Query 047187
Match_columns 339
No_of_seqs 159 out of 378
Neff 3.0
Searched_HMMs 29240
Date Mon Mar 25 14:54:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047187.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047187hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1irz_A ARR10-B; helix-turn-hel 100.0 2.2E-30 7.5E-35 197.9 8.0 62 153-214 2-63 (64)
2 2yum_A ZZZ3 protein, zinc fing 97.5 0.00039 1.3E-08 52.2 7.4 56 156-213 6-64 (75)
3 2cu7_A KIAA1915 protein; nucle 97.4 0.00067 2.3E-08 50.9 8.3 54 156-214 7-60 (72)
4 2yus_A SWI/SNF-related matrix- 97.1 0.0013 4.4E-08 51.1 7.3 50 154-208 14-63 (79)
5 1x41_A Transcriptional adaptor 96.7 0.0052 1.8E-07 44.6 7.0 49 156-208 6-54 (60)
6 2iw5_B Protein corest, REST co 96.3 0.0043 1.5E-07 57.7 5.3 53 153-210 128-180 (235)
7 3sjm_A Telomeric repeat-bindin 96.2 0.013 4.5E-07 43.6 6.8 52 156-212 9-60 (64)
8 2xag_B REST corepressor 1; ami 96.1 0.006 2.1E-07 61.4 6.0 52 155-211 377-428 (482)
9 2elk_A SPCC24B10.08C protein; 96.0 0.016 5.5E-07 41.9 6.0 49 158-209 9-57 (58)
10 2cqq_A RSGI RUH-037, DNAJ homo 95.7 0.022 7.5E-07 43.7 6.3 48 158-208 8-56 (72)
11 1ity_A TRF1; helix-turn-helix, 95.7 0.035 1.2E-06 41.1 7.0 55 153-212 5-59 (69)
12 2d9a_A B-MYB, MYB-related prot 95.4 0.053 1.8E-06 38.9 6.8 50 154-207 4-53 (60)
13 2aje_A Telomere repeat-binding 94.8 0.077 2.6E-06 43.5 7.2 58 152-214 7-66 (105)
14 1guu_A C-MYB, MYB proto-oncoge 94.8 0.07 2.4E-06 37.1 5.9 46 158-207 3-48 (52)
15 1gvd_A MYB proto-oncogene prot 94.6 0.074 2.5E-06 37.1 5.7 46 158-207 3-48 (52)
16 2din_A Cell division cycle 5-l 94.6 0.18 6.1E-06 36.8 8.0 51 157-213 8-58 (66)
17 2cqr_A RSGI RUH-043, DNAJ homo 94.6 0.19 6.4E-06 38.6 8.3 48 158-207 18-66 (73)
18 2hzd_A Transcriptional enhance 94.6 0.024 8.1E-07 45.3 3.3 55 157-213 5-77 (82)
19 2eqr_A N-COR1, N-COR, nuclear 94.5 0.13 4.3E-06 37.6 7.0 49 154-210 8-56 (61)
20 2roh_A RTBP1, telomere binding 94.2 0.15 5.3E-06 42.8 7.7 57 153-214 26-84 (122)
21 1w0t_A Telomeric repeat bindin 93.7 0.21 7E-06 35.1 6.5 50 158-212 2-51 (53)
22 2dim_A Cell division cycle 5-l 93.7 0.21 7.2E-06 36.8 6.8 50 154-207 5-54 (70)
23 2yqk_A Arginine-glutamic acid 93.2 0.38 1.3E-05 35.4 7.5 50 154-210 5-54 (63)
24 2cjj_A Radialis; plant develop 93.2 0.19 6.4E-06 40.3 6.2 53 159-213 9-62 (93)
25 1gv2_A C-MYB, MYB proto-oncoge 92.2 0.27 9.3E-06 38.3 5.9 48 158-213 56-103 (105)
26 2juh_A Telomere binding protei 92.2 0.35 1.2E-05 40.6 6.9 57 153-214 12-70 (121)
27 2k9n_A MYB24; R2R3 domain, DNA 92.1 0.48 1.6E-05 37.4 7.2 48 158-210 53-100 (107)
28 2ckx_A NGTRF1, telomere bindin 92.0 0.43 1.5E-05 37.4 6.7 51 160-215 2-54 (83)
29 1x58_A Hypothetical protein 49 89.9 1.2 4.1E-05 33.8 7.2 53 155-213 5-58 (62)
30 2llk_A Cyclin-D-binding MYB-li 89.7 0.73 2.5E-05 35.4 5.9 42 157-204 22-63 (73)
31 2ltp_A Nuclear receptor corepr 88.9 0.069 2.4E-06 41.8 0.0 48 158-210 16-63 (89)
32 1gv2_A C-MYB, MYB proto-oncoge 89.3 0.7 2.4E-05 36.0 5.7 46 158-207 4-49 (105)
33 3osg_A MYB21; transcription-DN 88.0 1.1 3.8E-05 36.3 6.3 49 154-207 7-55 (126)
34 3osg_A MYB21; transcription-DN 87.3 1.3 4.5E-05 35.9 6.3 48 158-213 62-109 (126)
35 1h8a_C AMV V-MYB, MYB transfor 87.0 1.5 5E-05 35.4 6.5 46 157-206 26-71 (128)
36 4eef_G F-HB80.4, designed hema 86.8 0.24 8.2E-06 39.0 1.6 45 160-206 22-67 (74)
37 2k9n_A MYB24; R2R3 domain, DNA 86.2 1.6 5.5E-05 34.3 6.2 47 159-212 2-48 (107)
38 1h8a_C AMV V-MYB, MYB transfor 85.5 1.4 4.8E-05 35.5 5.6 42 158-204 79-120 (128)
39 2crg_A Metastasis associated p 84.0 2.7 9.4E-05 31.5 6.2 46 155-204 5-50 (70)
40 1h89_C C-MYB, MYB proto-oncoge 82.7 2.2 7.4E-05 35.6 5.8 44 157-205 109-152 (159)
41 1h89_C C-MYB, MYB proto-oncoge 81.7 3.1 0.00011 34.6 6.3 47 157-207 57-103 (159)
42 1wgx_A KIAA1903 protein; MYB D 81.3 2.7 9.4E-05 32.5 5.4 45 160-206 10-55 (73)
43 3zqc_A MYB3; transcription-DNA 79.8 2.9 9.8E-05 34.0 5.4 47 159-213 55-101 (131)
44 3zqc_A MYB3; transcription-DNA 77.2 2.6 9E-05 34.2 4.4 46 158-207 2-47 (131)
45 1wh5_A ZF-HD homeobox family p 70.0 12 0.00042 28.3 6.3 62 152-213 15-78 (80)
46 2da3_A Alpha-fetoprotein enhan 66.8 22 0.00074 26.0 7.0 62 152-215 15-76 (80)
47 4a69_C Nuclear receptor corepr 63.3 12 0.0004 29.6 5.2 41 156-201 41-81 (94)
48 2dmt_A Homeobox protein BARH-l 60.5 42 0.0014 24.8 7.6 63 151-215 14-76 (80)
49 2dms_A Homeobox protein OTX2; 60.2 49 0.0017 24.4 8.3 65 152-218 5-69 (80)
50 4b4c_A Chromodomain-helicase-D 58.1 16 0.00054 31.3 5.5 60 154-213 3-62 (211)
51 2cuf_A FLJ21616 protein; homeo 57.3 26 0.0009 26.8 6.2 65 151-217 4-83 (95)
52 2hi3_A Homeodomain-only protei 53.0 49 0.0017 24.0 6.7 68 155-223 3-70 (73)
53 3hug_A RNA polymerase sigma fa 51.3 31 0.001 25.5 5.5 47 164-213 26-83 (92)
54 2kt0_A Nanog, homeobox protein 50.1 69 0.0024 23.6 7.3 64 150-215 18-81 (84)
55 2dmq_A LIM/homeobox protein LH 49.8 70 0.0024 23.3 7.2 62 152-215 5-66 (80)
56 2e1o_A Homeobox protein PRH; D 48.7 71 0.0024 22.8 7.7 62 153-216 6-67 (70)
57 1uhs_A HOP, homeodomain only p 48.5 69 0.0024 23.0 6.9 68 156-224 3-70 (72)
58 1wh7_A ZF-HD homeobox family p 48.2 38 0.0013 25.7 5.6 61 152-213 15-78 (80)
59 2dmu_A Homeobox protein goosec 45.3 81 0.0028 22.5 7.1 62 152-215 5-66 (70)
60 3nar_A ZHX1, zinc fingers and 44.5 38 0.0013 26.0 5.2 61 153-215 24-84 (96)
61 1or7_A Sigma-24, RNA polymeras 42.3 54 0.0018 26.1 6.0 48 163-213 128-186 (194)
62 1fjl_A Paired protein; DNA-bin 41.0 68 0.0023 23.6 6.0 62 151-214 15-76 (81)
63 2dmn_A Homeobox protein TGIF2L 40.6 75 0.0026 23.8 6.2 62 153-214 6-68 (83)
64 3b73_A PHIH1 repressor-like pr 39.3 44 0.0015 26.9 5.0 49 158-209 7-55 (111)
65 1qgp_A Protein (double strande 38.5 41 0.0014 25.1 4.4 44 161-207 11-55 (77)
66 2da1_A Alpha-fetoprotein enhan 36.9 1.1E+02 0.0038 21.7 6.4 62 152-215 5-66 (70)
67 2cue_A Paired box protein PAX6 35.0 1.2E+02 0.0041 22.2 6.5 62 152-215 5-66 (80)
68 2djn_A Homeobox protein DLX-5; 31.0 1E+02 0.0036 22.0 5.4 62 152-215 5-66 (70)
69 1x3u_A Transcriptional regulat 30.9 1E+02 0.0034 21.5 5.3 39 170-212 22-60 (79)
70 1ign_A Protein (RAP1); RAP1,ye 30.6 34 0.0012 32.0 3.4 50 157-208 7-59 (246)
71 2da2_A Alpha-fetoprotein enhan 30.3 1.5E+02 0.005 21.0 7.1 62 152-215 5-66 (70)
72 2cra_A Homeobox protein HOX-B1 29.0 1.6E+02 0.0054 21.0 6.5 62 152-215 5-66 (70)
73 1rp3_A RNA polymerase sigma fa 28.9 83 0.0028 25.6 5.2 47 164-213 176-233 (239)
74 2eqy_A RBP2 like, jumonji, at 28.3 83 0.0029 25.5 5.0 45 163-208 42-93 (122)
75 2da6_A Hepatocyte nuclear fact 27.8 47 0.0016 27.0 3.4 63 152-215 4-86 (102)
76 2xsd_C POU domain, class 3, tr 26.5 82 0.0028 26.7 4.8 64 151-216 96-159 (164)
77 3hm5_A DNA methyltransferase 1 26.3 2.4E+02 0.0081 22.6 7.2 42 159-203 31-75 (93)
78 1nk2_P Homeobox protein VND; h 26.0 1.9E+02 0.0065 21.0 7.0 62 152-215 7-68 (77)
79 3a01_A Homeodomain-containing 25.4 2.2E+02 0.0076 21.6 9.1 66 150-217 13-78 (93)
80 1x2n_A Homeobox protein pknox1 25.1 1.9E+02 0.0065 20.6 7.2 63 153-215 6-69 (73)
81 2gmg_A Hypothetical protein PF 25.0 74 0.0025 26.3 4.1 47 166-215 13-60 (105)
82 1ofc_X ISWI protein; nuclear p 23.9 1.2E+02 0.004 28.9 5.8 54 154-211 106-159 (304)
83 3mzy_A RNA polymerase sigma-H 22.6 1.2E+02 0.004 23.1 4.6 49 162-213 95-154 (164)
84 2q1z_A RPOE, ECF SIGE; ECF sig 22.5 42 0.0014 26.6 2.1 49 163-214 123-182 (184)
85 3c57_A Two component transcrip 22.3 89 0.003 23.4 3.9 32 179-213 41-72 (95)
86 1je8_A Nitrate/nitrite respons 21.2 1.4E+02 0.0049 21.7 4.7 31 179-212 35-65 (82)
87 2da4_A Hypothetical protein DK 20.5 2.5E+02 0.0086 20.4 6.6 63 153-215 7-71 (80)
88 1au7_A Protein PIT-1, GHF-1; c 20.3 1.4E+02 0.0046 24.7 4.9 61 152-214 85-145 (146)
89 1b72_B Protein (PBX1); homeodo 20.1 2.1E+02 0.0073 21.0 5.5 60 155-215 2-63 (87)
No 1
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=99.96 E-value=2.2e-30 Score=197.91 Aligned_cols=62 Identities=58% Similarity=1.017 Sum_probs=60.0
Q ss_pred CCCCCCeecChHHHHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHHHHHHhhhhHHHHhhh
Q 047187 153 TLKRPRLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLKRM 214 (339)
Q Consensus 153 ~~kKpRl~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V~GLTr~nVkSHLQKYRl~lkR~ 214 (339)
+.+|+|++||+|||++||+||++||.++|+||+||++|+|+|||++||||||||||++++|.
T Consensus 2 ~~~k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR~~l~r~ 63 (64)
T 1irz_A 2 AQKKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFRVALKKV 63 (64)
T ss_dssp CCCCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHSC
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHHHHHHHcc
Confidence 47899999999999999999999999999999999999999999999999999999999985
No 2
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.46 E-value=0.00039 Score=52.19 Aligned_cols=56 Identities=21% Similarity=0.301 Sum_probs=46.7
Q ss_pred CCCeecChHHHHHHHHHHHHhCCCC---CChHHHHHhhCCCCCCHHHHHHHhhhhHHHHhh
Q 047187 156 RPRLVWTPQLHKRFVDVVAHLGIKN---AVPKTIMQLMNVEGLTRENVASHLQKYRLYLKR 213 (339)
Q Consensus 156 KpRl~WT~ELH~rFVeAV~qLG~dk---AtPK~ILelM~V~GLTr~nVkSHLQKYRl~lkR 213 (339)
..+-.||+|.+++|+++|.++|.+. -.++.|-+.| ++-|..||+.|-|||...+.+
T Consensus 6 ~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~--~~Rt~~qcr~r~~~~l~~~~k 64 (75)
T 2yum_A 6 SGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADEL--GNRTAKQVASQVQKYFIKLTK 64 (75)
T ss_dssp CCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHH--SSSCHHHHHHHHHHHHGGGST
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHh--CCCCHHHHHHHHHHHHHHHHh
Confidence 3455899999999999999999533 3589998887 479999999999999876544
No 3
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=97.42 E-value=0.00067 Score=50.89 Aligned_cols=54 Identities=20% Similarity=0.160 Sum_probs=45.9
Q ss_pred CCCeecChHHHHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHHHHHHhhhhHHHHhhh
Q 047187 156 RPRLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLKRM 214 (339)
Q Consensus 156 KpRl~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V~GLTr~nVkSHLQKYRl~lkR~ 214 (339)
..+-.||+|.+++|+++|.++|. .++.|-++| +|-|..+|+.|-++|.....+.
