Query 047188
Match_columns 271
No_of_seqs 219 out of 401
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 14:55:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047188.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047188hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3nmd_A CGMP dependent protein 90.3 0.39 1.3E-05 35.0 4.7 31 58-88 27-57 (72)
2 3nmd_A CGMP dependent protein 79.3 2.5 8.5E-05 30.8 4.3 31 59-89 21-51 (72)
3 1lq7_A Alpha3W; three helix bu 75.7 2 6.8E-05 29.7 2.8 34 55-88 26-65 (67)
4 3a7o_A Autophagy protein 16; c 68.1 8.2 0.00028 27.9 4.7 32 59-90 20-51 (75)
5 2oqq_A Transcription factor HY 66.4 9.3 0.00032 24.8 4.2 24 58-81 7-30 (42)
6 1zxa_A CGMP-dependent protein 66.3 6.8 0.00023 28.0 3.9 33 57-89 18-50 (67)
7 2oqq_A Transcription factor HY 61.1 16 0.00054 23.7 4.5 26 62-87 4-29 (42)
8 1zxa_A CGMP-dependent protein 60.9 9.1 0.00031 27.4 3.8 30 60-89 14-43 (67)
9 3he4_B Synzip5; heterodimeric 56.4 18 0.00063 23.1 4.2 25 57-81 6-30 (46)
10 3he4_B Synzip5; heterodimeric 52.0 15 0.0005 23.6 3.2 26 62-87 4-29 (46)
11 2do5_A Splicing factor 3B subu 44.4 33 0.0011 23.3 4.2 37 64-100 14-55 (58)
12 4egx_A Kinesin-like protein KI 42.2 22 0.00076 29.7 3.9 25 69-93 28-52 (184)
13 1g6u_A Domain swapped dimer; d 40.1 46 0.0016 21.4 4.2 19 64-82 20-38 (48)
14 3p01_A Two-component response 38.7 24 0.00081 27.7 3.4 21 62-82 11-31 (184)
15 2qdq_A Talin-1; dimerisation d 37.3 48 0.0017 22.2 4.1 17 64-80 15-31 (50)
16 2f95_B Sensory rhodopsin II tr 34.0 8.6 0.00029 29.7 0.0 11 65-75 127-137 (163)
17 2b5u_A Colicin E3; high resolu 32.2 17 0.00057 35.5 1.6 31 56-86 293-324 (551)
18 2js5_A Uncharacterized protein 31.3 54 0.0019 23.6 3.9 17 65-81 7-23 (71)
19 2lw1_A ABC transporter ATP-bin 30.7 72 0.0025 23.2 4.7 29 60-88 18-46 (89)
20 1y66_A Engrailed homeodomain; 30.4 54 0.0018 21.4 3.4 20 63-82 5-24 (52)
21 2yy0_A C-MYC-binding protein; 30.3 59 0.002 21.8 3.7 26 58-83 23-48 (53)
22 1u2m_A Histone-like protein HL 27.9 16 0.00054 28.8 0.6 15 104-118 123-138 (143)
23 1a93_A Coiled coil, LZ, MYC pr 27.6 90 0.0031 19.3 3.9 25 59-83 5-29 (34)
24 1k1f_A Breakpoint cluster regi 27.2 1E+02 0.0035 21.9 4.6 25 58-82 27-51 (72)
25 2ad6_B Methanol dehydrogenase 26.5 72 0.0024 22.5 3.7 29 63-91 34-62 (69)
26 1abz_A Alpha-T-alpha, ATA; de 24.6 1E+02 0.0035 19.1 3.7 10 72-81 25-34 (40)
27 3csx_A Putative uncharacterize 24.3 44 0.0015 24.6 2.4 15 108-122 39-53 (81)
28 3p01_A Two-component response 23.9 53 0.0018 25.6 3.1 19 57-75 13-31 (184)
29 1gmj_A ATPase inhibitor; coile 23.7 1.3E+02 0.0043 22.3 4.8 15 72-86 52-66 (84)
30 2j5u_A MREC protein; bacterial 23.6 83 0.0028 27.5 4.5 28 56-83 28-55 (255)
31 1a92_A Delta antigen; leucine 23.0 76 0.0026 21.1 3.1 16 70-85 20-35 (50)
32 1w6s_B Methanol dehydrogenase 22.6 92 0.0031 22.3 3.7 29 63-91 34-62 (74)
