Query 047188
Match_columns 271
No_of_seqs 219 out of 401
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 08:36:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047188.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047188hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3088 Secretory carrier memb 100.0 4.1E-97 9E-102 669.6 25.8 264 1-271 1-276 (313)
2 PF04144 SCAMP: SCAMP family; 100.0 2.2E-59 4.7E-64 405.8 18.4 171 95-269 1-177 (177)
3 KOG3088 Secretory carrier memb 99.7 7.9E-16 1.7E-20 140.6 17.2 190 14-209 5-215 (313)
4 PF04144 SCAMP: SCAMP family; 97.2 0.004 8.7E-08 54.2 10.4 108 100-208 2-116 (177)
5 PRK12704 phosphodiesterase; Pr 81.7 1.9 4.2E-05 43.6 4.5 18 63-80 109-126 (520)
6 PRK00106 hypothetical protein; 80.9 1.7 3.7E-05 44.2 3.8 19 62-80 123-141 (535)
7 TIGR03319 YmdA_YtgF conserved 80.9 2.2 4.7E-05 43.2 4.5 19 62-80 102-120 (514)
8 KOG3966 p53-mediated apoptosis 80.1 6.9 0.00015 36.8 7.1 25 118-144 91-115 (360)
9 PF05915 DUF872: Eukaryotic pr 80.1 11 0.00023 30.8 7.5 38 150-189 71-108 (115)
10 COG1422 Predicted membrane pro 67.7 29 0.00062 31.1 7.6 27 170-196 156-183 (201)
11 PRK10263 DNA translocase FtsK; 67.1 1.5E+02 0.0033 33.7 14.5 11 216-226 141-151 (1355)
12 KOG3859 Septins (P-loop GTPase 64.2 8.9 0.00019 36.5 3.9 17 69-85 353-369 (406)
13 PF11471 Sugarporin_N: Maltopo 63.0 17 0.00036 26.3 4.4 27 62-88 30-56 (60)
14 KOG4279 Serine/threonine prote 57.9 28 0.00061 37.3 6.6 60 27-89 1078-1138(1226)
15 PF14257 DUF4349: Domain of un 57.4 51 0.0011 29.9 7.7 11 119-129 216-226 (262)
16 KOG4721 Serine/threonine prote 57.2 8.5 0.00018 40.0 2.7 19 72-90 450-468 (904)
17 KOG2391 Vacuolar sorting prote 56.9 46 0.001 32.2 7.4 6 31-36 171-176 (365)
18 PF05884 ZYG-11_interact: Inte 54.0 2E+02 0.0044 27.3 13.1 19 159-178 140-158 (299)
19 PHA03239 envelope glycoprotein 53.6 1.1E+02 0.0023 30.6 9.6 29 120-148 24-52 (429)
20 KOG1150 Predicted molecular ch 53.2 8.3 0.00018 34.8 1.7 26 58-83 169-196 (250)
21 PF10166 DUF2368: Uncharacteri 53.0 1E+02 0.0022 25.8 8.0 14 163-176 77-90 (131)
22 PF03154 Atrophin-1: Atrophin- 50.2 15 0.00032 39.9 3.2 9 58-66 715-723 (982)
23 PF14265 DUF4355: Domain of un 49.9 24 0.00052 28.4 3.8 26 61-86 46-71 (125)
24 PF01956 DUF106: Integral memb 49.7 24 0.00051 29.9 3.9 17 58-74 44-60 (168)
25 PF15086 UPF0542: Uncharacteri 49.3 28 0.0006 26.3 3.7 17 61-77 43-59 (74)
26 PF11712 Vma12: Endoplasmic re 48.7 1.5E+02 0.0034 24.4 9.1 11 134-144 79-89 (142)
27 KOG2174 Leptin receptor gene-r 47.9 30 0.00064 28.9 4.0 75 156-235 34-108 (131)
28 KOG1691 emp24/gp25L/p24 family 47.3 50 0.0011 29.8 5.7 18 123-140 177-194 (210)
29 PF06476 DUF1090: Protein of u 46.9 26 0.00056 28.5 3.5 23 60-82 66-88 (115)
30 KOG3312 Predicted membrane pro 45.5 95 0.0021 26.8 6.8 24 121-144 85-108 (186)
31 PF12737 Mating_C: C-terminal 45.2 15 0.00033 36.3 2.3 24 63-86 394-417 (419)
32 PF13863 DUF4200: Domain of un 44.9 42 0.00092 26.7 4.5 26 61-86 18-43 (126)
33 PF05297 Herpes_LMP1: Herpesvi 44.7 7.3 0.00016 36.9 0.0 25 154-179 103-127 (381)
34 PF03154 Atrophin-1: Atrophin- 43.5 15 0.00031 39.9 2.0 14 60-73 582-597 (982)
35 PF02344 Myc-LZ: Myc leucine z 42.6 72 0.0016 20.3 4.2 25 65-89 5-29 (32)
36 PF12737 Mating_C: C-terminal 42.5 26 0.00057 34.7 3.5 25 56-80 394-418 (419)
37 KOG1996 mRNA splicing factor [ 41.1 77 0.0017 30.3 6.1 8 46-53 91-98 (378)
38 PRK11098 microcin B17 transpor 40.9 1.1E+02 0.0025 30.2 7.6 27 158-184 98-124 (409)
39 PF07047 OPA3: Optic atrophy 3 40.5 52 0.0011 27.2 4.5 24 61-84 105-128 (134)
40 KOG0065 Pleiotropic drug resis 40.2 1.1E+02 0.0024 34.8 8.0 82 116-200 1147-1245(1391)
41 PF07334 IFP_35_N: Interferon- 39.9 78 0.0017 24.1 4.9 19 65-83 8-26 (76)
42 PF06305 DUF1049: Protein of u 39.7 41 0.00088 23.9 3.3 16 65-80 49-64 (68)
43 KOG3054 Uncharacterized conser 39.6 38 0.00082 31.5 3.8 25 60-84 105-129 (299)
44 KOG2881 Predicted membrane pro 39.6 18 0.00039 33.9 1.7 23 63-85 160-182 (294)
45 PF04210 MtrG: Tetrahydrometha 38.8 1.7E+02 0.0036 22.0 6.7 57 57-143 12-68 (70)
46 COG2991 Uncharacterized protei 38.4 23 0.0005 26.7 1.8 35 193-229 4-41 (77)
47 PRK10780 periplasmic chaperone 37.9 61 0.0013 27.4 4.7 14 61-74 87-100 (165)
48 TIGR02051 MerR Hg(II)-responsi 36.9 78 0.0017 25.5 4.9 24 64-87 79-102 (124)
49 PF05988 DUF899: Bacterial pro 36.7 36 0.00079 30.7 3.2 31 56-86 9-39 (211)
50 PF11831 Myb_Cef: pre-mRNA spl 35.6 73 0.0016 28.9 5.0 18 72-89 115-132 (231)
51 PF05529 Bap31: B-cell recepto 35.4 59 0.0013 28.1 4.3 23 60-82 157-179 (192)
52 PF03938 OmpH: Outer membrane 35.0 49 0.0011 27.3 3.6 14 105-118 140-153 (158)
53 KOG3859 Septins (P-loop GTPase 34.9 59 0.0013 31.2 4.3 9 65-73 334-342 (406)
54 PF10716 NdhL: NADH dehydrogen 34.6 75 0.0016 24.4 4.1 43 155-197 21-63 (81)
55 COG4372 Uncharacterized protei 34.5 54 0.0012 32.4 4.1 16 58-73 190-205 (499)
56 PF10268 Tmemb_161AB: Predicte 34.2 2.3E+02 0.0049 28.8 8.6 30 156-185 133-162 (486)
57 PF06673 L_lactis_ph-MCP: Lact 33.8 54 0.0012 29.8 3.8 21 62-82 19-39 (347)
58 PF06936 Selenoprotein_S: Sele 33.6 80 0.0017 28.0 4.8 15 61-75 91-105 (190)
59 TIGR01299 synapt_SV2 synaptic 33.1 5.2E+02 0.011 27.5 11.5 6 8-13 47-52 (742)
60 PHA03237 envelope glycoprotein 32.9 3.8E+02 0.0083 26.7 9.8 28 121-148 17-44 (424)
61 PF12794 MscS_TM: Mechanosensi 32.7 1.7E+02 0.0036 27.9 7.2 17 68-84 259-275 (340)
62 KOG1479 Nucleoside transporter 32.6 5.1E+02 0.011 25.7 13.4 55 215-269 154-216 (406)
63 PF05178 Kri1: KRI1-like famil 32.3 64 0.0014 25.6 3.6 15 61-75 3-17 (101)
64 PRK13741 conjugal transfer ent 32.1 3.5E+02 0.0076 23.7 9.3 16 172-187 79-98 (171)
65 PF14265 DUF4355: Domain of un 32.0 90 0.002 25.0 4.6 34 57-91 49-82 (125)
66 TIGR03752 conj_TIGR03752 integ 31.8 47 0.001 33.4 3.4 33 57-89 69-101 (472)
67 COG4818 Predicted membrane pro 31.7 41 0.00089 26.8 2.3 18 169-186 69-86 (105)
68 PRK00888 ftsB cell division pr 31.3 78 0.0017 25.2 4.0 8 73-80 46-53 (105)
69 KOG3866 DNA-binding protein of 31.2 29 0.00063 33.4 1.7 28 55-82 344-371 (442)
70 KOG3866 DNA-binding protein of 30.8 54 0.0012 31.6 3.4 26 62-87 344-369 (442)
71 cd08765 Cyt_b561_CYBRD1 Verteb 30.7 48 0.001 28.4 2.8 22 237-258 86-107 (153)
72 PLN02248 cellulose synthase-li 30.7 8.3E+02 0.018 27.6 14.5 19 249-267 1071-1089(1135)
73 TIGR02047 CadR-PbrR Cd(II)/Pb( 30.4 1.3E+02 0.0029 24.3 5.3 23 66-88 84-106 (127)
74 PF08467 Luteo_P1-P2: Luteovir 30.4 44 0.00095 32.0 2.7 23 45-67 46-68 (361)
75 PF13025 DUF3886: Protein of u 29.9 82 0.0018 23.6 3.6 15 59-73 22-36 (70)
76 PLN02189 cellulose synthase 29.8 8.3E+02 0.018 27.3 15.0 19 249-267 973-991 (1040)
77 PHA03065 Hypothetical protein; 28.9 1.3E+02 0.0028 30.0 5.8 25 108-132 117-142 (438)
78 KOG0425 Ubiquitin-protein liga 28.3 99 0.0022 26.8 4.3 21 59-79 145-165 (171)
79 KOG1962 B-cell receptor-associ 27.8 81 0.0018 28.6 3.9 18 65-82 159-176 (216)
80 PF14851 FAM176: FAM176 family 27.6 1.1E+02 0.0024 26.3 4.5 21 61-82 114-134 (153)
81 PF10205 KLRAQ: Predicted coil 27.3 94 0.002 24.9 3.8 26 58-83 34-62 (102)
82 COG0393 Uncharacterized conser 26.8 1.1E+02 0.0024 24.8 4.1 29 64-92 45-74 (108)
83 PF00558 Vpu: Vpu protein; In 26.7 86 0.0019 24.1 3.3 23 245-267 10-32 (81)
84 TIGR02976 phageshock_pspB phag 26.6 1.5E+02 0.0031 22.4 4.5 29 71-100 45-73 (75)
85 PF05278 PEARLI-4: Arabidopsis 26.4 1.1E+02 0.0025 28.6 4.7 24 65-88 201-224 (269)
86 PHA02980 hypothetical protein; 26.4 3.7E+02 0.0081 23.2 7.5 16 233-249 125-140 (160)
87 PRK10263 DNA translocase FtsK; 25.8 6.8E+02 0.015 28.8 11.1 11 156-166 70-80 (1355)
88 KOG4552 Vitamin-D-receptor int 25.4 85 0.0018 28.6 3.5 13 65-77 68-80 (272)
89 KOG4721 Serine/threonine prote 25.4 82 0.0018 33.2 3.8 21 65-85 450-470 (904)
90 COG4372 Uncharacterized protei 25.3 76 0.0016 31.4 3.4 22 61-82 249-270 (499)
91 PF04521 Viral_P18: ssRNA posi 25.3 83 0.0018 26.0 3.2 16 61-76 79-94 (120)
92 COG4741 Predicted secreted end 25.2 67 0.0015 27.8 2.7 9 101-109 97-105 (175)
93 PF10779 XhlA: Haemolysin XhlA 24.9 1.2E+02 0.0027 22.1 3.8 13 65-77 7-19 (71)
94 PF13025 DUF3886: Protein of u 24.8 1.5E+02 0.0033 22.1 4.3 17 68-84 36-52 (70)
95 cd04769 HTH_MerR2 Helix-Turn-H 24.8 1.4E+02 0.0029 23.7 4.4 20 66-85 84-103 (116)
96 COG4312 Uncharacterized protei 24.8 83 0.0018 28.9 3.4 27 55-81 14-40 (247)
97 PRK10697 DNA-binding transcrip 24.7 1.5E+02 0.0033 24.3 4.6 25 63-87 80-104 (118)
98 KOG2881 Predicted membrane pro 24.5 41 0.00088 31.6 1.4 20 70-89 160-179 (294)
99 PF12537 DUF3735: Protein of u 24.3 1.2E+02 0.0026 22.3 3.7 24 63-86 47-70 (72)
100 PRK02898 cobalt transport prot 24.3 39 0.00084 27.0 1.1 29 242-270 66-94 (100)
101 PF04108 APG17: Autophagy prot 24.0 1.5E+02 0.0032 29.1 5.3 37 65-101 368-405 (412)
102 PF04201 TPD52: Tumour protein 23.9 1.3E+02 0.0028 26.1 4.3 21 65-85 37-57 (162)
103 PF14727 PHTB1_N: PTHB1 N-term 23.9 54 0.0012 32.5 2.2 26 59-84 371-396 (418)
104 PF09036 Bcr-Abl_Oligo: Bcr-Ab 23.9 1.4E+02 0.003 22.7 3.8 26 57-82 26-51 (79)
105 PF07047 OPA3: Optic atrophy 3 23.7 1.2E+02 0.0026 25.0 4.0 31 58-88 95-125 (134)
106 PF11853 DUF3373: Protein of u 23.6 47 0.001 33.6 1.7 25 59-83 29-53 (489)
107 PF07544 Med9: RNA polymerase 23.6 1.3E+02 0.0029 22.7 3.9 21 67-87 55-75 (83)
108 PF10779 XhlA: Haemolysin XhlA 23.5 1.9E+02 0.004 21.1 4.6 26 59-84 4-29 (71)
109 PRK12377 putative replication 23.5 1.3E+02 0.0029 27.4 4.6 13 82-94 54-66 (248)
110 PF04420 CHD5: CHD5-like prote 23.5 1.2E+02 0.0025 25.9 3.9 11 72-82 74-84 (161)
111 PHA02148 hypothetical protein 23.4 1.3E+02 0.0029 23.8 3.9 15 74-88 58-72 (110)
112 PF10810 DUF2545: Protein of u 23.4 1.8E+02 0.0039 22.0 4.3 10 127-136 3-12 (80)
113 PLN03140 ABC transporter G fam 23.3 7.3E+02 0.016 28.7 11.1 36 160-198 1300-1335(1470)
114 KOG3231 Predicted assembly/vac 23.1 1.4E+02 0.003 26.3 4.3 24 58-81 19-42 (208)
115 PLN02436 cellulose synthase A 23.1 1.1E+03 0.024 26.5 15.4 19 249-267 1027-1045(1094)
116 PF11712 Vma12: Endoplasmic re 23.0 1.5E+02 0.0031 24.6 4.3 44 218-261 92-138 (142)
117 PLN03181 glycosyltransferase; 23.0 64 0.0014 32.2 2.5 22 58-79 337-358 (453)
118 PF15304 AKAP2_C: A-kinase anc 22.9 69 0.0015 31.0 2.6 23 61-83 207-232 (344)
119 PF12607 DUF3772: Protein of u 22.9 1.7E+02 0.0038 20.9 4.2 26 90-123 33-58 (64)
120 COG5346 Predicted membrane pro 22.8 4.6E+02 0.0099 21.9 7.6 33 131-165 96-128 (136)
121 PRK11431 multidrug efflux syst 22.8 1.6E+02 0.0035 23.4 4.4 65 128-210 2-66 (105)
122 PF11471 Sugarporin_N: Maltopo 22.6 1E+02 0.0022 22.2 2.9 21 61-81 36-56 (60)
123 PF10828 DUF2570: Protein of u 22.5 95 0.0021 24.7 3.0 18 104-121 91-108 (110)
124 PF09278 MerR-DNA-bind: MerR, 22.5 1.4E+02 0.003 20.7 3.6 21 65-85 40-60 (65)
125 COG4064 MtrG Tetrahydromethano 22.5 3.4E+02 0.0074 20.4 6.6 23 122-144 50-72 (75)
126 PF12848 ABC_tran_2: ABC trans 22.4 1.8E+02 0.0039 21.3 4.4 22 61-82 21-42 (85)
127 KOG2890 Predicted membrane pro 22.3 81 0.0018 30.1 2.9 16 67-82 292-307 (326)
128 PF09501 Bac_small_YrzI: Proba 22.3 1.2E+02 0.0027 20.7 3.1 22 62-84 18-39 (46)
129 KOG1962 B-cell receptor-associ 22.1 1.3E+02 0.0028 27.3 4.0 25 56-80 157-181 (216)
130 PF11368 DUF3169: Protein of u 22.0 3.2E+02 0.0069 24.6 6.7 31 236-266 47-77 (248)
131 PRK12855 hypothetical protein; 22.0 1.5E+02 0.0034 23.6 4.1 28 65-92 46-74 (103)
132 PF10205 KLRAQ: Predicted coil 22.0 1E+02 0.0023 24.7 3.1 19 63-81 32-50 (102)
133 PRK12856 hypothetical protein; 21.6 1.6E+02 0.0035 23.5 4.1 28 65-92 46-74 (103)
134 PF05241 EBP: Emopamil binding 21.4 3E+02 0.0065 24.2 6.2 85 176-260 21-112 (194)
135 PF06476 DUF1090: Protein of u 21.1 1.3E+02 0.0028 24.4 3.6 17 58-74 71-87 (115)
136 PF05278 PEARLI-4: Arabidopsis 21.1 1.6E+02 0.0034 27.6 4.5 24 59-82 202-225 (269)
137 PTZ00421 coronin; Provisional 21.0 1.5E+02 0.0034 29.7 4.8 31 57-87 446-476 (493)
138 PRK00888 ftsB cell division pr 20.9 1.7E+02 0.0037 23.2 4.2 16 65-80 45-60 (105)
139 TIGR03221 muco_delta muconolac 20.9 1.1E+02 0.0024 24.0 3.0 8 48-55 7-14 (90)
140 PLN02400 cellulose synthase 20.9 1.2E+03 0.027 26.2 15.5 20 248-267 1016-1035(1085)
141 PF07795 DUF1635: Protein of u 20.8 1.5E+02 0.0032 26.9 4.1 14 62-75 24-37 (214)
142 KOG3955 Heparan sulfate 6-O-su 20.7 60 0.0013 30.8 1.7 16 72-87 342-357 (361)
143 PRK13752 putative transcriptio 20.7 1.9E+02 0.004 24.2 4.5 23 65-87 88-110 (144)
144 cd07912 Tweety_N N-terminal do 20.6 8.4E+02 0.018 24.2 10.8 30 119-148 199-228 (418)
145 TIGR02043 ZntR Zn(II)-responsi 20.5 1.6E+02 0.0035 23.9 4.1 23 65-87 85-107 (131)
146 PF14015 DUF4231: Protein of u 20.5 3.8E+02 0.0083 20.4 6.1 28 241-268 57-84 (112)
147 PTZ00436 60S ribosomal protein 20.3 1.3E+02 0.0028 28.9 3.8 13 67-79 172-184 (357)
148 KOG1690 emp24/gp25L/p24 family 20.2 1.4E+02 0.003 26.9 3.8 36 54-90 139-175 (215)
