Query 047185
Match_columns 214
No_of_seqs 134 out of 939
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 14:52:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047185.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047185hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2k9n_A MYB24; R2R3 domain, DNA 99.9 1.8E-26 6.2E-31 176.9 13.5 103 57-207 1-103 (107)
2 1gv2_A C-MYB, MYB proto-oncoge 99.9 4.4E-26 1.5E-30 173.5 11.8 99 56-202 3-101 (105)
3 3osg_A MYB21; transcription-DN 99.9 1E-25 3.5E-30 177.4 12.9 104 55-207 9-112 (126)
4 1h8a_C AMV V-MYB, MYB transfor 99.9 1.7E-25 5.7E-30 176.2 12.2 113 42-202 8-124 (128)
5 3zqc_A MYB3; transcription-DNA 99.9 6.8E-25 2.3E-29 173.7 10.3 99 57-203 2-100 (131)
6 1h89_C C-MYB, MYB proto-oncoge 99.9 8.9E-24 3.1E-28 171.7 11.7 115 40-202 37-155 (159)
7 1h89_C C-MYB, MYB proto-oncoge 99.9 4E-23 1.4E-27 167.8 6.2 99 56-201 5-103 (159)
8 2cjj_A Radialis; plant develop 99.7 9.3E-18 3.2E-22 126.7 7.7 62 151-212 6-67 (93)
9 2cqr_A RSGI RUH-043, DNAJ homo 99.7 4E-18 1.4E-22 123.4 5.0 58 150-207 15-72 (73)
10 1wgx_A KIAA1903 protein; MYB D 99.6 1E-16 3.5E-21 116.0 4.8 61 151-211 6-66 (73)
11 1h8a_C AMV V-MYB, MYB transfor 99.6 3.7E-16 1.3E-20 122.7 6.4 72 86-201 1-72 (128)
12 2cqq_A RSGI RUH-037, DNAJ homo 99.6 1.1E-15 3.7E-20 110.3 6.6 60 150-211 5-64 (72)
13 2cqq_A RSGI RUH-037, DNAJ homo 99.6 4.3E-15 1.5E-19 107.1 6.9 53 55-109 6-58 (72)
14 2yum_A ZZZ3 protein, zinc fing 99.5 7E-15 2.4E-19 105.7 5.5 57 150-206 5-64 (75)
15 4eef_G F-HB80.4, designed hema 99.5 1.9E-15 6.6E-20 109.1 1.5 49 151-199 18-66 (74)
16 2din_A Cell division cycle 5-l 99.5 2.4E-14 8.2E-19 100.6 7.0 58 150-212 6-63 (66)
17 2dim_A Cell division cycle 5-l 99.5 1.3E-14 4.5E-19 103.1 5.8 48 55-106 7-54 (70)
18 1wgx_A KIAA1903 protein; MYB D 99.5 3.8E-14 1.3E-18 102.5 6.8 52 56-108 7-58 (73)
19 1guu_A C-MYB, MYB proto-oncoge 99.5 5E-14 1.7E-18 94.4 6.5 48 152-202 2-49 (52)
20 1x41_A Transcriptional adaptor 99.5 6E-14 2E-18 97.1 6.6 49 150-201 5-53 (60)
21 2cu7_A KIAA1915 protein; nucle 99.5 9.5E-14 3.3E-18 99.3 7.2 52 149-204 5-56 (72)
22 1gvd_A MYB proto-oncogene prot 99.5 7.2E-14 2.5E-18 93.7 5.6 47 152-201 2-48 (52)
23 2d9a_A B-MYB, MYB-related prot 99.5 1.2E-13 4E-18 95.3 6.7 51 149-202 4-54 (60)
24 2cqr_A RSGI RUH-043, DNAJ homo 99.4 8E-14 2.7E-18 100.7 5.4 53 55-108 16-68 (73)
25 2elk_A SPCC24B10.08C protein; 99.4 2.9E-13 1E-17 93.2 6.8 48 151-201 7-55 (58)
26 1w0t_A Telomeric repeat bindin 99.4 3.2E-13 1.1E-17 91.1 6.7 47 153-202 2-50 (53)
27 2cjj_A Radialis; plant develop 99.4 6.4E-13 2.2E-17 100.1 6.9 52 56-108 7-58 (93)
28 3sjm_A Telomeric repeat-bindin 99.4 7.7E-13 2.6E-17 93.1 6.8 50 151-203 9-60 (64)
29 2yus_A SWI/SNF-related matrix- 99.4 1.4E-13 4.8E-18 100.7 2.9 56 150-209 15-71 (79)
30 2dim_A Cell division cycle 5-l 99.4 9.2E-13 3.2E-17 93.5 7.0 50 149-201 5-54 (70)
31 1ign_A Protein (RAP1); RAP1,ye 99.4 2.8E-12 9.5E-17 111.1 11.3 134 55-205 6-200 (246)
32 1ity_A TRF1; helix-turn-helix, 99.3 1.9E-12 6.6E-17 91.7 7.3 51 150-203 7-59 (69)
33 4eef_G F-HB80.4, designed hema 99.3 1.3E-13 4.4E-18 99.6 1.0 48 56-104 19-66 (74)
34 2llk_A Cyclin-D-binding MYB-li 99.3 7.9E-13 2.7E-17 95.5 5.0 50 150-204 20-69 (73)
35 2yum_A ZZZ3 protein, zinc fing 99.3 3E-12 1E-16 91.9 6.3 52 55-107 6-59 (75)
36 2elk_A SPCC24B10.08C protein; 99.3 1.2E-11 4.1E-16 85.0 7.0 49 55-106 7-55 (58)
37 2ltp_A Nuclear receptor corepr 98.9 5E-13 1.7E-17 99.5 0.0 51 149-203 12-62 (89)
38 1x41_A Transcriptional adaptor 99.2 1.4E-11 4.8E-16 85.1 6.8 49 55-107 6-54 (60)
39 1guu_A C-MYB, MYB proto-oncoge 99.2 1.1E-11 3.8E-16 82.9 5.8 48 56-107 2-49 (52)
40 1gvd_A MYB proto-oncogene prot 99.2 1.3E-11 4.6E-16 82.5 5.5 48 56-107 2-49 (52)
41 2d9a_A B-MYB, MYB-related prot 99.2 2.6E-11 8.9E-16 83.4 6.8 50 55-108 6-55 (60)
42 1gv2_A C-MYB, MYB proto-oncoge 99.2 2.1E-11 7.1E-16 92.2 5.8 48 151-201 2-49 (105)
43 3sjm_A Telomeric repeat-bindin 99.2 3.7E-11 1.3E-15 84.4 6.3 55 51-108 5-60 (64)
44 2yus_A SWI/SNF-related matrix- 99.2 2.3E-11 7.9E-16 88.9 5.4 47 55-106 16-62 (79)
45 2eqr_A N-COR1, N-COR, nuclear 99.1 7.6E-11 2.6E-15 81.8 6.7 46 151-200 10-55 (61)
46 2k9n_A MYB24; R2R3 domain, DNA 99.1 5.2E-11 1.8E-15 90.6 6.2 46 153-201 1-46 (107)
47 3osg_A MYB21; transcription-DN 99.1 6.9E-11 2.4E-15 92.5 6.3 49 150-202 8-56 (126)
48 1w0t_A Telomeric repeat bindin 99.1 1E-10 3.6E-15 78.6 6.2 49 57-108 2-51 (53)
49 2cu7_A KIAA1915 protein; nucle 99.1 1.5E-10 5.3E-15 82.5 6.8 49 55-108 7-55 (72)
50 3zqc_A MYB3; transcription-DNA 99.1 8.3E-11 2.8E-15 92.5 4.6 47 153-202 2-48 (131)
51 1ity_A TRF1; helix-turn-helix, 99.1 2.5E-10 8.5E-15 80.7 6.0 52 55-109 8-60 (69)
52 2din_A Cell division cycle 5-l 99.0 3.7E-10 1.2E-14 79.1 6.1 48 55-108 7-54 (66)
53 2ckx_A NGTRF1, telomere bindin 99.0 4E-10 1.4E-14 83.1 6.5 47 154-203 1-51 (83)
54 2juh_A Telomere binding protei 99.0 6.2E-10 2.1E-14 87.5 5.8 84 55-181 15-103 (121)
55 2roh_A RTBP1, telomere binding 99.0 1.2E-09 4.2E-14 85.9 7.3 79 55-172 29-112 (122)
56 2aje_A Telomere repeat-binding 98.9 2.5E-09 8.4E-14 82.2 6.9 51 150-203 10-64 (105)
57 2llk_A Cyclin-D-binding MYB-li 98.9 2.6E-09 8.7E-14 77.0 5.5 48 55-108 21-68 (73)
58 1ofc_X ISWI protein; nuclear p 98.9 1E-08 3.5E-13 91.7 10.4 147 55-207 108-278 (304)
59 2juh_A Telomere binding protei 98.8 2.8E-09 9.6E-14 83.8 5.1 51 150-203 14-68 (121)
60 1x58_A Hypothetical protein 49 98.8 6.8E-09 2.3E-13 72.7 6.5 49 151-203 6-57 (62)
61 2roh_A RTBP1, telomere binding 98.8 6.3E-09 2.1E-13 81.9 6.6 52 149-203 27-82 (122)
62 2eqr_A N-COR1, N-COR, nuclear 98.8 8.8E-09 3E-13 71.3 6.3 46 56-106 11-56 (61)
63 1ign_A Protein (RAP1); RAP1,ye 98.8 3.1E-09 1.1E-13 92.0 4.8 53 150-202 5-59 (246)
64 2ltp_A Nuclear receptor corepr 98.2 9.5E-10 3.3E-14 81.7 0.0 49 55-108 14-62 (89)
65 2xag_B REST corepressor 1; ami 98.7 1.6E-08 5.5E-13 95.2 5.4 44 153-200 380-423 (482)
66 2ckx_A NGTRF1, telomere bindin 98.6 6.2E-08 2.1E-12 71.3 6.0 47 58-108 1-51 (83)
67 2iw5_B Protein corest, REST co 98.6 4.8E-08 1.6E-12 84.0 5.3 46 151-200 131-176 (235)
68 2yqk_A Arginine-glutamic acid 98.5 1.8E-07 6.1E-12 65.2 6.5 47 149-199 5-52 (63)
69 2aje_A Telomere repeat-binding 98.4 2.7E-07 9.4E-12 70.7 5.4 51 55-108 11-64 (105)
70 2crg_A Metastasis associated p 98.4 8.3E-07 2.8E-11 63.1 6.3 45 151-199 6-51 (70)
71 3hm5_A DNA methyltransferase 1 98.3 1.6E-06 5.4E-11 65.2 7.5 55 152-210 29-88 (93)
72 4a69_C Nuclear receptor corepr 98.3 1E-06 3.4E-11 66.1 6.3 45 152-200 42-86 (94)
73 2y9y_A Imitation switch protei 98.3 4.5E-06 1.5E-10 76.4 11.0 145 56-208 122-295 (374)
74 1x58_A Hypothetical protein 49 98.3 1E-06 3.6E-11 61.5 5.0 49 55-108 6-57 (62)
75 2lr8_A CAsp8-associated protei 97.6 1.2E-07 4.2E-12 67.3 0.0 56 152-209 13-68 (70)
76 1ug2_A 2610100B20RIK gene prod 98.2 2.5E-06 8.4E-11 63.8 6.9 60 151-211 31-90 (95)
77 4a69_C Nuclear receptor corepr 98.1 4.3E-06 1.5E-10 62.7 6.1 45 55-104 41-85 (94)
78 2yqk_A Arginine-glutamic acid 98.1 5.4E-06 1.8E-10 57.6 5.8 44 56-104 8-52 (63)
79 2iw5_B Protein corest, REST co 98.1 3.5E-06 1.2E-10 72.5 5.7 48 56-108 132-179 (235)
80 4b4c_A Chromodomain-helicase-D 98.0 3.2E-05 1.1E-09 64.3 10.7 146 56-206 6-198 (211)
81 2crg_A Metastasis associated p 98.0 1.4E-05 4.6E-10 56.8 5.7 45 56-105 7-52 (70)
82 1fex_A TRF2-interacting telome 97.7 6.2E-05 2.1E-09 51.7 5.5 48 153-200 2-55 (59)
83 3hm5_A DNA methyltransferase 1 97.7 0.00013 4.4E-09 54.7 7.2 54 51-108 24-81 (93)
84 2xag_B REST corepressor 1; ami 97.5 8.7E-05 3E-09 69.9 5.8 46 57-107 380-425 (482)
85 1ug2_A 2610100B20RIK gene prod 97.4 0.00035 1.2E-08 52.2 6.5 47 58-106 34-80 (95)
86 2ebi_A DNA binding protein GT- 97.4 0.0002 6.9E-09 51.9 4.6 60 152-211 3-72 (86)
87 4iej_A DNA methyltransferase 1 97.3 0.00082 2.8E-08 50.3 7.5 55 151-209 28-87 (93)
88 2ebi_A DNA binding protein GT- 97.1 0.00047 1.6E-08 49.9 4.5 52 57-108 4-64 (86)
89 2lr8_A CAsp8-associated protei 95.9 0.00016 5.4E-09 51.3 0.0 46 59-107 16-61 (70)
90 1ofc_X ISWI protein; nuclear p 96.9 0.0011 3.8E-08 59.1 5.4 53 151-206 108-160 (304)
91 1fex_A TRF2-interacting telome 96.8 0.0025 8.7E-08 43.6 5.6 49 57-106 2-56 (59)
92 4iej_A DNA methyltransferase 1 96.4 0.0076 2.6E-07 45.1 6.3 49 55-107 28-80 (93)
93 2xb0_X Chromo domain-containin 95.9 0.062 2.1E-06 47.0 10.6 48 56-106 2-52 (270)
94 1irz_A ARR10-B; helix-turn-hel 94.2 0.26 8.9E-06 34.2 7.7 55 151-206 5-61 (64)
95 4b4c_A Chromodomain-helicase-D 94.1 0.097 3.3E-06 43.0 6.3 54 150-204 4-59 (211)
96 1irz_A ARR10-B; helix-turn-hel 90.5 0.69 2.4E-05 32.1 5.9 48 57-105 7-55 (64)
97 2xb0_X Chromo domain-containin 78.5 5.4 0.00019 34.7 7.1 51 153-204 3-55 (270)
98 2y9y_A Imitation switch protei 74.3 5.5 0.00019 36.3 6.2 51 151-204 121-172 (374)
99 2hzd_A Transcriptional enhance 74.2 10 0.00034 27.4 6.4 55 151-206 4-76 (82)
100 2hzd_A Transcriptional enhance 68.5 19 0.00063 26.0 6.7 52 56-107 5-72 (82)
101 2jrz_A Histone demethylase jar 46.2 25 0.00085 26.3 4.4 53 64-123 41-100 (117)
102 1kkx_A Transcription regulator 42.0 23 0.0008 26.8 3.7 52 64-123 49-104 (123)
103 2lm1_A Lysine-specific demethy 41.7 27 0.00093 25.4 3.9 51 64-122 45-103 (107)
104 2li6_A SWI/SNF chromatin-remod 38.6 18 0.00061 27.0 2.5 52 64-123 50-105 (116)
105 3i4p_A Transcriptional regulat 37.7 53 0.0018 25.1 5.3 42 159-204 3-44 (162)
106 1ig6_A MRF-2, modulator recogn 36.4 25 0.00085 25.7 2.9 53 64-123 34-94 (107)
107 1c20_A DEAD ringer protein; DN 35.0 46 0.0016 25.1 4.3 52 64-123 53-113 (128)
108 1qgp_A Protein (double strande 33.9 69 0.0024 21.9 4.8 47 157-204 12-58 (77)
109 2eqy_A RBP2 like, jumonji, at 31.6 55 0.0019 24.5 4.3 53 64-123 43-102 (122)
110 2oy9_A UPF0223 protein BH2638; 31.3 66 0.0022 23.9 4.4 41 58-109 11-51 (98)
111 2p1m_A SKP1-like protein 1A; F 31.3 57 0.002 25.3 4.5 14 154-167 141-154 (160)
112 2dbb_A Putative HTH-type trans 30.1 1.2E+02 0.0041 22.4 6.0 41 160-204 10-50 (151)
113 3v7d_A Suppressor of kinetocho 29.9 76 0.0026 25.0 5.0 13 154-166 149-161 (169)
114 2e1c_A Putative HTH-type trans 27.2 1.1E+02 0.0039 23.6 5.6 42 159-204 27-68 (171)
115 1i1g_A Transcriptional regulat 24.0 1.5E+02 0.005 21.5 5.4 40 161-204 6-45 (141)
116 1qbj_A Protein (double-strande 23.5 1.3E+02 0.0044 20.8 4.7 46 158-204 9-54 (81)
117 2ys8_A RAB-related GTP-binding 23.4 1.9E+02 0.0064 20.0 6.9 49 151-205 7-55 (90)
118 2kk0_A AT-rich interactive dom 23.0 75 0.0026 24.5 3.7 51 64-122 65-124 (145)
119 2cyy_A Putative HTH-type trans 22.3 1.8E+02 0.0063 21.4 5.8 40 161-204 9-48 (151)
120 2jxj_A Histone demethylase jar 22.2 37 0.0013 24.1 1.6 43 64-106 37-86 (96)
121 4ard_A Capsid protein P27; vir 21.8 62 0.0021 24.6 2.9 28 63-90 4-47 (116)
122 2cxy_A BAF250B subunit, HBAF25 21.4 89 0.003 23.4 3.8 50 64-121 52-109 (125)
123 2cg4_A Regulatory protein ASNC 21.2 1.7E+02 0.006 21.6 5.5 41 160-204 9-49 (152)
No 1
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.94 E-value=1.8e-26 Score=176.93 Aligned_cols=103 Identities=17% Similarity=0.263 Sum_probs=91.2
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCCCcchhhHHHHcCCCCCHHHHHHHHHHhhhcccCCchhHHHHhhhhcccchhhhhccc
Q 047185 57 EKEWNEEDIEILKKQMVKNPVGKPKRWEVIAEAFNGRHRVESVIKKAKELGEKKIDDSDSYNQFLKNRKAIDMRVVQENC 136 (214)
Q Consensus 57 ~~~WT~EE~~lL~kav~kyP~Gt~~RWe~IA~~lg~~RT~~qc~~k~k~l~~~~~~~~~~~~~~l~~~~~l~~r~~~~~~ 136 (214)
++.||.|||.+|.++|.+||. .+|..||.+|+ +||+.||.++|..++ +|
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~---~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L--------------------~p------- 49 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGA---KDWIRISQLMI-TRNPRQCRERWNNYI--------------------NP------- 49 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCS---SCHHHHHHHTT-TSCHHHHHHHHHHHS--------------------SS-------
T ss_pred CCCCCHHHHHHHHHHHHHHCC---CCHHHHhhhcC-CCCHHHHHHHHHHHH--------------------cc-------
Confidence 478999999999999999953 58999999998 799999999997653 23
Q ss_pred ccccccccccccCCCCCCCCCHHHHHHHHHHHHhCCCCCCCcHHHHHhhCCCCCHHHHHHHHHHHHHHHhc
Q 047185 137 EDSKKESQENVVVGGGGGVWNAGEDIALLNALKAFPKDVPLRWEKIAAAVPGRSKAACMKRFSDLKRDFRS 207 (214)
Q Consensus 137 ~~~~s~~~~~~~~~~~~~~WT~eED~~L~~al~~~p~~~~~rW~kIA~~vPGRT~~qc~~Ry~~L~~~v~~ 207 (214)
.+..++||+|||.+|+.++..|+ .+|..||.+|||||+.||++||..|.....+
T Consensus 50 -------------~i~~~~WT~eEd~~L~~~~~~~G----~~W~~Ia~~l~gRt~~~~k~rw~~l~r~~~~ 103 (107)
T 2k9n_A 50 -------------ALRTDPWSPEEDMLLDQKYAEYG----PKWNKISKFLKNRSDNNIRNRWMMIARHRAK 103 (107)
T ss_dssp -------------CCTTCCCCHHHHHHHHHHHHHTC----SCHHHHHHHHSSSCHHHHHHHHHHHHHHHHS
T ss_pred -------------cccccccCHHHHHHHHHHHHHhC----cCHHHHHHHCCCCCHHHHHHHHHHHHhhHHH
Confidence 47889999999999999999995 5999999999999999999999988766543
No 2
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.93 E-value=4.4e-26 Score=173.54 Aligned_cols=99 Identities=23% Similarity=0.350 Sum_probs=88.9
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCCCcchhhHHHHcCCCCCHHHHHHHHHHhhhcccCCchhHHHHhhhhcccchhhhhcc
Q 047185 56 EEKEWNEEDIEILKKQMVKNPVGKPKRWEVIAEAFNGRHRVESVIKKAKELGEKKIDDSDSYNQFLKNRKAIDMRVVQEN 135 (214)
Q Consensus 56 ~~~~WT~EE~~lL~kav~kyP~Gt~~RWe~IA~~lg~~RT~~qc~~k~k~l~~~~~~~~~~~~~~l~~~~~l~~r~~~~~ 135 (214)
..++||.|||.+|.++|.+||. .+|..||.+|+ +||..||..+|..++ +|
T Consensus 3 ~k~~WT~eED~~L~~~v~~~g~---~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l--------------------~p------ 52 (105)
T 1gv2_A 3 IKGPWTKEEDQRVIKLVQKYGP---KRWSVIAKHLK-GRIGKQCRERWHNHL--------------------NP------ 52 (105)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCT---TCHHHHHTTST-TCCHHHHHHHHHHTT--------------------CC------
T ss_pred CCCCCCHHHHHHHHHHHHHhCC---CcHHHHhhhhc-CCCHHHHHHHHHhcc--------------------CC------
Confidence 5789999999999999999953 47999999998 799999999997653 23
Q ss_pred cccccccccccccCCCCCCCCCHHHHHHHHHHHHhCCCCCCCcHHHHHhhCCCCCHHHHHHHHHHHH
Q 047185 136 CEDSKKESQENVVVGGGGGVWNAGEDIALLNALKAFPKDVPLRWEKIAAAVPGRSKAACMKRFSDLK 202 (214)
Q Consensus 136 ~~~~~s~~~~~~~~~~~~~~WT~eED~~L~~al~~~p~~~~~rW~kIA~~vPGRT~~qc~~Ry~~L~ 202 (214)
.+..++||+|||.+|+.++..|+ .+|..||..|||||+.||++||+.|+
T Consensus 53 --------------~~~~~~Wt~eEd~~L~~~~~~~G----~~W~~Ia~~l~gRt~~~~k~rw~~~~ 101 (105)
T 1gv2_A 53 --------------EVKKTSWTEEEDRIIYQAHKRLG----NRWAEIAKLLPGRTDNAIKNHWNSTM 101 (105)
T ss_dssp --------------CCCCCCCCHHHHHHHHHHHHHHS----SCHHHHHTTCTTCCHHHHHHHHHHHT
T ss_pred --------------cccccCCCHHHHHHHHHHHHHhC----CCHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 47889999999999999999995 69999999999999999999998764
No 3
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.93 E-value=1e-25 Score=177.42 Aligned_cols=104 Identities=21% Similarity=0.435 Sum_probs=92.7
Q ss_pred cCCCCCCHHHHHHHHHHHHhCCCCCCcchhhHHHHcCCCCCHHHHHHHHHHhhhcccCCchhHHHHhhhhcccchhhhhc
Q 047185 55 EEEKEWNEEDIEILKKQMVKNPVGKPKRWEVIAEAFNGRHRVESVIKKAKELGEKKIDDSDSYNQFLKNRKAIDMRVVQE 134 (214)
Q Consensus 55 ~~~~~WT~EE~~lL~kav~kyP~Gt~~RWe~IA~~lg~~RT~~qc~~k~k~l~~~~~~~~~~~~~~l~~~~~l~~r~~~~ 134 (214)
...+.||.|||++|.++|.+| |+ +|..||.+|+ +||..||..+|..++ +|
T Consensus 9 ~kk~~WT~eED~~L~~~v~~~--G~--~W~~Ia~~~~-~Rt~~qcr~Rw~~~l--------------------~p----- 58 (126)
T 3osg_A 9 AKKQKFTPEEDEMLKRAVAQH--GS--DWKMIAATFP-NRNARQCRDRWKNYL--------------------AP----- 58 (126)
T ss_dssp CSSCCCCHHHHHHHHHHHHHH--TT--CHHHHHHTCT-TCCHHHHHHHHHHHT--------------------ST-----
T ss_pred CCCCCCCHHHHHHHHHHHHHh--CC--CHHHHHHHcC-CCCHHHHHHHHhhhc--------------------cc-----
Confidence 467899999999999999999 44 8999999998 799999999997653 23
Q ss_pred ccccccccccccccCCCCCCCCCHHHHHHHHHHHHhCCCCCCCcHHHHHhhCCCCCHHHHHHHHHHHHHHHhc
Q 047185 135 NCEDSKKESQENVVVGGGGGVWNAGEDIALLNALKAFPKDVPLRWEKIAAAVPGRSKAACMKRFSDLKRDFRS 207 (214)
Q Consensus 135 ~~~~~~s~~~~~~~~~~~~~~WT~eED~~L~~al~~~p~~~~~rW~kIA~~vPGRT~~qc~~Ry~~L~~~v~~ 207 (214)
.+..++||+|||.+|+.++..|+ .+|..||..|||||+.||++||..|+..+..