T Consensus 7 ~~~~~WT~eEd~~l~~~~~~~G~---~W~~Ia~~~--~~Rt~~q~k~r~~~~l~~~~~~ 60 (72)
T 2cu7_A 7 GYSVKWTIEEKELFEQGLAKFGR---RWTKISKLI--GSRTVLQVKSYARQYFKNKVKC 60 (72)
T ss_dssp SCCCCCCHHHHHHHHHHHHHTCS---CHHHHHHHH--SSSCHHHHHHHHHHHHHHHSCS
T ss_pred cCCCCCCHHHHHHHHHHHHHHCc---CHHHHHHHc--CCCCHHHHHHHHHHHHHHHHhc
Confidence 34668999999999999999997 499999876 6799999999999987665443
No 4
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=97.14 E-value=0.0013 Score=51.07 Aligned_cols=50 Identities=10% Similarity=0.108 Sum_probs=42.8
Q ss_pred CCCCCeecChHHHHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHHHHHHhhhhH
Q 047187 154 LKRPRLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYR 208 (339)
Q Consensus 154 ~kKpRl~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V~GLTr~nVkSHLQKYR 208 (339)
....+-.||+|.+++|++||+++| . -++.|-++|+ +-|..||+.|-++|-
T Consensus 14 ~~~~~~~WT~eEd~~Ll~~v~~~G-~--~W~~IA~~v~--~RT~~qcr~r~~~~~ 63 (79)
T 2yus_A 14 GASAGREWTEQETLLLLEALEMYK-D--DWNKVSEHVG--SRTQDECILHFLRLP 63 (79)
T ss_dssp SSCCSCCCCHHHHHHHHHHHHHSS-S--CHHHHHHHHS--SCCHHHHHHHHTTSC
T ss_pred ccccCCCcCHHHHHHHHHHHHHhC-C--CHHHHHHHcC--CCCHHHHHHHHHHhc
Confidence 344567899999999999999999 3 3999999986 699999999988773
No 5
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=96.70 E-value=0.0052 Score=44.61 Aligned_cols=49 Identities=24% Similarity=0.322 Sum_probs=41.8
Q ss_pred CCCeecChHHHHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHHHHHHhhhhH
Q 047187 156 RPRLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYR 208 (339)
Q Consensus 156 KpRl~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V~GLTr~nVkSHLQKYR 208 (339)
-.|-.||+|..+++++||+++|..+ ++.|-+.| ++-|..|++.|-++|-
T Consensus 6 ~~~~~WT~eED~~L~~~v~~~G~~~--W~~Ia~~~--~~Rt~~qcr~r~~~~l 54 (60)
T 1x41_A 6 SGDPSWTAQEEMALLEAVMDCGFGN--WQDVANQM--CTKTKEECEKHYMKYF 54 (60)
T ss_dssp CCCSSSCHHHHHHHHHHHHHTCTTC--HHHHHHHH--TTSCHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcCc--HHHHHHHh--CCCCHHHHHHHHHHHc
Confidence 3456799999999999999999533 99999998 5799999999877764
No 6
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=96.27 E-value=0.0043 Score=57.66 Aligned_cols=53 Identities=15% Similarity=0.247 Sum_probs=46.6
Q ss_pred CCCCCCeecChHHHHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHHHHHHhhhhHHH
Q 047187 153 TLKRPRLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLY 210 (339)
Q Consensus 153 ~~kKpRl~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V~GLTr~nVkSHLQKYRl~ 210 (339)
...|..-+||+|.++.|++|+..+|-+ +..|-+++ .+-|..||++|-++||.+
T Consensus 128 ~~~k~s~~WTeEE~~lFleAl~kYGKD---W~~IAk~V--gTKT~~QcKnfY~~~kKR 180 (235)
T 2iw5_B 128 VIQKCNARWTTEEQLLAVQAIRKYGRD---FQAISDVI--GNKSVVQVKNFFVNYRRR 180 (235)
T ss_dssp CCCCCCSSCCHHHHHHHHHHHHHHSSC---HHHHHHHH--SSCCHHHHHHHHHHTTTT
T ss_pred CCCccCCCCCHHHHHHHHHHHHHHCcC---HHHHHHHc--CCCCHHHHHHHHHHHHHH
Confidence 345678899999999999999999965 99999885 569999999999999865
No 7
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=96.23 E-value=0.013 Score=43.58 Aligned_cols=52 Identities=15% Similarity=0.134 Sum_probs=43.5
Q ss_pred CCCeecChHHHHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHHHHHHhhhhHHHHh
Q 047187 156 RPRLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLK 212 (339)
Q Consensus 156 KpRl~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V~GLTr~nVkSHLQKYRl~lk 212 (339)
+.|-.||+|.-++++++|+++|..+ ++.|.+.+.+.+-|-.|++ .+||..+|
T Consensus 9 ~kk~~WT~eED~~L~~~V~~~G~~~--W~~Ia~~~~~~~Rt~~qcr---~Rw~nl~k 60 (64)
T 3sjm_A 9 TKKQKWTVEESEWVKAGVQKYGEGN--WAAISKNYPFVNRTAVMIK---DRWRTMKR 60 (64)
T ss_dssp -CCCCCCHHHHHHHHHHHHHHCTTC--HHHHHHHSCCSSCCHHHHH---HHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHccCCCc--hHHHHhhcCCCCCCHHHHH---HHHHHHhc
Confidence 3456799999999999999999543 9999999888899999997 56777655
No 8
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=96.15 E-value=0.006 Score=61.36 Aligned_cols=52 Identities=15% Similarity=0.238 Sum_probs=46.4
Q ss_pred CCCCeecChHHHHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHHHHHHhhhhHHHH
Q 047187 155 KRPRLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYL 211 (339)
Q Consensus 155 kKpRl~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V~GLTr~nVkSHLQKYRl~l 211 (339)
.|...+||++.|..|++||.+.|-+ ++.|-+.++. -|..||++|-+|||.++
T Consensus 377 ~~~~~~WT~eE~~~f~~al~~yGkd---w~~IA~~VgT--KT~~Qvk~fy~~~kkr~ 428 (482)
T 2xag_B 377 QKCNARWTTEEQLLAVQAIRKYGRD---FQAISDVIGN--KSVVQVKNFFVNYRRRF 428 (482)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHTTC---HHHHHHHHSS--CCHHHHHHHHHHTTTTT
T ss_pred cccCCCCCHHHHHHHHHHHHHHCcC---HHHHHHHhCC--CCHHHHHHHHHHHHHHh
Confidence 4567899999999999999999965 9999999876 79999999999999753
No 9
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=95.95 E-value=0.016 Score=41.92 Aligned_cols=49 Identities=20% Similarity=0.282 Sum_probs=41.7
Q ss_pred CeecChHHHHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHHHHHHhhhhHH
Q 047187 158 RLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRL 209 (339)
Q Consensus 158 Rl~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V~GLTr~nVkSHLQKYRl 209 (339)
+-.||+|..+++++||+++|..+ ++.|-+.|+. +.|..|++.|-++|.+
T Consensus 9 ~~~WT~eED~~L~~~v~~~G~~~--W~~IA~~~~~-~Rt~~qcr~r~~~~~~ 57 (58)
T 2elk_A 9 DENWGADEELLLIDACETLGLGN--WADIADYVGN-ARTKEECRDHYLKTYI 57 (58)
T ss_dssp CCCCCHHHHHHHHHHHHHTTTTC--HHHHHHHHCS-SCCHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHHHCcCC--HHHHHHHHCC-CCCHHHHHHHHHHHcc
Confidence 34699999999999999999543 9999999862 6999999999888754
No 10
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=95.75 E-value=0.022 Score=43.66 Aligned_cols=48 Identities=10% Similarity=0.152 Sum_probs=39.6
Q ss_pred CeecChHHHHHHHHHHHHhCCC-CCChHHHHHhhCCCCCCHHHHHHHhhhhH
Q 047187 158 RLVWTPQLHKRFVDVVAHLGIK-NAVPKTIMQLMNVEGLTRENVASHLQKYR 208 (339)
Q Consensus 158 Rl~WT~ELH~rFVeAV~qLG~d-kAtPK~ILelM~V~GLTr~nVkSHLQKYR 208 (339)
+-.||.|-+++|+.|+.+++.+ .-.+.+|-+.| |-|.++|+.|-++..
T Consensus 8 ~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l---gRt~~eV~~~y~~L~ 56 (72)
T 2cqq_A 8 APEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL---GRSVTDVTTKAKQLK 56 (72)
T ss_dssp CCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH---TSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh---CCCHHHHHHHHHHHH
Confidence 3469999999999999999843 34588999887 589999999866653
No 11
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=95.70 E-value=0.035 Score=41.08 Aligned_cols=55 Identities=18% Similarity=0.158 Sum_probs=46.3
Q ss_pred CCCCCCeecChHHHHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHHHHHHhhhhHHHHh
Q 047187 153 TLKRPRLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLK 212 (339)
Q Consensus 153 ~~kKpRl~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V~GLTr~nVkSHLQKYRl~lk 212 (339)
..++.|-.||+|.-.+.+++|+++|.. .++.|.+.|...|-|-.|++- +|+.+|+
T Consensus 5 ~~~~~r~~WT~eED~~L~~~v~~~G~~--~W~~Ia~~~~~~~Rt~~qcr~---Rw~~~l~ 59 (69)
T 1ity_A 5 HRARKRQAWLWEEDKNLRSGVRKYGEG--NWSKILLHYKFNNRTSVMLKD---RWRTMKK 59 (69)
T ss_dssp TCSSSCCCCCHHHHHHHHHHHHHHCSS--CHHHHHHHSCCSSCCHHHHHH---HHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCC--cHHHHHHHcCcCCCCHHHHHH---HHHHHcC
Confidence 466778899999999999999999953 399999999766899999985 5776666
No 12
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=95.36 E-value=0.053 Score=38.88 Aligned_cols=50 Identities=12% Similarity=0.191 Sum_probs=40.7
Q ss_pred CCCCCeecChHHHHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHHHHHHhhhh
Q 047187 154 LKRPRLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKY 207 (339)
Q Consensus 154 ~kKpRl~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V~GLTr~nVkSHLQKY 207 (339)
+...|-.||+|..++++++|.++|..+ ++.|.+.| ++-|..|++.+-++|
T Consensus 4 p~~~k~~Wt~eED~~L~~~v~~~G~~~--W~~Ia~~~--~~Rt~~qcr~Rw~~~ 53 (60)
T 2d9a_A 4 GSSGKVKWTHEEDEQLRALVRQFGQQD--WKFLASHF--PNRTDQQCQYRWLRV 53 (60)
T ss_dssp CCCCCSCCCHHHHHHHHHHHHHTCTTC--HHHHHHHC--SSSCHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCC--HHHHHHHc--cCCCHHHHHHHHHHH
Confidence 344577899999999999999999422 99999986 579999998765544
No 13
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=94.84 E-value=0.077 Score=43.54 Aligned_cols=58 Identities=14% Similarity=0.159 Sum_probs=47.9
Q ss_pred cCCCCCCeecChHHHHHHHHHHHHhCCCCCChHHHHHhhC--CCCCCHHHHHHHhhhhHHHHhhh
Q 047187 152 RTLKRPRLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMN--VEGLTRENVASHLQKYRLYLKRM 214 (339)
Q Consensus 152 ~~~kKpRl~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~--V~GLTr~nVkSHLQKYRl~lkR~ 214 (339)
...++.|-.||+|.-...+++|+++|..+ ++.|++.+. .++-|..++| .|||..+++.
