Query 047185
Match_columns 214
No_of_seqs 134 out of 939
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 08:34:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047185.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047185hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0049 Transcription factor, 99.9 3.6E-23 7.9E-28 198.6 13.3 162 31-201 223-405 (939)
2 PLN03212 Transcription repress 99.9 2E-22 4.3E-27 175.9 12.1 103 55-204 23-125 (249)
3 PLN03091 hypothetical protein; 99.9 3E-21 6.5E-26 179.6 12.7 104 55-205 12-115 (459)
4 KOG0048 Transcription factor, 99.8 7.3E-20 1.6E-24 159.3 11.3 103 57-206 9-112 (238)
5 PF00249 Myb_DNA-binding: Myb- 99.4 6.6E-13 1.4E-17 88.6 5.2 46 153-201 1-47 (48)
6 KOG0050 mRNA splicing protein 99.3 3.5E-12 7.7E-17 120.9 8.1 107 54-209 4-110 (617)
7 PF13921 Myb_DNA-bind_6: Myb-l 99.3 6.2E-12 1.3E-16 86.9 7.2 41 60-105 1-41 (60)
8 PF00249 Myb_DNA-binding: Myb- 99.3 1.6E-11 3.4E-16 81.9 6.1 47 57-106 1-47 (48)
9 KOG0049 Transcription factor, 99.2 9.4E-11 2E-15 113.9 10.5 117 38-201 338-460 (939)
10 smart00717 SANT SANT SWI3, AD 99.2 8.2E-11 1.8E-15 75.9 5.9 46 154-202 2-47 (49)
11 cd00167 SANT 'SWI3, ADA2, N-Co 99.0 5.3E-10 1.1E-14 71.1 5.8 44 155-201 1-44 (45)
12 COG5147 REB1 Myb superfamily p 99.0 4E-10 8.7E-15 107.9 7.4 109 51-207 14-122 (512)
13 PF13921 Myb_DNA-bind_6: Myb-l 98.9 1.2E-09 2.6E-14 75.4 4.8 43 156-202 1-44 (60)
14 PLN03212 Transcription repress 98.9 2.2E-09 4.8E-14 94.4 5.4 55 150-207 22-78 (249)
15 smart00717 SANT SANT SWI3, AD 98.9 7E-09 1.5E-13 66.7 6.0 47 57-107 1-47 (49)
16 KOG0051 RNA polymerase I termi 98.8 3.1E-08 6.6E-13 96.3 9.6 104 56-203 383-508 (607)
17 cd00167 SANT 'SWI3, ADA2, N-Co 98.8 2.3E-08 4.9E-13 63.4 5.7 44 59-106 1-44 (45)
18 PLN03091 hypothetical protein; 98.6 7E-08 1.5E-12 90.9 5.1 54 150-206 11-66 (459)
19 KOG0048 Transcription factor, 98.5 3.7E-08 8E-13 86.0 2.8 54 151-207 7-62 (238)
20 KOG0051 RNA polymerase I termi 97.9 6E-05 1.3E-09 73.7 10.0 111 56-206 435-571 (607)
21 COG5259 RSC8 RSC chromatin rem 97.9 1.4E-05 3.1E-10 75.8 5.1 46 56-106 278-323 (531)
22 TIGR01557 myb_SHAQKYF myb-like 97.8 8.2E-05 1.8E-09 51.9 6.4 47 57-106 3-53 (57)
23 COG5259 RSC8 RSC chromatin rem 97.6 5.8E-05 1.3E-09 71.8 4.5 46 152-201 278-323 (531)
24 KOG0457 Histone acetyltransfer 97.5 0.00016 3.6E-09 68.1 6.0 48 150-200 69-116 (438)
25 KOG1279 Chromatin remodeling f 97.5 0.00013 2.8E-09 70.5 5.0 46 56-106 252-297 (506)
26 TIGR01557 myb_SHAQKYF myb-like 97.3 0.00083 1.8E-08 46.8 6.3 46 153-201 3-53 (57)
27 KOG1279 Chromatin remodeling f 97.3 0.00036 7.8E-09 67.4 5.4 48 150-201 250-297 (506)
28 KOG0457 Histone acetyltransfer 97.3 0.00045 9.8E-09 65.2 5.7 50 55-108 70-119 (438)
29 PF13837 Myb_DNA-bind_4: Myb/S 97.1 0.00044 9.6E-09 50.5 3.4 58 154-211 2-73 (90)
30 KOG0050 mRNA splicing protein 97.1 0.00046 1E-08 66.5 3.4 53 151-206 5-58 (617)
31 PF13837 Myb_DNA-bind_4: Myb/S 97.0 0.0011 2.4E-08 48.4 4.7 51 58-108 2-65 (90)
32 PLN03142 Probable chromatin-re 97.0 0.015 3.2E-07 60.8 14.1 146 55-208 822-990 (1033)
33 PF13325 MCRS_N: N-terminal re 96.4 0.044 9.6E-07 47.3 10.4 119 59-202 1-126 (199)
34 PF13873 Myb_DNA-bind_5: Myb/S 96.4 0.0056 1.2E-07 44.0 4.3 52 57-108 2-70 (78)
35 COG5147 REB1 Myb superfamily p 96.3 0.001 2.2E-08 64.4 0.2 105 55-203 289-397 (512)
36 KOG4167 Predicted DNA-binding 95.8 0.018 3.9E-07 57.8 5.9 48 151-202 617-664 (907)
37 COG5114 Histone acetyltransfer 95.1 0.035 7.6E-07 51.2 5.0 49 150-201 60-108 (432)
38 PF09111 SLIDE: SLIDE; InterP 95.1 0.062 1.3E-06 42.7 5.8 58 150-207 46-115 (118)
39 PF13873 Myb_DNA-bind_5: Myb/S 95.0 0.055 1.2E-06 38.8 4.9 56 153-208 2-75 (78)
40 PF12776 Myb_DNA-bind_3: Myb/S 94.2 0.082 1.8E-06 38.9 4.3 56 155-210 1-70 (96)
41 COG5114 Histone acetyltransfer 94.0 0.075 1.6E-06 49.1 4.5 48 55-106 61-108 (432)
42 TIGR02894 DNA_bind_RsfA transc 93.9 0.068 1.5E-06 44.7 3.7 50 152-202 3-55 (161)
43 KOG0724 Zuotin and related mol 92.9 0.13 2.7E-06 46.7 4.2 60 153-212 31-95 (335)
44 PF09111 SLIDE: SLIDE; InterP 92.1 0.27 5.9E-06 39.0 4.6 53 55-107 47-110 (118)
45 KOG2656 DNA methyltransferase 91.2 0.27 5.9E-06 46.4 4.2 56 151-210 128-189 (445)
46 KOG4282 Transcription factor G 91.0 0.64 1.4E-05 42.4 6.5 60 153-212 54-123 (345)
47 PRK13923 putative spore coat p 90.4 0.29 6.3E-06 41.3 3.4 52 151-202 3-56 (170)
48 KOG4167 Predicted DNA-binding 90.4 0.44 9.5E-06 48.3 5.1 48 55-107 617-664 (907)
49 COG5118 BDP1 Transcription ini 89.7 0.61 1.3E-05 44.2 5.2 46 55-105 363-408 (507)
50 PF12776 Myb_DNA-bind_3: Myb/S 89.5 1.1 2.4E-05 32.8 5.6 50 59-108 1-63 (96)
51 TIGR02894 DNA_bind_RsfA transc 89.1 0.39 8.5E-06 40.2 3.1 50 57-108 4-56 (161)
52 smart00595 MADF subfamily of S 87.9 0.71 1.5E-05 33.5 3.5 30 177-207 28-57 (89)
53 KOG3841 TEF-1 and related tran 87.2 1.2 2.6E-05 42.1 5.4 60 49-108 67-143 (455)
54 PF08914 Myb_DNA-bind_2: Rap1 85.4 2.2 4.8E-05 30.4 4.8 48 58-105 3-55 (65)
55 PF08914 Myb_DNA-bind_2: Rap1 84.6 1.8 3.9E-05 30.9 4.1 50 153-202 2-58 (65)
56 KOG4329 DNA-binding protein [G 84.0 1.7 3.7E-05 41.1 4.7 46 151-200 275-321 (445)
57 KOG1194 Predicted DNA-binding 84.0 2.6 5.7E-05 40.7 6.0 47 57-108 187-233 (534)
58 PF13404 HTH_AsnC-type: AsnC-t 83.8 3.4 7.3E-05 26.8 4.8 39 160-202 4-42 (42)
59 KOG2656 DNA methyltransferase 83.6 1.1 2.4E-05 42.5 3.3 49 53-105 126-179 (445)
60 KOG1194 Predicted DNA-binding 83.6 2.8 6.2E-05 40.5 6.1 48 151-202 185-232 (534)
61 COG5118 BDP1 Transcription ini 83.1 2.1 4.5E-05 40.7 4.9 45 151-199 363-407 (507)
62 KOG4282 Transcription factor G 82.3 2.8 6.2E-05 38.2 5.5 51 57-107 54-113 (345)
63 PF10545 MADF_DNA_bdg: Alcohol 82.3 1.8 3.9E-05 30.4 3.3 33 177-209 27-60 (85)
64 PRK13923 putative spore coat p 79.9 2.3 5.1E-05 35.9 3.7 50 57-108 5-57 (170)
65 smart00595 MADF subfamily of S 78.8 2.3 4.9E-05 30.8 2.9 24 82-107 29-52 (89)
66 PF11035 SnAPC_2_like: Small n 77.8 7.6 0.00016 36.0 6.6 57 151-207 19-75 (344)
67 KOG4468 Polycomb-group transcr 75.7 4.7 0.0001 40.4 5.0 49 151-203 86-144 (782)
68 PF10545 MADF_DNA_bdg: Alcohol 73.5 3.6 7.8E-05 28.8 2.8 27 81-107 27-53 (85)
69 PF04504 DUF573: Protein of un 69.4 11 0.00025 28.6 4.9 55 153-207 4-67 (98)
70 PF00674 DUP: DUP family; Int 67.5 5.8 0.00013 30.5 2.9 27 65-91 44-70 (108)
71 PRK11169 leucine-responsive tr 65.5 13 0.00028 30.3 4.8 42 159-204 14-55 (164)
72 PF07750 GcrA: GcrA cell cycle 64.5 11 0.00023 31.4 4.2 43 59-107 2-44 (162)
73 KOG0724 Zuotin and related mol 64.4 6.8 0.00015 35.4 3.2 50 57-106 31-84 (335)
74 PRK11179 DNA-binding transcrip 64.3 20 0.00043 28.8 5.6 42 159-204 9-50 (153)
75 smart00426 TEA TEA domain. 62.8 23 0.0005 25.7 5.0 46 57-102 3-64 (68)
76 smart00501 BRIGHT BRIGHT, ARID 59.3 41 0.00089 24.7 6.1 43 64-106 33-83 (93)
77 PF01285 TEA: TEA/ATTS domain 57.5 19 0.00041 34.6 5.0 52 55-106 47-112 (431)
78 PF11626 Rap1_C: TRF2-interact 52.7 7.3 0.00016 28.8 1.1 43 150-202 44-86 (87)
79 PLN03142 Probable chromatin-re 50.3 33 0.00072 36.5 5.8 47 150-199 821-867 (1033)
80 KOG4329 DNA-binding protein [G 48.2 51 0.0011 31.5 6.0 71 45-124 261-335 (445)
81 KOG3554 Histone deacetylase co 46.6 27 0.00059 34.3 4.1 46 152-201 284-330 (693)
82 COG1522 Lrp Transcriptional re 43.2 54 0.0012 25.6 4.8 41 160-204 9-49 (154)
83 PF07750 GcrA: GcrA cell cycle 43.2 35 0.00075 28.4 3.8 42 155-201 2-43 (162)
84 KOG3841 TEF-1 and related tran 42.0 73 0.0016 30.5 6.1 53 151-203 74-143 (455)
85 PF01285 TEA: TEA/ATTS domain 41.8 25 0.00055 33.7 3.1 52 150-201 46-112 (431)
86 KOG0385 Chromatin remodeling c 40.6 1.5E+02 0.0032 31.3 8.3 141 56-202 794-956 (971)
87 PF08281 Sigma70_r4_2: Sigma-7 37.5 1.1E+02 0.0024 19.6 5.8 27 176-203 26-52 (54)
88 smart00344 HTH_ASNC helix_turn 36.6 1.1E+02 0.0024 22.4 5.5 42 159-204 3-44 (108)
89 PF04504 DUF573: Protein of un 36.5 93 0.002 23.6 5.0 52 57-108 4-63 (98)
90 PF13404 HTH_AsnC-type: AsnC-t 35.5 1.2E+02 0.0026 19.4 5.3 38 64-106 4-41 (42)
91 PF05263 DUF722: Protein of un 34.8 1.1E+02 0.0023 24.8 5.3 50 154-207 80-129 (130)
92 KOG2009 Transcription initiati 33.8 41 0.0009 33.6 3.3 47 149-199 405-451 (584)
93 PF04545 Sigma70_r4: Sigma-70, 32.4 1.4E+02 0.003 19.1 5.7 44 157-206 6-49 (50)
94 PF06461 DUF1086: Domain of Un 31.1 1.7E+02 0.0037 24.2 5.9 48 151-199 36-83 (145)
95 COG5269 ZUO1 Ribosome-associat 31.1 44 0.00095 30.8 2.7 51 56-106 244-299 (379)
96 PF13325 MCRS_N: N-terminal re 30.6 1.1E+02 0.0024 26.5 5.0 53 55-108 71-127 (199)
97 PRK04387 hypothetical protein; 29.5 1.3E+02 0.0028 22.9 4.7 40 58-108 9-48 (90)
98 PF05256 UPF0223: Uncharacteri 29.3 98 0.0021 23.5 4.0 40 58-108 9-48 (88)
99 PF12451 VPS11_C: Vacuolar pro 29.2 50 0.0011 22.0 2.1 27 62-92 18-44 (49)
100 KOG1411 Aspartate aminotransfe 25.7 96 0.0021 29.6 4.0 48 57-106 331-392 (427)
101 KOG2009 Transcription initiati 25.5 58 0.0013 32.6 2.7 46 55-105 407-452 (584)
102 cd08777 Death_RIP1 Death Domai 25.1 1.2E+02 0.0027 22.3 3.9 25 61-92 1-25 (86)
103 PF01388 ARID: ARID/BRIGHT DNA 25.1 76 0.0016 23.0 2.7 42 64-105 37-86 (92)
104 COG1168 MalY Bifunctional PLP- 24.1 70 0.0015 30.5 2.9 21 56-76 171-191 (388)
105 PF01466 Skp1: Skp1 family, di 24.0 1.8E+02 0.0039 20.7 4.5 20 83-103 36-55 (78)
106 PRK11179 DNA-binding transcrip 23.6 1.9E+02 0.0042 23.0 5.1 44 63-111 9-52 (153)
No 1
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]
Probab=99.90 E-value=3.6e-23 Score=198.60 Aligned_cols=162 Identities=20% Similarity=0.291 Sum_probs=129.4
Q ss_pred ccccCCCcCCCCchhhhHhhhhhc----cCCCCCCHHHHHHHHHHHHhCCCCCCcchhhHHHHcCCCCCHHHHHHHHHH-
Q 047185 31 VENSNGSIGNESKGEKVEVLQRKS----EEEKEWNEEDIEILKKQMVKNPVGKPKRWEVIAEAFNGRHRVESVIKKAKE- 105 (214)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~WT~EE~~lL~kav~kyP~Gt~~RWe~IA~~lg~~RT~~qc~~k~k~- 105 (214)
..|||+||+|.++..++++||+|+ .++..|+.||++.|..+..-+ |. ..|++||..||++|+..||+.+++.
T Consensus 223 ~~ISn~dfEgsrS~~~~~~~W~n~l~P~~nk~~WS~EE~E~L~AiA~A~--~~-~~W~~IA~~Lgt~RS~yQC~~kF~t~ 299 (939)
T KOG0049|consen 223 TAISNFDFEGSRSEWAVKSKWYNELNPKWNKEHWSNEEVEKLKALAEAP--KF-VSWPMIALNLGTNRSSYQCMEKFKTE 299 (939)
T ss_pred HHhccccccccCCHHHHHHHHhhhcCCccchhccChHHHHHHHHHHhcc--cc-ccHHHHHHHhCCCcchHHHHHHHHHH
Confidence 349999999999999999999999 689999999999998877665 33 5899999999988999999999975
Q ss_pred ---hhhcccCCchhHHHHhhhhcccchhhhhc-------ccccccc-----ccccccc-CCCCCCCCCHHHHHHHHHHHH
Q 047185 106 ---LGEKKIDDSDSYNQFLKNRKAIDMRVVQE-------NCEDSKK-----ESQENVV-VGGGGGVWNAGEDIALLNALK 169 (214)
Q Consensus 106 ---l~~~~~~~~~~~~~~l~~~~~l~~r~~~~-------~~~~~~s-----~~~~~~~-~~~~~~~WT~eED~~L~~al~ 169 (214)
|++..|. +..|..|... +..+++.++ +++++.+ ++++.++ +++++++||.+||.+|..|+.
T Consensus 300 ~~~L~ekeWs--EEed~kL~al-V~~~~~nShI~w~kVV~Ympgr~~~qLI~R~~~~LdPsikhg~wt~~ED~~L~~AV~ 376 (939)
T KOG0049|consen 300 VSQLSEKEWS--EEEDTKLIAL-VKITSINSHIQWDKVVQYMPGRTRQQLITRFSHTLDPSVKHGRWTDQEDVLLVCAVS 376 (939)
T ss_pred HHHHHhhhcc--hhhhHHHHHH-HHHhhccCccchHHHHHhcCCcchhhhhhhheeccCccccCCCCCCHHHHHHHHHHH
Confidence 5555563 3444555443 112333222 2333322 5677664 789999999999999999999
Q ss_pred hCCCCCCCcHHHHHhhCCCCCHHHHHHHHHHH
Q 047185 170 AFPKDVPLRWEKIAAAVPGRSKAACMKRFSDL 201 (214)
Q Consensus 170 ~~p~~~~~rW~kIA~~vPGRT~~qc~~Ry~~L 201 (214)
+|+. ..|.+|-..|||||+.||+.||...
T Consensus 377 ~Yg~---kdw~k~R~~vPnRSdsQcR~RY~nv 405 (939)
T KOG0049|consen 377 RYGA---KDWAKVRQAVPNRSDSQCRERYTNV 405 (939)
T ss_pred HhCc---cchhhHHHhcCCccHHHHHHHHHHH
Confidence 9974 8999999999999999999999763
No 2
>PLN03212 Transcription repressor MYB5; Provisional
Probab=99.88 E-value=2e-22 Score=175.92 Aligned_cols=103 Identities=19% Similarity=0.244 Sum_probs=91.1
Q ss_pred cCCCCCCHHHHHHHHHHHHhCCCCCCcchhhHHHHcCCCCCHHHHHHHHHHhhhcccCCchhHHHHhhhhcccchhhhhc
Q 047185 55 EEEKEWNEEDIEILKKQMVKNPVGKPKRWEVIAEAFNGRHRVESVIKKAKELGEKKIDDSDSYNQFLKNRKAIDMRVVQE 134 (214)
Q Consensus 55 ~~~~~WT~EE~~lL~kav~kyP~Gt~~RWe~IA~~lg~~RT~~qc~~k~k~l~~~~~~~~~~~~~~l~~~~~l~~r~~~~ 134 (214)
.+.++||.|||++|..+|++|+ . .+|..||..|+.+||.+||++||..++ +|
T Consensus 23 lKRg~WT~EEDe~L~~lV~kyG--~-~nW~~IAk~~g~gRT~KQCReRW~N~L--------------------~P----- 74 (249)
T PLN03212 23 MKRGPWTVEEDEILVSFIKKEG--E-GRWRSLPKRAGLLRCGKSCRLRWMNYL--------------------RP----- 74 (249)
T ss_pred CcCCCCCHHHHHHHHHHHHHhC--c-ccHHHHHHhhhcCCCcchHHHHHHHhh--------------------ch-----
Confidence 5688999999999999999994 3 589999999976799999999996553 33
Q ss_pred ccccccccccccccCCCCCCCCCHHHHHHHHHHHHhCCCCCCCcHHHHHhhCCCCCHHHHHHHHHHHHHH
Q 047185 135 NCEDSKKESQENVVVGGGGGVWNAGEDIALLNALKAFPKDVPLRWEKIAAAVPGRSKAACMKRFSDLKRD 204 (214)
Q Consensus 135 ~~~~~~s~~~~~~~~~~~~~~WT~eED~~L~~al~~~p~~~~~rW~kIA~~vPGRT~~qc~~Ry~~L~~~ 204 (214)
.+.+++||.|||.+|+.++..|+ .+|..||..|||||+++|++||..+...
