Query 047190
Match_columns 1025
No_of_seqs 949 out of 5926
Neff 9.4
Searched_HMMs 29240
Date Mon Mar 25 14:58:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047190.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047190hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 8.3E-91 2.9E-95 867.2 46.2 709 34-871 8-751 (768)
2 3rgz_A Protein brassinosteroid 100.0 3.5E-69 1.2E-73 672.3 36.8 616 104-838 92-743 (768)
3 3j0a_A TOLL-like receptor 5; m 100.0 2.3E-63 7.9E-68 626.3 31.4 689 116-1006 8-763 (844)
4 1ziw_A TOLL-like receptor 3; i 100.0 7.2E-58 2.5E-62 565.4 50.7 609 86-841 8-627 (680)
5 1ziw_A TOLL-like receptor 3; i 100.0 5.3E-55 1.8E-59 539.8 52.2 572 82-816 25-626 (680)
6 3t6q_A CD180 antigen; protein- 100.0 2.3E-52 7.9E-57 509.2 42.8 532 103-841 26-565 (606)
7 4eco_A Uncharacterized protein 100.0 7E-53 2.4E-57 513.2 23.9 290 35-403 27-366 (636)
8 3vq2_A TLR4, TOLL-like recepto 100.0 6E-51 2E-55 496.7 38.4 528 103-841 25-563 (606)
9 3t6q_A CD180 antigen; protein- 100.0 5.1E-51 1.7E-55 497.3 37.7 514 239-863 33-564 (606)
10 3j0a_A TOLL-like receptor 5; m 100.0 1.9E-50 6.4E-55 508.7 37.4 518 239-865 24-566 (844)
11 3vq2_A TLR4, TOLL-like recepto 100.0 4.2E-50 1.4E-54 489.2 36.0 526 242-864 14-563 (606)
12 4ecn_A Leucine-rich repeat pro 100.0 2E-48 6.8E-53 480.4 32.2 517 33-693 264-864 (876)
13 2z63_A TOLL-like receptor 4, v 100.0 1.1E-45 3.6E-50 447.2 33.7 490 267-844 30-539 (570)
14 2z63_A TOLL-like receptor 4, v 100.0 1E-44 3.5E-49 438.5 38.9 490 112-817 28-536 (570)
15 2z81_A CD282 antigen, TOLL-lik 100.0 1.6E-44 5.4E-49 434.7 31.0 493 212-841 5-515 (549)
16 4g8a_A TOLL-like receptor 4; l 100.0 4.4E-43 1.5E-47 430.1 40.4 523 104-840 46-584 (635)
17 2z7x_B TOLL-like receptor 1, v 100.0 1.7E-44 5.8E-49 431.1 26.0 463 216-840 4-485 (520)
18 2z81_A CD282 antigen, TOLL-lik 100.0 1.1E-43 3.7E-48 427.4 30.3 492 186-816 5-514 (549)
19 4eco_A Uncharacterized protein 100.0 2.3E-44 8E-49 438.1 19.7 438 267-838 83-602 (636)
20 2z7x_B TOLL-like receptor 1, v 100.0 4.6E-43 1.6E-47 418.7 21.2 455 268-863 3-485 (520)
21 4ecn_A Leucine-rich repeat pro 100.0 1.5E-42 5.3E-47 428.0 23.2 353 353-838 435-842 (876)
22 4g8a_A TOLL-like receptor 4; l 100.0 7.3E-41 2.5E-45 410.4 37.2 509 267-863 54-584 (635)
23 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.4E-41 4.7E-46 409.4 28.3 463 214-841 33-515 (562)
24 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 8.3E-40 2.8E-44 393.9 24.6 249 558-863 248-514 (562)
25 1jl5_A Outer protein YOPM; leu 100.0 3.3E-39 1.1E-43 375.4 21.5 246 106-428 5-250 (454)
26 3v47_A TOLL-like receptor 5B a 100.0 7.8E-38 2.7E-42 366.9 28.7 390 347-845 14-417 (455)
27 3v47_A TOLL-like receptor 5B a 100.0 8.9E-37 3E-41 358.0 33.8 391 242-698 13-413 (455)
28 1jl5_A Outer protein YOPM; leu 100.0 8.7E-38 3E-42 363.5 22.8 82 239-326 11-105 (454)
29 1ogq_A PGIP-2, polygalacturona 100.0 2.3E-38 8E-43 350.7 16.0 292 34-426 2-302 (313)
30 3bz5_A Internalin-J, INLJ; leu 100.0 1.1E-34 3.7E-39 337.7 26.8 410 129-701 34-451 (457)
31 3bz5_A Internalin-J, INLJ; leu 100.0 1E-34 3.4E-39 337.9 26.3 182 559-842 212-393 (457)
32 1ogq_A PGIP-2, polygalacturona 100.0 3.7E-35 1.3E-39 325.0 18.3 259 559-868 50-312 (313)
33 1o6v_A Internalin A; bacterial 100.0 3.7E-33 1.3E-37 327.6 34.5 142 267-427 48-189 (466)
34 1o6v_A Internalin A; bacterial 100.0 2.6E-33 9E-38 328.8 30.8 214 559-838 177-390 (466)
35 2id5_A Lingo-1, leucine rich r 100.0 4E-34 1.4E-38 337.3 22.8 258 559-864 104-361 (477)
36 2id5_A Lingo-1, leucine rich r 100.0 3.2E-32 1.1E-36 321.0 24.5 235 558-841 127-361 (477)
37 3o6n_A APL1; leucine-rich repe 100.0 9.6E-32 3.3E-36 308.1 24.6 238 559-863 141-378 (390)
38 3oja_B Anopheles plasmodium-re 100.0 7.4E-32 2.5E-36 326.2 24.8 238 559-863 147-384 (597)
39 3o6n_A APL1; leucine-rich repe 100.0 1.9E-30 6.4E-35 297.4 24.7 314 109-480 42-356 (390)
40 4fmz_A Internalin; leucine ric 100.0 1.7E-29 5.8E-34 284.7 29.4 305 287-693 42-346 (347)
41 4fmz_A Internalin; leucine ric 100.0 3.2E-29 1.1E-33 282.4 30.6 284 109-428 41-324 (347)
42 3oja_B Anopheles plasmodium-re 100.0 2.7E-29 9.4E-34 303.7 26.1 310 288-696 50-361 (597)
43 4fcg_A Uncharacterized protein 100.0 2.4E-30 8.2E-35 288.0 13.7 270 33-322 22-311 (328)
44 1z7x_W Ribonuclease inhibitor; 100.0 4E-32 1.4E-36 318.9 -2.3 137 559-695 199-356 (461)
45 1z7x_W Ribonuclease inhibitor; 100.0 3.1E-31 1E-35 311.4 1.6 385 112-501 3-440 (461)
46 2ft3_A Biglycan; proteoglycan, 100.0 1.9E-28 6.5E-33 274.0 23.8 220 559-834 102-331 (332)
47 1xku_A Decorin; proteoglycan, 100.0 3.9E-28 1.3E-32 271.3 25.3 219 561-834 102-330 (330)
48 1xku_A Decorin; proteoglycan, 100.0 5.7E-27 2E-31 261.9 27.6 248 533-836 51-306 (330)
49 4fcg_A Uncharacterized protein 100.0 1E-27 3.4E-32 266.9 19.5 227 558-836 80-314 (328)
50 2ft3_A Biglycan; proteoglycan, 100.0 3.6E-27 1.2E-31 263.6 23.7 287 344-691 34-331 (332)
51 2z66_A Variable lymphocyte rec 99.9 2.6E-27 8.9E-32 261.6 19.2 234 559-840 28-265 (306)
52 3zyi_A Leucine-rich repeat-con 99.9 1.6E-26 5.5E-31 269.9 24.7 232 559-840 75-307 (452)
53 3ogk_B Coronatine-insensitive 99.9 1E-28 3.5E-33 299.7 6.2 39 283-321 214-252 (592)
54 2z80_A TOLL-like receptor 2, v 99.9 1.9E-27 6.6E-32 268.3 15.0 273 519-841 37-319 (353)
55 3zyj_A Leucine-rich repeat-con 99.9 2.3E-26 8E-31 267.5 23.7 232 559-840 64-296 (440)
56 1ozn_A Reticulon 4 receptor; N 99.9 5.1E-27 1.8E-31 256.4 16.9 229 562-841 14-243 (285)
57 2z66_A Variable lymphocyte rec 99.9 3E-27 1E-31 261.2 14.9 274 518-841 12-292 (306)
58 2z80_A TOLL-like receptor 2, v 99.9 7.1E-27 2.4E-31 263.7 18.0 276 535-863 32-318 (353)
59 3ogk_B Coronatine-insensitive 99.9 4.7E-28 1.6E-32 293.9 6.5 381 364-838 110-528 (592)
60 3zyj_A Leucine-rich repeat-con 99.9 1E-25 3.5E-30 262.2 23.1 250 561-863 45-296 (440)
61 1ozn_A Reticulon 4 receptor; N 99.9 1.5E-26 5.1E-31 252.7 14.8 235 559-842 32-267 (285)
62 1wwl_A Monocyte differentiatio 99.9 1.1E-27 3.7E-32 265.1 5.6 246 534-838 43-311 (312)
63 3zyi_A Leucine-rich repeat-con 99.9 2.3E-25 7.9E-30 260.1 23.0 247 518-814 59-305 (452)
64 2z62_A TOLL-like receptor 4, v 99.9 1.9E-24 6.6E-29 234.7 22.2 228 563-842 11-243 (276)
65 1wwl_A Monocyte differentiatio 99.9 2.1E-26 7.2E-31 254.7 6.6 244 558-858 42-308 (312)
66 3oja_A Leucine-rich immune mol 99.9 5.5E-26 1.9E-30 266.8 9.7 220 559-840 34-255 (487)
67 3g06_A SSPH2 (leucine-rich rep 99.9 4.5E-24 1.5E-28 255.3 26.2 224 532-841 79-302 (622)
68 3o53_A Protein LRIM1, AGAP0063 99.9 3.5E-26 1.2E-30 253.6 7.3 221 559-841 58-281 (317)
69 3g06_A SSPH2 (leucine-rich rep 99.9 3.7E-24 1.3E-28 256.0 23.1 210 532-823 99-308 (622)
70 3oja_A Leucine-rich immune mol 99.9 3.9E-25 1.3E-29 259.5 11.3 236 533-831 33-270 (487)
71 3o53_A Protein LRIM1, AGAP0063 99.9 2.4E-25 8.1E-30 246.9 7.3 241 133-400 30-272 (317)
72 2p1m_B Transport inhibitor res 99.9 6.7E-26 2.3E-30 275.1 2.0 89 580-669 429-519 (594)
73 2o6q_A Variable lymphocyte rec 99.9 3.5E-23 1.2E-27 223.8 21.8 205 561-840 18-222 (270)
74 2p1m_B Transport inhibitor res 99.9 1.3E-25 4.4E-30 272.5 1.8 314 68-428 33-385 (594)
75 2z62_A TOLL-like receptor 4, v 99.9 2.6E-23 9.1E-28 225.7 18.9 213 559-816 28-241 (276)
76 1p9a_G Platelet glycoprotein I 99.9 1.1E-22 3.8E-27 221.7 19.9 206 579-839 6-211 (290)
77 3rfs_A Internalin B, repeat mo 99.9 1.3E-23 4.6E-28 227.3 12.3 222 560-842 20-241 (272)
78 2o6q_A Variable lymphocyte rec 99.9 2.6E-22 9.1E-27 216.9 21.3 205 534-814 16-220 (270)
79 3rfs_A Internalin B, repeat mo 99.9 2.8E-23 9.7E-28 224.7 13.4 226 536-823 21-246 (272)
80 1p9a_G Platelet glycoprotein I 99.9 1.1E-21 3.7E-26 213.9 19.2 203 557-814 8-210 (290)
81 4glp_A Monocyte differentiatio 99.9 1.1E-22 3.9E-27 224.6 10.9 230 535-837 65-308 (310)
82 2ca6_A RAN GTPase-activating p 99.9 1.7E-23 5.9E-28 239.0 4.4 236 558-840 31-320 (386)
83 3goz_A Leucine-rich repeat-con 99.9 3E-23 1E-27 234.6 6.2 255 540-838 4-299 (362)
84 3m19_A Variable lymphocyte rec 99.9 8.6E-22 2.9E-26 210.4 14.9 192 632-872 36-233 (251)
85 4glp_A Monocyte differentiatio 99.9 1.1E-22 3.8E-27 224.7 8.2 201 606-858 90-306 (310)
86 2xwt_C Thyrotropin receptor; s 99.9 1.2E-21 4.2E-26 207.6 15.7 196 584-833 32-236 (239)
87 3goz_A Leucine-rich repeat-con 99.9 2.9E-22 9.8E-27 226.5 8.8 214 560-820 52-305 (362)
88 1h6u_A Internalin H; cell adhe 99.9 5E-21 1.7E-25 210.9 16.8 192 558-813 40-231 (308)
89 2ca6_A RAN GTPase-activating p 99.9 2E-22 7E-27 230.1 5.5 189 580-816 91-320 (386)
90 2ast_B S-phase kinase-associat 99.9 3.3E-22 1.1E-26 223.9 7.1 254 534-842 47-312 (336)
91 2xwt_C Thyrotropin receptor; s 99.8 6.5E-21 2.2E-25 202.0 15.7 197 559-810 31-237 (239)
92 1h6u_A Internalin H; cell adhe 99.8 6.1E-21 2.1E-25 210.2 15.5 212 561-838 21-232 (308)
93 3m19_A Variable lymphocyte rec 99.8 2.5E-20 8.6E-25 199.0 18.0 180 560-814 15-194 (251)
94 2ast_B S-phase kinase-associat 99.8 1.5E-21 5.3E-26 218.4 8.3 211 559-821 93-315 (336)
95 3cvr_A Invasion plasmid antige 99.8 1.4E-19 4.9E-24 213.6 16.4 189 559-823 59-254 (571)
96 3cvr_A Invasion plasmid antige 99.8 9.6E-20 3.3E-24 215.0 14.6 134 535-693 60-193 (571)
97 2o6s_A Variable lymphocyte rec 99.8 2.6E-19 8.8E-24 185.2 15.4 137 562-702 10-146 (208)
98 4ay9_X Follicle-stimulating ho 99.8 6.4E-19 2.2E-23 197.9 19.1 224 559-835 30-258 (350)
99 2o6s_A Variable lymphocyte rec 99.8 1.6E-19 5.4E-24 186.8 12.3 81 754-841 103-183 (208)
100 2v70_A SLIT-2, SLIT homolog 2 99.8 4.3E-19 1.5E-23 184.9 15.3 157 634-841 14-171 (220)
101 4ay9_X Follicle-stimulating ho 99.8 1.4E-18 4.6E-23 195.3 16.0 244 562-860 12-259 (350)
102 2v9t_B SLIT homolog 2 protein 99.8 1.6E-18 5.6E-23 180.5 14.5 155 634-839 14-168 (220)
103 3e6j_A Variable lymphocyte rec 99.8 5.1E-18 1.7E-22 178.0 14.5 156 633-840 21-176 (229)
104 2v70_A SLIT-2, SLIT homolog 2 99.7 6E-18 2.1E-22 176.2 14.0 137 633-816 34-170 (220)
105 1h6t_A Internalin B; cell adhe 99.7 9.2E-18 3.1E-22 183.0 15.7 189 561-837 26-214 (291)
106 1h6t_A Internalin B; cell adhe 99.7 2.1E-18 7.1E-23 188.1 10.0 148 536-697 26-173 (291)
107 1m9s_A Internalin B; cell inva 99.7 3.2E-18 1.1E-22 204.6 12.0 192 535-791 22-213 (605)
108 2xot_A Amphoterin-induced prot 99.7 3.4E-18 1.2E-22 192.8 11.6 178 586-838 21-204 (361)
109 1m9s_A Internalin B; cell inva 99.7 2.2E-17 7.5E-22 197.3 17.2 190 561-814 23-212 (605)
110 1dce_A Protein (RAB geranylger 99.7 2E-20 6.7E-25 222.4 -9.4 36 558-594 348-383 (567)
111 1dce_A Protein (RAB geranylger 99.7 6.8E-20 2.3E-24 217.7 -5.8 191 109-361 346-551 (567)
112 2xot_A Amphoterin-induced prot 99.7 3.7E-17 1.3E-21 184.3 15.0 176 518-694 23-203 (361)
113 4b8c_D Glucose-repressible alc 99.7 5.1E-18 1.8E-22 208.1 8.1 192 591-841 209-409 (727)
114 2v9t_B SLIT homolog 2 protein 99.7 6.5E-17 2.2E-21 168.4 14.5 141 562-706 14-154 (220)
115 4b8c_D Glucose-repressible alc 99.7 3.9E-18 1.3E-22 209.2 4.8 192 564-813 206-405 (727)
116 4ezg_A Putative uncharacterize 99.7 5.6E-17 1.9E-21 165.9 12.5 154 629-837 42-195 (197)
117 1w8a_A SLIT protein; signaling 99.7 1.5E-17 5.3E-22 169.2 8.2 88 754-841 57-144 (192)
118 3e6j_A Variable lymphocyte rec 99.7 2E-16 7E-21 165.8 16.3 137 559-697 40-176 (229)
119 1xeu_A Internalin C; cellular 99.7 2.7E-17 9.1E-22 176.4 8.7 169 607-838 19-187 (263)
120 4ezg_A Putative uncharacterize 99.7 1E-16 3.6E-21 163.9 12.2 154 605-813 42-195 (197)
121 1w8a_A SLIT protein; signaling 99.7 5.4E-17 1.9E-21 165.1 9.5 132 634-816 11-143 (192)
122 1xeu_A Internalin C; cellular 99.7 2.9E-17 9.9E-22 176.1 5.7 123 559-693 19-141 (263)
123 2ell_A Acidic leucine-rich nuc 99.6 3.3E-15 1.1E-19 148.5 10.6 134 655-837 23-161 (168)
124 3sb4_A Hypothetical leucine ri 99.6 5E-15 1.7E-19 164.6 12.6 219 558-829 100-327 (329)
125 2wfh_A SLIT homolog 2 protein 99.6 8.3E-15 2.9E-19 148.8 12.9 87 754-840 57-143 (193)
126 3sb4_A Hypothetical leucine ri 99.6 1.4E-14 4.7E-19 161.0 15.1 264 344-662 50-327 (329)
127 2je0_A Acidic leucine-rich nuc 99.6 3.2E-15 1.1E-19 145.3 8.4 129 655-832 16-149 (149)
128 2o6r_A Variable lymphocyte rec 99.6 1.1E-14 3.8E-19 146.0 12.3 87 754-840 55-141 (177)
129 2ell_A Acidic leucine-rich nuc 99.6 7E-15 2.4E-19 146.1 10.5 135 559-698 24-164 (168)
130 2wfh_A SLIT homolog 2 protein 99.5 2.3E-14 7.7E-19 145.6 12.5 129 634-814 13-141 (193)
131 2o6r_A Variable lymphocyte rec 99.5 2.3E-14 7.9E-19 143.6 12.4 133 633-816 9-141 (177)
132 2je0_A Acidic leucine-rich nuc 99.5 1.3E-14 4.5E-19 140.9 9.8 128 559-689 17-149 (149)
133 1ds9_A Outer arm dynein; leuci 99.5 6.6E-16 2.2E-20 158.1 -2.7 152 630-836 17-185 (198)
134 1ds9_A Outer arm dynein; leuci 99.5 2.8E-15 9.6E-20 153.3 -2.1 151 608-813 19-186 (198)
135 1a9n_A U2A', U2A'; complex (nu 99.4 2.7E-13 9.2E-18 135.6 10.1 130 558-694 18-154 (176)
136 3g39_A Variable lymphocyte rec 99.4 4.3E-13 1.5E-17 133.1 10.9 88 754-841 33-120 (170)
137 4fdw_A Leucine rich hypothetic 99.4 4.4E-12 1.5E-16 143.9 20.2 219 560-835 158-382 (401)
138 1a9n_A U2A', U2A'; complex (nu 99.4 2.1E-13 7E-18 136.5 8.1 81 754-836 67-153 (176)
139 2r9u_A Variable lymphocyte rec 99.4 1.3E-12 4.4E-17 130.1 10.9 87 754-840 36-122 (174)
140 4fdw_A Leucine rich hypothetic 99.3 1.4E-11 4.8E-16 139.7 18.5 200 557-812 178-383 (401)
141 4fs7_A Uncharacterized protein 99.3 5.4E-11 1.9E-15 135.5 19.6 83 578-664 292-374 (394)
142 3g39_A Variable lymphocyte rec 99.3 8.5E-12 2.9E-16 123.7 11.2 105 561-669 11-115 (170)
143 3un9_A NLR family member X1; l 99.3 1.5E-13 5.3E-18 154.3 -3.2 63 631-693 101-168 (372)
144 2r9u_A Variable lymphocyte rec 99.3 1.6E-11 5.3E-16 122.2 11.3 104 562-693 15-118 (174)
145 4fs7_A Uncharacterized protein 99.2 3.9E-10 1.3E-14 128.3 20.1 141 557-707 251-391 (394)
146 3un9_A NLR family member X1; l 99.2 1.4E-12 4.9E-17 146.4 -2.5 64 631-694 126-197 (372)
147 2ifg_A High affinity nerve gro 99.2 5.4E-11 1.8E-15 133.1 9.9 85 754-839 34-119 (347)
148 2ifg_A High affinity nerve gro 99.1 2.5E-10 8.4E-15 127.7 9.6 106 562-671 11-118 (347)
149 4gt6_A Cell surface protein; l 98.9 5.6E-08 1.9E-12 110.4 22.9 82 362-446 59-144 (394)
150 4gt6_A Cell surface protein; l 98.9 1E-07 3.4E-12 108.3 24.6 127 557-691 263-389 (394)
151 2ra8_A Uncharacterized protein 98.8 5.1E-09 1.7E-13 116.4 6.3 83 750-834 251-341 (362)
152 2ra8_A Uncharacterized protein 98.6 1.5E-07 5E-12 104.6 12.9 141 280-429 163-321 (362)
153 4h09_A Hypothetical leucine ri 98.6 2.5E-06 8.4E-11 96.3 21.8 141 558-704 216-356 (379)
154 4h09_A Hypothetical leucine ri 98.4 1.7E-05 5.8E-10 89.3 22.6 49 385-436 41-89 (379)
155 3rw6_A Nuclear RNA export fact 98.3 1E-07 3.5E-12 100.2 1.0 62 753-816 172-237 (267)
156 1io0_A Tropomodulin; LRR prote 98.3 7.6E-08 2.6E-12 96.4 -0.4 122 102-223 26-162 (185)
157 3rw6_A Nuclear RNA export fact 98.2 3E-07 1E-11 96.7 2.5 84 756-841 148-238 (267)
158 1io0_A Tropomodulin; LRR prote 98.2 9.2E-07 3.2E-11 88.4 4.0 71 283-356 30-106 (185)
159 3e4g_A ATP synthase subunit S, 97.9 5.6E-06 1.9E-10 80.5 3.3 84 112-196 61-149 (176)
160 3e4g_A ATP synthase subunit S, 97.8 6.7E-06 2.3E-10 79.9 2.4 85 137-223 61-150 (176)
161 3ub2_A TOLL/interleukin-1 rece 97.0 1.8E-05 6.2E-10 74.8 -5.4 68 929-1001 16-94 (146)
162 2j67_A TOLL like receptor 10; 97.0 6.2E-06 2.1E-10 80.8 -9.0 70 927-1000 39-119 (178)
163 3rfe_A Platelet glycoprotein I 96.9 0.0016 5.6E-08 60.2 6.8 58 779-838 12-70 (130)
164 1t3g_A X-linked interleukin-1 96.8 1.9E-05 6.6E-10 75.9 -7.0 68 927-999 6-96 (159)
165 1fyx_A TOLL-like receptor 2; b 96.8 1.1E-05 3.7E-10 76.9 -8.9 70 927-1000 9-89 (149)
166 1pgv_A TMD-1, tropomodulin TMD 96.8 0.001 3.5E-08 65.8 5.0 34 288-321 97-135 (197)
167 1pgv_A TMD-1, tropomodulin TMD 96.7 0.0007 2.4E-08 67.0 2.9 16 287-302 68-83 (197)
168 2js7_A Myeloid differentiation 96.3 5.8E-05 2E-09 72.6 -7.5 65 932-1001 25-101 (160)
169 3rfe_A Platelet glycoprotein I 95.6 0.017 5.8E-07 53.2 6.5 35 633-668 33-67 (130)
170 3ozi_A L6TR; plant TIR domain, 59.2 0.35 1.2E-05 47.4 -5.3 52 938-991 51-114 (204)
171 3h16_A TIR protein; bacteria T 55.7 0.64 2.2E-05 43.9 -4.1 51 937-993 34-95 (154)
172 3jrn_A AT1G72930 protein; TIR 43.6 1.2 4.3E-05 42.6 -4.2 46 937-984 23-79 (176)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=8.3e-91 Score=867.19 Aligned_cols=709 Identities=30% Similarity=0.433 Sum_probs=565.2
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCcccceEecCCCCcEEEEECCCCCCCCCCccccc---ccccCcC
Q 047190 34 SCLDEEKESLLAFKQGLIDESGILSSWGREDEKRNCCKWRGVRCSNKTGHVLGLDLRASSDSPVDALKGT---INPSLLK 110 (1025)
Q Consensus 34 ~~~~~~~~~ll~~k~~~~~~~~~l~~W~~~~~~~~~c~w~gv~C~~~~~~v~~L~L~~~~~~~~~~l~g~---l~~~l~~ 110 (1025)
.+.++|++||++||+++.||. .+++|+ .+.+||+|+||+|+ +|||++|||++ ..+.|. +|+++.+
T Consensus 8 ~~~~~~~~all~~k~~~~~~~-~l~~W~---~~~~~C~w~gv~C~--~~~v~~L~L~~------~~l~g~~~~l~~~l~~ 75 (768)
T 3rgz_A 8 QSLYREIHQLISFKDVLPDKN-LLPDWS---SNKNPCTFDGVTCR--DDKVTSIDLSS------KPLNVGFSAVSSSLLS 75 (768)
T ss_dssp CCHHHHHHHHHHHHTTCSCTT-SSTTCC---TTSCGGGSTTEEEE--TTEEEEEECTT------SCCCEEHHHHHHHTTT
T ss_pred cCCHHHHHHHHHHHhhCCCcc-cccCCC---CCCCCcCCcceEEC--CCcEEEEECCC------CCcCCccCccChhHhc
Confidence 457899999999999999988 899997 47799999999998 69999999998 678898 9999999
Q ss_pred CCCCcEEEccCCCCCCCCCcccccCcccccccccccccCCCCcch--hccCCCCCCEEecccCCCCCCCCchhcccCCCC
Q 047190 111 LQHLTYLDLSWNNFSGSPIPEFIGSLGKLSELALSSAQFAGPIPH--QLGNLSKLQVLDLRFNNLFSSGNLDWLSYLSSL 188 (1025)
Q Consensus 111 l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~--~l~~L~~L~~L~Ls~n~i~~~~~~~~l~~l~~L 188 (1025)
+++|+.++++.+.+. ++|+.++++++|++|+|++|.++|.+|. .++++++|++|+|++|.+........+.++++|
T Consensus 76 L~~L~~l~~~~~~~~--~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L 153 (768)
T 3rgz_A 76 LTGLESLFLSNSHIN--GSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSL 153 (768)
T ss_dssp CTTCCEEECTTSCEE--ECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTC
T ss_pred cCcccccCCcCCCcC--CCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCC
Confidence 999999999999875 4678999999999999999999999998 999999999999999987443333445889999
Q ss_pred CeeeccCCcCCCCcc-hHHhhCCCCCCCEEEcCCCCCCCCCCCcccccccCCcccEEEccCCCCCCCCchhhhhcCCCCc
Q 047190 189 RYLDLADCKLSKFSN-WVQVLSNLRSLTNLYLGYCDLPPISTPSLLHINYSKSLEVIDLSNNYLTNSIYPWLFNVSSNLV 267 (1025)
Q Consensus 189 ~~L~L~~n~l~~~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~~~L 267 (1025)
++|++++|.+++... ....+.++++|++|++++|.+.+..+. ..+ ++|++|++++|.+++.+|. +..++. |
T Consensus 154 ~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~----~~l-~~L~~L~Ls~n~l~~~~~~-l~~l~~--L 225 (768)
T 3rgz_A 154 EVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV----SRC-VNLEFLDVSSNNFSTGIPF-LGDCSA--L 225 (768)
T ss_dssp SEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBC----TTC-TTCCEEECCSSCCCSCCCB-CTTCCS--C
T ss_pred CEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCc----ccC-CcCCEEECcCCcCCCCCcc-cccCCC--C
Confidence 999999999987532 112378999999999999998876542 333 8888888888888877666 777777 8
Q ss_pred cEEEcCCCCCCCCchhhhhCCCCCcEEEccCCCCCC-cchhhcCCCCccEEEeecCCCCCcchHHhhhc-CCCCCCCCCC
Q 047190 268 DHIDLGSNQLHGSIPLAFGHMASLRHLDLLSNQLRE-VPKFLGNMSSLKRLVFSYNELRGELSEFIQNV-SSGSTKNSSL 345 (1025)
Q Consensus 268 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~-lp~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l-~~~~~~~~~L 345 (1025)
++|++++|.+++.+|..++.+++|++|++++|.+++ +|.. .+++|++|++++|.+.+.+|..+... + +|
T Consensus 226 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~-------~L 296 (768)
T 3rgz_A 226 QHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACD-------TL 296 (768)
T ss_dssp CEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCT-------TC
T ss_pred CEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcC-------cC
Confidence 888888888888888888888888888888888776 4443 67777777777777776666655443 3 77
Q ss_pred cEEEccccccccccCC-CCCCCCCcEEEeecccccCccccc-ccccCCcceeeccCcccccccchhhhcCCC-CCcEEEC
Q 047190 346 EWLYLAFNEITGTIPD-LGGFPSLQILSLENNRLTGTISKS-IGQLSKLELLLLSGNSLRGVISEALFSNLS-SLDTLQL 422 (1025)
Q Consensus 346 ~~L~L~~n~l~~~~p~-l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~-~L~~L~L 422 (1025)
++|+|++|.+++.+|. ++.+++|++|++++|++++.+|.. +..+++|++|++++|.+.+.+|.. +..++ +|++|++
T Consensus 297 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~-l~~l~~~L~~L~L 375 (768)
T 3rgz_A 297 TGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPES-LTNLSASLLTLDL 375 (768)
T ss_dssp SEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTT-HHHHTTTCSEEEC
T ss_pred CEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHH-HHhhhcCCcEEEc
Confidence 7777777777766665 677777777777777777666654 677777777777777777666654 45554 7777777
Q ss_pred CCCccccccccCCCC--CcccceeeccCCCCCCCCchhhhcCCcccEEEccCCCCCCchhhhhhhccccceEEEccCccC
Q 047190 423 SDNSLTLKFSHDWTP--PFQLFNIFLGSCKIGPRFPKWLQSQNQTVALDVSNAGISDIVPDWFWDLTNQLYYLNLSNNEM 500 (1025)
Q Consensus 423 s~n~l~~~~~~~~~~--~~~L~~L~L~~~~l~~~~p~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~N~l 500 (1025)
++|.+++..+..+.. ..+|+.|++++|.+.+.+|.++..+++|+.|++++|.+++..|..+..+. +|++|++++|.+
T Consensus 376 s~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~-~L~~L~L~~n~l 454 (768)
T 3rgz_A 376 SSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLS-KLRDLKLWLNML 454 (768)
T ss_dssp CSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCT-TCCEEECCSSCC
T ss_pred cCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCC-CCCEEECCCCcc
Confidence 777776655555444 55666666666666666666666666666666666666666666555443 455555555555
Q ss_pred CCCCCCccccccCCCCeeecccCcCccCCCCCCCCCceeeccCCcccccccccccccCCcccEEEccCccccccCCCccc
Q 047190 501 KGKLPDLSRKFDSYGPGIDVSSNQFDGPIPLLPPNVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNLLSGRLPDCWF 580 (1025)
Q Consensus 501 ~~~~p~~~~~~l~~~~~l~ls~n~l~g~~p~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~ 580 (1025)
++.+| .... .+++|++|++++|.+++.+|..+.
T Consensus 455 ~~~~p----------------------------------------------~~~~-~l~~L~~L~L~~N~l~~~~p~~l~ 487 (768)
T 3rgz_A 455 EGEIP----------------------------------------------QELM-YVKTLETLILDFNDLTGEIPSGLS 487 (768)
T ss_dssp CSCCC----------------------------------------------GGGG-GCTTCCEEECCSSCCCSCCCGGGG
T ss_pred cCcCC----------------------------------------------HHHc-CCCCceEEEecCCcccCcCCHHHh
Confidence 44333 2111 246788888888888888888888
Q ss_pred CCCCCCEEEcCCCcccccCCcccccccCCCEEEcccCcccccCCccccCCCCccEEeCCCCcCccccChhhhhcCCCCcE
Q 047190 581 QFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGKNGLSGEIPTWIGESLPNLVV 660 (1025)
Q Consensus 581 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~ 660 (1025)
++++|++|++++|++++.+|..++.+++|++|++++|++++.+|..+..+++|+.|++++|+++|.+|.+++ ....+..
T Consensus 488 ~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~-~~~~~~~ 566 (768)
T 3rgz_A 488 NCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMF-KQSGKIA 566 (768)
T ss_dssp GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGG-TTTTCBC
T ss_pred cCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHh-cccchhh
Confidence 888888888888888888888888888888888888888888888888888888888888888888888877 3444433
Q ss_pred EEee---------cC-------------cCcccCcccccccCcccEEEccccccccccCccccCccccccccccCccccc
Q 047190 661 LSLR---------SN-------------KFHGNIPFQLCYLSHIQILDLSLNNISGIIPKCFHNFTAMTKEKSSNLSIIS 718 (1025)
Q Consensus 661 L~L~---------~N-------------~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~ 718 (1025)
+++. ++ .+.+..+..+..++.++.++++.|.++|.+|..++.++.|
T Consensus 567 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L------------ 634 (768)
T 3rgz_A 567 ANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSM------------ 634 (768)
T ss_dssp CSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCC------------
T ss_pred hhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccc------------
Confidence 3222 21 2455666677777788888888888888888877776665
Q ss_pred ccccccccccccceeEeecccCCccceeeccccceeEEEcccCCCCCcChhhHhhcccCCeEeccCccccccCCCCCCCC
Q 047190 719 NYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPRIGQL 798 (1025)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l 798 (1025)
+.||||+|+++|.+|.++++++.|+.|+|++|+++|.||..++.+
T Consensus 635 -----------------------------------~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L 679 (768)
T 3rgz_A 635 -----------------------------------MFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDL 679 (768)
T ss_dssp -----------------------------------CEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGC
T ss_pred -----------------------------------cEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCC
Confidence 889999999999999999999999999999999999999999999
Q ss_pred CCccEEeCCCCcCCCcCcccccCCCCCCEEECcCCcccccCCCCCCCCCcCCCCcCCCCCCCCCCCCCCCCCC
Q 047190 799 KSLDFLDLSRNHFFGGIPSSLSRLRLLSVMDLSYNNFSGKIPKGTQLQRFGASTYAGNPELCGLPLPNKCLDE 871 (1025)
Q Consensus 799 ~~L~~LdLs~N~l~g~ip~~l~~l~~L~~Ldls~N~l~g~ip~~~~~~~~~~~~~~gN~~lcg~~~~~~C~~~ 871 (1025)
++|++||||+|+++|.||..++.+++|++||+|+|+|+|.||.++++.+|+..+|.|||++||.|+. .|...
T Consensus 680 ~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~-~C~~~ 751 (768)
T 3rgz_A 680 RGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLP-RCDPS 751 (768)
T ss_dssp TTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSC-CCCSC
T ss_pred CCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCCCCc-CCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999987 89543
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=3.5e-69 Score=672.29 Aligned_cols=616 Identities=27% Similarity=0.349 Sum_probs=537.7
Q ss_pred ccccCcCCCCCcEEEccCCCCCCCCCcc--cccCcccccccccccccCCCCcchhc-cCCCCCCEEecccCCCCCCCCch
Q 047190 104 INPSLLKLQHLTYLDLSWNNFSGSPIPE--FIGSLGKLSELALSSAQFAGPIPHQL-GNLSKLQVLDLRFNNLFSSGNLD 180 (1025)
Q Consensus 104 l~~~l~~l~~L~~L~Ls~n~l~~~~~p~--~l~~l~~L~~L~Ls~n~l~~~~p~~l-~~L~~L~~L~Ls~n~i~~~~~~~ 180 (1025)
+|..++++++|++|+|++|.+++. +|. .++++++|++|+|++|.+++.+|..+ .++++|++|+|++|.+.. ..+.
T Consensus 92 l~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~ 169 (768)
T 3rgz_A 92 SVSGFKCSASLTSLDLSRNSLSGP-VTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISG-ANVV 169 (768)
T ss_dssp CCCCCCCCTTCCEEECCSSEEEEE-GGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEE-ETHH
T ss_pred CchhhccCCCCCEEECCCCcCCCc-CCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCC-cCCh
Confidence 457899999999999999999985 788 99999999999999999999888776 899999999999998733 2333
Q ss_pred h---cccCCCCCeeeccCCcCCCCcchHHhhCCCCCCCEEEcCCCCCCCCCCCcccccccCCcccEEEccCCCCCCCCch
Q 047190 181 W---LSYLSSLRYLDLADCKLSKFSNWVQVLSNLRSLTNLYLGYCDLPPISTPSLLHINYSKSLEVIDLSNNYLTNSIYP 257 (1025)
Q Consensus 181 ~---l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~ 257 (1025)
. +.++++|++|++++|.+++... +.++++|++|++++|.+.+..+. +.++ ++|++|++++|.+++.+|.
T Consensus 170 ~~~~~~~l~~L~~L~Ls~n~l~~~~~----~~~l~~L~~L~Ls~n~l~~~~~~---l~~l-~~L~~L~Ls~n~l~~~~~~ 241 (768)
T 3rgz_A 170 GWVLSDGCGELKHLAISGNKISGDVD----VSRCVNLEFLDVSSNNFSTGIPF---LGDC-SALQHLDISGNKLSGDFSR 241 (768)
T ss_dssp HHHHTTCCTTCCEEECCSSEEESCCB----CTTCTTCCEEECCSSCCCSCCCB---CTTC-CSCCEEECCSSCCCSCHHH
T ss_pred hhhhhccCCCCCEEECCCCcccccCC----cccCCcCCEEECcCCcCCCCCcc---cccC-CCCCEEECcCCcCCCcccH
Confidence 3 7899999999999999987543 48899999999999999987763 4445 9999999999999999999
Q ss_pred hhhhcCCCCccEEEcCCCCCCCCchhhhhCCCCCcEEEccCCCCCC-cchhhcCC-CCccEEEeecCCCCCcchHHhhhc
Q 047190 258 WLFNVSSNLVDHIDLGSNQLHGSIPLAFGHMASLRHLDLLSNQLRE-VPKFLGNM-SSLKRLVFSYNELRGELSEFIQNV 335 (1025)
Q Consensus 258 ~l~~l~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~-lp~~l~~l-~~L~~L~Ls~n~l~~~~~~~~~~l 335 (1025)
.+..+++ |++|++++|.+.+.+|.. .+++|++|++++|.+++ +|..+... ++|++|++++|.+.+.+|..+..+
T Consensus 242 ~l~~l~~--L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l 317 (768)
T 3rgz_A 242 AISTCTE--LKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSC 317 (768)
T ss_dssp HTTTCSS--CCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGC
T ss_pred HHhcCCC--CCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcC
Confidence 9999999 999999999999888765 89999999999999996 89888775 999999999999999999999988
Q ss_pred CCCCCCCCCCcEEEccccccccccCC--CCCCCCCcEEEeecccccCcccccccccC-CcceeeccCcccccccchhhhc
Q 047190 336 SSGSTKNSSLEWLYLAFNEITGTIPD--LGGFPSLQILSLENNRLTGTISKSIGQLS-KLELLLLSGNSLRGVISEALFS 412 (1025)
Q Consensus 336 ~~~~~~~~~L~~L~L~~n~l~~~~p~--l~~l~~L~~L~L~~n~l~~~~p~~l~~l~-~L~~L~L~~N~l~~~~~~~~~~ 412 (1025)
+ +|++|++++|.+++.+|. +..+++|++|++++|++++.+|..+..++ +|++|++++|.+.+.++.. +.
T Consensus 318 ~-------~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~-~~ 389 (768)
T 3rgz_A 318 S-------LLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPN-LC 389 (768)
T ss_dssp T-------TCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTT-TT
T ss_pred C-------CccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChh-hh
Confidence 8 999999999999988885 89999999999999999999999999997 9999999999999888775 44
Q ss_pred C--CCCCcEEECCCCccccccccCCCCCcccceeeccCCCCCCCCchhhhcCCcccEEEccCCCCCCchhhhhhhccccc
Q 047190 413 N--LSSLDTLQLSDNSLTLKFSHDWTPPFQLFNIFLGSCKIGPRFPKWLQSQNQTVALDVSNAGISDIVPDWFWDLTNQL 490 (1025)
Q Consensus 413 ~--l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~~~p~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~L 490 (1025)
. +++|++|++++|.+++..+..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|.+.+..|..+.... +|
T Consensus 390 ~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~-~L 468 (768)
T 3rgz_A 390 QNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVK-TL 468 (768)
T ss_dssp CSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCT-TC
T ss_pred hcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCC-Cc
Confidence 4 88999999999999999999999999999999999999999999999999999999999999999999988765 78
Q ss_pred eEEEccCccCCCCCCCccccccCCCCeeecccCcCccCCCCCCCCCceeeccCCcccccccccccccCCcccEEEccCcc
Q 047190 491 YYLNLSNNEMKGKLPDLSRKFDSYGPGIDVSSNQFDGPIPLLPPNVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNL 570 (1025)
Q Consensus 491 ~~L~Ls~N~l~~~~p~~~~~~l~~~~~l~ls~n~l~g~~p~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~N~ 570 (1025)
++|++++|++++.+|.... .+++|++|++++|+
T Consensus 469 ~~L~L~~N~l~~~~p~~l~-----------------------------------------------~l~~L~~L~L~~N~ 501 (768)
T 3rgz_A 469 ETLILDFNDLTGEIPSGLS-----------------------------------------------NCTNLNWISLSNNR 501 (768)
T ss_dssp CEEECCSSCCCSCCCGGGG-----------------------------------------------GCTTCCEEECCSSC
T ss_pred eEEEecCCcccCcCCHHHh-----------------------------------------------cCCCCCEEEccCCc
Confidence 9988888888766553211 23667788888888
Q ss_pred ccccCCCcccCCCCCCEEEcCCCcccccCCcccccccCCCEEEcccCcccccCCccccCCCCccEEeCCCC---------
Q 047190 571 LSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGKN--------- 641 (1025)
Q Consensus 571 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N--------- 641 (1025)
+++.+|..++.+++|++|++++|++++.+|..++.+++|++|++++|+++|.+|..+..+..+..+++..+
T Consensus 502 l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~ 581 (768)
T 3rgz_A 502 LTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKND 581 (768)
T ss_dssp CCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECC
T ss_pred cCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccc
Confidence 88788888888888888888888888888888888888888888888888888877776666555544331
Q ss_pred -------------cCccccChhhhhcCCCCcEEEeecCcCcccCcccccccCcccEEEccccccccccCccccCcccccc
Q 047190 642 -------------GLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPKCFHNFTAMTK 708 (1025)
Q Consensus 642 -------------~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~ 708 (1025)
.+.|..|..+. .++.++.+++..|.+.|.+|..+..+++|+.|||++|+++|.+|..+++++.|
T Consensus 582 ~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L-- 658 (768)
T 3rgz_A 582 GMKKECHGAGNLLEFQGIRSEQLN-RLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYL-- 658 (768)
T ss_dssp SCCTTCCSSEEEEECTTCCGGGGG-GGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTC--
T ss_pred cccccccccccccccccccchhhh-ccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccC--
Confidence 23455666665 57788888999999999999999999999999999999999999999988877
Q ss_pred ccccCcccccccccccccccccceeEeecccCCccceeeccccceeEEEcccCCCCCcChhhHhhcccCCeEeccCcccc
Q 047190 709 EKSSNLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLT 788 (1025)
Q Consensus 709 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~ 788 (1025)
+.||||+|+++|.||..+++++.|++||||+|+++
T Consensus 659 ---------------------------------------------~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~ 693 (768)
T 3rgz_A 659 ---------------------------------------------FILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLD 693 (768)
T ss_dssp ---------------------------------------------CEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCE
T ss_pred ---------------------------------------------CEEeCcCCccCCCCChHHhCCCCCCEEECCCCccc
Confidence 88999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCCccEEeCCCCcCCCcCcccccCCCCCCEEECcCCc-cccc
Q 047190 789 GQITPRIGQLKSLDFLDLSRNHFFGGIPSSLSRLRLLSVMDLSYNN-FSGK 838 (1025)
Q Consensus 789 g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~Ldls~N~-l~g~ 838 (1025)
|.||..++.+++|++||||+|+++|.||.. ..+..+....+.+|+ |.|.
