Query 047190
Match_columns 1025
No_of_seqs 949 out of 5926
Neff 9.4
Searched_HMMs 46136
Date Fri Mar 29 08:37:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047190.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047190hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 1.2E-69 2.6E-74 695.3 45.9 583 36-863 27-611 (968)
2 PLN00113 leucine-rich repeat r 100.0 1.3E-55 2.9E-60 565.5 39.1 516 239-863 69-588 (968)
3 KOG4194 Membrane glycoprotein 100.0 2.2E-36 4.9E-41 325.3 9.5 395 240-692 53-451 (873)
4 KOG4194 Membrane glycoprotein 100.0 1.3E-35 2.9E-40 319.4 9.7 373 313-836 79-452 (873)
5 KOG0472 Leucine-rich repeat pr 100.0 6.2E-38 1.3E-42 323.8 -10.0 454 267-841 47-544 (565)
6 KOG0472 Leucine-rich repeat pr 100.0 9.1E-38 2E-42 322.5 -10.5 483 185-788 44-541 (565)
7 KOG0618 Serine/threonine phosp 100.0 2.7E-34 5.8E-39 326.2 -4.5 246 533-834 240-487 (1081)
8 KOG0618 Serine/threonine phosp 100.0 3.1E-34 6.7E-39 325.7 -4.7 486 244-860 3-490 (1081)
9 KOG0444 Cytoskeletal regulator 100.0 2.4E-32 5.2E-37 295.4 -3.5 394 288-841 6-409 (1255)
10 KOG0444 Cytoskeletal regulator 100.0 1.3E-31 2.8E-36 289.7 -1.6 393 267-819 9-411 (1255)
11 KOG4237 Extracellular matrix p 99.9 6.4E-24 1.4E-28 220.5 -0.5 288 290-644 68-359 (498)
12 PLN03210 Resistant to P. syrin 99.9 1E-20 2.2E-25 243.0 25.3 324 281-691 580-904 (1153)
13 PRK15387 E3 ubiquitin-protein 99.9 3.3E-21 7.2E-26 228.7 16.6 261 465-841 203-463 (788)
14 PRK15387 E3 ubiquitin-protein 99.9 3.8E-21 8.2E-26 228.2 15.9 246 464-822 223-468 (788)
15 PLN03210 Resistant to P. syrin 99.8 4.1E-20 8.9E-25 237.4 24.4 158 306-499 552-715 (1153)
16 KOG4237 Extracellular matrix p 99.8 2.3E-22 4.9E-27 209.0 0.6 255 238-502 66-360 (498)
17 PRK15370 E3 ubiquitin-protein 99.8 7.1E-19 1.5E-23 210.7 12.5 229 532-837 197-429 (754)
18 PRK15370 E3 ubiquitin-protein 99.8 1.2E-18 2.7E-23 208.7 10.6 266 464-839 179-448 (754)
19 cd00116 LRR_RI Leucine-rich re 99.7 5.4E-18 1.2E-22 189.6 3.7 82 754-835 224-319 (319)
20 cd00116 LRR_RI Leucine-rich re 99.7 7.6E-18 1.6E-22 188.4 0.6 236 558-838 22-293 (319)
21 KOG0617 Ras suppressor protein 99.6 3.9E-17 8.6E-22 150.9 -4.5 126 560-690 34-160 (264)
22 KOG0617 Ras suppressor protein 99.6 5.4E-17 1.2E-21 150.0 -4.2 163 605-821 31-194 (264)
23 PLN03150 hypothetical protein; 99.6 6.8E-15 1.5E-19 176.5 11.0 117 753-869 420-538 (623)
24 PLN03150 hypothetical protein; 99.5 1.7E-13 3.7E-18 164.5 12.7 151 33-197 367-526 (623)
25 KOG0532 Leucine-rich repeat (L 99.2 4.5E-13 9.8E-18 146.5 -5.1 125 562-693 78-202 (722)
26 KOG0532 Leucine-rich repeat (L 99.2 1.5E-12 3.3E-17 142.4 -2.2 194 563-813 54-248 (722)
27 COG4886 Leucine-rich repeat (L 99.2 3.4E-11 7.4E-16 138.7 6.7 123 563-691 97-220 (394)
28 COG4886 Leucine-rich repeat (L 99.1 7.2E-11 1.6E-15 136.0 7.3 200 586-842 96-296 (394)
29 KOG3207 Beta-tubulin folding c 99.1 2.2E-11 4.8E-16 129.8 1.3 165 158-326 118-285 (505)
30 KOG1909 Ran GTPase-activating 99.0 6.1E-11 1.3E-15 123.3 2.2 256 104-402 22-310 (382)
31 KOG3207 Beta-tubulin folding c 99.0 5.9E-11 1.3E-15 126.6 1.3 211 135-357 119-340 (505)
32 PF14580 LRR_9: Leucine-rich r 98.9 9E-10 2E-14 108.3 4.8 122 560-686 20-146 (175)
33 KOG1909 Ran GTPase-activating 98.9 3.7E-10 8E-15 117.6 2.0 233 82-324 30-310 (382)
34 PF14580 LRR_9: Leucine-rich r 98.9 4.7E-10 1E-14 110.2 2.2 129 109-245 16-146 (175)
35 KOG1259 Nischarin, modulator o 98.9 7E-10 1.5E-14 112.3 1.9 133 630-840 283-416 (490)
36 KOG1259 Nischarin, modulator o 98.8 9.4E-10 2E-14 111.4 0.1 132 287-429 282-413 (490)
37 KOG4658 Apoptotic ATPase [Sign 98.7 5.2E-09 1.1E-13 128.4 4.5 109 108-219 567-675 (889)
38 PF13855 LRR_8: Leucine rich r 98.7 9.3E-09 2E-13 83.0 3.3 60 776-835 2-61 (61)
39 PF08263 LRRNT_2: Leucine rich 98.7 1.9E-08 4.1E-13 74.1 4.6 41 37-78 2-43 (43)
40 KOG0531 Protein phosphatase 1, 98.7 1.7E-09 3.7E-14 124.6 -2.5 197 110-325 70-268 (414)
41 KOG0531 Protein phosphatase 1, 98.7 3.1E-09 6.8E-14 122.4 -1.4 56 754-812 235-290 (414)
42 PF13855 LRR_8: Leucine rich r 98.6 2.2E-08 4.7E-13 80.8 3.4 60 752-811 2-61 (61)
43 KOG4658 Apoptotic ATPase [Sign 98.6 2.2E-08 4.8E-13 122.9 4.4 108 111-223 544-653 (889)
44 KOG2120 SCF ubiquitin ligase, 98.5 6.9E-09 1.5E-13 105.4 -2.6 60 162-223 186-245 (419)
45 KOG2120 SCF ubiquitin ligase, 98.5 6.4E-09 1.4E-13 105.7 -4.6 181 113-323 186-374 (419)
46 KOG1859 Leucine-rich repeat pr 98.4 1.2E-08 2.6E-13 115.2 -6.2 81 754-837 212-293 (1096)
47 KOG2982 Uncharacterized conser 98.3 2E-07 4.4E-12 94.9 1.5 90 160-252 44-134 (418)
48 KOG1859 Leucine-rich repeat pr 98.1 6.6E-08 1.4E-12 109.3 -6.4 126 290-428 165-292 (1096)
49 KOG4579 Leucine-rich repeat (L 98.1 1.2E-07 2.7E-12 85.6 -3.8 87 754-843 80-166 (177)
50 KOG2982 Uncharacterized conser 98.1 4.5E-07 9.7E-12 92.5 -0.5 183 239-429 71-263 (418)
51 COG5238 RNA1 Ran GTPase-activa 98.0 1.8E-06 3.9E-11 87.0 1.4 228 156-403 25-285 (388)
52 COG5238 RNA1 Ran GTPase-activa 97.9 5.1E-06 1.1E-10 83.9 3.1 93 108-200 26-134 (388)
53 KOG4579 Leucine-rich repeat (L 97.9 9.4E-07 2E-11 80.0 -2.0 82 608-692 54-135 (177)
54 KOG4341 F-box protein containi 97.8 2E-06 4.4E-11 92.1 -2.0 300 113-421 139-458 (483)
55 PRK15386 type III secretion pr 97.8 5.9E-05 1.3E-09 83.5 8.9 77 603-692 48-124 (426)
56 KOG2739 Leucine-rich acidic nu 97.7 1.9E-05 4.1E-10 80.4 2.3 118 100-220 31-151 (260)
57 KOG4341 F-box protein containi 97.6 1E-05 2.2E-10 86.9 -0.9 279 137-426 138-437 (483)
58 KOG3665 ZYG-1-like serine/thre 97.6 3.4E-05 7.4E-10 92.8 2.8 146 111-260 121-271 (699)
59 PF12799 LRR_4: Leucine Rich r 97.5 6.7E-05 1.4E-09 55.4 2.7 36 776-812 2-37 (44)
60 PF12799 LRR_4: Leucine Rich r 97.5 0.00013 2.8E-09 53.9 3.8 36 290-325 2-37 (44)
61 PRK15386 type III secretion pr 97.5 0.00046 9.9E-09 76.6 9.5 116 529-666 67-187 (426)
62 KOG1644 U2-associated snRNP A' 97.4 0.00012 2.6E-09 71.3 3.7 84 113-199 43-126 (233)
63 KOG1644 U2-associated snRNP A' 97.4 0.00024 5.3E-09 69.3 5.4 129 115-250 22-151 (233)
64 KOG3665 ZYG-1-like serine/thre 97.4 0.00013 2.9E-09 87.8 4.2 23 310-332 248-270 (699)
65 PF01582 TIR: TIR domain; Int 97.1 8.9E-06 1.9E-10 78.4 -8.3 68 927-998 2-81 (141)
66 KOG2739 Leucine-rich acidic nu 97.0 0.00026 5.5E-09 72.3 1.4 114 129-245 35-149 (260)
67 PF13306 LRR_5: Leucine rich r 96.8 0.0028 6.1E-08 59.9 6.5 101 558-664 11-111 (129)
68 PF13306 LRR_5: Leucine rich r 96.7 0.0041 8.8E-08 58.8 6.6 124 576-706 5-128 (129)
69 KOG2123 Uncharacterized conser 96.2 0.00022 4.8E-09 72.7 -5.2 83 159-245 39-123 (388)
70 KOG2123 Uncharacterized conser 95.8 0.00072 1.6E-08 69.1 -3.8 83 344-429 20-102 (388)
71 PF00560 LRR_1: Leucine Rich R 95.2 0.007 1.5E-07 37.1 0.6 18 801-819 2-19 (22)
72 KOG1947 Leucine rich repeat pr 95.0 0.0086 1.9E-07 71.0 1.1 116 109-225 185-308 (482)
73 KOG1947 Leucine rich repeat pr 95.0 0.012 2.7E-07 69.7 2.2 115 184-300 186-306 (482)
74 PF00560 LRR_1: Leucine Rich R 94.8 0.013 2.9E-07 35.9 1.0 20 777-797 2-21 (22)
75 KOG4308 LRR-containing protein 93.8 0.0011 2.4E-08 76.6 -9.8 61 345-405 235-305 (478)
76 KOG4308 LRR-containing protein 93.2 0.0036 7.8E-08 72.4 -6.9 36 344-379 263-303 (478)
77 PF13504 LRR_7: Leucine rich r 88.7 0.24 5.3E-06 28.1 1.1 13 632-644 2-14 (17)
78 PF13504 LRR_7: Leucine rich r 88.5 0.3 6.4E-06 27.7 1.4 15 290-304 2-16 (17)
79 smart00370 LRR Leucine-rich re 87.7 0.49 1.1E-05 30.2 2.2 22 630-652 1-22 (26)
80 smart00369 LRR_TYP Leucine-ric 87.7 0.49 1.1E-05 30.2 2.2 22 630-652 1-22 (26)
81 KOG3864 Uncharacterized conser 86.8 0.11 2.3E-06 51.4 -1.8 80 139-220 103-184 (221)
82 KOG0473 Leucine-rich repeat pr 85.8 0.052 1.1E-06 54.5 -4.6 81 82-172 42-122 (326)
83 KOG0473 Leucine-rich repeat pr 85.0 0.053 1.2E-06 54.4 -4.9 82 752-836 43-124 (326)
84 smart00255 TIR Toll - interleu 84.9 0.13 2.8E-06 49.3 -2.4 61 936-1000 12-83 (140)
85 smart00370 LRR Leucine-rich re 84.7 0.75 1.6E-05 29.3 2.0 16 799-814 2-17 (26)
86 smart00369 LRR_TYP Leucine-ric 84.7 0.75 1.6E-05 29.3 2.0 16 799-814 2-17 (26)
87 KOG3864 Uncharacterized conser 80.8 0.41 8.9E-06 47.5 -0.6 81 312-399 101-185 (221)
88 PF13516 LRR_6: Leucine Rich r 73.8 1.3 2.9E-05 27.6 0.5 15 631-645 2-16 (24)
89 smart00365 LRR_SD22 Leucine-ri 66.9 4.4 9.6E-05 26.0 1.7 14 799-812 2-15 (26)
90 KOG4242 Predicted myosin-I-bin 59.0 71 0.0015 36.4 10.2 32 344-375 355-389 (553)
91 smart00364 LRR_BAC Leucine-ric 58.1 6.5 0.00014 25.1 1.3 17 632-649 3-19 (26)
92 smart00368 LRR_RI Leucine rich 53.7 9.8 0.00021 24.8 1.7 13 800-812 3-15 (28)
93 KOG4242 Predicted myosin-I-bin 49.8 69 0.0015 36.5 8.3 115 239-356 354-481 (553)
94 KOG1187 Serine/threonine prote 48.3 3.8 8.3E-05 46.1 -1.5 23 979-1001 61-83 (361)
95 KOG3763 mRNA export factor TAP 42.0 15 0.00032 42.4 1.9 14 367-380 271-284 (585)
96 PF07172 GRP: Glycine rich pro 38.0 23 0.00051 31.0 2.1 19 1-20 1-19 (95)
97 TIGR00864 PCC polycystin catio 37.3 21 0.00045 49.5 2.4 33 781-813 1-33 (2740)
98 KOG3763 mRNA export factor TAP 35.4 26 0.00057 40.5 2.5 14 290-303 271-284 (585)
99 PF04478 Mid2: Mid2 like cell 34.6 20 0.00044 34.0 1.3 39 966-1004 84-122 (154)
100 PF08693 SKG6: Transmembrane a 27.7 62 0.0014 23.2 2.4 9 900-908 15-23 (40)
101 PF15102 TMEM154: TMEM154 prot 26.1 1E+02 0.0022 29.2 4.3 24 992-1015 102-125 (146)
102 TIGR00864 PCC polycystin catio 22.1 62 0.0013 45.3 2.9 32 613-644 1-32 (2740)
103 smart00367 LRR_CC Leucine-rich 20.7 46 0.001 21.0 0.7 10 162-171 3-12 (26)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.2e-69 Score=695.26 Aligned_cols=583 Identities=36% Similarity=0.543 Sum_probs=406.5
Q ss_pred CHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCcccceEecCCCCcEEEEECCCCCCCCCCcccccccccCcCCCCCc
Q 047190 36 LDEEKESLLAFKQGLIDESGILSSWGREDEKRNCCKWRGVRCSNKTGHVLGLDLRASSDSPVDALKGTINPSLLKLQHLT 115 (1025)
Q Consensus 36 ~~~~~~~ll~~k~~~~~~~~~l~~W~~~~~~~~~c~w~gv~C~~~~~~v~~L~L~~~~~~~~~~l~g~l~~~l~~l~~L~ 115 (1025)
.++|++||++||+++.+|.+.+.+|+ ...+||.|.||+|++ .++|+.|||++ +.+.|.+++.+..+++|+
T Consensus 27 ~~~~~~~l~~~~~~~~~~~~~~~~w~---~~~~~c~w~gv~c~~-~~~v~~L~L~~------~~i~~~~~~~~~~l~~L~ 96 (968)
T PLN00113 27 HAEELELLLSFKSSINDPLKYLSNWN---SSADVCLWQGITCNN-SSRVVSIDLSG------KNISGKISSAIFRLPYIQ 96 (968)
T ss_pred CHHHHHHHHHHHHhCCCCcccCCCCC---CCCCCCcCcceecCC-CCcEEEEEecC------CCccccCChHHhCCCCCC
Confidence 46899999999999988888889997 467899999999975 57999999998 678888888888888888
Q ss_pred EEEccCCCCCCCCCccccc-CcccccccccccccCCCCcchhccCCCCCCEEecccCCCCCCCCchhcccCCCCCeeecc
Q 047190 116 YLDLSWNNFSGSPIPEFIG-SLGKLSELALSSAQFAGPIPHQLGNLSKLQVLDLRFNNLFSSGNLDWLSYLSSLRYLDLA 194 (1025)
Q Consensus 116 ~L~Ls~n~l~~~~~p~~l~-~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~Ls~n~i~~~~~~~~l~~l~~L~~L~L~ 194 (1025)
+|+|++|.+.+. +|..+. .+++|++|+|++|++++.+|. +.+++|++|+|++|.+
T Consensus 97 ~L~Ls~n~~~~~-ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~--------------------- 152 (968)
T PLN00113 97 TINLSNNQLSGP-IPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNML--------------------- 152 (968)
T ss_pred EEECCCCccCCc-CChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcc---------------------
Confidence 888888888764 666544 777888888888877766663 3344455554444432
Q ss_pred CCcCCCCcchHHhhCCCCCCCEEEcCCCCCCCCCCCcccccccCCcccEEEccCCCCCCCCchhhhhcCCCCccEEEcCC
Q 047190 195 DCKLSKFSNWVQVLSNLRSLTNLYLGYCDLPPISTPSLLHINYSKSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGS 274 (1025)
Q Consensus 195 ~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~~~L~~L~Ls~ 274 (1025)
++. .+..++ ++ ++|++|++++|.+.+.+|..+.++.+ |++|++++
T Consensus 153 ----~~~--~p~~~~--------------------------~l-~~L~~L~L~~n~l~~~~p~~~~~l~~--L~~L~L~~ 197 (968)
T PLN00113 153 ----SGE--IPNDIG--------------------------SF-SSLKVLDLGGNVLVGKIPNSLTNLTS--LEFLTLAS 197 (968)
T ss_pred ----ccc--CChHHh--------------------------cC-CCCCEEECccCcccccCChhhhhCcC--CCeeeccC
Confidence 110 001111 11 44444444444444445555555555 55555555
Q ss_pred CCCCCCchhhhhCCCCCcEEEccCCCCCC-cchhhcCCCCccEEEeecCCCCCcchHHhhhcCCCCCCCCCCcEEEcccc
Q 047190 275 NQLHGSIPLAFGHMASLRHLDLLSNQLRE-VPKFLGNMSSLKRLVFSYNELRGELSEFIQNVSSGSTKNSSLEWLYLAFN 353 (1025)
Q Consensus 275 n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~-lp~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~n 353 (1025)
|.+.+.+|..++.+++|++|++++|.+.+ +|..++++++|++|++++|.+.+.+|..+
T Consensus 198 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l--------------------- 256 (968)
T PLN00113 198 NQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSL--------------------- 256 (968)
T ss_pred CCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhH---------------------
Confidence 55555555555555555555555555443 44444444444444444444444444444
Q ss_pred ccccccCCCCCCCCCcEEEeecccccCcccccccccCCcceeeccCcccccccchhhhcCCCCCcEEECCCCcccccccc
Q 047190 354 EITGTIPDLGGFPSLQILSLENNRLTGTISKSIGQLSKLELLLLSGNSLRGVISEALFSNLSSLDTLQLSDNSLTLKFSH 433 (1025)
Q Consensus 354 ~l~~~~p~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 433 (1025)
+.+++|++|++++|++++.+|..+..+++|++|++++|.+.+.+|.. +.++++|++|++++|.+.+
T Consensus 257 ---------~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~-~~~l~~L~~L~l~~n~~~~---- 322 (968)
T PLN00113 257 ---------GNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPEL-VIQLQNLEILHLFSNNFTG---- 322 (968)
T ss_pred ---------hCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChh-HcCCCCCcEEECCCCccCC----
Confidence 44444444444444444444444444445555555555444444332 3344444444444433322
Q ss_pred CCCCCcccceeeccCCCCCCCCchhhhcCCcccEEEccCCCCCCchhhhhhhccccceEEEccCccCCCCCCCccccccC
Q 047190 434 DWTPPFQLFNIFLGSCKIGPRFPKWLQSQNQTVALDVSNAGISDIVPDWFWDLTNQLYYLNLSNNEMKGKLPDLSRKFDS 513 (1025)
Q Consensus 434 ~~~~~~~L~~L~L~~~~l~~~~p~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~l~ 513 (1025)
..|.++..+++|+.|++++|.+.+..|..+..
T Consensus 323 --------------------~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~---------------------------- 354 (968)
T PLN00113 323 --------------------KIPVALTSLPRLQVLQLWSNKFSGEIPKNLGK---------------------------- 354 (968)
T ss_pred --------------------cCChhHhcCCCCCEEECcCCCCcCcCChHHhC----------------------------
Confidence 22333333333333333333333333322211
Q ss_pred CCCeeecccCcCccCCCCCCCCCceeeccCCcccccccccccccCCcccEEEccCccccccCCCcccCCCCCCEEEcCCC
Q 047190 514 YGPGIDVSSNQFDGPIPLLPPNVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNLLSGRLPDCWFQFDSLAILNLANN 593 (1025)
Q Consensus 514 ~~~~l~ls~n~l~g~~p~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N 593 (1025)
+++|+.|++++|.+++.+|..+..+++|+.|++++|
T Consensus 355 --------------------------------------------~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n 390 (968)
T PLN00113 355 --------------------------------------------HNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSN 390 (968)
T ss_pred --------------------------------------------CCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCC
Confidence 244677777777777777777777777888888888
Q ss_pred cccccCCcccccccCCCEEEcccCcccccCCccccCCCCccEEeCCCCcCccccChhhhhcCCCCcEEEeecCcCcccCc
Q 047190 594 SFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIP 673 (1025)
Q Consensus 594 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p 673 (1025)
++.+.+|..+..+++|+.|++++|++++.+|..|..+++|+.|++++|+++|.+|..+. .+++|++|+|++|++.+.+|
T Consensus 391 ~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~L~~n~~~~~~p 469 (968)
T PLN00113 391 SLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKW-DMPSLQMLSLARNKFFGGLP 469 (968)
T ss_pred EecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhc-cCCCCcEEECcCceeeeecC
Confidence 88777777777788888888888888877888888888888888888888887777766 58888888888888888777
Q ss_pred ccccccCcccEEEccccccccccCccccCccccccccccCcccccccccccccccccceeEeecccCCccceeeccccce
Q 047190 674 FQLCYLSHIQILDLSLNNISGIIPKCFHNFTAMTKEKSSNLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLI 753 (1025)
Q Consensus 674 ~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 753 (1025)
..+ ..++|+.|++++|++++.+|..+.++++|
T Consensus 470 ~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L----------------------------------------------- 501 (968)
T PLN00113 470 DSF-GSKRLENLDLSRNQFSGAVPRKLGSLSEL----------------------------------------------- 501 (968)
T ss_pred ccc-ccccceEEECcCCccCCccChhhhhhhcc-----------------------------------------------
Confidence 655 45789999999999998888888776666
Q ss_pred eEEEcccCCCCCcChhhHhhcccCCeEeccCccccccCCCCCCCCCCccEEeCCCCcCCCcCcccccCCCCCCEEECcCC
Q 047190 754 KIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSRNHFFGGIPSSLSRLRLLSVMDLSYN 833 (1025)
Q Consensus 754 ~~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~Ldls~N 833 (1025)
+.|+|++|++++.+|..++++++|++|+|++|.++|.+|..++.+++|+.|||++|+++|.+|..+..+++|+.||+++|
T Consensus 502 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N 581 (968)
T PLN00113 502 MQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHN 581 (968)
T ss_pred CEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCCCCCCcCCCCcCCCCCCCCCC
Q 047190 834 NFSGKIPKGTQLQRFGASTYAGNPELCGLP 863 (1025)
Q Consensus 834 ~l~g~ip~~~~~~~~~~~~~~gN~~lcg~~ 863 (1025)
+++|.+|..+++.++.+.+|.|||.+||.+
T Consensus 582 ~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~ 611 (968)
T PLN00113 582 HLHGSLPSTGAFLAINASAVAGNIDLCGGD 611 (968)
T ss_pred cceeeCCCcchhcccChhhhcCCccccCCc
Confidence 999999999999999999999999999864
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.3e-55 Score=565.51 Aligned_cols=516 Identities=32% Similarity=0.483 Sum_probs=384.4
Q ss_pred CcccEEEccCCCCCCCCchhhhhcCCCCccEEEcCCCCCCCCchhhhh-CCCCCcEEEccCCCCCC-cchhhcCCCCccE
Q 047190 239 KSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLHGSIPLAFG-HMASLRHLDLLSNQLRE-VPKFLGNMSSLKR 316 (1025)
Q Consensus 239 ~~L~~L~Ls~n~l~~~~~~~l~~l~~~~L~~L~Ls~n~l~~~~p~~~~-~l~~L~~L~Ls~n~l~~-lp~~l~~l~~L~~ 316 (1025)
.+++.|++++|.+.+.++..+..++. |+.|+|++|.+.+.+|..+. .+++|++|+|++|++++ +|. +.+++|++
T Consensus 69 ~~v~~L~L~~~~i~~~~~~~~~~l~~--L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~ 144 (968)
T PLN00113 69 SRVVSIDLSGKNISGKISSAIFRLPY--IQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLET 144 (968)
T ss_pred CcEEEEEecCCCccccCChHHhCCCC--CCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCE
Confidence 34555666666655555555555555 66666666666555554433 55666666666666554 443 33555666
Q ss_pred EEeecCCCCCcchHHhhhcCCCCCCCCCCcEEEccccccccccCC-CCCCCCCcEEEeecccccCcccccccccCCccee
Q 047190 317 LVFSYNELRGELSEFIQNVSSGSTKNSSLEWLYLAFNEITGTIPD-LGGFPSLQILSLENNRLTGTISKSIGQLSKLELL 395 (1025)
Q Consensus 317 L~Ls~n~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~l~~~~p~-l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 395 (1025)
|++++|.+.+.+|..+..++ +|++|+|++|.+.+.+|. ++++++|++|++++|.+++.+|..++.+++|++|
T Consensus 145 L~Ls~n~~~~~~p~~~~~l~-------~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 217 (968)
T PLN00113 145 LDLSNNMLSGEIPNDIGSFS-------SLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWI 217 (968)
T ss_pred EECcCCcccccCChHHhcCC-------CCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEE
Confidence 66666666655555555555 666666666665555554 5556666666666666666666666666666666
Q ss_pred eccCcccccccchhhhcCCCCCcEEECCCCccccccccCCCCCcccceeeccCCCCCCCCchhhhcCCcccEEEccCCCC
Q 047190 396 LLSGNSLRGVISEALFSNLSSLDTLQLSDNSLTLKFSHDWTPPFQLFNIFLGSCKIGPRFPKWLQSQNQTVALDVSNAGI 475 (1025)
Q Consensus 396 ~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~~~p~~l~~~~~L~~L~Ls~n~i 475 (1025)
++++|.+.+.+|.. ++++++|++|++++|.+.+..+..+..+.+|+.|++++|.+.+.+|.++.++++|+.|++++|.+
T Consensus 218 ~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l 296 (968)
T PLN00113 218 YLGYNNLSGEIPYE-IGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSL 296 (968)
T ss_pred ECcCCccCCcCChh-HhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCee
Confidence 66666666555543 55566666666666655555444555555555555555555555666666666666666666666
Q ss_pred CCchhhhhhhccccceEEEccCccCCCCCCCccccccCCCCeeecccCcCccCCCCCCCCCceeeccCCccccccccccc
Q 047190 476 SDIVPDWFWDLTNQLYYLNLSNNEMKGKLPDLSRKFDSYGPGIDVSSNQFDGPIPLLPPNVSSLNLSKNKFSGSISFLCS 555 (1025)
Q Consensus 476 ~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~l~~~~~l~ls~n~l~g~~p~~~~~L~~L~l~~n~l~~~~~~~~~ 555 (1025)
.+..|.++..+. +|++|++++|.+.+.+|. ..
T Consensus 297 ~~~~p~~~~~l~-~L~~L~l~~n~~~~~~~~----------------------------------------------~~- 328 (968)
T PLN00113 297 SGEIPELVIQLQ-NLEILHLFSNNFTGKIPV----------------------------------------------AL- 328 (968)
T ss_pred ccCCChhHcCCC-CCcEEECCCCccCCcCCh----------------------------------------------hH-
Confidence 666666655443 566666665555443321 11
Q ss_pred ccCCcccEEEccCccccccCCCcccCCCCCCEEEcCCCcccccCCcccccccCCCEEEcccCcccccCCccccCCCCccE
Q 047190 556 ISSHLLTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTL 635 (1025)
Q Consensus 556 ~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~ 635 (1025)
..+++|+.|++++|.+++.+|..+..+++|+.|++++|++++.+|..+..+.+|+.|++++|++.+.+|..+..+++|+.
T Consensus 329 ~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~ 408 (968)
T PLN00113 329 TSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRR 408 (968)
T ss_pred hcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCE
Confidence 12467899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCcCccccChhhhhcCCCCcEEEeecCcCcccCcccccccCcccEEEccccccccccCccccCccccccccccCcc
Q 047190 636 MDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPKCFHNFTAMTKEKSSNLS 715 (1025)
Q Consensus 636 L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~ 715 (1025)
|++++|+++|.+|..+. .+++|+.|++++|.+++.+|..+..+++|+.|++++|++.+.+|..++. +
T Consensus 409 L~L~~n~l~~~~p~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~-~----------- 475 (968)
T PLN00113 409 VRLQDNSFSGELPSEFT-KLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGS-K----------- 475 (968)
T ss_pred EECcCCEeeeECChhHh-cCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccccc-c-----------
Confidence 99999999999999887 7999999999999999999999999999999999999999988875531 2
Q ss_pred cccccccccccccccceeEeecccCCccceeeccccceeEEEcccCCCCCcChhhHhhcccCCeEeccCccccccCCCCC
Q 047190 716 IISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPRI 795 (1025)
Q Consensus 716 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~ 795 (1025)
.|+.||+++|++++.+|..+.+++.|+.|+|++|+++|.+|..+
T Consensus 476 ------------------------------------~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~ 519 (968)
T PLN00113 476 ------------------------------------RLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDEL 519 (968)
T ss_pred ------------------------------------cceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHH
Confidence 23889999999999999999999999999999999999999999
Q ss_pred CCCCCccEEeCCCCcCCCcCcccccCCCCCCEEECcCCcccccCCCC-CCCCCcCCCCcCCCCCCCCCC
Q 047190 796 GQLKSLDFLDLSRNHFFGGIPSSLSRLRLLSVMDLSYNNFSGKIPKG-TQLQRFGASTYAGNPELCGLP 863 (1025)
Q Consensus 796 ~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~Ldls~N~l~g~ip~~-~~~~~~~~~~~~gN~~lcg~~ 863 (1025)
+.+++|++|+|++|+++|.+|..+..+++|+.||+++|+++|.+|.. ..+..+....+.+|+..+..|
T Consensus 520 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p 588 (968)
T PLN00113 520 SSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLP 588 (968)
T ss_pred cCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCC
Confidence 99999999999999999999999999999999999999999999975 334445555577887665444
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=2.2e-36 Score=325.34 Aligned_cols=395 Identities=23% Similarity=0.238 Sum_probs=309.0
Q ss_pred cccEEEccCCCCCCCCchhhhhcCCCCccEEEcCCCCCCCCchhhhhCCCCCcEEEccCCCCCCcchhhcCCCCccEEEe
Q 047190 240 SLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLHGSIPLAFGHMASLRHLDLLSNQLREVPKFLGNMSSLKRLVF 319 (1025)
Q Consensus 240 ~L~~L~Ls~n~l~~~~~~~l~~l~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L 319 (1025)
.-..||.+++.+....-..+.......-+.|++++|.+....+..|.++++|+++++..|.++.+|...+...+|+.|+|
T Consensus 53 ~~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L 132 (873)
T KOG4194|consen 53 NTRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDL 132 (873)
T ss_pred CceeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEee
Confidence 44556666665543211111111111156799999999999999999999999999999999999987777788999999
Q ss_pred ecCCCCCcchHHhhhcCCCCCCCCCCcEEEcccccccccc-CCCCCCCCCcEEEeecccccCcccccccccCCcceeecc
Q 047190 320 SYNELRGELSEFIQNVSSGSTKNSSLEWLYLAFNEITGTI-PDLGGFPSLQILSLENNRLTGTISKSIGQLSKLELLLLS 398 (1025)
Q Consensus 320 s~n~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~l~~~~-p~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~ 398 (1025)
.+|.|+..-.+.+..++ .|+.|||+.|.|+... |.|..-.++++|+|++|+|+..-...|..+.+|..|.|+
T Consensus 133 ~~N~I~sv~se~L~~l~-------alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLs 205 (873)
T KOG4194|consen 133 RHNLISSVTSEELSALP-------ALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLS 205 (873)
T ss_pred eccccccccHHHHHhHh-------hhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecc
Confidence 99999998888888888 9999999999998432 237777899999999999998888889999999999999
Q ss_pred CcccccccchhhhcCCCCCcEEECCCCccccccccCCCCCcccceeeccCCCCCCCCchhhhcCCcccEEEccCCCCCCc
Q 047190 399 GNSLRGVISEALFSNLSSLDTLQLSDNSLTLKFSHDWTPPFQLFNIFLGSCKIGPRFPKWLQSQNQTVALDVSNAGISDI 478 (1025)
Q Consensus 399 ~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~~~p~~l~~~~~L~~L~Ls~n~i~~~ 478 (1025)
.|+++ .+|...|.++++|+.|+|..|.|.......|.++.+|+.|.+..|.+...-...|..+..++.|+|+.|++...