149 PRK00295 hypothetical protein; 20.2 1.8E+02 0.0039 21.3 3.9 18 61-78 30-47 (68)
150 KOG4552 Vitamin-D-receptor int 20.2 1.2E+02 0.0026 27.6 3.4 24 61-84 71-94 (272)
151 PF14851 FAM176: FAM176 family 20.2 2.6E+02 0.0056 24.0 5.3 42 221-262 6-47 (153)
152 PF04281 Tom22: Mitochondrial 20.1 1.6E+02 0.0035 24.8 4.0 20 154-173 93-112 (137)
153 PRK00967 hypothetical protein; 20.1 1.8E+02 0.004 23.1 4.2 28 65-92 46-74 (105)
No 1
>KOG3088 consensus Secretory carrier membrane protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.1e-97 Score=669.65 Aligned_cols=264 Identities=47% Similarity=0.869 Sum_probs=252.3
Q ss_pred CCCCCCCCCCCCC-CCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCcccccCCCC----CCCchHhHHHhHHHHHHHH
Q 047188 1 MNRHHDPNPFDEE-EVNPFSNGPAAP-ASRSQVPSVTSEPIGFGQKYGATVDIPLDN----MNEPKKKERELASWEADLK 74 (271)
Q Consensus 1 m~~~~d~npf~~~-~~NPF~~~~v~~-~~~s~~~p~~~~~~~~~~~~~~~~~~~~~~----~~~l~~k~~eL~~kE~EL~ 74 (271)
|+ |+|+|||+|+ ++|||+|+++.+ .++++++|++++|+++ +.++|+|+|+++ .+|+++||+||+|||+||+
T Consensus 1 ~s-~~d~NPFadp~~~NPF~dp~~~q~~~~~~~~p~~~~~~~~--~~~~tv~~P~~~~~~~a~~~~~kq~eL~~rqeEL~ 77 (313)
T KOG3088|consen 1 MS-RYDPNPFAEPELVNPFADPAVVQPASTPPLSPLPPEPAPS--DQGPTVDIPLDSPSTQAKDLAKKQAELLKKQEELR 77 (313)
T ss_pred CC-CCCCCCCCCcccCCCCCCccccCCccCCCCCCCCCCCCCC--CCCCccccCCCCCcchhhHHHHHHHHHHHHHHHHH
Confidence 66 9999999996 589999988766 6888899999999864 368999999998 7899999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCCCC------CcccceeccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 047188 75 RREKEIKRREEAIVKAGVPTDDRNWP------PFFPIIHHDISKEIPIHAQRLQYLAFASWFGIVLCLVFNVIAVIVCWI 148 (271)
Q Consensus 75 ~RE~el~~re~~~~~~g~~~~~~NwP------pf~Pi~yhdI~~eIP~~~q~~v~~~y~~wl~~~~~L~~N~i~~~~~~i 148 (271)
|||+||+|||++++++|..+++|||| |++|||||||++|||+|+||+||++||+||++++||+||+++|+++||
T Consensus 78 Rke~ELdRREr~~a~~g~~~~~nNWPPLP~~~pv~PcfyqD~s~EIPv~~Qk~vk~~yylwm~~~~tL~~Niia~la~~i 157 (313)
T KOG3088|consen 78 RKEQELDRRERALARAGIVIRENNWPPLPSFIPVFPCFYQDISNEIPVEFQKLVKRAYYLWMGLVLTLLWNIIACLAWWI 157 (313)
T ss_pred HHHHHHhHHHHHHhhccCcccccCCCCCCCCCCcccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999 578999999999999999999999999999999999999999999999
Q ss_pred cCCChhHHHHHHHHHHHhhhhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHHHHhhheeecCCccccCcchhhHHHHHH
Q 047188 149 KGGGVKIFFLATIYALLGVPMSYVLWYRPLYRAMRTDSALKFSWFFLFYLIHIGFCIFAAIAPPVVFHGKSLTGILAAID 228 (271)
Q Consensus 149 ~g~~~~~~~laiiy~i~g~P~sf~~WyrplY~A~r~dss~~f~~fF~~~~~~i~f~v~~aIG~p~~f~g~g~~G~i~ai~ 228 (271)
+|+++.+|+|||||+++|+||||+|||||||||+|+|||++|+|||++|++|++|||+++||++ |+|.||||.||+
T Consensus 158 ~g~~~~~f~Laii~fllftPcsyVcWyRPlYkAFRsDSSf~F~~FFF~y~~q~~~~v~qAvgf~----g~~~~G~i~ai~ 233 (313)
T KOG3088|consen 158 KGGGGTIFGLAIIWFLLFTPCSYVCWYRPLYKAFRTDSSFNFGAFFFTYFFQIVFCVFQAVGFP----GWGLCGWIPAID 233 (313)
T ss_pred cCCCchhhHHHHHHHHHhCCceeeEeehHHHHHhccccchhhHHHHHHHHHHHHHHHHHHHccC----CcchhhhhhHhh
Confidence 9999999999999999999999999999999999999999999999999999999999999955 999999999999
Q ss_pred HhhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 047188 229 VISDSLLAGIFYMIGFGLFVLESLLSLWVIQKIYMFFRGTSET 271 (271)
Q Consensus 229 ~~~~~~~vgI~~~i~~~~f~~~~~~~~~~l~~v~~~yR~~G~~ 271 (271)
.++.+.+|||+|+|++++||+++++++|+++|||+||||+|++
T Consensus 234 ~~~~~i~v~i~m~i~a~~Ft~~av~~i~~i~kVh~~yRgsG~s 276 (313)
T KOG3088|consen 234 VLSGNIAVGILMLIGAGLFTLEAVLSIWVLQKVHSYYRGSGAS 276 (313)
T ss_pred ccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHh
Confidence 9999999999999999999999999999999999999999974
No 2
>PF04144 SCAMP: SCAMP family; InterPro: IPR007273 In vertebrates, secretory carrier membrane proteins (SCAMPs) 1-3 constitute a family of putative membrane-trafficking proteins composed of cytoplasmic N-terminal sequences with NPF repeats, four central transmembrane regions (TMRs), and a cytoplasmic tail. SCAMPs probably function in endocytosis by recruiting EH-domain proteins to the N-terminal NPF repeats but may have additional functions mediated by their other sequences [].; GO: 0015031 protein transport, 0016021 integral to membrane
Probab=100.00 E-value=2.2e-59 Score=405.80 Aligned_cols=171 Identities=46% Similarity=0.870 Sum_probs=167.6
Q ss_pred CCCCCCCcc------cceeccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHhhh
Q 047188 95 DDRNWPPFF------PIIHHDISKEIPIHAQRLQYLAFASWFGIVLCLVFNVIAVIVCWIKGGGVKIFFLATIYALLGVP 168 (271)
Q Consensus 95 ~~~NwPpf~------Pi~yhdI~~eIP~~~q~~v~~~y~~wl~~~~~L~~N~i~~~~~~i~g~~~~~~~laiiy~i~g~P 168 (271)
|+|||||++ ||+||||++|||++.||+||++|++|+++++||+||+++|++.++.|++++++++|++|+++|+|
T Consensus 1 ~~~NwPp~~~~~~~~P~~y~di~~eIP~~~q~~v~~~y~~w~~~~~~l~~N~i~~~~~~~~~~~~~~~~lai~y~~~~~P 80 (177)
T PF04144_consen 1 RENNWPPFPKFCCIKPCFYHDISEEIPEEFQRLVKRAYYLWLFLAITLFWNFIACLALLIAGGSGSDFGLAILYLLLGTP 80 (177)
T ss_pred CCCCCCCCccccCCCCeEEeCHhHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceehHHHHHHHHHhH
Confidence 479999999 99999999999999999999999999999999999999999999988778999999999999999
Q ss_pred hhhhhhhhhhhhhhhcccchhHHHHHHHHHHHHHHhhheeecCCccccCcchhhHHHHHHHhhcCchhHHHHHHHHHHHH
Q 047188 169 MSYVLWYRPLYRAMRTDSALKFSWFFLFYLIHIGFCIFAAIAPPVVFHGKSLTGILAAIDVISDSLLAGIFYMIGFGLFV 248 (271)
Q Consensus 169 ~sf~~WyrplY~A~r~dss~~f~~fF~~~~~~i~f~v~~aIG~p~~f~g~g~~G~i~ai~~~~~~~~vgI~~~i~~~~f~ 248 (271)
+||++||||+|||+|+|||++|++||+++++|++||++++||+| ++|+||||+|++++++|..+||+++|++++|+
T Consensus 81 ~sf~~wyrplY~A~r~dss~~f~~ff~~~~~~i~f~i~~aIG~p----~~G~~G~i~ai~~~~~~~~vgi~~~I~a~~w~ 156 (177)
T PF04144_consen 81 ASFFCWYRPLYKAFRTDSSFRFMWFFFFFFVHIIFCIIMAIGIP----GWGSCGWITAIDVFSNNKAVGILMLIVAILWT 156 (177)
T ss_pred HHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHhccc----cccHHHHHHHHHHHccCchHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999 89999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCC
Q 047188 249 LESLLSLWVIQKIYMFFRGTS 269 (271)
Q Consensus 249 ~~~~~~~~~l~~v~~~yR~~G 269 (271)
+++++++|+++|||++||++|
T Consensus 157 ~~~~~~~~~l~kv~~~yR~~G 177 (177)
T PF04144_consen 157 LEAVLSFWLLKKVHRYYRGTG 177 (177)
T ss_pred HHHHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999998
No 3
>KOG3088 consensus Secretory carrier membrane protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.70 E-value=7.9e-16 Score=140.63 Aligned_cols=190 Identities=15% Similarity=0.165 Sum_probs=121.1
Q ss_pred CCCCCCCC-CCCCCCCCC-CCCCCCCCCCCCCCCCcccccCCC---CCCCchHhHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 047188 14 EVNPFSNG-PAAPASRSQ-VPSVTSEPIGFGQKYGATVDIPLD---NMNEPKKKERELASWEADLKRREKEIKRREEAIV 88 (271)
Q Consensus 14 ~~NPF~~~-~v~~~~~s~-~~p~~~~~~~~~~~~~~~~~~~~~---~~~~l~~k~~eL~~kE~EL~~RE~el~~re~~~~ 88 (271)
|.|||+|+ .++|.++.. .+|...+|.+-.-...+..+-+.. .+++.....+|+.+||+||+|||+||+|||++++
T Consensus 5 d~NPFadp~~~NPF~dp~~~q~~~~~~~~p~~~~~~~~~~~~tv~~P~~~~~~~a~~~~~kq~eL~~rqeEL~Rke~ELd 84 (313)
T KOG3088|consen 5 DPNPFAEPELVNPFADPAVVQPASTPPLSPLPPEPAPSDQGPTVDIPLDSPSTQAKDLAKKQAELLKKQEELRRKEQELD 84 (313)
T ss_pred CCCCCCCcccCCCCCCccccCCccCCCCCCCCCCCCCCCCCCccccCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 78999995 456654444 333332222211111222222111 1223334578999999999999999999999999
Q ss_pred hcCCCCCC-CCCC--Cccc------ceeccccccchhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHH--
Q 047188 89 KAGVPTDD-RNWP--PFFP------IIHHDISKEIPIHAQ-RLQYLAFASWFGIVLCLVFNVIAVIVCWIKGGGVKIF-- 156 (271)
Q Consensus 89 ~~g~~~~~-~NwP--pf~P------i~yhdI~~eIP~~~q-~~v~~~y~~wl~~~~~L~~N~i~~~~~~i~g~~~~~~-- 156 (271)
|++..... .+-+ .+|| .+.+.|.+||.+|+. ++||+.|..|.... -.+.|+++.|.+.- ..|
T Consensus 85 RREr~~a~~g~~~~~nNWPPLP~~~pv~PcfyqD~s~EIPv~~Qk~vk~~yylwm-----~~~~tL~~Niia~l-a~~i~ 158 (313)
T KOG3088|consen 85 RRERALARAGIVIRENNWPPLPSFIPVFPCFYQDISNEIPVEFQKLVKRAYYLWM-----GLVLTLLWNIIACL-AWWIK 158 (313)
T ss_pred HHHHHHhhccCcccccCCCCCCCCCCcccccccccccccCHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHH-HHHHc
Confidence 87754433 2444 5899 799999999999995 99999999995443 33444544443221 111
Q ss_pred ---HHHHHHHHHhhhhhhhhhhhhhhhhhhcc-cchhHHHHHHHHHHHHHHhhheee
Q 047188 157 ---FLATIYALLGVPMSYVLWYRPLYRAMRTD-SALKFSWFFLFYLIHIGFCIFAAI 209 (271)
Q Consensus 157 ---~laiiy~i~g~P~sf~~WyrplY~A~r~d-ss~~f~~fF~~~~~~i~f~v~~aI 209 (271)
+--+...++..-+...|.|-.+||.+.+- ++=.-+-|+.+|++.++-+++..+
T Consensus 159 g~~~~~f~Laii~fllftPcsyVcWyRPlYkAFRsDSSf~F~~FFF~y~~q~~~~v~ 215 (313)
T KOG3088|consen 159 GGGGTIFGLAIIWFLLFTPCSYVCWYRPLYKAFRTDSSFNFGAFFFTYFFQIVFCVF 215 (313)
T ss_pred CCCchhhHHHHHHHHHhCCceeeEeehHHHHHhccccchhhHHHHHHHHHHHHHHHH
Confidence 11133345556677789999999998875 666777777777666655554443
No 4
>PF04144 SCAMP: SCAMP family; InterPro: IPR007273 In vertebrates, secretory carrier membrane proteins (SCAMPs) 1-3 constitute a family of putative membrane-trafficking proteins composed of cytoplasmic N-terminal sequences with NPF repeats, four central transmembrane regions (TMRs), and a cytoplasmic tail. SCAMPs probably function in endocytosis by recruiting EH-domain proteins to the N-terminal NPF repeats but may have additional functions mediated by their other sequences [].; GO: 0015031 protein transport, 0016021 integral to membrane
Probab=97.18 E-value=0.004 Score=54.17 Aligned_cols=108 Identities=12% Similarity=0.055 Sum_probs=75.3
Q ss_pred CCccccee------ccccccchhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHhhhhhhh
Q 047188 100 PPFFPIIH------HDISKEIPIHAQ-RLQYLAFASWFGIVLCLVFNVIAVIVCWIKGGGVKIFFLATIYALLGVPMSYV 172 (271)
Q Consensus 100 Ppf~Pi~y------hdI~~eIP~~~q-~~v~~~y~~wl~~~~~L~~N~i~~~~~~i~g~~~~~~~laiiy~i~g~P~sf~ 172 (271)
+||||.++ +-+.+||.+|++ +.|++++..+....+..+.=+...+++++.--..+. +-.+...++...+...
T Consensus 2 ~~NwPp~~~~~~~~P~~y~di~~eIP~~~q~~v~~~y~~w~~~~~~l~~N~i~~~~~~~~~~~-~~~~~lai~y~~~~~P 80 (177)
T PF04144_consen 2 ENNWPPFPKFCCIKPCFYHDISEEIPEEFQRLVKRAYYLWLFLAITLFWNFIACLALLIAGGS-GSDFGLAILYLLLGTP 80 (177)
T ss_pred CCCCCCCccccCCCCeEEeCHhHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-cceehHHHHHHHHHhH
Confidence 58999999 999999999985 899999999976655432222222222222233444 4556777777788889
Q ss_pred hhhhhhhhhhhcccchhHHHHHHHHHHHHHHhhhee
Q 047188 173 LWYRPLYRAMRTDSALKFSWFFLFYLIHIGFCIFAA 208 (271)
Q Consensus 173 ~WyrplY~A~r~dss~~f~~fF~~~~~~i~f~v~~a 208 (271)
+.|.-+||...+.-...-...|..|+++..+.+...
T Consensus 81 ~sf~~wyrplY~A~r~dss~~f~~ff~~~~~~i~f~ 116 (177)
T PF04144_consen 81 ASFFCWYRPLYKAFRTDSSFRFMWFFFFFFVHIIFC 116 (177)
T ss_pred HHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHH
Confidence 999999999988755555566666666666665544
No 5
>PRK12704 phosphodiesterase; Provisional
Probab=81.75 E-value=1.9 Score=43.57 Aligned_cols=18 Identities=33% Similarity=0.614 Sum_probs=6.6
Q ss_pred HHHhHHHHHHHHHHHHHH
Q 047188 63 ERELASWEADLKRREKEI 80 (271)
Q Consensus 63 ~~eL~~kE~EL~~RE~el 80 (271)
+++|++++++|++|+++|
T Consensus 109 e~eL~~re~~Le~re~eL 126 (520)
T PRK12704 109 EEELEKKEKELEQKQQEL 126 (520)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 6
>PRK00106 hypothetical protein; Provisional
Probab=80.93 E-value=1.7 Score=44.22 Aligned_cols=19 Identities=42% Similarity=0.532 Sum_probs=7.2
Q ss_pred hHHHhHHHHHHHHHHHHHH
Q 047188 62 KERELASWEADLKRREKEI 80 (271)
Q Consensus 62 k~~eL~~kE~EL~~RE~el 80 (271)
++++|+++|++|++|++++
T Consensus 123 rE~eLe~kekeLe~reeeL 141 (535)
T PRK00106 123 KEKTLESKEQSLTDKSKHI 141 (535)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 7
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=80.89 E-value=2.2 Score=43.17 Aligned_cols=19 Identities=37% Similarity=0.566 Sum_probs=7.2
Q ss_pred hHHHhHHHHHHHHHHHHHH
Q 047188 62 KERELASWEADLKRREKEI 80 (271)
Q Consensus 62 k~~eL~~kE~EL~~RE~el 80 (271)
++++|+++|++|++|++++
T Consensus 102 re~~Le~ke~~L~~re~eL 120 (514)
T TIGR03319 102 KEENLEKKEKELSNKEKNL 120 (514)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 8
>KOG3966 consensus p53-mediated apoptosis protein EI24/PIG8 [Signal transduction mechanisms; Defense mechanisms]
Probab=80.12 E-value=6.9 Score=36.82 Aligned_cols=25 Identities=20% Similarity=0.207 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047188 118 AQRLQYLAFASWFGIVLCLVFNVIAVI 144 (271)
Q Consensus 118 ~q~~v~~~y~~wl~~~~~L~~N~i~~~ 144 (271)
+|...+..+..|+++ .|+||..--+
T Consensus 91 F~cc~wngg~~w~s~--llf~~v~ipi 115 (360)
T KOG3966|consen 91 FLCCLWNGGAMWISF--LLFWQVCIPI 115 (360)
T ss_pred HHHHHHhcchHHHHH--HHHHHHHHHH
Confidence 577888899999654 6788875443
No 9
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=80.06 E-value=11 Score=30.79 Aligned_cols=38 Identities=24% Similarity=0.164 Sum_probs=27.3
Q ss_pred CCChhHHHHHHHHHHHhhhhhhhhhhhhhhhhhhcccchh
Q 047188 150 GGGVKIFFLATIYALLGVPMSYVLWYRPLYRAMRTDSALK 189 (271)
Q Consensus 150 g~~~~~~~laiiy~i~g~P~sf~~WyrplY~A~r~dss~~ 189 (271)
++....+.+-++=+++++|+.|.+ |-+|.|.|--+...