T Consensus 7 ~~~rr~r~~WT~EEd~~L~~gV~k~G~g~--W~~I~~~~~~~f~~RT~v~lK---drWrnllk~~ 66 (105)
T 2aje_A 7 DPQRRIRRPFSVAEVEALVQAVEKLGTGR--WRDVKLCAFEDADHRTYVDLK---DKWKTLVHTA 66 (105)
T ss_dssp --CCCCCCSCCHHHHHHHHHHHHHHCSSS--HHHHHSSSSSSTTCCCHHHHH---HHHHHHHHTT
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhCCCC--hHHHHHHhccccCCCCHHHHH---HHHHHHHhhc
Confidence 35778899999999999999999999633 999998763 4899999999 5788887754
No 14
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=94.82 E-value=0.07 Score=37.14 Aligned_cols=46 Identities=20% Similarity=0.250 Sum_probs=38.8
Q ss_pred CeecChHHHHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHHHHHHhhhh
Q 047187 158 RLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKY 207 (339)
Q Consensus 158 Rl~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V~GLTr~nVkSHLQKY 207 (339)
|-.||+|..++++++|.++|.. .++.|.+.| +|-|..+++.+-++|
T Consensus 3 ~~~Wt~eED~~L~~~v~~~G~~--~W~~Ia~~~--~~Rt~~qcr~Rw~~~ 48 (52)
T 1guu_A 3 KTRWTREEDEKLKKLVEQNGTD--DWKVIANYL--PNRTDVQCQHRWQKV 48 (52)
T ss_dssp CCCCCHHHHHHHHHHHHHHCSS--CHHHHHHTS--TTCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCC--CHHHHHHHc--CCCCHHHHHHHHHHH
Confidence 5579999999999999999952 399999886 589999999775554
No 15
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=94.64 E-value=0.074 Score=37.09 Aligned_cols=46 Identities=17% Similarity=0.295 Sum_probs=38.6
Q ss_pred CeecChHHHHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHHHHHHhhhh
Q 047187 158 RLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKY 207 (339)
Q Consensus 158 Rl~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V~GLTr~nVkSHLQKY 207 (339)
|-.||+|..++++++|.++|.. .++.|.+.| +|-|..+++.|-++|
T Consensus 3 k~~Wt~eED~~L~~~v~~~G~~--~W~~Ia~~~--~~Rt~~qcr~Rw~~~ 48 (52)
T 1gvd_A 3 KGPWTKEEDQRLIKLVQKYGPK--RWSVIAKHL--KGRIGKQCRERWHNH 48 (52)
T ss_dssp CCSCCHHHHHHHHHHHHHHCTT--CHHHHHTTS--TTCCHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHCcC--hHHHHHHHc--CCCCHHHHHHHHHHH
Confidence 4579999999999999999953 399998887 689999998775554
No 16
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.63 E-value=0.18 Score=36.82 Aligned_cols=51 Identities=12% Similarity=0.201 Sum_probs=42.0
Q ss_pred CCeecChHHHHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHHHHHHhhhhHHHHhh
Q 047187 157 PRLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLKR 213 (339)
Q Consensus 157 pRl~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V~GLTr~nVkSHLQKYRl~lkR 213 (339)
.+-.||+|..++++++++++|. .+..|-+++ |-|-.+|+.|-++|-....+
T Consensus 8 ~k~~WT~eED~~L~~~~~~~g~---~W~~Ia~~~---gRt~~qcr~Rw~~~l~~~~~ 58 (66)
T 2din_A 8 KKTEWSREEEEKLLHLAKLMPT---QWRTIAPII---GRTAAQCLEHYEFLLDKAAQ 58 (66)
T ss_dssp SCCCCCHHHHHHHHHHHHHCTT---CHHHHHHHH---SSCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCC---CHHHHhccc---CcCHHHHHHHHHHHhChHhc
Confidence 4557999999999999999996 499999965 59999999998777554433
No 17
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=94.56 E-value=0.19 Score=38.62 Aligned_cols=48 Identities=10% Similarity=0.118 Sum_probs=37.5
Q ss_pred CeecChHHHHHHHHHHHHhCCCC-CChHHHHHhhCCCCCCHHHHHHHhhhh
Q 047187 158 RLVWTPQLHKRFVDVVAHLGIKN-AVPKTIMQLMNVEGLTRENVASHLQKY 207 (339)
Q Consensus 158 Rl~WT~ELH~rFVeAV~qLG~dk-AtPK~ILelM~V~GLTr~nVkSHLQKY 207 (339)
+-.||.+..++|++||.++|.+. -.+.+|-++| +|-|..+|+.|-+++
T Consensus 18 ~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~v--pGRT~~qcr~Ry~~L 66 (73)
T 2cqr_A 18 EEPWTQNQQKLLELALQQYPRGSSDCWDKIARCV--PSKSKEDCIARYKLL 66 (73)
T ss_dssp SCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGC--SSSCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHc--CCCCHHHHHHHHHHH
Confidence 45699999999999999999431 2366666555 689999999986654
No 18
>2hzd_A Transcriptional enhancer factor TEF-1; DNA-binding, helix-turn-helix, gene regulation; NMR {Homo sapiens}
Probab=94.55 E-value=0.024 Score=45.31 Aligned_cols=55 Identities=24% Similarity=0.334 Sum_probs=37.7
Q ss_pred CCeecChHHHHHHHHHHHHhCCCCCChHHHH------------------HhhCCCCCCHHHHHHHhhhhHHHHhh
Q 047187 157 PRLVWTPQLHKRFVDVVAHLGIKNAVPKTIM------------------QLMNVEGLTRENVASHLQKYRLYLKR 213 (339)
Q Consensus 157 pRl~WT~ELH~rFVeAV~qLG~dkAtPK~IL------------------elM~V~GLTr~nVkSHLQKYRl~lkR 213 (339)
..-+|.++|-+.|++|++.+-... +-|.+| ..-+ .--|+.||.||||--+...+|
T Consensus 5 ~e~vW~~~lE~aF~eaL~~yp~~g-~~k~~ls~~gk~~gRNelIs~yI~~~tG-k~RtrKQVSShiQvlk~~~~~ 77 (82)
T 2hzd_A 5 AEGVWSPDIEQSFQEALSIYPPCG-RRKIILSDEGKMYGRNELIARYIKLRTG-KTRTRKQVSSHIQVLARRKSR 77 (82)
T ss_dssp GSCCSCHHHHHHHHHHHHHSCSSS-CCCCCHHHHCCCCCTHHHHHHHHHHHHS-CCCCSHHHHHHHHHHHHHHTT
T ss_pred cCCcCCHHHHHHHHHHHHHcCCCC-ccceeecccccccchhHHHHHHHHHHHc-ccCCccchhHHHHHHHHHHhh
Confidence 456899999999999999765211 112212 1111 457999999999998876554
No 19
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.54 E-value=0.13 Score=37.60 Aligned_cols=49 Identities=18% Similarity=0.129 Sum_probs=38.7
Q ss_pred CCCCCeecChHHHHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHHHHHHhhhhHHH
Q 047187 154 LKRPRLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLY 210 (339)
Q Consensus 154 ~kKpRl~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V~GLTr~nVkSHLQKYRl~ 210 (339)
.++..-.||+|.|+.|++|+.+.|-+ ...|.++| ++-|..+|.. .|-+.
T Consensus 8 ~r~~~~~WT~eE~~~F~~~~~~~gk~---w~~Ia~~l--~~rt~~~~v~---~Yy~~ 56 (61)
T 2eqr_A 8 DRQFMNVWTDHEKEIFKDKFIQHPKN---FGLIASYL--ERKSVPDCVL---YYYLT 56 (61)
T ss_dssp CCSCCCSCCHHHHHHHHHHHHHSTTC---HHHHHHHC--TTSCHHHHHH---HHHHH
T ss_pred ccccCCCCCHHHHHHHHHHHHHhCCC---HHHHHHHc--CCCCHHHHHH---HHHHh
Confidence 44567789999999999999999932 88998664 6799999864 45554
No 20
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=94.21 E-value=0.15 Score=42.84 Aligned_cols=57 Identities=21% Similarity=0.232 Sum_probs=48.1
Q ss_pred CCCCCCeecChHHHHHHHHHHHHhCCCCCChHHHHHhh--CCCCCCHHHHHHHhhhhHHHHhhh
Q 047187 153 TLKRPRLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLM--NVEGLTRENVASHLQKYRLYLKRM 214 (339)
Q Consensus 153 ~~kKpRl~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM--~V~GLTr~nVkSHLQKYRl~lkR~ 214 (339)
..+|.|-.||+|.-+..+++|+++|..+ ++.|++.+ ..++-|..++| .|||..+++.
T Consensus 26 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~--W~~I~~~~~~~~~~RT~vdlK---dRWrnllk~~ 84 (122)
T 2roh_A 26 GQRRIRRPFTVAEVELLVEAVEHLGTGR--WRDVKFRAFENVHHRTYVDLK---DKWKTLVHTA 84 (122)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHHSSSC--HHHHHHHHHSSSCCCCHHHHH---HHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCC--hHHHHHHhccccCCCCHHHHH---HHHHHHHhhc
Confidence 4667788999999999999999999633 99999876 35899999999 6899888754
No 21
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=93.74 E-value=0.21 Score=35.10 Aligned_cols=50 Identities=18% Similarity=0.166 Sum_probs=41.0
Q ss_pred CeecChHHHHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHHHHHHhhhhHHHHh
Q 047187 158 RLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLK 212 (339)
Q Consensus 158 Rl~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V~GLTr~nVkSHLQKYRl~lk 212 (339)
|-.||+|..++.+++|+.+|.. .++.|.+.|...+-|-.+++- +|+..+|
T Consensus 2 r~~WT~eEd~~L~~~v~~~G~~--~W~~Ia~~~~~~~Rt~~qcr~---Rw~~~~k 51 (53)
T 1w0t_A 2 RQAWLWEEDKNLRSGVRKYGEG--NWSKILLHYKFNNRTSVMLKD---RWRTMKK 51 (53)
T ss_dssp CCCCCHHHHHHHHHHHHHHCTT--CHHHHHHHSCCSSCCHHHHHH---HHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHCcC--CHHHHHHHcCCCCCCHHHHHH---HHHHHHc
Confidence 4579999999999999999953 399999998766889999985 4555544
No 22
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.65 E-value=0.21 Score=36.81 Aligned_cols=50 Identities=12% Similarity=0.145 Sum_probs=40.3
Q ss_pred CCCCCeecChHHHHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHHHHHHhhhh
Q 047187 154 LKRPRLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKY 207 (339)
Q Consensus 154 ~kKpRl~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V~GLTr~nVkSHLQKY 207 (339)
+...|-.||+|.-++++++|.++|.. .++.|-+.|. +-|..|++-+-++|
T Consensus 5 ~~~k~~~Wt~eED~~L~~~v~~~G~~--~W~~Ia~~l~--~Rt~~qcr~Rw~~~ 54 (70)
T 2dim_A 5 SSGKGGVWRNTEDEILKAAVMKYGKN--QWSRIASLLH--RKSAKQCKARWYEW 54 (70)
T ss_dssp SCSTTCCCCHHHHHHHHHHHHHTCSS--CHHHHHHHST--TCCHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCcC--CHHHHHHHhc--CCCHHHHHHHHHHH
Confidence 33456789999999999999999943 3999999986 79999998654443
No 23
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.19 E-value=0.38 Score=35.44 Aligned_cols=50 Identities=18% Similarity=0.214 Sum_probs=37.5
Q ss_pred CCCCCeecChHHHHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHHHHHHhhhhHHH
Q 047187 154 LKRPRLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLY 210 (339)
Q Consensus 154 ~kKpRl~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V~GLTr~nVkSHLQKYRl~ 210 (339)
++..+-.||+|.+++|.+|+.+.|-+ ...|.+.| |+.-|..+|. |-|-+.
T Consensus 5 p~~~~~~WT~eE~~~Fe~~l~~yGKd---f~~I~~~~-v~~Kt~~~~v---~fYY~w 54 (63)
T 2yqk_A 5 SSGIEKCWTEDEVKRFVKGLRQYGKN---FFRIRKEL-LPNKETGELI---TFYYYW 54 (63)
T ss_dssp CCCCCCSCCHHHHHHHHHHHHHTCSC---HHHHHHHS-CTTSCHHHHH---HHHHHH
T ss_pred CCcCCCCcCHHHHHHHHHHHHHhCcc---HHHHHHHH-cCCCcHHHHH---HHHhcc
Confidence 44456789999999999999999954 77886622 4568888885 555554
No 24
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=93.16 E-value=0.19 Score=40.27 Aligned_cols=53 Identities=21% Similarity=0.226 Sum_probs=43.2
Q ss_pred eecChHHHHHHHHHHHHhCCC-CCChHHHHHhhCCCCCCHHHHHHHhhhhHHHHhh
Q 047187 159 LVWTPQLHKRFVDVVAHLGIK-NAVPKTIMQLMNVEGLTRENVASHLQKYRLYLKR 213 (339)
Q Consensus 159 l~WT~ELH~rFVeAV~qLG~d-kAtPK~ILelM~V~GLTr~nVkSHLQKYRl~lkR 213 (339)
-.||.|..+.|++|+.++|.+ .-.+.+|-+.+ +|-|.++|+.|-+++...++.
T Consensus 9 ~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~v--pGRT~~q~k~ry~~l~~dv~~ 62 (93)
T 2cjj_A 9 RPWSAKENKAFERALAVYDKDTPDRWANVARAV--EGRTPEEVKKHYEILVEDIKY 62 (93)
T ss_dssp CSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHS--TTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHc--CCCCHHHHHHHHHHHHHHHHH
Confidence 469999999999999999844 23488888776 589999999998887765543
No 25
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=92.24 E-value=0.27 Score=38.31 Aligned_cols=48 Identities=21% Similarity=0.409 Sum_probs=39.1
Q ss_pred CeecChHHHHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHHHHHHhhhhHHHHhh
Q 047187 158 RLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLKR 213 (339)
Q Consensus 158 Rl~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V~GLTr~nVkSHLQKYRl~lkR 213 (339)
+-.||+|....++++|.++|.. +..|-+.| +|-|..+|+.| |+..++|
T Consensus 56 ~~~Wt~eEd~~L~~~~~~~G~~---W~~Ia~~l--~gRt~~~~k~r---w~~~~~~ 103 (105)
T 1gv2_A 56 KTSWTEEEDRIIYQAHKRLGNR---WAEIAKLL--PGRTDNAIKNH---WNSTMRR 103 (105)
T ss_dssp CCCCCHHHHHHHHHHHHHHSSC---HHHHHTTC--TTCCHHHHHHH---HHHHTC-
T ss_pred ccCCCHHHHHHHHHHHHHhCCC---HHHHHHHc--CCCCHHHHHHH---HHHHHhc
Confidence 5579999999999999999953 99998864 78999999987 4444443
No 26
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=92.22 E-value=0.35 Score=40.61 Aligned_cols=57 Identities=16% Similarity=0.211 Sum_probs=48.0
Q ss_pred CCCCCCeecChHHHHHHHHHHHHhCCCCCChHHHHHhhC--CCCCCHHHHHHHhhhhHHHHhhh
Q 047187 153 TLKRPRLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMN--VEGLTRENVASHLQKYRLYLKRM 214 (339)
Q Consensus 153 ~~kKpRl~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~--V~GLTr~nVkSHLQKYRl~lkR~ 214 (339)
..++.|-.||+|.-+..+++|+++|..+ ++.|++.+. .++-|-.++|. |||..+++.
T Consensus 12 ~~rr~r~~WT~EEd~~L~~gV~k~G~G~--W~~Ia~~~~~~f~~RT~v~lKd---RWrnllk~~ 70 (121)
T 2juh_A 12 SQRRIRRPFSVAEVEALVEAVEHLGTGR--WRDVKMRAFDNADHRTYVDLKD---KWKTLVHTA 70 (121)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHHHHGGGC--HHHHHHHHCSCCSSCCSHHHHH---HHHHHHHHH
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHHCCCC--HHHHHHHhccccCCCCHHHHHH---HHHHHHhhh
Confidence 4677889999999999999999999533 999999875 48999999994 788877653
No 27
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=92.09 E-value=0.48 Score=37.38 Aligned_cols=48 Identities=15% Similarity=0.179 Sum_probs=40.8
Q ss_pred CeecChHHHHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHHHHHHhhhhHHH
Q 047187 158 RLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLY 210 (339)
Q Consensus 158 Rl~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V~GLTr~nVkSHLQKYRl~ 210 (339)
+-.||+|....++++|.++|.. +..|-+.| +|-|..+|+.|-..+...
