BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047190
(1025 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 150 bits (380), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 179/669 (26%), Positives = 261/669 (39%), Gaps = 112/669 (16%)
Query: 240 SLEVIDLSNNYLTNS-IYPWLFNVSSNLVDHIDLGSNQLHGSIPLAFGHMASLRHLDLLS 298
SLEV+DLS N ++ + + W+ + + H+ + N++ G + ++ +L LD+ S
Sbjct: 149 SLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVS--RCVNLEFLDVSS 206
Query: 299 NQLREVPKFLGNMSSLKRLVFSYNELRGELSEFIQNVSSGSTKNSSLEWLYLAFNEITGT 358
N FLG+ S+L+ L S N+L G+ S I + L+ L ++ N+ G
Sbjct: 207 NNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTE-------LKLLNISSNQFVGP 259
Query: 359 IPDLGGFPSLQILSLENNRLTGTISKSIGQXXXXXXXXXXXXXXRGVISEALFSNLSSLD 418
IP L SLQ LSL N+ T G I + L +L
Sbjct: 260 IPPLP-LKSLQYLSLAENKFT------------------------GEIPDFLSGACDTLT 294
Query: 419 TLQLSDNSLTLKFSHDWTPPF-----------QLFNIFLGSCKIGPRFPKWLQSQNQTVA 467
L LS N + PPF N F G + L
Sbjct: 295 GLDLSGNHF-----YGAVPPFFGSCSLLESLALSSNNFSGELPM-----DTLLKMRGLKV 344
Query: 468 LDVSNAGISDIVPDWFWDLTNQLYYLNLSNNEMKGK-LPDLSRKFDSYGPGIDVSSNQFD 526
LD+S S +P+ +L+ L L+LS+N G LP+L + + + + +N F
Sbjct: 345 LDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFT 404
Query: 527 GPIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRLPDCWFQFDSLA 586
G I G +P L
Sbjct: 405 GKIPPTLSNCSELVSLHLSFNYLS----------------------GTIPSSLGSLSKLR 442
Query: 587 ILNLANNSFFGEIPDSMSFLRSIXXXXXXXXXXXXXXPSFFMNGSQLTLMDLGKNGLSGE 646
L L N GEIP + +++++ PS N + L + L N L+GE
Sbjct: 443 DLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGE 502
Query: 647 IPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIP--------K 698
IP WIG L NL +L L +N F GNIP +L + LDL+ N +G IP K
Sbjct: 503 IPKWIGR-LENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGK 561
Query: 699 CFHNFTA-----------MTKEKXXXXXXXXXXXXXXGLRGMLM-------PLIFFDTWK 740
NF A M KE G+R + P
Sbjct: 562 IAANFIAGKRYVYIKNDGMKKE----CHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVY 617
Query: 741 GGQYEYK-SILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPRIGQLK 799
GG G + +D+S N L G + +EI + L LNL +N+++G I +G L+
Sbjct: 618 GGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLR 677
Query: 800 SLDFLDLSRNHFFGGIPXXXXXXXXXXVMDLSYNNFSGKIPKGTQLQRFGASTYAGNPEL 859
L+ LDLS N G IP +DLS NN SG IP+ Q + F + + NP L
Sbjct: 678 GLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGL 737
Query: 860 CGLPLPNKC 868
CG PLP +C
Sbjct: 738 CGYPLP-RC 745
Score = 92.8 bits (229), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 132/455 (29%), Positives = 194/455 (42%), Gaps = 46/455 (10%)
Query: 102 GTINPSLLKLQHLTYLDLSWNNFSGSPIPEFI-GSLGKLSELALSSAQFAGPIPHQLGNL 160
G I P L L+ L YL L+ N F+G IP+F+ G+ L+ L LS F G +P G+
Sbjct: 258 GPIPP--LPLKSLQYLSLAENKFTGE-IPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSC 314
Query: 161 SKLQVLDLRFNNLFSSGNXXXXXXXXXXXXXXXADCKLSKFSNWV-QVLSNLR-SLTNLY 218
S L+ L L NN SG D ++FS + + L+NL SL L
Sbjct: 315 SLLESLALSSNNF--SGELPMDTLLKMRGLKVL-DLSFNEFSGELPESLTNLSASLLTLD 371
Query: 219 LGYCDLPPISTPSLLHINYSKSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLH 278
L + P+L N +L+ + L NN T I P L N S + H+ N L
Sbjct: 372 LSSNNFSGPILPNLCQ-NPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSF--NYLS 428
Query: 279 GSIPLAFGHMASLRHLDLLSNQLR-EVPKFLGNMSSLKRLVFSYNELRGELSEFIQNVSS 337
G+IP + G ++ LR L L N L E+P+ L + +L+ L+ +N+L GE + S
Sbjct: 429 GTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGE-------IPS 481
Query: 338 GSTKNSSLEWLYLAFNEITGTIPD-LGGFPSLQILSLENNRLTGTISKSIGQXXXXXXXX 396
G + ++L W+ L+ N +TG IP +G +L IL L NN +G I +G
Sbjct: 482 GLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLD 541
Query: 397 XXXXXXRGVISEALF-------SNLSSLDTLQLSDNSLTLKFSHDWTPPFQLFNI----- 444
G I A+F +N + N K H + I
Sbjct: 542 LNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQL 601
Query: 445 ----FLGSCKIGPRF-----PKWLQSQNQTVALDVSNAGISDIVPDWFWDLTNQLYYLNL 495
C I R + + LD+S +S +P + L+ LNL
Sbjct: 602 NRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMP-YLFILNL 660
Query: 496 SNNEMKGKLPDLSRKFDSYGPGI-DVSSNQFDGPI 529
+N++ G +PD D G I D+SSN+ DG I
Sbjct: 661 GHNDISGSIPD--EVGDLRGLNILDLSSNKLDGRI 693
Score = 87.0 bits (214), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 120/425 (28%), Positives = 182/425 (42%), Gaps = 45/425 (10%)
Query: 109 LKLQHLTYLDLSWNNFSGSPIPEFIGS--LGKLSELALSSAQFAGPIPHQLGNLSKLQVL 166
LKL L LDLS N+ SG+ + ++ S G+L LA+S + +G + + L+ L
Sbjct: 145 LKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDV--DVSRCVNLEFL 202
Query: 167 DLRFNNLFSSGNXXXXXXXXXXXXXXXADCKLSKFSNWVQVLSNLRSL---TNLYLGYCD 223
D+ NN FS+G + FS + + L+ L +N ++G
Sbjct: 203 DVSSNN-FSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVG--P 259
Query: 224 LPPISTPSLLHINYSKSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLHGSIPL 283
+PP+ KSL+ + L+ N T I P + + + + +DL N +G++P
Sbjct: 260 IPPLPL---------KSLQYLSLAENKFTGEI-PDFLSGACDTLTGLDLSGNHFYGAVPP 309
Query: 284 AFGHMASLRHLDLLSNQLR-EVP-KFLGNMSSLKRLVFSYNELRGELSEFIQNVSSG--- 338
FG + L L L SN E+P L M LK L S+NE GEL E + N+S+
Sbjct: 310 FFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLT 369
Query: 339 ---STKN--------------SSLEWLYLAFNEITGTI-PDLGGFPSLQILSLENNRLTG 380
S+ N ++L+ LYL N TG I P L L L L N L+G
Sbjct: 370 LDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSG 429
Query: 381 TISKSIGQXXXXXXXXXXXXXXRGVISEALFSNLSSLDTLQLSDNSLTLKFSHDWTPPFQ 440
TI S+G G I + L + +L+TL L N LT + +
Sbjct: 430 TIPSSLGSLSKLRDLKLWLNMLEGEIPQELMY-VKTLETLILDFNDLTGEIPSGLSNCTN 488
Query: 441 LFNIFLGSCKIGPRFPKWLQSQNQTVALDVSNAGISDIVPDWFWDLTNQLYYLNLSNNEM 500
L I L + ++ PKW+ L +SN S +P D L +L+L+ N
Sbjct: 489 LNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGD-CRSLIWLDLNTNLF 547
Query: 501 KGKLP 505
G +P
Sbjct: 548 NGTIP 552
Score = 85.5 bits (210), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 152/599 (25%), Positives = 232/599 (38%), Gaps = 125/599 (20%)
Query: 272 LGSNQLHGSIPLAFGHMASLRHLDLLSNQLR---EVPKFLGNMSSLKRLVFSYNELRGEL 328
L ++ ++GS+ F ASL LDL N L LG+ S LK L S N L
Sbjct: 81 LSNSHINGSVS-GFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTL---- 135
Query: 329 SEFIQNVSSGSTKNSSLEWLYLAFNEITGT------IPDLGGFPSLQILSLENNRLTGTI 382
+F VS G K +SLE L L+ N I+G + D G L+ L++ N+++G +
Sbjct: 136 -DFPGKVSGG-LKLNSLEVLDLSANSISGANVVGWVLSD--GCGELKHLAISGNKISGDV 191
Query: 383 SKSIGQXXXXXXXXXXXXXXRGVISEALFSNLSSLDTLQLSDNSLTLKFSHDWTPPFQLF 442
S G+ + S+L L +S N L+ FS + +L
Sbjct: 192 DVSR-CVNLEFLDVSSNNFSTGI---PFLGDCSALQHLDISGNKLSGDFSRAISTCTELK 247
Query: 443 NIFLGSCK-IGPRFPKWLQSQNQTVALDVSNAGISDIVPDWFWDLTNQLYYLNLSNNEMK 501
+ + S + +GP P L+S L YL+L+ N+
Sbjct: 248 LLNISSNQFVGPIPPLPLKS----------------------------LQYLSLAENKFT 279
Query: 502 GKLPD-LSRKFDSYGPGIDVSSNQFDGPIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 560
G++PD LS D+ G+D+S N F G +
Sbjct: 280 GEIPDFLSGACDTL-TGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFS---------- 328
Query: 561 XXXXXXXXXXXXGRLP-DCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIXXXXXXXXXX 619
G LP D + L +L+L+ N F GE+P+S++ L +
Sbjct: 329 ------------GELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSA----------- 365
Query: 620 XXXXPSFFMNGSQLTLMDLGKNGLSGEI-PTWIGESLPNLVVLSLRSNKFHGNIPFQLCY 678
L +DL N SG I P L L L++N F G IP L
Sbjct: 366 ------------SLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSN 413
Query: 679 LSHIQILDLSLNNISGIIPKCFHNFTAMTKEKXXXXXXXXXXXXXXGLRGMLMPLIFFDT 738
S + L LS N +SG IP + + + K ++ +
Sbjct: 414 CSELVSLHLSFNYLSGTIPSSLGSLSKLRDLK-----------------------LWLNM 450
Query: 739 WKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPRIGQL 798
+G + + ++ + L N L G++ + + L ++LSNN LTG+I IG+L
Sbjct: 451 LEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRL 510
Query: 799 KSLDFLDLSRNHFFGGIPXXXXXXXXXXVMDLSYNNFSGKIPKG--TQLQRFGASTYAG 855
++L L LS N F G IP +DL+ N F+G IP Q + A+ AG
Sbjct: 511 ENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAG 569
Score = 54.3 bits (129), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 67/257 (26%), Positives = 107/257 (41%), Gaps = 32/257 (12%)
Query: 100 LKGTINPSLLKLQHLTYLDLSWNNFSGSPIPEFIGSLGKLSELALSSAQFAGPIPHQLGN 159
L G I L +L ++ LS N +G IP++IG L L+ L LS+ F+G IP +LG+
Sbjct: 475 LTGEIPSGLSNCTNLNWISLSNNRLTGE-IPKWIGRLENLAILKLSNNSFSGNIPAELGD 533
Query: 160 LSKLQVLDLRFN--------NLFSSGNXXXXXXXXXXXXXXXADCKLSKFSNWVQVLSNL 211
L LDL N +F + + K + L
Sbjct: 534 CRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEF 593
Query: 212 RSLTNLYLGYCDLP-PISTPSLLHINYSK-------SLEVIDLSNNYLTNSI------YP 257
+ + + L P + S ++ ++ S+ +D+S N L+ I P
Sbjct: 594 QGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMP 653
Query: 258 WLFNVSSNLVDHIDLGSNQLHGSIPLAFGHMASLRHLDLLSNQLR-EVPKFLGNMSSLKR 316
+LF ++LG N + GSIP G + L LDL SN+L +P+ + ++ L
Sbjct: 654 YLF--------ILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTE 705
Query: 317 LVFSYNELRGELSEFIQ 333
+ S N L G + E Q
Sbjct: 706 IDLSNNNLSGPIPEMGQ 722