T Consensus 59 ---------------~~~~~~WT~eEd~~L~~~v~~~G----~~W~~Ia~~l~gRt~~~~k~rw~~l~~k~~~ 112 (126)
T 3osg_A 59 ---------------SISHTPWTAEEDALLVQKIQEYG----RQWAIIAKFFPGRTDIHIKNRWVTISNKLGI 112 (126)
T ss_dssp ---------------TSCCSCCCHHHHHHHHHHHHHHC----SCHHHHHTTSTTCCHHHHHHHHHHHHHHTTC
T ss_pred ---------------ccccccCCHHHHHHHHHHHHHHC----cCHHHHHHHcCCCCHHHHHHHHHHHHHhcCC
Confidence 47789999999999999999995 6899999999999999999999998876543
No 4
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.93 E-value=1.7e-25 Score=176.18 Aligned_cols=113 Identities=19% Similarity=0.290 Sum_probs=89.7
Q ss_pred CchhhhHhhhhhc----cCCCCCCHHHHHHHHHHHHhCCCCCCcchhhHHHHcCCCCCHHHHHHHHHHhhhcccCCchhH
Q 047185 42 SKGEKVEVLQRKS----EEEKEWNEEDIEILKKQMVKNPVGKPKRWEVIAEAFNGRHRVESVIKKAKELGEKKIDDSDSY 117 (214)
Q Consensus 42 ~~~~~~~~~~~~~----~~~~~WT~EE~~lL~kav~kyP~Gt~~RWe~IA~~lg~~RT~~qc~~k~k~l~~~~~~~~~~~ 117 (214)
+++...+.-|..+ .+.++||.|||.+|.++|++|+. .+|..||.+|+ +||..||..+|..++
T Consensus 8 Rt~~qC~~Rw~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~---~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l---------- 73 (128)
T 1h8a_C 8 RTDVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGP---KRWSDIAKHLK-GRIGKQCRERWHNHL---------- 73 (128)
T ss_dssp --------------CTTCCCSCCCHHHHHHHHHHHHHTCS---CCHHHHHHHSS-SCCHHHHHHHHHHTT----------
T ss_pred CCHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHCC---CCHHHHHHHhc-CCcHHHHHHHHHHhc----------
Confidence 4444444456665 47899999999999999999953 47999999998 799999999997653
Q ss_pred HHHhhhhcccchhhhhcccccccccccccccCCCCCCCCCHHHHHHHHHHHHhCCCCCCCcHHHHHhhCCCCCHHHHHHH
Q 047185 118 NQFLKNRKAIDMRVVQENCEDSKKESQENVVVGGGGGVWNAGEDIALLNALKAFPKDVPLRWEKIAAAVPGRSKAACMKR 197 (214)
Q Consensus 118 ~~~l~~~~~l~~r~~~~~~~~~~s~~~~~~~~~~~~~~WT~eED~~L~~al~~~p~~~~~rW~kIA~~vPGRT~~qc~~R 197 (214)
+| .+..++||+|||.+|+.++..|+ .+|..||..|||||+.+|++|
T Consensus 74 ----------~p--------------------~~~~~~WT~eEd~~L~~~~~~~G----~~W~~Ia~~l~gRt~~~~k~r 119 (128)
T 1h8a_C 74 ----------NP--------------------EVKKTSWTEEEDRIIYQAHKRLG----NRWAEIAKLLPGRTDNAVKNH 119 (128)
T ss_dssp ----------CS--------------------SSCCSCCCHHHHHHHHHHHHHHC----SCHHHHGGGSTTCCHHHHHHH
T ss_pred ----------cc--------------------ccccccCCHHHHHHHHHHHHHHC----cCHHHHHHHCCCCCHHHHHHH
Confidence 23 47889999999999999999995 699999999999999999999
Q ss_pred HHHHH
Q 047185 198 FSDLK 202 (214)
Q Consensus 198 y~~L~ 202 (214)
|+.|+
T Consensus 120 ~~~~~ 124 (128)
T 1h8a_C 120 WNSTM 124 (128)
T ss_dssp HHTTT
T ss_pred HHHHH
Confidence 98764
No 5
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.92 E-value=6.8e-25 Score=173.66 Aligned_cols=99 Identities=16% Similarity=0.307 Sum_probs=88.2
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCCCcchhhHHHHcCCCCCHHHHHHHHHHhhhcccCCchhHHHHhhhhcccchhhhhccc
Q 047185 57 EKEWNEEDIEILKKQMVKNPVGKPKRWEVIAEAFNGRHRVESVIKKAKELGEKKIDDSDSYNQFLKNRKAIDMRVVQENC 136 (214)
Q Consensus 57 ~~~WT~EE~~lL~kav~kyP~Gt~~RWe~IA~~lg~~RT~~qc~~k~k~l~~~~~~~~~~~~~~l~~~~~l~~r~~~~~~ 136 (214)
+++||.|||++|.++|.+|+ . .+|..||.+|+ +||..||..+|..++ +|
T Consensus 2 Kg~Wt~eED~~L~~~v~~~g--~-~~W~~Ia~~~~-~Rt~~qcr~Rw~~~l--------------------~p------- 50 (131)
T 3zqc_A 2 KGPFTEAEDDLIREYVKENG--P-QNWPRITSFLP-NRSPKQCRERWFNHL--------------------DP------- 50 (131)
T ss_dssp CSSCCHHHHHHHHHHHHHHC--S-CCGGGGTTSCT-TSCHHHHHHHHHHHT--------------------ST-------
T ss_pred CCCCCHHHHHHHHHHHHHhC--c-CCHHHHHHHHC-CCCHHHHHHHHhhcc--------------------Cc-------
Confidence 57999999999999999994 3 48999999998 799999999997653 23
Q ss_pred ccccccccccccCCCCCCCCCHHHHHHHHHHHHhCCCCCCCcHHHHHhhCCCCCHHHHHHHHHHHHH
Q 047185 137 EDSKKESQENVVVGGGGGVWNAGEDIALLNALKAFPKDVPLRWEKIAAAVPGRSKAACMKRFSDLKR 203 (214)
Q Consensus 137 ~~~~s~~~~~~~~~~~~~~WT~eED~~L~~al~~~p~~~~~rW~kIA~~vPGRT~~qc~~Ry~~L~~ 203 (214)
.+..++||+|||.+|+.++..|+ .+|..||..|||||+.||++||..++.
T Consensus 51 -------------~~~~~~Wt~eEd~~L~~~~~~~G----~~W~~Ia~~l~gRt~~~~k~rw~~~l~ 100 (131)
T 3zqc_A 51 -------------AVVKHAWTPEEDETIFRNYLKLG----SKWSVIAKLIPGRTDNAIKNRWNSSIS 100 (131)
T ss_dssp -------------TCCCSCCCHHHHHHHHHHHHHSC----SCHHHHTTTSTTCCHHHHHHHHHHTTG
T ss_pred -------------cccCCCCCHHHHHHHHHHHHHHC----cCHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 47789999999999999999995 689999999999999999999987543
No 6
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.90 E-value=8.9e-24 Score=171.72 Aligned_cols=115 Identities=21% Similarity=0.288 Sum_probs=95.6
Q ss_pred CCCchhhhHhhhhhc----cCCCCCCHHHHHHHHHHHHhCCCCCCcchhhHHHHcCCCCCHHHHHHHHHHhhhcccCCch
Q 047185 40 NESKGEKVEVLQRKS----EEEKEWNEEDIEILKKQMVKNPVGKPKRWEVIAEAFNGRHRVESVIKKAKELGEKKIDDSD 115 (214)
Q Consensus 40 ~~~~~~~~~~~~~~~----~~~~~WT~EE~~lL~kav~kyP~Gt~~RWe~IA~~lg~~RT~~qc~~k~k~l~~~~~~~~~ 115 (214)
+.+++...+.-|.++ ...++||.|||.+|.+++++|+. .+|..||.+|+ +||..||..+|..++
T Consensus 37 ~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~v~~~g~---~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l-------- 104 (159)
T 1h89_C 37 PNRTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIKLVQKYGP---KRWSVIAKHLK-GRIGKQCRERWHNHL-------- 104 (159)
T ss_dssp ------CHHHHHHTTTCTTCCCSCCCHHHHHHHHHHHHHHCS---CCHHHHHHTST-TCCHHHHHHHHHHTT--------
T ss_pred CCCCHHHHHHHHHHccCCCcCCCCCChHHHHHHHHHHHHhCc---ccHHHHHHHcC-CCCHHHHHHHHHHHh--------
Confidence 346666666667776 46899999999999999999953 58999999998 799999999997653
Q ss_pred hHHHHhhhhcccchhhhhcccccccccccccccCCCCCCCCCHHHHHHHHHHHHhCCCCCCCcHHHHHhhCCCCCHHHHH
Q 047185 116 SYNQFLKNRKAIDMRVVQENCEDSKKESQENVVVGGGGGVWNAGEDIALLNALKAFPKDVPLRWEKIAAAVPGRSKAACM 195 (214)
Q Consensus 116 ~~~~~l~~~~~l~~r~~~~~~~~~~s~~~~~~~~~~~~~~WT~eED~~L~~al~~~p~~~~~rW~kIA~~vPGRT~~qc~ 195 (214)
+| .+..++||++||.+|+.++..|+ .+|..||.+|||||+.+|+
T Consensus 105 ------------~p--------------------~~~~~~WT~eEd~~L~~~~~~~g----~~W~~Ia~~l~gRt~~~~k 148 (159)
T 1h89_C 105 ------------NP--------------------EVKKTSWTEEEDRIIYQAHKRLG----NRWAEIAKLLPGRTDNAIK 148 (159)
T ss_dssp ------------CT--------------------TSCCSCCCHHHHHHHHHHHHHHC----SCHHHHHTTSTTCCHHHHH
T ss_pred ------------Cc--------------------cccccCCChHHHHHHHHHHHHHC----CCHHHHHHHCCCCCHHHHH
Confidence 23 46789999999999999999995 6999999999999999999
Q ss_pred HHHHHHH
Q 047185 196 KRFSDLK 202 (214)
Q Consensus 196 ~Ry~~L~ 202 (214)
+||+.|.
T Consensus 149 nr~~~~~ 155 (159)
T 1h89_C 149 NHWNSTM 155 (159)
T ss_dssp HHHHTTT
T ss_pred HHHHHHH
Confidence 9998764
No 7
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.87 E-value=4e-23 Score=167.85 Aligned_cols=99 Identities=23% Similarity=0.417 Sum_probs=53.3
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCCCcchhhHHHHcCCCCCHHHHHHHHHHhhhcccCCchhHHHHhhhhcccchhhhhcc
Q 047185 56 EEKEWNEEDIEILKKQMVKNPVGKPKRWEVIAEAFNGRHRVESVIKKAKELGEKKIDDSDSYNQFLKNRKAIDMRVVQEN 135 (214)
Q Consensus 56 ~~~~WT~EE~~lL~kav~kyP~Gt~~RWe~IA~~lg~~RT~~qc~~k~k~l~~~~~~~~~~~~~~l~~~~~l~~r~~~~~ 135 (214)
..+.||.|||++|.++|.+|+ + .+|..||.+|+ +||+.||..+|..++ +|
T Consensus 5 ~k~~Wt~eED~~L~~~v~~~g--~-~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l--------------------~p------ 54 (159)
T 1h89_C 5 GKTRWTREEDEKLKKLVEQNG--T-DDWKVIANYLP-NRTDVQCQHRWQKVL--------------------NP------ 54 (159)
T ss_dssp ------------------------------------------CHHHHHHTTT--------------------CT------
T ss_pred CCCCCCHHHHHHHHHHHHHhC--C-CCHHHHHHHcC-CCCHHHHHHHHHHcc--------------------CC------
Confidence 568899999999999999995 3 58999999998 799999999996542 23
Q ss_pred cccccccccccccCCCCCCCCCHHHHHHHHHHHHhCCCCCCCcHHHHHhhCCCCCHHHHHHHHHHH
Q 047185 136 CEDSKKESQENVVVGGGGGVWNAGEDIALLNALKAFPKDVPLRWEKIAAAVPGRSKAACMKRFSDL 201 (214)
Q Consensus 136 ~~~~~s~~~~~~~~~~~~~~WT~eED~~L~~al~~~p~~~~~rW~kIA~~vPGRT~~qc~~Ry~~L 201 (214)
.+..++||++||.+|..++..|+. .+|..||..|||||+.||++||..+
T Consensus 55 --------------~~~~~~Wt~eEd~~L~~~v~~~g~---~~W~~Ia~~l~~Rt~~qcr~Rw~~~ 103 (159)
T 1h89_C 55 --------------ELIKGPWTKEEDQRVIKLVQKYGP---KRWSVIAKHLKGRIGKQCRERWHNH 103 (159)
T ss_dssp --------------TCCCSCCCHHHHHHHHHHHHHHCS---CCHHHHHHTSTTCCHHHHHHHHHHT
T ss_pred --------------CcCCCCCChHHHHHHHHHHHHhCc---ccHHHHHHHcCCCCHHHHHHHHHHH
Confidence 467899999999999999999963 5899999999999999999999864
No 8
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=99.72 E-value=9.3e-18 Score=126.68 Aligned_cols=62 Identities=35% Similarity=0.633 Sum_probs=57.4
Q ss_pred CCCCCCCHHHHHHHHHHHHhCCCCCCCcHHHHHhhCCCCCHHHHHHHHHHHHHHHhchhccc
Q 047185 151 GGGGVWNAGEDIALLNALKAFPKDVPLRWEKIAAAVPGRSKAACMKRFSDLKRDFRSSKAGD 212 (214)
Q Consensus 151 ~~~~~WT~eED~~L~~al~~~p~~~~~rW~kIA~~vPGRT~~qc~~Ry~~L~~~v~~~k~~~ 212 (214)
...++||.+||++|+.||..|+.+++++|.+||.+|||||++||++||+.|+++|..++++.
T Consensus 6 ~~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~~dv~~iesg~ 67 (93)
T 2cjj_A 6 GSGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKYIESGK 67 (93)
T ss_dssp --CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHSS
T ss_pred CCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhcCC
Confidence 45779999999999999999999889999999999999999999999999999999998874
No 9
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.72 E-value=4e-18 Score=123.37 Aligned_cols=58 Identities=29% Similarity=0.523 Sum_probs=54.1
Q ss_pred CCCCCCCCHHHHHHHHHHHHhCCCCCCCcHHHHHhhCCCCCHHHHHHHHHHHHHHHhc
Q 047185 150 GGGGGVWNAGEDIALLNALKAFPKDVPLRWEKIAAAVPGRSKAACMKRFSDLKRDFRS 207 (214)
Q Consensus 150 ~~~~~~WT~eED~~L~~al~~~p~~~~~rW~kIA~~vPGRT~~qc~~Ry~~L~~~v~~ 207 (214)
....++||.+||++|+.||..||.+.+++|.+||.+|||||++||++||+.|+++|.+
T Consensus 15 ~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~d~~~ 72 (73)
T 2cqr_A 15 RSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVSGPSS 72 (73)
T ss_dssp TCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHSSCCC
T ss_pred ccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHcccC
Confidence 4678899999999999999999987789999999999999999999999999988754
No 10
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.64 E-value=1e-16 Score=116.01 Aligned_cols=61 Identities=33% Similarity=0.494 Sum_probs=55.8
Q ss_pred CCCCCCCHHHHHHHHHHHHhCCCCCCCcHHHHHhhCCCCCHHHHHHHHHHHHHHHhchhcc
Q 047185 151 GGGGVWNAGEDIALLNALKAFPKDVPLRWEKIAAAVPGRSKAACMKRFSDLKRDFRSSKAG 211 (214)
Q Consensus 151 ~~~~~WT~eED~~L~~al~~~p~~~~~rW~kIA~~vPGRT~~qc~~Ry~~L~~~v~~~k~~ 211 (214)
.....||.+|+++|++||..||.++++||++||.+|||||..||+.||..|...+.+.|-+
T Consensus 6 ~~~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~~~~~s~~~~ 66 (73)
T 1wgx_A 6 SGDKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPRGKGSQKHV 66 (73)
T ss_dssp CSSSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSSSSCCCCSS
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHHhcccccccc
Confidence 3467899999999999999999999999999999999999999999999998887776654
No 11
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.62 E-value=3.7e-16 Score=122.65 Aligned_cols=72 Identities=17% Similarity=0.362 Sum_probs=45.6
Q ss_pred HHHHcCCCCCHHHHHHHHHHhhhcccCCchhHHHHhhhhcccchhhhhcccccccccccccccCCCCCCCCCHHHHHHHH
Q 047185 86 IAEAFNGRHRVESVIKKAKELGEKKIDDSDSYNQFLKNRKAIDMRVVQENCEDSKKESQENVVVGGGGGVWNAGEDIALL 165 (214)
Q Consensus 86 IA~~lg~~RT~~qc~~k~k~l~~~~~~~~~~~~~~l~~~~~l~~r~~~~~~~~~~s~~~~~~~~~~~~~~WT~eED~~L~ 165 (214)
||+.|+ +||+.||..+|..++ +| .+.+++||+|||.+|.
T Consensus 1 Ia~~~~-~Rt~~qC~~Rw~~~l--------------------~p--------------------~~~k~~Wt~eED~~L~ 39 (128)
T 1h8a_C 1 MEAVIK-NRTDVQCQHRWQKVL--------------------NP--------------------ELNKGPWTKEEDQRVI 39 (128)
T ss_dssp ------------------------------------------CT--------------------TCCCSCCCHHHHHHHH
T ss_pred CccccC-CCCHHHHHHHHHHhh--------------------CC--------------------CCCCCCCCHHHHHHHH
Confidence 899998 799999999996542 23 4788999999999999
Q ss_pred HHHHhCCCCCCCcHHHHHhhCCCCCHHHHHHHHHHH
Q 047185 166 NALKAFPKDVPLRWEKIAAAVPGRSKAACMKRFSDL 201 (214)
Q Consensus 166 ~al~~~p~~~~~rW~kIA~~vPGRT~~qc~~Ry~~L 201 (214)
.++..|+. .+|..||..|||||..||++||..+
T Consensus 40 ~~v~~~g~---~~W~~Ia~~l~~Rt~~qcr~Rw~~~ 72 (128)
T 1h8a_C 40 EHVQKYGP---KRWSDIAKHLKGRIGKQCRERWHNH 72 (128)
T ss_dssp HHHHHTCS---CCHHHHHHHSSSCCHHHHHHHHHHT
T ss_pred HHHHHHCC---CCHHHHHHHhcCCcHHHHHHHHHHh
Confidence 99999963 5899999999999999999999864
No 12
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.60 E-value=1.1e-15 Score=110.25 Aligned_cols=60 Identities=30% Similarity=0.550 Sum_probs=54.4
Q ss_pred CCCCCCCCHHHHHHHHHHHHhCCCCCCCcHHHHHhhCCCCCHHHHHHHHHHHHHHHhchhcc
Q 047185 150 GGGGGVWNAGEDIALLNALKAFPKDVPLRWEKIAAAVPGRSKAACMKRFSDLKRDFRSSKAG 211 (214)
Q Consensus 150 ~~~~~~WT~eED~~L~~al~~~p~~~~~rW~kIA~~vPGRT~~qc~~Ry~~L~~~v~~~k~~ 211 (214)
+...+.||.+||++|+.||..||.++++||++||.+| |||.+||++||+.|.+++ .++++
T Consensus 5 ~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~~d~-~~~~G 64 (72)
T 2cqq_A 5 SSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDSV-TCSPG 64 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHHSC-CCCSC
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHHHhc-CccCC
Confidence 4567899999999999999999999999999999997 999999999999999996 45554
No 13
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.57 E-value=4.3e-15 Score=107.14 Aligned_cols=53 Identities=43% Similarity=0.728 Sum_probs=49.1
Q ss_pred cCCCCCCHHHHHHHHHHHHhCCCCCCcchhhHHHHcCCCCCHHHHHHHHHHhhhc
Q 047185 55 EEEKEWNEEDIEILKKQMVKNPVGKPKRWEVIAEAFNGRHRVESVIKKAKELGEK 109 (214)
Q Consensus 55 ~~~~~WT~EE~~lL~kav~kyP~Gt~~RWe~IA~~lg~~RT~~qc~~k~k~l~~~ 109 (214)
...+.||.||+.+|.+|+++||.||++||++||++|| ||++||+.+|+.|.+.
T Consensus 6 ~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~lg--Rt~~eV~~~y~~L~~d 58 (72)
T 2cqq_A 6 SGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHELG--RSVTDVTTKAKQLKDS 58 (72)
T ss_dssp CCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHHT--SCHHHHHHHHHHHHHS
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHhC--CCHHHHHHHHHHHHHh
Confidence 4577999999999999999999999999999999995 9999999999998654
No 14
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=7e-15 Score=105.70 Aligned_cols=57 Identities=21% Similarity=0.416 Sum_probs=49.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHhCCCCC--CCcHHHHHhhCCCCCHHHHHHHH-HHHHHHHh
Q 047185 150 GGGGGVWNAGEDIALLNALKAFPKDV--PLRWEKIAAAVPGRSKAACMKRF-SDLKRDFR 206 (214)
Q Consensus 150 ~~~~~~WT~eED~~L~~al~~~p~~~--~~rW~kIA~~vPGRT~~qc~~Ry-~~L~~~v~ 206 (214)
.+.+++||+|||.+|+.+|..|+.+. +.+|.+||.+|||||+.||++|| ++|...++
T Consensus 5 ~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~~k 64 (75)
T 2yum_A 5 SSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLTK 64 (75)
T ss_dssp CCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGGST
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHHHh
Confidence 57889999999999999999998543 27999999999999999999999 55655443
No 15
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=99.52 E-value=1.9e-15 Score=109.08 Aligned_cols=49 Identities=39% Similarity=0.641 Sum_probs=44.1
Q ss_pred CCCCCCCHHHHHHHHHHHHhCCCCCCCcHHHHHhhCCCCCHHHHHHHHH
Q 047185 151 GGGGVWNAGEDIALLNALKAFPKDVPLRWEKIAAAVPGRSKAACMKRFS 199 (214)
Q Consensus 151 ~~~~~WT~eED~~L~~al~~~p~~~~~rW~kIA~~vPGRT~~qc~~Ry~ 199 (214)
.....||.+|+++|++||..||+++++||.+||.+|||||..||+.+|.