T Consensus 71 ~~~~~~~~llilG~L~fIPG~Y~~--~i~y~a~rg~~Gys 108 (115)
T PF05915_consen 71 GDRDRGWALLILGILCFIPGFYHT--RIAYYAWRGYKGYS 108 (115)
T ss_pred CCCcccchHHHHHHHHHhccHHHH--HHHHHHHcCCCCCC
Confidence 444556777777788999999887 56777877655444
No 10
>COG1422 Predicted membrane protein [Function unknown]
Probab=67.72 E-value=29 Score=31.10 Aligned_cols=27 Identities=22% Similarity=0.412 Sum_probs=14.5
Q ss_pred hhhhhhhhhhhhhh-cccchhHHHHHHH
Q 047188 170 SYVLWYRPLYRAMR-TDSALKFSWFFLF 196 (271)
Q Consensus 170 sf~~WyrplY~A~r-~dss~~f~~fF~~ 196 (271)
.+..++-++|.-.. .+-.--.+|||++
T Consensus 156 ~~~~~~~~~~~~~~~~~~~gWi~WYfLc 183 (201)
T COG1422 156 ALPTLFHILYHTAVFGDFLGWIGWYFLC 183 (201)
T ss_pred hhHHhhhhhhhccccccchHHHHHHHHH
Confidence 34455666666555 3344445666655
No 11
>PRK10263 DNA translocase FtsK; Provisional
Probab=67.05 E-value=1.5e+02 Score=33.70 Aligned_cols=11 Identities=18% Similarity=0.268 Sum_probs=7.1
Q ss_pred cCcchhhHHHH
Q 047188 216 HGKSLTGILAA 226 (271)
Q Consensus 216 ~g~g~~G~i~a 226 (271)
.+.|..|.+.+
T Consensus 141 ~gGGIIG~lLs 151 (1355)
T PRK10263 141 ASGGVIGSLLS 151 (1355)
T ss_pred cccchHHHHHH
Confidence 45677777754
No 12
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=64.17 E-value=8.9 Score=36.51 Aligned_cols=17 Identities=41% Similarity=0.548 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 047188 69 WEADLKRREKEIKRREE 85 (271)
Q Consensus 69 kE~EL~~RE~el~~re~ 85 (271)
||+||++-|+||..+.+
T Consensus 353 kE~elke~Ekel~~kf~ 369 (406)
T KOG3859|consen 353 KEAELKEAEKELHEKFD 369 (406)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444443333
No 13
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=62.99 E-value=17 Score=26.30 Aligned_cols=27 Identities=26% Similarity=0.287 Sum_probs=18.0
Q ss_pred hHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 047188 62 KERELASWEADLKRREKEIKRREEAIV 88 (271)
Q Consensus 62 k~~eL~~kE~EL~~RE~el~~re~~~~ 88 (271)
-|+.|+..|++|++-|++++.-|+.++
T Consensus 30 iEqRLa~LE~rL~~ae~ra~~ae~~~~ 56 (60)
T PF11471_consen 30 IEQRLAALEQRLQAAEQRAQAAEARAK 56 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677777777777777766555543
No 14
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=57.95 E-value=28 Score=37.28 Aligned_cols=60 Identities=17% Similarity=0.196 Sum_probs=30.3
Q ss_pred CCCCCCCCCCCCCCCCCCCCcccccCCCCCCCchHhHHHhHHHHHHHHHHH-HHHHHHHHHHHh
Q 047188 27 SRSQVPSVTSEPIGFGQKYGATVDIPLDNMNEPKKKERELASWEADLKRRE-KEIKRREEAIVK 89 (271)
Q Consensus 27 ~~s~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~k~~eL~~kE~EL~~RE-~el~~re~~~~~ 89 (271)
++|..+++|.|+.+-. .+-.+.... ...|..+-.++|.|||+|+++.- +.|++..++++.
T Consensus 1078 s~~q~s~vp~es~~~~--~~~~vq~sr-~~~et~rlre~L~rke~E~Qal~~Ralq~~neel~~ 1138 (1226)
T KOG4279|consen 1078 SPSQQSIVPIESSSLS--ESLAVQLSR-PPSETERLREILDRKEREYQALVLRALQEENEELIH 1138 (1226)
T ss_pred CCCccCccccCCCCCc--cchhhhhcc-CchhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 5555666676764321 112222111 12255666677888888887733 234443344443
No 15
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=57.36 E-value=51 Score=29.89 Aligned_cols=11 Identities=18% Similarity=0.431 Sum_probs=5.1
Q ss_pred HHHHHHHHHHH
Q 047188 119 QRLQYLAFASW 129 (271)
Q Consensus 119 q~~v~~~y~~w 129 (271)
+++..-...+|
T Consensus 216 ~~~~~al~~~~ 226 (262)
T PF14257_consen 216 SRFRDALKNGW 226 (262)
T ss_pred hHHHHHHHHHH
Confidence 34444444455
No 16
>KOG4721 consensus Serine/threonine protein kinase, contains leucine zipper domain [Signal transduction mechanisms]
Probab=57.19 E-value=8.5 Score=40.02 Aligned_cols=19 Identities=37% Similarity=0.618 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHhc
Q 047188 72 DLKRREKEIKRREEAIVKA 90 (271)
Q Consensus 72 EL~~RE~el~~re~~~~~~ 90 (271)
+|+.||.||.+||+++.+.
T Consensus 450 qLelkEkElaerEq~l~rr 468 (904)
T KOG4721|consen 450 QLELKEKELAEREQALERR 468 (904)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 3455666666666666553
No 17
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=56.88 E-value=46 Score=32.18 Aligned_cols=6 Identities=17% Similarity=0.479 Sum_probs=2.6
Q ss_pred CCCCCC
Q 047188 31 VPSVTS 36 (271)
Q Consensus 31 ~~p~~~ 36 (271)
.+|+|+
T Consensus 171 ~~p~p~ 176 (365)
T KOG2391|consen 171 KPPLPP 176 (365)
T ss_pred CCCCCC
Confidence 444443
No 18
>PF05884 ZYG-11_interact: Interactor of ZYG-11; InterPro: IPR008574 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=53.97 E-value=2e+02 Score=27.32 Aligned_cols=19 Identities=26% Similarity=0.350 Sum_probs=10.7
Q ss_pred HHHHHHHhhhhhhhhhhhhh
Q 047188 159 ATIYALLGVPMSYVLWYRPL 178 (271)
Q Consensus 159 aiiy~i~g~P~sf~~Wyrpl 178 (271)
|++...+.+|+.... |.+.
T Consensus 140 Aaila~iviP~~~~y-~ln~ 158 (299)
T PF05884_consen 140 AAILAYIVIPLIAYY-YLNK 158 (299)
T ss_pred HHHHHHHHHHHHHHh-hccc
Confidence 445556667765544 5544
No 19
>PHA03239 envelope glycoprotein M; Provisional
Probab=53.64 E-value=1.1e+02 Score=30.59 Aligned_cols=29 Identities=10% Similarity=0.527 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 047188 120 RLQYLAFASWFGIVLCLVFNVIAVIVCWI 148 (271)
Q Consensus 120 ~~v~~~y~~wl~~~~~L~~N~i~~~~~~i 148 (271)
|.=+..+..|+..++|.++-++..+..+|
T Consensus 24 ~~D~i~~r~W~~qv~~f~l~~l~~~v~lI 52 (429)
T PHA03239 24 ELERISWRIWLTEAACFILGALLFLLAIF 52 (429)
T ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45588899999998888877777765555
No 20
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=53.25 E-value=8.3 Score=34.77 Aligned_cols=26 Identities=31% Similarity=0.536 Sum_probs=11.3
Q ss_pred CchHhHHHhHHHHHHHHH--HHHHHHHH
Q 047188 58 EPKKKERELASWEADLKR--REKEIKRR 83 (271)
Q Consensus 58 ~l~~k~~eL~~kE~EL~~--RE~el~~r 83 (271)
|+.+|-++|++++.|=++ ||+|+.+.
T Consensus 169 e~erkRk~~e~r~~~eRkr~re~eIeae 196 (250)
T KOG1150|consen 169 ELERKRKELEARANEERKRQREEEIEAE 196 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 344444444444433322 55555443
No 21
>PF10166 DUF2368: Uncharacterised conserved protein (DUF2368); InterPro: IPR019319 This family is conserved from nematodes to humans. The function is not known.
Probab=52.97 E-value=1e+02 Score=25.77 Aligned_cols=14 Identities=36% Similarity=0.667 Sum_probs=9.9
Q ss_pred HHHhhhhhhhhhhh
Q 047188 163 ALLGVPMSYVLWYR 176 (271)
Q Consensus 163 ~i~g~P~sf~~Wyr 176 (271)
++=.+|++|++-|+
T Consensus 77 l~PlvPL~fv~~Yq 90 (131)
T PF10166_consen 77 LIPLVPLTFVLGYQ 90 (131)
T ss_pred hhhHHHHHHHHHHH
Confidence 35567888888664
No 22
>PF03154 Atrophin-1: Atrophin-1 family; InterPro: IPR002951 Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA (OMIM:125370) is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins [, ]. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity [].. This entry includes Atrophin-1 and related proteins.
Probab=50.17 E-value=15 Score=39.87 Aligned_cols=9 Identities=56% Similarity=1.040 Sum_probs=4.5
Q ss_pred CchHhHHHh
Q 047188 58 EPKKKEREL 66 (271)
Q Consensus 58 ~l~~k~~eL 66 (271)
|...+|+||
T Consensus 715 ~~~~rErel 723 (982)
T PF03154_consen 715 DPAAREREL 723 (982)
T ss_pred CHHhhhhhh
Confidence 444455554
No 23
>PF14265 DUF4355: Domain of unknown function (DUF4355)
Probab=49.92 E-value=24 Score=28.39 Aligned_cols=26 Identities=38% Similarity=0.515 Sum_probs=19.3
Q ss_pred HhHHHhHHHHHHHHHHHHHHHHHHHH
Q 047188 61 KKERELASWEADLKRREKEIKRREEA 86 (271)
Q Consensus 61 ~k~~eL~~kE~EL~~RE~el~~re~~ 86 (271)
+.+.|++.++++|..+++++.+++..
T Consensus 46 k~~~e~~~~~~el~~~~~e~~~~e~~ 71 (125)
T PF14265_consen 46 KAQEELEELEKELEELEAELARRELR 71 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45577888888888888888776643
No 24
>PF01956 DUF106: Integral membrane protein DUF106; InterPro: IPR002809 This entry represents a group of eukaryotic and archaeal proteins that have no known function. Members are predicted to be integral membrane proteins.; GO: 0016020 membrane
Probab=49.73 E-value=24 Score=29.94 Aligned_cols=17 Identities=18% Similarity=0.319 Sum_probs=8.2
Q ss_pred CchHhHHHhHHHHHHHH
Q 047188 58 EPKKKERELASWEADLK 74 (271)
Q Consensus 58 ~l~~k~~eL~~kE~EL~ 74 (271)
+.++++++++++.+|++
T Consensus 44 ~~~~~~~~~~~~~~~l~ 60 (168)
T PF01956_consen 44 KYQKRMKEFQKRYRELR 60 (168)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33445555555555543
No 25
>PF15086 UPF0542: Uncharacterised protein family UPF0542
Probab=49.32 E-value=28 Score=26.31 Aligned_cols=17 Identities=18% Similarity=0.288 Sum_probs=9.7
Q ss_pred HhHHHhHHHHHHHHHHH
Q 047188 61 KKERELASWEADLKRRE 77 (271)
Q Consensus 61 ~k~~eL~~kE~EL~~RE 77 (271)
+-+++++++|+|-++++
T Consensus 43 kLaK~ie~~ere~K~k~ 59 (74)
T PF15086_consen 43 KLAKAIEKEEREKKKKA 59 (74)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44566666666555444
No 26
>PF11712 Vma12: Endoplasmic reticulum-based factor for assembly of V-ATPase; InterPro: IPR021013 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. The yeast vacuolar proton-translocating ATPase (V-ATPase) is the best characterised member of the V-ATPase family. A total of thirteen genes are required for encoding the subunits of the enzyme complex itself and an additional three for providing factors necessary for the assembly of the whole. Vma12 is one of these latter, all three of which are localised to the endoplasmic reticulum [].
Probab=48.66 E-value=1.5e+02 Score=24.42 Aligned_cols=11 Identities=36% Similarity=0.760 Sum_probs=7.7
Q ss_pred HHHHHHHHHHH
Q 047188 134 LCLVFNVIAVI 144 (271)
Q Consensus 134 ~~L~~N~i~~~ 144 (271)
+++++|++.++
T Consensus 79 ls~v~Nilvsv 89 (142)
T PF11712_consen 79 LSTVFNILVSV 89 (142)
T ss_pred HHHHHHHHHHH
Confidence 46778887664
No 27
>KOG2174 consensus Leptin receptor gene-related protein [Signal transduction mechanisms]
Probab=47.87 E-value=30 Score=28.85 Aligned_cols=75 Identities=24% Similarity=0.216 Sum_probs=48.5
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHHHHhhheeecCCccccCcchhhHHHHHHHhhcCch
Q 047188 156 FFLATIYALLGVPMSYVLWYRPLYRAMRTDSALKFSWFFLFYLIHIGFCIFAAIAPPVVFHGKSLTGILAAIDVISDSLL 235 (271)
Q Consensus 156 ~~laiiy~i~g~P~sf~~WyrplY~A~r~dss~~f~~fF~~~~~~i~f~v~~aIG~p~~f~g~g~~G~i~ai~~~~~~~~ 235 (271)
.+..+.|.+.=+|+-++-=+|--+.--+++++-.=.-.|+. .-.+..++|+|+++..-|+.||-...-.+..|.+
T Consensus 34 lf~~~~yvl~PiP~l~f~a~~~~~d~~~~~~~~idlA~FlT-----g~~vvs~falPiVl~ha~lI~~gAc~l~~tg~~i 108 (131)
T KOG2174|consen 34 LFVILFYVLSPIPNLLFIAGRTQHDFDATSDACIDLAKFLT-----GAIVVSAFALPIVLAHAGLIGWGACALVLTGNSI 108 (131)
T ss_pred HHHHHHHHhcCCchHHhccccceecccccccHHHHHHHHHh-----cchhhhhhhhHHHHHHhhHhhhhhhhhhhcCCch
Confidence 46678888888888777766665555554443222222222 3557788999999988777777766555555544
No 28
>KOG1691 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.31 E-value=50 Score=29.77 Aligned_cols=18 Identities=22% Similarity=0.233 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 047188 123 YLAFASWFGIVLCLVFNV 140 (271)
Q Consensus 123 ~~~y~~wl~~~~~L~~N~ 140 (271)
++++.+.+.+++|+.++.
T Consensus 177 rv~~fSi~Sl~v~~~va~ 194 (210)
T KOG1691|consen 177 RVAWFSILSLVVLLSVAG 194 (210)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 677777777776665543
No 29
>PF06476 DUF1090: Protein of unknown function (DUF1090); InterPro: IPR009468 This family consists of several bacterial proteins of unknown function and is known as YqjC in Escherichia coli.
Probab=46.94 E-value=26 Score=28.52 Aligned_cols=23 Identities=22% Similarity=0.458 Sum_probs=17.2
Q ss_pred hHhHHHhHHHHHHHHHHHHHHHH
Q 047188 60 KKKERELASWEADLKRREKEIKR 82 (271)
Q Consensus 60 ~~k~~eL~~kE~EL~~RE~el~~ 82 (271)
.+++++.+.+++++.+||+||+.
T Consensus 66 ~e~q~ki~~~~~kV~ere~eL~e 88 (115)
T PF06476_consen 66 AERQQKIAEKQQKVAEREAELKE 88 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 55677777788888888888765
No 30
>KOG3312 consensus Predicted membrane protein [Function unknown]
Probab=45.51 E-value=95 Score=26.83 Aligned_cols=24 Identities=13% Similarity=0.170 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 047188 121 LQYLAFASWFGIVLCLVFNVIAVI 144 (271)
Q Consensus 121 ~v~~~y~~wl~~~~~L~~N~i~~~ 144 (271)
++++--..-++++++.++.++.++
T Consensus 85 l~kmKsmfaigl~ftal~~~fNSi 108 (186)
T KOG3312|consen 85 LFKMKSMFAIGLAFTALLGMFNSI 108 (186)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445544444555555555555544
No 31
>PF12737 Mating_C: C-terminal domain of homeodomain 1; InterPro: IPR024441 Mating in fungi is controlled by the loci that determine the mating type of an individual, and only individuals with differing mating types can mate. Basidiomycete fungi have evolved a unique mating system, termed tetrapolar or bifactorial incompatibility, in which mating type is determined by two unlinked loci; compatibility at both loci is required for mating to occur. The multi-allelic tetrapolar mating system is considered to be a novel innovation that could have only evolved once, and is thus unique to the mushroom fungi. This domain is found in the C-terminal of some mating-type proteins.
Probab=45.19 E-value=15 Score=36.30 Aligned_cols=24 Identities=17% Similarity=0.173 Sum_probs=14.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHH
Q 047188 63 ERELASWEADLKRREKEIKRREEA 86 (271)
Q Consensus 63 ~~eL~~kE~EL~~RE~el~~re~~ 86 (271)
++|+++|.+||+..|++.++-|.+
T Consensus 394 ~~~~~AK~reL~eLeAq~~aL~AE 417 (419)
T PF12737_consen 394 EAEREAKRRELEELEAQARALRAE 417 (419)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445566666666666666554444
No 32
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=44.90 E-value=42 Score=26.70 Aligned_cols=26 Identities=35% Similarity=0.638 Sum_probs=11.9
Q ss_pred HhHHHhHHHHHHHHHHHHHHHHHHHH
Q 047188 61 KKERELASWEADLKRREKEIKRREEA 86 (271)
Q Consensus 61 ~k~~eL~~kE~EL~~RE~el~~re~~ 86 (271)
.+-+|.+++++.++.|+++|+.++..
T Consensus 18 ~kr~e~~~~~~~~~~~e~~L~~~e~~ 43 (126)
T PF13863_consen 18 TKREEIERREEQLKQREEELEKKEQE 43 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444433
No 33
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=44.72 E-value=7.3 Score=36.93 Aligned_cols=25 Identities=12% Similarity=0.551 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHhhhhhhhhhhhhhh
Q 047188 154 KIFFLATIYALLGVPMSYVLWYRPLY 179 (271)
Q Consensus 154 ~~~~laiiy~i~g~P~sf~~WyrplY 179 (271)
+..|+.++.+++++-++..+|++ +.
T Consensus 103 Q~LF~Gi~~l~l~~lLaL~vW~Y-m~ 127 (381)
T PF05297_consen 103 QTLFVGIVILFLCCLLALGVWFY-MW 127 (381)
T ss_dssp --------------------------
T ss_pred cHHHHHHHHHHHHHHHHHHHHHH-HH
Confidence 45788888888999999999988 44
No 34
>PF03154 Atrophin-1: Atrophin-1 family; InterPro: IPR002951 Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA (OMIM:125370) is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins [, ]. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity [].. This entry includes Atrophin-1 and related proteins.
Probab=43.53 E-value=15 Score=39.90 Aligned_cols=14 Identities=43% Similarity=0.549 Sum_probs=7.2
Q ss_pred hHhHHHh--HHHHHHH
Q 047188 60 KKKEREL--ASWEADL 73 (271)
Q Consensus 60 ~~k~~eL--~~kE~EL 73 (271)
+||++.+ .|||+|.
T Consensus 582 kKRee~~ek~RReaEq 597 (982)
T PF03154_consen 582 KKREERVEKARREAEQ 597 (982)
T ss_pred hhhHHHHHHHHhhhhc
Confidence 4444433 4566665
No 35
>PF02344 Myc-LZ: Myc leucine zipper domain; InterPro: IPR003327 This family consists of the leucine zipper dimerisation domain found in both cellular c-Myc proto-oncogenes and viral v-Myc oncogenes. Dimerisation via the leucine zipper motif with other basic helix-loop-helix-leucine zipper (b/HLH/lz) proteins is required for efficient DNA binding []. The Myc-Max dimer is a transactivating complex activating expression of growth related genes promoting cell proliferation. The dimerisation is facilitated via interdigitating leucine residues every 7th position of the alpha helix. Like charge repulsion of adjacent residues in this region preturbs the formation of homodimers with heterodimers being promoted by opposing charge attractions. It has been demonstrated that in transgenic mice the balance between oncogene-induced proliferation and apoptosis in a given tissue can be a critical determinant in the initiation and maintenance of the tumor [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1NKP_D 1A93_A 2A93_A.