T Consensus 694 g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~~~gN~~Lcg~ 743 (768)
T 3rgz_A 694 GRIPQAMSALTMLTEIDLSNNNLSGPIPEM-GQFETFPPAKFLNNPGLCGY 743 (768)
T ss_dssp ECCCGGGGGCCCCSEEECCSSEEEEECCSS-SSGGGSCGGGGCSCTEEEST
T ss_pred CcCChHHhCCCCCCEEECcCCcccccCCCc-hhhccCCHHHhcCCchhcCC
Confidence 999999999999999999999999999975 344555566677886 4553
No 3
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=2.3e-63 Score=626.26 Aligned_cols=689 Identities=20% Similarity=0.208 Sum_probs=434.4
Q ss_pred EEEccCCCCCCCCCcccccCcccccccccccccCCCCcchhccCCCCCCEEecccCCCCCCCCchhcccCCCCCeeeccC
Q 047190 116 YLDLSWNNFSGSPIPEFIGSLGKLSELALSSAQFAGPIPHQLGNLSKLQVLDLRFNNLFSSGNLDWLSYLSSLRYLDLAD 195 (1025)
Q Consensus 116 ~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~Ls~n~i~~~~~~~~l~~l~~L~~L~L~~ 195 (1025)
..|.++++++. +|. ..++|++|+|++|.+++..|..|+++++|++|+|++|.......+..+.++++|++|+|++
T Consensus 8 ~~dcs~~~L~~--vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~ 82 (844)
T 3j0a_A 8 IAFYRFCNLTQ--VPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGS 82 (844)
T ss_dssp EEEESCCCSSC--CCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTT
T ss_pred EEEccCCCCCC--CCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCC
Confidence 45555666663 454 3456777777777776666666777777777777766432211223334444444444444
Q ss_pred CcCCCCcchHHhhCCCCCCCEEEcCCCCCCCCCCCcccccccCCcccEEEccCCCCCCCCchhhhhcCCCCccEEEcCCC
Q 047190 196 CKLSKFSNWVQVLSNLRSLTNLYLGYCDLPPISTPSLLHINYSKSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGSN 275 (1025)
Q Consensus 196 n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~~~L~~L~Ls~n 275 (1025)
|.++... +..+.++ ++|++|+|++|.++
T Consensus 83 N~l~~~~--p~~~~~l---------------------------~~L~~L~Ls~n~l~----------------------- 110 (844)
T 3j0a_A 83 SKIYFLH--PDAFQGL---------------------------FHLFELRLYFCGLS----------------------- 110 (844)
T ss_dssp CCCCEEC--TTSSCSC---------------------------SSCCCEECTTCCCS-----------------------
T ss_pred CcCcccC--HhHccCC---------------------------cccCEeeCcCCCCC-----------------------
Confidence 4333321 1122222 33333333333333
Q ss_pred CCCCCchhh--hhCCCCCcEEEccCCCCCCc--chhhcCCCCccEEEeecCCCCCcchHHhhhc--CCCCCCCCCCcEEE
Q 047190 276 QLHGSIPLA--FGHMASLRHLDLLSNQLREV--PKFLGNMSSLKRLVFSYNELRGELSEFIQNV--SSGSTKNSSLEWLY 349 (1025)
Q Consensus 276 ~l~~~~p~~--~~~l~~L~~L~Ls~n~l~~l--p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l--~~~~~~~~~L~~L~ 349 (1025)
+.+|.. |+++++|++|+|++|.++++ +..++++++|++|++++|.+.+..+..+..+ + +|+.|+
T Consensus 111 ---~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~-------~L~~L~ 180 (844)
T 3j0a_A 111 ---DAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGK-------TLSFFS 180 (844)
T ss_dssp ---SCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHC-------SSCCCE
T ss_pred ---cccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCC-------ccceEE
Confidence 322222 45555666666666666552 2456666666666666666666666555554 3 666666
Q ss_pred ccccccccccCC-CCCCCC------CcEEEeecccccCccccccccc---CCcceeeccCcccccccchhhhcCCCCCcE
Q 047190 350 LAFNEITGTIPD-LGGFPS------LQILSLENNRLTGTISKSIGQL---SKLELLLLSGNSLRGVISEALFSNLSSLDT 419 (1025)
Q Consensus 350 L~~n~l~~~~p~-l~~l~~------L~~L~L~~n~l~~~~p~~l~~l---~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~ 419 (1025)
++.|.+.+..|. ++.+++ |++|++++|.+++..+..+... ++++.|.++.+.....
T Consensus 181 L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~-------------- 246 (844)
T 3j0a_A 181 LAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAG-------------- 246 (844)
T ss_dssp ECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCS--------------
T ss_pred CCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccccccc--------------
Confidence 666666655543 333333 6777777776666666555432 4555666553332211
Q ss_pred EECCCCccccccccCCCCC--cccceeeccCCCCCCCCchhhhcCCcccEEEccCCCCCCchhhhhhhccccceEEEccC
Q 047190 420 LQLSDNSLTLKFSHDWTPP--FQLFNIFLGSCKIGPRFPKWLQSQNQTVALDVSNAGISDIVPDWFWDLTNQLYYLNLSN 497 (1025)
Q Consensus 420 L~Ls~n~l~~~~~~~~~~~--~~L~~L~L~~~~l~~~~p~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~ 497 (1025)
+..+.+.......+... .+++.|++++|.+....+..+..+++|+.|++++|.+.+..|..|..+. +|++|++++
T Consensus 247 --~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~-~L~~L~Ls~ 323 (844)
T 3j0a_A 247 --FGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLD-NLQVLNLSY 323 (844)
T ss_dssp --SSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCS-SCCEEEEES
T ss_pred --ccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCC-CCCEEECCC
Confidence 01112222222222221 3455555555555555666677777788888888887777777666554 677777777
Q ss_pred ccCCCCCCCccccccCCCCeeecccCcCccCCCCCCCCCceeeccCCcccccccccccccCCcccEEEccCccccccCCC
Q 047190 498 NEMKGKLPDLSRKFDSYGPGIDVSSNQFDGPIPLLPPNVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNLLSGRLPD 577 (1025)
Q Consensus 498 N~l~~~~p~~~~~~l~~~~~l~ls~n~l~g~~p~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~ 577 (1025)
|.+++..|.. ...+++|+.|++++|.+++..+.
T Consensus 324 N~l~~~~~~~-----------------------------------------------~~~l~~L~~L~L~~N~i~~~~~~ 356 (844)
T 3j0a_A 324 NLLGELYSSN-----------------------------------------------FYGLPKVAYIDLQKNHIAIIQDQ 356 (844)
T ss_dssp CCCSCCCSCS-----------------------------------------------CSSCTTCCEEECCSCCCCCCCSS
T ss_pred CCCCccCHHH-----------------------------------------------hcCCCCCCEEECCCCCCCccChh
Confidence 7665332211 01246788999999999888888
Q ss_pred cccCCCCCCEEEcCCCcccccCCcccccccCCCEEEcccCcccccCCccccCCCCccEEeCCCCcCccccChhhhhcCCC
Q 047190 578 CWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGKNGLSGEIPTWIGESLPN 657 (1025)
Q Consensus 578 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~ 657 (1025)
.|..+++|++|++++|.+++. ..+++|+.|++++|+++. +|.. ..+++.|++++|++++.-.......+++
T Consensus 357 ~~~~l~~L~~L~Ls~N~l~~i-----~~~~~L~~L~l~~N~l~~-l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~ 427 (844)
T 3j0a_A 357 TFKFLEKLQTLDLRDNALTTI-----HFIPSIPDIFLSGNKLVT-LPKI---NLTANLIHLSENRLENLDILYFLLRVPH 427 (844)
T ss_dssp CSCSCCCCCEEEEETCCSCCC-----SSCCSCSEEEEESCCCCC-CCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTT
T ss_pred hhcCCCCCCEEECCCCCCCcc-----cCCCCcchhccCCCCccc-cccc---ccccceeecccCccccCchhhhhhcCCc
Confidence 899999999999999998743 237889999999999984 4443 5678999999999985322222336999
Q ss_pred CcEEEeecCcCcccCcc-cccccCcccEEEcccccccccc-----CccccCccccccccccCcccccccccccccccccc
Q 047190 658 LVVLSLRSNKFHGNIPF-QLCYLSHIQILDLSLNNISGII-----PKCFHNFTAMTKEKSSNLSIISNYYYNLGLRGMLM 731 (1025)
Q Consensus 658 L~~L~L~~N~l~~~~p~-~l~~l~~L~~L~Ls~N~l~~~~-----p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 731 (1025)
|++|+|++|++++..+. .+..+++|+.|+|++|.+++.. |..|..++
T Consensus 428 L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~--------------------------- 480 (844)
T 3j0a_A 428 LQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLS--------------------------- 480 (844)
T ss_dssp CCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBC---------------------------
T ss_pred cceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcc---------------------------
Confidence 99999999999876543 4566899999999999998433 33344333
Q ss_pred eeEeecccCCccceeeccccceeEEEcccCCCCCcChhhHhhcccCCeEeccCccccccCCCCCCCCCCccEEeCCCCcC
Q 047190 732 PLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSRNHF 811 (1025)
Q Consensus 732 ~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l 811 (1025)
.|+.|||++|++++.+|..+.++++|+.|+|++|+|++.+|..+. ++|+.|||++|++
T Consensus 481 --------------------~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l 538 (844)
T 3j0a_A 481 --------------------HLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQL 538 (844)
T ss_dssp --------------------CEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECC
T ss_pred --------------------cccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcC
Confidence 448899999999999999999999999999999999998888776 8999999999999
Q ss_pred CCcCcccccCCCCCCEEECcCCcccccCCCCCCCCCcCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCC
Q 047190 812 FGGIPSSLSRLRLLSVMDLSYNNFSGKIPKGTQLQRFGASTYAGNPELCGLPLPNKCLDEESAPSPSRD--DAYYTPDDD 889 (1025)
Q Consensus 812 ~g~ip~~l~~l~~L~~Ldls~N~l~g~ip~~~~~~~~~~~~~~gN~~lcg~~~~~~C~~~~~~~~~~~~--~~~~~~~~~ 889 (1025)
++.+|..+. .|+.|++++|++.|.++.. .|......+|..+||.+....|..+....+.... +...|.+..
T Consensus 539 ~~~~~~~~~---~L~~l~l~~Np~~C~c~~~----~f~~~~~~~~~~~~~~~~~~~C~~p~~~~g~~l~~~~~~~C~~~~ 611 (844)
T 3j0a_A 539 LAPNPDVFV---SLSVLDITHNKFICECELS----TFINWLNHTNVTIAGPPADIYCVYPDSFSGVSLFSLSTEGCDEEE 611 (844)
T ss_dssp CCCCSCCCS---SCCEEEEEEECCCCSSSCC----SHHHHHHHTTTTTCCCGGGCCCSSCSSSCSCCTTTCCCCCC----
T ss_pred CCCChhHhC---CcCEEEecCCCcccccccH----HHHHHHHhcCcccccccccCccCCchhhCCCccccCccccCCchh
Confidence 999998765 6889999999999987642 2221123457778888888889776654443221 112222211
Q ss_pred CCcceeeeeeeeehhhhHHHH-hhhhheeecccccc-chhH-------------------------HHHHhhhheeehhh
Q 047190 890 GDQFITLGFYMSMILGFFVGF-WGVCGTLLVKSSWR-HGYY-------------------------NFLTRVKDWLYVEA 942 (1025)
Q Consensus 890 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~-------------------------~~~~~~~~~~~~~~ 942 (1025)
... ...+.+.+++++++++ ++++++++..+.|+ .||+ .|..++.+||+.++
T Consensus 612 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~yd~fisy~~~d~~~v~~~l 689 (844)
T 3j0a_A 612 VLK--SLKFSLFIVCTVTLTLFLMTILTVTKFRGFCFICYKTAQRLVFKDHPQGTEPDMYKYDAYLCFSSKDFTWVQNAL 689 (844)
T ss_dssp --------CHHHHHHHHHHHHHHHTTTSHHHHC----------------CCCGGGSSSCCCCSEEEECCSTTHHHHHHTH
T ss_pred hcc--ccceehhHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhccccccccccceeccEEEEeeCCcHHHHHHHH
Confidence 110 0111111111111111 11111111111111 1111 22336889999999
Q ss_pred hHHHHHH---HHhhhccccccCc-----------cccccchhhhhhhhhccceeeeccCCCCCcccccccCCcccccc
Q 047190 943 VVNIAKL---QRRIQAAPEVHGW-----------HSLDQSKLLLLVYLRKILLIRTFSNLSPCETVPAEQNSPQATMD 1006 (1025)
Q Consensus 943 ~~~l~~~---~~~~~lc~~~rd~-----------~si~~s~~~~~v~s~~~~r~~t~~e~~~~t~~f~~~~~~~~~~~ 1006 (1025)
+++||+. ++.+++|+|+||| ++|++|||+|||+|++|++ ++|++++-.++.+.......|
T Consensus 690 ~~~Le~~~~~~~~~~~~~~~rd~~~G~~~~~~i~~~i~~sr~~i~vls~~~~~----s~wc~~e~~~a~~~~~~~~~~ 763 (844)
T 3j0a_A 690 LKHLDTQYSDQNRFNLCFEERDFVPGENRIANIQDAIWNSRKIVCLVSRHFLR----DGWCLEAFSYAQGRCLSDLNS 763 (844)
T ss_dssp HHHHHSTTTTTTCSCEECSSSSCCSSSCHHHHHHHHHHHSSEEEEEECTTHHH----HTSTTHHHHHHHSCCCCSSCT
T ss_pred HHHHhhccccCCceEEEEEccccCCCchHHHHHHHHHHHhCeEEEEecccccc----ChHHHHHHHHHHHHHHHhcCC
Confidence 9999994 7889999999999 6999999999999999999 899999888886655544444
No 4
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=7.2e-58 Score=565.42 Aligned_cols=609 Identities=23% Similarity=0.231 Sum_probs=429.1
Q ss_pred EEECCCCCCCCCCcccccccccCcCCCCCcEEEccCCCCCCCCCcccccCcccccccccccccCCCCcchhccCCCCCCE
Q 047190 86 GLDLRASSDSPVDALKGTINPSLLKLQHLTYLDLSWNNFSGSPIPEFIGSLGKLSELALSSAQFAGPIPHQLGNLSKLQV 165 (1025)
Q Consensus 86 ~L~L~~~~~~~~~~l~g~l~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~ 165 (1025)
.+|.++ ..++ .+|..+. +++++|+|++|.+++. .+..|+++++|++|+|++|.+++..|..++++++|++
T Consensus 8 ~~~cs~------~~L~-~ip~~~~--~~l~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 77 (680)
T 1ziw_A 8 VADCSH------LKLT-QVPDDLP--TNITVLNLTHNQLRRL-PAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKV 77 (680)
T ss_dssp EEECCS------SCCS-SCCSCSC--TTCSEEECCSSCCCCC-CGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCE
T ss_pred eeECCC------CCcc-ccccccC--CCCcEEECCCCCCCCc-CHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCE
Confidence 466666 3343 4666554 7899999999999875 6677899999999999999999888889999999999
Q ss_pred EecccCCCCCCCCchhcccCCCCCeeeccCCcCCCCcchHHhhCCCCCCCEEEcCCCCCCCCCCCcccccccCCcccEEE
Q 047190 166 LDLRFNNLFSSGNLDWLSYLSSLRYLDLADCKLSKFSNWVQVLSNLRSLTNLYLGYCDLPPISTPSLLHINYSKSLEVID 245 (1025)
Q Consensus 166 L~Ls~n~i~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~ 245 (1025)
|+|++|.+. ......++++++|++|++++|.+++++. ..++++++|++|++++|.+.+..+.. +.++ ++|++|+
T Consensus 78 L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~~~l~~L~~L~Ls~n~l~~~~~~~--~~~l-~~L~~L~ 151 (680)
T 1ziw_A 78 LNLQHNELS-QLSDKTFAFCTNLTELHLMSNSIQKIKN--NPFVKQKNLITLDLSHNGLSSTKLGT--QVQL-ENLQELL 151 (680)
T ss_dssp EECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCS--CTTTTCTTCCEEECCSSCCSCCCCCS--SSCC-TTCCEEE
T ss_pred EECCCCccC-ccChhhhccCCCCCEEECCCCccCccCh--hHccccCCCCEEECCCCcccccCchh--hccc-ccCCEEE
Confidence 999999863 2333458888888888888888877642 45778888888888888877766542 2333 7777777
Q ss_pred ccCCCCCCCCchhhhhc--CCCCccEEEcCCCCCCCCchhhhhCCCCCcEEEccCCCCCC-cchhh---cCCCCccEEEe
Q 047190 246 LSNNYLTNSIYPWLFNV--SSNLVDHIDLGSNQLHGSIPLAFGHMASLRHLDLLSNQLRE-VPKFL---GNMSSLKRLVF 319 (1025)
Q Consensus 246 Ls~n~l~~~~~~~l~~l--~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~-lp~~l---~~l~~L~~L~L 319 (1025)
+++|.+++..+..+... .. |++|++++|.+++..|..++.+++|+.|++.++.+.. ....+ ...++|+.|++
T Consensus 152 L~~n~l~~~~~~~~~~~~~~~--L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L 229 (680)
T 1ziw_A 152 LSNNKIQALKSEELDIFANSS--LKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSL 229 (680)
T ss_dssp CCSSCCCCBCHHHHGGGTTCE--ESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEEC
T ss_pred ccCCcccccCHHHhhcccccc--ccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEc
Confidence 77777776555554332 44 7777777777776666666667777777776666543 11111 12355556666
Q ss_pred ecCCCCCcchHHhhhcCCCCCCCCCCcEEEccccccccccCC-CCCCCCCcEEEeecccccCcccccccccCCcceeecc
Q 047190 320 SYNELRGELSEFIQNVSSGSTKNSSLEWLYLAFNEITGTIPD-LGGFPSLQILSLENNRLTGTISKSIGQLSKLELLLLS 398 (1025)
Q Consensus 320 s~n~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~l~~~~p~-l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~ 398 (1025)
++|.+.+..|..+..+. .++|++|++++|.+++..|. ++.+++|++|++++|++++..|..+..+++|++|+++
T Consensus 230 ~~n~l~~~~~~~~~~l~-----~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 304 (680)
T 1ziw_A 230 SNSQLSTTSNTTFLGLK-----WTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLK 304 (680)
T ss_dssp TTSCCCEECTTTTGGGG-----GSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECT
T ss_pred cCCcccccChhHhhccC-----cCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEecc
Confidence 66655555555444432 01355555555555544433 4555555555555555554444445555555555554
Q ss_pred CcccccccchhhhcCCCCCcEEECCCCccccccccCCCCCcccceeeccCCCCCCCCchhhhcCCcccEEEccCCCCCCc
Q 047190 399 GNSLRGVISEALFSNLSSLDTLQLSDNSLTLKFSHDWTPPFQLFNIFLGSCKIGPRFPKWLQSQNQTVALDVSNAGISDI 478 (1025)
Q Consensus 399 ~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~~~p~~l~~~~~L~~L~Ls~n~i~~~ 478 (1025)
+|...+.++.. .++ ......+..+++|+.|++++|.+.++
T Consensus 305 ~~~~~~~~~~~---~lp-------------------------------------~i~~~~~~~l~~L~~L~l~~n~l~~~ 344 (680)
T 1ziw_A 305 RSFTKQSISLA---SLP-------------------------------------KIDDFSFQWLKCLEHLNMEDNDIPGI 344 (680)
T ss_dssp TCBCCC---------CC-------------------------------------EECTTTTTTCTTCCEEECCSCCBCCC
T ss_pred chhhhcccccc---ccc-------------------------------------ccChhhcccCCCCCEEECCCCccCCC
Confidence 44333211100 000 00011344556666666666666666
Q ss_pred hhhhhhhccccceEEEccCccCCCCCCCccccccCCCCeeecccCcCccCCCCCCCCCceeeccCCcccccccccccccC
Q 047190 479 VPDWFWDLTNQLYYLNLSNNEMKGKLPDLSRKFDSYGPGIDVSSNQFDGPIPLLPPNVSSLNLSKNKFSGSISFLCSISS 558 (1025)
Q Consensus 479 ~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~l~~~~~l~ls~n~l~g~~p~~~~~L~~L~l~~n~l~~~~~~~~~~~~ 558 (1025)
.+..|..+. +|++|++++|.+.+.. +....+. ....
T Consensus 345 ~~~~~~~l~-~L~~L~Ls~n~~~~~~---------------l~~~~f~----------------------------~~~~ 380 (680)
T 1ziw_A 345 KSNMFTGLI-NLKYLSLSNSFTSLRT---------------LTNETFV----------------------------SLAH 380 (680)
T ss_dssp CTTTTTTCT-TCCEEECTTCBSCCCE---------------ECTTTTG----------------------------GGTT
T ss_pred ChhHhcccc-CCcEEECCCCchhhhh---------------cchhhhc----------------------------cccc
Confidence 555555443 5666666666543210 0000000 0012
Q ss_pred CcccEEEccCccccccCCCcccCCCCCCEEEcCCCcccccCC-cccccccCCCEEEcccCcccccCCccccCCCCccEEe
Q 047190 559 HLLTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIP-DSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMD 637 (1025)
Q Consensus 559 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ 637 (1025)
+.|+.|++++|++++..|..|..+++|++|++++|.+++.+| ..+..+++|++|++++|++++..+..|..+++|+.|+
T Consensus 381 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~ 460 (680)
T 1ziw_A 381 SPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLM 460 (680)
T ss_dssp SCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEE
T ss_pred CcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccch
Confidence 568999999999998889999999999999999999987666 6788999999999999999998899999999999999
Q ss_pred CCCCcCc--cccChhhhhcCCCCcEEEeecCcCcccCcccccccCcccEEEccccccccccCccccCccccccccccCcc
Q 047190 638 LGKNGLS--GEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPKCFHNFTAMTKEKSSNLS 715 (1025)
Q Consensus 638 Ls~N~l~--g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~ 715 (1025)
+++|.++ +.+|..+. .+++|++|+|++|++++..+..+..+++|++|+|++|++++..+..+..-
T Consensus 461 l~~n~l~~~~~~p~~~~-~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~------------ 527 (680)
T 1ziw_A 461 LRRVALKNVDSSPSPFQ-PLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGG------------ 527 (680)
T ss_dssp CTTSCCBCTTCSSCTTT-TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTS------------
T ss_pred hccccccccccCCcccc-cCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCC------------
Confidence 9999987 56788877 79999999999999998888889999999999999999986543322110
Q ss_pred cccccccccccccccceeEeecccCCccceeeccccceeEEEcccCCCCCcChhhHhhcccCCeEeccCccccccCCCCC
Q 047190 716 IISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPRI 795 (1025)
Q Consensus 716 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~ 795 (1025)
...+...++.|+.|||++|+++...+..|.++++|+.|+|++|++++..+..|
T Consensus 528 ---------------------------~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~ 580 (680)
T 1ziw_A 528 ---------------------------PIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVF 580 (680)
T ss_dssp ---------------------------CCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred ---------------------------cchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHh
Confidence 00011224455899999999997666679999999999999999998888889
Q ss_pred CCCCCccEEeCCCCcCCCcCccccc-CCCCCCEEECcCCcccccCCC
Q 047190 796 GQLKSLDFLDLSRNHFFGGIPSSLS-RLRLLSVMDLSYNNFSGKIPK 841 (1025)
Q Consensus 796 ~~l~~L~~LdLs~N~l~g~ip~~l~-~l~~L~~Ldls~N~l~g~ip~ 841 (1025)
..+++|+.|||++|++++.+|..+. .+++|+.|++++|++.|.++.
T Consensus 581 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~ 627 (680)
T 1ziw_A 581 NNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES 627 (680)
T ss_dssp TTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred CCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCcc
Confidence 9999999999999999999998887 789999999999999998775
No 5
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=5.3e-55 Score=539.82 Aligned_cols=572 Identities=25% Similarity=0.298 Sum_probs=386.5
Q ss_pred CcEEEEECCCCCCCCCCcccccccccCcCCCCCcEEEccCCCCCCCCCcccccCcccccccccccccCCCCcchhccCCC
Q 047190 82 GHVLGLDLRASSDSPVDALKGTINPSLLKLQHLTYLDLSWNNFSGSPIPEFIGSLGKLSELALSSAQFAGPIPHQLGNLS 161 (1025)
Q Consensus 82 ~~v~~L~L~~~~~~~~~~l~g~l~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~L~ 161 (1025)
.+++.|+|++ +.+.+..+..|.++++|++|+|++|.+++. .|..++++++|++|+|++|.+++..+..|++++
T Consensus 25 ~~l~~L~Ls~------n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~ 97 (680)
T 1ziw_A 25 TNITVLNLTH------NQLRRLPAANFTRYSQLTSLDVGFNTISKL-EPELCQKLPMLKVLNLQHNELSQLSDKTFAFCT 97 (680)
T ss_dssp TTCSEEECCS------SCCCCCCGGGGGGGTTCSEEECCSSCCCCC-CTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred CCCcEEECCC------CCCCCcCHHHHhCCCcCcEEECCCCccCcc-CHHHHhcccCcCEEECCCCccCccChhhhccCC
Confidence 5799999998 677776677899999999999999999986 789999999999999999999976666899999
Q ss_pred CCCEEecccCCCCCCCCchhcccCCCCCeeeccCCcCCCCcchHHhhCCCCCCCEEEcCCCCCCCCCCCcccccccCCcc
Q 047190 162 KLQVLDLRFNNLFSSGNLDWLSYLSSLRYLDLADCKLSKFSNWVQVLSNLRSLTNLYLGYCDLPPISTPSLLHINYSKSL 241 (1025)
Q Consensus 162 ~L~~L~Ls~n~i~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L 241 (1025)
+|++|++++|.+ ....+..++++++|++|++++|.+++.+ +..+.++++|++|++++|.+++..+..+..... ++|
T Consensus 98 ~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~-~~L 173 (680)
T 1ziw_A 98 NLTELHLMSNSI-QKIKNNPFVKQKNLITLDLSHNGLSSTK--LGTQVQLENLQELLLSNNKIQALKSEELDIFAN-SSL 173 (680)
T ss_dssp TCSEEECCSSCC-CCCCSCTTTTCTTCCEEECCSSCCSCCC--CCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTT-CEE
T ss_pred CCCEEECCCCcc-CccChhHccccCCCCEEECCCCcccccC--chhhcccccCCEEEccCCcccccCHHHhhcccc-ccc
Confidence 999999999987 3344567899999999999999998753 356789999999999999999887654444444 899
Q ss_pred cEEEccCCCCCCCCchhhhhcCCCCccEEEcCCCCCCCCchhhhh---CCCCCcEEEccCCCCCC-cchhhcCCCC--cc
Q 047190 242 EVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLHGSIPLAFG---HMASLRHLDLLSNQLRE-VPKFLGNMSS--LK 315 (1025)
Q Consensus 242 ~~L~Ls~n~l~~~~~~~l~~l~~~~L~~L~Ls~n~l~~~~p~~~~---~l~~L~~L~Ls~n~l~~-lp~~l~~l~~--L~ 315 (1025)
++|++++|.+++..|..+..+.. |+.|+++++.+.+.....+. ..++|+.|++++|.+++ .|..+.+++. |+
T Consensus 174 ~~L~L~~n~l~~~~~~~~~~l~~--L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~ 251 (680)
T 1ziw_A 174 KKLELSSNQIKEFSPGCFHAIGR--LFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLT 251 (680)
T ss_dssp SEEECTTCCCCCBCTTGGGGSSE--ECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCC
T ss_pred cEEECCCCcccccChhhhhhhhh--hhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCC
Confidence 99999999999988888988888 99999999988644333221 35899999999999998 6778887755 99
Q ss_pred EEEeecCCCCCcchHHhhhcCCCCCCCCCCcEEEccccccccccCC-CCCCCCCcEEEeecccccCc-----ccc----c
Q 047190 316 RLVFSYNELRGELSEFIQNVSSGSTKNSSLEWLYLAFNEITGTIPD-LGGFPSLQILSLENNRLTGT-----ISK----S 385 (1025)
Q Consensus 316 ~L~Ls~n~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~l~~~~p~-l~~l~~L~~L~L~~n~l~~~-----~p~----~ 385 (1025)
+|++++|.+.+..+..+..++ +|++|++++|.+++..|. +..+++|++|++++|...+. +|. .
T Consensus 252 ~L~Ls~n~l~~~~~~~~~~l~-------~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~ 324 (680)
T 1ziw_A 252 MLDLSYNNLNVVGNDSFAWLP-------QLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFS 324 (680)
T ss_dssp EEECTTSCCCEECTTTTTTCT-------TCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTT
T ss_pred EEECCCCCcCccCcccccCcc-------cccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhh
Confidence 999999999988888888777 999999999999988875 99999999999998765542 222 4
Q ss_pred ccccCCcceeeccCcccccccchhhhcCCCCCcEEECCCCccccccccCCCCCcccceeeccCCCCCCCCchhhhc--CC
Q 047190 386 IGQLSKLELLLLSGNSLRGVISEALFSNLSSLDTLQLSDNSLTLKFSHDWTPPFQLFNIFLGSCKIGPRFPKWLQS--QN 463 (1025)
Q Consensus 386 l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~~~p~~l~~--~~ 463 (1025)
+..+++|++|++++|.+.+..+. .|.++++|++|++++|.+...... ...+.. .+
T Consensus 325 ~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~Ls~n~~~~~~l~----------------------~~~f~~~~~~ 381 (680)
T 1ziw_A 325 FQWLKCLEHLNMEDNDIPGIKSN-MFTGLINLKYLSLSNSFTSLRTLT----------------------NETFVSLAHS 381 (680)
T ss_dssp TTTCTTCCEEECCSCCBCCCCTT-TTTTCTTCCEEECTTCBSCCCEEC----------------------TTTTGGGTTS
T ss_pred cccCCCCCEEECCCCccCCCChh-HhccccCCcEEECCCCchhhhhcc----------------------hhhhcccccC
Confidence 55666677777777766654333 366666666666666654311000 000111 12
Q ss_pred cccEEEccCCCCCCchhhhhhhccccceEEEccCccCCCCCCCccccccCCCCeeecccCcCccCCCCCCCCCceeeccC
Q 047190 464 QTVALDVSNAGISDIVPDWFWDLTNQLYYLNLSNNEMKGKLPDLSRKFDSYGPGIDVSSNQFDGPIPLLPPNVSSLNLSK 543 (1025)
Q Consensus 464 ~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~l~~~~~l~ls~n~l~g~~p~~~~~L~~L~l~~ 543 (1025)
.|+.|++++|.+.++.|..|..+
T Consensus 382 ~L~~L~L~~n~l~~~~~~~~~~l--------------------------------------------------------- 404 (680)
T 1ziw_A 382 PLHILNLTKNKISKIESDAFSWL--------------------------------------------------------- 404 (680)
T ss_dssp CCCEEECTTSCCCEECTTTTTTC---------------------------------------------------------
T ss_pred cCceEECCCCCCCeEChhhhhCC---------------------------------------------------------
Confidence 33444444444433333332222
Q ss_pred CcccccccccccccCCcccEEEccCccccccCC-CcccCCCCCCEEEcCCCcccccCCcccccccCCCEEEcccCccc--
Q 047190 544 NKFSGSISFLCSISSHLLTYLDLSNNLLSGRLP-DCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLS-- 620 (1025)
Q Consensus 544 n~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~-- 620 (1025)
++|+.|++++|.+++.+| ..|.++++|++|++++|++.+..+..+..+++|++|++++|.+.
T Consensus 405 ---------------~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~ 469 (680)
T 1ziw_A 405 ---------------GHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNV 469 (680)
T ss_dssp ---------------TTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCT
T ss_pred ---------------CCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhcccccccc
Confidence 334444444444443332 33444444444444444444444444444444444444444443
Q ss_pred ccCCccccCCCCccEEeCCCCcCccccChhhhhcCCCCcEEEeecCcCcccC--------cccccccCcccEEEcccccc
Q 047190 621 GGLPSFFMNGSQLTLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNI--------PFQLCYLSHIQILDLSLNNI 692 (1025)
Q Consensus 621 ~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~--------p~~l~~l~~L~~L~Ls~N~l 692 (1025)
+..|..|.++++|++|++++|++++ +|...+..+++|++|+|++|++++.. +..+.++++|++|+|++|++
T Consensus 470 ~~~p~~~~~l~~L~~L~Ls~N~l~~-i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l 548 (680)
T 1ziw_A 470 DSSPSPFQPLRNLTILDLSNNNIAN-INDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGF 548 (680)
T ss_dssp TCSSCTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCC
T ss_pred ccCCcccccCCCCCEEECCCCCCCc-CChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCC
Confidence 2344444445555555555555542 22222224455555555555544321 12255666666666666666
Q ss_pred ccccCccccCccccccccccCcccccccccccccccccceeEeecccCCccceeeccccceeEEEcccCCCCCcChhhHh
Q 047190 693 SGIIPKCFHNFTAMTKEKSSNLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIM 772 (1025)
Q Consensus 693 ~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~~~ip~~~~ 772 (1025)
+...+..|+.+++| +.|||++|++++..+..|.
T Consensus 549 ~~i~~~~~~~l~~L-----------------------------------------------~~L~Ls~N~l~~l~~~~~~ 581 (680)
T 1ziw_A 549 DEIPVEVFKDLFEL-----------------------------------------------KIIDLGLNNLNTLPASVFN 581 (680)
T ss_dssp CCCCTTTTTTCTTC-----------------------------------------------CEEECCSSCCCCCCTTTTT
T ss_pred CCCCHHHcccccCc-----------------------------------------------ceeECCCCCCCcCCHhHhC
Confidence 63333345554444 5666666666665556666
Q ss_pred hcccCCeEeccCccccccCCCCCC-CCCCccEEeCCCCcCCCcCc
Q 047190 773 DLVGLVALNLSNNNLTGQITPRIG-QLKSLDFLDLSRNHFFGGIP 816 (1025)
Q Consensus 773 ~l~~L~~L~Ls~N~l~g~ip~~~~-~l~~L~~LdLs~N~l~g~ip 816 (1025)
++++|+.|+|++|++++.+|..++ .+++|+.|+|++|.+.+.-+
T Consensus 582 ~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~ 626 (680)
T 1ziw_A 582 NQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCE 626 (680)
T ss_dssp TCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCC
T ss_pred CCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCc
Confidence 667777777777777766666565 56677777777777765543
No 6
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=2.3e-52 Score=509.17 Aligned_cols=532 Identities=20% Similarity=0.186 Sum_probs=365.0
Q ss_pred cccccCcCCCCCcEEEccCCCCCCCCCcccccCcccccccccccccCCCCcchhccCCCCCCEEecccCCCCCCCCchhc
Q 047190 103 TINPSLLKLQHLTYLDLSWNNFSGSPIPEFIGSLGKLSELALSSAQFAGPIPHQLGNLSKLQVLDLRFNNLFSSGNLDWL 182 (1025)
Q Consensus 103 ~l~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~Ls~n~i~~~~~~~~l 182 (1025)
.+|..+.. ++++|+|++|.+++. .|..|+++++|++|+|++|++++..|..|+++++|++|+|++|.+. ...+..+
T Consensus 26 ~iP~~l~~--~l~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~ 101 (606)
T 3t6q_A 26 EIPGTLPN--STECLEFSFNVLPTI-QNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLI-FMAETAL 101 (606)
T ss_dssp SCCTTSCT--TCCEEECTTCCCSEE-CTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCS-EECTTTT
T ss_pred cCcCCCCC--cCcEEEccCCccCcC-ChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCccc-ccChhhh
Confidence 45555543 789999999999975 6888999999999999999999888999999999999999999863 3345567
Q ss_pred ccCCCCCeeeccCCcCCCCcchHHhhCCCCCCCEEEcCCCCCCCCCCCcccccccCCcccEEEccCCCCCCCCchhhhhc
Q 047190 183 SYLSSLRYLDLADCKLSKFSNWVQVLSNLRSLTNLYLGYCDLPPISTPSLLHINYSKSLEVIDLSNNYLTNSIYPWLFNV 262 (1025)
Q Consensus 183 ~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l 262 (1025)
+++++|++|++++|.++.++. ..++++++|++|++++|.+.+.... .+..+
T Consensus 102 ~~l~~L~~L~L~~n~i~~l~~--~~~~~l~~L~~L~L~~n~l~~~~~~---------------------------~~~~l 152 (606)
T 3t6q_A 102 SGPKALKHLFFIQTGISSIDF--IPLHNQKTLESLYLGSNHISSIKLP---------------------------KGFPT 152 (606)
T ss_dssp SSCTTCCEEECTTSCCSCGGG--SCCTTCTTCCEEECCSSCCCCCCCC---------------------------TTCCC
T ss_pred cccccccEeeccccCcccCCc--chhccCCcccEEECCCCcccccCcc---------------------------cccCC
Confidence 888888888888888777522 3356666666666666666554322 12223
Q ss_pred CCCCccEEEcCCCCCCCCchhhhhCCCCCc--EEEccCCCCCCcchhhcCCCCccEEEeecCCCCCcchHHhhhcCCCCC
Q 047190 263 SSNLVDHIDLGSNQLHGSIPLAFGHMASLR--HLDLLSNQLREVPKFLGNMSSLKRLVFSYNELRGELSEFIQNVSSGST 340 (1025)
Q Consensus 263 ~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~--~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~ 340 (1025)
++ |++|++++|.+++..+..++.+++|+ .|++++|.++++++......+|+.|++++|. .++..+..+.
T Consensus 153 ~~--L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~---~~~~~~~~l~---- 223 (606)
T 3t6q_A 153 EK--LKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQ---NLLVIFKGLK---- 223 (606)
T ss_dssp TT--CCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCS---CHHHHHHHTT----
T ss_pred cc--cCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCch---hHHHHhhhcc----
Confidence 33 55555555555555566666666666 6777777777644444444667777777765 3445555544
Q ss_pred CCCCCcEEEccccccccccCCCCCCCCCcEEEeecccccCcccccccccCCcceeeccCcccccccchhhhcCCCCCcEE
Q 047190 341 KNSSLEWLYLAFNEITGTIPDLGGFPSLQILSLENNRLTGTISKSIGQLSKLELLLLSGNSLRGVISEALFSNLSSLDTL 420 (1025)
Q Consensus 341 ~~~~L~~L~L~~n~l~~~~p~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L 420 (1025)
+++...+....+. .+....+... ....+.. .+|+.|++++|.+.+..+ ..|..+++|++|
T Consensus 224 ---~~~l~~l~~~~~~----------~~~~~~i~~~-----~~~~l~~-~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L 283 (606)
T 3t6q_A 224 ---NSTIQSLWLGTFE----------DMDDEDISPA-----VFEGLCE-MSVESINLQKHYFFNISS-NTFHCFSGLQEL 283 (606)
T ss_dssp ---TCEEEEEECCCCT----------TSCCCCCCGG-----GGGGGGG-SEEEEEECTTCCCSSCCT-TTTTTCTTCSEE
T ss_pred ---ccchhheechhhc----------cccccccChh-----Hhchhhc-CceeEEEeecCccCccCH-HHhccccCCCEE
Confidence 3433333222111 1111111111 1111111 156666666666664333 346666666666
Q ss_pred ECCCCccccccccCCCCCcccceeeccCCCCCCCCchhhhcCCcccEEEccCCCCCCchhhhhhhccccceEEEccCccC
Q 047190 421 QLSDNSLTLKFSHDWTPPFQLFNIFLGSCKIGPRFPKWLQSQNQTVALDVSNAGISDIVPDWFWDLTNQLYYLNLSNNEM 500 (1025)
Q Consensus 421 ~Ls~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~~~p~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~N~l 500 (1025)
++++|.++ .+|..+..+++|+.|++++|.+.+..|..+..+
T Consensus 284 ~l~~n~l~-------------------------~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l-------------- 324 (606)
T 3t6q_A 284 DLTATHLS-------------------------ELPSGLVGLSTLKKLVLSANKFENLCQISASNF-------------- 324 (606)
T ss_dssp ECTTSCCS-------------------------CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGC--------------
T ss_pred eccCCccC-------------------------CCChhhcccccCCEEECccCCcCcCchhhhhcc--------------
Confidence 66666554 234445555566666666665555544443322
Q ss_pred CCCCCCccccccCCCCeeecccCcCccCCCCCCCCCceeeccCCcccccccccccccCCcccEEEccCccccccCCC-cc
Q 047190 501 KGKLPDLSRKFDSYGPGIDVSSNQFDGPIPLLPPNVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNLLSGRLPD-CW 579 (1025)
Q Consensus 501 ~~~~p~~~~~~l~~~~~l~ls~n~l~g~~p~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~-~~ 579 (1025)
++|++|++++|.+.+.+|. .+
T Consensus 325 ----------------------------------------------------------~~L~~L~l~~n~~~~~~~~~~~ 346 (606)
T 3t6q_A 325 ----------------------------------------------------------PSLTHLSIKGNTKRLELGTGCL 346 (606)
T ss_dssp ----------------------------------------------------------TTCSEEECCSCSSCCBCCSSTT
T ss_pred ----------------------------------------------------------CcCCEEECCCCCcccccchhhh
Confidence 3455555555555544433 36
Q ss_pred cCCCCCCEEEcCCCcccccC--CcccccccCCCEEEcccCcccccCCccccCCCCccEEeCCCCcCccccChhhhhcCCC
Q 047190 580 FQFDSLAILNLANNSFFGEI--PDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGKNGLSGEIPTWIGESLPN 657 (1025)
Q Consensus 580 ~~l~~L~~L~Ls~N~l~~~~--p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~ 657 (1025)
..+++|++|++++|.+++.. +..+..+++|++|++++|++.+..|..|..+++|+.|++++|++++..|...+..+++
T Consensus 347 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~ 426 (606)
T 3t6q_A 347 ENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHL 426 (606)
T ss_dssp TTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTT
T ss_pred hccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCccc
Confidence 66677777777777776554 5667777777777777777777777777777888888888888776666553346788
Q ss_pred CcEEEeecCcCcccCcccccccCcccEEEcccccccccc---CccccCccccccccccCcccccccccccccccccceeE
Q 047190 658 LVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGII---PKCFHNFTAMTKEKSSNLSIISNYYYNLGLRGMLMPLI 734 (1025)
Q Consensus 658 L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~---p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 734 (1025)
|++|++++|.+.+..|..+..+++|++|++++|++++.. +..++.+++|
T Consensus 427 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L---------------------------- 478 (606)
T 3t6q_A 427 LKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRL---------------------------- 478 (606)
T ss_dssp CCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTC----------------------------
T ss_pred CCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCc----------------------------
Confidence 888888888888777888888888888888888887632 2334444444
Q ss_pred eecccCCccceeeccccceeEEEcccCCCCCcChhhHhhcccCCeEeccCccccccCCCCCCCCCCccEEeCCCCcCCCc
Q 047190 735 FFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSRNHFFGG 814 (1025)
Q Consensus 735 ~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ 814 (1025)
+.|+|++|++++.+|..++++++|+.|+|++|++++.+|..++.++.| .|||++|++++.
T Consensus 479 -------------------~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~ 538 (606)
T 3t6q_A 479 -------------------EILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISII 538 (606)
T ss_dssp -------------------CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCC
T ss_pred -------------------cEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCccccc
Confidence 888999999998889999999999999999999999999999999999 999999999999
Q ss_pred CcccccCCCCCCEEECcCCcccccCCC
Q 047190 815 IPSSLSRLRLLSVMDLSYNNFSGKIPK 841 (1025)
Q Consensus 815 ip~~l~~l~~L~~Ldls~N~l~g~ip~ 841 (1025)
+|..+..+++|+.|++++|++.|.++.
T Consensus 539 ~~~~~~~l~~L~~L~l~~N~~~c~c~~ 565 (606)
T 3t6q_A 539 LPSLLPILSQQRTINLRQNPLDCTCSN 565 (606)
T ss_dssp CGGGHHHHHTSSEEECTTCCEECSGGG
T ss_pred CHhhcccCCCCCEEeCCCCCccccCCc
Confidence 999999999999999999999998763
No 7
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=7e-53 Score=513.20 Aligned_cols=290 Identities=17% Similarity=0.261 Sum_probs=181.6
Q ss_pred CCHHHHHHHHHHHhcCCCCC--------CCCCCCCCCCCCCCCCcc---cceEecCCCCcEEEEECCCCCCCCCCccccc
Q 047190 35 CLDEEKESLLAFKQGLIDES--------GILSSWGREDEKRNCCKW---RGVRCSNKTGHVLGLDLRASSDSPVDALKGT 103 (1025)
Q Consensus 35 ~~~~~~~~ll~~k~~~~~~~--------~~l~~W~~~~~~~~~c~w---~gv~C~~~~~~v~~L~L~~~~~~~~~~l~g~ 103 (1025)
....|++||.++++++.++. ...++|+ .+.+||.| .||+|+.. |||++|+|++ .++.|.
T Consensus 27 ~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~---~~~~~c~w~~~~GV~C~~~-~~V~~L~L~~------~~l~g~ 96 (636)
T 4eco_A 27 EYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWN---FNKELDMWGAQPGVSLNSN-GRVTGLSLEG------FGASGR 96 (636)
T ss_dssp HHHHHHHHHHHHHHHTTGGGCCCCC------CCCC---CSSCGGGTTCCTTEEECTT-CCEEEEECTT------SCCEEE
T ss_pred hHHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCC---CCCCcccccCCCCeEEcCC-CCEEEEEecC------cccCCc
Confidence 44679999999999986442 2345797 47899999 99999754 8999999999 789999
Q ss_pred ccccCcCCCCCcEEEccCCCCC------C-----CCCcccccCcccccccccccccCCCCcchhccCC-CCCCEEecccC
Q 047190 104 INPSLLKLQHLTYLDLSWNNFS------G-----SPIPEFIGSLGKLSELALSSAQFAGPIPHQLGNL-SKLQVLDLRFN 171 (1025)
Q Consensus 104 l~~~l~~l~~L~~L~Ls~n~l~------~-----~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~L-~~L~~L~Ls~n 171 (1025)
+|++++++++|++|+|++|.+. + ..+|... +..|+ +++++|.+.+.+|..+..+ .++..+++...
T Consensus 97 lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~ 173 (636)
T 4eco_A 97 VPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPREDFSDLIKDCINSDPQQK 173 (636)
T ss_dssp ECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGGSCHHHHHHHHHCTTSC
T ss_pred CChHHhcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchhhHHHHHHHHhhcCcccc
Confidence 9999999999999999999761 1 0244444 66778 8888888888777665421 11222222111
Q ss_pred CCCCCCCchhcccCCCCCeeeccCCcCCCCcchHHhhCCCCCCCEEEcCCCCCCCCCCCcccccccCCcccEEE--ccCC
Q 047190 172 NLFSSGNLDWLSYLSSLRYLDLADCKLSKFSNWVQVLSNLRSLTNLYLGYCDLPPISTPSLLHINYSKSLEVID--LSNN 249 (1025)
Q Consensus 172 ~i~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~--Ls~n 249 (1025)
.+ ... .. ..++.+. ...|
T Consensus 174 ~~-------------------------~~~--------~~---------------------------~~l~~l~l~~~~n 193 (636)
T 4eco_A 174 SI-------------------------KKS--------SR---------------------------ITLKDTQIGQLSN 193 (636)
T ss_dssp CC-------------------------CCC--------CC---------------------------CCCCTTTTTCCSC
T ss_pred cc-------------------------ccc--------cc---------------------------cchhhhhhccccC
Confidence 10 000 00 0011111 1134
Q ss_pred CCCCCCchhhhhcCCCCccEEEcCCCCCCCC-----------------chhhhh--CCCCCcEEEccCCCCCC-cchhhc
Q 047190 250 YLTNSIYPWLFNVSSNLVDHIDLGSNQLHGS-----------------IPLAFG--HMASLRHLDLLSNQLRE-VPKFLG 309 (1025)
Q Consensus 250 ~l~~~~~~~l~~l~~~~L~~L~Ls~n~l~~~-----------------~p~~~~--~l~~L~~L~Ls~n~l~~-lp~~l~ 309 (1025)
.+++ +|..++++++ |++|+|++|.+++. +|..++ ++++|++|++++|.+.+ +|..++
T Consensus 194 ~l~~-ip~~l~~l~~--L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~ 270 (636)
T 4eco_A 194 NITF-VSKAVMRLTK--LRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLK 270 (636)
T ss_dssp EEEE-ECGGGGGCTT--CCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTT
T ss_pred CCcc-CCHHHhcccC--CCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHh
Confidence 5555 5666666666 66666666666664 676766 77777777777777666 777777
Q ss_pred CCCCccEEEeecCC-CCC-cchHHhhhcCCCCCCCCCCcEEEccccccccccCC---CCCCCCCcEEEeecccccCcccc
Q 047190 310 NMSSLKRLVFSYNE-LRG-ELSEFIQNVSSGSTKNSSLEWLYLAFNEITGTIPD---LGGFPSLQILSLENNRLTGTISK 384 (1025)
Q Consensus 310 ~l~~L~~L~Ls~n~-l~~-~~~~~~~~l~~~~~~~~~L~~L~L~~n~l~~~~p~---l~~l~~L~~L~L~~n~l~~~~p~ 384 (1025)
++++|++|++++|. +++ .+|..+..+. ....+++|++|++++|.++ .+|. ++.+++|++|++++|+++|.+|
T Consensus 271 ~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~-~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip- 347 (636)
T 4eco_A 271 ALPEMQLINVACNRGISGEQLKDDWQALA-DAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP- 347 (636)
T ss_dssp TCSSCCEEECTTCTTSCHHHHHHHHHHHH-HSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-
T ss_pred cCCCCCEEECcCCCCCccccchHHHHhhh-ccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-
Confidence 77777777777776 776 6776666541 0000115666666666655 3333 5555555555555555555555
Q ss_pred cccccCCcceeeccCcccc
Q 047190 385 SIGQLSKLELLLLSGNSLR 403 (1025)
Q Consensus 385 ~l~~l~~L~~L~L~~N~l~ 403 (1025)
.++.+++|++|++++|.+.