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 94 DSPVDALKGTINPSLLKLQHLTYLDLSWNNFSGSPIPEFIGSLGKLSELALSSAQFAGPI 153
D + L G I + + +L L+L N+ SGS IP+ +G L L+ L LSS + G I
Sbjct: 635 DMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGS-IPDEVGDLRGLNILDLSSNKLDGRI 693
Query: 154 PHQLGNLSKLQVLDLRFNNL 173
P + L+ L +DL NNL
Sbjct: 694 PQAMSALTMLTEIDLSNNNL 713
Score = 29.6 bits (65), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 79 NKTGHVLGLDLRASSDSPVDALKGTINPSLLKLQHLTYLDLSWNNFSGSPIPEF 132
++ G + GL++ S + +D G I ++ L LT +DLS NN SG PIPE
Sbjct: 671 DEVGDLRGLNILDLSSNKLD---GRIPQAMSALTMLTEIDLSNNNLSG-PIPEM 720
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 150 bits (380), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 179/669 (26%), Positives = 261/669 (39%), Gaps = 112/669 (16%)
Query: 240 SLEVIDLSNNYLTNS-IYPWLFNVSSNLVDHIDLGSNQLHGSIPLAFGHMASLRHLDLLS 298
SLEV+DLS N ++ + + W+ + + H+ + N++ G + ++ +L LD+ S
Sbjct: 152 SLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVS--RCVNLEFLDVSS 209
Query: 299 NQLREVPKFLGNMSSLKRLVFSYNELRGELSEFIQNVSSGSTKNSSLEWLYLAFNEITGT 358
N FLG+ S+L+ L S N+L G+ S I + L+ L ++ N+ G
Sbjct: 210 NNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTE-------LKLLNISSNQFVGP 262
Query: 359 IPDLGGFPSLQILSLENNRLTGTISKSIGQXXXXXXXXXXXXXXRGVISEALFSNLSSLD 418
IP L SLQ LSL N+ T G I + L +L
Sbjct: 263 IPPLP-LKSLQYLSLAENKFT------------------------GEIPDFLSGACDTLT 297
Query: 419 TLQLSDNSLTLKFSHDWTPPF-----------QLFNIFLGSCKIGPRFPKWLQSQNQTVA 467
L LS N + PPF N F G + L
Sbjct: 298 GLDLSGNHF-----YGAVPPFFGSCSLLESLALSSNNFSGELPM-----DTLLKMRGLKV 347
Query: 468 LDVSNAGISDIVPDWFWDLTNQLYYLNLSNNEMKGK-LPDLSRKFDSYGPGIDVSSNQFD 526
LD+S S +P+ +L+ L L+LS+N G LP+L + + + + +N F
Sbjct: 348 LDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFT 407
Query: 527 GPIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRLPDCWFQFDSLA 586
G I G +P L
Sbjct: 408 GKIPPTLSNCSELVSLHLSFNYLS----------------------GTIPSSLGSLSKLR 445
Query: 587 ILNLANNSFFGEIPDSMSFLRSIXXXXXXXXXXXXXXPSFFMNGSQLTLMDLGKNGLSGE 646
L L N GEIP + +++++ PS N + L + L N L+GE
Sbjct: 446 DLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGE 505
Query: 647 IPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIP--------K 698
IP WIG L NL +L L +N F GNIP +L + LDL+ N +G IP K
Sbjct: 506 IPKWIGR-LENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGK 564
Query: 699 CFHNFTA-----------MTKEKXXXXXXXXXXXXXXGLRGMLM-------PLIFFDTWK 740
NF A M KE G+R + P
Sbjct: 565 IAANFIAGKRYVYIKNDGMKKE----CHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVY 620
Query: 741 GGQYEYK-SILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPRIGQLK 799
GG G + +D+S N L G + +EI + L LNL +N+++G I +G L+
Sbjct: 621 GGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLR 680
Query: 800 SLDFLDLSRNHFFGGIPXXXXXXXXXXVMDLSYNNFSGKIPKGTQLQRFGASTYAGNPEL 859
L+ LDLS N G IP +DLS NN SG IP+ Q + F + + NP L
Sbjct: 681 GLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGL 740
Query: 860 CGLPLPNKC 868
CG PLP +C
Sbjct: 741 CGYPLP-RC 748
Score = 92.4 bits (228), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 132/455 (29%), Positives = 194/455 (42%), Gaps = 46/455 (10%)
Query: 102 GTINPSLLKLQHLTYLDLSWNNFSGSPIPEFI-GSLGKLSELALSSAQFAGPIPHQLGNL 160
G I P L L+ L YL L+ N F+G IP+F+ G+ L+ L LS F G +P G+
Sbjct: 261 GPIPP--LPLKSLQYLSLAENKFTGE-IPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSC 317
Query: 161 SKLQVLDLRFNNLFSSGNXXXXXXXXXXXXXXXADCKLSKFSNWV-QVLSNLR-SLTNLY 218
S L+ L L NN SG D ++FS + + L+NL SL L
Sbjct: 318 SLLESLALSSNNF--SGELPMDTLLKMRGLKVL-DLSFNEFSGELPESLTNLSASLLTLD 374
Query: 219 LGYCDLPPISTPSLLHINYSKSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLH 278
L + P+L N +L+ + L NN T I P L N S + H+ N L
Sbjct: 375 LSSNNFSGPILPNLCQ-NPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSF--NYLS 431
Query: 279 GSIPLAFGHMASLRHLDLLSNQLR-EVPKFLGNMSSLKRLVFSYNELRGELSEFIQNVSS 337
G+IP + G ++ LR L L N L E+P+ L + +L+ L+ +N+L GE + S
Sbjct: 432 GTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGE-------IPS 484
Query: 338 GSTKNSSLEWLYLAFNEITGTIPD-LGGFPSLQILSLENNRLTGTISKSIGQXXXXXXXX 396
G + ++L W+ L+ N +TG IP +G +L IL L NN +G I +G
Sbjct: 485 GLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLD 544
Query: 397 XXXXXXRGVISEALF-------SNLSSLDTLQLSDNSLTLKFSHDWTPPFQLFNI----- 444
G I A+F +N + N K H + I
Sbjct: 545 LNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQL 604
Query: 445 ----FLGSCKIGPRF-----PKWLQSQNQTVALDVSNAGISDIVPDWFWDLTNQLYYLNL 495
C I R + + LD+S +S +P + L+ LNL
Sbjct: 605 NRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMP-YLFILNL 663
Query: 496 SNNEMKGKLPDLSRKFDSYGPGI-DVSSNQFDGPI 529
+N++ G +PD D G I D+SSN+ DG I
Sbjct: 664 GHNDISGSIPD--EVGDLRGLNILDLSSNKLDGRI 696
Score = 87.0 bits (214), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 120/425 (28%), Positives = 182/425 (42%), Gaps = 45/425 (10%)
Query: 109 LKLQHLTYLDLSWNNFSGSPIPEFIGS--LGKLSELALSSAQFAGPIPHQLGNLSKLQVL 166
LKL L LDLS N+ SG+ + ++ S G+L LA+S + +G + + L+ L
Sbjct: 148 LKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDV--DVSRCVNLEFL 205
Query: 167 DLRFNNLFSSGNXXXXXXXXXXXXXXXADCKLSKFSNWVQVLSNLRSL---TNLYLGYCD 223
D+ NN FS+G + FS + + L+ L +N ++G
Sbjct: 206 DVSSNN-FSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVG--P 262
Query: 224 LPPISTPSLLHINYSKSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLHGSIPL 283
+PP+ KSL+ + L+ N T I P + + + + +DL N +G++P
Sbjct: 263 IPPLPL---------KSLQYLSLAENKFTGEI-PDFLSGACDTLTGLDLSGNHFYGAVPP 312
Query: 284 AFGHMASLRHLDLLSNQLR-EVP-KFLGNMSSLKRLVFSYNELRGELSEFIQNVSSG--- 338
FG + L L L SN E+P L M LK L S+NE GEL E + N+S+
Sbjct: 313 FFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLT 372
Query: 339 ---STKN--------------SSLEWLYLAFNEITGTI-PDLGGFPSLQILSLENNRLTG 380
S+ N ++L+ LYL N TG I P L L L L N L+G
Sbjct: 373 LDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSG 432
Query: 381 TISKSIGQXXXXXXXXXXXXXXRGVISEALFSNLSSLDTLQLSDNSLTLKFSHDWTPPFQ 440
TI S+G G I + L + +L+TL L N LT + +
Sbjct: 433 TIPSSLGSLSKLRDLKLWLNMLEGEIPQELMY-VKTLETLILDFNDLTGEIPSGLSNCTN 491
Query: 441 LFNIFLGSCKIGPRFPKWLQSQNQTVALDVSNAGISDIVPDWFWDLTNQLYYLNLSNNEM 500
L I L + ++ PKW+ L +SN S +P D L +L+L+ N
Sbjct: 492 LNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGD-CRSLIWLDLNTNLF 550
Query: 501 KGKLP 505
G +P
Sbjct: 551 NGTIP 555
Score = 85.1 bits (209), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 152/599 (25%), Positives = 232/599 (38%), Gaps = 125/599 (20%)
Query: 272 LGSNQLHGSIPLAFGHMASLRHLDLLSNQLR---EVPKFLGNMSSLKRLVFSYNELRGEL 328
L ++ ++GS+ F ASL LDL N L LG+ S LK L S N L
Sbjct: 84 LSNSHINGSVS-GFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTL---- 138
Query: 329 SEFIQNVSSGSTKNSSLEWLYLAFNEITGT------IPDLGGFPSLQILSLENNRLTGTI 382
+F VS G K +SLE L L+ N I+G + D G L+ L++ N+++G +
Sbjct: 139 -DFPGKVSGG-LKLNSLEVLDLSANSISGANVVGWVLSD--GCGELKHLAISGNKISGDV 194
Query: 383 SKSIGQXXXXXXXXXXXXXXRGVISEALFSNLSSLDTLQLSDNSLTLKFSHDWTPPFQLF 442
S G+ + S+L L +S N L+ FS + +L
Sbjct: 195 DVS-RCVNLEFLDVSSNNFSTGI---PFLGDCSALQHLDISGNKLSGDFSRAISTCTELK 250
Query: 443 NIFLGSCK-IGPRFPKWLQSQNQTVALDVSNAGISDIVPDWFWDLTNQLYYLNLSNNEMK 501
+ + S + +GP P L+S L YL+L+ N+
Sbjct: 251 LLNISSNQFVGPIPPLPLKS----------------------------LQYLSLAENKFT 282
Query: 502 GKLPD-LSRKFDSYGPGIDVSSNQFDGPIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 560
G++PD LS D+ G+D+S N F G +
Sbjct: 283 GEIPDFLSGACDTL-TGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFS---------- 331
Query: 561 XXXXXXXXXXXXGRLP-DCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIXXXXXXXXXX 619
G LP D + L +L+L+ N F GE+P+S++ L +
Sbjct: 332 ------------GELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSA----------- 368
Query: 620 XXXXPSFFMNGSQLTLMDLGKNGLSGEI-PTWIGESLPNLVVLSLRSNKFHGNIPFQLCY 678
L +DL N SG I P L L L++N F G IP L
Sbjct: 369 ------------SLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSN 416
Query: 679 LSHIQILDLSLNNISGIIPKCFHNFTAMTKEKXXXXXXXXXXXXXXGLRGMLMPLIFFDT 738
S + L LS N +SG IP + + + K ++ +
Sbjct: 417 CSELVSLHLSFNYLSGTIPSSLGSLSKLRDLK-----------------------LWLNM 453
Query: 739 WKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPRIGQL 798
+G + + ++ + L N L G++ + + L ++LSNN LTG+I IG+L
Sbjct: 454 LEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRL 513
Query: 799 KSLDFLDLSRNHFFGGIPXXXXXXXXXXVMDLSYNNFSGKIPKG--TQLQRFGASTYAG 855
++L L LS N F G IP +DL+ N F+G IP Q + A+ AG
Sbjct: 514 ENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAG 572
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 67/257 (26%), Positives = 107/257 (41%), Gaps = 32/257 (12%)
Query: 100 LKGTINPSLLKLQHLTYLDLSWNNFSGSPIPEFIGSLGKLSELALSSAQFAGPIPHQLGN 159
L G I L +L ++ LS N +G IP++IG L L+ L LS+ F+G IP +LG+
Sbjct: 478 LTGEIPSGLSNCTNLNWISLSNNRLTGE-IPKWIGRLENLAILKLSNNSFSGNIPAELGD 536
Query: 160 LSKLQVLDLRFN--------NLFSSGNXXXXXXXXXXXXXXXADCKLSKFSNWVQVLSNL 211
L LDL N +F + + K + L
Sbjct: 537 CRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEF 596
Query: 212 RSLTNLYLGYCDLP-PISTPSLLHINYSK-------SLEVIDLSNNYLTNSI------YP 257