Probab=42.63 E-value=72 Score=20.28 Aligned_cols=25 Identities=28% Similarity=0.472 Sum_probs=12.5
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHh
Q 047188 65 ELASWEADLKRREKEIKRREEAIVK 89 (271)
Q Consensus 65 eL~~kE~EL~~RE~el~~re~~~~~ 89 (271)
.|..-.+.|++|.++|+.|=+.+++
T Consensus 5 kL~sekeqLrrr~eqLK~kLeqlrn 29 (32)
T PF02344_consen 5 KLISEKEQLRRRREQLKHKLEQLRN 29 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3443344456666667666555543
No 36
>PF12737 Mating_C: C-terminal domain of homeodomain 1; InterPro: IPR024441 Mating in fungi is controlled by the loci that determine the mating type of an individual, and only individuals with differing mating types can mate. Basidiomycete fungi have evolved a unique mating system, termed tetrapolar or bifactorial incompatibility, in which mating type is determined by two unlinked loci; compatibility at both loci is required for mating to occur. The multi-allelic tetrapolar mating system is considered to be a novel innovation that could have only evolved once, and is thus unique to the mushroom fungi. This domain is found in the C-terminal of some mating-type proteins.
Probab=42.51 E-value=26 Score=34.68 Aligned_cols=25 Identities=32% Similarity=0.383 Sum_probs=22.2
Q ss_pred CCCchHhHHHhHHHHHHHHHHHHHH
Q 047188 56 MNEPKKKERELASWEADLKRREKEI 80 (271)
Q Consensus 56 ~~~l~~k~~eL~~kE~EL~~RE~el 80 (271)
.+++.+|++||+..|++.++.|+||
T Consensus 394 ~~~~~AK~reL~eLeAq~~aL~AEL 418 (419)
T PF12737_consen 394 EAEREAKRRELEELEAQARALRAEL 418 (419)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3577899999999999999999997
No 37
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=41.13 E-value=77 Score=30.32 Aligned_cols=8 Identities=25% Similarity=0.136 Sum_probs=3.4
Q ss_pred CcccccCC
Q 047188 46 GATVDIPL 53 (271)
Q Consensus 46 ~~~~~~~~ 53 (271)
.+|+.+++
T Consensus 91 a~~~~~~v 98 (378)
T KOG1996|consen 91 AATDEEHV 98 (378)
T ss_pred ccccccch
Confidence 34444443
No 38
>PRK11098 microcin B17 transporter; Reviewed
Probab=40.92 E-value=1.1e+02 Score=30.16 Aligned_cols=27 Identities=26% Similarity=0.646 Sum_probs=21.5
Q ss_pred HHHHHHHHhhhhhhhhhhhhhhhhhhc
Q 047188 158 LATIYALLGVPMSYVLWYRPLYRAMRT 184 (271)
Q Consensus 158 laiiy~i~g~P~sf~~WyrplY~A~r~ 184 (271)
+.+.+...++-...--|+++.|+|+.+
T Consensus 98 l~l~l~~v~l~V~~n~w~~~FydaLq~ 124 (409)
T PRK11098 98 IFVTWFLVQVSVAVNAWYAPFYDLIQT 124 (409)
T ss_pred HHHHHHHHHhhhhhhhhhHHHHHHHHH
Confidence 344555677778888999999999986
No 39
>PF07047 OPA3: Optic atrophy 3 protein (OPA3); InterPro: IPR010754 OPA3 deficiency causes type III 3-methylglutaconic aciduria (MGA) in humans. This disease manifests with early bilateral optic atrophy, spasticity, extrapyramidal dysfunction, ataxia, and cognitive deficits, but normal longevity []. This family consists of several optic atrophy 3 (OPA3) proteins and related proteins from other eukaryotic species, the function is unknown.
Probab=40.52 E-value=52 Score=27.24 Aligned_cols=24 Identities=33% Similarity=0.455 Sum_probs=11.3
Q ss_pred HhHHHhHHHHHHHHHHHHHHHHHH
Q 047188 61 KKERELASWEADLKRREKEIKRRE 84 (271)
Q Consensus 61 ~k~~eL~~kE~EL~~RE~el~~re 84 (271)
+|+++++.+.++|+++.++|+.+.
T Consensus 105 ~Ke~~~~~~l~~L~~~i~~L~~~~ 128 (134)
T PF07047_consen 105 KKEEELQERLEELEERIEELEEQV 128 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444455555444444433
No 40
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=40.22 E-value=1.1e+02 Score=34.84 Aligned_cols=82 Identities=27% Similarity=0.311 Sum_probs=41.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hc----------C-CChhHHHHH-----HHHHHHhhhhhhhhhhhhh
Q 047188 116 IHAQRLQYLAFASWFGIVLCLVFNVIAVIVCW-IK----------G-GGVKIFFLA-----TIYALLGVPMSYVLWYRPL 178 (271)
Q Consensus 116 ~~~q~~v~~~y~~wl~~~~~L~~N~i~~~~~~-i~----------g-~~~~~~~la-----iiy~i~g~P~sf~~Wyrpl 178 (271)
...|.++..++..++..++....|.-...-+. +. + -+...+++| +-|-++..-+.|++||.|+
T Consensus 1147 ~~~q~lqn~m~a~yma~v~~~~~~~~~~~~~v~~e~~y~~RE~~s~mYs~~~~~~aq~~vEiP~~l~~stl~~~~~Y~~i 1226 (1391)
T KOG0065|consen 1147 HNVQGLQNAMGAAYMATVFSGPNNNQLQQPAVATERLYEYRERASNMYSWTPFALAQVLVEIPYNLLQSTLFFLITYYPI 1226 (1391)
T ss_pred CcHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhhhhhheeeecccCcccHHHHHHHHHHHHHHHHHHHHHHhheeeeeec
Confidence 45688889999988766554333322221111 10 0 112223333 4455666667788888873
Q ss_pred hhhhhcccchhHHHHHHHHHHH
Q 047188 179 YRAMRTDSALKFSWFFLFYLIH 200 (271)
Q Consensus 179 Y~A~r~dss~~f~~fF~~~~~~ 200 (271)
.+. .++.+++||++++++.
T Consensus 1227 --GF~-~~a~~~~~f~~~~~~f 1245 (1391)
T KOG0065|consen 1227 --GFY-WTASKFFWFLLFMFIF 1245 (1391)
T ss_pred --cch-hhHHHHHHHHHHHHHH
Confidence 111 2334445555554333
No 41
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=39.86 E-value=78 Score=24.09 Aligned_cols=19 Identities=21% Similarity=0.417 Sum_probs=10.9
Q ss_pred HhHHHHHHHHHHHHHHHHH
Q 047188 65 ELASWEADLKRREKEIKRR 83 (271)
Q Consensus 65 eL~~kE~EL~~RE~el~~r 83 (271)
|-.+.++||++.|+||++.
T Consensus 8 En~~Lk~eiqkle~ELq~~ 26 (76)
T PF07334_consen 8 ENARLKEEIQKLEAELQQN 26 (76)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344556666666666553
No 42
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=39.66 E-value=41 Score=23.85 Aligned_cols=16 Identities=31% Similarity=0.528 Sum_probs=7.2
Q ss_pred HhHHHHHHHHHHHHHH
Q 047188 65 ELASWEADLKRREKEI 80 (271)
Q Consensus 65 eL~~kE~EL~~RE~el 80 (271)
++++.++|+++.|+|+
T Consensus 49 ~~~~~~k~l~~le~e~ 64 (68)
T PF06305_consen 49 RIRRLRKELKKLEKEL 64 (68)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444444444444443
No 43
>KOG3054 consensus Uncharacterized conserved protein [Function unknown]
Probab=39.62 E-value=38 Score=31.47 Aligned_cols=25 Identities=40% Similarity=0.439 Sum_probs=13.0
Q ss_pred hHhHHHhHHHHHHHHHHHHHHHHHH
Q 047188 60 KKKERELASWEADLKRREKEIKRRE 84 (271)
Q Consensus 60 ~~k~~eL~~kE~EL~~RE~el~~re 84 (271)
++|.+.|++||+.-..||+|...||
T Consensus 105 kkK~aKleakqerr~qRe~E~~eRE 129 (299)
T KOG3054|consen 105 KKKEAKLEAKQERRAQREAEEAERE 129 (299)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555544555544443
No 44
>KOG2881 consensus Predicted membrane protein [Function unknown]
Probab=39.61 E-value=18 Score=33.88 Aligned_cols=23 Identities=48% Similarity=0.692 Sum_probs=18.2
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHH
Q 047188 63 ERELASWEADLKRREKEIKRREE 85 (271)
Q Consensus 63 ~~eL~~kE~EL~~RE~el~~re~ 85 (271)
|||+++-|+||++||.|+++.++
T Consensus 160 ~eE~eEVe~el~~~~~~~~~~~~ 182 (294)
T KOG2881|consen 160 QEELEEVEAELAKREDELDRLEE 182 (294)
T ss_pred hhhHHHHHHHHHhccchhhhhhh
Confidence 67888888888888888777543
No 45
>PF04210 MtrG: Tetrahydromethanopterin S-methyltransferase, subunit G ; InterPro: IPR005866 This model describes the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive a sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of a methyl group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane
Probab=38.76 E-value=1.7e+02 Score=21.96 Aligned_cols=57 Identities=16% Similarity=0.308 Sum_probs=35.1
Q ss_pred CCchHhHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCcccceeccccccchhhHHHHHHHHHHHHHHHHHHH
Q 047188 57 NEPKKKERELASWEADLKRREKEIKRREEAIVKAGVPTDDRNWPPFFPIIHHDISKEIPIHAQRLQYLAFASWFGIVLCL 136 (271)
Q Consensus 57 ~~l~~k~~eL~~kE~EL~~RE~el~~re~~~~~~g~~~~~~NwPpf~Pi~yhdI~~eIP~~~q~~v~~~y~~wl~~~~~L 136 (271)
+|.++-++.|++-|+.++--..|+.+|. | +..=|=+-++|..-+++.+.+
T Consensus 12 ~~~~~i~~rLd~iEeKvEf~~~Ei~Qr~------G------------------------kkiGRDiGIlYG~v~Glii~~ 61 (70)
T PF04210_consen 12 DDFNEIMKRLDEIEEKVEFTNAEIAQRA------G------------------------KKIGRDIGILYGLVIGLIIFI 61 (70)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHH------h------------------------HHhhhHHHHHHHHHHHHHHHH
Confidence 3566666677777777776677776553 1 111133467788877777766
Q ss_pred HHHHHHH
Q 047188 137 VFNVIAV 143 (271)
Q Consensus 137 ~~N~i~~ 143 (271)
++..+.+
T Consensus 62 ~~~~l~~ 68 (70)
T PF04210_consen 62 IYIVLSS 68 (70)
T ss_pred HHHHHHH
Confidence 6665544
No 46
>COG2991 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=38.41 E-value=23 Score=26.75 Aligned_cols=35 Identities=26% Similarity=0.281 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHhhheeecCCccccC---cchhhHHHHHHH
Q 047188 193 FFLFYLIHIGFCIFAAIAPPVVFHG---KSLTGILAAIDV 229 (271)
Q Consensus 193 fF~~~~~~i~f~v~~aIG~p~~f~g---~g~~G~i~ai~~ 229 (271)
|++.|.+.+++-+-|+||.- ++. .|+||=|.++.+
T Consensus 4 ~lltFg~Fllvi~gMsiG~I--~krk~I~GSCGGi~alGi 41 (77)
T COG2991 4 FLLTFGIFLLVIAGMSIGYI--FKRKSIKGSCGGIAALGI 41 (77)
T ss_pred HHHHHHHHHHHHHHHhHhhh--eeccccccccccHHhhcc
Confidence 56667777777788888853 444 688998888653
No 47
>PRK10780 periplasmic chaperone; Provisional
Probab=37.95 E-value=61 Score=27.45 Aligned_cols=14 Identities=14% Similarity=0.285 Sum_probs=6.5
Q ss_pred HhHHHhHHHHHHHH
Q 047188 61 KKERELASWEADLK 74 (271)
Q Consensus 61 ~k~~eL~~kE~EL~ 74 (271)
++++||.+++++++
T Consensus 87 ~~~~el~~~~~~~q 100 (165)
T PRK10780 87 KLEKDVMAQRQTFS 100 (165)
T ss_pred HHHHHHHHHHHHHH
Confidence 34445544444443
No 48
>TIGR02051 MerR Hg(II)-responsive transcriptional regulator. This model represents the mercury (II) responsive transcriptional activator of the mer organomercurial resistance operon. This protein is a member of the MerR family of transcriptional activators (pfam00376) and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-X(8)-Cys-Pro, as well as a conserved and critical cysteine at the N-terminal end of the dimerization helix.
Probab=36.92 E-value=78 Score=25.52 Aligned_cols=24 Identities=8% Similarity=0.077 Sum_probs=11.5
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHH
Q 047188 64 RELASWEADLKRREKEIKRREEAI 87 (271)
Q Consensus 64 ~eL~~kE~EL~~RE~el~~re~~~ 87 (271)
+-|+++.++++++-++|++.++.+
T Consensus 79 ~~l~~~~~~l~~~i~~L~~~~~~L 102 (124)
T TIGR02051 79 ELASRKLKSVQAKMADLLRIERLL 102 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555444433
No 49
>PF05988 DUF899: Bacterial protein of unknown function (DUF899); InterPro: IPR010296 This family consists of uncharacterised bacterial proteins of unknown function which are thioredoxin-like.
Probab=36.74 E-value=36 Score=30.69 Aligned_cols=31 Identities=16% Similarity=0.160 Sum_probs=18.5
Q ss_pred CCCchHhHHHhHHHHHHHHHHHHHHHHHHHH
Q 047188 56 MNEPKKKERELASWEADLKRREKEIKRREEA 86 (271)
Q Consensus 56 ~~~l~~k~~eL~~kE~EL~~RE~el~~re~~ 86 (271)
.++-.+.-++|.+||+||.|.-++|..+.++
T Consensus 9 ~eew~~Ar~~LL~~EKeltR~~dalaa~RR~ 39 (211)
T PF05988_consen 9 REEWLAARDALLAREKELTRARDALAAERRR 39 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3454555567777888887655556544333
No 50
>PF11831 Myb_Cef: pre-mRNA splicing factor component; InterPro: IPR021786 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is typically between 73 to 279 amino acids in length.
Probab=35.61 E-value=73 Score=28.86 Aligned_cols=18 Identities=33% Similarity=0.575 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 047188 72 DLKRREKEIKRREEAIVK 89 (271)
Q Consensus 72 EL~~RE~el~~re~~~~~ 89 (271)
+.++++++++||.+.+++
T Consensus 115 ~~~~e~~e~~rRSqvvQR 132 (231)
T PF11831_consen 115 REEEEEKELKRRSQVVQR 132 (231)
T ss_pred HHHHHHHHHHHhhHHHHc
Confidence 334567778888877754
No 51
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=35.40 E-value=59 Score=28.10 Aligned_cols=23 Identities=35% Similarity=0.578 Sum_probs=12.6
Q ss_pred hHhHHHhHHHHHHHHHHHHHHHH
Q 047188 60 KKKERELASWEADLKRREKEIKR 82 (271)
Q Consensus 60 ~~k~~eL~~kE~EL~~RE~el~~ 82 (271)
++.++|+++.++||++.|+|+..
T Consensus 157 ~~~~~ei~~lk~el~~~~~~~~~ 179 (192)
T PF05529_consen 157 KKLSEEIEKLKKELEKKEKEIEA 179 (192)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666655555443
No 52
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=34.97 E-value=49 Score=27.28 Aligned_cols=14 Identities=14% Similarity=0.181 Sum_probs=8.4
Q ss_pred ceeccccccchhhH
Q 047188 105 IIHHDISKEIPIHA 118 (271)
Q Consensus 105 i~yhdI~~eIP~~~ 118 (271)
++|+|=..||-.+.
T Consensus 140 vly~~~~~DIT~~V 153 (158)
T PF03938_consen 140 VLYADPAYDITDEV 153 (158)
T ss_dssp EEEE-TTSE-HHHH
T ss_pred eEeeCCCCChHHHH
Confidence 78887777776554
No 53
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=34.94 E-value=59 Score=31.17 Aligned_cols=9 Identities=33% Similarity=0.475 Sum_probs=5.3
Q ss_pred HhHHHHHHH
Q 047188 65 ELASWEADL 73 (271)
Q Consensus 65 eL~~kE~EL 73 (271)
||++||+|+
T Consensus 334 e~qrkEee~ 342 (406)
T KOG3859|consen 334 ELQRKEEEM 342 (406)
T ss_pred HHHHhHHHH
Confidence 555666555
No 54
>PF10716 NdhL: NADH dehydrogenase transmembrane subunit; InterPro: IPR019654 NAD(P)H-quinone oxidoreductase subunit L (NdhL) is a component of the NDH-1L complex that is one of the proton-pumping NADH:ubiquinone oxidoreductases that catalyse the electron transfer from NADH to ubiquinone linked with proton translocation across the membrane. NDH-1L is essential for photoheterotrophic cell growth. NdhL appears to contain two transmembrane helices and it is necessary for the functioning of though not the correct assembly of the NDH-1 complex in Synechocystis 6803. The conservation between cyanobacteria and green plants suggests that chloroplast NDH-1 complexes contain related subunits []. ; GO: 0016655 oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor, 0055114 oxidation-reduction process
Probab=34.61 E-value=75 Score=24.43 Aligned_cols=43 Identities=21% Similarity=0.328 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhhhhhhhcccchhHHHHHHHH
Q 047188 155 IFFLATIYALLGVPMSYVLWYRPLYRAMRTDSALKFSWFFLFY 197 (271)
Q Consensus 155 ~~~laiiy~i~g~P~sf~~WyrplY~A~r~dss~~f~~fF~~~ 197 (271)
-.+++.+|++...++-|.-==.++|++-+-|+-+.|+.-|++|
T Consensus 21 y~~l~~~YLlVvP~~l~~wm~~RWy~~~~~Er~~~y~lvF~FF 63 (81)
T PF10716_consen 21 YAALAGLYLLVVPLILYFWMNKRWYVMSSFERLFMYFLVFLFF 63 (81)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577889966655555444456789888777766655544443
No 55
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=34.53 E-value=54 Score=32.44 Aligned_cols=16 Identities=13% Similarity=0.215 Sum_probs=7.5
Q ss_pred CchHhHHHhHHHHHHH
Q 047188 58 EPKKKERELASWEADL 73 (271)
Q Consensus 58 ~l~~k~~eL~~kE~EL 73 (271)
||+++++..+..+++|
T Consensus 190 ~L~~r~~~ieQ~~~~l 205 (499)
T COG4372 190 DLKLRSAQIEQEAQNL 205 (499)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444444444444444
No 56
>PF10268 Tmemb_161AB: Predicted transmembrane protein 161AB; InterPro: IPR019395 This entry represents a family of conserved eukaryotic proteins. Members are putative transmembrane proteins but otherwise the function is not known.
Probab=34.16 E-value=2.3e+02 Score=28.78 Aligned_cols=30 Identities=13% Similarity=0.253 Sum_probs=18.5
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhhhhhhcc
Q 047188 156 FFLATIYALLGVPMSYVLWYRPLYRAMRTD 185 (271)
Q Consensus 156 ~~laiiy~i~g~P~sf~~WyrplY~A~r~d 185 (271)
+=++++|+++.+-.+.-+++.-.=.-++++
T Consensus 133 ~Nisv~w~lL~v~F~lk~L~sLt~~yf~s~ 162 (486)
T PF10268_consen 133 FNISVVWCLLVVFFALKVLFSLTRLYFSSE 162 (486)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 345566776666666677666555556654
No 57
>PF06673 L_lactis_ph-MCP: Lactococcus lactis bacteriophage major capsid protein; InterPro: IPR009559 This family consists of several Lactococcus lactis bacteriophage major capsid proteins.