T Consensus 348 ~~~~l~~L~~L~L~~N~l~ 366 (636)
T 4eco_A 348 AFGSEIKLASLNLAYNQIT 366 (636)
T ss_dssp CCEEEEEESEEECCSSEEE
T ss_pred hhCCCCCCCEEECCCCccc
Confidence 4555555555555555544
No 8
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=6e-51 Score=496.68 Aligned_cols=528 Identities=20% Similarity=0.192 Sum_probs=343.4
Q ss_pred cccccCcCCCCCcEEEccCCCCCCCCCcccccCcccccccccccccCCCCcchhccCCCCCCEEecccCCCCCCCCchhc
Q 047190 103 TINPSLLKLQHLTYLDLSWNNFSGSPIPEFIGSLGKLSELALSSAQFAGPIPHQLGNLSKLQVLDLRFNNLFSSGNLDWL 182 (1025)
Q Consensus 103 ~l~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~Ls~n~i~~~~~~~~l 182 (1025)
.+|..+. ++|++|+|++|.+++. .+..|.++++|++|+|++|.+++..|..|+++++|++|+|++|.+ ....+..+
T Consensus 25 ~ip~~~~--~~l~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l-~~~~p~~~ 100 (606)
T 3vq2_A 25 KVPDDIP--SSTKNIDLSFNPLKIL-KSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPI-QSFSPGSF 100 (606)
T ss_dssp SCCTTSC--TTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC-CCCCTTSS
T ss_pred cCCCCCC--CCcCEEECCCCCcCEe-ChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcc-cccChhhc
Confidence 3454443 6788888888888764 556778888888888888888876677788888888888888775 22334556
Q ss_pred ccCCCCCeeeccCCcCCCCcchHHhhCCCCCCCEEEcCCCCCCCCCCCcccccccCCcccEEEccCCCCCC-CCchhhhh
Q 047190 183 SYLSSLRYLDLADCKLSKFSNWVQVLSNLRSLTNLYLGYCDLPPISTPSLLHINYSKSLEVIDLSNNYLTN-SIYPWLFN 261 (1025)
Q Consensus 183 ~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~-~~~~~l~~ 261 (1025)
+++++|++|++++|.++..+. ..++++ ++|++|++++|.+.+ .+|..+.+
T Consensus 101 ~~l~~L~~L~L~~n~l~~~~~--~~~~~l---------------------------~~L~~L~L~~n~l~~~~lp~~~~~ 151 (606)
T 3vq2_A 101 SGLTSLENLVAVETKLASLES--FPIGQL---------------------------ITLKKLNVAHNFIHSCKLPAYFSN 151 (606)
T ss_dssp TTCTTCCEEECTTSCCCCSSS--SCCTTC---------------------------TTCCEEECCSSCCCCCCCCGGGGT
T ss_pred CCcccCCEEEccCCccccccc--cccCCC---------------------------CCCCEEeCCCCcccceechHhHhh
Confidence 666666666666666655432 123444 555555555555543 34566666
Q ss_pred cCCCCccEEEcCCCCCCCCchhhhhCCCCC----cEEEccCCCCCCcchhhcCCCCccEEEeecCCCC-CcchHHhhhcC
Q 047190 262 VSSNLVDHIDLGSNQLHGSIPLAFGHMASL----RHLDLLSNQLREVPKFLGNMSSLKRLVFSYNELR-GELSEFIQNVS 336 (1025)
Q Consensus 262 l~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L----~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~ 336 (1025)
+++ |++|++++|.+++..+..++.+++| ++|++++|.++++|.......+|++|++++|.+. +..|..+..++
T Consensus 152 l~~--L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~ 229 (606)
T 3vq2_A 152 LTN--LVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLA 229 (606)
T ss_dssp CTT--CCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTT
T ss_pred cCC--CCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhcccc
Confidence 666 6667777666666656656555444 3778888877776655545557888888888776 34566666666
Q ss_pred CCCCCCCCCcEEEccccccccccCCCCCCCCCcEEEeecccccCcccccccccCCcceeec-cCcccccccchhhhcCCC
Q 047190 337 SGSTKNSSLEWLYLAFNEITGTIPDLGGFPSLQILSLENNRLTGTISKSIGQLSKLELLLL-SGNSLRGVISEALFSNLS 415 (1025)
Q Consensus 337 ~~~~~~~~L~~L~L~~n~l~~~~p~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L-~~N~l~~~~~~~~~~~l~ 415 (1025)
+|+.+++..+.+.+.. .+.. +....+..+..+ .++.+++ ..|.+.+.++. +..++
T Consensus 230 -------~L~~l~l~~~~~~~~~-------~l~~-------~~~~~~~~l~~l-~l~~l~l~~~~~~~~~~~~--~~~l~ 285 (606)
T 3vq2_A 230 -------GLHVHRLILGEFKDER-------NLEI-------FEPSIMEGLCDV-TIDEFRLTYTNDFSDDIVK--FHCLA 285 (606)
T ss_dssp -------TCEEEEEEEECCTTSC-------CCSC-------CCGGGGTTGGGS-EEEEEEECCCTTCCGGGGS--CGGGT
T ss_pred -------ccccccccccccccCC-------cccc-------cChHHhhhhhhc-cHhheeccccccccccccc--cccCC
Confidence 7777776654433210 0000 011111122222 3444444 44444444443 44555
Q ss_pred CCcEEECCCCccccccccCCCCCcccceeeccCCCCCCCCchhhhcCCcccEEEccCCCCCCchhhhhhhccccceEEEc
Q 047190 416 SLDTLQLSDNSLTLKFSHDWTPPFQLFNIFLGSCKIGPRFPKWLQSQNQTVALDVSNAGISDIVPDWFWDLTNQLYYLNL 495 (1025)
Q Consensus 416 ~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~~~p~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L 495 (1025)
+|+.|++++|.+.. +| ++..+++ |++|++
T Consensus 286 ~L~~L~l~~~~~~~-------------------------l~-~l~~~~~-------------------------L~~L~l 314 (606)
T 3vq2_A 286 NVSAMSLAGVSIKY-------------------------LE-DVPKHFK-------------------------WQSLSI 314 (606)
T ss_dssp TCSEEEEESCCCCC-------------------------CC-CCCTTCC-------------------------CSEEEE
T ss_pred CCCEEEecCccchh-------------------------hh-hcccccc-------------------------CCEEEc
Confidence 55555555544431 11 1222222 333333
Q ss_pred cCccCCCCCCCccccccCCCCeeecccCcCccCCCCCCCCCceeeccCCcccccccccccccCCcccEEEccCccccccC
Q 047190 496 SNNEMKGKLPDLSRKFDSYGPGIDVSSNQFDGPIPLLPPNVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNLLSGRL 575 (1025)
Q Consensus 496 s~N~l~~~~p~~~~~~l~~~~~l~ls~n~l~g~~p~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~ 575 (1025)
++|.+ +.+|.+ .+++|+.|++++|...+.+
T Consensus 315 ~~n~l-~~lp~~-------------------------------------------------~l~~L~~L~l~~n~~~~~~ 344 (606)
T 3vq2_A 315 IRCQL-KQFPTL-------------------------------------------------DLPFLKSLTLTMNKGSISF 344 (606)
T ss_dssp ESCCC-SSCCCC-------------------------------------------------CCSSCCEEEEESCSSCEEC
T ss_pred ccccC-cccccC-------------------------------------------------CCCccceeeccCCcCccch
Confidence 33322 111100 1234555555555433332
Q ss_pred CCcccCCCCCCEEEcCCCccccc--CCcccccccCCCEEEcccCcccccCCccccCCCCccEEeCCCCcCccccChhhhh
Q 047190 576 PDCWFQFDSLAILNLANNSFFGE--IPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGKNGLSGEIPTWIGE 653 (1025)
Q Consensus 576 p~~~~~l~~L~~L~Ls~N~l~~~--~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~ 653 (1025)
.+..+++|++|++++|.+++. +|..+..+++|++|++++|.+++ +|..+..+++|+.|++++|++.+..|...+.
T Consensus 345 --~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 421 (606)
T 3vq2_A 345 --KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFL 421 (606)
T ss_dssp --CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTT
T ss_pred --hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhh
Confidence 344566666667766666654 35666667777777777777664 4466777778888888888877666633333
Q ss_pred cCCCCcEEEeecCcCcccCcccccccCcccEEEcccccccc-ccCccccCccccccccccCcccccccccccccccccce
Q 047190 654 SLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISG-IIPKCFHNFTAMTKEKSSNLSIISNYYYNLGLRGMLMP 732 (1025)
Q Consensus 654 ~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 732 (1025)
.+++|++|++++|++.+..|..+..+++|++|++++|++++ .+|..++.+++|
T Consensus 422 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L-------------------------- 475 (606)
T 3vq2_A 422 SLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNL-------------------------- 475 (606)
T ss_dssp TCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTC--------------------------
T ss_pred ccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCC--------------------------
Confidence 67888888888888888888888888888888888888887 467777776666
Q ss_pred eEeecccCCccceeeccccceeEEEcccCCCCCcChhhHhhcccCCeEeccCccccccCCCCCCCCCCccEEeCCCCcCC
Q 047190 733 LIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSRNHFF 812 (1025)
Q Consensus 733 ~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~ 812 (1025)
+.|||++|++++.+|..++++++|++|+|++|++++.+|..++.+++|++|||++|+++
T Consensus 476 ---------------------~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 534 (606)
T 3vq2_A 476 ---------------------TFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE 534 (606)
T ss_dssp ---------------------CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC
T ss_pred ---------------------CEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc
Confidence 78889999998888888999999999999999999999999999999999999999999
Q ss_pred CcCcccccCCC-CCCEEECcCCcccccCCC
Q 047190 813 GGIPSSLSRLR-LLSVMDLSYNNFSGKIPK 841 (1025)
Q Consensus 813 g~ip~~l~~l~-~L~~Ldls~N~l~g~ip~ 841 (1025)
.+|..+..++ +|++|++++|++.|.+|.
T Consensus 535 -~~p~~~~~l~~~L~~l~l~~N~~~c~c~~ 563 (606)
T 3vq2_A 535 -TSKGILQHFPKSLAFFNLTNNSVACICEH 563 (606)
T ss_dssp -CEESCGGGSCTTCCEEECCSCCCCCSSTT
T ss_pred -ccCHhHhhhcccCcEEEccCCCcccCCcc
Confidence 5777798886 699999999999998775
No 9
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=5.1e-51 Score=497.32 Aligned_cols=514 Identities=21% Similarity=0.201 Sum_probs=365.1
Q ss_pred CcccEEEccCCCCCCCCchhhhhcCCCCccEEEcCCCCCCCCchhhhhCCCCCcEEEccCCCCCC-cchhhcCCCCccEE
Q 047190 239 KSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLHGSIPLAFGHMASLRHLDLLSNQLRE-VPKFLGNMSSLKRL 317 (1025)
Q Consensus 239 ~~L~~L~Ls~n~l~~~~~~~l~~l~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~-lp~~l~~l~~L~~L 317 (1025)
+.+++|++++|.+++..|..+..+++ |++|++++|.+.+..|.+|+++++|++|++++|.+++ .|..++++++|++|
T Consensus 33 ~~l~~L~Ls~n~i~~~~~~~~~~l~~--L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 110 (606)
T 3t6q_A 33 NSTECLEFSFNVLPTIQNTTFSRLIN--LTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHL 110 (606)
T ss_dssp TTCCEEECTTCCCSEECTTTSTTCTT--CSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEE
T ss_pred CcCcEEEccCCccCcCChhHhccCcc--ceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEe
Confidence 45666666666666555556666666 6666666666666666666666666666666666666 35566666666666
Q ss_pred EeecCCCCCcchHHhhhcCCCCCCCCCCcEEEccccccccc-cCCCCCCCCCcEEEeecccccCcccccccccCCcc--e
Q 047190 318 VFSYNELRGELSEFIQNVSSGSTKNSSLEWLYLAFNEITGT-IPDLGGFPSLQILSLENNRLTGTISKSIGQLSKLE--L 394 (1025)
Q Consensus 318 ~Ls~n~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~l~~~-~p~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~--~ 394 (1025)
++++|.+++..+..+..++ +|++|++++|.+++. .|.+..+++|++|++++|++++..+..++.+++|+ .
T Consensus 111 ~L~~n~i~~l~~~~~~~l~-------~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~ 183 (606)
T 3t6q_A 111 FFIQTGISSIDFIPLHNQK-------TLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLS 183 (606)
T ss_dssp ECTTSCCSCGGGSCCTTCT-------TCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEE
T ss_pred eccccCcccCCcchhccCC-------cccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeE
Confidence 6666666655444444444 666666666666542 24444466666666666666655555566666666 5
Q ss_pred eeccCcccccccchhhhcCCCCCcEEECCCCccccccccCCCCCcccceeeccCCCCCCCCchhhhcCCcccEEEccCC-
Q 047190 395 LLLSGNSLRGVISEALFSNLSSLDTLQLSDNSLTLKFSHDWTPPFQLFNIFLGSCKIGPRFPKWLQSQNQTVALDVSNA- 473 (1025)
Q Consensus 395 L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~~~p~~l~~~~~L~~L~Ls~n- 473 (1025)
|++++|.+.+..+.. + ...+|++|++++|. ..+..+..+..+....+.-.
T Consensus 184 L~l~~n~l~~~~~~~-~-~~~~L~~L~l~~~~---------------------------~~~~~~~~l~~~~l~~l~~~~ 234 (606)
T 3t6q_A 184 LNLNGNDIAGIEPGA-F-DSAVFQSLNFGGTQ---------------------------NLLVIFKGLKNSTIQSLWLGT 234 (606)
T ss_dssp EECTTCCCCEECTTT-T-TTCEEEEEECTTCS---------------------------CHHHHHHHTTTCEEEEEECCC
T ss_pred EecCCCccCccChhH-h-hhccccccccCCch---------------------------hHHHHhhhccccchhheechh
Confidence 666666666544432 2 23455566655553 12223333332222221111
Q ss_pred ----CCCCchhhhhhhccc-cceEEEccCccCCCCCCCccccccCCCCeeecccCcCccCCCCCCCCCceeeccCCcccc
Q 047190 474 ----GISDIVPDWFWDLTN-QLYYLNLSNNEMKGKLPDLSRKFDSYGPGIDVSSNQFDGPIPLLPPNVSSLNLSKNKFSG 548 (1025)
Q Consensus 474 ----~i~~~~~~~~~~~~~-~L~~L~Ls~N~l~~~~p~~~~~~l~~~~~l~ls~n~l~g~~p~~~~~L~~L~l~~n~l~~ 548 (1025)
....+.+..+.+... +|+.|++++|.+++..+... ..+++|++|++++|+++.
T Consensus 235 ~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~----------------------~~l~~L~~L~l~~n~l~~ 292 (606)
T 3t6q_A 235 FEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTF----------------------HCFSGLQELDLTATHLSE 292 (606)
T ss_dssp CTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTT----------------------TTCTTCSEEECTTSCCSC
T ss_pred hccccccccChhHhchhhcCceeEEEeecCccCccCHHHh----------------------ccccCCCEEeccCCccCC
Confidence 111122222222211 46666666666653322110 113456666666666653
Q ss_pred cccccccccCCcccEEEccCccccccCCCcccCCCCCCEEEcCCCcccccCCcc-cccccCCCEEEcccCcccccC--Cc
Q 047190 549 SISFLCSISSHLLTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDS-MSFLRSIGSLSLYNNSLSGGL--PS 625 (1025)
Q Consensus 549 ~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~-~~~l~~L~~L~L~~N~l~~~~--p~ 625 (1025)
..... ..+++|++|++++|.+++..|..+..+++|++|++++|.+.+.+|.. +..+++|++|++++|.+++.. +.
T Consensus 293 lp~~l--~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 370 (606)
T 3t6q_A 293 LPSGL--VGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNL 370 (606)
T ss_dssp CCSSC--CSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTT
T ss_pred CChhh--cccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcch
Confidence 32222 23578999999999999888899999999999999999998777654 889999999999999999876 77
Q ss_pred cccCCCCccEEeCCCCcCccccChhhhhcCCCCcEEEeecCcCcccCccc-ccccCcccEEEccccccccccCccccCcc
Q 047190 626 FFMNGSQLTLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQ-LCYLSHIQILDLSLNNISGIIPKCFHNFT 704 (1025)
Q Consensus 626 ~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~-l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 704 (1025)
.+..+++|++|++++|++++..|..+. .+++|++|++++|++.+..|.. +..+++|+.|++++|.+++..|..++.++
T Consensus 371 ~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 449 (606)
T 3t6q_A 371 QLRNLSHLQSLNLSYNEPLSLKTEAFK-ECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLP 449 (606)
T ss_dssp TTTTCTTCCEEECCSCSCEEECTTTTT-TCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCT
T ss_pred hcccCCCCCEEECCCCcCCcCCHHHhc-CCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCC
Confidence 899999999999999999977777776 7999999999999999887654 89999999999999999999898888777
Q ss_pred ccccccccCcccccccccccccccccceeEeecccCCccceeeccccceeEEEcccCCCCCc---ChhhHhhcccCCeEe
Q 047190 705 AMTKEKSSNLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGK---VLEEIMDLVGLVALN 781 (1025)
Q Consensus 705 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~~~---ip~~~~~l~~L~~L~ 781 (1025)
+| +.|++++|++++. .+..+..+++|++|+
T Consensus 450 ~L-----------------------------------------------~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~ 482 (606)
T 3t6q_A 450 AL-----------------------------------------------QHLNLQGNHFPKGNIQKTNSLQTLGRLEILV 482 (606)
T ss_dssp TC-----------------------------------------------CEEECTTCBCGGGEECSSCGGGGCTTCCEEE
T ss_pred CC-----------------------------------------------CEEECCCCCCCccccccchhhccCCCccEEE
Confidence 76 8899999999873 346799999999999
Q ss_pred ccCccccccCCCCCCCCCCccEEeCCCCcCCCcCcccccCCCCCCEEECcCCcccccCCCC-CCCCCcCCCCcCCCCCCC
Q 047190 782 LSNNNLTGQITPRIGQLKSLDFLDLSRNHFFGGIPSSLSRLRLLSVMDLSYNNFSGKIPKG-TQLQRFGASTYAGNPELC 860 (1025)
Q Consensus 782 Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~Ldls~N~l~g~ip~~-~~~~~~~~~~~~gN~~lc 860 (1025)
|++|++++.+|..|+.+++|+.|||++|++++.+|..+.+++.| +||+++|++++.+|.. ..+..+....+.|||+.|
T Consensus 483 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 561 (606)
T 3t6q_A 483 LSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDC 561 (606)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEEC
T ss_pred CCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccc
Confidence 99999999999999999999999999999999999999999999 9999999999887764 334445556689999999
Q ss_pred CCC
Q 047190 861 GLP 863 (1025)
Q Consensus 861 g~~ 863 (1025)
.|+
T Consensus 562 ~c~ 564 (606)
T 3t6q_A 562 TCS 564 (606)
T ss_dssp SGG
T ss_pred cCC
Confidence 764
No 10
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.9e-50 Score=508.71 Aligned_cols=518 Identities=22% Similarity=0.233 Sum_probs=369.1
Q ss_pred CcccEEEccCCCCCCCCchhhhhcCCCCccEEEcCCCCCCCCc-hhhhhCCCCCcEEEccCCCCCC-cchhhcCCCCccE
Q 047190 239 KSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLHGSI-PLAFGHMASLRHLDLLSNQLRE-VPKFLGNMSSLKR 316 (1025)
Q Consensus 239 ~~L~~L~Ls~n~l~~~~~~~l~~l~~~~L~~L~Ls~n~l~~~~-p~~~~~l~~L~~L~Ls~n~l~~-lp~~l~~l~~L~~ 316 (1025)
++|++|+|++|.+++..+..+..+.. |++|+|++|...+.+ |.+|+++++|++|+|++|.+++ .|..|+++++|++
T Consensus 24 ~~l~~LdLs~N~i~~i~~~~~~~l~~--L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 101 (844)
T 3j0a_A 24 NTTERLLLSFNYIRTVTASSFPFLEQ--LQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFE 101 (844)
T ss_dssp TTCCEEEEESCCCCEECSSSCSSCCS--CSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCC
T ss_pred CCcCEEECCCCcCCccChhHCccccc--CeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCE
Confidence 56666666666666655666666666 677777666554444 5666777777777777777766 4666777777777
Q ss_pred EEeecCCCCCcchHH--hhhcCCCCCCCCCCcEEEccccccccccCC--CCCCCCCcEEEeecccccCccccccccc--C
Q 047190 317 LVFSYNELRGELSEF--IQNVSSGSTKNSSLEWLYLAFNEITGTIPD--LGGFPSLQILSLENNRLTGTISKSIGQL--S 390 (1025)
Q Consensus 317 L~Ls~n~l~~~~~~~--~~~l~~~~~~~~~L~~L~L~~n~l~~~~p~--l~~l~~L~~L~L~~n~l~~~~p~~l~~l--~ 390 (1025)
|+|++|.+.+.++.. +..++ +|++|+|++|.+++..+. ++++++|++|++++|.+++..+..+..+ +
T Consensus 102 L~Ls~n~l~~~~~~~~~~~~L~-------~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~ 174 (844)
T 3j0a_A 102 LRLYFCGLSDAVLKDGYFRNLK-------ALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGK 174 (844)
T ss_dssp EECTTCCCSSCCSTTCCCSSCS-------SCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHC
T ss_pred eeCcCCCCCcccccCccccccC-------CCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCC
Confidence 777777766654432 44444 677777777776655442 6667777777777777766666666665 6
Q ss_pred CcceeeccCcccccccchhhhcCCCC------CcEEECCCCccccccccCCCC---CcccceeeccCCCCCCCCchhhhc
Q 047190 391 KLELLLLSGNSLRGVISEALFSNLSS------LDTLQLSDNSLTLKFSHDWTP---PFQLFNIFLGSCKIGPRFPKWLQS 461 (1025)
Q Consensus 391 ~L~~L~L~~N~l~~~~~~~~~~~l~~------L~~L~Ls~n~l~~~~~~~~~~---~~~L~~L~L~~~~l~~~~p~~l~~ 461 (1025)
+|+.|++++|.+.+..+.. +..+++ |++|++++|.+.+..+..+.. ..+++.+.+..+....
T Consensus 175 ~L~~L~L~~n~l~~~~~~~-~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~-------- 245 (844)
T 3j0a_A 175 TLSFFSLAANSLYSRVSVD-WGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGA-------- 245 (844)
T ss_dssp SSCCCEECCSBSCCCCCCC-CCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBC--------
T ss_pred ccceEECCCCccccccccc-hhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccc--------
Confidence 6777777777766655442 333333 666666666555443333221 1234444443222111
Q ss_pred CCcccEEEccCCCCCCchhhhhhhc-cccceEEEccCccCCCCCCCccccccCCCCeeecccCcCccCCCCCCCCCceee
Q 047190 462 QNQTVALDVSNAGISDIVPDWFWDL-TNQLYYLNLSNNEMKGKLPDLSRKFDSYGPGIDVSSNQFDGPIPLLPPNVSSLN 540 (1025)
Q Consensus 462 ~~~L~~L~Ls~n~i~~~~~~~~~~~-~~~L~~L~Ls~N~l~~~~p~~~~~~l~~~~~l~ls~n~l~g~~p~~~~~L~~L~ 540 (1025)
+...+.+.+..+..|.+. .++|+.|++++|.+.+..|... ..+++|+.|+
T Consensus 246 -------~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~----------------------~~l~~L~~L~ 296 (844)
T 3j0a_A 246 -------GFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVF----------------------ETLKDLKVLN 296 (844)
T ss_dssp -------SSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCS----------------------SSCCCCCEEE
T ss_pred -------cccccccCCCChhhhhccccCCccEEECCCCcccccChhhh----------------------hcCCCCCEEE
Confidence 012333444444444443 2367777777777764332211 1245677777
Q ss_pred ccCCcccccccccccccCCcccEEEccCccccccCCCcccCCCCCCEEEcCCCcccccCCcccccccCCCEEEcccCccc
Q 047190 541 LSKNKFSGSISFLCSISSHLLTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLS 620 (1025)
Q Consensus 541 l~~n~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~ 620 (1025)
+++|++.+..+... ..+++|++|++++|.+++..|..|..+++|++|++++|.+.+..+..|..+++|++|++++|.++
T Consensus 297 L~~n~i~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~ 375 (844)
T 3j0a_A 297 LAYNKINKIADEAF-YGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT 375 (844)
T ss_dssp EESCCCCEECTTTT-TTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSC
T ss_pred CCCCcCCCCChHHh-cCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCC
Confidence 77777766554322 24678999999999999888999999999999999999999888888999999999999999998
Q ss_pred ccCCccccCCCCccEEeCCCCcCccccChhhhhcCCCCcEEEeecCcCcccC-cccccccCcccEEEccccccccccCcc
Q 047190 621 GGLPSFFMNGSQLTLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNI-PFQLCYLSHIQILDLSLNNISGIIPKC 699 (1025)
Q Consensus 621 ~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~-p~~l~~l~~L~~L~Ls~N~l~~~~p~~ 699 (1025)
+. ..+++|+.|++++|+++ .+|.. ..+++.|++++|++++.. +..+..+++|+.|+|++|++++..+..
T Consensus 376 ~i-----~~~~~L~~L~l~~N~l~-~l~~~----~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 445 (844)
T 3j0a_A 376 TI-----HFIPSIPDIFLSGNKLV-TLPKI----NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQ 445 (844)
T ss_dssp CC-----SSCCSCSEEEEESCCCC-CCCCC----CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSS
T ss_pred cc-----cCCCCcchhccCCCCcc-ccccc----ccccceeecccCccccCchhhhhhcCCccceeeCCCCccccccccc
Confidence 53 23789999999999998 77754 567999999999998753 234668999999999999999664432
Q ss_pred -ccCccccccccccCcccccccccccccccccceeEeecccCCccceeeccccceeEEEcccCCCC-----CcChhhHhh
Q 047190 700 -FHNFTAMTKEKSSNLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLG-----GKVLEEIMD 773 (1025)
Q Consensus 700 -~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~-----~~ip~~~~~ 773 (1025)
+..+ +.|+.|+|++|.++ +..|..|.+
T Consensus 446 ~~~~~-----------------------------------------------~~L~~L~Ls~N~l~~~~~~~~~~~~~~~ 478 (844)
T 3j0a_A 446 TPSEN-----------------------------------------------PSLEQLFLGENMLQLAWETELCWDVFEG 478 (844)
T ss_dssp SSCSC-----------------------------------------------TTCCBCEEESCCCSSSCCSCCCSSCSSC
T ss_pred ccccC-----------------------------------------------CccccccCCCCccccccccccchhhhcC
Confidence 2222 33488999999997 555677899
Q ss_pred cccCCeEeccCccccccCCCCCCCCCCccEEeCCCCcCCCcCcccccCCCCCCEEECcCCcccccCCCCCCCCCcCCCCc
Q 047190 774 LVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSRNHFFGGIPSSLSRLRLLSVMDLSYNNFSGKIPKGTQLQRFGASTY 853 (1025)
Q Consensus 774 l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~Ldls~N~l~g~ip~~~~~~~~~~~~~ 853 (1025)
+++|++|+|++|+|++.+|..|+.+++|+.|||++|+|++..|..+. ++|+.||+++|+++|.+|.. +..+....+
T Consensus 479 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~--~~~L~~l~l 554 (844)
T 3j0a_A 479 LSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDV--FVSLSVLDI 554 (844)
T ss_dssp BCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCC--CSSCCEEEE
T ss_pred cccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhH--hCCcCEEEe
Confidence 99999999999999999999999999999999999999998888777 89999999999999999964 445666668
Q ss_pred CCCCCCCCCCCC
Q 047190 854 AGNPELCGLPLP 865 (1025)
Q Consensus 854 ~gN~~lcg~~~~ 865 (1025)
.|||+.|+|+..
T Consensus 555 ~~Np~~C~c~~~ 566 (844)
T 3j0a_A 555 THNKFICECELS 566 (844)
T ss_dssp EEECCCCSSSCC
T ss_pred cCCCcccccccH
Confidence 999999998753
No 11
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=4.2e-50 Score=489.22 Aligned_cols=526 Identities=18% Similarity=0.166 Sum_probs=383.3
Q ss_pred cEEEccCCCCCCCCchhhhhcCCCCccEEEcCCCCCCCCchhhhhCCCCCcEEEccCCCCCCc-chhhcCCCCccEEEee
Q 047190 242 EVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLHGSIPLAFGHMASLRHLDLLSNQLREV-PKFLGNMSSLKRLVFS 320 (1025)
Q Consensus 242 ~~L~Ls~n~l~~~~~~~l~~l~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~Ls 320 (1025)
++++.+++.++. +|..+. .. +++|++++|.+++..+..|+++++|++|++++|.++++ |..|.++++|++|+++
T Consensus 14 ~~~~c~~~~l~~-ip~~~~--~~--l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls 88 (606)
T 3vq2_A 14 ITYQCMDQKLSK-VPDDIP--SS--TKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILT 88 (606)
T ss_dssp TEEECTTSCCSS-CCTTSC--TT--CCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CceEccCCCccc-CCCCCC--CC--cCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECC
Confidence 345555555542 444332 23 66666666666666666666777777777777777663 4566677777777777
Q ss_pred cCCCCCcchHHhhhcCCCCCCCCCCcEEEccccccccccCC-CCCCCCCcEEEeecccccC-cccccccccCCcceeecc
Q 047190 321 YNELRGELSEFIQNVSSGSTKNSSLEWLYLAFNEITGTIPD-LGGFPSLQILSLENNRLTG-TISKSIGQLSKLELLLLS 398 (1025)
Q Consensus 321 ~n~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~l~~~~p~-l~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~L~ 398 (1025)
+|.+++..|..+..++ +|++|++++|.+++..+. ++.+++|++|++++|.+++ .+|..++++++|++|+++
T Consensus 89 ~n~l~~~~p~~~~~l~-------~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls 161 (606)
T 3vq2_A 89 GNPIQSFSPGSFSGLT-------SLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLS 161 (606)
T ss_dssp TCCCCCCCTTSSTTCT-------TCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECC
T ss_pred CCcccccChhhcCCcc-------cCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEcc
Confidence 7777666666666655 677777777777655433 6777777777777777765 456777777777777777
Q ss_pred CcccccccchhhhcCCCCC----cEEECCCCccccccccCCCCCcccceeeccCCCCC-CCCchhhhcCCcccEEEccCC
Q 047190 399 GNSLRGVISEALFSNLSSL----DTLQLSDNSLTLKFSHDWTPPFQLFNIFLGSCKIG-PRFPKWLQSQNQTVALDVSNA 473 (1025)
Q Consensus 399 ~N~l~~~~~~~~~~~l~~L----~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~~~l~-~~~p~~l~~~~~L~~L~Ls~n 473 (1025)
+|.+++..+. .++.+++| .+|++++|.++...+..+... +|+.|++++|.+. ...|.++.+++.++.+++..+
T Consensus 162 ~n~l~~~~~~-~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~ 239 (606)
T 3vq2_A 162 YNYIQTITVN-DLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILG 239 (606)
T ss_dssp SSCCCEECTT-TTHHHHHCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEE
T ss_pred CCcceecChh-hhhhhhccccccceeeccCCCcceeCcccccCc-eeeeeeccCCccchhHHHHHhcccccccccccccc
Confidence 7777654443 24444433 367777777765554444433 5666666666654 345666677777766666433
Q ss_pred CCCC------chhhhhhhccc-cceEEEc-cCccCCCCCCCccccccCCCCeeecccCcCccCCCC--CCCCCceeeccC
Q 047190 474 GISD------IVPDWFWDLTN-QLYYLNL-SNNEMKGKLPDLSRKFDSYGPGIDVSSNQFDGPIPL--LPPNVSSLNLSK 543 (1025)
Q Consensus 474 ~i~~------~~~~~~~~~~~-~L~~L~L-s~N~l~~~~p~~~~~~l~~~~~l~ls~n~l~g~~p~--~~~~L~~L~l~~ 543 (1025)
.+.+ ..+..+.+... .++.+++ ..|.+. +.+|. .+++|+.|++++
T Consensus 240 ~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~-------------------------~~~~~~~~l~~L~~L~l~~ 294 (606)
T 3vq2_A 240 EFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFS-------------------------DDIVKFHCLANVSAMSLAG 294 (606)
T ss_dssp CCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCC-------------------------GGGGSCGGGTTCSEEEEES
T ss_pred ccccCCcccccChHHhhhhhhccHhheecccccccc-------------------------ccccccccCCCCCEEEecC
Confidence 3221 11111211110 2344444 333333 33332 246788888888
Q ss_pred CcccccccccccccCCcccEEEccCccccccCCCcccCCCCCCEEEcCCCcccccCCcccccccCCCEEEcccCccccc-
Q 047190 544 NKFSGSISFLCSISSHLLTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGG- 622 (1025)
Q Consensus 544 n~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~- 622 (1025)
|.+.... ....+++|+.|++++|.+ +.+| .+ .+++|++|++++|...+.. .+..+++|++|++++|++++.
T Consensus 295 ~~~~~l~---~l~~~~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~ 366 (606)
T 3vq2_A 295 VSIKYLE---DVPKHFKWQSLSIIRCQL-KQFP-TL-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSG 366 (606)
T ss_dssp CCCCCCC---CCCTTCCCSEEEEESCCC-SSCC-CC-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEE
T ss_pred ccchhhh---hccccccCCEEEcccccC-cccc-cC-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCc
Confidence 8876543 222467899999999999 5788 45 8999999999999766554 567899999999999999876
Q ss_pred -CCccccCCCCccEEeCCCCcCccccChhhhhcCCCCcEEEeecCcCcccCc-ccccccCcccEEEccccccccccCccc
Q 047190 623 -LPSFFMNGSQLTLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIP-FQLCYLSHIQILDLSLNNISGIIPKCF 700 (1025)
Q Consensus 623 -~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~~ 700 (1025)
.|..+..+++|++|++++|.++ .+|..+. .+++|++|++++|++.+..| ..+..+++|++|++++|++++..|..+
T Consensus 367 ~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 444 (606)
T 3vq2_A 367 CCSYSDLGTNSLRHLDLSFNGAI-IMSANFM-GLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIF 444 (606)
T ss_dssp ECCHHHHCCSCCCEEECCSCSEE-EECCCCT-TCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTT
T ss_pred chhhhhccCCcccEeECCCCccc-cchhhcc-CCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhh
Confidence 4888999999999999999998 5776666 69999999999999998888 689999999999999999999999888
Q ss_pred cCccccccccccCcccccccccccccccccceeEeecccCCccceeeccccceeEEEcccCCCCC-cChhhHhhcccCCe
Q 047190 701 HNFTAMTKEKSSNLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGG-KVLEEIMDLVGLVA 779 (1025)
Q Consensus 701 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~~-~ip~~~~~l~~L~~ 779 (1025)
+.+++| +.|++++|++++ .+|..++.+++|++
T Consensus 445 ~~l~~L-----------------------------------------------~~L~l~~n~l~~~~~~~~~~~l~~L~~ 477 (606)
T 3vq2_A 445 LGLTSL-----------------------------------------------NTLKMAGNSFKDNTLSNVFANTTNLTF 477 (606)
T ss_dssp TTCTTC-----------------------------------------------CEEECTTCEEGGGEECSCCTTCTTCCE
T ss_pred cCCCCC-----------------------------------------------CEEECCCCcCCCcchHHhhccCCCCCE
Confidence 887776 889999999998 47899999999999
Q ss_pred EeccCccccccCCCCCCCCCCccEEeCCCCcCCCcCcccccCCCCCCEEECcCCcccccCCCC-CCCC-CcCCCCcCCCC
Q 047190 780 LNLSNNNLTGQITPRIGQLKSLDFLDLSRNHFFGGIPSSLSRLRLLSVMDLSYNNFSGKIPKG-TQLQ-RFGASTYAGNP 857 (1025)
Q Consensus 780 L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~Ldls~N~l~g~ip~~-~~~~-~~~~~~~~gN~ 857 (1025)
|+|++|++++.+|..++.+++|++|+|++|++++.+|..+..+++|+.||+++|+++ .+|.. ..+. .+....+.|||
T Consensus 478 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~ 556 (606)
T 3vq2_A 478 LDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNS 556 (606)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCC
T ss_pred EECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCC
Confidence 999999999999999999999999999999999999999999999999999999999 56764 2222 24445689999
Q ss_pred CCCCCCC
Q 047190 858 ELCGLPL 864 (1025)
Q Consensus 858 ~lcg~~~ 864 (1025)
+.|+|+.
T Consensus 557 ~~c~c~~ 563 (606)
T 3vq2_A 557 VACICEH 563 (606)
T ss_dssp CCCSSTT
T ss_pred cccCCcc
Confidence 9998865
No 12
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=2e-48 Score=480.43 Aligned_cols=517 Identities=19% Similarity=0.208 Sum_probs=268.7
Q ss_pred CCCCHHHHHHHHHHHhcCCCCCCCCCCCCCCC--CCCCC--Ccc------------cceEecCCCCcEEEEECCCCCCCC
Q 047190 33 ISCLDEEKESLLAFKQGLIDESGILSSWGRED--EKRNC--CKW------------RGVRCSNKTGHVLGLDLRASSDSP 96 (1025)
Q Consensus 33 ~~~~~~~~~~ll~~k~~~~~~~~~l~~W~~~~--~~~~~--c~w------------~gv~C~~~~~~v~~L~L~~~~~~~ 96 (1025)
..+..+|++||++||+++.+| +|+.++ ...+| |.| .||+|+. .+||++|+|++
T Consensus 264 ~~~~~~d~~ALl~~k~~l~~~-----~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls~----- 332 (876)
T 4ecn_A 264 TAEYIKDYKALKAIWEALDGK-----NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLSLAG----- 332 (876)
T ss_dssp CCHHHHHHHHHHHHHHHTTGG-----GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEEECTT-----
T ss_pred cccchHHHHHHHHHHHHcCCC-----CCCcCCCcccccCCccccccccccccccCcCceEecC-CCCEEEEECcc-----
Confidence 356678999999999999876 797421 01244 999 9999985 68999999999
Q ss_pred CCcccccccccCcCCCCCcEEEc-cCCCCCCCCCcccccCc---------cccccccc-------ccccCCCCc------
Q 047190 97 VDALKGTINPSLLKLQHLTYLDL-SWNNFSGSPIPEFIGSL---------GKLSELAL-------SSAQFAGPI------ 153 (1025)
Q Consensus 97 ~~~l~g~l~~~l~~l~~L~~L~L-s~n~l~~~~~p~~l~~l---------~~L~~L~L-------s~n~l~~~~------ 153 (1025)
.++.|.+|++|++|++|++|+| ++|.++|. .|-..... ..++.... ....+.+.+
T Consensus 333 -~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~-~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~ 410 (876)
T 4ecn_A 333 -FGAKGRVPDAIGQLTELKVLSFGTHSETVSG-RLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINR 410 (876)
T ss_dssp -TCCEEEECGGGGGCTTCCEEESCCTTHHHHT-TCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHT
T ss_pred -CCCCCcCchHHhccccceEeeeccccccccc-ccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhh
Confidence 7899999999999999999999 88877654 22110000 00000000 000000000
Q ss_pred -----chhccCCCCCCEEeccc--CCCCCCCCchhcccCCCCCeeeccCCcCCCC-------c--------chHHhhC--
Q 047190 154 -----PHQLGNLSKLQVLDLRF--NNLFSSGNLDWLSYLSSLRYLDLADCKLSKF-------S--------NWVQVLS-- 209 (1025)
Q Consensus 154 -----p~~l~~L~~L~~L~Ls~--n~i~~~~~~~~l~~l~~L~~L~L~~n~l~~~-------~--------~~~~~l~-- 209 (1025)
+........++.+.+.. |.+.. .+..++++++|++|+|++|.+++. + .++..++
T Consensus 411 ~~~~~~i~~~~~l~l~~l~l~~~~N~L~~--IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~ 488 (876)
T 4ecn_A 411 NPEMKPIKKDSRISLKDTQIGNLTNRITF--ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWS 488 (876)
T ss_dssp CTTSCCCCCCCCCCCCTTTTTCCSCEEEE--ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGG
T ss_pred CccccccccccccchhhceeccccCcccc--hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhc
Confidence 00001111222222222 33211 334455555555555555555540 0 0222333
Q ss_pred CCCCCCEEEcCCCCCCCCCCCcccccccCCcccEEEccCCC-CCC-CCchhhhhcCCCCccEEEcCCCCCCCCchhhhhC
Q 047190 210 NLRSLTNLYLGYCDLPPISTPSLLHINYSKSLEVIDLSNNY-LTN-SIYPWLFNVSSNLVDHIDLGSNQLHGSIPLAFGH 287 (1025)
Q Consensus 210 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~-l~~-~~~~~l~~l~~~~L~~L~Ls~n~l~~~~p~~~~~ 287 (1025)
++++|++|+|++|.+.+..|. .+.++ ++|++|++++|+ +++ .+|..+..+. ..+..
T Consensus 489 ~L~~L~~L~Ls~N~l~~~iP~--~l~~L-~~L~~L~Ls~N~~lsg~~iP~~i~~L~-------------------~~~~~ 546 (876)
T 4ecn_A 489 NLKDLTDVELYNCPNMTQLPD--FLYDL-PELQSLNIACNRGISAAQLKADWTRLA-------------------DDEDT 546 (876)
T ss_dssp GCTTCCEEEEESCTTCCSCCG--GGGGC-SSCCEEECTTCTTSCHHHHHHHHHHHH-------------------HCTTT
T ss_pred cCCCCCEEECcCCCCCccChH--HHhCC-CCCCEEECcCCCCcccccchHHHHhhh-------------------hcccc
Confidence 445555555555544444442 22222 455555555554 444 4444444433 00001
Q ss_pred CCCCcEEEccCCCCCCcch--hhcCCCCccEEEeecCCCCCcchHHhhhcCCCCCCCCCCcEEEccccccccccC-CCCC
Q 047190 288 MASLRHLDLLSNQLREVPK--FLGNMSSLKRLVFSYNELRGELSEFIQNVSSGSTKNSSLEWLYLAFNEITGTIP-DLGG 364 (1025)
Q Consensus 288 l~~L~~L~Ls~n~l~~lp~--~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~l~~~~p-~l~~ 364 (1025)
+++|++|+|++|+++.+|. .++++++|++|++++|.+. .+| .+..++ +|+.|+|++|.++ .+| .+..
T Consensus 547 l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~-------~L~~L~Ls~N~l~-~lp~~l~~ 616 (876)
T 4ecn_A 547 GPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNV-------KLTDLKLDYNQIE-EIPEDFCA 616 (876)
T ss_dssp TTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTS-------EESEEECCSSCCS-CCCTTSCE
T ss_pred cCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCC-------cceEEECcCCccc-cchHHHhh
Confidence 1144444444444444444 4444444444444444444 333 333333 4455555555444 233 2444
Q ss_pred CCC-CcEEEeecccccCcccccccccCC--cceeeccCcccccccchhh--hc--CCCCCcEEECCCCccccccccCCCC
Q 047190 365 FPS-LQILSLENNRLTGTISKSIGQLSK--LELLLLSGNSLRGVISEAL--FS--NLSSLDTLQLSDNSLTLKFSHDWTP 437 (1025)
Q Consensus 365 l~~-L~~L~L~~n~l~~~~p~~l~~l~~--L~~L~L~~N~l~~~~~~~~--~~--~l~~L~~L~Ls~n~l~~~~~~~~~~ 437 (1025)
+++ |++|++++|+++ .+|..+..++. |+.|++++|.+.+.+|... +. .+++|+.|++++|.++
T Consensus 617 l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~--------- 686 (876)
T 4ecn_A 617 FTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ--------- 686 (876)
T ss_dssp ECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC---------
T ss_pred ccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC---------
Confidence 444 555555555544 44444443322 5555555555544333200 01 1223444444444332
Q ss_pred CcccceeeccCCCCCCCCch-hhhcCCcccEEEccCCCCCCchhhhhhhccccceEEEccCccCCCCCCCccccccCCCC
Q 047190 438 PFQLFNIFLGSCKIGPRFPK-WLQSQNQTVALDVSNAGISDIVPDWFWDLTNQLYYLNLSNNEMKGKLPDLSRKFDSYGP 516 (1025)
Q Consensus 438 ~~~L~~L~L~~~~l~~~~p~-~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~l~~~~ 516 (1025)
.+|. .+..+++|+.|++++|.+..+.+..+....+
T Consensus 687 ----------------~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~---------------------------- 722 (876)
T 4ecn_A 687 ----------------KFPTELFATGSPISTIILSNNLMTSIPENSLKPKDG---------------------------- 722 (876)
T ss_dssp ----------------SCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTS----------------------------
T ss_pred ----------------ccCHHHHccCCCCCEEECCCCcCCccChHHhccccc----------------------------
Confidence 1222 2234555555555555555322211110000
Q ss_pred eeecccCcCccCCCCCCCCCceeeccCCcccccccccccccCCcccEEEccCccccccCCCccc--CCCCCCEEEcCCCc
Q 047190 517 GIDVSSNQFDGPIPLLPPNVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNLLSGRLPDCWF--QFDSLAILNLANNS 594 (1025)
Q Consensus 517 ~l~ls~n~l~g~~p~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~--~l~~L~~L~Ls~N~ 594 (1025)
. ...+++|+.|+|++|+++ .+|..+. .+++|+.|+|++|+
T Consensus 723 ------------------~-------------------l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~ 764 (876)
T 4ecn_A 723 ------------------N-------------------YKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNC 764 (876)
T ss_dssp ------------------C-------------------CTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSC
T ss_pred ------------------c-------------------ccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCC
Confidence 0 001234555555555555 4444444 55555555555555
Q ss_pred ccccCCcccccccCCCEEEcc------cCcccccCCccccCCCCccEEeCCCCcCccccChhhhhcCCCCcEEEeecCcC
Q 047190 595 FFGEIPDSMSFLRSIGSLSLY------NNSLSGGLPSFFMNGSQLTLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKF 668 (1025)
Q Consensus 595 l~~~~p~~~~~l~~L~~L~L~------~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l 668 (1025)
+++ +|..+..+++|+.|+|+ +|++.+.+|..+.++++|+.|+|++|++ +.+|..+. ++|+.|+|++|++
T Consensus 765 L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~---~~L~~LdLs~N~l 839 (876)
T 4ecn_A 765 FSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT---PQLYILDIADNPN 839 (876)
T ss_dssp CSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC---SSSCEEECCSCTT
T ss_pred CCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc---CCCCEEECCCCCC
Confidence 554 45555555555555554 4777778888888888888888888888 57887753 5788888888888
Q ss_pred cccCcccccccCcccEEEccccccc
Q 047190 669 HGNIPFQLCYLSHIQILDLSLNNIS 693 (1025)
Q Consensus 669 ~~~~p~~l~~l~~L~~L~Ls~N~l~ 693 (1025)
....+..++....+..+.|.+|++.