T Consensus 206 rNrit-tLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~v 284 (873)
T KOG4194|consen 206 RNRIT-TLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAV 284 (873)
T ss_pred cCccc-ccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhh
Confidence 99999 56666799999999999999999877677777888888888888888777777777788888888888887777
Q ss_pred hhhhhhhccccceEEEccCccCCCCCCCccccccCCCCeeecccCcCccCCCCCCCCCceeeccCCcccccccccccccC
Q 047190 479 VPDWFWDLTNQLYYLNLSNNEMKGKLPDLSRKFDSYGPGIDVSSNQFDGPIPLLPPNVSSLNLSKNKFSGSISFLCSISS 558 (1025)
Q Consensus 479 ~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~l~~~~~l~ls~n~l~g~~p~~~~~L~~L~l~~n~l~~~~~~~~~~~~ 558 (1025)
...|++++. .|+.|++|+|.|....++ .+. .+
T Consensus 285 n~g~lfgLt-~L~~L~lS~NaI~rih~d---------------------------------------------~Ws--ft 316 (873)
T KOG4194|consen 285 NEGWLFGLT-SLEQLDLSYNAIQRIHID---------------------------------------------SWS--FT 316 (873)
T ss_pred hcccccccc-hhhhhccchhhhheeecc---------------------------------------------hhh--hc
Confidence 777777766 577777777766522110 011 23
Q ss_pred CcccEEEccCccccccCCCcccCCCCCCEEEcCCCcccccCCcccccccCCCEEEcccCcccccCC---ccccCCCCccE
Q 047190 559 HLLTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLP---SFFMNGSQLTL 635 (1025)
Q Consensus 559 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p---~~~~~l~~L~~ 635 (1025)
++|++|+|++|+|+...+..|..+..|++|+|++|.+.......|..+++|+.|||++|.++..+. ..|.++++|+.
T Consensus 317 qkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~Lrk 396 (873)
T KOG4194|consen 317 QKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRK 396 (873)
T ss_pred ccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhh
Confidence 668888888888887777788888888888888888877767777788888888888888876554 35777888888
Q ss_pred EeCCCCcCccccChhhhhcCCCCcEEEeecCcCcccCcccccccCcccEEEcccccc
Q 047190 636 MDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNI 692 (1025)
Q Consensus 636 L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 692 (1025)
|++.+|++. .||...+.++++|++|+|.+|.|..+-|.+|..+ .|+.|.+..-.|
T Consensus 397 L~l~gNqlk-~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssf 451 (873)
T KOG4194|consen 397 LRLTGNQLK-SIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSF 451 (873)
T ss_pred eeecCceee-ecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcccce
Confidence 888888887 7887777788888888888888888888888877 777777655443
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=1.3e-35 Score=319.40 Aligned_cols=373 Identities=24% Similarity=0.252 Sum_probs=272.6
Q ss_pred CccEEEeecCCCCCcchHHhhhcCCCCCCCCCCcEEEccccccccccCCCCCCCC-CcEEEeecccccCcccccccccCC
Q 047190 313 SLKRLVFSYNELRGELSEFIQNVSSGSTKNSSLEWLYLAFNEITGTIPDLGGFPS-LQILSLENNRLTGTISKSIGQLSK 391 (1025)
Q Consensus 313 ~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~l~~~~p~l~~l~~-L~~L~L~~n~l~~~~p~~l~~l~~ 391 (1025)
.-+.|++++|.+....++.|.+++ +|+++++.+|.++ .+|.++.... |+.|+|.+|.|+..-.+.+..++.
T Consensus 79 ~t~~LdlsnNkl~~id~~~f~nl~-------nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~a 150 (873)
T KOG4194|consen 79 QTQTLDLSNNKLSHIDFEFFYNLP-------NLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPA 150 (873)
T ss_pred ceeeeeccccccccCcHHHHhcCC-------cceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhh
Confidence 456789999999988888888888 9999999999888 7787666554 999999999998887888888889
Q ss_pred cceeeccCcccccccchhhhcCCCCCcEEECCCCccccccccCCCCCcccceeeccCCCCCCCCchhhhcCCcccEEEcc
Q 047190 392 LELLLLSGNSLRGVISEALFSNLSSLDTLQLSDNSLTLKFSHDWTPPFQLFNIFLGSCKIGPRFPKWLQSQNQTVALDVS 471 (1025)
Q Consensus 392 L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~~~p~~l~~~~~L~~L~Ls 471 (1025)
|+.|||+.|.++ .++...|..-.++++|+|++|.|+......|..+ .+|..|.|+
T Consensus 151 lrslDLSrN~is-~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~l------------------------nsL~tlkLs 205 (873)
T KOG4194|consen 151 LRSLDLSRNLIS-EIPKPSFPAKVNIKKLNLASNRITTLETGHFDSL------------------------NSLLTLKLS 205 (873)
T ss_pred hhhhhhhhchhh-cccCCCCCCCCCceEEeecccccccccccccccc------------------------chheeeecc
Confidence 999999999888 5666567777788888888888776555555444 445555555
Q ss_pred CCCCCCchhhhhhhccccceEEEccCccCCCCCCCccccccCCCCeeecccCcCccCCCCCCCCCceeeccCCccccccc
Q 047190 472 NAGISDIVPDWFWDLTNQLYYLNLSNNEMKGKLPDLSRKFDSYGPGIDVSSNQFDGPIPLLPPNVSSLNLSKNKFSGSIS 551 (1025)
Q Consensus 472 ~n~i~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~l~~~~~l~ls~n~l~g~~p~~~~~L~~L~l~~n~l~~~~~ 551 (1025)
+|.|+...+..|..+. +|+.|+|..|+|.- +.
T Consensus 206 rNrittLp~r~Fk~L~-~L~~LdLnrN~iri-----------------------------------------------ve 237 (873)
T KOG4194|consen 206 RNRITTLPQRSFKRLP-KLESLDLNRNRIRI-----------------------------------------------VE 237 (873)
T ss_pred cCcccccCHHHhhhcc-hhhhhhccccceee-----------------------------------------------eh
Confidence 5555555555544433 45555555555430 01
Q ss_pred ccccccCCcccEEEccCccccccCCCcccCCCCCCEEEcCCCcccccCCcccccccCCCEEEcccCcccccCCccccCCC
Q 047190 552 FLCSISSHLLTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGS 631 (1025)
Q Consensus 552 ~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~ 631 (1025)
...+.++++|+.|.|..|.+...-.++|..+.++++|+|+.|++...-..++.++++|+.|++++|.|..+-++.+.-++
T Consensus 238 ~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Wsftq 317 (873)
T KOG4194|consen 238 GLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQ 317 (873)
T ss_pred hhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcc
Confidence 11122346788888888888877788888899999999999999887778888899999999999999988888899999
Q ss_pred CccEEeCCCCcCccccChhhhhcCCCCcEEEeecCcCcccCcccccccCcccEEEccccccccccCccccCccccccccc
Q 047190 632 QLTLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPKCFHNFTAMTKEKS 711 (1025)
Q Consensus 632 ~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~ 711 (1025)
+|++|+|++|+|+ .+++.-+..+..|++|+|++|++...-...|..+++|+.|||++|.++..+.+.-
T Consensus 318 kL~~LdLs~N~i~-~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa----------- 385 (873)
T KOG4194|consen 318 KLKELDLSSNRIT-RLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAA----------- 385 (873)
T ss_pred cceeEeccccccc-cCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecch-----------
Confidence 9999999999998 6666655578999999999999988777888999999999999999987765421
Q ss_pred cCcccccccccccccccccceeEeecccCCccceeeccccceeEEEcccCCCCCcChhhHhhcccCCeEeccCccccccC
Q 047190 712 SNLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQI 791 (1025)
Q Consensus 712 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~i 791 (1025)
..|..|++|+.|+|.+|+|....
T Consensus 386 ---------------------------------------------------------~~f~gl~~LrkL~l~gNqlk~I~ 408 (873)
T KOG4194|consen 386 ---------------------------------------------------------VAFNGLPSLRKLRLTGNQLKSIP 408 (873)
T ss_pred ---------------------------------------------------------hhhccchhhhheeecCceeeecc
Confidence 12233445555555555555555
Q ss_pred CCCCCCCCCccEEeCCCCcCCCcCcccccCCCCCCEEECcCCccc
Q 047190 792 TPRIGQLKSLDFLDLSRNHFFGGIPSSLSRLRLLSVMDLSYNNFS 836 (1025)
Q Consensus 792 p~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~Ldls~N~l~ 836 (1025)
..+|.++.+||.|||.+|.|-.+-|..|..+ .|+.|-+..-.|-
T Consensus 409 krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssfl 452 (873)
T KOG4194|consen 409 KRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSFL 452 (873)
T ss_pred hhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcccceE
Confidence 5556666666666666666665556666555 5555554444443
No 5
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=6.2e-38 Score=323.75 Aligned_cols=454 Identities=27% Similarity=0.358 Sum_probs=305.5
Q ss_pred ccEEEcCCCCCCCCchhhhhCCCCCcEEEccCCCCCCcchhhcCCCCccEEEeecCCCCCcchHHhhhcCCCCCCCCCCc
Q 047190 267 VDHIDLGSNQLHGSIPLAFGHMASLRHLDLLSNQLREVPKFLGNMSSLKRLVFSYNELRGELSEFIQNVSSGSTKNSSLE 346 (1025)
Q Consensus 267 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~~L~ 346 (1025)
++.+.+++|.+.. +.+.+.++..|.+|++++|++..+|+.++.+..++.+++++|++. .+|+.+..+. +|.
T Consensus 47 l~~lils~N~l~~-l~~dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~-------~l~ 117 (565)
T KOG0472|consen 47 LQKLILSHNDLEV-LREDLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLI-------SLV 117 (565)
T ss_pred hhhhhhccCchhh-ccHhhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHh-hccHHHhhhh-------hhh
Confidence 6777777777763 344566777778888888888888877888888888888888776 4555566666 778
Q ss_pred EEEccccccccccCCCCCCCCCcEEEeecccccCcccccccccCCcceeeccCcccccccchhhhcCCCCCcEEECCCCc
Q 047190 347 WLYLAFNEITGTIPDLGGFPSLQILSLENNRLTGTISKSIGQLSKLELLLLSGNSLRGVISEALFSNLSSLDTLQLSDNS 426 (1025)
Q Consensus 347 ~L~L~~n~l~~~~p~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~ 426 (1025)
.++.++|.+....++++.+..|+.++..+|+++ ..|..++.+.+|..+++.+|.+.. .|+.... ++.|++||...|-
T Consensus 118 ~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~-l~~~~i~-m~~L~~ld~~~N~ 194 (565)
T KOG0472|consen 118 KLDCSSNELKELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKA-LPENHIA-MKRLKHLDCNSNL 194 (565)
T ss_pred hhhccccceeecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhh-CCHHHHH-HHHHHhcccchhh
Confidence 888888887766666777888888888888877 567777777888888888888774 3443344 7788888877776
Q ss_pred cccccccCCCCCcccceeeccCCCCCCCCchhhhcCCcccEEEccCCCCCCchhhhhhhccccceEEEccCccCCCCCCC
Q 047190 427 LTLKFSHDWTPPFQLFNIFLGSCKIGPRFPKWLQSQNQTVALDVSNAGISDIVPDWFWDLTNQLYYLNLSNNEMKGKLPD 506 (1025)
Q Consensus 427 l~~~~~~~~~~~~~L~~L~L~~~~l~~~~p~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~ 506 (1025)
+. ..|...+.+.+|+.|++..|++. .+| .|.++..|+++.++.|.|... |.......+++..
T Consensus 195 L~-tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~~l-pae~~~~L~~l~v-------------- 256 (565)
T KOG0472|consen 195 LE-TLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIEML-PAEHLKHLNSLLV-------------- 256 (565)
T ss_pred hh-cCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHHhh-HHHHhccccccee--------------
Confidence 54 33444555555666666666553 233 566666666666666666543 2222222223444
Q ss_pred ccccccCCCCeeecccCcCccCCCCCCCCCceeeccCCcccccccccccccCCcccEEEccCccccccCCCcccCCCCCC
Q 047190 507 LSRKFDSYGPGIDVSSNQFDGPIPLLPPNVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNLLSGRLPDCWFQFDSLA 586 (1025)
Q Consensus 507 ~~~~~l~~~~~l~ls~n~l~g~~p~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 586 (1025)
||+..|+++.....+|. +.+|++||+|+|.|+ ..|..++++ .|+
T Consensus 257 --------------------------------LDLRdNklke~Pde~cl--LrsL~rLDlSNN~is-~Lp~sLgnl-hL~ 300 (565)
T KOG0472|consen 257 --------------------------------LDLRDNKLKEVPDEICL--LRSLERLDLSNNDIS-SLPYSLGNL-HLK 300 (565)
T ss_pred --------------------------------eeccccccccCchHHHH--hhhhhhhcccCCccc-cCCcccccc-eee
Confidence 44444444444444443 366888888888888 566778888 788
Q ss_pred EEEcCCCcccccC--------------------------------------Ccc---cccccCCCEEEcccCcccccCCc
Q 047190 587 ILNLANNSFFGEI--------------------------------------PDS---MSFLRSIGSLSLYNNSLSGGLPS 625 (1025)
Q Consensus 587 ~L~Ls~N~l~~~~--------------------------------------p~~---~~~l~~L~~L~L~~N~l~~~~p~ 625 (1025)
.|-+.+|.+...- +.. .....+.+.|++++-+++....+
T Consensus 301 ~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdE 380 (565)
T KOG0472|consen 301 FLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDE 380 (565)
T ss_pred ehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHH
Confidence 8888888763110 000 11133455566666666633333
Q ss_pred cccCC--CCccEEeCCCCcCccccChhhhhcCCCCcE-EEeecCcCcccCcccccccCcccEEEccccccccccCccccC
Q 047190 626 FFMNG--SQLTLMDLGKNGLSGEIPTWIGESLPNLVV-LSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPKCFHN 702 (1025)
Q Consensus 626 ~~~~l--~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~-L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~ 702 (1025)
.|..- .-.+..+++.|++. ++|..+.. +..+.. +.+++|.+ +.+|..++.+++|..|+|++|.+. .+|..++.
T Consensus 381 Vfea~~~~~Vt~VnfskNqL~-elPk~L~~-lkelvT~l~lsnn~i-sfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~ 456 (565)
T KOG0472|consen 381 VFEAAKSEIVTSVNFSKNQLC-ELPKRLVE-LKELVTDLVLSNNKI-SFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGS 456 (565)
T ss_pred HHHHhhhcceEEEecccchHh-hhhhhhHH-HHHHHHHHHhhcCcc-ccchHHHHhhhcceeeecccchhh-hcchhhhh
Confidence 33321 12566677777776 66666552 333333 34444444 366777777777777777777766 66666655
Q ss_pred ccccccccccCcccccccccccccccccceeEeecccCCccceeeccccceeEEEcccCCCCCcChhhHhhcccCCeEec
Q 047190 703 FTAMTKEKSSNLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNL 782 (1025)
Q Consensus 703 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~~~ip~~~~~l~~L~~L~L 782 (1025)
+..| +.||+|.|+|. .+|+.+-.+..++.+-.
T Consensus 457 lv~L-----------------------------------------------q~LnlS~NrFr-~lP~~~y~lq~lEtlla 488 (565)
T KOG0472|consen 457 LVRL-----------------------------------------------QTLNLSFNRFR-MLPECLYELQTLETLLA 488 (565)
T ss_pred hhhh-----------------------------------------------heecccccccc-cchHHHhhHHHHHHHHh
Confidence 5444 88999999886 67888888888888888
Q ss_pred cCccccccCCCCCCCCCCccEEeCCCCcCCCcCcccccCCCCCCEEECcCCcccccCCC
Q 047190 783 SNNNLTGQITPRIGQLKSLDFLDLSRNHFFGGIPSSLSRLRLLSVMDLSYNNFSGKIPK 841 (1025)
Q Consensus 783 s~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~Ldls~N~l~g~ip~ 841 (1025)
++|++....|+.+++|.+|..|||.+|.+. .||..+++|++|++|++++|+|. .|.
T Consensus 489 s~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr--~Pr 544 (565)
T KOG0472|consen 489 SNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR--QPR 544 (565)
T ss_pred ccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC--CCH
Confidence 889998777777999999999999999998 67889999999999999999998 554
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=9.1e-38 Score=322.52 Aligned_cols=483 Identities=25% Similarity=0.331 Sum_probs=305.3
Q ss_pred CCCCCeeeccCCcCCCCcchHHhhCCCCCCCEEEcCCCCCCCCCCCcccccccCCcccEEEccCCCCCCCCchhhhhcCC
Q 047190 185 LSSLRYLDLADCKLSKFSNWVQVLSNLRSLTNLYLGYCDLPPISTPSLLHINYSKSLEVIDLSNNYLTNSIYPWLFNVSS 264 (1025)
Q Consensus 185 l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~ 264 (1025)
-..|+.|++++|.++... ..+.++..|.+|++.+|.+...++ +++.. ..++.++.++|++. .+|+.+....+
T Consensus 44 qv~l~~lils~N~l~~l~---~dl~nL~~l~vl~~~~n~l~~lp~---aig~l-~~l~~l~vs~n~ls-~lp~~i~s~~~ 115 (565)
T KOG0472|consen 44 QVDLQKLILSHNDLEVLR---EDLKNLACLTVLNVHDNKLSQLPA---AIGEL-EALKSLNVSHNKLS-ELPEQIGSLIS 115 (565)
T ss_pred hcchhhhhhccCchhhcc---HhhhcccceeEEEeccchhhhCCH---HHHHH-HHHHHhhcccchHh-hccHHHhhhhh
Confidence 345666666666665542 346677777777777777776665 34444 67778888888876 47888888888
Q ss_pred CCccEEEcCCCCCCCCchhhhhCCCCCcEEEccCCCCCCcchhhcCCCCccEEEeecCCCCCcchHHhhhcCCCCCCCCC
Q 047190 265 NLVDHIDLGSNQLHGSIPLAFGHMASLRHLDLLSNQLREVPKFLGNMSSLKRLVFSYNELRGELSEFIQNVSSGSTKNSS 344 (1025)
Q Consensus 265 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~~ 344 (1025)
+.+++.++|.+. ..|+.++.+..|+.++..+|+++.+|+.+.++.+|..+++.+|.+....|+.+. +. .
T Consensus 116 --l~~l~~s~n~~~-el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~-m~-------~ 184 (565)
T KOG0472|consen 116 --LVKLDCSSNELK-ELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIA-MK-------R 184 (565)
T ss_pred --hhhhhcccccee-ecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchhhCCHHHHH-HH-------H
Confidence 888999999887 567778888899999999999999999999999999999999998877776665 66 8
Q ss_pred CcEEEccccccccccCCCCCCCCCcEEEeecccccCcccccccccCCcceeeccCcccccccchhhhcCCCCCcEEECCC
Q 047190 345 LEWLYLAFNEITGTIPDLGGFPSLQILSLENNRLTGTISKSIGQLSKLELLLLSGNSLRGVISEALFSNLSSLDTLQLSD 424 (1025)
Q Consensus 345 L~~L~L~~n~l~~~~p~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~ 424 (1025)
|++||...|.++...|+++.+.+|+.|++..|++. .+| +|.+|..|++|+++.|++. .+|.+...+++++.+||+.+
T Consensus 185 L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRd 261 (565)
T KOG0472|consen 185 LKHLDCNSNLLETLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRD 261 (565)
T ss_pred HHhcccchhhhhcCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccc
Confidence 99999999988866677999999999999999987 566 7889999999999999987 67777788999999999999
Q ss_pred CccccccccCCCCCcccceeeccCCCCCCCCchhhhcCCcccEEEccCCCCCCchhhhhhhccccceEEEccCccCCCCC
Q 047190 425 NSLTLKFSHDWTPPFQLFNIFLGSCKIGPRFPKWLQSQNQTVALDVSNAGISDIVPDWFWDLTNQLYYLNLSNNEMKGKL 504 (1025)
Q Consensus 425 n~l~~~~~~~~~~~~~L~~L~L~~~~l~~~~p~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~ 504 (1025)
|+++ ..|+.+.-+++|..||+|+|.|++..+ .+..+ .|+.|.+.+|.+...-
T Consensus 262 Nklk-------------------------e~Pde~clLrsL~rLDlSNN~is~Lp~-sLgnl--hL~~L~leGNPlrTiR 313 (565)
T KOG0472|consen 262 NKLK-------------------------EVPDEICLLRSLERLDLSNNDISSLPY-SLGNL--HLKFLALEGNPLRTIR 313 (565)
T ss_pred cccc-------------------------cCchHHHHhhhhhhhcccCCccccCCc-ccccc--eeeehhhcCCchHHHH
Confidence 9887 344445555555555555555554432 22222 3555555555443110
Q ss_pred CCccc----cccCCCC----eeecccC----cCccCCCCCCCCCceeeccCCcccccccccccccCCcccEEEccCcccc
Q 047190 505 PDLSR----KFDSYGP----GIDVSSN----QFDGPIPLLPPNVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNLLS 572 (1025)
Q Consensus 505 p~~~~----~~l~~~~----~l~ls~n----~l~g~~p~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~N~l~ 572 (1025)
.++.. ..+++.. .-.++.. .-.+..+.. ..+. .....+.+.|++++-+++
T Consensus 314 r~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~----------------~~~~--~~~~i~tkiL~~s~~qlt 375 (565)
T KOG0472|consen 314 REIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSE----------------SFPD--IYAIITTKILDVSDKQLT 375 (565)
T ss_pred HHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCC----------------cccc--hhhhhhhhhhcccccccc
Confidence 00000 0000000 0000000 000000000 0000 001123455666666665
Q ss_pred ccCCCcccCCCC---CCEEEcCCCcccccCCcccccccCCCEEEcccCcccccCCccccCCCCccEEeCCCCcCccccCh
Q 047190 573 GRLPDCWFQFDS---LAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGKNGLSGEIPT 649 (1025)
Q Consensus 573 ~~~p~~~~~l~~---L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~ 649 (1025)
.+|+....-.. ....+++.|++. .+|..+..+..+.+.-+..|+..+-+|..++.+++|..|+|++|.+. .+|.
T Consensus 376 -~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~ 452 (565)
T KOG0472|consen 376 -LVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLN-DLPE 452 (565)
T ss_pred -cCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhh-hcch
Confidence 34433222222 555666666665 45555555555544433333333355566666666666666666665 6666
Q ss_pred hhhhcCCCCcEEEeecCcCcccCcccccccCcccEEEccccccccccCccccCccccccccccCcccccccccccccccc
Q 047190 650 WIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPKCFHNFTAMTKEKSSNLSIISNYYYNLGLRGM 729 (1025)
Q Consensus 650 ~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 729 (1025)
.++ .+..|+.|+++.|+|. .+|..+..+..++.+-.++|++....|+.++++.+|
T Consensus 453 e~~-~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL----------------------- 507 (565)
T KOG0472|consen 453 EMG-SLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNL----------------------- 507 (565)
T ss_pred hhh-hhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhc-----------------------
Confidence 666 4666666666666665 556555555556666666666665555445444444
Q ss_pred cceeEeecccCCccceeeccccceeEEEcccCCCCCcChhhHhhcccCCeEeccCcccc
Q 047190 730 LMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLT 788 (1025)
Q Consensus 730 ~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~ 788 (1025)
++|||.+|.+. .||..++++++|++|+|++|.|+
T Consensus 508 ------------------------~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 508 ------------------------TTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred ------------------------ceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence 56666666664 56666777777777777777776
No 7
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.97 E-value=2.7e-34 Score=326.16 Aligned_cols=246 Identities=27% Similarity=0.354 Sum_probs=190.1
Q ss_pred CCCCceeeccCCcccccccccccccCCcccEEEccCccccccCCCcccCCCCCCEEEcCCCcccccCCcccccccCCCEE
Q 047190 533 PPNVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSL 612 (1025)
Q Consensus 533 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 612 (1025)
+.+++++++++|++++.....+ .+.+|+.++..+|+++ .+|..+...++|+.|.+..|.+. -+|.....+++|++|
T Consensus 240 p~nl~~~dis~n~l~~lp~wi~--~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tL 315 (1081)
T KOG0618|consen 240 PLNLQYLDISHNNLSNLPEWIG--ACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTL 315 (1081)
T ss_pred cccceeeecchhhhhcchHHHH--hcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeee
Confidence 5678888888888887664433 3678888888888886 67777888888888888888887 556667778888888
Q ss_pred EcccCcccccCCccccCCCC-ccEEeCCCCcCccccChhhhhcCCCCcEEEeecCcCcccCcccccccCcccEEEccccc
Q 047190 613 SLYNNSLSGGLPSFFMNGSQ-LTLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNN 691 (1025)
Q Consensus 613 ~L~~N~l~~~~p~~~~~l~~-L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 691 (1025)
+|..|++....+..|..... |+.|+.+.|++. ..|..-.+..+.|+.|++.+|.++...-..+.+..+|++|+|++|+
T Consensus 316 dL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~-~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNr 394 (1081)
T KOG0618|consen 316 DLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLS-TLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNR 394 (1081)
T ss_pred eehhccccccchHHHhhhhHHHHHHhhhhcccc-ccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccc
Confidence 88888887544444444444 778888888887 6675555567788889999999988888888888999999999998
Q ss_pred cccccCccccCccccccccccCcccccccccccccccccceeEeecccCCccceeeccccceeEEEcccCCCCCcChhhH
Q 047190 692 ISGIIPKCFHNFTAMTKEKSSNLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEI 771 (1025)
Q Consensus 692 l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~~~ip~~~ 771 (1025)
+......++.++..| +.|+||+|+|+ .+|+.+
T Consensus 395 L~~fpas~~~kle~L-----------------------------------------------eeL~LSGNkL~-~Lp~tv 426 (1081)
T KOG0618|consen 395 LNSFPASKLRKLEEL-----------------------------------------------EELNLSGNKLT-TLPDTV 426 (1081)
T ss_pred cccCCHHHHhchHHh-----------------------------------------------HHHhcccchhh-hhhHHH
Confidence 884444556555554 77888999987 567888
Q ss_pred hhcccCCeEeccCccccccCCCCCCCCCCccEEeCCCCcCCC-cCcccccCCCCCCEEECcCCc
Q 047190 772 MDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSRNHFFG-GIPSSLSRLRLLSVMDLSYNN 834 (1025)
Q Consensus 772 ~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g-~ip~~l~~l~~L~~Ldls~N~ 834 (1025)
.++..|++|..-+|++. ..| .+..+++|+.+|+|.|+|+. .+|..... +.|++||+++|.
T Consensus 427 a~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 427 ANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGNT 487 (1081)
T ss_pred HhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCC-cccceeeccCCc
Confidence 88899999988888887 445 78888899999999998884 34444443 788899999886
No 8
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.97 E-value=3.1e-34 Score=325.65 Aligned_cols=486 Identities=26% Similarity=0.306 Sum_probs=334.3
Q ss_pred EEccCCCCCCCCchhhhhcCCCCccEEEcCCCCCCCCchhhhhCCCCCcEEEccCCCCCCcchhhcCCCCccEEEeecCC
Q 047190 244 IDLSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLHGSIPLAFGHMASLRHLDLLSNQLREVPKFLGNMSSLKRLVFSYNE 323 (1025)
Q Consensus 244 L~Ls~n~l~~~~~~~l~~l~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~ 323 (1025)
+|++...+. .||..+..... ++.|+++.|.+....-+...+.-+|+.|++++|.+...|..+..+.+|+.|+++.|.
T Consensus 3 vd~s~~~l~-~ip~~i~~~~~--~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~ 79 (1081)
T KOG0618|consen 3 VDASDEQLE-LIPEQILNNEA--LQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNY 79 (1081)
T ss_pred cccccccCc-ccchhhccHHH--HHhhhccccccccCchHHhhheeeeEEeeccccccccCCchhhhHHHHhhcccchhh
Confidence 455555554 45665555555 677777777665433333444445777777777777777666666677777777666
Q ss_pred CCCcchHHhhhcCCCCCCCCCCcEEEccccccccccCCCCCCCCCcEEEeecccccCcccccccccCCcceeeccCcccc
Q 047190 324 LRGELSEFIQNVSSGSTKNSSLEWLYLAFNEITGTIPDLGGFPSLQILSLENNRLTGTISKSIGQLSKLELLLLSGNSLR 403 (1025)
Q Consensus 324 l~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~l~~~~p~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~ 403 (1025)
+... |.....+. +|+++.|.+|.+......+..+.+|+.|+++.|++. .+|..+..++.++.+..++|...