Probab=33.75 E-value=54 Score=29.80 Aligned_cols=21 Identities=33% Similarity=0.537 Sum_probs=14.4
Q ss_pred hHHHhHHHHHHHHHHHHHHHH
Q 047188 62 KERELASWEADLKRREKEIKR 82 (271)
Q Consensus 62 k~~eL~~kE~EL~~RE~el~~ 82 (271)
|-+||++|-+||++..+||++
T Consensus 19 kvreleakveelnkereelkk 39 (347)
T PF06673_consen 19 KVRELEAKVEELNKEREELKK 39 (347)
T ss_pred chHHHHHHHHHHHHHHHHHHH
Confidence 556888888888765555643
No 58
>PF06936 Selenoprotein_S: Selenoprotein S (SelS); InterPro: IPR009703 This family consists of several mammalian selenoprotein S (SelS) sequences. SelS is a plasma membrane protein and is present in a variety of tissues and cell types. These proteins are involved in the degradation process of misfolded endoplasmic reticulum (ER) luminal proteins which participate in the transfer of misfolded proteins from the ER to the cytosol, where they are destroyed by the proteasome in a ubiquitin-dependent manner []. They probably serve as a linker between DER1, which mediates the retro-translocation of misfolded proteins into the cytosol, and the ATPase complex VCP, which mediates the translocation and ubiquitination.; GO: 0008430 selenium binding, 0006886 intracellular protein transport, 0030176 integral to endoplasmic reticulum membrane; PDB: 2Q2F_A.
Probab=33.65 E-value=80 Score=27.96 Aligned_cols=15 Identities=20% Similarity=0.326 Sum_probs=7.7
Q ss_pred HhHHHhHHHHHHHHH
Q 047188 61 KKERELASWEADLKR 75 (271)
Q Consensus 61 ~k~~eL~~kE~EL~~ 75 (271)
+.|+|++++.++.++
T Consensus 91 RmQEE~dakA~~~kE 105 (190)
T PF06936_consen 91 RMQEELDAKAEEYKE 105 (190)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 445566655554433
No 59
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=33.12 E-value=5.2e+02 Score=27.48 Aligned_cols=6 Identities=33% Similarity=0.888 Sum_probs=2.8
Q ss_pred CCCCCC
Q 047188 8 NPFDEE 13 (271)
Q Consensus 8 npf~~~ 13 (271)
+-|.||
T Consensus 47 ~~~~~~ 52 (742)
T TIGR01299 47 SRFEDE 52 (742)
T ss_pred hhhccc
Confidence 345544
No 60
>PHA03237 envelope glycoprotein M; Provisional
Probab=32.90 E-value=3.8e+02 Score=26.75 Aligned_cols=28 Identities=21% Similarity=0.689 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 047188 121 LQYLAFASWFGIVLCLVFNVIAVIVCWI 148 (271)
Q Consensus 121 ~v~~~y~~wl~~~~~L~~N~i~~~~~~i 148 (271)
.=+..+.+|+..++|.++-++..+..+|
T Consensus 17 ~D~i~~r~W~~qv~~f~l~~l~~~v~lI 44 (424)
T PHA03237 17 IDYIHWRLWLVQVACFALAVLVLFITLI 44 (424)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4477888999888888777776665555
No 61
>PF12794 MscS_TM: Mechanosensitive ion channel inner membrane domain 1
Probab=32.68 E-value=1.7e+02 Score=27.90 Aligned_cols=17 Identities=24% Similarity=0.546 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 047188 68 SWEADLKRREKEIKRRE 84 (271)
Q Consensus 68 ~kE~EL~~RE~el~~re 84 (271)
+.|+-++|||+...+||
T Consensus 259 A~~Ra~~kR~~~~aqr~ 275 (340)
T PF12794_consen 259 AYERAKEKRAEALAQRE 275 (340)
T ss_pred HHHHHHHHHHHHHHhhh
Confidence 45666666766665555
No 62
>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]
Probab=32.62 E-value=5.1e+02 Score=25.71 Aligned_cols=55 Identities=24% Similarity=0.434 Sum_probs=34.9
Q ss_pred ccCcchhhHHHHHHHh------hcCchhHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhhcCC
Q 047188 215 FHGKSLTGILAAIDVI------SDSLLAGIFYMIGFGLFVLESLLSLWVI--QKIYMFFRGTS 269 (271)
Q Consensus 215 f~g~g~~G~i~ai~~~------~~~~~vgI~~~i~~~~f~~~~~~~~~~l--~~v~~~yR~~G 269 (271)
..|.+.||.+++...+ ++..-.+.++++.+.+..+.++++-+++ +++++|||.++
T Consensus 154 m~G~a~aG~l~Sl~~i~tka~~~~~~~sA~~yF~~s~~~~llC~i~y~~l~~lpf~~yy~~~~ 216 (406)
T KOG1479|consen 154 MSGQALAGTLTSLLRILTKAAFSDSRTSALIYFITSTVILLLCFVLYLVLPKLPFVRYYREKA 216 (406)
T ss_pred HhcchhHhHHHHHHHHHHHHhcCCCCceeehhHHHHHHHHHHHHHHHHHhhcchHHHHHhhhc
Confidence 3478899999886542 3333445666666666655555544444 45899998754
No 63
>PF05178 Kri1: KRI1-like family; InterPro: IPR018034 The Kri1 protein is also known as KRR1-interacting protein 1. The Saccharomyces cerevisiae member of this family is found to be required for the assembly of preribosomal 40S subunits in the nucleolus []. KRR1 is highly expressed in dividing cells and its expression ceases almost completely when cells enter the stationary phase.
Probab=32.33 E-value=64 Score=25.63 Aligned_cols=15 Identities=47% Similarity=0.581 Sum_probs=10.2
Q ss_pred HhHHHhHHHHHHHHH
Q 047188 61 KKERELASWEADLKR 75 (271)
Q Consensus 61 ~k~~eL~~kE~EL~~ 75 (271)
+|++|-++|++||+|
T Consensus 3 RK~~Ek~~k~eElkr 17 (101)
T PF05178_consen 3 RKEEEKQEKEEELKR 17 (101)
T ss_pred HHHHHHHHHHHHHHH
Confidence 456666677777765
No 64
>PRK13741 conjugal transfer entry exclusion protein TraS; Provisional
Probab=32.13 E-value=3.5e+02 Score=23.70 Aligned_cols=16 Identities=31% Similarity=0.378 Sum_probs=9.8
Q ss_pred hhhhhhhhhh----hhcccc
Q 047188 172 VLWYRPLYRA----MRTDSA 187 (271)
Q Consensus 172 ~~WyrplY~A----~r~dss 187 (271)
+.-.|-+|-+ +|++|.
T Consensus 79 i~n~R~lYLSiP~~fRk~S~ 98 (171)
T PRK13741 79 ITNGRMLYLSIPDEFRKESK 98 (171)
T ss_pred HHHHHHHHhcCcHHHHhhhH
Confidence 4456777755 566665
No 65
>PF14265 DUF4355: Domain of unknown function (DUF4355)
Probab=31.98 E-value=90 Score=24.96 Aligned_cols=34 Identities=32% Similarity=0.517 Sum_probs=22.1
Q ss_pred CCchHhHHHhHHHHHHHHHHHHHHHHHHHHHHhcC
Q 047188 57 NEPKKKERELASWEADLKRREKEIKRREEAIVKAG 91 (271)
Q Consensus 57 ~~l~~k~~eL~~kE~EL~~RE~el~~re~~~~~~g 91 (271)
.++.+++++|+.+++++.+++.....++ .+...|
T Consensus 49 ~e~~~~~~el~~~~~e~~~~e~~~~~~~-~l~e~G 82 (125)
T PF14265_consen 49 EELEELEKELEELEAELARRELRSEAKK-VLAEKG 82 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHcC
Confidence 3567777888888888887776655443 334444
No 66
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=31.79 E-value=47 Score=33.42 Aligned_cols=33 Identities=27% Similarity=0.409 Sum_probs=0.0
Q ss_pred CCchHhHHHhHHHHHHHHHHHHHHHHHHHHHHh
Q 047188 57 NEPKKKERELASWEADLKRREKEIKRREEAIVK 89 (271)
Q Consensus 57 ~~l~~k~~eL~~kE~EL~~RE~el~~re~~~~~ 89 (271)
++++++.++|.+.-+.|+++.++|++||+++..
T Consensus 69 k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~ 101 (472)
T TIGR03752 69 KELRKRLAKLISENEALKAENERLQKREQSIDQ 101 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
No 67
>COG4818 Predicted membrane protein [Function unknown]
Probab=31.73 E-value=41 Score=26.84 Aligned_cols=18 Identities=28% Similarity=0.802 Sum_probs=15.5
Q ss_pred hhhhhhhhhhhhhhhccc
Q 047188 169 MSYVLWYRPLYRAMRTDS 186 (271)
Q Consensus 169 ~sf~~WyrplY~A~r~ds 186 (271)
.++.+|--+.|||.|.++
T Consensus 69 ~a~iLwlv~mykAyrGe~ 86 (105)
T COG4818 69 AAFILWLVCMYKAYRGER 86 (105)
T ss_pred HHHHHHHHHHHHHHcCCe
Confidence 478999999999999764
No 68
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=31.30 E-value=78 Score=25.16 Aligned_cols=8 Identities=38% Similarity=0.717 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 047188 73 LKRREKEI 80 (271)
Q Consensus 73 L~~RE~el 80 (271)
|+++.++|
T Consensus 46 l~~~n~~L 53 (105)
T PRK00888 46 LKARNDQL 53 (105)
T ss_pred HHHHHHHH
Confidence 33333333
No 69
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=31.24 E-value=29 Score=33.39 Aligned_cols=28 Identities=25% Similarity=0.398 Sum_probs=18.3
Q ss_pred CCCCchHhHHHhHHHHHHHHHHHHHHHH
Q 047188 55 NMNEPKKKERELASWEADLKRREKEIKR 82 (271)
Q Consensus 55 ~~~~l~~k~~eL~~kE~EL~~RE~el~~ 82 (271)
+-++|++-++|+..||+||+.+.++|++
T Consensus 344 TeEEL~~fE~e~A~ke~El~~ka~~lqq 371 (442)
T KOG3866|consen 344 TEEELQQFEREYAQKEQELQHKAEALQQ 371 (442)
T ss_pred cHHHHHHHHHHHHHHHHHHhchHHHhhC
Confidence 4456666677777777777666666654
No 70
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=30.85 E-value=54 Score=31.60 Aligned_cols=26 Identities=31% Similarity=0.640 Sum_probs=21.4
Q ss_pred hHHHhHHHHHHHHHHHHHHHHHHHHH
Q 047188 62 KERELASWEADLKRREKEIKRREEAI 87 (271)
Q Consensus 62 k~~eL~~kE~EL~~RE~el~~re~~~ 87 (271)
.++||++-|+|+..||+|++...+++
T Consensus 344 TeEEL~~fE~e~A~ke~El~~ka~~l 369 (442)
T KOG3866|consen 344 TEEELQQFEREYAQKEQELQHKAEAL 369 (442)
T ss_pred cHHHHHHHHHHHHHHHHHHhchHHHh
Confidence 57789999999999999988777665
No 71
>cd08765 Cyt_b561_CYBRD1 Vertebrate cytochrome b(561), CYBRD1 gene product. Duodenal cytochrome b or ferric-chelate reductase 3, a cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. This protein is expressed at the brush border of duodenal enterocytes and may play a role in the uptake of dietary Fe(3+), facilitating its transport into the mucosal cells. It may also be involved in the recycling of extracellular ascorbate in erythrocyte membranes, and act as a ferrireductase in epithelial cells of the respiratory system. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-me
Probab=30.70 E-value=48 Score=28.35 Aligned_cols=22 Identities=18% Similarity=0.185 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 047188 237 GIFYMIGFGLFVLESLLSLWVI 258 (271)
Q Consensus 237 gI~~~i~~~~f~~~~~~~~~~l 258 (271)
+.+.++..+++++|.+..+..+
T Consensus 86 SwlGl~t~~l~~lQ~~~Gf~~f 107 (153)
T cd08765 86 SWVGLAAVILYPLQLVLGISVY 107 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666677777776655443
No 72
>PLN02248 cellulose synthase-like protein
Probab=30.67 E-value=8.3e+02 Score=27.60 Aligned_cols=19 Identities=32% Similarity=0.789 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHhhc
Q 047188 249 LESLLSLWVIQKIYMFFRG 267 (271)
Q Consensus 249 ~~~~~~~~~l~~v~~~yR~ 267 (271)
.+.++++|++.-.|=+++|
T Consensus 1071 g~l~~s~Wvv~~lyPf~kG 1089 (1135)
T PLN02248 1071 GGVFFSFWVLAHLYPFAKG 1089 (1135)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4677789998888888874
No 73
>TIGR02047 CadR-PbrR Cd(II)/Pb(II)-responsive transcriptional regulator. This model represents the cadmium(II) and/or lead(II) responsive transcriptional activator of the proteobacterial metal efflux system. This protein is a member of the MerR family of transcriptional activators (pfam00376) and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-X(6-9)-Cys, as well as a conserved and critical cysteine at the N-terminal end of the dimerization helix.
Probab=30.41 E-value=1.3e+02 Score=24.28 Aligned_cols=23 Identities=17% Similarity=0.224 Sum_probs=11.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 047188 66 LASWEADLKRREKEIKRREEAIV 88 (271)
Q Consensus 66 L~~kE~EL~~RE~el~~re~~~~ 88 (271)
|+++.++|+++-++|++..+.++
T Consensus 84 l~~~~~~l~~~i~~L~~~~~~L~ 106 (127)
T TIGR02047 84 LDEHISHVRARIIKLQALIEQLV 106 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555444443
No 74
>PF08467 Luteo_P1-P2: Luteovirus RNA polymerase P1-P2/replicase; InterPro: IPR013674 This domain is found in RNA-dependent RNA polymerase P1-P2 fusion/replicase proteins in plant Luteoviruses. ; GO: 0003968 RNA-directed RNA polymerase activity
Probab=30.39 E-value=44 Score=31.96 Aligned_cols=23 Identities=30% Similarity=0.274 Sum_probs=15.6
Q ss_pred CCcccccCCCCCCCchHhHHHhH
Q 047188 45 YGATVDIPLDNMNEPKKKERELA 67 (271)
Q Consensus 45 ~~~~~~~~~~~~~~l~~k~~eL~ 67 (271)
++|=||.=+|.+.|..+=|.||.
T Consensus 46 HDAFV~Mcyg~M~diEdFE~eLa 68 (361)
T PF08467_consen 46 HDAFVNMCYGHMYDIEDFEAELA 68 (361)
T ss_pred HHHHHHHHHHhhcCHHHHHHHHH
Confidence 45667777777777776666663
No 75
>PF13025 DUF3886: Protein of unknown function (DUF3886)
Probab=29.87 E-value=82 Score=23.57 Aligned_cols=15 Identities=33% Similarity=0.275 Sum_probs=7.4
Q ss_pred chHhHHHhHHHHHHH
Q 047188 59 PKKKERELASWEADL 73 (271)
Q Consensus 59 l~~k~~eL~~kE~EL 73 (271)
|+.+.++|++.|++-
T Consensus 22 Lka~k~eLk~~ee~r 36 (70)
T PF13025_consen 22 LKAKKQELKAEEEKR 36 (70)
T ss_pred HHHHHHHHhHHHHHH
Confidence 445555665444433
No 76
>PLN02189 cellulose synthase
Probab=29.80 E-value=8.3e+02 Score=27.34 Aligned_cols=19 Identities=32% Similarity=0.859 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHhhc
Q 047188 249 LESLLSLWVIQKIYMFFRG 267 (271)
Q Consensus 249 ~~~~~~~~~l~~v~~~yR~ 267 (271)
.+.++++|++.-.|=+++|
T Consensus 973 ~~~~~~~wvv~~~~Pf~kg 991 (1040)
T PLN02189 973 GKLFFAFWVIVHLYPFLKG 991 (1040)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5788999999999988874
No 77
>PHA03065 Hypothetical protein; Provisional
Probab=28.89 E-value=1.3e+02 Score=29.97 Aligned_cols=25 Identities=16% Similarity=0.396 Sum_probs=19.1
Q ss_pred ccccccchhhHH-HHHHHHHHHHHHH
Q 047188 108 HDISKEIPIHAQ-RLQYLAFASWFGI 132 (271)
Q Consensus 108 hdI~~eIP~~~q-~~v~~~y~~wl~~ 132 (271)
-...+||-.+.| |++|..|+.+|+-
T Consensus 117 d~~yEEikt~~~lrI~Kl~F~~fLa~ 142 (438)
T PHA03065 117 DEMYEEIKTDLELKIDKLSFQLFLAN 142 (438)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 344577888887 8999999988754
No 78
>KOG0425 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=28.34 E-value=99 Score=26.82 Aligned_cols=21 Identities=19% Similarity=0.131 Sum_probs=8.9
Q ss_pred chHhHHHhHHHHHHHHHHHHH
Q 047188 59 PKKKERELASWEADLKRREKE 79 (271)
Q Consensus 59 l~~k~~eL~~kE~EL~~RE~e 79 (271)
.++..+|-++|-+++.||++|
T Consensus 145 ~Ren~~EykkkV~r~vr~s~e 165 (171)
T KOG0425|consen 145 WRENPEEYKKKVRRCVRRSQE 165 (171)
T ss_pred HhhCHHHHHHHHHHHHHHHHH
Confidence 333344444444444444443
No 79
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=27.83 E-value=81 Score=28.59 Aligned_cols=18 Identities=22% Similarity=0.674 Sum_probs=7.9
Q ss_pred HhHHHHHHHHHHHHHHHH
Q 047188 65 ELASWEADLKRREKEIKR 82 (271)
Q Consensus 65 eL~~kE~EL~~RE~el~~ 82 (271)
|++..|.||++++.+|+.
T Consensus 159 ~~~kL~~el~~~~~~Le~ 176 (216)
T KOG1962|consen 159 DLEKLETELEKKQKKLEK 176 (216)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 444444444444444443
No 80
>PF14851 FAM176: FAM176 family
Probab=27.64 E-value=1.1e+02 Score=26.26 Aligned_cols=21 Identities=29% Similarity=0.431 Sum_probs=13.4
Q ss_pred HhHHHhHHHHHHHHHHHHHHHH
Q 047188 61 KKERELASWEADLKRREKEIKR 82 (271)
Q Consensus 61 ~k~~eL~~kE~EL~~RE~el~~ 82 (271)
..++||+ +++.|++||+.++.
T Consensus 114 ~sae~~e-~A~rlEeRe~iirE 134 (153)
T PF14851_consen 114 TSAEELE-RAQRLEERERIIRE 134 (153)
T ss_pred ccHHHHH-HHHHHHHHHHHHHH
Confidence 3455664 67777778876653
No 81
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=27.32 E-value=94 Score=24.93 Aligned_cols=26 Identities=27% Similarity=0.481 Sum_probs=15.0
Q ss_pred CchHhHHHhHHHHHHHHH---HHHHHHHH
Q 047188 58 EPKKKERELASWEADLKR---REKEIKRR 83 (271)
Q Consensus 58 ~l~~k~~eL~~kE~EL~~---RE~el~~r 83 (271)
+|+.|+.+|.+.|+|++- |-++|.+|
T Consensus 34 ~Lk~ke~~LRk~eqE~dSL~FrN~QL~kR 62 (102)
T PF10205_consen 34 QLKEKEQALRKLEQENDSLTFRNQQLTKR 62 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666666666633 44445444
No 82
>COG0393 Uncharacterized conserved protein [Function unknown]
Probab=26.83 E-value=1.1e+02 Score=24.79 Aligned_cols=29 Identities=24% Similarity=0.393 Sum_probs=20.8
Q ss_pred HHhHHHHHHHHH-HHHHHHHHHHHHHhcCC
Q 047188 64 RELASWEADLKR-REKEIKRREEAIVKAGV 92 (271)
Q Consensus 64 ~eL~~kE~EL~~-RE~el~~re~~~~~~g~ 92 (271)
.|++.-|++|.+ ||.-|+|-++++++.|.