+ + + L P + S ++ ++ S+ +D+S N L+ I P
Sbjct: 597 QGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMP 656
Query: 258 WLFNVSSNLVDHIDLGSNQLHGSIPLAFGHMASLRHLDLLSNQLR-EVPKFLGNMSSLKR 316
+LF ++LG N + GSIP G + L LDL SN+L +P+ + ++ L
Sbjct: 657 YLF--------ILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTE 708
Query: 317 LVFSYNELRGELSEFIQ 333
+ S N L G + E Q
Sbjct: 709 IDLSNNNLSGPIPEMGQ 725
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 94 DSPVDALKGTINPSLLKLQHLTYLDLSWNNFSGSPIPEFIGSLGKLSELALSSAQFAGPI 153
D + L G I + + +L L+L N+ SGS IP+ +G L L+ L LSS + G I
Sbjct: 638 DMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGS-IPDEVGDLRGLNILDLSSNKLDGRI 696
Query: 154 PHQLGNLSKLQVLDLRFNNL 173
P + L+ L +DL NNL
Sbjct: 697 PQAMSALTMLTEIDLSNNNL 716
Score = 29.6 bits (65), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 79 NKTGHVLGLDLRASSDSPVDALKGTINPSLLKLQHLTYLDLSWNNFSGSPIPEF 132
++ G + GL++ S + +D G I ++ L LT +DLS NN SG PIPE
Sbjct: 674 DEVGDLRGLNILDLSSNKLD---GRIPQAMSALTMLTEIDLSNNNLSG-PIPEM 723
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 84.0 bits (206), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 72/274 (26%), Positives = 106/274 (38%), Gaps = 51/274 (18%)
Query: 593 NSFFGEIPDSMSFLRSIXXXXXXXXXXXXXXPSFFMNGSQLTLMDLGKNGLSGEIPTWIG 652
N+ G IP +++ L + P F L +D N LSG +P I
Sbjct: 87 NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSI- 145
Query: 653 ESLPNLVVLSLRSNKFHGNIPFQLCYLSHI-QILDLSLNNISGIIPKCFHNFTAMTKEKX 711
SLPNLV ++ N+ G IP S + + +S N ++G IP F N
Sbjct: 146 SSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN------- 198
Query: 712 XXXXXXXXXXXXXGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEI 771
+ +DLS N L G
Sbjct: 199 -----------------------------------------LAFVDLSRNMLEGDASVLF 217
Query: 772 MDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSRNHFFGGIPXXXXXXXXXXVMDLS 831
++L+ N+L + ++G K+L+ LDL N +G +P +++S
Sbjct: 218 GSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVS 276
Query: 832 YNNFSGKIPKGTQLQRFGASTYAGNPELCGLPLP 865
+NN G+IP+G LQRF S YA N LCG PLP
Sbjct: 277 FNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP 310
Score = 60.5 bits (145), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 89/350 (25%), Positives = 136/350 (38%), Gaps = 57/350 (16%)
Query: 35 CLDEEKESLLAFKQGLIDESGILSSWGREDEKRNCCK--WRGVRCSN--KTGHVLGLDLR 90
C ++K++LL K+ L + + LSSW + CC W GV C +T V LDL
Sbjct: 3 CNPQDKQALLQIKKDLGNPT-TLSSWLPTTD---CCNRTWLGVLCDTDTQTYRVNNLDLS 58
Query: 91 A---SSDSPVDALKGTINPSLLKLQHLTYLDLSWNNFSGSPIPEFIGSLGKLSELALSSA 147
P+ + SL L +L +L + N PIP I L +L L ++
Sbjct: 59 GLNLPKPYPIPS-------SLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT 111
Query: 148 QFAGPIPHQLGNLSKLQVLDLRFNNLFSSGNXXXXXXXXXXXXXXXADCKLSKFSNWVQV 207
+G IP L + L LD +N L SG +S N V +
Sbjct: 112 NVSGAIPDFLSQIKTLVTLDFSYNAL--SGTLPP---------------SISSLPNLVGI 154
Query: 208 LSNLRSLTNLYLGYCDLPPISTPSLLHINYSKSLEVIDLSNNYLTNSIYPWLFNVSSNLV 267
+ ++ P S S +SK + +S N LT I P N++ +
Sbjct: 155 TFDGNRISGAI-------PDSYGS-----FSKLFTSMTISRNRLTGKIPPTFANLN---L 199
Query: 268 DHIDLGSNQLHGSIPLAFGHMASLRHLDLLSNQLREVPKFLGNMSSLKRLVFSYNELRGE 327
+DL N L G + FG + + + L N L +G +L L N + G
Sbjct: 200 AFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGT 259
Query: 328 LSEFIQNVSSGSTKNSSLEWLYLAFNEITGTIPDLGGFPSLQILSLENNR 377
L + G T+ L L ++FN + G IP G + + NN+
Sbjct: 260 LPQ-------GLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNK 302
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 54/113 (47%), Gaps = 10/113 (8%)
Query: 273 GSNQLHGSIPLAFGHMASLRHLDLL-SNQLREVPKFLGNMSSLKRLVFSYNELRGELSEF 331
G N L G IP A + L +L + +N +P FL + +L L FSYN L G L
Sbjct: 85 GINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPS 144
Query: 332 IQNVSSGSTKNSSLEWLYLAFNEITGTIPD-LGGFPSL-QILSLENNRLTGTI 382
I ++ +L + N I+G IPD G F L +++ NRLTG I
Sbjct: 145 ISSL-------PNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKI 190
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 79/152 (51%), Gaps = 12/152 (7%)
Query: 239 KSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLHGSIPLAFGHMASL-RHLDLL 297
K+L +D S N L+ ++ P + ++ NLV I N++ G+IP ++G + L + +
Sbjct: 125 KTLVTLDFSYNALSGTLPPSISSLP-NLVG-ITFDGNRISGAIPDSYGSFSKLFTSMTIS 182
Query: 298 SNQLR-EVPKFLGNMSSLKRLVFSYNELRGELSEFIQNVSSGSTKNSSLEWLYLAFNEIT 356
N+L ++P N++ L + S N L G+ S GS KN+ + ++LA N +
Sbjct: 183 RNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLF-----GSDKNT--QKIHLAKNSLA 234
Query: 357 GTIPDLGGFPSLQILSLENNRLTGTISKSIGQ 388
+ +G +L L L NNR+ GT+ + + Q
Sbjct: 235 FDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQ 266
Score = 38.9 bits (89), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 54/149 (36%), Gaps = 24/149 (16%)
Query: 573 GRLPDCWFQFDSLAILNLANNSFFGEIPDSM-SFLRSIXXXXXXXXXXXXXXPSFFMNGS 631
G LP +L + N G IPDS SF + P F N
Sbjct: 139 GTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFAN-L 197
Query: 632 QLTLMDLGKNGLSGEIPTWIGESL----------------------PNLVVLSLRSNKFH 669
L +DL +N L G+ G NL L LR+N+ +
Sbjct: 198 NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIY 257
Query: 670 GNIPFQLCYLSHIQILDLSLNNISGIIPK 698
G +P L L + L++S NN+ G IP+
Sbjct: 258 GTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286
Score = 34.7 bits (78), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 46/211 (21%), Positives = 77/211 (36%), Gaps = 26/211 (12%)
Query: 304 VPKFLGNMSSLKRLVFSYNELRGELSEFIQNVSSGSTKNSSLEWLYLAFNEITGTIPD-L 362
+P L N+ L L G ++ + + K + L +LY+ ++G IPD L
Sbjct: 68 IPSSLANLPYLNFLYI------GGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFL 121
Query: 363 GGFPSLQILSLENNRLTGTISKSIGQXXXXXXXXXXXXXXRGVISEALFSNLSSLDTLQL 422
+L L N L+GT+ SI G I ++ S ++ +
Sbjct: 122 SQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTI 181
Query: 423 SDNSLTLKFSHDWTPPFQLF-----NIFLGSCKI---GPRFPKWLQSQNQTVALDVSNAG 474
S N LT K + F N+ G + + + + ++A D+ G
Sbjct: 182 SRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVG 241
Query: 475 ISDIVPDWFWDLTNQLYYLNLSNNEMKGKLP 505
+S L L+L NN + G LP
Sbjct: 242 LSK-----------NLNGLDLRNNRIYGTLP 261
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 76/282 (26%), Positives = 116/282 (41%), Gaps = 69/282 (24%)
Query: 196 CKLSKFSNWVQVLSNLRSLTNLYLGYCDLPPISTPSLLHINYSKSLEVIDLSNNYLTN-- 253
C++SK ++ ++V + R LT L PP + K ++ LS N L
Sbjct: 4 CEVSKVASHLEVNCDKRQLTAL-------PP---------DLPKDTTILHLSENLLYTFS 47
Query: 254 --SIYPWLFNVSSNLVDHIDLGSNQLHGSIPLAFGHMASLRHLDLLSNQLREVPKFLGNM 311
++ P+ NL D +L Q+ G++P+ L LDL NQL+ +P +
Sbjct: 48 LATLMPYTRLTQLNL-DRCELTKLQVDGTLPV-------LGTLDLSHNQLQSLPLLGQTL 99
Query: 312 SSLKRLVFSYNELRGELSEFIQNVSSGSTKN-SSLEWLYLAFNEITGTIPD-LGGFPSLQ 369
+L L S+N L ++ G+ + L+ LYL NE+ P L P L+
Sbjct: 100 PALTVLDVSFNRL--------TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 151
Query: 370 ILSLENNRLTGTISKSIGQXXXXXXXXXXXXXXRGVISEALFSNLSSLDTLQLSDNSLTL 429
LSL NN+LT + L + L +LDTL L +NSL
Sbjct: 152 KLSLANNQLTE-------------------------LPAGLLNGLENLDTLLLQENSLYT 186
Query: 430 ---KFSHDWTPPFQLF--NIFLGSCKIGPRFPKWLQSQNQTV 466
F PF N +L +C+I F +WLQ + V
Sbjct: 187 IPKGFFGSHLLPFAFLHGNPWLCNCEIL-YFRRWLQDNAENV 227
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 76/282 (26%), Positives = 116/282 (41%), Gaps = 69/282 (24%)
Query: 196 CKLSKFSNWVQVLSNLRSLTNLYLGYCDLPPISTPSLLHINYSKSLEVIDLSNNYLTN-- 253
C++SK ++ ++V + R LT L PP + K ++ LS N L
Sbjct: 4 CEVSKVASHLEVNCDKRQLTAL-------PP---------DLPKDTTILHLSENLLYTFS 47
Query: 254 --SIYPWLFNVSSNLVDHIDLGSNQLHGSIPLAFGHMASLRHLDLLSNQLREVPKFLGNM 311
++ P+ NL D +L Q+ G++P+ L LDL NQL+ +P +
Sbjct: 48 LATLMPYTRLTQLNL-DRCELTKLQVDGTLPV-------LGTLDLSHNQLQSLPLLGQTL 99
Query: 312 SSLKRLVFSYNELRGELSEFIQNVSSGSTKN-SSLEWLYLAFNEITGTIPD-LGGFPSLQ 369
+L L S+N L ++ G+ + L+ LYL NE+ P L P L+
Sbjct: 100 PALTVLDVSFNRL--------TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 151
Query: 370 ILSLENNRLTGTISKSIGQXXXXXXXXXXXXXXRGVISEALFSNLSSLDTLQLSDNSLTL 429
LSL NN+LT + L + L +LDTL L +NSL
Sbjct: 152 KLSLANNQLTE-------------------------LPAGLLNGLENLDTLLLQENSLYT 186
Query: 430 ---KFSHDWTPPFQLF--NIFLGSCKIGPRFPKWLQSQNQTV 466
F PF N +L +C+I F +WLQ + V
Sbjct: 187 IPKGFFGSHLLPFAFLHGNPWLCNCEIL-YFRRWLQDNAENV 227
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 76/282 (26%), Positives = 116/282 (41%), Gaps = 69/282 (24%)
Query: 196 CKLSKFSNWVQVLSNLRSLTNLYLGYCDLPPISTPSLLHINYSKSLEVIDLSNNYLTN-- 253
C++SK ++ ++V + R LT LPP + K ++ LS N L
Sbjct: 4 CEVSKVASHLEVNCDKRQLT-------ALPP---------DLPKDTTILHLSENLLYTFS 47
Query: 254 --SIYPWLFNVSSNLVDHIDLGSNQLHGSIPLAFGHMASLRHLDLLSNQLREVPKFLGNM 311
++ P+ NL D +L Q+ G++P+ L LDL NQL+ +P +
Sbjct: 48 LATLMPYTRLTQLNL-DRCELTKLQVDGTLPV-------LGTLDLSHNQLQSLPLLGQTL 99
Query: 312 SSLKRLVFSYNELRGELSEFIQNVSSGSTKN-SSLEWLYLAFNEITGTIPD-LGGFPSLQ 369
+L L S+N L ++ G+ + L+ LYL NE+ P L P L+
Sbjct: 100 PALTVLDVSFNRL--------TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 151
Query: 370 ILSLENNRLTGTISKSIGQXXXXXXXXXXXXXXRGVISEALFSNLSSLDTLQLSDNSLTL 429
LSL NN+LT + L + L +LDTL L +NSL