T Consensus 75 ---------------~I~kgpWT~EED~lLlel~~~~G----nKWs~IAk~LpGRTDnqIKNRWns~LrK 125 (249)
T PLN03212 75 ---------------SVKRGGITSDEEDLILRLHRLLG----NRWSLIAGRIPGRTDNEIKNYWNTHLRK 125 (249)
T ss_pred ---------------hcccCCCChHHHHHHHHHHHhcc----ccHHHHHhhcCCCCHHHHHHHHHHHHhH
Confidence 58899999999999999999995 7999999999999999999999875544
No 3
>PLN03091 hypothetical protein; Provisional
Probab=99.86 E-value=3e-21 Score=179.60 Aligned_cols=104 Identities=16% Similarity=0.234 Sum_probs=91.9
Q ss_pred cCCCCCCHHHHHHHHHHHHhCCCCCCcchhhHHHHcCCCCCHHHHHHHHHHhhhcccCCchhHHHHhhhhcccchhhhhc
Q 047185 55 EEEKEWNEEDIEILKKQMVKNPVGKPKRWEVIAEAFNGRHRVESVIKKAKELGEKKIDDSDSYNQFLKNRKAIDMRVVQE 134 (214)
Q Consensus 55 ~~~~~WT~EE~~lL~kav~kyP~Gt~~RWe~IA~~lg~~RT~~qc~~k~k~l~~~~~~~~~~~~~~l~~~~~l~~r~~~~ 134 (214)
..++.||.|||++|+++|.+|+ . ..|..||..++.+||.+||++||..++ +|
T Consensus 12 lrKg~WTpEEDe~L~~~V~kyG--~-~nWs~IAk~~g~gRT~KQCRERW~NyL--------------------dP----- 63 (459)
T PLN03091 12 LRKGLWSPEEDEKLLRHITKYG--H-GCWSSVPKQAGLQRCGKSCRLRWINYL--------------------RP----- 63 (459)
T ss_pred CcCCCCCHHHHHHHHHHHHHhC--c-CCHHHHhhhhccCcCcchHhHHHHhcc--------------------CC-----
Confidence 4678999999999999999994 4 589999999977899999999996553 34
Q ss_pred ccccccccccccccCCCCCCCCCHHHHHHHHHHHHhCCCCCCCcHHHHHhhCCCCCHHHHHHHHHHHHHHH
Q 047185 135 NCEDSKKESQENVVVGGGGGVWNAGEDIALLNALKAFPKDVPLRWEKIAAAVPGRSKAACMKRFSDLKRDF 205 (214)
Q Consensus 135 ~~~~~~s~~~~~~~~~~~~~~WT~eED~~L~~al~~~p~~~~~rW~kIA~~vPGRT~~qc~~Ry~~L~~~v 205 (214)
.+.+++||+|||.+|+.++..|+ .+|.+||.+|||||+.+|++||+.+.+..
T Consensus 64 ---------------~IkKgpWT~EED~lLLeL~k~~G----nKWskIAk~LPGRTDnqIKNRWnslLKKk 115 (459)
T PLN03091 64 ---------------DLKRGTFSQQEENLIIELHAVLG----NRWSQIAAQLPGRTDNEIKNLWNSCLKKK 115 (459)
T ss_pred ---------------cccCCCCCHHHHHHHHHHHHHhC----cchHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 58899999999999999999995 69999999999999999999999765543
No 4
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]
Probab=99.82 E-value=7.3e-20 Score=159.33 Aligned_cols=103 Identities=15% Similarity=0.184 Sum_probs=90.8
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCCCcchhhHHHHcCCCCCHHHHHHHHHHhhhcccCCchhHHHHhhhhcccchhhhhccc
Q 047185 57 EKEWNEEDIEILKKQMVKNPVGKPKRWEVIAEAFNGRHRVESVIKKAKELGEKKIDDSDSYNQFLKNRKAIDMRVVQENC 136 (214)
Q Consensus 57 ~~~WT~EE~~lL~kav~kyP~Gt~~RWe~IA~~lg~~RT~~qc~~k~k~l~~~~~~~~~~~~~~l~~~~~l~~r~~~~~~ 136 (214)
+++||.|||.+|+..|.+|+. .+|..||..+|-+|+.++|+.||..++ .|
T Consensus 9 kGpWt~EED~~L~~~V~~~G~---~~W~~i~k~~gl~R~GKSCRlRW~NyL--------------------rP------- 58 (238)
T KOG0048|consen 9 KGPWTQEEDLTQIRSIKSFGK---HNGTALPKLAGLRRCGKSCRLRWTNYL--------------------RP------- 58 (238)
T ss_pred CCCCChHHHHHHHHHHHHhCC---CCcchhhhhcCCCccchHHHHHhhccc--------------------CC-------
Confidence 699999999999999999954 489999999997799999999996543 23
Q ss_pred ccccccccccccCCCCCCCCCHHHHHHHHHHHHhCCCCCCCcHHHHHhhCCCCCHHHHHHHHHH-HHHHHh
Q 047185 137 EDSKKESQENVVVGGGGGVWNAGEDIALLNALKAFPKDVPLRWEKIAAAVPGRSKAACMKRFSD-LKRDFR 206 (214)
Q Consensus 137 ~~~~s~~~~~~~~~~~~~~WT~eED~~L~~al~~~p~~~~~rW~kIA~~vPGRT~~qc~~Ry~~-L~~~v~ 206 (214)
.++++.||+|||.+|..+...| |++|..||..|||||+++++++|+- |++.+.
T Consensus 59 -------------~ikrg~fT~eEe~~Ii~lH~~~----GNrWs~IA~~LPGRTDNeIKN~Wnt~lkkkl~ 112 (238)
T KOG0048|consen 59 -------------DLKRGNFSDEEEDLIIKLHALL----GNRWSLIAGRLPGRTDNEVKNHWNTHLKKKLL 112 (238)
T ss_pred -------------CccCCCCCHHHHHHHHHHHHHH----CcHHHHHHhhCCCcCHHHHHHHHHHHHHHHHH
Confidence 5899999999999999999999 5899999999999999999999975 444443
No 5
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=99.38 E-value=6.6e-13 Score=88.57 Aligned_cols=46 Identities=41% Similarity=0.818 Sum_probs=40.7
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCCCCcHHHHHhhCC-CCCHHHHHHHHHHH
Q 047185 153 GGVWNAGEDIALLNALKAFPKDVPLRWEKIAAAVP-GRSKAACMKRFSDL 201 (214)
Q Consensus 153 ~~~WT~eED~~L~~al~~~p~~~~~rW~kIA~~vP-GRT~~qc~~Ry~~L 201 (214)
+++||++||.+|++++.+||. .+|..||..|| |||..||+.||..|
T Consensus 1 r~~Wt~eE~~~l~~~v~~~g~---~~W~~Ia~~~~~~Rt~~qc~~~~~~~ 47 (48)
T PF00249_consen 1 RGPWTEEEDEKLLEAVKKYGK---DNWKKIAKRMPGGRTAKQCRSRYQNL 47 (48)
T ss_dssp S-SS-HHHHHHHHHHHHHSTT---THHHHHHHHHSSSSTHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCC---cHHHHHHHHcCCCCCHHHHHHHHHhh
Confidence 368999999999999999975 36999999999 99999999999876
No 6
>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=99.32 E-value=3.5e-12 Score=120.90 Aligned_cols=107 Identities=28% Similarity=0.506 Sum_probs=94.1
Q ss_pred ccCCCCCCHHHHHHHHHHHHhCCCCCCcchhhHHHHcCCCCCHHHHHHHHHHhhhcccCCchhHHHHhhhhcccchhhhh
Q 047185 54 SEEEKEWNEEDIEILKKQMVKNPVGKPKRWEVIAEAFNGRHRVESVIKKAKELGEKKIDDSDSYNQFLKNRKAIDMRVVQ 133 (214)
Q Consensus 54 ~~~~~~WT~EE~~lL~kav~kyP~Gt~~RWe~IA~~lg~~RT~~qc~~k~k~l~~~~~~~~~~~~~~l~~~~~l~~r~~~ 133 (214)
.++++.|+.-|++.|..+|.+| |+ +.|..||..++ .+|+.||..+|.+. +||
T Consensus 4 ~~kggvwrntEdeilkaav~ky--g~-nqws~i~sll~-~kt~rqC~~rw~e~--------------------ldp---- 55 (617)
T KOG0050|consen 4 EIKGGVWRNTEDEVLKAAVMKY--GK-NQWSRIASLLN-RKTARQCKARWEEW--------------------LDP---- 55 (617)
T ss_pred EEecceecccHHHHHHHHHHHc--ch-HHHHHHHHHHh-hcchhHHHHHHHHH--------------------hCH----
Confidence 4678999999999999999999 56 58999999998 79999999998654 334
Q ss_pred cccccccccccccccCCCCCCCCCHHHHHHHHHHHHhCCCCCCCcHHHHHhhCCCCCHHHHHHHHHHHHHHHhchh
Q 047185 134 ENCEDSKKESQENVVVGGGGGVWNAGEDIALLNALKAFPKDVPLRWEKIAAAVPGRSKAACMKRFSDLKRDFRSSK 209 (214)
Q Consensus 134 ~~~~~~~s~~~~~~~~~~~~~~WT~eED~~L~~al~~~p~~~~~rW~kIA~~vPGRT~~qc~~Ry~~L~~~v~~~k 209 (214)
.++...||.+||..|+.+...+| ..|..||..| |||..||.+||..|+...-+.-
T Consensus 56 ----------------~i~~tews~eederlLhlakl~p----~qwrtIa~i~-gr~~~qc~eRy~~ll~~~~s~~ 110 (617)
T KOG0050|consen 56 ----------------AIKKTEWSREEDERLLHLAKLEP----TQWRTIADIM-GRTSQQCLERYNNLLDVYVSYH 110 (617)
T ss_pred ----------------HHhhhhhhhhHHHHHHHHHHhcC----CccchHHHHh-hhhHHHHHHHHHHHHHHHHhhh
Confidence 58899999999999999999986 6999999877 9999999999999988765543
No 7
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A ....
Probab=99.32 E-value=6.2e-12 Score=86.93 Aligned_cols=41 Identities=22% Similarity=0.437 Sum_probs=35.4
Q ss_pred CCHHHHHHHHHHHHhCCCCCCcchhhHHHHcCCCCCHHHHHHHHHH
Q 047185 60 WNEEDIEILKKQMVKNPVGKPKRWEVIAEAFNGRHRVESVIKKAKE 105 (214)
Q Consensus 60 WT~EE~~lL~kav~kyP~Gt~~RWe~IA~~lg~~RT~~qc~~k~k~ 105 (214)
||+||+.+|..++..|+ .+|..||++|| .||..||..||..
T Consensus 1 WT~eEd~~L~~~~~~~g----~~W~~Ia~~l~-~Rt~~~~~~r~~~ 41 (60)
T PF13921_consen 1 WTKEEDELLLELVKKYG----NDWKKIAEHLG-NRTPKQCRNRWRN 41 (60)
T ss_dssp S-HHHHHHHHHHHHHHT----S-HHHHHHHST-TS-HHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHC----cCHHHHHHHHC-cCCHHHHHHHHHH
Confidence 99999999999999994 37999999997 8999999999976
No 8
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=99.25 E-value=1.6e-11 Score=81.87 Aligned_cols=47 Identities=23% Similarity=0.403 Sum_probs=40.9
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCCCcchhhHHHHcCCCCCHHHHHHHHHHh
Q 047185 57 EKEWNEEDIEILKKQMVKNPVGKPKRWEVIAEAFNGRHRVESVIKKAKEL 106 (214)
Q Consensus 57 ~~~WT~EE~~lL~kav~kyP~Gt~~RWe~IA~~lg~~RT~~qc~~k~k~l 106 (214)
.++||.||+.+|.+++.+||. ++|..||..||++||..||..+|..+
T Consensus 1 r~~Wt~eE~~~l~~~v~~~g~---~~W~~Ia~~~~~~Rt~~qc~~~~~~~ 47 (48)
T PF00249_consen 1 RGPWTEEEDEKLLEAVKKYGK---DNWKKIAKRMPGGRTAKQCRSRYQNL 47 (48)
T ss_dssp S-SS-HHHHHHHHHHHHHSTT---THHHHHHHHHSSSSTHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCC---cHHHHHHHHcCCCCCHHHHHHHHHhh
Confidence 368999999999999999964 37999999999789999999999765
No 9
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]
Probab=99.19 E-value=9.4e-11 Score=113.87 Aligned_cols=117 Identities=15% Similarity=0.262 Sum_probs=95.4
Q ss_pred cCCCCchhhhHhhhhhc---cCCCCCCHHHHHHHHHHHHhCCCCCCcchhhHHHHcCCCCCHHHHHHHHHHhhhcccCCc
Q 047185 38 IGNESKGEKVEVLQRKS---EEEKEWNEEDIEILKKQMVKNPVGKPKRWEVIAEAFNGRHRVESVIKKAKELGEKKIDDS 114 (214)
Q Consensus 38 ~~~~~~~~~~~~~~~~~---~~~~~WT~EE~~lL~kav~kyP~Gt~~RWe~IA~~lg~~RT~~qc~~k~k~l~~~~~~~~ 114 (214)
|+|.++.--|-.|.-+. ++.+.||.+||.+|..||.+|+ . ..|-+|-+.++ +|+..||+.+|-..+.
T Consensus 338 mpgr~~~qLI~R~~~~LdPsikhg~wt~~ED~~L~~AV~~Yg--~-kdw~k~R~~vP-nRSdsQcR~RY~nvL~------ 407 (939)
T KOG0049|consen 338 MPGRTRQQLITRFSHTLDPSVKHGRWTDQEDVLLVCAVSRYG--A-KDWAKVRQAVP-NRSDSQCRERYTNVLN------ 407 (939)
T ss_pred cCCcchhhhhhhheeccCccccCCCCCCHHHHHHHHHHHHhC--c-cchhhHHHhcC-CccHHHHHHHHHHHHH------
Confidence 45655555554444444 6899999999999999999995 3 58999999999 7999999999966532
Q ss_pred hhHHHHhhhhcccchhhhhcccccccccccccccCCCCCCCCCHHHHHHHHHHHHhCCCCCCCcHHHHHhhCCCCCHHH-
Q 047185 115 DSYNQFLKNRKAIDMRVVQENCEDSKKESQENVVVGGGGGVWNAGEDIALLNALKAFPKDVPLRWEKIAAAVPGRSKAA- 193 (214)
Q Consensus 115 ~~~~~~l~~~~~l~~r~~~~~~~~~~s~~~~~~~~~~~~~~WT~eED~~L~~al~~~p~~~~~rW~kIA~~vPGRT~~q- 193 (214)
.+.+.+.||-.||..|+.++.+|++ ..|.+||.++|.||..|
T Consensus 408 ----------------------------------~s~K~~rW~l~edeqL~~~V~~YG~---g~WakcA~~Lp~~t~~q~ 450 (939)
T KOG0049|consen 408 ----------------------------------RSAKVERWTLVEDEQLLYAVKVYGK---GNWAKCAMLLPKKTSRQL 450 (939)
T ss_pred ----------------------------------HhhccCceeecchHHHHHHHHHHcc---chHHHHHHHccccchhHH
Confidence 1367899999999999999999987 59999999999999955
Q ss_pred --HHHHHHHH
Q 047185 194 --CMKRFSDL 201 (214)
Q Consensus 194 --c~~Ry~~L 201 (214)
|+.|+-.+
T Consensus 451 ~rrR~R~~~~ 460 (939)
T KOG0049|consen 451 RRRRLRLIAA 460 (939)
T ss_pred HHHHHHHHHH
Confidence 66666443
No 10
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=99.16 E-value=8.2e-11 Score=75.88 Aligned_cols=46 Identities=39% Similarity=0.804 Sum_probs=42.6
Q ss_pred CCCCHHHHHHHHHHHHhCCCCCCCcHHHHHhhCCCCCHHHHHHHHHHHH
Q 047185 154 GVWNAGEDIALLNALKAFPKDVPLRWEKIAAAVPGRSKAACMKRFSDLK 202 (214)
Q Consensus 154 ~~WT~eED~~L~~al~~~p~~~~~rW~kIA~~vPGRT~~qc~~Ry~~L~ 202 (214)
.+||++||.+|+.++..|+. .+|..||..+|+||..+|+.||..+.
T Consensus 2 ~~Wt~~E~~~l~~~~~~~g~---~~w~~Ia~~~~~rt~~~~~~~~~~~~ 47 (49)
T smart00717 2 GEWTEEEDELLIELVKKYGK---NNWEKIAKELPGRTAEQCRERWNNLL 47 (49)
T ss_pred CCCCHHHHHHHHHHHHHHCc---CCHHHHHHHcCCCCHHHHHHHHHHHc
Confidence 68999999999999999963 69999999999999999999998764
No 11
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=99.05 E-value=5.3e-10 Score=71.10 Aligned_cols=44 Identities=43% Similarity=0.831 Sum_probs=40.9
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCCcHHHHHhhCCCCCHHHHHHHHHHH
Q 047185 155 VWNAGEDIALLNALKAFPKDVPLRWEKIAAAVPGRSKAACMKRFSDL 201 (214)
Q Consensus 155 ~WT~eED~~L~~al~~~p~~~~~rW~kIA~~vPGRT~~qc~~Ry~~L 201 (214)
+||.+||..|+.++..|+. .+|..||..||+||..+|+.||..+
T Consensus 1 ~Wt~eE~~~l~~~~~~~g~---~~w~~Ia~~~~~rs~~~~~~~~~~~ 44 (45)
T cd00167 1 PWTEEEDELLLEAVKKYGK---NNWEKIAKELPGRTPKQCRERWRNL 44 (45)
T ss_pred CCCHHHHHHHHHHHHHHCc---CCHHHHHhHcCCCCHHHHHHHHHHh
Confidence 5999999999999999963 6899999999999999999999875
No 12
>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]
Probab=99.04 E-value=4e-10 Score=107.91 Aligned_cols=109 Identities=19% Similarity=0.310 Sum_probs=94.3
Q ss_pred hhhccCCCCCCHHHHHHHHHHHHhCCCCCCcchhhHHHHcCCCCCHHHHHHHHHHhhhcccCCchhHHHHhhhhcccchh
Q 047185 51 QRKSEEEKEWNEEDIEILKKQMVKNPVGKPKRWEVIAEAFNGRHRVESVIKKAKELGEKKIDDSDSYNQFLKNRKAIDMR 130 (214)
Q Consensus 51 ~~~~~~~~~WT~EE~~lL~kav~kyP~Gt~~RWe~IA~~lg~~RT~~qc~~k~k~l~~~~~~~~~~~~~~l~~~~~l~~r 130 (214)
-++..+.+.|+..||..|..++++| |+ +.|.+||..|+ .++.+||..+|.+.. +|
T Consensus 14 ~~~~~k~gsw~~~EDe~l~~~vk~l--~~-nnws~vas~~~-~~~~kq~~~rw~~~l--------------------np- 68 (512)
T COG5147 14 MQTKRKGGSWKRTEDEDLKALVKKL--GP-NNWSKVASLLI-SSTGKQSSNRWNNHL--------------------NP- 68 (512)
T ss_pred ccceecCCCCCCcchhHHHHHHhhc--cc-ccHHHHHHHhc-ccccccccchhhhhh--------------------ch-
Confidence 4555678899999999999999999 45 57999999998 689999998884331 22
Q ss_pred hhhcccccccccccccccCCCCCCCCCHHHHHHHHHHHHhCCCCCCCcHHHHHhhCCCCCHHHHHHHHHHHHHHHhc
Q 047185 131 VVQENCEDSKKESQENVVVGGGGGVWNAGEDIALLNALKAFPKDVPLRWEKIAAAVPGRSKAACMKRFSDLKRDFRS 207 (214)
Q Consensus 131 ~~~~~~~~~~s~~~~~~~~~~~~~~WT~eED~~L~~al~~~p~~~~~rW~kIA~~vPGRT~~qc~~Ry~~L~~~v~~ 207 (214)
.+....||.+||..|..+...++ .+|..||..+||||..+|.+||..+.++..+
T Consensus 69 -------------------~lk~~~~~~eed~~li~l~~~~~----~~wstia~~~d~rt~~~~~ery~~~~~~~~s 122 (512)
T COG5147 69 -------------------QLKKKNWSEEEDEQLIDLDKELG----TQWSTIADYKDRRTAQQCVERYVNTLEDLSS 122 (512)
T ss_pred -------------------hcccccccHHHHHHHHHHHHhcC----chhhhhccccCccchHHHHHHHHHHhhhhhc
Confidence 57899999999999999999995 6899999999999999999999988777655
No 13
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A ....
Probab=98.94 E-value=1.2e-09 Score=75.38 Aligned_cols=43 Identities=33% Similarity=0.681 Sum_probs=37.0
Q ss_pred CCHHHHHHHHHHHHhCCCCCCCcHHHHHhhCCCCCHHHHHHHHHH-HH
Q 047185 156 WNAGEDIALLNALKAFPKDVPLRWEKIAAAVPGRSKAACMKRFSD-LK 202 (214)
Q Consensus 156 WT~eED~~L~~al~~~p~~~~~rW~kIA~~vPGRT~~qc~~Ry~~-L~ 202 (214)
||.+||.+|..++..|+ ..|..||..||.||..+|+.||.. |.
T Consensus 1 WT~eEd~~L~~~~~~~g----~~W~~Ia~~l~~Rt~~~~~~r~~~~l~ 44 (60)
T PF13921_consen 1 WTKEEDELLLELVKKYG----NDWKKIAEHLGNRTPKQCRNRWRNHLR 44 (60)
T ss_dssp S-HHHHHHHHHHHHHHT----S-HHHHHHHSTTS-HHHHHHHHHHTTS
T ss_pred CCHHHHHHHHHHHHHHC----cCHHHHHHHHCcCCHHHHHHHHHHHCc
Confidence 99999999999999995 589999999966999999999998 54
No 14
>PLN03212 Transcription repressor MYB5; Provisional
Probab=98.88 E-value=2.2e-09 Score=94.37 Aligned_cols=55 Identities=24% Similarity=0.431 Sum_probs=47.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHhCCCCCCCcHHHHHhhC-CCCCHHHHHHHHHH-HHHHHhc
Q 047185 150 GGGGGVWNAGEDIALLNALKAFPKDVPLRWEKIAAAV-PGRSKAACMKRFSD-LKRDFRS 207 (214)
Q Consensus 150 ~~~~~~WT~eED~~L~~al~~~p~~~~~rW~kIA~~v-PGRT~~qc~~Ry~~-L~~~v~~ 207 (214)
.+.+++||+|||.+|..++..|+. .+|..||..+ ||||.+||++||.. |...+.+
T Consensus 22 glKRg~WT~EEDe~L~~lV~kyG~---~nW~~IAk~~g~gRT~KQCReRW~N~L~P~I~k 78 (249)
T PLN03212 22 GMKRGPWTVEEDEILVSFIKKEGE---GRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKR 78 (249)
T ss_pred CCcCCCCCHHHHHHHHHHHHHhCc---ccHHHHHHhhhcCCCcchHHHHHHHhhchhccc
Confidence 578999999999999999999974 6899999988 69999999999964 5555443
No 15
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=98.86 E-value=7e-09 Score=66.71 Aligned_cols=47 Identities=30% Similarity=0.456 Sum_probs=42.0
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCCCcchhhHHHHcCCCCCHHHHHHHHHHhh
Q 047185 57 EKEWNEEDIEILKKQMVKNPVGKPKRWEVIAEAFNGRHRVESVIKKAKELG 107 (214)
Q Consensus 57 ~~~WT~EE~~lL~kav~kyP~Gt~~RWe~IA~~lg~~RT~~qc~~k~k~l~ 107 (214)
+++||.+|+.+|..++..|+ . .+|..||..|+ +||..||..+|..+.