T Consensus 53 ~~~WT~eEd~~L~~~~~~~G~~---W~~Ia~~l--~gRt~~~~k~rw~~l~r~ 100 (107)
T 2k9n_A 53 TDPWSPEEDMLLDQKYAEYGPK---WNKISKFL--KNRSDNNIRNRWMMIARH 100 (107)
T ss_dssp TCCCCHHHHHHHHHHHHHTCSC---HHHHHHHH--SSSCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHHHHhCcC---HHHHHHHC--CCCCHHHHHHHHHHHHhh
Confidence 4589999999999999999963 99999887 789999999886655443
No 28
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=91.96 E-value=0.43 Score=37.43 Aligned_cols=51 Identities=14% Similarity=0.190 Sum_probs=42.3
Q ss_pred ecChHHHHHHHHHHHHhCCCCCChHHHHHhhC--CCCCCHHHHHHHhhhhHHHHhhhc
Q 047187 160 VWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMN--VEGLTRENVASHLQKYRLYLKRMQ 215 (339)
Q Consensus 160 ~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~--V~GLTr~nVkSHLQKYRl~lkR~~ 215 (339)
.||+|.-+..+++|+++|..+ ++.|++.-. +++-|-.++|. |||..+++..
T Consensus 2 ~WT~eEd~~L~~gv~k~G~g~--W~~I~~~~~~~~~~RT~~~lKd---rWrnllk~~~ 54 (83)
T 2ckx_A 2 PFSVAEVEALVEAVEHLGTGR--WRDVKMRAFDNADHRTYVDLKD---KWKTLVHTAS 54 (83)
T ss_dssp CCCHHHHHHHHHHHHHHCSSC--HHHHHHHHCTTCTTSCHHHHHH---HHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCC--cHHHHHhhccccCCCCHHHHHH---HHHHHHHhcc
Confidence 499999999999999999633 999998633 58999999995 7888776543
No 29
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=89.86 E-value=1.2 Score=33.83 Aligned_cols=53 Identities=17% Similarity=0.158 Sum_probs=44.2
Q ss_pred CCCCeecChHHHHHHHHHHHHhCCCCCChHHHHHhhC-CCCCCHHHHHHHhhhhHHHHhh
Q 047187 155 KRPRLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMN-VEGLTRENVASHLQKYRLYLKR 213 (339)
Q Consensus 155 kKpRl~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~-V~GLTr~nVkSHLQKYRl~lkR 213 (339)
.+.|-.||+|.-+..++.|+++|. .++.|+.--. .++.|.-+||. |||...|+
T Consensus 5 ~~~r~~WT~EE~~~L~~gV~k~G~---~W~~I~~~y~f~~~RT~VdLKd---k~r~L~k~ 58 (62)
T 1x58_A 5 SSGRKDFTKEEVNYLFHGVKTMGN---HWNSILWSFPFQKGRRAVDLAH---KYHRLISG 58 (62)
T ss_dssp CCCSSSCCHHHHHHHHHHHHHHCS---CHHHHHHHSCCCTTCCHHHHHH---HHHHHHTC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHhH---hHHHHHHhCCCccCcccchHHH---HHHHHHhc
Confidence 456888999999999999999996 3999996433 57899999994 89987664
No 30
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=89.70 E-value=0.73 Score=35.38 Aligned_cols=42 Identities=17% Similarity=0.150 Sum_probs=37.5
Q ss_pred CCeecChHHHHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHHHHHHh
Q 047187 157 PRLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHL 204 (339)
Q Consensus 157 pRl~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V~GLTr~nVkSHL 204 (339)
.|-.||+|.-+.+++++.++|.+ ++.|-+.| |-|-.+|+.+-
T Consensus 22 ~k~~wT~EED~~L~~l~~~~G~k---W~~IA~~l---gRt~~q~knRw 63 (73)
T 2llk_A 22 HVGKYTPEEIEKLKELRIKHGND---WATIGAAL---GRSASSVKDRC 63 (73)
T ss_dssp CCCSSCHHHHHHHHHHHHHHSSC---HHHHHHHH---TSCHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHCCC---HHHHHHHh---CCCHHHHHHHH
Confidence 45689999999999999999965 99999999 89999998763
No 31
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=88.94 E-value=0.069 Score=41.75 Aligned_cols=48 Identities=13% Similarity=0.077 Sum_probs=40.6
Q ss_pred CeecChHHHHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHHHHHHhhhhHHH
Q 047187 158 RLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLY 210 (339)
Q Consensus 158 Rl~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V~GLTr~nVkSHLQKYRl~ 210 (339)
+-.||+|....|+++|..+|.+ +..|-+.| +|-|..+|+.|-+.|...
T Consensus 16 ~~~WT~eEd~~l~~~~~~~G~~---W~~IA~~l--~gRt~~q~k~r~~~~lrk 63 (89)
T 2ltp_A 16 FQGWTEEEMGTAKKGLLEHGRN---WSAIARMV--GSKTVSQCKNFYFNYKKR 63 (89)
Confidence 5579999999999999999964 88998875 689999999997766543
No 32
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=89.30 E-value=0.7 Score=35.96 Aligned_cols=46 Identities=17% Similarity=0.298 Sum_probs=37.9
Q ss_pred CeecChHHHHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHHHHHHhhhh
Q 047187 158 RLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKY 207 (339)
Q Consensus 158 Rl~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V~GLTr~nVkSHLQKY 207 (339)
+-.||+|.-++++++|+.+|..+ ++.|-+.| +|.|..+++.+-++|
T Consensus 4 k~~WT~eED~~L~~~v~~~g~~~--W~~Ia~~l--~~Rt~~qcr~Rw~~~ 49 (105)
T 1gv2_A 4 KGPWTKEEDQRVIKLVQKYGPKR--WSVIAKHL--KGRIGKQCRERWHNH 49 (105)
T ss_dssp CSCCCHHHHHHHHHHHHHHCTTC--HHHHHTTS--TTCCHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCCCc--HHHHhhhh--cCCCHHHHHHHHHhc
Confidence 45799999999999999999643 99999887 689999998654443
No 33
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=87.97 E-value=1.1 Score=36.31 Aligned_cols=49 Identities=16% Similarity=0.171 Sum_probs=39.4
Q ss_pred CCCCCeecChHHHHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHHHHHHhhhh
Q 047187 154 LKRPRLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKY 207 (339)
Q Consensus 154 ~kKpRl~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V~GLTr~nVkSHLQKY 207 (339)
.+..|-.||+|.-++++++|+++|. -++.|.+.| ++-|..+++.+-.+|
T Consensus 7 ~~~kk~~WT~eED~~L~~~v~~~G~---~W~~Ia~~~--~~Rt~~qcr~Rw~~~ 55 (126)
T 3osg_A 7 KAAKKQKFTPEEDEMLKRAVAQHGS---DWKMIAATF--PNRNARQCRDRWKNY 55 (126)
T ss_dssp CBCSSCCCCHHHHHHHHHHHHHHTT---CHHHHHHTC--TTCCHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCC---CHHHHHHHc--CCCCHHHHHHHHhhh
Confidence 3445778999999999999999996 499998886 468998887654443
No 34
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=87.27 E-value=1.3 Score=35.86 Aligned_cols=48 Identities=15% Similarity=0.262 Sum_probs=39.6
Q ss_pred CeecChHHHHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHHHHHHhhhhHHHHhh
Q 047187 158 RLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLKR 213 (339)
Q Consensus 158 Rl~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V~GLTr~nVkSHLQKYRl~lkR 213 (339)
+-.||+|..++++++|.++|.. +..|-+.| +|-|..+|+.+ |+..++|
T Consensus 62 ~~~WT~eEd~~L~~~v~~~G~~---W~~Ia~~l--~gRt~~~~k~r---w~~l~~k 109 (126)
T 3osg_A 62 HTPWTAEEDALLVQKIQEYGRQ---WAIIAKFF--PGRTDIHIKNR---WVTISNK 109 (126)
T ss_dssp CSCCCHHHHHHHHHHHHHHCSC---HHHHHTTS--TTCCHHHHHHH---HHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHCcC---HHHHHHHc--CCCCHHHHHHH---HHHHHHh
Confidence 3469999999999999999954 99998865 68999999976 5555544
No 35
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=87.02 E-value=1.5 Score=35.44 Aligned_cols=46 Identities=17% Similarity=0.296 Sum_probs=37.9
Q ss_pred CCeecChHHHHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHHHHHHhhh
Q 047187 157 PRLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQK 206 (339)
Q Consensus 157 pRl~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V~GLTr~nVkSHLQK 206 (339)
.+-.||+|.-++++++|+.+|..+ ++.|.+.| +|-|..+++.+-++
T Consensus 26 ~k~~Wt~eED~~L~~~v~~~g~~~--W~~Ia~~l--~~Rt~~qcr~Rw~~ 71 (128)
T 1h8a_C 26 NKGPWTKEEDQRVIEHVQKYGPKR--WSDIAKHL--KGRIGKQCRERWHN 71 (128)
T ss_dssp CCSCCCHHHHHHHHHHHHHTCSCC--HHHHHHHS--SSCCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCC--HHHHHHHh--cCCcHHHHHHHHHH
Confidence 356799999999999999999543 99999987 57999999865443
No 36
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=86.83 E-value=0.24 Score=38.99 Aligned_cols=45 Identities=22% Similarity=0.226 Sum_probs=34.9
Q ss_pred ecChHHHHHHHHHHHHhCCC-CCChHHHHHhhCCCCCCHHHHHHHhhh
Q 047187 160 VWTPQLHKRFVDVVAHLGIK-NAVPKTIMQLMNVEGLTRENVASHLQK 206 (339)
Q Consensus 160 ~WT~ELH~rFVeAV~qLG~d-kAtPK~ILelM~V~GLTr~nVkSHLQK 206 (339)
.||.+-.+.|..|+..+..+ .-.+.+|-+. |+|-|.++|+.|-|-
T Consensus 22 ~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~--VpGKT~eEVk~hY~~ 67 (74)
T 4eef_G 22 PWKFSENIAFEIALSFTNKDTPDRWKKVAQY--VKGRTPEEVKKHYEL 67 (74)
T ss_dssp CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGG--SCSSCHHHHHGGGC-
T ss_pred CCCHHHHHHHHHHHHHCCCCCCcHHHHHHHH--cCCCCHHHHHHHHHH
Confidence 59999999999999999733 2346666554 458999999998763
No 37
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=86.23 E-value=1.6 Score=34.33 Aligned_cols=47 Identities=19% Similarity=0.244 Sum_probs=37.7
Q ss_pred eecChHHHHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHHHHHHhhhhHHHHh
Q 047187 159 LVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLK 212 (339)
Q Consensus 159 l~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V~GLTr~nVkSHLQKYRl~lk 212 (339)
-.||+|.-++++++|+.+|.. .++.|-+.|+ +-|..+++. .|+.+|.
T Consensus 2 ~~Wt~eED~~L~~~v~~~g~~--~W~~Ia~~~~--~Rt~~qcr~---Rw~~~L~ 48 (107)
T 2k9n_A 2 VKFTEEEDLKLQQLVMRYGAK--DWIRISQLMI--TRNPRQCRE---RWNNYIN 48 (107)
T ss_dssp CSSCHHHHHHHHHHHHHHCSS--CHHHHHHHTT--TSCHHHHHH---HHHHHSS
T ss_pred CCCCHHHHHHHHHHHHHHCCC--CHHHHhhhcC--CCCHHHHHH---HHHHHHc
Confidence 479999999999999999953 3999999885 789998875 4554443
No 38
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=85.52 E-value=1.4 Score=35.53 Aligned_cols=42 Identities=24% Similarity=0.381 Sum_probs=36.9
Q ss_pred CeecChHHHHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHHHHHHh
Q 047187 158 RLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHL 204 (339)
Q Consensus 158 Rl~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V~GLTr~nVkSHL 204 (339)
+-.||+|..+.++++|.++|.+ +..|-+.| +|-|..+|+.|-
T Consensus 79 ~~~WT~eEd~~L~~~~~~~G~~---W~~Ia~~l--~gRt~~~~k~r~ 120 (128)
T 1h8a_C 79 KTSWTEEEDRIIYQAHKRLGNR---WAEIAKLL--PGRTDNAVKNHW 120 (128)
T ss_dssp CSCCCHHHHHHHHHHHHHHCSC---HHHHGGGS--TTCCHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHCcC---HHHHHHHC--CCCCHHHHHHHH
Confidence 5579999999999999999964 99998875 789999999864
No 39
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=83.98 E-value=2.7 Score=31.54 Aligned_cols=46 Identities=11% Similarity=0.075 Sum_probs=35.4
Q ss_pred CCCCeecChHHHHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHHHHHHh
Q 047187 155 KRPRLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHL 204 (339)
Q Consensus 155 kKpRl~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V~GLTr~nVkSHL 204 (339)
++..-.||+|.++.|.+|+...|-+ -..|.+.| |+.-|..+|..+-
T Consensus 5 r~~~~~WT~eE~~~Fe~~l~~yGKd---f~~I~~~~-v~~Kt~~~~v~fY 50 (70)
T 2crg_A 5 SSGMEEWSASEACLFEEALEKYGKD---FNDIRQDF-LPWKSLTSIIEYY 50 (70)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHTCSC---HHHHHHTT-CSSSCHHHHHHHH
T ss_pred ccCCCCCCHHHHHHHHHHHHHhCcc---HHHHHHHH-cCCCCHHHHHHHH
Confidence 4566789999999999999999955 77786521 5568888876543
No 40
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=82.72 E-value=2.2 Score=35.57 Aligned_cols=44 Identities=20% Similarity=0.362 Sum_probs=37.8
Q ss_pred CCeecChHHHHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHHHHHHhh
Q 047187 157 PRLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQ 205 (339)
Q Consensus 157 pRl~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V~GLTr~nVkSHLQ 205 (339)
.+-.||+|..+.+++++.++|.. +..|.+.| +|-|..+|+.|-.