T Consensus 18 ~ss~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 18 GSGRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE 66 (74)
T ss_dssp ----CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence 3467899999999999999999999999999999999999999999995
No 16
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=2.4e-14 Score=100.63 Aligned_cols=58 Identities=28% Similarity=0.558 Sum_probs=52.0
Q ss_pred CCCCCCCCHHHHHHHHHHHHhCCCCCCCcHHHHHhhCCCCCHHHHHHHHHHHHHHHhchhccc
Q 047185 150 GGGGGVWNAGEDIALLNALKAFPKDVPLRWEKIAAAVPGRSKAACMKRFSDLKRDFRSSKAGD 212 (214)
Q Consensus 150 ~~~~~~WT~eED~~L~~al~~~p~~~~~rW~kIA~~vPGRT~~qc~~Ry~~L~~~v~~~k~~~ 212 (214)
.+.+++||+|||.+|+.++..|+ .+|..||. +||||+.||++||..++.....+++..
T Consensus 6 ~~~k~~WT~eED~~L~~~~~~~g----~~W~~Ia~-~~gRt~~qcr~Rw~~~l~~~~~~~~~~ 63 (66)
T 2din_A 6 SGKKTEWSREEEEKLLHLAKLMP----TQWRTIAP-IIGRTAAQCLEHYEFLLDKAAQRDSGP 63 (66)
T ss_dssp SSSCCCCCHHHHHHHHHHHHHCT----TCHHHHHH-HHSSCHHHHHHHHHHHHHHHHHSSSCC
T ss_pred CCCCCCCCHHHHHHHHHHHHHcC----CCHHHHhc-ccCcCHHHHHHHHHHHhChHhcCCCCC
Confidence 58899999999999999999996 59999999 999999999999999888777766543
No 17
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=1.3e-14 Score=103.07 Aligned_cols=48 Identities=25% Similarity=0.410 Sum_probs=43.4
Q ss_pred cCCCCCCHHHHHHHHHHHHhCCCCCCcchhhHHHHcCCCCCHHHHHHHHHHh
Q 047185 55 EEEKEWNEEDIEILKKQMVKNPVGKPKRWEVIAEAFNGRHRVESVIKKAKEL 106 (214)
Q Consensus 55 ~~~~~WT~EE~~lL~kav~kyP~Gt~~RWe~IA~~lg~~RT~~qc~~k~k~l 106 (214)
.+.++||.|||.+|.++|.+|+ + .+|..||.+|+ +||..||..||..+
T Consensus 7 ~k~~~Wt~eED~~L~~~v~~~G--~-~~W~~Ia~~l~-~Rt~~qcr~Rw~~~ 54 (70)
T 2dim_A 7 GKGGVWRNTEDEILKAAVMKYG--K-NQWSRIASLLH-RKSAKQCKARWYEW 54 (70)
T ss_dssp STTCCCCHHHHHHHHHHHHHTC--S-SCHHHHHHHST-TCCHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHHHC--c-CCHHHHHHHhc-CCCHHHHHHHHHHH
Confidence 5678999999999999999994 3 58999999999 79999999999765
No 18
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.49 E-value=3.8e-14 Score=102.52 Aligned_cols=52 Identities=29% Similarity=0.456 Sum_probs=48.6
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCCCcchhhHHHHcCCCCCHHHHHHHHHHhhh
Q 047185 56 EEKEWNEEDIEILKKQMVKNPVGKPKRWEVIAEAFNGRHRVESVIKKAKELGE 108 (214)
Q Consensus 56 ~~~~WT~EE~~lL~kav~kyP~Gt~~RWe~IA~~lg~~RT~~qc~~k~k~l~~ 108 (214)
....||.+|+.+|..|++.||.++++||+.||++|| +||++||+.+|+++..
T Consensus 7 ~~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~-gKT~eE~~~hY~~l~~ 58 (73)
T 1wgx_A 7 GDKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVG-SRSPEECQRKYMENPR 58 (73)
T ss_dssp SSSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTT-TSCHHHHHHHHHHSSS
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcC-CCCHHHHHHHHHHHHh
Confidence 457899999999999999999999999999999999 6999999999998854
No 19
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.49 E-value=5e-14 Score=94.44 Aligned_cols=48 Identities=25% Similarity=0.488 Sum_probs=43.5
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCCCCcHHHHHhhCCCCCHHHHHHHHHHHH
Q 047185 152 GGGVWNAGEDIALLNALKAFPKDVPLRWEKIAAAVPGRSKAACMKRFSDLK 202 (214)
Q Consensus 152 ~~~~WT~eED~~L~~al~~~p~~~~~rW~kIA~~vPGRT~~qc~~Ry~~L~ 202 (214)
.+++||+|||.+|..++..|+. .+|..||..|||||+.||++||..++
T Consensus 2 ~~~~Wt~eED~~L~~~v~~~G~---~~W~~Ia~~~~~Rt~~qcr~Rw~~~L 49 (52)
T 1guu_A 2 GKTRWTREEDEKLKKLVEQNGT---DDWKVIANYLPNRTDVQCQHRWQKVL 49 (52)
T ss_dssp -CCCCCHHHHHHHHHHHHHHCS---SCHHHHHHTSTTCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCC---CCHHHHHHHcCCCCHHHHHHHHHHHc
Confidence 5789999999999999999963 49999999999999999999998764
No 20
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.48 E-value=6e-14 Score=97.11 Aligned_cols=49 Identities=27% Similarity=0.528 Sum_probs=45.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHhCCCCCCCcHHHHHhhCCCCCHHHHHHHHHHH
Q 047185 150 GGGGGVWNAGEDIALLNALKAFPKDVPLRWEKIAAAVPGRSKAACMKRFSDL 201 (214)
Q Consensus 150 ~~~~~~WT~eED~~L~~al~~~p~~~~~rW~kIA~~vPGRT~~qc~~Ry~~L 201 (214)
.+..++||++||.+|+.++..|+. .+|..||..|||||+.||++||..+
T Consensus 5 ~~~~~~WT~eED~~L~~~v~~~G~---~~W~~Ia~~~~~Rt~~qcr~r~~~~ 53 (60)
T 1x41_A 5 SSGDPSWTAQEEMALLEAVMDCGF---GNWQDVANQMCTKTKEECEKHYMKY 53 (60)
T ss_dssp CCCCSSSCHHHHHHHHHHHHHTCT---TCHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCc---CcHHHHHHHhCCCCHHHHHHHHHHH
Confidence 578899999999999999999963 5999999999999999999999864
No 21
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.47 E-value=9.5e-14 Score=99.28 Aligned_cols=52 Identities=19% Similarity=0.289 Sum_probs=47.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhCCCCCCCcHHHHHhhCCCCCHHHHHHHHHHHHHH
Q 047185 149 VGGGGGVWNAGEDIALLNALKAFPKDVPLRWEKIAAAVPGRSKAACMKRFSDLKRD 204 (214)
Q Consensus 149 ~~~~~~~WT~eED~~L~~al~~~p~~~~~rW~kIA~~vPGRT~~qc~~Ry~~L~~~ 204 (214)
+.+..++||+|||.+|+.++..|+ .+|..||.+|||||+.||++||..+...
T Consensus 5 p~~~~~~WT~eEd~~l~~~~~~~G----~~W~~Ia~~~~~Rt~~q~k~r~~~~l~~ 56 (72)
T 2cu7_A 5 SSGYSVKWTIEEKELFEQGLAKFG----RRWTKISKLIGSRTVLQVKSYARQYFKN 56 (72)
T ss_dssp CSSCCCCCCHHHHHHHHHHHHHTC----SCHHHHHHHHSSSCHHHHHHHHHHHHHH
T ss_pred CCcCCCCCCHHHHHHHHHHHHHHC----cCHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 368899999999999999999996 5999999999999999999999875544
No 22
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.46 E-value=7.2e-14 Score=93.73 Aligned_cols=47 Identities=28% Similarity=0.565 Sum_probs=43.1
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCCCCcHHHHHhhCCCCCHHHHHHHHHHH
Q 047185 152 GGGVWNAGEDIALLNALKAFPKDVPLRWEKIAAAVPGRSKAACMKRFSDL 201 (214)
Q Consensus 152 ~~~~WT~eED~~L~~al~~~p~~~~~rW~kIA~~vPGRT~~qc~~Ry~~L 201 (214)
.+++||+|||.+|..++..|+. .+|..||..|||||..||++||..+
T Consensus 2 ~k~~Wt~eED~~L~~~v~~~G~---~~W~~Ia~~~~~Rt~~qcr~Rw~~~ 48 (52)
T 1gvd_A 2 IKGPWTKEEDQRLIKLVQKYGP---KRWSVIAKHLKGRIGKQCRERWHNH 48 (52)
T ss_dssp CCCSCCHHHHHHHHHHHHHHCT---TCHHHHHTTSTTCCHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHCc---ChHHHHHHHcCCCCHHHHHHHHHHH
Confidence 5789999999999999999963 4799999999999999999999864
No 23
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.46 E-value=1.2e-13 Score=95.30 Aligned_cols=51 Identities=24% Similarity=0.472 Sum_probs=46.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhCCCCCCCcHHHHHhhCCCCCHHHHHHHHHHHH
Q 047185 149 VGGGGGVWNAGEDIALLNALKAFPKDVPLRWEKIAAAVPGRSKAACMKRFSDLK 202 (214)
Q Consensus 149 ~~~~~~~WT~eED~~L~~al~~~p~~~~~rW~kIA~~vPGRT~~qc~~Ry~~L~ 202 (214)
+.+.+++||+|||.+|..++..|+. .+|..||..|||||+.||++||..++
T Consensus 4 p~~~k~~Wt~eED~~L~~~v~~~G~---~~W~~Ia~~~~~Rt~~qcr~Rw~~~l 54 (60)
T 2d9a_A 4 GSSGKVKWTHEEDEQLRALVRQFGQ---QDWKFLASHFPNRTDQQCQYRWLRVL 54 (60)
T ss_dssp CCCCCSCCCHHHHHHHHHHHHHTCT---TCHHHHHHHCSSSCHHHHHHHHHHTS
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCC---CCHHHHHHHccCCCHHHHHHHHHHHc
Confidence 3578999999999999999999963 59999999999999999999998653
No 24
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.44 E-value=8e-14 Score=100.75 Aligned_cols=53 Identities=23% Similarity=0.440 Sum_probs=49.1
Q ss_pred cCCCCCCHHHHHHHHHHHHhCCCCCCcchhhHHHHcCCCCCHHHHHHHHHHhhh
Q 047185 55 EEEKEWNEEDIEILKKQMVKNPVGKPKRWEVIAEAFNGRHRVESVIKKAKELGE 108 (214)
Q Consensus 55 ~~~~~WT~EE~~lL~kav~kyP~Gt~~RWe~IA~~lg~~RT~~qc~~k~k~l~~ 108 (214)
...++||.||+.+|..|+++||.++++||.+||.+|| +||..||+.||+.|..
T Consensus 16 ~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vp-GRT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 16 SAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVP-SKSKEDCIARYKLLVS 68 (73)
T ss_dssp CSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCS-SSCHHHHHHHHHHHHS
T ss_pred cCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 4678999999999999999999889999999999999 7999999999998754
No 25
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.42 E-value=2.9e-13 Score=93.17 Aligned_cols=48 Identities=27% Similarity=0.506 Sum_probs=44.0
Q ss_pred CCCCCCCHHHHHHHHHHHHhCCCCCCCcHHHHHhhCC-CCCHHHHHHHHHHH
Q 047185 151 GGGGVWNAGEDIALLNALKAFPKDVPLRWEKIAAAVP-GRSKAACMKRFSDL 201 (214)
Q Consensus 151 ~~~~~WT~eED~~L~~al~~~p~~~~~rW~kIA~~vP-GRT~~qc~~Ry~~L 201 (214)
+..++||++||.+|+.++..|+. .+|..||..|| |||+.||++||..+
T Consensus 7 ~~~~~WT~eED~~L~~~v~~~G~---~~W~~IA~~~~~~Rt~~qcr~r~~~~ 55 (58)
T 2elk_A 7 GFDENWGADEELLLIDACETLGL---GNWADIADYVGNARTKEECRDHYLKT 55 (58)
T ss_dssp SCCCCCCHHHHHHHHHHHHHTTT---TCHHHHHHHHCSSCCHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHCc---CCHHHHHHHHCCCCCHHHHHHHHHHH
Confidence 55789999999999999999963 69999999999 99999999999764
No 26
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.42 E-value=3.2e-13 Score=91.06 Aligned_cols=47 Identities=21% Similarity=0.379 Sum_probs=43.6
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCCCCcHHHHHhhCC--CCCHHHHHHHHHHHH
Q 047185 153 GGVWNAGEDIALLNALKAFPKDVPLRWEKIAAAVP--GRSKAACMKRFSDLK 202 (214)
Q Consensus 153 ~~~WT~eED~~L~~al~~~p~~~~~rW~kIA~~vP--GRT~~qc~~Ry~~L~ 202 (214)
.++||+|||.+|..++..|+. .+|..||..|| |||+.||++||..+.
T Consensus 2 r~~WT~eEd~~L~~~v~~~G~---~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~ 50 (53)
T 1w0t_A 2 RQAWLWEEDKNLRSGVRKYGE---GNWSKILLHYKFNNRTSVMLKDRWRTMK 50 (53)
T ss_dssp CCCCCHHHHHHHHHHHHHHCT---TCHHHHHHHSCCSSCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCc---CCHHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence 579999999999999999963 59999999999 999999999998875
No 27
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=99.38 E-value=6.4e-13 Score=100.13 Aligned_cols=52 Identities=21% Similarity=0.403 Sum_probs=48.0
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCCCcchhhHHHHcCCCCCHHHHHHHHHHhhh
Q 047185 56 EEKEWNEEDIEILKKQMVKNPVGKPKRWEVIAEAFNGRHRVESVIKKAKELGE 108 (214)
Q Consensus 56 ~~~~WT~EE~~lL~kav~kyP~Gt~~RWe~IA~~lg~~RT~~qc~~k~k~l~~ 108 (214)
..++||.||+.+|..|+++||.|+++||.+||.+|+ +||.+||..+|+.+.+
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vp-GRT~~q~k~ry~~l~~ 58 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVE-GRTPEEVKKHYEILVE 58 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHST-TCCHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 467999999999999999999999999999999999 6999999999998754
No 28
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.38 E-value=7.7e-13 Score=93.06 Aligned_cols=50 Identities=18% Similarity=0.377 Sum_probs=44.6
Q ss_pred CCCCCCCHHHHHHHHHHHHhCCCCCCCcHHHHHhhCC--CCCHHHHHHHHHHHHH
Q 047185 151 GGGGVWNAGEDIALLNALKAFPKDVPLRWEKIAAAVP--GRSKAACMKRFSDLKR 203 (214)
Q Consensus 151 ~~~~~WT~eED~~L~~al~~~p~~~~~rW~kIA~~vP--GRT~~qc~~Ry~~L~~ 203 (214)
..+++||+|||.+|..++..|+. .+|..||..+| |||+.||++||..|..
T Consensus 9 ~kk~~WT~eED~~L~~~V~~~G~---~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k 60 (64)
T 3sjm_A 9 TKKQKWTVEESEWVKAGVQKYGE---GNWAAISKNYPFVNRTAVMIKDRWRTMKR 60 (64)
T ss_dssp -CCCCCCHHHHHHHHHHHHHHCT---TCHHHHHHHSCCSSCCHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHccCC---CchHHHHhhcCCCCCCHHHHHHHHHHHhc
Confidence 57889999999999999999963 58999999977 9999999999998764
No 29
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.38 E-value=1.4e-13 Score=100.74 Aligned_cols=56 Identities=27% Similarity=0.529 Sum_probs=48.8
Q ss_pred CCCCCCCCHHHHHHHHHHHHhCCCCCCCcHHHHHhhCCCCCHHHHHHHHHHH-HHHHhchh
Q 047185 150 GGGGGVWNAGEDIALLNALKAFPKDVPLRWEKIAAAVPGRSKAACMKRFSDL-KRDFRSSK 209 (214)
Q Consensus 150 ~~~~~~WT~eED~~L~~al~~~p~~~~~rW~kIA~~vPGRT~~qc~~Ry~~L-~~~v~~~k 209 (214)
.....+||++||.+|+.||..|+ .+|.+||.+|||||+.||++||..| ++++...+
T Consensus 15 ~~~~~~WT~eEd~~Ll~~v~~~G----~~W~~IA~~v~~RT~~qcr~r~~~~~i~d~~~~~ 71 (79)
T 2yus_A 15 ASAGREWTEQETLLLLEALEMYK----DDWNKVSEHVGSRTQDECILHFLRLPIEDPYLEN 71 (79)
T ss_dssp SCCSCCCCHHHHHHHHHHHHHSS----SCHHHHHHHHSSCCHHHHHHHHTTSCCCCSSCCC
T ss_pred cccCCCcCHHHHHHHHHHHHHhC----CCHHHHHHHcCCCCHHHHHHHHHHhccccccccc
Confidence 35678999999999999999996 6999999999999999999999877 55554443
No 30
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.37 E-value=9.2e-13 Score=93.47 Aligned_cols=50 Identities=32% Similarity=0.625 Sum_probs=45.7
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhCCCCCCCcHHHHHhhCCCCCHHHHHHHHHHH
Q 047185 149 VGGGGGVWNAGEDIALLNALKAFPKDVPLRWEKIAAAVPGRSKAACMKRFSDL 201 (214)
Q Consensus 149 ~~~~~~~WT~eED~~L~~al~~~p~~~~~rW~kIA~~vPGRT~~qc~~Ry~~L 201 (214)
+.+..++||++||.+|..++..|+. .+|..||..|||||..||++||..+
T Consensus 5 ~~~k~~~Wt~eED~~L~~~v~~~G~---~~W~~Ia~~l~~Rt~~qcr~Rw~~~ 54 (70)
T 2dim_A 5 SSGKGGVWRNTEDEILKAAVMKYGK---NQWSRIASLLHRKSAKQCKARWYEW 54 (70)
T ss_dssp SCSTTCCCCHHHHHHHHHHHHHTCS---SCHHHHHHHSTTCCHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCc---CCHHHHHHHhcCCCHHHHHHHHHHH
Confidence 3578899999999999999999963 6999999999999999999999864
No 31
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.37 E-value=2.8e-12 Score=111.10 Aligned_cols=134 Identities=18% Similarity=0.279 Sum_probs=90.8
Q ss_pred cCCCCCCHHHHHHHHHHHHhCCCC--CCcchhhHHHHcCCCCCHHHHHHHHHHhhhcccC---CchhHHHHhhhhcccch
Q 047185 55 EEEKEWNEEDIEILKKQMVKNPVG--KPKRWEVIAEAFNGRHRVESVIKKAKELGEKKID---DSDSYNQFLKNRKAIDM 129 (214)
Q Consensus 55 ~~~~~WT~EE~~lL~kav~kyP~G--t~~RWe~IA~~lg~~RT~~qc~~k~k~l~~~~~~---~~~~~~~~l~~~~~l~~ 129 (214)
++.++||.|||++|..++.+||-. +..-|..||.+|+ +||.-||..+|+.++..... +.+..+.. .
T Consensus 6 ~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~Lp-GRT~nsIRnRw~~~L~~~ln~vy~~ded~~L--------i 76 (246)
T 1ign_A 6 HNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVP-NHTGNSIRHRFRVYLSKRLEYVYEVDKFGKL--------V 76 (246)
T ss_dssp --CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTST-TSCHHHHHHHHHHTTGGGCCCEECBCTTSCB--------C
T ss_pred CCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcC-CCCHHHHHHHHHHHHhhhcccccccCcchhh--------h
Confidence 467899999999999999999641 1112999999999 79999999999987654321 00000000 0
Q ss_pred hhhhccccccccccccc--ccCCCCCCCCCHHHHHHHHHHHHh-C-----C------C----------------------
Q 047185 130 RVVQENCEDSKKESQEN--VVVGGGGGVWNAGEDIALLNALKA-F-----P------K---------------------- 173 (214)
Q Consensus 130 r~~~~~~~~~~s~~~~~--~~~~~~~~~WT~eED~~L~~al~~-~-----p------~---------------------- 173 (214)
+... +.+.. .++..-+..||++||-.|...+.. | . .
T Consensus 77 ~d~~--------Gn~ikis~lp~siK~rftaeeDy~L~~~i~~~f~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~ 148 (246)
T 1ign_A 77 RDDD--------GNLIKTKVLPPSIKRKFSADEDYTLAIAVKKQFYRDLFQIDPDTGRSLITDEDTPTAIARRNMTMDPN 148 (246)
T ss_dssp BCTT--------SCBCEESSCCCCSCCCCCHHHHHHHHHHHHHHHHHHHHCBCSSSCCBCC-------------------
T ss_pred hccC--------CCceeeeccCccccCccchhccHHHHHHHHHHHhhhhhhcCccccccccccccchhhhhhhhcccCcc
Confidence 0000 11111 223334678999999999999877 2 0 0
Q ss_pred -----------------CCC---CcHHHHHhhCCCCCHHHHHHHHHHHHHHH
Q 047185 174 -----------------DVP---LRWEKIAAAVPGRSKAACMKRFSDLKRDF 205 (214)
Q Consensus 174 -----------------~~~---~rW~kIA~~vPGRT~~qc~~Ry~~L~~~v 205 (214)
.++ ..|..||..+|++|....++||..++...
T Consensus 149 ~~~~~~~~f~~~~~~~~~gp~~~~~fk~ia~~~P~HT~~SWRdRyrKfl~~~ 200 (246)
T 1ign_A 149 HVPGSEPNFAAYRTQSRRGPIAREFFKHFAEEHAAHTENAWRDRFRKFLLAY 200 (246)
T ss_dssp ------------CCCCCCCCCCTTHHHHHHHHTTTSCHHHHHHHHHHTHHHH
T ss_pred ccccCCcchhhhccccccCcchHHHHHHHHHHCCCCChhhHHHHHHHHHhhc
Confidence 011 28999999999999999999998765543
No 32
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.35 E-value=1.9e-12 Score=91.66 Aligned_cols=51 Identities=20% Similarity=0.356 Sum_probs=46.1
Q ss_pred CCCCCCCCHHHHHHHHHHHHhCCCCCCCcHHHHHhhCC--CCCHHHHHHHHHHHHH
Q 047185 150 GGGGGVWNAGEDIALLNALKAFPKDVPLRWEKIAAAVP--GRSKAACMKRFSDLKR 203 (214)
Q Consensus 150 ~~~~~~WT~eED~~L~~al~~~p~~~~~rW~kIA~~vP--GRT~~qc~~Ry~~L~~ 203 (214)
....++||+|||.+|..++..|+. .+|..||..|| |||..||++||..++.
T Consensus 7 ~~~r~~WT~eED~~L~~~v~~~G~---~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~ 59 (69)
T 1ity_A 7 ARKRQAWLWEEDKNLRSGVRKYGE---GNWSKILLHYKFNNRTSVMLKDRWRTMKK 59 (69)
T ss_dssp SSSCCCCCHHHHHHHHHHHHHHCS---SCHHHHHHHSCCSSCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCC---CcHHHHHHHcCcCCCCHHHHHHHHHHHcC
Confidence 467899999999999999999963 59999999999 9999999999987653
No 33
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=99.34 E-value=1.3e-13 Score=99.56 Aligned_cols=48 Identities=17% Similarity=0.312 Sum_probs=43.4
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCCCcchhhHHHHcCCCCCHHHHHHHHH
Q 047185 56 EEKEWNEEDIEILKKQMVKNPVGKPKRWEVIAEAFNGRHRVESVIKKAK 104 (214)
Q Consensus 56 ~~~~WT~EE~~lL~kav~kyP~Gt~~RWe~IA~~lg~~RT~~qc~~k~k 104 (214)
.+..||.+|+.+|.+|+++||.||++||++||++|| +||++||+.+|.