T Consensus 80 i~~v-p~s~~~~~-------~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~ 150 (1081)
T KOG0618|consen 80 IRSV-PSSCSNMR-------NLQYLNLKNNRLQSLPASISELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKI 150 (1081)
T ss_pred HhhC-chhhhhhh-------cchhheeccchhhcCchhHHhhhcccccccchhccC-CCchhHHhhhHHHHHhhhcchhh
Confidence 5532 23333333 566666665555522223555555555555555554 44555555555555555555211
Q ss_pred cccchhhhcCCCCCcEEECCCCccccccccCCCCCcccceeeccCCCCCCCCchhhhcCCcccEEEccCCCCCCchhhhh
Q 047190 404 GVISEALFSNLSSLDTLQLSDNSLTLKFSHDWTPPFQLFNIFLGSCKIGPRFPKWLQSQNQTVALDVSNAGISDIVPDWF 483 (1025)
Q Consensus 404 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~~~p~~l~~~~~L~~L~Ls~n~i~~~~~~~~ 483 (1025)
.. ++.. .++.+++..+.+.+.++..+..+.. .||+..|.+....-
T Consensus 151 ~~-----lg~~-------------------------~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~~~dl--- 195 (1081)
T KOG0618|consen 151 QR-----LGQT-------------------------SIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEMEVLDL--- 195 (1081)
T ss_pred hh-----hccc-------------------------cchhhhhhhhhcccchhcchhhhhe--eeecccchhhhhhh---
Confidence 11 1111 1444445555555555555555555 67888877762211
Q ss_pred hhccccceEEEccCccCCCCCCCccccccCCCCeeecccCcCccCCCCCCCCCceeeccCCcccccccccccccCCcccE
Q 047190 484 WDLTNQLYYLNLSNNEMKGKLPDLSRKFDSYGPGIDVSSNQFDGPIPLLPPNVSSLNLSKNKFSGSISFLCSISSHLLTY 563 (1025)
Q Consensus 484 ~~~~~~L~~L~Ls~N~l~~~~p~~~~~~l~~~~~l~ls~n~l~g~~p~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~ 563 (1025)
....+|+.+....|+++. +++ .-++++.|+.++|.++....... ..+|++
T Consensus 196 -s~~~~l~~l~c~rn~ls~---------------l~~-----------~g~~l~~L~a~~n~l~~~~~~p~---p~nl~~ 245 (1081)
T KOG0618|consen 196 -SNLANLEVLHCERNQLSE---------------LEI-----------SGPSLTALYADHNPLTTLDVHPV---PLNLQY 245 (1081)
T ss_pred -hhccchhhhhhhhcccce---------------EEe-----------cCcchheeeeccCcceeeccccc---ccccee
Confidence 112357777777776651 111 13678888999998874333222 267999
Q ss_pred EEccCccccccCCCcccCCCCCCEEEcCCCcccccCCcccccccCCCEEEcccCcccccCCccccCCCCccEEeCCCCcC
Q 047190 564 LDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGKNGL 643 (1025)
Q Consensus 564 L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l 643 (1025)
+++++|+++ .+|+.++.+.+|+.++..+|+++ .+|..+....+|+.|.+..|.+.. +|......++|++|+|..|+|
T Consensus 246 ~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~y-ip~~le~~~sL~tLdL~~N~L 322 (1081)
T KOG0618|consen 246 LDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELEY-IPPFLEGLKSLRTLDLQSNNL 322 (1081)
T ss_pred eecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhhh-CCCcccccceeeeeeehhccc
Confidence 999999999 56799999999999999999996 778888889999999999999984 666778899999999999999
Q ss_pred ccccChhhhhcCCC-CcEEEeecCcCcccCcccccccCcccEEEccccccccccCccccCccccccccccCccccccccc
Q 047190 644 SGEIPTWIGESLPN-LVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPKCFHNFTAMTKEKSSNLSIISNYYY 722 (1025)
Q Consensus 644 ~g~ip~~~~~~l~~-L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~ 722 (1025)
. .+|..++..+.. |+.|+.+.|++....-..=...+.|+.|.+.+|.++...-..+.++..
T Consensus 323 ~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~h----------------- 384 (1081)
T KOG0618|consen 323 P-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKH----------------- 384 (1081)
T ss_pred c-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccc-----------------
Confidence 8 888877655554 788888999887443222334678999999999999765544444444
Q ss_pred ccccccccceeEeecccCCccceeeccccceeEEEcccCCCCCcChhhHhhcccCCeEeccCccccccCCCCCCCCCCcc
Q 047190 723 NLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLD 802 (1025)
Q Consensus 723 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~ 802 (1025)
|++|+||+|+|.......+.++..|+.|+||+|+|+ .+|.++..+..|+
T Consensus 385 ------------------------------LKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~ 433 (1081)
T KOG0618|consen 385 ------------------------------LKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLH 433 (1081)
T ss_pred ------------------------------eeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhH
Confidence 499999999998777788999999999999999999 6789999999999
Q ss_pred EEeCCCCcCCCcCcccccCCCCCCEEECcCCccc-ccCCCCCCCCCcCCCCcCCCCCCC
Q 047190 803 FLDLSRNHFFGGIPSSLSRLRLLSVMDLSYNNFS-GKIPKGTQLQRFGASTYAGNPELC 860 (1025)
Q Consensus 803 ~LdLs~N~l~g~ip~~l~~l~~L~~Ldls~N~l~-g~ip~~~~~~~~~~~~~~gN~~lc 860 (1025)
+|...+|++.. .| .+..++.|+.+|+|.|+|+ +.+|..-...++....+.||+++-
T Consensus 434 tL~ahsN~l~~-fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l~ 490 (1081)
T KOG0618|consen 434 TLRAHSNQLLS-FP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTRLV 490 (1081)
T ss_pred HHhhcCCceee-ch-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCcccc
Confidence 99999999984 56 8999999999999999997 445543222344555689998743
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.96 E-value=2.4e-32 Score=295.41 Aligned_cols=394 Identities=26% Similarity=0.375 Sum_probs=251.5
Q ss_pred CCCCcEEEccCCCCCC--cchhhcCCCCccEEEeecCCCCCcchHHhhhcCCCCCCCCCCcEEEccccccccccCCCCCC
Q 047190 288 MASLRHLDLLSNQLRE--VPKFLGNMSSLKRLVFSYNELRGELSEFIQNVSSGSTKNSSLEWLYLAFNEITGTIPDLGGF 365 (1025)
Q Consensus 288 l~~L~~L~Ls~n~l~~--lp~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~l~~~~p~l~~l 365 (1025)
++-.+-+|+++|.+++ +|.....+++++.|.|...++. .+|+.++.+. +|++|.+++|++....-.+..+
T Consensus 6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lq-------kLEHLs~~HN~L~~vhGELs~L 77 (1255)
T KOG0444|consen 6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQ-------KLEHLSMAHNQLISVHGELSDL 77 (1255)
T ss_pred cceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHh-------hhhhhhhhhhhhHhhhhhhccc
Confidence 4456677888888875 7888888888888888777765 4667777766 7777777777776555556666
Q ss_pred CCCcEEEeecccccC-cccccccccCCcceeeccCcccccccchhhhcCCCCCcEEECCCCccccccccCCCCCccccee
Q 047190 366 PSLQILSLENNRLTG-TISKSIGQLSKLELLLLSGNSLRGVISEALFSNLSSLDTLQLSDNSLTLKFSHDWTPPFQLFNI 444 (1025)
Q Consensus 366 ~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L 444 (1025)
+.|+.+++.+|++.. -+|..+..+..|+.|||++|++. ..|
T Consensus 78 p~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP------------------------------------- 119 (1255)
T KOG0444|consen 78 PRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVP------------------------------------- 119 (1255)
T ss_pred hhhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcc-------------------------------------
Confidence 667777666666532 24555556666666666666655 233
Q ss_pred eccCCCCCCCCchhhhcCCcccEEEccCCCCCCchhhhhhhccccceEEEccCccCCCCCCCccccccCCCCeeecccCc
Q 047190 445 FLGSCKIGPRFPKWLQSQNQTVALDVSNAGISDIVPDWFWDLTNQLYYLNLSNNEMKGKLPDLSRKFDSYGPGIDVSSNQ 524 (1025)
Q Consensus 445 ~L~~~~l~~~~p~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~l~~~~~l~ls~n~ 524 (1025)
..+...+++..|++|+|+|..++...|..+. .|-+||||+|.+..-.|
T Consensus 120 ------------~~LE~AKn~iVLNLS~N~IetIPn~lfinLt-DLLfLDLS~NrLe~LPP------------------- 167 (1255)
T KOG0444|consen 120 ------------TNLEYAKNSIVLNLSYNNIETIPNSLFINLT-DLLFLDLSNNRLEMLPP------------------- 167 (1255)
T ss_pred ------------hhhhhhcCcEEEEcccCccccCCchHHHhhH-hHhhhccccchhhhcCH-------------------
Confidence 3333344444444455544444333333332 34444444444331111
Q ss_pred CccCCCCCCCCCceeeccCCcccccccccccccCCcccEEEccCccccccCCCcccCCCCCCEEEcCCCccc-ccCCccc
Q 047190 525 FDGPIPLLPPNVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFF-GEIPDSM 603 (1025)
Q Consensus 525 l~g~~p~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~-~~~p~~~ 603 (1025)
..- .+..|+.|+|++|.+...--..+..+++|++|.+++.+-+ ..+|.++
T Consensus 168 ---------------------------Q~R--RL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsl 218 (1255)
T KOG0444|consen 168 ---------------------------QIR--RLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSL 218 (1255)
T ss_pred ---------------------------HHH--HHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCch
Confidence 000 1244666666666654333334445677778888776533 3567777
Q ss_pred ccccCCCEEEcccCcccccCCccccCCCCccEEeCCCCcCccccChhhhhcCCCCcEEEeecCcCcccCcccccccCccc
Q 047190 604 SFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQ 683 (1025)
Q Consensus 604 ~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~ 683 (1025)
..+.+|..+|++.|.+. ..|+.+-++.+|+.|+||+|+|+ .+..... ...+|+.|+|+.|+++ .+|..+++++.|+
T Consensus 219 d~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~~-~W~~lEtLNlSrNQLt-~LP~avcKL~kL~ 294 (1255)
T KOG0444|consen 219 DDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEG-EWENLETLNLSRNQLT-VLPDAVCKLTKLT 294 (1255)
T ss_pred hhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee-eeeccHH-HHhhhhhhccccchhc-cchHHHhhhHHHH
Confidence 77788888888888877 67777777888888888888877 6665555 3677788888888877 6777888888888
Q ss_pred EEEcccccccc-ccCccccCccccccccccCcccccccccccccccccceeEeecccCCccceeeccccceeEEEcccCC
Q 047190 684 ILDLSLNNISG-IIPKCFHNFTAMTKEKSSNLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNK 762 (1025)
Q Consensus 684 ~L~Ls~N~l~~-~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~ 762 (1025)
.|.+.+|+++- -||+.++.+..| +.+..++|+
T Consensus 295 kLy~n~NkL~FeGiPSGIGKL~~L-----------------------------------------------evf~aanN~ 327 (1255)
T KOG0444|consen 295 KLYANNNKLTFEGIPSGIGKLIQL-----------------------------------------------EVFHAANNK 327 (1255)
T ss_pred HHHhccCcccccCCccchhhhhhh-----------------------------------------------HHHHhhccc
Confidence 88888887763 367767666665 445566666
Q ss_pred CCCcChhhHhhcccCCeEeccCccccccCCCCCCCCCCccEEeCCCCcCCCcCcccccCCCCCCEEECcCC-----cccc
Q 047190 763 LGGKVLEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSRNHFFGGIPSSLSRLRLLSVMDLSYN-----NFSG 837 (1025)
Q Consensus 763 l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~Ldls~N-----~l~g 837 (1025)
+. ..|+.++.+..|+.|.|++|++- ..|+.|.-|+.|+.|||..|.=--..|.--..-+.|+.-|+..- ++.|
T Consensus 328 LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnLVMPPKP~da~~~lefYNIDFSLq~QlrlAG 405 (1255)
T KOG0444|consen 328 LE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNLVMPPKPNDARKKLEFYNIDFSLQHQLRLAG 405 (1255)
T ss_pred cc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCccCCCCcchhhhcceeeecceehhhHHhhcc
Confidence 64 67888888888888888888887 57788888888888888888644333332222355665554432 3456
Q ss_pred cCCC
Q 047190 838 KIPK 841 (1025)
Q Consensus 838 ~ip~ 841 (1025)
..|.
T Consensus 406 ~~pa 409 (1255)
T KOG0444|consen 406 QMPA 409 (1255)
T ss_pred CCcc
Confidence 5553
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.96 E-value=1.3e-31 Score=289.75 Aligned_cols=393 Identities=23% Similarity=0.342 Sum_probs=259.3
Q ss_pred ccEEEcCCCCCC-CCchhhhhCCCCCcEEEccCCCCCCcchhhcCCCCccEEEeecCCCCCcchHHhhhcCCCCCCCCCC
Q 047190 267 VDHIDLGSNQLH-GSIPLAFGHMASLRHLDLLSNQLREVPKFLGNMSSLKRLVFSYNELRGELSEFIQNVSSGSTKNSSL 345 (1025)
Q Consensus 267 L~~L~Ls~n~l~-~~~p~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~~L 345 (1025)
++-+|+++|.++ +..|.....+++++.|.|...++..+|+.++.+.+|++|.+++|++.... ..+..++ .|
T Consensus 9 VrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vh-GELs~Lp-------~L 80 (1255)
T KOG0444|consen 9 VRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVH-GELSDLP-------RL 80 (1255)
T ss_pred eecccccCCcCCCCcCchhHHHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhh-hhhccch-------hh
Confidence 556677777777 45788888888888888888888888888888888888888888876332 2244444 88
Q ss_pred cEEEccccccc--cccCCCCCCCCCcEEEeecccccCcccccccccCCcceeeccCcccccccchhhhcCCCCCcEEECC
Q 047190 346 EWLYLAFNEIT--GTIPDLGGFPSLQILSLENNRLTGTISKSIGQLSKLELLLLSGNSLRGVISEALFSNLSSLDTLQLS 423 (1025)
Q Consensus 346 ~~L~L~~n~l~--~~~p~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls 423 (1025)
+.+.+.+|++. |..+++..+..|+.|||++|++. ..|..+...+++-.|+|++|+|. .||...|.+++.|-.|||+
T Consensus 81 Rsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS 158 (1255)
T KOG0444|consen 81 RSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLS 158 (1255)
T ss_pred HHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccc
Confidence 88888888774 45556888999999999999998 78888888899999999999998 6777788888888888888
Q ss_pred CCccccccccCCCCCcccceeeccCCCCCCCCchhhhcCCcccEEEccCCCCCCchhhhhhhccccceEEEccCccCCCC
Q 047190 424 DNSLTLKFSHDWTPPFQLFNIFLGSCKIGPRFPKWLQSQNQTVALDVSNAGISDIVPDWFWDLTNQLYYLNLSNNEMKGK 503 (1025)
Q Consensus 424 ~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~~~p~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ 503 (1025)
+|++. .+|..++.+..|++|++++|.+...--..+
T Consensus 159 ~NrLe-------------------------~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQL-------------------- 193 (1255)
T KOG0444|consen 159 NNRLE-------------------------MLPPQIRRLSMLQTLKLSNNPLNHFQLRQL-------------------- 193 (1255)
T ss_pred cchhh-------------------------hcCHHHHHHhhhhhhhcCCChhhHHHHhcC--------------------
Confidence 88775 344445555555555555554432110000
Q ss_pred CCCccccccCCCCeeecccCcCccCCCCCCCCCceeeccCCcccccccccccccCCcccEEEccCcccc-ccCCCcccCC
Q 047190 504 LPDLSRKFDSYGPGIDVSSNQFDGPIPLLPPNVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNLLS-GRLPDCWFQF 582 (1025)
Q Consensus 504 ~p~~~~~~l~~~~~l~ls~n~l~g~~p~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~N~l~-~~~p~~~~~l 582 (1025)
| .+++|++|.+++.+=+ ..+|.++..+
T Consensus 194 --------------------------P--------------------------smtsL~vLhms~TqRTl~N~Ptsld~l 221 (1255)
T KOG0444|consen 194 --------------------------P--------------------------SMTSLSVLHMSNTQRTLDNIPTSLDDL 221 (1255)
T ss_pred --------------------------c--------------------------cchhhhhhhcccccchhhcCCCchhhh
Confidence 0 0133444444443322 2355556666
Q ss_pred CCCCEEEcCCCcccccCCcccccccCCCEEEcccCcccccCCccccCCCCccEEeCCCCcCccccChhhhhcCCCCcEEE
Q 047190 583 DSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGKNGLSGEIPTWIGESLPNLVVLS 662 (1025)
Q Consensus 583 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~ 662 (1025)
.+|..+|+|.|++. .+|+++-.+++|+.|+|++|+|+. +........+|++|++|.|+++ .+|..+. .+++|+.|+
T Consensus 222 ~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~ite-L~~~~~~W~~lEtLNlSrNQLt-~LP~avc-KL~kL~kLy 297 (1255)
T KOG0444|consen 222 HNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKITE-LNMTEGEWENLETLNLSRNQLT-VLPDAVC-KLTKLTKLY 297 (1255)
T ss_pred hhhhhccccccCCC-cchHHHhhhhhhheeccCcCceee-eeccHHHHhhhhhhccccchhc-cchHHHh-hhHHHHHHH
Confidence 66666666666665 556666666666666666666652 2233344455666666666666 6666665 466666666
Q ss_pred eecCcCc-ccCcccccccCcccEEEccccccccccCccccCccccccccccCcccccccccccccccccceeEeecccCC
Q 047190 663 LRSNKFH-GNIPFQLCYLSHIQILDLSLNNISGIIPKCFHNFTAMTKEKSSNLSIISNYYYNLGLRGMLMPLIFFDTWKG 741 (1025)
Q Consensus 663 L~~N~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 741 (1025)
+.+|+++ .-+|..++++.+|+.+..++|.+. ..|..++.+..|
T Consensus 298 ~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL----------------------------------- 341 (1255)
T KOG0444|consen 298 ANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKL----------------------------------- 341 (1255)
T ss_pred hccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHH-----------------------------------
Confidence 6666654 235666666666666666666665 566666655555
Q ss_pred ccceeeccccceeEEEcccCCCCCcChhhHhhcccCCeEeccCccccccCCCCCCCCCCccEEeCCCC-----cCCCcCc
Q 047190 742 GQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSRN-----HFFGGIP 816 (1025)
Q Consensus 742 ~~~~~~~~~~~l~~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N-----~l~g~ip 816 (1025)
+.|.|++|++. ..|+.|.-++.|.+|||..|.=--..|.-=..-+.|+.-++..- +|-|..|
T Consensus 342 ------------~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnLVMPPKP~da~~~lefYNIDFSLq~QlrlAG~~p 408 (1255)
T KOG0444|consen 342 ------------QKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNLVMPPKPNDARKKLEFYNIDFSLQHQLRLAGQMP 408 (1255)
T ss_pred ------------HHhccccccee-echhhhhhcCCcceeeccCCcCccCCCCcchhhhcceeeecceehhhHHhhccCCc
Confidence 45566666664 46888888999999999999754444432222256666554432 4557666
Q ss_pred ccc
Q 047190 817 SSL 819 (1025)
Q Consensus 817 ~~l 819 (1025)
.+.
T Consensus 409 asv 411 (1255)
T KOG0444|consen 409 ASV 411 (1255)
T ss_pred ccc
Confidence 553
No 11
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.87 E-value=6.4e-24 Score=220.45 Aligned_cols=288 Identities=23% Similarity=0.236 Sum_probs=179.6
Q ss_pred CCcEEEccCCCCCCcc-hhhcCCCCccEEEeecCCCCCcchHHhhhcCCCCCCCCCCcEEEccc-cccccccCC--CCCC
Q 047190 290 SLRHLDLLSNQLREVP-KFLGNMSSLKRLVFSYNELRGELSEFIQNVSSGSTKNSSLEWLYLAF-NEITGTIPD--LGGF 365 (1025)
Q Consensus 290 ~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~-n~l~~~~p~--l~~l 365 (1025)
.-+.++|..|+|+.+| ..|+.+++|+.|||++|.|+.+.|..|..+. +|.+|-+.+ |+|+ .+|. |+++
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~-------~l~~Lvlyg~NkI~-~l~k~~F~gL 139 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLA-------SLLSLVLYGNNKIT-DLPKGAFGGL 139 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhH-------hhhHHHhhcCCchh-hhhhhHhhhH
Confidence 5667788888888866 5677788888888888888877777777777 666665555 6666 3443 7777
Q ss_pred CCCcEEEeecccccCcccccccccCCcceeeccCcccccccchhhhcCCCCCcEEECCCCccccccccCCCCCcccceee
Q 047190 366 PSLQILSLENNRLTGTISKSIGQLSKLELLLLSGNSLRGVISEALFSNLSSLDTLQLSDNSLTLKFSHDWTPPFQLFNIF 445 (1025)
Q Consensus 366 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~ 445 (1025)
.+|+.|.+.-|++.....+.|..+++|..|.+.+|.+. .++...|..+.+++.+.+..|++.....-.|..-
T Consensus 140 ~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~------- 211 (498)
T KOG4237|consen 140 SSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNPFICDCNLPWLAD------- 211 (498)
T ss_pred HHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhh-hhccccccchhccchHhhhcCccccccccchhhh-------
Confidence 77777777777777666667777777777777777776 4555556677777777776666432211111000
Q ss_pred ccCCCCCCCCchhhhcCCcccEEEccCCCCCCchhhhhhhccccceEEEccCccCCCCCCCccccccCCCCeeecccCcC
Q 047190 446 LGSCKIGPRFPKWLQSQNQTVALDVSNAGISDIVPDWFWDLTNQLYYLNLSNNEMKGKLPDLSRKFDSYGPGIDVSSNQF 525 (1025)
Q Consensus 446 L~~~~l~~~~p~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~l~~~~~l~ls~n~l 525 (1025)
.....|..++.........+.+..+..+.+..|....
T Consensus 212 -----~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~-------------------------------------- 248 (498)
T KOG4237|consen 212 -----DLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSL-------------------------------------- 248 (498)
T ss_pred -----HHhhchhhcccceecchHHHHHHHhcccchhhhhhhH--------------------------------------
Confidence 0000111111111111111222222222222221110
Q ss_pred ccCCCCCCCCCceeeccCCcccccccccccccCCcccEEEccCccccccCCCcccCCCCCCEEEcCCCcccccCCccccc
Q 047190 526 DGPIPLLPPNVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSF 605 (1025)
Q Consensus 526 ~g~~p~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 605 (1025)
.++..-..+.+...+..|..|+..++.|+.|+|++|+++++-+.+|.+...+++|.|..|++.......|.+
T Consensus 249 --------esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ 320 (498)
T KOG4237|consen 249 --------ESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQG 320 (498)
T ss_pred --------HhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhc
Confidence 001111112222333445566667788888888888888888888888888888888888887666677788
Q ss_pred ccCCCEEEcccCcccccCCccccCCCCccEEeCCCCcCc
Q 047190 606 LRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGKNGLS 644 (1025)
Q Consensus 606 l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 644 (1025)
+..|++|+|++|+|+...|.+|..+.+|.+|+|-.|.+.
T Consensus 321 ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~ 359 (498)
T KOG4237|consen 321 LSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFN 359 (498)
T ss_pred cccceeeeecCCeeEEEecccccccceeeeeehccCccc
Confidence 888888888888888888888888888888888777665
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.86 E-value=1e-20 Score=243.00 Aligned_cols=324 Identities=24% Similarity=0.291 Sum_probs=201.4
Q ss_pred chhhhhCCC-CCcEEEccCCCCCCcchhhcCCCCccEEEeecCCCCCcchHHhhhcCCCCCCCCCCcEEEcccccccccc
Q 047190 281 IPLAFGHMA-SLRHLDLLSNQLREVPKFLGNMSSLKRLVFSYNELRGELSEFIQNVSSGSTKNSSLEWLYLAFNEITGTI 359 (1025)
Q Consensus 281 ~p~~~~~l~-~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~l~~~~ 359 (1025)
+|..|..++ +|+.|++.++.++.+|..+ ...+|+.|++.+|.+.. +++.+..++ +|+.|+|+++...+.+
T Consensus 580 lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~-L~~~~~~l~-------~Lk~L~Ls~~~~l~~i 650 (1153)
T PLN03210 580 LPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEK-LWDGVHSLT-------GLRNIDLRGSKNLKEI 650 (1153)
T ss_pred cCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCccccc-cccccccCC-------CCCEEECCCCCCcCcC
Confidence 344444432 3566666665555555554 34556666666555442 222233333 5666666555444455
Q ss_pred CCCCCCCCCcEEEeecccccCcccccccccCCcceeeccCcccccccchhhhcCCCCCcEEECCCCccccccccCCCCCc
Q 047190 360 PDLGGFPSLQILSLENNRLTGTISKSIGQLSKLELLLLSGNSLRGVISEALFSNLSSLDTLQLSDNSLTLKFSHDWTPPF 439 (1025)
Q Consensus 360 p~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~ 439 (1025)
|.+..+++|++|++++|.....+|..+..+++|+.|++++|...+.+|.. .++++|+.|++++|
T Consensus 651 p~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~--i~l~sL~~L~Lsgc-------------- 714 (1153)
T PLN03210 651 PDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTG--INLKSLYRLNLSGC-------------- 714 (1153)
T ss_pred CccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCc--CCCCCCCEEeCCCC--------------
Confidence 55555556666666655544455555555555666666555433344432 14455555555544
Q ss_pred ccceeeccCCCCCCCCchhhhcCCcccEEEccCCCCCCchhhhhhhccccceEEEccCccCCCCCCCccccccCCCCeee
Q 047190 440 QLFNIFLGSCKIGPRFPKWLQSQNQTVALDVSNAGISDIVPDWFWDLTNQLYYLNLSNNEMKGKLPDLSRKFDSYGPGID 519 (1025)
Q Consensus 440 ~L~~L~L~~~~l~~~~p~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~l~~~~~l~ 519 (1025)
...+.+|.. ..+|+.|++++|.+... |..+ . .++|++|++.++....
T Consensus 715 ----------~~L~~~p~~---~~nL~~L~L~~n~i~~l-P~~~-~-l~~L~~L~l~~~~~~~----------------- 761 (1153)
T PLN03210 715 ----------SRLKSFPDI---STNISWLDLDETAIEEF-PSNL-R-LENLDELILCEMKSEK----------------- 761 (1153)
T ss_pred ----------CCccccccc---cCCcCeeecCCCccccc-cccc-c-ccccccccccccchhh-----------------
Confidence 433334432 34567777777776543 3222 1 2356666665433210
Q ss_pred cccCcCccCCCCCCCCCceeeccCCcccccccccccccCCcccEEEccCccccccCCCcccCCCCCCEEEcCCCcccccC
Q 047190 520 VSSNQFDGPIPLLPPNVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEI 599 (1025)
Q Consensus 520 ls~n~l~g~~p~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 599 (1025)
+.+.+.. ..+ ......++|+.|++++|...+.+|..++++++|+.|++++|...+.+
T Consensus 762 -----l~~~~~~-----------------l~~-~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~L 818 (1153)
T PLN03210 762 -----LWERVQP-----------------LTP-LMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETL 818 (1153)
T ss_pred -----ccccccc-----------------cch-hhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCee
Confidence 0000000 000 00111367899999999888889999999999999999998766677
Q ss_pred CcccccccCCCEEEcccCcccccCCccccCCCCccEEeCCCCcCccccChhhhhcCCCCcEEEeecCcCcccCccccccc
Q 047190 600 PDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYL 679 (1025)
Q Consensus 600 p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l 679 (1025)
|..+ .+++|+.|++++|.....+|.. .++|+.|+|++|.++ .+|.++. .+++|++|+|++|+-...+|..+..+
T Consensus 819 P~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~-~l~~L~~L~L~~C~~L~~l~~~~~~L 892 (1153)
T PLN03210 819 PTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIE-KFSNLSFLDMNGCNNLQRVSLNISKL 892 (1153)
T ss_pred CCCC-CccccCEEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHh-cCCCCCEEECCCCCCcCccCcccccc
Confidence 8776 6899999999998776666654 368999999999998 8999987 79999999999965555688888999
Q ss_pred CcccEEEccccc
Q 047190 680 SHIQILDLSLNN 691 (1025)
Q Consensus 680 ~~L~~L~Ls~N~ 691 (1025)
++|+.+++++|.
T Consensus 893 ~~L~~L~l~~C~ 904 (1153)
T PLN03210 893 KHLETVDFSDCG 904 (1153)
T ss_pred cCCCeeecCCCc
Confidence 999999999885
No 13
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.86 E-value=3.3e-21 Score=228.73 Aligned_cols=261 Identities=26% Similarity=0.328 Sum_probs=168.0
Q ss_pred ccEEEccCCCCCCchhhhhhhccccceEEEccCccCCCCCCCccccccCCCCeeecccCcCccCCCCCCCCCceeeccCC
Q 047190 465 TVALDVSNAGISDIVPDWFWDLTNQLYYLNLSNNEMKGKLPDLSRKFDSYGPGIDVSSNQFDGPIPLLPPNVSSLNLSKN 544 (1025)
Q Consensus 465 L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~l~~~~~l~ls~n~l~g~~p~~~~~L~~L~l~~n 544 (1025)
-..|++++++++.+ |..+. .+|+.|++++|+++. +|..+++|++|++++|
T Consensus 203 ~~~LdLs~~~LtsL-P~~l~---~~L~~L~L~~N~Lt~--------------------------LP~lp~~Lk~LdLs~N 252 (788)
T PRK15387 203 NAVLNVGESGLTTL-PDCLP---AHITTLVIPDNNLTS--------------------------LPALPPELRTLEVSGN 252 (788)
T ss_pred CcEEEcCCCCCCcC-Ccchh---cCCCEEEccCCcCCC--------------------------CCCCCCCCcEEEecCC
Confidence 34566666666643 33332 246666666665541 3334566777777777
Q ss_pred cccccccccccccCCcccEEEccCccccccCCCcccCCCCCCEEEcCCCcccccCCcccccccCCCEEEcccCcccccCC
Q 047190 545 KFSGSISFLCSISSHLLTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLP 624 (1025)
Q Consensus 545 ~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p 624 (1025)
+++.... . .++|+.|++++|.++ .+|.. ..+|+.|++++|+++. +|.. .++|+.|++++|++++ +|
T Consensus 253 ~LtsLP~-l----p~sL~~L~Ls~N~L~-~Lp~l---p~~L~~L~Ls~N~Lt~-LP~~---p~~L~~LdLS~N~L~~-Lp 318 (788)
T PRK15387 253 QLTSLPV-L----PPGLLELSIFSNPLT-HLPAL---PSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS-LP 318 (788)
T ss_pred ccCcccC-c----ccccceeeccCCchh-hhhhc---hhhcCEEECcCCcccc-cccc---ccccceeECCCCcccc-CC
Confidence 6664321 1 245777777777776 34432 2457777777777763 3432 3567777777777775 33
Q ss_pred ccccCCCCccEEeCCCCcCccccChhhhhcCCCCcEEEeecCcCcccCcccccccCcccEEEccccccccccCccccCcc
Q 047190 625 SFFMNGSQLTLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPKCFHNFT 704 (1025)
Q Consensus 625 ~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 704 (1025)
... .+|+.|++++|+++ .+|.. ..+|++|+|++|+|++ +|.. .++|+.|++++|.+++ +|...
T Consensus 319 ~lp---~~L~~L~Ls~N~L~-~LP~l----p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~-LP~l~---- 381 (788)
T PRK15387 319 ALP---SELCKLWAYNNQLT-SLPTL----PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPALP---- 381 (788)
T ss_pred CCc---ccccccccccCccc-ccccc----ccccceEecCCCccCC-CCCC---Ccccceehhhcccccc-Ccccc----
Confidence 322 35667777777776 56641 3467777777777774 4432 2456777777777773 44321
Q ss_pred ccccccccCcccccccccccccccccceeEeecccCCccceeeccccceeEEEcccCCCCCcChhhHhhcccCCeEeccC
Q 047190 705 AMTKEKSSNLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSN 784 (1025)
Q Consensus 705 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls~ 784 (1025)
..|+.|+|++|+|++ +|.. .+.|+.|++++
T Consensus 382 ----------------------------------------------~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~ 411 (788)
T PRK15387 382 ----------------------------------------------SGLKELIVSGNRLTS-LPVL---PSELKELMVSG 411 (788)
T ss_pred ----------------------------------------------cccceEEecCCcccC-CCCc---ccCCCEEEccC
Confidence 123678888888875 4433 35788888888
Q ss_pred ccccccCCCCCCCCCCccEEeCCCCcCCCcCcccccCCCCCCEEECcCCcccccCCC
Q 047190 785 NNLTGQITPRIGQLKSLDFLDLSRNHFFGGIPSSLSRLRLLSVMDLSYNNFSGKIPK 841 (1025)
Q Consensus 785 N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~Ldls~N~l~g~ip~ 841 (1025)
|+|++ +|... .+|+.|+|++|+|+ .+|..+.+++.|+.|++++|+|+|.+|.
