BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047182
(207 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1XHN|A Chain A, The Crystal Structure Of Cellular Repressor Of E1a-
Stimulated Genes (Creg)
pdb|1XHN|B Chain B, The Crystal Structure Of Cellular Repressor Of E1a-
Stimulated Genes (Creg)
pdb|1XHN|C Chain C, The Crystal Structure Of Cellular Repressor Of E1a-
Stimulated Genes (Creg)
pdb|1XHN|D Chain D, The Crystal Structure Of Cellular Repressor Of E1a-
Stimulated Genes (Creg)
Length = 184
Score = 128 bits (321), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 67/167 (40%), Positives = 101/167 (60%), Gaps = 6/167 (3%)
Query: 40 PHPNDAAAYARWLVSQNSWGVLSTISS--GLGGAPFGNVVSFSDGLPNEGSGVPYFYLTT 97
P DAA AR++ + WG L+TIS+ + G PF +V+S SDG P GSGVPYFYL+
Sbjct: 14 PPREDAARVARFVTHVSDWGALATISTLEAVRGRPFADVLSLSDGPPGAGSGVPYFYLSP 73
Query: 98 LDPTASNALKDKRSSLAISEYPLGTCGKR--DPEDPVCAKITLTGKLVLVDVNSKAAEFA 155
L + SN ++ ++L + C K DP+ P+C I L+G + VN + A
Sbjct: 74 LQLSVSNLQENPYATLTXTLAQTNFCKKHGFDPQSPLCVHIXLSG--TVTKVNETEXDIA 131
Query: 156 RNALFAKHPEMKGWPKDHNFQTFKLEIDDIFLINWFGGPKPLTVDQY 202
+++LF +HPE K WP HN+ KL I +I+++++FGGPK +T ++Y
Sbjct: 132 KHSLFIRHPEXKTWPSSHNWFFAKLNITNIWVLDYFGGPKIVTPEEY 178
>pdb|2ARZ|A Chain A, Crystal Structure Of Protein Of Unknown Function From
Pseudomonas Aeruginosa
pdb|2ARZ|B Chain B, Crystal Structure Of Protein Of Unknown Function From
Pseudomonas Aeruginosa
Length = 247
Score = 35.8 bits (81), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 64/162 (39%), Gaps = 21/162 (12%)
Query: 44 DAAAYARWLVSQNSWGVLSTISSGLGGAPFGNVVSFSDGLPNEGSGVPYFYLTTLDPTAS 103
+AA AR L+ + VLST S G PFG+VV + + G P ++ +
Sbjct: 7 EAAKNARELLLKEYRAVLSTHSKKWPGFPFGSVVPYC----LDAEGRPLILISRIAQHTH 62
Query: 104 NALKDKRSSLAISEYPLGTCGKRDPEDPVCAKITLTGKLVLV----DVNSKAAEFARNAL 159
N D R S+ + G+R ED I G+L L+ + + A
Sbjct: 63 NLQADPRCSMLV--------GERGAED-----IQAVGRLTLLAEARQLAEEEVAAAAERY 109
Query: 160 FAKHPEMKGWPKDHNFQTFKLEIDDIFLINWFGGPKPLTVDQ 201
+ PE + + H+F + L+ I FG L ++
Sbjct: 110 YRYFPESADYHRVHDFDFWVLQPVQWRFIGGFGAIHWLAAER 151
>pdb|2VWI|A Chain A, Structure Of The Osr1 Kinase, A Hypertension Drug Target
pdb|2VWI|B Chain B, Structure Of The Osr1 Kinase, A Hypertension Drug Target
pdb|2VWI|C Chain C, Structure Of The Osr1 Kinase, A Hypertension Drug Target
pdb|2VWI|D Chain D, Structure Of The Osr1 Kinase, A Hypertension Drug Target
Length = 303
Score = 27.7 bits (60), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 33 IPAISNKPHPNDAAAYARWLVSQNSWGVLSTISSG 67
I A+S HPN + Y ++V W V+ +S G
Sbjct: 64 IQAMSQCHHPNIVSYYTSFVVKDELWLVMKLLSGG 98
>pdb|3DAK|A Chain A, Crystal Structure Of Domain-Swapped Osr1 Kinase Domain
pdb|3DAK|B Chain B, Crystal Structure Of Domain-Swapped Osr1 Kinase Domain
pdb|3DAK|C Chain C, Crystal Structure Of Domain-Swapped Osr1 Kinase Domain
pdb|3DAK|D Chain D, Crystal Structure Of Domain-Swapped Osr1 Kinase Domain
Length = 290
Score = 27.7 bits (60), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 33 IPAISNKPHPNDAAAYARWLVSQNSWGVLSTISSG 67
I A+S HPN + Y ++V W V+ +S G
Sbjct: 59 IQAMSQCHHPNIVSYYTSFVVKDELWLVMKLLSGG 93
>pdb|3AHG|A Chain A, H64a Mutant Of Phosphoketolase From Bifidobacterium Breve
Complexed With A Tricyclic Ring Form Of Thiamine
Diphosphate
Length = 845
Score = 27.3 bits (59), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Query: 24 TQDSVEGRLIPAISNKPHPNDAAAYARWLVSQNSWGVLSTISSGLGGAPFGNVVSFSDGL 83
T+D V+ RL+ A P N A+ L++ + + + G GG P G S+ DG
Sbjct: 73 TRDDVKHRLVGAWGTTPGLNFLLAHINRLIADHQQNTVFIMGPGHGG-PAGTSQSYVDGT 131
Query: 84 PNE 86
E
Sbjct: 132 YTE 134
>pdb|3DNH|A Chain A, The Crystal Structure Of The Protein Atu2129 (Unknown
Function) From Agrobacterium Tumefaciens Str. C58
pdb|3DNH|B Chain B, The Crystal Structure Of The Protein Atu2129 (Unknown
Function) From Agrobacterium Tumefaciens Str. C58
Length = 258
Score = 26.9 bits (58), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 35/153 (22%), Positives = 65/153 (42%), Gaps = 17/153 (11%)
Query: 42 PNDAAAYARWLVSQNSWGVLSTISSGLGGAPFGNVVSFSDGLPNEGSGVPYFYLTTLDPT 101
P +A AR ++ + L+T+ + G P+ + E G P+F+ L
Sbjct: 25 PFEAVRVARDVLHTSRTAALATLDP-VSGYPYTTATNIG----IEPDGTPFFFAAGLTLH 79
Query: 102 ASNALKDKRSSLAISEYPLGTCGKRDPEDPVCAKITLTGKLVLVDVNSKAAEFARNALFA 161
A N D R S+ ++ + GK D ++TL G+ + + AR A
Sbjct: 80 ARNXETDARISVTLAPF-----GKGDAL--TLPRLTLVGRADRIGPDEVPLAIAR--YIA 130
Query: 162 KHPEMKGWPKDHNFQTFKLEIDDIFLINWFGGP 194
++P+ K + + + ++L + + IN GGP
Sbjct: 131 RYPKAKLYLSLPDTRLYRLRTEGV-QIN--GGP 160
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,467,595
Number of Sequences: 62578
Number of extensions: 262537
Number of successful extensions: 617
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 610
Number of HSP's gapped (non-prelim): 8
length of query: 207
length of database: 14,973,337
effective HSP length: 94
effective length of query: 113
effective length of database: 9,091,005
effective search space: 1027283565
effective search space used: 1027283565
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)