T Consensus 19 ss~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~Vp-GKT~eEVk~hY~ 66 (74)
T 4eef_G 19 SGRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVK-GRTPEEVKKHYE 66 (74)
T ss_dssp ---CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSC-SSCHHHHHGGGC
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcC-CCCHHHHHHHHH
Confidence 467899999999999999999999999999999999 699999999884
No 34
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.34 E-value=7.9e-13 Score=95.52 Aligned_cols=50 Identities=24% Similarity=0.252 Sum_probs=46.0
Q ss_pred CCCCCCCCHHHHHHHHHHHHhCCCCCCCcHHHHHhhCCCCCHHHHHHHHHHHHHH
Q 047185 150 GGGGGVWNAGEDIALLNALKAFPKDVPLRWEKIAAAVPGRSKAACMKRFSDLKRD 204 (214)
Q Consensus 150 ~~~~~~WT~eED~~L~~al~~~p~~~~~rW~kIA~~vPGRT~~qc~~Ry~~L~~~ 204 (214)
.+.+++||+|||.+|..++..|+ .+|..||..| |||+.||++||..|.+.
T Consensus 20 ~i~k~~wT~EED~~L~~l~~~~G----~kW~~IA~~l-gRt~~q~knRw~~L~~~ 69 (73)
T 2llk_A 20 RNHVGKYTPEEIEKLKELRIKHG----NDWATIGAAL-GRSASSVKDRCRLMKDT 69 (73)
T ss_dssp CCCCCSSCHHHHHHHHHHHHHHS----SCHHHHHHHH-TSCHHHHHHHHHHCSCC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHC----CCHHHHHHHh-CCCHHHHHHHHHHHHHH
Confidence 68899999999999999999995 5799999999 99999999999987543
No 35
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.30 E-value=3e-12 Score=91.85 Aligned_cols=52 Identities=19% Similarity=0.461 Sum_probs=45.5
Q ss_pred cCCCCCCHHHHHHHHHHHHhCCCCC--CcchhhHHHHcCCCCCHHHHHHHHHHhh
Q 047185 55 EEEKEWNEEDIEILKKQMVKNPVGK--PKRWEVIAEAFNGRHRVESVIKKAKELG 107 (214)
Q Consensus 55 ~~~~~WT~EE~~lL~kav~kyP~Gt--~~RWe~IA~~lg~~RT~~qc~~k~k~l~ 107 (214)
...++||.|||.+|.++|.+|+.++ +.+|..||.+|+ +||..||..||+.++
T Consensus 6 ~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~-~Rt~~qcr~r~~~~l 59 (75)
T 2yum_A 6 SGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELG-NRTAKQVASQVQKYF 59 (75)
T ss_dssp CCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHS-SSCHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 3578999999999999999997655 379999999999 799999999996553
No 36
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.26 E-value=1.2e-11 Score=85.02 Aligned_cols=49 Identities=12% Similarity=0.170 Sum_probs=43.3
Q ss_pred cCCCCCCHHHHHHHHHHHHhCCCCCCcchhhHHHHcCCCCCHHHHHHHHHHh
Q 047185 55 EEEKEWNEEDIEILKKQMVKNPVGKPKRWEVIAEAFNGRHRVESVIKKAKEL 106 (214)
Q Consensus 55 ~~~~~WT~EE~~lL~kav~kyP~Gt~~RWe~IA~~lg~~RT~~qc~~k~k~l 106 (214)
...++||.|||.+|.++|.+|+ . .+|..||.+|+++||..||..||..+
T Consensus 7 ~~~~~WT~eED~~L~~~v~~~G--~-~~W~~IA~~~~~~Rt~~qcr~r~~~~ 55 (58)
T 2elk_A 7 GFDENWGADEELLLIDACETLG--L-GNWADIADYVGNARTKEECRDHYLKT 55 (58)
T ss_dssp SCCCCCCHHHHHHHHHHHHHTT--T-TCHHHHHHHHCSSCCHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHC--c-CCHHHHHHHHCCCCCHHHHHHHHHHH
Confidence 3467899999999999999994 3 58999999998679999999999765
No 37
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=98.91 E-value=5e-13 Score=99.54 Aligned_cols=51 Identities=18% Similarity=0.200 Sum_probs=46.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhCCCCCCCcHHHHHhhCCCCCHHHHHHHHHHHHH
Q 047185 149 VGGGGGVWNAGEDIALLNALKAFPKDVPLRWEKIAAAVPGRSKAACMKRFSDLKR 203 (214)
Q Consensus 149 ~~~~~~~WT~eED~~L~~al~~~p~~~~~rW~kIA~~vPGRT~~qc~~Ry~~L~~ 203 (214)
+.+..++||++||.+|+.++..|+ .+|..||.+|||||+.||++||..+..
T Consensus 12 p~~~~~~WT~eEd~~l~~~~~~~G----~~W~~IA~~l~gRt~~q~k~r~~~~lr 62 (89)
T 2ltp_A 12 ENLYFQGWTEEEMGTAKKGLLEHG----RNWSAIARMVGSKTVSQCKNFYFNYKK 62 (89)
Confidence 357899999999999999999995 589999999999999999999976543
No 38
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.24 E-value=1.4e-11 Score=85.10 Aligned_cols=49 Identities=12% Similarity=0.201 Sum_probs=43.8
Q ss_pred cCCCCCCHHHHHHHHHHHHhCCCCCCcchhhHHHHcCCCCCHHHHHHHHHHhh
Q 047185 55 EEEKEWNEEDIEILKKQMVKNPVGKPKRWEVIAEAFNGRHRVESVIKKAKELG 107 (214)
Q Consensus 55 ~~~~~WT~EE~~lL~kav~kyP~Gt~~RWe~IA~~lg~~RT~~qc~~k~k~l~ 107 (214)
...++||.|||.+|.++|.+|+ . ++|..||.+|+ +||..||..||..++
T Consensus 6 ~~~~~WT~eED~~L~~~v~~~G--~-~~W~~Ia~~~~-~Rt~~qcr~r~~~~l 54 (60)
T 1x41_A 6 SGDPSWTAQEEMALLEAVMDCG--F-GNWQDVANQMC-TKTKEECEKHYMKYF 54 (60)
T ss_dssp CCCSSSCHHHHHHHHHHHHHTC--T-TCHHHHHHHHT-TSCHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHHHC--c-CcHHHHHHHhC-CCCHHHHHHHHHHHc
Confidence 4678999999999999999994 3 58999999999 699999999998764
No 39
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.24 E-value=1.1e-11 Score=82.88 Aligned_cols=48 Identities=23% Similarity=0.359 Sum_probs=42.8
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCCCcchhhHHHHcCCCCCHHHHHHHHHHhh
Q 047185 56 EEKEWNEEDIEILKKQMVKNPVGKPKRWEVIAEAFNGRHRVESVIKKAKELG 107 (214)
Q Consensus 56 ~~~~WT~EE~~lL~kav~kyP~Gt~~RWe~IA~~lg~~RT~~qc~~k~k~l~ 107 (214)
+.++||.|||.+|..+|.+|+ . .+|..||.+|+ +||..||..+|..++
T Consensus 2 ~~~~Wt~eED~~L~~~v~~~G--~-~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L 49 (52)
T 1guu_A 2 GKTRWTREEDEKLKKLVEQNG--T-DDWKVIANYLP-NRTDVQCQHRWQKVL 49 (52)
T ss_dssp -CCCCCHHHHHHHHHHHHHHC--S-SCHHHHHHTST-TCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhC--C-CCHHHHHHHcC-CCCHHHHHHHHHHHc
Confidence 578999999999999999994 3 48999999998 799999999998764
No 40
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.22 E-value=1.3e-11 Score=82.54 Aligned_cols=48 Identities=23% Similarity=0.290 Sum_probs=43.1
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCCCcchhhHHHHcCCCCCHHHHHHHHHHhh
Q 047185 56 EEKEWNEEDIEILKKQMVKNPVGKPKRWEVIAEAFNGRHRVESVIKKAKELG 107 (214)
Q Consensus 56 ~~~~WT~EE~~lL~kav~kyP~Gt~~RWe~IA~~lg~~RT~~qc~~k~k~l~ 107 (214)
+.++||.|||.+|.++|.+|+ . .+|..||.+|+ +||..||..+|..++
T Consensus 2 ~k~~Wt~eED~~L~~~v~~~G--~-~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L 49 (52)
T 1gvd_A 2 IKGPWTKEEDQRLIKLVQKYG--P-KRWSVIAKHLK-GRIGKQCRERWHNHL 49 (52)
T ss_dssp CCCSCCHHHHHHHHHHHHHHC--T-TCHHHHHTTST-TCCHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHHHHHC--c-ChHHHHHHHcC-CCCHHHHHHHHHHHc
Confidence 578999999999999999994 3 47999999998 799999999998764
No 41
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.21 E-value=2.6e-11 Score=83.40 Aligned_cols=50 Identities=14% Similarity=0.269 Sum_probs=44.3
Q ss_pred cCCCCCCHHHHHHHHHHHHhCCCCCCcchhhHHHHcCCCCCHHHHHHHHHHhhh
Q 047185 55 EEEKEWNEEDIEILKKQMVKNPVGKPKRWEVIAEAFNGRHRVESVIKKAKELGE 108 (214)
Q Consensus 55 ~~~~~WT~EE~~lL~kav~kyP~Gt~~RWe~IA~~lg~~RT~~qc~~k~k~l~~ 108 (214)
.+.++||.|||.+|.++|.+|+ + ++|..||.+|+ +||..||..+|..++.
T Consensus 6 ~~k~~Wt~eED~~L~~~v~~~G--~-~~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~ 55 (60)
T 2d9a_A 6 SGKVKWTHEEDEQLRALVRQFG--Q-QDWKFLASHFP-NRTDQQCQYRWLRVLS 55 (60)
T ss_dssp CCCSCCCHHHHHHHHHHHHHTC--T-TCHHHHHHHCS-SSCHHHHHHHHHHTSC
T ss_pred CCCCCCCHHHHHHHHHHHHHhC--C-CCHHHHHHHcc-CCCHHHHHHHHHHHcC
Confidence 4678999999999999999994 3 58999999998 7999999999987653
No 42
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.19 E-value=2.1e-11 Score=92.18 Aligned_cols=48 Identities=25% Similarity=0.508 Sum_probs=44.1
Q ss_pred CCCCCCCHHHHHHHHHHHHhCCCCCCCcHHHHHhhCCCCCHHHHHHHHHHH
Q 047185 151 GGGGVWNAGEDIALLNALKAFPKDVPLRWEKIAAAVPGRSKAACMKRFSDL 201 (214)
Q Consensus 151 ~~~~~WT~eED~~L~~al~~~p~~~~~rW~kIA~~vPGRT~~qc~~Ry~~L 201 (214)
+.+++||++||.+|..++..|+. .+|..||..|||||..||++||..+
T Consensus 2 l~k~~WT~eED~~L~~~v~~~g~---~~W~~Ia~~l~~Rt~~qcr~Rw~~~ 49 (105)
T 1gv2_A 2 LIKGPWTKEEDQRVIKLVQKYGP---KRWSVIAKHLKGRIGKQCRERWHNH 49 (105)
T ss_dssp CCCSCCCHHHHHHHHHHHHHHCT---TCHHHHHTTSTTCCHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHHhCC---CcHHHHhhhhcCCCHHHHHHHHHhc
Confidence 56889999999999999999964 5899999999999999999999864
No 43
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.18 E-value=3.7e-11 Score=84.43 Aligned_cols=55 Identities=13% Similarity=0.312 Sum_probs=43.9
Q ss_pred hhhccCCCCCCHHHHHHHHHHHHhCCCCCCcchhhHHHHcC-CCCCHHHHHHHHHHhhh
Q 047185 51 QRKSEEEKEWNEEDIEILKKQMVKNPVGKPKRWEVIAEAFN-GRHRVESVIKKAKELGE 108 (214)
Q Consensus 51 ~~~~~~~~~WT~EE~~lL~kav~kyP~Gt~~RWe~IA~~lg-~~RT~~qc~~k~k~l~~ 108 (214)
..++...+.||.|||++|.++|++|+ . .+|..||.+++ .+||..||..||+.+..
T Consensus 5 ~~~~~kk~~WT~eED~~L~~~V~~~G--~-~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k 60 (64)
T 3sjm_A 5 TTNITKKQKWTVEESEWVKAGVQKYG--E-GNWAAISKNYPFVNRTAVMIKDRWRTMKR 60 (64)
T ss_dssp -----CCCCCCHHHHHHHHHHHHHHC--T-TCHHHHHHHSCCSSCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHccC--C-CchHHHHhhcCCCCCCHHHHHHHHHHHhc
Confidence 44556789999999999999999994 3 47999999865 36999999999988754
No 44
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.18 E-value=2.3e-11 Score=88.89 Aligned_cols=47 Identities=17% Similarity=0.380 Sum_probs=42.9
Q ss_pred cCCCCCCHHHHHHHHHHHHhCCCCCCcchhhHHHHcCCCCCHHHHHHHHHHh
Q 047185 55 EEEKEWNEEDIEILKKQMVKNPVGKPKRWEVIAEAFNGRHRVESVIKKAKEL 106 (214)
Q Consensus 55 ~~~~~WT~EE~~lL~kav~kyP~Gt~~RWe~IA~~lg~~RT~~qc~~k~k~l 106 (214)
...++||.||+.+|.++|++|+ ++|..||.+|+ +||..||+.||..+
T Consensus 16 ~~~~~WT~eEd~~Ll~~v~~~G----~~W~~IA~~v~-~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 16 SAGREWTEQETLLLLEALEMYK----DDWNKVSEHVG-SRTQDECILHFLRL 62 (79)
T ss_dssp CCSCCCCHHHHHHHHHHHHHSS----SCHHHHHHHHS-SCCHHHHHHHHTTS
T ss_pred ccCCCcCHHHHHHHHHHHHHhC----CCHHHHHHHcC-CCCHHHHHHHHHHh
Confidence 4578999999999999999995 68999999999 69999999999765
No 45
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.15 E-value=7.6e-11 Score=81.82 Aligned_cols=46 Identities=17% Similarity=0.239 Sum_probs=42.4
Q ss_pred CCCCCCCHHHHHHHHHHHHhCCCCCCCcHHHHHhhCCCCCHHHHHHHHHH
Q 047185 151 GGGGVWNAGEDIALLNALKAFPKDVPLRWEKIAAAVPGRSKAACMKRFSD 200 (214)
Q Consensus 151 ~~~~~WT~eED~~L~~al~~~p~~~~~rW~kIA~~vPGRT~~qc~~Ry~~ 200 (214)
....+||++|+++|+.++..|| .+|.+||.+|||||..||+++|..
T Consensus 10 ~~~~~WT~eE~~~F~~~~~~~g----k~w~~Ia~~l~~rt~~~~v~~Yy~ 55 (61)
T 2eqr_A 10 QFMNVWTDHEKEIFKDKFIQHP----KNFGLIASYLERKSVPDCVLYYYL 55 (61)
T ss_dssp SCCCSCCHHHHHHHHHHHHHST----TCHHHHHHHCTTSCHHHHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHHHHhC----CCHHHHHHHcCCCCHHHHHHHHHH
Confidence 4568999999999999999996 599999999999999999999954
No 46
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.14 E-value=5.2e-11 Score=90.65 Aligned_cols=46 Identities=17% Similarity=0.383 Sum_probs=42.3
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCCCCcHHHHHhhCCCCCHHHHHHHHHHH
Q 047185 153 GGVWNAGEDIALLNALKAFPKDVPLRWEKIAAAVPGRSKAACMKRFSDL 201 (214)
Q Consensus 153 ~~~WT~eED~~L~~al~~~p~~~~~rW~kIA~~vPGRT~~qc~~Ry~~L 201 (214)
++.||+|||.+|..++..|+. .+|..||..|||||..||++||...
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~---~~W~~Ia~~~~~Rt~~qcr~Rw~~~ 46 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGA---KDWIRISQLMITRNPRQCRERWNNY 46 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCS---SCHHHHHHHTTTSCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCC---CCHHHHhhhcCCCCHHHHHHHHHHH
Confidence 468999999999999999973 5899999999999999999999764
No 47
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.12 E-value=6.9e-11 Score=92.52 Aligned_cols=49 Identities=24% Similarity=0.416 Sum_probs=45.0
Q ss_pred CCCCCCCCHHHHHHHHHHHHhCCCCCCCcHHHHHhhCCCCCHHHHHHHHHHHH
Q 047185 150 GGGGGVWNAGEDIALLNALKAFPKDVPLRWEKIAAAVPGRSKAACMKRFSDLK 202 (214)
Q Consensus 150 ~~~~~~WT~eED~~L~~al~~~p~~~~~rW~kIA~~vPGRT~~qc~~Ry~~L~ 202 (214)
...+++||+|||.+|..++..|+ .+|..||..|||||..||++||...+
T Consensus 8 ~~kk~~WT~eED~~L~~~v~~~G----~~W~~Ia~~~~~Rt~~qcr~Rw~~~l 56 (126)
T 3osg_A 8 AAKKQKFTPEEDEMLKRAVAQHG----SDWKMIAATFPNRNARQCRDRWKNYL 56 (126)
T ss_dssp BCSSCCCCHHHHHHHHHHHHHHT----TCHHHHHHTCTTCCHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHHhC----CCHHHHHHHcCCCCHHHHHHHHhhhc
Confidence 47889999999999999999995 49999999999999999999998643
No 48
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.12 E-value=1e-10 Score=78.61 Aligned_cols=49 Identities=12% Similarity=0.203 Sum_probs=43.1
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCCCcchhhHHHHcCC-CCCHHHHHHHHHHhhh
Q 047185 57 EKEWNEEDIEILKKQMVKNPVGKPKRWEVIAEAFNG-RHRVESVIKKAKELGE 108 (214)
Q Consensus 57 ~~~WT~EE~~lL~kav~kyP~Gt~~RWe~IA~~lg~-~RT~~qc~~k~k~l~~ 108 (214)
.++||.|||.+|..+|.+|+ . ++|..||..|+. +||..||..+|..+..
T Consensus 2 r~~WT~eEd~~L~~~v~~~G--~-~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k 51 (53)
T 1w0t_A 2 RQAWLWEEDKNLRSGVRKYG--E-GNWSKILLHYKFNNRTSVMLKDRWRTMKK 51 (53)
T ss_dssp CCCCCHHHHHHHHHHHHHHC--T-TCHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHC--c-CCHHHHHHHcCCCCCCHHHHHHHHHHHHc
Confidence 57999999999999999994 3 489999999973 4999999999987753
No 49
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.10 E-value=1.5e-10 Score=82.47 Aligned_cols=49 Identities=20% Similarity=0.364 Sum_probs=43.9
Q ss_pred cCCCCCCHHHHHHHHHHHHhCCCCCCcchhhHHHHcCCCCCHHHHHHHHHHhhh
Q 047185 55 EEEKEWNEEDIEILKKQMVKNPVGKPKRWEVIAEAFNGRHRVESVIKKAKELGE 108 (214)
Q Consensus 55 ~~~~~WT~EE~~lL~kav~kyP~Gt~~RWe~IA~~lg~~RT~~qc~~k~k~l~~ 108 (214)
.+.++||.||+.+|.+++.+|+ . +|..||.+|+ +||..||..+|+.++.
T Consensus 7 ~~~~~WT~eEd~~l~~~~~~~G--~--~W~~Ia~~~~-~Rt~~q~k~r~~~~l~ 55 (72)
T 2cu7_A 7 GYSVKWTIEEKELFEQGLAKFG--R--RWTKISKLIG-SRTVLQVKSYARQYFK 55 (72)
T ss_dssp SCCCCCCHHHHHHHHHHHHHTC--S--CHHHHHHHHS-SSCHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHHC--c--CHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 4678999999999999999994 4 8999999999 7999999999987643
No 50
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.07 E-value=8.3e-11 Score=92.54 Aligned_cols=47 Identities=23% Similarity=0.422 Sum_probs=42.7
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCCCCcHHHHHhhCCCCCHHHHHHHHHHHH
Q 047185 153 GGVWNAGEDIALLNALKAFPKDVPLRWEKIAAAVPGRSKAACMKRFSDLK 202 (214)
Q Consensus 153 ~~~WT~eED~~L~~al~~~p~~~~~rW~kIA~~vPGRT~~qc~~Ry~~L~ 202 (214)
+++||+|||.+|..++..|+. .+|..||..|||||..||++||...+
T Consensus 2 Kg~Wt~eED~~L~~~v~~~g~---~~W~~Ia~~~~~Rt~~qcr~Rw~~~l 48 (131)
T 3zqc_A 2 KGPFTEAEDDLIREYVKENGP---QNWPRITSFLPNRSPKQCRERWFNHL 48 (131)
T ss_dssp CSSCCHHHHHHHHHHHHHHCS---CCGGGGTTSCTTSCHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCc---CCHHHHHHHHCCCCHHHHHHHHhhcc
Confidence 579999999999999999963 58999999999999999999996643
No 51
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.05 E-value=2.5e-10 Score=80.70 Aligned_cols=52 Identities=13% Similarity=0.240 Sum_probs=45.1
Q ss_pred cCCCCCCHHHHHHHHHHHHhCCCCCCcchhhHHHHcCC-CCCHHHHHHHHHHhhhc
Q 047185 55 EEEKEWNEEDIEILKKQMVKNPVGKPKRWEVIAEAFNG-RHRVESVIKKAKELGEK 109 (214)
Q Consensus 55 ~~~~~WT~EE~~lL~kav~kyP~Gt~~RWe~IA~~lg~-~RT~~qc~~k~k~l~~~ 109 (214)
...++||.||+.+|..+|.+| |+ ++|..||.+|+. +||..||..+|..++..
T Consensus 8 ~~r~~WT~eED~~L~~~v~~~--G~-~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p 60 (69)
T 1ity_A 8 RKRQAWLWEEDKNLRSGVRKY--GE-GNWSKILLHYKFNNRTSVMLKDRWRTMKKL 60 (69)
T ss_dssp SSCCCCCHHHHHHHHHHHHHH--CS-SCHHHHHHHSCCSSCCHHHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHHH--CC-CcHHHHHHHcCcCCCCHHHHHHHHHHHcCC
Confidence 367899999999999999999 43 489999999983 59999999999887553
No 52
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.03 E-value=3.7e-10 Score=79.08 Aligned_cols=48 Identities=21% Similarity=0.347 Sum_probs=41.9
Q ss_pred cCCCCCCHHHHHHHHHHHHhCCCCCCcchhhHHHHcCCCCCHHHHHHHHHHhhh
Q 047185 55 EEEKEWNEEDIEILKKQMVKNPVGKPKRWEVIAEAFNGRHRVESVIKKAKELGE 108 (214)
Q Consensus 55 ~~~~~WT~EE~~lL~kav~kyP~Gt~~RWe~IA~~lg~~RT~~qc~~k~k~l~~ 108 (214)
.+.++||.|||.+|.+++..|+ . +|..||. |. +||..||..||..++.
T Consensus 7 ~~k~~WT~eED~~L~~~~~~~g--~--~W~~Ia~-~~-gRt~~qcr~Rw~~~l~ 54 (66)
T 2din_A 7 GKKTEWSREEEEKLLHLAKLMP--T--QWRTIAP-II-GRTAAQCLEHYEFLLD 54 (66)
T ss_dssp SSCCCCCHHHHHHHHHHHHHCT--T--CHHHHHH-HH-SSCHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHcC--C--CHHHHhc-cc-CcCHHHHHHHHHHHhC
Confidence 4678999999999999999995 3 8999999 55 4999999999987754
No 53
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.03 E-value=4e-10 Score=83.12 Aligned_cols=47 Identities=17% Similarity=0.286 Sum_probs=42.8
Q ss_pred CCCCHHHHHHHHHHHHhCCCCCCCcHHHHHhh----CCCCCHHHHHHHHHHHHH
Q 047185 154 GVWNAGEDIALLNALKAFPKDVPLRWEKIAAA----VPGRSKAACMKRFSDLKR 203 (214)
Q Consensus 154 ~~WT~eED~~L~~al~~~p~~~~~rW~kIA~~----vPGRT~~qc~~Ry~~L~~ 203 (214)
.+||+|||.+|..++.+|+. .+|..|+.. +||||..+|++||..|..
