BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047185
(214 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2M2E|A Chain A, Solution Nmr Structure Of The Sant Domain Of Human Dnajc2,
Northeast Structural Genomics Consortium Target Hr8254a
Length = 73
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 35/58 (60%)
Query: 156 WNAGEDIALLNALKAFPKDVPLRWEKIAAAVPGRSKAACMKRFSDLKRDFRSSKAGDE 213
W E L ALK +P + P RW+KIA AVPGR+K CMKR+ +L ++ KA E
Sbjct: 6 WTTEEQKLLEQALKTYPVNTPERWKKIAEAVPGRTKKDCMKRYKELVEMVKAKKAAQE 63
Score = 31.6 bits (70), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Query: 67 ILKKQMVKNPVGKPKRWEVIAEAFNGRHRVESVIKKAKELGE 108
+L++ + PV P+RW+ IAEA GR + + +K+ KEL E
Sbjct: 13 LLEQALKTYPVNTPERWKKIAEAVPGRTK-KDCMKRYKELVE 53
>pdb|2CJJ|A Chain A, Crystal Structure Of The Myb Domain Of The Rad
Transcription Factor From Antirrhinum Majus
Length = 93
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 29/56 (51%)
Query: 156 WNAGEDIALLNALKAFPKDVPLRWEKIAAAVPGRSKAACMKRFSDLKRDFRSSKAG 211
W+A E+ A AL + KD P RW +A AV GR+ K + L D + ++G
Sbjct: 11 WSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKYIESG 66
>pdb|4EEF|G Chain G, Crystal Structure Of The Designed Inhibitor Protein
F-Hb80.4 In Complex With The 1918 Influenza Virus
Hemagglutinin.
pdb|4EEF|H Chain H, Crystal Structure Of The Designed Inhibitor Protein
F-Hb80.4 In Complex With The 1918 Influenza Virus
Hemagglutinin.
pdb|4EEF|I Chain I, Crystal Structure Of The Designed Inhibitor Protein
F-Hb80.4 In Complex With The 1918 Influenza Virus
Hemagglutinin
Length = 74
Score = 34.7 bits (78), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 22/43 (51%)
Query: 156 WNAGEDIALLNALKAFPKDVPLRWEKIAAAVPGRSKAACMKRF 198
W E+IA AL KD P RW+K+A V GR+ K +
Sbjct: 23 WKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHY 65
>pdb|1WGX|A Chain A, Solution Structure Of Rsgi Ruh-022, A Myb Dna-Binding
Domain In Human Cdna
Length = 73
Score = 33.9 bits (76), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 26/54 (48%)
Query: 156 WNAGEDIALLNALKAFPKDVPLRWEKIAAAVPGRSKAACMKRFSDLKRDFRSSK 209
WN E L A + PK P W ++AAAV RS C +++ + R S K
Sbjct: 11 WNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPRGKGSQK 64
>pdb|2CQQ|A Chain A, Solution Structure Of Rsgi Ruh-037, A Myb Dna-Binding
Domain In Human Cdna
Length = 72
Score = 33.9 bits (76), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 68 LKKQMVKNPVGKPKRWEVIAEAFNGRHRVESVIKKAKEL 106
L + MVK P G P RWE IA GR V V KAK+L
Sbjct: 19 LTRSMVKFPGGTPGRWEKIAHEL-GR-SVTDVTTKAKQL 55
>pdb|2CQR|A Chain A, Solution Structure Of Rsgi Ruh-043, A Myb Dna-Binding
Domain In Human Cdna
Length = 73
Score = 33.5 bits (75), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 24/46 (52%)
Query: 156 WNAGEDIALLNALKAFPKDVPLRWEKIAAAVPGRSKAACMKRFSDL 201
W + L AL+ +P+ W+KIA VP +SK C+ R+ L
Sbjct: 21 WTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLL 66
>pdb|3PZ9|A Chain A, Native Structure Of Endo-1,4-Beta-D-Mannanase From