T Consensus 840 ~~i~~~~~~~~~~~~~~~L~~n~~~ 864 (876)
T 4ecn_A 840 ISIDVTSVCPYIEAGMYVLLYDKTQ 864 (876)
T ss_dssp CEEECGGGHHHHHTTCCEEECCTTS
T ss_pred CccChHHccccccchheeecCCCcc
Confidence 7776667766666667777777655
No 13
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.1e-45 Score=447.16 Aligned_cols=490 Identities=19% Similarity=0.197 Sum_probs=344.4
Q ss_pred ccEEEcCCCCCCCCchhhhhCCCCCcEEEccCCCCCCc-chhhcCCCCccEEEeecCCCCCcchHHhhhcCCCCCCCCCC
Q 047190 267 VDHIDLGSNQLHGSIPLAFGHMASLRHLDLLSNQLREV-PKFLGNMSSLKRLVFSYNELRGELSEFIQNVSSGSTKNSSL 345 (1025)
Q Consensus 267 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~~L 345 (1025)
+++|++++|.+++..+.+|.++++|++|++++|+++++ |..|.++++|++|++++|.+.+..+..+..++ +|
T Consensus 30 l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-------~L 102 (570)
T 2z63_A 30 TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLS-------SL 102 (570)
T ss_dssp CCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCT-------TC
T ss_pred ccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcc-------cc
Confidence 56666666666655555666666666666666666664 34566666677777766666665555565555 67
Q ss_pred cEEEccccccccccC-CCCCCCCCcEEEeecccccC-cccccccccCCcceeeccCcccccccchhhhcCCCCC----cE
Q 047190 346 EWLYLAFNEITGTIP-DLGGFPSLQILSLENNRLTG-TISKSIGQLSKLELLLLSGNSLRGVISEALFSNLSSL----DT 419 (1025)
Q Consensus 346 ~~L~L~~n~l~~~~p-~l~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L----~~ 419 (1025)
++|++++|.+++..+ .++.+++|++|++++|.+++ .+|..++++++|++|++++|.+.+..+. .++.+++| +.
T Consensus 103 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~~~~~ 181 (570)
T 2z63_A 103 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT-DLRVLHQMPLLNLS 181 (570)
T ss_dssp CEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGG-GGHHHHTCTTCCCE
T ss_pred ccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHH-Hccchhccchhhhh
Confidence 777777776664443 26677777777777777765 3567777777777777777777654433 35555666 67
Q ss_pred EECCCCccccccccCCCCCcccceeeccCCCCCC-CCchhhhcCCcccEEEccCCCC------CCchhhhhhhccc-cce
Q 047190 420 LQLSDNSLTLKFSHDWTPPFQLFNIFLGSCKIGP-RFPKWLQSQNQTVALDVSNAGI------SDIVPDWFWDLTN-QLY 491 (1025)
Q Consensus 420 L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~-~~p~~l~~~~~L~~L~Ls~n~i------~~~~~~~~~~~~~-~L~ 491 (1025)
+++++|.++...+..+... +|+.|++++|.... .++..+..+..++.+++....+ .......+.+... .++
T Consensus 182 L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~ 260 (570)
T 2z63_A 182 LDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIE 260 (570)
T ss_dssp EECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEE
T ss_pred cccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchh
Confidence 7777777776655555443 56666666664332 2455566666665554432211 1111111211110 234
Q ss_pred EEEccCc-cCCCCCCCccccccCCCCeeecccCcCccCCCCCCCCCceeeccCCcccccccccccccCCcccEEEccCcc
Q 047190 492 YLNLSNN-EMKGKLPDLSRKFDSYGPGIDVSSNQFDGPIPLLPPNVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNL 570 (1025)
Q Consensus 492 ~L~Ls~N-~l~~~~p~~~~~~l~~~~~l~ls~n~l~g~~p~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~N~ 570 (1025)
.++++++ .+.+..|... ..+++|+.|++++|.+.+...... .+ +|+.|++++|.
T Consensus 261 ~l~l~~~~~~~~~~~~~~----------------------~~l~~L~~L~l~~~~l~~l~~~~~--~~-~L~~L~l~~n~ 315 (570)
T 2z63_A 261 EFRLAYLDYYLDDIIDLF----------------------NCLTNVSSFSLVSVTIERVKDFSY--NF-GWQHLELVNCK 315 (570)
T ss_dssp EEEEEETTEEESCSTTTT----------------------GGGTTCSEEEEESCEECSCCBCCS--CC-CCSEEEEESCB
T ss_pred hhhhhcchhhhhhchhhh----------------------cCcCcccEEEecCccchhhhhhhc--cC-CccEEeeccCc
Confidence 4444444 2222222110 114677888888887775333222 23 78888998888
Q ss_pred ccccCCCcccCCCCCCEEEcCCCcccccCCcccccccCCCEEEcccCcccccC--CccccCCCCccEEeCCCCcCccccC
Q 047190 571 LSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGL--PSFFMNGSQLTLMDLGKNGLSGEIP 648 (1025)
Q Consensus 571 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~--p~~~~~l~~L~~L~Ls~N~l~g~ip 648 (1025)
+. .+|. ..+++|+.|++++|.+.+..+. ..+++|++|++++|++++.. |..+.++++|++|++++|+++ .+|
T Consensus 316 ~~-~l~~--~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~ 389 (570)
T 2z63_A 316 FG-QFPT--LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMS 389 (570)
T ss_dssp CS-SCCB--CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEE-EEE
T ss_pred cc-ccCc--ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccc-ccc
Confidence 88 5554 4678888999998888776654 67888999999999888654 677888889999999999888 445
Q ss_pred hhhhhcCCCCcEEEeecCcCcccCc-ccccccCcccEEEccccccccccCccccCccccccccccCcccccccccccccc
Q 047190 649 TWIGESLPNLVVLSLRSNKFHGNIP-FQLCYLSHIQILDLSLNNISGIIPKCFHNFTAMTKEKSSNLSIISNYYYNLGLR 727 (1025)
Q Consensus 649 ~~~~~~l~~L~~L~L~~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 727 (1025)
..+. .+++|++|++++|.+.+..| ..+..+++|++|++++|.+++..|..+..+++|
T Consensus 390 ~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L--------------------- 447 (570)
T 2z63_A 390 SNFL-GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL--------------------- 447 (570)
T ss_dssp EEEE-TCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTC---------------------
T ss_pred cccc-ccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcC---------------------
Confidence 4454 68899999999998887766 567888899999999999888888877776666
Q ss_pred cccceeEeecccCCccceeeccccceeEEEcccCCCC-CcChhhHhhcccCCeEeccCccccccCCCCCCCCCCccEEeC
Q 047190 728 GMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLG-GKVLEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDL 806 (1025)
Q Consensus 728 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~-~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdL 806 (1025)
+.|++++|+++ +.+|..+..+++|++|+|++|++++.+|..++.+++|++|+|
T Consensus 448 --------------------------~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 501 (570)
T 2z63_A 448 --------------------------EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 501 (570)
T ss_dssp --------------------------CEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred --------------------------cEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeC
Confidence 88999999998 678899999999999999999999999999999999999999
Q ss_pred CCCcCCCcCcccccCCCCCCEEECcCCcccccCCCCCC
Q 047190 807 SRNHFFGGIPSSLSRLRLLSVMDLSYNNFSGKIPKGTQ 844 (1025)
Q Consensus 807 s~N~l~g~ip~~l~~l~~L~~Ldls~N~l~g~ip~~~~ 844 (1025)
++|++++.+|..+..+++|+.|++++|+++|.+|....
T Consensus 502 ~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~~ 539 (570)
T 2z63_A 502 ASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDY 539 (570)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHH
T ss_pred CCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcchHH
Confidence 99999999888999999999999999999999987543
No 14
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1e-44 Score=438.50 Aligned_cols=490 Identities=21% Similarity=0.208 Sum_probs=303.7
Q ss_pred CCCcEEEccCCCCCCCCCcccccCcccccccccccccCCCCcchhccCCCCCCEEecccCCCCCCCCchhcccCCCCCee
Q 047190 112 QHLTYLDLSWNNFSGSPIPEFIGSLGKLSELALSSAQFAGPIPHQLGNLSKLQVLDLRFNNLFSSGNLDWLSYLSSLRYL 191 (1025)
Q Consensus 112 ~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~Ls~n~i~~~~~~~~l~~l~~L~~L 191 (1025)
+++++|+|++|.+++. .+..|.++++|++|+|++|++++..|..|+++++|++|+|++|.+. ...+..+.++++|++|
T Consensus 28 ~~l~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L 105 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKL 105 (570)
T ss_dssp SSCCEEECCSCCCCEE-CTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEE
T ss_pred ccccEEEccCCccCcc-ChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCC-ccCHhhhcCccccccc
Confidence 4678888888888764 5567778888888888888887766677788888888888877752 2233456666677777
Q ss_pred eccCCcCCCCcchHHhhCCCCCCCEEEcCCCCCCCCCCCcccccccCCcccEEEccCCCCCCCCchhhhhcCCCCccEEE
Q 047190 192 DLADCKLSKFSNWVQVLSNLRSLTNLYLGYCDLPPISTPSLLHINYSKSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHID 271 (1025)
Q Consensus 192 ~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~~~L~~L~ 271 (1025)
++++|.++.++. ..++++++|++|++++|.+.+. .+|..+.++++ |++|+
T Consensus 106 ~L~~n~l~~l~~--~~~~~l~~L~~L~L~~n~l~~~--------------------------~lp~~~~~l~~--L~~L~ 155 (570)
T 2z63_A 106 VAVETNLASLEN--FPIGHLKTLKELNVAHNLIQSF--------------------------KLPEYFSNLTN--LEHLD 155 (570)
T ss_dssp ECTTSCCCCSTT--CSCTTCTTCCEEECCSSCCCCC--------------------------CCCGGGGGCTT--CCEEE
T ss_pred cccccccccCCC--ccccccccccEEecCCCcccee--------------------------cChhhhcccCC--CCEEe
Confidence 776666665432 1244555555555555544432 23445555555 55555
Q ss_pred cCCCCCCCCchhhhhCCCCC----cEEEccCCCCCCcc-hhhcCCCCccEEEeecCCCCC-cchHHhhhcCCCCCCCCCC
Q 047190 272 LGSNQLHGSIPLAFGHMASL----RHLDLLSNQLREVP-KFLGNMSSLKRLVFSYNELRG-ELSEFIQNVSSGSTKNSSL 345 (1025)
Q Consensus 272 Ls~n~l~~~~p~~~~~l~~L----~~L~Ls~n~l~~lp-~~l~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~~~~~~~~L 345 (1025)
+++|.+++..+..++.+++| +.|++++|.+++++ ..+.. .+|++|++++|.... .++..+..+. .+
T Consensus 156 l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~n~~~~~~~~~~~~~l~-------~l 227 (570)
T 2z63_A 156 LSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLHKLTLRNNFDSLNVMKTCIQGLA-------GL 227 (570)
T ss_dssp CTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTT-CEEEEEEEESCCSCTTHHHHHHHTTT-------TC
T ss_pred CcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhcc-CcceeEecccccccccchhhhhcCcc-------cc
Confidence 55555555555555555555 56666666665533 33332 256666666654332 2334444444 45
Q ss_pred cEEEccccccccc-----cCC--CCCCC--CCcEEEeecc-cccCcccccccccCCcceeeccCcccccccchhhhcCCC
Q 047190 346 EWLYLAFNEITGT-----IPD--LGGFP--SLQILSLENN-RLTGTISKSIGQLSKLELLLLSGNSLRGVISEALFSNLS 415 (1025)
Q Consensus 346 ~~L~L~~n~l~~~-----~p~--l~~l~--~L~~L~L~~n-~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~ 415 (1025)
+.+.+....+... ++. +..++ .++.+++.++ .+.+..|..+. .++
T Consensus 228 ~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~-------------------------~l~ 282 (570)
T 2z63_A 228 EVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFN-------------------------CLT 282 (570)
T ss_dssp EEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTG-------------------------GGT
T ss_pred ceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhc-------------------------CcC
Confidence 5444433222110 000 11111 1334444444 33444444444 444
Q ss_pred CCcEEECCCCccccccccCCCCCcccceeeccCCCCCCCCchhhhcCCcccEEEccCCCCCCchhhhhhhccccceEEEc
Q 047190 416 SLDTLQLSDNSLTLKFSHDWTPPFQLFNIFLGSCKIGPRFPKWLQSQNQTVALDVSNAGISDIVPDWFWDLTNQLYYLNL 495 (1025)
Q Consensus 416 ~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~~~p~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L 495 (1025)
+|++|++++|.++. +|.++..+ +|+.|++++|.+..+..
T Consensus 283 ~L~~L~l~~~~l~~-------------------------l~~~~~~~-~L~~L~l~~n~~~~l~~--------------- 321 (570)
T 2z63_A 283 NVSSFSLVSVTIER-------------------------VKDFSYNF-GWQHLELVNCKFGQFPT--------------- 321 (570)
T ss_dssp TCSEEEEESCEECS-------------------------CCBCCSCC-CCSEEEEESCBCSSCCB---------------
T ss_pred cccEEEecCccchh-------------------------hhhhhccC-CccEEeeccCcccccCc---------------
Confidence 45554444444331 11122222 23333333332221100
Q ss_pred cCccCCCCCCCccccccCCCCeeecccCcCccCCCCCCCCCceeeccCCcccccccccccccCCcccEEEccCccccccC
Q 047190 496 SNNEMKGKLPDLSRKFDSYGPGIDVSSNQFDGPIPLLPPNVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNLLSGRL 575 (1025)
Q Consensus 496 s~N~l~~~~p~~~~~~l~~~~~l~ls~n~l~g~~p~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~ 575 (1025)
..+++|+.|++++|.+.+..
T Consensus 322 ------------------------------------------------------------~~l~~L~~L~l~~n~~~~~~ 341 (570)
T 2z63_A 322 ------------------------------------------------------------LKLKSLKRLTFTSNKGGNAF 341 (570)
T ss_dssp ------------------------------------------------------------CBCSSCCEEEEESCBSCCBC
T ss_pred ------------------------------------------------------------ccccccCEEeCcCCcccccc
Confidence 01133555555555555444
Q ss_pred CCcccCCCCCCEEEcCCCcccccC--CcccccccCCCEEEcccCcccccCCccccCCCCccEEeCCCCcCccccChhhhh
Q 047190 576 PDCWFQFDSLAILNLANNSFFGEI--PDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGKNGLSGEIPTWIGE 653 (1025)
Q Consensus 576 p~~~~~l~~L~~L~Ls~N~l~~~~--p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~ 653 (1025)
+. ..+++|++|++++|.+++.. |..+..+++|++|++++|.+++..+. +..+++|+.|++++|++++..|...+.
T Consensus 342 ~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~ 418 (570)
T 2z63_A 342 SE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFL 418 (570)
T ss_dssp CC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTT
T ss_pred cc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhh
Confidence 33 45666666666666665443 45566677777777777777755444 777888888888888887655544334
Q ss_pred cCCCCcEEEeecCcCcccCcccccccCcccEEEccccccc-cccCccccCccccccccccCcccccccccccccccccce
Q 047190 654 SLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNIS-GIIPKCFHNFTAMTKEKSSNLSIISNYYYNLGLRGMLMP 732 (1025)
Q Consensus 654 ~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 732 (1025)
.+++|++|++++|.+.+..|..+..+++|++|++++|+++ +.+|..++.+++|
T Consensus 419 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L-------------------------- 472 (570)
T 2z63_A 419 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL-------------------------- 472 (570)
T ss_dssp TCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTC--------------------------
T ss_pred cCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCC--------------------------
Confidence 6888888888888888888888888888999999999887 5788777776666
Q ss_pred eEeecccCCccceeeccccceeEEEcccCCCCCcChhhHhhcccCCeEeccCccccccCCCCCCCCCCccEEeCCCCcCC
Q 047190 733 LIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSRNHFF 812 (1025)
Q Consensus 733 ~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~ 812 (1025)
+.|||++|++++.+|..+.++++|++|+|++|++++.+|..++.+++|+.|++++|.++
T Consensus 473 ---------------------~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 531 (570)
T 2z63_A 473 ---------------------TFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 531 (570)
T ss_dssp ---------------------CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ---------------------CEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCccc
Confidence 78999999999888999999999999999999999999999999999999999999999
Q ss_pred CcCcc
Q 047190 813 GGIPS 817 (1025)
Q Consensus 813 g~ip~ 817 (1025)
+..|.
T Consensus 532 ~~~~~ 536 (570)
T 2z63_A 532 CSCPR 536 (570)
T ss_dssp CCTTT
T ss_pred CCCcc
Confidence 98774
No 15
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1.6e-44 Score=434.66 Aligned_cols=493 Identities=21% Similarity=0.220 Sum_probs=355.2
Q ss_pred CCCCEEEcCCCCCCCCCCCcccccccCCcccEEEccCCCCCCCCchhhhhcCCCCccEEEcCCCCCCCCchhhhhCCCCC
Q 047190 212 RSLTNLYLGYCDLPPISTPSLLHINYSKSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLHGSIPLAFGHMASL 291 (1025)
Q Consensus 212 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L 291 (1025)
+.....+.+++.++.++.. . .++|++|++++|.+++..|..+..++. |++|++++|.+++..|.+|+.+++|
T Consensus 5 ~~~~~c~~~~~~l~~ip~~---~---~~~L~~L~Ls~n~l~~~~~~~~~~l~~--L~~L~Ls~n~i~~~~~~~~~~l~~L 76 (549)
T 2z81_A 5 DASGVCDGRSRSFTSIPSG---L---TAAMKSLDLSFNKITYIGHGDLRACAN--LQVLILKSSRINTIEGDAFYSLGSL 76 (549)
T ss_dssp CTTSEEECTTSCCSSCCSC---C---CTTCCEEECCSSCCCEECSSTTSSCTT--CCEEECTTSCCCEECTTTTTTCTTC
T ss_pred CCCceEECCCCcccccccc---C---CCCccEEECcCCccCccChhhhhcCCc--ccEEECCCCCcCccChhhccccccC
Confidence 3344567777777766542 1 167888888888888777777888877 8888888888888777888888888
Q ss_pred cEEEccCCCCCCcc-hhhcCCCCccEEEeecCCCCCc-chHHhhhcCCCCCCCCCCcEEEccccccccccC--CCCCCCC
Q 047190 292 RHLDLLSNQLREVP-KFLGNMSSLKRLVFSYNELRGE-LSEFIQNVSSGSTKNSSLEWLYLAFNEITGTIP--DLGGFPS 367 (1025)
Q Consensus 292 ~~L~Ls~n~l~~lp-~~l~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~~~~~~~~L~~L~L~~n~l~~~~p--~l~~l~~ 367 (1025)
++|++++|.++++| ..++++++|++|++++|.+++. .|..+..++ +|++|++++|.+.+.+| .+..+++
T Consensus 77 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~-------~L~~L~L~~n~~~~~~~~~~~~~l~~ 149 (549)
T 2z81_A 77 EHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLT-------NLQTLRIGNVETFSEIRRIDFAGLTS 149 (549)
T ss_dssp CEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCT-------TCCEEEEEESSSCCEECTTTTTTCCE
T ss_pred CEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccC-------CccEEECCCCccccccCHhhhhcccc
Confidence 88888888888854 4588888888888888888763 445555555 88888888887544554 3788888
Q ss_pred CcEEEeecccccCcccccccccCCcceeeccCcccccccchhhhcCCCCCcEEECCCCccccccccCCCCCcccceeecc
Q 047190 368 LQILSLENNRLTGTISKSIGQLSKLELLLLSGNSLRGVISEALFSNLSSLDTLQLSDNSLTLKFSHDWTPPFQLFNIFLG 447 (1025)
Q Consensus 368 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~ 447 (1025)
|++|++++|++++..|..++.+++|++|+++.|.+. .++...+..+++|++|++++|++++....
T Consensus 150 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-------------- 214 (549)
T 2z81_A 150 LNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFS-------------- 214 (549)
T ss_dssp EEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBCTTCCCC--------------
T ss_pred cCeeeccCCcccccChhhhhccccCceEecccCccc-ccchhhHhhcccccEEEccCCcccccccc--------------
Confidence 888888888888888888888888888888888875 45555566788888888888877643110
Q ss_pred CCCCCCCCchhhhcCCcccEEEccCCCCCCchhhhhhhc---cccceEEEccCccCCCCCCCccccccCCCCeeecccCc
Q 047190 448 SCKIGPRFPKWLQSQNQTVALDVSNAGISDIVPDWFWDL---TNQLYYLNLSNNEMKGKLPDLSRKFDSYGPGIDVSSNQ 524 (1025)
Q Consensus 448 ~~~l~~~~p~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~---~~~L~~L~Ls~N~l~~~~p~~~~~~l~~~~~l~ls~n~ 524 (1025)
.......+++|+.|++++|.+.+..+..+... ..+|+.+++++|.+.+... +. .
T Consensus 215 -------~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~-~~---------------~ 271 (549)
T 2z81_A 215 -------PLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGD-FN---------------P 271 (549)
T ss_dssp -------CCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSC-CC---------------C
T ss_pred -------ccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccccccccccccc-cc---------------c
Confidence 00112345677778888887776665554322 2367777777777654210 00 0
Q ss_pred CccCCCCCCCCCceeeccCCcccccccccccccCCcccEEEccCcccccc-----CCCcccCCCCCCEEEcCCCcccccC
Q 047190 525 FDGPIPLLPPNVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNLLSGR-----LPDCWFQFDSLAILNLANNSFFGEI 599 (1025)
Q Consensus 525 l~g~~p~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~-----~p~~~~~l~~L~~L~Ls~N~l~~~~ 599 (1025)
.....+... ++|+.|++.++.+... ++..+...++|+.|++++|.+. .+
T Consensus 272 ~~~~~~~~l-------------------------~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~i 325 (549)
T 2z81_A 272 SESDVVSEL-------------------------GKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LV 325 (549)
T ss_dssp CTTTCCCCC-------------------------TTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CC
T ss_pred cchhhhhhh-------------------------cccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cC
Confidence 000111123 3345555555543321 1222333567888888888876 55
Q ss_pred Cccc-ccccCCCEEEcccCcccccCC---ccccCCCCccEEeCCCCcCccccCh--hhhhcCCCCcEEEeecCcCcccCc
Q 047190 600 PDSM-SFLRSIGSLSLYNNSLSGGLP---SFFMNGSQLTLMDLGKNGLSGEIPT--WIGESLPNLVVLSLRSNKFHGNIP 673 (1025)
Q Consensus 600 p~~~-~~l~~L~~L~L~~N~l~~~~p---~~~~~l~~L~~L~Ls~N~l~g~ip~--~~~~~l~~L~~L~L~~N~l~~~~p 673 (1025)
|..+ ..+++|++|++++|++++.+| ..+..+++|++|++++|++++ +|. ..+..+++|++|+|++|+++ .+|
T Consensus 326 p~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp 403 (549)
T 2z81_A 326 PCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRS-MQKTGEILLTLKNLTSLDISRNTFH-PMP 403 (549)
T ss_dssp CHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCC-HHHHHHHGGGCTTCCEEECTTCCCC-CCC
T ss_pred CHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccc-cccchhhhhcCCCCCEEECCCCCCc-cCC
Confidence 5555 467888888888888887654 336778888889999888873 432 22336889999999999888 578
Q ss_pred ccccccCcccEEEccccccccccCccccCccccccccccCcccccccccccccccccceeEeecccCCccceeeccccce
Q 047190 674 FQLCYLSHIQILDLSLNNISGIIPKCFHNFTAMTKEKSSNLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLI 753 (1025)
Q Consensus 674 ~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 753 (1025)
..+..+++|++|++++|++++ +|..+. +.|
T Consensus 404 ~~~~~~~~L~~L~Ls~N~l~~-l~~~~~-------------------------------------------------~~L 433 (549)
T 2z81_A 404 DSCQWPEKMRFLNLSSTGIRV-VKTCIP-------------------------------------------------QTL 433 (549)
T ss_dssp SCCCCCTTCCEEECTTSCCSC-CCTTSC-------------------------------------------------TTC
T ss_pred hhhcccccccEEECCCCCccc-ccchhc-------------------------------------------------CCc
Confidence 888888999999999998873 333221 123
Q ss_pred eEEEcccCCCCCcChhhHhhcccCCeEeccCccccccCCCCCCCCCCccEEeCCCCcCCCcCcccccCCCCCCEEECcCC
Q 047190 754 KIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSRNHFFGGIPSSLSRLRLLSVMDLSYN 833 (1025)
Q Consensus 754 ~~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~Ldls~N 833 (1025)
+.|||++|++++.+ ..+++|++|+|++|+|+ .+|. .+.+++|++|||++|++++.+|..+..+++|+.|++++|
T Consensus 434 ~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N 507 (549)
T 2z81_A 434 EVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTN 507 (549)
T ss_dssp SEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSS
T ss_pred eEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCC
Confidence 88999999999864 57899999999999999 6776 578999999999999999999999999999999999999
Q ss_pred cccccCCC
Q 047190 834 NFSGKIPK 841 (1025)
Q Consensus 834 ~l~g~ip~ 841 (1025)
++.|.+|.
T Consensus 508 ~~~~~~~~ 515 (549)
T 2z81_A 508 PWDCSCPR 515 (549)
T ss_dssp CBCCCHHH
T ss_pred CccCCCcc
Confidence 99999884
No 16
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=4.4e-43 Score=430.07 Aligned_cols=523 Identities=23% Similarity=0.214 Sum_probs=331.9
Q ss_pred ccccCcCCCCCcEEEccCCCCCCCCCcccccCcccccccccccccCCCCcchhccCCCCCCEEecccCCCCCCCCchhcc
Q 047190 104 INPSLLKLQHLTYLDLSWNNFSGSPIPEFIGSLGKLSELALSSAQFAGPIPHQLGNLSKLQVLDLRFNNLFSSGNLDWLS 183 (1025)
Q Consensus 104 l~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~Ls~n~i~~~~~~~~l~ 183 (1025)
+|..+. +++++|||++|.|+++ .|..|.++++|++|+|++|+|++..|..|.+|++|++|+|++|++ ....+..|.
T Consensus 46 vP~~lp--~~~~~LdLs~N~i~~l-~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l-~~l~~~~f~ 121 (635)
T 4g8a_A 46 IPDNLP--FSTKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI-QSLALGAFS 121 (635)
T ss_dssp CCSSSC--TTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC-CEECGGGGT
T ss_pred cCCCCC--cCCCEEEeeCCCCCCC-CHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcC-CCCCHHHhc
Confidence 454442 4788999999999865 456889999999999999999876777888899999999998876 223345567
Q ss_pred cCCCCCeeeccCCcCCCCcchHHhhCCCCCCCEEEcCCCCCCCCCCCcccccccCCcccEEEccCCCCCCCCchhhhhcC
Q 047190 184 YLSSLRYLDLADCKLSKFSNWVQVLSNLRSLTNLYLGYCDLPPISTPSLLHINYSKSLEVIDLSNNYLTNSIYPWLFNVS 263 (1025)
Q Consensus 184 ~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~ 263 (1025)
++++|++|+|++|+++.++. ..++++++|++|++++|.+.+.. .|..+..+.
T Consensus 122 ~L~~L~~L~Ls~N~l~~l~~--~~~~~L~~L~~L~Ls~N~l~~~~--------------------------~~~~~~~l~ 173 (635)
T 4g8a_A 122 GLSSLQKLVAVETNLASLEN--FPIGHLKTLKELNVAHNLIQSFK--------------------------LPEYFSNLT 173 (635)
T ss_dssp TCTTCCEEECTTSCCCCSTT--CCCTTCTTCCEEECCSSCCCCCC--------------------------CCGGGGGCT
T ss_pred CCCCCCEEECCCCcCCCCCh--hhhhcCcccCeeccccCccccCC--------------------------Cchhhccch
Confidence 77777777777777766542 23555666666666665554432 233334444
Q ss_pred CCCccEEEcCCCCCCCCchhhhhCCCC----CcEEEccCCCCCCcchhhcCCCCccEEEeecCCCCCcc-hHHhhhcCCC
Q 047190 264 SNLVDHIDLGSNQLHGSIPLAFGHMAS----LRHLDLLSNQLREVPKFLGNMSSLKRLVFSYNELRGEL-SEFIQNVSSG 338 (1025)
Q Consensus 264 ~~~L~~L~Ls~n~l~~~~p~~~~~l~~----L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~~ 338 (1025)
. |++|++++|.+++..+..+..+.+ ...++++.|.++.++........++.+++.+|.....+ +..+..+.
T Consensus 174 ~--L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~-- 249 (635)
T 4g8a_A 174 N--LEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLA-- 249 (635)
T ss_dssp T--CCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTT--
T ss_pred h--hhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCc--
Confidence 4 555555555555444444443322 23566667766665554445556667777766554332 23344444
Q ss_pred CCCCCCCcEEEccccccccc--cC-----CCCCCCCCcEEEeecccccCcccccccccCCcceeeccCcccccccchhhh
Q 047190 339 STKNSSLEWLYLAFNEITGT--IP-----DLGGFPSLQILSLENNRLTGTISKSIGQLSKLELLLLSGNSLRGVISEALF 411 (1025)
Q Consensus 339 ~~~~~~L~~L~L~~n~l~~~--~p-----~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~ 411 (1025)
.++...+..+..... +. .+..+..+....+..+....... .+. ..+
T Consensus 250 -----~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~---------------------~~~-~~~ 302 (635)
T 4g8a_A 250 -----GLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLD---------------------GII-DLF 302 (635)
T ss_dssp -----TCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEE---------------------ECT-TTT
T ss_pred -----ccccccccccccccccccccccccccccccchhhhhhhhhhhccccc---------------------chh-hhh
Confidence 555555443322211 00 12223333333333322211100 000 113
Q ss_pred cCCCCCcEEECCCCccccccccCCCCCcccceeeccCCCCCCCCchhhhcCCcccEEEccCCCCCCchhhhhhhccccce
Q 047190 412 SNLSSLDTLQLSDNSLTLKFSHDWTPPFQLFNIFLGSCKIGPRFPKWLQSQNQTVALDVSNAGISDIVPDWFWDLTNQLY 491 (1025)
Q Consensus 412 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~~~p~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~ 491 (1025)
..+.+++.+++.++.+..... +.... .++
T Consensus 303 ~~~~~l~~l~~~~~~~~~~~~--------------------------~~~~~-------------------------~L~ 331 (635)
T 4g8a_A 303 NCLTNVSSFSLVSVTIERVKD--------------------------FSYNF-------------------------GWQ 331 (635)
T ss_dssp GGGTTCSEEEEESCEEEECGG--------------------------GGSCC-------------------------CCS
T ss_pred hhhcccccccccccccccccc--------------------------cccch-------------------------hhh
Confidence 344555555555544332110 11111 233
Q ss_pred EEEccCccCCCCCCCccccccCCCCeeecccCcCccCCCCCCCCCceeeccCCcccccccccccccCCcccEEEccCccc
Q 047190 492 YLNLSNNEMKGKLPDLSRKFDSYGPGIDVSSNQFDGPIPLLPPNVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNLL 571 (1025)
Q Consensus 492 ~L~Ls~N~l~~~~p~~~~~~l~~~~~l~ls~n~l~g~~p~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~N~l 571 (1025)
.|++++|.+.+..+ . .+..|+.+++++|.+
T Consensus 332 ~L~l~~~~~~~~~~-------------------------~-------------------------~l~~L~~l~l~~n~~ 361 (635)
T 4g8a_A 332 HLELVNCKFGQFPT-------------------------L-------------------------KLKSLKRLTFTSNKG 361 (635)
T ss_dssp EEEEESCEESSCCC-------------------------C-------------------------BCTTCCEEEEESCCS
T ss_pred hhhcccccccCcCc-------------------------c-------------------------cchhhhhcccccccC
Confidence 33333332221000 0 012344555555544
Q ss_pred cccCCCcccCCCCCCEEEcCCCcccc--cCCcccccccCCCEEEcccCcccccCCccccCCCCccEEeCCCCcCccccCh
Q 047190 572 SGRLPDCWFQFDSLAILNLANNSFFG--EIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGKNGLSGEIPT 649 (1025)
Q Consensus 572 ~~~~p~~~~~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~ 649 (1025)
.... ....+++|+.|++++|.+.. ..+..+..+.+|+.+++..|.+.. .+..+..+++|+.++++.|...+..+.
T Consensus 362 ~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~ 438 (635)
T 4g8a_A 362 GNAF--SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEF 438 (635)
T ss_dssp CCBC--CCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTSS
T ss_pred CCCc--ccccccccccchhhccccccccccccchhhhhhhhhhhcccccccc-ccccccccccccchhhhhccccccccc
Confidence 4222 23345666666666666542 344455556677777777777664 334566778888888887777766665
Q ss_pred hhhhcCCCCcEEEeecCcCcccCcccccccCcccEEEccccccc-cccCccccCccccccccccCccccccccccccccc
Q 047190 650 WIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNIS-GIIPKCFHNFTAMTKEKSSNLSIISNYYYNLGLRG 728 (1025)
Q Consensus 650 ~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 728 (1025)
..+..+++++.+++++|.+.+..+..+..+++|+.|+|++|++. +.+|..|..+++|
T Consensus 439 ~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L---------------------- 496 (635)
T 4g8a_A 439 SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL---------------------- 496 (635)
T ss_dssp CTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTC----------------------
T ss_pred cccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhcccc----------------------
Confidence 55557888888888888888888888888889999999988754 4567777776665
Q ss_pred ccceeEeecccCCccceeeccccceeEEEcccCCCCCcChhhHhhcccCCeEeccCccccccCCCCCCCCCCccEEeCCC
Q 047190 729 MLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSR 808 (1025)
Q Consensus 729 ~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~ 808 (1025)
+.|||++|++++.+|..|.++++|++|+|++|+|++.+|..|+++++|++|||++
T Consensus 497 -------------------------~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~ 551 (635)
T 4g8a_A 497 -------------------------TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSL 551 (635)
T ss_dssp -------------------------CEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTT
T ss_pred -------------------------CEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCC
Confidence 7899999999999999999999999999999999999999999999999999999
Q ss_pred CcCCCcCcccccCC-CCCCEEECcCCcccccCC
Q 047190 809 NHFFGGIPSSLSRL-RLLSVMDLSYNNFSGKIP 840 (1025)
Q Consensus 809 N~l~g~ip~~l~~l-~~L~~Ldls~N~l~g~ip 840 (1025)
|+|++.+|+.+..+ ++|++|++++|+++|.+.
T Consensus 552 N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~ 584 (635)
T 4g8a_A 552 NHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 584 (635)
T ss_dssp SCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGG
T ss_pred CcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCC
Confidence 99999999999998 789999999999998754
No 17
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.7e-44 Score=431.12 Aligned_cols=463 Identities=18% Similarity=0.196 Sum_probs=291.4
Q ss_pred EEEcCCCCCCCCCCCcccccccCCcccEEEccCCCCCCCCchhhhhcCCCCccEEEcCCCCCCCCchhhhhCCCCCcEEE
Q 047190 216 NLYLGYCDLPPISTPSLLHINYSKSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLHGSIPLAFGHMASLRHLD 295 (1025)
Q Consensus 216 ~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 295 (1025)
+|++++|.++.++.. + .++|++|++++|.+++..|..+..+.. |++|++++|.+++..|..|+++++|++|+
T Consensus 4 ~l~ls~n~l~~ip~~---~---~~~L~~L~Ls~n~i~~~~~~~~~~l~~--L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 75 (520)
T 2z7x_B 4 LVDRSKNGLIHVPKD---L---SQKTTILNISQNYISELWTSDILSLSK--LRILIISHNRIQYLDISVFKFNQELEYLD 75 (520)
T ss_dssp EEECTTSCCSSCCCS---C---CTTCSEEECCSSCCCCCCHHHHTTCTT--CCEEECCSSCCCEEEGGGGTTCTTCCEEE
T ss_pred eEecCCCCccccccc---c---cccccEEECCCCcccccChhhcccccc--ccEEecCCCccCCcChHHhhcccCCCEEe
Confidence 455555555543321 1 166777777777777666667777777 77777777777777777777777888888
Q ss_pred ccCCCCCCcchhhcCCCCccEEEeecCCCCC-cchHHhhhcCCCCCCCCCCcEEEccccccccccCCCCCCCCC--cEEE
Q 047190 296 LLSNQLREVPKFLGNMSSLKRLVFSYNELRG-ELSEFIQNVSSGSTKNSSLEWLYLAFNEITGTIPDLGGFPSL--QILS 372 (1025)
Q Consensus 296 Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~~~~~~~~L~~L~L~~n~l~~~~p~l~~l~~L--~~L~ 372 (1025)
+++|+++++|.. .+++|++|++++|.+++ .+|..+..++ +|++|++++|.+++ ..+..+++| ++|+
T Consensus 76 Ls~N~l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~-------~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~ 144 (520)
T 2z7x_B 76 LSHNKLVKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMS-------QLKFLGLSTTHLEK--SSVLPIAHLNISKVL 144 (520)
T ss_dssp CCSSCCCEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCT-------TCCEEEEEESSCCG--GGGGGGTTSCEEEEE
T ss_pred cCCCceeecCcc--ccCCccEEeccCCccccccchhhhccCC-------cceEEEecCcccch--hhccccccceeeEEE
Confidence 888877777765 67777777777777776 3566677666 77777777777764 235556666 7777
Q ss_pred eecccc--cCcccccccccC-CcceeeccCcccccccchhhhcCCCCCcEEECCCCccccccccCCCCCcccceeeccCC
Q 047190 373 LENNRL--TGTISKSIGQLS-KLELLLLSGNSLRGVISEALFSNLSSLDTLQLSDNSLTLKFSHDWTPPFQLFNIFLGSC 449 (1025)
Q Consensus 373 L~~n~l--~~~~p~~l~~l~-~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~~ 449 (1025)
+++|.+ .+..|..+..+. +...+++++|.+.+.++...+.++++|+.+++++|.......
T Consensus 145 l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~----------------- 207 (520)
T 2z7x_B 145 LVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCS----------------- 207 (520)
T ss_dssp EEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTH-----------------
T ss_pred eecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccc-----------------
Confidence 777777 666666665544 233456666666655555455555666655555553100000
Q ss_pred CCCCCCchhhhcCCcccEEEccCCCCCCchhhhhhhccccceEEEccCccCCCCCCCccccccCCCCeeecccCcCccCC
Q 047190 450 KIGPRFPKWLQSQNQTVALDVSNAGISDIVPDWFWDLTNQLYYLNLSNNEMKGKLPDLSRKFDSYGPGIDVSSNQFDGPI 529 (1025)
Q Consensus 450 ~l~~~~p~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~l~~~~~l~ls~n~l~g~~ 529 (1025)
.+.+.+| .+..+++|+.|++++|.+.+..+..+...
T Consensus 208 ~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~------------------------------------------- 243 (520)
T 2z7x_B 208 YFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQL------------------------------------------- 243 (520)
T ss_dssp HHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHH-------------------------------------------
T ss_pred eeecchh-hhccccchhhccccccccCHHHHHHHHHH-------------------------------------------
Confidence 0001111 23444444444444444333222111110
Q ss_pred CCCCCCCceeeccCCcccccccccccccCCcccEEEccCccccccCCCcc-----cCCCCCCEEEcCCCcccccCC-ccc
Q 047190 530 PLLPPNVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNLLSGRLPDCW-----FQFDSLAILNLANNSFFGEIP-DSM 603 (1025)
Q Consensus 530 p~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~-----~~l~~L~~L~Ls~N~l~~~~p-~~~ 603 (1025)
. ..++|++|++++|.++|.+|..+ ..+++|+.+++++|.+ .+| ..+
T Consensus 244 -----------------------~---~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~ 295 (520)
T 2z7x_B 244 -----------------------V---WHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYI 295 (520)
T ss_dssp -----------------------H---HTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHH
T ss_pred -----------------------h---hhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhh
Confidence 0 01345666666666665566555 5566666666666666 333 333
Q ss_pred ccc---cCCCEEEcccCcccccCCccccCCCCccEEeCCCCcCccccChhhhhcCCCCcEEEeecCcCcc--cCcccccc
Q 047190 604 SFL---RSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHG--NIPFQLCY 678 (1025)
Q Consensus 604 ~~l---~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~--~~p~~l~~ 678 (1025)
..+ .+|+.|++++|.+.+.. .+..+++|++|++++|++++.+|.++. .+++|++|+|++|++++ .+|..+..
T Consensus 296 ~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~N~l~~l~~~~~~~~~ 372 (520)
T 2z7x_B 296 YEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCG-HLTELETLILQMNQLKELSKIAEMTTQ 372 (520)
T ss_dssp HHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCC-CCSSCCEEECCSSCCCBHHHHHHHHTT
T ss_pred hcccccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhhhc-cCCCCCEEEccCCccCccccchHHHhh
Confidence 333 45666666666665322 124566677777777777666666665 56777777777777765 44566677
Q ss_pred cCcccEEEccccccccccCcc-ccCccccccccccCcccccccccccccccccceeEeecccCCccceeeccccceeEEE
Q 047190 679 LSHIQILDLSLNNISGIIPKC-FHNFTAMTKEKSSNLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIID 757 (1025)
Q Consensus 679 l~~L~~L~Ls~N~l~~~~p~~-~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Ld 757 (1025)
+++|++|++++|++++.+|.. +..+++| +.|+
T Consensus 373 l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L-----------------------------------------------~~L~ 405 (520)
T 2z7x_B 373 MKSLQQLDISQNSVSYDEKKGDCSWTKSL-----------------------------------------------LSLN 405 (520)
T ss_dssp CTTCCEEECCSSCCBCCGGGCSCCCCTTC-----------------------------------------------CEEE
T ss_pred CCCCCEEECCCCcCCcccccchhccCccC-----------------------------------------------CEEE
Confidence 777777777777777645542 4333333 6777
Q ss_pred cccCCCCCcChhhHhhcccCCeEeccCccccccCCCCCCCCCCccEEeCCCCcCCCcCccc-ccCCCCCCEEECcCCccc
Q 047190 758 LSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSRNHFFGGIPSS-LSRLRLLSVMDLSYNNFS 836 (1025)
Q Consensus 758 Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~-l~~l~~L~~Ldls~N~l~ 836 (1025)
+++|++++.+|..+. +.|+.|+|++|+++ .+|..+..+++|++|||++|++++ +|.. +..+++|+.|++++|+++
T Consensus 406 Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~ 481 (520)
T 2z7x_B 406 MSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKS-VPDGIFDRLTSLQKIWLHTNPWD 481 (520)
T ss_dssp CCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCBC
T ss_pred CcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCc-cCHHHhccCCcccEEECcCCCCc
Confidence 777777776666554 67888888888888 778777788899999999999985 5554 888899999999999998
Q ss_pred ccCC
Q 047190 837 GKIP 840 (1025)
Q Consensus 837 g~ip 840 (1025)
|.++
T Consensus 482 c~c~ 485 (520)
T 2z7x_B 482 CSCP 485 (520)
T ss_dssp CCHH
T ss_pred ccCC
Confidence 8765
No 18
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1.1e-43 Score=427.36 Aligned_cols=492 Identities=17% Similarity=0.185 Sum_probs=372.4
Q ss_pred CCCCeeeccCCcCCCCcchHHhhCCCCCCCEEEcCCCCCCCCCCCcccccccCCcccEEEccCCCCCCCCchhhhhcCCC
Q 047190 186 SSLRYLDLADCKLSKFSNWVQVLSNLRSLTNLYLGYCDLPPISTPSLLHINYSKSLEVIDLSNNYLTNSIYPWLFNVSSN 265 (1025)
Q Consensus 186 ~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~~ 265 (1025)
+.....+.+++.++.+|. .+ .++|++|++++|.+++..+. .+.++ ++|++|++++|.+++..|..+..+.+
T Consensus 5 ~~~~~c~~~~~~l~~ip~---~~--~~~L~~L~Ls~n~l~~~~~~--~~~~l-~~L~~L~Ls~n~i~~~~~~~~~~l~~- 75 (549)
T 2z81_A 5 DASGVCDGRSRSFTSIPS---GL--TAAMKSLDLSFNKITYIGHG--DLRAC-ANLQVLILKSSRINTIEGDAFYSLGS- 75 (549)
T ss_dssp CTTSEEECTTSCCSSCCS---CC--CTTCCEEECCSSCCCEECSS--TTSSC-TTCCEEECTTSCCCEECTTTTTTCTT-
T ss_pred CCCceEECCCCccccccc---cC--CCCccEEECcCCccCccChh--hhhcC-CcccEEECCCCCcCccChhhcccccc-
Confidence 444557888888888764 22 37999999999999988765 33444 99999999999999888888999999
Q ss_pred CccEEEcCCCCCCCCchhhhhCCCCCcEEEccCCCCCC--cchhhcCCCCccEEEeecCCCCCcch-HHhhhcCCCCCCC
Q 047190 266 LVDHIDLGSNQLHGSIPLAFGHMASLRHLDLLSNQLRE--VPKFLGNMSSLKRLVFSYNELRGELS-EFIQNVSSGSTKN 342 (1025)
Q Consensus 266 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~--lp~~l~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~~~~~~ 342 (1025)
|++|++++|.+++..|..|+.+++|++|++++|.+++ +|..++++++|++|++++|.+.+.+| ..+..++
T Consensus 76 -L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~------ 148 (549)
T 2z81_A 76 -LEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLT------ 148 (549)
T ss_dssp -CCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCC------
T ss_pred -CCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhccc------
Confidence 9999999999999999899999999999999999996 56789999999999999999555554 5677766
Q ss_pred CCCcEEEccccccccccCC-CCCCCCCcEEEeecccccCcccccccccCCcceeeccCccccccc--chhhhcCCCCCcE
Q 047190 343 SSLEWLYLAFNEITGTIPD-LGGFPSLQILSLENNRLTGTISKSIGQLSKLELLLLSGNSLRGVI--SEALFSNLSSLDT 419 (1025)
Q Consensus 343 ~~L~~L~L~~n~l~~~~p~-l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~--~~~~~~~l~~L~~ 419 (1025)
+|++|++++|.+++..|. ++.+++|++|++++|.+.......+..+++|++|++++|.+.+.. +......+++|+.