Sbjct: 152 KLSLANNQLTE-------------------------LPAGLLNGLENLDTLLLQENSLYT 186
Query: 430 ---KFSHDWTPPFQLF--NIFLGSCKIGPRFPKWLQSQNQTV 466
F PF N +L +C+I F +WLQ + V
Sbjct: 187 IPKGFFGSHLLPFAFLHGNPWLCNCEIL-YFRRWLQDNAENV 227
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 76/282 (26%), Positives = 116/282 (41%), Gaps = 69/282 (24%)
Query: 196 CKLSKFSNWVQVLSNLRSLTNLYLGYCDLPPISTPSLLHINYSKSLEVIDLSNNYLTN-- 253
C++SK ++ ++V + R LT L PP + K ++ LS N L
Sbjct: 4 CEVSKVASHLEVNCDKRQLTAL-------PP---------DLPKDTTILHLSENLLYTFS 47
Query: 254 --SIYPWLFNVSSNLVDHIDLGSNQLHGSIPLAFGHMASLRHLDLLSNQLREVPKFLGNM 311
++ P+ NL D +L Q+ G++P+ L LDL NQL+ +P +
Sbjct: 48 LATLMPYTRLTQLNL-DRCELTKLQVDGTLPV-------LGTLDLSHNQLQSLPLLGQTL 99
Query: 312 SSLKRLVFSYNELRGELSEFIQNVSSGSTKN-SSLEWLYLAFNEITGTIPD-LGGFPSLQ 369
+L L S+N L ++ G+ + L+ LYL NE+ P L P L+
Sbjct: 100 PALTVLDVSFNRL--------TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 151
Query: 370 ILSLENNRLTGTISKSIGQXXXXXXXXXXXXXXRGVISEALFSNLSSLDTLQLSDNSLTL 429
LSL NN+LT + L + L +LDTL L +NSL
Sbjct: 152 KLSLANNQLTE-------------------------LPAGLLNGLENLDTLLLQENSLYT 186
Query: 430 ---KFSHDWTPPFQLF--NIFLGSCKIGPRFPKWLQSQNQTV 466
F PF N +L +C+I F +WLQ + V
Sbjct: 187 IPKGFFGSHLLPFAFLHGNPWLCNCEIL-YFRRWLQDNAENV 227
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 47.4 bits (111), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 76/282 (26%), Positives = 116/282 (41%), Gaps = 69/282 (24%)
Query: 196 CKLSKFSNWVQVLSNLRSLTNLYLGYCDLPPISTPSLLHINYSKSLEVIDLSNNYLTN-- 253
C++SK ++ ++V + R+LT L PP + K ++ LS N L
Sbjct: 5 CEVSKVASHLEVNCDKRNLTAL-------PP---------DLPKDTTILHLSENLLYTFS 48
Query: 254 --SIYPWLFNVSSNLVDHIDLGSNQLHGSIPLAFGHMASLRHLDLLSNQLREVPKFLGNM 311
++ P+ NL D +L Q+ G++P+ L LDL NQL+ +P +
Sbjct: 49 LATLMPYTRLTQLNL-DRCELTKLQVDGTLPV-------LGTLDLSHNQLQSLPLLGQTL 100
Query: 312 SSLKRLVFSYNELRGELSEFIQNVSSGSTKN-SSLEWLYLAFNEITGTIPD-LGGFPSLQ 369
+L L S+N L ++ G+ + L+ LYL NE+ P L P L+
Sbjct: 101 PALTVLDVSFNRL--------TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 152
Query: 370 ILSLENNRLTGTISKSIGQXXXXXXXXXXXXXXRGVISEALFSNLSSLDTLQLSDNSLTL 429
LSL NN LT + L + L +LDTL L +NSL
Sbjct: 153 KLSLANNNLTE-------------------------LPAGLLNGLENLDTLLLQENSLYT 187
Query: 430 ---KFSHDWTPPFQLF--NIFLGSCKIGPRFPKWLQSQNQTV 466
F PF N +L +C+I F +WLQ + V
Sbjct: 188 IPKGFFGSHLLPFAFLHGNPWLCNCEIL-YFRRWLQDNAENV 228
Score = 30.8 bits (68), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Query: 111 LQHLTYLDLSWNNFSGSPIPEFIGSLGKLSELALSSAQFAGPIPHQLGNLSKLQVLDLRF 170
L LT LD+S+N + P+ G LG+L EL L + P L KL+ L L
Sbjct: 100 LPALTVLDVSFNRLTSLPLGALRG-LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLAN 158
Query: 171 NNL 173
NNL
Sbjct: 159 NNL 161
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 47.0 bits (110), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 76/282 (26%), Positives = 116/282 (41%), Gaps = 69/282 (24%)
Query: 196 CKLSKFSNWVQVLSNLRSLTNLYLGYCDLPPISTPSLLHINYSKSLEVIDLSNNYLTN-- 253
C++SK ++ ++V + R+LT L PP + K ++ LS N L
Sbjct: 4 CEVSKVASHLEVNCDKRNLTAL-------PP---------DLPKDTTILHLSENLLYTFS 47
Query: 254 --SIYPWLFNVSSNLVDHIDLGSNQLHGSIPLAFGHMASLRHLDLLSNQLREVPKFLGNM 311
++ P+ NL D +L Q+ G++P+ L LDL NQL+ +P +
Sbjct: 48 LATLMPYTRLTQLNL-DRAELTKLQVDGTLPV-------LGTLDLSHNQLQSLPLLGQTL 99
Query: 312 SSLKRLVFSYNELRGELSEFIQNVSSGSTKN-SSLEWLYLAFNEITGTIPD-LGGFPSLQ 369
+L L S+N L ++ G+ + L+ LYL NE+ P L P L+
Sbjct: 100 PALTVLDVSFNRL--------TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 151
Query: 370 ILSLENNRLTGTISKSIGQXXXXXXXXXXXXXXRGVISEALFSNLSSLDTLQLSDNSLTL 429
LSL NN LT + L + L +LDTL L +NSL
Sbjct: 152 KLSLANNNLTE-------------------------LPAGLLNGLENLDTLLLQENSLYT 186
Query: 430 ---KFSHDWTPPFQLF--NIFLGSCKIGPRFPKWLQSQNQTV 466
F PF N +L +C+I F +WLQ + V
Sbjct: 187 IPKGFFGSHLLPFAFLHGNPWLCNCEIL-YFRRWLQDNAENV 227
Score = 30.8 bits (68), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Query: 111 LQHLTYLDLSWNNFSGSPIPEFIGSLGKLSELALSSAQFAGPIPHQLGNLSKLQVLDLRF 170
L LT LD+S+N + P+ G LG+L EL L + P L KL+ L L
Sbjct: 99 LPALTVLDVSFNRLTSLPLGALRG-LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLAN 157
Query: 171 NNL 173
NNL
Sbjct: 158 NNL 160
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 76/282 (26%), Positives = 116/282 (41%), Gaps = 69/282 (24%)
Query: 196 CKLSKFSNWVQVLSNLRSLTNLYLGYCDLPPISTPSLLHINYSKSLEVIDLSNNYLTN-- 253
C++SK ++ ++V + R+LT L PP + K ++ LS N L
Sbjct: 4 CEVSKVASHLEVNCDKRNLTAL-------PP---------DLPKDTTILHLSENLLYTFS 47
Query: 254 --SIYPWLFNVSSNLVDHIDLGSNQLHGSIPLAFGHMASLRHLDLLSNQLREVPKFLGNM 311
++ P+ NL D +L Q+ G++P+ L LDL NQL+ +P +
Sbjct: 48 LATLMPYTRLTQLNL-DRAELTKLQVDGTLPV-------LGTLDLSHNQLQSLPLLGQTL 99
Query: 312 SSLKRLVFSYNELRGELSEFIQNVSSGSTKN-SSLEWLYLAFNEITGTIPD-LGGFPSLQ 369
+L L S+N L ++ G+ + L+ LYL NE+ P L P L+
Sbjct: 100 PALTVLDVSFNRL--------TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 151
Query: 370 ILSLENNRLTGTISKSIGQXXXXXXXXXXXXXXRGVISEALFSNLSSLDTLQLSDNSLTL 429
LSL NN LT + L + L +LDTL L +NSL
Sbjct: 152 KLSLANNNLTE-------------------------LPAGLLNGLENLDTLLLQENSLYT 186
Query: 430 ---KFSHDWTPPFQLF--NIFLGSCKIGPRFPKWLQSQNQTV 466
F PF N +L +C+I F +WLQ + V
Sbjct: 187 IPKGFFGSHLLPFAFLHGNPWLCNCEIL-YFRRWLQDNAENV 227
Score = 30.8 bits (68), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Query: 111 LQHLTYLDLSWNNFSGSPIPEFIGSLGKLSELALSSAQFAGPIPHQLGNLSKLQVLDLRF 170
L LT LD+S+N + P+ G LG+L EL L + P L KL+ L L
Sbjct: 99 LPALTVLDVSFNRLTSLPLGALRG-LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLAN 157
Query: 171 NNL 173
NNL
Sbjct: 158 NNL 160
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 76/282 (26%), Positives = 115/282 (40%), Gaps = 69/282 (24%)
Query: 196 CKLSKFSNWVQVLSNLRSLTNLYLGYCDLPPISTPSLLHINYSKSLEVIDLSNNYLTN-- 253
C++SK ++ ++V + R LT L PP + K ++ LS N L
Sbjct: 4 CEVSKVASHLEVNCDKRDLTAL-------PP---------DLPKDTTILHLSENLLYTFS 47
Query: 254 --SIYPWLFNVSSNLVDHIDLGSNQLHGSIPLAFGHMASLRHLDLLSNQLREVPKFLGNM 311
++ P+ NL D +L Q+ G++P+ L LDL NQL+ +P +
Sbjct: 48 LATLMPYTRLTQLNL-DRCELTKLQVDGTLPV-------LGTLDLSHNQLQSLPLLGQTL 99
Query: 312 SSLKRLVFSYNELRGELSEFIQNVSSGSTKN-SSLEWLYLAFNEITGTIPD-LGGFPSLQ 369
+L L S+N L ++ G+ + L+ LYL NE+ P L P L+
Sbjct: 100 PALTVLDVSFNRL--------TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 151
Query: 370 ILSLENNRLTGTISKSIGQXXXXXXXXXXXXXXRGVISEALFSNLSSLDTLQLSDNSLTL 429
LSL NN LT + L + L +LDTL L +NSL
Sbjct: 152 KLSLANNNLTE-------------------------LPAGLLNGLENLDTLLLQENSLYT 186
Query: 430 ---KFSHDWTPPFQLF--NIFLGSCKIGPRFPKWLQSQNQTV 466
F PF N +L +C+I F +WLQ + V
Sbjct: 187 IPKGFFGSHLLPFAFLHGNPWLCNCEIL-YFRRWLQDNAENV 227
Score = 30.8 bits (68), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Query: 111 LQHLTYLDLSWNNFSGSPIPEFIGSLGKLSELALSSAQFAGPIPHQLGNLSKLQVLDLRF 170
L LT LD+S+N + P+ G LG+L EL L + P L KL+ L L
Sbjct: 99 LPALTVLDVSFNRLTSLPLGALRG-LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLAN 157
Query: 171 NNL 173
NNL
Sbjct: 158 NNL 160
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 76/282 (26%), Positives = 115/282 (40%), Gaps = 69/282 (24%)
Query: 196 CKLSKFSNWVQVLSNLRSLTNLYLGYCDLPPISTPSLLHINYSKSLEVIDLSNNYLTN-- 253
C++SK ++ ++V + R LT L PP + K ++ LS N L
Sbjct: 4 CEVSKVASHLEVNCDKRDLTAL-------PP---------DLPKDTTILHLSENLLYTFS 47
Query: 254 --SIYPWLFNVSSNLVDHIDLGSNQLHGSIPLAFGHMASLRHLDLLSNQLREVPKFLGNM 311
++ P+ NL D +L Q+ G++P+ L LDL NQL+ +P +
Sbjct: 48 LATLMPYTRLTQLNL-DRCELTKLQVDGTLPV-------LGTLDLSHNQLQSLPLLGQTL 99
Query: 312 SSLKRLVFSYNELRGELSEFIQNVSSGSTKN-SSLEWLYLAFNEITGTIPD-LGGFPSLQ 369
+L L S+N L ++ G+ + L+ LYL NE+ P L P L+
Sbjct: 100 PALTVLDVSFNRL--------TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 151
Query: 370 ILSLENNRLTGTISKSIGQXXXXXXXXXXXXXXRGVISEALFSNLSSLDTLQLSDNSLTL 429
LSL NN LT + L + L +LDTL L +NSL
Sbjct: 152 KLSLANNDLTE-------------------------LPAGLLNGLENLDTLLLQENSLYT 186
Query: 430 ---KFSHDWTPPFQLF--NIFLGSCKIGPRFPKWLQSQNQTV 466
F PF N +L +C+I F +WLQ + V
Sbjct: 187 IPKGFFGSHLLPFAFLHGNPWLCNCEIL-YFRRWLQDNAENV 227
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 76/282 (26%), Positives = 116/282 (41%), Gaps = 69/282 (24%)
Query: 196 CKLSKFSNWVQVLSNLRSLTNLYLGYCDLPPISTPSLLHINYSKSLEVIDLSNNYLTN-- 253
C++SK ++ ++V + R+LT L PP + K ++ LS N L
Sbjct: 4 CEVSKVASHLEVNCDKRNLTAL-------PP---------DLPKDTTILHLSENLLYTFS 47
Query: 254 --SIYPWLFNVSSNLVDHIDLGSNQLHGSIPLAFGHMASLRHLDLLSNQLREVPKFLGNM 311
++ P+ NL D +L Q+ G++P+ L LDL NQL+ +P +
Sbjct: 48 LATLMPYTRLTQLNL-DRAELTKLQVDGTLPV-------LGTLDLSHNQLQSLPLLGQTL 99
Query: 312 SSLKRLVFSYNELRGELSEFIQNVSSGSTKN-SSLEWLYLAFNEITGTIPD-LGGFPSLQ 369
+L L S+N L ++ G+ + L+ LYL NE+ P L P L+
Sbjct: 100 PALTVLDVSFNRL--------TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 151
Query: 370 ILSLENNRLTGTISKSIGQXXXXXXXXXXXXXXRGVISEALFSNLSSLDTLQLSDNSLTL 429
LSL NN LT + L + L +LDTL L +NSL
Sbjct: 152 KLSLANNNLTE-------------------------LPAGLLNGLENLDTLLLQENSLYT 186
Query: 430 ---KFSHDWTPPFQLF--NIFLGSCKIGPRFPKWLQSQNQTV 466
F PF N +L +C+I F +WLQ + V
Sbjct: 187 IPKGFFGSHLLPFAFLHGNPWLCNCEIL-YFRRWLQDNAENV 227