T Consensus 1 ~~~Wt~~E~~~l~~~~~~~g--~-~~w~~Ia~~~~-~rt~~~~~~~~~~~~ 47 (49)
T smart00717 1 KGEWTEEEDELLIELVKKYG--K-NNWEKIAKELP-GRTAEQCRERWNNLL 47 (49)
T ss_pred CCCCCHHHHHHHHHHHHHHC--c-CCHHHHHHHcC-CCCHHHHHHHHHHHc
Confidence 36899999999999999995 3 58999999999 899999999998764
No 16
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]
Probab=98.77 E-value=3.1e-08 Score=96.30 Aligned_cols=104 Identities=20% Similarity=0.408 Sum_probs=86.9
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCCCcchhhHHHHcCCCCCHHHHHHHHHHhhhcccCCchhHHHHhhhhcccchhhhhcc
Q 047185 56 EEKEWNEEDIEILKKQMVKNPVGKPKRWEVIAEAFNGRHRVESVIKKAKELGEKKIDDSDSYNQFLKNRKAIDMRVVQEN 135 (214)
Q Consensus 56 ~~~~WT~EE~~lL~kav~kyP~Gt~~RWe~IA~~lg~~RT~~qc~~k~k~l~~~~~~~~~~~~~~l~~~~~l~~r~~~~~ 135 (214)
..+.||.||++.|.+++..++ ++|..|+..|| |.+..|+.+|+.+-...
T Consensus 383 ~rg~wt~ee~eeL~~l~~~~g----~~W~~Ig~~lg--r~P~~crd~wr~~~~~g------------------------- 431 (607)
T KOG0051|consen 383 KRGKWTPEEEEELKKLVVEHG----NDWKEIGKALG--RMPMDCRDRWRQYVKCG------------------------- 431 (607)
T ss_pred ccCCCCcchHHHHHHHHHHhc----ccHHHHHHHHc--cCcHHHHHHHHHhhccc-------------------------
Confidence 789999999999999999994 37999999998 99999999997663210
Q ss_pred cccccccccccccCCCCCCCCCHHHHHHHHHHHH-------hC------------CCC---CCCcHHHHHhhCCCCCHHH
Q 047185 136 CEDSKKESQENVVVGGGGGVWNAGEDIALLNALK-------AF------------PKD---VPLRWEKIAAAVPGRSKAA 193 (214)
Q Consensus 136 ~~~~~s~~~~~~~~~~~~~~WT~eED~~L~~al~-------~~------------p~~---~~~rW~kIA~~vPGRT~~q 193 (214)
.....+.||.+|...|..++. +| |.+ .+-.|.-|++.+.+|+-.|
T Consensus 432 -------------~~~~r~~Ws~eEe~~Llk~V~~~~~~~~q~q~~n~~~~~q~sp~s~~~d~I~Wt~vse~~~TR~~~q 498 (607)
T KOG0051|consen 432 -------------SKRNRGAWSIEEEEKLLKTVNEMIREALQPQASNTDTGLQESPESTLKDDINWTLVSEMLGTRSRIQ 498 (607)
T ss_pred -------------cccccCcchHHHHHHHHHHHHHHHHHhhcccccccchhhhcCccccccCCcchhhhhHhhcCCCcch
Confidence 125789999999999999984 33 222 4579999999999999999
Q ss_pred HHHHHHHHHH
Q 047185 194 CMKRFSDLKR 203 (214)
Q Consensus 194 c~~Ry~~L~~ 203 (214)
|+..|..|..
T Consensus 499 Cr~Kw~kl~~ 508 (607)
T KOG0051|consen 499 CRYKWYKLTT 508 (607)
T ss_pred HHHHHHHHHh
Confidence 9999988753
No 17
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=98.76 E-value=2.3e-08 Score=63.44 Aligned_cols=44 Identities=25% Similarity=0.444 Sum_probs=39.7
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCcchhhHHHHcCCCCCHHHHHHHHHHh
Q 047185 59 EWNEEDIEILKKQMVKNPVGKPKRWEVIAEAFNGRHRVESVIKKAKEL 106 (214)
Q Consensus 59 ~WT~EE~~lL~kav~kyP~Gt~~RWe~IA~~lg~~RT~~qc~~k~k~l 106 (214)
+||.+|+.+|..++..||. .+|..||..|+ +||..||..+|..+
T Consensus 1 ~Wt~eE~~~l~~~~~~~g~---~~w~~Ia~~~~-~rs~~~~~~~~~~~ 44 (45)
T cd00167 1 PWTEEEDELLLEAVKKYGK---NNWEKIAKELP-GRTPKQCRERWRNL 44 (45)
T ss_pred CCCHHHHHHHHHHHHHHCc---CCHHHHHhHcC-CCCHHHHHHHHHHh
Confidence 5999999999999999953 57999999998 69999999999764
No 18
>PLN03091 hypothetical protein; Provisional
Probab=98.56 E-value=7e-08 Score=90.85 Aligned_cols=54 Identities=22% Similarity=0.484 Sum_probs=46.1
Q ss_pred CCCCCCCCHHHHHHHHHHHHhCCCCCCCcHHHHHhhC-CCCCHHHHHHHHHH-HHHHHh
Q 047185 150 GGGGGVWNAGEDIALLNALKAFPKDVPLRWEKIAAAV-PGRSKAACMKRFSD-LKRDFR 206 (214)
Q Consensus 150 ~~~~~~WT~eED~~L~~al~~~p~~~~~rW~kIA~~v-PGRT~~qc~~Ry~~-L~~~v~ 206 (214)
.+.++.||+|||++|..+|.+|+. ..|..||..+ +|||.+||++||.. |...|.
T Consensus 11 klrKg~WTpEEDe~L~~~V~kyG~---~nWs~IAk~~g~gRT~KQCRERW~NyLdP~Ik 66 (459)
T PLN03091 11 KLRKGLWSPEEDEKLLRHITKYGH---GCWSSVPKQAGLQRCGKSCRLRWINYLRPDLK 66 (459)
T ss_pred CCcCCCCCHHHHHHHHHHHHHhCc---CCHHHHhhhhccCcCcchHhHHHHhccCCccc
Confidence 478899999999999999999975 6899999877 59999999999975 544443
No 19
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]
Probab=98.55 E-value=3.7e-08 Score=85.97 Aligned_cols=54 Identities=22% Similarity=0.413 Sum_probs=48.0
Q ss_pred CCCCCCCHHHHHHHHHHHHhCCCCCCCcHHHHHhhCC-CCCHHHHHHHHH-HHHHHHhc
Q 047185 151 GGGGVWNAGEDIALLNALKAFPKDVPLRWEKIAAAVP-GRSKAACMKRFS-DLKRDFRS 207 (214)
Q Consensus 151 ~~~~~WT~eED~~L~~al~~~p~~~~~rW~kIA~~vP-GRT~~qc~~Ry~-~L~~~v~~ 207 (214)
..+++||+|||..|...+..|+. .+|..||..++ ||+.++|+.||. +|..+|++
T Consensus 7 ~~kGpWt~EED~~L~~~V~~~G~---~~W~~i~k~~gl~R~GKSCRlRW~NyLrP~ikr 62 (238)
T KOG0048|consen 7 LVKGPWTQEEDLTQIRSIKSFGK---HNGTALPKLAGLRRCGKSCRLRWTNYLRPDLKR 62 (238)
T ss_pred ccCCCCChHHHHHHHHHHHHhCC---CCcchhhhhcCCCccchHHHHHhhcccCCCccC
Confidence 34699999999999999999975 69999999999 999999999995 67777663
No 20
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]
Probab=97.92 E-value=6e-05 Score=73.75 Aligned_cols=111 Identities=20% Similarity=0.305 Sum_probs=79.0
Q ss_pred CCCCCCHHHHHHHHHHHH-------hC------------CCC---CCcchhhHHHHcCCCCCHHHHHHHHHHhhhcccCC
Q 047185 56 EEKEWNEEDIEILKKQMV-------KN------------PVG---KPKRWEVIAEAFNGRHRVESVIKKAKELGEKKIDD 113 (214)
Q Consensus 56 ~~~~WT~EE~~lL~kav~-------ky------------P~G---t~~RWe~IA~~lg~~RT~~qc~~k~k~l~~~~~~~ 113 (214)
+.+.||-||-+.|.++|. .| |.+ ....|-.|++.+| +|+..||..+|.++....+
T Consensus 435 ~r~~Ws~eEe~~Llk~V~~~~~~~~q~q~~n~~~~~q~sp~s~~~d~I~Wt~vse~~~-TR~~~qCr~Kw~kl~~~~s-- 511 (607)
T KOG0051|consen 435 NRGAWSIEEEEKLLKTVNEMIREALQPQASNTDTGLQESPESTLKDDINWTLVSEMLG-TRSRIQCRYKWYKLTTSPS-- 511 (607)
T ss_pred ccCcchHHHHHHHHHHHHHHHHHhhcccccccchhhhcCccccccCCcchhhhhHhhc-CCCcchHHHHHHHHHhhHH--
Confidence 678999999999999995 22 233 3468999999777 8999999999987743211
Q ss_pred chhHHHHhhhhcccchhhhhcccccccccccccccCCCCCCCCCH-HHHHHHHHHHHhCCC--CCCCcHHHHHhhCCCCC
Q 047185 114 SDSYNQFLKNRKAIDMRVVQENCEDSKKESQENVVVGGGGGVWNA-GEDIALLNALKAFPK--DVPLRWEKIAAAVPGRS 190 (214)
Q Consensus 114 ~~~~~~~l~~~~~l~~r~~~~~~~~~~s~~~~~~~~~~~~~~WT~-eED~~L~~al~~~p~--~~~~rW~kIA~~vPGRT 190 (214)
.....|.. ...-.|++-|..++. ..+..|.-|+...||.+
T Consensus 512 -------------------------------------~n~~~~~~~~~~v~l~ErL~dl~~~e~~~IDW~~l~~~~~g~~ 554 (607)
T KOG0051|consen 512 -------------------------------------FNKRQESKGSDMVWLLERLSDLDLTEESPIDWKSLAEYAPGES 554 (607)
T ss_pred -------------------------------------hhcccccccchhHHHHHHHHhcccccCCccCHHHHHHhCCCCC
Confidence 12222222 122233444444433 34689999999999999
Q ss_pred -HHHHHHHHHHHHHHHh
Q 047185 191 -KAACMKRFSDLKRDFR 206 (214)
Q Consensus 191 -~~qc~~Ry~~L~~~v~ 206 (214)
..+|+.+|..|+..|.
T Consensus 555 ~~~e~r~q~~~lk~~I~ 571 (607)
T KOG0051|consen 555 TGEELRLQFERLKKKIP 571 (607)
T ss_pred cHHHHHHHHHhHhhccC
Confidence 9999999999887654
No 21
>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]
Probab=97.90 E-value=1.4e-05 Score=75.85 Aligned_cols=46 Identities=17% Similarity=0.402 Sum_probs=41.8
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCCCcchhhHHHHcCCCCCHHHHHHHHHHh
Q 047185 56 EEKEWNEEDIEILKKQMVKNPVGKPKRWEVIAEAFNGRHRVESVIKKAKEL 106 (214)
Q Consensus 56 ~~~~WT~EE~~lL~kav~kyP~Gt~~RWe~IA~~lg~~RT~~qc~~k~k~l 106 (214)
....||.+|+.+|.++|++|+ +.|++||..+| +||++|||.++-.|
T Consensus 278 ~dk~WS~qE~~LLLEGIe~yg----DdW~kVA~HVg-tKt~EqCIl~FL~L 323 (531)
T COG5259 278 RDKNWSRQELLLLLEGIEMYG----DDWDKVARHVG-TKTKEQCILHFLQL 323 (531)
T ss_pred ccccccHHHHHHHHHHHHHhh----hhHHHHHHHhC-CCCHHHHHHHHHcC
Confidence 566999999999999999995 58999999999 89999999998654
No 22
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=97.81 E-value=8.2e-05 Score=51.90 Aligned_cols=47 Identities=15% Similarity=0.187 Sum_probs=41.0
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCCCcch---hhHHHHcCCCC-CHHHHHHHHHHh
Q 047185 57 EKEWNEEDIEILKKQMVKNPVGKPKRW---EVIAEAFNGRH-RVESVIKKAKEL 106 (214)
Q Consensus 57 ~~~WT~EE~~lL~kav~kyP~Gt~~RW---e~IA~~lg~~R-T~~qc~~k~k~l 106 (214)
.-.||+||..++..|+..|+. +.| ..|++.|+.++ |..||..+++.+
T Consensus 3 r~~WT~eeh~~Fl~ai~~~G~---g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy 53 (57)
T TIGR01557 3 RVVWTEDLHDRFLQAVQKLGG---PDWATPKRILELMVVDGLTRDQVASHLQKY 53 (57)
T ss_pred CCCCCHHHHHHHHHHHHHhCC---CcccchHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 457999999999999999953 369 99999998777 999999998765
No 23
>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]
Probab=97.62 E-value=5.8e-05 Score=71.80 Aligned_cols=46 Identities=26% Similarity=0.557 Sum_probs=42.8
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCCCCcHHHHHhhCCCCCHHHHHHHHHHH
Q 047185 152 GGGVWNAGEDIALLNALKAFPKDVPLRWEKIAAAVPGRSKAACMKRFSDL 201 (214)
Q Consensus 152 ~~~~WT~eED~~L~~al~~~p~~~~~rW~kIA~~vPGRT~~qc~~Ry~~L 201 (214)
....||.+|--+|+.++..| ++.|.+||..|..||++||..||-.|
T Consensus 278 ~dk~WS~qE~~LLLEGIe~y----gDdW~kVA~HVgtKt~EqCIl~FL~L 323 (531)
T COG5259 278 RDKNWSRQELLLLLEGIEMY----GDDWDKVARHVGTKTKEQCILHFLQL 323 (531)
T ss_pred ccccccHHHHHHHHHHHHHh----hhhHHHHHHHhCCCCHHHHHHHHHcC
Confidence 56799999999999999999 48999999999999999999999765
No 24
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=97.52 E-value=0.00016 Score=68.13 Aligned_cols=48 Identities=25% Similarity=0.461 Sum_probs=44.1
Q ss_pred CCCCCCCCHHHHHHHHHHHHhCCCCCCCcHHHHHhhCCCCCHHHHHHHHHH
Q 047185 150 GGGGGVWNAGEDIALLNALKAFPKDVPLRWEKIAAAVPGRSKAACMKRFSD 200 (214)
Q Consensus 150 ~~~~~~WT~eED~~L~~al~~~p~~~~~rW~kIA~~vPGRT~~qc~~Ry~~ 200 (214)
.+....||.+|+.+|+.|+..|+- .+|.-||..|..||+.+|++||..
T Consensus 69 ~i~~~~WtadEEilLLea~~t~G~---GNW~dIA~hIGtKtkeeck~hy~k 116 (438)
T KOG0457|consen 69 PILDPSWTADEEILLLEAAETYGF---GNWQDIADHIGTKTKEECKEHYLK 116 (438)
T ss_pred CCCCCCCChHHHHHHHHHHHHhCC---CcHHHHHHHHcccchHHHHHHHHH
Confidence 467789999999999999999976 599999999999999999999954
No 25
>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]
Probab=97.49 E-value=0.00013 Score=70.49 Aligned_cols=46 Identities=20% Similarity=0.371 Sum_probs=42.0
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCCCcchhhHHHHcCCCCCHHHHHHHHHHh
Q 047185 56 EEKEWNEEDIEILKKQMVKNPVGKPKRWEVIAEAFNGRHRVESVIKKAKEL 106 (214)
Q Consensus 56 ~~~~WT~EE~~lL~kav~kyP~Gt~~RWe~IA~~lg~~RT~~qc~~k~k~l 106 (214)
....||++|+-+|..+|.+|. +.|.+||..+| +||.+|||.|+-.+
T Consensus 252 ~~~~WT~qE~lLLLE~ie~y~----ddW~kVa~hVg-~ks~eqCI~kFL~L 297 (506)
T KOG1279|consen 252 ARPNWTEQETLLLLEAIEMYG----DDWNKVADHVG-TKSQEQCILKFLRL 297 (506)
T ss_pred CCCCccHHHHHHHHHHHHHhc----ccHHHHHhccC-CCCHHHHHHHHHhc
Confidence 467899999999999999994 58999999999 89999999999764
No 26
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=97.34 E-value=0.00083 Score=46.83 Aligned_cols=46 Identities=13% Similarity=0.297 Sum_probs=38.5
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCCCCcH---HHHHhhCC-CC-CHHHHHHHHHHH
Q 047185 153 GGVWNAGEDIALLNALKAFPKDVPLRW---EKIAAAVP-GR-SKAACMKRFSDL 201 (214)
Q Consensus 153 ~~~WT~eED~~L~~al~~~p~~~~~rW---~kIA~~vP-GR-T~~qc~~Ry~~L 201 (214)
.-.||+||...|+.||..|+. ..| .+|+..+. .+ |..||+.|+...
T Consensus 3 r~~WT~eeh~~Fl~ai~~~G~---g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy 53 (57)
T TIGR01557 3 RVVWTEDLHDRFLQAVQKLGG---PDWATPKRILELMVVDGLTRDQVASHLQKY 53 (57)
T ss_pred CCCCCHHHHHHHHHHHHHhCC---CcccchHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 458999999999999999974 479 99998654 34 999999999653
No 27
>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]
Probab=97.29 E-value=0.00036 Score=67.43 Aligned_cols=48 Identities=27% Similarity=0.562 Sum_probs=44.1
Q ss_pred CCCCCCCCHHHHHHHHHHHHhCCCCCCCcHHHHHhhCCCCCHHHHHHHHHHH
Q 047185 150 GGGGGVWNAGEDIALLNALKAFPKDVPLRWEKIAAAVPGRSKAACMKRFSDL 201 (214)
Q Consensus 150 ~~~~~~WT~eED~~L~~al~~~p~~~~~rW~kIA~~vPGRT~~qc~~Ry~~L 201 (214)
......||..|.-+|+.++..|+ +.|.+||..|.+||..||..||..|
T Consensus 250 ~~~~~~WT~qE~lLLLE~ie~y~----ddW~kVa~hVg~ks~eqCI~kFL~L 297 (506)
T KOG1279|consen 250 ESARPNWTEQETLLLLEAIEMYG----DDWNKVADHVGTKSQEQCILKFLRL 297 (506)
T ss_pred ccCCCCccHHHHHHHHHHHHHhc----ccHHHHHhccCCCCHHHHHHHHHhc
Confidence 45678999999999999999994 7999999999999999999999765
No 28
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=97.27 E-value=0.00045 Score=65.21 Aligned_cols=50 Identities=12% Similarity=0.159 Sum_probs=43.8
Q ss_pred cCCCCCCHHHHHHHHHHHHhCCCCCCcchhhHHHHcCCCCCHHHHHHHHHHhhh
Q 047185 55 EEEKEWNEEDIEILKKQMVKNPVGKPKRWEVIAEAFNGRHRVESVIKKAKELGE 108 (214)
Q Consensus 55 ~~~~~WT~EE~~lL~kav~kyP~Gt~~RWe~IA~~lg~~RT~~qc~~k~k~l~~ 108 (214)
+-...||.+|--+|.+|+..|+- ++|+-||++|| +||.++|.++|....-
T Consensus 70 i~~~~WtadEEilLLea~~t~G~---GNW~dIA~hIG-tKtkeeck~hy~k~fv 119 (438)
T KOG0457|consen 70 ILDPSWTADEEILLLEAAETYGF---GNWQDIADHIG-TKTKEECKEHYLKHFV 119 (438)
T ss_pred CCCCCCChHHHHHHHHHHHHhCC---CcHHHHHHHHc-ccchHHHHHHHHHHHh
Confidence 45678999999999999999954 58999999999 8999999999976533
No 29
>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A.
Probab=97.15 E-value=0.00044 Score=50.54 Aligned_cols=58 Identities=22% Similarity=0.502 Sum_probs=42.1
Q ss_pred CCCCHHHHHHHHHHHHh------CC--CCCC--CcHHHHHhhCC----CCCHHHHHHHHHHHHHHHhchhcc
Q 047185 154 GVWNAGEDIALLNALKA------FP--KDVP--LRWEKIAAAVP----GRSKAACMKRFSDLKRDFRSSKAG 211 (214)
Q Consensus 154 ~~WT~eED~~L~~al~~------~p--~~~~--~rW~kIA~~vP----GRT~~qc~~Ry~~L~~~v~~~k~~ 211 (214)
..||.+|-.+|+.++.. |. .... .-|..||..|- .||..||+.+|+.|...++..+..
T Consensus 2 ~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L~~~Yk~~k~~ 73 (90)
T PF13837_consen 2 RNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKNLKKKYKKIKDR 73 (90)
T ss_dssp -SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHHHHHHHHCSSSS
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHhc
Confidence 47999999999999887 21 1222 37999998763 799999999999999999887654
No 30
>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=97.05 E-value=0.00046 Score=66.54 Aligned_cols=53 Identities=26% Similarity=0.557 Sum_probs=46.8
Q ss_pred CCCCCCCHHHHHHHHHHHHhCCCCCCCcHHHHHhhCCCCCHHHHHHHHHHH-HHHHh
Q 047185 151 GGGGVWNAGEDIALLNALKAFPKDVPLRWEKIAAAVPGRSKAACMKRFSDL-KRDFR 206 (214)
Q Consensus 151 ~~~~~WT~eED~~L~~al~~~p~~~~~rW~kIA~~vPGRT~~qc~~Ry~~L-~~~v~ 206 (214)
++.+.|+.-||..|-.++..|++ +.|.+|++.++-+|+.||+.||.+. -..++
T Consensus 5 ~kggvwrntEdeilkaav~kyg~---nqws~i~sll~~kt~rqC~~rw~e~ldp~i~ 58 (617)
T KOG0050|consen 5 IKGGVWRNTEDEVLKAAVMKYGK---NQWSRIASLLNRKTARQCKARWEEWLDPAIK 58 (617)
T ss_pred EecceecccHHHHHHHHHHHcch---HHHHHHHHHHhhcchhHHHHHHHHHhCHHHh
Confidence 56889999999999999999986 8999999999999999999999764 34343
No 31
>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A.