T Consensus 109 ~~~~WT~eEd~~L~~~~~~~g~~---W~~Ia~~l--~gRt~~~~knr~~ 152 (159)
T 1h89_C 109 KKTSWTEEEDRIIYQAHKRLGNR---WAEIAKLL--PGRTDNAIKNHWN 152 (159)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCSC---HHHHHTTS--TTCCHHHHHHHHH
T ss_pred cccCCChHHHHHHHHHHHHHCCC---HHHHHHHC--CCCCHHHHHHHHH
Confidence 35679999999999999999964 99998864 7999999998743
No 41
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=81.67 E-value=3.1 Score=34.60 Aligned_cols=47 Identities=17% Similarity=0.273 Sum_probs=38.6
Q ss_pred CCeecChHHHHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHHHHHHhhhh
Q 047187 157 PRLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKY 207 (339)
Q Consensus 157 pRl~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V~GLTr~nVkSHLQKY 207 (339)
.+-.||+|.-++++++|+.+|..+ ++.|.+.| +|.|..+++.+-+.|
T Consensus 57 ~~~~Wt~eEd~~L~~~v~~~g~~~--W~~Ia~~l--~~Rt~~qcr~Rw~~~ 103 (159)
T 1h89_C 57 IKGPWTKEEDQRVIKLVQKYGPKR--WSVIAKHL--KGRIGKQCRERWHNH 103 (159)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCSCC--HHHHHHTS--TTCCHHHHHHHHHHT
T ss_pred CCCCCChHHHHHHHHHHHHhCccc--HHHHHHHc--CCCCHHHHHHHHHHH
Confidence 356899999999999999999533 89998887 689999998754443
No 42
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=81.33 E-value=2.7 Score=32.51 Aligned_cols=45 Identities=11% Similarity=0.116 Sum_probs=34.6
Q ss_pred ecChHHHHHHHHHHHHhCCC-CCChHHHHHhhCCCCCCHHHHHHHhhh
Q 047187 160 VWTPQLHKRFVDVVAHLGIK-NAVPKTIMQLMNVEGLTRENVASHLQK 206 (339)
Q Consensus 160 ~WT~ELH~rFVeAV~qLG~d-kAtPK~ILelM~V~GLTr~nVkSHLQK 206 (339)
.||.+-.++|.+|+..++.+ .-.+.+|-+. |+|-|.++|..|-+.
T Consensus 10 ~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~--V~gKT~eE~~~hY~~ 55 (73)
T 1wgx_A 10 EWNEKELQKLHCAFASLPKHKPGFWSEVAAA--VGSRSPEECQRKYME 55 (73)
T ss_dssp CCCHHHHHHHHHHHHHSCSSSSSHHHHHHHH--TTTSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCCCccHHHHHHHH--cCCCCHHHHHHHHHH
Confidence 59999999999999999843 2346667665 467999999866443
No 43
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=79.78 E-value=2.9 Score=33.99 Aligned_cols=47 Identities=21% Similarity=0.391 Sum_probs=38.8
Q ss_pred eecChHHHHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHHHHHHhhhhHHHHhh
Q 047187 159 LVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLKR 213 (339)
Q Consensus 159 l~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V~GLTr~nVkSHLQKYRl~lkR 213 (339)
-.||+|...+++++|.++|.. +..|-++| +|-|..+|+.| |+..|++
T Consensus 55 ~~Wt~eEd~~L~~~~~~~G~~---W~~Ia~~l--~gRt~~~~k~r---w~~~l~~ 101 (131)
T 3zqc_A 55 HAWTPEEDETIFRNYLKLGSK---WSVIAKLI--PGRTDNAIKNR---WNSSISK 101 (131)
T ss_dssp SCCCHHHHHHHHHHHHHSCSC---HHHHTTTS--TTCCHHHHHHH---HHHTTGG
T ss_pred CCCCHHHHHHHHHHHHHHCcC---HHHHHHHc--CCCCHHHHHHH---HHHHHHH
Confidence 369999999999999999964 99998765 68999999976 5555544
No 44
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=77.24 E-value=2.6 Score=34.23 Aligned_cols=46 Identities=11% Similarity=0.049 Sum_probs=36.1
Q ss_pred CeecChHHHHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHHHHHHhhhh
Q 047187 158 RLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKY 207 (339)
Q Consensus 158 Rl~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V~GLTr~nVkSHLQKY 207 (339)
+-.||+|.-++.+++|...|..+ ++.|.+.| +|-|..++.-+-+.|
T Consensus 2 Kg~Wt~eED~~L~~~v~~~g~~~--W~~Ia~~~--~~Rt~~qcr~Rw~~~ 47 (131)
T 3zqc_A 2 KGPFTEAEDDLIREYVKENGPQN--WPRITSFL--PNRSPKQCRERWFNH 47 (131)
T ss_dssp CSSCCHHHHHHHHHHHHHHCSCC--GGGGTTSC--TTSCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCcCC--HHHHHHHH--CCCCHHHHHHHHhhc
Confidence 34699999999999999999533 88887776 578888887554443
No 45
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=70.02 E-value=12 Score=28.26 Aligned_cols=62 Identities=18% Similarity=0.275 Sum_probs=46.2
Q ss_pred cCCCCCCeecChHHHHHHHHHHHHhC--CCCCChHHHHHhhCCCCCCHHHHHHHhhhhHHHHhh
Q 047187 152 RTLKRPRLVWTPQLHKRFVDVVAHLG--IKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLKR 213 (339)
Q Consensus 152 ~~~kKpRl~WT~ELH~rFVeAV~qLG--~dkAtPK~ILelM~V~GLTr~nVkSHLQKYRl~lkR 213 (339)
+..+|.|-..|.+--.....+.+.+| ..........+|...-|||..+|+-=.|.-|.++++
T Consensus 15 ~~~rR~Rt~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~lgL~~~~VkvWFqNrRaK~~~ 78 (80)
T 1wh5_A 15 GIRKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKVWLHNNKHSGPS 78 (80)
T ss_dssp CCSCCCSCCCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHSCCCHHHHHHHHHHHSSSSSC
T ss_pred CCCCCCCccCCHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHhCCCcccccCCccccCcCCCC
Confidence 45788888999986666666666777 334455666677777799999999988888776653
No 46
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=66.79 E-value=22 Score=26.00 Aligned_cols=62 Identities=21% Similarity=0.194 Sum_probs=43.4
Q ss_pred cCCCCCCeecChHHHHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHHHHHHhhhhHHHHhhhc
Q 047187 152 RTLKRPRLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLKRMQ 215 (339)
Q Consensus 152 ~~~kKpRl~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V~GLTr~nVkSHLQKYRl~lkR~~ 215 (339)
...+|.|.+.|.+--. .++.+.+.. ...+...+.+|...-|||..+|+.=.|.-|.+.||..
T Consensus 15 ~~~rr~Rt~ft~~Ql~-~Le~~f~~~-~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 76 (80)
T 2da3_A 15 QRDKRLRTTITPEQLE-ILYQKYLLD-SNPTRKMLDHIAHEVGLKKRVVQVWFQNTRARERKSG 76 (80)
T ss_dssp CCCTTCCSSCCTTTHH-HHHHHHHHC-SSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHSSC
T ss_pred CCCCCCCCCCCHHHHH-HHHHHHHhc-CCCCHHHHHHHHHHHCcCHHHhHHHhHHHHHhHhhhc
Confidence 4567788888887433 344444443 2344566667766678999999999999999988754
No 47
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=63.33 E-value=12 Score=29.63 Aligned_cols=41 Identities=15% Similarity=0.158 Sum_probs=31.8
Q ss_pred CCCeecChHHHHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHHHH
Q 047187 156 RPRLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVA 201 (339)
Q Consensus 156 KpRl~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V~GLTr~nVk 201 (339)
+..-.||+|.|+.|.+++.+.|-+ ..+|.+.+ +..|..++-
T Consensus 41 ~~~~~WT~eE~~~F~~~~~~~gK~---F~~Ia~~l--~~Kt~~~cV 81 (94)
T 4a69_C 41 QVMNMWSEQEKETFREKFMQHPKN---FGLIASFL--ERKTVAECV 81 (94)
T ss_dssp HHTCCCCHHHHHHHHHHHHHSTTC---HHHHHHTC--TTCCHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHcCCC---HHHHHHHc--CCCCHHHHH
Confidence 345679999999999999999943 78886654 557776654
No 48
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=60.49 E-value=42 Score=24.78 Aligned_cols=63 Identities=21% Similarity=0.187 Sum_probs=43.5
Q ss_pred ccCCCCCCeecChHHHHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHHHHHHhhhhHHHHhhhc
Q 047187 151 ARTLKRPRLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLKRMQ 215 (339)
Q Consensus 151 ~~~~kKpRl~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V~GLTr~nVkSHLQKYRl~lkR~~ 215 (339)
.+..+|.|...|.+-... |+.+.+.. .......+.+|...-|||..+|+-=.|.-|.+.||..
T Consensus 14 ~~~~rr~Rt~ft~~Q~~~-Le~~F~~~-~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~ 76 (80)
T 2dmt_A 14 AKKGRRSRTVFTELQLMG-LEKRFEKQ-KYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKKSG 76 (80)
T ss_dssp CCCCCCSCCCCCHHHHHH-HHHHHHHC-SSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSCCC
T ss_pred CCCCCCCCCCCCHHHHHH-HHHHHHhc-CCCCHHHHHHHHHHhCCCHHHeeeccHHHHHHhhccc
Confidence 445778888899864443 33333333 2334566667777778999999999999999887654
No 49
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=60.16 E-value=49 Score=24.36 Aligned_cols=65 Identities=11% Similarity=0.030 Sum_probs=45.7
Q ss_pred cCCCCCCeecChHHHHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHHHHHHhhhhHHHHhhhcCCC
Q 047187 152 RTLKRPRLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLKRMQGLS 218 (339)
Q Consensus 152 ~~~kKpRl~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V~GLTr~nVkSHLQKYRl~lkR~~~l~ 218 (339)
+..+|.|.++|.+--. .++.+.+.. ...+...+.+|...-+||..+|+.=.|.-|.+.||.....
T Consensus 5 ~~~rr~Rt~ft~~Q~~-~Le~~F~~~-~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~rk~~~~~ 69 (80)
T 2dms_A 5 SSGRRERTTFTRAQLD-VLEALFAKT-RYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQQQQ 69 (80)
T ss_dssp CCCCCCCSSCCHHHHH-HHHHHHHHC-SSCCHHHHHHHHHHTTCCHHHHHHHHHHHHTHHHHTTCSC
T ss_pred CCCCCCCCCCCHHHHH-HHHHHHHcc-CCCCHHHHHHHHHHHCcCHHHhhhhhHHHhHHhhHHHHcc
Confidence 3577888899987433 344444433 2344666777777788999999999999999988865443
No 50
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=58.10 E-value=16 Score=31.29 Aligned_cols=60 Identities=7% Similarity=-0.033 Sum_probs=45.9
Q ss_pred CCCCCeecChHHHHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHHHHHHhhhhHHHHhh
Q 047187 154 LKRPRLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLKR 213 (339)
Q Consensus 154 ~kKpRl~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V~GLTr~nVkSHLQKYRl~lkR 213 (339)
++...--||..--++|+.|+..+|.-......|++--...+-|.+.|+...+-+...+.+
T Consensus 3 p~~~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~y~~~f~~~c~~ 62 (211)
T 4b4c_A 3 PRENIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRRLGELVHNGCIK 62 (211)
T ss_dssp -----CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHHHHHHHHHHHHH
T ss_pred CcccCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHH
Confidence 455677899999999999999999433347889887788889999999888887776654
No 51
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=57.35 E-value=26 Score=26.78 Aligned_cols=65 Identities=14% Similarity=0.158 Sum_probs=39.9
Q ss_pred ccCCCCCCeecChHHHHHHHHHHHHhCCCCCChHHHH---HhhC------------CCCCCHHHHHHHhhhhHHHHhhhc
Q 047187 151 ARTLKRPRLVWTPQLHKRFVDVVAHLGIKNAVPKTIM---QLMN------------VEGLTRENVASHLQKYRLYLKRMQ 215 (339)
Q Consensus 151 ~~~~kKpRl~WT~ELH~rFVeAV~qLG~dkAtPK~IL---elM~------------V~GLTr~nVkSHLQKYRl~lkR~~ 215 (339)
.+..+|.|..||++-......+++. . ...+...+. +.++ -..||..+|+.=.|.-|...||..
T Consensus 4 ~~~~rr~R~~ft~~ql~~Le~~F~~-~-~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k~kr~~ 81 (95)
T 2cuf_A 4 GSSGRGSRFTWRKECLAVMESYFNE-N-QYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRRA 81 (95)
T ss_dssp SSCCCCCSCCCCHHHHHHHHHHHHH-C-SSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHhc-C-CCCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHHHHHHHHHHHHHHHh
Confidence 3457889999999754443333333 2 112223333 3333 123999999999999998888765
Q ss_pred CC
Q 047187 216 GL 217 (339)
Q Consensus 216 ~l 217 (339)
..
T Consensus 82 ~~ 83 (95)
T 2cuf_A 82 NI 83 (95)
T ss_dssp HC
T ss_pred hc
Confidence 43
No 52
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=53.05 E-value=49 Score=24.00 Aligned_cols=68 Identities=18% Similarity=0.140 Sum_probs=45.6
Q ss_pred CCCCeecChHHHHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHHHHHHhhhhHHHHhhhcCCCCCCCC
Q 047187 155 KRPRLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLKRMQGLSNDDPS 223 (339)
Q Consensus 155 kKpRl~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V~GLTr~nVkSHLQKYRl~lkR~~~l~~~gps 223 (339)
+|.|...|.+-.. .++...+..-.-..+..+.+|...-|||..+|+.=.|.-|.+.||...+.....+
T Consensus 3 ~k~Rt~ft~~Q~~-~Le~~F~~~~~yp~~~~r~~LA~~~~l~~~qV~~WFqNRR~k~rk~~~~~~~~~s 70 (73)
T 2hi3_A 3 AQTVSGPTEDQVE-ILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSEGLPSECRS 70 (73)
T ss_dssp CSCCSSCCHHHHH-HHHHHHHHTTSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHTCCSSSCC
T ss_pred CCCCCCCCHHHHH-HHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhccCCCcCCC
Confidence 4567777876433 3444444311234466666777777899999999999999999888766554433
No 53
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=51.31 E-value=31 Score=25.52 Aligned_cols=47 Identities=17% Similarity=0.106 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHhCC-----------CCCChHHHHHhhCCCCCCHHHHHHHhhhhHHHHhh
Q 047187 164 QLHKRFVDVVAHLGI-----------KNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLKR 213 (339)
Q Consensus 164 ELH~rFVeAV~qLG~-----------dkAtPK~ILelM~V~GLTr~nVkSHLQKYRl~lkR 213 (339)
++...+.+|+.+|-. +.-+-+.|-+.|+ ++...|++||.+-|.+|++
T Consensus 26 ~~~~~l~~~l~~L~~~~r~vl~l~~~~g~s~~eIA~~lg---is~~tV~~~l~ra~~~Lr~ 83 (92)
T 3hug_A 26 LDRLLIADALAQLSAEHRAVIQRSYYRGWSTAQIATDLG---IAEGTVKSRLHYAVRALRL 83 (92)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHTSCCCHHHHHHHHT---SCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHcCCCHHHHHHHHC---cCHHHHHHHHHHHHHHHHH
Confidence 344455555555542 2234555555555 4677888998888888775
No 54
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=50.08 E-value=69 Score=23.58 Aligned_cols=64 Identities=19% Similarity=0.176 Sum_probs=43.2
Q ss_pred CccCCCCCCeecChHHHHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHHHHHHhhhhHHHHhhhc
Q 047187 150 SARTLKRPRLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLKRMQ 215 (339)
Q Consensus 150 ~~~~~kKpRl~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V~GLTr~nVkSHLQKYRl~lkR~~ 215 (339)
.....+|.|-..|.+--.. ++.+.+.. .......+.+|-..-|||..+|+-=.|.-|.+.||..