T Consensus 1 r~WT~eEd~~L~~gv~k~G~---g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk 51 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGT---GRWRDVKMRAFDNADHRTYVDLKDKWKTLVH 51 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCS---SCHHHHHHHHCTTCTTSCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCC---CCcHHHHHhhccccCCCCHHHHHHHHHHHHH
Confidence 48999999999999999974 499999985 999999999999998765
No 54
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=98.97 E-value=6.2e-10 Score=87.51 Aligned_cols=84 Identities=14% Similarity=0.084 Sum_probs=66.9
Q ss_pred cCCCCCCHHHHHHHHHHHHhCCCCCCcchhhHHHHc----CCCCCHHHHHHHHHHhhhcccCCchhHHHHhhhhcccchh
Q 047185 55 EEEKEWNEEDIEILKKQMVKNPVGKPKRWEVIAEAF----NGRHRVESVIKKAKELGEKKIDDSDSYNQFLKNRKAIDMR 130 (214)
Q Consensus 55 ~~~~~WT~EE~~lL~kav~kyP~Gt~~RWe~IA~~l----g~~RT~~qc~~k~k~l~~~~~~~~~~~~~~l~~~~~l~~r 130 (214)
...++||.||+..|+.+|++|+ . ++|..|+..+ + +||..||..+|+.+..... +.|
T Consensus 15 r~r~~WT~EEd~~L~~gV~k~G--~-G~W~~Ia~~~~~~f~-~RT~v~lKdRWrnllk~~~---------------~~p- 74 (121)
T 2juh_A 15 RIRRPFSVAEVEALVEAVEHLG--T-GRWRDVKMRAFDNAD-HRTYVDLKDKWKTLVHTAS---------------IAP- 74 (121)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHG--G-GCHHHHHHHHCSCCS-SCCSHHHHHHHHHHHHHHH---------------TCS-
T ss_pred CCCCCCCHHHHHHHHHHHHHHC--C-CCHHHHHHHhccccC-CCCHHHHHHHHHHHHhhhc---------------cCC-
Confidence 4678999999999999999994 3 4899999986 5 7999999999988754210 112
Q ss_pred hhhcccccccccccccccCCCCCC-CCCHHHHHHHHHHHHhCCCCCCCcHHH
Q 047185 131 VVQENCEDSKKESQENVVVGGGGG-VWNAGEDIALLNALKAFPKDVPLRWEK 181 (214)
Q Consensus 131 ~~~~~~~~~~s~~~~~~~~~~~~~-~WT~eED~~L~~al~~~p~~~~~rW~k 181 (214)
.+..+ +|+++|+..|..+...+ +++|.+
T Consensus 75 -------------------~~krg~~~p~e~~~rv~~~h~~~----gn~~~~ 103 (121)
T 2juh_A 75 -------------------QQRRGEPVPQDLLDRVLAAHAYW----SQQQGK 103 (121)
T ss_dssp -------------------TTCCCSCCCHHHHHHHHHHHHHH----HHHHCC
T ss_pred -------------------cccCCCCCCHHHHHHHHHHHHHH----ccchhc
Confidence 23445 99999999999999888 467765
No 55
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=98.96 E-value=1.2e-09 Score=85.94 Aligned_cols=79 Identities=15% Similarity=0.122 Sum_probs=62.9
Q ss_pred cCCCCCCHHHHHHHHHHHHhCCCCCCcchhhHHHHc----CCCCCHHHHHHHHHHhhhcccCCchhHHHHhhhhcccchh
Q 047185 55 EEEKEWNEEDIEILKKQMVKNPVGKPKRWEVIAEAF----NGRHRVESVIKKAKELGEKKIDDSDSYNQFLKNRKAIDMR 130 (214)
Q Consensus 55 ~~~~~WT~EE~~lL~kav~kyP~Gt~~RWe~IA~~l----g~~RT~~qc~~k~k~l~~~~~~~~~~~~~~l~~~~~l~~r 130 (214)
...++||.||++.|+.+|++|+ . ++|..|+..+ + +||..||..||+.+.... .++|
T Consensus 29 r~r~~WT~EEd~~L~~gV~k~G--~-g~W~~I~~~~~~~~~-~RT~vdlKdRWrnllk~~---------------~~~p- 88 (122)
T 2roh_A 29 RIRRPFTVAEVELLVEAVEHLG--T-GRWRDVKFRAFENVH-HRTYVDLKDKWKTLVHTA---------------SIAP- 88 (122)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHS--S-SCHHHHHHHHHSSSC-CCCHHHHHHHHHHHHHHH---------------HSCT-
T ss_pred CCCCCCCHHHHHHHHHHHHHHC--C-CChHHHHHHhccccC-CCCHHHHHHHHHHHHhhc---------------cCCc-
Confidence 4688999999999999999994 3 4899999975 5 799999999998875321 1223
Q ss_pred hhhcccccccccccccccCCCCCCCCCHHH-HHHHHHHHHhCC
Q 047185 131 VVQENCEDSKKESQENVVVGGGGGVWNAGE-DIALLNALKAFP 172 (214)
Q Consensus 131 ~~~~~~~~~~s~~~~~~~~~~~~~~WT~eE-D~~L~~al~~~p 172 (214)
.+..+.|+++| +..+..|...|+
T Consensus 89 -------------------~~kr~~~~p~e~~~~v~~~h~~~g 112 (122)
T 2roh_A 89 -------------------QQRRGAPVPQELLDRVLAAQAYWS 112 (122)
T ss_dssp -------------------TTCCCSSCCHHHHHHHHHHHHHHH
T ss_pred -------------------cccCCCCCCHHHHHHHHHHHHHHh
Confidence 35678999999 677888877764
No 56
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=98.90 E-value=2.5e-09 Score=82.16 Aligned_cols=51 Identities=16% Similarity=0.220 Sum_probs=46.1
Q ss_pred CCCCCCCCHHHHHHHHHHHHhCCCCCCCcHHHHHhhC----CCCCHHHHHHHHHHHHH
Q 047185 150 GGGGGVWNAGEDIALLNALKAFPKDVPLRWEKIAAAV----PGRSKAACMKRFSDLKR 203 (214)
Q Consensus 150 ~~~~~~WT~eED~~L~~al~~~p~~~~~rW~kIA~~v----PGRT~~qc~~Ry~~L~~ 203 (214)
....++||+|||.+|..++.+|+. .+|..|+..+ ||||..+|++||..|..
T Consensus 10 rr~r~~WT~EEd~~L~~gV~k~G~---g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk 64 (105)
T 2aje_A 10 RRIRRPFSVAEVEALVQAVEKLGT---GRWRDVKLCAFEDADHRTYVDLKDKWKTLVH 64 (105)
T ss_dssp CCCCCSCCHHHHHHHHHHHHHHCS---SSHHHHHSSSSSSTTCCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCC---CChHHHHHHhccccCCCCHHHHHHHHHHHHh
Confidence 568899999999999999999974 4999999865 89999999999998874
No 57
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=98.87 E-value=2.6e-09 Score=77.04 Aligned_cols=48 Identities=23% Similarity=0.426 Sum_probs=43.1
Q ss_pred cCCCCCCHHHHHHHHHHHHhCCCCCCcchhhHHHHcCCCCCHHHHHHHHHHhhh
Q 047185 55 EEEKEWNEEDIEILKKQMVKNPVGKPKRWEVIAEAFNGRHRVESVIKKAKELGE 108 (214)
Q Consensus 55 ~~~~~WT~EE~~lL~kav~kyP~Gt~~RWe~IA~~lg~~RT~~qc~~k~k~l~~ 108 (214)
++.++||.|||.+|.+++++|+ . +|..||.+| +||..||..+|+.|..
T Consensus 21 i~k~~wT~EED~~L~~l~~~~G--~--kW~~IA~~l--gRt~~q~knRw~~L~~ 68 (73)
T 2llk_A 21 NHVGKYTPEEIEKLKELRIKHG--N--DWATIGAAL--GRSASSVKDRCRLMKD 68 (73)
T ss_dssp CCCCSSCHHHHHHHHHHHHHHS--S--CHHHHHHHH--TSCHHHHHHHHHHCSC
T ss_pred CCCCCCCHHHHHHHHHHHHHHC--C--CHHHHHHHh--CCCHHHHHHHHHHHHH
Confidence 6789999999999999999994 3 599999999 5999999999987753
No 58
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=98.86 E-value=1e-08 Score=91.70 Aligned_cols=147 Identities=16% Similarity=0.142 Sum_probs=99.3
Q ss_pred cCCCCCCHHHHHHHHHHHHhCCCCCCcchhhHHHHcCCCCCHHHHHHHHHHhhhcccCCchhHHHHhhhhcccch---hh
Q 047185 55 EEEKEWNEEDIEILKKQMVKNPVGKPKRWEVIAEAFNGRHRVESVIKKAKELGEKKIDDSDSYNQFLKNRKAIDM---RV 131 (214)
Q Consensus 55 ~~~~~WT~EE~~lL~kav~kyP~Gt~~RWe~IA~~lg~~RT~~qc~~k~k~l~~~~~~~~~~~~~~l~~~~~l~~---r~ 131 (214)
..=+.||..|...+++|+.+| |. ++|+.||..|+ ++|.++|...++-+-.. ......|++++..-...+- +.
T Consensus 108 eGF~~W~rrdf~~Fi~a~~ky--Gr-~~~~~IA~ev~-~Kt~eEV~~Y~~vFw~r-y~ei~d~ek~~~~IE~gE~ki~r~ 182 (304)
T 1ofc_X 108 QGFTAWTKRDFNQFIKANEKY--GR-DDIDNIAKDVE-GKTPEEVIEYNAVFWER-CTELQDIERIMGQIERGEGKIQRR 182 (304)
T ss_dssp SSCTTCCHHHHHHHHHHHHHH--CT-TCHHHHTTSST-TCCHHHHHHHHHHHHHH-GGGCTTHHHHHHHHHHHHHHHHHH
T ss_pred hhhcccCHHHHHHHHHHHHHh--CH-HHHHHHHHHhc-CCCHHHHHHHHHHHHHh-HHHhccHHHHHHHHHHHHHHHHHH
Confidence 344579999999999999999 44 68999999998 79999998777655332 1223455555543211000 00
Q ss_pred hhc--------cccccccccccccc-CCCCCCCCCHHHHHHHHHHHHhCCCCCCCcHHHHH------------hhCCCCC
Q 047185 132 VQE--------NCEDSKKESQENVV-VGGGGGVWNAGEDIALLNALKAFPKDVPLRWEKIA------------AAVPGRS 190 (214)
Q Consensus 132 ~~~--------~~~~~~s~~~~~~~-~~~~~~~WT~eED~~L~~al~~~p~~~~~rW~kIA------------~~vPGRT 190 (214)
... ..-..|-. .-+.. .......||.+||..|+.+|..|+.+.+..|++|. -++-.||
T Consensus 183 ~~~~~~l~~Ki~~~~~P~~-~L~i~y~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRT 261 (304)
T 1ofc_X 183 LSIKKALDQKMSRYRAPFH-QLRLQYGNNKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRT 261 (304)
T ss_dssp HHHHHHHHHHHHTCSSHHH-HCCCCCTTCCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCC
T ss_pred HHHHHHHHHHHHHhcCcHH-HhccccCCCCCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCC
Confidence 000 00000000 00000 12356799999999999999999988889999997 3667899
Q ss_pred HHHHHHHHHHHHHHHhc
Q 047185 191 KAACMKRFSDLKRDFRS 207 (214)
Q Consensus 191 ~~qc~~Ry~~L~~~v~~ 207 (214)
+.++..|...|+..|.+
T Consensus 262 p~el~rRc~tLi~~iek 278 (304)
T 1ofc_X 262 ALELQRRCNTLITLIER 278 (304)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999998876643
No 59
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=98.83 E-value=2.8e-09 Score=83.77 Aligned_cols=51 Identities=16% Similarity=0.215 Sum_probs=46.2
Q ss_pred CCCCCCCCHHHHHHHHHHHHhCCCCCCCcHHHHHhh----CCCCCHHHHHHHHHHHHH
Q 047185 150 GGGGGVWNAGEDIALLNALKAFPKDVPLRWEKIAAA----VPGRSKAACMKRFSDLKR 203 (214)
Q Consensus 150 ~~~~~~WT~eED~~L~~al~~~p~~~~~rW~kIA~~----vPGRT~~qc~~Ry~~L~~ 203 (214)
....++||.|||.+|..++..|+. .+|..|+.. ++|||..+|++||..|+.
T Consensus 14 rr~r~~WT~EEd~~L~~gV~k~G~---G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk 68 (121)
T 2juh_A 14 RRIRRPFSVAEVEALVEAVEHLGT---GRWRDVKMRAFDNADHRTYVDLKDKWKTLVH 68 (121)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHHGG---GCHHHHHHHHCSCCSSCCSHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCC---CCHHHHHHHhccccCCCCHHHHHHHHHHHHh
Confidence 578899999999999999999963 499999987 499999999999998775
No 60
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=98.83 E-value=6.8e-09 Score=72.67 Aligned_cols=49 Identities=18% Similarity=0.296 Sum_probs=45.0
Q ss_pred CCCCCCCHHHHHHHHHHHHhCCCCCCCcHHHHH---hhCCCCCHHHHHHHHHHHHH
Q 047185 151 GGGGVWNAGEDIALLNALKAFPKDVPLRWEKIA---AAVPGRSKAACMKRFSDLKR 203 (214)
Q Consensus 151 ~~~~~WT~eED~~L~~al~~~p~~~~~rW~kIA---~~vPGRT~~qc~~Ry~~L~~ 203 (214)
....+||+|||..|++++.+|+ ..|..|+ .+++|||..++++||..|..
T Consensus 6 ~~r~~WT~EE~~~L~~gV~k~G----~~W~~I~~~y~f~~~RT~VdLKdk~r~L~k 57 (62)
T 1x58_A 6 SGRKDFTKEEVNYLFHGVKTMG----NHWNSILWSFPFQKGRRAVDLAHKYHRLIS 57 (62)
T ss_dssp CCSSSCCHHHHHHHHHHHHHHC----SCHHHHHHHSCCCTTCCHHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHHHh----HhHHHHHHhCCCccCcccchHHHHHHHHHh
Confidence 5788999999999999999995 5999999 68899999999999999864
No 61
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=98.81 E-value=6.3e-09 Score=81.86 Aligned_cols=52 Identities=15% Similarity=0.184 Sum_probs=46.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhCCCCCCCcHHHHHhh----CCCCCHHHHHHHHHHHHH
Q 047185 149 VGGGGGVWNAGEDIALLNALKAFPKDVPLRWEKIAAA----VPGRSKAACMKRFSDLKR 203 (214)
Q Consensus 149 ~~~~~~~WT~eED~~L~~al~~~p~~~~~rW~kIA~~----vPGRT~~qc~~Ry~~L~~ 203 (214)
.....++||.|||.+|..++.+|+. .+|..|+.. ++|||..+|++||..|..
T Consensus 27 ~rr~r~~WT~EEd~~L~~gV~k~G~---g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk 82 (122)
T 2roh_A 27 QRRIRRPFTVAEVELLVEAVEHLGT---GRWRDVKFRAFENVHHRTYVDLKDKWKTLVH 82 (122)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHSS---SCHHHHHHHHHSSSCCCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCC---CChHHHHHHhccccCCCCHHHHHHHHHHHHh
Confidence 3567899999999999999999974 499999986 499999999999998874
No 62
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.80 E-value=8.8e-09 Score=71.32 Aligned_cols=46 Identities=22% Similarity=0.404 Sum_probs=41.1
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCCCcchhhHHHHcCCCCCHHHHHHHHHHh
Q 047185 56 EEKEWNEEDIEILKKQMVKNPVGKPKRWEVIAEAFNGRHRVESVIKKAKEL 106 (214)
Q Consensus 56 ~~~~WT~EE~~lL~kav~kyP~Gt~~RWe~IA~~lg~~RT~~qc~~k~k~l 106 (214)
...+||+||+.+|..++.+|| .+|..||.+|+ +||+.||+.+|-..
T Consensus 11 ~~~~WT~eE~~~F~~~~~~~g----k~w~~Ia~~l~-~rt~~~~v~~Yy~~ 56 (61)
T 2eqr_A 11 FMNVWTDHEKEIFKDKFIQHP----KNFGLIASYLE-RKSVPDCVLYYYLT 56 (61)
T ss_dssp CCCSCCHHHHHHHHHHHHHST----TCHHHHHHHCT-TSCHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHhC----CCHHHHHHHcC-CCCHHHHHHHHHHh
Confidence 457999999999999999995 48999999999 79999999998543
No 63
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=98.80 E-value=3.1e-09 Score=92.04 Aligned_cols=53 Identities=17% Similarity=0.298 Sum_probs=43.6
Q ss_pred CCCCCCCCHHHHHHHHHHHHhCCCC-CCCc-HHHHHhhCCCCCHHHHHHHHHHHH
Q 047185 150 GGGGGVWNAGEDIALLNALKAFPKD-VPLR-WEKIAAAVPGRSKAACMKRFSDLK 202 (214)
Q Consensus 150 ~~~~~~WT~eED~~L~~al~~~p~~-~~~r-W~kIA~~vPGRT~~qc~~Ry~~L~ 202 (214)
...+++||+|||..|..++.+||.. .++. |..||.+|||||+.+|++||..++
T Consensus 5 ~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L 59 (246)
T 1ign_A 5 SHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYL 59 (246)
T ss_dssp ---CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTT
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 4678899999999999999999752 1233 999999999999999999998743
No 64
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=98.23 E-value=9.5e-10 Score=81.70 Aligned_cols=49 Identities=20% Similarity=0.367 Sum_probs=43.9
Q ss_pred cCCCCCCHHHHHHHHHHHHhCCCCCCcchhhHHHHcCCCCCHHHHHHHHHHhhh
Q 047185 55 EEEKEWNEEDIEILKKQMVKNPVGKPKRWEVIAEAFNGRHRVESVIKKAKELGE 108 (214)
Q Consensus 55 ~~~~~WT~EE~~lL~kav~kyP~Gt~~RWe~IA~~lg~~RT~~qc~~k~k~l~~ 108 (214)
.+.++||.||+.+|..++.+| |. +|..||.+|+ +||..||..+|..++.
T Consensus 14 ~~~~~WT~eEd~~l~~~~~~~--G~--~W~~IA~~l~-gRt~~q~k~r~~~~lr 62 (89)
T 2ltp_A 14 LYFQGWTEEEMGTAKKGLLEH--GR--NWSAIARMVG-SKTVSQCKNFYFNYKK 62 (89)
Confidence 467899999999999999999 44 7999999999 7999999999987654
No 65
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=98.66 E-value=1.6e-08 Score=95.21 Aligned_cols=44 Identities=14% Similarity=0.369 Sum_probs=40.9
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCCCCcHHHHHhhCCCCCHHHHHHHHHH
Q 047185 153 GGVWNAGEDIALLNALKAFPKDVPLRWEKIAAAVPGRSKAACMKRFSD 200 (214)
Q Consensus 153 ~~~WT~eED~~L~~al~~~p~~~~~rW~kIA~~vPGRT~~qc~~Ry~~ 200 (214)
...||.+|..+|+++|.+|+ ..|..||..|++||..||+.+|..
T Consensus 380 ~~~WT~eE~~~f~~al~~yG----kdw~~IA~~VgTKT~~Qvk~fy~~ 423 (482)
T 2xag_B 380 NARWTTEEQLLAVQAIRKYG----RDFQAISDVIGNKSVVQVKNFFVN 423 (482)
T ss_dssp CSCCCHHHHHHHHHHHHHHT----TCHHHHHHHHSSCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHC----cCHHHHHHHhCCCCHHHHHHHHHH
Confidence 57999999999999999996 489999999999999999999943
No 66
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=98.60 E-value=6.2e-08 Score=71.35 Aligned_cols=47 Identities=15% Similarity=0.216 Sum_probs=41.4
Q ss_pred CCCCHHHHHHHHHHHHhCCCCCCcchhhHHHH----cCCCCCHHHHHHHHHHhhh
Q 047185 58 KEWNEEDIEILKKQMVKNPVGKPKRWEVIAEA----FNGRHRVESVIKKAKELGE 108 (214)
Q Consensus 58 ~~WT~EE~~lL~kav~kyP~Gt~~RWe~IA~~----lg~~RT~~qc~~k~k~l~~ 108 (214)
++||.||+..|+.+|++|+. ++|..|+.. |+ +||..||..+|+.+..
T Consensus 1 r~WT~eEd~~L~~gv~k~G~---g~W~~I~~~~~~~~~-~RT~~~lKdrWrnllk 51 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGT---GRWRDVKMRAFDNAD-HRTYVDLKDKWKTLVH 51 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCS---SCHHHHHHHHCTTCT-TSCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCC---CCcHHHHHhhccccC-CCCHHHHHHHHHHHHH
Confidence 58999999999999999953 489999996 76 7999999999988754
No 67
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.57 E-value=4.8e-08 Score=84.02 Aligned_cols=46 Identities=13% Similarity=0.330 Sum_probs=42.3
Q ss_pred CCCCCCCHHHHHHHHHHHHhCCCCCCCcHHHHHhhCCCCCHHHHHHHHHH
Q 047185 151 GGGGVWNAGEDIALLNALKAFPKDVPLRWEKIAAAVPGRSKAACMKRFSD 200 (214)
Q Consensus 151 ~~~~~WT~eED~~L~~al~~~p~~~~~rW~kIA~~vPGRT~~qc~~Ry~~ 200 (214)
....+||.+|+.+|++|+..|+ .+|..||..|||||..||+++|..
T Consensus 131 k~s~~WTeEE~~lFleAl~kYG----KDW~~IAk~VgTKT~~QcKnfY~~ 176 (235)
T 2iw5_B 131 KCNARWTTEEQLLAVQAIRKYG----RDFQAISDVIGNKSVVQVKNFFVN 176 (235)
T ss_dssp CCCSSCCHHHHHHHHHHHHHHS----SCHHHHHHHHSSCCHHHHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHHHHHC----cCHHHHHHHcCCCCHHHHHHHHHH
Confidence 4577999999999999999996 589999999999999999999964
No 68
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.53 E-value=1.8e-07 Score=65.21 Aligned_cols=47 Identities=15% Similarity=0.353 Sum_probs=42.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhCCCCCCCcHHHHHh-hCCCCCHHHHHHHHH
Q 047185 149 VGGGGGVWNAGEDIALLNALKAFPKDVPLRWEKIAA-AVPGRSKAACMKRFS 199 (214)
Q Consensus 149 ~~~~~~~WT~eED~~L~~al~~~p~~~~~rW~kIA~-~vPGRT~~qc~~Ry~ 199 (214)
+......||++|-++|+++|..|++ .|.+|+. +||+||..||...|-
T Consensus 5 p~~~~~~WT~eE~~~Fe~~l~~yGK----df~~I~~~~v~~Kt~~~~v~fYY 52 (63)
T 2yqk_A 5 SSGIEKCWTEDEVKRFVKGLRQYGK----NFFRIRKELLPNKETGELITFYY 52 (63)
T ss_dssp CCCCCCSCCHHHHHHHHHHHHHTCS----CHHHHHHHSCTTSCHHHHHHHHH
T ss_pred CCcCCCCcCHHHHHHHHHHHHHhCc----cHHHHHHHHcCCCcHHHHHHHHh
Confidence 3567789999999999999999975 7999998 799999999998884
No 69
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=98.42 E-value=2.7e-07 Score=70.73 Aligned_cols=51 Identities=16% Similarity=0.175 Sum_probs=44.1
Q ss_pred cCCCCCCHHHHHHHHHHHHhCCCCCCcchhhHHHHcC---CCCCHHHHHHHHHHhhh
Q 047185 55 EEEKEWNEEDIEILKKQMVKNPVGKPKRWEVIAEAFN---GRHRVESVIKKAKELGE 108 (214)
Q Consensus 55 ~~~~~WT~EE~~lL~kav~kyP~Gt~~RWe~IA~~lg---~~RT~~qc~~k~k~l~~ 108 (214)
...++||.||+..|+.+|++|+ . ++|..|+..+. .+||..||..+|+.+..