Probab=97.04 E-value=0.0011 Score=48.39 Aligned_cols=51 Identities=24% Similarity=0.357 Sum_probs=34.8
Q ss_pred CCCCHHHHHHHHHHHHh------CC--CCCCc--chhhHHHHc---CCCCCHHHHHHHHHHhhh
Q 047185 58 KEWNEEDIEILKKQMVK------NP--VGKPK--RWEVIAEAF---NGRHRVESVIKKAKELGE 108 (214)
Q Consensus 58 ~~WT~EE~~lL~kav~k------yP--~Gt~~--RWe~IA~~l---g~~RT~~qc~~k~k~l~~ 108 (214)
..||.+|..+|+.+... |. +.... -|+.||+.| |-.||+.||..||+.|..
T Consensus 2 ~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L~~ 65 (90)
T PF13837_consen 2 RNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKNLKK 65 (90)
T ss_dssp -SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 47999999999998866 21 12222 599999998 457999999999999854
No 32
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=97.00 E-value=0.015 Score=60.77 Aligned_cols=146 Identities=19% Similarity=0.287 Sum_probs=95.3
Q ss_pred cCCCCCCHHHHHHHHHHHHhCCCCCCcchhhHHHHcCCCCCHHHHHHHHHHhhhcccCCchhHHHHhhhhcccchhhhhc
Q 047185 55 EEEKEWNEEDIEILKKQMVKNPVGKPKRWEVIAEAFNGRHRVESVIKKAKELGEKKIDDSDSYNQFLKNRKAIDMRVVQE 134 (214)
Q Consensus 55 ~~~~~WT~EE~~lL~kav~kyP~Gt~~RWe~IA~~lg~~RT~~qc~~k~k~l~~~~~~~~~~~~~~l~~~~~l~~r~~~~ 134 (214)
..=..||.-|-..+++++.+| | ...-+.||.+|+ ++|.++|...++-+-.. ......|++++.+-.....+....
T Consensus 822 ~gf~~w~~~~f~~f~~~~~~~--g-r~~~~~i~~~~~-~k~~~ev~~y~~~f~~~-~~~~~~~~~~~~~ie~~e~~~~~~ 896 (1033)
T PLN03142 822 EGFSTWSRRDFNAFIRACEKY--G-RNDIKSIASEME-GKTEEEVERYAKVFWER-YKELNDYDRIIKNIERGEARISRK 896 (1033)
T ss_pred cCcCcccHHHHHHHHHHHHHh--C-HhHHHHHHHHhc-CCCHHHHHHHHHHHHHh-hhhhccHHHHHHHHHHHHHHHHHH
Confidence 445579999999999999999 4 368999999998 69999999776654322 112345666655421111100000
Q ss_pred ----cc---ccccc-ccccc--c-cCCCCCCCCCHHHHHHHHHHHHhCCCCCCCcHHHHHhh------------CCCCCH
Q 047185 135 ----NC---EDSKK-ESQEN--V-VVGGGGGVWNAGEDIALLNALKAFPKDVPLRWEKIAAA------------VPGRSK 191 (214)
Q Consensus 135 ----~~---~~~~s-~~~~~--~-~~~~~~~~WT~eED~~L~~al~~~p~~~~~rW~kIA~~------------vPGRT~ 191 (214)
.+ ..... .-+.. . -...+...+|.+||..|+..+..|+- .+|++|-.. +-.||+
T Consensus 897 ~~~~~~~~~k~~~~~~p~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~g~---~~~~~~~~~i~~~~~f~fd~~~~srt~ 973 (1033)
T PLN03142 897 DEIMKAIGKKLDRYKNPWLELKIQYGQNKGKLYNEECDRFMLCMVHKLGY---GNWDELKAAFRTSPLFRFDWFVKSRTP 973 (1033)
T ss_pred HHHHHHHHHHHHHccCcHHHceeecCCCCCCcCCHHHHHHHHHHHHHhcc---chHHHHHHHHHhCCceeeehhhccCCH
Confidence 00 00000 00000 0 02345678999999999999999986 459998443 348999
Q ss_pred HHHHHHHHHHHHHHhch
Q 047185 192 AACMKRFSDLKRDFRSS 208 (214)
Q Consensus 192 ~qc~~Ry~~L~~~v~~~ 208 (214)
.++..|...|...|.+-
T Consensus 974 ~~~~~r~~~l~~~~~~e 990 (1033)
T PLN03142 974 QELARRCDTLIRLIEKE 990 (1033)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999998887543
No 33
>PF13325 MCRS_N: N-terminal region of micro-spherule protein
Probab=96.38 E-value=0.044 Score=47.28 Aligned_cols=119 Identities=9% Similarity=0.120 Sum_probs=79.3
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCcchhhHHHHcC--CCCCHHHHHHHHHHhhhcccCCchhHHHHhhhhcccchhhhhccc
Q 047185 59 EWNEEDIEILKKQMVKNPVGKPKRWEVIAEAFN--GRHRVESVIKKAKELGEKKIDDSDSYNQFLKNRKAIDMRVVQENC 136 (214)
Q Consensus 59 ~WT~EE~~lL~kav~kyP~Gt~~RWe~IA~~lg--~~RT~~qc~~k~k~l~~~~~~~~~~~~~~l~~~~~l~~r~~~~~~ 136 (214)
-|+.+||-+|+.+|..- +.=+.|+..+. ...|..++.+||..|+-...+...+...+- .+.|....
T Consensus 1 rW~~~DDl~Li~av~~~-----~~L~~v~~gvkFS~~fT~~Ei~~RW~~llyd~~is~~a~~~m~----~l~p~~~~--- 68 (199)
T PF13325_consen 1 RWKPEDDLLLINAVEQT-----NDLESVHLGVKFSCKFTLQEIEERWYALLYDPVISRIAVAAMR----NLHPELIA--- 68 (199)
T ss_pred CCCchhhHHHHHHHHHh-----cCHHHHHccCCcCCcCcHHHHHHHHHHHHcChhhHHHHHHHHH----hCCcchhh---
Confidence 39999999999999864 45777777553 367999999999988643322111111110 12221100
Q ss_pred ccccccccccccCCCCCCCCCHHHHHHHHHHHHhCCCCCCCcHHHHH-----hhCCCCCHHHHHHHHHHHH
Q 047185 137 EDSKKESQENVVVGGGGGVWNAGEDIALLNALKAFPKDVPLRWEKIA-----AAVPGRSKAACMKRFSDLK 202 (214)
Q Consensus 137 ~~~~s~~~~~~~~~~~~~~WT~eED~~L~~al~~~p~~~~~rW~kIA-----~~vPGRT~~qc~~Ry~~L~ 202 (214)
..-.+.+||.+|+.+|......... +...+++|= .+-++||+.+-..||..|+
T Consensus 69 ------------~iq~kalfS~~EE~lL~~v~s~~~p-~le~Fq~LL~~n~~vFh~sRTak~L~~HW~lmk 126 (199)
T PF13325_consen 69 ------------AIQSKALFSKEEEQLLGTVASSSQP-SLETFQELLDKNRSVFHPSRTAKSLQDHWRLMK 126 (199)
T ss_pred ------------cccccCCCCHHHHHHHHhhhhccCC-cHHHHHHHHHhChhhhccccCHHHHHHHHHHHH
Confidence 1346789999999999997654422 235676664 3678999999999998664
No 34
>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain
Probab=96.37 E-value=0.0056 Score=44.01 Aligned_cols=52 Identities=37% Similarity=0.508 Sum_probs=42.3
Q ss_pred CCCCCHHHHHHHHHHHHhCCC---C----------CCcchhhHHHHcC----CCCCHHHHHHHHHHhhh
Q 047185 57 EKEWNEEDIEILKKQMVKNPV---G----------KPKRWEVIAEAFN----GRHRVESVIKKAKELGE 108 (214)
Q Consensus 57 ~~~WT~EE~~lL~kav~kyP~---G----------t~~RWe~IA~~lg----~~RT~~qc~~k~k~l~~ 108 (214)
+..||.+|..+|+..|.+||. | ...-|+.|+..|+ +.||+.||..+|..+..
T Consensus 2 ~~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk~ 70 (78)
T PF13873_consen 2 KPNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLKS 70 (78)
T ss_pred CCCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHH
Confidence 467999999999999999864 2 1134999999883 37999999999988753
No 35
>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]
Probab=96.34 E-value=0.001 Score=64.43 Aligned_cols=105 Identities=16% Similarity=0.290 Sum_probs=83.3
Q ss_pred cCCCCCCHHHHHHHHHHHHhCCCCCCcchhhHHHHcCCCCCHHHHHHHHHHhhhcccCCchhHHHHhhhhcccchhhhhc
Q 047185 55 EEEKEWNEEDIEILKKQMVKNPVGKPKRWEVIAEAFNGRHRVESVIKKAKELGEKKIDDSDSYNQFLKNRKAIDMRVVQE 134 (214)
Q Consensus 55 ~~~~~WT~EE~~lL~kav~kyP~Gt~~RWe~IA~~lg~~RT~~qc~~k~k~l~~~~~~~~~~~~~~l~~~~~l~~r~~~~ 134 (214)
...+.||.+|...|.+.+..+|+ .|..|...++ |=...|+.+|..+...+
T Consensus 289 ~~~~~wt~e~~~eL~~~~~~~~~----~w~~ig~~~~--rmp~~crd~wr~~~~~g------------------------ 338 (512)
T COG5147 289 EQRGKWTKEEEQELAKLVVEHGG----SWTEIGKLLG--RMPNDCRDRWRDYVKCG------------------------ 338 (512)
T ss_pred hhhccCccccccccccccccccc----hhhHhhhhhc--cCcHHHHHHHhhhcccc------------------------
Confidence 56789999999999999999963 7999999997 88999999986652210
Q ss_pred ccccccccccccccCCCCCCCCCHHHHHHHHHHHHhC-C---CCCCCcHHHHHhhCCCCCHHHHHHHHHHHHH
Q 047185 135 NCEDSKKESQENVVVGGGGGVWNAGEDIALLNALKAF-P---KDVPLRWEKIAAAVPGRSKAACMKRFSDLKR 203 (214)
Q Consensus 135 ~~~~~~s~~~~~~~~~~~~~~WT~eED~~L~~al~~~-p---~~~~~rW~kIA~~vPGRT~~qc~~Ry~~L~~ 203 (214)
..+...+||.+|..+|..-+... - ......|..|+..++.+..-.|...|..|..
T Consensus 339 --------------~t~~~~~ws~eee~~l~~vv~e~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~ 397 (512)
T COG5147 339 --------------DTLKRNRWSIEEEELLDKVVNEMRLEAQQSSRILWLLIAQNIRNRLQHHCRDKYGVLIS 397 (512)
T ss_pred --------------CccCCCCCchhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHhhhccccCCCCCccccccc
Confidence 13678899999999887765521 1 1235899999999999999999888866654
No 36
>KOG4167 consensus Predicted DNA-binding protein, contains SANT and ELM2 domains [Transcription]
Probab=95.77 E-value=0.018 Score=57.84 Aligned_cols=48 Identities=21% Similarity=0.384 Sum_probs=42.3
Q ss_pred CCCCCCCHHHHHHHHHHHHhCCCCCCCcHHHHHhhCCCCCHHHHHHHHHHHH
Q 047185 151 GGGGVWNAGEDIALLNALKAFPKDVPLRWEKIAAAVPGRSKAACMKRFSDLK 202 (214)
Q Consensus 151 ~~~~~WT~eED~~L~~al~~~p~~~~~rW~kIA~~vPGRT~~qc~~Ry~~L~ 202 (214)
....-||+.|-++|..|+..|.+ ....|+..|+|||..||.+.|---+
T Consensus 617 ~gSd~WTp~E~~lF~kA~y~~~K----DF~~v~km~~~KtVaqCVeyYYtWK 664 (907)
T KOG4167|consen 617 AGSDKWTPLERKLFNKALYTYSK----DFIFVQKMVKSKTVAQCVEYYYTWK 664 (907)
T ss_pred cCcccccHHHHHHHHHHHHHhcc----cHHHHHHHhccccHHHHHHHHHHHH
Confidence 45678999999999999999964 8999999999999999999984433
No 37
>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=95.09 E-value=0.035 Score=51.24 Aligned_cols=49 Identities=24% Similarity=0.448 Sum_probs=43.7
Q ss_pred CCCCCCCCHHHHHHHHHHHHhCCCCCCCcHHHHHhhCCCCCHHHHHHHHHHH
Q 047185 150 GGGGGVWNAGEDIALLNALKAFPKDVPLRWEKIAAAVPGRSKAACMKRFSDL 201 (214)
Q Consensus 150 ~~~~~~WT~eED~~L~~al~~~p~~~~~rW~kIA~~vPGRT~~qc~~Ry~~L 201 (214)
.+....|+..|+-+|..++...+- ..|+-||..|..|++.+|++||-.+
T Consensus 60 pI~~e~WgadEEllli~~~~TlGl---GNW~dIadyiGsr~kee~k~HylK~ 108 (432)
T COG5114 60 PIGEEGWGADEELLLIECLDTLGL---GNWEDIADYIGSRAKEEIKSHYLKM 108 (432)
T ss_pred cccCCCcCchHHHHHHHHHHhcCC---CcHHHHHHHHhhhhhHHHHHHHHHH
Confidence 356789999999999999999875 5999999999999999999999543
No 38
>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices. It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.
Probab=95.07 E-value=0.062 Score=42.68 Aligned_cols=58 Identities=24% Similarity=0.312 Sum_probs=47.9
Q ss_pred CCCCCCCCHHHHHHHHHHHHhCCCCCCCcHHHHHhh------------CCCCCHHHHHHHHHHHHHHHhc
Q 047185 150 GGGGGVWNAGEDIALLNALKAFPKDVPLRWEKIAAA------------VPGRSKAACMKRFSDLKRDFRS 207 (214)
Q Consensus 150 ~~~~~~WT~eED~~L~~al~~~p~~~~~rW~kIA~~------------vPGRT~~qc~~Ry~~L~~~v~~ 207 (214)
...+..+|.+||..|+..+..||-+.++.|++|-.. +-.||+.++..|...|...|.+
T Consensus 46 ~~~~k~yseeEDRfLl~~~~~~G~~~~~~~e~Ik~~Ir~~p~FrFDwf~kSRt~~el~rR~~tLi~~i~K 115 (118)
T PF09111_consen 46 NNKKKVYSEEEDRFLLCMLYKYGYDAEGNWEKIKQEIRESPLFRFDWFFKSRTPQELQRRCNTLIKLIEK 115 (118)
T ss_dssp TSS-SSS-HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHH-CGGCT-HHHHTS-HHHHHHHHHHHHHHHHC
T ss_pred CCCCCCcCcHHHHHHHHHHHHhCCCCCchHHHHHHHHHhCCCcccchhcccCCHHHHHHHHHHHHHHHHH
Confidence 456889999999999999999999888999998764 3589999999999999887754
No 39
>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain
Probab=94.99 E-value=0.055 Score=38.77 Aligned_cols=56 Identities=20% Similarity=0.290 Sum_probs=45.3
Q ss_pred CCCCCHHHHHHHHHHHHhCCC---C----------CCCcHHHHHhhC-----CCCCHHHHHHHHHHHHHHHhch
Q 047185 153 GGVWNAGEDIALLNALKAFPK---D----------VPLRWEKIAAAV-----PGRSKAACMKRFSDLKRDFRSS 208 (214)
Q Consensus 153 ~~~WT~eED~~L~~al~~~p~---~----------~~~rW~kIA~~v-----PGRT~~qc~~Ry~~L~~~v~~~ 208 (214)
...||.+|...|...+..|+. + -..-|..|+..| +.||..||+..|..|+..++..
T Consensus 2 ~~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk~~~Kk~ 75 (78)
T PF13873_consen 2 KPNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLKSKAKKK 75 (78)
T ss_pred CCCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 457999999999999999854 1 125799999655 3799999999999999887654
No 40
>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains.
Probab=94.19 E-value=0.082 Score=38.92 Aligned_cols=56 Identities=25% Similarity=0.407 Sum_probs=41.5
Q ss_pred CCCHHHHHHHHHHHHhC------C-CC--CCCcHHHHHhhCC-----CCCHHHHHHHHHHHHHHHhchhc
Q 047185 155 VWNAGEDIALLNALKAF------P-KD--VPLRWEKIAAAVP-----GRSKAACMKRFSDLKRDFRSSKA 210 (214)
Q Consensus 155 ~WT~eED~~L~~al~~~------p-~~--~~~rW~kIA~~vP-----GRT~~qc~~Ry~~L~~~v~~~k~ 210 (214)
.||+++++.|+.++... + .+ .+.-|..|+..|- ..|..||++||+.|+.+....+.
T Consensus 1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~~~lk~~y~~~~~ 70 (96)
T PF12776_consen 1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKWKTLKKDYRIWKE 70 (96)
T ss_pred CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHHHHHH
Confidence 49999999999887655 1 11 1357999986543 34789999999999988776554
No 41
>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=94.00 E-value=0.075 Score=49.14 Aligned_cols=48 Identities=17% Similarity=0.289 Sum_probs=42.1
Q ss_pred cCCCCCCHHHHHHHHHHHHhCCCCCCcchhhHHHHcCCCCCHHHHHHHHHHh
Q 047185 55 EEEKEWNEEDIEILKKQMVKNPVGKPKRWEVIAEAFNGRHRVESVIKKAKEL 106 (214)
Q Consensus 55 ~~~~~WT~EE~~lL~kav~kyP~Gt~~RWe~IA~~lg~~RT~~qc~~k~k~l 106 (214)
+-...|+.+|--+|++++...+- ++|+-||.++| .|+.++|..+|-.+
T Consensus 61 I~~e~WgadEEllli~~~~TlGl---GNW~dIadyiG-sr~kee~k~HylK~ 108 (432)
T COG5114 61 IGEEGWGADEELLLIECLDTLGL---GNWEDIADYIG-SRAKEEIKSHYLKM 108 (432)
T ss_pred ccCCCcCchHHHHHHHHHHhcCC---CcHHHHHHHHh-hhhhHHHHHHHHHH
Confidence 56678999999999999999943 58999999999 89999999998543
No 42
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=93.89 E-value=0.068 Score=44.70 Aligned_cols=50 Identities=22% Similarity=0.403 Sum_probs=40.0
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCCC---CcHHHHHhhCCCCCHHHHHHHHHHHH
Q 047185 152 GGGVWNAGEDIALLNALKAFPKDVP---LRWEKIAAAVPGRSKAACMKRFSDLK 202 (214)
Q Consensus 152 ~~~~WT~eED~~L~~al~~~p~~~~---~rW~kIA~~vPGRT~~qc~~Ry~~L~ 202 (214)
..+.||.|||.+|...+-.|=..++ .-.+.++..+ +||...|-=||+..+
T Consensus 3 RQDAWT~eeDlLLAEtVLrhIReG~TQL~AFeEvg~~L-~RTsAACGFRWNs~V 55 (161)
T TIGR02894 3 RQDAWTHEEDLLLAETVLRHIREGSTQLSAFEEVGRAL-NRTAAACGFRWNAYV 55 (161)
T ss_pred cccccccHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH-cccHHHhcchHHHHH
Confidence 5679999999999999888755444 3457777777 999999999998654
No 43
>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones]
Probab=92.94 E-value=0.13 Score=46.71 Aligned_cols=60 Identities=23% Similarity=0.401 Sum_probs=53.9
Q ss_pred CCCCCHHHHHHHHHHHHhCCCC----CCCcHHHHHhhCCC-CCHHHHHHHHHHHHHHHhchhccc
Q 047185 153 GGVWNAGEDIALLNALKAFPKD----VPLRWEKIAAAVPG-RSKAACMKRFSDLKRDFRSSKAGD 212 (214)
Q Consensus 153 ~~~WT~eED~~L~~al~~~p~~----~~~rW~kIA~~vPG-RT~~qc~~Ry~~L~~~v~~~k~~~ 212 (214)
..-|+.++.+.++.||..|... ++++|.+++..||+ .+..+.+.+|..++.++..+.+++
T Consensus 31 ~~~~~~~~~k~i~ka~~i~~~~~~~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~~~~~~ 95 (335)
T KOG0724|consen 31 LSLWTEEEFKKIEKALAILDDDEPRRTPDSWDKFAEALPLEKRLEDKIEEYIGLVFDVNIRESGQ 95 (335)
T ss_pred hhhhHHHHHHHHHHHHHHHhccccccchhhhhHHHhcCccccccchhHHhhhhhHHHHhhhhccC
Confidence 4569999999999999999864 67899999999999 999999999999999998877654
No 44
>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices. It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.
Probab=92.12 E-value=0.27 Score=39.03 Aligned_cols=53 Identities=17% Similarity=0.268 Sum_probs=41.9
Q ss_pred cCCCCCCHHHHHHHHHHHHhCCCCCCcchhhHHHHcC-----------CCCCHHHHHHHHHHhh
Q 047185 55 EEEKEWNEEDIEILKKQMVKNPVGKPKRWEVIAEAFN-----------GRHRVESVIKKAKELG 107 (214)
Q Consensus 55 ~~~~~WT~EE~~lL~kav~kyP~Gt~~RWe~IA~~lg-----------~~RT~~qc~~k~k~l~ 107 (214)
.++..||++||.-|.-.+.+|+-++.+.|+.|-..+- .+||+.++-.|...|.