Score = 30.8 bits (68), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Query: 111 LQHLTYLDLSWNNFSGSPIPEFIGSLGKLSELALSSAQFAGPIPHQLGNLSKLQVLDLRF 170
L LT LD+S+N + P+ G LG+L EL L + P L KL+ L L
Sbjct: 99 LPALTVLDVSFNRLTSLPLGALRG-LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLAN 157
Query: 171 NNL 173
NNL
Sbjct: 158 NNL 160
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 75/259 (28%), Positives = 116/259 (44%), Gaps = 26/259 (10%)
Query: 199 SKFSNWVQVLSNLRSLTN--------LYLGYCDLPPISTPSLLHINYSKSLEVIDLSNNY 250
++FS + V NLR + + L L + I S H+ + LE++ LS N+
Sbjct: 43 NQFSKVICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHL---RHLEILQLSRNH 99
Query: 251 LTNSIYPWLFNVSSNLVDHIDLGSNQLHGSIPLAFGHMASLRHLDLLSNQLREVPKFLGN 310
+ +I FN +NL + ++L N+L AF +++ L+ L L +N + +P + N
Sbjct: 100 I-RTIEIGAFNGLANL-NTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFN 157
Query: 311 -MSSLKRLVFSYNELRGELSEFIQNVSSGSTKN-SSLEWLYLAFNEITGTIPDLGGFPSL 368
+ SL+RL GEL + +S G+ + S+L +L LA + IP+L L
Sbjct: 158 RIPSLRRLDL------GELKR-LSYISEGAFEGLSNLRYLNLAMCNLR-EIPNLTPLIKL 209
Query: 369 QILSLENNRLTGTISKSIGQXXXXXXXXXXXXXXRGVISEALFSNLSSLDTLQLSDNSLT 428
L L N L+ S Q VI F NL SL + L+ N+LT
Sbjct: 210 DELDLSGNHLSAIRPGSF-QGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT 268
Query: 429 LKFSHD-WTPPFQLFNIFL 446
L HD +TP L I L
Sbjct: 269 L-LPHDLFTPLHHLERIHL 286
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 65/224 (29%), Positives = 97/224 (43%), Gaps = 20/224 (8%)
Query: 227 ISTPSLLHINYSKSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLHGSIPLAFG 286
I T + H+ + LE++ LS N L I FN +L + ++L N+L AF
Sbjct: 50 IRTDTFKHLRH---LEILQLSKN-LVRKIEVGAFNGLPSL-NTLELFDNRLTTVPTQAFE 104
Query: 287 HMASLRHLDLLSNQLREVPKFLGN-MSSLKRLVFSYNELRGELS--EFIQNVSSGSTKNS 343
+++ LR L L +N + +P + N + SL+RL GEL E+I + N
Sbjct: 105 YLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDL------GELKRLEYISEAAFEGLVN- 157
Query: 344 SLEWLYLAFNEITGTIPDLGGFPSLQILSLENNRLTGTISKSIGQXXXXXXXXXXXXXXR 403
L +L L + IP+L L+ L L NRL I Q
Sbjct: 158 -LRYLNLGMCNLKD-IPNLTALVRLEELELSGNRL-DLIRPGSFQGLTSLRKLWLMHAQV 214
Query: 404 GVISEALFSNLSSLDTLQLSDNSLTLKFSHD-WTPPFQLFNIFL 446
I F +L SL+ L LS N+L + HD +TP +L + L
Sbjct: 215 ATIERNAFDDLKSLEELNLSHNNL-MSLPHDLFTPLHRLERVHL 257
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 65/224 (29%), Positives = 97/224 (43%), Gaps = 20/224 (8%)
Query: 227 ISTPSLLHINYSKSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLHGSIPLAFG 286
I T + H+ + LE++ LS N L I FN +L + ++L N+L AF
Sbjct: 50 IRTDTFKHLRH---LEILQLSKN-LVRKIEVGAFNGLPSL-NTLELFDNRLTTVPTQAFE 104
Query: 287 HMASLRHLDLLSNQLREVPKFLGN-MSSLKRLVFSYNELRGELS--EFIQNVSSGSTKNS 343
+++ LR L L +N + +P + N + SL+RL GEL E+I + N
Sbjct: 105 YLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDL------GELKRLEYISEAAFEGLVN- 157
Query: 344 SLEWLYLAFNEITGTIPDLGGFPSLQILSLENNRLTGTISKSIGQXXXXXXXXXXXXXXR 403
L +L L + IP+L L+ L L NRL I Q
Sbjct: 158 -LRYLNLGMCNLKD-IPNLTALVRLEELELSGNRL-DLIRPGSFQGLTSLRKLWLMHAQV 214
Query: 404 GVISEALFSNLSSLDTLQLSDNSLTLKFSHD-WTPPFQLFNIFL 446
I F +L SL+ L LS N+L + HD +TP +L + L
Sbjct: 215 ATIERNAFDDLKSLEELNLSHNNL-MSLPHDLFTPLHRLERVHL 257
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 59/219 (26%), Positives = 96/219 (43%), Gaps = 27/219 (12%)
Query: 109 LKLQHLTYLDLSWNN----FSGSPIP--EFIGSLGKLSELALSSAQFAGPIPHQLGNLSK 162
LKL+ L L + N FS +P EF+ +L+ + F G +
Sbjct: 322 LKLKSLKRLTFTSNKGGNAFSEVDLPSLEFL-------DLSRNGLSFKGCCSQSDFGTTS 374
Query: 163 LQVLDLRFNNLFSSGNXXXXXXXXXXXXXXXADCK-LSKFSNWVQVLSNLRSLTNLYLGY 221
L+ LDL FN + + + ++ K +S+FS V +LR+L Y
Sbjct: 375 LKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFS----VFLSLRNLI-----Y 425
Query: 222 CDLPPISTPSLLH--INYSKSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLHG 279
D+ T + N SLEV+ ++ N + P +F NL +DL QL
Sbjct: 426 LDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLT-FLDLSQCQLEQ 484
Query: 280 SIPLAFGHMASLRHLDLLSNQLREVPK-FLGNMSSLKRL 317
P AF ++SL+ L++ SNQL+ VP ++SL+++
Sbjct: 485 LSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKI 523
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 38.5 bits (88), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 63/115 (54%), Gaps = 13/115 (11%)
Query: 237 YSKSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLHGSIPLAFGHMASLRHLDL 296
+++S+ V++LS+N LT S++ L V +DL +N++ SIP H+ +L+ L++
Sbjct: 426 WAESILVLNLSSNMLTGSVFRCL----PPKVKVLDLHNNRI-MSIPKDVTHLQALQELNV 480
Query: 297 LSNQLREVPK-FLGNMSSLKRLVFSYNELRGE------LSEFIQNVSSGSTKNSS 344
SNQL+ VP ++SL+ + N LSE+I N SG +NS+
Sbjct: 481 ASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWI-NKHSGVVRNSA 534
Score = 36.2 bits (82), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 57/117 (48%), Gaps = 20/117 (17%)
Query: 223 DLPP-----------ISTPSLLHINYSKSLEVIDLSNNYLTN-SIYPWLFNVSSNLVDHI 270
DLPP IS + I++ L V+ LS+N + + + +LFN ++++
Sbjct: 49 DLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQD---LEYL 105
Query: 271 DLGSNQLHGSIPLAFGHMASLRHLDLLSNQLREVP--KFLGNMSSLKRLVFSYNELR 325
D+ N+L ++ MASLRHLDL N +P K GN++ L L S + R
Sbjct: 106 DVSHNRLQN---ISCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFR 159
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 4/55 (7%)
Query: 105 NPSLLKLQHLTYLDLSWNNFSGSPIPEFIGSLGKLSELALSSAQFAG----PIPH 155
N S + L +LDLS+N+F P+ + G+L KL+ L LS+A+F P+ H
Sbjct: 114 NISCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAH 168
Score = 33.5 bits (75), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 86/183 (46%), Gaps = 19/183 (10%)
Query: 206 QVLSNLRSLTNLYLGYCDLPPISTPSLLHINYSKSLEVIDLSNNYLTNSIYPWLFNVSSN 265
Q S L+ L L L L +L+ N S SLE +D+S N L + Y + +
Sbjct: 371 QGCSTLKRLQTLILQRNGLKNFFKVALMTKNMS-SLETLDVSLNSLNSHAYDRTCAWAES 429
Query: 266 LVDHIDLGSNQLHGSIPLAFGHMASLRHLDLLSNQLREVPKFLGNMSSLKRLVFSYNELR 325
++ ++L SN L GS+ ++ LDL +N++ +PK + ++ +L+ L + N+L+
Sbjct: 430 ILV-LNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLK 486
Query: 326 GELSEFIQNVSSGS-TKNSSLEWLYLAFNEITGTIPDLGGFPSLQILSLENNRLTGTISK 384
V G + +SL++++L N T P ++ LS N+ +G +
Sbjct: 487 S--------VPDGVFDRLTSLQYIWLHDNPWDCTC------PGIRYLSEWINKHSGVVRN 532
Query: 385 SIG 387
S G
Sbjct: 533 SAG 535
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 38.1 bits (87), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 69/236 (29%), Positives = 97/236 (41%), Gaps = 36/236 (15%)
Query: 74 GVRCSNKTGHVLGLDLRASSDSPVDALKGTINPSLLKLQHLTYLDLSWNNFSGSPIPEFI 133
G RC K ++ LDL S D N L L+HL YL+LS+N G F
Sbjct: 341 GTRCLEKLENLQKLDLSHSDIEASDC----CNLQLKNLRHLQYLNLSYNEPLGLEDQAF- 395
Query: 134 GSLGKLSELALSSAQFAGPIPHQ-LGNLSKLQVLDLRFNNLFSSGNXXXXXXXXXXXXXX 192
+L L ++ PH NL L+VL+L L +S
Sbjct: 396 KECPQLELLDVAFTHLHVKAPHSPFQNLHLLRVLNLSHCLLDTSN--------------- 440
Query: 193 XADCKLSKFSNWVQVLSNLRSLTNLYLGYCDLPPISTPSLLHINYSKSLEVIDLSNNYLT 252
+ + L +LR L NL IS +LL + SLE++ LS+ L
Sbjct: 441 ---------QHLLAGLQDLRHL-NLQGNSFQDGSISKTNLLQM--VGSLEILILSSCNLL 488
Query: 253 NSIYPWLFNVSSNLVDHIDLGSNQLHGSIPLAFGHMASLRHLDLLSNQLREVPKFL 308
SI F+ N V+H+DL N L G A H+ L +L++ SN +R +P L
Sbjct: 489 -SIDQQAFHGLRN-VNHLDLSHNSLTGDSMDALSHLKGL-YLNMASNNIRIIPPHL 541
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 40/78 (51%), Gaps = 3/78 (3%)
Query: 245 DLSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLHGSIPLAFGHMASLRHLDLLSNQLREV 304
D + YLT++ + L ++S V+ I+L ++ F ++ LDL + L +
Sbjct: 236 DTDDQYLTSATFEGLCDMS---VESINLQKHRFSDLSSSTFRCFTRVQELDLTAAHLNGL 292
Query: 305 PKFLGNMSSLKRLVFSYN 322
P + M+SLK+LV + N
Sbjct: 293 PSGIEGMNSLKKLVLNAN 310
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 37.4 bits (85), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 70/149 (46%), Gaps = 29/149 (19%)
Query: 243 VIDLSNNYLTNSIYPW----LFNVSSNLVDHIDLGSNQLHGSIPLAFGHMASLRHLDLLS 298
++DLS+N L+ W L N+ S L+ H N L+ AF + +LR+LDL S
Sbjct: 43 LLDLSHNNLSRLRAEWTPTRLTNLHSLLLSH-----NHLNFISSEAFVPVPNLRYLDLSS 97
Query: 299 NQLREVPKFL-GNMSSLKRLVFSYNEL----RGELSEFIQNVSSGSTKNSSLEWLYLAFN 353
N L + +FL ++ +L+ L+ N + R + Q L+ LYL+ N
Sbjct: 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQ-----------LQKLYLSQN 146
Query: 354 EIT----GTIPDLGGFPSLQILSLENNRL 378
+I+ I D P L +L L +N+L
Sbjct: 147 QISRFPVELIKDGNKLPKLMLLDLSSNKL 175
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 37.4 bits (85), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 33/65 (50%)
Query: 111 LQHLTYLDLSWNNFSGSPIPEFIGSLGKLSELALSSAQFAGPIPHQLGNLSKLQVLDLRF 170
L L L ++ N+F + +P+ L L+ L LS Q P +LS LQVL++
Sbjct: 149 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 208
Query: 171 NNLFS 175
NN FS
Sbjct: 209 NNFFS 213
Score = 33.5 bits (75), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Query: 624 PSFFMNGSQLTLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQ 683
P F LT +DL + L PT SL +L VL++ N F F L+ +Q
Sbjct: 168 PDIFTELRNLTFLDLSQCQLEQLSPTAFN-SLSSLQVLNMSHNNFFSLDTFPYKCLNSLQ 226
Query: 684 ILDLSLNNI 692
+LD SLN+I
Sbjct: 227 VLDYSLNHI 235
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 37.4 bits (85), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 33/65 (50%)
