BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047182
(207 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8IUH2|CREG2_HUMAN Protein CREG2 OS=Homo sapiens GN=CREG2 PE=1 SV=1
Length = 290
Score = 132 bits (333), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 65/173 (37%), Positives = 104/173 (60%), Gaps = 6/173 (3%)
Query: 37 SNKPHPNDAAAYARWLVSQNSWGVLSTISS--GLGGAPFGNVVSFSDGLPNEGSGVPYFY 94
S P P AA AR L + WG L+T+S+ + G PFGN + SDG N +G+P+FY
Sbjct: 115 SAPPGPRLRAATARSLAHASVWGCLATVSTHKKIQGLPFGNCLPVSDGPFNNSTGIPFFY 174
Query: 95 LTTLDPTASNALKDKRSSLAISEYPLGTCGKR--DPEDPVCAKITLTGKLVLVDVNSKAA 152
+T DP ++ +K+ +SL + E C K DPEDP C ++TLTG+++ V + +
Sbjct: 175 MTAKDPVVADLMKNPMASLMLPESEGEFCRKNIVDPEDPRCVQLTLTGQMIAV--SPEEV 232
Query: 153 EFARNALFAKHPEMKGWPKDHNFQTFKLEIDDIFLINWFGGPKPLTVDQYLHA 205
EFA+ A+F++HP M+ WP+ + + K+ I+ I+L W+GG ++ ++Y A
Sbjct: 233 EFAKQAMFSRHPGMRKWPRQYEWFFMKMRIEHIWLQKWYGGASSISREEYFKA 285
>sp|O75629|CREG1_HUMAN Protein CREG1 OS=Homo sapiens GN=CREG1 PE=1 SV=1
Length = 220
Score = 131 bits (329), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 68/167 (40%), Positives = 103/167 (61%), Gaps = 6/167 (3%)
Query: 40 PHPNDAAAYARWLVSQNSWGVLSTISS--GLGGAPFGNVVSFSDGLPNEGSGVPYFYLTT 97
P DAA AR++ + WG L+TIS+ + G PF +V+S SDG P GSGVPYFYL+
Sbjct: 50 PPREDAARVARFVTHVSDWGALATISTLEAVRGRPFADVLSLSDGPPGAGSGVPYFYLSP 109
Query: 98 LDPTASNALKDKRSSLAISEYPLGTCGKR--DPEDPVCAKITLTGKLVLVDVNSKAAEFA 155
L + SN ++ ++L ++ C K DP+ P+C I L+G + VN + A
Sbjct: 110 LQLSVSNLQENPYATLTMTLAQTNFCKKHGFDPQSPLCVHIMLSG--TVTKVNETEMDIA 167
Query: 156 RNALFAKHPEMKGWPKDHNFQTFKLEIDDIFLINWFGGPKPLTVDQY 202
+++LF +HPEMK WP HN+ KL I +I+++++FGGPK +T ++Y
Sbjct: 168 KHSLFIRHPEMKTWPSSHNWFFAKLNITNIWVLDYFGGPKIVTPEEY 214
>sp|Q8BGC9|CREG2_MOUSE Protein CREG2 OS=Mus musculus GN=Creg2 PE=1 SV=1
Length = 288
Score = 127 bits (320), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 63/170 (37%), Positives = 102/170 (60%), Gaps = 6/170 (3%)
Query: 40 PHPNDAAAYARWLVSQNSWGVLSTISS--GLGGAPFGNVVSFSDGLPNEGSGVPYFYLTT 97
P P A AR L +SWG L+T+S+ + G PFG+ ++ SDG + +G+P+FY+T
Sbjct: 116 PGPRVHAGTARSLAHASSWGCLATVSTHEKIQGLPFGSCLAISDGPVHNSTGIPFFYMTA 175
Query: 98 LDPTASNALKDKRSSLAISEYPLGTCGKR--DPEDPVCAKITLTGKLVLVDVNSKAAEFA 155
DP ++ +K+ +SL + E C K DPEDP CA++TLTG++V V EFA
Sbjct: 176 KDPAVADLVKNPTASLVLPESEGEFCRKNIVDPEDPRCARLTLTGRMVTVPPGE--VEFA 233
Query: 156 RNALFAKHPEMKGWPKDHNFQTFKLEIDDIFLINWFGGPKPLTVDQYLHA 205
+ A+F++HP M+ WP+ + + K+ ++ I+L W+GG + ++Y A
Sbjct: 234 KQAMFSRHPGMRKWPRQYEWFFMKMWVEHIWLQKWYGGVSDIPREEYFKA 283
>sp|O88668|CREG1_MOUSE Protein CREG1 OS=Mus musculus GN=Creg1 PE=2 SV=1
Length = 220
Score = 123 bits (308), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 66/180 (36%), Positives = 104/180 (57%), Gaps = 10/180 (5%)
Query: 28 VEGRLIPAISNKPHPNDAAAYARWLVSQNSWGVLSTISS--GLGGAPFGNVVSFSDGLPN 85
V+ RL P P D AR++ + WG L+TIS+ + G PF +++S SDG P