T Consensus 47 ~~~k~yseeEDRfLl~~~~~~G~~~~~~~e~Ik~~Ir~~p~FrFDwf~kSRt~~el~rR~~tLi 110 (118)
T PF09111_consen 47 NKKKVYSEEEDRFLLCMLYKYGYDAEGNWEKIKQEIRESPLFRFDWFFKSRTPQELQRRCNTLI 110 (118)
T ss_dssp SS-SSS-HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHH-CGGCT-HHHHTS-HHHHHHHHHHHH
T ss_pred CCCCCcCcHHHHHHHHHHHHhCCCCCchHHHHHHHHHhCCCcccchhcccCCHHHHHHHHHHHH
Confidence 4678999999999999999998788899999998773 2688888888876653
No 45
>KOG2656 consensus DNA methyltransferase 1-associated protein-1 [Chromatin structure and dynamics; Transcription]
Probab=91.18 E-value=0.27 Score=46.42 Aligned_cols=56 Identities=23% Similarity=0.311 Sum_probs=47.6
Q ss_pred CCCCCCCHHHHHHHHHHHHhCCCCCCCcHHHHHhh-----CCC-CCHHHHHHHHHHHHHHHhchhc
Q 047185 151 GGGGVWNAGEDIALLNALKAFPKDVPLRWEKIAAA-----VPG-RSKAACMKRFSDLKRDFRSSKA 210 (214)
Q Consensus 151 ~~~~~WT~eED~~L~~al~~~p~~~~~rW~kIA~~-----vPG-RT~~qc~~Ry~~L~~~v~~~k~ 210 (214)
.....||.+|-..|...++.|. -||.-||.. .+. ||.++.++||-+.+..+....+
T Consensus 128 l~dn~WskeETD~LF~lck~fD----LRf~VIaDRyd~qq~~~sRTvEdLKeRyY~v~r~l~kAr~ 189 (445)
T KOG2656|consen 128 LNDNSWSKEETDYLFDLCKRFD----LRFFVIADRYDNQQYKKSRTVEDLKERYYSVCRKLLKARA 189 (445)
T ss_pred hccccccHHHHHHHHHHHHhcC----eeEEEEeeccchhhccccccHHHHHHHHHHHHHHHHHccC
Confidence 5568999999999999999994 688888865 776 9999999999998887766554
No 46
>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription]
Probab=91.04 E-value=0.64 Score=42.40 Aligned_cols=60 Identities=22% Similarity=0.408 Sum_probs=47.7
Q ss_pred CCCCCHHHHHHHHHHHHhCCC------CCCCcHHHHHhhC----CCCCHHHHHHHHHHHHHHHhchhccc
Q 047185 153 GGVWNAGEDIALLNALKAFPK------DVPLRWEKIAAAV----PGRSKAACMKRFSDLKRDFRSSKAGD 212 (214)
Q Consensus 153 ~~~WT~eED~~L~~al~~~p~------~~~~rW~kIA~~v----PGRT~~qc~~Ry~~L~~~v~~~k~~~ 212 (214)
...|+.+|=..|+.+...... ....-|..||..+ --||+.||+++|+.|...++..++..
T Consensus 54 ~~~Ws~~et~~Li~~~~~~~~~~~~~~~k~~~We~va~k~~~~g~~rs~~qck~K~~nl~k~Yk~~k~~~ 123 (345)
T KOG4282|consen 54 EPRWSEEETLTLIEIRGEMDVALRRGKLKGPLWEEVARKMAELGYPRSPKQCKAKIENLKKKYKKEKAKK 123 (345)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHhccc
Confidence 489999999999998765422 1256799999733 36999999999999999998887653
No 47
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=90.44 E-value=0.29 Score=41.32 Aligned_cols=52 Identities=15% Similarity=0.221 Sum_probs=39.0
Q ss_pred CCCCCCCHHHHHHHHHHHHhCCCCCCCcHHHHH--hhCCCCCHHHHHHHHHHHH
Q 047185 151 GGGGVWNAGEDIALLNALKAFPKDVPLRWEKIA--AAVPGRSKAACMKRFSDLK 202 (214)
Q Consensus 151 ~~~~~WT~eED~~L~~al~~~p~~~~~rW~kIA--~~vPGRT~~qc~~Ry~~L~ 202 (214)
.....||.|+|.+|...+-.|...++.+-.-+. ...-+||..+|.-||+..+
T Consensus 3 ~rqdawt~e~d~llae~vl~~i~eg~tql~afe~~g~~L~rt~aac~fRwNs~v 56 (170)
T PRK13923 3 TRQDAWTQERDGLLAEVVLRHIREGGTQLKAFEEVGDALKRTAAACGFRWNSVV 56 (170)
T ss_pred chhhhhhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHhhhHHHHHhHHHHHH
Confidence 457899999999999998888776665543332 2334999999999996543
No 48
>KOG4167 consensus Predicted DNA-binding protein, contains SANT and ELM2 domains [Transcription]
Probab=90.42 E-value=0.44 Score=48.29 Aligned_cols=48 Identities=8% Similarity=0.220 Sum_probs=42.2
Q ss_pred cCCCCCCHHHHHHHHHHHHhCCCCCCcchhhHHHHcCCCCCHHHHHHHHHHhh
Q 047185 55 EEEKEWNEEDIEILKKQMVKNPVGKPKRWEVIAEAFNGRHRVESVIKKAKELG 107 (214)
Q Consensus 55 ~~~~~WT~EE~~lL~kav~kyP~Gt~~RWe~IA~~lg~~RT~~qc~~k~k~l~ 107 (214)
.....||..|..++.+|+-.| ...+..|+.+|. ++|+.||.+.|-..+
T Consensus 617 ~gSd~WTp~E~~lF~kA~y~~----~KDF~~v~km~~-~KtVaqCVeyYYtWK 664 (907)
T KOG4167|consen 617 AGSDKWTPLERKLFNKALYTY----SKDFIFVQKMVK-SKTVAQCVEYYYTWK 664 (907)
T ss_pred cCcccccHHHHHHHHHHHHHh----cccHHHHHHHhc-cccHHHHHHHHHHHH
Confidence 567789999999999999998 368999999998 799999999985543
No 49
>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]
Probab=89.75 E-value=0.61 Score=44.16 Aligned_cols=46 Identities=17% Similarity=0.341 Sum_probs=40.9
Q ss_pred cCCCCCCHHHHHHHHHHHHhCCCCCCcchhhHHHHcCCCCCHHHHHHHHHH
Q 047185 55 EEEKEWNEEDIEILKKQMVKNPVGKPKRWEVIAEAFNGRHRVESVIKKAKE 105 (214)
Q Consensus 55 ~~~~~WT~EE~~lL~kav~kyP~Gt~~RWe~IA~~lg~~RT~~qc~~k~k~ 105 (214)
...-.||.+|++.+-||+.++ || .+.+|+..++ +|..+||-.+|..
T Consensus 363 ~~~~~Ws~~e~ekFYKALs~w--Gt--dF~LIs~lfP-~R~RkqIKaKfi~ 408 (507)
T COG5118 363 KGALRWSKKEIEKFYKALSIW--GT--DFSLISSLFP-NRERKQIKAKFIK 408 (507)
T ss_pred CCCCcccHHHHHHHHHHHHHh--cc--hHHHHHHhcC-chhHHHHHHHHHH
Confidence 455689999999999999999 67 5999999999 7999999988864
No 50
>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains.
Probab=89.48 E-value=1.1 Score=32.76 Aligned_cols=50 Identities=28% Similarity=0.459 Sum_probs=38.1
Q ss_pred CCCHHHHHHHHHHHHh------CC-CCC--CcchhhHHHHcC----CCCCHHHHHHHHHHhhh
Q 047185 59 EWNEEDIEILKKQMVK------NP-VGK--PKRWEVIAEAFN----GRHRVESVIKKAKELGE 108 (214)
Q Consensus 59 ~WT~EE~~lL~kav~k------yP-~Gt--~~RWe~IA~~lg----~~RT~~qc~~k~k~l~~ 108 (214)
.||.+++..|..++.. +| .|. +..|..|+..|. ...|..||..||+.++.
T Consensus 1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~~~lk~ 63 (96)
T PF12776_consen 1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKWKTLKK 63 (96)
T ss_pred CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHH
Confidence 4999999999888733 33 232 245999999884 46799999999998864
No 51
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=89.07 E-value=0.39 Score=40.22 Aligned_cols=50 Identities=12% Similarity=0.243 Sum_probs=41.4
Q ss_pred CCCCCHHHHHHHHHHHHhC--CCCCC-cchhhHHHHcCCCCCHHHHHHHHHHhhh
Q 047185 57 EKEWNEEDIEILKKQMVKN--PVGKP-KRWEVIAEAFNGRHRVESVIKKAKELGE 108 (214)
Q Consensus 57 ~~~WT~EE~~lL~kav~ky--P~Gt~-~RWe~IA~~lg~~RT~~qc~~k~k~l~~ 108 (214)
...||+|||.+|...|-.| -|||. .-.+-++..|+ ||+--|-.||+....
T Consensus 4 QDAWT~eeDlLLAEtVLrhIReG~TQL~AFeEvg~~L~--RTsAACGFRWNs~VR 56 (161)
T TIGR02894 4 QDAWTHEEDLLLAETVLRHIREGSTQLSAFEEVGRALN--RTAAACGFRWNAYVR 56 (161)
T ss_pred ccccccHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHc--ccHHHhcchHHHHHH
Confidence 4579999999999999765 34553 45999999997 999999999987654
No 52
>smart00595 MADF subfamily of SANT domain.
Probab=87.93 E-value=0.71 Score=33.50 Aligned_cols=30 Identities=37% Similarity=0.767 Sum_probs=25.3
Q ss_pred CcHHHHHhhCCCCCHHHHHHHHHHHHHHHhc
Q 047185 177 LRWEKIAAAVPGRSKAACMKRFSDLKRDFRS 207 (214)
Q Consensus 177 ~rW~kIA~~vPGRT~~qc~~Ry~~L~~~v~~ 207 (214)
.-|..||..+ |.|..+|+.+|+.|+..+..
T Consensus 28 ~aW~~Ia~~l-~~~~~~~~~kw~~LR~~y~~ 57 (89)
T smart00595 28 KAWEEIAEEL-GLSVEECKKRWKNLRDRYRR 57 (89)
T ss_pred HHHHHHHHHH-CcCHHHHHHHHHHHHHHHHH
Confidence 4699999999 45999999999999876554
No 53
>KOG3841 consensus TEF-1 and related transcription factor, TEAD family [Transcription]
Probab=87.19 E-value=1.2 Score=42.09 Aligned_cols=60 Identities=17% Similarity=0.262 Sum_probs=46.8
Q ss_pred hhhhhc-cCCCCCCHHHHHHHHHHHHhCCC-CC-----------CcchhhHHHHc----CCCCCHHHHHHHHHHhhh
Q 047185 49 VLQRKS-EEEKEWNEEDIEILKKQMVKNPV-GK-----------PKRWEVIAEAF----NGRHRVESVIKKAKELGE 108 (214)
Q Consensus 49 ~~~~~~-~~~~~WT~EE~~lL~kav~kyP~-Gt-----------~~RWe~IA~~l----g~~RT~~qc~~k~k~l~~ 108 (214)
+|..+. ...+.|+.+=.+.+..|+..||+ |+ -+|=|.||.|+ |.+||.+||.-+-+=+.+
T Consensus 67 ~~~D~~~daegvWSpdIEqsFqEALaiyppcGrrKIilsdegkmyGRNELIarYIKlrtgktRTrKQVSSHIQVlar 143 (455)
T KOG3841|consen 67 KFTDNQRDAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLAR 143 (455)
T ss_pred cCCccccccccccChhHHHHHHHHHhhcCCCCceeEEEccCccccchHHHHHHHHHHhcCCchhHHHHHHHHHHHHH
Confidence 344444 56789999999999999999998 43 26889999999 568999998876654443
No 54
>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif. The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.
Probab=85.37 E-value=2.2 Score=30.37 Aligned_cols=48 Identities=23% Similarity=0.246 Sum_probs=30.9
Q ss_pred CCCCHHHHHHHHHHHHhC---CCC--CCcchhhHHHHcCCCCCHHHHHHHHHH
Q 047185 58 KEWNEEDIEILKKQMVKN---PVG--KPKRWEVIAEAFNGRHRVESVIKKAKE 105 (214)
Q Consensus 58 ~~WT~EE~~lL~kav~ky---P~G--t~~RWe~IA~~lg~~RT~~qc~~k~k~ 105 (214)
.++|.|||.+|.+-|..| |+. ...=|..+++.-++++|-..-..+|..
T Consensus 3 ~~fT~edD~~l~~~v~~~~~~~~~~~Gn~iwk~le~~~~t~HtwQSwR~Ry~K 55 (65)
T PF08914_consen 3 TPFTEEDDAALLDYVKENERQGGSVSGNKIWKELEEKHPTRHTWQSWRDRYLK 55 (65)
T ss_dssp ----HHHHHHHHHHHHHT--STTTTTSSHHHHHHHHS-SSS--SHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 478999999999999654 321 123499999987767898888888843
No 55
>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif. The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.
Probab=84.63 E-value=1.8 Score=30.87 Aligned_cols=50 Identities=18% Similarity=0.324 Sum_probs=32.1
Q ss_pred CCCCCHHHHHHHHHHHHhCCCC-----CCCcHHHHHhhCC-CCCHHHHHHHHH-HHH
Q 047185 153 GGVWNAGEDIALLNALKAFPKD-----VPLRWEKIAAAVP-GRSKAACMKRFS-DLK 202 (214)
Q Consensus 153 ~~~WT~eED~~L~~al~~~p~~-----~~~rW~kIA~~vP-GRT~~qc~~Ry~-~L~ 202 (214)
..+.|.+||.+|..-|..+... +..=|..++...| ..|-..-++||. .|.
T Consensus 2 R~~fT~edD~~l~~~v~~~~~~~~~~~Gn~iwk~le~~~~t~HtwQSwR~Ry~K~L~ 58 (65)
T PF08914_consen 2 RTPFTEEDDAALLDYVKENERQGGSVSGNKIWKELEEKHPTRHTWQSWRDRYLKHLR 58 (65)
T ss_dssp -----HHHHHHHHHHHHHT--STTTTTSSHHHHHHHHS-SSS--SHHHHHHHHHHT-
T ss_pred CCCCCHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence 3578999999999999776432 2357999998888 888888899994 443
No 56
>KOG4329 consensus DNA-binding protein [General function prediction only]
Probab=84.05 E-value=1.7 Score=41.06 Aligned_cols=46 Identities=17% Similarity=0.192 Sum_probs=39.5
Q ss_pred CCCCCCCHHHHHHHHHHHHhCCCCCCCcHHHHH-hhCCCCCHHHHHHHHHH
Q 047185 151 GGGGVWNAGEDIALLNALKAFPKDVPLRWEKIA-AAVPGRSKAACMKRFSD 200 (214)
Q Consensus 151 ~~~~~WT~eED~~L~~al~~~p~~~~~rW~kIA-~~vPGRT~~qc~~Ry~~ 200 (214)
-.-..||.+|=+.|+++|+.|++ ....|. ..|+.||.-+|...|-.
T Consensus 275 d~l~~wsEeEcr~FEegl~~yGK----DF~lIr~nkvrtRsvgElVeyYYl 321 (445)
T KOG4329|consen 275 DDLSGWSEEECRNFEEGLELYGK----DFHLIRANKVRTRSVGELVEYYYL 321 (445)
T ss_pred cccccCCHHHHHHHHHHHHHhcc----cHHHHHhcccccchHHHHHHHHHH
Confidence 34579999999999999999975 677776 68999999999998843
No 57
>KOG1194 consensus Predicted DNA-binding protein, contains Myb-like, SANT and ELM2 domains [Transcription]
Probab=83.96 E-value=2.6 Score=40.75 Aligned_cols=47 Identities=21% Similarity=0.389 Sum_probs=40.9
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCCCcchhhHHHHcCCCCCHHHHHHHHHHhhh
Q 047185 57 EKEWNEEDIEILKKQMVKNPVGKPKRWEVIAEAFNGRHRVESVIKKAKELGE 108 (214)
Q Consensus 57 ~~~WT~EE~~lL~kav~kyP~Gt~~RWe~IA~~lg~~RT~~qc~~k~k~l~~ 108 (214)
...||.||+.+|.++.+.| |+ +..+|-.+|+ .|+..++++.|-..+.
T Consensus 187 ~d~WT~Ed~vlFe~aF~~~--GK--~F~kIrq~LP-~rsLaSlvqyYy~~KK 233 (534)
T KOG1194|consen 187 PDEWTAEDIVLFEQAFQFF--GK--DFHKIRQALP-HRSLASLVQYYYSWKK 233 (534)
T ss_pred cccchHHHHHHHHHHHHHh--cc--cHHHHHHHcc-CccHHHHHHHHHHHHH
Confidence 4579999999999999999 44 7999999999 8999999988865543
No 58
>PF13404 HTH_AsnC-type: AsnC-type helix-turn-helix domain; PDB: 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2VC1_B 2QZ8_A 2W29_C 2IVM_B 2VBX_B ....
Probab=83.77 E-value=3.4 Score=26.75 Aligned_cols=39 Identities=21% Similarity=0.295 Sum_probs=30.5
Q ss_pred HHHHHHHHHHhCCCCCCCcHHHHHhhCCCCCHHHHHHHHHHHH
Q 047185 160 EDIALLNALKAFPKDVPLRWEKIAAAVPGRSKAACMKRFSDLK 202 (214)
Q Consensus 160 ED~~L~~al~~~p~~~~~rW~kIA~~vPGRT~~qc~~Ry~~L~ 202 (214)
=|..|..+|..-+ ...|..||..+ |=|...|..|++.|.
T Consensus 4 ~D~~Il~~Lq~d~---r~s~~~la~~l-glS~~~v~~Ri~rL~ 42 (42)
T PF13404_consen 4 LDRKILRLLQEDG---RRSYAELAEEL-GLSESTVRRRIRRLE 42 (42)
T ss_dssp HHHHHHHHHHH-T---TS-HHHHHHHH-TS-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC---CccHHHHHHHH-CcCHHHHHHHHHHhC
Confidence 3778888888764 47899999988 999999999998873
No 59
>KOG2656 consensus DNA methyltransferase 1-associated protein-1 [Chromatin structure and dynamics; Transcription]
Probab=83.58 E-value=1.1 Score=42.47 Aligned_cols=49 Identities=18% Similarity=0.323 Sum_probs=42.2
Q ss_pred hccCCCCCCHHHHHHHHHHHHhCCCCCCcchhhHHHH-----cCCCCCHHHHHHHHHH
Q 047185 53 KSEEEKEWNEEDIEILKKQMVKNPVGKPKRWEVIAEA-----FNGRHRVESVIKKAKE 105 (214)
Q Consensus 53 ~~~~~~~WT~EE~~lL~kav~kyP~Gt~~RWe~IA~~-----lg~~RT~~qc~~k~k~ 105 (214)
+.-+...||.+|..-|-.++..|- -||-.||.. ++..||+++.-++|=.
T Consensus 126 ~~l~dn~WskeETD~LF~lck~fD----LRf~VIaDRyd~qq~~~sRTvEdLKeRyY~ 179 (445)
T KOG2656|consen 126 AHLNDNSWSKEETDYLFDLCKRFD----LRFFVIADRYDNQQYKKSRTVEDLKERYYS 179 (445)
T ss_pred HhhccccccHHHHHHHHHHHHhcC----eeEEEEeeccchhhccccccHHHHHHHHHH
Confidence 335668899999999999999994 699999997 6767999999999954
No 60
>KOG1194 consensus Predicted DNA-binding protein, contains Myb-like, SANT and ELM2 domains [Transcription]
Probab=83.58 E-value=2.8 Score=40.53 Aligned_cols=48 Identities=25% Similarity=0.344 Sum_probs=42.5
Q ss_pred CCCCCCCHHHHHHHHHHHHhCCCCCCCcHHHHHhhCCCCCHHHHHHHHHHHH
Q 047185 151 GGGGVWNAGEDIALLNALKAFPKDVPLRWEKIAAAVPGRSKAACMKRFSDLK 202 (214)
Q Consensus 151 ~~~~~WT~eED~~L~~al~~~p~~~~~rW~kIA~~vPGRT~~qc~~Ry~~L~ 202 (214)
.-...||.|+--+|+++...|+ .+..+|...+|.||-......|-..+
T Consensus 185 ~~~d~WT~Ed~vlFe~aF~~~G----K~F~kIrq~LP~rsLaSlvqyYy~~K 232 (534)
T KOG1194|consen 185 EFPDEWTAEDIVLFEQAFQFFG----KDFHKIRQALPHRSLASLVQYYYSWK 232 (534)
T ss_pred CCcccchHHHHHHHHHHHHHhc----ccHHHHHHHccCccHHHHHHHHHHHH
Confidence 4568999999999999999996 59999999999999999998885543
No 61
>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]
Probab=83.09 E-value=2.1 Score=40.67 Aligned_cols=45 Identities=20% Similarity=0.339 Sum_probs=41.2
Q ss_pred CCCCCCCHHHHHHHHHHHHhCCCCCCCcHHHHHhhCCCCCHHHHHHHHH
Q 047185 151 GGGGVWNAGEDIALLNALKAFPKDVPLRWEKIAAAVPGRSKAACMKRFS 199 (214)
Q Consensus 151 ~~~~~WT~eED~~L~~al~~~p~~~~~rW~kIA~~vPGRT~~qc~~Ry~ 199 (214)
....+||..|-..|-.||..++ .....|+..+|.|.-.|++..|.
T Consensus 363 ~~~~~Ws~~e~ekFYKALs~wG----tdF~LIs~lfP~R~RkqIKaKfi 407 (507)
T COG5118 363 KGALRWSKKEIEKFYKALSIWG----TDFSLISSLFPNRERKQIKAKFI 407 (507)
T ss_pred CCCCcccHHHHHHHHHHHHHhc----chHHHHHHhcCchhHHHHHHHHH
Confidence 4567999999999999999995 68999999999999999999985
No 62
>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription]
Probab=82.34 E-value=2.8 Score=38.18 Aligned_cols=51 Identities=24% Similarity=0.292 Sum_probs=38.4
Q ss_pred CCCCCHHHHHHHHHHHHh----CCCCCC--cchhhHHHH---cCCCCCHHHHHHHHHHhh
Q 047185 57 EKEWNEEDIEILKKQMVK----NPVGKP--KRWEVIAEA---FNGRHRVESVIKKAKELG 107 (214)
Q Consensus 57 ~~~WT~EE~~lL~kav~k----yP~Gt~--~RWe~IA~~---lg~~RT~~qc~~k~k~l~ 107 (214)
...|+.+|...|+.+-.. |.-|+. .-|+.||.. .|-.||+.||..++..|.