33 2aze_A Transcription factor DP 22.2 1E+02 0.0035 25.4 4.5 18 60-77 15-32 (155)
34 2lq4_p Lysophosphatidic acid r 22.1 23 0.0008 25.0 0.5 26 63-88 5-30 (80)
35 2oxj_A Hybrid alpha/beta pepti 21.9 51 0.0017 20.3 1.9 18 58-75 5-22 (34)
36 1fmh_A General control protein 21.6 1.4E+02 0.0047 17.8 4.4 26 60-85 4-29 (33)
37 2q2f_A Selenoprotein S; anti-p 21.4 1.5E+02 0.005 22.1 4.7 15 61-75 55-69 (89)
38 2v4h_A NF-kappa-B essential mo 20.6 1.2E+02 0.0042 23.5 4.3 28 59-86 33-60 (110)
39 2aze_A Transcription factor DP 20.6 1.3E+02 0.0044 24.8 4.7 24 58-81 6-29 (155)
40 3sw1_A Sensory box protein; li 20.5 32 0.0011 25.2 1.1 20 65-84 141-160 (162)
No 1
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=90.34 E-value=0.39 Score=35.05 Aligned_cols=31 Identities=26% Similarity=0.321 Sum_probs=20.3
Q ss_pred CchHhHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 047188 58 EPKKKERELASWEADLKRREKEIKRREEAIV 88 (271)
Q Consensus 58 ~l~~k~~eL~~kE~EL~~RE~el~~re~~~~ 88 (271)
.|.+|.+||.+|++.++++|.+|..++.+++
T Consensus 27 ~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~ 57 (72)
T 3nmd_A 27 ALQEKIEELRQRDALIDELELELDQKDELIQ 57 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666777777777777777766666554
No 2
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=79.34 E-value=2.5 Score=30.76 Aligned_cols=31 Identities=16% Similarity=0.179 Sum_probs=18.4
Q ss_pred chHhHHHhHHHHHHHHHHHHHHHHHHHHHHh
Q 047188 59 PKKKERELASWEADLKRREKEIKRREEAIVK 89 (271)
Q Consensus 59 l~~k~~eL~~kE~EL~~RE~el~~re~~~~~ 89 (271)
+.+-+..|++|.+||+.|++.++..|..+.+
T Consensus 21 i~eLq~~L~~K~eELr~kd~~I~eLEk~L~e 51 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRDALIDELELELDQ 51 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445556666666666666666666655543
No 3
>1lq7_A Alpha3W; three helix bundle, de novo protein; NMR {} SCOP: k.9.1.1
Probab=75.66 E-value=2 Score=29.65 Aligned_cols=34 Identities=41% Similarity=0.463 Sum_probs=26.0
Q ss_pred CCCCchHhHHHhHHHHHHH------HHHHHHHHHHHHHHH
Q 047188 55 NMNEPKKKERELASWEADL------KRREKEIKRREEAIV 88 (271)
Q Consensus 55 ~~~~l~~k~~eL~~kE~EL------~~RE~el~~re~~~~ 88 (271)
+-++|+++=+||++|-+|| ++-|+|.++-|++++
T Consensus 26 rieelkkkweelkkkieelggggevkkveeevkkleeeik 65 (67)
T 1lq7_A 26 RIEELKKKWEELKKKIEELGGGGEVKKVEEEVKKLEEEIK 65 (67)
T ss_dssp SHHHHHHHHHHHHHHHHHTTSSSTHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHh
Confidence 4467888888888888877 667888887777664
No 4
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=68.10 E-value=8.2 Score=27.90 Aligned_cols=32 Identities=19% Similarity=0.240 Sum_probs=24.5
Q ss_pred chHhHHHhHHHHHHHHHHHHHHHHHHHHHHhc
Q 047188 59 PKKKERELASWEADLKRREKEIKRREEAIVKA 90 (271)
Q Consensus 59 l~~k~~eL~~kE~EL~~RE~el~~re~~~~~~ 90 (271)
++.-++||..||+|..+.++.++-|.++.++.