T Consensus 149 -~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~ 227 (549)
T 2z81_A 149 -SLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKK 227 (549)
T ss_dssp -EEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCE
T ss_pred -ccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccc
Confidence 999999999999988776 899999999999999987433333456899999999999998742 2223456788999
Q ss_pred EECCCCccccccccCCCCCcccceeeccCCCCCCCCchhhhcCCcccEEEccCCCCCCchh------hhhhhccccceEE
Q 047190 420 LQLSDNSLTLKFSHDWTPPFQLFNIFLGSCKIGPRFPKWLQSQNQTVALDVSNAGISDIVP------DWFWDLTNQLYYL 493 (1025)
Q Consensus 420 L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~~~p~~l~~~~~L~~L~Ls~n~i~~~~~------~~~~~~~~~L~~L 493 (1025)
|++++|.+++..... ++..+..+.+++.+++++|.+.+... ..+. ...+++.|
T Consensus 228 L~l~~n~l~~~~~~~--------------------l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~-~l~~L~~L 286 (549)
T 2z81_A 228 LAFRGSVLTDESFNE--------------------LLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVS-ELGKVETV 286 (549)
T ss_dssp EEEESCEEEHHHHHH--------------------HHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCC-CCTTCCEE
T ss_pred eeccccccchhHHHH--------------------HHHHhhhhccccccccccccccccccccccchhhhh-hhcccccc
Confidence 999999876543221 12223344455555555554433210 0111 12356666
Q ss_pred EccCccCCCCCCCccccccCCCCeeecccCcCccCCCCCCCCCceeeccCCcccccccccccccCCcccEEEccCccccc
Q 047190 494 NLSNNEMKGKLPDLSRKFDSYGPGIDVSSNQFDGPIPLLPPNVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNLLSG 573 (1025)
Q Consensus 494 ~Ls~N~l~~~~p~~~~~~l~~~~~l~ls~n~l~g~~p~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~ 573 (1025)
++.++.+..... ... ++.. ....++|+.|++++|.+.
T Consensus 287 ~l~~~~i~~~~~---------------------------~~~--------------l~~~-~~~~~~L~~L~l~~n~l~- 323 (549)
T 2z81_A 287 TIRRLHIPQFYL---------------------------FYD--------------LSTV-YSLLEKVKRITVENSKVF- 323 (549)
T ss_dssp EEESCBCSCGGG---------------------------SCC--------------CCHH-HHHSTTCCEEEEESSCCC-
T ss_pred cccccccchhhh---------------------------ccc--------------chhh-hhhcccceEEEeccCccc-
Confidence 666665431000 000 0000 011356888888888887
Q ss_pred cCCCcc-cCCCCCCEEEcCCCcccccCC---cccccccCCCEEEcccCcccccCC--ccccCCCCccEEeCCCCcCcccc
Q 047190 574 RLPDCW-FQFDSLAILNLANNSFFGEIP---DSMSFLRSIGSLSLYNNSLSGGLP--SFFMNGSQLTLMDLGKNGLSGEI 647 (1025)
Q Consensus 574 ~~p~~~-~~l~~L~~L~Ls~N~l~~~~p---~~~~~l~~L~~L~L~~N~l~~~~p--~~~~~l~~L~~L~Ls~N~l~g~i 647 (1025)
.+|..+ ..+++|++|++++|++++.+| ..++.+++|++|++++|++++..+ ..+..+++|++|++++|+++ .+
T Consensus 324 ~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l 402 (549)
T 2z81_A 324 LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PM 402 (549)
T ss_dssp CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CC
T ss_pred cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cC
Confidence 566555 468888888888888887653 346778888889998888876543 45788889999999999988 78
Q ss_pred ChhhhhcCCCCcEEEeecCcCcccCcccccccCcccEEEccccccccccCccccCccccccccccCcccccccccccccc
Q 047190 648 PTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPKCFHNFTAMTKEKSSNLSIISNYYYNLGLR 727 (1025)
Q Consensus 648 p~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 727 (1025)
|..+. .+++|++|++++|++++ +|..+ .++|++|+|++|++++.+ ..+++
T Consensus 403 p~~~~-~~~~L~~L~Ls~N~l~~-l~~~~--~~~L~~L~Ls~N~l~~~~----~~l~~---------------------- 452 (549)
T 2z81_A 403 PDSCQ-WPEKMRFLNLSSTGIRV-VKTCI--PQTLEVLDVSNNNLDSFS----LFLPR---------------------- 452 (549)
T ss_dssp CSCCC-CCTTCCEEECTTSCCSC-CCTTS--CTTCSEEECCSSCCSCCC----CCCTT----------------------
T ss_pred Chhhc-ccccccEEECCCCCccc-ccchh--cCCceEEECCCCChhhhc----ccCCh----------------------
Confidence 88776 68889999999998874 34333 268999999999988653 23333
Q ss_pred cccceeEeecccCCccceeeccccceeEEEcccCCCCCcChhhHhhcccCCeEeccCccccccCCCCCCCCCCccEEeCC
Q 047190 728 GMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLS 807 (1025)
Q Consensus 728 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs 807 (1025)
|+.|||++|+++ .+|. ...+++|++|+|++|++++.+|..++.+++|+.|||+
T Consensus 453 -------------------------L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~ 505 (549)
T 2z81_A 453 -------------------------LQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLH 505 (549)
T ss_dssp -------------------------CCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECC
T ss_pred -------------------------hcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEec
Confidence 388999999998 5665 5789999999999999999999999999999999999
Q ss_pred CCcCCCcCc
Q 047190 808 RNHFFGGIP 816 (1025)
Q Consensus 808 ~N~l~g~ip 816 (1025)
+|.+++..|
T Consensus 506 ~N~~~~~~~ 514 (549)
T 2z81_A 506 TNPWDCSCP 514 (549)
T ss_dssp SSCBCCCHH
T ss_pred CCCccCCCc
Confidence 999999887
No 19
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=2.3e-44 Score=438.13 Aligned_cols=438 Identities=17% Similarity=0.222 Sum_probs=316.5
Q ss_pred ccEEEcCCCCCCCCchhhhhCCCCCcEEEccCCCCC-------------CcchhhcCCCCccEEEeecCCCCCcchHHhh
Q 047190 267 VDHIDLGSNQLHGSIPLAFGHMASLRHLDLLSNQLR-------------EVPKFLGNMSSLKRLVFSYNELRGELSEFIQ 333 (1025)
Q Consensus 267 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~-------------~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~~~ 333 (1025)
++.|+|+++.+.|.+|.+++++++|++|+|++|.+. .+|... +..|+ +++++|.+.+.+|..+.
T Consensus 83 V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~~~ 159 (636)
T 4eco_A 83 VTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPREDFS 159 (636)
T ss_dssp EEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGGSC
T ss_pred EEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchhhHH
Confidence 667777777777777777777777777777777541 233333 44566 77777777776665544
Q ss_pred hcCC------------CCCCCCCCcEEEcc--ccccccccCC-CCCCCCCcEEEeecccccCc-----------------
Q 047190 334 NVSS------------GSTKNSSLEWLYLA--FNEITGTIPD-LGGFPSLQILSLENNRLTGT----------------- 381 (1025)
Q Consensus 334 ~l~~------------~~~~~~~L~~L~L~--~n~l~~~~p~-l~~l~~L~~L~L~~n~l~~~----------------- 381 (1025)
.+.. .......++.+.+. .|++++ +|. ++++++|++|++++|++++.
T Consensus 160 ~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ 238 (636)
T 4eco_A 160 DLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQY 238 (636)
T ss_dssp HHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHH
T ss_pred HHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhccc
Confidence 2110 00000122222222 456666 444 66667777777777776664
Q ss_pred cccccc--ccCCcceeeccCcccccccchhhhcCCCCCcEEECCCCc-cccccccCCCCCcccceeeccCCCCCCCCchh
Q 047190 382 ISKSIG--QLSKLELLLLSGNSLRGVISEALFSNLSSLDTLQLSDNS-LTLKFSHDWTPPFQLFNIFLGSCKIGPRFPKW 458 (1025)
Q Consensus 382 ~p~~l~--~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~L~~L~L~~~~l~~~~p~~ 458 (1025)
+|..++ ++++|++|++++|.+.+.+|. .++++++|++|++++|+ +++. .+|..
T Consensus 239 ip~~l~~~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~Ls~n~~l~~~-----------------------~lp~~ 294 (636)
T 4eco_A 239 KTEDLKWDNLKDLTDVEVYNCPNLTKLPT-FLKALPEMQLINVACNRGISGE-----------------------QLKDD 294 (636)
T ss_dssp TTSCCCGGGCTTCCEEEEECCTTCSSCCT-TTTTCSSCCEEECTTCTTSCHH-----------------------HHHHH
T ss_pred CchhhhhcccCCCCEEEecCCcCCccChH-HHhcCCCCCEEECcCCCCCccc-----------------------cchHH
Confidence 666666 666666666666666666664 35666666666666665 5430 34444
Q ss_pred hhcC------CcccEEEccCCCCCCchhh--hhhhccccceEEEccCccCCCCCCCccccccCCCCeeecccCcCccCCC
Q 047190 459 LQSQ------NQTVALDVSNAGISDIVPD--WFWDLTNQLYYLNLSNNEMKGKLPDLSRKFDSYGPGIDVSSNQFDGPIP 530 (1025)
Q Consensus 459 l~~~------~~L~~L~Ls~n~i~~~~~~--~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~l~~~~~l~ls~n~l~g~~p 530 (1025)
+..+ ++|+.|++++|.++ .+|. .+..+. +|++|++++|+++|.+|.+
T Consensus 295 ~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~-~L~~L~L~~N~l~g~ip~~----------------------- 349 (636)
T 4eco_A 295 WQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMK-KLGMLECLYNQLEGKLPAF----------------------- 349 (636)
T ss_dssp HHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCT-TCCEEECCSCCCEEECCCC-----------------------
T ss_pred HHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCC-CCCEEeCcCCcCccchhhh-----------------------
Confidence 4443 67777777777777 4454 555443 5666666666655444311
Q ss_pred CCCCCCceeeccCCcccccccccccccCCcccEEEccCccccccCCCcccCCCC-CCEEEcCCCcccccCCccccccc--
Q 047190 531 LLPPNVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNLLSGRLPDCWFQFDS-LAILNLANNSFFGEIPDSMSFLR-- 607 (1025)
Q Consensus 531 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~-L~~L~Ls~N~l~~~~p~~~~~l~-- 607 (1025)
..+++|++|++++|.++ .+|..+..+++ |++|++++|.++ .+|..+..+.
T Consensus 350 -------------------------~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~ 402 (636)
T 4eco_A 350 -------------------------GSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVS 402 (636)
T ss_dssp -------------------------EEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSS
T ss_pred -------------------------CCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccC
Confidence 12366888999999888 78888888888 999999999988 7788777655
Q ss_pred CCCEEEcccCcccccCCcccc-------CCCCccEEeCCCCcCccccChhhhhcCCCCcEEEeecCcCcccCcccc-ccc
Q 047190 608 SIGSLSLYNNSLSGGLPSFFM-------NGSQLTLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQL-CYL 679 (1025)
Q Consensus 608 ~L~~L~L~~N~l~~~~p~~~~-------~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l-~~l 679 (1025)
+|++|++++|++++..|..+. .+++|++|++++|+++ .+|..++..+++|++|+|++|+++ .+|..+ ...
T Consensus 403 ~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~ 480 (636)
T 4eco_A 403 VMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDE 480 (636)
T ss_dssp CEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEET
T ss_pred ccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccc
Confidence 899999999999998888888 7889999999999998 788888767899999999999999 555443 333
Q ss_pred -------CcccEEEccccccccccCcccc--CccccccccccCcccccccccccccccccceeEeecccCCccceeeccc
Q 047190 680 -------SHIQILDLSLNNISGIIPKCFH--NFTAMTKEKSSNLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSIL 750 (1025)
Q Consensus 680 -------~~L~~L~Ls~N~l~~~~p~~~~--~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 750 (1025)
++|+.|+|++|+++ .+|..+. .+++|
T Consensus 481 ~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L-------------------------------------------- 515 (636)
T 4eco_A 481 NENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYL-------------------------------------------- 515 (636)
T ss_dssp TEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTC--------------------------------------------
T ss_pred cccccccCCccEEECcCCcCC-ccChhhhhccCCCc--------------------------------------------
Confidence 38999999999999 6777765 66655
Q ss_pred cceeEEEcccCCCCCcChhhHhhcccCCeEec------cCccccccCCCCCCCCCCccEEeCCCCcCCCcCcccccCCCC
Q 047190 751 GLIKIIDLSSNKLGGKVLEEIMDLVGLVALNL------SNNNLTGQITPRIGQLKSLDFLDLSRNHFFGGIPSSLSRLRL 824 (1025)
Q Consensus 751 ~~l~~LdLs~N~l~~~ip~~~~~l~~L~~L~L------s~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~ 824 (1025)
+.|||++|++++ +|..+.++++|+.|+| ++|++.+.+|..++.+++|++|||++|++ +.+|..+. ++
T Consensus 516 ---~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~ 588 (636)
T 4eco_A 516 ---VGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PN 588 (636)
T ss_dssp ---CEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TT
T ss_pred ---CEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--Cc
Confidence 889999999998 8999999999999999 56889999999999999999999999999 78898876 79
Q ss_pred CCEEECcCCccccc
Q 047190 825 LSVMDLSYNNFSGK 838 (1025)
Q Consensus 825 L~~Ldls~N~l~g~ 838 (1025)
|+.||+++|++...
T Consensus 589 L~~L~Ls~N~l~~~ 602 (636)
T 4eco_A 589 ISVLDIKDNPNISI 602 (636)
T ss_dssp CCEEECCSCTTCEE
T ss_pred CCEEECcCCCCccc
Confidence 99999999988653
No 20
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=4.6e-43 Score=418.69 Aligned_cols=455 Identities=19% Similarity=0.220 Sum_probs=326.6
Q ss_pred cEEEcCCCCCCCCchhhhhCCCCCcEEEccCCCCCCcc-hhhcCCCCccEEEeecCCCCCcchHHhhhcCCCCCCCCCCc
Q 047190 268 DHIDLGSNQLHGSIPLAFGHMASLRHLDLLSNQLREVP-KFLGNMSSLKRLVFSYNELRGELSEFIQNVSSGSTKNSSLE 346 (1025)
Q Consensus 268 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~~L~ 346 (1025)
+++++++|.++ .+|..+. ++|++|++++|.+++++ ..+.++++|++|++++|.+++..|..+..++ +|+
T Consensus 3 ~~l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-------~L~ 72 (520)
T 2z7x_B 3 FLVDRSKNGLI-HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQ-------ELE 72 (520)
T ss_dssp CEEECTTSCCS-SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCT-------TCC
T ss_pred ceEecCCCCcc-ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhccc-------CCC
Confidence 46777777777 3555444 67777777777777743 5677777777777777777777777777666 777
Q ss_pred EEEccccccccccCCCCCCCCCcEEEeecccccC-cccccccccCCcceeeccCcccccccchhhhcCCCCC--cEEECC
Q 047190 347 WLYLAFNEITGTIPDLGGFPSLQILSLENNRLTG-TISKSIGQLSKLELLLLSGNSLRGVISEALFSNLSSL--DTLQLS 423 (1025)
Q Consensus 347 ~L~L~~n~l~~~~p~l~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L--~~L~Ls 423 (1025)
+|+|++|+++ .+|.. .+++|++|++++|++++ .+|..++.+++|++|++++|.+.+. .+..+++| ++|+++
T Consensus 73 ~L~Ls~N~l~-~lp~~-~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~----~~~~l~~L~L~~L~l~ 146 (520)
T 2z7x_B 73 YLDLSHNKLV-KISCH-PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKS----SVLPIAHLNISKVLLV 146 (520)
T ss_dssp EEECCSSCCC-EEECC-CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGG----GGGGGTTSCEEEEEEE
T ss_pred EEecCCCcee-ecCcc-ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccchh----hccccccceeeEEEee
Confidence 7777777777 34444 67777777777777765 3566777777777777777776541 24555555 555555
Q ss_pred CCccccccccCCCCCcccceeeccCCCCCCCCchhhhcCCcccEEEccCCCCCCchhhhhhhccccceEEEccCccCCCC
Q 047190 424 DNSLTLKFSHDWTPPFQLFNIFLGSCKIGPRFPKWLQSQNQTVALDVSNAGISDIVPDWFWDLTNQLYYLNLSNNEMKGK 503 (1025)
Q Consensus 424 ~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~~~p~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ 503 (1025)
+|.+.+ .+..|..+..+. .+...+++++|.+.+.
T Consensus 147 ~n~l~~----------------------~~~~~~~l~~l~------------------------~~~l~l~l~~n~~~~~ 180 (520)
T 2z7x_B 147 LGETYG----------------------EKEDPEGLQDFN------------------------TESLHIVFPTNKEFHF 180 (520)
T ss_dssp ECTTTT----------------------SSCCTTTTTTCC------------------------EEEEEEECCSSSCCCC
T ss_pred cccccc----------------------cccccccccccc------------------------cceEEEEeccCcchhh
Confidence 555410 122233333222 1222334444444433
Q ss_pred CCCccccccCCCCeeecccCcCccCCCCCCCCCceeeccCCc-------ccccccccccccCCcccEEEccCccccccCC
Q 047190 504 LPDLSRKFDSYGPGIDVSSNQFDGPIPLLPPNVSSLNLSKNK-------FSGSISFLCSISSHLLTYLDLSNNLLSGRLP 576 (1025)
Q Consensus 504 ~p~~~~~~l~~~~~l~ls~n~l~g~~p~~~~~L~~L~l~~n~-------l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p 576 (1025)
++.... ..+++|+.|++++|. +.+.++.. ..+++|+.|++++|.+++..+
T Consensus 181 ~~~~~~---------------------~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l--~~l~~L~~L~l~~~~l~~~~~ 237 (520)
T 2z7x_B 181 ILDVSV---------------------KTVANLELSNIKCVLEDNKCSYFLSILAKL--QTNPKLSNLTLNNIETTWNSF 237 (520)
T ss_dssp CCCCCC---------------------TTCSEEEECCEEECCSTTTTHHHHHHHHGG--GGCTTCCEEEEEEEEEEHHHH
T ss_pred hhhhhh---------------------hcccceeeccccccccccccceeecchhhh--ccccchhhccccccccCHHHH
Confidence 322110 012344555555544 33333322 235778899999888876533
Q ss_pred Cccc---CCCCCCEEEcCCCcccccCCccc-----ccccCCCEEEcccCcccccCC-ccccCC---CCccEEeCCCCcCc
Q 047190 577 DCWF---QFDSLAILNLANNSFFGEIPDSM-----SFLRSIGSLSLYNNSLSGGLP-SFFMNG---SQLTLMDLGKNGLS 644 (1025)
Q Consensus 577 ~~~~---~l~~L~~L~Ls~N~l~~~~p~~~-----~~l~~L~~L~L~~N~l~~~~p-~~~~~l---~~L~~L~Ls~N~l~ 644 (1025)
..+. ..++|++|++++|+++|.+|..+ ..+++|+.+++++|.+ .+| ..+..+ .+|+.|++++|++.
T Consensus 238 ~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~ 315 (520)
T 2z7x_B 238 IRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMV 315 (520)
T ss_dssp HHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCC
T ss_pred HHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCccc
Confidence 2221 24689999999999999999988 8999999999999999 455 445444 67999999999987
Q ss_pred cccChhhhhcCCCCcEEEeecCcCcccCcccccccCcccEEEcccccccc--ccCccccCccccccccccCccccccccc
Q 047190 645 GEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISG--IIPKCFHNFTAMTKEKSSNLSIISNYYY 722 (1025)
Q Consensus 645 g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~l~~~~~~~~~~~~~~~~ 722 (1025)
+ ++. ...+++|++|++++|++++.+|..+..+++|++|++++|++++ .+|..++.+++|
T Consensus 316 ~-~~~--~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L---------------- 376 (520)
T 2z7x_B 316 H-MLC--PSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSL---------------- 376 (520)
T ss_dssp C-CCC--CSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTC----------------
T ss_pred c-ccc--hhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCC----------------
Confidence 3 331 1268999999999999999999999999999999999999997 556667766665
Q ss_pred ccccccccceeEeecccCCccceeeccccceeEEEcccCCCCCcChhh-HhhcccCCeEeccCccccccCCCCCCCCCCc
Q 047190 723 NLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEE-IMDLVGLVALNLSNNNLTGQITPRIGQLKSL 801 (1025)
Q Consensus 723 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~~~ip~~-~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L 801 (1025)
+.|||++|++++.+|.. +..++.|++|+|++|++++.+|..+. ++|
T Consensus 377 -------------------------------~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L 423 (520)
T 2z7x_B 377 -------------------------------QQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRI 423 (520)
T ss_dssp -------------------------------CEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTC
T ss_pred -------------------------------CEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccC
Confidence 88999999999977765 88899999999999999999988776 799
Q ss_pred cEEeCCCCcCCCcCcccccCCCCCCEEECcCCcccccCCCC--CCCCCcCCCCcCCCCCCCCCC
Q 047190 802 DFLDLSRNHFFGGIPSSLSRLRLLSVMDLSYNNFSGKIPKG--TQLQRFGASTYAGNPELCGLP 863 (1025)
Q Consensus 802 ~~LdLs~N~l~g~ip~~l~~l~~L~~Ldls~N~l~g~ip~~--~~~~~~~~~~~~gN~~lcg~~ 863 (1025)
+.|||++|+++ .+|..+..+++|++||+++|+++ .+|.. ..+..+....+.|||+.|.|+
T Consensus 424 ~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 485 (520)
T 2z7x_B 424 KVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 485 (520)
T ss_dssp CEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcccEEECcCCCCcccCC
Confidence 99999999999 78888889999999999999999 46764 334455555689999999764
No 21
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.5e-42 Score=427.97 Aligned_cols=353 Identities=20% Similarity=0.267 Sum_probs=232.4
Q ss_pred cccccccCC-CCCCCCCcEEEeecccccC-----------------ccccccc--ccCCcceeeccCcccccccchhhhc
Q 047190 353 NEITGTIPD-LGGFPSLQILSLENNRLTG-----------------TISKSIG--QLSKLELLLLSGNSLRGVISEALFS 412 (1025)
Q Consensus 353 n~l~~~~p~-l~~l~~L~~L~L~~n~l~~-----------------~~p~~l~--~l~~L~~L~L~~N~l~~~~~~~~~~ 412 (1025)
|.+++ +|. ++++++|++|+|++|++++ .+|..++ ++++|++|+|++|.+.+.+|. .+.
T Consensus 435 N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~-~l~ 512 (876)
T 4ecn_A 435 NRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPD-FLY 512 (876)
T ss_dssp CEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCG-GGG
T ss_pred Ccccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChH-HHh
Confidence 66666 443 6667777777777777766 2666666 777777777777777766664 367
Q ss_pred CCCCCcEEECCCCc-ccc-ccccCCC-------CCcccceeeccCCCCCCCCch--hhhcCCcccEEEccCCCCCCchhh
Q 047190 413 NLSSLDTLQLSDNS-LTL-KFSHDWT-------PPFQLFNIFLGSCKIGPRFPK--WLQSQNQTVALDVSNAGISDIVPD 481 (1025)
Q Consensus 413 ~l~~L~~L~Ls~n~-l~~-~~~~~~~-------~~~~L~~L~L~~~~l~~~~p~--~l~~~~~L~~L~Ls~n~i~~~~~~ 481 (1025)
++++|++|++++|+ +++ ..+..+. .+++|+.|++++|.+. .+|. .+..+++|+.|++++|.+. .+|
T Consensus 513 ~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp- 589 (876)
T 4ecn_A 513 DLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE- 589 (876)
T ss_dssp GCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-
T ss_pred CCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-
Confidence 77777777777776 665 4444333 3347888888888887 7777 8999999999999999887 434
Q ss_pred hhhhccccceEEEccCccCCCCCCCccccccCCCCeeecccCcCccCCCCCCCCCceeeccCCcccccccccccccCCcc
Q 047190 482 WFWDLTNQLYYLNLSNNEMKGKLPDLSRKFDSYGPGIDVSSNQFDGPIPLLPPNVSSLNLSKNKFSGSISFLCSISSHLL 561 (1025)
Q Consensus 482 ~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~l~~~~~l~ls~n~l~g~~p~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L 561 (1025)
.+..+ ++|
T Consensus 590 ~~~~L------------------------------------------------------------------------~~L 597 (876)
T 4ecn_A 590 AFGTN------------------------------------------------------------------------VKL 597 (876)
T ss_dssp CCCTT------------------------------------------------------------------------SEE
T ss_pred hhcCC------------------------------------------------------------------------Ccc
Confidence 33222 334
Q ss_pred cEEEccCccccccCCCcccCCCC-CCEEEcCCCcccccCCcccccccC--CCEEEcccCcccccCCccc---c--CCCCc
Q 047190 562 TYLDLSNNLLSGRLPDCWFQFDS-LAILNLANNSFFGEIPDSMSFLRS--IGSLSLYNNSLSGGLPSFF---M--NGSQL 633 (1025)
Q Consensus 562 ~~L~Ls~N~l~~~~p~~~~~l~~-L~~L~Ls~N~l~~~~p~~~~~l~~--L~~L~L~~N~l~~~~p~~~---~--~l~~L 633 (1025)
+.|++++|.++ .+|..+.++++ |+.|+|++|.++ .+|..+..+.. |+.|++++|++++.+|... . .+++|
T Consensus 598 ~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L 675 (876)
T 4ecn_A 598 TDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINA 675 (876)
T ss_dssp SEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCE
T ss_pred eEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCc
Confidence 55555555555 45555555555 555555555555 44554444432 5555555555555444221 1 23466
Q ss_pred cEEeCCCCcCccccChhhhhcCCCCcEEEeecCcCcccCcccccc--------cCcccEEEccccccccccCcccc--Cc
Q 047190 634 TLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCY--------LSHIQILDLSLNNISGIIPKCFH--NF 703 (1025)
Q Consensus 634 ~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~--------l~~L~~L~Ls~N~l~~~~p~~~~--~l 703 (1025)
+.|+|++|+++ .+|..++..+++|++|+|++|+++ .+|..+.. +++|+.|+|++|+++ .+|..+. .+
T Consensus 676 ~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l 752 (876)
T 4ecn_A 676 STVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTL 752 (876)
T ss_dssp EEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTC
T ss_pred CEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccC
Confidence 67777777766 666666555667777777777666 44443332 236777777777777 5665554 44
Q ss_pred cccccccccCcccccccccccccccccceeEeecccCCccceeeccccceeEEEcccCCCCCcChhhHhhcccCCeEecc
Q 047190 704 TAMTKEKSSNLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLS 783 (1025)
Q Consensus 704 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls 783 (1025)
++| +.|||++|++++ +|..+.++++|+.|+|+
T Consensus 753 ~~L-----------------------------------------------~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls 784 (876)
T 4ecn_A 753 PYL-----------------------------------------------SNMDVSYNCFSS-FPTQPLNSSQLKAFGIR 784 (876)
T ss_dssp TTC-----------------------------------------------CEEECCSSCCSS-CCCGGGGCTTCCEEECC
T ss_pred CCc-----------------------------------------------CEEEeCCCCCCc-cchhhhcCCCCCEEECC
Confidence 444 667777777776 67777777777777776
Q ss_pred C------ccccccCCCCCCCCCCccEEeCCCCcCCCcCcccccCCCCCCEEECcCCccccc
Q 047190 784 N------NNLTGQITPRIGQLKSLDFLDLSRNHFFGGIPSSLSRLRLLSVMDLSYNNFSGK 838 (1025)
Q Consensus 784 ~------N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~Ldls~N~l~g~ 838 (1025)
+ |++.+.+|..++.+++|+.|+|++|++ +.+|..+. ++|+.||+++|++...
T Consensus 785 ~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i 842 (876)
T 4ecn_A 785 HQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISI 842 (876)
T ss_dssp CCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEE
T ss_pred CCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCcc
Confidence 5 778888888888888888888888888 77888766 5888888888887644
No 22
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=7.3e-41 Score=410.38 Aligned_cols=509 Identities=19% Similarity=0.192 Sum_probs=351.0
Q ss_pred ccEEEcCCCCCCCCchhhhhCCCCCcEEEccCCCCCCcc-hhhcCCCCccEEEeecCCCCCcchHHhhhcCCCCCCCCCC
Q 047190 267 VDHIDLGSNQLHGSIPLAFGHMASLRHLDLLSNQLREVP-KFLGNMSSLKRLVFSYNELRGELSEFIQNVSSGSTKNSSL 345 (1025)
Q Consensus 267 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~~L 345 (1025)
+++|+|++|.|++..+.+|.++++|++|+|++|+++++| ..|.++++|++|+|++|++++..+..|.+++ +|
T Consensus 54 ~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~-------~L 126 (635)
T 4g8a_A 54 TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLS-------SL 126 (635)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCT-------TC
T ss_pred CCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCC-------CC
Confidence 666777777776666666777777777777777777754 4567777777777777777766666666666 77
Q ss_pred cEEEccccccccccCC-CCCCCCCcEEEeecccccC-cccccccccCCcceeeccCcccccccchhhhcCCCC----CcE
Q 047190 346 EWLYLAFNEITGTIPD-LGGFPSLQILSLENNRLTG-TISKSIGQLSKLELLLLSGNSLRGVISEALFSNLSS----LDT 419 (1025)
Q Consensus 346 ~~L~L~~n~l~~~~p~-l~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~----L~~ 419 (1025)
++|+|++|++++..+. |+++++|++|++++|.+++ ..|..++.+++|++|++++|.+++..+.. +..+.+ ...
T Consensus 127 ~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~-l~~L~~l~~~~~~ 205 (635)
T 4g8a_A 127 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD-LRVLHQMPLLNLS 205 (635)
T ss_dssp CEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGG-GHHHHTCTTCCCE
T ss_pred CEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccccccc-ccchhhhhhhhhh
Confidence 7777777777755443 6777777777777777764 34666677777777777777777554432 433332 235
Q ss_pred EECCCCccccccccCCCCCcccceeeccCCCCCC-CCchhhhcCCcccEEEccCCC------CCCchhhhhhhccccceE
Q 047190 420 LQLSDNSLTLKFSHDWTPPFQLFNIFLGSCKIGP-RFPKWLQSQNQTVALDVSNAG------ISDIVPDWFWDLTNQLYY 492 (1025)
Q Consensus 420 L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~-~~p~~l~~~~~L~~L~Ls~n~------i~~~~~~~~~~~~~~L~~ 492 (1025)
++++.|.+....+..+ ....++.+.+.++.... ..+..+..+..++...+..+. +.......+.... .+..
T Consensus 206 ~~ls~n~l~~i~~~~~-~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~-~l~~ 283 (635)
T 4g8a_A 206 LDLSLNPMNFIQPGAF-KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLC-NLTI 283 (635)
T ss_dssp EECTTCCCCEECTTTT-TTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGG-GSEE
T ss_pred hhcccCcccccCcccc-cchhhhhhhhhcccccccccchhhcCCccccccccccccccccccccccccccccccc-chhh
Confidence 6677776654433322 22233444444443321 122334444444443332111 1111111221111 2333
Q ss_pred EEccCccCCCCCCCccccccCCCCeeecccCcCccC--CCCCCCCCceeeccCCcccccccccccccCCcccEEEccCcc
Q 047190 493 LNLSNNEMKGKLPDLSRKFDSYGPGIDVSSNQFDGP--IPLLPPNVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNL 570 (1025)
Q Consensus 493 L~Ls~N~l~~~~p~~~~~~l~~~~~l~ls~n~l~g~--~p~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~N~ 570 (1025)
.++..+.... ...+. ......+++.+++.++.+....... ....|+.|++.+|.
T Consensus 284 ~~l~~~~~~~---------------------~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~---~~~~L~~L~l~~~~ 339 (635)
T 4g8a_A 284 EEFRLAYLDY---------------------YLDGIIDLFNCLTNVSSFSLVSVTIERVKDFS---YNFGWQHLELVNCK 339 (635)
T ss_dssp EEEEEECCCS---------------------CEEECTTTTGGGTTCSEEEEESCEEEECGGGG---SCCCCSEEEEESCE
T ss_pred hhhhhhhhcc---------------------cccchhhhhhhhcccccccccccccccccccc---cchhhhhhhccccc
Confidence 3322222110 00111 1112457778888888776544322 23678999999999
Q ss_pred ccccCCCcccCCCCCCEEEcCCCcccccCCcccccccCCCEEEcccCccc--ccCCccccCCCCccEEeCCCCcCccccC
Q 047190 571 LSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLS--GGLPSFFMNGSQLTLMDLGKNGLSGEIP 648 (1025)
Q Consensus 571 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~--~~~p~~~~~l~~L~~L~Ls~N~l~g~ip 648 (1025)
+.+..+. .+..|+.+++.+|.+.... ....+++|+.|++++|.+. +..+..+..+.+|+.|+++.|.+. .++
T Consensus 340 ~~~~~~~---~l~~L~~l~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~-~~~ 413 (635)
T 4g8a_A 340 FGQFPTL---KLKSLKRLTFTSNKGGNAF--SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVI-TMS 413 (635)
T ss_dssp ESSCCCC---BCTTCCEEEEESCCSCCBC--CCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEE-EEC
T ss_pred ccCcCcc---cchhhhhcccccccCCCCc--ccccccccccchhhccccccccccccchhhhhhhhhhhccccccc-ccc
Confidence 8865443 4678889999998876543 3456899999999999885 345667788899999999999987 455
Q ss_pred hhhhhcCCCCcEEEeecCcCcccCc-ccccccCcccEEEccccccccccCccccCccccccccccCcccccccccccccc
Q 047190 649 TWIGESLPNLVVLSLRSNKFHGNIP-FQLCYLSHIQILDLSLNNISGIIPKCFHNFTAMTKEKSSNLSIISNYYYNLGLR 727 (1025)
Q Consensus 649 ~~~~~~l~~L~~L~L~~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 727 (1025)
..+. .+++|+.+++.+|......+ ..+..+++++.+++++|.+.+..|..+..++.+
T Consensus 414 ~~~~-~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L--------------------- 471 (635)
T 4g8a_A 414 SNFL-GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL--------------------- 471 (635)
T ss_dssp SCCT-TCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTC---------------------
T ss_pred cccc-ccccccchhhhhccccccccccccccccccccccccccccccccccccccchhh---------------------
Confidence 5555 68999999999888776654 467889999999999999998888777766665
Q ss_pred cccceeEeecccCCccceeeccccceeEEEcccCCC-CCcChhhHhhcccCCeEeccCccccccCCCCCCCCCCccEEeC
Q 047190 728 GMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKL-GGKVLEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDL 806 (1025)
Q Consensus 728 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l-~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdL 806 (1025)
+.|+|++|++ .+.+|..+..+++|++|+|++|+|++.+|..|+++++|++|+|
T Consensus 472 --------------------------~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~L 525 (635)
T 4g8a_A 472 --------------------------EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 525 (635)
T ss_dssp --------------------------CEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred --------------------------hhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEEC
Confidence 8899999985 4567889999999999999999999999999999999999999
Q ss_pred CCCcCCCcCcccccCCCCCCEEECcCCcccccCCCCC-CC-CCcCCCCcCCCCCCCCCC
Q 047190 807 SRNHFFGGIPSSLSRLRLLSVMDLSYNNFSGKIPKGT-QL-QRFGASTYAGNPELCGLP 863 (1025)
Q Consensus 807 s~N~l~g~ip~~l~~l~~L~~Ldls~N~l~g~ip~~~-~~-~~~~~~~~~gN~~lcg~~ 863 (1025)
++|+|++.+|..+..+++|++||+++|++++.+|..- .+ .++....+.||||.|+|.
T Consensus 526 s~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~ 584 (635)
T 4g8a_A 526 SHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 584 (635)
T ss_dssp TTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGG
T ss_pred CCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCC
Confidence 9999999999999999999999999999999988752 22 344555689999999884
No 23
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=1.4e-41 Score=409.40 Aligned_cols=463 Identities=20% Similarity=0.226 Sum_probs=304.9
Q ss_pred CCEEEcCCCCCCCCCCCcccccccCCcccEEEccCCCCCCCCchhhhhcCCCCccEEEcCCCCCCCCchhhhhCCCCCcE
Q 047190 214 LTNLYLGYCDLPPISTPSLLHINYSKSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLHGSIPLAFGHMASLRH 293 (1025)
Q Consensus 214 L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 293 (1025)
.+++++++|.+++++.. . .++|++|++++|.+++..+..+..++. |++|++++|.+++..|.+|+++++|++
T Consensus 33 ~~~l~ls~~~L~~ip~~---~---~~~L~~L~Ls~N~i~~~~~~~~~~l~~--L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 104 (562)
T 3a79_B 33 ESMVDYSNRNLTHVPKD---L---PPRTKALSLSQNSISELRMPDISFLSE--LRVLRLSHNRIRSLDFHVFLFNQDLEY 104 (562)
T ss_dssp CCEEECTTSCCCSCCTT---S---CTTCCEEECCSSCCCCCCGGGTTTCTT--CCEEECCSCCCCEECTTTTTTCTTCCE
T ss_pred CcEEEcCCCCCccCCCC---C---CCCcCEEECCCCCccccChhhhccCCC--ccEEECCCCCCCcCCHHHhCCCCCCCE
Confidence 35666666666654432 1 167888888888888776777888888 888888888888877888888888889
Q ss_pred EEccCCCCCCcchhhcCCCCccEEEeecCCCCCc-chHHhhhcCCCCCCCCCCcEEEccccccccccCCCCCCCCC--cE
Q 047190 294 LDLLSNQLREVPKFLGNMSSLKRLVFSYNELRGE-LSEFIQNVSSGSTKNSSLEWLYLAFNEITGTIPDLGGFPSL--QI 370 (1025)
Q Consensus 294 L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~~~~~~~~L~~L~L~~n~l~~~~p~l~~l~~L--~~ 370 (1025)
|++++|.++.+|.. .+++|++|++++|.+.+. +|..+..++ +|++|++++|.+++ ..+..+++| ++
T Consensus 105 L~Ls~N~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~-------~L~~L~L~~n~l~~--~~~~~l~~L~L~~ 173 (562)
T 3a79_B 105 LDVSHNRLQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLT-------KLTFLGLSAAKFRQ--LDLLPVAHLHLSC 173 (562)
T ss_dssp EECTTSCCCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCT-------TCCEEEEECSBCCT--TTTGGGTTSCEEE
T ss_pred EECCCCcCCccCcc--ccccCCEEECCCCCccccCchHhhcccC-------cccEEecCCCcccc--CchhhhhhceeeE
Confidence 99988888888876 788888888888888873 457777777 88888888888875 235555555 88
Q ss_pred EEeecccc--cCcccccccccC--CcceeeccCcccccccchhhhcCCCCCcEEECCCCccccccccCCCCCcccceeec
Q 047190 371 LSLENNRL--TGTISKSIGQLS--KLELLLLSGNSLRGVISEALFSNLSSLDTLQLSDNSLTLKFSHDWTPPFQLFNIFL 446 (1025)
Q Consensus 371 L~L~~n~l--~~~~p~~l~~l~--~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L 446 (1025)
|++++|++ ++..|..+..+. .+ .+++++|.+.+.++...+..+++|+.+++++|.......
T Consensus 174 L~L~~n~l~~~~~~~~~l~~l~~~~l-~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l-------------- 238 (562)
T 3a79_B 174 ILLDLVSYHIKGGETESLQIPNTTVL-HLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRL-------------- 238 (562)
T ss_dssp EEEEESSCCCCSSSCCEEEECCEEEE-EEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHH--------------
T ss_pred EEeecccccccccCcccccccCcceE-EEEecCccchhhhhhhcccccceEEEecccccccccchH--------------
Confidence 88888888 777777777654 33 557777777766666556666777777777664210000
Q ss_pred cCCCCCCCCchhhhcCCcccEEEccCCCCCCchhhhhhhccccceEEEccCccCCCCCCCccccccCCCCeeecccCcCc
Q 047190 447 GSCKIGPRFPKWLQSQNQTVALDVSNAGISDIVPDWFWDLTNQLYYLNLSNNEMKGKLPDLSRKFDSYGPGIDVSSNQFD 526 (1025)
Q Consensus 447 ~~~~l~~~~p~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~l~~~~~l~ls~n~l~ 526 (1025)
......+..++.++.++++++.+.+.....+..
T Consensus 239 ------~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~----------------------------------------- 271 (562)
T 3a79_B 239 ------MTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQ----------------------------------------- 271 (562)
T ss_dssp ------HHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHH-----------------------------------------
T ss_pred ------HHHHHHHhccCcceEEEecCCcCcHHHHHHHHH-----------------------------------------
Confidence 001122344444444444444333221111100
Q ss_pred cCCCCCCCCCceeeccCCcccccccccccccCCcccEEEccCccccccCCCcc-----cCCCCCCEEEcCCCcccccCC-
Q 047190 527 GPIPLLPPNVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNLLSGRLPDCW-----FQFDSLAILNLANNSFFGEIP- 600 (1025)
Q Consensus 527 g~~p~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~-----~~l~~L~~L~Ls~N~l~~~~p- 600 (1025)
.. ..++|++|++++|.++|.+|..+ .+++.|+.++++.|.+ .+|
T Consensus 272 -------------------------~~---~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~ 321 (562)
T 3a79_B 272 -------------------------FF---WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSK 321 (562)
T ss_dssp -------------------------HH---TTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCH
T ss_pred -------------------------hh---hcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecCh
Confidence 00 01245555555555555555544 4444444444444444 222
Q ss_pred ccccc---ccCCCEEEcccCcccccCCccccCCCCccEEeCCCCcCccccChhhhhcCCCCcEEEeecCcCccc--Cccc
Q 047190 601 DSMSF---LRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGN--IPFQ 675 (1025)
Q Consensus 601 ~~~~~---l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~--~p~~ 675 (1025)
..+.. ..+|++|++++|.+.... ....+++|++|++++|++++.+|..+. .+++|++|+|++|++++. +|..
T Consensus 322 ~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~ 398 (562)
T 3a79_B 322 EALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCS-TLKRLQTLILQRNGLKNFFKVALM 398 (562)
T ss_dssp HHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCC-SCSSCCEEECCSSCCCBTTHHHHT
T ss_pred hhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEECCCCccccchhhhhc-ccCCCCEEECCCCCcCCcccchhh
Confidence 11111 134666666666654321 124566667777777777665666655 566777777777776652 3455
Q ss_pred ccccCcccEEEccccccccccCcc-ccCccccccccccCcccccccccccccccccceeEeecccCCccceeecccccee
Q 047190 676 LCYLSHIQILDLSLNNISGIIPKC-FHNFTAMTKEKSSNLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIK 754 (1025)
Q Consensus 676 l~~l~~L~~L~Ls~N~l~~~~p~~-~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 754 (1025)
+..+++|++|++++|++++.+|.. +..+++| +
T Consensus 399 ~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L-----------------------------------------------~ 431 (562)
T 3a79_B 399 TKNMSSLETLDVSLNSLNSHAYDRTCAWAESI-----------------------------------------------L 431 (562)
T ss_dssp TTTCTTCCEEECTTSCCBSCCSSCCCCCCTTC-----------------------------------------------C
T ss_pred hcCCCCCCEEECCCCcCCCccChhhhcCcccC-----------------------------------------------C
Confidence 677777777777777777645432 4443333 6
Q ss_pred EEEcccCCCCCcChhhHhhcccCCeEeccCccccccCCCCCCCCCCccEEeCCCCcCCCcCccc-ccCCCCCCEEECcCC
Q 047190 755 IIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSRNHFFGGIPSS-LSRLRLLSVMDLSYN 833 (1025)
Q Consensus 755 ~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~-l~~l~~L~~Ldls~N 833 (1025)
.|+|++|++++.+|..+. ++|+.|+|++|+++ .+|..+..+++|++|||++|++++ +|.. +..+++|+.|++++|
T Consensus 432 ~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N 507 (562)
T 3a79_B 432 VLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKS-VPDGVFDRLTSLQYIWLHDN 507 (562)
T ss_dssp EEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCC-CCTTSTTTCTTCCCEECCSC
T ss_pred EEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCC-CCHHHHhcCCCCCEEEecCC
Confidence 777777777776665544 68999999999998 678778899999999999999995 5555 899999999999999
Q ss_pred cccccCCC
Q 047190 834 NFSGKIPK 841 (1025)
Q Consensus 834 ~l~g~ip~ 841 (1025)
++.|.+|.
T Consensus 508 ~~~c~c~~ 515 (562)
T 3a79_B 508 PWDCTCPG 515 (562)
T ss_dssp CBCCCHHH
T ss_pred CcCCCcch
Confidence 99998774
No 24
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=8.3e-40 Score=393.86 Aligned_cols=249 Identities=19% Similarity=0.275 Sum_probs=198.4
Q ss_pred CCcccEEEccCcccccc----CCCcccCCCCCCEEEcCCCcccccCCccc-----ccccCCCEEEcccCcccccCC-ccc
Q 047190 558 SHLLTYLDLSNNLLSGR----LPDCWFQFDSLAILNLANNSFFGEIPDSM-----SFLRSIGSLSLYNNSLSGGLP-SFF 627 (1025)
Q Consensus 558 ~~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~-----~~l~~L~~L~L~~N~l~~~~p-~~~ 627 (1025)
.+.|+.|+++++.+.+. ++..+ ..++|++|++++|.++|.+|..+ ..++.|+.++++.|.+ .+| ..+
T Consensus 248 l~~L~~L~L~~~~l~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~ 324 (562)
T 3a79_B 248 GPTLLNVTLQHIETTWKCSVKLFQFF-WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEAL 324 (562)
T ss_dssp CSSCEEEEEEEEEECHHHHHHHHHHH-TTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHH
T ss_pred cCcceEEEecCCcCcHHHHHHHHHhh-hcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhh
Confidence 35566777766665543 12222 24589999999999999999887 7777788888888877 344 222
Q ss_pred cC---CCCccEEeCCCCcCccccChhhhhcCCCCcEEEeecCcCcccCcccccccCcccEEEccccccccc--cCccccC
Q 047190 628 MN---GSQLTLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGI--IPKCFHN 702 (1025)
Q Consensus 628 ~~---l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~--~p~~~~~ 702 (1025)
.. ..+|+.|++++|.+. .++ +...+++|++|++++|++++.+|..+..+++|+.|+|++|++++. +|..++.