Query: 111 LQHLTYLDLSWNNFSGSPIPEFIGSLGKLSELALSSAQFAGPIPHQLGNLSKLQVLDLRF 170
L L L ++ N+F + +P+ L L+ L LS Q P +LS LQVL++
Sbjct: 468 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 527
Query: 171 NNLFS 175
NN FS
Sbjct: 528 NNFFS 532
Score = 33.9 bits (76), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Query: 624 PSFFMNGSQLTLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQ 683
P F LT +DL + L PT SL +L VL++ N F F L+ +Q
Sbjct: 487 PDIFTELRNLTFLDLSQCQLEQLSPTAFN-SLSSLQVLNMSHNNFFSLDTFPYKCLNSLQ 545
Query: 684 ILDLSLNNI 692
+LD SLN+I
Sbjct: 546 VLDYSLNHI 554
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 37.0 bits (84), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 33/65 (50%)
Query: 111 LQHLTYLDLSWNNFSGSPIPEFIGSLGKLSELALSSAQFAGPIPHQLGNLSKLQVLDLRF 170
L L L ++ N+F + +P+ L L+ L LS Q P +LS LQVL++
Sbjct: 444 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 503
Query: 171 NNLFS 175
NN FS
Sbjct: 504 NNFFS 508
Score = 33.5 bits (75), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Query: 624 PSFFMNGSQLTLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQ 683
P F LT +DL + L PT SL +L VL++ N F F L+ +Q
Sbjct: 463 PDIFTELRNLTFLDLSQCQLEQLSPTAFN-SLSSLQVLNMSHNNFFSLDTFPYKCLNSLQ 521
Query: 684 ILDLSLNNI 692
+LD SLN+I
Sbjct: 522 VLDYSLNHI 530
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 37.0 bits (84), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 50/82 (60%), Gaps = 6/82 (7%)
Query: 237 YSKSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLHGSIPLAFGHMASLRHLDL 296
++KSL +++S+N LT++I+ L + +DL SN++ SIP + +L+ L++
Sbjct: 397 WTKSLLSLNMSSNILTDTIFRCL----PPRIKVLDLHSNKI-KSIPKQVVKLEALQELNV 451
Query: 297 LSNQLREVPK-FLGNMSSLKRL 317
SNQL+ VP ++SL+++
Sbjct: 452 ASNQLKSVPDGIFDRLTSLQKI 473
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 72/165 (43%), Gaps = 22/165 (13%)
Query: 269 HIDLGSNQLHGSIPLAFGHMASLRHLDLLSNQLREVPK---FLGNMSSLKRL-----VFS 320
H+D +N L ++ GH+ L L L NQL+E+ K M SL++L S
Sbjct: 328 HLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVS 387
Query: 321 YNELRGELSEFIQNVSSGSTKNSSLEWLYLAFNEITGTIPDLGGFPSLQILSLENNRLTG 380
Y+E +G+ S SL L ++ N +T TI P +++L L +N++
Sbjct: 388 YDEKKGDCSW-----------TKSLLSLNMSSNILTDTIFRCLP-PRIKVLDLHSNKI-K 434
Query: 381 TISKSIGQXXXXXXXXXXXXXXRGVISEALFSNLSSLDTLQLSDN 425
+I K + + + V + +F L+SL + L N
Sbjct: 435 SIPKQVVKLEALQELNVASNQLKSV-PDGIFDRLTSLQKIWLHTN 478
Score = 30.8 bits (68), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 6/54 (11%)
Query: 114 LTYLDLSWNNFSGSPIPEFIGSLGKLSELALSSAQFAG----PIPHQLGNLSKL 163
L +LDLS+N F PI + G++ +L L LS+ PI H N+SK+
Sbjct: 92 LKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHL--NISKV 143
>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|C Chain C, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|D Chain D, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARR|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
pdb|4ARR|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
Length = 279
Score = 37.0 bits (84), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 51/99 (51%), Gaps = 5/99 (5%)
Query: 228 STPSLLHINYSKSLEVIDLSNNYLTNSIYPW---LFNVSSNLVDHIDLGSNQLHGSIPLA 284
+T L HI + ++ +LS+ L +I LF+ NL + I+ GSN+L
Sbjct: 131 TTRRLTHIPANLLTDMRNLSHLELRANIEEMPSHLFDDLENL-ESIEFGSNKLRQMPRGI 189
Query: 285 FGHMASLRHLDLLSNQLREVPK-FLGNMSSLKRLVFSYN 322
FG M L+ L+L SNQL+ VP ++SL+++ N
Sbjct: 190 FGKMPKLKQLNLASNQLKSVPDGIFDRLTSLQKIWLHTN 228
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 36.6 bits (83), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 45/87 (51%), Gaps = 3/87 (3%)
Query: 240 SLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLHGSIPLAFGHMASLRHLDLLSN 299
+L + L N L S+ P +F+ + L ++ LG N+L F + SL+ L L +N
Sbjct: 110 NLAELRLDRNQL-KSLPPRVFDSLTKLT-YLSLGYNELQSLPKGVFDKLTSLKELRLYNN 167
Query: 300 QLREVPK-FLGNMSSLKRLVFSYNELR 325
QL+ VP+ ++ LK L N+L+
Sbjct: 168 QLKRVPEGAFDKLTELKTLKLDNNQLK 194
Score = 29.6 bits (65), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 69/180 (38%), Gaps = 28/180 (15%)
Query: 269 HIDLGSNQLHGSIPLAFGHMASLRHLDLLSNQLREVPK-FLGNMSSLKRLVFSYNEL--- 324
+DL SN+L AF + LR L L N+L+ +P + +L+ L + N+L
Sbjct: 41 KLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQAL 100
Query: 325 -----------------RGELSEFIQNVSSGSTKNSSLEWLYLAFNEITGTIPD--LGGF 365
R +L V TK L +L L +NE+ ++P
Sbjct: 101 PIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTK---LTYLSLGYNELQ-SLPKGVFDKL 156
Query: 366 PSLQILSLENNRLTGTISKSIGQXXXXXXXXXXXXXXRGVISEALFSNLSSLDTLQLSDN 425
SL+ L L NN+L + + + V E F +L L LQL +N
Sbjct: 157 TSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRV-PEGAFDSLEKLKMLQLQEN 215
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 30/56 (53%)
Query: 270 IDLGSNQLHGSIPLAFGHMASLRHLDLLSNQLREVPKFLGNMSSLKRLVFSYNELR 325
+DLG+NQL F + L+ L + N+L E+P+ + ++ L L N+L+
Sbjct: 93 LDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLK 148
Score = 33.1 bits (74), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 53/97 (54%), Gaps = 6/97 (6%)
Query: 242 EVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLHGSIPLA-FGHMASLRHLDLLSNQ 300
+++ L +N +T + P +F+ NL + + LGSNQL G++P+ F + L LDL +NQ
Sbjct: 43 QILYLHDNQITK-LEPGVFDSLINLKE-LYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQ 99
Query: 301 LREVP-KFLGNMSSLKRLVFSYNELRGELSEFIQNVS 336
L +P + LK L N+L EL I+ ++
Sbjct: 100 LTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLT 135
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
Query: 626 FFMNGSQLTLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQIL 685
F + +QLT++DLG N L+ +P+ + + L +L L + NK +P + L+H+ L
Sbjct: 83 VFDSLTQLTVLDLGTNQLT-VLPSAVFDRLVHLKELFMCCNKL-TELPRGIERLTHLTHL 140
Query: 686 DLSLNNISGIIPKCFHNFTAMT 707
L N + I F +++T
Sbjct: 141 ALDQNQLKSIPHGAFDRLSSLT 162
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 34.7 bits (78), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 55/109 (50%), Gaps = 13/109 (11%)
Query: 270 IDLGSNQLHGSIPLAFGHMASLRHLDLLSNQLREVPKFLGNMSSLKRLVFSYNELRGELS 329
++L NQ+ PL ++ + L+L N L+ V G + S+K L + S
Sbjct: 74 LELKDNQITDLTPLK--NLTKITELELSGNPLKNVSAIAG-LQSIKTLDLT--------S 122
Query: 330 EFIQNVSSGSTKNSSLEWLYLAFNEITGTIPDLGGFPSLQILSLENNRL 378
I +V+ + S+L+ LYL N+IT P L G +LQ LS+ NN++
Sbjct: 123 TQITDVTPLAGL-SNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNNQV 169
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 34.7 bits (78), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 80/314 (25%), Positives = 120/314 (38%), Gaps = 37/314 (11%)
Query: 217 LYLGYCDLPPISTPSLLHINYSKSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQ 276
L L L P T L + S++ + L+NN L + + + +DL N
Sbjct: 200 LLLNNAQLNPHLTEKLCWELSNTSIQNLSLANNQLLATSESTFSGLKWTNLTQLDLSYNN 259
Query: 277 LHGSIPLAFGHMASLRHLDLLSNQLREV-PKFLGNMSSLKRLVFSYNELRGELSEFIQNV 335
LH +F ++ SLR+L L N ++ + P+ +S+L+ L R + +
Sbjct: 260 LHDVGNGSFSYLPSLRYLSLEYNNIQRLSPRSFYGLSNLRYLSLK----RAFTKQSVSLA 315
Query: 336 SSGSTKNSSLEWL-YLAF-NEITGTIPD-----LGGFPSLQILSLEN-----NRLTGTIS 383
S + + S +WL YL + N IP G SL+ LSL LT
Sbjct: 316 SHPNIDDFSFQWLKYLEYLNMDDNNIPSTKSNTFTGLVSLKYLSLSKTFTSLQTLTNETF 375
Query: 384 KSIGQXXXXXXXXXXXXXXRGVISEALFSNLSSLDTLQLSDNSLTLKFS-HDWTPPFQLF 442
S+ + I+ FS L L L L N + K S +W +F
Sbjct: 376 VSLAHSPLLTLNLTKNHISK--IANGTFSWLGQLRILDLGLNEIEQKLSGQEWRGLRNIF 433
Query: 443 NIFLGSCKIGPRFPKWLQSQNQTVALDVSNAGI---------SDIVPDWFWDLTNQLYYL 493
I+L + K+LQ + AL S + DI P F L N L L
Sbjct: 434 EIYLS-------YNKYLQLSTSSFALVPSLQRLMLRRVALKNVDISPSPFRPLRN-LTIL 485
Query: 494 NLSNNEMKGKLPDL 507
+LSNN + DL
Sbjct: 486 DLSNNNIANINEDL 499
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Query: 624 PSFFMNGSQLTLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQ 683
P+ F SQL ++D G N +S P + + LP L VL+L+ N+ + +++
Sbjct: 42 PTNFTRYSQLAILDAGFNSISKLEPE-LCQILPLLKVLNLQHNELSQISDQTFVFCTNLT 100
Query: 684 ILDLSLNNISGIIPKCFHNFTAMTK 708
LDL N+I I F N + K
Sbjct: 101 ELDLMSNSIHKIKSNPFKNQKNLIK 125
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 33.5 bits (75), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 47/145 (32%), Positives = 67/145 (46%), Gaps = 13/145 (8%)
Query: 207 VLSNLRSLTNLYLGYCDLPPISTPSLLHINYSKSLEVIDLSNNYLTNSIYPWLFNVSSNL 266
V L SLT LYLG L S P+ + N SL ++LS N L S+ +F+ + L
Sbjct: 47 VFDELTSLTQLYLGGNKLQ--SLPNGV-FNKLTSLTYLNLSTNQL-QSLPNGVFDKLTQL 102
Query: 267 VDHIDLGSNQLHGSIPLAFGHMASLRHLDLLSNQLREVPK-FLGNMSSLKRLVFSYNELR 325
+ L +NQL F + L+ L L NQL+ VP ++SL+ + N
Sbjct: 103 -KELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD 161
Query: 326 GE------LSEFIQNVSSGSTKNSS 344
LSE+I N SG +NS+
Sbjct: 162 CTCPGIRYLSEWI-NKHSGVVRNSA 185
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 33.1 bits (74), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 55/118 (46%), Gaps = 3/118 (2%)
Query: 209 SNLRSLTNLYLGYCDLPPISTPSLLHINYSKSLEVIDLSNNYLTNSIYPWLFNVSSNLVD 268
+ R LT L D + T S + L + L+NN L S+ +F+ + L D
Sbjct: 53 ATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA-SLPLGVFDHLTQL-D 110
Query: 269 HIDLGSNQLHGSIPLAFGHMASLRHLDLLSNQLREVPK-FLGNMSSLKRLVFSYNELR 325