T Consensus 412 N~Lss-IP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~ 463 (788)
T PRK15387 412 NRLTS-LPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ 463 (788)
T ss_pred CcCCC-CCcch---hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHH
Confidence 88885 56533 46778888998888 6788888888888999999999888775
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.85 E-value=3.8e-21 Score=228.22 Aligned_cols=246 Identities=24% Similarity=0.342 Sum_probs=172.9
Q ss_pred cccEEEccCCCCCCchhhhhhhccccceEEEccCccCCCCCCCccccccCCCCeeecccCcCccCCCCCCCCCceeeccC
Q 047190 464 QTVALDVSNAGISDIVPDWFWDLTNQLYYLNLSNNEMKGKLPDLSRKFDSYGPGIDVSSNQFDGPIPLLPPNVSSLNLSK 543 (1025)
Q Consensus 464 ~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~l~~~~~l~ls~n~l~g~~p~~~~~L~~L~l~~ 543 (1025)
+++.|++++|+++.+. . ..++|++|++++|+++. +|..+++|+.|++++
T Consensus 223 ~L~~L~L~~N~Lt~LP-~----lp~~Lk~LdLs~N~Lts--------------------------LP~lp~sL~~L~Ls~ 271 (788)
T PRK15387 223 HITTLVIPDNNLTSLP-A----LPPELRTLEVSGNQLTS--------------------------LPVLPPGLLELSIFS 271 (788)
T ss_pred CCCEEEccCCcCCCCC-C----CCCCCcEEEecCCccCc--------------------------ccCcccccceeeccC
Confidence 4566666666666532 1 23467777777776652 223345667777777
Q ss_pred CcccccccccccccCCcccEEEccCccccccCCCcccCCCCCCEEEcCCCcccccCCcccccccCCCEEEcccCcccccC
Q 047190 544 NKFSGSISFLCSISSHLLTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGL 623 (1025)
Q Consensus 544 n~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~ 623 (1025)
|.++.... . .+.|+.|++++|+++ .+|.. .++|+.|++++|++++ +|.. ..+|+.|++++|++++ +
T Consensus 272 N~L~~Lp~-l----p~~L~~L~Ls~N~Lt-~LP~~---p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~~-L 337 (788)
T PRK15387 272 NPLTHLPA-L----PSGLCKLWIFGNQLT-SLPVL---PPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLTS-L 337 (788)
T ss_pred Cchhhhhh-c----hhhcCEEECcCCccc-ccccc---ccccceeECCCCcccc-CCCC---cccccccccccCcccc-c
Confidence 76654322 1 145778888888887 34542 4678888888888875 3432 2467788888888874 4
Q ss_pred CccccCCCCccEEeCCCCcCccccChhhhhcCCCCcEEEeecCcCcccCcccccccCcccEEEccccccccccCccccCc
Q 047190 624 PSFFMNGSQLTLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPKCFHNF 703 (1025)
Q Consensus 624 p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l 703 (1025)
|.. ..+|+.|+|++|+|+ .+|.. .++|+.|++++|++++ +|.. ..+|+.|++++|+|++ +|...
T Consensus 338 P~l---p~~Lq~LdLS~N~Ls-~LP~l----p~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt~-LP~l~--- 401 (788)
T PRK15387 338 PTL---PSGLQELSVSDNQLA-SLPTL----PSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLTS-LPVLP--- 401 (788)
T ss_pred ccc---ccccceEecCCCccC-CCCCC----Ccccceehhhcccccc-Cccc---ccccceEEecCCcccC-CCCcc---
Confidence 432 247889999999998 67752 4578888999998884 5643 3578899999999884 45321
Q ss_pred cccccccccCcccccccccccccccccceeEeecccCCccceeeccccceeEEEcccCCCCCcChhhHhhcccCCeEecc
Q 047190 704 TAMTKEKSSNLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLS 783 (1025)
Q Consensus 704 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls 783 (1025)
+ .|+.||+|+|++++ +|... ..|+.|+++
T Consensus 402 s-----------------------------------------------~L~~LdLS~N~Lss-IP~l~---~~L~~L~Ls 430 (788)
T PRK15387 402 S-----------------------------------------------ELKELMVSGNRLTS-LPMLP---SGLLSLSVY 430 (788)
T ss_pred c-----------------------------------------------CCCEEEccCCcCCC-CCcch---hhhhhhhhc
Confidence 1 23778999999986 56543 467889999
Q ss_pred CccccccCCCCCCCCCCccEEeCCCCcCCCcCcccccCC
Q 047190 784 NNNLTGQITPRIGQLKSLDFLDLSRNHFFGGIPSSLSRL 822 (1025)
Q Consensus 784 ~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l 822 (1025)
+|+|+ .+|..++++++|+.|+|++|+|+|.+|..+..+
T Consensus 431 ~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~l 468 (788)
T PRK15387 431 RNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREI 468 (788)
T ss_pred cCccc-ccChHHhhccCCCeEECCCCCCCchHHHHHHHH
Confidence 99998 689999999999999999999999999887554
No 15
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.85 E-value=4.1e-20 Score=237.44 Aligned_cols=158 Identities=24% Similarity=0.263 Sum_probs=77.9
Q ss_pred hhhcCCCCccEEEeecCCC------CCcchHHhhhcCCCCCCCCCCcEEEccccccccccCCCCCCCCCcEEEeeccccc
Q 047190 306 KFLGNMSSLKRLVFSYNEL------RGELSEFIQNVSSGSTKNSSLEWLYLAFNEITGTIPDLGGFPSLQILSLENNRLT 379 (1025)
Q Consensus 306 ~~l~~l~~L~~L~Ls~n~l------~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~l~~~~p~l~~l~~L~~L~L~~n~l~ 379 (1025)
..|.++++|+.|.+..+.. ...+|+.+..++. +|+.|.+.++.+. .+|....+.+|++|++.+|++.
T Consensus 552 ~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~------~Lr~L~~~~~~l~-~lP~~f~~~~L~~L~L~~s~l~ 624 (1153)
T PLN03210 552 NAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPP------KLRLLRWDKYPLR-CMPSNFRPENLVKLQMQGSKLE 624 (1153)
T ss_pred HHHhcCccccEEEEecccccccccceeecCcchhhcCc------ccEEEEecCCCCC-CCCCcCCccCCcEEECcCcccc
Confidence 3455566666666654432 1122333333321 4555555555544 3333223455555555555554
Q ss_pred CcccccccccCCcceeeccCcccccccchhhhcCCCCCcEEECCCCccccccccCCCCCcccceeeccCCCCCCCCchhh
Q 047190 380 GTISKSIGQLSKLELLLLSGNSLRGVISEALFSNLSSLDTLQLSDNSLTLKFSHDWTPPFQLFNIFLGSCKIGPRFPKWL 459 (1025)
Q Consensus 380 ~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~~~p~~l 459 (1025)
.++..+..+++|+.|+|+++...+.+|. +..+++|++| ++.+|.....+|..+
T Consensus 625 -~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L------------------------~L~~c~~L~~lp~si 677 (1153)
T PLN03210 625 -KLWDGVHSLTGLRNIDLRGSKNLKEIPD--LSMATNLETL------------------------KLSDCSSLVELPSSI 677 (1153)
T ss_pred -ccccccccCCCCCEEECCCCCCcCcCCc--cccCCcccEE------------------------EecCCCCccccchhh
Confidence 3444445555555555555443333332 3444444444 444444444566667
Q ss_pred hcCCcccEEEccCCCCCCchhhhhhhccccceEEEccCcc
Q 047190 460 QSQNQTVALDVSNAGISDIVPDWFWDLTNQLYYLNLSNNE 499 (1025)
Q Consensus 460 ~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~N~ 499 (1025)
..+++|+.|++++|.....+|..+ ...+|++|++++|.
T Consensus 678 ~~L~~L~~L~L~~c~~L~~Lp~~i--~l~sL~~L~Lsgc~ 715 (1153)
T PLN03210 678 QYLNKLEDLDMSRCENLEILPTGI--NLKSLYRLNLSGCS 715 (1153)
T ss_pred hccCCCCEEeCCCCCCcCccCCcC--CCCCCCEEeCCCCC
Confidence 777777777777764433344332 12245555555553
No 16
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.84 E-value=2.3e-22 Score=209.01 Aligned_cols=255 Identities=24% Similarity=0.282 Sum_probs=205.2
Q ss_pred CCcccEEEccCCCCCCCCchhhhhcCCCCccEEEcCCCCCCCCchhhhhCCCCCcEEEccC-CCCCCcc-hhhcCCCCcc
Q 047190 238 SKSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLHGSIPLAFGHMASLRHLDLLS-NQLREVP-KFLGNMSSLK 315 (1025)
Q Consensus 238 ~~~L~~L~Ls~n~l~~~~~~~l~~l~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~-n~l~~lp-~~l~~l~~L~ 315 (1025)
++.-..++|..|.|+..-+..|..+.+ |+.|||++|+|+.+.|.+|.++.+|..|-+.+ |+|+.+| ..|+++..|+
T Consensus 66 P~~tveirLdqN~I~~iP~~aF~~l~~--LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slq 143 (498)
T KOG4237|consen 66 PPETVEIRLDQNQISSIPPGAFKTLHR--LRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQ 143 (498)
T ss_pred CCcceEEEeccCCcccCChhhccchhh--hceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHH
Confidence 367788889999988766667778888 99999999999988999999999888777766 8899888 5788899999
Q ss_pred EEEeecCCCCCcchHHhhhcCCCCCCCCCCcEEEccccccccccC-CCCCCCCCcEEEeeccccc------------Ccc
Q 047190 316 RLVFSYNELRGELSEFIQNVSSGSTKNSSLEWLYLAFNEITGTIP-DLGGFPSLQILSLENNRLT------------GTI 382 (1025)
Q Consensus 316 ~L~Ls~n~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~l~~~~p-~l~~l~~L~~L~L~~n~l~------------~~~ 382 (1025)
.|.+.-|++.....+.+..++ +|..|.+.+|.+...-. .+..+.+++.+.+..|.+- ...
T Consensus 144 rLllNan~i~Cir~~al~dL~-------~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~ 216 (498)
T KOG4237|consen 144 RLLLNANHINCIRQDALRDLP-------SLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMN 216 (498)
T ss_pred HHhcChhhhcchhHHHHHHhh-------hcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhc
Confidence 999999999888888888888 89999999998873333 2777888888888777621 111
Q ss_pred cccccccCC----------------------ccee---eccCcccccccchhhhcCCCCCcEEECCCCccccccccCCCC
Q 047190 383 SKSIGQLSK----------------------LELL---LLSGNSLRGVISEALFSNLSSLDTLQLSDNSLTLKFSHDWTP 437 (1025)
Q Consensus 383 p~~l~~l~~----------------------L~~L---~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 437 (1025)
|..++.... ++.+ ..+.+...+.-|...|+.+++|+.|++++|+++.+.+..|..
T Consensus 217 ~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~ 296 (498)
T KOG4237|consen 217 PIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEG 296 (498)
T ss_pred hhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcc
Confidence 222221111 1111 223333445667778999999999999999999999999999
Q ss_pred CcccceeeccCCCCCCCCchhhhcCCcccEEEccCCCCCCchhhhhhhccccceEEEccCccCCC
Q 047190 438 PFQLFNIFLGSCKIGPRFPKWLQSQNQTVALDVSNAGISDIVPDWFWDLTNQLYYLNLSNNEMKG 502 (1025)
Q Consensus 438 ~~~L~~L~L~~~~l~~~~p~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~N~l~~ 502 (1025)
...+++|+|..|++...-...|.++..|+.|+|.+|+|+...|..|.... .|..|++-.|.+..
T Consensus 297 ~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~-~l~~l~l~~Np~~C 360 (498)
T KOG4237|consen 297 AAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLF-SLSTLNLLSNPFNC 360 (498)
T ss_pred hhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccc-eeeeeehccCcccC
Confidence 99999999999999888888999999999999999999999999998877 79999999998764
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.78 E-value=7.1e-19 Score=210.71 Aligned_cols=229 Identities=23% Similarity=0.411 Sum_probs=154.8
Q ss_pred CCCCCceeeccCCcccccccccccccCCcccEEEccCccccccCCCcccCCCCCCEEEcCCCcccccCCcccccccCCCE
Q 047190 532 LPPNVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGS 611 (1025)
Q Consensus 532 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 611 (1025)
.++.++.|++++|+++...... .++|+.|++++|+++ .+|..+. .+|+.|+|++|++. .+|..+. .+|+.
T Consensus 197 Ip~~L~~L~Ls~N~LtsLP~~l----~~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~ 266 (754)
T PRK15370 197 IPEQITTLILDNNELKSLPENL----QGNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP--SALQS 266 (754)
T ss_pred cccCCcEEEecCCCCCcCChhh----ccCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh--CCCCE
Confidence 3456777777777777543322 246788888888877 4565443 46888888888877 5565553 57888
Q ss_pred EEcccCcccccCCccccCCCCccEEeCCCCcCccccChhhhhcCCCCcEEEeecCcCcccCcccccccCcccEEEccccc
Q 047190 612 LSLYNNSLSGGLPSFFMNGSQLTLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNN 691 (1025)
Q Consensus 612 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 691 (1025)
|++++|+++. +|..+. ++|+.|++++|+++ .+|..+. ++|+.|++++|+++. +|..+. ++|+.|++++|.
T Consensus 267 L~Ls~N~L~~-LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp---~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~ 336 (754)
T PRK15370 267 LDLFHNKISC-LPENLP--EELRYLSVYDNSIR-TLPAHLP---SGITHLNVQSNSLTA-LPETLP--PGLKTLEAGENA 336 (754)
T ss_pred EECcCCccCc-cccccC--CCCcEEECCCCccc-cCcccch---hhHHHHHhcCCcccc-CCcccc--ccceeccccCCc
Confidence 8888888873 555443 47888888888887 5665442 467788888888874 454432 578888888888
Q ss_pred cccccCccccCccccccccccCcccccccccccccccccceeEeecccCCccceeeccccceeEEEcccCCCCCcChhhH
Q 047190 692 ISGIIPKCFHNFTAMTKEKSSNLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEI 771 (1025)
Q Consensus 692 l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~~~ip~~~ 771 (1025)
+++ +|..+. + .|+.|+|++|+|+. +|..+
T Consensus 337 Lt~-LP~~l~--~-----------------------------------------------sL~~L~Ls~N~L~~-LP~~l 365 (754)
T PRK15370 337 LTS-LPASLP--P-----------------------------------------------ELQVLDVSKNQITV-LPETL 365 (754)
T ss_pred ccc-CChhhc--C-----------------------------------------------cccEEECCCCCCCc-CChhh
Confidence 774 454321 1 23778888888873 56555
Q ss_pred hhcccCCeEeccCccccccCCCCCCCCCCccEEeCCCCcCCCcCccccc----CCCCCCEEECcCCcccc
Q 047190 772 MDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSRNHFFGGIPSSLS----RLRLLSVMDLSYNNFSG 837 (1025)
Q Consensus 772 ~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~----~l~~L~~Ldls~N~l~g 837 (1025)
. +.|+.|+|++|+|++ +|..+. .+|+.||+++|+|+ .+|..+. .++.+..+++.+|+++.
T Consensus 366 p--~~L~~LdLs~N~Lt~-LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls~ 429 (754)
T PRK15370 366 P--PTITTLDVSRNALTN-LPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFSE 429 (754)
T ss_pred c--CCcCEEECCCCcCCC-CCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCccH
Confidence 3 578888888888884 555554 36888888888887 3454443 34777888888888863
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.76 E-value=1.2e-18 Score=208.65 Aligned_cols=266 Identities=26% Similarity=0.421 Sum_probs=185.6
Q ss_pred cccEEEccCCCCCCchhhhhhhccccceEEEccCccCCCCCCCccccccCCCCeeecccCcCccCCCCCCCCCceeeccC
Q 047190 464 QTVALDVSNAGISDIVPDWFWDLTNQLYYLNLSNNEMKGKLPDLSRKFDSYGPGIDVSSNQFDGPIPLLPPNVSSLNLSK 543 (1025)
Q Consensus 464 ~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~l~~~~~l~ls~n~l~g~~p~~~~~L~~L~l~~ 543 (1025)
+...|++++++++.+ |..+ .+.++.|++++|+++. +|. ..+.+|+.|++++
T Consensus 179 ~~~~L~L~~~~LtsL-P~~I---p~~L~~L~Ls~N~Lts-LP~------------------------~l~~nL~~L~Ls~ 229 (754)
T PRK15370 179 NKTELRLKILGLTTI-PACI---PEQITTLILDNNELKS-LPE------------------------NLQGNIKTLYANS 229 (754)
T ss_pred CceEEEeCCCCcCcC-Cccc---ccCCcEEEecCCCCCc-CCh------------------------hhccCCCEEECCC
Confidence 456788888877764 3322 2367777887777762 221 1235788888888
Q ss_pred CcccccccccccccCCcccEEEccCccccccCCCcccCCCCCCEEEcCCCcccccCCcccccccCCCEEEcccCcccccC
Q 047190 544 NKFSGSISFLCSISSHLLTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGL 623 (1025)
Q Consensus 544 n~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~ 623 (1025)
|+++...... ..+|+.|+|++|.+. .+|..+. ++|+.|++++|+++ .+|..+. .+|+.|++++|++++ +
T Consensus 230 N~LtsLP~~l----~~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-L 298 (754)
T PRK15370 230 NQLTSIPATL----PDTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRT-L 298 (754)
T ss_pred CccccCChhh----hccccEEECcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCcccc-C
Confidence 8877543222 246888999999888 5676654 57899999999888 4666554 589999999998885 4
Q ss_pred CccccCCCCccEEeCCCCcCccccChhhhhcCCCCcEEEeecCcCcccCcccccccCcccEEEccccccccccCccccCc
Q 047190 624 PSFFMNGSQLTLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPKCFHNF 703 (1025)
Q Consensus 624 p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l 703 (1025)
|..+. ++|+.|++++|+++ .+|..+ .++|+.|++++|.+++ +|..+. ++|+.|++++|+++ .+|..+.
T Consensus 299 P~~lp--~sL~~L~Ls~N~Lt-~LP~~l---~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp-- 366 (754)
T PRK15370 299 PAHLP--SGITHLNVQSNSLT-ALPETL---PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETLP-- 366 (754)
T ss_pred cccch--hhHHHHHhcCCccc-cCCccc---cccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhhc--
Confidence 54443 47888999999998 677654 3688999999999885 666554 68999999999887 4554331
Q ss_pred cccccccccCcccccccccccccccccceeEeecccCCccceeeccccceeEEEcccCCCCCcChhhHhhcccCCeEecc
Q 047190 704 TAMTKEKSSNLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLS 783 (1025)
Q Consensus 704 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls 783 (1025)
+ .|+.|+|++|+|+. +|..+. ..|+.|+++
T Consensus 367 ~-----------------------------------------------~L~~LdLs~N~Lt~-LP~~l~--~sL~~LdLs 396 (754)
T PRK15370 367 P-----------------------------------------------TITTLDVSRNALTN-LPENLP--AALQIMQAS 396 (754)
T ss_pred C-----------------------------------------------CcCEEECCCCcCCC-CCHhHH--HHHHHHhhc
Confidence 1 23789999999984 555554 368889999
Q ss_pred CccccccCCCC----CCCCCCccEEeCCCCcCCCcCcccccCCCCCCEEECcCCcccccC
Q 047190 784 NNNLTGQITPR----IGQLKSLDFLDLSRNHFFGGIPSSLSRLRLLSVMDLSYNNFSGKI 839 (1025)
Q Consensus 784 ~N~l~g~ip~~----~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~Ldls~N~l~g~i 839 (1025)
+|+|+ .+|.. ++.++.+..|+|.+|.++. ..+. .|+.| ++.+.+.|++
T Consensus 397 ~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls~---~tl~---~L~~L-l~s~~~~gp~ 448 (754)
T PRK15370 397 RNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFSE---RTIQ---NMQRL-MSSVGYQGPR 448 (754)
T ss_pred cCCcc-cCchhHHHHhhcCCCccEEEeeCCCccH---HHHH---HHHHh-hhcccccCCc
Confidence 99998 44544 3445788999999999883 3333 34444 4556666653
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.70 E-value=5.4e-18 Score=189.58 Aligned_cols=82 Identities=24% Similarity=0.323 Sum_probs=46.6
Q ss_pred eEEEcccCCCCCcChhhHhh-----cccCCeEeccCcccc----ccCCCCCCCCCCccEEeCCCCcCCCc----Cccccc
Q 047190 754 KIIDLSSNKLGGKVLEEIMD-----LVGLVALNLSNNNLT----GQITPRIGQLKSLDFLDLSRNHFFGG----IPSSLS 820 (1025)
Q Consensus 754 ~~LdLs~N~l~~~ip~~~~~-----l~~L~~L~Ls~N~l~----g~ip~~~~~l~~L~~LdLs~N~l~g~----ip~~l~ 820 (1025)
+.||+++|.+++.....+.. .+.|+.|++++|.++ ..+...+..+++|+++|+++|.++.. ....+.
T Consensus 224 ~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~ 303 (319)
T cd00116 224 EVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLL 303 (319)
T ss_pred CEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHh
Confidence 55666666665533333322 256677777777665 12233444556777777777777744 333333
Q ss_pred CC-CCCCEEECcCCcc
Q 047190 821 RL-RLLSVMDLSYNNF 835 (1025)
Q Consensus 821 ~l-~~L~~Ldls~N~l 835 (1025)
.. +.|+.+|+..|++
T Consensus 304 ~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 304 EPGNELESLWVKDDSF 319 (319)
T ss_pred hcCCchhhcccCCCCC
Confidence 34 5677777776654
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.67 E-value=7.6e-18 Score=188.39 Aligned_cols=236 Identities=25% Similarity=0.245 Sum_probs=166.6
Q ss_pred CCcccEEEccCcccccc----CCCcccCCCCCCEEEcCCCcccc------cCCcccccccCCCEEEcccCcccccCCccc
Q 047190 558 SHLLTYLDLSNNLLSGR----LPDCWFQFDSLAILNLANNSFFG------EIPDSMSFLRSIGSLSLYNNSLSGGLPSFF 627 (1025)
Q Consensus 558 ~~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~------~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~ 627 (1025)
...|+.|+++++.++.. ++..+...++|+.|+++++.+.+ .++..+..+++|+.|++++|.+.+..+..+
T Consensus 22 l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 101 (319)
T cd00116 22 LLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVL 101 (319)
T ss_pred HhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHH
Confidence 35578888888887533 44556667778888888887762 233456667788888888888876666655
Q ss_pred cCCCC---ccEEeCCCCcCccc----cChhhhhcC-CCCcEEEeecCcCccc----CcccccccCcccEEEccccccccc
Q 047190 628 MNGSQ---LTLMDLGKNGLSGE----IPTWIGESL-PNLVVLSLRSNKFHGN----IPFQLCYLSHIQILDLSLNNISGI 695 (1025)
Q Consensus 628 ~~l~~---L~~L~Ls~N~l~g~----ip~~~~~~l-~~L~~L~L~~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~ 695 (1025)
..+.. |+.|++++|++++. +...+. .+ ++|++|++++|.+++. ++..+..+++|++|++++|.+++.
T Consensus 102 ~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~-~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 180 (319)
T cd00116 102 ESLLRSSSLQELKLNNNGLGDRGLRLLAKGLK-DLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDA 180 (319)
T ss_pred HHHhccCcccEEEeeCCccchHHHHHHHHHHH-hCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchH
Confidence 55555 99999999988732 333344 35 7889999999998843 344566778899999999988852
Q ss_pred cCcccc-CccccccccccCcccccccccccccccccceeEeecccCCccceeeccccceeEEEcccCCCCCcC----hhh
Q 047190 696 IPKCFH-NFTAMTKEKSSNLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKV----LEE 770 (1025)
Q Consensus 696 ~p~~~~-~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~~~i----p~~ 770 (1025)
....+. .+. ..+.|+.|+|++|.+++.. +..
T Consensus 181 ~~~~l~~~l~--------------------------------------------~~~~L~~L~L~~n~i~~~~~~~l~~~ 216 (319)
T cd00116 181 GIRALAEGLK--------------------------------------------ANCNLEVLDLNNNGLTDEGASALAET 216 (319)
T ss_pred HHHHHHHHHH--------------------------------------------hCCCCCEEeccCCccChHHHHHHHHH
Confidence 111110 000 1134488999999988543 445
Q ss_pred HhhcccCCeEeccCccccccCCCCCC-----CCCCccEEeCCCCcCC----CcCcccccCCCCCCEEECcCCccccc
Q 047190 771 IMDLVGLVALNLSNNNLTGQITPRIG-----QLKSLDFLDLSRNHFF----GGIPSSLSRLRLLSVMDLSYNNFSGK 838 (1025)
Q Consensus 771 ~~~l~~L~~L~Ls~N~l~g~ip~~~~-----~l~~L~~LdLs~N~l~----g~ip~~l~~l~~L~~Ldls~N~l~g~ 838 (1025)
+..++.|++|++++|.+++.....+. ..+.|++|++++|.++ ..++..+..++.|+++|+++|+++..
T Consensus 217 ~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~ 293 (319)
T cd00116 217 LASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEE 293 (319)
T ss_pred hcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHH
Confidence 56778899999999999864333332 2479999999999998 33456677778999999999999854
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.58 E-value=3.9e-17 Score=150.92 Aligned_cols=126 Identities=33% Similarity=0.406 Sum_probs=54.6
Q ss_pred cccEEEccCccccccCCCcccCCCCCCEEEcCCCcccccCCcccccccCCCEEEcccCcccccCCccccCCCCccEEeCC
Q 047190 560 LLTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLG 639 (1025)
Q Consensus 560 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls 639 (1025)
..+.|.||+|+++ .+|..+..+.+|+.|++++|++. .+|..+..++.|+.|+++-|++. ..|..|+.++.|++|||.
T Consensus 34 ~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldlt 110 (264)
T KOG0617|consen 34 NITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLT 110 (264)
T ss_pred hhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhcc
Confidence 3444444555444 33444444444444444444444 33444444444444444444443 344444444444444444
Q ss_pred CCcCcc-ccChhhhhcCCCCcEEEeecCcCcccCcccccccCcccEEEcccc
Q 047190 640 KNGLSG-EIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLN 690 (1025)
Q Consensus 640 ~N~l~g-~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N 690 (1025)
+|.+.. .+|..++ .++.|+.|+|++|.+. .+|..++++++||.|.+++|
T Consensus 111 ynnl~e~~lpgnff-~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdn 160 (264)
T KOG0617|consen 111 YNNLNENSLPGNFF-YMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDN 160 (264)
T ss_pred ccccccccCCcchh-HHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccC
Confidence 444431 2333333 2344444444444443 33333444444444443333
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.58 E-value=5.4e-17 Score=150.02 Aligned_cols=163 Identities=27% Similarity=0.469 Sum_probs=102.4
Q ss_pred cccCCCEEEcccCcccccCCccccCCCCccEEeCCCCcCccccChhhhhcCCCCcEEEeecCcCcccCcccccccCcccE
Q 047190 605 FLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQI 684 (1025)
Q Consensus 605 ~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~ 684 (1025)
.+...+.|.|++|+++ .+|..+..+.+|+.|++.+|++. .+|..+. .+++|+.|+++-|++. ..|..|+.++.|+.
T Consensus 31 ~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~is-sl~klr~lnvgmnrl~-~lprgfgs~p~lev 106 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSIS-SLPKLRILNVGMNRLN-ILPRGFGSFPALEV 106 (264)
T ss_pred chhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhh-hchhhhheecchhhhh-cCccccCCCchhhh
Confidence 4566667777777777 34555677777777777777776 6777776 5777777777777776 56777777777777
Q ss_pred EEcccccccc-ccCccccCccccccccccCcccccccccccccccccceeEeecccCCccceeeccccceeEEEcccCCC
Q 047190 685 LDLSLNNISG-IIPKCFHNFTAMTKEKSSNLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKL 763 (1025)
Q Consensus 685 L~Ls~N~l~~-~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l 763 (1025)
|||..|+++. .+|..|..++.| +.|.|+.|.+
T Consensus 107 ldltynnl~e~~lpgnff~m~tl-----------------------------------------------ralyl~dndf 139 (264)
T KOG0617|consen 107 LDLTYNNLNENSLPGNFFYMTTL-----------------------------------------------RALYLGDNDF 139 (264)
T ss_pred hhccccccccccCCcchhHHHHH-----------------------------------------------HHHHhcCCCc
Confidence 7777777663 334433333322 4445555555
Q ss_pred CCcChhhHhhcccCCeEeccCccccccCCCCCCCCCCccEEeCCCCcCCCcCcccccC
Q 047190 764 GGKVLEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSRNHFFGGIPSSLSR 821 (1025)
Q Consensus 764 ~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~ 821 (1025)
. .+|..++++++|+.|.+..|.+- ..|..+|.+++|+.|.+.+|+++ .+|..+++
T Consensus 140 e-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlppel~~ 194 (264)
T KOG0617|consen 140 E-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELAN 194 (264)
T ss_pred c-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-ecChhhhh
Confidence 4 45556666666666666666665 45666666666666666666666 34444443
No 23
>PLN03150 hypothetical protein; Provisional
Probab=99.56 E-value=6.8e-15 Score=176.50 Aligned_cols=117 Identities=36% Similarity=0.624 Sum_probs=105.5
Q ss_pred eeEEEcccCCCCCcChhhHhhcccCCeEeccCccccccCCCCCCCCCCccEEeCCCCcCCCcCcccccCCCCCCEEECcC
Q 047190 753 IKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSRNHFFGGIPSSLSRLRLLSVMDLSY 832 (1025)
Q Consensus 753 l~~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~Ldls~ 832 (1025)
++.|+|++|.++|.+|..++.+++|+.|+|++|+++|.+|..++.+++|+.|||++|+++|.+|+.++++++|+.||+++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 58899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccCCCCC--CCCCcCCCCcCCCCCCCCCCCCCCCC
Q 047190 833 NNFSGKIPKGT--QLQRFGASTYAGNPELCGLPLPNKCL 869 (1025)
Q Consensus 833 N~l~g~ip~~~--~~~~~~~~~~~gN~~lcg~~~~~~C~ 869 (1025)
|+++|.+|..- .+.......+.||+++||.|....|.