T Consensus 325 ~~~~~~~~L~~L~l~~n~~~-~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~ 401 (562)
T 3a79_B 325 YSVFAEMNIKMLSISDTPFI-HMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKN 401 (562)
T ss_dssp HHHHHTCCCSEEEEESSCCC-CCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTT
T ss_pred hhhhccCcceEEEccCCCcc-ccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcC
Confidence 22 367999999999987 332 112689999999999999999999999999999999999999973 3456666
Q ss_pred ccccccccccCcccccccccccccccccceeEeecccCCccceeeccccceeEEEcccCCCCCcChh-hHhhcccCCeEe
Q 047190 703 FTAMTKEKSSNLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLE-EIMDLVGLVALN 781 (1025)
Q Consensus 703 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~~~ip~-~~~~l~~L~~L~ 781 (1025)
+++| +.|||++|++++.+|. .+..+++|++|+
T Consensus 402 l~~L-----------------------------------------------~~L~l~~N~l~~~~~~~~~~~l~~L~~L~ 434 (562)
T 3a79_B 402 MSSL-----------------------------------------------ETLDVSLNSLNSHAYDRTCAWAESILVLN 434 (562)
T ss_dssp CTTC-----------------------------------------------CEEECTTSCCBSCCSSCCCCCCTTCCEEE
T ss_pred CCCC-----------------------------------------------CEEECCCCcCCCccChhhhcCcccCCEEE
Confidence 6655 8899999999996665 488999999999
Q ss_pred ccCccccccCCCCCCCCCCccEEeCCCCcCCCcCcccccCCCCCCEEECcCCcccccCCCC--CCCCCcCCCCcCCCCCC
Q 047190 782 LSNNNLTGQITPRIGQLKSLDFLDLSRNHFFGGIPSSLSRLRLLSVMDLSYNNFSGKIPKG--TQLQRFGASTYAGNPEL 859 (1025)
Q Consensus 782 Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~Ldls~N~l~g~ip~~--~~~~~~~~~~~~gN~~l 859 (1025)
|++|++++.+|..+. ++|++|||++|+++ .+|..+..+++|++||+++|+++ .+|.. ..+..+....+.|||+.
T Consensus 435 l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~ 510 (562)
T 3a79_B 435 LSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWD 510 (562)
T ss_dssp CCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCCBC
T ss_pred CCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCCcC
Confidence 999999999988776 79999999999999 68888889999999999999999 56764 34455555668999999
Q ss_pred CCCC
Q 047190 860 CGLP 863 (1025)
Q Consensus 860 cg~~ 863 (1025)
|+|+
T Consensus 511 c~c~ 514 (562)
T 3a79_B 511 CTCP 514 (562)
T ss_dssp CCHH
T ss_pred CCcc
Confidence 9764
No 25
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=3.3e-39 Score=375.39 Aligned_cols=246 Identities=23% Similarity=0.254 Sum_probs=133.1
Q ss_pred ccCcCCCCCcEEEccCCCCCCCCCcccccCcccccccccccccCCCCcchhccCCCCCCEEecccCCCCCCCCchhcccC
Q 047190 106 PSLLKLQHLTYLDLSWNNFSGSPIPEFIGSLGKLSELALSSAQFAGPIPHQLGNLSKLQVLDLRFNNLFSSGNLDWLSYL 185 (1025)
Q Consensus 106 ~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~Ls~n~i~~~~~~~~l~~l 185 (1025)
+.-.+.++|++|++++|.+ + .+|+.++++++|++|++++|.++|.+|..++++++|+++++++|..
T Consensus 5 p~~~~~~~L~~L~l~~n~l-~-~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~------------ 70 (454)
T 1jl5_A 5 PRNVSNTFLQEPLRHSSNL-T-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD------------ 70 (454)
T ss_dssp -------------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHH------------
T ss_pred ccccccccchhhhcccCch-h-hCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhc------------
Confidence 3444578999999999999 4 4899999999999999999999999999999999998888887742
Q ss_pred CCCCeeeccCCcCCCCcchHHhhCCCCCCCEEEcCCCCCCCCCCCcccccccCCcccEEEccCCCCCCCCchhhhhcCCC
Q 047190 186 SSLRYLDLADCKLSKFSNWVQVLSNLRSLTNLYLGYCDLPPISTPSLLHINYSKSLEVIDLSNNYLTNSIYPWLFNVSSN 265 (1025)
Q Consensus 186 ~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~~ 265 (1025)
.++++|++++|.+++++.+ .++|++|++++|.+++.+.. .++|++|++
T Consensus 71 ~~l~~L~l~~~~l~~lp~~------~~~L~~L~l~~n~l~~lp~~-------~~~L~~L~l------------------- 118 (454)
T 1jl5_A 71 RQAHELELNNLGLSSLPEL------PPHLESLVASCNSLTELPEL-------PQSLKSLLV------------------- 118 (454)
T ss_dssp HTCSEEECTTSCCSCCCSC------CTTCSEEECCSSCCSSCCCC-------CTTCCEEEC-------------------
T ss_pred cCCCEEEecCCccccCCCC------cCCCCEEEccCCcCCccccc-------cCCCcEEEC-------------------
Confidence 4677778877777765431 24555555555555543210 134444444
Q ss_pred CccEEEcCCCCCCCCchhhhhCCCCCcEEEccCCCCCCcchhhcCCCCccEEEeecCCCCCcchHHhhhcCCCCCCCCCC
Q 047190 266 LVDHIDLGSNQLHGSIPLAFGHMASLRHLDLLSNQLREVPKFLGNMSSLKRLVFSYNELRGELSEFIQNVSSGSTKNSSL 345 (1025)
Q Consensus 266 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~~L 345 (1025)
++|.+++. +. ..++|++|++++|+++++| .++++++|++|++++|.+++ +|..+ . +|
T Consensus 119 -------~~n~l~~l-~~---~~~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~-------~L 175 (454)
T 1jl5_A 119 -------DNNNLKAL-SD---LPPLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNSLKK-LPDLP---P-------SL 175 (454)
T ss_dssp -------CSSCCSCC-CS---CCTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSC-CCCCC---T-------TC
T ss_pred -------CCCccCcc-cC---CCCCCCEEECcCCCCCCCc-ccCCCCCCCEEECCCCcCcc-cCCCc---c-------cc
Confidence 44444431 11 0145666666666666665 36666666666666666554 22211 1 66
Q ss_pred cEEEccccccccccCCCCCCCCCcEEEeecccccCcccccccccCCcceeeccCcccccccchhhhcCCCCCcEEECCCC
Q 047190 346 EWLYLAFNEITGTIPDLGGFPSLQILSLENNRLTGTISKSIGQLSKLELLLLSGNSLRGVISEALFSNLSSLDTLQLSDN 425 (1025)
Q Consensus 346 ~~L~L~~n~l~~~~p~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n 425 (1025)
++|++++|.+++ +|.++.+++|++|++++|++++ +|... ++|++|++++|.+. .+|. +..+++|++|++++|
T Consensus 176 ~~L~L~~n~l~~-l~~~~~l~~L~~L~l~~N~l~~-l~~~~---~~L~~L~l~~n~l~-~lp~--~~~l~~L~~L~l~~N 247 (454)
T 1jl5_A 176 EFIAAGNNQLEE-LPELQNLPFLTAIYADNNSLKK-LPDLP---LSLESIVAGNNILE-ELPE--LQNLPFLTTIYADNN 247 (454)
T ss_dssp CEEECCSSCCSS-CCCCTTCTTCCEEECCSSCCSS-CCCCC---TTCCEEECCSSCCS-SCCC--CTTCTTCCEEECCSS
T ss_pred cEEECcCCcCCc-CccccCCCCCCEEECCCCcCCc-CCCCc---CcccEEECcCCcCC-cccc--cCCCCCCCEEECCCC
Confidence 677777776664 4566667777777777776664 33221 35666666666665 3442 555566666666555
Q ss_pred ccc
Q 047190 426 SLT 428 (1025)
Q Consensus 426 ~l~ 428 (1025)
+++
T Consensus 248 ~l~ 250 (454)
T 1jl5_A 248 LLK 250 (454)
T ss_dssp CCS
T ss_pred cCC
Confidence 543
No 26
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=7.8e-38 Score=366.95 Aligned_cols=390 Identities=20% Similarity=0.182 Sum_probs=252.9
Q ss_pred EEEccccccccccCCCCCCCCCcEEEeecccccCcccccccccCCcceeeccCcccccccchhhhcCCCCCcEEECCCCc
Q 047190 347 WLYLAFNEITGTIPDLGGFPSLQILSLENNRLTGTISKSIGQLSKLELLLLSGNSLRGVISEALFSNLSSLDTLQLSDNS 426 (1025)
Q Consensus 347 ~L~L~~n~l~~~~p~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~ 426 (1025)
.++.+++.++ .+|. -.++|++|++++|.+++..|..+.++++|++|++++|.+.+.++...|.++++|++|++++|.
T Consensus 14 ~~~c~~~~l~-~lp~--l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~ 90 (455)
T 3v47_A 14 NAICINRGLH-QVPE--LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ 90 (455)
T ss_dssp EEECCSSCCS-SCCC--CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCT
T ss_pred ccCcCCCCcc-cCCC--CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCc
Confidence 3444444444 3333 124556666666665555555566666666666666665545544445566666666666665
Q ss_pred cccccccCCCCCcccceeeccCCCCCCCCchh--hhcCCcccEEEccCCCCCCchhhhhhhccccceEEEccCccCCCCC
Q 047190 427 LTLKFSHDWTPPFQLFNIFLGSCKIGPRFPKW--LQSQNQTVALDVSNAGISDIVPDWFWDLTNQLYYLNLSNNEMKGKL 504 (1025)
Q Consensus 427 l~~~~~~~~~~~~~L~~L~L~~~~l~~~~p~~--l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~ 504 (1025)
++...+..+..+.+|++|++++|.+.+..+.. +..+++|+.|++++|.+.+..|..+....++|++|++++|.+++..
T Consensus 91 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 170 (455)
T 3v47_A 91 FLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSIC 170 (455)
T ss_dssp TCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCC
T ss_pred cCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccC
Confidence 55444444444444444444444444322222 5555666666666666665555443222235555555555554332
Q ss_pred CCccccccCCCCeeecccCcCccCCCCCCCCCceeeccCCcccccccccccccCCcccEEEccCccccccCCCcc-----
Q 047190 505 PDLSRKFDSYGPGIDVSSNQFDGPIPLLPPNVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNLLSGRLPDCW----- 579 (1025)
Q Consensus 505 p~~~~~~l~~~~~l~ls~n~l~g~~p~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~----- 579 (1025)
|.... ......|+.|++++|.+.+..+..+
T Consensus 171 ~~~l~---------------------------------------------~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~ 205 (455)
T 3v47_A 171 EEDLL---------------------------------------------NFQGKHFTLLRLSSITLQDMNEYWLGWEKC 205 (455)
T ss_dssp TTTSG---------------------------------------------GGTTCEEEEEECTTCBCTTCSTTCTTHHHH
T ss_pred hhhhh---------------------------------------------ccccccccccccccCcccccchhhcccccc
Confidence 21100 0011346677777777665443322
Q ss_pred ---cCCCCCCEEEcCCCcccccCCcccccc---cCCCEEEcccCcccccCCccccCCCCccEEeCCCCcCccccChhhh-
Q 047190 580 ---FQFDSLAILNLANNSFFGEIPDSMSFL---RSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGKNGLSGEIPTWIG- 652 (1025)
Q Consensus 580 ---~~l~~L~~L~Ls~N~l~~~~p~~~~~l---~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~- 652 (1025)
..+++|++|++++|.+++..|..+... .+|+.|++++|.+.+... ..+.+.+..+..+.
T Consensus 206 ~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--------------~~~~~~~~~~~~~~~ 271 (455)
T 3v47_A 206 GNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSF--------------GHTNFKDPDNFTFKG 271 (455)
T ss_dssp CCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCT--------------TCCSSCCCCTTTTGG
T ss_pred ccccccceeeeEecCCCcccccchhhhhccccccceeeEeecccccccccc--------------chhhhccCccccccc
Confidence 234566666666666665555544433 555666666555443211 11122211111111
Q ss_pred hcCCCCcEEEeecCcCcccCcccccccCcccEEEccccccccccCccccCccccccccccCcccccccccccccccccce
Q 047190 653 ESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPKCFHNFTAMTKEKSSNLSIISNYYYNLGLRGMLMP 732 (1025)
Q Consensus 653 ~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 732 (1025)
-..++|++|++++|++.+..|..+..+++|++|+|++|++++..|..|+.++.|
T Consensus 272 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L-------------------------- 325 (455)
T 3v47_A 272 LEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHL-------------------------- 325 (455)
T ss_dssp GTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTC--------------------------
T ss_pred ccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccC--------------------------
Confidence 024789999999999999999999999999999999999998888888877776
Q ss_pred eEeecccCCccceeeccccceeEEEcccCCCCCcChhhHhhcccCCeEeccCccccccCCCCCCCCCCccEEeCCCCcCC
Q 047190 733 LIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSRNHFF 812 (1025)
Q Consensus 733 ~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~ 812 (1025)
+.|+|++|++++..|..+.++++|++|+|++|++++.+|..++.+++|++|||++|+++
T Consensus 326 ---------------------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 384 (455)
T 3v47_A 326 ---------------------LKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLK 384 (455)
T ss_dssp ---------------------CEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred ---------------------CEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccc
Confidence 88999999999999999999999999999999999999999999999999999999999
Q ss_pred CcCcccccCCCCCCEEECcCCcccccCCCCCCC
Q 047190 813 GGIPSSLSRLRLLSVMDLSYNNFSGKIPKGTQL 845 (1025)
Q Consensus 813 g~ip~~l~~l~~L~~Ldls~N~l~g~ip~~~~~ 845 (1025)
+..+..+..+++|+.|++++|+++|.+|....+
T Consensus 385 ~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~l 417 (455)
T 3v47_A 385 SVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYL 417 (455)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCBCCCTTTTHHH
T ss_pred cCCHhHhccCCcccEEEccCCCcccCCCcchHH
Confidence 988888899999999999999999999965433
No 27
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=8.9e-37 Score=357.96 Aligned_cols=391 Identities=21% Similarity=0.202 Sum_probs=278.2
Q ss_pred cEEEccCCCCCCCCchhhhhcCCCCccEEEcCCCCCCCCchhhhhCCCCCcEEEccCCCCCC-c-chhhcCCCCccEEEe
Q 047190 242 EVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLHGSIPLAFGHMASLRHLDLLSNQLRE-V-PKFLGNMSSLKRLVF 319 (1025)
Q Consensus 242 ~~L~Ls~n~l~~~~~~~l~~l~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~-l-p~~l~~l~~L~~L~L 319 (1025)
+.++.+++.++. +|. +. .. +++|++++|.+++..|..|+++++|++|++++|.+.+ + |..|.++++|++|++
T Consensus 13 ~~~~c~~~~l~~-lp~-l~--~~--l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~L 86 (455)
T 3v47_A 13 YNAICINRGLHQ-VPE-LP--AH--VNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKL 86 (455)
T ss_dssp TEEECCSSCCSS-CCC-CC--TT--CCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEEC
T ss_pred cccCcCCCCccc-CCC-CC--Cc--cCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeC
Confidence 456666666653 444 11 33 7777777777776667777777777777777777764 4 455677777777777
Q ss_pred ecCCCCCcchHHhhhcCCCCCCCCCCcEEEccccccccccCC---CCCCCCCcEEEeecccccCccccc-ccccCCccee
Q 047190 320 SYNELRGELSEFIQNVSSGSTKNSSLEWLYLAFNEITGTIPD---LGGFPSLQILSLENNRLTGTISKS-IGQLSKLELL 395 (1025)
Q Consensus 320 s~n~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~l~~~~p~---l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L 395 (1025)
++|.+.+..|..+..++ +|++|+|++|.+++.++. +..+++|++|++++|++++..|.. +..+++|++|
T Consensus 87 s~n~l~~~~~~~~~~l~-------~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L 159 (455)
T 3v47_A 87 DYNQFLQLETGAFNGLA-------NLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVL 159 (455)
T ss_dssp TTCTTCEECTTTTTTCT-------TCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEE
T ss_pred CCCccCccChhhccCcc-------cCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEE
Confidence 77777666666666555 677777777766653322 566666666666666666555554 5566666666
Q ss_pred eccCcccccccchhhhcCC--CCCcEEECCCCccccccccCCCCCcccceeeccCCCCCCCCchhhhcCCcccEEEccCC
Q 047190 396 LLSGNSLRGVISEALFSNL--SSLDTLQLSDNSLTLKFSHDWTPPFQLFNIFLGSCKIGPRFPKWLQSQNQTVALDVSNA 473 (1025)
Q Consensus 396 ~L~~N~l~~~~~~~~~~~l--~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~~~p~~l~~~~~L~~L~Ls~n 473 (1025)
++++|.+.+..+.. +..+ .+|+.|++++|.+.......+. ......+..+++|+.|++++|
T Consensus 160 ~L~~n~l~~~~~~~-l~~l~~~~L~~L~l~~n~l~~~~~~~~~----------------~~~~~~~~~~~~L~~L~Ls~n 222 (455)
T 3v47_A 160 DLTFNKVKSICEED-LLNFQGKHFTLLRLSSITLQDMNEYWLG----------------WEKCGNPFKNTSITTLDLSGN 222 (455)
T ss_dssp ECTTCCBSCCCTTT-SGGGTTCEEEEEECTTCBCTTCSTTCTT----------------HHHHCCTTTTCEEEEEECTTS
T ss_pred eCCCCcccccChhh-hhccccccccccccccCcccccchhhcc----------------ccccccccccceeeeEecCCC
Confidence 66666666544432 3332 4455555555544432111100 000011335678999999999
Q ss_pred CCCCchhhhhhhcc--ccceEEEccCccCCCCCCCccccccCCCCeeecccCcCccCCCCCCCCCceeeccCCccccccc
Q 047190 474 GISDIVPDWFWDLT--NQLYYLNLSNNEMKGKLPDLSRKFDSYGPGIDVSSNQFDGPIPLLPPNVSSLNLSKNKFSGSIS 551 (1025)
Q Consensus 474 ~i~~~~~~~~~~~~--~~L~~L~Ls~N~l~~~~p~~~~~~l~~~~~l~ls~n~l~g~~p~~~~~L~~L~l~~n~l~~~~~ 551 (1025)
.+.+..|..+.... .+|+.|++++|.+.+... ..+.+.+..+. .
T Consensus 223 ~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~---------------~~~~~~~~~~~-------------~------ 268 (455)
T 3v47_A 223 GFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSF---------------GHTNFKDPDNF-------------T------ 268 (455)
T ss_dssp CCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCT---------------TCCSSCCCCTT-------------T------
T ss_pred cccccchhhhhccccccceeeEeecccccccccc---------------chhhhccCccc-------------c------
Confidence 99999998887652 479999999988764321 11111111110 0
Q ss_pred ccccccCCcccEEEccCccccccCCCcccCCCCCCEEEcCCCcccccCCcccccccCCCEEEcccCcccccCCccccCCC
Q 047190 552 FLCSISSHLLTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGS 631 (1025)
Q Consensus 552 ~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~ 631 (1025)
......++|+.|++++|.+++..|..+..+++|++|++++|.+++..|..+..+++|++|++++|++++..|..|.+++
T Consensus 269 -~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 347 (455)
T 3v47_A 269 -FKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLD 347 (455)
T ss_dssp -TGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCT
T ss_pred -cccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcc
Confidence 0011236799999999999999999999999999999999999999999999999999999999999999899999999
Q ss_pred CccEEeCCCCcCccccChhhhhcCCCCcEEEeecCcCcccCcccccccCcccEEEccccccccccCc
Q 047190 632 QLTLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPK 698 (1025)
Q Consensus 632 ~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~ 698 (1025)
+|++|+|++|++++..|..+. .+++|++|+|++|++++..+..+..+++|++|+|++|++++.+|.
T Consensus 348 ~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 413 (455)
T 3v47_A 348 KLEVLDLSYNHIRALGDQSFL-GLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 413 (455)
T ss_dssp TCCEEECCSSCCCEECTTTTT-TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred cCCEEECCCCcccccChhhcc-ccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCc
Confidence 999999999999977787777 699999999999999987777889999999999999999988873
No 28
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=8.7e-38 Score=363.46 Aligned_cols=82 Identities=21% Similarity=0.147 Sum_probs=36.0
Q ss_pred CcccEEEccCCCCCCCCchhhhhcCCCCccEEEcCCCCCCCCchhhhhCCCCC-------------cEEEccCCCCCCcc
Q 047190 239 KSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLHGSIPLAFGHMASL-------------RHLDLLSNQLREVP 305 (1025)
Q Consensus 239 ~~L~~L~Ls~n~l~~~~~~~l~~l~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L-------------~~L~Ls~n~l~~lp 305 (1025)
+.|++|++++|.+ +.+|+.+++++. |++|++++|.+.|.+|..++.+++| ++|++++|+++++|
T Consensus 11 ~~L~~L~l~~n~l-~~iP~~i~~L~~--L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp 87 (454)
T 1jl5_A 11 TFLQEPLRHSSNL-TEMPVEAENVKS--KTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLP 87 (454)
T ss_dssp ------------------------CC--HHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCC
T ss_pred ccchhhhcccCch-hhCChhHhcccc--hhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccCC
Confidence 5677777777777 667777777777 7777777777777777777776655 55555555555554
Q ss_pred hhhcCCCCccEEEeecCCCCC
Q 047190 306 KFLGNMSSLKRLVFSYNELRG 326 (1025)
Q Consensus 306 ~~l~~l~~L~~L~Ls~n~l~~ 326 (1025)
.. .++|++|++++|.+++
T Consensus 88 ~~---~~~L~~L~l~~n~l~~ 105 (454)
T 1jl5_A 88 EL---PPHLESLVASCNSLTE 105 (454)
T ss_dssp SC---CTTCSEEECCSSCCSS
T ss_pred CC---cCCCCEEEccCCcCCc
Confidence 42 2445555555555444
No 29
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=2.3e-38 Score=350.71 Aligned_cols=292 Identities=30% Similarity=0.450 Sum_probs=195.5
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCc--ccceEecCCC--CcEEEEECCCCCCCCCCcccc--ccccc
Q 047190 34 SCLDEEKESLLAFKQGLIDESGILSSWGREDEKRNCCK--WRGVRCSNKT--GHVLGLDLRASSDSPVDALKG--TINPS 107 (1025)
Q Consensus 34 ~~~~~~~~~ll~~k~~~~~~~~~l~~W~~~~~~~~~c~--w~gv~C~~~~--~~v~~L~L~~~~~~~~~~l~g--~l~~~ 107 (1025)
.|.++|++||++||+++.+|. .+++|. .+.+||. |.||+|+..+ ++|+.|+|++ +.+.| .+|+.
T Consensus 2 ~c~~~~~~aL~~~k~~~~~~~-~l~~W~---~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~------~~l~~~~~~~~~ 71 (313)
T 1ogq_A 2 LCNPQDKQALLQIKKDLGNPT-TLSSWL---PTTDCCNRTWLGVLCDTDTQTYRVNNLDLSG------LNLPKPYPIPSS 71 (313)
T ss_dssp CSCHHHHHHHHHHHHHTTCCG-GGTTCC---TTSCTTTTCSTTEEECCSSSCCCEEEEEEEC------CCCSSCEECCGG
T ss_pred CCCHHHHHHHHHHHHhcCCcc-cccCCC---CCCCCCcCCCcceEeCCCCCCceEEEEECCC------CCccCCcccChh
Confidence 699999999999999998876 789997 4678998 9999998655 8999999998 67888 88889
Q ss_pred CcCCCCCcEEEccC-CCCCCCCCcccccCcccccccccccccCCCCcchhccCCCCCCEEecccCCCCCCCCchhcccCC
Q 047190 108 LLKLQHLTYLDLSW-NNFSGSPIPEFIGSLGKLSELALSSAQFAGPIPHQLGNLSKLQVLDLRFNNLFSSGNLDWLSYLS 186 (1025)
Q Consensus 108 l~~l~~L~~L~Ls~-n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~Ls~n~i~~~~~~~~l~~l~ 186 (1025)
+.++++|++|+|++ |.+.+. +|..++++++|++|+|++|++++.+|..++++++|++|++++|.+.. ..+..+..+
T Consensus 72 l~~l~~L~~L~L~~~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~-~~p~~~~~l- 148 (313)
T 1ogq_A 72 LANLPYLNFLYIGGINNLVGP-IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSG-TLPPSISSL- 148 (313)
T ss_dssp GGGCTTCSEEEEEEETTEESC-CCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEES-CCCGGGGGC-
T ss_pred HhCCCCCCeeeCCCCCccccc-CChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCC-cCChHHhcC-
Confidence 99999999999995 888875 88888889999999999998888888888888888888887776511 111112222
Q ss_pred CCCeeeccCCcCCCCcchHHhhCCCCCCCEEEcCCCCCCCCCCCcccccccCCcccEEEccCCCCCCCCchhhhhcC-CC
Q 047190 187 SLRYLDLADCKLSKFSNWVQVLSNLRSLTNLYLGYCDLPPISTPSLLHINYSKSLEVIDLSNNYLTNSIYPWLFNVS-SN 265 (1025)
Q Consensus 187 ~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~-~~ 265 (1025)
++|++|++++|.+++.+|..+..+. .
T Consensus 149 ----------------------------------------------------~~L~~L~L~~N~l~~~~p~~l~~l~~~- 175 (313)
T 1ogq_A 149 ----------------------------------------------------PNLVGITFDGNRISGAIPDSYGSFSKL- 175 (313)
T ss_dssp ----------------------------------------------------TTCCEEECCSSCCEEECCGGGGCCCTT-
T ss_pred ----------------------------------------------------CCCCeEECcCCcccCcCCHHHhhhhhc-
Confidence 3334444444444434444444444 4
Q ss_pred CccEEEcCCCCCCCCchhhhhCCCCCcEEEccCCCCCC-cchhhcCCCCccEEEeecCCCCCcchHHhhhcCCCCCCCCC
Q 047190 266 LVDHIDLGSNQLHGSIPLAFGHMASLRHLDLLSNQLRE-VPKFLGNMSSLKRLVFSYNELRGELSEFIQNVSSGSTKNSS 344 (1025)
Q Consensus 266 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~-lp~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~~ 344 (1025)
|++|++++|.+++.+|..++.++ |++|++++|.+++ .|..+..+++|++|++++
T Consensus 176 -L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~----------------------- 230 (313)
T 1ogq_A 176 -FTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAK----------------------- 230 (313)
T ss_dssp -CCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCS-----------------------
T ss_pred -CcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCC-----------------------
Confidence 66666666666666666665554 5666665555554 444445555455554444
Q ss_pred CcEEEccccccccccCCCCCCCCCcEEEeecccccCcccccccccCCcceeeccCcccccccchhhhcCCCCCcEEECCC
Q 047190 345 LEWLYLAFNEITGTIPDLGGFPSLQILSLENNRLTGTISKSIGQLSKLELLLLSGNSLRGVISEALFSNLSSLDTLQLSD 424 (1025)
Q Consensus 345 L~~L~L~~n~l~~~~p~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~ 424 (1025)
|.+++.+|.+..+++|++|++++|++++.+|..+..+++|++|++++|.+++.+|.. ..+++|+.+++++
T Consensus 231 --------N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~--~~l~~L~~l~l~~ 300 (313)
T 1ogq_A 231 --------NSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG--GNLQRFDVSAYAN 300 (313)
T ss_dssp --------SEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS--TTGGGSCGGGTCS
T ss_pred --------CceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC--ccccccChHHhcC
Confidence 444444444445555555555555555555555555566666666666665555542 4555555555555
Q ss_pred Cc
Q 047190 425 NS 426 (1025)
Q Consensus 425 n~ 426 (1025)
|+
T Consensus 301 N~ 302 (313)
T 1ogq_A 301 NK 302 (313)
T ss_dssp SS
T ss_pred CC
Confidence 54
No 30
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=1.1e-34 Score=337.67 Aligned_cols=410 Identities=22% Similarity=0.200 Sum_probs=231.5
Q ss_pred CcccccCcccccccccccccCCCCcchhccCCCCCCEEecccCCCCCCCCchhcccCCCCCeeeccCCcCCCCcchHHhh
Q 047190 129 IPEFIGSLGKLSELALSSAQFAGPIPHQLGNLSKLQVLDLRFNNLFSSGNLDWLSYLSSLRYLDLADCKLSKFSNWVQVL 208 (1025)
Q Consensus 129 ~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~Ls~n~i~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l 208 (1025)
.+..++++++|++|++++|.+++ +| .++.+++|++|++++|++... .++.+++|++|++++|.+++++ +
T Consensus 34 ~~~~~~~l~~L~~L~Ls~n~l~~-~~-~l~~l~~L~~L~Ls~n~l~~~----~~~~l~~L~~L~Ls~N~l~~~~-----~ 102 (457)
T 3bz5_A 34 DTISEEQLATLTSLDCHNSSITD-MT-GIEKLTGLTKLICTSNNITTL----DLSQNTNLTYLACDSNKLTNLD-----V 102 (457)
T ss_dssp SEEEHHHHTTCCEEECCSSCCCC-CT-TGGGCTTCSEEECCSSCCSCC----CCTTCTTCSEEECCSSCCSCCC-----C
T ss_pred cccChhHcCCCCEEEccCCCccc-Ch-hhcccCCCCEEEccCCcCCeE----ccccCCCCCEEECcCCCCceee-----c
Confidence 44566667777777777777765 34 466777777777777765332 1556666666666666666542 4
Q ss_pred CCCCCCCEEEcCCCCCCCCCCCcccccccCCcccEEEccCCCCCCCCchhhhhcCCCCccEEEcCCCCCCCCchhhhhCC
Q 047190 209 SNLRSLTNLYLGYCDLPPISTPSLLHINYSKSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLHGSIPLAFGHM 288 (1025)
Q Consensus 209 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~~~L~~L~Ls~n~l~~~~p~~~~~l 288 (1025)
+++++|++|++++|.+++.. +..+ ++|++|++++|.+++ . .++.+
T Consensus 103 ~~l~~L~~L~L~~N~l~~l~-----~~~l-~~L~~L~l~~N~l~~--------------------------l---~l~~l 147 (457)
T 3bz5_A 103 TPLTKLTYLNCDTNKLTKLD-----VSQN-PLLTYLNCARNTLTE--------------------------I---DVSHN 147 (457)
T ss_dssp TTCTTCCEEECCSSCCSCCC-----CTTC-TTCCEEECTTSCCSC--------------------------C---CCTTC
T ss_pred CCCCcCCEEECCCCcCCeec-----CCCC-CcCCEEECCCCccce--------------------------e---ccccC
Confidence 55555555555555555431 1122 444444444444443 2 13444
Q ss_pred CCCcEEEccCCCCCC-cchhhcCCCCccEEEeecCCCCCcchHHhhhcCCCCCCCCCCcEEEccccccccccCCCCCCCC
Q 047190 289 ASLRHLDLLSNQLRE-VPKFLGNMSSLKRLVFSYNELRGELSEFIQNVSSGSTKNSSLEWLYLAFNEITGTIPDLGGFPS 367 (1025)
Q Consensus 289 ~~L~~L~Ls~n~l~~-lp~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~l~~~~p~l~~l~~ 367 (1025)
++|++|++++|...+ + .+..+++|++|++++|.+++. | +..++ +|+.|++++|.+++. .++.+++
T Consensus 148 ~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~l-~--l~~l~-------~L~~L~l~~N~l~~~--~l~~l~~ 213 (457)
T 3bz5_A 148 TQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITEL-D--VSQNK-------LLNRLNCDTNNITKL--DLNQNIQ 213 (457)
T ss_dssp TTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCCC-C--CTTCT-------TCCEEECCSSCCSCC--CCTTCTT
T ss_pred CcCCEEECCCCCccccc--ccccCCcCCEEECCCCcccee-c--cccCC-------CCCEEECcCCcCCee--ccccCCC
Confidence 445555555542222 3 234445555555555554442 1 22222 555555555555543 2555566
Q ss_pred CcEEEeecccccCcccccccccCCcceeeccCcccccccchhhhcCCCCCcEEECCCCccccccccCCCCCcccceeecc
Q 047190 368 LQILSLENNRLTGTISKSIGQLSKLELLLLSGNSLRGVISEALFSNLSSLDTLQLSDNSLTLKFSHDWTPPFQLFNIFLG 447 (1025)
Q Consensus 368 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~ 447 (1025)
|++|++++|++++ +| ++.+++|+.|++++|.+++.. ...+++|+.|+++.|. |+.++++
T Consensus 214 L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~----~~~l~~L~~L~l~~n~--------------L~~L~l~ 272 (457)
T 3bz5_A 214 LTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELD----VSTLSKLTTLHCIQTD--------------LLEIDLT 272 (457)
T ss_dssp CSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCC----CTTCTTCCEEECTTCC--------------CSCCCCT
T ss_pred CCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcC----HHHCCCCCEEeccCCC--------------CCEEECC
Confidence 6666666666654 33 555666666666666665432 3345566666655542 2233333
Q ss_pred CCCCCCCCchhhhcCCcccEEEccCCCCCCchhhhhhhccccceEEEccCccCCCCCCCccccccCCCCeeecccCcCcc
Q 047190 448 SCKIGPRFPKWLQSQNQTVALDVSNAGISDIVPDWFWDLTNQLYYLNLSNNEMKGKLPDLSRKFDSYGPGIDVSSNQFDG 527 (1025)
Q Consensus 448 ~~~l~~~~p~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~l~~~~~l~ls~n~l~g 527 (1025)
+|...+.+| +..+ ++|+.|++++|...+
T Consensus 273 ~n~~~~~~~--~~~l-------------------------~~L~~L~Ls~n~~l~------------------------- 300 (457)
T 3bz5_A 273 HNTQLIYFQ--AEGC-------------------------RKIKELDVTHNTQLY------------------------- 300 (457)
T ss_dssp TCTTCCEEE--CTTC-------------------------TTCCCCCCTTCTTCC-------------------------
T ss_pred CCccCCccc--cccc-------------------------ccCCEEECCCCcccc-------------------------
Confidence 333322222 1111 245555555554433
Q ss_pred CCCCCCCCCceeeccCCcccccccccccccCCcccEEEccCccccccCCCcccCCCCCCEEEcCCCcccccCCccccccc
Q 047190 528 PIPLLPPNVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLR 607 (1025)
Q Consensus 528 ~~p~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 607 (1025)
.+|....+++.|++++| ++|++|++++|++++. + +.++++|+.|++++|++++ ++
T Consensus 301 ~l~~~~~~L~~L~l~~~--------------~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~--------l~ 355 (457)
T 3bz5_A 301 LLDCQAAGITELDLSQN--------------PKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQD--------FS 355 (457)
T ss_dssp EEECTTCCCSCCCCTTC--------------TTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCB--------CT
T ss_pred eeccCCCcceEechhhc--------------ccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCCC--------cc
Confidence 33333456677776665 5689999999999984 3 8889999999999999986 24
Q ss_pred CCCEEEcccCcccccCCccccCCCCccEEeCCCCcCccccChhhhhcCCCCcEEEeecCcCcccCcc--cccccC-----
Q 047190 608 SIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPF--QLCYLS----- 680 (1025)
Q Consensus 608 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~--~l~~l~----- 680 (1025)
.|..|++++|.+.|. ..+..|..+++++|+++|.+|..+.....++....-..+........ .+.+++
T Consensus 356 ~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~~~~~~~~~~~~~~~~~~~y~~~~~~i~~k~~~~~~~~ 430 (457)
T 3bz5_A 356 SVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPDLLDQFGNPMNIEPGDGGVYDQATNTITWENLSTDNPA 430 (457)
T ss_dssp TGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTTCBCTTSCCCEEEESSSEEEETTTTEEEESSCCTTSCE
T ss_pred ccccccccCCcEEec-----ceeeecCccccccCcEEEEcChhHhcccCceeeccCCCCccccCCCCeeEEEeccCCCce
Confidence 566778899999876 34567888899999999999988765555665554443322211111 111111
Q ss_pred cccEEEccccccccccCcccc
Q 047190 681 HIQILDLSLNNISGIIPKCFH 701 (1025)
Q Consensus 681 ~L~~L~Ls~N~l~~~~p~~~~ 701 (1025)
-+.....++|.++|.++..+.
T Consensus 431 ~~y~~~~~~~~fsG~i~~p~~ 451 (457)
T 3bz5_A 431 VTYTFTSENGAIVGTVTTPFE 451 (457)
T ss_dssp ECEEEECTTSSEEEEEEEEBC
T ss_pred EEEEEecCCcEEeeEeccccc
Confidence 122333456777777766543
No 31
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=1e-34 Score=337.94 Aligned_cols=182 Identities=19% Similarity=0.153 Sum_probs=123.9
Q ss_pred CcccEEEccCccccccCCCcccCCCCCCEEEcCCCcccccCCcccccccCCCEEEcccCcccccCCccccCCCCccEEeC
Q 047190 559 HLLTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDL 638 (1025)
Q Consensus 559 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 638 (1025)
++|++|++++|++++ +| +..+++|+.|++++|++++.. +..+++|+.|++++| +|+.|++
T Consensus 212 ~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~---~~~l~~L~~L~l~~n--------------~L~~L~l 271 (457)
T 3bz5_A 212 IQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELD---VSTLSKLTTLHCIQT--------------DLLEIDL 271 (457)
T ss_dssp TTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECTTC--------------CCSCCCC
T ss_pred CCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcC---HHHCCCCCEEeccCC--------------CCCEEEC
Confidence 456666666666665 34 556666777777777666543 234556666666554 2445566
Q ss_pred CCCcCccccChhhhhcCCCCcEEEeecCcCcccCcccccccCcccEEEccccccccccCccccCccccccccccCccccc
Q 047190 639 GKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPKCFHNFTAMTKEKSSNLSIIS 718 (1025)
Q Consensus 639 s~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~ 718 (1025)
++|++.|.+|. . .+++|++|++++|+..+.+|. ..++|+.|++++|
T Consensus 272 ~~n~~~~~~~~--~-~l~~L~~L~Ls~n~~l~~l~~---~~~~L~~L~l~~~---------------------------- 317 (457)
T 3bz5_A 272 THNTQLIYFQA--E-GCRKIKELDVTHNTQLYLLDC---QAAGITELDLSQN---------------------------- 317 (457)
T ss_dssp TTCTTCCEEEC--T-TCTTCCCCCCTTCTTCCEEEC---TTCCCSCCCCTTC----------------------------
T ss_pred CCCccCCcccc--c-ccccCCEEECCCCcccceecc---CCCcceEechhhc----------------------------
Confidence 66666655552 2 456666666666665555553 2234444444443
Q ss_pred ccccccccccccceeEeecccCCccceeeccccceeEEEcccCCCCCcChhhHhhcccCCeEeccCccccccCCCCCCCC
Q 047190 719 NYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPRIGQL 798 (1025)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l 798 (1025)
+.|+.|++++|++++. + +++++.|+.|++++|++++ +
T Consensus 318 --------------------------------~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~--------l 354 (457)
T 3bz5_A 318 --------------------------------PKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQD--------F 354 (457)
T ss_dssp --------------------------------TTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCB--------C
T ss_pred --------------------------------ccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCCC--------c
Confidence 2348899999999995 3 8999999999999999997 2
Q ss_pred CCccEEeCCCCcCCCcCcccccCCCCCCEEECcCCcccccCCCC
Q 047190 799 KSLDFLDLSRNHFFGGIPSSLSRLRLLSVMDLSYNNFSGKIPKG 842 (1025)
Q Consensus 799 ~~L~~LdLs~N~l~g~ip~~l~~l~~L~~Ldls~N~l~g~ip~~ 842 (1025)
+.|+.|++++|.++|. ..+..|+.+|+++|+|+|.||..
T Consensus 355 ~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~ 393 (457)
T 3bz5_A 355 SSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPD 393 (457)
T ss_dssp TTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTT
T ss_pred cccccccccCCcEEec-----ceeeecCccccccCcEEEEcChh
Confidence 4677889999999987 24556788999999999999974
No 32
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=3.7e-35 Score=324.97 Aligned_cols=259 Identities=34% Similarity=0.575 Sum_probs=245.0
Q ss_pred CcccEEEccCccccc--cCCCcccCCCCCCEEEcCC-CcccccCCcccccccCCCEEEcccCcccccCCccccCCCCccE
Q 047190 559 HLLTYLDLSNNLLSG--RLPDCWFQFDSLAILNLAN-NSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTL 635 (1025)
Q Consensus 559 ~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~ 635 (1025)
..++.|++++|.+++ .+|..+.++++|++|++++ |.+.+.+|..++.+++|++|++++|++++.+|..|.++++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 468999999999999 8999999999999999995 9999999999999999999999999999999999999999999
Q ss_pred EeCCCCcCccccChhhhhcCCCCcEEEeecCcCcccCcccccccC-cccEEEccccccccccCccccCccccccccccCc
Q 047190 636 MDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLS-HIQILDLSLNNISGIIPKCFHNFTAMTKEKSSNL 714 (1025)
Q Consensus 636 L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~-~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~ 714 (1025)
|++++|++++.+|..+. .+++|++|+|++|++++.+|..+..++ +|++|++++|++++.+|..++.++ |
T Consensus 130 L~Ls~N~l~~~~p~~~~-~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L-------- 199 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSIS-SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-L-------- 199 (313)
T ss_dssp EECCSSEEESCCCGGGG-GCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-C--------
T ss_pred EeCCCCccCCcCChHHh-cCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-c--------
Confidence 99999999999999988 699999999999999999999999998 999999999999999998887654 4
Q ss_pred ccccccccccccccccceeEeecccCCccceeeccccceeEEEcccCCCCCcChhhHhhcccCCeEeccCccccccCCCC
Q 047190 715 SIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPR 794 (1025)
Q Consensus 715 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~ 794 (1025)
+.|+|++|++++.+|..+..+++|+.|+|++|++++.+|.
T Consensus 200 ---------------------------------------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~- 239 (313)
T 1ogq_A 200 ---------------------------------------AFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK- 239 (313)
T ss_dssp ---------------------------------------SEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-
T ss_pred ---------------------------------------cEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-
Confidence 8899999999999999999999999999999999988887
Q ss_pred CCCCCCccEEeCCCCcCCCcCcccccCCCCCCEEECcCCcccccCCCCCCCCCcCCCCcCCCCCCCCCCCCCCC
Q 047190 795 IGQLKSLDFLDLSRNHFFGGIPSSLSRLRLLSVMDLSYNNFSGKIPKGTQLQRFGASTYAGNPELCGLPLPNKC 868 (1025)
Q Consensus 795 ~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~Ldls~N~l~g~ip~~~~~~~~~~~~~~gN~~lcg~~~~~~C 868 (1025)
++.+++|++|||++|+++|.+|..+..+++|++||+++|+++|.+|...++..+....+.|||++||.|.. .|
T Consensus 240 ~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc~~p~~-~C 312 (313)
T 1ogq_A 240 VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP-AC 312 (313)
T ss_dssp CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTTSS-CC
T ss_pred ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCccCCCCC-CC
Confidence 88999999999999999999999999999999999999999999999888888888889999999998876 56
No 33
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=3.7e-33 Score=327.57 Aligned_cols=142 Identities=23% Similarity=0.381 Sum_probs=79.0
Q ss_pred ccEEEcCCCCCCCCchhhhhCCCCCcEEEccCCCCCCcchhhcCCCCccEEEeecCCCCCcchHHhhhcCCCCCCCCCCc
Q 047190 267 VDHIDLGSNQLHGSIPLAFGHMASLRHLDLLSNQLREVPKFLGNMSSLKRLVFSYNELRGELSEFIQNVSSGSTKNSSLE 346 (1025)
Q Consensus 267 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~~L~ 346 (1025)
++.|+++++.+.. +| .+..+++|++|++++|.++++|. +.++++|++|++++|.+.+..+ +..++ +|+
T Consensus 48 l~~L~l~~~~i~~-l~-~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~-------~L~ 115 (466)
T 1o6v_A 48 VTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP--LANLT-------NLT 115 (466)
T ss_dssp CCEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG--GTTCT-------TCC
T ss_pred ccEEecCCCCCcc-Cc-chhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCccccChh--hcCCC-------CCC
Confidence 6666666666653 23 25566666666666666666554 6666666666666666665443 44444 666
Q ss_pred EEEccccccccccCCCCCCCCCcEEEeecccccCcccccccccCCcceeeccCcccccccchhhhcCCCCCcEEECCCCc
Q 047190 347 WLYLAFNEITGTIPDLGGFPSLQILSLENNRLTGTISKSIGQLSKLELLLLSGNSLRGVISEALFSNLSSLDTLQLSDNS 426 (1025)
Q Consensus 347 ~L~L~~n~l~~~~p~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~ 426 (1025)
+|++++|.+++.. .+..+++|++|++++|.+.+. + .+..+++|++|+++ |.+.+.. .+.++++|++|++++|.
T Consensus 116 ~L~L~~n~l~~~~-~~~~l~~L~~L~l~~n~l~~~-~-~~~~l~~L~~L~l~-~~~~~~~---~~~~l~~L~~L~l~~n~ 188 (466)
T 1o6v_A 116 GLTLFNNQITDID-PLKNLTNLNRLELSSNTISDI-S-ALSGLTSLQQLSFG-NQVTDLK---PLANLTTLERLDISSNK 188 (466)
T ss_dssp EEECCSSCCCCCG-GGTTCTTCSEEEEEEEEECCC-G-GGTTCTTCSEEEEE-ESCCCCG---GGTTCTTCCEEECCSSC
T ss_pred EEECCCCCCCCCh-HHcCCCCCCEEECCCCccCCC-h-hhccCCcccEeecC-CcccCch---hhccCCCCCEEECcCCc
Confidence 6666666665432 255666666666666665532 2 35555566666554 3333221 14455555555555554
Q ss_pred c
Q 047190 427 L 427 (1025)
Q Consensus 427 l 427 (1025)
+
T Consensus 189 l 189 (466)
T 1o6v_A 189 V 189 (466)
T ss_dssp C
T ss_pred C
Confidence 3
No 34
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=2.6e-33 Score=328.80 Aligned_cols=214 Identities=24% Similarity=0.350 Sum_probs=152.1
Q ss_pred CcccEEEccCccccccCCCcccCCCCCCEEEcCCCcccccCCcccccccCCCEEEcccCcccccCCccccCCCCccEEeC
Q 047190 559 HLLTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDL 638 (1025)
Q Consensus 559 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 638 (1025)
++|++|++++|.+++. ..+..+++|++|++++|.+++..| ++.+++|++|++++|++++. ..+..+++|+.|++
T Consensus 177 ~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l 250 (466)
T 1o6v_A 177 TTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDL 250 (466)
T ss_dssp TTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEEC
T ss_pred CCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEEC
Confidence 4456666666665532 235566667777777776665444 55566777777777776643 34667777777777
Q ss_pred CCCcCccccChhhhhcCCCCcEEEeecCcCcccCcccccccCcccEEEccccccccccCccccCccccccccccCccccc
Q 047190 639 GKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPKCFHNFTAMTKEKSSNLSIIS 718 (1025)
Q Consensus 639 s~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~ 718 (1025)
++|++++..| +. .+++|++|++++|++++..+ +..+++|+.|++++|++++..| ++.+++|
T Consensus 251 ~~n~l~~~~~--~~-~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L------------ 311 (466)
T 1o6v_A 251 ANNQISNLAP--LS-GLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNL------------ 311 (466)
T ss_dssp CSSCCCCCGG--GT-TCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTC------------
T ss_pred CCCccccchh--hh-cCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCC------------
Confidence 7777774433 33 57777777777777776544 6777778888888887776543 3343333
Q ss_pred ccccccccccccceeEeecccCCccceeeccccceeEEEcccCCCCCcChhhHhhcccCCeEeccCccccccCCCCCCCC
Q 047190 719 NYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPRIGQL 798 (1025)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l 798 (1025)
+.|+|++|++++..| +..+++|+.|++++|++++. ..++.+
T Consensus 312 -----------------------------------~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l 352 (466)
T 1o6v_A 312 -----------------------------------TYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANL 352 (466)
T ss_dssp -----------------------------------SEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTC
T ss_pred -----------------------------------CEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccC
Confidence 778888888887766 67888888888888888875 468888
Q ss_pred CCccEEeCCCCcCCCcCcccccCCCCCCEEECcCCccccc
Q 047190 799 KSLDFLDLSRNHFFGGIPSSLSRLRLLSVMDLSYNNFSGK 838 (1025)
Q Consensus 799 ~~L~~LdLs~N~l~g~ip~~l~~l~~L~~Ldls~N~l~g~ 838 (1025)
++|+.|++++|++++.+| +..+++|+.|++++|++++.