T Consensus 11 r~r~~WT~EEd~~L~~gV~k~G--~-g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk 64 (105)
T 2aje_A 11 RIRRPFSVAEVEALVQAVEKLG--T-GRWRDVKLCAFEDADHRTYVDLKDKWKTLVH 64 (105)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHC--S-SSHHHHHSSSSSSTTCCCHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHhC--C-CChHHHHHHhccccCCCCHHHHHHHHHHHHh
Confidence 5788999999999999999995 3 47999999652 37999999999998764
No 70
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=98.35 E-value=8.3e-07 Score=63.11 Aligned_cols=45 Identities=22% Similarity=0.395 Sum_probs=41.2
Q ss_pred CCCCCCCHHHHHHHHHHHHhCCCCCCCcHHHHHh-hCCCCCHHHHHHHHH
Q 047185 151 GGGGVWNAGEDIALLNALKAFPKDVPLRWEKIAA-AVPGRSKAACMKRFS 199 (214)
Q Consensus 151 ~~~~~WT~eED~~L~~al~~~p~~~~~rW~kIA~-~vPGRT~~qc~~Ry~ 199 (214)
.....||++|-++|+.+|..|++ .|..|+. +||+||..||...|-
T Consensus 6 ~~~~~WT~eE~~~Fe~~l~~yGK----df~~I~~~~v~~Kt~~~~v~fYY 51 (70)
T 2crg_A 6 SGMEEWSASEACLFEEALEKYGK----DFNDIRQDFLPWKSLTSIIEYYY 51 (70)
T ss_dssp CSSCCCCHHHHHHHHHHHHHTCS----CHHHHHHTTCSSSCHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHhCc----cHHHHHHHHcCCCCHHHHHHHHH
Confidence 45679999999999999999975 7999999 799999999999885
No 71
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=98.32 E-value=1.6e-06 Score=65.17 Aligned_cols=55 Identities=20% Similarity=0.317 Sum_probs=48.5
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCCCCcHHHHHhhC-----CCCCHHHHHHHHHHHHHHHhchhc
Q 047185 152 GGGVWNAGEDIALLNALKAFPKDVPLRWEKIAAAV-----PGRSKAACMKRFSDLKRDFRSSKA 210 (214)
Q Consensus 152 ~~~~WT~eED~~L~~al~~~p~~~~~rW~kIA~~v-----PGRT~~qc~~Ry~~L~~~v~~~k~ 210 (214)
...+||.||+..|..++..|. .||..|+... ++||.+++++||..+...+...++
T Consensus 29 ~~~~WTkEETd~Lf~L~~~fd----lRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~~~r~ 88 (93)
T 3hm5_A 29 HDDAWTKAETDHLFDLSRRFD----LRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVRA 88 (93)
T ss_dssp CBTTBCHHHHHHHHHHHHHTT----TCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHHHhC----CCeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 448999999999999999994 7999999998 689999999999998877665543
No 72
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=98.31 E-value=1e-06 Score=66.09 Aligned_cols=45 Identities=18% Similarity=0.316 Sum_probs=41.2
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCCCCcHHHHHhhCCCCCHHHHHHHHHH
Q 047185 152 GGGVWNAGEDIALLNALKAFPKDVPLRWEKIAAAVPGRSKAACMKRFSD 200 (214)
Q Consensus 152 ~~~~WT~eED~~L~~al~~~p~~~~~rW~kIA~~vPGRT~~qc~~Ry~~ 200 (214)
....||++|..+|+.++..||+ +|.+||..||+||..||...|-.
T Consensus 42 ~~~~WT~eE~~~F~~~~~~~gK----~F~~Ia~~l~~Kt~~~cV~~YY~ 86 (94)
T 4a69_C 42 VMNMWSEQEKETFREKFMQHPK----NFGLIASFLERKTVAECVLYYYL 86 (94)
T ss_dssp HTCCCCHHHHHHHHHHHHHSTT----CHHHHHHTCTTCCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCC----CHHHHHHHcCCCCHHHHHHHHhc
Confidence 4678999999999999999975 89999999999999999999843
No 73
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=98.28 E-value=4.5e-06 Score=76.38 Aligned_cols=145 Identities=17% Similarity=0.201 Sum_probs=97.0
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCCCcchhhHHHHcCCCCCHHHHHHHHHHhhhcccCCchhHHHHhhhhc----------
Q 047185 56 EEKEWNEEDIEILKKQMVKNPVGKPKRWEVIAEAFNGRHRVESVIKKAKELGEKKIDDSDSYNQFLKNRK---------- 125 (214)
Q Consensus 56 ~~~~WT~EE~~lL~kav~kyP~Gt~~RWe~IA~~lg~~RT~~qc~~k~k~l~~~~~~~~~~~~~~l~~~~---------- 125 (214)
.=+.||.-|-..|++|+.+| |. +.-+.||..|++++|.++|...++-+-.. ......|++++.+-.
T Consensus 122 GF~~WnrrDF~~FI~a~~ky--GR-~d~~~IA~ev~~~Kt~eEV~~Y~~vFw~R-y~Ei~d~erii~~IEkgE~ki~r~~ 197 (374)
T 2y9y_A 122 GFTNWNKLEFRKFITVSGKY--GR-NSIQAIARELAPGKTLEEVRAYAKAFWSN-IERIEDYEKYLKIIENEEEKIKRVK 197 (374)
T ss_dssp CCCCSCHHHHHHHHHHHHHH--CT-TCHHHHHSSCCCSSSHHHHHHHHHHHHHT-CSSCSCCTTTHHHHHHHHHHHHHHH
T ss_pred hhcccCHHHHHHHHHHHHHh--CH-hHHHHHHHHHccCCCHHHHHHHHHHHHHh-hhhhccHHHHHHHHHHHHHHHHHHH
Confidence 44579999999999999999 44 68999999997579999999766654322 122233333332210
Q ss_pred ----ccchhhhhccccc---ccccccccccCCCCCCCCCHHHHHHHHHHHHhCCCCCCCcHHHHHhh------------C
Q 047185 126 ----AIDMRVVQENCED---SKKESQENVVVGGGGGVWNAGEDIALLNALKAFPKDVPLRWEKIAAA------------V 186 (214)
Q Consensus 126 ----~l~~r~~~~~~~~---~~s~~~~~~~~~~~~~~WT~eED~~L~~al~~~p~~~~~rW~kIA~~------------v 186 (214)
.+...+.....+- .-.++. .......||.+||..|+.+|..|+-+.+..|++|-.. +
T Consensus 198 ~~~~~L~~Ki~~y~~P~~~L~i~y~~----~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~ 273 (374)
T 2y9y_A 198 MQQEALRRKLSEYKNPFFDLKLKHPP----SSNNKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYF 273 (374)
T ss_dssp HHHHHHHHHHTTCSSHHHHCCCSSCC----CCSSCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHH
T ss_pred HHHHHHHHHHHHccCCHHHceeccCC----CCCCCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHH
Confidence 0000000000000 000111 1125678999999999999999998777899999543 5
Q ss_pred CCCCHHHHHHHHHHHHHHHhch
Q 047185 187 PGRSKAACMKRFSDLKRDFRSS 208 (214)
Q Consensus 187 PGRT~~qc~~Ry~~L~~~v~~~ 208 (214)
-.||..++..|...|+..|.+-
T Consensus 274 kSRT~~EL~rRc~tLi~~IeKE 295 (374)
T 2y9y_A 274 RSRTPVELARRGNTLLQCLEKE 295 (374)
T ss_dssp HTCCHHHHHHHHHHHHHHHHTT
T ss_pred hcCCHHHHHHHHHHHHHHHHHH
Confidence 6799999999999999877543
No 74
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=98.26 E-value=1e-06 Score=61.53 Aligned_cols=49 Identities=18% Similarity=0.284 Sum_probs=42.5
Q ss_pred cCCCCCCHHHHHHHHHHHHhCCCCCCcchhhHHH---HcCCCCCHHHHHHHHHHhhh
Q 047185 55 EEEKEWNEEDIEILKKQMVKNPVGKPKRWEVIAE---AFNGRHRVESVIKKAKELGE 108 (214)
Q Consensus 55 ~~~~~WT~EE~~lL~kav~kyP~Gt~~RWe~IA~---~lg~~RT~~qc~~k~k~l~~ 108 (214)
.+..+||+||+..|.++|.+| |. .|..|+. ++. +||.-++-.+|+.|..
T Consensus 6 ~~r~~WT~EE~~~L~~gV~k~--G~--~W~~I~~~y~f~~-~RT~VdLKdk~r~L~k 57 (62)
T 1x58_A 6 SGRKDFTKEEVNYLFHGVKTM--GN--HWNSILWSFPFQK-GRRAVDLAHKYHRLIS 57 (62)
T ss_dssp CCSSSCCHHHHHHHHHHHHHH--CS--CHHHHHHHSCCCT-TCCHHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHHH--hH--hHHHHHHhCCCcc-CcccchHHHHHHHHHh
Confidence 467899999999999999999 43 7999995 555 7999999999988754
No 75
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=97.57 E-value=1.2e-07 Score=67.30 Aligned_cols=56 Identities=20% Similarity=0.266 Sum_probs=49.4
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCCCCcHHHHHhhCCCCCHHHHHHHHHHHHHHHhchh
Q 047185 152 GGGVWNAGEDIALLNALKAFPKDVPLRWEKIAAAVPGRSKAACMKRFSDLKRDFRSSK 209 (214)
Q Consensus 152 ~~~~WT~eED~~L~~al~~~p~~~~~rW~kIA~~vPGRT~~qc~~Ry~~L~~~v~~~k 209 (214)
..--||.|||..|+.++++-+.+ +..|..||..+ +||.+|+.+||..|+..|...|
T Consensus 13 ~vvlWTReeDR~IL~~cq~~G~s-~~tfa~iA~~L-nks~~QV~~RF~~Lm~Lf~kSk 68 (70)
T 2lr8_A 13 IIILWTRNDDRVILLECQKRGPS-SKTFAYLAAKL-DKNPNQVSERFQQLMKLFEKSK 68 (70)
Confidence 45689999999999999886543 57999999999 9999999999999999998765
No 76
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=98.24 E-value=2.5e-06 Score=63.83 Aligned_cols=60 Identities=15% Similarity=0.265 Sum_probs=52.4
Q ss_pred CCCCCCCHHHHHHHHHHHHhCCCCCCCcHHHHHhhCCCCCHHHHHHHHHHHHHHHhchhcc
Q 047185 151 GGGGVWNAGEDIALLNALKAFPKDVPLRWEKIAAAVPGRSKAACMKRFSDLKRDFRSSKAG 211 (214)
Q Consensus 151 ~~~~~WT~eED~~L~~al~~~p~~~~~rW~kIA~~vPGRT~~qc~~Ry~~L~~~v~~~k~~ 211 (214)
...--||.++|+.|+.++++-+. .+..|..||..+.+||.+|+.+||..|...|....+.
T Consensus 31 e~VvlWTRe~DR~IL~~cQ~~G~-s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~Lf~~~~~~ 90 (95)
T 1ug2_A 31 EKVVLWTREADRVILTMCQEQGA-QPHTFSVISQQLGNKTPVEVSHRFRELMQLFHTACES 90 (95)
T ss_dssp CCCSSSCHHHHHHHHHHHHHTTS-CTTTHHHHHHHHSSCCHHHHHHHHHHHHHHHHHCSSS
T ss_pred CEEEEeccccCHHHHHHHHhcCC-ChhHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHhcc
Confidence 34568999999999999999754 2689999999999999999999999999999877654
No 77
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=98.12 E-value=4.3e-06 Score=62.65 Aligned_cols=45 Identities=20% Similarity=0.446 Sum_probs=40.9
Q ss_pred cCCCCCCHHHHHHHHHHHHhCCCCCCcchhhHHHHcCCCCCHHHHHHHHH
Q 047185 55 EEEKEWNEEDIEILKKQMVKNPVGKPKRWEVIAEAFNGRHRVESVIKKAK 104 (214)
Q Consensus 55 ~~~~~WT~EE~~lL~kav~kyP~Gt~~RWe~IA~~lg~~RT~~qc~~k~k 104 (214)
.....||+||..++.+++..|| .+|-+||++|+ +||+.||+..|=
T Consensus 41 ~~~~~WT~eE~~~F~~~~~~~g----K~F~~Ia~~l~-~Kt~~~cV~~YY 85 (94)
T 4a69_C 41 QVMNMWSEQEKETFREKFMQHP----KNFGLIASFLE-RKTVAECVLYYY 85 (94)
T ss_dssp HHTCCCCHHHHHHHHHHHHHST----TCHHHHHHTCT-TCCHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHcC----CCHHHHHHHcC-CCCHHHHHHHHh
Confidence 5678899999999999999996 47999999998 899999999883
No 78
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.10 E-value=5.4e-06 Score=57.64 Aligned_cols=44 Identities=18% Similarity=0.253 Sum_probs=38.8
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCCCcchhhHHH-HcCCCCCHHHHHHHHH
Q 047185 56 EEKEWNEEDIEILKKQMVKNPVGKPKRWEVIAE-AFNGRHRVESVIKKAK 104 (214)
Q Consensus 56 ~~~~WT~EE~~lL~kav~kyP~Gt~~RWe~IA~-~lg~~RT~~qc~~k~k 104 (214)
....||+||..++.+++.+|| .+|..|+. +|+ +||+.||++.|=
T Consensus 8 ~~~~WT~eE~~~Fe~~l~~yG----Kdf~~I~~~~v~-~Kt~~~~v~fYY 52 (63)
T 2yqk_A 8 IEKCWTEDEVKRFVKGLRQYG----KNFFRIRKELLP-NKETGELITFYY 52 (63)
T ss_dssp CCCSCCHHHHHHHHHHHHHTC----SCHHHHHHHSCT-TSCHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHHhC----ccHHHHHHHHcC-CCcHHHHHHHHh
Confidence 356899999999999999995 37999998 588 799999998883
No 79
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.09 E-value=3.5e-06 Score=72.48 Aligned_cols=48 Identities=13% Similarity=0.214 Sum_probs=42.7
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCCCcchhhHHHHcCCCCCHHHHHHHHHHhhh
Q 047185 56 EEKEWNEEDIEILKKQMVKNPVGKPKRWEVIAEAFNGRHRVESVIKKAKELGE 108 (214)
Q Consensus 56 ~~~~WT~EE~~lL~kav~kyP~Gt~~RWe~IA~~lg~~RT~~qc~~k~k~l~~ 108 (214)
....||+||+.+|.+++.+|+ .+|..||..|| +||+.||...|.....
T Consensus 132 ~s~~WTeEE~~lFleAl~kYG----KDW~~IAk~Vg-TKT~~QcKnfY~~~kK 179 (235)
T 2iw5_B 132 CNARWTTEEQLLAVQAIRKYG----RDFQAISDVIG-NKSVVQVKNFFVNYRR 179 (235)
T ss_dssp CCSSCCHHHHHHHHHHHHHHS----SCHHHHHHHHS-SCCHHHHHHHHHHTTT
T ss_pred cCCCCCHHHHHHHHHHHHHHC----cCHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 466899999999999999994 47999999999 7999999999976654
No 80
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=98.05 E-value=3.2e-05 Score=64.33 Aligned_cols=146 Identities=13% Similarity=0.100 Sum_probs=81.1
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCCCcchhhHHHH--cCCCCCHHHHHHHHHHhhhcccCCchhHHHHhhhh-------cc
Q 047185 56 EEKEWNEEDIEILKKQMVKNPVGKPKRWEVIAEA--FNGRHRVESVIKKAKELGEKKIDDSDSYNQFLKNR-------KA 126 (214)
Q Consensus 56 ~~~~WT~EE~~lL~kav~kyP~Gt~~RWe~IA~~--lg~~RT~~qc~~k~k~l~~~~~~~~~~~~~~l~~~-------~~ 126 (214)
+-..||+.|...|.+++.+|+.. .+||+.|+.. |. ++|.++|...+..+...-......++...... +.
T Consensus 6 ~~~~~t~~E~r~fira~~kfG~~-~~r~~~I~~da~L~-~Ks~~~v~~y~~~f~~~c~~~~~~~~~~~~~~~~~~~~~~~ 83 (211)
T 4b4c_A 6 NIKGFSDAEIRRFIKSYKKFGGP-LERLDAIARDAELV-DKSETDLRRLGELVHNGCIKALKDSSSGTERTGGRLGKVKG 83 (211)
T ss_dssp --CCSCHHHHHHHHHHHTTCSSG-GGCHHHHHHHTTCT-TSCHHHHHHHHHHHHHHHHHHHC-----------------C
T ss_pred cCCCCCHHHHHHHHHHHHHHCCc-hhHHHHHHHHhccC-CCCHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccc
Confidence 45789999999999999999532 3699999986 55 68999988766654321000000000000000 00
Q ss_pred cc--------------hhhh-----hcccccccc--ccc---ccccCCCCCCCCCHHHHHHHHHHHHhCCCCCCCcHHHH
Q 047185 127 ID--------------MRVV-----QENCEDSKK--ESQ---ENVVVGGGGGVWNAGEDIALLNALKAFPKDVPLRWEKI 182 (214)
Q Consensus 127 l~--------------~r~~-----~~~~~~~~s--~~~---~~~~~~~~~~~WT~eED~~L~~al~~~p~~~~~rW~kI 182 (214)
.. -|.. ..-....+. ... ....+......||.++|..|+.++.+|+. .+|+.|
T Consensus 84 ~~~~~~~v~~nA~~il~R~~~l~~L~~~v~~~~~~~~~~~i~~~~~~~~~~~~W~~~~D~~LL~Gi~k~G~---g~w~~I 160 (211)
T 4b4c_A 84 PTFRISGVQVNAKLVISHEEELIPLHKSIPSDPEERKQYTIPCHTKAAHFDIDWGKEDDSNLLIGIYEYGY---GSWEMI 160 (211)
T ss_dssp CEEEETTEEEEHHHHHHHHHHHHHHHHHSCSSHHHHHTCCCCSCCCCCCSSSCCCHHHHHHHHHHHHHHCT---TCHHHH
T ss_pred hhhhhcccchhHHHHHHhHHHHHHHHHHHHhchhhHHHcCcCCCCCCCCCCCCccHHHHHHHHHHHHHHCc---CcHHHH
Confidence 00 0000 000000000 000 00001223457999999999999999986 479999
Q ss_pred HhhC------------CCC--CHHHHHHHHHHHHHHHh
Q 047185 183 AAAV------------PGR--SKAACMKRFSDLKRDFR 206 (214)
Q Consensus 183 A~~v------------PGR--T~~qc~~Ry~~L~~~v~ 206 (214)
-.-. +.+ +..++..|..+|...+.
T Consensus 161 r~D~~l~~~~k~~~~~~~k~p~a~~L~rR~~~Ll~~l~ 198 (211)
T 4b4c_A 161 KMDPDLSLTHKILPDDPDKKPQAKQLQTRADYLIKLLS 198 (211)
T ss_dssp HHCSSSSCTTTSSCSSTTSSCCHHHHHHHHHHHHHHHH
T ss_pred HhChhcCccccccccccccCCChHHHHHHHHHHHHHHH
Confidence 7522 123 46789999888776654
No 81
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.95 E-value=1.4e-05 Score=56.77 Aligned_cols=45 Identities=16% Similarity=0.263 Sum_probs=39.7
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCCCcchhhHHH-HcCCCCCHHHHHHHHHH
Q 047185 56 EEKEWNEEDIEILKKQMVKNPVGKPKRWEVIAE-AFNGRHRVESVIKKAKE 105 (214)
Q Consensus 56 ~~~~WT~EE~~lL~kav~kyP~Gt~~RWe~IA~-~lg~~RT~~qc~~k~k~ 105 (214)
....||+||..++..++.+|| .+|..|+. +|+ +||+.||+..|=.
T Consensus 7 ~~~~WT~eE~~~Fe~~l~~yG----Kdf~~I~~~~v~-~Kt~~~~v~fYY~ 52 (70)
T 2crg_A 7 GMEEWSASEACLFEEALEKYG----KDFNDIRQDFLP-WKSLTSIIEYYYM 52 (70)
T ss_dssp SSCCCCHHHHHHHHHHHHHTC----SCHHHHHHTTCS-SSCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhC----ccHHHHHHHHcC-CCCHHHHHHHHHh
Confidence 456899999999999999995 36999999 688 7999999998843
No 82
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=97.70 E-value=6.2e-05 Score=51.74 Aligned_cols=48 Identities=15% Similarity=0.278 Sum_probs=41.7
Q ss_pred CCCCCHHHHHHHHHHHHhCCCC-----CCCcHHHHHh-hCCCCCHHHHHHHHHH
Q 047185 153 GGVWNAGEDIALLNALKAFPKD-----VPLRWEKIAA-AVPGRSKAACMKRFSD 200 (214)
Q Consensus 153 ~~~WT~eED~~L~~al~~~p~~-----~~~rW~kIA~-~vPGRT~~qc~~Ry~~ 200 (214)
..++|+|||.+|...|..|... +..-|..||. .+|++|-..|++||..
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k 55 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLK 55 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHH
Confidence 4689999999999999999432 3468999999 8999999999999964
No 83
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=97.66 E-value=0.00013 Score=54.71 Aligned_cols=54 Identities=13% Similarity=0.252 Sum_probs=46.2
Q ss_pred hhhccCCCCCCHHHHHHHHHHHHhCCCCCCcchhhHHHHcC----CCCCHHHHHHHHHHhhh
Q 047185 51 QRKSEEEKEWNEEDIEILKKQMVKNPVGKPKRWEVIAEAFN----GRHRVESVIKKAKELGE 108 (214)
Q Consensus 51 ~~~~~~~~~WT~EE~~lL~kav~kyP~Gt~~RWe~IA~~lg----~~RT~~qc~~k~k~l~~ 108 (214)
+.......+||.||+..|..++.+|. .||-.|+..+. .+||++++..||-.+..
T Consensus 24 Y~~~L~~~~WTkEETd~Lf~L~~~fd----lRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~ 81 (93)
T 3hm5_A 24 YQLYLHDDAWTKAETDHLFDLSRRFD----LRFVVIHDRYDHQQFKKRSVEDLKERYYHICA 81 (93)
T ss_dssp HHHHTCBTTBCHHHHHHHHHHHHHTT----TCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHH
T ss_pred HHHHcCCCCCCHHHHHHHHHHHHHhC----CCeeeehhhhccCCCCCCCHHHHHHHHHHHHH
Confidence 55556669999999999999999994 49999999993 36999999999987643
No 84
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=97.53 E-value=8.7e-05 Score=69.94 Aligned_cols=46 Identities=15% Similarity=0.302 Sum_probs=41.5
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCCCcchhhHHHHcCCCCCHHHHHHHHHHhh
Q 047185 57 EKEWNEEDIEILKKQMVKNPVGKPKRWEVIAEAFNGRHRVESVIKKAKELG 107 (214)
Q Consensus 57 ~~~WT~EE~~lL~kav~kyP~Gt~~RWe~IA~~lg~~RT~~qc~~k~k~l~ 107 (214)
...||+||..+|.+++.+| |. +|..||+.|| +||+.||...|....
