.+|..+||.-+++|.+ -.+ +.|+|....+.-++ .+|...++. |-..||
T Consensus 4 C~~v~~~L~pCl~y~~~~-----~~~Ps~~CC~gv~~l~~~a~t~~dr~~~ClC~~~~~~~~~-~in~~~A~~-LP~~C~ 76 (93)
T 1afh_A 4 CGQVASAIAPCISYARGQ-----GSGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAGVS-GLNAGNAAS-IPSKCG 76 (93)
T ss_dssp SHHHHHHHGGGHHHHTTS-----CCSCCHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHTTST-TCCHHHHHH-HHHHHH
T ss_pred hHHHHHhccCcHHHHcCC-----CCCChHHHHHHHHHHHHhhcCCCCCcccCEeecccccccc-CcCHHHHHH-HHHHcC
Confidence 433345778888887421 23455689999998853 122 68999765555453 345445554 778899
Q ss_pred CCCC
Q 047179 121 KKLP 124 (130)
Q Consensus 121 k~~P 124 (130)
-.+|
T Consensus 77 v~~p 80 (93)
T 1afh_A 77 VSIP 80 (93)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 8765
No 9
>2ljo_A Non-specific lipid-transfer protein 2; lipid transport; NMR {Lens culinaris}
Probab=84.97 E-value=0.16 Score=34.84 Aligned_cols=70 Identities=26% Similarity=0.534 Sum_probs=44.8
Q ss_pred cccccccccccccccccCCCCCCCCcccccCCccc----hhhHHHHHHHhhhhcc-ccccccchhhhhhhhcCCCCC---
Q 047179 53 KLGVCAKVLDGTVGAVVGNPPDFPCCSVLQGLLDL----EAAVCLCTAIKANILG-ININIPISLSLLINTCGKKLP--- 124 (130)
Q Consensus 53 kL~vCa~vL~gl~~~~lg~p~~~~CC~li~gL~dl----dAA~CLCtaikanvlg-i~~~ipv~l~~lln~Cgk~~P--- 124 (130)
.|.-|.+.+.| |..+..+||.-+++|.+. +--.|+|..+|...-+ ..+|..-+.. |-..||-.+|
T Consensus 10 ~L~pCl~Yv~g------~~~p~~~CC~gv~~l~~~a~t~~dr~~~C~clk~~a~~~~~in~~~a~~-LP~~CgV~~p~~I 82 (93)
T 2ljo_A 10 DLSPCLTYLTG------GPGPSPQCCGGVKKLLAAANTTPDRQAACNCLKSAAGSITKLNTNNAAA-LPGKCGVNIPYKI 82 (93)
T ss_dssp HHHHHHHHHTT------SSCCCHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHGGGCTTCCHHHHHH-HHHHHTCCCSSCC
T ss_pred HHHhHHHHHcC------CCCCCCchhhHHHHHHHHhcCcccHHHHHHhHHhhhhccCCcCHHHHHh-hhHhcCCCCCCCC
Confidence 45566666531 234567899988877543 2247899888875533 2455444444 7889999988
Q ss_pred -CCCcc
Q 047179 125 -SDFIC 129 (130)
Q Consensus 125 -~gf~C 129 (130)
..+.|
T Consensus 83 s~~~dC 88 (93)
T 2ljo_A 83 STTTNC 88 (93)
T ss_dssp STTCCG
T ss_pred CCCCCC
Confidence 56666
No 10
>1t12_A LTP 1, nonspecific lipid-transfer protein 1; cystein rich protein, lipid transport; NMR {Nicotiana tabacum}
Probab=84.10 E-value=0.083 Score=35.98 Aligned_cols=65 Identities=26% Similarity=0.568 Sum_probs=41.4
Q ss_pred cccccccccccccccccccCCCCCCCCcccccCCccch------hhHHHHHHHhhhhccccccccchhhhhhhhcCCCCC
Q 047179 51 ALKLGVCAKVLDGTVGAVVGNPPDFPCCSVLQGLLDLE------AAVCLCTAIKANILGININIPISLSLLINTCGKKLP 124 (130)
Q Consensus 51 ~lkL~vCa~vL~gl~~~~lg~p~~~~CC~li~gL~dld------AA~CLCtaikanvlgi~~~ipv~l~~lln~Cgk~~P 124 (130)
..+|..|.+.+.| |.+|. +||.-+++|...- -+.|+|..--++-++ .+|...++. |-..||-.+|
T Consensus 8 ~~~L~pCl~y~~~------~~~P~-~CC~gv~~l~~~a~t~~dr~~~ClClk~~~~~~~-~in~~~A~~-LP~~C~v~~p 78 (91)
T 1t12_A 8 TSNLAPCLAYLRN------TGPLG-RCCGGVKALVNSARTTEDRQIACTCLKSAAGAIS-GINLGKAAG-LPSTCGVNIP 78 (91)
T ss_dssp HHHTHHHHHHHTT------SSCCT-THHHHHHHHHHTTCSTHHHHHHHHHHHHHHHHCT-TCCHHHHHH-HHHHTTCCCS
T ss_pred HHhccCcHHHHcC------CCChH-HHHHHHHHHHhhccCCCCCCccCCCccccccccC-CcChhHHHH-HHHHcCCCCC
Confidence 4467778877742 12255 8999999876431 278999633334453 455445554 7789998765
Done!