+ LG NQL F + L+ L L +NQL+ +P +++L+ L S N+L+
Sbjct: 111 KLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ 168
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 33.1 bits (74), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 55/118 (46%), Gaps = 3/118 (2%)
Query: 209 SNLRSLTNLYLGYCDLPPISTPSLLHINYSKSLEVIDLSNNYLTNSIYPWLFNVSSNLVD 268
+ R LT L D + T S + L + L+NN L S+ +F+ + L D
Sbjct: 53 ATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA-SLPLGVFDHLTQL-D 110
Query: 269 HIDLGSNQLHGSIPLAFGHMASLRHLDLLSNQLREVPK-FLGNMSSLKRLVFSYNELR 325
+ LG NQL F + L+ L L +NQL+ +P +++L+ L S N+L+
Sbjct: 111 KLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ 168
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 32.7 bits (73), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 73/163 (44%), Gaps = 25/163 (15%)
Query: 243 VIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLHGSIPLAFGHMASLRHLDLLSNQLR 302
++DL NN +T I F NL I L +N++ P AF + L L L NQL+
Sbjct: 56 LLDLQNNKIT-EIKDGDFKNLKNLHTLI-LINNKISKISPGAFAPLVKLERLYLSKNQLK 113
Query: 303 EVPKFLGNMSSLKRLVFSYNEL--------RGELSEFIQNVSSGSTKNSSLE-------- 346
E+P+ + +L+ L NE+ G + + + K+S +E
Sbjct: 114 ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMK 171
Query: 347 ---WLYLAFNEITGTIPDLGGFPSLQILSLENNRLTGTISKSI 386
++ +A IT TIP G PSL L L+ N++T + S+
Sbjct: 172 KLSYIRIADTNIT-TIPQ-GLPPSLTELHLDGNKITKVDAASL 212
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 32.7 bits (73), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 73/163 (44%), Gaps = 25/163 (15%)
Query: 243 VIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLHGSIPLAFGHMASLRHLDLLSNQLR 302
++DL NN +T I F NL I L +N++ P AF + L L L NQL+
Sbjct: 56 LLDLQNNKIT-EIKDGDFKNLKNLHTLI-LINNKISKISPGAFAPLVKLERLYLSKNQLK 113
Query: 303 EVPKFLGNMSSLKRLVFSYNEL--------RGELSEFIQNVSSGSTKNSSLE-------- 346
E+P+ + +L+ L NE+ G + + + K+S +E
Sbjct: 114 ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMK 171
Query: 347 ---WLYLAFNEITGTIPDLGGFPSLQILSLENNRLTGTISKSI 386
++ +A IT TIP G PSL L L+ N++T + S+
Sbjct: 172 KLSYIRIADTNIT-TIPQ-GLPPSLTELHLDGNKITKVDAASL 212
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 38/87 (43%), Gaps = 26/87 (29%)
Query: 240 SLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLHGSIPLAFGHMASLRHLDLLSN 299
S+E I+L +Y FN+SSN F + L+ LDL +
Sbjct: 255 SVESINLQKHYF--------FNISSN------------------TFHCFSGLQELDLTAT 288
Query: 300 QLREVPKFLGNMSSLKRLVFSYNELRG 326
L E+P L +S+LK+LV S N+
Sbjct: 289 HLSELPSGLVGLSTLKKLVLSANKFEN 315
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 61/131 (46%), Gaps = 17/131 (12%)
Query: 259 LFNVSSNLVDHIDLGSNQLHGSIPLAFGHMASLRHLDLLSNQLREVPK-FLGNMSSLKRL 317
+F+ +NL +++L NQL F + +L LDL NQL+ +P+ ++ LK L
Sbjct: 128 VFDKLTNLT-YLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDL 186
Query: 318 VFSYNELRGELSEFIQNVSSGS-TKNSSLEWLYLAFNEITGTIPDLGGFPSLQILSLENN 376
N+L+ V G + +SL++++L N T P ++ LS N
Sbjct: 187 RLYQNQLKS--------VPDGVFDRLTSLQYIWLHDNPWDCTC------PGIRYLSEWIN 232
Query: 377 RLTGTISKSIG 387
+ +G + S G
Sbjct: 233 KHSGVVRNSAG 243
Score = 31.2 bits (69), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 55/112 (49%), Gaps = 10/112 (8%)
Query: 240 SLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLHGSIPLAFGHMASLRHLDLLSN 299
+L ++L++N L S+ +F+ +NL + +DL NQL F + L+ L L N
Sbjct: 134 NLTYLNLAHNQL-QSLPKGVFDKLTNLTE-LDLSYNQLQSLPEGVFDKLTQLKDLRLYQN 191
Query: 300 QLREVPK-FLGNMSSLKRLVFSYNELRGE------LSEFIQNVSSGSTKNSS 344
QL+ VP ++SL+ + N LSE+I N SG +NS+
Sbjct: 192 QLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWI-NKHSGVVRNSA 242
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 4/65 (6%)
Query: 259 LFNVSSNLVDHIDLGSNQLHGS----IPLAFGHMASLRHLDLLSNQLREVPKFLGNMSSL 314
+FN+S+N+ + L L+G+ +P ++++LR LDL N+L +P LG+ L
Sbjct: 236 IFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQL 295
Query: 315 KRLVF 319
K F
Sbjct: 296 KYFYF 300
Score = 30.8 bits (68), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 44/89 (49%), Gaps = 10/89 (11%)
Query: 291 LRHLDLLSNQLREVPKFLGNMSSLKRLVFSYNELRGELSEFIQNVSSGSTKNSSLEWLYL 350
L L L N L E+P + N+S+L+ L S+N L +E GS L++ Y
Sbjct: 249 LTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAEL------GSC--FQLKYFYF 300
Query: 351 AFNEITGTIP-DLGGFPSLQILSLENNRL 378
F+ + T+P + G +LQ L +E N L
Sbjct: 301 -FDNMVTTLPWEFGNLCNLQFLGVEGNPL 328
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 32.0 bits (71), Expect = 1.7, Method: Composition-based stats.
Identities = 26/76 (34%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
Query: 98 DALKGTINPSLLKLQHLTYLDLSWNNFSGSPIPEFIGSLGKLSELALSSAQFAGPIPHQL 157
+AL+ + + L +LT+L L N S P F G L L L L + A PH
Sbjct: 138 NALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRG-LHSLDRLLLHQNRVAHVHPHAF 196
Query: 158 GNLSKLQVLDLRFNNL 173
+L +L L L NNL
Sbjct: 197 RDLGRLMTLYLFANNL 212
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 32.0 bits (71), Expect = 1.7, Method: Composition-based stats.
Identities = 26/76 (34%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
Query: 98 DALKGTINPSLLKLQHLTYLDLSWNNFSGSPIPEFIGSLGKLSELALSSAQFAGPIPHQL 157
+AL+ + + L +LT+L L N S P F G L L L L + A PH
Sbjct: 139 NALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRG-LHSLDRLLLHQNRVAHVHPHAF 197
Query: 158 GNLSKLQVLDLRFNNL 173
+L +L L L NNL
Sbjct: 198 RDLGRLMTLYLFANNL 213
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 43/90 (47%), Gaps = 4/90 (4%)
Query: 236 NYSKSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLHGSIPLAFGHMASLRHLD 295
NY K L +IDLSNN ++ N++ L + L N+L P F + SLR L
Sbjct: 52 NY-KHLTLIDLSNNRISTLSNQSFSNMTQLLT--LILSYNRLRCIPPRTFDGLKSLRLLS 108
Query: 296 LLSNQLREVPK-FLGNMSSLKRLVFSYNEL 324
L N + VP+ ++S+L L N L
Sbjct: 109 LHGNDISVVPEGAFNDLSALSHLAIGANPL 138
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 55/110 (50%), Gaps = 13/110 (11%)
Query: 270 IDLGSNQLHGSIPLAFGHMASLRHLDLLSNQLREVPKFLGNMSSLKRLVFSYNELRGELS 329
++L NQ+ PL ++ + L+L N L+ V G + S+K L + S
Sbjct: 68 LELKDNQITDLAPLK--NLTKITELELSGNPLKNVSAIAG-LQSIKTLDLT--------S 116
Query: 330 EFIQNVSSGSTKNSSLEWLYLAFNEITGTIPDLGGFPSLQILSLENNRLT 379
I +V+ + S+L+ LYL N+IT P L G +LQ LS+ N +++
Sbjct: 117 TQITDVTPLAGL-SNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVS 164
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
Query: 236 NYSKSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLHGSIPLAFGHMASLRHLD 295
N +++ I L N + I P F+ L IDL +NQ+ P AF + SL L
Sbjct: 29 NLPETITEIRLEQNTI-KVIPPGAFSPYKKL-RRIDLSNNQISELAPDAFQGLRSLNSLV 86
Query: 296 LLSNQLREVPKFL 308
L N++ E+PK L
Sbjct: 87 LYGNKITELPKSL 99
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 31.2 bits (69), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
Query: 236 NYSKSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLHGSIPLAFGHMASLRHLD 295
N +++ I L N + I P F+ L IDL +NQ+ P AF + SL L
Sbjct: 29 NLPETITEIRLEQNTI-KVIPPGAFSPYKKL-RRIDLSNNQISELAPDAFQGLRSLNSLV 86
Query: 296 LLSNQLREVPKFL 308
L N++ E+PK L
Sbjct: 87 LYGNKITELPKSL 99
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 30.8 bits (68), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 54/215 (25%), Positives = 89/215 (41%), Gaps = 29/215 (13%)
Query: 114 LTYLDLSWNNFSGSPIPEFIGSLG--KLSELALSSAQFAGPIPHQLGNLSKLQVLDLRFN 171
+T LDLS N F S F ++ K+ L LS++ G G+ + + F
Sbjct: 214 ITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGS---SFGHTNFKDPDNFTFK 270
Query: 172 NLFSSGNXXXXXXXXXXXXXXXADCKLSK---FSNWVQVLSNLRSLTNLYLGYCDLPPIS 228
L +SG C LSK F+ V S+ L L L ++ I
Sbjct: 271 GLEASG---------------VKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKID 315
Query: 229 TPSLLHINYSKSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLHGSIPLAFGHM 288
+ + + L ++LS N+L SI +F L + +DL N + +F +
Sbjct: 316 DNAFWGLTH---LLKLNLSQNFL-GSIDSRMFENLDKL-EVLDLSYNHIRALGDQSFLGL 370
Query: 289 ASLRHLDLLSNQLREVPK-FLGNMSSLKRLVFSYN 322
+L+ L L +NQL+ VP ++SL+++ N
Sbjct: 371 PNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 405
>pdb|1LTX|A Chain A, Structure Of Rab Escort Protein-1 In Complex With Rab
Geranylgeranyl Transferase And Isoprenoid
Length = 567
Score = 30.8 bits (68), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 63/150 (42%), Gaps = 15/150 (10%)
Query: 235 INYSKSLEVID-LSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLHGSIPLAFGHMASL-- 291
+ Y +L+ +D + YL + +L S +++ D+ L H+ L
Sbjct: 405 LQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLL 464
Query: 292 -RHLDLLSNQLREVPKFLGNMSSLKRLVFSYNELRGELSEFIQNVSSGSTKNSSLEWLYL 350
HLDL N+LR +P L + L+ L S N L +NV G L+ L L
Sbjct: 465 VTHLDLSHNRLRALPPALAALRCLEVLQASDNAL--------ENV-DGVANLPRLQELLL 515
Query: 351 AFNEI--TGTIPDLGGFPSLQILSLENNRL 378
N + + I L P L +L+L+ N L
Sbjct: 516 CNNRLQQSAAIQPLVSCPRLVLLNLQGNSL 545
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 30.8 bits (68), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 44/94 (46%), Gaps = 3/94 (3%)
Query: 240 SLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLHGSIPLAFGHMASLRHLDLLSN 299
+ +V+ L N +T + P +F+ + L +++L NQL F + L HL L N