T Consensus 380 ~~~WT~eE~~~f~~al~~y--Gk--dw~~IA~~Vg-TKT~~Qvk~fy~~~k 425 (482)
T 2xag_B 380 NARWTTEEQLLAVQAIRKY--GR--DFQAISDVIG-NKSVVQVKNFFVNYR 425 (482)
T ss_dssp CSCCCHHHHHHHHHHHHHH--TT--CHHHHHHHHS-SCCHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHHH--Cc--CHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 6789999999999999999 43 7999999999 799999999997654
No 85
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.41 E-value=0.00035 Score=52.22 Aligned_cols=47 Identities=17% Similarity=0.336 Sum_probs=42.2
Q ss_pred CCCCHHHHHHHHHHHHhCCCCCCcchhhHHHHcCCCCCHHHHHHHHHHh
Q 047185 58 KEWNEEDIEILKKQMVKNPVGKPKRWEVIAEAFNGRHRVESVIKKAKEL 106 (214)
Q Consensus 58 ~~WT~EE~~lL~kav~kyP~Gt~~RWe~IA~~lg~~RT~~qc~~k~k~l 106 (214)
-.||.|||..+..++++-++ ++..|..||..|+ +||+.||..|+++|
T Consensus 34 vlWTRe~DR~IL~~cQ~~G~-s~~tFa~iA~~L~-Nks~nqV~~RFq~L 80 (95)
T 1ug2_A 34 VLWTREADRVILTMCQEQGA-QPHTFSVISQQLG-NKTPVEVSHRFREL 80 (95)
T ss_dssp SSSCHHHHHHHHHHHHHTTS-CTTTHHHHHHHHS-SCCHHHHHHHHHHH
T ss_pred EEeccccCHHHHHHHHhcCC-ChhHHHHHHHHHc-cCCHHHHHHHHHHH
Confidence 47999999999999999843 4789999999998 79999999999987
No 86
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=97.35 E-value=0.0002 Score=51.92 Aligned_cols=60 Identities=20% Similarity=0.450 Sum_probs=48.4
Q ss_pred CCCCCCHHHHHHHHHHHHhCC----C--CCCCcHHHHHhhCC----CCCHHHHHHHHHHHHHHHhchhcc
Q 047185 152 GGGVWNAGEDIALLNALKAFP----K--DVPLRWEKIAAAVP----GRSKAACMKRFSDLKRDFRSSKAG 211 (214)
Q Consensus 152 ~~~~WT~eED~~L~~al~~~p----~--~~~~rW~kIA~~vP----GRT~~qc~~Ry~~L~~~v~~~k~~ 211 (214)
....||.+|-.+|+.++.... . .....|..||..|- .||+.||+.+|+.|...++.++..
T Consensus 3 R~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~Yk~~k~~ 72 (86)
T 2ebi_A 3 RAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKEFKKAKHH 72 (86)
T ss_dssp CSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCSCSSC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 457899999999999987531 1 12358999998754 799999999999999999887653
No 87
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=97.31 E-value=0.00082 Score=50.34 Aligned_cols=55 Identities=18% Similarity=0.275 Sum_probs=47.0
Q ss_pred CCCCCCCHHHHHHHHHHHHhCCCCCCCcHHHHHhhCC-----CCCHHHHHHHHHHHHHHHhchh
Q 047185 151 GGGGVWNAGEDIALLNALKAFPKDVPLRWEKIAAAVP-----GRSKAACMKRFSDLKRDFRSSK 209 (214)
Q Consensus 151 ~~~~~WT~eED~~L~~al~~~p~~~~~rW~kIA~~vP-----GRT~~qc~~Ry~~L~~~v~~~k 209 (214)
+....||.||-..|..++..|. .||.-|+.... .||.++.++||-.+...+.+..
T Consensus 28 L~~~~WT~eETd~LfdLc~~fd----lRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~~r 87 (93)
T 4iej_A 28 LHDDAWTKAETDHLFDLSRRFD----LRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVR 87 (93)
T ss_dssp TCBTTBCHHHHHHHHHHHHHTT----TCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred hCCCCCCHHHHHHHHHHHHHcC----CCeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 3457899999999999999994 79999998764 7999999999998877766554
No 88
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=97.13 E-value=0.00047 Score=49.94 Aligned_cols=52 Identities=15% Similarity=0.196 Sum_probs=40.5
Q ss_pred CCCCCHHHHHHHHHHHHh----CCCCC--CcchhhHHHHc---CCCCCHHHHHHHHHHhhh
Q 047185 57 EKEWNEEDIEILKKQMVK----NPVGK--PKRWEVIAEAF---NGRHRVESVIKKAKELGE 108 (214)
Q Consensus 57 ~~~WT~EE~~lL~kav~k----yP~Gt--~~RWe~IA~~l---g~~RT~~qc~~k~k~l~~ 108 (214)
...||.+|+.+|+.+... |..|. ...|+.||+.| |-.||+.||..+|+.|..
T Consensus 4 ~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k 64 (86)
T 2ebi_A 4 AETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLK 64 (86)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 568999999999998753 22121 23699999987 347999999999998854
No 89
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=95.92 E-value=0.00016 Score=51.32 Aligned_cols=46 Identities=15% Similarity=0.275 Sum_probs=40.4
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCcchhhHHHHcCCCCCHHHHHHHHHHhh
Q 047185 59 EWNEEDIEILKKQMVKNPVGKPKRWEVIAEAFNGRHRVESVIKKAKELG 107 (214)
Q Consensus 59 ~WT~EE~~lL~kav~kyP~Gt~~RWe~IA~~lg~~RT~~qc~~k~k~l~ 107 (214)
.||.|||..+...+++-++ ++..|..||..|+ ||+.||..||++|.
T Consensus 16 lWTReeDR~IL~~cq~~G~-s~~tfa~iA~~Ln--ks~~QV~~RF~~Lm 61 (70)
T 2lr8_A 16 LWTRNDDRVILLECQKRGP-SSKTFAYLAAKLD--KNPNQVSERFQQLM 61 (70)
Confidence 5999999999999998743 4678999999995 99999999998863
No 90
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=96.87 E-value=0.0011 Score=59.10 Aligned_cols=53 Identities=13% Similarity=0.195 Sum_probs=47.8
Q ss_pred CCCCCCCHHHHHHHHHHHHhCCCCCCCcHHHHHhhCCCCCHHHHHHHHHHHHHHHh
Q 047185 151 GGGGVWNAGEDIALLNALKAFPKDVPLRWEKIAAAVPGRSKAACMKRFSDLKRDFR 206 (214)
Q Consensus 151 ~~~~~WT~eED~~L~~al~~~p~~~~~rW~kIA~~vPGRT~~qc~~Ry~~L~~~v~ 206 (214)
-.-+.||..+...|..|+..|+. +.|..||..|+|||..+|+..|+.+.+.+.
T Consensus 108 eGF~~W~rrdf~~Fi~a~~kyGr---~~~~~IA~ev~~Kt~eEV~~Y~~vFw~ry~ 160 (304)
T 1ofc_X 108 QGFTAWTKRDFNQFIKANEKYGR---DDIDNIAKDVEGKTPEEVIEYNAVFWERCT 160 (304)
T ss_dssp SSCTTCCHHHHHHHHHHHHHHCT---TCHHHHTTSSTTCCHHHHHHHHHHHHHHGG
T ss_pred hhhcccCHHHHHHHHHHHHHhCH---HHHHHHHHHhcCCCHHHHHHHHHHHHHhHH
Confidence 46789999999999999999975 699999999999999999888888887773
No 91
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=96.79 E-value=0.0025 Score=43.56 Aligned_cols=49 Identities=10% Similarity=0.218 Sum_probs=39.8
Q ss_pred CCCCCHHHHHHHHHHHHhCC---CC--CCcchhhHHH-HcCCCCCHHHHHHHHHHh
Q 047185 57 EKEWNEEDIEILKKQMVKNP---VG--KPKRWEVIAE-AFNGRHRVESVIKKAKEL 106 (214)
Q Consensus 57 ~~~WT~EE~~lL~kav~kyP---~G--t~~RWe~IA~-~lg~~RT~~qc~~k~k~l 106 (214)
..+||.|||.+|.+.|..|- ++ ...-|+.+|+ .++ ++|-.+|..||...
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~-~HtwqSwRdRy~k~ 56 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLT-QHSWQSLKDRYLKH 56 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSS-SCCSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCC-CCCHHHHHHHHHHH
Confidence 35899999999999999983 21 2245999999 677 89999999999653
No 92
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=96.40 E-value=0.0076 Score=45.05 Aligned_cols=49 Identities=14% Similarity=0.306 Sum_probs=42.3
Q ss_pred cCCCCCCHHHHHHHHHHHHhCCCCCCcchhhHHHHcC----CCCCHHHHHHHHHHhh
Q 047185 55 EEEKEWNEEDIEILKKQMVKNPVGKPKRWEVIAEAFN----GRHRVESVIKKAKELG 107 (214)
Q Consensus 55 ~~~~~WT~EE~~lL~kav~kyP~Gt~~RWe~IA~~lg----~~RT~~qc~~k~k~l~ 107 (214)
.....||.||...|-.++.+|- -||-.|+..+. ..||++++..||-.+.
T Consensus 28 L~~~~WT~eETd~LfdLc~~fd----lRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~ 80 (93)
T 4iej_A 28 LHDDAWTKAETDHLFDLSRRFD----LRFVVIHDRYDHQQFKKRSVEDLKERYYHIC 80 (93)
T ss_dssp TCBTTBCHHHHHHHHHHHHHTT----TCHHHHHHHCCTTTSCCCCHHHHHHHHHHHH
T ss_pred hCCCCCCHHHHHHHHHHHHHcC----CCeEEEeeccccCCCCCCCHHHHHHHHHHHH
Confidence 3457899999999999999994 59999999875 3699999999997664
No 93
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=95.88 E-value=0.062 Score=47.03 Aligned_cols=48 Identities=15% Similarity=0.157 Sum_probs=38.0
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCCC-cchhhHHHH--cCCCCCHHHHHHHHHHh
Q 047185 56 EEKEWNEEDIEILKKQMVKNPVGKP-KRWEVIAEA--FNGRHRVESVIKKAKEL 106 (214)
Q Consensus 56 ~~~~WT~EE~~lL~kav~kyP~Gt~-~RWe~IA~~--lg~~RT~~qc~~k~k~l 106 (214)
..++||+-|+..|.+++.+| |.+ .||+.|+.. |. .++...+..-|.+|
T Consensus 2 p~~~ltekEiR~l~Ra~~kf--G~~~~R~e~I~~dA~L~-~ks~~~i~~~~~~l 52 (270)
T 2xb0_X 2 PLGSIGESEVRALYKAILKF--GNLKEILDELIADGTLP-VKSFEKYGETYDEM 52 (270)
T ss_dssp TTCCCCHHHHHHHHHHHHHH--SSCTTCHHHHHHTTSSC-CCCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHh--CCHHHHHHHHHHhcccc-cCCHHHHHHHHHHH
Confidence 36789999999999999999 443 599999874 44 58887777666654
No 94
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=94.24 E-value=0.26 Score=34.24 Aligned_cols=55 Identities=11% Similarity=0.114 Sum_probs=43.4
Q ss_pred CCCCCCCHHHHHHHHHHHHhCCCCCCCcHHHHHhh--CCCCCHHHHHHHHHHHHHHHh
Q 047185 151 GGGGVWNAGEDIALLNALKAFPKDVPLRWEKIAAA--VPGRSKAACMKRFSDLKRDFR 206 (214)
Q Consensus 151 ~~~~~WT~eED~~L~~al~~~p~~~~~rW~kIA~~--vPGRT~~qc~~Ry~~L~~~v~ 206 (214)
...-.||+|....|..|+..++. ..--+..|... |+|.|-.+|+.|-....-.++
T Consensus 5 k~r~~WT~elH~~Fv~Av~~LG~-~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR~~l~ 61 (64)
T 1irz_A 5 KPRVLWTHELHNKFLAAVDHLGV-ERAVPKKILDLMNVDKLTRENVASHLQKFRVALK 61 (64)
T ss_dssp CSSCSSCHHHHHHHHHHHHHHCT-TTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCcCCHHHHHHHHHHHHHhCC-CCCCcHHHHHHcCCCCCCHHHHHHHHHHHHHHHH
Confidence 45679999999999999999973 23457888754 789999999999876555443
No 95
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=94.10 E-value=0.097 Score=43.04 Aligned_cols=54 Identities=13% Similarity=0.051 Sum_probs=41.9
Q ss_pred CCCCCCCCHHHHHHHHHHHHhCCCCCCCcHHHHHh--hCCCCCHHHHHHHHHHHHHH
Q 047185 150 GGGGGVWNAGEDIALLNALKAFPKDVPLRWEKIAA--AVPGRSKAACMKRFSDLKRD 204 (214)
Q Consensus 150 ~~~~~~WT~eED~~L~~al~~~p~~~~~rW~kIA~--~vPGRT~~qc~~Ry~~L~~~ 204 (214)
......||..|-..|..|+..|+. ...||..|+. .+++||..++..-|..+...
T Consensus 4 ~~~~~~~t~~E~r~fira~~kfG~-~~~r~~~I~~da~L~~Ks~~~v~~y~~~f~~~ 59 (211)
T 4b4c_A 4 RENIKGFSDAEIRRFIKSYKKFGG-PLERLDAIARDAELVDKSETDLRRLGELVHNG 59 (211)
T ss_dssp ----CCSCHHHHHHHHHHHTTCSS-GGGCHHHHHHHTTCTTSCHHHHHHHHHHHHHH
T ss_pred cccCCCCCHHHHHHHHHHHHHHCC-chhHHHHHHHHhccCCCCHHHHHHHHHHHHHH
Confidence 456789999999999999999962 1369999995 48899999999877766544
No 96
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=90.46 E-value=0.69 Score=32.05 Aligned_cols=48 Identities=13% Similarity=0.034 Sum_probs=38.4
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCCCcchhhHHHHcCC-CCCHHHHHHHHHH
Q 047185 57 EKEWNEEDIEILKKQMVKNPVGKPKRWEVIAEAFNG-RHRVESVIKKAKE 105 (214)
Q Consensus 57 ~~~WT~EE~~lL~kav~kyP~Gt~~RWe~IA~~lg~-~RT~~qc~~k~k~ 105 (214)
.-.||.|....+..||...+ +..--+..|.+.|+- +.|..+|.-+.+.
T Consensus 7 r~~WT~elH~~Fv~Av~~LG-~~~AtPk~Il~~M~v~gLT~~~VkSHLQK 55 (64)
T 1irz_A 7 RVLWTHELHNKFLAAVDHLG-VERAVPKKILDLMNVDKLTRENVASHLQK 55 (64)
T ss_dssp SCSSCHHHHHHHHHHHHHHC-TTTCCHHHHHHHHCCTTCCHHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHHhC-CCCCCcHHHHHHcCCCCCCHHHHHHHHHH
Confidence 44799999999999999996 344459999999973 5799998766554
No 97
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=78.49 E-value=5.4 Score=34.66 Aligned_cols=51 Identities=16% Similarity=0.204 Sum_probs=42.4
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCCCCcHHHHH--hhCCCCCHHHHHHHHHHHHHH
Q 047185 153 GGVWNAGEDIALLNALKAFPKDVPLRWEKIA--AAVPGRSKAACMKRFSDLKRD 204 (214)
Q Consensus 153 ~~~WT~eED~~L~~al~~~p~~~~~rW~kIA--~~vPGRT~~qc~~Ry~~L~~~ 204 (214)
+++||..|-..|..++..|+. ...||+.|+ ..++.++...++.=|..|...
T Consensus 3 ~~~ltekEiR~l~Ra~~kfG~-~~~R~e~I~~dA~L~~ks~~~i~~~~~~li~~ 55 (270)
T 2xb0_X 3 LGSIGESEVRALYKAILKFGN-LKEILDELIADGTLPVKSFEKYGETYDEMMEA 55 (270)
T ss_dssp TCCCCHHHHHHHHHHHHHHSS-CTTCHHHHHHTTSSCCCCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCC-HHHHHHHHHHhcccccCCHHHHHHHHHHHHHH
Confidence 678999999999999999963 236999998 578999999888888776543
No 98
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=74.31 E-value=5.5 Score=36.30 Aligned_cols=51 Identities=14% Similarity=0.145 Sum_probs=43.3
Q ss_pred CCCCCCCHHHHHHHHHHHHhCCCCCCCcHHHHHhhCC-CCCHHHHHHHHHHHHHH
Q 047185 151 GGGGVWNAGEDIALLNALKAFPKDVPLRWEKIAAAVP-GRSKAACMKRFSDLKRD 204 (214)
Q Consensus 151 ~~~~~WT~eED~~L~~al~~~p~~~~~rW~kIA~~vP-GRT~~qc~~Ry~~L~~~ 204 (214)
-..+.||.-+=..|..|+..|+. +.-..||..|. |||..+|...++.+-+.
T Consensus 121 eGF~~WnrrDF~~FI~a~~kyGR---~d~~~IA~ev~~~Kt~eEV~~Y~~vFw~R 172 (374)
T 2y9y_A 121 EGFTNWNKLEFRKFITVSGKYGR---NSIQAIARELAPGKTLEEVRAYAKAFWSN 172 (374)
T ss_dssp HCCCCSCHHHHHHHHHHHHHHCT---TCHHHHHSSCCCSSSHHHHHHHHHHHHHT
T ss_pred hhhcccCHHHHHHHHHHHHHhCH---hHHHHHHHHHccCCCHHHHHHHHHHHHHh
Confidence 35789999999999999999975 68999999998 99999999555555443
No 99
>2hzd_A Transcriptional enhancer factor TEF-1; DNA-binding, helix-turn-helix, gene regulation; NMR {Homo sapiens}
Probab=74.19 E-value=10 Score=27.43 Aligned_cols=55 Identities=20% Similarity=0.256 Sum_probs=38.6
Q ss_pred CCCCCCCHHHHHHHHHHHHhCCCCCCCcHHHH-------------H-----hhCCCCCHHHHHHHHHHHHHHHh
Q 047185 151 GGGGVWNAGEDIALLNALKAFPKDVPLRWEKI-------------A-----AAVPGRSKAACMKRFSDLKRDFR 206 (214)
Q Consensus 151 ~~~~~WT~eED~~L~~al~~~p~~~~~rW~kI-------------A-----~~vPGRT~~qc~~Ry~~L~~~v~ 206 (214)
...+-|+++=+.+|.+||..||..+ .+..++ | ..-..||.+||-.|...|.....
T Consensus 4 ~~e~vW~~~lE~aF~eaL~~yp~~g-~~k~~ls~~gk~~gRNelIs~yI~~~tGk~RtrKQVSShiQvlk~~~~ 76 (82)
T 2hzd_A 4 DAEGVWSPDIEQSFQEALSIYPPCG-RRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLARRKS 76 (82)
T ss_dssp GGSCCSCHHHHHHHHHHHHHSCSSS-CCCCCHHHHCCCCCTHHHHHHHHHHHHSCCCCSHHHHHHHHHHHHHHT
T ss_pred CcCCcCCHHHHHHHHHHHHHcCCCC-ccceeecccccccchhHHHHHHHHHHHcccCCccchhHHHHHHHHHHh
Confidence 3567999999999999999999742 222222 2 22346788888888888776543
No 100
>2hzd_A Transcriptional enhancer factor TEF-1; DNA-binding, helix-turn-helix, gene regulation; NMR {Homo sapiens}
Probab=68.51 E-value=19 Score=26.00 Aligned_cols=52 Identities=17% Similarity=0.189 Sum_probs=37.1
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCC------------CcchhhHHHHc----CCCCCHHHHHHHHHHhh
Q 047185 56 EEKEWNEEDIEILKKQMVKNPVGK------------PKRWEVIAEAF----NGRHRVESVIKKAKELG 107 (214)
Q Consensus 56 ~~~~WT~EE~~lL~kav~kyP~Gt------------~~RWe~IA~~l----g~~RT~~qc~~k~k~l~ 107 (214)
..+.|+++=-..|..|+..||+-. ..|=+.||.|+ |..||.+||..+-+-+.
T Consensus 5 ~e~vW~~~lE~aF~eaL~~yp~~g~~k~~ls~~gk~~gRNelIs~yI~~~tGk~RtrKQVSShiQvlk 72 (82)
T 2hzd_A 5 AEGVWSPDIEQSFQEALSIYPPCGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLA 72 (82)
T ss_dssp GSCCSCHHHHHHHHHHHHHSCSSSCCCCCHHHHCCCCCTHHHHHHHHHHHHSCCCCSHHHHHHHHHHH
T ss_pred cCCcCCHHHHHHHHHHHHHcCCCCccceeecccccccchhHHHHHHHHHHHcccCCccchhHHHHHHH
Confidence 457899886678899999999632 13345566666 56788888888776554
No 101
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=46.19 E-value=25 Score=26.26 Aligned_cols=53 Identities=19% Similarity=0.236 Sum_probs=35.2
Q ss_pred HHHHHHHHHHhCCCC----CCcchhhHHHHcCCCCC---HHHHHHHHHHhhhcccCCchhHHHHhhh
Q 047185 64 DIEILKKQMVKNPVG----KPKRWEVIAEAFNGRHR---VESVIKKAKELGEKKIDDSDSYNQFLKN 123 (214)
Q Consensus 64 E~~lL~kav~kyP~G----t~~RWe~IA~~lg~~RT---~~qc~~k~k~l~~~~~~~~~~~~~~l~~ 123 (214)
++-.|-.+|.+++|- ..+.|..||..||-..+ +.++...|..++ -+|+.|+..
T Consensus 41 DL~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~L-------~~yE~~~~~ 100 (117)
T 2jrz_A 41 DLYSLSKIVVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERIV-------YPYEMYQSG 100 (117)
T ss_dssp CHHHHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHTT-------HHHHHHHHH
T ss_pred cHHHHHHHHHHccCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHH-------HHHHHHHhc
Confidence 566777888877421 12589999999985432 455666676654 468877754
No 102
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=42.04 E-value=23 Score=26.84 Aligned_cols=52 Identities=10% Similarity=0.128 Sum_probs=35.1
Q ss_pred HHHHHHHHHHhCCC----CCCcchhhHHHHcCCCCCHHHHHHHHHHhhhcccCCchhHHHHhhh
Q 047185 64 DIEILKKQMVKNPV----GKPKRWEVIAEAFNGRHRVESVIKKAKELGEKKIDDSDSYNQFLKN 123 (214)
Q Consensus 64 E~~lL~kav~kyP~----Gt~~RWe~IA~~lg~~RT~~qc~~k~k~l~~~~~~~~~~~~~~l~~ 123 (214)
|+-.|-.+|.++++ ...+.|..||..||-.. +..+...|..++ -+|+.|+..
T Consensus 49 DL~~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~-~~~Lr~~Y~k~L-------~~yE~~~~~ 104 (123)
T 1kkx_A 49 NLFYLYMLVQKFGGADQVTRTQQWSMVAQRLQISD-YQQLESIYFRIL-------LPYERHMIS 104 (123)
T ss_dssp CTTHHHHHHTTTSCHHHHTTSHHHHHHHHHHTCCC-HHHHHHHHHHHH-------HHHHHHSCT
T ss_pred cHHHHHHHHHHhcCHHhccccccHHHHHHHHCCCh-HHHHHHHHHHHH-------HHHHHHHhC
Confidence 44566667766643 12358999999998543 777777787764 368887753
No 103
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=41.69 E-value=27 Score=25.39 Aligned_cols=51 Identities=10% Similarity=0.266 Sum_probs=32.9
Q ss_pred HHHHHHHHHHhCCCCC-----CcchhhHHHHcCCCCC---HHHHHHHHHHhhhcccCCchhHHHHhh
Q 047185 64 DIEILKKQMVKNPVGK-----PKRWEVIAEAFNGRHR---VESVIKKAKELGEKKIDDSDSYNQFLK 122 (214)
Q Consensus 64 E~~lL~kav~kyP~Gt-----~~RWe~IA~~lg~~RT---~~qc~~k~k~l~~~~~~~~~~~~~~l~ 122 (214)
++-.|=.+|.+++ |. .+.|..||..||-..+ ..++...|..++ -+|+.|+.