T Consensus 45 Ge~~~Y~~~l~~aR~~Al~rm~~~A~~lGA 74 (108)
T COG0393 45 GEIKAYEKMLAEAREEALERMVDEAEALGA 74 (108)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 366667777755 88888887777777664
No 83
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=26.67 E-value=86 Score=24.14 Aligned_cols=23 Identities=13% Similarity=0.345 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Q 047188 245 GLFVLESLLSLWVIQKIYMFFRG 267 (271)
Q Consensus 245 ~~f~~~~~~~~~~l~~v~~~yR~ 267 (271)
+...+..++.+.+|..||..||.
T Consensus 10 ialiv~~iiaIvvW~iv~ieYrk 32 (81)
T PF00558_consen 10 IALIVALIIAIVVWTIVYIEYRK 32 (81)
T ss_dssp HHHHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455567778888888874
No 84
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=26.63 E-value=1.5e+02 Score=22.43 Aligned_cols=29 Identities=14% Similarity=0.471 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCCCC
Q 047188 71 ADLKRREKEIKRREEAIVKAGVPTDDRNWP 100 (271)
Q Consensus 71 ~EL~~RE~el~~re~~~~~~g~~~~~~NwP 100 (271)
+||-++-+.++.|=+.+++- ...+.+||-
T Consensus 45 ~~L~~~a~rm~eRI~tLE~I-Ld~e~P~wR 73 (75)
T TIGR02976 45 QELYAKADRLEERIDTLERI-LDAEHPNWR 73 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HcCCCcCcc
Confidence 34434444444444333331 223456774
No 85
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=26.42 E-value=1.1e+02 Score=28.56 Aligned_cols=24 Identities=25% Similarity=0.441 Sum_probs=12.2
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHH
Q 047188 65 ELASWEADLKRREKEIKRREEAIV 88 (271)
Q Consensus 65 eL~~kE~EL~~RE~el~~re~~~~ 88 (271)
+|+.+++||+..+++|++.|++++
T Consensus 201 ~l~~~~~ELe~~~EeL~~~Eke~~ 224 (269)
T PF05278_consen 201 KLELKKEELEELEEELKQKEKEVK 224 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555443
No 86
>PHA02980 hypothetical protein; Provisional
Probab=26.36 E-value=3.7e+02 Score=23.18 Aligned_cols=16 Identities=6% Similarity=-0.027 Sum_probs=8.6
Q ss_pred CchhHHHHHHHHHHHHH
Q 047188 233 SLLAGIFYMIGFGLFVL 249 (271)
Q Consensus 233 ~~~vgI~~~i~~~~f~~ 249 (271)
+.. +-..++.-.+|+.
T Consensus 125 ~~~-Aa~LliPYl~Wv~ 140 (160)
T PHA02980 125 TDI-IDKYVLPYLVTSY 140 (160)
T ss_pred cHH-HHHHHHHHHHHHH
Confidence 444 3445566666763
No 87
>PRK10263 DNA translocase FtsK; Provisional
Probab=25.79 E-value=6.8e+02 Score=28.81 Aligned_cols=11 Identities=18% Similarity=0.715 Sum_probs=4.2
Q ss_pred HHHHHHHHHHh
Q 047188 156 FFLATIYALLG 166 (271)
Q Consensus 156 ~~laiiy~i~g 166 (271)
|+-.+++.++|
T Consensus 70 ~LAD~L~~LFG 80 (1355)
T PRK10263 70 WLADTLFFIFG 80 (1355)
T ss_pred HHHHHHHHHHh
Confidence 33334443333
No 88
>KOG4552 consensus Vitamin-D-receptor interacting protein complex component [Transcription]
Probab=25.43 E-value=85 Score=28.55 Aligned_cols=13 Identities=23% Similarity=0.166 Sum_probs=4.8
Q ss_pred HhHHHHHHHHHHH
Q 047188 65 ELASWEADLKRRE 77 (271)
Q Consensus 65 eL~~kE~EL~~RE 77 (271)
|-.++|++.+..|
T Consensus 68 eq~k~e~~m~~Le 80 (272)
T KOG4552|consen 68 EQQKREQLMRTLE 80 (272)
T ss_pred hHHHHHHHHHHHH
Confidence 3333333333333
No 89
>KOG4721 consensus Serine/threonine protein kinase, contains leucine zipper domain [Signal transduction mechanisms]
Probab=25.41 E-value=82 Score=33.15 Aligned_cols=21 Identities=33% Similarity=0.473 Sum_probs=16.6
Q ss_pred HhHHHHHHHHHHHHHHHHHHH
Q 047188 65 ELASWEADLKRREKEIKRREE 85 (271)
Q Consensus 65 eL~~kE~EL~~RE~el~~re~ 85 (271)
+|+-||+||.+||+.|.||+.
T Consensus 450 qLelkEkElaerEq~l~rr~p 470 (904)
T KOG4721|consen 450 QLELKEKELAEREQALERRCP 470 (904)
T ss_pred HHHHHHHHHHHHHHHHHhhCC
Confidence 567788888888888888774
No 90
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=25.32 E-value=76 Score=31.43 Aligned_cols=22 Identities=23% Similarity=0.353 Sum_probs=9.4
Q ss_pred HhHHHhHHHHHHHHHHHHHHHH
Q 047188 61 KKERELASWEADLKRREKEIKR 82 (271)
Q Consensus 61 ~k~~eL~~kE~EL~~RE~el~~ 82 (271)
.|++...++|+.|++.|.++.+
T Consensus 249 ar~e~I~~re~~lq~lEt~q~~ 270 (499)
T COG4372 249 ARAEQIRERERQLQRLETAQAR 270 (499)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444333
No 91
>PF04521 Viral_P18: ssRNA positive strand viral 18kD cysteine rich protein; InterPro: IPR007609 This family represents the 18kDa cysteine-rich protein from ssRNA positive strand viruses.
Probab=25.27 E-value=83 Score=25.95 Aligned_cols=16 Identities=25% Similarity=0.275 Sum_probs=7.1
Q ss_pred HhHHHhHHHHHHHHHH
Q 047188 61 KKERELASWEADLKRR 76 (271)
Q Consensus 61 ~k~~eL~~kE~EL~~R 76 (271)
.+-+.|++||++|+.+
T Consensus 79 ~~L~~Le~r~e~Lk~~ 94 (120)
T PF04521_consen 79 LELEKLERREEQLKTQ 94 (120)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444444444443
No 92
>COG4741 Predicted secreted endonuclease distantly related to archaeal Holliday junction resolvase [Nucleotide transport and metabolism]
Probab=25.20 E-value=67 Score=27.81 Aligned_cols=9 Identities=44% Similarity=1.039 Sum_probs=3.9
Q ss_pred Ccccceecc
Q 047188 101 PFFPIIHHD 109 (271)
Q Consensus 101 pf~Pi~yhd 109 (271)
|+||=|-.|
T Consensus 97 Pffp~f~yn 105 (175)
T COG4741 97 PFFPEFKYN 105 (175)
T ss_pred ccccCCCcC
Confidence 455544333
No 93
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=24.89 E-value=1.2e+02 Score=22.05 Aligned_cols=13 Identities=31% Similarity=0.427 Sum_probs=5.3
Q ss_pred HhHHHHHHHHHHH
Q 047188 65 ELASWEADLKRRE 77 (271)
Q Consensus 65 eL~~kE~EL~~RE 77 (271)
+|.+-|.+++..+
T Consensus 7 ~l~~ie~~l~~~~ 19 (71)
T PF10779_consen 7 KLNRIETKLDNHE 19 (71)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444333
No 94
>PF13025 DUF3886: Protein of unknown function (DUF3886)
Probab=24.84 E-value=1.5e+02 Score=22.13 Aligned_cols=17 Identities=41% Similarity=0.474 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 047188 68 SWEADLKRREKEIKRRE 84 (271)
Q Consensus 68 ~kE~EL~~RE~el~~re 84 (271)
++|+|-.+|.++-+.||
T Consensus 36 r~e~e~~~~~~erk~rE 52 (70)
T PF13025_consen 36 RKEEERARRREERKERE 52 (70)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444444444433444
No 95
>cd04769 HTH_MerR2 Helix-Turn-Helix DNA binding domain of MerR2-like transcription regulators. Helix-turn-helix (HTH) transcription regulator MerR2 and related proteins. MerR2 in Bacillus cereus RC607 regulates resistance to organomercurials. The MerR family transcription regulators have been shown to mediate responses to stress including exposure to heavy metals, drugs, or oxygen radicals in eubacterial and some archaeal species. They regulate transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=24.82 E-value=1.4e+02 Score=23.70 Aligned_cols=20 Identities=10% Similarity=0.217 Sum_probs=9.3
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 047188 66 LASWEADLKRREKEIKRREE 85 (271)
Q Consensus 66 L~~kE~EL~~RE~el~~re~ 85 (271)
|+++.++|+++-+++++..+
T Consensus 84 l~~~~~~l~~~i~~l~~~~~ 103 (116)
T cd04769 84 LEDKKQEIRAQITELQQLLA 103 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444555444444444433
No 96
>COG4312 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.78 E-value=83 Score=28.85 Aligned_cols=27 Identities=19% Similarity=0.184 Sum_probs=15.0
Q ss_pred CCCCchHhHHHhHHHHHHHHHHHHHHH
Q 047188 55 NMNEPKKKERELASWEADLKRREKEIK 81 (271)
Q Consensus 55 ~~~~l~~k~~eL~~kE~EL~~RE~el~ 81 (271)
..+|-...-+.|-+||+||.|..+++.
T Consensus 14 s~e~w~~AR~~lL~kEkeLtR~rd~va 40 (247)
T COG4312 14 SREEWLAAREALLAKEKELTRARDAVA 40 (247)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334544444455567777776544453
No 97
>PRK10697 DNA-binding transcriptional activator PspC; Provisional
Probab=24.70 E-value=1.5e+02 Score=24.28 Aligned_cols=25 Identities=16% Similarity=0.275 Sum_probs=17.2
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHH
Q 047188 63 ERELASWEADLKRREKEIKRREEAI 87 (271)
Q Consensus 63 ~~eL~~kE~EL~~RE~el~~re~~~ 87 (271)
.+-|++-++||++-|+.|++-|+-.
T Consensus 80 ~~~l~~~~~~~~~~e~Rlr~mE~yV 104 (118)
T PRK10697 80 SELLDEVDRELAAGEQRLREMERYV 104 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3446667777778887777777643
No 98
>KOG2881 consensus Predicted membrane protein [Function unknown]
Probab=24.52 E-value=41 Score=31.60 Aligned_cols=20 Identities=25% Similarity=0.559 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 047188 70 EADLKRREKEIKRREEAIVK 89 (271)
Q Consensus 70 E~EL~~RE~el~~re~~~~~ 89 (271)
|+|+++-|+||+.||.+.++
T Consensus 160 ~eE~eEVe~el~~~~~~~~~ 179 (294)
T KOG2881|consen 160 QEELEEVEAELAKREDELDR 179 (294)
T ss_pred hhhHHHHHHHHHhccchhhh
Confidence 67777777777777665543
No 99
>PF12537 DUF3735: Protein of unknown function (DUF3735); InterPro: IPR022535 This conserved domain is found in a subunit of a voltage dependent anion channel required for acidification and functions of the Golgi apparatus; it may function in counter-ion conductance. It belongs to the Golgi pH regulator (1.A.38 from TC) family
Probab=24.32 E-value=1.2e+02 Score=22.31 Aligned_cols=24 Identities=13% Similarity=0.202 Sum_probs=15.8
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHH
Q 047188 63 ERELASWEADLKRREKEIKRREEA 86 (271)
Q Consensus 63 ~~eL~~kE~EL~~RE~el~~re~~ 86 (271)
+.++..+|+.|++-.+.+..|.++
T Consensus 47 ~~~i~~~~~~l~~t~~~l~~Kk~~ 70 (72)
T PF12537_consen 47 ESDINNAERRLWHTRDMLVEKKKR 70 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777777777766666555544
No 100
>PRK02898 cobalt transport protein CbiN; Provisional
Probab=24.29 E-value=39 Score=27.02 Aligned_cols=29 Identities=31% Similarity=0.450 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 047188 242 IGFGLFVLESLLSLWVIQKIYMFFRGTSE 270 (271)
Q Consensus 242 i~~~~f~~~~~~~~~~l~~v~~~yR~~G~ 270 (271)
|-+.||++|+.+..-++--+.-||||..+
T Consensus 66 iESLLFaLQAAiGAgiIgY~lG~~~gr~~ 94 (100)
T PRK02898 66 IESLLFALQAALGAGIIGYILGYYKGRSK 94 (100)
T ss_pred HHHHHHHHHHHHhhhhhheeeeehhhhhh
Confidence 77899999999999999988889988653
No 101
>PF04108 APG17: Autophagy protein Apg17 ; InterPro: IPR007240 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Autophagy protein 17 (Apg17) is required for activating Apg1 protein kinases. This entry also contains Autophagy protein 11 which is involved in cytoplasm to vacuole transport (Cvt) and pexophagy. ; GO: 0006914 autophagy
Probab=24.04 E-value=1.5e+02 Score=29.10 Aligned_cols=37 Identities=27% Similarity=0.452 Sum_probs=25.8
Q ss_pred HhHHHHHHHHH-HHHHHHHHHHHHHhcCCCCCCCCCCC
Q 047188 65 ELASWEADLKR-REKEIKRREEAIVKAGVPTDDRNWPP 101 (271)
Q Consensus 65 eL~~kE~EL~~-RE~el~~re~~~~~~g~~~~~~NwPp 101 (271)
-++.-++||++ +|+|.++||+=.++.|......=||-
T Consensus 368 i~~~~~eeL~~l~eeE~~~Re~F~~e~GdyLP~diwpg 405 (412)
T PF04108_consen 368 IIREANEELDKLREEEQRRREAFLKEYGDYLPEDIWPG 405 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccCcCChhhCCC
Confidence 34455677766 88999999998888886653333663
No 102
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=23.90 E-value=1.3e+02 Score=26.08 Aligned_cols=21 Identities=24% Similarity=0.385 Sum_probs=9.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHH
Q 047188 65 ELASWEADLKRREKEIKRREE 85 (271)
Q Consensus 65 eL~~kE~EL~~RE~el~~re~ 85 (271)
||.+-|+|.+...+-|..+|+
T Consensus 37 EL~KvEeEI~TLrqvL~aKer 57 (162)
T PF04201_consen 37 ELAKVEEEIQTLRQVLAAKER 57 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455555554444444444443
No 103
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=23.89 E-value=54 Score=32.45 Aligned_cols=26 Identities=31% Similarity=0.460 Sum_probs=16.3
Q ss_pred chHhHHHhHHHHHHHHHHHHHHHHHH
Q 047188 59 PKKKERELASWEADLKRREKEIKRRE 84 (271)
Q Consensus 59 l~~k~~eL~~kE~EL~~RE~el~~re 84 (271)
++.|+-+-+++++|++++|+++++.+
T Consensus 371 ~~~r~~~y~~~~~E~~~l~~~Ir~~~ 396 (418)
T PF14727_consen 371 LESREIDYEELEEELKELEKEIRESQ 396 (418)
T ss_pred cccccCCHHHHHHHHHHHHHHHHhhh
Confidence 34455555667777777777776544
No 104
>PF09036 Bcr-Abl_Oligo: Bcr-Abl oncoprotein oligomerisation domain; InterPro: IPR015123 This entry represents the oligomerisation domain of the breakpoint cluster region oncoprotein Bcr, and the Bcr/Abl (Abelson-leukemia-virus) fusion protein created by a reciprocal (9;22) fusion []. Brc displays serine/threonine protein kinase activity (2.7.11.1 from EC), acting as a GTPase-activating protein for RAC1 and CDC42. Brc promotes the exchange of RAC or CDC42-bound GDP by GTP, thereby activating them []. The Bcr/Abl fusion protein loses some of the regulatory function of Bcr with regards to small Rho-like GTPases with negative consequences on cell motility, in particular on the capacity to adhere to endothelial cells []. The Bcr, Bcr/Abl oncoprotein oligomerisation domain consists of a short N-terminal helix (alpha-1), a flexible loop and a long C-terminal helix (alpha-2). Together these form an N-shaped structure, with the loop allowing the two helices to assume a parallel orientation. The monomeric domains associate into a dimer through the formation of an antiparallel coiled coil between the alpha-2 helices and domain swapping of two alpha-1 helices, where one alpha-1 helix swings back and packs against the alpha-2 helix from the second monomer. Two dimers then associate into a tetramer. The oligomerisation domain is essential for the oncogenicity of the Bcr-Abl protein []. ; GO: 0004674 protein serine/threonine kinase activity, 0005096 GTPase activator activity, 0006468 protein phosphorylation, 0007165 signal transduction; PDB: 1K1F_C.
Probab=23.87 E-value=1.4e+02 Score=22.75 Aligned_cols=26 Identities=27% Similarity=0.448 Sum_probs=18.5
Q ss_pred CCchHhHHHhHHHHHHHHHHHHHHHH
Q 047188 57 NEPKKKERELASWEADLKRREKEIKR 82 (271)
Q Consensus 57 ~~l~~k~~eL~~kE~EL~~RE~el~~ 82 (271)
...-.-+.||++=..-++|.|+|+.+
T Consensus 26 ~svgd~e~eLerCK~sirrLeqevnk 51 (79)
T PF09036_consen 26 RSVGDIEQELERCKASIRRLEQEVNK 51 (79)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHHHHHH
Confidence 34455777888777778888888753
No 105
>PF07047 OPA3: Optic atrophy 3 protein (OPA3); InterPro: IPR010754 OPA3 deficiency causes type III 3-methylglutaconic aciduria (MGA) in humans. This disease manifests with early bilateral optic atrophy, spasticity, extrapyramidal dysfunction, ataxia, and cognitive deficits, but normal longevity []. This family consists of several optic atrophy 3 (OPA3) proteins and related proteins from other eukaryotic species, the function is unknown.
Probab=23.69 E-value=1.2e+02 Score=25.02 Aligned_cols=31 Identities=29% Similarity=0.342 Sum_probs=19.5
Q ss_pred CchHhHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 047188 58 EPKKKERELASWEADLKRREKEIKRREEAIV 88 (271)
Q Consensus 58 ~l~~k~~eL~~kE~EL~~RE~el~~re~~~~ 88 (271)
|..+..+.=++||++++.+.++|+.+.+++.
T Consensus 95 E~~Rs~~ke~~Ke~~~~~~l~~L~~~i~~L~ 125 (134)
T PF07047_consen 95 EYWRSARKEAKKEEELQERLEELEERIEELE 125 (134)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3433333335678888777777877766654
No 106
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=23.57 E-value=47 Score=33.59 Aligned_cols=25 Identities=20% Similarity=0.267 Sum_probs=12.9
Q ss_pred chHhHHHhHHHHHHHHHHHHHHHHH
Q 047188 59 PKKKERELASWEADLKRREKEIKRR 83 (271)
Q Consensus 59 l~~k~~eL~~kE~EL~~RE~el~~r 83 (271)
+++|-+||+++-+||++..+++++|
T Consensus 29 ~~qkie~L~kql~~Lk~q~~~l~~~ 53 (489)
T PF11853_consen 29 LLQKIEALKKQLEELKAQQDDLNDR 53 (489)
T ss_pred HHHHHHHHHHHHHHHHHhhcccccc
Confidence 3345555555555555544445444
No 107
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=23.57 E-value=1.3e+02 Score=22.72 Aligned_cols=21 Identities=19% Similarity=0.501 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 047188 67 ASWEADLKRREKEIKRREEAI 87 (271)
Q Consensus 67 ~~kE~EL~~RE~el~~re~~~ 87 (271)
+.+|+|++.+|++++++.+-+
T Consensus 55 eeq~~~i~~Le~~i~~k~~~L 75 (83)
T PF07544_consen 55 EEQEEEIEELEEQIRKKREVL 75 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666555544433
No 108
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=23.52 E-value=1.9e+02 Score=21.11 Aligned_cols=26 Identities=15% Similarity=0.262 Sum_probs=12.3
Q ss_pred chHhHHHhHHHHHHHHHHHHHHHHHH
Q 047188 59 PKKKERELASWEADLKRREKEIKRRE 84 (271)
Q Consensus 59 l~~k~~eL~~kE~EL~~RE~el~~re 84 (271)
+++|-.+++.|-.++++|...+.++.