Sbjct: 41 TTQVLHLYINQITK-LEPGVFDSLTQLT-YLNLAVNQLTALPVGVFDKLTKLTHLALHIN 98
Query: 300 QLREVPK-FLGNMSSLKRLVFSYNELRGELSEFI 332
QL+ +P N+ SL + N E S+ +
Sbjct: 99 QLKSIPMGVFDNLKSLTHIYLFNNPWDCECSDIL 132
>pdb|1DCE|A Chain A, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
pdb|1DCE|C Chain C, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
Length = 567
Score = 30.8 bits (68), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 63/150 (42%), Gaps = 15/150 (10%)
Query: 235 INYSKSLEVID-LSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLHGSIPLAFGHMASL-- 291
+ Y +L+ +D + YL + +L S +++ D+ L H+ L
Sbjct: 405 LQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLL 464
Query: 292 -RHLDLLSNQLREVPKFLGNMSSLKRLVFSYNELRGELSEFIQNVSSGSTKNSSLEWLYL 350
HLDL N+LR +P L + L+ L S N L +NV G L+ L L
Sbjct: 465 VTHLDLSHNRLRALPPALAALRCLEVLQASDNAL--------ENV-DGVANLPRLQELLL 515
Query: 351 AFNEI--TGTIPDLGGFPSLQILSLENNRL 378
N + + I L P L +L+L+ N L
Sbjct: 516 CNNRLQQSAAIQPLVSCPRLVLLNLQGNSL 545
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 30.8 bits (68), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 46/82 (56%), Gaps = 6/82 (7%)
Query: 240 SLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLHGSIPLA--FGHMASLRHLDLL 297
SL +DLS N L+ S ++ +N + H+DL N G+I ++ F + L+HLD
Sbjct: 351 SLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFN---GAIIMSANFMGLEELQHLDFQ 407
Query: 298 SNQLREVPKFLGNMSSLKRLVF 319
+ L+ V +F + SL++L++
Sbjct: 408 HSTLKRVTEFSAFL-SLEKLLY 428
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 30.8 bits (68), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 23/46 (50%)
Query: 655 LPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPKCF 700
LP+LV L L+ N+ G P SHIQ L L N I I K F
Sbjct: 53 LPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMF 98
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 30.8 bits (68), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 46/82 (56%), Gaps = 6/82 (7%)
Query: 240 SLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLHGSIPLA--FGHMASLRHLDLL 297
SL +DLS N L+ S ++ +N + H+DL N G+I ++ F + L+HLD
Sbjct: 346 SLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFN---GAIIMSANFMGLEELQHLDFQ 402
Query: 298 SNQLREVPKFLGNMSSLKRLVF 319
+ L+ V +F + SL++L++
Sbjct: 403 HSTLKRVTEFSAFL-SLEKLLY 423
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 30.4 bits (67), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 62/137 (45%), Gaps = 14/137 (10%)
Query: 240 SLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLHGSIPLAFGHMASLRHLDLLSN 299
L ++ L +N LT++ WL N LV+ +DL N+L + F M L L + +N
Sbjct: 227 ELTILKLQHNNLTDT--AWLLNYPG-LVE-VDLSYNELEKIMYHPFVKMQRLERLYISNN 282
Query: 300 QLREVPKFLGNMSSLKRLVFSYNELRGELSEFIQNVSSGSTKNSSLEWLYLAFNEITGTI 359
+L + + + +LK L S+N L +V + LE LYL N I
Sbjct: 283 RLVALNLYGQPIPTLKVLDLSHNHLL--------HVERNQPQFDRLENLYLDHNSIVTL- 333
Query: 360 PDLGGFPSLQILSLENN 376
L +L+ L+L +N
Sbjct: 334 -KLSTHHTLKNLTLSHN 349
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 30.4 bits (67), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 70/156 (44%), Gaps = 20/156 (12%)
Query: 239 KSLEVIDLSNN-----YLTNSIYPWLFNVSSNLV-DHIDLGSNQLHGSIPLAFGHMASLR 292
KSLE +DLS N YL NS + LV L S Q G I L ++ SL
Sbjct: 360 KSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSL- 418
Query: 293 HLDLLSNQLREVP---------KFLGNMSSLKRLVFSYNELRGELSEFIQN-VSSGSTKN 342
D+ N +P +FL S+ R+V + E+ + N + S S
Sbjct: 419 --DISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLFL 476
Query: 343 SSLEWLYLAFNEITGTIPDLGGFPSLQILSLENNRL 378
L+ LY++ N++ T+PD FP L ++ + +N+L
Sbjct: 477 PRLQELYISRNKL-KTLPDASLFPVLLVMKIASNQL 511
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 30.4 bits (67), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Query: 259 LFNVSSNLVDHIDLGSNQLHGSIPLAFGHMASLRHLDLLSNQLREVPK-FLGNMSSLKRL 317
+F+ +NL ++ L NQL F + +L LDL +NQL+ +P+ ++ LK+L
Sbjct: 128 VFDKLTNLT-YLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQL 186
Query: 318 VFSYNELR 325
+ N+L+
Sbjct: 187 SLNDNQLK 194
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 30.0 bits (66), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 4/79 (5%)
Query: 240 SLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLHGSIPLAFGHMASLRHLDLLSN 299
+ +V+ L +N +T + P +F+ + L +DL +NQL F + L L L N
Sbjct: 39 TTQVLYLYDNQITK-LEPGVFDRLTQLT-RLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 96
Query: 300 QLREVPKFLGNMSSLKRLV 318
QL+ +P+ G +LK L
Sbjct: 97 QLKSIPR--GAFDNLKSLT 113
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 30.0 bits (66), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 69/156 (44%), Gaps = 20/156 (12%)
Query: 239 KSLEVIDLSNN-----YLTNSIYPWLFNVSSNLV-DHIDLGSNQLHGSIPLAFGHMASLR 292
KSLE +DLS N YL NS + LV L S Q G I L ++ SL
Sbjct: 334 KSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSL- 392
Query: 293 HLDLLSNQLREVP---------KFLGNMSSLKRLVFSYNELRGELSEFIQN-VSSGSTKN 342
D+ N +P +FL S+ R+V + E+ + N + S S
Sbjct: 393 --DISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLFL 450
Query: 343 SSLEWLYLAFNEITGTIPDLGGFPSLQILSLENNRL 378
L+ LY++ N++ T+PD FP L ++ + N+L
Sbjct: 451 PRLQELYISRNKL-KTLPDASLFPVLLVMKISRNQL 485
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 30.0 bits (66), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 4/79 (5%)
Query: 240 SLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLHGSIPLAFGHMASLRHLDLLSN 299
+ +V+ L +N +T + P +F+ + L +DL +NQL F + L L L N
Sbjct: 31 TTQVLYLYDNQITK-LEPGVFDRLTQLT-RLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88
Query: 300 QLREVPKFLGNMSSLKRLV 318
QL+ +P+ G +LK L
Sbjct: 89 QLKSIPR--GAFDNLKSLT 105
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 30.0 bits (66), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 67/246 (27%), Positives = 106/246 (43%), Gaps = 54/246 (21%)
Query: 284 AFGHMASLRHLDLLSNQLREVPKFLGNMSSLKRLVFSYNELRGELSEFIQNVSSGSTKNS 343
A + SL+ L SNQ+ ++ K L N+++L+RL S N++ ++S K +
Sbjct: 146 ALSGLTSLQQLSFSSNQVTDL-KPLANLTTLERLDISSNKV-SDISVL--------AKLT 195
Query: 344 SLEWLYLAFNEITGTIPDLGGFPSLQILSLENNRLTGTISKSIGQXXXXXXXXXXXXXXR 403
+LE L N+I+ P LG +L LSL N+L K IG
Sbjct: 196 NLESLIATNNQISDITP-LGILTNLDELSLNGNQL-----KDIG---------------- 233
Query: 404 GVISEALFSNLSSLDTLQLSDNSLTLKFSHDWTPP---FQLFNIFLGSCKIGPRFPKWLQ 460
+ A +NL+ LD L++N ++ + P +L + LG+ +I P L
Sbjct: 234 ---TLASLTNLTDLD---LANNQIS-----NLAPLSGLTKLTELKLGANQISNISP--LA 280
Query: 461 SQNQTVALDVSNAGISDIVPDWFWDLTN----QLYYLNLSNNEMKGKLPDLSRKFDSYGP 516
L+++ + DI P +L N LY+ N+S+ L L R F S
Sbjct: 281 GLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFSNNK 338
Query: 517 GIDVSS 522
DVSS
Sbjct: 339 VSDVSS 344
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
From Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
Effector Protein From Yersinia Pestis
Length = 454
Score = 29.6 bits (65), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 57/218 (26%), Positives = 93/218 (42%), Gaps = 45/218 (20%)
Query: 291 LRHLDLLSNQLREVPKFLGNMSSLKRLVFSYNELRG--ELSEFIQNVSSGSTKNSSLEWL 348
L +L + +NQL ++P+ L N S LK + N L+ +L ++ +++G N+ LE L
Sbjct: 133 LEYLGVSNNQLEKLPE-LQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAG---NNQLEEL 188
Query: 349 YLAFNEITGTIPDLGGFPSLQILSLENNRLTGTISKSIGQXXXXXXXXXXXXXXRGVISE 408
P+L P L + +NN S+ + ++ E
Sbjct: 189 -----------PELQNLPFLTAIYADNN--------SLKKLPDLPLSLESIVAGNNILEE 229
Query: 409 -ALFSNLSSLDTLQLSDNSLTLKFSHDWTPPFQLFNIFLGSCKIGPRFPKWLQSQNQTVA 467
NL L T+ +DN+L LK D P + N+ P P+ L
Sbjct: 230 LPELQNLPFLTTI-YADNNL-LKTLPDLPPSLEALNVRDNYLTDLPELPQSL------TF 281
Query: 468 LDVSN---AGISDIVPDWFWDLTNQLYYLNLSNNEMKG 502
LDVS +G+S++ P+ LYYLN S+NE++
Sbjct: 282 LDVSENIFSGLSELPPN--------LYYLNASSNEIRS 311
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 29.6 bits (65), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 62/137 (45%), Gaps = 14/137 (10%)
Query: 240 SLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLHGSIPLAFGHMASLRHLDLLSN 299
L ++ L +N LT++ WL N LV+ +DL N+L + F M L L + +N
Sbjct: 233 ELTILKLQHNNLTDT--AWLLNYPG-LVE-VDLSYNELEKIMYHPFVKMQRLERLYISNN 288
Query: 300 QLREVPKFLGNMSSLKRLVFSYNELRGELSEFIQNVSSGSTKNSSLEWLYLAFNEITGTI 359
+L + + + +LK L S+N L +V + LE LYL N I
Sbjct: 289 RLVALNLYGQPIPTLKVLDLSHNHLL--------HVERNQPQFDRLENLYLDHNSIVTL- 339
Query: 360 PDLGGFPSLQILSLENN 376
L +L+ L+L +N
Sbjct: 340 -KLSTHHTLKNLTLSHN 355
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,069,572
Number of Sequences: 62578
Number of extensions: 979064
Number of successful extensions: 2893
Number of sequences better than 100.0: 86
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 66
Number of HSP's that attempted gapping in prelim test: 2276
Number of HSP's gapped (non-prelim): 466
length of query: 1025
length of database: 14,973,337
effective HSP length: 109
effective length of query: 916
effective length of database: 8,152,335
effective search space: 7467538860
effective search space used: 7467538860
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)