T Consensus 54 ~~~Ws~~et~~Li~~~~~~~~~~~~~~~k~~~We~va~k~~~~g~~rs~~qck~K~~nl~ 113 (345)
T KOG4282|consen 54 EPRWSEEETLTLIEIRGEMDVALRRGKLKGPLWEEVARKMAELGYPRSPKQCKAKIENLK 113 (345)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 378999999999998644 222221 249999994 366899999999998764
No 63
>PF10545 MADF_DNA_bdg: Alcohol dehydrogenase transcription factor Myb/SANT-like; InterPro: IPR006578 The MADF (myb/SANT-like domain in Adf-1) domain is an approximately 80-amino-acid module that directs sequence specific DNA binding to a site consisting of multiple tri-nucleotide repeats. The MADF domain is found in one or more copies in eukaryotic and viral proteins and is often associated with the BESS domain []. MADF is related to the Myb DNA-binding domain (IPR001005 from INTERPRO). The retroviral oncogene v-myb, and its cellular counterpart c-myb, are nuclear DNA-binding proteins that specifically recognise the sequence YAAC(G/T)G. It is likely that the MADF domain is more closely related to the myb/SANT domain than it is to other HTH domains. Some proteins known to contain a MADF domain are listed below: Drosophila Adf-1, a transcription factor first identified on the basis of its interaction with the alcohol dehydrogenase promoter but that binds the promoters of a diverse group of genes []. Drosophila Dorsal-interacting protein 3 (Dip3), which functions both as an activator to bind DNA in a sequence specific manner and a coactivator to stimulate synergistic activation by Dorsal and Twist []. Drosophila Stonewall (Stwl), a putative transcription factor required for maintenance of female germline stem cells as well as oocyte differentiation.
Probab=82.31 E-value=1.8 Score=30.45 Aligned_cols=33 Identities=27% Similarity=0.536 Sum_probs=27.1
Q ss_pred CcHHHHHhhCCC-CCHHHHHHHHHHHHHHHhchh
Q 047185 177 LRWEKIAAAVPG-RSKAACMKRFSDLKRDFRSSK 209 (214)
Q Consensus 177 ~rW~kIA~~vPG-RT~~qc~~Ry~~L~~~v~~~k 209 (214)
.-|..||..+.+ -+..+|+.||..|+..+...+
T Consensus 27 ~aw~~Ia~~l~~~~~~~~~~~~w~~Lr~~y~~~~ 60 (85)
T PF10545_consen 27 EAWQEIARELGKEFSVDDCKKRWKNLRDRYRREL 60 (85)
T ss_pred HHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHH
Confidence 469999999963 578899999999998776654
No 64
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=79.91 E-value=2.3 Score=35.92 Aligned_cols=50 Identities=14% Similarity=0.300 Sum_probs=39.3
Q ss_pred CCCCCHHHHHHHHHHHHhCCC--CCC-cchhhHHHHcCCCCCHHHHHHHHHHhhh
Q 047185 57 EKEWNEEDIEILKKQMVKNPV--GKP-KRWEVIAEAFNGRHRVESVIKKAKELGE 108 (214)
Q Consensus 57 ~~~WT~EE~~lL~kav~kyP~--Gt~-~RWe~IA~~lg~~RT~~qc~~k~k~l~~ 108 (214)
...||.||+.+|...|-.|-. ||. .-.+.++..|+ ||+-.|-.+|+....
T Consensus 5 qdawt~e~d~llae~vl~~i~eg~tql~afe~~g~~L~--rt~aac~fRwNs~vr 57 (170)
T PRK13923 5 QDAWTQERDGLLAEVVLRHIREGGTQLKAFEEVGDALK--RTAAACGFRWNSVVR 57 (170)
T ss_pred hhhhhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHh--hhHHHHHhHHHHHHH
Confidence 467999999999999877732 332 34788888997 999999999976544
No 65
>smart00595 MADF subfamily of SANT domain.
Probab=78.83 E-value=2.3 Score=30.81 Aligned_cols=24 Identities=42% Similarity=0.558 Sum_probs=22.0
Q ss_pred chhhHHHHcCCCCCHHHHHHHHHHhh
Q 047185 82 RWEVIAEAFNGRHRVESVIKKAKELG 107 (214)
Q Consensus 82 RWe~IA~~lg~~RT~~qc~~k~k~l~ 107 (214)
-|..||..|| .|+.+|..+|+.|.
T Consensus 29 aW~~Ia~~l~--~~~~~~~~kw~~LR 52 (89)
T smart00595 29 AWEEIAEELG--LSVEECKKRWKNLR 52 (89)
T ss_pred HHHHHHHHHC--cCHHHHHHHHHHHH
Confidence 4999999998 49999999999985
No 66
>PF11035 SnAPC_2_like: Small nuclear RNA activating complex subunit 2-like; InterPro: IPR021281 This family of proteins is SnAPC subunit 2-like. SnAPC allows the transcription of human small nuclear RNA genes to occur by recognition of the proximal sequence element [].
Probab=77.80 E-value=7.6 Score=36.04 Aligned_cols=57 Identities=28% Similarity=0.352 Sum_probs=44.7
Q ss_pred CCCCCCCHHHHHHHHHHHHhCCCCCCCcHHHHHhhCCCCCHHHHHHHHHHHHHHHhc
Q 047185 151 GGGGVWNAGEDIALLNALKAFPKDVPLRWEKIAAAVPGRSKAACMKRFSDLKRDFRS 207 (214)
Q Consensus 151 ~~~~~WT~eED~~L~~al~~~p~~~~~rW~kIA~~vPGRT~~qc~~Ry~~L~~~v~~ 207 (214)
.....||.-|-+.|+.+|..-.......-..|+..||||+..|+++-...|+..|.+
T Consensus 19 ~gp~~Ws~rEkr~Llr~Lqar~g~~epd~ael~~~l~~Rs~aEI~~fl~~LK~rvar 75 (344)
T PF11035_consen 19 TGPAAWSAREKRQLLRLLQARRGQPEPDAAELAKELPGRSEAEIRDFLQQLKGRVAR 75 (344)
T ss_pred CCcccCcHHHHHHHHHHHHHhcCCCCcCHHHHHhhccCcCHHHHHHHHHHHHHHHHH
Confidence 345799999999999999875322234556799999999999999988888766543
No 67
>KOG4468 consensus Polycomb-group transcriptional regulator [Transcription]
Probab=75.75 E-value=4.7 Score=40.35 Aligned_cols=49 Identities=22% Similarity=0.413 Sum_probs=41.0
Q ss_pred CCCCCCCHHHHHHHHHHHHhCCCCCCCcHHHH----------HhhCCCCCHHHHHHHHHHHHH
Q 047185 151 GGGGVWNAGEDIALLNALKAFPKDVPLRWEKI----------AAAVPGRSKAACMKRFSDLKR 203 (214)
Q Consensus 151 ~~~~~WT~eED~~L~~al~~~p~~~~~rW~kI----------A~~vPGRT~~qc~~Ry~~L~~ 203 (214)
..+..||..|...|..||++|++ ..++| -..+--||..|++.+|-.++.
T Consensus 86 ~~ktaWt~~E~~~Ffdal~~~GK----dFe~VinaklKRrna~s~~~~Ktkdqvr~~yY~~~~ 144 (782)
T KOG4468|consen 86 WAKTAWTHQEEESFFDALRQVGK----DFEKVINAKLKRRNATSRVQSKTKDQVRHYYYRLVR 144 (782)
T ss_pred ccccccchhhHHHHHHHHHHhcc----cHHHHHHHHHHhcccccchhhhhhHHHHHHHHHHHH
Confidence 45789999999999999999975 78888 456778999999999866543
No 68
>PF10545 MADF_DNA_bdg: Alcohol dehydrogenase transcription factor Myb/SANT-like; InterPro: IPR006578 The MADF (myb/SANT-like domain in Adf-1) domain is an approximately 80-amino-acid module that directs sequence specific DNA binding to a site consisting of multiple tri-nucleotide repeats. The MADF domain is found in one or more copies in eukaryotic and viral proteins and is often associated with the BESS domain []. MADF is related to the Myb DNA-binding domain (IPR001005 from INTERPRO). The retroviral oncogene v-myb, and its cellular counterpart c-myb, are nuclear DNA-binding proteins that specifically recognise the sequence YAAC(G/T)G. It is likely that the MADF domain is more closely related to the myb/SANT domain than it is to other HTH domains. Some proteins known to contain a MADF domain are listed below: Drosophila Adf-1, a transcription factor first identified on the basis of its interaction with the alcohol dehydrogenase promoter but that binds the promoters of a diverse group of genes []. Drosophila Dorsal-interacting protein 3 (Dip3), which functions both as an activator to bind DNA in a sequence specific manner and a coactivator to stimulate synergistic activation by Dorsal and Twist []. Drosophila Stonewall (Stwl), a putative transcription factor required for maintenance of female germline stem cells as well as oocyte differentiation.
Probab=73.50 E-value=3.6 Score=28.83 Aligned_cols=27 Identities=26% Similarity=0.454 Sum_probs=23.9
Q ss_pred cchhhHHHHcCCCCCHHHHHHHHHHhh
Q 047185 81 KRWEVIAEAFNGRHRVESVIKKAKELG 107 (214)
Q Consensus 81 ~RWe~IA~~lg~~RT~~qc~~k~k~l~ 107 (214)
.-|..||..||..-++.+|..+|+.|.
T Consensus 27 ~aw~~Ia~~l~~~~~~~~~~~~w~~Lr 53 (85)
T PF10545_consen 27 EAWQEIARELGKEFSVDDCKKRWKNLR 53 (85)
T ss_pred HHHHHHHHHHccchhHHHHHHHHHHHH
Confidence 349999999997789999999999985
No 69
>PF04504 DUF573: Protein of unknown function, DUF573; InterPro: IPR007592 This is a family of uncharacterised proteins.
Probab=69.42 E-value=11 Score=28.62 Aligned_cols=55 Identities=22% Similarity=0.411 Sum_probs=38.2
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCC----CCcHHHHHhhCCC-----CCHHHHHHHHHHHHHHHhc
Q 047185 153 GGVWNAGEDIALLNALKAFPKDV----PLRWEKIAAAVPG-----RSKAACMKRFSDLKRDFRS 207 (214)
Q Consensus 153 ~~~WT~eED~~L~~al~~~p~~~----~~rW~kIA~~vPG-----RT~~qc~~Ry~~L~~~v~~ 207 (214)
..-||.+++-.|++++..|-... ...|..+-..|-+ =|..|..+....|+..+..
T Consensus 4 qR~WS~eDEi~iL~gl~~~~~~~G~~p~~d~~~f~~~vk~~l~~~~s~~Ql~~KirrLK~Ky~~ 67 (98)
T PF04504_consen 4 QRLWSEEDEIVILQGLIDFRAKTGKSPQPDMNAFYDFVKGSLSFDVSKNQLYDKIRRLKKKYRN 67 (98)
T ss_pred cCCCCchHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHH
Confidence 45699999999999999994322 2566544444422 3888988888887765443
No 70
>PF00674 DUP: DUP family; InterPro: IPR001142 A number of uncharacterised integral membrane proteins from yeast contain an internal duplication due to duplicated genes. Duplicated copies of genes may be classified in two types of cluster organisation. The first type includes genes sharing a significant level of identity in the amino acid sequences of their predicted protein product. They are recovered on two different chromosomes, transcribed in the same orientation and the distance between them is conserved. The second type of cluster is based on one gene unit tandemly repeated. This duplication is itself repeated elsewhere in the genome. The basic gene unit is recovered many times in the genome and is a component of a multigene family of unknown function. These organisations in clusters of genes suggest a 'Lego organisation' of the yeast chromosomes []. The proteins belonging to this family are of unknown function.
Probab=67.53 E-value=5.8 Score=30.46 Aligned_cols=27 Identities=30% Similarity=0.585 Sum_probs=23.6
Q ss_pred HHHHHHHHHhCCCCCCcchhhHHHHcC
Q 047185 65 IEILKKQMVKNPVGKPKRWEVIAEAFN 91 (214)
Q Consensus 65 ~~lL~kav~kyP~Gt~~RWe~IA~~lg 91 (214)
.++|...+..-|+.....|+.||..|+
T Consensus 44 ~kfl~eIi~~~P~~d~~~Wd~IA~~mN 70 (108)
T PF00674_consen 44 MKFLKEIIEVKPGVDMKKWDIIASRMN 70 (108)
T ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHH
Confidence 678888888888878889999999997
No 71
>PRK11169 leucine-responsive transcriptional regulator; Provisional
Probab=65.51 E-value=13 Score=30.34 Aligned_cols=42 Identities=26% Similarity=0.391 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHhCCCCCCCcHHHHHhhCCCCCHHHHHHHHHHHHHH
Q 047185 159 GEDIALLNALKAFPKDVPLRWEKIAAAVPGRSKAACMKRFSDLKRD 204 (214)
Q Consensus 159 eED~~L~~al~~~p~~~~~rW~kIA~~vPGRT~~qc~~Ry~~L~~~ 204 (214)
+-|..|+.+|..-+ ...|..||..| |-|...|.+|++.|.+.
T Consensus 14 ~~D~~IL~~Lq~d~---R~s~~eiA~~l-glS~~tv~~Ri~rL~~~ 55 (164)
T PRK11169 14 RIDRNILNELQKDG---RISNVELSKRV-GLSPTPCLERVRRLERQ 55 (164)
T ss_pred HHHHHHHHHhccCC---CCCHHHHHHHH-CcCHHHHHHHHHHHHHC
Confidence 45778888887654 47999999988 99999999999999764
No 72
>PF07750 GcrA: GcrA cell cycle regulator; InterPro: IPR011681 GcrA, together with CtrA (see IPR001789 from INTERPRO and IPR001867 from INTERPRO), form a master cell cycle regulator. These bacterial regulators are involved in controlling the progression and asymmetric polar morphogenesis []. During this process, there are temporal and spatial variations in the concentrations of GcrA and CtrA. The variation in concentration produces time and space dependent transcriptional regulation of modular functions that implement cell-cycle processes []. More specifically, GcrA acts as an activator of components of the replisome and the segregation machinery [].
Probab=64.50 E-value=11 Score=31.38 Aligned_cols=43 Identities=33% Similarity=0.490 Sum_probs=34.5
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCcchhhHHHHcCCCCCHHHHHHHHHHhh
Q 047185 59 EWNEEDIEILKKQMVKNPVGKPKRWEVIAEAFNGRHRVESVIKKAKELG 107 (214)
Q Consensus 59 ~WT~EE~~lL~kav~kyP~Gt~~RWe~IA~~lg~~RT~~qc~~k~k~l~ 107 (214)
.||+|.+++|.++-.. |-. =..||..|| +.|.--||=++.-|+
T Consensus 2 ~Wtde~~~~L~~lw~~---G~S--asqIA~~lg-~vsRnAViGk~hRlg 44 (162)
T PF07750_consen 2 SWTDERVERLRKLWAE---GLS--ASQIARQLG-GVSRNAVIGKAHRLG 44 (162)
T ss_pred CCCHHHHHHHHHHHHc---CCC--HHHHHHHhC-Ccchhhhhhhhhccc
Confidence 5999999999999754 433 678999999 677888888877653
No 73
>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones]
Probab=64.35 E-value=6.8 Score=35.45 Aligned_cols=50 Identities=26% Similarity=0.434 Sum_probs=42.3
Q ss_pred CCCCCHHHHHHHHHHHHhCCCC----CCcchhhHHHHcCCCCCHHHHHHHHHHh
Q 047185 57 EKEWNEEDIEILKKQMVKNPVG----KPKRWEVIAEAFNGRHRVESVIKKAKEL 106 (214)
Q Consensus 57 ~~~WT~EE~~lL~kav~kyP~G----t~~RWe~IA~~lg~~RT~~qc~~k~k~l 106 (214)
...|+.++...+.+++..|... ++++|+.+++.+++-.+..+++.+|..+
T Consensus 31 ~~~~~~~~~k~i~ka~~i~~~~~~~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~ 84 (335)
T KOG0724|consen 31 LSLWTEEEFKKIEKALAILDDDEPRRTPDSWDKFAEALPLEKRLEDKIEEYIGL 84 (335)
T ss_pred hhhhHHHHHHHHHHHHHHHhccccccchhhhhHHHhcCccccccchhHHhhhhh
Confidence 3569999999999999999876 7789999999999437888888888654
No 74
>PRK11179 DNA-binding transcriptional regulator AsnC; Provisional
Probab=64.33 E-value=20 Score=28.84 Aligned_cols=42 Identities=21% Similarity=0.264 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHhCCCCCCCcHHHHHhhCCCCCHHHHHHHHHHHHHH
Q 047185 159 GEDIALLNALKAFPKDVPLRWEKIAAAVPGRSKAACMKRFSDLKRD 204 (214)
Q Consensus 159 eED~~L~~al~~~p~~~~~rW~kIA~~vPGRT~~qc~~Ry~~L~~~ 204 (214)
+-|..|..+|..-+ ...|..||..+ |-|...|..|++.|.+.
T Consensus 9 ~~D~~Il~~Lq~d~---R~s~~eiA~~l-glS~~tV~~Ri~rL~~~ 50 (153)
T PRK11179 9 NLDRGILEALMENA---RTPYAELAKQF-GVSPGTIHVRVEKMKQA 50 (153)
T ss_pred HHHHHHHHHHHHcC---CCCHHHHHHHH-CcCHHHHHHHHHHHHHC
Confidence 46888999988865 47999999988 99999999999998764
No 75
>smart00426 TEA TEA domain.
Probab=62.82 E-value=23 Score=25.70 Aligned_cols=46 Identities=20% Similarity=0.310 Sum_probs=32.6
Q ss_pred CCCCCHHHHHHHHHHHHhCCC-CCC-----------cchhhHHHHc----CCCCCHHHHHHH
Q 047185 57 EKEWNEEDIEILKKQMVKNPV-GKP-----------KRWEVIAEAF----NGRHRVESVIKK 102 (214)
Q Consensus 57 ~~~WT~EE~~lL~kav~kyP~-Gt~-----------~RWe~IA~~l----g~~RT~~qc~~k 102 (214)
..-|.++=-..|..|+..||+ |+. .|=+.|++|+ |..||.+||.-+
T Consensus 3 ~~vWp~~lE~Af~~aL~~~~~~g~~kik~~~r~k~~gRNelIs~YI~~~tGk~Rt~KQVsSh 64 (68)
T smart00426 3 EGVWSPDIEQAFQEALAIYPPCGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSH 64 (68)
T ss_pred CCcCcHHHHHHHHHHHHHcCccCcccchhhhcCcccchhHHHHHHHHHHhCCccchhhhcch
Confidence 457998866778888888886 432 2456777777 456888888654
No 76
>smart00501 BRIGHT BRIGHT, ARID (A/T-rich interaction domain) domain. DNA-binding domain containing a helix-turn-helix structure
Probab=59.26 E-value=41 Score=24.72 Aligned_cols=43 Identities=21% Similarity=0.227 Sum_probs=28.2
Q ss_pred HHHHHHHHHHhCCCC----CCcchhhHHHHcCCCCC----HHHHHHHHHHh
Q 047185 64 DIEILKKQMVKNPVG----KPKRWEVIAEAFNGRHR----VESVIKKAKEL 106 (214)
Q Consensus 64 E~~lL~kav~kyP~G----t~~RWe~IA~~lg~~RT----~~qc~~k~k~l 106 (214)
++-.|-.+|.+++|- ..+.|..||..||-.-+ ..++...|..+
T Consensus 33 dL~~Ly~~V~~~GG~~~v~~~~~W~~Va~~lg~~~~~~~~~~~lk~~Y~k~ 83 (93)
T smart00501 33 DLYRLYRLVQERGGYDQVTKDKKWKEIARELGIPDTSTSAASSLRKHYERY 83 (93)
T ss_pred cHHHHHHHHHHccCHHHHcCCCCHHHHHHHhCCCcccchHHHHHHHHHHHH
Confidence 677888899998531 23689999999984332 33444444443
No 77
>PF01285 TEA: TEA/ATTS domain family; InterPro: IPR000818 Transcriptional enhancer activators are nuclear proteins that contain a TEA/ATTSdomain, a DNA-binding region of 66-68 amino acids. The TEA/ATTS domain is found in the N-termini of certain gene regulatory proteins, such as the Simian virus 40 (SV40) enhancer factor TEF-1, yeast trans-acting factor TEC-1 (which is required for TY1 enhancer activity), and the Aspergillus abaA regulatory gene product. SV40 and retroviral enhancers, and those to which TEF-1, TEC-1 and abaA proteins bind, contain GT-IIC sites: the TEA/ATTS domain may therefore recognise and bind such sites. Secondary structure predictions suggest the presence of 3 helices, but have not confirmed the presence of the helix-turn-helix motif characteristic of many DNA-binding proteins: DNA-binding may therefore be effected by a different mechanism [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3L15_B 2HZD_A 3KYS_A 3JUA_C 4EAZ_B.