T Consensus 18 ~~~~~rr~Rt~ft~~Q~~~-Le~~F~~~-~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~ 81 (84)
T 2kt0_A 18 VPVKKQKTRTVFSSTQLCV-LNDRFQRQ-KYLSLQQMQELSNILNLSYKQVKTWFQNQRMKSKRWQ 81 (84)
T ss_dssp CCSCSCCCSSCCCHHHHHH-HHHHHHHS-SSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTSCC
T ss_pred CCCCCCCCCCCCCHHHHHH-HHHHHHhC-CCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 3445778888888874333 33333333 2334566667777778999999999999998877654
No 55
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=49.78 E-value=70 Score=23.34 Aligned_cols=62 Identities=21% Similarity=0.224 Sum_probs=44.1
Q ss_pred cCCCCCCeecChHHHHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHHHHHHhhhhHHHHhhhc
Q 047187 152 RTLKRPRLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLKRMQ 215 (339)
Q Consensus 152 ~~~kKpRl~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V~GLTr~nVkSHLQKYRl~lkR~~ 215 (339)
...+|.|.+.|.+--. .++.+.+.- .......+.+|...-|||..+|+.=.|.-|.+.||..
T Consensus 5 ~~~rr~Rt~ft~~Q~~-~Le~~F~~~-~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (80)
T 2dmq_A 5 SSGKRMRTSFKHHQLR-TMKSYFAIN-HNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNL 66 (80)
T ss_dssp CCCCCCCCCCCHHHHH-HHHHHHHHC-SSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHH-HHHHHHHHc-CCCCHHHHHHHHHHhCCCHHHhhHccHHHHHHHHHHH
Confidence 3567888899987433 344444433 2344667777777789999999999999898887754
No 56
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=48.69 E-value=71 Score=22.84 Aligned_cols=62 Identities=15% Similarity=0.120 Sum_probs=43.7
Q ss_pred CCCCCCeecChHHHHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHHHHHHhhhhHHHHhhhcC
Q 047187 153 TLKRPRLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLKRMQG 216 (339)
Q Consensus 153 ~~kKpRl~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V~GLTr~nVkSHLQKYRl~lkR~~~ 216 (339)
..++.|.+.|.+-... ++.+.+.- ...+...+.+|...-|||..+|+.=.|.-|.+.||...
T Consensus 6 ~~~r~R~~ft~~q~~~-Le~~F~~~-~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rr~~~ 67 (70)
T 2e1o_A 6 SGKGGQVRFSNDQTIE-LEKKFETQ-KYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRRSGP 67 (70)
T ss_dssp CCCCCCCCCCHHHHHH-HHHHHHHC-SSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHSC
T ss_pred CCCCCCCCCCHHHHHH-HHHHHHcC-CCcCHHHHHHHHHHHCCCHHHhhHhhHhhHhhcCCCCC
Confidence 4667888899864443 33333333 23446667777777889999999999999998887653
No 57
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=48.49 E-value=69 Score=23.04 Aligned_cols=68 Identities=18% Similarity=0.168 Sum_probs=44.4
Q ss_pred CCCeecChHHHHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHHHHHHhhhhHHHHhhhcCCCCCCCCC
Q 047187 156 RPRLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLKRMQGLSNDDPSS 224 (339)
Q Consensus 156 KpRl~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V~GLTr~nVkSHLQKYRl~lkR~~~l~~~gps~ 224 (339)
|.|-..|.+- ...++...+..-.-.....+.+|...-|||..+|+.=.|.-|.+.||...+.....+.
T Consensus 3 k~Rt~ft~~Q-~~~Le~~F~~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~rk~~~~~~~~~s~ 70 (72)
T 1uhs_A 3 EGAATMTEDQ-VEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSEGLPSECRSV 70 (72)
T ss_dssp CCCCCCCHHH-HHHHHHHHHSSCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCCCCCCCCS
T ss_pred CCCccCCHHH-HHHHHHHHHccCCCCCHHHHHHHHHHHCcCHHHhhHHhHHHHHHHhhhccCCCcCCCC
Confidence 4456667653 3344444443212334566667777778999999999999999998887665554443
No 58
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=48.15 E-value=38 Score=25.69 Aligned_cols=61 Identities=20% Similarity=0.245 Sum_probs=42.6
Q ss_pred cCCCCCCeecChHHHHHHHHHHHH-hC--CCCCChHHHHHhhCCCCCCHHHHHHHhhhhHHHHhh
Q 047187 152 RTLKRPRLVWTPQLHKRFVDVVAH-LG--IKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLKR 213 (339)
Q Consensus 152 ~~~kKpRl~WT~ELH~rFVeAV~q-LG--~dkAtPK~ILelM~V~GLTr~nVkSHLQKYRl~lkR 213 (339)
...+|.|-..|.+--.... ++.. || ..........+|...-+|+..+|+-=.|.-|.++++
T Consensus 15 ~~~rR~Rt~ft~~Ql~~Le-~F~~~~~w~~~yp~~~~r~~La~~lgL~e~qVkvWFqNrR~k~~~ 78 (80)
T 1wh7_A 15 GTTKRFRTKFTAEQKEKML-AFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNSGPS 78 (80)
T ss_dssp CCSSCCCCCCCHHHHHHHH-HHHHHHTSCCCSSTTHHHHHHHHHSCCCHHHHHHHHHTTSCCSCC
T ss_pred CCCCCCCccCCHHHHHHHH-HHHHHcCcCCCCCCHHHHHHHHHHhCcCcCcccccccccccCCCC
Confidence 4567788888887544444 5553 66 344456666777777799999999988887776653
No 59
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=45.29 E-value=81 Score=22.48 Aligned_cols=62 Identities=19% Similarity=0.161 Sum_probs=43.2
Q ss_pred cCCCCCCeecChHHHHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHHHHHHhhhhHHHHhhhc
Q 047187 152 RTLKRPRLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLKRMQ 215 (339)
Q Consensus 152 ~~~kKpRl~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V~GLTr~nVkSHLQKYRl~lkR~~ 215 (339)
...+|.|.+.|.+--.....++ +.- .-.+...+.+|...-|||..+|+.=.|.-|.+.||..
T Consensus 5 ~~~rr~Rt~ft~~q~~~Le~~F-~~~-~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rr~~ 66 (70)
T 2dmu_A 5 SSGRRHRTIFTDEQLEALENLF-QET-KYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRSG 66 (70)
T ss_dssp TSSCCCCCCCCHHHHHHHHHHH-HHC-SSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTS
T ss_pred CCCCCCCCCCCHHHHHHHHHHH-Hcc-CCCCHHHHHHHHHHHCCCHHHeehccccccccccccC
Confidence 3467888889987544433333 333 2334566667767778999999999999999888754
No 60
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=44.45 E-value=38 Score=26.01 Aligned_cols=61 Identities=16% Similarity=0.102 Sum_probs=39.6
Q ss_pred CCCCCCeecChHHHHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHHHHHHhhhhHHHHhhhc
Q 047187 153 TLKRPRLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLKRMQ 215 (339)
Q Consensus 153 ~~kKpRl~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V~GLTr~nVkSHLQKYRl~lkR~~ 215 (339)
..++.|.+.|.+--... +.+.+.. .-.+...+.+|...-|||..+|+.=.|.-|.+.||.+
T Consensus 24 ~~~r~Rt~ft~~Ql~~L-e~~F~~~-~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~ 84 (96)
T 3nar_A 24 GSTGKICKKTPEQLHML-KSAFVRT-QWPSPEEYDKLAKESGLARTDIVSWFGDTRYAWKNGN 84 (96)
T ss_dssp ---CCSSSSCHHHHHHH-HHHHHHC-SSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTTC
T ss_pred CCCCCCccCCHHHHHHH-HHHHHHc-CCCCHHHHHHHHHHhCCCHHHeeecchhhhhHhhhhc
Confidence 35567778887644333 3333333 2234566667777778999999999999999888743
No 61
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=42.26 E-value=54 Score=26.10 Aligned_cols=48 Identities=15% Similarity=0.158 Sum_probs=32.9
Q ss_pred hHHHHHHHHHHHHhCC-----------CCCChHHHHHhhCCCCCCHHHHHHHhhhhHHHHhh
Q 047187 163 PQLHKRFVDVVAHLGI-----------KNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLKR 213 (339)
Q Consensus 163 ~ELH~rFVeAV~qLG~-----------dkAtPK~ILelM~V~GLTr~nVkSHLQKYRl~lkR 213 (339)
.++...+.+|+.+|.. +.-+.+.|-+.|| ++...|+++|++=|.+|++
T Consensus 128 ~e~~~~l~~~l~~L~~~~r~vl~l~~~~g~s~~EIA~~lg---is~~tV~~~l~ra~~~Lr~ 186 (194)
T 1or7_A 128 EELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMD---CPVGTVRSRIFRAREAIDN 186 (194)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHTTCCCHHHHHHHTT---SCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHhHHHHHcCCCHHHHHHHHC---CCHHHHHHHHHHHHHHHHH
Confidence 3555666677777752 3344556655555 5788899999998888875
No 62
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=40.96 E-value=68 Score=23.61 Aligned_cols=62 Identities=16% Similarity=0.148 Sum_probs=41.0
Q ss_pred ccCCCCCCeecChHHHHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHHHHHHhhhhHHHHhhh
Q 047187 151 ARTLKRPRLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLKRM 214 (339)
Q Consensus 151 ~~~~kKpRl~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V~GLTr~nVkSHLQKYRl~lkR~ 214 (339)
.+..++.|...|.+-.. .++.+.... ...+...+.+|...-|||..+|+.=.|.-|.+.||.
T Consensus 15 ~~~~rr~Rt~ft~~Q~~-~Le~~F~~~-~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rk~ 76 (81)
T 1fjl_A 15 KRKQRRSRTTFSASQLD-ELERAFERT-QYPDIYTREELAQRTNLTEARIQVWFQNRRARLRKQ 76 (81)
T ss_dssp --CCCCCCCCCCHHHHH-HHHHHHHHC-SSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCCCCCHHHHH-HHHHHHHHc-CCCCHHHHHHHHHHHCcCHHHHHHHHHHHhhhhhhh
Confidence 34567788888886433 333333333 223455566666667899999999999999888764
No 63
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=40.58 E-value=75 Score=23.81 Aligned_cols=62 Identities=10% Similarity=-0.067 Sum_probs=43.8
Q ss_pred CCCCCCeecChHHHHHHHHHHHHh-CCCCCChHHHHHhhCCCCCCHHHHHHHhhhhHHHHhhh
Q 047187 153 TLKRPRLVWTPQLHKRFVDVVAHL-GIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLKRM 214 (339)
Q Consensus 153 ~~kKpRl~WT~ELH~rFVeAV~qL-G~dkAtPK~ILelM~V~GLTr~nVkSHLQKYRl~lkR~ 214 (339)
..+|+|...|.+--....+.+... --.-.+.....+|....|||..+|+.=.|..|.+.++.
T Consensus 6 ~~rk~R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~gLs~~qV~~WFqNrR~r~k~~ 68 (83)
T 2dmn_A 6 SGKKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISNWFINARRRILPD 68 (83)
T ss_dssp CCCCCCSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTHHH
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHhhHHhhhhHhhhcHH
Confidence 467778888877555544444432 11234566666777788999999999999999988764
No 64
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=39.34 E-value=44 Score=26.89 Aligned_cols=49 Identities=18% Similarity=0.388 Sum_probs=38.8
Q ss_pred CeecChHHHHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHHHHHHhhhhHH
Q 047187 158 RLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRL 209 (339)
Q Consensus 158 Rl~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V~GLTr~nVkSHLQKYRl 209 (339)
+..|-...-++.++.+..-| .++|+.|-+.+++ ++|+..|..||++-..
T Consensus 7 ~~~~md~~d~~IL~~L~~~g--~~s~~eLA~~l~~-giS~~aVs~rL~~Le~ 55 (111)
T 3b73_A 7 SGSWMTIWDDRILEIIHEEG--NGSPKELEDRDEI-RISKSSVSRRLKKLAD 55 (111)
T ss_dssp CCTTCCHHHHHHHHHHHHHS--CBCHHHHHTSTTC-CSCHHHHHHHHHHHHH
T ss_pred hhhhcCHHHHHHHHHHHHcC--CCCHHHHHHHHhc-CCCHHHHHHHHHHHHH
Confidence 45688888899999888777 6789988875532 6899999999998654
No 65
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=38.55 E-value=41 Score=25.08 Aligned_cols=44 Identities=11% Similarity=0.210 Sum_probs=34.6
Q ss_pred cChHHHHHHHHHHHHhC-CCCCChHHHHHhhCCCCCCHHHHHHHhhhh
Q 047187 161 WTPQLHKRFVDVVAHLG-IKNAVPKTIMQLMNVEGLTRENVASHLQKY 207 (339)
Q Consensus 161 WT~ELH~rFVeAV~qLG-~dkAtPK~ILelM~V~GLTr~nVkSHLQKY 207 (339)
=|+++.++.++++...| .+..+.+.|.+.+++ ++..|..||.|-
T Consensus 11 ~~~~~~~~IL~~L~~~~~~~~~t~~eLA~~Lgv---s~~tV~~~L~~L 55 (77)
T 1qgp_A 11 IYQDQEQRILKFLEELGEGKATTAHDLSGKLGT---PKKEINRVLYSL 55 (77)
T ss_dssp HHHHHHHHHHHHHHHHCSSSCEEHHHHHHHHCC---CHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHCc---CHHHHHHHHHHH
Confidence 36778888999999999 556788999999985 567787777554
No 66
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=36.95 E-value=1.1e+02 Score=21.69 Aligned_cols=62 Identities=13% Similarity=0.179 Sum_probs=42.0
Q ss_pred cCCCCCCeecChHHHHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHHHHHHhhhhHHHHhhhc
Q 047187 152 RTLKRPRLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLKRMQ 215 (339)
Q Consensus 152 ~~~kKpRl~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V~GLTr~nVkSHLQKYRl~lkR~~ 215 (339)
...++.|.+.|.+--.. ++.+.+.. ...+...+.+|...-|||..+|+.=.|.-|.+.||..