T Consensus 20 l~~Lr~eL~~Ke~eI~~L~e~i~lk~kd~ErL 51 (75)
T 3a7o_A 20 LAILQKELKSKEQEIRRLKEVIALKNKNTERL 51 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccHHHh
Confidence 45667788889999888888888777766553
No 5
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=66.42 E-value=9.3 Score=24.82 Aligned_cols=24 Identities=17% Similarity=0.382 Sum_probs=13.4
Q ss_pred CchHhHHHhHHHHHHHHHHHHHHH
Q 047188 58 EPKKKERELASWEADLKRREKEIK 81 (271)
Q Consensus 58 ~l~~k~~eL~~kE~EL~~RE~el~ 81 (271)
||..|.++|+.|-+||+.|=.-|+
T Consensus 7 eLE~r~k~le~~naeLEervstLq 30 (42)
T 2oqq_A 7 ELENRVKDLENKNSELEERLSTLQ 30 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666655544443
No 6
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=66.26 E-value=6.8 Score=28.04 Aligned_cols=33 Identities=24% Similarity=0.297 Sum_probs=22.8
Q ss_pred CCchHhHHHhHHHHHHHHHHHHHHHHHHHHHHh
Q 047188 57 NEPKKKERELASWEADLKRREKEIKRREEAIVK 89 (271)
Q Consensus 57 ~~l~~k~~eL~~kE~EL~~RE~el~~re~~~~~ 89 (271)
+.++.|++.....|.+|+.+++|++.-++.+.+
T Consensus 18 ~~i~~Kde~I~eLE~~L~~kd~eI~eLr~~LdK 50 (67)
T 1zxa_A 18 KILMLKEERIKELEKRLSEKEEEIQELKRKLHK 50 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777777777888788887775555554
No 7
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=61.09 E-value=16 Score=23.73 Aligned_cols=26 Identities=23% Similarity=0.346 Sum_probs=21.0
Q ss_pred hHHHhHHHHHHHHHHHHHHHHHHHHH
Q 047188 62 KERELASWEADLKRREKEIKRREEAI 87 (271)
Q Consensus 62 k~~eL~~kE~EL~~RE~el~~re~~~ 87 (271)
--.||+.|.+||+.|-.||..|-.-+
T Consensus 4 Yl~eLE~r~k~le~~naeLEervstL 29 (42)
T 2oqq_A 4 YLSELENRVKDLENKNSELEERLSTL 29 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45689999999999999998876443
No 8
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=60.91 E-value=9.1 Score=27.37 Aligned_cols=30 Identities=27% Similarity=0.309 Sum_probs=21.7
Q ss_pred hHhHHHhHHHHHHHHHHHHHHHHHHHHHHh
Q 047188 60 KKKERELASWEADLKRREKEIKRREEAIVK 89 (271)
Q Consensus 60 ~~k~~eL~~kE~EL~~RE~el~~re~~~~~ 89 (271)
.+..+.+..|++..++.|.+|+.+++++++
T Consensus 14 e~~~~~i~~Kde~I~eLE~~L~~kd~eI~e 43 (67)
T 1zxa_A 14 EDFAKILMLKEERIKELEKRLSEKEEEIQE 43 (67)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccHHHHHHHHHHHHHHHHHHHH
Confidence 456778888888888888888888777654
No 9
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=56.36 E-value=18 Score=23.09 Aligned_cols=25 Identities=32% Similarity=0.389 Sum_probs=15.0
Q ss_pred CCchHhHHHhHHHHHHHHHHHHHHH
Q 047188 57 NEPKKKERELASWEADLKRREKEIK 81 (271)
Q Consensus 57 ~~l~~k~~eL~~kE~EL~~RE~el~ 81 (271)
++|+.--+||+.|.+||+...+.|+
T Consensus 6 kelknyiqeleernaelknlkehlk 30 (46)
T 3he4_B 6 KELKNYIQELEERNAELKNLKEHLK 30 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHhHHHHHH
Confidence 3556666666666666666554443
No 10
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=52.01 E-value=15 Score=23.56 Aligned_cols=26 Identities=27% Similarity=0.491 Sum_probs=20.1
Q ss_pred hHHHhHHHHHHHHHHHHHHHHHHHHH
Q 047188 62 KERELASWEADLKRREKEIKRREEAI 87 (271)
Q Consensus 62 k~~eL~~kE~EL~~RE~el~~re~~~ 87 (271)
.-+||+.--+||++|.+||+.-.+.+
T Consensus 4 tvkelknyiqeleernaelknlkehl 29 (46)
T 3he4_B 4 TVKELKNYIQELEERNAELKNLKEHL 29 (46)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhHHHHhHHHHH
Confidence 35688888899999999988755544
No 11
>2do5_A Splicing factor 3B subunit 2; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=44.35 E-value=33 Score=23.25 Aligned_cols=37 Identities=22% Similarity=0.322 Sum_probs=22.4
Q ss_pred HHhHHHHHHHH-----HHHHHHHHHHHHHHhcCCCCCCCCCC
Q 047188 64 RELASWEADLK-----RREKEIKRREEAIVKAGVPTDDRNWP 100 (271)
Q Consensus 64 ~eL~~kE~EL~-----~RE~el~~re~~~~~~g~~~~~~NwP 100 (271)
.||++|-+|+- .||+-+.|-+--.++.|....++|-|
T Consensus 14 ~ELQaKLaE~GAPi~g~REElvdRLk~Y~~QtGi~lnkP~~~ 55 (58)
T 2do5_A 14 QELQAKLAEIGAPIQGNREELVERLQSYTRQTGIVLNRPSGP 55 (58)
T ss_dssp HHHHHHHHHHTCCCCSCHHHHHHHHHHHHHHHCCCCCCTTCS
T ss_pred HHHHHHHHHhCCcccccHHHHHHHHHHHhhccceeecCCCCC
Confidence 47777777772 26655555444445667766566654
No 12
>4egx_A Kinesin-like protein KIF1A; FHA domain, transport protein; 2.51A {Homo sapiens}
Probab=42.18 E-value=22 Score=29.72 Aligned_cols=25 Identities=36% Similarity=0.632 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCC
Q 047188 69 WEADLKRREKEIKRREEAIVKAGVP 93 (271)
Q Consensus 69 kE~EL~~RE~el~~re~~~~~~g~~ 93 (271)
||+.|++-|+..+.||+++++.|..