T Consensus 4 i~e~l~~ie~~l~~~~~~i~~lE~~~ 29 (71)
T PF10779_consen 4 IKEKLNRIETKLDNHEERIDKLEKRD 29 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444445444555554444443
No 109
>PRK12377 putative replication protein; Provisional
Probab=23.52 E-value=1.3e+02 Score=27.36 Aligned_cols=13 Identities=23% Similarity=0.532 Sum_probs=7.3
Q ss_pred HHHHHHHhcCCCC
Q 047188 82 RREEAIVKAGVPT 94 (271)
Q Consensus 82 ~re~~~~~~g~~~ 94 (271)
+.|+.+.++|.+.
T Consensus 54 ~~~~~~~~s~i~~ 66 (248)
T PRK12377 54 RVEKILNRSGIQP 66 (248)
T ss_pred HHHHHHHHcCCCc
Confidence 3455566677543
No 110
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=23.51 E-value=1.2e+02 Score=25.87 Aligned_cols=11 Identities=27% Similarity=0.625 Sum_probs=4.4
Q ss_pred HHHHHHHHHHH
Q 047188 72 DLKRREKEIKR 82 (271)
Q Consensus 72 EL~~RE~el~~ 82 (271)
++++.|+||++
T Consensus 74 k~~kl~~el~~ 84 (161)
T PF04420_consen 74 KLDKLEEELEK 84 (161)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33334444433
No 111
>PHA02148 hypothetical protein
Probab=23.44 E-value=1.3e+02 Score=23.77 Aligned_cols=15 Identities=53% Similarity=0.767 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHH
Q 047188 74 KRREKEIKRREEAIV 88 (271)
Q Consensus 74 ~~RE~el~~re~~~~ 88 (271)
++||.||++.|.+++
T Consensus 58 ~~R~NEL~~HE~Air 72 (110)
T PHA02148 58 KSRENELRRHEAAIR 72 (110)
T ss_pred HHHHHHHHHHHHHHH
Confidence 446666666665443
No 112
>PF10810 DUF2545: Protein of unknown function (DUF2545) ; InterPro: IPR024470 This family of proteins with unknown function appear to be restricted to Enterobacteriaceae. Their sequences are highly conserved.
Probab=23.40 E-value=1.8e+02 Score=22.00 Aligned_cols=10 Identities=20% Similarity=0.411 Sum_probs=6.3
Q ss_pred HHHHHHHHHH
Q 047188 127 ASWFGIVLCL 136 (271)
Q Consensus 127 ~~wl~~~~~L 136 (271)
|.|+++++|.
T Consensus 3 YlW~FL~lsI 12 (80)
T PF10810_consen 3 YLWTFLALSI 12 (80)
T ss_pred hhHHHHHHHH
Confidence 6777666553
No 113
>PLN03140 ABC transporter G family member; Provisional
Probab=23.27 E-value=7.3e+02 Score=28.73 Aligned_cols=36 Identities=25% Similarity=0.515 Sum_probs=15.7
Q ss_pred HHHHHHhhhhhhhhhhhhhhhhhhcccchhHHHHHHHHH
Q 047188 160 TIYALLGVPMSYVLWYRPLYRAMRTDSALKFSWFFLFYL 198 (271)
Q Consensus 160 iiy~i~g~P~sf~~WyrplY~A~r~dss~~f~~fF~~~~ 198 (271)
+-|.++..-+...+||..+ .++. +..+|++|+++.+
T Consensus 1300 iP~~~~~~~if~~i~Y~m~--Gl~~-~~~~f~~~~~~~~ 1335 (1470)
T PLN03140 1300 IPYVLIQTTYYTLIVYAMV--AFEW-TAAKFFWFYFISF 1335 (1470)
T ss_pred HHHHHHHHHHHHHHHHhhc--CCCc-cHHHHHHHHHHHH
Confidence 3343444444445555542 2222 3345555555433
No 114
>KOG3231 consensus Predicted assembly/vacuolar sorting protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.13 E-value=1.4e+02 Score=26.26 Aligned_cols=24 Identities=21% Similarity=0.473 Sum_probs=12.3
Q ss_pred CchHhHHHhHHHHHHHHHHHHHHH
Q 047188 58 EPKKKERELASWEADLKRREKEIK 81 (271)
Q Consensus 58 ~l~~k~~eL~~kE~EL~~RE~el~ 81 (271)
+|.+.++++++--+.++++|++|.
T Consensus 19 eLRkt~RdierdRr~me~~Ek~LE 42 (208)
T KOG3231|consen 19 ELRKTQRDIERDRRAMEKQEKQLE 42 (208)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHH
Confidence 455555555554455555554443
No 115
>PLN02436 cellulose synthase A
Probab=23.08 E-value=1.1e+03 Score=26.54 Aligned_cols=19 Identities=37% Similarity=0.880 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHhhc
Q 047188 249 LESLLSLWVIQKIYMFFRG 267 (271)
Q Consensus 249 ~~~~~~~~~l~~v~~~yR~ 267 (271)
.+.++++|++.-.|=+++|
T Consensus 1027 ~~l~~~~wvvv~lyPf~kg 1045 (1094)
T PLN02436 1027 GRLFFALWVIVHLYPFLKG 1045 (1094)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5788899999888887774
No 116
>PF11712 Vma12: Endoplasmic reticulum-based factor for assembly of V-ATPase; InterPro: IPR021013 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. The yeast vacuolar proton-translocating ATPase (V-ATPase) is the best characterised member of the V-ATPase family. A total of thirteen genes are required for encoding the subunits of the enzyme complex itself and an additional three for providing factors necessary for the assembly of the whole. Vma12 is one of these latter, all three of which are localised to the endoplasmic reticulum [].
Probab=23.00 E-value=1.5e+02 Score=24.59 Aligned_cols=44 Identities=16% Similarity=0.092 Sum_probs=21.8
Q ss_pred cchhhHHHHHHHh-hcCchhHHHH--HHHHHHHHHHHHHHHHHHHHH
Q 047188 218 KSLTGILAAIDVI-SDSLLAGIFY--MIGFGLFVLESLLSLWVIQKI 261 (271)
Q Consensus 218 ~g~~G~i~ai~~~-~~~~~vgI~~--~i~~~~f~~~~~~~~~~l~~v 261 (271)
.+.+||..+-..+ ..+....++. +.+.+...+|.++-+-.+.|+
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~Rvllgl~~al~vlvAEv~l~~~y~~k~ 138 (142)
T PF11712_consen 92 VFFAGWYWAGYSFGGWSFPYRVLLGLFGALLVLVAEVVLYIRYLRKV 138 (142)
T ss_pred HHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3457887776666 3343333322 233344445665554444443
No 117
>PLN03181 glycosyltransferase; Provisional
Probab=22.97 E-value=64 Score=32.18 Aligned_cols=22 Identities=27% Similarity=0.367 Sum_probs=10.4
Q ss_pred CchHhHHHhHHHHHHHHHHHHH
Q 047188 58 EPKKKERELASWEADLKRREKE 79 (271)
Q Consensus 58 ~l~~k~~eL~~kE~EL~~RE~e 79 (271)
++.+|.+|++|+..-|+||-+|
T Consensus 337 ~~~~~y~~~er~~~~lrrrhae 358 (453)
T PLN03181 337 NITERYLEMEREDATLRRRHAE 358 (453)
T ss_pred HHHHHHHHhhhcchhhhhhhhh
Confidence 3344444555544445554444
No 118
>PF15304 AKAP2_C: A-kinase anchor protein 2 C-terminus
Probab=22.91 E-value=69 Score=30.98 Aligned_cols=23 Identities=30% Similarity=0.596 Sum_probs=14.2
Q ss_pred HhHHHhHHHHHHH---HHHHHHHHHH
Q 047188 61 KKERELASWEADL---KRREKEIKRR 83 (271)
Q Consensus 61 ~k~~eL~~kE~EL---~~RE~el~~r 83 (271)
+|+.-+..-|+|+ ++||+||+++
T Consensus 207 ~~~~t~s~iE~EIr~~~eRE~EL~~Q 232 (344)
T PF15304_consen 207 RKQQTSSMIEEEIRAAQEREEELKRQ 232 (344)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555 5699999763
No 119
>PF12607 DUF3772: Protein of unknown function (DUF3772); InterPro: IPR022249 This domain family is found in bacteria, and is approximately 60 amino acids in length. The family is found in association with PF00924 from PFAM.
Probab=22.90 E-value=1.7e+02 Score=20.91 Aligned_cols=26 Identities=27% Similarity=0.509 Sum_probs=13.9
Q ss_pred cCCCCCCCCCCCcccceeccccccchhhHHHHHH
Q 047188 90 AGVPTDDRNWPPFFPIIHHDISKEIPIHAQRLQY 123 (271)
Q Consensus 90 ~g~~~~~~NwPpf~Pi~yhdI~~eIP~~~q~~v~ 123 (271)
.+.+..|.+|++- -.+.|.+.+++..
T Consensus 33 ~~SpL~P~~W~~~--------~~~~~~d~~rl~~ 58 (64)
T PF12607_consen 33 SPSPLNPAFWSPA--------AAELPDDLRRLGA 58 (64)
T ss_pred CCCCCCHHHHHHH--------HHHhHHHHHHHHH
Confidence 3344445556553 2566677766544
No 120
>COG5346 Predicted membrane protein [Function unknown]
Probab=22.81 E-value=4.6e+02 Score=21.94 Aligned_cols=33 Identities=21% Similarity=0.366 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHH
Q 047188 131 GIVLCLVFNVIAVIVCWIKGGGVKIFFLATIYALL 165 (271)
Q Consensus 131 ~~~~~L~~N~i~~~~~~i~g~~~~~~~laiiy~i~ 165 (271)
.+-++|+|-+.-.+++-..|| +.+.+|..+++.
T Consensus 96 iFgi~LVvsi~~~tla~~~~G--tv~alAlaFv~~ 128 (136)
T COG5346 96 IFGIFLVVSIFPKTLASLAGG--TVFALALAFVIG 128 (136)
T ss_pred HHHHHHHHHHHHHHHHHHccc--hHHHHHHHHHHh
Confidence 334556555554444333333 346666666543
No 121
>PRK11431 multidrug efflux system protein; Provisional
Probab=22.78 E-value=1.6e+02 Score=23.36 Aligned_cols=65 Identities=17% Similarity=0.261 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHhhhhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHHHHhhhe
Q 047188 128 SWFGIVLCLVFNVIAVIVCWIKGGGVKIFFLATIYALLGVPMSYVLWYRPLYRAMRTDSALKFSWFFLFYLIHIGFCIFA 207 (271)
Q Consensus 128 ~wl~~~~~L~~N~i~~~~~~i~g~~~~~~~laiiy~i~g~P~sf~~WyrplY~A~r~dss~~f~~fF~~~~~~i~f~v~~ 207 (271)
.|+.+.++.+.-+++.+..--+ ++.+.+.-+++- +.+..+| |.-+.+|+|+= + +-++|.+|.
T Consensus 2 ~wl~L~~Ai~~Ev~~t~~Lk~s-~gf~~~~~~~~~-i~~~~~s----f~~Ls~al~~i-p-----------~gvaYAvW~ 63 (105)
T PRK11431 2 SWIILVIAGLLEVVWAVGLKYT-HGFSRLTPSIIT-VTAMIVS----MALLAWAMKSL-P-----------VGTAYAVWT 63 (105)
T ss_pred hHHHHHHHHHHHHHHHHHHHhh-hCCccHHHHHHH-HHHHHHH----HHHHHHHHhhC-C-----------cHhHHHHHH
Confidence 3666666667777766544322 222333222222 3333344 44467788751 1 355677777
Q ss_pred eec
Q 047188 208 AIA 210 (271)
Q Consensus 208 aIG 210 (271)
.+|
T Consensus 64 GiG 66 (105)
T PRK11431 64 GIG 66 (105)
T ss_pred HHH
Confidence 665
No 122
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=22.62 E-value=1e+02 Score=22.20 Aligned_cols=21 Identities=24% Similarity=0.200 Sum_probs=9.2
Q ss_pred HhHHHhHHHHHHHHHHHHHHH
Q 047188 61 KKERELASWEADLKRREKEIK 81 (271)
Q Consensus 61 ~k~~eL~~kE~EL~~RE~el~ 81 (271)
.-|++|+.-|+|++.-|.+++
T Consensus 36 ~LE~rL~~ae~ra~~ae~~~~ 56 (60)
T PF11471_consen 36 ALEQRLQAAEQRAQAAEARAK 56 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444433
No 123
>PF10828 DUF2570: Protein of unknown function (DUF2570); InterPro: IPR022538 This entry is represented by Bacteriophage IME08, pseT.3. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of proteins with unknown function.
Probab=22.52 E-value=95 Score=24.67 Aligned_cols=18 Identities=17% Similarity=0.294 Sum_probs=9.0
Q ss_pred cceeccccccchhhHHHH
Q 047188 104 PIIHHDISKEIPIHAQRL 121 (271)
Q Consensus 104 Pi~yhdI~~eIP~~~q~~ 121 (271)
||-......++-..+||+
T Consensus 91 ~Ca~~~~P~~V~d~L~~~ 108 (110)
T PF10828_consen 91 PCANTAVPDAVIDSLRRL 108 (110)
T ss_pred ccccCCCCHHHHHHHHHh
Confidence 344444445555555554
No 124
>PF09278 MerR-DNA-bind: MerR, DNA binding; InterPro: IPR015358 This entry represents a family of DNA-binding domains that are predominantly found in the prokaryotic transcriptional regulator MerR. They adopt a structure consisting of a core of three alpha helices, with an architecture that is similar to that of the 'winged helix' fold []. ; PDB: 3QAO_A 1R8D_B 1JBG_A 2VZ4_A 2ZHH_A 2ZHG_A 1Q09_A 1Q08_B 1Q0A_B 1Q07_A ....
Probab=22.51 E-value=1.4e+02 Score=20.74 Aligned_cols=21 Identities=10% Similarity=0.099 Sum_probs=9.7
Q ss_pred HhHHHHHHHHHHHHHHHHHHH
Q 047188 65 ELASWEADLKRREKEIKRREE 85 (271)
Q Consensus 65 eL~~kE~EL~~RE~el~~re~ 85 (271)
-+++|-+++++|-++|++-++
T Consensus 40 ~l~~~~~~i~~~i~~L~~~~~ 60 (65)
T PF09278_consen 40 LLEEKLEEIEEQIAELQALRA 60 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444455554444544333
No 125
>COG4064 MtrG Tetrahydromethanopterin S-methyltransferase, subunit G [Coenzyme metabolism]
Probab=22.49 E-value=3.4e+02 Score=20.40 Aligned_cols=23 Identities=17% Similarity=0.602 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 047188 122 QYLAFASWFGIVLCLVFNVIAVI 144 (271)
Q Consensus 122 v~~~y~~wl~~~~~L~~N~i~~~ 144 (271)
.-++|.+=+++.+|+++|.+.+.
T Consensus 50 IGILYGlVIGlil~~i~~~l~~~ 72 (75)
T COG4064 50 IGILYGLVIGLILCMIYILLGVA 72 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788888999999999888764
No 126
>PF12848 ABC_tran_2: ABC transporter
Probab=22.38 E-value=1.8e+02 Score=21.25 Aligned_cols=22 Identities=36% Similarity=0.511 Sum_probs=9.6
Q ss_pred HhHHHhHHHHHHHHHHHHHHHH
Q 047188 61 KKERELASWEADLKRREKEIKR 82 (271)
Q Consensus 61 ~k~~eL~~kE~EL~~RE~el~~ 82 (271)
.|+++++..+++.++.+.++++
T Consensus 21 ~k~~~~~~~~~~~~~~~k~~~~ 42 (85)
T PF12848_consen 21 QKEERRERQERQYEKQQKEIKR 42 (85)
T ss_pred HHHHHHHHHHHhHHHHHHHHHH
Confidence 3444444444444444444443
No 127
>KOG2890 consensus Predicted membrane protein [Function unknown]
Probab=22.31 E-value=81 Score=30.15 Aligned_cols=16 Identities=25% Similarity=0.337 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 047188 67 ASWEADLKRREKEIKR 82 (271)
Q Consensus 67 ~~kE~EL~~RE~el~~ 82 (271)
+|||..||+.||+|++
T Consensus 292 RRRQ~alkaL~eRl~~ 307 (326)
T KOG2890|consen 292 RRRQLALKALEERLKK 307 (326)
T ss_pred HHHHHHHHHHHHHhcC
Confidence 4566666777766654
No 128
>PF09501 Bac_small_YrzI: Probable sporulation protein (Bac_small_yrzI); InterPro: IPR012655 Members of this family are very small proteins, about 47 residues each, in the genus Bacillus. Single members are found in Bacillus subtilis and Bacillus halodurans, while arrays of six members in tandem are found in Bacillus cereus and Bacillus anthracis. An EIxxE motif present in most members of this family resembles cleavage sites by the germination protease GPR in a number of small acid-soluble spore proteins (SASP). A role in sporulation is possible.
Probab=22.30 E-value=1.2e+02 Score=20.72 Aligned_cols=22 Identities=36% Similarity=0.524 Sum_probs=14.3
Q ss_pred hHHHhHHHHHHHHHHHHHHHHHH
Q 047188 62 KERELASWEADLKRREKEIKRRE 84 (271)
Q Consensus 62 k~~eL~~kE~EL~~RE~el~~re 84 (271)
.++|+. +|++.++-++|++.|+
T Consensus 18 S~~Ei~-~~qq~~~~~deik~rq 39 (46)
T PF09501_consen 18 SEEEIL-HEQQIKKIMDEIKDRQ 39 (46)
T ss_pred CHHHHH-HHHHHHHHHHHHHHHH
Confidence 455653 6777777777776664
No 129
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=22.13 E-value=1.3e+02 Score=27.34 Aligned_cols=25 Identities=24% Similarity=0.360 Sum_probs=16.4
Q ss_pred CCCchHhHHHhHHHHHHHHHHHHHH
Q 047188 56 MNEPKKKERELASWEADLKRREKEI 80 (271)
Q Consensus 56 ~~~l~~k~~eL~~kE~EL~~RE~el 80 (271)
.+|+.+.++||++++.+|++.+.+.
T Consensus 157 ~~~~~kL~~el~~~~~~Le~~~~~~ 181 (216)
T KOG1962|consen 157 KADLEKLETELEKKQKKLEKAQKKV 181 (216)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466677777777777776655543
No 130
>PF11368 DUF3169: Protein of unknown function (DUF3169); InterPro: IPR021509 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.
Probab=22.01 E-value=3.2e+02 Score=24.60 Aligned_cols=31 Identities=16% Similarity=0.253 Sum_probs=20.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 047188 236 AGIFYMIGFGLFVLESLLSLWVIQKIYMFFR 266 (271)
Q Consensus 236 vgI~~~i~~~~f~~~~~~~~~~l~~v~~~yR 266 (271)
+..+..++..+..+..++..+.+++..+++|
T Consensus 47 ~~~~~~i~~~~~~i~~~~~~~~~~~~~k~~~ 77 (248)
T PF11368_consen 47 IPWISFIALLIIIILFLLTFYFIYKSRKYKK 77 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666666777777777777665
No 131
>PRK12855 hypothetical protein; Provisional
Probab=22.00 E-value=1.5e+02 Score=23.61 Aligned_cols=28 Identities=14% Similarity=0.278 Sum_probs=18.3
Q ss_pred HhHHHHHHHHH-HHHHHHHHHHHHHhcCC
Q 047188 65 ELASWEADLKR-REKEIKRREEAIVKAGV 92 (271)
Q Consensus 65 eL~~kE~EL~~-RE~el~~re~~~~~~g~ 92 (271)
|++.-|+.|++ |++-++|-++++++.|.