Probab=57.47 E-value=19 Score=34.56 Aligned_cols=52 Identities=17% Similarity=0.286 Sum_probs=34.5
Q ss_pred cCCCCCCHHHHHHHHHHHHhCCC-CC---------CcchhhHHHHc----CCCCCHHHHHHHHHHh
Q 047185 55 EEEKEWNEEDIEILKKQMVKNPV-GK---------PKRWEVIAEAF----NGRHRVESVIKKAKEL 106 (214)
Q Consensus 55 ~~~~~WT~EE~~lL~kav~kyP~-Gt---------~~RWe~IA~~l----g~~RT~~qc~~k~k~l 106 (214)
...+.|+++=-..|..|+..||+ |+ .+|=+.||.|| |..||.+||.-+-+-|
T Consensus 47 ~~~~vw~~~~e~af~~al~~~~~~g~~k~~~~~~~~grn~li~~yi~~~tg~~rt~kqvsshiqvl 112 (431)
T PF01285_consen 47 DGEGVWPPDIEQAFQEALAIYPPCGRRKLSDEGKMYGRNELISDYIKLKTGKTRTRKQVSSHIQVL 112 (431)
T ss_dssp GGS--S-HHHHHHHHHHHHHS-SSS---HHHH-----THHHHHHHHHHHHS----SHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHhCCCCCCcccccccccccchhHHHHHHHHHhCcccchhHHHHHHHHH
Confidence 45678999988889999999987 33 25667899988 6689999999998877
No 78
>PF11626 Rap1_C: TRF2-interacting telomeric protein/Rap1 - C terminal domain; InterPro: IPR021661 This family of proteins represents the C-terminal domain of the protein Rap-1, which plays a distinct role in silencing at the silent mating-type loci and telomeres []. The Rap-1 C terminus adopts an all-helical fold. Rap1 carries out its function by recruiting the Sir3 and Sir4 proteins to chromatin via its C-terminal domain []. ; PDB: 3K6G_C 3CZ6_A 3OWT_A.
Probab=52.69 E-value=7.3 Score=28.84 Aligned_cols=43 Identities=19% Similarity=0.152 Sum_probs=20.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHhCCCCCCCcHHHHHhhCCCCCHHHHHHHHHHHH
Q 047185 150 GGGGGVWNAGEDIALLNALKAFPKDVPLRWEKIAAAVPGRSKAACMKRFSDLK 202 (214)
Q Consensus 150 ~~~~~~WT~eED~~L~~al~~~p~~~~~rW~kIA~~vPGRT~~qc~~Ry~~L~ 202 (214)
....+-||+++|..|...-. ...+.-+.. .....|..|++.|.
T Consensus 44 ~n~~GiWT~eDD~~L~~~~~------~~~~~L~~k----hG~~~i~~R~~FL~ 86 (87)
T PF11626_consen 44 DNMPGIWTPEDDEMLRSGDK------DDIERLIKK----HGEERIERRKEFLE 86 (87)
T ss_dssp TT-TT---HHHHHHHTS--H------HHHHHHHHH----H-HHHHHHHHHHHT
T ss_pred CCCCCCcCHHHHHHHHcCCH------HHHHHHHHH----hCHHHHHHHHHHHh
Confidence 34578999999999954310 012222222 24666777776663
No 79
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=50.30 E-value=33 Score=36.51 Aligned_cols=47 Identities=15% Similarity=0.271 Sum_probs=40.4
Q ss_pred CCCCCCCCHHHHHHHHHHHHhCCCCCCCcHHHHHhhCCCCCHHHHHHHHH
Q 047185 150 GGGGGVWNAGEDIALLNALKAFPKDVPLRWEKIAAAVPGRSKAACMKRFS 199 (214)
Q Consensus 150 ~~~~~~WT~eED~~L~~al~~~p~~~~~rW~kIA~~vPGRT~~qc~~Ry~ 199 (214)
......||.-+=..|..|+.+|+. +.-..||..|.|||..+|+...+
T Consensus 821 ~~gf~~w~~~~f~~f~~~~~~~gr---~~~~~i~~~~~~k~~~ev~~y~~ 867 (1033)
T PLN03142 821 EEGFSTWSRRDFNAFIRACEKYGR---NDIKSIASEMEGKTEEEVERYAK 867 (1033)
T ss_pred hcCcCcccHHHHHHHHHHHHHhCH---hHHHHHHHHhcCCCHHHHHHHHH
Confidence 345678999999999999999975 68999999999999999985443
No 80
>KOG4329 consensus DNA-binding protein [General function prediction only]
Probab=48.18 E-value=51 Score=31.47 Aligned_cols=71 Identities=15% Similarity=0.254 Sum_probs=51.7
Q ss_pred hhhHhhhhhc----cCCCCCCHHHHHHHHHHHHhCCCCCCcchhhHHHHcCCCCCHHHHHHHHHHhhhcccCCchhHHHH
Q 047185 45 EKVEVLQRKS----EEEKEWNEEDIEILKKQMVKNPVGKPKRWEVIAEAFNGRHRVESVIKKAKELGEKKIDDSDSYNQF 120 (214)
Q Consensus 45 ~~~~~~~~~~----~~~~~WT~EE~~lL~kav~kyP~Gt~~RWe~IA~~lg~~RT~~qc~~k~k~l~~~~~~~~~~~~~~ 120 (214)
+.+|.|--+| .....||++|-..+...++.|+ . ..-+|-..--.+|++-+|++.|-..+. +..|+.|
T Consensus 261 eAlrr~rfnvk~~rd~l~~wsEeEcr~FEegl~~yG--K--DF~lIr~nkvrtRsvgElVeyYYlWKk-----Seryd~~ 331 (445)
T KOG4329|consen 261 EALRRLRFNVKTVRDDLSGWSEEECRNFEEGLELYG--K--DFHLIRANKVRTRSVGELVEYYYLWKK-----SERYDVF 331 (445)
T ss_pred HHHHhcCCcceecccccccCCHHHHHHHHHHHHHhc--c--cHHHHHhcccccchHHHHHHHHHHhhc-----CcchhhH
Confidence 3444444445 4667899999999999999994 3 688887644448999999998866544 4567777
Q ss_pred hhhh
Q 047185 121 LKNR 124 (214)
Q Consensus 121 l~~~ 124 (214)
-++.
T Consensus 332 ~qqt 335 (445)
T KOG4329|consen 332 AQQT 335 (445)
T ss_pred hhhc
Confidence 6544
No 81
>KOG3554 consensus Histone deacetylase complex, MTA1 component [Chromatin structure and dynamics]
Probab=46.63 E-value=27 Score=34.27 Aligned_cols=46 Identities=20% Similarity=0.284 Sum_probs=37.9
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCCCCcHHHHH-hhCCCCCHHHHHHHHHHH
Q 047185 152 GGGVWNAGEDIALLNALKAFPKDVPLRWEKIA-AAVPGRSKAACMKRFSDL 201 (214)
Q Consensus 152 ~~~~WT~eED~~L~~al~~~p~~~~~rW~kIA-~~vPGRT~~qc~~Ry~~L 201 (214)
....||..|-.+|++||.+|++ ....|. .++|=||-..+.+.|-..
T Consensus 284 emEEWSasEanLFEeALeKyGK----DFndIrqdfLPWKSl~sIveyYYmw 330 (693)
T KOG3554|consen 284 EMEEWSASEANLFEEALEKYGK----DFNDIRQDFLPWKSLTSIVEYYYMW 330 (693)
T ss_pred hhhhccchhhHHHHHHHHHhcc----cHHHHHHhhcchHHHHHHHHHHHHH
Confidence 3468999999999999999976 566665 689999999998887543
No 82
>COG1522 Lrp Transcriptional regulators [Transcription]
Probab=43.23 E-value=54 Score=25.62 Aligned_cols=41 Identities=22% Similarity=0.331 Sum_probs=33.0
Q ss_pred HHHHHHHHHHhCCCCCCCcHHHHHhhCCCCCHHHHHHHHHHHHHH
Q 047185 160 EDIALLNALKAFPKDVPLRWEKIAAAVPGRSKAACMKRFSDLKRD 204 (214)
Q Consensus 160 ED~~L~~al~~~p~~~~~rW~kIA~~vPGRT~~qc~~Ry~~L~~~ 204 (214)
=|..++..|..-+ ...+..||..| |-|...|.+|.+.|.+.
T Consensus 9 ~D~~IL~~L~~d~---r~~~~eia~~l-glS~~~v~~Ri~~L~~~ 49 (154)
T COG1522 9 IDRRILRLLQEDA---RISNAELAERV-GLSPSTVLRRIKRLEEE 49 (154)
T ss_pred HHHHHHHHHHHhC---CCCHHHHHHHH-CCCHHHHHHHHHHHHHC
Confidence 3666777776653 47899999988 99999999999998764
No 83
>PF07750 GcrA: GcrA cell cycle regulator; InterPro: IPR011681 GcrA, together with CtrA (see IPR001789 from INTERPRO and IPR001867 from INTERPRO), form a master cell cycle regulator. These bacterial regulators are involved in controlling the progression and asymmetric polar morphogenesis []. During this process, there are temporal and spatial variations in the concentrations of GcrA and CtrA. The variation in concentration produces time and space dependent transcriptional regulation of modular functions that implement cell-cycle processes []. More specifically, GcrA acts as an activator of components of the replisome and the segregation machinery [].
Probab=43.23 E-value=35 Score=28.36 Aligned_cols=42 Identities=21% Similarity=0.241 Sum_probs=36.2
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCCcHHHHHhhCCCCCHHHHHHHHHHH
Q 047185 155 VWNAGEDIALLNALKAFPKDVPLRWEKIAAAVPGRSKAACMKRFSDL 201 (214)
Q Consensus 155 ~WT~eED~~L~~al~~~p~~~~~rW~kIA~~vPGRT~~qc~~Ry~~L 201 (214)
.||.|....|..+... |..=.+||..|.|.|.+.++-+.+.|
T Consensus 2 ~Wtde~~~~L~~lw~~-----G~SasqIA~~lg~vsRnAViGk~hRl 43 (162)
T PF07750_consen 2 SWTDERVERLRKLWAE-----GLSASQIARQLGGVSRNAVIGKAHRL 43 (162)
T ss_pred CCCHHHHHHHHHHHHc-----CCCHHHHHHHhCCcchhhhhhhhhcc
Confidence 5999999999888755 46779999999889999999888776
No 84
>KOG3841 consensus TEF-1 and related transcription factor, TEAD family [Transcription]
Probab=42.04 E-value=73 Score=30.51 Aligned_cols=53 Identities=25% Similarity=0.331 Sum_probs=42.5
Q ss_pred CCCCCCCHHHHHHHHHHHHhCCCCC---------C---CcHHHHHhhCC-----CCCHHHHHHHHHHHHH
Q 047185 151 GGGGVWNAGEDIALLNALKAFPKDV---------P---LRWEKIAAAVP-----GRSKAACMKRFSDLKR 203 (214)
Q Consensus 151 ~~~~~WT~eED~~L~~al~~~p~~~---------~---~rW~kIA~~vP-----GRT~~qc~~Ry~~L~~ 203 (214)
...+.||++=+..|.+||..||.-+ + .|=+.||..+- .||.+|+-.|...|.+
T Consensus 74 daegvWSpdIEqsFqEALaiyppcGrrKIilsdegkmyGRNELIarYIKlrtgktRTrKQVSSHIQVlar 143 (455)
T KOG3841|consen 74 DAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLAR 143 (455)
T ss_pred ccccccChhHHHHHHHHHhhcCCCCceeEEEccCccccchHHHHHHHHHHhcCCchhHHHHHHHHHHHHH
Confidence 5678999999999999999999832 1 46688886653 6889999999987753
No 85
>PF01285 TEA: TEA/ATTS domain family; InterPro: IPR000818 Transcriptional enhancer activators are nuclear proteins that contain a TEA/ATTSdomain, a DNA-binding region of 66-68 amino acids. The TEA/ATTS domain is found in the N-termini of certain gene regulatory proteins, such as the Simian virus 40 (SV40) enhancer factor TEF-1, yeast trans-acting factor TEC-1 (which is required for TY1 enhancer activity), and the Aspergillus abaA regulatory gene product. SV40 and retroviral enhancers, and those to which TEF-1, TEC-1 and abaA proteins bind, contain GT-IIC sites: the TEA/ATTS domain may therefore recognise and bind such sites. Secondary structure predictions suggest the presence of 3 helices, but have not confirmed the presence of the helix-turn-helix motif characteristic of many DNA-binding proteins: DNA-binding may therefore be effected by a different mechanism [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3L15_B 2HZD_A 3KYS_A 3JUA_C 4EAZ_B.
Probab=41.78 E-value=25 Score=33.74 Aligned_cols=52 Identities=27% Similarity=0.400 Sum_probs=32.6
Q ss_pred CCCCCCCCHHHHHHHHHHHHhCCCCCCC----------cHHHHHhhCC-----CCCHHHHHHHHHHH
Q 047185 150 GGGGGVWNAGEDIALLNALKAFPKDVPL----------RWEKIAAAVP-----GRSKAACMKRFSDL 201 (214)
Q Consensus 150 ~~~~~~WT~eED~~L~~al~~~p~~~~~----------rW~kIA~~vP-----GRT~~qc~~Ry~~L 201 (214)
....+-|+++=+.+|.+||..||..+-. |=+-|+..+- .||.+||-.|...|
T Consensus 46 ~~~~~vw~~~~e~af~~al~~~~~~g~~k~~~~~~~~grn~li~~yi~~~tg~~rt~kqvsshiqvl 112 (431)
T PF01285_consen 46 GDGEGVWPPDIEQAFQEALAIYPPCGRRKLSDEGKMYGRNELISDYIKLKTGKTRTRKQVSSHIQVL 112 (431)
T ss_dssp GGGS--S-HHHHHHHHHHHHHS-SSS---HHHH-----THHHHHHHHHHHHS----SHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHhCCCCCCcccccccccccchhHHHHHHHHHhCcccchhHHHHHHHHH
Confidence 3567899999999999999999985322 2245554432 47888888888888
No 86
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=40.61 E-value=1.5e+02 Score=31.25 Aligned_cols=141 Identities=16% Similarity=0.158 Sum_probs=82.2
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCCCcchhhHHHHcCCCCCHHHHHHHHHHhhhcccCCchhHHHHhhhhcccchhhh---
Q 047185 56 EEKEWNEEDIEILKKQMVKNPVGKPKRWEVIAEAFNGRHRVESVIKKAKELGEKKIDDSDSYNQFLKNRKAIDMRVV--- 132 (214)
Q Consensus 56 ~~~~WT~EE~~lL~kav~kyP~Gt~~RWe~IA~~lg~~RT~~qc~~k~k~l~~~~~~~~~~~~~~l~~~~~l~~r~~--- 132 (214)
.-..||+-|-..++++..||+. +.=+.||..|- + |+++|....+-+.+.- ....++.+++.+......+..
T Consensus 794 gft~w~k~df~~fi~a~eKygr---~di~~ia~~~e-~-~~eev~~y~rvfwer~-~el~d~ek~~~~ie~~e~~i~r~~ 867 (971)
T KOG0385|consen 794 GFTNWTKRDFNQFIKANEKYGR---DDIENIAAEVE-G-TPEEVGEYARVFWERL-EELSDIEKIIYQIERGEKRIQRGD 867 (971)
T ss_pred cccchhhhhHHHHHHHhhccCc---chhhhhHHhhc-C-CHHHHHHHHHHHHHHH-HHhhhhHHHHHHHhhhHhhhhHHH
Confidence 4456999999999999999964 45689999997 3 9999987665322110 001122222222110000000
Q ss_pred ----hcccccccccccccc---cCCCCCCCCCHHHHHHHHHHHHhCCCCCCCcHHHHHhh------------CCCCCHHH
Q 047185 133 ----QENCEDSKKESQENV---VVGGGGGVWNAGEDIALLNALKAFPKDVPLRWEKIAAA------------VPGRSKAA 193 (214)
Q Consensus 133 ----~~~~~~~~s~~~~~~---~~~~~~~~WT~eED~~L~~al~~~p~~~~~rW~kIA~~------------vPGRT~~q 193 (214)
......+...++... .+..+....|.+||..|+.+|.+++-+..+.|+.+... +-.||..+
T Consensus 868 ~~~~~ld~k~~~~k~p~~l~i~~~~nk~~~ys~~edrfL~~~l~K~g~~~~~~~e~lr~~~~~~~~frfdw~~~sRt~~e 947 (971)
T KOG0385|consen 868 SIKKALDDKIARYKAPHQLRIQYGTNKGKNYSEEEDRFLECMLHKLGFDAENVYEELRQPIRNSPQFRFDWFIKSRTAME 947 (971)
T ss_pred HHHHHHhhhHhhhcCchheeeeeccccCCCCchhhHHHHHHHHHHhccCchhHHHHHHHHHhcCcccccceeeehhhHHH
Confidence 000000000000000 02237889999999999999999987766777766543 33577777
Q ss_pred HHHHHHHHH
Q 047185 194 CMKRFSDLK 202 (214)
Q Consensus 194 c~~Ry~~L~ 202 (214)
...||..|.
T Consensus 948 l~Rr~ntli 956 (971)
T KOG0385|consen 948 LQRRCNTLI 956 (971)
T ss_pred HHhcCCeeE
Confidence 777776543
No 87
>PF08281 Sigma70_r4_2: Sigma-70, region 4; InterPro: IPR013249 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors are involved in binding to the -35 promoter element via a helix-turn-helix motif [].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2LFW_A 1OR7_B 2H27_D 2O8X_B.
Probab=37.52 E-value=1.1e+02 Score=19.63 Aligned_cols=27 Identities=19% Similarity=0.429 Sum_probs=19.6
Q ss_pred CCcHHHHHhhCCCCCHHHHHHHHHHHHH
Q 047185 176 PLRWEKIAAAVPGRSKAACMKRFSDLKR 203 (214)
Q Consensus 176 ~~rW~kIA~~vPGRT~~qc~~Ry~~L~~ 203 (214)
+..|..||..+ |.|...|+.++...+.
T Consensus 26 g~s~~eIa~~l-~~s~~~v~~~l~ra~~ 52 (54)
T PF08281_consen 26 GMSYAEIAEIL-GISESTVKRRLRRARK 52 (54)
T ss_dssp ---HHHHHHHC-TS-HHHHHHHHHHHHH
T ss_pred CcCHHHHHHHH-CcCHHHHHHHHHHHHh
Confidence 47999999988 9999999999876543
No 88
>smart00344 HTH_ASNC helix_turn_helix ASNC type. AsnC: an autogenously regulated activator of asparagine synthetase A transcription in Escherichia coli
Probab=36.56 E-value=1.1e+02 Score=22.42 Aligned_cols=42 Identities=21% Similarity=0.296 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHhCCCCCCCcHHHHHhhCCCCCHHHHHHHHHHHHHH
Q 047185 159 GEDIALLNALKAFPKDVPLRWEKIAAAVPGRSKAACMKRFSDLKRD 204 (214)
Q Consensus 159 eED~~L~~al~~~p~~~~~rW~kIA~~vPGRT~~qc~~Ry~~L~~~ 204 (214)
+.|..+..+|...+ ...+..||..+ |-+...|..|++.|.+.
T Consensus 3 ~~D~~il~~L~~~~---~~~~~~la~~l-~~s~~tv~~~l~~L~~~ 44 (108)
T smart00344 3 EIDRKILEELQKDA---RISLAELAKKV-GLSPSTVHNRVKRLEEE 44 (108)
T ss_pred HHHHHHHHHHHHhC---CCCHHHHHHHH-CcCHHHHHHHHHHHHHC
Confidence 46788888888765 36799999988 99999999999998763
No 89
>PF04504 DUF573: Protein of unknown function, DUF573; InterPro: IPR007592 This is a family of uncharacterised proteins.
Probab=36.45 E-value=93 Score=23.59 Aligned_cols=52 Identities=12% Similarity=0.190 Sum_probs=33.1
Q ss_pred CCCCCHHHHHHHHHHHHhC----CCCCCcchhhHHHHc----CCCCCHHHHHHHHHHhhh
Q 047185 57 EKEWNEEDIEILKKQMVKN----PVGKPKRWEVIAEAF----NGRHRVESVIKKAKELGE 108 (214)
Q Consensus 57 ~~~WT~EE~~lL~kav~ky----P~Gt~~RWe~IA~~l----g~~RT~~qc~~k~k~l~~ 108 (214)
.+.||+||-..|.++|.-| +.+....|....+++ ...-|..|+..+.+.|+.
T Consensus 4 qR~WS~eDEi~iL~gl~~~~~~~G~~p~~d~~~f~~~vk~~l~~~~s~~Ql~~KirrLK~ 63 (98)
T PF04504_consen 4 QRLWSEEDEIVILQGLIDFRAKTGKSPQPDMNAFYDFVKGSLSFDVSKNQLYDKIRRLKK 63 (98)
T ss_pred cCCCCchHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHccCCCCHHHHHHHHHHHHH
Confidence 3579999555555666555 322234565555554 445688999999988864
No 90
>PF13404 HTH_AsnC-type: AsnC-type helix-turn-helix domain; PDB: 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2VC1_B 2QZ8_A 2W29_C 2IVM_B 2VBX_B ....
Probab=35.54 E-value=1.2e+02 Score=19.37 Aligned_cols=38 Identities=11% Similarity=0.216 Sum_probs=27.0
Q ss_pred HHHHHHHHHHhCCCCCCcchhhHHHHcCCCCCHHHHHHHHHHh
Q 047185 64 DIEILKKQMVKNPVGKPKRWEVIAEAFNGRHRVESVIKKAKEL 106 (214)
Q Consensus 64 E~~lL~kav~kyP~Gt~~RWe~IA~~lg~~RT~~qc~~k~k~l 106 (214)
=|..|..+++.-+ . .-|..||+.+| =|...|..+.+.|
T Consensus 4 ~D~~Il~~Lq~d~--r-~s~~~la~~lg--lS~~~v~~Ri~rL 41 (42)
T PF13404_consen 4 LDRKILRLLQEDG--R-RSYAELAEELG--LSESTVRRRIRRL 41 (42)
T ss_dssp HHHHHHHHHHH-T--T-S-HHHHHHHHT--S-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC--C-ccHHHHHHHHC--cCHHHHHHHHHHh
Confidence 3556667777763 2 35999999998 8899999998765
No 91
>PF05263 DUF722: Protein of unknown function (DUF722); InterPro: IPR007927 This entry is represented by Bacteriophage bIL285, Orf38. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=34.76 E-value=1.1e+02 Score=24.75 Aligned_cols=50 Identities=14% Similarity=0.078 Sum_probs=36.8
Q ss_pred CCCCHHHHHHHHHHHHhCCCCCCCcHHHHHhhCCCCCHHHHHHHHHHHHHHHhc
Q 047185 154 GVWNAGEDIALLNALKAFPKDVPLRWEKIAAAVPGRSKAACMKRFSDLKRDFRS 207 (214)
Q Consensus 154 ~~WT~eED~~L~~al~~~p~~~~~rW~kIA~~vPGRT~~qc~~Ry~~L~~~v~~ 207 (214)
..++.++.++|..-+... .+.-|..||..+ ..+-.+|+..+...+.+|..