T Consensus 353 ~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~~ 390 (466)
T 1o6v_A 353 TNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNA 390 (466)
T ss_dssp TTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEECC
T ss_pred CCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccCC
Confidence 899999999999988877 78888999999999998873
No 35
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=4e-34 Score=337.35 Aligned_cols=258 Identities=17% Similarity=0.138 Sum_probs=191.5
Q ss_pred CcccEEEccCccccccCCCcccCCCCCCEEEcCCCcccccCCcccccccCCCEEEcccCcccccCCccccCCCCccEEeC
Q 047190 559 HLLTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDL 638 (1025)
Q Consensus 559 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 638 (1025)
++|++|++++|.+++..|..|..+++|++|++++|.+++..+..|..+++|++|++++|++++..+..|.++++|+.|++
T Consensus 104 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l 183 (477)
T 2id5_A 104 SNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRL 183 (477)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEE
T ss_pred CCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeC
Confidence 45666777777776666667777777777777777777766677777777777777777777666666777777777777
Q ss_pred CCCcCccccChhhhhcCCCCcEEEeecCcCcccCcccccccCcccEEEccccccccccCccccCccccccccccCccccc
Q 047190 639 GKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPKCFHNFTAMTKEKSSNLSIIS 718 (1025)
Q Consensus 639 s~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~ 718 (1025)
++|.+.+..+..+. .+++|++|++++|.+.+.+|.......+|+.|+|++|++++..+..+..+++|
T Consensus 184 ~~n~i~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L------------ 250 (477)
T 2id5_A 184 RHLNINAIRDYSFK-RLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYL------------ 250 (477)
T ss_dssp ESCCCCEECTTCSC-SCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTC------------
T ss_pred CCCcCcEeChhhcc-cCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCcccc------------
Confidence 77777744333443 57777777777777776666666666677777777777775444555555554
Q ss_pred ccccccccccccceeEeecccCCccceeeccccceeEEEcccCCCCCcChhhHhhcccCCeEeccCccccccCCCCCCCC
Q 047190 719 NYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPRIGQL 798 (1025)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l 798 (1025)
+.|||++|++++..+..+.++++|+.|+|++|++++..|..|+.+
T Consensus 251 -----------------------------------~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 295 (477)
T 2id5_A 251 -----------------------------------RFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGL 295 (477)
T ss_dssp -----------------------------------CEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTC
T ss_pred -----------------------------------CeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCc
Confidence 678888888887777778888899999999999999999999999
Q ss_pred CCccEEeCCCCcCCCcCcccccCCCCCCEEECcCCcccccCCCCCCCCCcCCCCcCCCCCCCCCCC
Q 047190 799 KSLDFLDLSRNHFFGGIPSSLSRLRLLSVMDLSYNNFSGKIPKGTQLQRFGASTYAGNPELCGLPL 864 (1025)
Q Consensus 799 ~~L~~LdLs~N~l~g~ip~~l~~l~~L~~Ldls~N~l~g~ip~~~~~~~~~~~~~~gN~~lcg~~~ 864 (1025)
++|+.|||++|++++..+..|..+++|+.|++++|++.|..+....+.......+.++...|..|.
T Consensus 296 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~~~~~~~~~~~~~~~~~~C~~p~ 361 (477)
T 2id5_A 296 NYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLLWVFRRRWRLNFNRQQPTCATPE 361 (477)
T ss_dssp TTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGGHHHHTTTTSSCCTTCCCBEEESG
T ss_pred ccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccchHhHHhhhhccccCccCceeCCch
Confidence 999999999999999888888999999999999999998765432222233345677777776553
No 36
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=3.2e-32 Score=321.01 Aligned_cols=235 Identities=19% Similarity=0.120 Sum_probs=189.1
Q ss_pred CCcccEEEccCccccccCCCcccCCCCCCEEEcCCCcccccCCcccccccCCCEEEcccCcccccCCccccCCCCccEEe
Q 047190 558 SHLLTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMD 637 (1025)
Q Consensus 558 ~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ 637 (1025)
+++|+.|++++|.+++..+..|.++++|+.|++++|.+++..+..+..+++|+.|++++|.+.+..+..|..+++|+.|+
T Consensus 127 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ 206 (477)
T 2id5_A 127 LYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLE 206 (477)
T ss_dssp CTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEE
T ss_pred cccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceee
Confidence 35677888888888877777888888888888888888877667788888888888888888888888888889999999
Q ss_pred CCCCcCccccChhhhhcCCCCcEEEeecCcCcccCcccccccCcccEEEccccccccccCccccCccccccccccCcccc
Q 047190 638 LGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPKCFHNFTAMTKEKSSNLSII 717 (1025)
Q Consensus 638 Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~ 717 (1025)
+++|.+.+.+|...+ ...+|++|+|++|++++..+..+..+++|+.|+|++|++++..+..|..+++|
T Consensus 207 l~~~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L----------- 274 (477)
T 2id5_A 207 ISHWPYLDTMTPNCL-YGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRL----------- 274 (477)
T ss_dssp EECCTTCCEECTTTT-TTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTC-----------
T ss_pred CCCCccccccCcccc-cCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccC-----------
Confidence 998888878888777 46689999999999986655778889999999999999988777777766665
Q ss_pred cccccccccccccceeEeecccCCccceeeccccceeEEEcccCCCCCcChhhHhhcccCCeEeccCccccccCCCCCCC
Q 047190 718 SNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPRIGQ 797 (1025)
Q Consensus 718 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~ 797 (1025)
+.|+|++|++++..|..|.++++|+.|+|++|++++..+..|..
T Consensus 275 ------------------------------------~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 318 (477)
T 2id5_A 275 ------------------------------------QEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHS 318 (477)
T ss_dssp ------------------------------------CEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSC
T ss_pred ------------------------------------CEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCC
Confidence 78999999999988999999999999999999999888888899
Q ss_pred CCCccEEeCCCCcCCCcCcccccCCCCCCEEECcCCcccccCCC
Q 047190 798 LKSLDFLDLSRNHFFGGIPSSLSRLRLLSVMDLSYNNFSGKIPK 841 (1025)
Q Consensus 798 l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~Ldls~N~l~g~ip~ 841 (1025)
+++|+.|+|++|.+++..+.. .-...+..+++..+...+.-|.
T Consensus 319 l~~L~~L~l~~N~l~c~c~~~-~~~~~~~~~~~~~~~~~C~~p~ 361 (477)
T 2id5_A 319 VGNLETLILDSNPLACDCRLL-WVFRRRWRLNFNRQQPTCATPE 361 (477)
T ss_dssp GGGCCEEECCSSCEECSGGGH-HHHTTTTSSCCTTCCCBEEESG
T ss_pred CcccCEEEccCCCccCccchH-hHHhhhhccccCccCceeCCch
Confidence 999999999999998653321 1112233345566666665553
No 37
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.98 E-value=9.6e-32 Score=308.14 Aligned_cols=238 Identities=22% Similarity=0.215 Sum_probs=159.4
Q ss_pred CcccEEEccCccccccCCCcccCCCCCCEEEcCCCcccccCCcccccccCCCEEEcccCcccccCCccccCCCCccEEeC
Q 047190 559 HLLTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDL 638 (1025)
Q Consensus 559 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 638 (1025)
++|++|++++|.+++..|..+..+++|++|++++|.+++. .+..+++|+.|++++|.+++. ...++|+.|++
T Consensus 141 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~~~-----~~~~~L~~L~l 212 (390)
T 3o6n_A 141 PKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLSTL-----AIPIAVEELDA 212 (390)
T ss_dssp TTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCSEE-----ECCSSCSEEEC
T ss_pred CCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeeccccccccc-----CCCCcceEEEC
Confidence 4466666666666655566666666777777777766643 244556677777777766532 23356777777
Q ss_pred CCCcCccccChhhhhcCCCCcEEEeecCcCcccCcccccccCcccEEEccccccccccCccccCccccccccccCccccc
Q 047190 639 GKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPKCFHNFTAMTKEKSSNLSIIS 718 (1025)
Q Consensus 639 s~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~ 718 (1025)
++|++. .+|.. ..++|++|++++|.+++. ..+..+++|++|+|++|.+++..|..+..+++|
T Consensus 213 ~~n~l~-~~~~~---~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L------------ 274 (390)
T 3o6n_A 213 SHNSIN-VVRGP---VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRL------------ 274 (390)
T ss_dssp CSSCCC-EEECC---CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSC------------
T ss_pred CCCeee-ecccc---ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccC------------
Confidence 777776 44443 245677777777777653 466777777777777777777667666665555
Q ss_pred ccccccccccccceeEeecccCCccceeeccccceeEEEcccCCCCCcChhhHhhcccCCeEeccCccccccCCCCCCCC
Q 047190 719 NYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPRIGQL 798 (1025)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l 798 (1025)
+.|+|++|++++ +|..+..+++|++|+|++|+++ .+|..++.+
T Consensus 275 -----------------------------------~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l 317 (390)
T 3o6n_A 275 -----------------------------------ERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQF 317 (390)
T ss_dssp -----------------------------------CEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHH
T ss_pred -----------------------------------CEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCcccccc
Confidence 667777777765 3555567778888888888887 456667778
Q ss_pred CCccEEeCCCCcCCCcCcccccCCCCCCEEECcCCcccccCCCCCCCCCcCCCCcCCCCCCCCCC
Q 047190 799 KSLDFLDLSRNHFFGGIPSSLSRLRLLSVMDLSYNNFSGKIPKGTQLQRFGASTYAGNPELCGLP 863 (1025)
Q Consensus 799 ~~L~~LdLs~N~l~g~ip~~l~~l~~L~~Ldls~N~l~g~ip~~~~~~~~~~~~~~gN~~lcg~~ 863 (1025)
++|+.|+|++|++++. | +..++.|+.|++++|++.+.... ..+..+....+.+++..|+.+
T Consensus 318 ~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~~~~-~~~~~~~~~~~~~~~~~c~~~ 378 (390)
T 3o6n_A 318 DRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSLR-ALFRNVARPAVDDADQHCKID 378 (390)
T ss_dssp TTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHHH-HHTTTCCTTTBCCCCSCCCTT
T ss_pred CcCCEEECCCCcccee-C--chhhccCCEEEcCCCCccchhHH-HHHHHHHhhcccccCceeccc
Confidence 8888888888888765 2 66778888999999998875322 123444455567777777653
No 38
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.98 E-value=7.4e-32 Score=326.23 Aligned_cols=238 Identities=22% Similarity=0.221 Sum_probs=182.2
Q ss_pred CcccEEEccCccccccCCCcccCCCCCCEEEcCCCcccccCCcccccccCCCEEEcccCcccccCCccccCCCCccEEeC
Q 047190 559 HLLTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDL 638 (1025)
Q Consensus 559 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 638 (1025)
++|++|++++|.+++..|..|..+++|++|++++|.+++.. +..+++|+.|++++|.+++ +...++|+.|++
T Consensus 147 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~~-----l~~~~~L~~L~l 218 (597)
T 3oja_B 147 PKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLST-----LAIPIAVEELDA 218 (597)
T ss_dssp TTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCSE-----EECCTTCSEEEC
T ss_pred CCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCcccc-----ccCCchhheeec
Confidence 55777777777777777777777888888888888777642 4556778888888887764 234567888888
Q ss_pred CCCcCccccChhhhhcCCCCcEEEeecCcCcccCcccccccCcccEEEccccccccccCccccCccccccccccCccccc
Q 047190 639 GKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPKCFHNFTAMTKEKSSNLSIIS 718 (1025)
Q Consensus 639 s~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~ 718 (1025)
++|.++ .+|..+ .++|+.|+|++|.+++ +..+..+++|+.|+|++|.+++.+|..|+.+++|
T Consensus 219 s~n~l~-~~~~~~---~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L------------ 280 (597)
T 3oja_B 219 SHNSIN-VVRGPV---NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRL------------ 280 (597)
T ss_dssp CSSCCC-EEECSC---CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSC------------
T ss_pred cCCccc-cccccc---CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCC------------
Confidence 888887 444433 4678888888888876 3677888888888888888888888877776666
Q ss_pred ccccccccccccceeEeecccCCccceeeccccceeEEEcccCCCCCcChhhHhhcccCCeEeccCccccccCCCCCCCC
Q 047190 719 NYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPRIGQL 798 (1025)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l 798 (1025)
+.|+|++|++++ +|..+..++.|+.|+|++|.++ .+|..++.+
T Consensus 281 -----------------------------------~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l 323 (597)
T 3oja_B 281 -----------------------------------ERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQF 323 (597)
T ss_dssp -----------------------------------CEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHH
T ss_pred -----------------------------------CEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccC
Confidence 778888888876 4666677888999999999988 577778888
Q ss_pred CCccEEeCCCCcCCCcCcccccCCCCCCEEECcCCcccccCCCCCCCCCcCCCCcCCCCCCCCCC
Q 047190 799 KSLDFLDLSRNHFFGGIPSSLSRLRLLSVMDLSYNNFSGKIPKGTQLQRFGASTYAGNPELCGLP 863 (1025)
Q Consensus 799 ~~L~~LdLs~N~l~g~ip~~l~~l~~L~~Ldls~N~l~g~ip~~~~~~~~~~~~~~gN~~lcg~~ 863 (1025)
++|+.|||++|.+++.. +..++.|+.|++++|+++|..+. ..+..+....+.+++..|+.+
T Consensus 324 ~~L~~L~L~~N~l~~~~---~~~~~~L~~L~l~~N~~~~~~~~-~~~~~~~~~~~~~~~~~C~~~ 384 (597)
T 3oja_B 324 DRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCNSLR-ALFRNVARPAVDDADQHCKID 384 (597)
T ss_dssp TTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEHHHHH-HHTTTCCTTTBCCCCCCCCTT
T ss_pred CCCCEEECCCCCCCCcC---hhhcCCCCEEEeeCCCCCChhHH-HHHHHHhhhccccccccCCcc
Confidence 99999999999998763 66778899999999999987432 235556666788999999864
No 39
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.97 E-value=1.9e-30 Score=297.36 Aligned_cols=314 Identities=21% Similarity=0.212 Sum_probs=222.0
Q ss_pred cCCCCCcEEEccCCCCCCCCCcccccCcccccccccccccCCCCcchhccCCCCCCEEecccCCCCCCCCchhcccCCCC
Q 047190 109 LKLQHLTYLDLSWNNFSGSPIPEFIGSLGKLSELALSSAQFAGPIPHQLGNLSKLQVLDLRFNNLFSSGNLDWLSYLSSL 188 (1025)
Q Consensus 109 ~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~Ls~n~i~~~~~~~~l~~l~~L 188 (1025)
..++++++|++++|.++.. .+..+..+++|++|+|++|.+++..|..++++++|++|++++|.+ ....+..++++++|
T Consensus 42 ~~l~~l~~l~l~~~~l~~l-~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L 119 (390)
T 3o6n_A 42 ITLNNQKIVTFKNSTMRKL-PAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAI-RYLPPHVFQNVPLL 119 (390)
T ss_dssp GGGCCCSEEEEESCEESEE-CTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTC
T ss_pred cccCCceEEEecCCchhhC-ChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCC-CcCCHHHhcCCCCC
Confidence 4578999999999998853 234478899999999999999877777899999999999999987 33445668889999
Q ss_pred CeeeccCCcCCCCcchHHhhCCCCCCCEEEcCCCCCCCCCCCcccccccCCcccEEEccCCCCCCCCchhhhhcCCCCcc
Q 047190 189 RYLDLADCKLSKFSNWVQVLSNLRSLTNLYLGYCDLPPISTPSLLHINYSKSLEVIDLSNNYLTNSIYPWLFNVSSNLVD 268 (1025)
Q Consensus 189 ~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~~~L~ 268 (1025)
++|++++|.++.++. ..+.++++|++|++++|.+.+..+. .+..+ ++|++|++++|.+++. .+..++. |+
T Consensus 120 ~~L~L~~n~l~~l~~--~~~~~l~~L~~L~L~~n~l~~~~~~--~~~~l-~~L~~L~l~~n~l~~~---~~~~l~~--L~ 189 (390)
T 3o6n_A 120 TVLVLERNDLSSLPR--GIFHNTPKLTTLSMSNNNLERIEDD--TFQAT-TSLQNLQLSSNRLTHV---DLSLIPS--LF 189 (390)
T ss_dssp CEEECCSSCCCCCCT--TTTTTCTTCCEEECCSSCCCBCCTT--TTSSC-TTCCEEECCSSCCSBC---CGGGCTT--CS
T ss_pred CEEECCCCccCcCCH--HHhcCCCCCcEEECCCCccCccChh--hccCC-CCCCEEECCCCcCCcc---ccccccc--cc
Confidence 999999998887653 3467888888888888888877664 23333 7888888888887753 2344555 77
Q ss_pred EEEcCCCCCCCCchhhhhCCCCCcEEEccCCCCCCcchhhcCCCCccEEEeecCCCCCcchHHhhhcCCCCCCCCCCcEE
Q 047190 269 HIDLGSNQLHGSIPLAFGHMASLRHLDLLSNQLREVPKFLGNMSSLKRLVFSYNELRGELSEFIQNVSSGSTKNSSLEWL 348 (1025)
Q Consensus 269 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~~L~~L 348 (1025)
+|++++|.+++ +...++|++|++++|.++.+|... .++|++|++++|.+++. ..+..++ +|++|
T Consensus 190 ~L~l~~n~l~~-----~~~~~~L~~L~l~~n~l~~~~~~~--~~~L~~L~l~~n~l~~~--~~l~~l~-------~L~~L 253 (390)
T 3o6n_A 190 HANVSYNLLST-----LAIPIAVEELDASHNSINVVRGPV--NVELTILKLQHNNLTDT--AWLLNYP-------GLVEV 253 (390)
T ss_dssp EEECCSSCCSE-----EECCSSCSEEECCSSCCCEEECCC--CSSCCEEECCSSCCCCC--GGGGGCT-------TCSEE
T ss_pred eeecccccccc-----cCCCCcceEEECCCCeeeeccccc--cccccEEECCCCCCccc--HHHcCCC-------CccEE
Confidence 78887777764 233457777777777777765432 46777777777777654 3455555 77777
Q ss_pred EccccccccccCC-CCCCCCCcEEEeecccccCcccccccccCCcceeeccCcccccccchhhhcCCCCCcEEECCCCcc
Q 047190 349 YLAFNEITGTIPD-LGGFPSLQILSLENNRLTGTISKSIGQLSKLELLLLSGNSLRGVISEALFSNLSSLDTLQLSDNSL 427 (1025)
Q Consensus 349 ~L~~n~l~~~~p~-l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l 427 (1025)
++++|.+++..|. +..+++|++|++++|++++ +|..+..+++|++|++++|.+.+ ++.. +..+++|++|++++|++
T Consensus 254 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~~-~~~~-~~~l~~L~~L~L~~N~i 330 (390)
T 3o6n_A 254 DLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLH-VERN-QPQFDRLENLYLDHNSI 330 (390)
T ss_dssp ECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCCC-CGGG-HHHHTTCSEEECCSSCC
T ss_pred ECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCccee-cCcc-ccccCcCCEEECCCCcc
Confidence 7777777766554 6677777777777777763 45555666777777777777763 3332 55666777777777765
Q ss_pred ccccccCCCCCcccceeeccCCCCCCCCchhhhcCCcccEEEccCCCCCCchh
Q 047190 428 TLKFSHDWTPPFQLFNIFLGSCKIGPRFPKWLQSQNQTVALDVSNAGISDIVP 480 (1025)
Q Consensus 428 ~~~~~~~~~~~~~L~~L~L~~~~l~~~~p~~l~~~~~L~~L~Ls~n~i~~~~~ 480 (1025)
+.. + +..+++|+.|++++|.+.....
T Consensus 331 ~~~-------------------------~--~~~~~~L~~L~l~~N~~~~~~~ 356 (390)
T 3o6n_A 331 VTL-------------------------K--LSTHHTLKNLTLSHNDWDCNSL 356 (390)
T ss_dssp CCC-------------------------C--CCTTCCCSEEECCSSCEEHHHH
T ss_pred cee-------------------------C--chhhccCCEEEcCCCCccchhH
Confidence 432 1 3455677778888877765433
No 40
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.97 E-value=1.7e-29 Score=284.69 Aligned_cols=305 Identities=23% Similarity=0.303 Sum_probs=175.1
Q ss_pred CCCCCcEEEccCCCCCCcchhhcCCCCccEEEeecCCCCCcchHHhhhcCCCCCCCCCCcEEEccccccccccCCCCCCC
Q 047190 287 HMASLRHLDLLSNQLREVPKFLGNMSSLKRLVFSYNELRGELSEFIQNVSSGSTKNSSLEWLYLAFNEITGTIPDLGGFP 366 (1025)
Q Consensus 287 ~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~l~~~~p~l~~l~ 366 (1025)
.+++|++|++++|.+..+|. +..+++|++|++++|.+++..+ +..++ +|++|++++|.++. ++.+..++
T Consensus 42 ~l~~L~~L~l~~~~i~~~~~-~~~~~~L~~L~l~~n~i~~~~~--~~~l~-------~L~~L~L~~n~i~~-~~~~~~l~ 110 (347)
T 4fmz_A 42 ELESITKLVVAGEKVASIQG-IEYLTNLEYLNLNGNQITDISP--LSNLV-------KLTNLYIGTNKITD-ISALQNLT 110 (347)
T ss_dssp HHTTCSEEECCSSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG--GTTCT-------TCCEEECCSSCCCC-CGGGTTCT
T ss_pred hcccccEEEEeCCccccchh-hhhcCCccEEEccCCccccchh--hhcCC-------cCCEEEccCCcccC-chHHcCCC
Confidence 34444444554444444432 4444445555555544443322 33333 45555555554442 33445555
Q ss_pred CCcEEEeecccccCcccccccccCCcceeeccCcccccccchhhhcCCCCCcEEECCCCccccccccCCCCCcccceeec
Q 047190 367 SLQILSLENNRLTGTISKSIGQLSKLELLLLSGNSLRGVISEALFSNLSSLDTLQLSDNSLTLKFSHDWTPPFQLFNIFL 446 (1025)
Q Consensus 367 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L 446 (1025)
+|++|++++|.+++..+ +..+++|++|++++|.....++. +..+++|++|++++|.+.....
T Consensus 111 ~L~~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~~--~~~l~~L~~L~l~~~~~~~~~~-------------- 172 (347)
T 4fmz_A 111 NLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLSP--LSNMTGLNYLTVTESKVKDVTP-------------- 172 (347)
T ss_dssp TCSEEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCGG--GTTCTTCCEEECCSSCCCCCGG--------------
T ss_pred cCCEEECcCCcccCchh--hccCCceeEEECCCCCCcccccc--hhhCCCCcEEEecCCCcCCchh--------------
Confidence 55555555555543222 45555555555555544333332 4555555555555554432111
Q ss_pred cCCCCCCCCchhhhcCCcccEEEccCCCCCCchhhhhhhccccceEEEccCccCCCCCCCccccccCCCCeeecccCcCc
Q 047190 447 GSCKIGPRFPKWLQSQNQTVALDVSNAGISDIVPDWFWDLTNQLYYLNLSNNEMKGKLPDLSRKFDSYGPGIDVSSNQFD 526 (1025)
Q Consensus 447 ~~~~l~~~~p~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~l~~~~~l~ls~n~l~ 526 (1025)
+..+++|+.|++++|.+.+..+ +.. .++|++|++++|.+++.
T Consensus 173 ------------~~~l~~L~~L~l~~n~l~~~~~--~~~-l~~L~~L~l~~n~l~~~----------------------- 214 (347)
T 4fmz_A 173 ------------IANLTDLYSLSLNYNQIEDISP--LAS-LTSLHYFTAYVNQITDI----------------------- 214 (347)
T ss_dssp ------------GGGCTTCSEEECTTSCCCCCGG--GGG-CTTCCEEECCSSCCCCC-----------------------
T ss_pred ------------hccCCCCCEEEccCCccccccc--ccC-CCccceeecccCCCCCC-----------------------
Confidence 3344445555555555544433 222 22455555555544321
Q ss_pred cCCCCCCCCCceeeccCCcccccccccccccCCcccEEEccCccccccCCCcccCCCCCCEEEcCCCcccccCCcccccc
Q 047190 527 GPIPLLPPNVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFL 606 (1025)
Q Consensus 527 g~~p~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 606 (1025)
.+ ...+++|++|++++|.+++..+ +..+++|++|++++|.+++. +.+..+
T Consensus 215 -----------------------~~---~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l 264 (347)
T 4fmz_A 215 -----------------------TP---VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDL 264 (347)
T ss_dssp -----------------------GG---GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTC
T ss_pred -----------------------ch---hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hhHhcC
Confidence 11 1123567777777777775433 67777888888888877753 457777
Q ss_pred cCCCEEEcccCcccccCCccccCCCCccEEeCCCCcCccccChhhhhcCCCCcEEEeecCcCcccCcccccccCcccEEE
Q 047190 607 RSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILD 686 (1025)
Q Consensus 607 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ 686 (1025)
++|++|++++|++++. ..+..+++|+.|++++|++++..|..+. .+++|++|++++|++++..| +..+++|+.|+
T Consensus 265 ~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~-~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~ 339 (347)
T 4fmz_A 265 TKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIG-GLTNLTTLFLSQNHITDIRP--LASLSKMDSAD 339 (347)
T ss_dssp TTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHH-TCTTCSEEECCSSSCCCCGG--GGGCTTCSEES
T ss_pred CCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhh-ccccCCEEEccCCccccccC--hhhhhccceee
Confidence 8888888888888764 4577888888888888888866666666 68888888888888887666 77888888888
Q ss_pred ccccccc
Q 047190 687 LSLNNIS 693 (1025)
Q Consensus 687 Ls~N~l~ 693 (1025)
+++|+++
T Consensus 340 l~~N~i~ 346 (347)
T 4fmz_A 340 FANQVIK 346 (347)
T ss_dssp SSCC---
T ss_pred hhhhccc
Confidence 8888875
No 41
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.97 E-value=3.2e-29 Score=282.41 Aligned_cols=284 Identities=26% Similarity=0.360 Sum_probs=161.1
Q ss_pred cCCCCCcEEEccCCCCCCCCCcccccCcccccccccccccCCCCcchhccCCCCCCEEecccCCCCCCCCchhcccCCCC
Q 047190 109 LKLQHLTYLDLSWNNFSGSPIPEFIGSLGKLSELALSSAQFAGPIPHQLGNLSKLQVLDLRFNNLFSSGNLDWLSYLSSL 188 (1025)
Q Consensus 109 ~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~Ls~n~i~~~~~~~~l~~l~~L 188 (1025)
..+++|++|+++++.+.. +| .+..+++|++|++++|.+++. |. +.++++|++|++++|.+.. .+.+..+++|
T Consensus 41 ~~l~~L~~L~l~~~~i~~--~~-~~~~~~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~L~~n~i~~---~~~~~~l~~L 112 (347)
T 4fmz_A 41 EELESITKLVVAGEKVAS--IQ-GIEYLTNLEYLNLNGNQITDI-SP-LSNLVKLTNLYIGTNKITD---ISALQNLTNL 112 (347)
T ss_dssp HHHTTCSEEECCSSCCCC--CT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCC---CGGGTTCTTC
T ss_pred hhcccccEEEEeCCcccc--ch-hhhhcCCccEEEccCCccccc-hh-hhcCCcCCEEEccCCcccC---chHHcCCCcC
Confidence 355666777777776663 33 366667777777777766643 33 6667777777777766522 2346666677
Q ss_pred CeeeccCCcCCCCcchHHhhCCCCCCCEEEcCCCCCCCCCCCcccccccCCcccEEEccCCCCCCCCchhhhhcCCCCcc
Q 047190 189 RYLDLADCKLSKFSNWVQVLSNLRSLTNLYLGYCDLPPISTPSLLHINYSKSLEVIDLSNNYLTNSIYPWLFNVSSNLVD 268 (1025)
Q Consensus 189 ~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~~~L~ 268 (1025)
++|++++|.++.++. +.++++|++|++++|......+ .+..+ ++|++|++++|.+.+..+ +..++. |+
T Consensus 113 ~~L~l~~n~i~~~~~----~~~l~~L~~L~l~~n~~~~~~~---~~~~l-~~L~~L~l~~~~~~~~~~--~~~l~~--L~ 180 (347)
T 4fmz_A 113 RELYLNEDNISDISP----LANLTKMYSLNLGANHNLSDLS---PLSNM-TGLNYLTVTESKVKDVTP--IANLTD--LY 180 (347)
T ss_dssp SEEECTTSCCCCCGG----GTTCTTCCEEECTTCTTCCCCG---GGTTC-TTCCEEECCSSCCCCCGG--GGGCTT--CS
T ss_pred CEEECcCCcccCchh----hccCCceeEEECCCCCCccccc---chhhC-CCCcEEEecCCCcCCchh--hccCCC--CC
Confidence 777777766665432 5666666666666664333322 12222 566666666666554322 445555 66
Q ss_pred EEEcCCCCCCCCchhhhhCCCCCcEEEccCCCCCCcchhhcCCCCccEEEeecCCCCCcchHHhhhcCCCCCCCCCCcEE
Q 047190 269 HIDLGSNQLHGSIPLAFGHMASLRHLDLLSNQLREVPKFLGNMSSLKRLVFSYNELRGELSEFIQNVSSGSTKNSSLEWL 348 (1025)
Q Consensus 269 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~~L~~L 348 (1025)
+|++++|.+.+..+ +..+++|+.|++++|.+++++. +..+++|++|++++|.+++..+ +..++ +|++|
T Consensus 181 ~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~l~~~~~--~~~l~-------~L~~L 248 (347)
T 4fmz_A 181 SLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNKITDLSP--LANLS-------QLTWL 248 (347)
T ss_dssp EEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG--GTTCT-------TCCEE
T ss_pred EEEccCCccccccc--ccCCCccceeecccCCCCCCch-hhcCCcCCEEEccCCccCCCcc--hhcCC-------CCCEE
Confidence 66666666554332 5556666666666666655443 5555666666666666554433 33333 56666
Q ss_pred EccccccccccCCCCCCCCCcEEEeecccccCcccccccccCCcceeeccCcccccccchhhhcCCCCCcEEECCCCccc
Q 047190 349 YLAFNEITGTIPDLGGFPSLQILSLENNRLTGTISKSIGQLSKLELLLLSGNSLRGVISEALFSNLSSLDTLQLSDNSLT 428 (1025)
Q Consensus 349 ~L~~n~l~~~~p~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~ 428 (1025)
++++|.+++ ++.+..+++|++|++++|++++. ..+..+++|++|++++|.+.+..+. .+..+++|++|++++|+++
T Consensus 249 ~l~~n~l~~-~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~L~~n~l~ 324 (347)
T 4fmz_A 249 EIGTNQISD-INAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDME-VIGGLTNLTTLFLSQNHIT 324 (347)
T ss_dssp ECCSSCCCC-CGGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHH-HHHTCTTCSEEECCSSSCC
T ss_pred ECCCCccCC-ChhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChh-HhhccccCCEEEccCCccc
Confidence 666665553 34455556666666666655543 2355555666666666665544333 3555555555555555554
No 42
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.97 E-value=2.7e-29 Score=303.71 Aligned_cols=310 Identities=23% Similarity=0.253 Sum_probs=199.4
Q ss_pred CCCCcEEEccCCCCCCcch-hhcCCCCccEEEeecCCCCCcchHHhhhcCCCCCCCCCCcEEEccccccccccCC-CCCC
Q 047190 288 MASLRHLDLLSNQLREVPK-FLGNMSSLKRLVFSYNELRGELSEFIQNVSSGSTKNSSLEWLYLAFNEITGTIPD-LGGF 365 (1025)
Q Consensus 288 l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~l~~~~p~-l~~l 365 (1025)
+.+++.|++++|.++.+|. .+..+++|++|++++|.+.+..+..+..++ +|++|+|++|.+++..|. ++.+
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-------~L~~L~L~~n~l~~~~~~~~~~l 122 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAH-------TIQKLYMGFNAIRYLPPHVFQNV 122 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCT-------TCCEEECCSSCCCCCCTTTTTTC
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCC-------CCCEEECCCCcCCCCCHHHHcCC
Confidence 4456666666666655543 345555566666655555555444444444 555555555555544443 4555
Q ss_pred CCCcEEEeecccccCcccccccccCCcceeeccCcccccccchhhhcCCCCCcEEECCCCccccccccCCCCCcccceee
Q 047190 366 PSLQILSLENNRLTGTISKSIGQLSKLELLLLSGNSLRGVISEALFSNLSSLDTLQLSDNSLTLKFSHDWTPPFQLFNIF 445 (1025)
Q Consensus 366 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~ 445 (1025)
++|++|++++|.+++..+..|+.+++|++|++++|.+.+..+. .|.++++|++|++++|.+++.
T Consensus 123 ~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~--------------- 186 (597)
T 3oja_B 123 PLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDD-TFQATTSLQNLQLSSNRLTHV--------------- 186 (597)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTT-TTTTCTTCCEEECTTSCCSBC---------------
T ss_pred CCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChh-hhhcCCcCcEEECcCCCCCCc---------------
Confidence 5555555555555543333344555555555555555443332 244455555555554444321
Q ss_pred ccCCCCCCCCchhhhcCCcccEEEccCCCCCCchhhhhhhccccceEEEccCccCCCCCCCccccccCCCCeeecccCcC
Q 047190 446 LGSCKIGPRFPKWLQSQNQTVALDVSNAGISDIVPDWFWDLTNQLYYLNLSNNEMKGKLPDLSRKFDSYGPGIDVSSNQF 525 (1025)
Q Consensus 446 L~~~~l~~~~p~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~l~~~~~l~ls~n~l 525 (1025)
. +..+++|+.|++++|.+.+..
T Consensus 187 ---------~---~~~l~~L~~L~l~~n~l~~l~---------------------------------------------- 208 (597)
T 3oja_B 187 ---------D---LSLIPSLFHANVSYNLLSTLA---------------------------------------------- 208 (597)
T ss_dssp ---------C---GGGCTTCSEEECCSSCCSEEE----------------------------------------------
T ss_pred ---------C---hhhhhhhhhhhcccCcccccc----------------------------------------------
Confidence 0 122333444444444333221
Q ss_pred ccCCCCCCCCCceeeccCCcccccccccccccCCcccEEEccCccccccCCCcccCCCCCCEEEcCCCcccccCCccccc
Q 047190 526 DGPIPLLPPNVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSF 605 (1025)
Q Consensus 526 ~g~~p~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 605 (1025)
.+.+|+.|++++|.+....+.. .++|+.|++++|.+++ +..+..+++|+.|+|++|.+++..|..+..
T Consensus 209 ------~~~~L~~L~ls~n~l~~~~~~~----~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~ 276 (597)
T 3oja_B 209 ------IPIAVEELDASHNSINVVRGPV----NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVK 276 (597)
T ss_dssp ------CCTTCSEEECCSSCCCEEECSC----CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTT
T ss_pred ------CCchhheeeccCCccccccccc----CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcC
Confidence 1234555555555544332221 2568889999998886 367888999999999999999998999999
Q ss_pred ccCCCEEEcccCcccccCCccccCCCCccEEeCCCCcCccccChhhhhcCCCCcEEEeecCcCcccCcccccccCcccEE
Q 047190 606 LRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQIL 685 (1025)
Q Consensus 606 l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L 685 (1025)
+++|++|+|++|.+++ +|..+..+++|+.|+|++|+++ .+|.++. .+++|++|+|++|++++.. +..+++|+.|
T Consensus 277 l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~-~l~~L~~L~L~~N~l~~~~---~~~~~~L~~L 350 (597)
T 3oja_B 277 MQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQP-QFDRLENLYLDHNSIVTLK---LSTHHTLKNL 350 (597)
T ss_dssp CSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHH-HHTTCSEEECCSSCCCCCC---CCTTCCCSEE
T ss_pred ccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccc-cCCCCCEEECCCCCCCCcC---hhhcCCCCEE
Confidence 9999999999999987 4667788999999999999998 7888887 6999999999999998653 6778899999
Q ss_pred Ecccccccccc
Q 047190 686 DLSLNNISGII 696 (1025)
Q Consensus 686 ~Ls~N~l~~~~ 696 (1025)
+|++|++++..
T Consensus 351 ~l~~N~~~~~~ 361 (597)
T 3oja_B 351 TLSHNDWDCNS 361 (597)
T ss_dssp ECCSSCEEHHH
T ss_pred EeeCCCCCChh
Confidence 99999998653
No 43
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.96 E-value=2.4e-30 Score=288.04 Aligned_cols=270 Identities=16% Similarity=0.237 Sum_probs=179.8
Q ss_pred CCCCHHHHHHHHHHHhcC-CCCCCCCCCCCCC-CCCCCCCcccceEecC--------CCCcEEEEECCCCCCCCCCcccc
Q 047190 33 ISCLDEEKESLLAFKQGL-IDESGILSSWGRE-DEKRNCCKWRGVRCSN--------KTGHVLGLDLRASSDSPVDALKG 102 (1025)
Q Consensus 33 ~~~~~~~~~~ll~~k~~~-~~~~~~l~~W~~~-~~~~~~c~w~gv~C~~--------~~~~v~~L~L~~~~~~~~~~l~g 102 (1025)
..+..+|++||++||+++ .|+.+.+.+|... ....++|.|.|+.|.. ..++|+.|+|++ +.+.
T Consensus 22 ~~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~------n~l~- 94 (328)
T 4fcg_A 22 STALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRS------VPLP- 94 (328)
T ss_dssp -CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEES------SCCS-
T ss_pred cccCchHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccC------CCch-
Confidence 356788999999999998 4776777889310 1467899999999952 346899999988 5565
Q ss_pred cccccCcCCCCCcEEEccCCCCCCCCCcccccCcccccccccccccCCCCcchhccCCCCCCEEecccCCCCCCCCchh-
Q 047190 103 TINPSLLKLQHLTYLDLSWNNFSGSPIPEFIGSLGKLSELALSSAQFAGPIPHQLGNLSKLQVLDLRFNNLFSSGNLDW- 181 (1025)
Q Consensus 103 ~l~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~Ls~n~i~~~~~~~~- 181 (1025)
.+|+.+.++++|++|+|++|.++ .+|..++++++|++|+|++|.++ .+|..++++++|++|++++|++.. ..+..
T Consensus 95 ~lp~~l~~l~~L~~L~L~~n~l~--~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~-~~p~~~ 170 (328)
T 4fcg_A 95 QFPDQAFRLSHLQHMTIDAAGLM--ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELT-ELPEPL 170 (328)
T ss_dssp SCCSCGGGGTTCSEEEEESSCCC--CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCC-CCCSCS
T ss_pred hcChhhhhCCCCCEEECCCCCcc--chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCcc-ccChhH
Confidence 78888888999999999999998 48888999999999999999998 788889999999999999987532 22333
Q ss_pred --------cccCCCCCeeeccCCcCCCCcchHHhhCCCCCCCEEEcCCCCCCCCCCCcccccccCCcccEEEccCCCCCC
Q 047190 182 --------LSYLSSLRYLDLADCKLSKFSNWVQVLSNLRSLTNLYLGYCDLPPISTPSLLHINYSKSLEVIDLSNNYLTN 253 (1025)
Q Consensus 182 --------l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~ 253 (1025)
+.++++|++|++++|.++.++ ..+.++++|++|++++|.+.+.++ .+..+ ++|++|++++|.+.+
T Consensus 171 ~~~~~~~~~~~l~~L~~L~L~~n~l~~lp---~~l~~l~~L~~L~L~~N~l~~l~~---~l~~l-~~L~~L~Ls~n~~~~ 243 (328)
T 4fcg_A 171 ASTDASGEHQGLVNLQSLRLEWTGIRSLP---ASIANLQNLKSLKIRNSPLSALGP---AIHHL-PKLEELDLRGCTALR 243 (328)
T ss_dssp EEEC-CCCEEESTTCCEEEEEEECCCCCC---GGGGGCTTCCEEEEESSCCCCCCG---GGGGC-TTCCEEECTTCTTCC
T ss_pred hhccchhhhccCCCCCEEECcCCCcCcch---HhhcCCCCCCEEEccCCCCCcCch---hhccC-CCCCEEECcCCcchh
Confidence 334777777777777766543 345566666666666666554333 12222 555555555555555
Q ss_pred CCchhhhhcCCCCccEEEcCCCCCCCCchhhhhCCCCCcEEEccCCCCCC-cchhhcCCCCccEEEeecC
Q 047190 254 SIYPWLFNVSSNLVDHIDLGSNQLHGSIPLAFGHMASLRHLDLLSNQLRE-VPKFLGNMSSLKRLVFSYN 322 (1025)
Q Consensus 254 ~~~~~l~~l~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~-lp~~l~~l~~L~~L~Ls~n 322 (1025)
.+|..+..+.+ |++|++++|.+.+.+|..++.+++|++|+|++|.+.+ +|+.++++++|+.+++..+
T Consensus 244 ~~p~~~~~l~~--L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 244 NYPPIFGGRAP--LKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH 311 (328)
T ss_dssp BCCCCTTCCCC--CCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGG
T ss_pred hhHHHhcCCCC--CCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHH
Confidence 55555544444 5555555555554555445555555555555544444 4545555555555544443
No 44
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.96 E-value=4e-32 Score=318.95 Aligned_cols=137 Identities=19% Similarity=0.133 Sum_probs=68.7
Q ss_pred CcccEEEccCcccccc----CCCcccCCCCCCEEEcCCCcccccC-----CcccccccCCCEEEcccCccccc----CCc
Q 047190 559 HLLTYLDLSNNLLSGR----LPDCWFQFDSLAILNLANNSFFGEI-----PDSMSFLRSIGSLSLYNNSLSGG----LPS 625 (1025)
Q Consensus 559 ~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~-----p~~~~~l~~L~~L~L~~N~l~~~----~p~ 625 (1025)
+.|++|++++|.+++. ++..+..+++|++|++++|.+++.. +..+..+++|++|++++|.+++. ++.
T Consensus 199 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~ 278 (461)
T 1z7x_W 199 CQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCR 278 (461)
T ss_dssp CCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHH
T ss_pred CCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHH
Confidence 3566666666666543 3444555566666666666554321 11112345556666666655543 344
Q ss_pred cccCCCCccEEeCCCCcCccccChhhhh----cCCCCcEEEeecCcCccc----CcccccccCcccEEEccccccccc
Q 047190 626 FFMNGSQLTLMDLGKNGLSGEIPTWIGE----SLPNLVVLSLRSNKFHGN----IPFQLCYLSHIQILDLSLNNISGI 695 (1025)
Q Consensus 626 ~~~~l~~L~~L~Ls~N~l~g~ip~~~~~----~l~~L~~L~L~~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~ 695 (1025)
.+..+++|++|++++|++++..+..+.. ..++|++|+|++|.+++. ++..+..+++|++|+|++|.+++.
T Consensus 279 ~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~ 356 (461)
T 1z7x_W 279 VLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDA 356 (461)
T ss_dssp HHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHH
T ss_pred HHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccc
Confidence 4555555555555555554333222221 124555555555555543 233444445555555555555433
No 45
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.96 E-value=3.1e-31 Score=311.44 Aligned_cols=385 Identities=21% Similarity=0.175 Sum_probs=211.4
Q ss_pred CCCcEEEccCCCCCCCCCcccccCcccccccccccccCCC----CcchhccCCCCCCEEecccCCCCCCCCchhcccCC-
Q 047190 112 QHLTYLDLSWNNFSGSPIPEFIGSLGKLSELALSSAQFAG----PIPHQLGNLSKLQVLDLRFNNLFSSGNLDWLSYLS- 186 (1025)
Q Consensus 112 ~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~----~~p~~l~~L~~L~~L~Ls~n~i~~~~~~~~l~~l~- 186 (1025)
++|++|||++|.++.......+..+++|++|+|++|++++ .++..+..+++|++|+|++|.+...........++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 3455666666665543223335556666666666666553 23455555666666666666542211112222333
Q ss_pred ---CCCeeeccCCcCCCCc--chHHhhCCCCCCCEEEcCCCCCCCCCCCcccc--cccCCcccEEEccCCCCCCCC----
Q 047190 187 ---SLRYLDLADCKLSKFS--NWVQVLSNLRSLTNLYLGYCDLPPISTPSLLH--INYSKSLEVIDLSNNYLTNSI---- 255 (1025)
Q Consensus 187 ---~L~~L~L~~n~l~~~~--~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~--~~~~~~L~~L~Ls~n~l~~~~---- 255 (1025)
+|++|++++|.++... .++..+.++++|++|++++|.+.+.....+.. ....++|++|++++|.+++..
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l 162 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL 162 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence 4666666666655321 33455666666666666666554322211110 111145666666666665533
Q ss_pred chhhhhcCCCCccEEEcCCCCCCCCchhhhh-----CCCCCcEEEccCCCCCC-----cchhhcCCCCccEEEeecCCCC
Q 047190 256 YPWLFNVSSNLVDHIDLGSNQLHGSIPLAFG-----HMASLRHLDLLSNQLRE-----VPKFLGNMSSLKRLVFSYNELR 325 (1025)
Q Consensus 256 ~~~l~~l~~~~L~~L~Ls~n~l~~~~p~~~~-----~l~~L~~L~Ls~n~l~~-----lp~~l~~l~~L~~L~Ls~n~l~ 325 (1025)
+..+..++. |++|++++|.+.+..+..+. ..++|++|++++|.++. ++..+..+++|++|++++|.+.