T Consensus 28 WeeKl~~te~~~~e~~~~l~~~gi~ 52 (184)
T 4egx_A 28 WEEKLRRTEAIRMEREALLAEMGVA 52 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCcc
Confidence 5566655444445577777777754
No 13
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=40.15 E-value=46 Score=21.39 Aligned_cols=19 Identities=37% Similarity=0.539 Sum_probs=12.8
Q ss_pred HHhHHHHHHHHHHHHHHHH
Q 047188 64 RELASWEADLKRREKEIKR 82 (271)
Q Consensus 64 ~eL~~kE~EL~~RE~el~~ 82 (271)
+||.+.|.||+..|..|..
T Consensus 20 eelaaleselqalekklaa 38 (48)
T 1g6u_A 20 EELAALESELQALEKKLAA 38 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4677777777777766544
No 14
>3p01_A Two-component response regulator; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG, signali protein; 2.65A {Nostoc SP}
Probab=38.73 E-value=24 Score=27.73 Aligned_cols=21 Identities=14% Similarity=0.200 Sum_probs=12.8
Q ss_pred hHHHhHHHHHHHHHHHHHHHH
Q 047188 62 KERELASWEADLKRREKEIKR 82 (271)
Q Consensus 62 k~~eL~~kE~EL~~RE~el~~ 82 (271)
..+||+++++||++++++++-
T Consensus 11 ~~~~l~~~~~~l~~~~~~~~~ 31 (184)
T 3p01_A 11 TYDLLKQRTEELRRANAQMSL 31 (184)
T ss_dssp THHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455666677777666655443
No 15
>2qdq_A Talin-1; dimerisation domain, C-terminal actin binding site, ABS3, latch domain, structural protein; 2.20A {Mus musculus}
Probab=37.33 E-value=48 Score=22.25 Aligned_cols=17 Identities=24% Similarity=0.397 Sum_probs=8.9
Q ss_pred HHhHHHHHHHHHHHHHH
Q 047188 64 RELASWEADLKRREKEI 80 (271)
Q Consensus 64 ~eL~~kE~EL~~RE~el 80 (271)
+++-++|+||+.-...|
T Consensus 15 e~iLr~ErELEeAr~~L 31 (50)
T 2qdq_A 15 EEMLRKERELEEARKKL 31 (50)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34445666665544444
No 16
>2f95_B Sensory rhodopsin II transducer; membrane protein complex, signal transduction, photocycle ST membrane protein; HET: BOG RET; 2.20A {Natronomonas pharaonis} SCOP: f.17.4.1
Probab=34.03 E-value=8.6 Score=29.70 Aligned_cols=11 Identities=18% Similarity=0.117 Sum_probs=0.0
Q ss_pred HhHHHHHHHHH
Q 047188 65 ELASWEADLKR 75 (271)
Q Consensus 65 eL~~kE~EL~~ 75 (271)
+|++..+|+++
T Consensus 127 ~l~~~~~~~~~ 137 (163)
T 2f95_B 127 SVRTSLEDAKN 137 (163)
T ss_dssp -----------
T ss_pred HHHHHHHHHHH
Confidence 33333334333
No 17
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=32.16 E-value=17 Score=35.53 Aligned_cols=31 Identities=13% Similarity=0.160 Sum_probs=18.4
Q ss_pred CCCchHhHHHhHHHHHHHHH-HHHHHHHHHHH
Q 047188 56 MNEPKKKERELASWEADLKR-REKEIKRREEA 86 (271)
Q Consensus 56 ~~~l~~k~~eL~~kE~EL~~-RE~el~~re~~ 86 (271)
.+++++|++|-+|+|+|-.+ .+.|..+||.+
T Consensus 293 ~~elkqrqeee~r~~qew~~~hp~~~Aer~~e 324 (551)