T Consensus 80 ~~l~de~k~Ii~lry~~r---~~~TW~~IA~~l-~i~erta~r~~~~fK~~i~~ 129 (130)
T PF05263_consen 80 ETLIDEEKRIIKLRYDRR---SRRTWYQIAQKL-HISERTARRWRDRFKNDIYR 129 (130)
T ss_pred HhhCHHHHHHHHHHHccc---ccchHHHHHHHh-CccHHHHHHHHHHHHHHhcC
Confidence 355666666665444443 357899999877 69999999999888887754
No 92
>KOG2009 consensus Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]
Probab=33.82 E-value=41 Score=33.61 Aligned_cols=47 Identities=19% Similarity=0.237 Sum_probs=41.9
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhCCCCCCCcHHHHHhhCCCCCHHHHHHHHH
Q 047185 149 VGGGGGVWNAGEDIALLNALKAFPKDVPLRWEKIAAAVPGRSKAACMKRFS 199 (214)
Q Consensus 149 ~~~~~~~WT~eED~~L~~al~~~p~~~~~rW~kIA~~vPGRT~~qc~~Ry~ 199 (214)
.......||.++=.+|..++..++ ..-.-|+..+|+|+.+|++..|.
T Consensus 405 k~~~~~~w~~se~e~fyka~~~~g----s~~slis~l~p~R~rk~iK~K~~ 451 (584)
T KOG2009|consen 405 KKLETDKWDASETELFYKALSERG----SDFSLISNLFPLRDRKQIKAKFK 451 (584)
T ss_pred CccccCcccchhhHHhhhHHhhhc----ccccccccccccccHHHHHHHHh
Confidence 345678999999999999999995 68899999999999999999884
No 93
>PF04545 Sigma70_r4: Sigma-70, region 4; InterPro: IPR007630 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors is involved in binding to the -35 promoter element via a helix-turn-helix motif []. Due to the way Pfam works, the threshold has been set artificially high to prevent overlaps with other helix-turn-helix families. Therefore there are many false negatives.; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2P7V_B 3IYD_F 1TLH_B 1KU7_A 1RIO_H 3N97_A 1KU3_A 1RP3_C 1SC5_A 1NR3_A ....
Probab=32.35 E-value=1.4e+02 Score=19.07 Aligned_cols=44 Identities=20% Similarity=0.261 Sum_probs=31.6
Q ss_pred CHHHHHHHHHHHHhCCCCCCCcHHHHHhhCCCCCHHHHHHHHHHHHHHHh
Q 047185 157 NAGEDIALLNALKAFPKDVPLRWEKIAAAVPGRSKAACMKRFSDLKRDFR 206 (214)
Q Consensus 157 T~eED~~L~~al~~~p~~~~~rW~kIA~~vPGRT~~qc~~Ry~~L~~~v~ 206 (214)
++.|...|..-+ |. +..+..||..+ |-|...|+.+.+.....++
T Consensus 6 ~~~er~vi~~~y--~~---~~t~~eIa~~l-g~s~~~V~~~~~~al~kLR 49 (50)
T PF04545_consen 6 PPREREVIRLRY--FE---GLTLEEIAERL-GISRSTVRRILKRALKKLR 49 (50)
T ss_dssp -HHHHHHHHHHH--TS---T-SHHHHHHHH-TSCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHh--cC---CCCHHHHHHHH-CCcHHHHHHHHHHHHHHhc
Confidence 455666666555 32 47899999988 9999999999988766654
No 94
>PF06461 DUF1086: Domain of Unknown Function (DUF1086); InterPro: IPR009462 This entry represents several eukaryotic domains of unknown function, which are present in chromodomain helicase DNA binding proteins. This domain is often found in conjunction with IPR000330 from INTERPRO, IPR001650 from INTERPRO, IPR009463 from INTERPRO, IPR000953 from INTERPRO and IPR001965 from INTERPRO.
Probab=31.13 E-value=1.7e+02 Score=24.23 Aligned_cols=48 Identities=19% Similarity=0.161 Sum_probs=39.7
Q ss_pred CCCCCCCHHHHHHHHHHHHhCCCCCCCcHHHHHhhCCCCCHHHHHHHHH
Q 047185 151 GGGGVWNAGEDIALLNALKAFPKDVPLRWEKIAAAVPGRSKAACMKRFS 199 (214)
Q Consensus 151 ~~~~~WT~eED~~L~~al~~~p~~~~~rW~kIA~~vPGRT~~qc~~Ry~ 199 (214)
+..-.+++-|-++|.+++..|+- ..-.|.-+...+.+||..+++..-.
T Consensus 36 l~VlGFn~rQR~~Fln~vMR~G~-~~f~~~w~~~~Lr~Ks~~ei~aY~~ 83 (145)
T PF06461_consen 36 LEVLGFNPRQRKAFLNAVMRYGM-GAFDWKWFVPRLRGKSEKEIRAYGS 83 (145)
T ss_pred eEEeccCHHHHHHHHHHHHHHCc-CcccchHHhhhhccccHHHHHHHHH
Confidence 45568999999999999999987 3457888888999999998877543
No 95
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=31.10 E-value=44 Score=30.83 Aligned_cols=51 Identities=24% Similarity=0.354 Sum_probs=39.8
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCC-CcchhhHHHHcCC----CCCHHHHHHHHHHh
Q 047185 56 EEKEWNEEDIEILKKQMVKNPVGK-PKRWEVIAEAFNG----RHRVESVIKKAKEL 106 (214)
Q Consensus 56 ~~~~WT~EE~~lL~kav~kyP~Gt-~~RWe~IA~~lg~----~RT~~qc~~k~k~l 106 (214)
..+.|+.|+-.+|..+...+.... .++|+-+|+.+-+ .|.++++.++++.+
T Consensus 244 ~~rkWereagar~~a~aa~k~kae~k~kae~ea~a~asa~a~kkkaKE~~kka~k~ 299 (379)
T COG5269 244 KIRKWEREAGARLKALAALKGKAEAKNKAEIEAEALASATAVKKKAKEVMKKALKM 299 (379)
T ss_pred HHhccchhhhhhHHHHHHHhhhhHHHhHHHHHHHHhhhhHHHHHhHHHHHHHHHHH
Confidence 457899999999999888775433 5799999998752 46777888777665
No 96
>PF13325 MCRS_N: N-terminal region of micro-spherule protein
Probab=30.57 E-value=1.1e+02 Score=26.55 Aligned_cols=53 Identities=6% Similarity=0.120 Sum_probs=40.5
Q ss_pred cCCCCCCHHHHHHHHHHHHhCCCCCCcchhhHHHHcC----CCCCHHHHHHHHHHhhh
Q 047185 55 EEEKEWNEEDIEILKKQMVKNPVGKPKRWEVIAEAFN----GRHRVESVIKKAKELGE 108 (214)
Q Consensus 55 ~~~~~WT~EE~~lL~kav~kyP~Gt~~RWe~IA~~lg----~~RT~~qc~~k~k~l~~ 108 (214)
..+.+||.+|.++|........ .+...++.|=..-. ..||+++...+|+.|+.
T Consensus 71 q~kalfS~~EE~lL~~v~s~~~-p~le~Fq~LL~~n~~vFh~sRTak~L~~HW~lmkq 127 (199)
T PF13325_consen 71 QSKALFSKEEEQLLGTVASSSQ-PSLETFQELLDKNRSVFHPSRTAKSLQDHWRLMKQ 127 (199)
T ss_pred cccCCCCHHHHHHHHhhhhccC-CcHHHHHHHHHhChhhhccccCHHHHHHHHHHHHH
Confidence 5778999999999999776653 34567888765322 36999999999998743
No 97
>PRK04387 hypothetical protein; Provisional
Probab=29.54 E-value=1.3e+02 Score=22.94 Aligned_cols=40 Identities=13% Similarity=0.372 Sum_probs=31.1
Q ss_pred CCCCHHHHHHHHHHHHhCCCCCCcchhhHHHHcCCCCCHHHHHHHHHHhhh
Q 047185 58 KEWNEEDIEILKKQMVKNPVGKPKRWEVIAEAFNGRHRVESVIKKAKELGE 108 (214)
Q Consensus 58 ~~WT~EE~~lL~kav~kyP~Gt~~RWe~IA~~lg~~RT~~qc~~k~k~l~~ 108 (214)
-.||.||+..++.. |+.|..+.-.+=..++++..|+.++.
T Consensus 9 ~dWsteEii~Vi~F-----------~~~VE~aYE~gv~re~ll~~Y~~FK~ 48 (90)
T PRK04387 9 LDWSTEEMISVLHF-----------FNAVEKAYEKGVDAEELLDAYRRFKE 48 (90)
T ss_pred CCCCHHHHHHHHHH-----------HHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 46999999877654 77788877667888999988887654
No 98
>PF05256 UPF0223: Uncharacterised protein family (UPF0223); InterPro: IPR007920 This family of proteins is functionally uncharacterised.; PDB: 2OY9_B.
Probab=29.34 E-value=98 Score=23.47 Aligned_cols=40 Identities=13% Similarity=0.345 Sum_probs=27.7
Q ss_pred CCCCHHHHHHHHHHHHhCCCCCCcchhhHHHHcCCCCCHHHHHHHHHHhhh
Q 047185 58 KEWNEEDIEILKKQMVKNPVGKPKRWEVIAEAFNGRHRVESVIKKAKELGE 108 (214)
Q Consensus 58 ~~WT~EE~~lL~kav~kyP~Gt~~RWe~IA~~lg~~RT~~qc~~k~k~l~~ 108 (214)
..||.||+...... |+.|..+.-.+=..++.+..|+.++.
T Consensus 9 ~dWsteEii~Vi~F-----------~~~VE~AYE~gV~r~~ll~~Y~~FK~ 48 (88)
T PF05256_consen 9 PDWSTEEIIDVINF-----------FNAVEKAYEKGVDREELLDAYRRFKK 48 (88)
T ss_dssp ----HHHHHHHHHH-----------HHHHHHHHTT-EEHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH-----------HHHHHHHHHccCcHHHHHHHHHHHHH
Confidence 35999999877654 77888877667788899988877654
No 99
>PF12451 VPS11_C: Vacuolar protein sorting protein 11 C terminal; InterPro: IPR024763 Vps 11 is one of the evolutionarily conserved class C vacuolar protein sorting genes (c-vps: vps11, vps16, vps18, and vps33), whose products physically associate to form the c-vps protein complex required for vesicle docking and fusion. This entry represents the C-terminal domain of vps11.
Probab=29.18 E-value=50 Score=22.04 Aligned_cols=27 Identities=30% Similarity=0.468 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHhCCCCCCcchhhHHHHcCC
Q 047185 62 EEDIEILKKQMVKNPVGKPKRWEVIAEAFNG 92 (214)
Q Consensus 62 ~EE~~lL~kav~kyP~Gt~~RWe~IA~~lg~ 92 (214)
.+...+|..++. +..++...||+|||.
T Consensus 18 ~~~~d~F~~~L~----~s~D~F~vIaeyfGr 44 (49)
T PF12451_consen 18 ADQHDLFFKQLE----ESEDRFSVIAEYFGR 44 (49)
T ss_pred hhcHHHHHHHHH----hCCCCchhHHHHHcc
Confidence 345677777774 456899999999983
No 100
>KOG1411 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT1/GOT2 [Amino acid transport and metabolism]
Probab=25.69 E-value=96 Score=29.61 Aligned_cols=48 Identities=25% Similarity=0.354 Sum_probs=35.2
Q ss_pred CCCCCHHH----------HHHHHHHHHhCCCCCCcchhhHHHHcC----CCCCHHHHHHHHHHh
Q 047185 57 EKEWNEED----------IEILKKQMVKNPVGKPKRWEVIAEAFN----GRHRVESVIKKAKEL 106 (214)
Q Consensus 57 ~~~WT~EE----------~~lL~kav~kyP~Gt~~RWe~IA~~lg----~~RT~~qc~~k~k~l 106 (214)
...|+.|= -+.|...+.+- |++..|+.|...+| ++-+++||-...++.
T Consensus 331 ~~~W~~evk~MadRi~~mR~~L~d~L~~~--gs~~~W~hI~~QIGMF~fTgl~peQv~~l~ke~ 392 (427)
T KOG1411|consen 331 KNQWLGEVKGMADRIISMRQQLFDALEKE--GSPGNWSHITKQIGMFCFTGLNPEQVDWLTKEY 392 (427)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHhHHhhcC--CCCccHHHHHHhhheeeecCCCHHHHHHHHhhh
Confidence 45687763 23455555554 78889999999998 578999998877664
No 101
>KOG2009 consensus Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]
Probab=25.54 E-value=58 Score=32.59 Aligned_cols=46 Identities=20% Similarity=0.436 Sum_probs=40.3
Q ss_pred cCCCCCCHHHHHHHHHHHHhCCCCCCcchhhHHHHcCCCCCHHHHHHHHHH
Q 047185 55 EEEKEWNEEDIEILKKQMVKNPVGKPKRWEVIAEAFNGRHRVESVIKKAKE 105 (214)
Q Consensus 55 ~~~~~WT~EE~~lL~kav~kyP~Gt~~RWe~IA~~lg~~RT~~qc~~k~k~ 105 (214)
.....||.+|.+++-+++..+ |+ .-..|+..++ .|+.+|+..+++.
T Consensus 407 ~~~~~w~~se~e~fyka~~~~--gs--~~slis~l~p-~R~rk~iK~K~~~ 452 (584)
T KOG2009|consen 407 LETDKWDASETELFYKALSER--GS--DFSLISNLFP-LRDRKQIKAKFKK 452 (584)
T ss_pred cccCcccchhhHHhhhHHhhh--cc--cccccccccc-cccHHHHHHHHhh
Confidence 356789999999999999999 44 5889999999 7999999999864
No 102
>cd08777 Death_RIP1 Death Domain of Receptor-Interacting Protein 1. Death domain (DD) found in Receptor-Interacting Protein 1 (RIP1) and related proteins. RIP kinases serve as essential sensors of cellular stress. Vertebrates contain several types containing a homologous N-terminal kinase domain and varying C-terminal domains. RIP1 harbors a C-terminal DD, which binds death receptors (DRs) including TNF receptor 1, Fas, TNF-related apoptosis-inducing ligand receptor 1 (TRAILR1), and TRAILR2. It also interacts with other DD-containing adaptor proteins such as TRADD and FADD. RIP1 plays a crucial role in determining a cell's fate, between survival or death, following exposure to stress signals. It is important in the signaling of NF-kappaB and MAPKs, and it links DR-associated signaling to reactive oxygen species (ROS) production. Abnormal RIP1 function may result in ROS accumulation affecting inflammatory responses, innate immunity, stress responses, and cell survival. In general, DDs ar
Probab=25.11 E-value=1.2e+02 Score=22.34 Aligned_cols=25 Identities=20% Similarity=0.533 Sum_probs=19.9
Q ss_pred CHHHHHHHHHHHHhCCCCCCcchhhHHHHcCC
Q 047185 61 NEEDIEILKKQMVKNPVGKPKRWEVIAEAFNG 92 (214)
Q Consensus 61 T~EE~~lL~kav~kyP~Gt~~RWe~IA~~lg~ 92 (214)
|++++..|..-+.. +|..+|..||-
T Consensus 1 ~~~~l~~l~~~lG~-------~Wk~lar~LG~ 25 (86)
T cd08777 1 TEKHLDLLRENLGK-------KWKRCARKLGF 25 (86)
T ss_pred CHHHHHHHHHHHHH-------HHHHHHHHcCC
Confidence 67788888876653 69999999983
No 103
>PF01388 ARID: ARID/BRIGHT DNA binding domain; InterPro: IPR001606 Members of the recently discovered ARID (AT-rich interaction domain; also known as BRIGHT domain)) family of DNA-binding proteins are found in fungi and invertebrate and vertebrate metazoans. ARID-encoding genes are involved in a variety of biological processes including embryonic development, cell lineage gene regulation and cell cycle control. Although the specific roles of this domain and of ARID-containing proteins in transcriptional regulation are yet to be elucidated, they include both positive and negative transcriptional regulation and a likely involvement in the modification of chromatin structure []. The basic structure of the ARID domain domain appears to be a series of six alpha-helices separated by beta-strands, loops, or turns, but the structured region may extend to an additional helix at either or both ends of the basic six. Based on primary sequence homology, they can be partitioned into three structural classes: Minimal ARID proteins that consist of a core domain formed by six alpha helices; ARID proteins that supplement the core domain with an N-terminal alpha-helix; and Extended-ARID proteins, which contain the core domain and additional alpha-helices at their N- and C-termini. The human SWI-SNF complex protein p270 is an ARID family member with non-sequence-specific DNA binding activity. The ARID consensus and other structural features are common to both p270 and yeast SWI1, suggesting that p270 is a human counterpart of SWI1 []. The approximately 100-residue ARID sequence is present in a series of proteins strongly implicated in the regulation of cell growth, development, and tissue-specific gene expression. Although about a dozen ARID proteins can be identified from database searches, to date, only Bright (a regulator of B-cell-specific gene expression), dead ringer (a Drosophila melanogaster gene product required for normal development), and MRF-2 (which represses expression from the Cytomegalovirus enhancer) have been analyzed directly in regard to their DNA binding properties. Each binds preferentially to AT-rich sites. In contrast, p270 shows no sequence preference in its DNA binding activity, thereby demonstrating that AT-rich binding is not an intrinsic property of ARID domains and that ARID family proteins may be involved in a wider range of DNA interactions [].; GO: 0003677 DNA binding, 0005622 intracellular; PDB: 1C20_A 1KQQ_A 2JRZ_A 2LM1_A 2YQE_A 2JXJ_A 2EH9_A 2CXY_A 2LI6_A 1KN5_A ....
Probab=25.08 E-value=76 Score=22.98 Aligned_cols=42 Identities=17% Similarity=0.213 Sum_probs=26.8
Q ss_pred HHHHHHHHHHhCCCCC----CcchhhHHHHcCCCCC----HHHHHHHHHH
Q 047185 64 DIEILKKQMVKNPVGK----PKRWEVIAEAFNGRHR----VESVIKKAKE 105 (214)
Q Consensus 64 E~~lL~kav~kyP~Gt----~~RWe~IA~~lg~~RT----~~qc~~k~k~ 105 (214)
|+-.|=.+|.+++|-. ...|..||+.||-..+ +.++...|..
T Consensus 37 DL~~Ly~~V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~~L~~~Y~~ 86 (92)
T PF01388_consen 37 DLYKLYKAVMKRGGFDKVTKNKKWREVARKLGFPPSSTSAAQQLRQHYEK 86 (92)
T ss_dssp SHHHHHHHHHHHTSHHHHHHHTTHHHHHHHTTS-TTSCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHhCcCcccCcccchHHHHHHHhCCCCCCCcHHHHHHHHHHH
Confidence 5677888888885321 2569999999984332 2445555544
No 104
>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]
Probab=24.09 E-value=70 Score=30.47 Aligned_cols=21 Identities=10% Similarity=0.452 Sum_probs=19.0
Q ss_pred CCCCCCHHHHHHHHHHHHhCC
Q 047185 56 EEKEWNEEDIEILKKQMVKNP 76 (214)
Q Consensus 56 ~~~~WT~EE~~lL~kav~kyP 76 (214)
-++-||.||+..|..++.+|.
T Consensus 171 ~Grvwt~eeL~~i~elc~kh~ 191 (388)
T COG1168 171 TGRVWTKEELRKIAELCLRHG 191 (388)
T ss_pred CCccccHHHHHHHHHHHHHcC
Confidence 477899999999999999994
No 105
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a dimerisation domain found at the C-terminal of SKP1 proteins [], as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. This domain is multi-helical in structure, and consists of an interlocked herterodimer in F-box proteins.; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 2P1O_A 3OGL_G 3OGM_A 3C6O_A 2P1N_A 2P1Q_A 3OGK_I 3C6N_A 3C6P_A 2P1P_A ....
Probab=23.97 E-value=1.8e+02 Score=20.74 Aligned_cols=20 Identities=20% Similarity=0.142 Sum_probs=14.0
Q ss_pred hhhHHHHcCCCCCHHHHHHHH
Q 047185 83 WEVIAEAFNGRHRVESVIKKA 103 (214)
Q Consensus 83 We~IA~~lg~~RT~~qc~~k~ 103 (214)
-..||..+. ++|+++++..+
T Consensus 36 ~~~iA~~i~-gks~eeir~~f 55 (78)
T PF01466_consen 36 CKYIANMIK-GKSPEEIRKYF 55 (78)
T ss_dssp HHHHHHHHT-TS-HHHHHHHH
T ss_pred HHHHHHHhc-CCCHHHHHHHc
Confidence 345777777 69999988765
No 106
>PRK11179 DNA-binding transcriptional regulator AsnC; Provisional
Probab=23.61 E-value=1.9e+02 Score=23.01 Aligned_cols=44 Identities=9% Similarity=0.165 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHhCCCCCCcchhhHHHHcCCCCCHHHHHHHHHHhhhccc
Q 047185 63 EDIEILKKQMVKNPVGKPKRWEVIAEAFNGRHRVESVIKKAKELGEKKI 111 (214)
Q Consensus 63 EE~~lL~kav~kyP~Gt~~RWe~IA~~lg~~RT~~qc~~k~k~l~~~~~ 111 (214)
+-|..|..+++.-+ ..-|..||+.+| -|...|..|.+.|.+...
T Consensus 9 ~~D~~Il~~Lq~d~---R~s~~eiA~~lg--lS~~tV~~Ri~rL~~~Gv 52 (153)
T PRK11179 9 NLDRGILEALMENA---RTPYAELAKQFG--VSPGTIHVRVEKMKQAGI 52 (153)
T ss_pred HHHHHHHHHHHHcC---CCCHHHHHHHHC--cCHHHHHHHHHHHHHCCC
Confidence 34556666676663 245999999998 899999999999877653
Done!