T Consensus 45 dL~~Ly~~V~~~G-G~~~V~~~~~W~~va~~lg~~~~~~~~~~lk~~Y~k~L-------~~yE~~~~ 103 (107)
T 2lm1_A 45 DLYTLHRIVQEEG-GMEQTTKDRKWAKVANRMQYPSSKSVGATLKAHYERIL-------HPFEVYTS 103 (107)
T ss_dssp CHHHHHHHHHHHT-CHHHHHHHTTHHHHHHHTTCCCCHHHHHHHHHHHHHHH-------HHHHHHHT
T ss_pred cHHHHHHHHHHhc-CHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHh-------HHHHHHHh
Confidence 5667777777774 32 2579999999985443 345555665553 35666654
No 104
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=38.60 E-value=18 Score=27.01 Aligned_cols=52 Identities=10% Similarity=0.138 Sum_probs=36.1
Q ss_pred HHHHHHHHHHhCCCC----CCcchhhHHHHcCCCCCHHHHHHHHHHhhhcccCCchhHHHHhhh
Q 047185 64 DIEILKKQMVKNPVG----KPKRWEVIAEAFNGRHRVESVIKKAKELGEKKIDDSDSYNQFLKN 123 (214)
Q Consensus 64 E~~lL~kav~kyP~G----t~~RWe~IA~~lg~~RT~~qc~~k~k~l~~~~~~~~~~~~~~l~~ 123 (214)
|+-.|-.+|..++|- ..+.|..||..||-.. +..+...|..++ -+|+.|+..
T Consensus 50 DL~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~-~~~Lr~~Y~k~L-------~~yE~~~~~ 105 (116)
T 2li6_A 50 NLFYLYMLVQKFGGADQVTRTQQWSMVAQRLQISD-YQQLESIYFRIL-------LPYERHMIS 105 (116)
T ss_dssp STTHHHHHHHHHTSHHHHHHTTCHHHHHHHHTSCC-TTHHHHHHHHHH-------SHHHHHHHH
T ss_pred cHHHHHHHHHHhcCHHHccccCcHHHHHHHhCCCh-HHHHHHHHHHHH-------HHHHHHHhC
Confidence 456677777777431 1258999999998533 677777787764 368888754
No 105
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=37.73 E-value=53 Score=25.10 Aligned_cols=42 Identities=26% Similarity=0.408 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHhCCCCCCCcHHHHHhhCCCCCHHHHHHHHHHHHHH
Q 047185 159 GEDIALLNALKAFPKDVPLRWEKIAAAVPGRSKAACMKRFSDLKRD 204 (214)
Q Consensus 159 eED~~L~~al~~~p~~~~~rW~kIA~~vPGRT~~qc~~Ry~~L~~~ 204 (214)
+-|..|+.+|..-+ .-.|..||..+ |-|...|..|.+.|.+.
T Consensus 3 ~~d~~il~~L~~~~---~~s~~~la~~l-g~s~~tv~~rl~~L~~~ 44 (162)
T 3i4p_A 3 RLDRKILRILQEDS---TLAVADLAKKV-GLSTTPCWRRIQKMEED 44 (162)
T ss_dssp HHHHHHHHHHTTCS---CSCHHHHHHHH-TCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCC---CCCHHHHHHHH-CcCHHHHHHHHHHHHHC
Confidence 34677778887653 47999999988 99999999999999754
No 106
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A
Probab=36.38 E-value=25 Score=25.69 Aligned_cols=53 Identities=15% Similarity=0.240 Sum_probs=34.9
Q ss_pred HHHHHHHHHHhCCCC----CCcchhhHHHHcCCCCC----HHHHHHHHHHhhhcccCCchhHHHHhhh
Q 047185 64 DIEILKKQMVKNPVG----KPKRWEVIAEAFNGRHR----VESVIKKAKELGEKKIDDSDSYNQFLKN 123 (214)
Q Consensus 64 E~~lL~kav~kyP~G----t~~RWe~IA~~lg~~RT----~~qc~~k~k~l~~~~~~~~~~~~~~l~~ 123 (214)
|+-.|-.+|..++|- ..+.|..||..||-..+ ..++...|..++ -.|+.|+..
T Consensus 34 DL~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~s~~~~Lk~~Y~k~L-------~~yE~~~~~ 94 (107)
T 1ig6_A 34 NLWTMFQAAQKLGGYETITARRQWKHIYDELGGNPGSTSAATCTRRHYERLI-------LPYERFIKG 94 (107)
T ss_dssp CHHHHHHHHHHTTHHHHHHHHTTHHHHHHHHTCCTTCTTTTTTHHHHHHHHT-------TTTHHHHHH
T ss_pred cHHHHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHH-------HHHHHHHcC
Confidence 567777788877421 12589999999984332 356666676654 367777753
No 107
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=34.98 E-value=46 Score=25.10 Aligned_cols=52 Identities=17% Similarity=0.158 Sum_probs=34.7
Q ss_pred HHHHHHHHHHhCCCCC-----CcchhhHHHHcCCCCC----HHHHHHHHHHhhhcccCCchhHHHHhhh
Q 047185 64 DIEILKKQMVKNPVGK-----PKRWEVIAEAFNGRHR----VESVIKKAKELGEKKIDDSDSYNQFLKN 123 (214)
Q Consensus 64 E~~lL~kav~kyP~Gt-----~~RWe~IA~~lg~~RT----~~qc~~k~k~l~~~~~~~~~~~~~~l~~ 123 (214)
++-.|-.+|..++ |. ...|..||..||-..+ ..++...|..++ -+|+.+...
T Consensus 53 DL~~Ly~~V~~~G-G~~~V~~~k~W~~Va~~lg~~~~~~sa~~~Lk~~Y~k~L-------~~yE~~~~~ 113 (128)
T 1c20_A 53 DLYELYNLVIARG-GLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYL-------YPYECEKKN 113 (128)
T ss_dssp CHHHHHHHHHHHT-CHHHHHHHTTHHHHHHHTCCCSSCCSHHHHHHHHHHHHT-------HHHHHHHHC
T ss_pred cHHHHHHHHHHhc-CHHHcCccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHH-------HHHHHHHHc
Confidence 5677778888774 32 2579999999985433 456666676654 367777653
No 108
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=33.95 E-value=69 Score=21.85 Aligned_cols=47 Identities=11% Similarity=0.195 Sum_probs=37.0
Q ss_pred CHHHHHHHHHHHHhCCCCCCCcHHHHHhhCCCCCHHHHHHHHHHHHHH
Q 047185 157 NAGEDIALLNALKAFPKDVPLRWEKIAAAVPGRSKAACMKRFSDLKRD 204 (214)
Q Consensus 157 T~eED~~L~~al~~~p~~~~~rW~kIA~~vPGRT~~qc~~Ry~~L~~~ 204 (214)
|++.|..++.+|...+.+.+..=..||..+ |-+...|..|-..|.+.
T Consensus 12 ~~~~~~~IL~~L~~~~~~~~~t~~eLA~~L-gvs~~tV~~~L~~L~~~ 58 (77)
T 1qgp_A 12 YQDQEQRILKFLEELGEGKATTAHDLSGKL-GTPKKEINRVLYSLAKK 58 (77)
T ss_dssp HHHHHHHHHHHHHHHCSSSCEEHHHHHHHH-CCCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCCCcCHHHHHHHH-CcCHHHHHHHHHHHHHC
Confidence 566777888899988755456778999988 79998888888888653
No 109
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=31.63 E-value=55 Score=24.52 Aligned_cols=53 Identities=21% Similarity=0.259 Sum_probs=34.3
Q ss_pred HHHHHHHHHHhCCCC----CCcchhhHHHHcCCCCC---HHHHHHHHHHhhhcccCCchhHHHHhhh
Q 047185 64 DIEILKKQMVKNPVG----KPKRWEVIAEAFNGRHR---VESVIKKAKELGEKKIDDSDSYNQFLKN 123 (214)
Q Consensus 64 E~~lL~kav~kyP~G----t~~RWe~IA~~lg~~RT---~~qc~~k~k~l~~~~~~~~~~~~~~l~~ 123 (214)
++-.|-++|.+++|- ..+.|..||..||-..+ +..+...|..++ -+|+.|+..
T Consensus 43 DLy~Ly~~V~~~GG~~~V~~~k~W~~V~~~lg~~~~~~~~~~Lr~~Y~k~L-------~~yE~~~~~ 102 (122)
T 2eqy_A 43 DLFQLNKLVAEEGGFAVVCKDRKWTKIATKMGFAPGKAVGSHIRGHYERIL-------NPYNLFLSG 102 (122)
T ss_dssp CHHHHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCSSSHHHHHHHHHHHHTH-------HHHHHHHHC
T ss_pred cHHHHHHHHHHccCHHHHcCCCcHHHHHHHhCCCCCCcHHHHHHHHHHHHh-------HHHHHHHhc
Confidence 567777888887431 13589999999985332 245555566553 367777754
No 110
>2oy9_A UPF0223 protein BH2638; PFAM, structural genomics, PSI-2, protein structure initiative; 1.60A {Bacillus halodurans c-125} SCOP: a.276.1.1
Probab=31.30 E-value=66 Score=23.87 Aligned_cols=41 Identities=17% Similarity=0.365 Sum_probs=32.2
Q ss_pred CCCCHHHHHHHHHHHHhCCCCCCcchhhHHHHcCCCCCHHHHHHHHHHhhhc
Q 047185 58 KEWNEEDIEILKKQMVKNPVGKPKRWEVIAEAFNGRHRVESVIKKAKELGEK 109 (214)
Q Consensus 58 ~~WT~EE~~lL~kav~kyP~Gt~~RWe~IA~~lg~~RT~~qc~~k~k~l~~~ 109 (214)
-.||.||+..++.. |+.|-.+.-.+=..++++..|+.++.-
T Consensus 11 ~dWSteEii~Vi~F-----------~~~VE~AYE~GV~r~~ll~~Y~~FK~V 51 (98)
T 2oy9_A 11 LDWSTEEVIDVVHF-----------FQAIEQAYDQGIAREDLLGKYRRFKEI 51 (98)
T ss_dssp CCCCHHHHHHHHHH-----------HHHHHHHHTTCEEHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH-----------HHHHHHHHHccCcHHHHHHHHHHHHHh
Confidence 45999999877654 788888776678889999998876543
No 111
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*
Probab=31.26 E-value=57 Score=25.29 Aligned_cols=14 Identities=7% Similarity=0.112 Sum_probs=10.6
Q ss_pred CCCCHHHHHHHHHH
Q 047185 154 GVWNAGEDIALLNA 167 (214)
Q Consensus 154 ~~WT~eED~~L~~a 167 (214)
..+|+||+..+..-
T Consensus 141 nd~t~eEe~~ir~e 154 (160)
T 2p1m_A 141 NDFTPEEEEEVRRE 154 (160)
T ss_dssp CCCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHh
Confidence 46999999877653
No 112
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=30.14 E-value=1.2e+02 Score=22.44 Aligned_cols=41 Identities=20% Similarity=0.358 Sum_probs=33.0
Q ss_pred HHHHHHHHHHhCCCCCCCcHHHHHhhCCCCCHHHHHHHHHHHHHH
Q 047185 160 EDIALLNALKAFPKDVPLRWEKIAAAVPGRSKAACMKRFSDLKRD 204 (214)
Q Consensus 160 ED~~L~~al~~~p~~~~~rW~kIA~~vPGRT~~qc~~Ry~~L~~~ 204 (214)
-|..|..+|...+ ...+..||..+ |-|...|..|.+.|.+.
T Consensus 10 ~d~~il~~L~~~~---~~s~~ela~~l-g~s~~tv~~~l~~L~~~ 50 (151)
T 2dbb_A 10 VDMQLVKILSENS---RLTYRELADIL-NTTRQRIARRIDKLKKL 50 (151)
T ss_dssp HHHHHHHHHHHCT---TCCHHHHHHHT-TSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC---CCCHHHHHHHH-CcCHHHHHHHHHHHHHC
Confidence 3556667777654 47999999988 89999999999999764
No 113
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A*
Probab=29.87 E-value=76 Score=24.95 Aligned_cols=13 Identities=15% Similarity=0.256 Sum_probs=9.9
Q ss_pred CCCCHHHHHHHHH
Q 047185 154 GVWNAGEDIALLN 166 (214)
Q Consensus 154 ~~WT~eED~~L~~ 166 (214)
..+|+||+..+..
T Consensus 149 nd~t~eEe~~ir~ 161 (169)
T 3v7d_A 149 NDFTPEEEAAIRR 161 (169)
T ss_dssp CCCCHHHHHHHHT
T ss_pred CCCCHHHHHHHHH
Confidence 3699999987654
No 114
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=27.20 E-value=1.1e+02 Score=23.61 Aligned_cols=42 Identities=14% Similarity=0.211 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHhCCCCCCCcHHHHHhhCCCCCHHHHHHHHHHHHHH
Q 047185 159 GEDIALLNALKAFPKDVPLRWEKIAAAVPGRSKAACMKRFSDLKRD 204 (214)
Q Consensus 159 eED~~L~~al~~~p~~~~~rW~kIA~~vPGRT~~qc~~Ry~~L~~~ 204 (214)
+-|..|+.+|...+ ...+..||..+ |-|...|..|.+.|.+.
T Consensus 27 ~~d~~IL~~L~~~~---~~s~~eLA~~l-glS~~tv~~rl~~L~~~ 68 (171)
T 2e1c_A 27 EIDKKIIKILQNDG---KAPLREISKIT-GLAESTIHERIRKLRES 68 (171)
T ss_dssp HHHHHHHHHHHHCT---TCCHHHHHHHH-TSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcC---CCCHHHHHHHH-CcCHHHHHHHHHHHHHC
Confidence 44667777887754 47899999988 89999999999999754
No 115
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=24.02 E-value=1.5e+02 Score=21.48 Aligned_cols=40 Identities=28% Similarity=0.344 Sum_probs=32.0
Q ss_pred HHHHHHHHHhCCCCCCCcHHHHHhhCCCCCHHHHHHHHHHHHHH
Q 047185 161 DIALLNALKAFPKDVPLRWEKIAAAVPGRSKAACMKRFSDLKRD 204 (214)
Q Consensus 161 D~~L~~al~~~p~~~~~rW~kIA~~vPGRT~~qc~~Ry~~L~~~ 204 (214)
|..+...|...+ ...+..||..+ |-|...|..|.+.|.+.
T Consensus 6 ~~~il~~L~~~~---~~~~~ela~~l-g~s~~tv~~~l~~L~~~ 45 (141)
T 1i1g_A 6 DKIILEILEKDA---RTPFTEIAKKL-GISETAVRKRVKALEEK 45 (141)
T ss_dssp HHHHHHHHHHCT---TCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC---CCCHHHHHHHH-CcCHHHHHHHHHHHHHC
Confidence 455666776553 46899999999 99999999999998765
No 116
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=23.45 E-value=1.3e+02 Score=20.84 Aligned_cols=46 Identities=11% Similarity=0.209 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHhCCCCCCCcHHHHHhhCCCCCHHHHHHHHHHHHHH
Q 047185 158 AGEDIALLNALKAFPKDVPLRWEKIAAAVPGRSKAACMKRFSDLKRD 204 (214)
Q Consensus 158 ~eED~~L~~al~~~p~~~~~rW~kIA~~vPGRT~~qc~~Ry~~L~~~ 204 (214)
.+-|..|+.+|...+.+....=..||..+ |-|...|..+...|.++
T Consensus 9 ~~~~~~IL~~L~~~~pg~~~t~~eLA~~L-gvsr~tV~~~L~~Le~~ 54 (81)
T 1qbj_A 9 QDQEQRILKFLEELGEGKATTAHDLSGKL-GTPKKEINRVLYSLAKK 54 (81)
T ss_dssp HHHHHHHHHHHHHHCTTCCBCHHHHHHHH-TCCHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHcCCCCCcCHHHHHHHH-CcCHHHHHHHHHHHHHC
Confidence 34466777888888755556778999988 79999998888888653
No 117
>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.39 E-value=1.9e+02 Score=19.99 Aligned_cols=49 Identities=14% Similarity=0.160 Sum_probs=37.1
Q ss_pred CCCCCCCHHHHHHHHHHHHhCCCCCCCcHHHHHhhCCCCCHHHHHHHHHHHHHHH
Q 047185 151 GGGGVWNAGEDIALLNALKAFPKDVPLRWEKIAAAVPGRSKAACMKRFSDLKRDF 205 (214)
Q Consensus 151 ~~~~~WT~eED~~L~~al~~~p~~~~~rW~kIA~~vPGRT~~qc~~Ry~~L~~~v 205 (214)
...-.||.++-..+...+. ...+..|=..-++=|..+++..|+.|...+
T Consensus 7 ~~~~~~s~~~~~~~~~~~~------~~~~y~iLgv~~~as~~eIk~aYr~la~~~ 55 (90)
T 2ys8_A 7 GSSASFTKEQADAIRRIRN------SKDSWDMLGVKPGASRDEVNKAYRKLAVLL 55 (90)
T ss_dssp CCCCCCCHHHHHHHHHHHT------CSSHHHHHTCCTTCCHHHHHHHHHHHHHHH
T ss_pred ccccCCCHHHHHHHHHHhc------CCCHHHHcCcCCCCCHHHHHHHHHHHHHHH
Confidence 3466899998888876543 246777776677899999999999887654
No 118
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=23.00 E-value=75 Score=24.53 Aligned_cols=51 Identities=16% Similarity=0.153 Sum_probs=34.5
Q ss_pred HHHHHHHHHHhCCCCC-----CcchhhHHHHcCCCCC----HHHHHHHHHHhhhcccCCchhHHHHhh
Q 047185 64 DIEILKKQMVKNPVGK-----PKRWEVIAEAFNGRHR----VESVIKKAKELGEKKIDDSDSYNQFLK 122 (214)
Q Consensus 64 E~~lL~kav~kyP~Gt-----~~RWe~IA~~lg~~RT----~~qc~~k~k~l~~~~~~~~~~~~~~l~ 122 (214)
++-.|=.+|.+++ |. .+.|..||..||-..+ ..++...|..++ -+|+.+..
T Consensus 65 DL~~Ly~~V~~~G-G~~~V~~~~~W~~Va~~lg~~~~~tsa~~~Lk~~Y~k~L-------~~yE~~~~ 124 (145)
T 2kk0_A 65 DLFMLYVLVTEKG-GLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYL-------YPYECEKR 124 (145)
T ss_dssp CHHHHHHHHHHHT-CHHHHHHHTCHHHHHHHTTCCTTSTTHHHHHHHHHHHHS-------SHHHHHHT
T ss_pred cHHHHHHHHHHhC-CHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHH-------HHHHHHHh
Confidence 6777888888885 32 2689999999985432 345666676654 36777754
No 119
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=22.32 E-value=1.8e+02 Score=21.44 Aligned_cols=40 Identities=15% Similarity=0.250 Sum_probs=32.6
Q ss_pred HHHHHHHHHhCCCCCCCcHHHHHhhCCCCCHHHHHHHHHHHHHH
Q 047185 161 DIALLNALKAFPKDVPLRWEKIAAAVPGRSKAACMKRFSDLKRD 204 (214)
Q Consensus 161 D~~L~~al~~~p~~~~~rW~kIA~~vPGRT~~qc~~Ry~~L~~~ 204 (214)
|..|..+|...+ ...+..||..+ |-|...|..|.+.|.+.
T Consensus 9 ~~~il~~L~~~~---~~s~~ela~~l-g~s~~tv~~~l~~L~~~ 48 (151)
T 2cyy_A 9 DKKIIKILQNDG---KAPLREISKIT-GLAESTIHERIRKLRES 48 (151)
T ss_dssp HHHHHHHHHHCT---TCCHHHHHHHH-CSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC---CCCHHHHHHHH-CcCHHHHHHHHHHHHHC
Confidence 556667777654 47999999988 89999999999999765
No 120
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens}
Probab=22.20 E-value=37 Score=24.13 Aligned_cols=43 Identities=14% Similarity=0.141 Sum_probs=24.5
Q ss_pred HHHHHHHHHHhCCCC----CCcchhhHHHHcCCCC--C-HHHHHHHHHHh
Q 047185 64 DIEILKKQMVKNPVG----KPKRWEVIAEAFNGRH--R-VESVIKKAKEL 106 (214)
Q Consensus 64 E~~lL~kav~kyP~G----t~~RWe~IA~~lg~~R--T-~~qc~~k~k~l 106 (214)
|+-.|-.+|..+++- ..+.|..||+.||-.. + +.++...|..+
T Consensus 37 DL~~Ly~~V~~~GG~~~V~~~~~W~~v~~~lg~~~~~~~~~~Lk~~Y~k~ 86 (96)
T 2jxj_A 37 DLYALSKIVASKGGFEMVTKEKKWSKVGSRLGYLPGKGTGSLLKSHYERI 86 (96)
T ss_dssp CCHHHHHHHHHHHTTHHHHHHTTHHHHHHHHTCCSCSCHHHHHHHHHTTT
T ss_pred cHHHHHHHHHHcCCHHHHccCCcHHHHHHHhCCCCcCcHHHHHHHHHHHH
Confidence 345566666666321 1257999999998433 2 33444445443
No 121
>4ard_A Capsid protein P27; viral protein, retrovirus, GAG; 7.00A {Mason-pfizer monkey virus}
Probab=21.79 E-value=62 Score=24.65 Aligned_cols=28 Identities=21% Similarity=0.369 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHhCCCC----------------CCcchhhHHHHc
Q 047185 63 EDIEILKKQMVKNPVG----------------KPKRWEVIAEAF 90 (214)
Q Consensus 63 EE~~lL~kav~kyP~G----------------t~~RWe~IA~~l 90 (214)
+.+.-|+++|..|++. ||..|..||...
T Consensus 4 k~iKdLKka~t~YG~ts~y~~~lL~~la~~~LtP~DWkslar~~ 47 (116)
T 4ard_A 4 AVIKELKTAASQYGATAPYTLAIVESVADNWLTPTDWNTLVRAV 47 (116)
T ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHhccChHhHHHHHHHH
Confidence 4456666667666443 578899999865
No 122
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=21.42 E-value=89 Score=23.37 Aligned_cols=50 Identities=18% Similarity=0.157 Sum_probs=32.5
Q ss_pred HHHHHHHHHHhCCCCC-----CcchhhHHHHcCCCCC---HHHHHHHHHHhhhcccCCchhHHHHh
Q 047185 64 DIEILKKQMVKNPVGK-----PKRWEVIAEAFNGRHR---VESVIKKAKELGEKKIDDSDSYNQFL 121 (214)
Q Consensus 64 E~~lL~kav~kyP~Gt-----~~RWe~IA~~lg~~RT---~~qc~~k~k~l~~~~~~~~~~~~~~l 121 (214)
++-.|-.+|.+++ |. ...|..||..||-..+ +.++...|..++ -+|+.+.
T Consensus 52 DL~~Ly~~V~~~G-G~~~V~~~~~W~~Va~~lg~~~~~s~~~~Lk~~Y~k~L-------~~yE~~~ 109 (125)
T 2cxy_A 52 DLFRLYVCVKEIG-GLAQVNKNKKWRELATNLNVGTSSSAASSLKKQYIQYL-------FAFECKI 109 (125)
T ss_dssp CHHHHHHHHHHHT-SHHHHHHHTCHHHHHHHTTSCSSHHHHHHHHHHHHHHT-------HHHHHHH
T ss_pred cHHHHHHHHHHcC-CHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHH-------HHHHHHH
Confidence 5677888888874 32 2589999999985442 345555565543 3566654
No 123
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=21.25 E-value=1.7e+02 Score=21.56 Aligned_cols=41 Identities=22% Similarity=0.270 Sum_probs=33.3
Q ss_pred HHHHHHHHHHhCCCCCCCcHHHHHhhCCCCCHHHHHHHHHHHHHH
Q 047185 160 EDIALLNALKAFPKDVPLRWEKIAAAVPGRSKAACMKRFSDLKRD 204 (214)
Q Consensus 160 ED~~L~~al~~~p~~~~~rW~kIA~~vPGRT~~qc~~Ry~~L~~~ 204 (214)
-|..|+.+|...+ ...+..||..+ |-|...|..|.+.|.+.
T Consensus 9 ~d~~il~~L~~~~---~~s~~ela~~l-g~s~~tv~~~l~~L~~~ 49 (152)
T 2cg4_A 9 LDRGILEALMGNA---RTAYAELAKQF-GVSPETIHVRVEKMKQA 49 (152)
T ss_dssp HHHHHHHHHHHCT---TSCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC---CCCHHHHHHHH-CcCHHHHHHHHHHHHHc
Confidence 3556777777764 47899999988 89999999999999765
Done!