Thermotoga Petrophila Rku-1
pdb|3PZG|A Chain A, I222 Crystal Form Of The Hyperthermostable
Endo-1,4-Beta-D-Mannanase From Thermotoga Petrophila
Rku-1
pdb|3PZI|A Chain A, Structure Of The Hyperthermostable
Endo-1,4-Beta-D-Mannanase From Thermotoga Petrophila
Rku-1 In Complex With Beta-D-Glucose
pdb|3PZM|A Chain A, Structure Of The Hyperthermostable
Endo-1,4-Beta-D-Mannanase From Thermotoga Petrophila
Rku-1 With Three Glycerol Molecules
pdb|3PZN|A Chain A, Structure Of The Hyperthermostable
Endo-1,4-Beta-D-Mannanase From Thermotoga Petrophila
Rku-1 With Citrate And Glycerol
pdb|3PZO|A Chain A, Structure Of The Hyperthermostable
Endo-1,4-Beta-D-Mannanase From Thermotoga Petrophila
Rku-1 In Complex With Three Maltose Molecules
pdb|3PZQ|A Chain A, Structure Of The Hyperthermostable
Endo-1,4-Beta-D-Mannanase From Thermotoga Petrophila
Rku-1 With Maltose And Glycerol
Length = 383
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 7/46 (15%)
Query: 84 EVIAEAFNGRHRVESVIKKAKELGEKKI-------DDSDSYNQFLK 122
E I+ A NG R++ I KAKELG K I DD NQ+++
Sbjct: 90 EGISNAQNGFERLDYTIAKAKELGIKLIIVLVNNWDDFGGMNQYVR 135
>pdb|3QR6|A Chain A, Crystal Structure Analysis Of H185f Mutant Of Human Clic1
Length = 241
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 33/89 (37%), Gaps = 3/89 (3%)
Query: 40 NESKGEKVEVLQRKSXXXXXXXXXXXXILKKQMVKNPVGKPKRWEVIAEAFNGRHRVESV 99
+E+ E V QRK +L K + V K R I EAF G HR S
Sbjct: 153 DETSAEDEGVSQRKFLDGNELTLADCNLLPKLFIVQVVCKKYRGFTIPEAFRGVHRYLSN 212
Query: 100 IKKAKELGEKKIDDSD---SYNQFLKNRK 125
+E DD + +Y Q K K
Sbjct: 213 AYAREEFASTCPDDEEIELAYEQVAKALK 241
>pdb|3SWL|A Chain A, Crystal Structure Analysis Of H74a Mutant Of Human Clic1
Length = 236
Score = 28.1 bits (61), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 33/89 (37%), Gaps = 3/89 (3%)
Query: 40 NESKGEKVEVLQRKSXXXXXXXXXXXXILKKQMVKNPVGKPKRWEVIAEAFNGRHRVESV 99
+E+ E V QRK +L K + V K R I EAF G HR S
Sbjct: 148 DETSAEDEGVSQRKFLDGNELTLADCNLLPKLHIVQVVCKKYRGFTIPEAFRGVHRYLSN 207
Query: 100 IKKAKELGEKKIDDSD---SYNQFLKNRK 125
+E DD + +Y Q K K
Sbjct: 208 AYAREEFASTCPDDEEIELAYEQVAKALK 236
>pdb|3O3T|A Chain A, Crystal Structure Analysis Of M32a Mutant Of Human Clic1
Length = 241
Score = 28.1 bits (61), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 33/89 (37%), Gaps = 3/89 (3%)
Query: 40 NESKGEKVEVLQRKSXXXXXXXXXXXXILKKQMVKNPVGKPKRWEVIAEAFNGRHRVESV 99
+E+ E V QRK +L K + V K R I EAF G HR S
Sbjct: 153 DETSAEDEGVSQRKFLDGNELTLADCNLLPKLHIVQVVCKKYRGFTIPEAFRGVHRYLSN 212
Query: 100 IKKAKELGEKKIDDSD---SYNQFLKNRK 125
+E DD + +Y Q K K
Sbjct: 213 AYAREEFASTCPDDEEIELAYEQVAKALK 241
>pdb|1K0O|A Chain A, Crystal Structure Of A Soluble Form Of Clic1. An
Intracellular Chloride Ion Channel
pdb|1K0O|B Chain B, Crystal Structure Of A Soluble Form Of Clic1. An
Intracellular Chloride Ion Channel
pdb|1K0N|A Chain A, Chloride Intracellular Channel 1 (Clic1) Complexed With
Glutathione