T 2b5u_A 293 PDQVKQRQDEENRRQQEWDATHPVEAAERNYE 324 (551)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhcCcHHHHHHHHH
Confidence 35677788877777777633 33344444433
No 18
>2js5_A Uncharacterized protein; homodimer, protein structure, spectroscopy, structural genomics, PSI-2, protein structure initiative; NMR {Methylococcus capsulatus}
Probab=31.26 E-value=54 Score=23.57 Aligned_cols=17 Identities=24% Similarity=0.274 Sum_probs=7.6
Q ss_pred HhHHHHHHHHHHHHHHH
Q 047188 65 ELASWEADLKRREKEIK 81 (271)
Q Consensus 65 eL~~kE~EL~~RE~el~ 81 (271)
||+++=+.|++|--+.+
T Consensus 7 eLkkevkKL~~~A~q~k 23 (71)
T 2js5_A 7 ELKAKLKKLNAQATALK 23 (71)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444444454444433
No 19
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=30.73 E-value=72 Score=23.22 Aligned_cols=29 Identities=21% Similarity=0.240 Sum_probs=24.5
Q ss_pred hHhHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 047188 60 KKKERELASWEADLKRREKEIKRREEAIV 88 (271)
Q Consensus 60 ~~k~~eL~~kE~EL~~RE~el~~re~~~~ 88 (271)
.+.++||+.-|+++.+.|+++..-+..++
T Consensus 18 ykeqrEle~le~~Ie~LE~~i~~le~~la 46 (89)
T 2lw1_A 18 YKLQRELEQLPQLLEDLEAKLEALQTQVA 46 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46678999999999999999988777765
No 20
>1y66_A Engrailed homeodomain; protein design, dioxane, de novo protein; 1.65A {Escherichia coli} PDB: 2p6j_A
Probab=30.43 E-value=54 Score=21.42 Aligned_cols=20 Identities=25% Similarity=0.378 Sum_probs=12.4
Q ss_pred HHHhHHHHHHHHHHHHHHHH
Q 047188 63 ERELASWEADLKRREKEIKR 82 (271)
Q Consensus 63 ~~eL~~kE~EL~~RE~el~~ 82 (271)
.+|.+||-.|.-||-+|+.+
T Consensus 5 seeverklkefvrrhqeitq 24 (52)
T 1y66_A 5 SEEVERKLKEFVRRHQEITQ 24 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34666666666666666653
No 21
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=30.27 E-value=59 Score=21.84 Aligned_cols=26 Identities=12% Similarity=0.109 Sum_probs=17.6
Q ss_pred CchHhHHHhHHHHHHHHHHHHHHHHH
Q 047188 58 EPKKKERELASWEADLKRREKEIKRR 83 (271)
Q Consensus 58 ~l~~k~~eL~~kE~EL~~RE~el~~r 83 (271)
.|++.-+||++|=++|+++-+|+++|
T Consensus 23 aLk~E~~eLk~k~~~L~~~~~el~~~ 48 (53)
T 2yy0_A 23 LLRLELAEMKEKYEAIVEENKKLKAK 48 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555667777777777777777654
No 22
>1u2m_A Histone-like protein HLP-1; coiled coil, chaperone; 2.30A {Escherichia coli} SCOP: f.48.1.1 PDB: 1sg2_A
Probab=27.94 E-value=16 Score=28.79 Aligned_cols=15 Identities=7% Similarity=0.127 Sum_probs=8.3
Q ss_pred cceeccccc-cchhhH
Q 047188 104 PIIHHDISK-EIPIHA 118 (271)
Q Consensus 104 Pi~yhdI~~-eIP~~~ 118 (271)
-++|.|-.. ||-.+.