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~ 538 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG 538 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence 99999999752 12223345689999999987666773
No 24
>PLN03150 hypothetical protein; Provisional
Probab=99.47 E-value=1.7e-13 Score=164.48 Aligned_cols=151 Identities=32% Similarity=0.474 Sum_probs=122.6
Q ss_pred CCCCHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCC----cccceEecC--CC--CcEEEEECCCCCCCCCCcccccc
Q 047190 33 ISCLDEEKESLLAFKQGLIDESGILSSWGREDEKRNCC----KWRGVRCSN--KT--GHVLGLDLRASSDSPVDALKGTI 104 (1025)
Q Consensus 33 ~~~~~~~~~~ll~~k~~~~~~~~~l~~W~~~~~~~~~c----~w~gv~C~~--~~--~~v~~L~L~~~~~~~~~~l~g~l 104 (1025)
..+.++|.+||+++|+++.++.. .+|. +..|| .|.||.|+. .. .+|+.|+|++ +.+.|.+
T Consensus 367 ~~t~~~~~~aL~~~k~~~~~~~~--~~W~----g~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~------n~L~g~i 434 (623)
T PLN03150 367 SKTLLEEVSALQTLKSSLGLPLR--FGWN----GDPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDN------QGLRGFI 434 (623)
T ss_pred cccCchHHHHHHHHHHhcCCccc--CCCC----CCCCCCcccccccceeeccCCCCceEEEEEECCC------CCccccC
Confidence 35678899999999999976542 4896 34443 799999953 22 2599999998 7899999
Q ss_pred cccCcCCCCCcEEEccCCCCCCCCCcccccCcccccccccccccCCCCcchhccCCCCCCEEecccCCCCCCCCchhccc
Q 047190 105 NPSLLKLQHLTYLDLSWNNFSGSPIPEFIGSLGKLSELALSSAQFAGPIPHQLGNLSKLQVLDLRFNNLFSSGNLDWLSY 184 (1025)
Q Consensus 105 ~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~Ls~n~i~~~~~~~~l~~ 184 (1025)
|..++++++|++|+|++|.+.+. +|..++.+++|++|+|++|+++|.+|..+++|++|++|+|++|++ ....+..+..
T Consensus 435 p~~i~~L~~L~~L~Ls~N~l~g~-iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l-~g~iP~~l~~ 512 (623)
T PLN03150 435 PNDISKLRHLQSINLSGNSIRGN-IPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSL-SGRVPAALGG 512 (623)
T ss_pred CHHHhCCCCCCEEECCCCcccCc-CChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcc-cccCChHHhh
Confidence 99999999999999999999986 999999999999999999999999999999999999999999986 3334444443
Q ss_pred -CCCCCeeeccCCc
Q 047190 185 -LSSLRYLDLADCK 197 (1025)
Q Consensus 185 -l~~L~~L~L~~n~ 197 (1025)
..++..+++.+|.
T Consensus 513 ~~~~~~~l~~~~N~ 526 (623)
T PLN03150 513 RLLHRASFNFTDNA 526 (623)
T ss_pred ccccCceEEecCCc
Confidence 2345566666553
No 25
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.21 E-value=4.5e-13 Score=146.50 Aligned_cols=125 Identities=33% Similarity=0.489 Sum_probs=67.6
Q ss_pred cEEEccCccccccCCCcccCCCCCCEEEcCCCcccccCCcccccccCCCEEEcccCcccccCCccccCCCCccEEeCCCC
Q 047190 562 TYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGKN 641 (1025)
Q Consensus 562 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N 641 (1025)
...|++.|++. ++|..++.+..|+.+.|++|.+. .+|..++++..|++|+|+.|+++ .+|..++.|+ |+.|-+++|
T Consensus 78 ~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNN 153 (722)
T KOG0532|consen 78 VFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNN 153 (722)
T ss_pred hhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecC
Confidence 44555555555 45555555555555555555554 44555555555555555555555 3444444443 555555555
Q ss_pred cCccccChhhhhcCCCCcEEEeecCcCcccCcccccccCcccEEEccccccc
Q 047190 642 GLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNIS 693 (1025)
Q Consensus 642 ~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 693 (1025)
+++ .+|+.++ .++.|..|+.+.|.+. .+|..++++.+|+.|.++.|++.
T Consensus 154 kl~-~lp~~ig-~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~ 202 (722)
T KOG0532|consen 154 KLT-SLPEEIG-LLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE 202 (722)
T ss_pred ccc-cCCcccc-cchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh
Confidence 555 5555555 4555555555555554 44555555555555555555555
No 26
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.19 E-value=1.5e-12 Score=142.43 Aligned_cols=194 Identities=27% Similarity=0.425 Sum_probs=147.9
Q ss_pred EEEccCccccccC-CCcccCCCCCCEEEcCCCcccccCCcccccccCCCEEEcccCcccccCCccccCCCCccEEeCCCC
Q 047190 563 YLDLSNNLLSGRL-PDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGKN 641 (1025)
Q Consensus 563 ~L~Ls~N~l~~~~-p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N 641 (1025)
.|.|++-+++... +.+=..+.--...||+.|++. .+|..+..+..|+.+.|+.|.+. .+|..+.++..|+.|||+.|
T Consensus 54 ~l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~N 131 (722)
T KOG0532|consen 54 RLLLSGRRLKEFPRGAASYDLTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSN 131 (722)
T ss_pred ccccccchhhcCCCccccccccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccc
Confidence 3445555554221 111133455567899999998 78899999999999999999998 68899999999999999999
Q ss_pred cCccccChhhhhcCCCCcEEEeecCcCcccCcccccccCcccEEEccccccccccCccccCccccccccccCcccccccc
Q 047190 642 GLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPKCFHNFTAMTKEKSSNLSIISNYY 721 (1025)
Q Consensus 642 ~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~ 721 (1025)
+++ .+|..++ .+ -|+.|-+++|+++ .+|..++.+..|..||.+.|.+. .+|..++.+.++
T Consensus 132 qlS-~lp~~lC-~l-pLkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~sl--------------- 191 (722)
T KOG0532|consen 132 QLS-HLPDGLC-DL-PLKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSL--------------- 191 (722)
T ss_pred hhh-cCChhhh-cC-cceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHH---------------
Confidence 999 9999998 35 4999999999998 78889999999999999999998 778888888777
Q ss_pred cccccccccceeEeecccCCccceeeccccceeEEEcccCCCCCcChhhHhhcccCCeEeccCccccccCCCCCCCCCCc
Q 047190 722 YNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSL 801 (1025)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L 801 (1025)
+.|.+..|++. ..|++++.| .|..||+|+|+++ .||-.|.+|+.|
T Consensus 192 --------------------------------r~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis-~iPv~fr~m~~L 236 (722)
T KOG0532|consen 192 --------------------------------RDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS-YLPVDFRKMRHL 236 (722)
T ss_pred --------------------------------HHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee-ecchhhhhhhhh
Confidence 34445555554 345555544 3666777777776 566677777777
Q ss_pred cEEeCCCCcCCC
Q 047190 802 DFLDLSRNHFFG 813 (1025)
Q Consensus 802 ~~LdLs~N~l~g 813 (1025)
++|-|.+|.|+.
T Consensus 237 q~l~LenNPLqS 248 (722)
T KOG0532|consen 237 QVLQLENNPLQS 248 (722)
T ss_pred eeeeeccCCCCC
Confidence 777777777663
No 27
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.15 E-value=3.4e-11 Score=138.66 Aligned_cols=123 Identities=34% Similarity=0.512 Sum_probs=66.9
Q ss_pred EEEccCccccccCCCcccCCCCCCEEEcCCCcccccCCccccccc-CCCEEEcccCcccccCCccccCCCCccEEeCCCC
Q 047190 563 YLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLR-SIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGKN 641 (1025)
Q Consensus 563 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~-~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N 641 (1025)
.+++..|.+...+ ..+..++.++.|++.+|.++ .++.....+. +|+.|++++|.+.. +|..+..+++|+.|++++|
T Consensus 97 ~l~~~~~~~~~~~-~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~~-l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLRSNI-SELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIES-LPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeeccccccccCc-hhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchhh-hhhhhhccccccccccCCc
Confidence 4555555553222 22333455666666666666 3334444442 66666666666652 3344566666666666666
Q ss_pred cCccccChhhhhcCCCCcEEEeecCcCcccCcccccccCcccEEEccccc
Q 047190 642 GLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNN 691 (1025)
Q Consensus 642 ~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 691 (1025)
+++ .+|.... .+++|+.|++++|++. .+|........|++|++++|+
T Consensus 174 ~l~-~l~~~~~-~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~ 220 (394)
T COG4886 174 DLS-DLPKLLS-NLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNS 220 (394)
T ss_pred hhh-hhhhhhh-hhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCc
Confidence 666 5555543 3566666666666665 344444444445566666554
No 28
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.12 E-value=7.2e-11 Score=135.95 Aligned_cols=200 Identities=34% Similarity=0.442 Sum_probs=160.3
Q ss_pred CEEEcCCCcccccCCcccccccCCCEEEcccCcccccCCccccCCC-CccEEeCCCCcCccccChhhhhcCCCCcEEEee
Q 047190 586 AILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGS-QLTLMDLGKNGLSGEIPTWIGESLPNLVVLSLR 664 (1025)
Q Consensus 586 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~-~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~ 664 (1025)
..++++.|.+...+ ..+..++.++.|++.+|.++. ++....... +|+.|++++|++. .+|..+. .+++|+.|+++
T Consensus 96 ~~l~~~~~~~~~~~-~~~~~~~~l~~L~l~~n~i~~-i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~-~l~~L~~L~l~ 171 (394)
T COG4886 96 PSLDLNLNRLRSNI-SELLELTNLTSLDLDNNNITD-IPPLIGLLKSNLKELDLSDNKIE-SLPSPLR-NLPNLKNLDLS 171 (394)
T ss_pred ceeeccccccccCc-hhhhcccceeEEecCCccccc-Cccccccchhhcccccccccchh-hhhhhhh-ccccccccccC
Confidence 46888888875433 344556889999999999995 455556664 9999999999998 8877777 79999999999
Q ss_pred cCcCcccCcccccccCcccEEEccccccccccCccccCccccccccccCcccccccccccccccccceeEeecccCCccc
Q 047190 665 SNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPKCFHNFTAMTKEKSSNLSIISNYYYNLGLRGMLMPLIFFDTWKGGQY 744 (1025)
Q Consensus 665 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 744 (1025)
+|++. .+|...+.++.|+.|++++|+++ .+|........
T Consensus 172 ~N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~--------------------------------------- 210 (394)
T COG4886 172 FNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSA--------------------------------------- 210 (394)
T ss_pred Cchhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhh---------------------------------------
Confidence 99998 55656668899999999999999 55544322222
Q ss_pred eeeccccceeEEEcccCCCCCcChhhHhhcccCCeEeccCccccccCCCCCCCCCCccEEeCCCCcCCCcCcccccCCCC
Q 047190 745 EYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSRNHFFGGIPSSLSRLRL 824 (1025)
Q Consensus 745 ~~~~~~~~l~~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~ 824 (1025)
++.+++++|.+. .++..+.++..+..|.+++|++... +..++.+++++.|++++|+++...+ ++.+..
T Consensus 211 --------L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~~-~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~ 278 (394)
T COG4886 211 --------LEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLEDL-PESIGNLSNLETLDLSNNQISSISS--LGSLTN 278 (394)
T ss_pred --------hhhhhhcCCcce-ecchhhhhcccccccccCCceeeec-cchhccccccceecccccccccccc--ccccCc
Confidence 367888888532 5677888999999999999998843 7778999999999999999996544 889999
Q ss_pred CCEEECcCCcccccCCCC
Q 047190 825 LSVMDLSYNNFSGKIPKG 842 (1025)
Q Consensus 825 L~~Ldls~N~l~g~ip~~ 842 (1025)
++.||+++|.++...|..
T Consensus 279 l~~L~~s~n~~~~~~~~~ 296 (394)
T COG4886 279 LRELDLSGNSLSNALPLI 296 (394)
T ss_pred cCEEeccCccccccchhh
Confidence 999999999999887764
No 29
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.09 E-value=2.2e-11 Score=129.75 Aligned_cols=165 Identities=22% Similarity=0.283 Sum_probs=115.3
Q ss_pred cCCCCCCEEecccCCCCCCCCchhcccCCCCCeeeccCCcCCCCcchHHhhCCCCCCCEEEcCCCCCCCCCCCccccccc
Q 047190 158 GNLSKLQVLDLRFNNLFSSGNLDWLSYLSSLRYLDLADCKLSKFSNWVQVLSNLRSLTNLYLGYCDLPPISTPSLLHINY 237 (1025)
Q Consensus 158 ~~L~~L~~L~Ls~n~i~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~ 237 (1025)
+++++|+...|.++.+...+.......|++++.|||+.|-+..+..+......+++|+.|+++.|.+......... . .
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~-~-~ 195 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTT-L-L 195 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccch-h-h
Confidence 5677888888887765433333567788999999999998888777778888899999999999987655443111 1 2
Q ss_pred CCcccEEEccCCCCCCCCchh-hhhcCCCCccEEEcCCCCCCCCchhhhhCCCCCcEEEccCCCCCCcc--hhhcCCCCc
Q 047190 238 SKSLEVIDLSNNYLTNSIYPW-LFNVSSNLVDHIDLGSNQLHGSIPLAFGHMASLRHLDLLSNQLREVP--KFLGNMSSL 314 (1025)
Q Consensus 238 ~~~L~~L~Ls~n~l~~~~~~~-l~~l~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~lp--~~l~~l~~L 314 (1025)
.+.|+.|.++.|.++.....+ +..+++ ++.|+|..|...........-++.|+.|||++|++...+ ...+.++.|
T Consensus 196 l~~lK~L~l~~CGls~k~V~~~~~~fPs--l~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L 273 (505)
T KOG3207|consen 196 LSHLKQLVLNSCGLSWKDVQWILLTFPS--LEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGL 273 (505)
T ss_pred hhhhheEEeccCCCCHHHHHHHHHhCCc--HHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccch
Confidence 377888888888887433332 234556 788888888543333444555677888888888777755 456677777
Q ss_pred cEEEeecCCCCC
Q 047190 315 KRLVFSYNELRG 326 (1025)
Q Consensus 315 ~~L~Ls~n~l~~ 326 (1025)
+.|+++.+.+..
T Consensus 274 ~~Lnls~tgi~s 285 (505)
T KOG3207|consen 274 NQLNLSSTGIAS 285 (505)
T ss_pred hhhhccccCcch
Confidence 777777776653
No 30
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.04 E-value=6.1e-11 Score=123.29 Aligned_cols=256 Identities=27% Similarity=0.316 Sum_probs=131.4
Q ss_pred ccccCcCCCCCcEEEccCCCCCCC---CCcccccCcccccccccccc---cCCCCcchhc-------cCCCCCCEEeccc
Q 047190 104 INPSLLKLQHLTYLDLSWNNFSGS---PIPEFIGSLGKLSELALSSA---QFAGPIPHQL-------GNLSKLQVLDLRF 170 (1025)
Q Consensus 104 l~~~l~~l~~L~~L~Ls~n~l~~~---~~p~~l~~l~~L~~L~Ls~n---~l~~~~p~~l-------~~L~~L~~L~Ls~ 170 (1025)
+-+.+.....+++++||+|.|... .+...+.+.++|+..++|+- +....+|+.+ -..++|++||||+
T Consensus 22 v~~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSD 101 (382)
T KOG1909|consen 22 VEEELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSD 101 (382)
T ss_pred HHHHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccc
Confidence 334566788999999999988642 13445666778888888764 2233455433 4556888888888
Q ss_pred CCCCCCCCc---hhcccCCCCCeeeccCCcCCCCcchHHhhCCCCCCCEEEcCCCCCCCCCCCcccccccCCcccEEEcc
Q 047190 171 NNLFSSGNL---DWLSYLSSLRYLDLADCKLSKFSNWVQVLSNLRSLTNLYLGYCDLPPISTPSLLHINYSKSLEVIDLS 247 (1025)
Q Consensus 171 n~i~~~~~~---~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~Ls 247 (1025)
|.+...+.. ..++.+..|++|+|.+|.+..... ..+++ -|.+|. .+. .....+.|+++...
T Consensus 102 NA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag--~~l~~--al~~l~--~~k----------k~~~~~~Lrv~i~~ 165 (382)
T KOG1909|consen 102 NAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAG--GRLGR--ALFELA--VNK----------KAASKPKLRVFICG 165 (382)
T ss_pred cccCccchHHHHHHHHhccCHHHHhhhcCCCChhHH--HHHHH--HHHHHH--HHh----------ccCCCcceEEEEee
Confidence 876332222 235566677777777766543211 11110 000000 000 00011556666666
Q ss_pred CCCCCCCCch----hhhhcCCCCccEEEcCCCCCCCC----chhhhhCCCCCcEEEccCCCCCC-----cchhhcCCCCc
Q 047190 248 NNYLTNSIYP----WLFNVSSNLVDHIDLGSNQLHGS----IPLAFGHMASLRHLDLLSNQLRE-----VPKFLGNMSSL 314 (1025)
Q Consensus 248 ~n~l~~~~~~----~l~~l~~~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~Ls~n~l~~-----lp~~l~~l~~L 314 (1025)
.|++...-.. .+...+. |+.+.++.|.|... +..++..+++|+.|||.+|.++. +...+..+++|
T Consensus 166 rNrlen~ga~~~A~~~~~~~~--leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L 243 (382)
T KOG1909|consen 166 RNRLENGGATALAEAFQSHPT--LEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHL 243 (382)
T ss_pred ccccccccHHHHHHHHHhccc--cceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchh
Confidence 6665432211 1222223 55555555555321 22345556666666666665543 23444555556
Q ss_pred cEEEeecCCCCCcchHHhhhcCCCCCCCCCCcEEEccccccccccCCCCCCCCCcEEEeecccccCc----ccccccccC
Q 047190 315 KRLVFSYNELRGELSEFIQNVSSGSTKNSSLEWLYLAFNEITGTIPDLGGFPSLQILSLENNRLTGT----ISKSIGQLS 390 (1025)
Q Consensus 315 ~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~l~~~~p~l~~l~~L~~L~L~~n~l~~~----~p~~l~~l~ 390 (1025)
+.|++++|.+.......+.+-- -...|+|++|.+.+|.|+.. +.......+
T Consensus 244 ~El~l~dcll~~~Ga~a~~~al-------------------------~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~ 298 (382)
T KOG1909|consen 244 RELNLGDCLLENEGAIAFVDAL-------------------------KESAPSLEVLELAGNEITRDAALALAACMAEKP 298 (382)
T ss_pred eeecccccccccccHHHHHHHH-------------------------hccCCCCceeccCcchhHHHHHHHHHHHHhcch
Confidence 6666666655544433332211 12244555555555555422 112233456
Q ss_pred CcceeeccCccc
Q 047190 391 KLELLLLSGNSL 402 (1025)
Q Consensus 391 ~L~~L~L~~N~l 402 (1025)
.|+.|+|++|.+
T Consensus 299 dL~kLnLngN~l 310 (382)
T KOG1909|consen 299 DLEKLNLNGNRL 310 (382)
T ss_pred hhHHhcCCcccc
Confidence 677777777776
No 31
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=5.9e-11 Score=126.57 Aligned_cols=211 Identities=23% Similarity=0.260 Sum_probs=97.0
Q ss_pred CcccccccccccccCCCCcc--hhccCCCCCCEEecccCCCCCCC-CchhcccCCCCCeeeccCCcCCCCcchHHhhCCC
Q 047190 135 SLGKLSELALSSAQFAGPIP--HQLGNLSKLQVLDLRFNNLFSSG-NLDWLSYLSSLRYLDLADCKLSKFSNWVQVLSNL 211 (1025)
Q Consensus 135 ~l~~L~~L~Ls~n~l~~~~p--~~l~~L~~L~~L~Ls~n~i~~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l 211 (1025)
++.+|+...|.++.+.. .+ .....|++++.||||+|-+..-. .......+++|+.|+|+.|++....+ ...-..+
T Consensus 119 n~kkL~~IsLdn~~V~~-~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~-s~~~~~l 196 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVED-AGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFIS-SNTTLLL 196 (505)
T ss_pred hHHhhhheeecCccccc-cchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCcc-ccchhhh
Confidence 34445555555444431 11 23344555555555555321111 11223445555555555555433211 0111134
Q ss_pred CCCCEEEcCCCCCCCCCCCcccccccCCcccEEEccCCCCCCCCchhhhhcCCCCccEEEcCCCCCCCCc-hhhhhCCCC
Q 047190 212 RSLTNLYLGYCDLPPISTPSLLHINYSKSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLHGSI-PLAFGHMAS 290 (1025)
Q Consensus 212 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~~~L~~L~Ls~n~l~~~~-p~~~~~l~~ 290 (1025)
+.|+.|.|+.|.++.-.-. .....+ |+|+.|+|..|............+.. |+.|||++|++-... -...+.++.
T Consensus 197 ~~lK~L~l~~CGls~k~V~-~~~~~f-Psl~~L~L~~N~~~~~~~~~~~i~~~--L~~LdLs~N~li~~~~~~~~~~l~~ 272 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDVQ-WILLTF-PSLEVLYLEANEIILIKATSTKILQT--LQELDLSNNNLIDFDQGYKVGTLPG 272 (505)
T ss_pred hhhheEEeccCCCCHHHHH-HHHHhC-CcHHHhhhhcccccceecchhhhhhH--HhhccccCCcccccccccccccccc
Confidence 5555555555555421110 011122 55666666655322111111122223 666666666654321 123456677
Q ss_pred CcEEEccCCCCCC--cchh-----hcCCCCccEEEeecCCCCCcchHHhhhcCCCCCCCCCCcEEEcccccccc
Q 047190 291 LRHLDLLSNQLRE--VPKF-----LGNMSSLKRLVFSYNELRGELSEFIQNVSSGSTKNSSLEWLYLAFNEITG 357 (1025)
Q Consensus 291 L~~L~Ls~n~l~~--lp~~-----l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~l~~ 357 (1025)
|+.|+++.+++.+ +|+. ...+++|++|++..|++..- .++.++ ..+++|+.|....|.++.
T Consensus 273 L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w--~sl~~l----~~l~nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 273 LNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDW--RSLNHL----RTLENLKHLRITLNYLNK 340 (505)
T ss_pred hhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccc--cccchh----hccchhhhhhcccccccc
Confidence 7777777777766 3433 34566777777777776421 111111 122267777766776653
No 32
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.92 E-value=9e-10 Score=108.27 Aligned_cols=122 Identities=29% Similarity=0.320 Sum_probs=30.9
Q ss_pred cccEEEccCccccccCCCccc-CCCCCCEEEcCCCcccccCCcccccccCCCEEEcccCcccccCCccccCCCCccEEeC
Q 047190 560 LLTYLDLSNNLLSGRLPDCWF-QFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDL 638 (1025)
Q Consensus 560 ~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 638 (1025)
.+++|+|++|.|+. +. .++ .+.+|+.|++++|.++.. +.+..++.|++|++++|+|+...+.....+++|+.|++
T Consensus 20 ~~~~L~L~~n~I~~-Ie-~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L 95 (175)
T PF14580_consen 20 KLRELNLRGNQIST-IE-NLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYL 95 (175)
T ss_dssp ------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-CHHHHHH-TT--EEE-
T ss_pred cccccccccccccc-cc-chhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCccccchHHhCCcCCEEEC
Confidence 35666666666663 22 233 355666666666666533 23445555555566555555332211234555555555
Q ss_pred CCCcCccccC-hhhhhcCCCCcEEEeecCcCcccCc---ccccccCcccEEE
Q 047190 639 GKNGLSGEIP-TWIGESLPNLVVLSLRSNKFHGNIP---FQLCYLSHIQILD 686 (1025)
Q Consensus 639 s~N~l~g~ip-~~~~~~l~~L~~L~L~~N~l~~~~p---~~l~~l~~L~~L~ 686 (1025)
++|+|...-- ..+. .+++|++|+|.+|+++...- ..+..+|+|+.||
T Consensus 96 ~~N~I~~l~~l~~L~-~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD 146 (175)
T PF14580_consen 96 SNNKISDLNELEPLS-SLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLD 146 (175)
T ss_dssp TTS---SCCCCGGGG-G-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEET
T ss_pred cCCcCCChHHhHHHH-cCCCcceeeccCCcccchhhHHHHHHHHcChhheeC
Confidence 5555542110 1222 35555555555555543211 1234455555554
No 33
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.91 E-value=3.7e-10 Score=117.57 Aligned_cols=233 Identities=22% Similarity=0.240 Sum_probs=134.1
Q ss_pred CcEEEEECCCCCCCCCCccc----ccccccCcCCCCCcEEEccCCCCCCC---CCcc-------cccCcccccccccccc
Q 047190 82 GHVLGLDLRASSDSPVDALK----GTINPSLLKLQHLTYLDLSWNNFSGS---PIPE-------FIGSLGKLSELALSSA 147 (1025)
Q Consensus 82 ~~v~~L~L~~~~~~~~~~l~----g~l~~~l~~l~~L~~L~Ls~n~l~~~---~~p~-------~l~~l~~L~~L~Ls~n 147 (1025)
..++.|+|++ +.+. ..+.+.+.+.+.|+.-+++.- ++|. .+|+ .+-.+++|++||||.|
T Consensus 30 ~s~~~l~lsg------nt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDN 102 (382)
T KOG1909|consen 30 DSLTKLDLSG------NTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDN 102 (382)
T ss_pred CceEEEeccC------CchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeecccc
Confidence 4688999998 3342 234566778888888888853 2322 2343 3445678999999999
Q ss_pred cCCCCcch----hccCCCCCCEEecccCCCCCCCC------------chhcccCCCCCeeeccCCcCCCC--cchHHhhC
Q 047190 148 QFAGPIPH----QLGNLSKLQVLDLRFNNLFSSGN------------LDWLSYLSSLRYLDLADCKLSKF--SNWVQVLS 209 (1025)
Q Consensus 148 ~l~~~~p~----~l~~L~~L~~L~Ls~n~i~~~~~------------~~~l~~l~~L~~L~L~~n~l~~~--~~~~~~l~ 209 (1025)
.|.-..+. -+..+..|++|.|.+|.+...+. ....+.-+.||++..+.|++.+. ..+...+.
T Consensus 103 A~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~ 182 (382)
T KOG1909|consen 103 AFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQ 182 (382)
T ss_pred ccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHH
Confidence 88754443 34567889999999887622111 01234457788888888887665 34556677
Q ss_pred CCCCCCEEEcCCCCCCCCCCCc--ccccccCCcccEEEccCCCCCCCCch----hhhhcCCCCccEEEcCCCCCCCCchh
Q 047190 210 NLRSLTNLYLGYCDLPPISTPS--LLHINYSKSLEVIDLSNNYLTNSIYP----WLFNVSSNLVDHIDLGSNQLHGSIPL 283 (1025)
Q Consensus 210 ~l~~L~~L~L~~n~l~~~~~~~--~~~~~~~~~L~~L~Ls~n~l~~~~~~----~l~~l~~~~L~~L~Ls~n~l~~~~p~ 283 (1025)
..+.|+.+.+..|.|....... ..+.. +++|++|||..|.++..... .+..++. |+.|++++|.+...-..
T Consensus 183 ~~~~leevr~~qN~I~~eG~~al~eal~~-~~~LevLdl~DNtft~egs~~LakaL~s~~~--L~El~l~dcll~~~Ga~ 259 (382)
T KOG1909|consen 183 SHPTLEEVRLSQNGIRPEGVTALAEALEH-CPHLEVLDLRDNTFTLEGSVALAKALSSWPH--LRELNLGDCLLENEGAI 259 (382)
T ss_pred hccccceEEEecccccCchhHHHHHHHHh-CCcceeeecccchhhhHHHHHHHHHhcccch--heeecccccccccccHH
Confidence 7788888888888765433211 11222 36777777777766532222 2223333 55555555555433222
Q ss_pred hh-----hCCCCCcEEEccCCCCCC-----cchhhcCCCCccEEEeecCCC
Q 047190 284 AF-----GHMASLRHLDLLSNQLRE-----VPKFLGNMSSLKRLVFSYNEL 324 (1025)
Q Consensus 284 ~~-----~~l~~L~~L~Ls~n~l~~-----lp~~l~~l~~L~~L~Ls~n~l 324 (1025)
+| ...+.|+.|.+.+|.++. +...+...+.|+.|+|++|.+
T Consensus 260 a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 260 AFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 22 123455555555555443 112333344555555555554
No 34
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.90 E-value=4.7e-10 Score=110.24 Aligned_cols=129 Identities=32% Similarity=0.329 Sum_probs=39.9
Q ss_pred cCCCCCcEEEccCCCCCCCCCccccc-CcccccccccccccCCCCcchhccCCCCCCEEecccCCCCCCCCchhc-ccCC
Q 047190 109 LKLQHLTYLDLSWNNFSGSPIPEFIG-SLGKLSELALSSAQFAGPIPHQLGNLSKLQVLDLRFNNLFSSGNLDWL-SYLS 186 (1025)
Q Consensus 109 ~~l~~L~~L~Ls~n~l~~~~~p~~l~-~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~Ls~n~i~~~~~~~~l-~~l~ 186 (1025)
.+...++.|+|++|.|+.+ +.++ .+.+|+.|+|++|.++. ++ .+..+++|++|++++|.|.+.. ..+ ..++
T Consensus 16 ~n~~~~~~L~L~~n~I~~I---e~L~~~l~~L~~L~Ls~N~I~~-l~-~l~~L~~L~~L~L~~N~I~~i~--~~l~~~lp 88 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQISTI---ENLGATLDKLEVLDLSNNQITK-LE-GLPGLPRLKTLDLSNNRISSIS--EGLDKNLP 88 (175)
T ss_dssp -----------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS---S-C--HHHHHH-T
T ss_pred ccccccccccccccccccc---cchhhhhcCCCEEECCCCCCcc-cc-CccChhhhhhcccCCCCCCccc--cchHHhCC
Confidence 3444567777777777643 2344 46677777777777763 32 3666777777777777663321 223 3567
Q ss_pred CCCeeeccCCcCCCCcchHHhhCCCCCCCEEEcCCCCCCCCCCCcccccccCCcccEEE
Q 047190 187 SLRYLDLADCKLSKFSNWVQVLSNLRSLTNLYLGYCDLPPISTPSLLHINYSKSLEVID 245 (1025)
Q Consensus 187 ~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~ 245 (1025)
+|++|++++|++..+.+ ...++.+++|++|++.+|.++............+|+|+.||
T Consensus 89 ~L~~L~L~~N~I~~l~~-l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD 146 (175)
T PF14580_consen 89 NLQELYLSNNKISDLNE-LEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLD 146 (175)
T ss_dssp T--EEE-TTS---SCCC-CGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEET
T ss_pred cCCEEECcCCcCCChHH-hHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeC
Confidence 77777777777666544 24555666666666666665544332222222235666655
No 35
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.86 E-value=7e-10 Score=112.32 Aligned_cols=133 Identities=27% Similarity=0.301 Sum_probs=82.6
Q ss_pred CCCccEEeCCCCcCccccChhhhhcCCCCcEEEeecCcCcccCcccccccCcccEEEccccccccccCccccCccccccc
Q 047190 630 GSQLTLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPKCFHNFTAMTKE 709 (1025)
Q Consensus 630 l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~ 709 (1025)
...|+++||++|.|+ .+.+++- -.|.++.|++++|.+.... .+..+++|+.||||+|.++..
T Consensus 283 Wq~LtelDLS~N~I~-~iDESvK-L~Pkir~L~lS~N~i~~v~--nLa~L~~L~~LDLS~N~Ls~~-------------- 344 (490)
T KOG1259|consen 283 WQELTELDLSGNLIT-QIDESVK-LAPKLRRLILSQNRIRTVQ--NLAELPQLQLLDLSGNLLAEC-------------- 344 (490)
T ss_pred Hhhhhhccccccchh-hhhhhhh-hccceeEEeccccceeeeh--hhhhcccceEeecccchhHhh--------------
Confidence 345666666666666 5555554 4666666666666665322 355666666666666665521
Q ss_pred cccCcccccccccccccccccceeEeecccCCccceeeccccceeEEEcccCCCCCcChhhHhhcccCCeEeccCccccc
Q 047190 710 KSSNLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTG 789 (1025)
Q Consensus 710 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g 789 (1025)
...-..+.+++.|+|+.|.|..