T Consensus 46 ~~~~Y~~~l~~aR~~A~~rm~~~A~~lGA 74 (103)
T PRK12855 46 RSGAYESKLKEARDIAMEEMKTLARQKNA 74 (103)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 44556666655 77778876666666653
No 132
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=22.00 E-value=1e+02 Score=24.69 Aligned_cols=19 Identities=26% Similarity=0.358 Sum_probs=12.8
Q ss_pred HHHhHHHHHHHHHHHHHHH
Q 047188 63 ERELASWEADLKRREKEIK 81 (271)
Q Consensus 63 ~~eL~~kE~EL~~RE~el~ 81 (271)
.++|..||++|++.|+|+.
T Consensus 32 ~e~Lk~ke~~LRk~eqE~d 50 (102)
T PF10205_consen 32 KEQLKEKEQALRKLEQEND 50 (102)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777753
No 133
>PRK12856 hypothetical protein; Provisional
Probab=21.60 E-value=1.6e+02 Score=23.49 Aligned_cols=28 Identities=25% Similarity=0.414 Sum_probs=17.9
Q ss_pred HhHHHHHHHHH-HHHHHHHHHHHHHhcCC
Q 047188 65 ELASWEADLKR-REKEIKRREEAIVKAGV 92 (271)
Q Consensus 65 eL~~kE~EL~~-RE~el~~re~~~~~~g~ 92 (271)
|++.-|++|++ |++-++|-.+++++.|.
T Consensus 46 ~~~~Y~~~l~~aR~~A~~rm~~~A~~lGA 74 (103)
T PRK12856 46 RAGSYESKLKEARDIAMDEMKELAKQKGA 74 (103)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 34556666655 77778776666666553
No 134
>PF05241 EBP: Emopamil binding protein ; InterPro: IPR007905 Emopamil binding protein (EBP) is a nonglycosylated type I integral membrane protein of endoplasmic reticulum and shows high level expression in epithelial tissues. The EBP protein has emopamil binding domains, including the sterol acceptor site and the catalytic centre, which show Delta8-Delta7 sterol isomerase activity. Human sterol isomerase, a homologue of mouse EBP, is suggested not only to play a role in cholesterol biosynthesis, but also to affect lipoprotein internalisation. In humans, mutations of EBP are known to cause the genetic disorder of X-linked dominant chondrodysplasia punctata (CDPX2). This syndrome of humans is lethal in most males, and affected females display asymmetric hyperkeratotic skin and skeletal abnormalities [].; GO: 0047750 cholestenol delta-isomerase activity, 0016125 sterol metabolic process, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=21.38 E-value=3e+02 Score=24.15 Aligned_cols=85 Identities=24% Similarity=0.160 Sum_probs=47.2
Q ss_pred hhhhhhhhcccchhHHHHHHHHHHHHHHhhheeecCCcccc-CcchhhHHHHHHHhhc------CchhHHHHHHHHHHHH
Q 047188 176 RPLYRAMRTDSALKFSWFFLFYLIHIGFCIFAAIAPPVVFH-GKSLTGILAAIDVISD------SLLAGIFYMIGFGLFV 248 (271)
Q Consensus 176 rplY~A~r~dss~~f~~fF~~~~~~i~f~v~~aIG~p~~f~-g~g~~G~i~ai~~~~~------~~~vgI~~~i~~~~f~ 248 (271)
|.+.+.+.+....-+.||.+.-.+|+.+..+...-.+..=+ +.+.-+.+.......| +..+-.+-.+...+++
T Consensus 21 ~~~~~~~~~~~r~~~~W~~~~~~iH~~~eG~f~~~~~~~~~~~~~~~~~lWkeYa~~D~RY~~~D~~vv~~e~~t~l~~G 100 (194)
T PF05241_consen 21 RRLPPSLSKGDRFVFLWFALDGLIHFFLEGYFVYFRPFSPGTSQSLLAQLWKEYAKADSRYLTSDPFVVCMESITVLLEG 100 (194)
T ss_pred hccCCCCchhhHHHHHHHHHHhhHHheEeeehheechhccccccchHHHHHHHHccCCcccccCCCcEEeehhHHHHHHh
Confidence 55566666666788999999999999888777665542100 1122233333332222 2333344445555666
Q ss_pred HHHHHHHHHHHH
Q 047188 249 LESLLSLWVIQK 260 (271)
Q Consensus 249 ~~~~~~~~~l~~ 260 (271)
..+++.++.+.+
T Consensus 101 pl~l~~~~~i~~ 112 (194)
T PF05241_consen 101 PLCLLAAYLIAK 112 (194)
T ss_pred HHHHHHHHHHHh
Confidence 555555554443
No 135
>PF06476 DUF1090: Protein of unknown function (DUF1090); InterPro: IPR009468 This family consists of several bacterial proteins of unknown function and is known as YqjC in Escherichia coli.
Probab=21.13 E-value=1.3e+02 Score=24.41 Aligned_cols=17 Identities=35% Similarity=0.505 Sum_probs=8.8
Q ss_pred CchHhHHHhHHHHHHHH
Q 047188 58 EPKKKERELASWEADLK 74 (271)
Q Consensus 58 ~l~~k~~eL~~kE~EL~ 74 (271)
...+++.++..+|+||+
T Consensus 71 ki~~~~~kV~ere~eL~ 87 (115)
T PF06476_consen 71 KIAEKQQKVAEREAELK 87 (115)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34445555555555553
No 136
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=21.12 E-value=1.6e+02 Score=27.60 Aligned_cols=24 Identities=42% Similarity=0.605 Sum_probs=14.4
Q ss_pred chHhHHHhHHHHHHHHHHHHHHHH
Q 047188 59 PKKKERELASWEADLKRREKEIKR 82 (271)
Q Consensus 59 l~~k~~eL~~kE~EL~~RE~el~~ 82 (271)
+..+.+||+..++||+++|++++.
T Consensus 202 l~~~~~ELe~~~EeL~~~Eke~~e 225 (269)
T PF05278_consen 202 LELKKEELEELEEELKQKEKEVKE 225 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344456666666666666666544
No 137
>PTZ00421 coronin; Provisional
Probab=20.96 E-value=1.5e+02 Score=29.70 Aligned_cols=31 Identities=26% Similarity=0.361 Sum_probs=18.0
Q ss_pred CCchHhHHHhHHHHHHHHHHHHHHHHHHHHH
Q 047188 57 NEPKKKERELASWEADLKRREKEIKRREEAI 87 (271)
Q Consensus 57 ~~l~~k~~eL~~kE~EL~~RE~el~~re~~~ 87 (271)
.++..|.+.|++..++|+..++|++|-.+++
T Consensus 446 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (493)
T PTZ00421 446 GILDERLGRLQALSEKLRTQHEEIKRCREAL 476 (493)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666666666666533333
No 138
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=20.92 E-value=1.7e+02 Score=23.18 Aligned_cols=16 Identities=13% Similarity=0.202 Sum_probs=6.8
Q ss_pred HhHHHHHHHHHHHHHH
Q 047188 65 ELASWEADLKRREKEI 80 (271)
Q Consensus 65 eL~~kE~EL~~RE~el 80 (271)
+|+++.++|+++-+.|
T Consensus 45 ~l~~~n~~L~~eI~~L 60 (105)
T PRK00888 45 KLKARNDQLFAEIDDL 60 (105)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 4444444444433333
No 139
>TIGR03221 muco_delta muconolactone delta-isomerase. Members of this protein family are muconolactone delta-isomerase (EC 5.3.3.4), the CatC protein of the ortho cleavage pathway for metabolizing aromatic compounds by way of catechol.
Probab=20.88 E-value=1.1e+02 Score=23.96 Aligned_cols=8 Identities=38% Similarity=0.846 Sum_probs=4.8
Q ss_pred ccccCCCC
Q 047188 48 TVDIPLDN 55 (271)
Q Consensus 48 ~~~~~~~~ 55 (271)
||.+|.+.
T Consensus 7 ~V~~P~~~ 14 (90)
T TIGR03221 7 DVNLPVDM 14 (90)
T ss_pred EeeCCCCC
Confidence 56666644
No 140
>PLN02400 cellulose synthase
Probab=20.85 E-value=1.2e+03 Score=26.20 Aligned_cols=20 Identities=30% Similarity=0.853 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHhhc
Q 047188 248 VLESLLSLWVIQKIYMFFRG 267 (271)
Q Consensus 248 ~~~~~~~~~~l~~v~~~yR~ 267 (271)
..+.++++|++.-.|=+++|
T Consensus 1016 ~~~~~~~~wvvv~l~Pf~kg 1035 (1085)
T PLN02400 1016 FGKLFFAIWVIAHLYPFLKG 1035 (1085)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 35888999999998888874
No 141
>PF07795 DUF1635: Protein of unknown function (DUF1635); InterPro: IPR012862 The members of this family include sequences that are parts of hypothetical proteins expressed by plant species. The region in question is about 170 amino acids long.
Probab=20.81 E-value=1.5e+02 Score=26.90 Aligned_cols=14 Identities=21% Similarity=0.333 Sum_probs=7.6
Q ss_pred hHHHhHHHHHHHHH
Q 047188 62 KERELASWEADLKR 75 (271)
Q Consensus 62 k~~eL~~kE~EL~~ 75 (271)
..+|++|+|+++++
T Consensus 24 A~EElRk~eeqi~~ 37 (214)
T PF07795_consen 24 ANEELRKREEQIAH 37 (214)
T ss_pred HHHHHHHHHHHHHH
Confidence 34566666665533
No 142
>KOG3955 consensus Heparan sulfate 6-O-sulfotransferase [Cell wall/membrane/envelope biogenesis; Carbohydrate transport and metabolism]
Probab=20.71 E-value=60 Score=30.82 Aligned_cols=16 Identities=44% Similarity=0.841 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 047188 72 DLKRREKEIKRREEAI 87 (271)
Q Consensus 72 EL~~RE~el~~re~~~ 87 (271)
.|++||+.|+.||+.+
T Consensus 342 qlerreqrlrsrEERl 357 (361)
T KOG3955|consen 342 QLERREQRLRSREERL 357 (361)
T ss_pred HHHHHHHHhhhhHhhh
Confidence 5566666666666544
No 143
>PRK13752 putative transcriptional regulator MerR; Provisional
Probab=20.65 E-value=1.9e+02 Score=24.17 Aligned_cols=23 Identities=13% Similarity=0.199 Sum_probs=11.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHH
Q 047188 65 ELASWEADLKRREKEIKRREEAI 87 (271)
Q Consensus 65 eL~~kE~EL~~RE~el~~re~~~ 87 (271)
-|++|.++++++-++|++.++.+
T Consensus 88 ll~~k~~~l~~~i~~L~~~~~~L 110 (144)
T PRK13752 88 LAEHKLKDVREKMADLARMEAVL 110 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555544444
No 144
>cd07912 Tweety_N N-terminal domain of the protein encoded by the Drosophila tweety gene and related proteins, a family of chloride ion channels. The protein product of the Drosophila tweety (tty) gene is thought to form a trans-membrane protein with five membrane-spanning regions and a cytoplasmic C-terminus. This N-terminal domain contains the putative transmembrane spanning regions. Tweety has been suggested as a candidate for a large conductance chloride channel, both in vertebrate and insect cells. Three human homologs have been identified and designated TTYH1-3. TTYH2 has been associated with the progression of cancer, and Drosophila melanogaster tweety has been assumed to play a role in development. TTYH2, and TTYH3 bind to and are ubiquinated by Nedd4-2, a HECT type E3 ubiquitin ligase, which most likely plays a role in controlling the cellular levels of tweety family proteins.
Probab=20.58 E-value=8.4e+02 Score=24.21 Aligned_cols=30 Identities=10% Similarity=0.271 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 047188 119 QRLQYLAFASWFGIVLCLVFNVIAVIVCWI 148 (271)
Q Consensus 119 q~~v~~~y~~wl~~~~~L~~N~i~~~~~~i 148 (271)
......=++=|+++++.|++.++.|+++++
T Consensus 199 ~~~~~~E~~Rw~~~l~lL~~~lviC~~~l~ 228 (418)
T cd07912 199 DQVSLYESYRWLAYLGLLSLLLVICLVLLV 228 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677788899999999999998887664
No 145
>TIGR02043 ZntR Zn(II)-responsive transcriptional regulator. This model represents the zinc and cadmium (II) responsive transcriptional activator of the gamma proteobacterial zinc efflux system. This protein is a member of the MerR family of transcriptional activators (pfam00376) and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-Cys-X(8-9)-Cys, as well as a conserved and critical cysteine at the N-terminal end of the dimerization helix.
Probab=20.52 E-value=1.6e+02 Score=23.90 Aligned_cols=23 Identities=4% Similarity=0.069 Sum_probs=10.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHH
Q 047188 65 ELASWEADLKRREKEIKRREEAI 87 (271)
Q Consensus 65 eL~~kE~EL~~RE~el~~re~~~ 87 (271)
-|+++.++|+++-++|++.++.+
T Consensus 85 ~l~~~~~~l~~~i~~L~~~~~~L 107 (131)
T TIGR02043 85 IVDAKLELVDEKINELTKIRRSL 107 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555554444333
No 146
>PF14015 DUF4231: Protein of unknown function (DUF4231)
Probab=20.52 E-value=3.8e+02 Score=20.44 Aligned_cols=28 Identities=18% Similarity=0.352 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 047188 241 MIGFGLFVLESLLSLWVIQKIYMFFRGT 268 (271)
Q Consensus 241 ~i~~~~f~~~~~~~~~~l~~v~~~yR~~ 268 (271)
+++++.-.+.++.+..-.++-|.-||.+
T Consensus 57 ~l~~~~~~~~~~~~~~~~~~~W~~~r~t 84 (112)
T PF14015_consen 57 ILSALAAILASLAAFFRFHERWIRYRAT 84 (112)
T ss_pred HHHHHHHHHHHHHHHhchhHHHHHHHHH
Confidence 4444444556666677777777777753
No 147
>PTZ00436 60S ribosomal protein L19-like protein; Provisional
Probab=20.31 E-value=1.3e+02 Score=28.87 Aligned_cols=13 Identities=31% Similarity=0.677 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHH
Q 047188 67 ASWEADLKRREKE 79 (271)
Q Consensus 67 ~~kE~EL~~RE~e 79 (271)
..+.+||++||.|
T Consensus 172 ~~~~~~~~~~~~~ 184 (357)
T PTZ00436 172 KARKQELRKREKD 184 (357)
T ss_pred HHHHHHHHHhHHH
Confidence 3444555554433
No 148
>KOG1690 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.25 E-value=1.4e+02 Score=26.94 Aligned_cols=36 Identities=22% Similarity=0.381 Sum_probs=0.0
Q ss_pred CCCCCchHhHHHhHHHHHHHHHHHHHHHH-HHHHHHhc
Q 047188 54 DNMNEPKKKERELASWEADLKRREKEIKR-REEAIVKA 90 (271)
Q Consensus 54 ~~~~~l~~k~~eL~~kE~EL~~RE~el~~-re~~~~~~ 90 (271)
.+.+.+..|.+.|..|-.+++ |||.+.| ||+..+..
T Consensus 139 e~~k~l~~Rv~~L~~~~~~Ir-kEQ~~~R~RE~~FR~t 175 (215)
T KOG1690|consen 139 ETDKLLEGRVRQLNSRLESIR-KEQNLQREREETFRDT 175 (215)
T ss_pred hhhhhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhh
No 149
>PRK00295 hypothetical protein; Provisional
Probab=20.24 E-value=1.8e+02 Score=21.28 Aligned_cols=18 Identities=11% Similarity=0.198 Sum_probs=8.4
Q ss_pred HhHHHhHHHHHHHHHHHH
Q 047188 61 KKERELASWEADLKRREK 78 (271)
Q Consensus 61 ~k~~eL~~kE~EL~~RE~ 78 (271)
+.++++++.+++|+...+
T Consensus 30 ~Qq~~I~~L~~ql~~L~~ 47 (68)
T PRK00295 30 EQQRVIERLQLQMAALIK 47 (68)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444455544554444333
No 150
>KOG4552 consensus Vitamin-D-receptor interacting protein complex component [Transcription]
Probab=20.22 E-value=1.2e+02 Score=27.61 Aligned_cols=24 Identities=25% Similarity=0.508 Sum_probs=10.5
Q ss_pred HhHHHhHHHHHHHHHHHHHHHHHH
Q 047188 61 KKERELASWEADLKRREKEIKRRE 84 (271)
Q Consensus 61 ~k~~eL~~kE~EL~~RE~el~~re 84 (271)
+++++++..|++.++|.+++++-|
T Consensus 71 k~e~~m~~Lea~VEkrD~~IQqLq 94 (272)
T KOG4552|consen 71 KREQLMRTLEAHVEKRDEVIQQLQ 94 (272)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHH
Confidence 344444444444444444444433
No 151
>PF14851 FAM176: FAM176 family
Probab=20.18 E-value=2.6e+02 Score=23.96 Aligned_cols=42 Identities=26% Similarity=0.102 Sum_probs=31.7
Q ss_pred hhHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047188 221 TGILAAIDVISDSLLAGIFYMIGFGLFVLESLLSLWVIQKIY 262 (271)
Q Consensus 221 ~G~i~ai~~~~~~~~vgI~~~i~~~~f~~~~~~~~~~l~~v~ 262 (271)
..++.|...+.+|.=-..+||+..++++|...+++.+++--.
T Consensus 6 SnsLaaya~I~~~PE~~aLYFv~gVC~GLlLtLcllV~risc 47 (153)
T PF14851_consen 6 SNSLAAYAHIRDNPERFALYFVSGVCAGLLLTLCLLVIRISC 47 (153)
T ss_pred HHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHhhhee
Confidence 467777777888876667888888888888888777765443
No 152
>PF04281 Tom22: Mitochondrial import receptor subunit Tom22 ; InterPro: IPR005683 The mitochondrial protein translocase family, which is responsible for movement of nuclear encoded pre-proteins into mitochondria, is very complex with at least 19 components. These proteins include several chaperone proteins, four proteins of the outer membrane translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family represents the Tom22 proteins []. The N-terminal region of Tom22 has been shown to have chaperone-like activity, and the C-terminal region faces the intermembrane face []. ; GO: 0006886 intracellular protein transport, 0005741 mitochondrial outer membrane
Probab=20.07 E-value=1.6e+02 Score=24.79 Aligned_cols=20 Identities=30% Similarity=0.619 Sum_probs=16.5
Q ss_pred hHHHHHHHHHHHhhhhhhhh
Q 047188 154 KIFFLATIYALLGVPMSYVL 173 (271)
Q Consensus 154 ~~~~laiiy~i~g~P~sf~~ 173 (271)
..|+++.-.+|+|+|+++-+
T Consensus 93 a~Wi~tTSallLgvPl~l~i 112 (137)
T PF04281_consen 93 ALWIVTTSALLLGVPLALEI 112 (137)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 46888888889999998754
No 153
>PRK00967 hypothetical protein; Provisional
Probab=20.05 E-value=1.8e+02 Score=23.10 Aligned_cols=28 Identities=25% Similarity=0.415 Sum_probs=18.2
Q ss_pred HhHHHHHHHHH-HHHHHHHHHHHHHhcCC
Q 047188 65 ELASWEADLKR-REKEIKRREEAIVKAGV 92 (271)
Q Consensus 65 eL~~kE~EL~~-RE~el~~re~~~~~~g~ 92 (271)
|++.-|+.|++ |++-++|-++++++.|.
T Consensus 46 e~~~y~~~l~~aR~eA~~rm~~~A~~~GA 74 (105)
T PRK00967 46 EIKGYTEMLTEARDIAIDRMKEEAKQKGA 74 (105)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 45566666755 77777776666666553
Done!