T Consensus 123 ~vly~~~~~~DIT~~V 138 (143)
T 1u2m_A 123 AVAYNSSDVKDITADV 138 (143)
T ss_dssp GEEEECTTSCBCHHHH
T ss_pred ceeEeCCCcCchHHHH
Confidence 456655555 665543
No 23
>1a93_A Coiled coil, LZ, MYC proto-oncogene protein; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Homo sapiens} SCOP: h.1.3.1 PDB: 2a93_A
Probab=27.58 E-value=90 Score=19.25 Aligned_cols=25 Identities=28% Similarity=0.453 Sum_probs=11.8
Q ss_pred chHhHHHhHHHHHHHHHHHHHHHHH
Q 047188 59 PKKKERELASWEADLKRREKEIKRR 83 (271)
Q Consensus 59 l~~k~~eL~~kE~EL~~RE~el~~r 83 (271)
+...|..|-.-.+.|++|.+.|.+|
T Consensus 5 lq~dE~kLl~ekE~l~~r~eqL~~k 29 (34)
T 1a93_A 5 VQAEEQKLISEEDLLRKRREQLKHK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555543333345555555554
No 24
>1k1f_A Breakpoint cluster region protein; oligomerization, coiled coil, BCR-ABL kinase, transferase; 2.20A {Homo sapiens} SCOP: a.147.1.1
Probab=27.22 E-value=1e+02 Score=21.90 Aligned_cols=25 Identities=28% Similarity=0.412 Sum_probs=17.1
Q ss_pred CchHhHHHhHHHHHHHHHHHHHHHH
Q 047188 58 EPKKKERELASWEADLKRREKEIKR 82 (271)
Q Consensus 58 ~l~~k~~eL~~kE~EL~~RE~el~~ 82 (271)
....-|+||++-.+-+++.|+|+.+
T Consensus 27 ~vgdiEqeLe~Ck~sIrrLE~evn~ 51 (72)
T 1k1f_A 27 SVGDIEQELERAKASIRRLEQEVNQ 51 (72)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhH
Confidence 4455677777777777777777753
No 25
>2ad6_B Methanol dehydrogenase subunit 2; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: a.137.2.1 PDB: 1g72_B* 2ad7_B* 2ad8_B* 4aah_B*
Probab=26.45 E-value=72 Score=22.55 Aligned_cols=29 Identities=21% Similarity=0.223 Sum_probs=17.7
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHhcC
Q 047188 63 ERELASWEADLKRREKEIKRREEAIVKAG 91 (271)
Q Consensus 63 ~~eL~~kE~EL~~RE~el~~re~~~~~~g 91 (271)
.+||.+.++.++..|+.-+.|-++.+..|
T Consensus 34 p~EL~KQ~~si~ame~RN~kRv~~fkkTG 62 (69)
T 2ad6_B 34 PVELNKQEESIKAMDARNAKRIANAKSSG 62 (69)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 34666666666666666556666665555
No 26
>1abz_A Alpha-T-alpha, ATA; de novo design, helix-turn-helix, peptide; HET: SIN; NMR {} SCOP: k.15.1.1
Probab=24.57 E-value=1e+02 Score=19.06 Aligned_cols=10 Identities=30% Similarity=0.584 Sum_probs=4.5
Q ss_pred HHHHHHHHHH
Q 047188 72 DLKRREKEIK 81 (271)
Q Consensus 72 EL~~RE~el~ 81 (271)
||+..|+.|+
T Consensus 25 elrameaklk 34 (40)
T 1abz_A 25 ELRAMEAKLK 34 (40)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4444444443
No 27
>3csx_A Putative uncharacterized protein; metalloprotein, nitrogen fixation, cyanobacteria, circadian rhythms, metal binding protein, unknown function; 1.84A {Cyanothece}
Probab=24.33 E-value=44 Score=24.63 Aligned_cols=15 Identities=27% Similarity=0.612 Sum_probs=6.7
Q ss_pred ccccccchhhHHHHH
Q 047188 108 HDISKEIPIHAQRLQ 122 (271)
Q Consensus 108 hdI~~eIP~~~q~~v 122 (271)
||+.+|+|...+++.