T Consensus 345 ----------------------------------------------------------~Gwh~KLGNIKtL~La~N~iE~ 366 (490)
T KOG1259|consen 345 ----------------------------------------------------------VGWHLKLGNIKTLKLAQNKIET 366 (490)
T ss_pred ----------------------------------------------------------hhhHhhhcCEeeeehhhhhHhh
Confidence 1111233345555555555542
Q ss_pred cCCCCCCCCCCccEEeCCCCcCCCcC-cccccCCCCCCEEECcCCcccccCC
Q 047190 790 QITPRIGQLKSLDFLDLSRNHFFGGI-PSSLSRLRLLSVMDLSYNNFSGKIP 840 (1025)
Q Consensus 790 ~ip~~~~~l~~L~~LdLs~N~l~g~i-p~~l~~l~~L~~Ldls~N~l~g~ip 840 (1025)
. +.++.+-+|+.||+++|+|.... -..+++++-|+.+-+.+|++.+.+.
T Consensus 367 L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vd 416 (490)
T KOG1259|consen 367 L--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVD 416 (490)
T ss_pred h--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccch
Confidence 2 23566678888888888886432 2577888999999999999988654
No 36
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.79 E-value=9.4e-10 Score=111.41 Aligned_cols=132 Identities=24% Similarity=0.292 Sum_probs=85.0
Q ss_pred CCCCCcEEEccCCCCCCcchhhcCCCCccEEEeecCCCCCcchHHhhhcCCCCCCCCCCcEEEccccccccccCCCCCCC
Q 047190 287 HMASLRHLDLLSNQLREVPKFLGNMSSLKRLVFSYNELRGELSEFIQNVSSGSTKNSSLEWLYLAFNEITGTIPDLGGFP 366 (1025)
Q Consensus 287 ~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~l~~~~p~l~~l~ 366 (1025)
..+.|+++||++|.++.+.+++.-.+.++.|++++|.+.... .+..++ +|+.|||++|.++...-.-.++-
T Consensus 282 TWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~--nLa~L~-------~L~~LDLS~N~Ls~~~Gwh~KLG 352 (490)
T KOG1259|consen 282 TWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQ--NLAELP-------QLQLLDLSGNLLAECVGWHLKLG 352 (490)
T ss_pred hHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeeh--hhhhcc-------cceEeecccchhHhhhhhHhhhc
Confidence 345567777777777777666766777777777777765432 244444 77777777776663322234556
Q ss_pred CCcEEEeecccccCcccccccccCCcceeeccCcccccccchhhhcCCCCCcEEECCCCcccc
Q 047190 367 SLQILSLENNRLTGTISKSIGQLSKLELLLLSGNSLRGVISEALFSNLSSLDTLQLSDNSLTL 429 (1025)
Q Consensus 367 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~ 429 (1025)
+.+.|.|++|.+... ..++.+-+|..||+++|+|...-....++++|-|+.+.|.+|++.+
T Consensus 353 NIKtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 353 NIKTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred CEeeeehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence 677777777776522 3456667777777777777654444446777777777777777654
No 37
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.75 E-value=5.2e-09 Score=128.40 Aligned_cols=109 Identities=36% Similarity=0.398 Sum_probs=68.5
Q ss_pred CcCCCCCcEEEccCCCCCCCCCcccccCcccccccccccccCCCCcchhccCCCCCCEEecccCCCCCCCCchhcccCCC
Q 047190 108 LLKLQHLTYLDLSWNNFSGSPIPEFIGSLGKLSELALSSAQFAGPIPHQLGNLSKLQVLDLRFNNLFSSGNLDWLSYLSS 187 (1025)
Q Consensus 108 l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~Ls~n~i~~~~~~~~l~~l~~ 187 (1025)
|..++.|++|||++|.=-+ .+|..++.|-+||||+|++..++ .+|..+++|+.|.+||+..+.... ..+.....+++
T Consensus 567 f~~m~~LrVLDLs~~~~l~-~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~-~~~~i~~~L~~ 643 (889)
T KOG4658|consen 567 FRSLPLLRVLDLSGNSSLS-KLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLE-SIPGILLELQS 643 (889)
T ss_pred HhhCcceEEEECCCCCccC-cCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccc-cccchhhhccc
Confidence 5567778888887754323 47777887888888888877777 677777888888888777665311 11334445777
Q ss_pred CCeeeccCCcCCCCcchHHhhCCCCCCCEEEc
Q 047190 188 LRYLDLADCKLSKFSNWVQVLSNLRSLTNLYL 219 (1025)
Q Consensus 188 L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L 219 (1025)
||+|.+..............+.++.+|+.+..
T Consensus 644 Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~ 675 (889)
T KOG4658|consen 644 LRVLRLPRSALSNDKLLLKELENLEHLENLSI 675 (889)
T ss_pred ccEEEeeccccccchhhHHhhhcccchhhhee
Confidence 77777766553332223344445555555544
No 38
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.70 E-value=9.3e-09 Score=83.02 Aligned_cols=60 Identities=40% Similarity=0.486 Sum_probs=40.5
Q ss_pred cCCeEeccCccccccCCCCCCCCCCccEEeCCCCcCCCcCcccccCCCCCCEEECcCCcc
Q 047190 776 GLVALNLSNNNLTGQITPRIGQLKSLDFLDLSRNHFFGGIPSSLSRLRLLSVMDLSYNNF 835 (1025)
Q Consensus 776 ~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~Ldls~N~l 835 (1025)
+|++|++++|+++...+..|.++++|++||+++|+++...|..|..+++|++|++++|++
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 466666666666666566666677777777777777666666667777777777776654
No 39
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=98.70 E-value=1.9e-08 Score=74.13 Aligned_cols=41 Identities=44% Similarity=0.987 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHhcCC-CCCCCCCCCCCCCCCCCCCcccceEec
Q 047190 37 DEEKESLLAFKQGLI-DESGILSSWGREDEKRNCCKWRGVRCS 78 (1025)
Q Consensus 37 ~~~~~~ll~~k~~~~-~~~~~l~~W~~~~~~~~~c~w~gv~C~ 78 (1025)
++|++||++||+++. +|.+.+.+|+... ..+||+|.||+|+
T Consensus 2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~~~-~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNNDPSGVLSSWNPSS-DSDPCSWSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT-SC-CCCTT--TT---S-CCCSTTEEE-
T ss_pred cHHHHHHHHHHHhcccccCcccccCCCcC-CCCCeeeccEEeC
Confidence 689999999999998 5778999998411 2799999999995
No 40
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.68 E-value=1.7e-09 Score=124.64 Aligned_cols=197 Identities=30% Similarity=0.350 Sum_probs=100.9
Q ss_pred CCCCCcEEEccCCCCCCCCCcccccCcccccccccccccCCCCcchhccCCCCCCEEecccCCCCCCCCchhcccCCCCC
Q 047190 110 KLQHLTYLDLSWNNFSGSPIPEFIGSLGKLSELALSSAQFAGPIPHQLGNLSKLQVLDLRFNNLFSSGNLDWLSYLSSLR 189 (1025)
Q Consensus 110 ~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~Ls~n~i~~~~~~~~l~~l~~L~ 189 (1025)
.+..++.+++..|.+.. +-..++.+++|.+|++.+|++.. +...+..+++|++|++++|.|.. ...+..++.|+
T Consensus 70 ~l~~l~~l~l~~n~i~~--~~~~l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~---i~~l~~l~~L~ 143 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAK--ILNHLSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITK---LEGLSTLTLLK 143 (414)
T ss_pred HhHhHHhhccchhhhhh--hhcccccccceeeeeccccchhh-cccchhhhhcchheecccccccc---ccchhhccchh
Confidence 45556666666666653 23345666777777777777663 33335666777777777776632 33445555577
Q ss_pred eeeccCCcCCCCcchHHhhCCCCCCCEEEcCCCCCCCCCCCcccccccCCcccEEEccCCCCCCCCchhhhhcCCCCccE
Q 047190 190 YLDLADCKLSKFSNWVQVLSNLRSLTNLYLGYCDLPPISTPSLLHINYSKSLEVIDLSNNYLTNSIYPWLFNVSSNLVDH 269 (1025)
Q Consensus 190 ~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~~~L~~ 269 (1025)
.|++++|.++.+.. +..++.|+.+++++|.+...... . ...+ .+++.+++.+|.+... ..+..... +..
T Consensus 144 ~L~l~~N~i~~~~~----~~~l~~L~~l~l~~n~i~~ie~~-~-~~~~-~~l~~l~l~~n~i~~i--~~~~~~~~--l~~ 212 (414)
T KOG0531|consen 144 ELNLSGNLISDISG----LESLKSLKLLDLSYNRIVDIEND-E-LSEL-ISLEELDLGGNSIREI--EGLDLLKK--LVL 212 (414)
T ss_pred hheeccCcchhccC----CccchhhhcccCCcchhhhhhhh-h-hhhc-cchHHHhccCCchhcc--cchHHHHH--HHH
Confidence 77777777666432 34466666666666666554431 0 0111 5556666666655421 11111222 333
Q ss_pred EEcCCCCCCCCchhhhhCCC--CCcEEEccCCCCCCcchhhcCCCCccEEEeecCCCC
Q 047190 270 IDLGSNQLHGSIPLAFGHMA--SLRHLDLLSNQLREVPKFLGNMSSLKRLVFSYNELR 325 (1025)
Q Consensus 270 L~Ls~n~l~~~~p~~~~~l~--~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~ 325 (1025)
+++..|.++..-+ +..+. .|+.+++++|.+..++..+..+.++..|++..|++.
T Consensus 213 ~~l~~n~i~~~~~--l~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~~~ 268 (414)
T KOG0531|consen 213 LSLLDNKISKLEG--LNELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSNRIS 268 (414)
T ss_pred hhcccccceeccC--cccchhHHHHHHhcccCccccccccccccccccccchhhcccc
Confidence 3444444442211 11111 245555555555544434444444445555444443
No 41
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.65 E-value=3.1e-09 Score=122.44 Aligned_cols=56 Identities=27% Similarity=0.326 Sum_probs=23.3
Q ss_pred eEEEcccCCCCCcChhhHhhcccCCeEeccCccccccCCCCCCCCCCccEEeCCCCcCC
Q 047190 754 KIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSRNHFF 812 (1025)
Q Consensus 754 ~~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~ 812 (1025)
+.+++++|++.. ++..+..+..+..|++++|++...-. +.....+..+.++.|.+.
T Consensus 235 ~~l~l~~n~i~~-~~~~~~~~~~l~~l~~~~n~~~~~~~--~~~~~~~~~~~~~~~~~~ 290 (414)
T KOG0531|consen 235 RELYLSGNRISR-SPEGLENLKNLPVLDLSSNRISNLEG--LERLPKLSELWLNDNKLA 290 (414)
T ss_pred HHHhcccCcccc-ccccccccccccccchhhcccccccc--ccccchHHHhccCcchhc
Confidence 444555555442 11333444445555555554443211 222333444444444433
No 42
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.63 E-value=2.2e-08 Score=80.84 Aligned_cols=60 Identities=38% Similarity=0.496 Sum_probs=57.1
Q ss_pred ceeEEEcccCCCCCcChhhHhhcccCCeEeccCccccccCCCCCCCCCCccEEeCCCCcC
Q 047190 752 LIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSRNHF 811 (1025)
Q Consensus 752 ~l~~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l 811 (1025)
.|+.|++++|+++...+..|.++++|++|++++|+++...|..|.++++|++|++++|+|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 568999999999988889999999999999999999999999999999999999999986
No 43
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.61 E-value=2.2e-08 Score=122.92 Aligned_cols=108 Identities=30% Similarity=0.259 Sum_probs=80.2
Q ss_pred CCCCcEEEccCCC--CCCCCCcccccCcccccccccccccCCCCcchhccCCCCCCEEecccCCCCCCCCchhcccCCCC
Q 047190 111 LQHLTYLDLSWNN--FSGSPIPEFIGSLGKLSELALSSAQFAGPIPHQLGNLSKLQVLDLRFNNLFSSGNLDWLSYLSSL 188 (1025)
Q Consensus 111 l~~L~~L~Ls~n~--l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~Ls~n~i~~~~~~~~l~~l~~L 188 (1025)
.+.|++|=+.+|. +... .+++|..++.|++|||++|.--+.+|..++.|-+||+|+|++..+ ...|..+.+++.|
T Consensus 544 ~~~L~tLll~~n~~~l~~i-s~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I--~~LP~~l~~Lk~L 620 (889)
T KOG4658|consen 544 NPKLRTLLLQRNSDWLLEI-SGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGI--SHLPSGLGNLKKL 620 (889)
T ss_pred CCccceEEEeecchhhhhc-CHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCc--cccchHHHHHHhh
Confidence 3368888888875 4432 455678889999999998876678899999999999999988876 3567778888888
Q ss_pred CeeeccCCcCCCCcchHHhhCCCCCCCEEEcCCCC
Q 047190 189 RYLDLADCKLSKFSNWVQVLSNLRSLTNLYLGYCD 223 (1025)
Q Consensus 189 ~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~ 223 (1025)
.+|++..+...... +.....+++|++|.+....
T Consensus 621 ~~Lnl~~~~~l~~~--~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 621 IYLNLEVTGRLESI--PGILLELQSLRVLRLPRSA 653 (889)
T ss_pred heeccccccccccc--cchhhhcccccEEEeeccc
Confidence 88888877543321 3455668888888776654
No 44
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.53 E-value=6.9e-09 Score=105.40 Aligned_cols=60 Identities=30% Similarity=0.345 Sum_probs=30.4
Q ss_pred CCCEEecccCCCCCCCCchhcccCCCCCeeeccCCcCCCCcchHHhhCCCCCCCEEEcCCCC
Q 047190 162 KLQVLDLRFNNLFSSGNLDWLSYLSSLRYLDLADCKLSKFSNWVQVLSNLRSLTNLYLGYCD 223 (1025)
Q Consensus 162 ~L~~L~Ls~n~i~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~ 223 (1025)
.|++||||...|+.......++.+++|+.|.|.++++.+ .+...+++-.+|+.|+++.|+
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD--~I~~~iAkN~~L~~lnlsm~s 245 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDD--PIVNTIAKNSNLVRLNLSMCS 245 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCc--HHHHHHhccccceeecccccc
Confidence 355555555444222222334555555555555555544 344455555555555555543
No 45
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.47 E-value=6.4e-09 Score=105.65 Aligned_cols=181 Identities=24% Similarity=0.232 Sum_probs=92.9
Q ss_pred CCcEEEccCCCCCCCCCcccccCcccccccccccccCCCCcchhccCCCCCCEEecccCCCCCCCC-chhcccCCCCCee
Q 047190 113 HLTYLDLSWNNFSGSPIPEFIGSLGKLSELALSSAQFAGPIPHQLGNLSKLQVLDLRFNNLFSSGN-LDWLSYLSSLRYL 191 (1025)
Q Consensus 113 ~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~Ls~n~i~~~~~-~~~l~~l~~L~~L 191 (1025)
.|++||||...|+..++-..+..|.+|+.|.|.++++.+.+-..+++-.+|+.|+|+.+.-++... .-.+..++.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 366677776666544444555666677777777777766666666666667777776664211111 1124445555555
Q ss_pred eccCCcCCCCcchHHhhCCCCCCCEEEcCCCCCCCCCCCcccccccCCcccEEEccCCCC--CC-CCchhhhhcCCCCcc
Q 047190 192 DLADCKLSKFSNWVQVLSNLRSLTNLYLGYCDLPPISTPSLLHINYSKSLEVIDLSNNYL--TN-SIYPWLFNVSSNLVD 268 (1025)
Q Consensus 192 ~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l--~~-~~~~~l~~l~~~~L~ 268 (1025)
+|+.|.+.. .... .......++|+.|+++++.- .. .+..-....+. +.
T Consensus 266 NlsWc~l~~--------------------------~~Vt-v~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~--l~ 316 (419)
T KOG2120|consen 266 NLSWCFLFT--------------------------EKVT-VAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPN--LV 316 (419)
T ss_pred CchHhhccc--------------------------hhhh-HHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCc--ee
Confidence 555554332 2211 11111124555555555421 11 11111123333 56
Q ss_pred EEEcCCCC-CCCCchhhhhCCCCCcEEEccCCCCCCcch---hhcCCCCccEEEeecCC
Q 047190 269 HIDLGSNQ-LHGSIPLAFGHMASLRHLDLLSNQLREVPK---FLGNMSSLKRLVFSYNE 323 (1025)
Q Consensus 269 ~L~Ls~n~-l~~~~p~~~~~l~~L~~L~Ls~n~l~~lp~---~l~~l~~L~~L~Ls~n~ 323 (1025)
+|||+.|. ++...-..|-+++.|++|.++.|..- +|. .+...+.|.+|++.++-
T Consensus 317 ~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i-~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 317 HLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDI-IPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred eeccccccccCchHHHHHHhcchheeeehhhhcCC-ChHHeeeeccCcceEEEEecccc
Confidence 66666553 33333445556666777777666432 222 34566778888777664
No 46
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.36 E-value=1.2e-08 Score=115.17 Aligned_cols=81 Identities=37% Similarity=0.238 Sum_probs=43.9
Q ss_pred eEEEcccCCCCCcChhhHhhcccCCeEeccCccccccCCCCCCCCCCccEEeCCCCcCCCcCc-ccccCCCCCCEEECcC
Q 047190 754 KIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSRNHFFGGIP-SSLSRLRLLSVMDLSY 832 (1025)
Q Consensus 754 ~~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip-~~l~~l~~L~~Ldls~ 832 (1025)
+.||||+|.+.-..--....+. |+.|+|++|.++... .+.+|++|+.||||+|-|++.-. ..+..|..|..|.|.+
T Consensus 212 khLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL~--gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeG 288 (1096)
T KOG1859|consen 212 KHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTLR--GIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEG 288 (1096)
T ss_pred cccccccchhccccccchhhhh-heeeeecccHHHhhh--hHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcC
Confidence 5555666555532222222233 666666666665432 35566667777777776665311 2233455666667777
Q ss_pred Ccccc
Q 047190 833 NNFSG 837 (1025)
Q Consensus 833 N~l~g 837 (1025)
|++.+
T Consensus 289 NPl~c 293 (1096)
T KOG1859|consen 289 NPLCC 293 (1096)
T ss_pred Ccccc
Confidence 76654
No 47
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.30 E-value=2e-07 Score=94.92 Aligned_cols=90 Identities=24% Similarity=0.293 Sum_probs=62.9
Q ss_pred CCCCCEEecccCCCCCCCCchhcc-cCCCCCeeeccCCcCCCCcchHHhhCCCCCCCEEEcCCCCCCCCCCCcccccccC
Q 047190 160 LSKLQVLDLRFNNLFSSGNLDWLS-YLSSLRYLDLADCKLSKFSNWVQVLSNLRSLTNLYLGYCDLPPISTPSLLHINYS 238 (1025)
Q Consensus 160 L~~L~~L~Ls~n~i~~~~~~~~l~-~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~ 238 (1025)
+..++.|.+.++.|-..+....++ .++.++.|||.+|.+++..++...+.++|.|+.|+++.|.+...+.... ...
T Consensus 44 ~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp--~p~- 120 (418)
T KOG2982|consen 44 LRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP--LPL- 120 (418)
T ss_pred ccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc--ccc-
Confidence 344555666666554444444444 4678999999999999988888888999999999999999877654311 122
Q ss_pred CcccEEEccCCCCC
Q 047190 239 KSLEVIDLSNNYLT 252 (1025)
Q Consensus 239 ~~L~~L~Ls~n~l~ 252 (1025)
.+|++|-|.+..+.
T Consensus 121 ~nl~~lVLNgT~L~ 134 (418)
T KOG2982|consen 121 KNLRVLVLNGTGLS 134 (418)
T ss_pred cceEEEEEcCCCCC
Confidence 66777777666554
No 48
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.15 E-value=6.6e-08 Score=109.34 Aligned_cols=126 Identities=31% Similarity=0.306 Sum_probs=68.6
Q ss_pred CCcEEEccCCCCCCcchhhcCCCCccEEEeecCCCCCcchHHhhhcCCCCCCCCCCcEEEccccccccccCCC--CCCCC
Q 047190 290 SLRHLDLLSNQLREVPKFLGNMSSLKRLVFSYNELRGELSEFIQNVSSGSTKNSSLEWLYLAFNEITGTIPDL--GGFPS 367 (1025)
Q Consensus 290 ~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~l~~~~p~l--~~l~~ 367 (1025)
.|...+.++|.+..+..++.-++.|+.|+|++|++.... .+..++ +|++|||++|.+. .+|.+ .++.
T Consensus 165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~-------~LkhLDlsyN~L~-~vp~l~~~gc~- 233 (1096)
T KOG1859|consen 165 KLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD--NLRRLP-------KLKHLDLSYNCLR-HVPQLSMVGCK- 233 (1096)
T ss_pred hHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH--HHHhcc-------cccccccccchhc-cccccchhhhh-
Confidence 355555566666555555555666666666666655432 344444 6666666666655 34432 2222
Q ss_pred CcEEEeecccccCcccccccccCCcceeeccCcccccccchhhhcCCCCCcEEECCCCccc
Q 047190 368 LQILSLENNRLTGTISKSIGQLSKLELLLLSGNSLRGVISEALFSNLSSLDTLQLSDNSLT 428 (1025)
Q Consensus 368 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~ 428 (1025)
|+.|.+++|.++.. ..+.++.+|+.||++.|-+.+.-.-..+..+..|+.|.|.+|++-
T Consensus 234 L~~L~lrnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 234 LQLLNLRNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred heeeeecccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 66666666665522 245556666666666666654333333444555666666666553
No 49
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.13 E-value=1.2e-07 Score=85.59 Aligned_cols=87 Identities=26% Similarity=0.303 Sum_probs=59.8
Q ss_pred eEEEcccCCCCCcChhhHhhcccCCeEeccCccccccCCCCCCCCCCccEEeCCCCcCCCcCcccccCCCCCCEEECcCC
Q 047190 754 KIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSRNHFFGGIPSSLSRLRLLSVMDLSYN 833 (1025)
Q Consensus 754 ~~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~Ldls~N 833 (1025)
+.|+|++|.++ .+|.++..++.|+.||++.|.+. ..|..+..|.++..||..+|.+- +||-.+---+.....++.++
T Consensus 80 t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~~~al~~lgne 156 (177)
T KOG4579|consen 80 TTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLFYSSLPALIKLGNE 156 (177)
T ss_pred hhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHhccccHHHHHhcCC
Confidence 66777777776 46777888888888888888887 44556666888888888888776 34444332233444566777
Q ss_pred cccccCCCCC
Q 047190 834 NFSGKIPKGT 843 (1025)
Q Consensus 834 ~l~g~ip~~~ 843 (1025)
++.|..|...
T Consensus 157 pl~~~~~~kl 166 (177)
T KOG4579|consen 157 PLGDETKKKL 166 (177)
T ss_pred cccccCcccc
Confidence 7777777653
No 50
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.12 E-value=4.5e-07 Score=92.49 Aligned_cols=183 Identities=22% Similarity=0.260 Sum_probs=92.1
Q ss_pred CcccEEEccCCCCCC--CCchhhhhcCCCCccEEEcCCCCCCCCchhhhhCCCCCcEEEccCCCCCC--cchhhcCCCCc
Q 047190 239 KSLEVIDLSNNYLTN--SIYPWLFNVSSNLVDHIDLGSNQLHGSIPLAFGHMASLRHLDLLSNQLRE--VPKFLGNMSSL 314 (1025)
Q Consensus 239 ~~L~~L~Ls~n~l~~--~~~~~l~~l~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~--lp~~l~~l~~L 314 (1025)
+.++.+||.+|.++. .+..-+.+++. ++.|+++.|.+...|...-....+|+.|-|.+..+.- ....+..++.+
T Consensus 71 ~~v~elDL~~N~iSdWseI~~ile~lP~--l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 71 TDVKELDLTGNLISDWSEIGAILEQLPA--LTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred hhhhhhhcccchhccHHHHHHHHhcCcc--ceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 444444444444432 12222334444 5555555555543322111334556666665555443 33445555566
Q ss_pred cEEEeecCCCCCcc--hHHhhhcC---CCCCCCCCCcEEEccccccccccCCCCCCCCCcEEEeecccccCcc-cccccc
Q 047190 315 KRLVFSYNELRGEL--SEFIQNVS---SGSTKNSSLEWLYLAFNEITGTIPDLGGFPSLQILSLENNRLTGTI-SKSIGQ 388 (1025)
Q Consensus 315 ~~L~Ls~n~l~~~~--~~~~~~l~---~~~~~~~~L~~L~L~~n~l~~~~p~l~~l~~L~~L~L~~n~l~~~~-p~~l~~ 388 (1025)
+.|.++.|.+.... .+...... ......+.+..+.++-|++. .-+|++..+.+..|.+...- ......
T Consensus 149 telHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~------r~Fpnv~sv~v~e~PlK~~s~ek~se~ 222 (418)
T KOG2982|consen 149 TELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLS------RIFPNVNSVFVCEGPLKTESSEKGSEP 222 (418)
T ss_pred hhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHH------hhcccchheeeecCcccchhhcccCCC
Confidence 66666655321100 00000000 00011123333344444443 23567777888888765332 234455
Q ss_pred cCCcceeeccCcccccccchhhhcCCCCCcEEECCCCcccc
Q 047190 389 LSKLELLLLSGNSLRGVISEALFSNLSSLDTLQLSDNSLTL 429 (1025)
Q Consensus 389 l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~ 429 (1025)
++.+.-|+|+.|++..-.....+.+++.|..|.++.+++..
T Consensus 223 ~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d 263 (418)
T KOG2982|consen 223 FPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSD 263 (418)
T ss_pred CCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccc
Confidence 67777888888888765555567788888888888887764
No 51
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.01 E-value=1.8e-06 Score=87.04 Aligned_cols=228 Identities=22% Similarity=0.157 Sum_probs=101.2
Q ss_pred hccCCCCCCEEecccCCCCCCCCchh----cccCCCCCeeeccCCcCCCC-c-------chHHhhCCCCCCCEEEcCCCC
Q 047190 156 QLGNLSKLQVLDLRFNNLFSSGNLDW----LSYLSSLRYLDLADCKLSKF-S-------NWVQVLSNLRSLTNLYLGYCD 223 (1025)
Q Consensus 156 ~l~~L~~L~~L~Ls~n~i~~~~~~~~----l~~l~~L~~L~L~~n~l~~~-~-------~~~~~l~~l~~L~~L~L~~n~ 223 (1025)
.+..+..++.+|||+|.| ......+ +.+-.+|+..+++.-..... . -+..++-+||+|+..+|+.|.
T Consensus 25 el~~~d~~~evdLSGNti-gtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNA 103 (388)
T COG5238 25 ELEMMDELVEVDLSGNTI-GTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNA 103 (388)
T ss_pred HHHhhcceeEEeccCCcc-cHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccc
Confidence 344577788888888876 2222222 34456666666655322111 1 122344555555555555555
Q ss_pred CCCCCCCcc-cccccCCcccEEEccCCCCCCCC----chhhhhcCCCCccEEEcCCCCCCCCchhhhhCCCCCcEEEccC
Q 047190 224 LPPISTPSL-LHINYSKSLEVIDLSNNYLTNSI----YPWLFNVSSNLVDHIDLGSNQLHGSIPLAFGHMASLRHLDLLS 298 (1025)
Q Consensus 224 l~~~~~~~~-~~~~~~~~L~~L~Ls~n~l~~~~----~~~l~~l~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~ 298 (1025)
+....+..+ .+....+.|++|.+++|.+.... ...++.+.. -.-.++-+.|++.....
T Consensus 104 fg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~-----------------nKKaa~kp~Le~vicgr 166 (388)
T COG5238 104 FGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAY-----------------NKKAADKPKLEVVICGR 166 (388)
T ss_pred cCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHH-----------------HhhhccCCCceEEEecc
Confidence 443332211 01111134444444444332111 111111100 01122345666666666
Q ss_pred CCCCCcch-----hhcCCCCccEEEeecCCCCCcchHHhhhcCCCCCCCCCCcEEEccccccccccCC-----CCCCCCC
Q 047190 299 NQLREVPK-----FLGNMSSLKRLVFSYNELRGELSEFIQNVSSGSTKNSSLEWLYLAFNEITGTIPD-----LGGFPSL 368 (1025)
Q Consensus 299 n~l~~lp~-----~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~l~~~~p~-----l~~l~~L 368 (1025)
|++...|. .+..-..|+.+.+..|.|.-..-..+.-+ +...+.+|+.|||.+|.++..... +...+.|
T Consensus 167 NRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~--gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~l 244 (388)
T COG5238 167 NRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFL--GLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLL 244 (388)
T ss_pred chhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHH--HHHHhCcceeeeccccchhhhhHHHHHHHhcccchh
Confidence 66655331 23333466666666666553321111110 011223666666666665532111 3334445
Q ss_pred cEEEeecccccCccccccc------ccCCcceeeccCcccc
Q 047190 369 QILSLENNRLTGTISKSIG------QLSKLELLLLSGNSLR 403 (1025)
Q Consensus 369 ~~L~L~~n~l~~~~p~~l~------~l~~L~~L~L~~N~l~ 403 (1025)
++|.+.+|-++.....++. ..++|..|-..+|...
T Consensus 245 rEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~ 285 (388)
T COG5238 245 RELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERR 285 (388)
T ss_pred hhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhc
Confidence 6666666655433322221 1345555555555544
No 52
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.94 E-value=5.1e-06 Score=83.91 Aligned_cols=93 Identities=25% Similarity=0.201 Sum_probs=56.9
Q ss_pred CcCCCCCcEEEccCCCCCCC---CCcccccCcccccccccccccC---CCCcc-------hhccCCCCCCEEecccCCCC
Q 047190 108 LLKLQHLTYLDLSWNNFSGS---PIPEFIGSLGKLSELALSSAQF---AGPIP-------HQLGNLSKLQVLDLRFNNLF 174 (1025)
Q Consensus 108 l~~l~~L~~L~Ls~n~l~~~---~~p~~l~~l~~L~~L~Ls~n~l---~~~~p-------~~l~~L~~L~~L~Ls~n~i~ 174 (1025)
+..+..++.++||+|.|... .+...+.+-.+|+..++|.-.. .+.+| +.+.++++|+..+||.|.+.
T Consensus 26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg 105 (388)
T COG5238 26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG 105 (388)
T ss_pred HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccC
Confidence 34578888999999988643 1233445557788887776421 12233 34456788888888888763
Q ss_pred CCCCc---hhcccCCCCCeeeccCCcCCC
Q 047190 175 SSGNL---DWLSYLSSLRYLDLADCKLSK 200 (1025)
Q Consensus 175 ~~~~~---~~l~~l~~L~~L~L~~n~l~~ 200 (1025)
..... ..+++-+.|+||.|++|.+..
T Consensus 106 ~~~~e~L~d~is~~t~l~HL~l~NnGlGp 134 (388)
T COG5238 106 SEFPEELGDLISSSTDLVHLKLNNNGLGP 134 (388)
T ss_pred cccchHHHHHHhcCCCceeEEeecCCCCc
Confidence 22211 345566677777777765543
No 53
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.93 E-value=9.4e-07 Score=80.00 Aligned_cols=82 Identities=24% Similarity=0.352 Sum_probs=35.1
Q ss_pred CCCEEEcccCcccccCCccccCCCCccEEeCCCCcCccccChhhhhcCCCCcEEEeecCcCcccCcccccccCcccEEEc
Q 047190 608 SIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDL 687 (1025)
Q Consensus 608 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L 687 (1025)
.|+..+|++|.+....+..-...+.+++|++++|.|+ .+|+.+. .++.|+.|+++.|.+. ..|..+..+.++..||.