T Consensus 5 ~~~rr~Rt~ft~~q~~~-Le~~F~~~-~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2da1_A 5 SSGKRPRTRITDDQLRV-LRQYFDIN-NSPSEEQIKEMADKSGLPQKVIKHWFRNTLFKERQSG 66 (70)
T ss_dssp CCCCSCSCCCCHHHHHH-HHHHHHHC-SSCCTTHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCC
T ss_pred CCCCCCCCCCCHHHHHH-HHHHHHHC-CCCCHHHHHHHHHHhCCCHHHHHHHhhhhhHHHhhhc
Confidence 45778888999874443 34444433 1223445556666668999999999999999887754
No 67
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=35.04 E-value=1.2e+02 Score=22.23 Aligned_cols=62 Identities=11% Similarity=0.034 Sum_probs=42.5
Q ss_pred cCCCCCCeecChHHHHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHHHHHHhhhhHHHHhhhc
Q 047187 152 RTLKRPRLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLKRMQ 215 (339)
Q Consensus 152 ~~~kKpRl~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V~GLTr~nVkSHLQKYRl~lkR~~ 215 (339)
...+|.|.+.|.+-.. .++.+.+.. ....+..+.+|-..-|||..+|+-=.|.-|.+.||..
T Consensus 5 ~~~rr~Rt~ft~~Q~~-~Le~~F~~~-~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 66 (80)
T 2cue_A 5 SSGQRNRTSFTQEQIE-ALEKEFERT-HYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREE 66 (80)
T ss_dssp CSSCCCCCCSCHHHHH-HHHHHHTTC-SSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCccCHHHHH-HHHHHHhcc-CCCCHHHHHHHHHHhCCCHHHhhHHHHHHHHHHHHHh
Confidence 3567788888887433 333333333 2344566667777778999999999999888877754
No 68
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=30.99 E-value=1e+02 Score=21.95 Aligned_cols=62 Identities=16% Similarity=0.150 Sum_probs=42.4
Q ss_pred cCCCCCCeecChHHHHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHHHHHHhhhhHHHHhhhc
Q 047187 152 RTLKRPRLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLKRMQ 215 (339)
Q Consensus 152 ~~~kKpRl~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V~GLTr~nVkSHLQKYRl~lkR~~ 215 (339)
...+|+|...|.+-.. .++.+.+.- .......+.+|...-|||..+|+.=.|.-|.+.||..
T Consensus 5 ~~~rr~Rt~ft~~Q~~-~Le~~F~~~-~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2djn_A 5 SSGRKPRTIYSSFQLA-ALQRRFQKT-QYLALPERAELAASLGLTQTQVKIWFQNKRSKIKKSG 66 (70)
T ss_dssp CCCCCSSCSSCHHHHH-HHHHHHTTC-SSCCHHHHHHHHHHSSCCHHHHHHHHHHHHHTCSSSS
T ss_pred CCCCCCCCCCCHHHHH-HHHHHHcCC-CCCCHHHHHHHHHHhCCCHHHHHHHHHHHhhhhcccC
Confidence 3567888888886433 344433332 2344566667777789999999999999888877644
No 69
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=30.93 E-value=1e+02 Score=21.47 Aligned_cols=39 Identities=15% Similarity=0.207 Sum_probs=25.2
Q ss_pred HHHHHHhCCCCCChHHHHHhhCCCCCCHHHHHHHhhhhHHHHh
Q 047187 170 VDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLK 212 (339)
Q Consensus 170 VeAV~qLG~dkAtPK~ILelM~V~GLTr~nVkSHLQKYRl~lk 212 (339)
.+++..+ .+.-+-+.|-+.|++ +...|++|+.+-+.+|+
T Consensus 22 ~~vl~l~-~~g~s~~eIA~~l~i---s~~tV~~~~~r~~~kl~ 60 (79)
T 1x3u_A 22 RQVLSAV-VAGLPNKSIAYDLDI---SPRTVEVHRANVMAKMK 60 (79)
T ss_dssp HHHHHHH-TTTCCHHHHHHHTTS---CHHHHHHHHHHHHHHTT
T ss_pred HHHHHHH-HcCCCHHHHHHHHCc---CHHHHHHHHHHHHHHHc
Confidence 3344433 344567778777764 77888888877766654
No 70
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=30.55 E-value=34 Score=31.98 Aligned_cols=50 Identities=16% Similarity=0.200 Sum_probs=39.2
Q ss_pred CCeecChHHHHHHHHHHHHhCCCC--CC-hHHHHHhhCCCCCCHHHHHHHhhhhH
Q 047187 157 PRLVWTPQLHKRFVDVVAHLGIKN--AV-PKTIMQLMNVEGLTRENVASHLQKYR 208 (339)
Q Consensus 157 pRl~WT~ELH~rFVeAV~qLG~dk--At-PK~ILelM~V~GLTr~nVkSHLQKYR 208 (339)
.|-.||+|.-+..+++|+++|-.+ .. +..|-++ ++|-|-.+|+.|-.+|-
T Consensus 7 ~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~--LpGRT~nsIRnRw~~~L 59 (246)
T 1ign_A 7 NKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHY--VPNHTGNSIRHRFRVYL 59 (246)
T ss_dssp -CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTT--STTSCHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHH--cCCCCHHHHHHHHHHHH
Confidence 355899999999999999999532 33 7788776 46899999999765553
No 71
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=30.34 E-value=1.5e+02 Score=21.04 Aligned_cols=62 Identities=13% Similarity=0.072 Sum_probs=42.8
Q ss_pred cCCCCCCeecChHHHHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHHHHHHhhhhHHHHhhhc
Q 047187 152 RTLKRPRLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLKRMQ 215 (339)
Q Consensus 152 ~~~kKpRl~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V~GLTr~nVkSHLQKYRl~lkR~~ 215 (339)
...++.|.+.|.+--.. ++.+.+.. ...+...+.+|...-|||..+|+.=.|.-|.+.||..
T Consensus 5 ~~~rr~Rt~ft~~q~~~-Le~~F~~~-~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2da2_A 5 SSGRSSRTRFTDYQLRV-LQDFFDAN-AYPKDDEFEQLSNLLNLPTRVIVVWFQNARQKARKSG 66 (70)
T ss_dssp CCSCCCCCCCCHHHHHH-HHHHHHHC-SSCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHHCCCS
T ss_pred CCCCCCCCCCCHHHHHH-HHHHHHcC-CCcCHHHHHHHHHHhCCCHHHhHHhhHhhhHHHhhcc
Confidence 35677888888874443 33333333 2344566667777778999999999999999887654
No 72
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=29.00 E-value=1.6e+02 Score=20.99 Aligned_cols=62 Identities=10% Similarity=0.102 Sum_probs=43.0
Q ss_pred cCCCCCCeecChHHHHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHHHHHHhhhhHHHHhhhc
Q 047187 152 RTLKRPRLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLKRMQ 215 (339)
Q Consensus 152 ~~~kKpRl~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V~GLTr~nVkSHLQKYRl~lkR~~ 215 (339)
+..+|.|.+.|.+-.. .++.+.+.. .......+.+|...-|||..+|+.=.|.-|.+.||..
T Consensus 5 ~~~rr~Rt~ft~~Q~~-~Le~~F~~~-~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~ 66 (70)
T 2cra_A 5 SSGRKKRIPYSKGQLR-ELEREYAAN-KFITKDKRRKISAATSLSERQITIWFQNRRVKEKKSG 66 (70)
T ss_dssp CCCCCSCCCSCHHHHH-HHHHHHHHC-SSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCCCcCCHHHHH-HHHHHHHhc-CCCCHHHHHHHHHHHCCCHHHhhHhhHhHHHHhcccC
Confidence 3567788888987433 344444433 2334566667777778999999999999998877654
No 73
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=28.88 E-value=83 Score=25.62 Aligned_cols=47 Identities=15% Similarity=0.205 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHhCC-----------CCCChHHHHHhhCCCCCCHHHHHHHhhhhHHHHhh
Q 047187 164 QLHKRFVDVVAHLGI-----------KNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLKR 213 (339)
Q Consensus 164 ELH~rFVeAV~qLG~-----------dkAtPK~ILelM~V~GLTr~nVkSHLQKYRl~lkR 213 (339)
++...+.+|+.+|-. +.-+.+.|-+.|| +|...|++++.+=|.+|++
T Consensus 176 e~~~~l~~~l~~L~~~~r~vl~l~~~~g~s~~EIA~~lg---is~~~V~~~~~ra~~~Lr~ 233 (239)
T 1rp3_A 176 ELTEKVKEAVSKLPEREKLVIQLIFYEELPAKEVAKILE---TSVSRVSQLKAKALERLRE 233 (239)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHHHTSCCCHHHHHHHTT---SCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhcCCCHHHHHHHhC---CCHHHHHHHHHHHHHHHHH
Confidence 344555666655542 3345566666665 5788888888888888775
No 74
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=28.35 E-value=83 Score=25.49 Aligned_cols=45 Identities=18% Similarity=0.062 Sum_probs=29.3
Q ss_pred hHHHHHHHHHHHHhCC-----CCCChHHHHHhhCCCCCCH--HHHHHHhhhhH
Q 047187 163 PQLHKRFVDVVAHLGI-----KNAVPKTIMQLMNVEGLTR--ENVASHLQKYR 208 (339)
Q Consensus 163 ~ELH~rFVeAV~qLG~-----dkAtPK~ILelM~V~GLTr--~nVkSHLQKYR 208 (339)
-+|++.|..+ ..+|. ++-.|+.|.+.|+++.-+. ..+++|=+||=
T Consensus 42 lDLy~Ly~~V-~~~GG~~~V~~~k~W~~V~~~lg~~~~~~~~~~Lr~~Y~k~L 93 (122)
T 2eqy_A 42 LDLFQLNKLV-AEEGGFAVVCKDRKWTKIATKMGFAPGKAVGSHIRGHYERIL 93 (122)
T ss_dssp CCHHHHHHHH-HHHTCHHHHHHTTTHHHHHHHTTCCSSSHHHHHHHHHHHHTH
T ss_pred ccHHHHHHHH-HHccCHHHHcCCCcHHHHHHHhCCCCCCcHHHHHHHHHHHHh
Confidence 4789988875 55663 2346999999999975331 34555444443
No 75
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.79 E-value=47 Score=26.98 Aligned_cols=63 Identities=14% Similarity=0.100 Sum_probs=39.3
Q ss_pred cCCCCCCeecChHHHHHHHHHHHHhC--CCCCChHHHHHhhCC------------------CCCCHHHHHHHhhhhHHHH
Q 047187 152 RTLKRPRLVWTPQLHKRFVDVVAHLG--IKNAVPKTIMQLMNV------------------EGLTRENVASHLQKYRLYL 211 (339)
Q Consensus 152 ~~~kKpRl~WT~ELH~rFVeAV~qLG--~dkAtPK~ILelM~V------------------~GLTr~nVkSHLQKYRl~l 211 (339)
+..+|.|..||++--. .++....-. ++...=..|.+.+|. ..||-.+|+.=-|.-|...
T Consensus 4 ~~~Rr~Rt~ft~~ql~-~Le~~F~~~~yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~WFqNRR~k~ 82 (102)
T 2da6_A 4 GSSGRNRFKWGPASQQ-ILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEE 82 (102)
T ss_dssp CCSCCCCCCCCHHHHH-HHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCccCCHHHHH-HHHHHHcCCCCCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceeeeecchHHHH
Confidence 4578899999987543 344444334 222222334445521 2689999999999988887
Q ss_pred hhhc
Q 047187 212 KRMQ 215 (339)
Q Consensus 212 kR~~ 215 (339)
|+..
T Consensus 83 kr~~ 86 (102)
T 2da6_A 83 AFRQ 86 (102)
T ss_dssp HHHH
T ss_pred HHhh
Confidence 7653
No 76
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=26.52 E-value=82 Score=26.69 Aligned_cols=64 Identities=16% Similarity=0.060 Sum_probs=36.8
Q ss_pred ccCCCCCCeecChHHHHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHHHHHHhhhhHHHHhhhcC
Q 047187 151 ARTLKRPRLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLKRMQG 216 (339)
Q Consensus 151 ~~~~kKpRl~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V~GLTr~nVkSHLQKYRl~lkR~~~ 216 (339)
.+..+|.|.++|.+--. .++...+.- ...+...+.++-..-|||..+|+-=.|.-|.+.||...
T Consensus 96 ~~~~rr~Rt~ft~~Ql~-~LE~~F~~~-~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~ 159 (164)
T 2xsd_C 96 QGRKRKKRTSIEVGVKG-ALESHFLKC-PKPSAHEITGLADSLQLEKEVVRVWFCNRRQKEKRMTP 159 (164)
T ss_dssp ----------CCHHHHH-HHHHHHHHC-SSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTBSCC
T ss_pred cccCCCCceeccHHHHH-HHHHHHhcC-CCCCHHHHHHHHHHHCCChhhhhhhhHHhhHHHhhccC
Confidence 34567788899987433 333333333 23445666666666789999999999999999887653
No 77
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=26.27 E-value=2.4e+02 Score=22.56 Aligned_cols=42 Identities=12% Similarity=0.212 Sum_probs=37.1
Q ss_pred eecChHHHHHHHHHHHHhCCCCCChHHHHHhhCC---CCCCHHHHHHH
Q 047187 159 LVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNV---EGLTRENVASH 203 (339)
Q Consensus 159 l~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V---~GLTr~nVkSH 203 (339)
-.||.|.-+..++.+.++|+. +..|-+.... ++.|.++||+.