T Consensus 39 HDLaEdLP~~w~~i~ 53 (81)
T 3csx_A 39 HDLAEGLPTDYENLV 53 (81)
T ss_dssp HHHHHHTTTTGGGHH
T ss_pred HHHHccchhhHHHHH
Confidence 444444444444333
No 28
>3p01_A Two-component response regulator; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG, signali protein; 2.65A {Nostoc SP}
Probab=23.87 E-value=53 Score=25.62 Aligned_cols=19 Identities=21% Similarity=0.228 Sum_probs=13.2
Q ss_pred CCchHhHHHhHHHHHHHHH
Q 047188 57 NEPKKKERELASWEADLKR 75 (271)
Q Consensus 57 ~~l~~k~~eL~~kE~EL~~ 75 (271)
++++++.+||++++++++-
T Consensus 13 ~~l~~~~~~l~~~~~~~~~ 31 (184)
T 3p01_A 13 DLLKQRTEELRRANAQMSL 31 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4667777788777776654
No 29
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=23.70 E-value=1.3e+02 Score=22.31 Aligned_cols=15 Identities=27% Similarity=0.539 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHHH
Q 047188 72 DLKRREKEIKRREEA 86 (271)
Q Consensus 72 EL~~RE~el~~re~~ 86 (271)
||+...++|++-|++
T Consensus 52 el~~h~~ei~~le~~ 66 (84)
T 1gmj_A 52 EISHHAKEIERLQKE 66 (84)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333334433333
No 30
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=23.64 E-value=83 Score=27.46 Aligned_cols=28 Identities=29% Similarity=0.275 Sum_probs=18.8
Q ss_pred CCCchHhHHHhHHHHHHHHHHHHHHHHH
Q 047188 56 MNEPKKKERELASWEADLKRREKEIKRR 83 (271)
Q Consensus 56 ~~~l~~k~~eL~~kE~EL~~RE~el~~r 83 (271)
.++|+++-.+|+++..++++.++|.+|-
T Consensus 28 N~~Lk~e~~~l~~~~~~~~~l~~En~rL 55 (255)
T 2j5u_A 28 NQHLKERLEELAQLESEVADLKKENKDL 55 (255)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466667677777777777766666553
No 31
>1a92_A Delta antigen; leucine zipper, coiled-coil, oligomerization; 1.80A {Hepatitis delta virus} SCOP: h.4.6.1 PDB: 1by0_A
Probab=23.01 E-value=76 Score=21.14 Aligned_cols=16 Identities=50% Similarity=0.738 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 047188 70 EADLKRREKEIKRREE 85 (271)
Q Consensus 70 E~EL~~RE~el~~re~ 85 (271)
|++|++-...+++-|+
T Consensus 20 er~lrk~kk~iKklEd 35 (50)
T 1a92_A 20 ERDLRKLKKKIKKLEE 35 (50)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhc
Confidence 3444443334444443
No 32
>1w6s_B Methanol dehydrogenase subunit 2; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: a.137.2.1 PDB: 1h4j_B* 1h4i_B* 2d0v_B*
Probab=22.60 E-value=92 Score=22.27 Aligned_cols=29 Identities=31% Similarity=0.426 Sum_probs=18.2
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHhcC
Q 047188 63 ERELASWEADLKRREKEIKRREEAIVKAG 91 (271)
Q Consensus 63 ~~eL~~kE~EL~~RE~el~~re~~~~~~g 91 (271)
.+||.+.++.++..|+.-+.|-++.+..|
T Consensus 34 p~EL~KQ~~si~ame~RN~kRv~~fkkTG 62 (74)
T 1w6s_B 34 PKELNKQADSIKQMEERNKKRVENFKKTG 62 (74)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 44666666666666666666666666655
No 33
>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1
Probab=22.21 E-value=1e+02 Score=25.36 Aligned_cols=18 Identities=6% Similarity=0.163 Sum_probs=10.1
Q ss_pred hHhHHHhHHHHHHHHHHH
Q 047188 60 KKKERELASWEADLKRRE 77 (271)
Q Consensus 60 ~~k~~eL~~kE~EL~~RE 77 (271)
.++.+++++|.++|++.+
T Consensus 15 ~~~~~rI~~K~~~LqeL~ 32 (155)
T 2aze_A 15 QRRLERIKQKQSQLQELI 32 (155)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345556666666665543
No 34
>2lq4_p Lysophosphatidic acid receptor 1; GPCR, G protein-coupled receptor, de novo protein; NMR {Artificial gene}
Probab=22.11 E-value=23 Score=25.03 Aligned_cols=26 Identities=38% Similarity=0.469 Sum_probs=14.8
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHH
Q 047188 63 ERELASWEADLKRREKEIKRREEAIV 88 (271)
Q Consensus 63 ~~eL~~kE~EL~~RE~el~~re~~~~ 88 (271)
++||..-|=||+..|.||.+-|.++.