T Consensus 54 el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~A-am~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds 130 (177)
T KOG4579|consen 54 ELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELA-AMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDS 130 (177)
T ss_pred eEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHh-hhHHhhhcccccCccc-cchHHHHHHHhHHHhcC
Confidence 3344444444444322222223334444444444444 4444433 3444444444444444 33333434444444444
Q ss_pred ccccc
Q 047190 688 SLNNI 692 (1025)
Q Consensus 688 s~N~l 692 (1025)
.+|.+
T Consensus 131 ~~na~ 135 (177)
T KOG4579|consen 131 PENAR 135 (177)
T ss_pred CCCcc
Confidence 44443
No 54
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.83 E-value=2e-06 Score=92.09 Aligned_cols=300 Identities=18% Similarity=0.177 Sum_probs=154.6
Q ss_pred CCcEEEccCCCCCCC-CCcccccCccccccccccccc-CCCCcchhc-cCCCCCCEEecccCCCCCCCCch-hcccCCCC
Q 047190 113 HLTYLDLSWNNFSGS-PIPEFIGSLGKLSELALSSAQ-FAGPIPHQL-GNLSKLQVLDLRFNNLFSSGNLD-WLSYLSSL 188 (1025)
Q Consensus 113 ~L~~L~Ls~n~l~~~-~~p~~l~~l~~L~~L~Ls~n~-l~~~~p~~l-~~L~~L~~L~Ls~n~i~~~~~~~-~l~~l~~L 188 (1025)
.|+.|.+.++.=.+. ++-.+...++++++|++.++. +++..-.++ ..+++|++|+|..|...+..... ....+++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 455666665542221 233444566777777766664 222222222 34667777777665321222222 23456777
Q ss_pred CeeeccCCc-CCCCcchHHhhCCCCCCCEEEcCCCCCCCCCCCcccccccCCcccEEEccCCC-CCCCCchhh-hhcCCC
Q 047190 189 RYLDLADCK-LSKFSNWVQVLSNLRSLTNLYLGYCDLPPISTPSLLHINYSKSLEVIDLSNNY-LTNSIYPWL-FNVSSN 265 (1025)
Q Consensus 189 ~~L~L~~n~-l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~l-~~l~~~ 265 (1025)
++|+++.+. +++ ..+-....++..++.+.+++|.=.+.... ......+..+..+++..+. +++...-.+ .....
T Consensus 219 ~~lNlSwc~qi~~-~gv~~~~rG~~~l~~~~~kGC~e~~le~l-~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~- 295 (483)
T KOG4341|consen 219 KYLNLSWCPQISG-NGVQALQRGCKELEKLSLKGCLELELEAL-LKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHA- 295 (483)
T ss_pred HHhhhccCchhhc-CcchHHhccchhhhhhhhcccccccHHHH-HHHhccChHhhccchhhhccccchHHHHHhhhhhH-
Confidence 777777764 332 22223345566666666665532111110 0111112345555554542 232111111 12233
Q ss_pred CccEEEcCCCCCCC-Cchhhh-hCCCCCcEEEccCCC-CCC--cchhhcCCCCccEEEeecCCCCCcchHHhhhcCCCCC
Q 047190 266 LVDHIDLGSNQLHG-SIPLAF-GHMASLRHLDLLSNQ-LRE--VPKFLGNMSSLKRLVFSYNELRGELSEFIQNVSSGST 340 (1025)
Q Consensus 266 ~L~~L~Ls~n~l~~-~~p~~~-~~l~~L~~L~Ls~n~-l~~--lp~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~ 340 (1025)
|+.|+.+++...+ ..-.++ .++.+|+.|.+++++ ++. +...=.+...|+.+++..+...... .+..+ ..
T Consensus 296 -lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~--tL~sl---s~ 369 (483)
T KOG4341|consen 296 -LQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDG--TLASL---SR 369 (483)
T ss_pred -hhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhh--hHhhh---cc
Confidence 6777777765432 222233 456788888888875 333 2222346678888888877644221 12222 24
Q ss_pred CCCCCcEEEcccccccccc--CC----CCCCCCCcEEEeeccccc-CcccccccccCCcceeeccCcccccccc-hhhhc
Q 047190 341 KNSSLEWLYLAFNEITGTI--PD----LGGFPSLQILSLENNRLT-GTISKSIGQLSKLELLLLSGNSLRGVIS-EALFS 412 (1025)
Q Consensus 341 ~~~~L~~L~L~~n~l~~~~--p~----l~~l~~L~~L~L~~n~l~-~~~p~~l~~l~~L~~L~L~~N~l~~~~~-~~~~~ 412 (1025)
.++.|+.+.|++|...... -. -..+..|+.+.++++... ...-+.+..+++|+.+++-.++-...-+ ..+-.
T Consensus 370 ~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~ 449 (483)
T KOG4341|consen 370 NCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFAT 449 (483)
T ss_pred CCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHh
Confidence 5568888888888653222 11 245667888889888653 3334456678889998888776432211 12234
Q ss_pred CCCCCcEEE
Q 047190 413 NLSSLDTLQ 421 (1025)
Q Consensus 413 ~l~~L~~L~ 421 (1025)
++|++++..
T Consensus 450 ~lp~i~v~a 458 (483)
T KOG4341|consen 450 HLPNIKVHA 458 (483)
T ss_pred hCccceehh
Confidence 566665543
No 55
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.81 E-value=5.9e-05 Score=83.50 Aligned_cols=77 Identities=17% Similarity=0.194 Sum_probs=46.9
Q ss_pred cccccCCCEEEcccCcccccCCccccCCCCccEEeCCCCcCccccChhhhhcCCCCcEEEeecCcCcccCcccccccCcc
Q 047190 603 MSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHI 682 (1025)
Q Consensus 603 ~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L 682 (1025)
+..+..++.|++++|.++. +|. --.+|+.|+++++.--..+|..+ .++|++|++++|.....+|. +|
T Consensus 48 ~~~~~~l~~L~Is~c~L~s-LP~---LP~sLtsL~Lsnc~nLtsLP~~L---P~nLe~L~Ls~Cs~L~sLP~------sL 114 (426)
T PRK15386 48 IEEARASGRLYIKDCDIES-LPV---LPNELTEITIENCNNLTTLPGSI---PEGLEKLTVCHCPEISGLPE------SV 114 (426)
T ss_pred HHHhcCCCEEEeCCCCCcc-cCC---CCCCCcEEEccCCCCcccCCchh---hhhhhheEccCccccccccc------cc
Confidence 3345778888888887763 342 12468888887743323667544 35788888888732224443 46
Q ss_pred cEEEcccccc
Q 047190 683 QILDLSLNNI 692 (1025)
Q Consensus 683 ~~L~Ls~N~l 692 (1025)
+.|++++|..
T Consensus 115 e~L~L~~n~~ 124 (426)
T PRK15386 115 RSLEIKGSAT 124 (426)
T ss_pred ceEEeCCCCC
Confidence 6666665543
No 56
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.68 E-value=1.9e-05 Score=80.41 Aligned_cols=118 Identities=24% Similarity=0.259 Sum_probs=82.7
Q ss_pred ccccccccCcCCCCCcEEEccCCCCCCCCCcccccCcccccccccccc--cCCCCcchhccCCCCCCEEecccCCCCCCC
Q 047190 100 LKGTINPSLLKLQHLTYLDLSWNNFSGSPIPEFIGSLGKLSELALSSA--QFAGPIPHQLGNLSKLQVLDLRFNNLFSSG 177 (1025)
Q Consensus 100 l~g~l~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n--~l~~~~p~~l~~L~~L~~L~Ls~n~i~~~~ 177 (1025)
..|.+....-.+..|+.|++.+..++.. ..+-.|++|++|.+|.| ++++.++.....+++|++|++++|+|....
T Consensus 31 ~~g~~~gl~d~~~~le~ls~~n~gltt~---~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~ls 107 (260)
T KOG2739|consen 31 GAGKLGGLTDEFVELELLSVINVGLTTL---TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLS 107 (260)
T ss_pred cCCCcccccccccchhhhhhhccceeec---ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccccc
Confidence 3444555555667777777777777643 34566889999999999 667666666677799999999999985555
Q ss_pred CchhcccCCCCCeeeccCCcCCCCcch-HHhhCCCCCCCEEEcC
Q 047190 178 NLDWLSYLSSLRYLDLADCKLSKFSNW-VQVLSNLRSLTNLYLG 220 (1025)
Q Consensus 178 ~~~~l~~l~~L~~L~L~~n~l~~~~~~-~~~l~~l~~L~~L~L~ 220 (1025)
....+..+.+|..|++.+|..+...+. -..+.-+++|++|+-.
T Consensus 108 tl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~ 151 (260)
T KOG2739|consen 108 TLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGC 151 (260)
T ss_pred ccchhhhhcchhhhhcccCCccccccHHHHHHHHhhhhcccccc
Confidence 566677788888888888877665332 2344556666665433
No 57
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.60 E-value=1e-05 Score=86.85 Aligned_cols=279 Identities=20% Similarity=0.177 Sum_probs=163.0
Q ss_pred ccccccccccccCCCC--cchhccCCCCCCEEecccCCCCCCCCch-hcccCCCCCeeeccCCc-CCCCcchHHhhCCCC
Q 047190 137 GKLSELALSSAQFAGP--IPHQLGNLSKLQVLDLRFNNLFSSGNLD-WLSYLSSLRYLDLADCK-LSKFSNWVQVLSNLR 212 (1025)
Q Consensus 137 ~~L~~L~Ls~n~l~~~--~p~~l~~L~~L~~L~Ls~n~i~~~~~~~-~l~~l~~L~~L~L~~n~-l~~~~~~~~~l~~l~ 212 (1025)
..|+.|.+.++.=.+. +-..-.+++++++|++.++...+..... .-..+++|++|++..|. ++.. .+......++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~-~Lk~la~gC~ 216 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDV-SLKYLAEGCR 216 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHH-HHHHHHHhhh
Confidence 4688899988864433 2234467899999999999743333332 33578999999999964 4442 2233556799
Q ss_pred CCCEEEcCCCC-CCCCCCCcccccccCCcccEEEccCCCCCCCCchhhhhcCC--CCccEEEcCCCC-CCCCc-hhhhhC
Q 047190 213 SLTNLYLGYCD-LPPISTPSLLHINYSKSLEVIDLSNNYLTNSIYPWLFNVSS--NLVDHIDLGSNQ-LHGSI-PLAFGH 287 (1025)
Q Consensus 213 ~L~~L~L~~n~-l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~--~~L~~L~Ls~n~-l~~~~-p~~~~~ 287 (1025)
+|++|+++.|. +++.... ....-++.++.+.+.+|.-. -.+.+..... ..+.++++..|. ++... -..-..
T Consensus 217 kL~~lNlSwc~qi~~~gv~--~~~rG~~~l~~~~~kGC~e~--~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~ 292 (483)
T KOG4341|consen 217 KLKYLNLSWCPQISGNGVQ--ALQRGCKELEKLSLKGCLEL--ELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACG 292 (483)
T ss_pred hHHHhhhccCchhhcCcch--HHhccchhhhhhhhcccccc--cHHHHHHHhccChHhhccchhhhccccchHHHHHhhh
Confidence 99999999986 4442221 11222255777777765321 1122221111 015566666664 33221 112245
Q ss_pred CCCCcEEEccCCCC-CC--cchhhcCCCCccEEEeecCCC-CCcchHHhhhcCCCCCCCCCCcEEEccccccccc--cCC
Q 047190 288 MASLRHLDLLSNQL-RE--VPKFLGNMSSLKRLVFSYNEL-RGELSEFIQNVSSGSTKNSSLEWLYLAFNEITGT--IPD 361 (1025)
Q Consensus 288 l~~L~~L~Ls~n~l-~~--lp~~l~~l~~L~~L~Ls~n~l-~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~l~~~--~p~ 361 (1025)
+..|+.|+.+++.- +. +-.--.+..+|+.|.++.++- +......++ ...+.|+.+++..+..... +..
T Consensus 293 c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~------rn~~~Le~l~~e~~~~~~d~tL~s 366 (483)
T KOG4341|consen 293 CHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLG------RNCPHLERLDLEECGLITDGTLAS 366 (483)
T ss_pred hhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhh------cCChhhhhhcccccceehhhhHhh
Confidence 78899999998754 33 223345778999999999873 222111121 2345788888887754322 111
Q ss_pred -CCCCCCCcEEEeecccccCcc-----cccccccCCcceeeccCcccccccchhhhcCCCCCcEEECCCCc
Q 047190 362 -LGGFPSLQILSLENNRLTGTI-----SKSIGQLSKLELLLLSGNSLRGVISEALFSNLSSLDTLQLSDNS 426 (1025)
Q Consensus 362 -l~~l~~L~~L~L~~n~l~~~~-----p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~ 426 (1025)
-.+++.|+++.+++|...... ...-..+..|+.+.|+++..........+..+++|+.+++.+++
T Consensus 367 ls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 367 LSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ 437 (483)
T ss_pred hccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence 356778888888877543221 11123355677777777776544333345566666666666553
No 58
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.57 E-value=3.4e-05 Score=92.85 Aligned_cols=146 Identities=24% Similarity=0.271 Sum_probs=92.8
Q ss_pred CCCCcEEEccCCCCCCCCCccccc-CcccccccccccccCCC-CcchhccCCCCCCEEecccCCCCCCCCchhcccCCCC
Q 047190 111 LQHLTYLDLSWNNFSGSPIPEFIG-SLGKLSELALSSAQFAG-PIPHQLGNLSKLQVLDLRFNNLFSSGNLDWLSYLSSL 188 (1025)
Q Consensus 111 l~~L~~L~Ls~n~l~~~~~p~~l~-~l~~L~~L~Ls~n~l~~-~~p~~l~~L~~L~~L~Ls~n~i~~~~~~~~l~~l~~L 188 (1025)
-.+|++||+++...-...-|..++ .||+|+.|.+++-.+.. ..-....++++|..||+|+.++ .....+++|++|
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI---~nl~GIS~LknL 197 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNI---SNLSGISRLKNL 197 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCc---cCcHHHhccccH
Confidence 356777888776543222344444 46888888887766643 2334446678888888888765 334667788888
Q ss_pred CeeeccCCcCCCCcchHHhhCCCCCCCEEEcCCCCCCCCCCC---cccccccCCcccEEEccCCCCCCCCchhhh
Q 047190 189 RYLDLADCKLSKFSNWVQVLSNLRSLTNLYLGYCDLPPISTP---SLLHINYSKSLEVIDLSNNYLTNSIYPWLF 260 (1025)
Q Consensus 189 ~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~---~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~ 260 (1025)
++|.+.+-.+....+ ...+-+|++|+.||+|.......... ..+....+|+|+.||.|+..+.+.+.+.+.
T Consensus 198 q~L~mrnLe~e~~~~-l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll 271 (699)
T KOG3665|consen 198 QVLSMRNLEFESYQD-LIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELL 271 (699)
T ss_pred HHHhccCCCCCchhh-HHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHH
Confidence 888887777766443 34456688888888887654433210 012222348999999998888765555443
No 59
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.52 E-value=6.7e-05 Score=55.35 Aligned_cols=36 Identities=39% Similarity=0.610 Sum_probs=16.9
Q ss_pred cCCeEeccCccccccCCCCCCCCCCccEEeCCCCcCC
Q 047190 776 GLVALNLSNNNLTGQITPRIGQLKSLDFLDLSRNHFF 812 (1025)
Q Consensus 776 ~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~ 812 (1025)
+|++|++++|+|+. +|..++++++|+.||+++|+++
T Consensus 2 ~L~~L~l~~N~i~~-l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQITD-LPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-SS-HGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCcc-cCchHhCCCCCCEEEecCCCCC
Confidence 34555555555552 3334555555555555555554
No 60
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.49 E-value=0.00013 Score=53.85 Aligned_cols=36 Identities=36% Similarity=0.572 Sum_probs=20.9
Q ss_pred CCcEEEccCCCCCCcchhhcCCCCccEEEeecCCCC
Q 047190 290 SLRHLDLLSNQLREVPKFLGNMSSLKRLVFSYNELR 325 (1025)
Q Consensus 290 ~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~ 325 (1025)
+|++|++++|+++.+|+.++++++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCC
Confidence 456666666666666555666666666666666555
No 61
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.46 E-value=0.00046 Score=76.57 Aligned_cols=116 Identities=16% Similarity=0.263 Sum_probs=60.8
Q ss_pred CCCCCCCCceeeccCCcccccccccccccCCcccEEEccCc-cccccCCCcccCCCCCCEEEcCCCccc--ccCCccccc
Q 047190 529 IPLLPPNVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNN-LLSGRLPDCWFQFDSLAILNLANNSFF--GEIPDSMSF 605 (1025)
Q Consensus 529 ~p~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~Ls~N~l~--~~~p~~~~~ 605 (1025)
+|..|.+|+.|.+++|.--..++... .++|+.|++++| .+. .+|. +|+.|+++.+... +.+|
T Consensus 67 LP~LP~sLtsL~Lsnc~nLtsLP~~L---P~nLe~L~Ls~Cs~L~-sLP~------sLe~L~L~~n~~~~L~~LP----- 131 (426)
T PRK15386 67 LPVLPNELTEITIENCNNLTTLPGSI---PEGLEKLTVCHCPEIS-GLPE------SVRSLEIKGSATDSIKNVP----- 131 (426)
T ss_pred cCCCCCCCcEEEccCCCCcccCCchh---hhhhhheEccCccccc-cccc------ccceEEeCCCCCcccccCc-----
Confidence 34456678888887753322233211 246778888777 443 3443 4666666665442 1222
Q ss_pred ccCCCEEEcccCc-cc-ccCCccccCCCCccEEeCCCCcCccccChhhhhcCCCCcEEEeecC
Q 047190 606 LRSIGSLSLYNNS-LS-GGLPSFFMNGSQLTLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSN 666 (1025)
Q Consensus 606 l~~L~~L~L~~N~-l~-~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N 666 (1025)
++|+.|.+.+++ .. ..+|..+ -++|++|++++|... .+|..+ ..+|+.|+++.|
T Consensus 132 -ssLk~L~I~~~n~~~~~~lp~~L--PsSLk~L~Is~c~~i-~LP~~L---P~SLk~L~ls~n 187 (426)
T PRK15386 132 -NGLTSLSINSYNPENQARIDNLI--SPSLKTLSLTGCSNI-ILPEKL---PESLQSITLHIE 187 (426)
T ss_pred -chHhheecccccccccccccccc--CCcccEEEecCCCcc-cCcccc---cccCcEEEeccc
Confidence 345566664322 11 0111111 156777777777765 455433 346777777665
No 62
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.41 E-value=0.00012 Score=71.34 Aligned_cols=84 Identities=25% Similarity=0.291 Sum_probs=44.4
Q ss_pred CCcEEEccCCCCCCCCCcccccCcccccccccccccCCCCcchhccCCCCCCEEecccCCCCCCCCchhcccCCCCCeee
Q 047190 113 HLTYLDLSWNNFSGSPIPEFIGSLGKLSELALSSAQFAGPIPHQLGNLSKLQVLDLRFNNLFSSGNLDWLSYLSSLRYLD 192 (1025)
Q Consensus 113 ~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~Ls~n~i~~~~~~~~l~~l~~L~~L~ 192 (1025)
....+||++|.+... ..|..+++|.+|.|++|+|+..-|.--..+++|+.|.|.+|++-..+....+..++.|++|.
T Consensus 43 ~~d~iDLtdNdl~~l---~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKL---DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred ccceecccccchhhc---ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence 445566666665432 34455666666666666666444443334455666666666553344444444455555555
Q ss_pred ccCCcCC
Q 047190 193 LADCKLS 199 (1025)
Q Consensus 193 L~~n~l~ 199 (1025)
+-+|.++
T Consensus 120 ll~Npv~ 126 (233)
T KOG1644|consen 120 LLGNPVE 126 (233)
T ss_pred ecCCchh
Confidence 5554443
No 63
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.39 E-value=0.00024 Score=69.30 Aligned_cols=129 Identities=20% Similarity=0.233 Sum_probs=81.6
Q ss_pred cEEEccCCCCCCCCCccccc-CcccccccccccccCCCCcchhccCCCCCCEEecccCCCCCCCCchhcccCCCCCeeec
Q 047190 115 TYLDLSWNNFSGSPIPEFIG-SLGKLSELALSSAQFAGPIPHQLGNLSKLQVLDLRFNNLFSSGNLDWLSYLSSLRYLDL 193 (1025)
Q Consensus 115 ~~L~Ls~n~l~~~~~p~~l~-~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~Ls~n~i~~~~~~~~l~~l~~L~~L~L 193 (1025)
+.++|.+.++..+ +-++ .+.+...+||++|.+.. + ..|..+++|.+|.|++|.|.. ..+..-.-+++|+.|.|
T Consensus 22 ~e~~LR~lkip~i---enlg~~~d~~d~iDLtdNdl~~-l-~~lp~l~rL~tLll~nNrIt~-I~p~L~~~~p~l~~L~L 95 (233)
T KOG1644|consen 22 RELDLRGLKIPVI---ENLGATLDQFDAIDLTDNDLRK-L-DNLPHLPRLHTLLLNNNRITR-IDPDLDTFLPNLKTLIL 95 (233)
T ss_pred cccccccccccch---hhccccccccceecccccchhh-c-ccCCCccccceEEecCCccee-eccchhhhccccceEEe
Confidence 4555555554321 1122 13456678888888762 2 346778888888888888733 22333345677888888
Q ss_pred cCCcCCCCcchHHhhCCCCCCCEEEcCCCCCCCCCCCcccccccCCcccEEEccCCC
Q 047190 194 ADCKLSKFSNWVQVLSNLRSLTNLYLGYCDLPPISTPSLLHINYSKSLEVIDLSNNY 250 (1025)
Q Consensus 194 ~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~ 250 (1025)
.+|++..+.+ ...+..++.|++|.+-+|.++.............++|++||...-.
T Consensus 96 tnNsi~~l~d-l~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 96 TNNSIQELGD-LDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred cCcchhhhhh-cchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence 8888877654 3557778888888888887766554433333333778888776543
No 64
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.36 E-value=0.00013 Score=87.83 Aligned_cols=23 Identities=22% Similarity=0.226 Sum_probs=13.9
Q ss_pred CCCCccEEEeecCCCCCcchHHh
Q 047190 310 NMSSLKRLVFSYNELRGELSEFI 332 (1025)
Q Consensus 310 ~l~~L~~L~Ls~n~l~~~~~~~~ 332 (1025)
.+++|+.||.|++.+.+.+-+.+
T Consensus 248 ~LpeLrfLDcSgTdi~~~~le~l 270 (699)
T KOG3665|consen 248 VLPELRFLDCSGTDINEEILEEL 270 (699)
T ss_pred cCccccEEecCCcchhHHHHHHH
Confidence 35677777777666665544433
No 65
>PF01582 TIR: TIR domain; InterPro: IPR000157 In Drosophila melanogaster the Toll protein is involved in establishment of dorso-ventral polarity in the embryo. In addition, members of the Toll family play a key role in innate antibacterial and antifungal immunity in insects as well as in mammals. These proteins are type-I transmembrane receptors that share an intracellular 200 residue domain with the interleukin-1 receptor (IL-1R), the Toll/IL-1R homologous region (TIR). The similarity between Toll-like receptors (LTRs) and IL-1R is not restricted to sequence homology since these proteins also share a similar signalling pathway. They both induce the activation of a Rel type transcription factor via an adaptor protein and a protein kinase []. Interestingly, MyD88, a cytoplasmic adaptor protein found in mammals, contains a TIR domain associated to a DEATH domain (see IPR000488 from INTERPRO) [, , ]. Besides the mammalian and Drosophila melanogaster proteins, a TIR domain is also found in a number of plant proteins implicated in host defence []. As MyD88, these proteins are cytoplasmic. Site directed mutagenesis and deletion analysis have shown that the TIR domain is essential for Toll and IL-1R activities. Sequence analysis have revealed the presence of three highly conserved regions among the different members of the family: box 1 (FDAFISY), box 2 (GYKLC-RD-PG), and box 3 (a conserved W surrounded by basic residues). It has been proposed that boxes 1 and 2 are involved in the binding of proteins involved in signalling, whereas box 3 is primarily involved in directing localization of receptor, perhaps through interactions with cytoskeletal elements [].; GO: 0005515 protein binding, 0007165 signal transduction, 0005622 intracellular; PDB: 3J0A_A 2J67_B 3JRN_A 1FYV_A 1O77_D 1FYX_A 1FYW_A 3OZI_B 1T3G_B 2JS7_A ....
Probab=97.06 E-value=8.9e-06 Score=78.40 Aligned_cols=68 Identities=12% Similarity=0.241 Sum_probs=54.7
Q ss_pred hHHHHH-hhhheeehhhhHHHHHHHHhhhccccccCc-----------cccccchhhhhhhhhccceeeeccCCCCCccc
Q 047190 927 YYNFLT-RVKDWLYVEAVVNIAKLQRRIQAAPEVHGW-----------HSLDQSKLLLLVYLRKILLIRTFSNLSPCETV 994 (1025)
Q Consensus 927 ~~~~~~-~~~~~~~~~~~~~l~~~~~~~~lc~~~rd~-----------~si~~s~~~~~v~s~~~~r~~t~~e~~~~t~~ 994 (1025)
|..|.. ++.+|+..++.+.||+....+++|.++||+ .+|++||++|+|+|++|++ ++|+.++..
T Consensus 2 fisy~~~~d~~~~~~~L~~~Le~~~~g~~~c~~~rD~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~----s~wc~~el~ 77 (141)
T PF01582_consen 2 FISYSGKDDREWFVSHLLPELEERPYGYKLCLDERDFLPGESILDNIQEAIERSRRTIVVLSRNYLS----SEWCLFELQ 77 (141)
T ss_dssp EEEE-GHHGHHHHHHCHHHHHHCTSSTS-EEEHHHCTSSSSCHHHHHHHHHHTEEEEEEEESHHHHH----HTHHHHHHH
T ss_pred EEEeCCCCcHHHHHHHHHHHHHhCCCCeEEEEechhhcccccccchhhHhhhhceeeEEEeeccccc----ccchhhhhh
Confidence 344555 789999999999999987789999999999 5899999999999999999 666655554
Q ss_pred cccc
Q 047190 995 PAEQ 998 (1025)
Q Consensus 995 f~~~ 998 (1025)
.+.+
T Consensus 78 ~a~~ 81 (141)
T PF01582_consen 78 EALE 81 (141)
T ss_dssp HHHH
T ss_pred hhhh
Confidence 4433
No 66
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.00 E-value=0.00026 Score=72.32 Aligned_cols=114 Identities=21% Similarity=0.225 Sum_probs=72.8
Q ss_pred CcccccCcccccccccccccCCCCcchhccCCCCCCEEecccCCCCCC-CCchhcccCCCCCeeeccCCcCCCCcchHHh
Q 047190 129 IPEFIGSLGKLSELALSSAQFAGPIPHQLGNLSKLQVLDLRFNNLFSS-GNLDWLSYLSSLRYLDLADCKLSKFSNWVQV 207 (1025)
Q Consensus 129 ~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~Ls~n~i~~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~ 207 (1025)
+....-.+..|+.|.+.+..++. -..+..|++|++|++|.|+.... +.......+++|++|++++|++..+.. ...
T Consensus 35 ~~gl~d~~~~le~ls~~n~gltt--~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lst-l~p 111 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVGLTT--LTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLST-LRP 111 (260)
T ss_pred cccccccccchhhhhhhccceee--cccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccc-cch
Confidence 34444456677777777776652 23466788999999999943222 222334456899999999998876433 345
Q ss_pred hCCCCCCCEEEcCCCCCCCCCCCcccccccCCcccEEE
Q 047190 208 LSNLRSLTNLYLGYCDLPPISTPSLLHINYSKSLEVID 245 (1025)
Q Consensus 208 l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~ 245 (1025)
+..+.+|..|++.+|..+.........+.++++|++||
T Consensus 112 l~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD 149 (260)
T KOG2739|consen 112 LKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLD 149 (260)
T ss_pred hhhhcchhhhhcccCCccccccHHHHHHHHhhhhcccc
Confidence 66777788888888876664443333344445666554
No 67
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.79 E-value=0.0028 Score=59.88 Aligned_cols=101 Identities=21% Similarity=0.214 Sum_probs=40.6
Q ss_pred CCcccEEEccCccccccCCCcccCCCCCCEEEcCCCcccccCCcccccccCCCEEEcccCcccccCCccccCCCCccEEe
Q 047190 558 SHLLTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMD 637 (1025)
Q Consensus 558 ~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ 637 (1025)
++.|+.+.+.+ .+......+|.++++|+.+.+.++ +.......|..+.+++.+.+.+ .+.......|..+++|+.++
T Consensus 11 ~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~ 87 (129)
T PF13306_consen 11 CSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNID 87 (129)
T ss_dssp -TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEE
T ss_pred CCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccc
Confidence 34556666553 344444555556656666666553 4434444455555555555543 33323334455555555555
Q ss_pred CCCCcCccccChhhhhcCCCCcEEEee
Q 047190 638 LGKNGLSGEIPTWIGESLPNLVVLSLR 664 (1025)
Q Consensus 638 Ls~N~l~g~ip~~~~~~l~~L~~L~L~ 664 (1025)
+..+ +. .++...+... +|+.+.+.
T Consensus 88 ~~~~-~~-~i~~~~f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 88 IPSN-IT-EIGSSSFSNC-NLKEINIP 111 (129)
T ss_dssp ETTT--B-EEHTTTTTT--T--EEE-T
T ss_pred cCcc-cc-EEchhhhcCC-CceEEEEC
Confidence 5443 33 3443333333 55555444
No 68
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.66 E-value=0.0041 Score=58.76 Aligned_cols=124 Identities=19% Similarity=0.209 Sum_probs=73.6
Q ss_pred CCcccCCCCCCEEEcCCCcccccCCcccccccCCCEEEcccCcccccCCccccCCCCccEEeCCCCcCccccChhhhhcC
Q 047190 576 PDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGKNGLSGEIPTWIGESL 655 (1025)
Q Consensus 576 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l 655 (1025)
..+|.++++|+.+.+.. .+.......|..+++|+.+.+.++ +.......|.++++|+.+.+.+ .+. .++...+..+
T Consensus 5 ~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~-~i~~~~F~~~ 80 (129)
T PF13306_consen 5 NNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLK-SIGDNAFSNC 80 (129)
T ss_dssp TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT--EE-TTTTTT-
T ss_pred HHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccc-cccccccccc
Confidence 45788888999999985 576666778888989999999885 7666667899998999999976 444 5677677568
Q ss_pred CCCcEEEeecCcCcccCcccccccCcccEEEccccccccccCccccCcccc
Q 047190 656 PNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPKCFHNFTAM 706 (1025)
Q Consensus 656 ~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l 706 (1025)
++|+.+++..+ +.......+.+. .|+.+.+.. .+......+|.++++|
T Consensus 81 ~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 81 TNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp TTECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred ccccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 99999999776 655556677776 889888876 5554555666666554
No 69
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.22 E-value=0.00022 Score=72.68 Aligned_cols=83 Identities=23% Similarity=0.257 Sum_probs=39.1
Q ss_pred CCCCCCEEecccCCCCCCCCchhcccCCCCCeeeccCCcCCCCcchHHhhCCCCCCCEEEcCCCCCCCCCCCc--ccccc
Q 047190 159 NLSKLQVLDLRFNNLFSSGNLDWLSYLSSLRYLDLADCKLSKFSNWVQVLSNLRSLTNLYLGYCDLPPISTPS--LLHIN 236 (1025)
Q Consensus 159 ~L~~L~~L~Ls~n~i~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~--~~~~~ 236 (1025)
+|+.|++|.||-|+| .....+..|++|++|+|..|.|.++.+ ..-+.++++|+.|.|..|.-.+..+.. .....