pdb|1K0N|B Chain B, Chloride Intracellular Channel 1 (Clic1) Complexed With
Glutathione
pdb|1K0M|A Chain A, Crystal Structure Of A Soluble Monomeric Form Of Clic1 At
1.4 Angstroms
pdb|1K0M|B Chain B, Crystal Structure Of A Soluble Monomeric Form Of Clic1 At
1.4 Angstroms
Length = 241
Score = 27.7 bits (60), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 33/89 (37%), Gaps = 3/89 (3%)
Query: 40 NESKGEKVEVLQRKSXXXXXXXXXXXXILKKQMVKNPVGKPKRWEVIAEAFNGRHRVESV 99
+E+ E V QRK +L K + V K R I EAF G HR S
Sbjct: 153 DETSAEDEGVSQRKFLDGNELTLADCNLLPKLHIVQVVCKKYRGFTIPEAFRGVHRYLSN 212
Query: 100 IKKAKELGEKKIDDSD---SYNQFLKNRK 125
+E DD + +Y Q K K
Sbjct: 213 AYAREEFASTCPDDEEIELAYEQVAKALK 241
>pdb|1RK4|A Chain A, Crystal Structure Of A Soluble Dimeric Form Of Oxidised
Clic1
pdb|1RK4|B Chain B, Crystal Structure Of A Soluble Dimeric Form Of Oxidised
Clic1
Length = 243
Score = 27.7 bits (60), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 33/89 (37%), Gaps = 3/89 (3%)
Query: 40 NESKGEKVEVLQRKSXXXXXXXXXXXXILKKQMVKNPVGKPKRWEVIAEAFNGRHRVESV 99
+E+ E V QRK +L K + V K R I EAF G HR S
Sbjct: 155 DETSAEDEGVSQRKFLDGNELTLADCNLLPKLHIVQVVCKKYRGFTIPEAFRGVHRYLSN 214
Query: 100 IKKAKELGEKKIDDSD---SYNQFLKNRK 125
+E DD + +Y Q K K
Sbjct: 215 AYAREEFASTCPDDEEIELAYEQVAKALK 243
>pdb|3UVH|A Chain A, Crystal Structure Analysis Of E81m Mutant Of Human Clic1
pdb|3UVH|B Chain B, Crystal Structure Analysis Of E81m Mutant Of Human Clic1
Length = 241
Score = 27.7 bits (60), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 33/89 (37%), Gaps = 3/89 (3%)
Query: 40 NESKGEKVEVLQRKSXXXXXXXXXXXXILKKQMVKNPVGKPKRWEVIAEAFNGRHRVESV 99
+E+ E V QRK +L K + V K R I EAF G HR S
Sbjct: 153 DETSAEDEGVSQRKFLDGNELTLADCNLLPKLHIVQVVCKKYRGFTIPEAFRGVHRYLSN 212
Query: 100 IKKAKELGEKKIDDSD---SYNQFLKNRK 125
+E DD + +Y Q K K
Sbjct: 213 AYAREEFASTCPDDEEIELAYEQVAKALK 241
>pdb|3P8W|A Chain A, Crystal Structure Analysis Of R29mE81M DOUBLE MUTANT OF
HUMAN CLIC1
Length = 241
Score = 27.7 bits (60), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 33/89 (37%), Gaps = 3/89 (3%)
Query: 40 NESKGEKVEVLQRKSXXXXXXXXXXXXILKKQMVKNPVGKPKRWEVIAEAFNGRHRVESV 99
+E+ E V QRK +L K + V K R I EAF G HR S
Sbjct: 153 DETSAEDEGVSQRKFLDGNELTLADCNLLPKLHIVQVVCKKYRGFTIPEAFRGVHRYLSN 212
Query: 100 IKKAKELGEKKIDDSD---SYNQFLKNRK 125
+E DD + +Y Q K K
Sbjct: 213 AYAREEFASTCPDDEEIELAYEQVAKALK 241
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.310 0.128 0.361
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,613,425
Number of Sequences: 62578
Number of extensions: 195490
Number of successful extensions: 407
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 398
Number of HSP's gapped (non-prelim): 21
length of query: 214
length of database: 14,973,337
effective HSP length: 95
effective length of query: 119
effective length of database: 9,028,427
effective search space: 1074382813
effective search space used: 1074382813
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 49 (23.5 bits)