T Consensus 31 ~~WTkEETd~Lf~L~~~fdlR---W~vI~DRy~~~~~~~Rt~EdLK~R 75 (93)
T 3hm5_A 31 DAWTKAETDHLFDLSRRFDLR---FVVIHDRYDHQQFKKRSVEDLKER 75 (93)
T ss_dssp TTBCHHHHHHHHHHHHHTTTC---HHHHHHHSCTTTSCCCCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCC---eeeehhhhccCCCCCCCHHHHHHH
Confidence 479999999999999999987 8999998864 57999999875
No 78
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=25.98 E-value=1.9e+02 Score=20.97 Aligned_cols=62 Identities=18% Similarity=0.152 Sum_probs=42.4
Q ss_pred cCCCCCCeecChHHHHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHHHHHHhhhhHHHHhhhc
Q 047187 152 RTLKRPRLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLKRMQ 215 (339)
Q Consensus 152 ~~~kKpRl~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V~GLTr~nVkSHLQKYRl~lkR~~ 215 (339)
+..+|.|.+.|.+--.. ++.+.+.. ...+...+.+|-..-|||..+|+-=.|.-|.+.||..
T Consensus 7 ~~~rr~Rt~ft~~Q~~~-Le~~F~~~-~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kr~~ 68 (77)
T 1nk2_P 7 NKKRKRRVLFTKAQTYE-LERRFRQQ-RYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRAQ 68 (77)
T ss_dssp CCCCCCCCCCCHHHHHH-HHHHHHHC-SCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCccCCHHHHHH-HHHHHhhc-CCCCHHHHHHHHHHhCCCHHHHHHHhHHhhcchhhhh
Confidence 34677788888864433 33333333 2334566667777788999999999999998887653
No 79
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=25.41 E-value=2.2e+02 Score=21.58 Aligned_cols=66 Identities=18% Similarity=0.141 Sum_probs=45.9
Q ss_pred CccCCCCCCeecChHHHHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHHHHHHhhhhHHHHhhhcCC
Q 047187 150 SARTLKRPRLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLKRMQGL 217 (339)
Q Consensus 150 ~~~~~kKpRl~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V~GLTr~nVkSHLQKYRl~lkR~~~l 217 (339)
.....+|.|..+|.+--.....++ +.. ...+...+.+|-..-|||..+|+.=.|.-|.+.||....
T Consensus 13 ~~~~~rr~Rt~ft~~Ql~~Le~~F-~~~-~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~~ 78 (93)
T 3a01_A 13 TPPKRKKPRTSFTRIQVAELEKRF-HKQ-KYLASAERAALARGLKMTDAQVKTWFQNRRTKWRRQTAE 78 (93)
T ss_dssp CCCCCCCCCCCCCHHHHHHHHHHH-HHC-SCCCHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCCcCCCHHHHHHHHHHH-HcC-CCcCHHHHHHHHHHhCCChhhcccccHhhhhhhhhhhHH
Confidence 334577888999987444333333 333 234466677777788999999999999999988876543
No 80
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=25.07 E-value=1.9e+02 Score=20.64 Aligned_cols=63 Identities=14% Similarity=0.050 Sum_probs=41.9
Q ss_pred CCCCCCeecChHHHHHHHHHHHH-hCCCCCChHHHHHhhCCCCCCHHHHHHHhhhhHHHHhhhc
Q 047187 153 TLKRPRLVWTPQLHKRFVDVVAH-LGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLKRMQ 215 (339)
Q Consensus 153 ~~kKpRl~WT~ELH~rFVeAV~q-LG~dkAtPK~ILelM~V~GLTr~nVkSHLQKYRl~lkR~~ 215 (339)
..++.|...|.+--.....++.. +--.-.+.....+|...-|||..+|+.=.|.-|.+.++..
T Consensus 6 ~~rr~R~~~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~ 69 (73)
T 1x2n_A 6 SGKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQSG 69 (73)
T ss_dssp SSCCSSCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHCcCHHHHHHHhHHHHhhccccc
Confidence 46677788887643333333332 2222344566667777789999999999999999887643
No 81
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=24.98 E-value=74 Score=26.29 Aligned_cols=47 Identities=11% Similarity=0.295 Sum_probs=37.7
Q ss_pred HHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHH-HHHHhhhhHHHHhhhc
Q 047187 166 HKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTREN-VASHLQKYRLYLKRMQ 215 (339)
Q Consensus 166 H~rFVeAV~qLG~dkAtPK~ILelM~V~GLTr~n-VkSHLQKYRl~lkR~~ 215 (339)
-++.++++. .+..+++.|..++++++++... |-.||..-...++|..
T Consensus 13 Re~Ii~lL~---~~plta~ei~~~l~i~~~~~ke~Vy~hLeHIaksl~r~g 60 (105)
T 2gmg_A 13 REKIIELLL---EGDYSPSELARILDMRGKGSKKVILEDLKVISKIAKREG 60 (105)
T ss_dssp HHHHHHHTT---TSCBCTTHHHHSSCCCSSCCHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHH---cCCCCHHHHHHHhCCCCCChHHHHHHHHHHHHHHHhcCC
Confidence 345555553 4678999999999999998888 9999999998888743
No 82
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=23.90 E-value=1.2e+02 Score=28.91 Aligned_cols=54 Identities=20% Similarity=0.246 Sum_probs=40.8
Q ss_pred CCCCCeecChHHHHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHHHHHHhhhhHHHH
Q 047187 154 LKRPRLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYL 211 (339)
Q Consensus 154 ~kKpRl~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V~GLTr~nVkSHLQKYRl~l 211 (339)
....--.||-.--..|+.|+...|.+. -..|...| .|-|.+.|+.|.+.+-...
T Consensus 106 l~eGF~~W~rrdf~~Fi~a~~kyGr~~--~~~IA~ev--~~Kt~eEV~~Y~~vFw~ry 159 (304)
T 1ofc_X 106 LSQGFTAWTKRDFNQFIKANEKYGRDD--IDNIAKDV--EGKTPEEVIEYNAVFWERC 159 (304)
T ss_dssp TTSSCTTCCHHHHHHHHHHHHHHCTTC--HHHHTTSS--TTCCHHHHHHHHHHHHHHG
T ss_pred HHhhhcccCHHHHHHHHHHHHHhCHHH--HHHHHHHh--cCCCHHHHHHHHHHHHHhH
Confidence 333444699999999999999999653 45665555 4799999999987665544
No 83
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=22.55 E-value=1.2e+02 Score=23.08 Aligned_cols=49 Identities=8% Similarity=0.146 Sum_probs=30.2
Q ss_pred ChHHHHHHHHHHH-HhCC----------CCCChHHHHHhhCCCCCCHHHHHHHhhhhHHHHhh
Q 047187 162 TPQLHKRFVDVVA-HLGI----------KNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLKR 213 (339)
Q Consensus 162 T~ELH~rFVeAV~-qLG~----------dkAtPK~ILelM~V~GLTr~nVkSHLQKYRl~lkR 213 (339)
..+....+.+|+. +|.. +.-+-+.|-+.|| +|...|++++++-|.+|++
T Consensus 95 ~~e~~~~l~~~l~~~L~~~~r~v~~~~~~g~s~~EIA~~lg---is~~tV~~~~~ra~~~Lr~ 154 (164)
T 3mzy_A 95 LKEEIEEFKKFSENNFSKFEKEVLTYLIRGYSYREIATILS---KNLKSIDNTIQRIRKKSEE 154 (164)
T ss_dssp HHHHHHHHHHHHHHHSCHHHHHHHHHHTTTCCHHHHHHHHT---CCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHC---CCHHHHHHHHHHHHHHHHH
Confidence 3445556666666 6652 3334555555555 4677788888877777764
No 84
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=22.52 E-value=42 Score=26.61 Aligned_cols=49 Identities=16% Similarity=0.183 Sum_probs=32.4
Q ss_pred hHHHHHHHHHHHHhCCCCCChHHHHHhh-----------CCCCCCHHHHHHHhhhhHHHHhhh
Q 047187 163 PQLHKRFVDVVAHLGIKNAVPKTIMQLM-----------NVEGLTRENVASHLQKYRLYLKRM 214 (339)
Q Consensus 163 ~ELH~rFVeAV~qLG~dkAtPK~ILelM-----------~V~GLTr~nVkSHLQKYRl~lkR~ 214 (339)
.+....+.+|+.+|... =+.|+.+- ..-|++...|+++|++=|.+|++.
T Consensus 123 ~~~~~~l~~~l~~L~~~---~r~vl~l~~~~g~s~~eIA~~lgis~~tV~~~l~ra~~~Lr~~ 182 (184)
T 2q1z_A 123 QQENARLGRAIARLPEA---QRALIERAFFGDLTHRELAAETGLPLGTIKSRIRLALDRLRQH 182 (184)
T ss_dssp HHHHHHHHHHHHTSCHH---HHHHHHHHHHSCCSSCCSTTTCCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHH---HHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 34556677788777632 23343321 124678899999999999998863
No 85
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=22.35 E-value=89 Score=23.44 Aligned_cols=32 Identities=16% Similarity=0.132 Sum_probs=25.4
Q ss_pred CCCChHHHHHhhCCCCCCHHHHHHHhhhhHHHHhh
Q 047187 179 KNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLKR 213 (339)
Q Consensus 179 dkAtPK~ILelM~V~GLTr~nVkSHLQKYRl~lkR 213 (339)
+.-+-+.|-+.|++ +...|++|+.+-+.+|+.
T Consensus 41 ~g~s~~eIA~~l~i---s~~tV~~~l~r~~~kL~~ 72 (95)
T 3c57_A 41 EGLTNKQIADRMFL---AEKTVKNYVSRLLAKLGM 72 (95)
T ss_dssp TTCCHHHHHHHHTC---CHHHHHHHHHHHHHHHTC
T ss_pred cCCCHHHHHHHHCc---CHHHHHHHHHHHHHHHcC
Confidence 34458899998876 888999999988877763
No 86
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=21.17 E-value=1.4e+02 Score=21.67 Aligned_cols=31 Identities=19% Similarity=0.283 Sum_probs=24.7
Q ss_pred CCCChHHHHHhhCCCCCCHHHHHHHhhhhHHHHh
Q 047187 179 KNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLK 212 (339)
Q Consensus 179 dkAtPK~ILelM~V~GLTr~nVkSHLQKYRl~lk 212 (339)
+.-+-+.|-+.|++ +...|++|+++-+.+|+
T Consensus 35 ~g~s~~eIA~~l~i---s~~tV~~~l~r~~~kL~ 65 (82)
T 1je8_A 35 QGLPNKMIARRLDI---TESTVKVHVKHMLKKMK 65 (82)
T ss_dssp TTCCHHHHHHHHTS---CHHHHHHHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCc---CHHHHHHHHHHHHHHHc
Confidence 44568999999975 88999999987776664
No 87
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.50 E-value=2.5e+02 Score=20.39 Aligned_cols=63 Identities=10% Similarity=-0.039 Sum_probs=40.9
Q ss_pred CCCCCCeecChHHHHHHHHHHHHhCCCCCC--hHHHHHhhCCCCCCHHHHHHHhhhhHHHHhhhc
Q 047187 153 TLKRPRLVWTPQLHKRFVDVVAHLGIKNAV--PKTIMQLMNVEGLTRENVASHLQKYRLYLKRMQ 215 (339)
Q Consensus 153 ~~kKpRl~WT~ELH~rFVeAV~qLG~dkAt--PK~ILelM~V~GLTr~nVkSHLQKYRl~lkR~~ 215 (339)
..++.|-..|.+--.....+++.-+..... ...+.+|...-|||..+|+-=.|.-|.+.||..
T Consensus 7 ~~rr~Rt~ft~~Q~~~Le~~F~~~~~~~~yp~~~~r~~La~~lgL~~~qV~vWFqNrR~k~rk~~ 71 (80)
T 2da4_A 7 GALQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGNRRRKYRLMG 71 (80)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCHHHhhHhHHHHHHHHhhcc
Confidence 466777777877544433333332222233 344556666678999999999999999888764
No 88
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=20.28 E-value=1.4e+02 Score=24.72 Aligned_cols=61 Identities=15% Similarity=0.115 Sum_probs=39.0
Q ss_pred cCCCCCCeecChHHHHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHHHHHHhhhhHHHHhhh
Q 047187 152 RTLKRPRLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLKRM 214 (339)
Q Consensus 152 ~~~kKpRl~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V~GLTr~nVkSHLQKYRl~lkR~ 214 (339)
+..+|+|...|.+--.....+. ..- ...++..+.++-..-|||..+|+-=.|.-|.+.||+
T Consensus 85 ~~~rr~Rt~ft~~Q~~~Le~~F-~~~-~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 145 (146)
T 1au7_A 85 ERKRKRRTTISIAAKDALERHF-GEH-SKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKRV 145 (146)
T ss_dssp ----CCCCCCCHHHHHHHHHHH-HHC-SSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCCcCccHHHHHHHHHHH-HHc-CCCCHHHHHHHHHHhCCChhhchhhhHhhhhhhhcc
Confidence 4567788899987443333333 332 234466666666666899999999999999887764
No 89
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=20.08 E-value=2.1e+02 Score=20.98 Aligned_cols=60 Identities=17% Similarity=0.170 Sum_probs=39.5
Q ss_pred CCCCeecChHHHHHHHHHHHH--hCCCCCChHHHHHhhCCCCCCHHHHHHHhhhhHHHHhhhc
Q 047187 155 KRPRLVWTPQLHKRFVDVVAH--LGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLKRMQ 215 (339)
Q Consensus 155 kKpRl~WT~ELH~rFVeAV~q--LG~dkAtPK~ILelM~V~GLTr~nVkSHLQKYRl~lkR~~ 215 (339)
+|.|-+.|.+--. .++.... .--.-.+.....+|...-|||..+|+-=.|.-|.+.||..
T Consensus 2 rr~R~~ft~~q~~-~Le~~f~~h~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~ 63 (87)
T 1b72_B 2 RRKRRNFNKQATE-ILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNI 63 (87)
T ss_dssp -CCCCCCCHHHHH-HHHHHHHTTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCG
T ss_pred CCCCCCCCHHHHH-HHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhcc
Confidence 5677788875433 3333331 2222344556667777779999999999999999887753
Done!