T Consensus 39 kMp~lEVLsLSvNkI---ssL~pl~rCtrLkElYLRkN~I~sldE-L~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR 114 (388)
T KOG2123|consen 39 KMPLLEVLSLSVNKI---SSLAPLQRCTRLKELYLRKNCIESLDE-LEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLR 114 (388)
T ss_pred hcccceeEEeecccc---ccchhHHHHHHHHHHHHHhcccccHHH-HHHHhcCchhhhHhhccCCcccccchhHHHHHHH
Confidence 344444444444443 222334455555555555555555433 334555666666666555544433321 11122
Q ss_pred cCCcccEEE
Q 047190 237 YSKSLEVID 245 (1025)
Q Consensus 237 ~~~~L~~L~ 245 (1025)
.+|+|+.||
T Consensus 115 ~LPnLkKLD 123 (388)
T KOG2123|consen 115 VLPNLKKLD 123 (388)
T ss_pred Hcccchhcc
Confidence 236666665
No 70
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.78 E-value=0.00072 Score=69.07 Aligned_cols=83 Identities=24% Similarity=0.270 Sum_probs=52.6
Q ss_pred CCcEEEccccccccccCCCCCCCCCcEEEeecccccCcccccccccCCcceeeccCcccccccchhhhcCCCCCcEEECC
Q 047190 344 SLEWLYLAFNEITGTIPDLGGFPSLQILSLENNRLTGTISKSIGQLSKLELLLLSGNSLRGVISEALFSNLSSLDTLQLS 423 (1025)
Q Consensus 344 ~L~~L~L~~n~l~~~~p~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls 423 (1025)
+.+.|+.-+|.++ .+.-...++.|++|.|+-|+|+..- .+..|++|++|+|..|.|...-....+.++|+|+.|.|.
T Consensus 20 ~vkKLNcwg~~L~-DIsic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ 96 (388)
T KOG2123|consen 20 NVKKLNCWGCGLD-DISICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLD 96 (388)
T ss_pred HhhhhcccCCCcc-HHHHHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhc
Confidence 4455555555554 2333456667777777777776443 366777888888888887754444456777777777777
Q ss_pred CCcccc
Q 047190 424 DNSLTL 429 (1025)
Q Consensus 424 ~n~l~~ 429 (1025)
.|+-.+
T Consensus 97 ENPCc~ 102 (388)
T KOG2123|consen 97 ENPCCG 102 (388)
T ss_pred cCCccc
Confidence 776443
No 71
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.21 E-value=0.007 Score=37.09 Aligned_cols=18 Identities=56% Similarity=0.905 Sum_probs=7.8
Q ss_pred ccEEeCCCCcCCCcCcccc
Q 047190 801 LDFLDLSRNHFFGGIPSSL 819 (1025)
Q Consensus 801 L~~LdLs~N~l~g~ip~~l 819 (1025)
|++||||+|+++ .||.+|
T Consensus 2 L~~Ldls~n~l~-~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSF 19 (22)
T ss_dssp ESEEEETSSEES-EEGTTT
T ss_pred ccEEECCCCcCE-eCChhh
Confidence 344444444444 344333
No 72
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.01 E-value=0.0086 Score=71.04 Aligned_cols=116 Identities=25% Similarity=0.216 Sum_probs=77.0
Q ss_pred cCCCCCcEEEccCCC-CCCCCCcccccCcccccccccccc-cCCCCc----chhccCCCCCCEEecccCCCCCCCCchhc
Q 047190 109 LKLQHLTYLDLSWNN-FSGSPIPEFIGSLGKLSELALSSA-QFAGPI----PHQLGNLSKLQVLDLRFNNLFSSGNLDWL 182 (1025)
Q Consensus 109 ~~l~~L~~L~Ls~n~-l~~~~~p~~l~~l~~L~~L~Ls~n-~l~~~~----p~~l~~L~~L~~L~Ls~n~i~~~~~~~~l 182 (1025)
...+.|+.|.+..+. +....+-.....+++|+.|+++++ ...... ......+++|+.|+++++...+......+
T Consensus 185 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l 264 (482)
T KOG1947|consen 185 SSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSAL 264 (482)
T ss_pred hhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHH
Confidence 347888888888763 332223355667889999999873 221111 23345678899999998873233334444
Q ss_pred c-cCCCCCeeeccCCc-CCCCcchHHhhCCCCCCCEEEcCCCCCC
Q 047190 183 S-YLSSLRYLDLADCK-LSKFSNWVQVLSNLRSLTNLYLGYCDLP 225 (1025)
Q Consensus 183 ~-~l~~L~~L~L~~n~-l~~~~~~~~~l~~l~~L~~L~L~~n~l~ 225 (1025)
. .+++|++|.+.++. +++. .+.....++++|++|++++|...
T Consensus 265 ~~~c~~L~~L~l~~c~~lt~~-gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 265 ASRCPNLETLSLSNCSNLTDE-GLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred HhhCCCcceEccCCCCccchh-HHHHHHHhcCcccEEeeecCccc
Confidence 4 48899999988776 4442 45566677899999999988754
No 73
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=94.95 E-value=0.012 Score=69.70 Aligned_cols=115 Identities=23% Similarity=0.227 Sum_probs=48.4
Q ss_pred cCCCCCeeeccCCcCCCCcchHHhhCCCCCCCEEEcCCC-CCCCCCC-CcccccccCCcccEEEccCCC-CCCCCchhhh
Q 047190 184 YLSSLRYLDLADCKLSKFSNWVQVLSNLRSLTNLYLGYC-DLPPIST-PSLLHINYSKSLEVIDLSNNY-LTNSIYPWLF 260 (1025)
Q Consensus 184 ~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n-~l~~~~~-~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~l~ 260 (1025)
.++.|+.|.+.++.-............++.|+.|+++++ ......+ ........+++|+.|+++++. +++.....+.
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 356666666665532221113344555666666666652 1111111 001122222555555555554 3333333332
Q ss_pred h-cCCCCccEEEcCCCC-CCCCchh-hhhCCCCCcEEEccCCC
Q 047190 261 N-VSSNLVDHIDLGSNQ-LHGSIPL-AFGHMASLRHLDLLSNQ 300 (1025)
Q Consensus 261 ~-l~~~~L~~L~Ls~n~-l~~~~p~-~~~~l~~L~~L~Ls~n~ 300 (1025)
. .+. |++|.+..+. ++...-. ....++.|++|+++++.
T Consensus 266 ~~c~~--L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 266 SRCPN--LETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH 306 (482)
T ss_pred hhCCC--cceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence 2 233 5555544444 3322111 22334455555555543
No 74
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.78 E-value=0.013 Score=35.86 Aligned_cols=20 Identities=45% Similarity=0.557 Sum_probs=13.3
Q ss_pred CCeEeccCccccccCCCCCCC
Q 047190 777 LVALNLSNNNLTGQITPRIGQ 797 (1025)
Q Consensus 777 L~~L~Ls~N~l~g~ip~~~~~ 797 (1025)
|++|||++|+|+ .+|.+|++
T Consensus 2 L~~Ldls~n~l~-~ip~~~~~ 21 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFSN 21 (22)
T ss_dssp ESEEEETSSEES-EEGTTTTT
T ss_pred ccEEECCCCcCE-eCChhhcC
Confidence 567777777777 56665654
No 75
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=93.76 E-value=0.0011 Score=76.59 Aligned_cols=61 Identities=31% Similarity=0.308 Sum_probs=35.5
Q ss_pred CcEEEcccccccccc-----CCCCCC-CCCcEEEeecccccCccc----ccccccCCcceeeccCcccccc
Q 047190 345 LEWLYLAFNEITGTI-----PDLGGF-PSLQILSLENNRLTGTIS----KSIGQLSKLELLLLSGNSLRGV 405 (1025)
Q Consensus 345 L~~L~L~~n~l~~~~-----p~l~~l-~~L~~L~L~~n~l~~~~p----~~l~~l~~L~~L~L~~N~l~~~ 405 (1025)
+..+++..|.+.... |.+..+ ..+++++++.|.|+.... ..+..++.++++.+++|.+...
T Consensus 235 ~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~ 305 (478)
T KOG4308|consen 235 LRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDY 305 (478)
T ss_pred hHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccH
Confidence 444555555554221 123344 566777777777664433 3445567888888888887644
No 76
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=93.21 E-value=0.0036 Score=72.45 Aligned_cols=36 Identities=42% Similarity=0.333 Sum_probs=18.2
Q ss_pred CCcEEEccccccccccCC-----CCCCCCCcEEEeeccccc
Q 047190 344 SLEWLYLAFNEITGTIPD-----LGGFPSLQILSLENNRLT 379 (1025)
Q Consensus 344 ~L~~L~L~~n~l~~~~p~-----l~~l~~L~~L~L~~n~l~ 379 (1025)
.+++++++.|.++..-.. +..++.++++.+++|.+.
T Consensus 263 ~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 263 TLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred hhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence 445555555555432221 334456666666666554
No 77
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=88.69 E-value=0.24 Score=28.09 Aligned_cols=13 Identities=38% Similarity=0.621 Sum_probs=4.6
Q ss_pred CccEEeCCCCcCc
Q 047190 632 QLTLMDLGKNGLS 644 (1025)
Q Consensus 632 ~L~~L~Ls~N~l~ 644 (1025)
+|+.|+|++|+++
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 3444444444443
No 78
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=88.53 E-value=0.3 Score=27.75 Aligned_cols=15 Identities=47% Similarity=0.709 Sum_probs=6.1
Q ss_pred CCcEEEccCCCCCCc
Q 047190 290 SLRHLDLLSNQLREV 304 (1025)
Q Consensus 290 ~L~~L~Ls~n~l~~l 304 (1025)
+|+.|++++|+++.+
T Consensus 2 ~L~~L~l~~n~L~~l 16 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSL 16 (17)
T ss_dssp T-SEEEETSS--SSE
T ss_pred ccCEEECCCCCCCCC
Confidence 455555555555444
No 79
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=87.68 E-value=0.49 Score=30.22 Aligned_cols=22 Identities=32% Similarity=0.306 Sum_probs=15.2
Q ss_pred CCCccEEeCCCCcCccccChhhh
Q 047190 630 GSQLTLMDLGKNGLSGEIPTWIG 652 (1025)
Q Consensus 630 l~~L~~L~Ls~N~l~g~ip~~~~ 652 (1025)
+++|+.|+|++|+++ .+|...+
T Consensus 1 L~~L~~L~L~~N~l~-~lp~~~f 22 (26)
T smart00370 1 LPNLRELDLSNNQLS-SLPPGAF 22 (26)
T ss_pred CCCCCEEECCCCcCC-cCCHHHc
Confidence 356777777777777 6776655
No 80
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=87.68 E-value=0.49 Score=30.22 Aligned_cols=22 Identities=32% Similarity=0.306 Sum_probs=15.2
Q ss_pred CCCccEEeCCCCcCccccChhhh
Q 047190 630 GSQLTLMDLGKNGLSGEIPTWIG 652 (1025)
Q Consensus 630 l~~L~~L~Ls~N~l~g~ip~~~~ 652 (1025)
+++|+.|+|++|+++ .+|...+
T Consensus 1 L~~L~~L~L~~N~l~-~lp~~~f 22 (26)
T smart00369 1 LPNLRELDLSNNQLS-SLPPGAF 22 (26)
T ss_pred CCCCCEEECCCCcCC-cCCHHHc
Confidence 356777777777777 6776655
No 81
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.78 E-value=0.11 Score=51.45 Aligned_cols=80 Identities=24% Similarity=0.282 Sum_probs=37.7
Q ss_pred ccccccccccCCCCcchhccCCCCCCEEecccCCCCCCCCchhccc-CCCCCeeeccCC-cCCCCcchHHhhCCCCCCCE
Q 047190 139 LSELALSSAQFAGPIPHQLGNLSKLQVLDLRFNNLFSSGNLDWLSY-LSSLRYLDLADC-KLSKFSNWVQVLSNLRSLTN 216 (1025)
Q Consensus 139 L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~Ls~n~i~~~~~~~~l~~-l~~L~~L~L~~n-~l~~~~~~~~~l~~l~~L~~ 216 (1025)
++.+|-++..|..+.-+.+.+++.++.|.+.+|.-+...-.+.+++ .++|+.|++++| +||+. ....+..+++|+.
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~--GL~~L~~lknLr~ 180 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDG--GLACLLKLKNLRR 180 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechh--HHHHHHHhhhhHH
Confidence 3445555555544444455555555555555554322222222222 345666666655 34442 2334445555555
Q ss_pred EEcC
Q 047190 217 LYLG 220 (1025)
Q Consensus 217 L~L~ 220 (1025)
|.+.
T Consensus 181 L~l~ 184 (221)
T KOG3864|consen 181 LHLY 184 (221)
T ss_pred HHhc
Confidence 5444
No 82
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=85.83 E-value=0.052 Score=54.49 Aligned_cols=81 Identities=19% Similarity=0.160 Sum_probs=48.3
Q ss_pred CcEEEEECCCCCCCCCCcccccccccCcCCCCCcEEEccCCCCCCCCCcccccCcccccccccccccCCCCcchhccCCC
Q 047190 82 GHVLGLDLRASSDSPVDALKGTINPSLLKLQHLTYLDLSWNNFSGSPIPEFIGSLGKLSELALSSAQFAGPIPHQLGNLS 161 (1025)
Q Consensus 82 ~~v~~L~L~~~~~~~~~~l~g~l~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~L~ 161 (1025)
.+|+.||++.. .+. .+-.-++.++.|..||++.|.+. .+|..++.+..++.+++..|..+ ..|.+++.++
T Consensus 42 kr~tvld~~s~------r~v-n~~~n~s~~t~~~rl~~sknq~~--~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~ 111 (326)
T KOG0473|consen 42 KRVTVLDLSSN------RLV-NLGKNFSILTRLVRLDLSKNQIK--FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEP 111 (326)
T ss_pred ceeeeehhhhh------HHH-hhccchHHHHHHHHHhccHhhHh--hChhhHHHHHHHHHHHhhccchh-hCCccccccC
Confidence 36666776651 111 11233455666666677666665 35666666666666766666655 4666666666
Q ss_pred CCCEEecccCC
Q 047190 162 KLQVLDLRFNN 172 (1025)
Q Consensus 162 ~L~~L~Ls~n~ 172 (1025)
+++++++-+|.
T Consensus 112 ~~k~~e~k~~~ 122 (326)
T KOG0473|consen 112 HPKKNEQKKTE 122 (326)
T ss_pred CcchhhhccCc
Confidence 66666666654
No 83
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=85.01 E-value=0.053 Score=54.39 Aligned_cols=82 Identities=22% Similarity=0.204 Sum_probs=70.4
Q ss_pred ceeEEEcccCCCCCcChhhHhhcccCCeEeccCccccccCCCCCCCCCCccEEeCCCCcCCCcCcccccCCCCCCEEECc
Q 047190 752 LIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSRNHFFGGIPSSLSRLRLLSVMDLS 831 (1025)
Q Consensus 752 ~l~~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~Ldls 831 (1025)
..+.||+|.|++-. .-..|.-++.|..||+|.|++. ..|..++++..+..+++..|..+ ..|.++...+.+.++++-
T Consensus 43 r~tvld~~s~r~vn-~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k 119 (326)
T KOG0473|consen 43 RVTVLDLSSNRLVN-LGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQK 119 (326)
T ss_pred eeeeehhhhhHHHh-hccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhc
Confidence 44889999999852 3456777889999999999988 67888999999999999999988 568999999999999999
Q ss_pred CCccc
Q 047190 832 YNNFS 836 (1025)
Q Consensus 832 ~N~l~ 836 (1025)
.|+|.
T Consensus 120 ~~~~~ 124 (326)
T KOG0473|consen 120 KTEFF 124 (326)
T ss_pred cCcch
Confidence 99875
No 84
>smart00255 TIR Toll - interleukin 1 - resistance.
Probab=84.88 E-value=0.13 Score=49.29 Aligned_cols=61 Identities=15% Similarity=0.143 Sum_probs=51.4
Q ss_pred heeehhhhHHHHHHHHhhhccccccCc-----------cccccchhhhhhhhhccceeeeccCCCCCcccccccCC
Q 047190 936 DWLYVEAVVNIAKLQRRIQAAPEVHGW-----------HSLDQSKLLLLVYLRKILLIRTFSNLSPCETVPAEQNS 1000 (1025)
Q Consensus 936 ~~~~~~~~~~l~~~~~~~~lc~~~rd~-----------~si~~s~~~~~v~s~~~~r~~t~~e~~~~t~~f~~~~~ 1000 (1025)
+|+..+++..|+......+.|...+|+ +.+++|+++|+|+|++|++ ++|++.+-.+.-+..
T Consensus 12 ~~~~~~~v~~L~~~l~~~~~~v~~d~~~~~~~~~~~i~~~i~~s~~~i~vlS~~~~~----S~w~~~E~~~a~~~~ 83 (140)
T smart00255 12 EDVRNEFLSHLLEKLRGYGLCVFIDDFEPGGGDLEEIDEAIEKSRIAIVVLSPNYAE----SEWCLDELVAALENA 83 (140)
T ss_pred HHHHHHHHHHHHHHhhcCCcEEEecCcccccchHHHHHHHHHHCcEEEEEECccccc----ChhHHHHHHHHHHHH
Confidence 577788999999988888999988888 6888999999999999999 777777777665544
No 85
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=84.71 E-value=0.75 Score=29.34 Aligned_cols=16 Identities=38% Similarity=0.324 Sum_probs=10.0
Q ss_pred CCccEEeCCCCcCCCc
Q 047190 799 KSLDFLDLSRNHFFGG 814 (1025)
Q Consensus 799 ~~L~~LdLs~N~l~g~ 814 (1025)
++|++|+|++|+|+..
T Consensus 2 ~~L~~L~L~~N~l~~l 17 (26)
T smart00370 2 PNLRELDLSNNQLSSL 17 (26)
T ss_pred CCCCEEECCCCcCCcC
Confidence 4566666666666644
No 86
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=84.71 E-value=0.75 Score=29.34 Aligned_cols=16 Identities=38% Similarity=0.324 Sum_probs=10.0
Q ss_pred CCccEEeCCCCcCCCc
Q 047190 799 KSLDFLDLSRNHFFGG 814 (1025)
Q Consensus 799 ~~L~~LdLs~N~l~g~ 814 (1025)
++|++|+|++|+|+..
T Consensus 2 ~~L~~L~L~~N~l~~l 17 (26)
T smart00369 2 PNLRELDLSNNQLSSL 17 (26)
T ss_pred CCCCEEECCCCcCCcC
Confidence 4566666666666644
No 87
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.81 E-value=0.41 Score=47.50 Aligned_cols=81 Identities=26% Similarity=0.187 Sum_probs=47.5
Q ss_pred CCccEEEeecCCCCCcchHHhhhcCCCCCCCCCCcEEEcccccccccc--CCC-CCCCCCcEEEeecc-cccCccccccc
Q 047190 312 SSLKRLVFSYNELRGELSEFIQNVSSGSTKNSSLEWLYLAFNEITGTI--PDL-GGFPSLQILSLENN-RLTGTISKSIG 387 (1025)
Q Consensus 312 ~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~l~~~~--p~l-~~l~~L~~L~L~~n-~l~~~~p~~l~ 387 (1025)
..++.+|-+++.|..+.-+.+.+++ .++.|.+.+|.--+.. ..+ +-.++|+.|++++| +||+..-..+.
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~~l~-------~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~ 173 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLRDLR-------SIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLL 173 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHhccc-------hhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHH
Confidence 3566777777777666666666655 6777777666432111 001 13466777777766 45555445556
Q ss_pred ccCCcceeeccC
Q 047190 388 QLSKLELLLLSG 399 (1025)
Q Consensus 388 ~l~~L~~L~L~~ 399 (1025)
.+++|+.|.+.+
T Consensus 174 ~lknLr~L~l~~ 185 (221)
T KOG3864|consen 174 KLKNLRRLHLYD 185 (221)
T ss_pred HhhhhHHHHhcC
Confidence 666666666644
No 88
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=73.83 E-value=1.3 Score=27.57 Aligned_cols=15 Identities=27% Similarity=0.525 Sum_probs=6.5
Q ss_pred CCccEEeCCCCcCcc
Q 047190 631 SQLTLMDLGKNGLSG 645 (1025)
Q Consensus 631 ~~L~~L~Ls~N~l~g 645 (1025)
++|++|+|++|++++
T Consensus 2 ~~L~~L~l~~n~i~~ 16 (24)
T PF13516_consen 2 PNLETLDLSNNQITD 16 (24)
T ss_dssp TT-SEEE-TSSBEHH
T ss_pred CCCCEEEccCCcCCH
Confidence 345555555555543
No 89
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=66.95 E-value=4.4 Score=25.95 Aligned_cols=14 Identities=43% Similarity=0.532 Sum_probs=9.8
Q ss_pred CCccEEeCCCCcCC
Q 047190 799 KSLDFLDLSRNHFF 812 (1025)
Q Consensus 799 ~~L~~LdLs~N~l~ 812 (1025)
++|+.|+|++|+|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 46777777777775
No 90
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=58.97 E-value=71 Score=36.40 Aligned_cols=32 Identities=19% Similarity=0.040 Sum_probs=17.9
Q ss_pred CCcEEEccccccccccCC---CCCCCCCcEEEeec
Q 047190 344 SLEWLYLAFNEITGTIPD---LGGFPSLQILSLEN 375 (1025)
Q Consensus 344 ~L~~L~L~~n~l~~~~p~---l~~l~~L~~L~L~~ 375 (1025)
.+++|.+.+|++.+.... ...-++.+.+++..
T Consensus 355 R~q~l~~rdnnldgeg~~vgk~~~s~s~r~l~agr 389 (553)
T KOG4242|consen 355 RVQVLLQRDNNLDGEGGAVGKRKQSKSGRILKAGR 389 (553)
T ss_pred eeeEeeccccccccccccccceeeccccccccccc
Confidence 467777777776665544 23334455555443
No 91
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=58.06 E-value=6.5 Score=25.14 Aligned_cols=17 Identities=24% Similarity=0.556 Sum_probs=11.7
Q ss_pred CccEEeCCCCcCccccCh
Q 047190 632 QLTLMDLGKNGLSGEIPT 649 (1025)
Q Consensus 632 ~L~~L~Ls~N~l~g~ip~ 649 (1025)
+|+.|++++|+++ .+|+
T Consensus 3 ~L~~L~vs~N~Lt-~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLT-SLPE 19 (26)
T ss_pred ccceeecCCCccc-cCcc
Confidence 5677777777776 6664
No 92
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=53.67 E-value=9.8 Score=24.78 Aligned_cols=13 Identities=54% Similarity=0.473 Sum_probs=8.2
Q ss_pred CccEEeCCCCcCC
Q 047190 800 SLDFLDLSRNHFF 812 (1025)
Q Consensus 800 ~L~~LdLs~N~l~ 812 (1025)
+|++|||++|.+.
T Consensus 3 ~L~~LdL~~N~i~ 15 (28)
T smart00368 3 SLRELDLSNNKLG 15 (28)
T ss_pred ccCEEECCCCCCC
Confidence 5666666666664
No 93
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=49.84 E-value=69 Score=36.50 Aligned_cols=115 Identities=15% Similarity=0.020 Sum_probs=61.3
Q ss_pred CcccEEEccCCCCCCCCchhhhhcCCCCccEEEcCCCCC-----CCCchhhhh----CCCCCcEEEccCCCCCCcc----
Q 047190 239 KSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQL-----HGSIPLAFG----HMASLRHLDLLSNQLREVP---- 305 (1025)
Q Consensus 239 ~~L~~L~Ls~n~l~~~~~~~l~~l~~~~L~~L~Ls~n~l-----~~~~p~~~~----~l~~L~~L~Ls~n~l~~lp---- 305 (1025)
..+++|+...|.+.+..........+...+.+++..-.- .+....... ..--+..+.++.+.+..-+
T Consensus 354 ~R~q~l~~rdnnldgeg~~vgk~~~s~s~r~l~agrs~~kqvm~s~~~a~~v~k~~~~~g~l~el~ls~~~lka~l~s~i 433 (553)
T KOG4242|consen 354 QRVQVLLQRDNNLDGEGGAVGKRKQSKSGRILKAGRSGDKQVMDSSTEAPPVSKKSRTHGVLAELSLSPGPLKAGLESAI 433 (553)
T ss_pred eeeeEeeccccccccccccccceeeccccccccccccCCceeccccccchhhhhhhcccccccCcccCCCcccccHHHHH
Confidence 468889998888877654433211111255555544322 111111111 1123677888888777633
Q ss_pred hhhcCCCCccEEEeecCCCCCcchHHhhhcCCCCCCCCCCcEEEccccccc
Q 047190 306 KFLGNMSSLKRLVFSYNELRGELSEFIQNVSSGSTKNSSLEWLYLAFNEIT 356 (1025)
Q Consensus 306 ~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~l~ 356 (1025)
..+..-+.+..|++++|.........+ +........++.+..+.|...
T Consensus 434 n~l~stqtl~kldisgn~mgd~gap~l---pkalq~n~rlr~ipds~n~p~ 481 (553)
T KOG4242|consen 434 NKLLSTQTLAKLDISGNGMGDGGAPPL---PKALQSNCRLRPIPDSLNLPE 481 (553)
T ss_pred HhhccCcccccccccCCCcccCCCCcC---ccccCCCCccCCCCCCCCCcc
Confidence 234455778899999987654322111 112222336777777766543
No 94
>KOG1187 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=48.26 E-value=3.8 Score=46.14 Aligned_cols=23 Identities=17% Similarity=0.065 Sum_probs=21.0
Q ss_pred cceeeeccCCCCCcccccccCCc
Q 047190 979 ILLIRTFSNLSPCETVPAEQNSP 1001 (1025)
Q Consensus 979 ~~r~~t~~e~~~~t~~f~~~~~~ 1001 (1025)
..+.|||+||++.|+||+++|--
T Consensus 61 ~~~~fs~~el~~AT~~Fs~~~~i 83 (361)
T KOG1187|consen 61 PLRSFSYDELRKATNNFSESNLI 83 (361)
T ss_pred CcceeeHHHHHHHHhCCchhcce
Confidence 68999999999999999998853
No 95
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=42.01 E-value=15 Score=42.45 Aligned_cols=14 Identities=43% Similarity=0.470 Sum_probs=8.6
Q ss_pred CCcEEEeecccccC
Q 047190 367 SLQILSLENNRLTG 380 (1025)
Q Consensus 367 ~L~~L~L~~n~l~~ 380 (1025)
.|++|.+.+|.+..
T Consensus 271 ~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 271 PLEELVLEGNPLCT 284 (585)
T ss_pred CHHHeeecCCcccc
Confidence 45666666666653
No 96
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=38.02 E-value=23 Score=31.04 Aligned_cols=19 Identities=47% Similarity=0.721 Sum_probs=11.7
Q ss_pred CcchhHHHHHHHHHHHHHHH
Q 047190 1 MSSKCFLLLQYVSLISVILF 20 (1025)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~ 20 (1025)
|.||.|+|+.+ +|++++++
T Consensus 1 MaSK~~llL~l-~LA~lLli 19 (95)
T PF07172_consen 1 MASKAFLLLGL-LLAALLLI 19 (95)
T ss_pred CchhHHHHHHH-HHHHHHHH
Confidence 88999888633 33333333
No 97
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=37.29 E-value=21 Score=49.49 Aligned_cols=33 Identities=30% Similarity=0.299 Sum_probs=28.7
Q ss_pred eccCccccccCCCCCCCCCCccEEeCCCCcCCC
Q 047190 781 NLSNNNLTGQITPRIGQLKSLDFLDLSRNHFFG 813 (1025)
Q Consensus 781 ~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g 813 (1025)
||++|+|+...+..|..+.+|+.|+|++|.+.-
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~C 33 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFEC 33 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCcccc
Confidence 688999998888888999999999999998763
No 98
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=35.38 E-value=26 Score=40.55 Aligned_cols=14 Identities=36% Similarity=0.316 Sum_probs=8.3
Q ss_pred CCcEEEccCCCCCC
Q 047190 290 SLRHLDLLSNQLRE 303 (1025)
Q Consensus 290 ~L~~L~Ls~n~l~~ 303 (1025)
.|++|-+.+|.+.+
T Consensus 271 ~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 271 PLEELVLEGNPLCT 284 (585)
T ss_pred CHHHeeecCCcccc
Confidence 35666666666554
No 99
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=34.60 E-value=20 Score=33.97 Aligned_cols=39 Identities=23% Similarity=0.176 Sum_probs=21.6
Q ss_pred ccchhhhhhhhhccceeeeccCCCCCcccccccCCcccc
Q 047190 966 DQSKLLLLVYLRKILLIRTFSNLSPCETVPAEQNSPQAT 1004 (1025)
Q Consensus 966 ~~s~~~~~v~s~~~~r~~t~~e~~~~t~~f~~~~~~~~~ 1004 (1025)
++--|.|-....+.+-..||.=+=|-+.+--|.|+|-..
T Consensus 84 dSdGkvvtay~~n~~~~~w~~l~Gk~~~~~y~s~splg~ 122 (154)
T PF04478_consen 84 DSDGKVVTAYRSNKLTKWWYSLLGKKISDKYESNSPLGS 122 (154)
T ss_pred cCCCcEEEEEcCchHHHHHHHHhCCccccccccCCCCCC
Confidence 334455556666666666776665554333355666544
No 100
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=27.72 E-value=62 Score=23.23 Aligned_cols=9 Identities=11% Similarity=0.194 Sum_probs=3.6
Q ss_pred eeehhhhHH
Q 047190 900 MSMILGFFV 908 (1025)
Q Consensus 900 ~~~~~~~~~ 908 (1025)
+++++.+++
T Consensus 15 ~~VvVPV~v 23 (40)
T PF08693_consen 15 VGVVVPVGV 23 (40)
T ss_pred EEEEechHH
Confidence 344444433
No 101
>PF15102 TMEM154: TMEM154 protein family
Probab=26.13 E-value=1e+02 Score=29.23 Aligned_cols=24 Identities=17% Similarity=0.248 Sum_probs=17.9
Q ss_pred cccccccCCcccccccCCCCchhh
Q 047190 992 ETVPAEQNSPQATMDASVPSVPDL 1015 (1025)
Q Consensus 992 t~~f~~~~~~~~~~~~~~~~~~~~ 1015 (1025)
|.--.-+|-++.-..-.+|||+.+
T Consensus 102 t~e~~~Env~~PiFEedtpsvmei 125 (146)
T PF15102_consen 102 TYELGSENVKVPIFEEDTPSVMEI 125 (146)
T ss_pred ccccCcccccccccccCCcchhhh
Confidence 333566788888888999999853
No 102
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=22.13 E-value=62 Score=45.26 Aligned_cols=32 Identities=25% Similarity=0.240 Sum_probs=18.8
Q ss_pred EcccCcccccCCccccCCCCccEEeCCCCcCc
Q 047190 613 SLYNNSLSGGLPSFFMNGSQLTLMDLGKNGLS 644 (1025)
Q Consensus 613 ~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 644 (1025)
||++|+|+...+..|..+.+|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 35566666555555666666666666666554
No 103
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=20.72 E-value=46 Score=21.04 Aligned_cols=10 Identities=40% Similarity=0.331 Sum_probs=4.1
Q ss_pred CCCEEecccC
Q 047190 162 KLQVLDLRFN 171 (1025)
Q Consensus 162 ~L~~L~Ls~n 171 (1025)
+|++|+|++|
T Consensus 3 ~L~~L~l~~C 12 (26)
T smart00367 3 NLRELDLSGC 12 (26)
T ss_pred CCCEeCCCCC
Confidence 3444444443
Done!