Sbjct: 42 VDRRLPPL----PPREDGPRVARFVTHVSDWGSLATISTIKEVRGWPFADIISISDGPPG 97
Query: 86 EGSGVPYFYLTTLDPTASNALKDKRSSLAISEYPLGTCGKR--DPEDPVCAKITLTGKLV 143
EG+G PY YL+ L S+ ++ ++L +S C DP+ P+C I ++G
Sbjct: 98 EGTGEPYMYLSPLQQAVSDLQENPEATLTMSLAQTVYCRNHGFDPQSPLCVHIMMSG--T 155
Query: 144 LVDVNSKAAEFARNALFAKHPEMKGWPKDHNFQTFKLEIDDIFLINWFGGPKPLTVDQYL 203
+ VN ++AR++LF +HPEMK WP HN+ KL+I I+++++FGGPK +T ++Y
Sbjct: 156 VTKVNKTEEDYARDSLFVRHPEMKHWPSSHNWFFAKLKISRIWVLDYFGGPKVVTPEEYF 215
>sp|Q5ZJ73|CREG1_CHICK Protein CREG1 OS=Gallus gallus GN=CREG1 PE=2 SV=1
Length = 192
Score = 116 bits (291), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 68/173 (39%), Positives = 101/173 (58%), Gaps = 8/173 (4%)
Query: 40 PHPNDAAAYARWLVSQNSWGVLSTISS--GLGGAPFGNVVSFSDGLPNEGSGVP--YFYL 95
P P +AA AR+++ WG L+T+S+ GL G PF N+ S SDG P G G Y YL
Sbjct: 21 PPPEEAARMARFVLHNCDWGALATLSAQEGLRGRPFANIFSISDGAPGPGGGSGVPYLYL 80
Query: 96 TTLDPTASNALKDKRSSLAISEYPLGTCGKR--DPEDPVCAKITLTGKLVLVDVNSKAAE 153
T ++ + + + +SL +S C K DP++P+CA I G +V VN A
Sbjct: 81 TDMEISVQDLEVNSNASLTVSLAQTPYCKKHRYDPQNPLCAHIIFCGSIV--KVNDSEAA 138
Query: 154 FARNALFAKHPEMKGWPKDHNFQTFKLEIDDIFLINWFGGPKPLTVDQYLHAK 206
A+ ALF +HPEM+ WPKDHN+ K I +I+++++FGG K +T ++Y + K
Sbjct: 139 LAKKALFTRHPEMESWPKDHNWFYAKFNITNIWVLDYFGGLKIVTPEEYYNVK 191
>sp|Q8DVM7|RSMH_STRMU Ribosomal RNA small subunit methyltransferase H OS=Streptococcus
mutans serotype c (strain ATCC 700610 / UA159) GN=rsmH
PE=3 SV=1
Length = 316
Score = 31.6 bits (70), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 28/53 (52%)
Query: 132 VCAKITLTGKLVLVDVNSKAAEFARNALFAKHPEMKGWPKDHNFQTFKLEIDD 184
+ KI K L++ ++ AE ++A AK + KG P FQ ++E++D
Sbjct: 168 IARKIESARKEKLIETTAELAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVND 220
>sp|Q94J16|HFA4B_ORYSJ Heat stress transcription factor A-4b OS=Oryza sativa subsp.
japonica GN=HSFA4B PE=2 SV=1
Length = 440
Score = 31.2 bits (69), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 43/96 (44%), Gaps = 21/96 (21%)
Query: 73 FGNVVSFSDGLPNEGSGVPYFYLTTL------DP----------TASNALKDKRSSLAIS 116
FGN +S+ DG+P S V LT L DP T+S D SS ++
Sbjct: 261 FGNDISYDDGVPGPSSTV---VLTELHSPGESDPRVSSPPTRMRTSSAGAGDSHSSRDVA 317
Query: 117 EYPLGTCGKRDPEDPVCAKITLTGKLVLVDVNSKAA 152
E +C + P + +++ K+ +DVNS+ A
Sbjct: 318 ES--TSCAESPPIPQMHSRVDTRAKVSEIDVNSEPA 351
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.135 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 80,280,041
Number of Sequences: 539616
Number of extensions: 3283608
Number of successful extensions: 6818
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 6796
Number of HSP's gapped (non-prelim): 10
length of query: 207
length of database: 191,569,459
effective HSP length: 112
effective length of query: 95
effective length of database: 131,132,467
effective search space: 12457584365
effective search space used: 12457584365
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)