T Consensus 5 ekelaqnewelqalekelaqlekelq 30 (80)
T 2lq4_p 5 EKELAQNEWELQALEKELAQLEKELQ 30 (80)
T ss_dssp HHHHSSSSTTTHHHHTTHHHHHHHHT
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 44555555556666666666555543
No 35
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=21.94 E-value=51 Score=20.34 Aligned_cols=18 Identities=22% Similarity=0.187 Sum_probs=10.2
Q ss_pred CchHhHHHhHHHHHHHHH
Q 047188 58 EPKKKERELASWEADLKR 75 (271)
Q Consensus 58 ~l~~k~~eL~~kE~EL~~ 75 (271)
.|..|-+||-.+..||+.
T Consensus 5 QLE~kVEeLl~~n~~Le~ 22 (34)
T 2oxj_A 5 QLEXKVXELLXKNXHLEX 22 (34)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHH
Confidence 455566666655555544
No 36
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=21.61 E-value=1.4e+02 Score=17.77 Aligned_cols=26 Identities=31% Similarity=0.351 Sum_probs=16.1
Q ss_pred hHhHHHhHHHHHHHHHHHHHHHHHHH
Q 047188 60 KKKERELASWEADLKRREKEIKRREE 85 (271)
Q Consensus 60 ~~k~~eL~~kE~EL~~RE~el~~re~ 85 (271)
..-++|..+.|+|--..|+|..+-|.
T Consensus 4 aqlekevaqaeaenyqleqevaqleh 29 (33)
T 1fmh_A 4 AQLEKEVAQAEAENYQLEQEVAQLEH 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 34556666666666667777665543
No 37
>2q2f_A Selenoprotein S; anti-parallel coiled-coil, endoplasmic reticulum, membrane, selenocysteine, transmembrane, structural genomics; HET: MSE; 1.50A {Homo sapiens}
Probab=21.42 E-value=1.5e+02 Score=22.13 Aligned_cols=15 Identities=27% Similarity=0.222 Sum_probs=7.5
Q ss_pred HhHHHhHHHHHHHHH
Q 047188 61 KKERELASWEADLKR 75 (271)
Q Consensus 61 ~k~~eL~~kE~EL~~ 75 (271)
+.|+||+++.++-+.
T Consensus 55 RMQEeldAqAe~~ke 69 (89)
T 2q2f_A 55 KMQEELNAQVEKHKE 69 (89)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 345555555554433
No 38
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=20.60 E-value=1.2e+02 Score=23.51 Aligned_cols=28 Identities=11% Similarity=0.176 Sum_probs=17.0
Q ss_pred chHhHHHhHHHHHHHHHHHHHHHHHHHH
Q 047188 59 PKKKERELASWEADLKRREKEIKRREEA 86 (271)
Q Consensus 59 l~~k~~eL~~kE~EL~~RE~el~~re~~ 86 (271)
|...++-|.+|..+.++.++++.+++.+
T Consensus 33 L~~AEeaL~~Kq~~idelk~ei~q~~~~ 60 (110)
T 2v4h_A 33 LQQAEEALVAKQELIDKLKEEAEQHKIV 60 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666777766666666655543
No 39
>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1
Probab=20.56 E-value=1.3e+02 Score=24.75 Aligned_cols=24 Identities=17% Similarity=0.232 Sum_probs=13.5
Q ss_pred CchHhHHHhHHHHHHHHHHHHHHH
Q 047188 58 EPKKKERELASWEADLKRREKEIK 81 (271)
Q Consensus 58 ~l~~k~~eL~~kE~EL~~RE~el~ 81 (271)
|.++-++|-.++.++++++.++|+
T Consensus 6 e~~~Le~Ek~~~~~rI~~K~~~Lq 29 (155)
T 2aze_A 6 ECQNLEVERQRRLERIKQKQSQLQ 29 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555556666666666555
No 40
>3sw1_A Sensory box protein; light-oxygen-voltage, LOV, PAS, signaling protein; HET: FMN; 2.63A {Pseudomonas putida}
Probab=20.48 E-value=32 Score=25.25 Aligned_cols=20 Identities=20% Similarity=0.157 Sum_probs=8.2
Q ss_pred HhHHHHHHHHHHHHHHHHHH
Q 047188 65 ELASWEADLKRREKEIKRRE 84 (271)
Q Consensus 65 eL~~kE~EL~~RE~el~~re 84 (271)
|.++.|++|++.+++|++.+
T Consensus 141 e~k~~e~~l~~~~~~l~~~~ 160 (162)
T 3sw1_A 141 RQVELERELAELRARPKPDE 160 (162)
T ss_dssp HHHHHHHHHHHHTC------
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 33455666666666665433
Done!