T Consensus 163 ~~~l~~~~~--L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 240 (461)
T 1z7x_W 163 ASVLRAKPD--FKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLG 240 (461)
T ss_dssp HHHHHHCTT--CCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCH
T ss_pred HHHHhhCCC--CCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCC
Confidence 333344455 66666666666544333332 24566666666666665 3555666666666666666665
Q ss_pred CcchHHhhhcCCCCCCCCCCcEEEccccccccc----cCC-CCCCCCCcEEEeecccccCccccccccc-----CCccee
Q 047190 326 GELSEFIQNVSSGSTKNSSLEWLYLAFNEITGT----IPD-LGGFPSLQILSLENNRLTGTISKSIGQL-----SKLELL 395 (1025)
Q Consensus 326 ~~~~~~~~~l~~~~~~~~~L~~L~L~~n~l~~~----~p~-l~~l~~L~~L~L~~n~l~~~~p~~l~~l-----~~L~~L 395 (1025)
+.....+.... ...+++|++|++++|.++.. ++. +..+++|++|++++|.+++..+..+... ++|++|
T Consensus 241 ~~~~~~l~~~~--~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L 318 (461)
T 1z7x_W 241 DVGMAELCPGL--LHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESL 318 (461)
T ss_dssp HHHHHHHHHHH--TSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEE
T ss_pred hHHHHHHHHHH--hcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceee
Confidence 43322221100 00122666666666666542 222 4456666677777666654444333322 467777
Q ss_pred eccCccccccc----chhhhcCCCCCcEEECCCCccccccccCCC-----CCcccceeeccCCCCCC----CCchhhhcC
Q 047190 396 LLSGNSLRGVI----SEALFSNLSSLDTLQLSDNSLTLKFSHDWT-----PPFQLFNIFLGSCKIGP----RFPKWLQSQ 462 (1025)
Q Consensus 396 ~L~~N~l~~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-----~~~~L~~L~L~~~~l~~----~~p~~l~~~ 462 (1025)
++++|.+++.. +. .+..+++|++|++++|.++......+. +.++|+.|++++|.++. .+|..+..+
T Consensus 319 ~L~~n~l~~~~~~~l~~-~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~ 397 (461)
T 1z7x_W 319 WVKSCSFTAACCSHFSS-VLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLAN 397 (461)
T ss_dssp ECTTSCCBGGGHHHHHH-HHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHC
T ss_pred EcCCCCCchHHHHHHHH-HHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhC
Confidence 77777666432 22 245567777777777766543322221 24567777777777665 567778888
Q ss_pred CcccEEEccCCCCCCchhhhhhhcc----ccceEEEccCccCC
Q 047190 463 NQTVALDVSNAGISDIVPDWFWDLT----NQLYYLNLSNNEMK 501 (1025)
Q Consensus 463 ~~L~~L~Ls~n~i~~~~~~~~~~~~----~~L~~L~Ls~N~l~ 501 (1025)
++|+.|++++|.+++.....+.... .+|+.|++.++.+.
T Consensus 398 ~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~ 440 (461)
T 1z7x_W 398 HSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWS 440 (461)
T ss_dssp CCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCC
T ss_pred CCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccC
Confidence 8899999999988876555554322 25777777776654
No 46
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.96 E-value=1.9e-28 Score=274.03 Aligned_cols=220 Identities=22% Similarity=0.205 Sum_probs=156.5
Q ss_pred CcccEEEccCccccccCCCcccCCCCCCEEEcCCCcccccCCcccccccCCCEEEcccCccc--ccCCccccCCCCccEE
Q 047190 559 HLLTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLS--GGLPSFFMNGSQLTLM 636 (1025)
Q Consensus 559 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~--~~~p~~~~~l~~L~~L 636 (1025)
++|++|++++|.++ .+|..+. ++|++|++++|.+++..+..+..+++|++|++++|.++ +..+..+..+ +|+.|
T Consensus 102 ~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L 177 (332)
T 2ft3_A 102 RKLQKLYISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYL 177 (332)
T ss_dssp TTCCEEECCSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCC
T ss_pred CCCCEEECCCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEE
Confidence 34455555555554 3333322 45666666666665554455566666666666666664 3555666666 77777
Q ss_pred eCCCCcCccccChhhhhcCCCCcEEEeecCcCcccCcccccccCcccEEEccccccccccCccccCccccccccccCccc
Q 047190 637 DLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPKCFHNFTAMTKEKSSNLSI 716 (1025)
Q Consensus 637 ~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~ 716 (1025)
++++|+++ .+|..+. ++|++|++++|++++..+..+..+++|+.|+|++|++++..|..++.+++|
T Consensus 178 ~l~~n~l~-~l~~~~~---~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L---------- 243 (332)
T 2ft3_A 178 RISEAKLT-GIPKDLP---ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTL---------- 243 (332)
T ss_dssp BCCSSBCS-SCCSSSC---SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTC----------
T ss_pred ECcCCCCC-ccCcccc---CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCC----------
Confidence 77777777 4666543 578888888888887777778888888888888888887777666665555
Q ss_pred ccccccccccccccceeEeecccCCccceeeccccceeEEEcccCCCCCcChhhHhhcccCCeEeccCccccccCCCCCC
Q 047190 717 ISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPRIG 796 (1025)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~ 796 (1025)
+.|+|++|+++ .+|..+..++.|+.|++++|++++..+..|.
T Consensus 244 -------------------------------------~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~ 285 (332)
T 2ft3_A 244 -------------------------------------RELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFC 285 (332)
T ss_dssp -------------------------------------CEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSS
T ss_pred -------------------------------------CEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHcc
Confidence 77888888887 6777788889999999999999988777776
Q ss_pred CC------CCccEEeCCCCcCC--CcCcccccCCCCCCEEECcCCc
Q 047190 797 QL------KSLDFLDLSRNHFF--GGIPSSLSRLRLLSVMDLSYNN 834 (1025)
Q Consensus 797 ~l------~~L~~LdLs~N~l~--g~ip~~l~~l~~L~~Ldls~N~ 834 (1025)
.. .+|+.|++++|.++ +..|..+..++.|+.+++++|+
T Consensus 286 ~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 286 PVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred ccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 53 67899999999998 7788889999999999999885
No 47
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.96 E-value=3.9e-28 Score=271.34 Aligned_cols=219 Identities=24% Similarity=0.229 Sum_probs=140.5
Q ss_pred ccEEEccCccccccCCCcccCCCCCCEEEcCCCcccccCCcccccccCCCEEEcccCccc--ccCCccccCCCCccEEeC
Q 047190 561 LTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLS--GGLPSFFMNGSQLTLMDL 638 (1025)
Q Consensus 561 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~--~~~p~~~~~l~~L~~L~L 638 (1025)
|++|++++|.++ .+|..+. ++|++|++++|.+++..+..+..+++|++|++++|.+. +..+..+.++++|++|++
T Consensus 102 L~~L~Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l 178 (330)
T 1xku_A 102 LERLYLSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRI 178 (330)
T ss_dssp CCEEECCSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEEC
T ss_pred CCEEECCCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEEC
Confidence 444444444444 2232222 45555555555555544444555555555555555553 245556666666677777
Q ss_pred CCCcCccccChhhhhcCCCCcEEEeecCcCcccCcccccccCcccEEEccccccccccCccccCccccccccccCccccc
Q 047190 639 GKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPKCFHNFTAMTKEKSSNLSIIS 718 (1025)
Q Consensus 639 s~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~ 718 (1025)
++|+++ .+|..+ .++|++|++++|++++..|..+..+++|+.|+|++|.+++..|..+..+++|
T Consensus 179 ~~n~l~-~l~~~~---~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L------------ 242 (330)
T 1xku_A 179 ADTNIT-TIPQGL---PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHL------------ 242 (330)
T ss_dssp CSSCCC-SCCSSC---CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTC------------
T ss_pred CCCccc-cCCccc---cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCC------------
Confidence 777666 455544 2567777777777776666777777777777777777776666555555444
Q ss_pred ccccccccccccceeEeecccCCccceeeccccceeEEEcccCCCCCcChhhHhhcccCCeEeccCccccccCCCCCCC-
Q 047190 719 NYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPRIGQ- 797 (1025)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~- 797 (1025)
+.|+|++|+++ .+|..+..++.|++|+|++|++++..+..|..
T Consensus 243 -----------------------------------~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~ 286 (330)
T 1xku_A 243 -----------------------------------RELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPP 286 (330)
T ss_dssp -----------------------------------CEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCS
T ss_pred -----------------------------------CEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCc
Confidence 66777777776 56667777888888888888888777766653
Q ss_pred -----CCCccEEeCCCCcCCC--cCcccccCCCCCCEEECcCCc
Q 047190 798 -----LKSLDFLDLSRNHFFG--GIPSSLSRLRLLSVMDLSYNN 834 (1025)
Q Consensus 798 -----l~~L~~LdLs~N~l~g--~ip~~l~~l~~L~~Ldls~N~ 834 (1025)
...++.|++++|.+.. ..|..+..+..++.+++++|+
T Consensus 287 ~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 287 GYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp SCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred ccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 3678889999998863 567788888889999988885
No 48
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.95 E-value=5.7e-27 Score=261.85 Aligned_cols=248 Identities=21% Similarity=0.244 Sum_probs=141.9
Q ss_pred CCCCceeeccCCcccccccccccccCCcccEEEccCccccccCCCcccCCCCCCEEEcCCCcccccCCcccccccCCCEE
Q 047190 533 PPNVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSL 612 (1025)
Q Consensus 533 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 612 (1025)
+++++.|++++|++++..+... ..+++|++|++++|.+++..|..|.++++|++|++++|.++ .+|..+. ++|++|
T Consensus 51 ~~~l~~L~L~~n~i~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L 126 (330)
T 1xku_A 51 PPDTALLDLQNNKITEIKDGDF-KNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQEL 126 (330)
T ss_dssp CTTCCEEECCSSCCCCBCTTTT-TTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC--TTCCEE
T ss_pred CCCCeEEECCCCcCCEeChhhh-ccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhc--ccccEE
Confidence 3455666666666555433211 23455666666666666555666666666666666666665 3343332 566666
Q ss_pred EcccCcccccCCccccCCCCccEEeCCCCcCcc--ccChhhhhcCCCCcEEEeecCcCcccCcccccccCcccEEEcccc
Q 047190 613 SLYNNSLSGGLPSFFMNGSQLTLMDLGKNGLSG--EIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLN 690 (1025)
Q Consensus 613 ~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g--~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N 690 (1025)
++++|++++..+..|.++++|++|++++|+++. ..+..+. .+++|++|++++|.++. +|..+. ++|+.|++++|
T Consensus 127 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~-~l~~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n 202 (330)
T 1xku_A 127 RVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQ-GMKKLSYIRIADTNITT-IPQGLP--PSLTELHLDGN 202 (330)
T ss_dssp ECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGG-GCTTCCEEECCSSCCCS-CCSSCC--TTCSEEECTTS
T ss_pred ECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhcc-CCCCcCEEECCCCcccc-CCcccc--ccCCEEECCCC
Confidence 666666665555556666666666666666642 3344443 46666666666666653 333332 55666666666
Q ss_pred ccccccCccccCccccccccccCcccccccccccccccccceeEeecccCCccceeeccccceeEEEcccCCCCCcChhh
Q 047190 691 NISGIIPKCFHNFTAMTKEKSSNLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEE 770 (1025)
Q Consensus 691 ~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~~~ip~~ 770 (1025)
++++..|..+..+++| +.|+|++|++++..+..
T Consensus 203 ~l~~~~~~~~~~l~~L-----------------------------------------------~~L~Ls~n~l~~~~~~~ 235 (330)
T 1xku_A 203 KITKVDAASLKGLNNL-----------------------------------------------AKLGLSFNSISAVDNGS 235 (330)
T ss_dssp CCCEECTGGGTTCTTC-----------------------------------------------CEEECCSSCCCEECTTT
T ss_pred cCCccCHHHhcCCCCC-----------------------------------------------CEEECCCCcCceeChhh
Confidence 6665555555544444 55666666666655556
Q ss_pred HhhcccCCeEeccCccccccCCCCCCCCCCccEEeCCCCcCCCcCcccccC------CCCCCEEECcCCccc
Q 047190 771 IMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSRNHFFGGIPSSLSR------LRLLSVMDLSYNNFS 836 (1025)
Q Consensus 771 ~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~------l~~L~~Ldls~N~l~ 836 (1025)
+..+++|++|+|++|+++ .+|..++.+++|++|+|++|++++..+..+.. ...|+.+++++|++.
T Consensus 236 ~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~ 306 (330)
T 1xku_A 236 LANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 306 (330)
T ss_dssp GGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred ccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCccc
Confidence 666666666666666666 55555666666666666666666555554432 245556666666654
No 49
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.95 E-value=1e-27 Score=266.89 Aligned_cols=227 Identities=19% Similarity=0.254 Sum_probs=202.8
Q ss_pred CCcccEEEccCccccccCCCcccCCCCCCEEEcCCCcccccCCcccccccCCCEEEcccCcccccCCccccCCCCccEEe
Q 047190 558 SHLLTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMD 637 (1025)
Q Consensus 558 ~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ 637 (1025)
.+.++.|++++|.++ .+|..+.++++|++|+|++|.++ .+|..++.+++|++|++++|+++ .+|..+.++++|++|+
T Consensus 80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELS 156 (328)
T ss_dssp STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence 367899999999998 77888888999999999999998 88888999999999999999998 7788899999999999
Q ss_pred CCCCcCccccChhhh--------hcCCCCcEEEeecCcCcccCcccccccCcccEEEccccccccccCccccCccccccc
Q 047190 638 LGKNGLSGEIPTWIG--------ESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPKCFHNFTAMTKE 709 (1025)
Q Consensus 638 Ls~N~l~g~ip~~~~--------~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~ 709 (1025)
+++|++.+.+|..+. ..+++|++|+|++|+++ .+|..+..+++|++|+|++|++++ +|..++.+++|
T Consensus 157 L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L--- 231 (328)
T 4fcg_A 157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKL--- 231 (328)
T ss_dssp EEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTC---
T ss_pred CCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCC---
Confidence 999988889998774 14899999999999998 788889999999999999999995 55566666655
Q ss_pred cccCcccccccccccccccccceeEeecccCCccceeeccccceeEEEcccCCCCCcChhhHhhcccCCeEeccCccccc
Q 047190 710 KSSNLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTG 789 (1025)
Q Consensus 710 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g 789 (1025)
+.|+|++|++.+.+|..++.+++|+.|+|++|++.+
T Consensus 232 --------------------------------------------~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~ 267 (328)
T 4fcg_A 232 --------------------------------------------EELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLL 267 (328)
T ss_dssp --------------------------------------------CEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCC
T ss_pred --------------------------------------------CEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchh
Confidence 889999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCccEEeCCCCcCCCcCcccccCCCCCCEEECcCCccc
Q 047190 790 QITPRIGQLKSLDFLDLSRNHFFGGIPSSLSRLRLLSVMDLSYNNFS 836 (1025)
Q Consensus 790 ~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~Ldls~N~l~ 836 (1025)
.+|..++.+++|++|||++|++.|.+|+.+.++++|+.+++..|.+.
T Consensus 268 ~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 268 TLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp BCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred hcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 99999999999999999999999999999999999999999877654
No 50
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.95 E-value=3.6e-27 Score=263.61 Aligned_cols=287 Identities=20% Similarity=0.213 Sum_probs=172.3
Q ss_pred CCcEEEccccccccccCC-CCCCCCCcEEEeecccccCcccccccccCCcceeeccCcccccccchhhhcCCCCCcEEEC
Q 047190 344 SLEWLYLAFNEITGTIPD-LGGFPSLQILSLENNRLTGTISKSIGQLSKLELLLLSGNSLRGVISEALFSNLSSLDTLQL 422 (1025)
Q Consensus 344 ~L~~L~L~~n~l~~~~p~-l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L 422 (1025)
+++.++++++.++ .+|. + .++|++|++++|.+++..+..+..+++|++|++++|.+++..+. .|.++++|++|++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L 109 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEK-AFSPLRKLQKLYI 109 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGG-GSTTCTTCCEEEC
T ss_pred cCCEEECCCCCcc-ccCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHh-HhhCcCCCCEEEC
Confidence 3444444444444 2222 2 23455555555555544444555555555555555555543333 2555555555555
Q ss_pred CCCccccccccCCCCCcccceeeccCCCCCCCCchhhhcCCcccEEEccCCCCCC--chhhhhhhccccceEEEccCccC
Q 047190 423 SDNSLTLKFSHDWTPPFQLFNIFLGSCKIGPRFPKWLQSQNQTVALDVSNAGISD--IVPDWFWDLTNQLYYLNLSNNEM 500 (1025)
Q Consensus 423 s~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~~~p~~l~~~~~L~~L~Ls~n~i~~--~~~~~~~~~~~~L~~L~Ls~N~l 500 (1025)
++|.++......+ .+|++|++++|.+....+..+..+++|+.|++++|.+.. ..+..+... +|++|++++
T Consensus 110 ~~n~l~~l~~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l--~L~~L~l~~--- 181 (332)
T 2ft3_A 110 SKNHLVEIPPNLP---SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL--KLNYLRISE--- 181 (332)
T ss_dssp CSSCCCSCCSSCC---TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC--CCSCCBCCS---
T ss_pred CCCcCCccCcccc---ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC--ccCEEECcC---
Confidence 5555542211111 344444444444444444556666666666666666542 333333222 344444444
Q ss_pred CCCCCCccccccCCCCeeecccCcCccCCCCCCCCCceeeccCCcccccccccccccCCcccEEEccCccccccCCCccc
Q 047190 501 KGKLPDLSRKFDSYGPGIDVSSNQFDGPIPLLPPNVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNLLSGRLPDCWF 580 (1025)
Q Consensus 501 ~~~~p~~~~~~l~~~~~l~ls~n~l~g~~p~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~ 580 (1025)
|++++..... .++|++|++++|.+++..+..+.
T Consensus 182 -------------------------------------------n~l~~l~~~~----~~~L~~L~l~~n~i~~~~~~~l~ 214 (332)
T 2ft3_A 182 -------------------------------------------AKLTGIPKDL----PETLNELHLDHNKIQAIELEDLL 214 (332)
T ss_dssp -------------------------------------------SBCSSCCSSS----CSSCSCCBCCSSCCCCCCTTSST
T ss_pred -------------------------------------------CCCCccCccc----cCCCCEEECCCCcCCccCHHHhc
Confidence 4333321111 14678888888888877778888
Q ss_pred CCCCCCEEEcCCCcccccCCcccccccCCCEEEcccCcccccCCccccCCCCccEEeCCCCcCccccChhhhhc------
Q 047190 581 QFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGKNGLSGEIPTWIGES------ 654 (1025)
Q Consensus 581 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~------ 654 (1025)
.+++|++|++++|.+++..+..+..+++|++|++++|+++ .+|..+..+++|+.|++++|+++ .+|...+..
T Consensus 215 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~-~~~~~~~~~~~~~~~ 292 (332)
T 2ft3_A 215 RYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT-KVGVNDFCPVGFGVK 292 (332)
T ss_dssp TCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCC-BCCTTSSSCSSCCSS
T ss_pred CCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCC-ccChhHccccccccc
Confidence 8888888888888888877778888888888888888888 67777888888888888888888 444333212
Q ss_pred CCCCcEEEeecCcCc--ccCcccccccCcccEEEccccc
Q 047190 655 LPNLVVLSLRSNKFH--GNIPFQLCYLSHIQILDLSLNN 691 (1025)
Q Consensus 655 l~~L~~L~L~~N~l~--~~~p~~l~~l~~L~~L~Ls~N~ 691 (1025)
.+.|+.|++++|++. +..|..+..+++|+.+++++|+
T Consensus 293 ~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 293 RAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp SCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred cccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 366888888888887 6677788888888888888875
No 51
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=2.6e-27 Score=261.63 Aligned_cols=234 Identities=24% Similarity=0.250 Sum_probs=203.4
Q ss_pred CcccEEEccCccccccCCCcccCCCCCCEEEcCCCccccc--CCcccccccCCCEEEcccCcccccCCccccCCCCccEE
Q 047190 559 HLLTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGE--IPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLM 636 (1025)
Q Consensus 559 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~--~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L 636 (1025)
++|++|++++|.++...+..|.++++|++|++++|.++.. .+..+..+++|++|++++|.+++ +|..+..+++|++|
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~-l~~~~~~l~~L~~L 106 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHL 106 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEE-EEEEEETCTTCCEE
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCcccc-ChhhcCCCCCCCEE
Confidence 5688999999999865556688999999999999998743 35667778999999999999984 66678899999999
Q ss_pred eCCCCcCccccChhhhhcCCCCcEEEeecCcCcccCcccccccCcccEEEcccccccc-ccCccccCccccccccccCcc
Q 047190 637 DLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISG-IIPKCFHNFTAMTKEKSSNLS 715 (1025)
Q Consensus 637 ~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~l~~~~~~~~~ 715 (1025)
++++|++++..+...+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++ .+|..+..+++|
T Consensus 107 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L--------- 177 (306)
T 2z66_A 107 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL--------- 177 (306)
T ss_dssp ECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTC---------
T ss_pred ECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCC---------
Confidence 9999999844332333479999999999999999999999999999999999999987 577777776666
Q ss_pred cccccccccccccccceeEeecccCCccceeeccccceeEEEcccCCCCCcChhhHhhcccCCeEeccCccccccCCCCC
Q 047190 716 IISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPRI 795 (1025)
Q Consensus 716 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~ 795 (1025)
+.|||++|++++..|..+..+++|++|+|++|++++..+..+
T Consensus 178 --------------------------------------~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 219 (306)
T 2z66_A 178 --------------------------------------TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPY 219 (306)
T ss_dssp --------------------------------------CEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGG
T ss_pred --------------------------------------CEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhc
Confidence 889999999999999999999999999999999999888889
Q ss_pred CCCCCccEEeCCCCcCCCcCcccccCC-CCCCEEECcCCcccccCC
Q 047190 796 GQLKSLDFLDLSRNHFFGGIPSSLSRL-RLLSVMDLSYNNFSGKIP 840 (1025)
Q Consensus 796 ~~l~~L~~LdLs~N~l~g~ip~~l~~l-~~L~~Ldls~N~l~g~ip 840 (1025)
+.+++|++|||++|++++.+|..+..+ ++|++|++++|+++|..+
T Consensus 220 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~ 265 (306)
T 2z66_A 220 KCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 265 (306)
T ss_dssp TTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGG
T ss_pred cCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccC
Confidence 999999999999999999999999998 599999999999998654
No 52
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=1.6e-26 Score=269.93 Aligned_cols=232 Identities=22% Similarity=0.227 Sum_probs=206.6
Q ss_pred CcccEEEccCccccccCCCcccCCCCCCEEEcCCCcccccCCcccccccCCCEEEcccCcccccCCccccCCCCccEEeC
Q 047190 559 HLLTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDL 638 (1025)
Q Consensus 559 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 638 (1025)
+.+++|+|++|++++..|..|.++++|++|+|++|.+++..+..|..+++|++|+|++|++++..+..|..+++|++|+|
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 154 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL 154 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence 56899999999999888999999999999999999999988899999999999999999999888888999999999999
Q ss_pred CCCcCccccChhhhhcCCCCcEEEeecC-cCcccCcccccccCcccEEEccccccccccCccccCccccccccccCcccc
Q 047190 639 GKNGLSGEIPTWIGESLPNLVVLSLRSN-KFHGNIPFQLCYLSHIQILDLSLNNISGIIPKCFHNFTAMTKEKSSNLSII 717 (1025)
Q Consensus 639 s~N~l~g~ip~~~~~~l~~L~~L~L~~N-~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~ 717 (1025)
++|+++ .+|...+..+++|++|+|++| .+....+..+..+++|++|+|++|++++. | .+..+++
T Consensus 155 ~~N~l~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~------------ 219 (452)
T 3zyi_A 155 RNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-P-NLTPLVG------------ 219 (452)
T ss_dssp CSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-C-CCTTCTT------------
T ss_pred CCCCcc-eeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-c-ccccccc------------
Confidence 999998 666655558999999999995 55544455789999999999999999854 4 2444333
Q ss_pred cccccccccccccceeEeecccCCccceeeccccceeEEEcccCCCCCcChhhHhhcccCCeEeccCccccccCCCCCCC
Q 047190 718 SNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPRIGQ 797 (1025)
Q Consensus 718 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~ 797 (1025)
|+.|||++|++++..|..|.++++|+.|+|++|++++..|..|..
T Consensus 220 -----------------------------------L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 264 (452)
T 3zyi_A 220 -----------------------------------LEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDG 264 (452)
T ss_dssp -----------------------------------CCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTT
T ss_pred -----------------------------------ccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcC
Confidence 389999999999999999999999999999999999999999999
Q ss_pred CCCccEEeCCCCcCCCcCcccccCCCCCCEEECcCCcccccCC
Q 047190 798 LKSLDFLDLSRNHFFGGIPSSLSRLRLLSVMDLSYNNFSGKIP 840 (1025)
Q Consensus 798 l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~Ldls~N~l~g~ip 840 (1025)
+++|+.|||++|++++..+..+..+++|+.|++++|++.+...
T Consensus 265 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~ 307 (452)
T 3zyi_A 265 LASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCD 307 (452)
T ss_dssp CTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTT
T ss_pred CCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCCC
Confidence 9999999999999999888899999999999999999987654
No 53
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.95 E-value=1e-28 Score=299.67 Aligned_cols=39 Identities=13% Similarity=0.088 Sum_probs=21.9
Q ss_pred hhhhCCCCCcEEEccCCCCCCcchhhcCCCCccEEEeec
Q 047190 283 LAFGHMASLRHLDLLSNQLREVPKFLGNMSSLKRLVFSY 321 (1025)
Q Consensus 283 ~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~ 321 (1025)
..+..+++|++|++++|.+.++|..+..+++|++|+++.
T Consensus 214 ~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~ 252 (592)
T 3ogk_B 214 TIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGS 252 (592)
T ss_dssp HHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECB
T ss_pred HHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccc
Confidence 334455556666666655555555555555555555554
No 54
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.94 E-value=1.9e-27 Score=268.29 Aligned_cols=273 Identities=20% Similarity=0.194 Sum_probs=172.9
Q ss_pred ecccCcCccCCCCCCCCCceeeccCCcccccccccccccCCcccEEEccCccccccCCCcccCCCCCCEEEcCCCccccc
Q 047190 519 DVSSNQFDGPIPLLPPNVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGE 598 (1025)
Q Consensus 519 ~ls~n~l~g~~p~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 598 (1025)
+++++.++......++++++|++++|++++..+.. ...+++|++|++++|.+++..|..|.++++|++|++++|++++.
T Consensus 37 ~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 115 (353)
T 2z80_A 37 KGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSD-LQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNL 115 (353)
T ss_dssp ECCSTTCSSCCTTCCTTCCEEECTTSCCCEECTTT-TTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSC
T ss_pred eCCCCCcccccccccccCcEEECCCCcCcccCHHH-hccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcC
Confidence 34444444332233456666666666666543321 12356666677776666666666666666677777776666654
Q ss_pred CCcccccccCCCEEEcccCcccccCC-ccccCCCCccEEeCCCCc-CccccChhhhhcCCCCcEEEeecCcCcccCcccc
Q 047190 599 IPDSMSFLRSIGSLSLYNNSLSGGLP-SFFMNGSQLTLMDLGKNG-LSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQL 676 (1025)
Q Consensus 599 ~p~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~Ls~N~-l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l 676 (1025)
.+..+..+++|++|++++|++++..+ ..+..+++|++|++++|. +.+..|..+. .+++|++|++++|++++..|..+
T Consensus 116 ~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~l 194 (353)
T 2z80_A 116 SSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFA-GLTFLEELEIDASDLQSYEPKSL 194 (353)
T ss_dssp CHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTT-TCCEEEEEEEEETTCCEECTTTT
T ss_pred CHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHcc-CCCCCCEEECCCCCcCccCHHHH
Confidence 44446666666777776666664333 356666667777776663 4422233333 56666666776666666666666
Q ss_pred cccCcccEEEccccccccccCccccCccccccccccCcccccccccccccccccceeEeecccCCccceeeccccceeEE
Q 047190 677 CYLSHIQILDLSLNNISGIIPKCFHNFTAMTKEKSSNLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKII 756 (1025)
Q Consensus 677 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L 756 (1025)
..+++|++|++++|.++...+..+.. ++.|+.|
T Consensus 195 ~~l~~L~~L~l~~n~l~~~~~~~~~~-----------------------------------------------~~~L~~L 227 (353)
T 2z80_A 195 KSIQNVSHLILHMKQHILLLEIFVDV-----------------------------------------------TSSVECL 227 (353)
T ss_dssp TTCSEEEEEEEECSCSTTHHHHHHHH-----------------------------------------------TTTEEEE
T ss_pred hccccCCeecCCCCccccchhhhhhh-----------------------------------------------cccccEE
Confidence 66666666666666664222211222 3344788
Q ss_pred EcccCCCCCcChhhHh---hcccCCeEeccCccccc----cCCCCCCCCCCccEEeCCCCcCCCcCccc-ccCCCCCCEE
Q 047190 757 DLSSNKLGGKVLEEIM---DLVGLVALNLSNNNLTG----QITPRIGQLKSLDFLDLSRNHFFGGIPSS-LSRLRLLSVM 828 (1025)
Q Consensus 757 dLs~N~l~~~ip~~~~---~l~~L~~L~Ls~N~l~g----~ip~~~~~l~~L~~LdLs~N~l~g~ip~~-l~~l~~L~~L 828 (1025)
++++|++++..+..+. ....++.++|++|.+++ .+|..++.+++|++|||++|+++. +|.. +..+++|++|
T Consensus 228 ~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~-i~~~~~~~l~~L~~L 306 (353)
T 2z80_A 228 ELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKS-VPDGIFDRLTSLQKI 306 (353)
T ss_dssp EEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEE
T ss_pred ECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCc-cCHHHHhcCCCCCEE
Confidence 8888888876655443 35667788888888876 367778888889999999999884 5555 5888889999
Q ss_pred ECcCCcccccCCC
Q 047190 829 DLSYNNFSGKIPK 841 (1025)
Q Consensus 829 dls~N~l~g~ip~ 841 (1025)
++++|++.|.+|.
T Consensus 307 ~L~~N~~~~~~~~ 319 (353)
T 2z80_A 307 WLHTNPWDCSCPR 319 (353)
T ss_dssp ECCSSCBCCCHHH
T ss_pred EeeCCCccCcCCC
Confidence 9999998887763
No 55
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.94 E-value=2.3e-26 Score=267.54 Aligned_cols=232 Identities=21% Similarity=0.220 Sum_probs=204.5
Q ss_pred CcccEEEccCccccccCCCcccCCCCCCEEEcCCCcccccCCcccccccCCCEEEcccCcccccCCccccCCCCccEEeC
Q 047190 559 HLLTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDL 638 (1025)
Q Consensus 559 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 638 (1025)
+.++.|+|++|++++..+..|.++++|++|+|++|.+++..+..|..+++|++|+|++|++++..+..|..+++|++|+|
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 143 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL 143 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence 56889999999999888899999999999999999999888889999999999999999999887788999999999999
Q ss_pred CCCcCccccChhhhhcCCCCcEEEeecCc-CcccCcccccccCcccEEEccccccccccCccccCccccccccccCcccc
Q 047190 639 GKNGLSGEIPTWIGESLPNLVVLSLRSNK-FHGNIPFQLCYLSHIQILDLSLNNISGIIPKCFHNFTAMTKEKSSNLSII 717 (1025)
Q Consensus 639 s~N~l~g~ip~~~~~~l~~L~~L~L~~N~-l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~ 717 (1025)
++|+++ .+|...+..+++|++|+|++|+ +....+..+.++++|++|+|++|+++ .+|. +..+++
T Consensus 144 ~~N~i~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~-~~~l~~------------ 208 (440)
T 3zyj_A 144 RNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPN-LTPLIK------------ 208 (440)
T ss_dssp CSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCCC-CTTCSS------------
T ss_pred CCCccc-ccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-cccc-cCCCcc------------
Confidence 999998 5665555579999999999954 54444557899999999999999998 4442 333333
Q ss_pred cccccccccccccceeEeecccCCccceeeccccceeEEEcccCCCCCcChhhHhhcccCCeEeccCccccccCCCCCCC
Q 047190 718 SNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPRIGQ 797 (1025)
Q Consensus 718 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~ 797 (1025)
|+.|||++|++++..|..|.++++|+.|+|++|++++..|..|..
T Consensus 209 -----------------------------------L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 253 (440)
T 3zyj_A 209 -----------------------------------LDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDN 253 (440)
T ss_dssp -----------------------------------CCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTT
T ss_pred -----------------------------------cCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcC
Confidence 489999999999999999999999999999999999999999999
Q ss_pred CCCccEEeCCCCcCCCcCcccccCCCCCCEEECcCCcccccCC
Q 047190 798 LKSLDFLDLSRNHFFGGIPSSLSRLRLLSVMDLSYNNFSGKIP 840 (1025)
Q Consensus 798 l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~Ldls~N~l~g~ip 840 (1025)
+++|+.|||++|++++..+..+..+++|+.|++++|++.+...
T Consensus 254 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~ 296 (440)
T 3zyj_A 254 LQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCD 296 (440)
T ss_dssp CTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSST
T ss_pred CCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCCCC
Confidence 9999999999999999988899999999999999999987643
No 56
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=5.1e-27 Score=256.35 Aligned_cols=229 Identities=20% Similarity=0.131 Sum_probs=195.2
Q ss_pred cEEEccCccccccCCCcccCCCCCCEEEcCCCcccccCCcccccccCCCEEEcccCcccccCCccccCCCCccEEeCCCC
Q 047190 562 TYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGKN 641 (1025)
Q Consensus 562 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N 641 (1025)
+.++.+++.++ .+|..+ .++|++|++++|.+++..+..|..+++|++|++++|.+++..|..|..+++|++|++++|
T Consensus 14 ~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 57888888887 455543 468889999999888877788888889999999999888888888888999999999999
Q ss_pred c-CccccChhhhhcCCCCcEEEeecCcCcccCcccccccCcccEEEccccccccccCccccCccccccccccCccccccc
Q 047190 642 G-LSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPKCFHNFTAMTKEKSSNLSIISNY 720 (1025)
Q Consensus 642 ~-l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~ 720 (1025)
+ +++..|..+. .+++|++|++++|++++..|..+..+++|++|++++|++++..+..++.+++|
T Consensus 91 ~~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-------------- 155 (285)
T 1ozn_A 91 AQLRSVDPATFH-GLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNL-------------- 155 (285)
T ss_dssp TTCCCCCTTTTT-TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC--------------
T ss_pred CCccccCHHHhc-CCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCc--------------
Confidence 7 6633355555 68899999999999988888888889999999999999987766667666665
Q ss_pred ccccccccccceeEeecccCCccceeeccccceeEEEcccCCCCCcChhhHhhcccCCeEeccCccccccCCCCCCCCCC
Q 047190 721 YYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPRIGQLKS 800 (1025)
Q Consensus 721 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~ 800 (1025)
+.|+|++|++++..+..+..+++|+.|+|++|++++.+|..++.+++
T Consensus 156 ---------------------------------~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 202 (285)
T 1ozn_A 156 ---------------------------------THLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGR 202 (285)
T ss_dssp ---------------------------------CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTT
T ss_pred ---------------------------------cEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCccc
Confidence 78999999999877778999999999999999999999999999999
Q ss_pred ccEEeCCCCcCCCcCcccccCCCCCCEEECcCCcccccCCC
Q 047190 801 LDFLDLSRNHFFGGIPSSLSRLRLLSVMDLSYNNFSGKIPK 841 (1025)
Q Consensus 801 L~~LdLs~N~l~g~ip~~l~~l~~L~~Ldls~N~l~g~ip~ 841 (1025)
|+.|||++|++++..|..+..+++|+.|++++|++.+..+.
T Consensus 203 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~ 243 (285)
T 1ozn_A 203 LMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA 243 (285)
T ss_dssp CCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGG
T ss_pred ccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCc
Confidence 99999999999998888899999999999999999987654
No 57
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.94 E-value=3e-27 Score=261.19 Aligned_cols=274 Identities=22% Similarity=0.256 Sum_probs=228.3
Q ss_pred eecccCcCccCCCCCCCCCceeeccCCcccccccccccccCCcccEEEccCcccccc--CCCcccCCCCCCEEEcCCCcc
Q 047190 518 IDVSSNQFDGPIPLLPPNVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNLLSGR--LPDCWFQFDSLAILNLANNSF 595 (1025)
Q Consensus 518 l~ls~n~l~g~~p~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~--~p~~~~~l~~L~~L~Ls~N~l 595 (1025)
++++++.++......+++++.|++++|+++...+. ....+++|++|++++|.++.. .+..+..+++|++|++++|.+
T Consensus 12 l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~i~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i 90 (306)
T 2z66_A 12 IRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHG-VFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGV 90 (306)
T ss_dssp EECCSSCCSSCCSCCCTTCCEEECCSSCCCCCCTT-TTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSE
T ss_pred EEcCCCCcccCCCCCCCCCCEEECCCCccCccCHh-HhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCcc
Confidence 55566555544444567999999999999854433 233578999999999999843 367778899999999999999
Q ss_pred cccCCcccccccCCCEEEcccCcccccCC-ccccCCCCccEEeCCCCcCccccChhhhhcCCCCcEEEeecCcCcc-cCc
Q 047190 596 FGEIPDSMSFLRSIGSLSLYNNSLSGGLP-SFFMNGSQLTLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHG-NIP 673 (1025)
Q Consensus 596 ~~~~p~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~-~~p 673 (1025)
++ +|..+..+++|++|++++|++++..+ ..+..+++|++|++++|++++..|..+. .+++|++|++++|.+.+ .+|
T Consensus 91 ~~-l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~ 168 (306)
T 2z66_A 91 IT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN-GLSSLEVLKMAGNSFQENFLP 168 (306)
T ss_dssp EE-EEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTT-TCTTCCEEECTTCEEGGGEEC
T ss_pred cc-ChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcc-cCcCCCEEECCCCccccccch
Confidence 84 66778999999999999999997765 6899999999999999999977777666 79999999999999987 688
Q ss_pred ccccccCcccEEEccccccccccCccccCccccccccccCcccccccccccccccccceeEeecccCCccceeeccccce
Q 047190 674 FQLCYLSHIQILDLSLNNISGIIPKCFHNFTAMTKEKSSNLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLI 753 (1025)
Q Consensus 674 ~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 753 (1025)
..+..+++|++|++++|++++..|..+..+++|
T Consensus 169 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L----------------------------------------------- 201 (306)
T 2z66_A 169 DIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL----------------------------------------------- 201 (306)
T ss_dssp SCCTTCTTCCEEECTTSCCCEECTTTTTTCTTC-----------------------------------------------
T ss_pred hHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCC-----------------------------------------------
Confidence 899999999999999999998888888877766
Q ss_pred eEEEcccCCCCCcChhhHhhcccCCeEeccCccccccCCCCCCCC-CCccEEeCCCCcCCCcCc--ccccCCCCCCEEEC
Q 047190 754 KIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPRIGQL-KSLDFLDLSRNHFFGGIP--SSLSRLRLLSVMDL 830 (1025)
Q Consensus 754 ~~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l-~~L~~LdLs~N~l~g~ip--~~l~~l~~L~~Ldl 830 (1025)
+.|+|++|++++..+..+..+++|+.|+|++|++++.+|..+..+ ++|++|||++|.+++..+ ....-+...+.+.+
T Consensus 202 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~ 281 (306)
T 2z66_A 202 QVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLV 281 (306)
T ss_dssp CEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBS
T ss_pred CEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhc
Confidence 889999999999988899999999999999999999999999998 499999999999987532 11222333445566
Q ss_pred cCCcccccCCC
Q 047190 831 SYNNFSGKIPK 841 (1025)
Q Consensus 831 s~N~l~g~ip~ 841 (1025)
..+++.|..|.
T Consensus 282 ~~~~~~C~~p~ 292 (306)
T 2z66_A 282 EVERMECATPS 292 (306)
T ss_dssp CGGGCBEEESG
T ss_pred cccccccCCch
Confidence 67777777765
No 58
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.94 E-value=7.1e-27 Score=263.67 Aligned_cols=276 Identities=19% Similarity=0.164 Sum_probs=234.0
Q ss_pred CCceeeccCCcccccccccccccCCcccEEEccCccccccCCCcccCCCCCCEEEcCCCcccccCCcccccccCCCEEEc
Q 047190 535 NVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSL 614 (1025)
Q Consensus 535 ~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 614 (1025)
.....+.+++.++....... ++|++|++++|.+++..+..|.++++|++|++++|.+++..|..|..+++|++|++
T Consensus 32 ~~~~c~~~~~~l~~iP~~~~----~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (353)
T 2z80_A 32 RNGICKGSSGSLNSIPSGLT----EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDL 107 (353)
T ss_dssp TTSEEECCSTTCSSCCTTCC----TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCeEeeCCCCCccccccccc----ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEEC
Confidence 34457888888876544332 57999999999999877779999999999999999999988899999999999999
Q ss_pred ccCcccccCCccccCCCCccEEeCCCCcCccccCh-hhhhcCCCCcEEEeecC-cCcccCcccccccCcccEEEcccccc
Q 047190 615 YNNSLSGGLPSFFMNGSQLTLMDLGKNGLSGEIPT-WIGESLPNLVVLSLRSN-KFHGNIPFQLCYLSHIQILDLSLNNI 692 (1025)
Q Consensus 615 ~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~-~~~~~l~~L~~L~L~~N-~l~~~~p~~l~~l~~L~~L~Ls~N~l 692 (1025)
++|++++..+..|.++++|++|++++|+++ .+|. ..+..+++|++|++++| .+.+..+..+..+++|++|++++|.+
T Consensus 108 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l 186 (353)
T 2z80_A 108 SYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDL 186 (353)
T ss_dssp CSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTC
T ss_pred CCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCc
Confidence 999999877777999999999999999998 6776 44447999999999999 57777788999999999999999999
Q ss_pred ccccCccccCccccccccccCcccccccccccccccccceeEeecccCCccceeeccccceeEEEcccCCCCCcChhhHh
Q 047190 693 SGIIPKCFHNFTAMTKEKSSNLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIM 772 (1025)
Q Consensus 693 ~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~~~ip~~~~ 772 (1025)
++..|..++.+++| +.|++++|+++...+..+.
T Consensus 187 ~~~~~~~l~~l~~L-----------------------------------------------~~L~l~~n~l~~~~~~~~~ 219 (353)
T 2z80_A 187 QSYEPKSLKSIQNV-----------------------------------------------SHLILHMKQHILLLEIFVD 219 (353)
T ss_dssp CEECTTTTTTCSEE-----------------------------------------------EEEEEECSCSTTHHHHHHH
T ss_pred CccCHHHHhccccC-----------------------------------------------CeecCCCCccccchhhhhh
Confidence 99889888877766 8899999999765555567
Q ss_pred hcccCCeEeccCccccccCCCCCC---CCCCccEEeCCCCcCCC----cCcccccCCCCCCEEECcCCcccccCCCC--C
Q 047190 773 DLVGLVALNLSNNNLTGQITPRIG---QLKSLDFLDLSRNHFFG----GIPSSLSRLRLLSVMDLSYNNFSGKIPKG--T 843 (1025)
Q Consensus 773 ~l~~L~~L~Ls~N~l~g~ip~~~~---~l~~L~~LdLs~N~l~g----~ip~~l~~l~~L~~Ldls~N~l~g~ip~~--~ 843 (1025)
.+++|+.|++++|++++..+..+. ....++.++|++|.+++ .+|+.+..+++|+.||+++|+++ .+|.. .
T Consensus 220 ~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~ 298 (353)
T 2z80_A 220 VTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFD 298 (353)
T ss_dssp HTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTT
T ss_pred hcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHh
Confidence 799999999999999988776654 35778999999999987 47889999999999999999999 67764 3
Q ss_pred CCCCcCCCCcCCCCCCCCCC
Q 047190 844 QLQRFGASTYAGNPELCGLP 863 (1025)
Q Consensus 844 ~~~~~~~~~~~gN~~lcg~~ 863 (1025)
.+..+....+.+||+.|.++
T Consensus 299 ~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 299 RLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp TCTTCCEEECCSSCBCCCHH
T ss_pred cCCCCCEEEeeCCCccCcCC
Confidence 55566666789999999774
No 59
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.94 E-value=4.7e-28 Score=293.89 Aligned_cols=381 Identities=12% Similarity=0.035 Sum_probs=204.7
Q ss_pred CCCCCcEEEeecccccCcccccccc-cC-CcceeeccCccc-ccccchhhhcCCCCCcEEECCCCccccc----cccCCC
Q 047190 364 GFPSLQILSLENNRLTGTISKSIGQ-LS-KLELLLLSGNSL-RGVISEALFSNLSSLDTLQLSDNSLTLK----FSHDWT 436 (1025)
Q Consensus 364 ~l~~L~~L~L~~n~l~~~~p~~l~~-l~-~L~~L~L~~N~l-~~~~~~~~~~~l~~L~~L~Ls~n~l~~~----~~~~~~ 436 (1025)
.+++|++|++++|.+++..+..+.. ++ +|++|++++|.- ..........++++|++|++++|.+++. ......
T Consensus 110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~ 189 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ 189 (592)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence 3455555555555555444444443 22 256666655541 1110111123455666666666554332 111112
Q ss_pred CCcccceeeccCCCCC----CCCchhhhcCCcccEEEccCCCCCCchhhhhhhccccceEEEccCccCCCCCCCcccccc
Q 047190 437 PPFQLFNIFLGSCKIG----PRFPKWLQSQNQTVALDVSNAGISDIVPDWFWDLTNQLYYLNLSNNEMKGKLPDLSRKFD 512 (1025)
Q Consensus 437 ~~~~L~~L~L~~~~l~----~~~p~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~l 512 (1025)
..++|+.|++++|.+. ..++..+..+++|+.|++++|.+.+ .+..+... ++|++|+++........+..
T Consensus 190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~-~~L~~L~l~~~~~~~~~~~~----- 262 (592)
T 3ogk_B 190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAA-ANLEEFCGGSLNEDIGMPEK----- 262 (592)
T ss_dssp HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHC-TTCCEEEECBCCCCTTCTTS-----
T ss_pred cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhh-hHHHhhcccccccccchHHH-----
Confidence 2344555555555544 2344556677888888888887776 34555554 37888777653211000000
Q ss_pred CCCCeeecccCcCccCCCCCCCCCceeeccCCcccccccccccccCCcccEEEccCccccccCCCcccCCCCCCEEEcCC
Q 047190 513 SYGPGIDVSSNQFDGPIPLLPPNVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNLLSGRLPDCWFQFDSLAILNLAN 592 (1025)
Q Consensus 513 ~~~~~l~ls~n~l~g~~p~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~ 592 (1025)
+ .....+++|+.|+++++.. +.+|..+..+++|++|++++
T Consensus 263 -----------------~----------------------~~l~~~~~L~~L~l~~~~~-~~l~~~~~~~~~L~~L~Ls~ 302 (592)
T 3ogk_B 263 -----------------Y----------------------MNLVFPRKLCRLGLSYMGP-NEMPILFPFAAQIRKLDLLY 302 (592)
T ss_dssp -----------------S----------------------SCCCCCTTCCEEEETTCCT-TTGGGGGGGGGGCCEEEETT
T ss_pred -----------------H----------------------HHhhccccccccCccccch-hHHHHHHhhcCCCcEEecCC
Confidence 0 0000124456666655422 24555556666677777766
Q ss_pred CcccccCC-cccccccCCCEEEcccCcccccCCccccCCCCccEEeCC-----------CCcCccccChhhhhcCCCCcE
Q 047190 593 NSFFGEIP-DSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLG-----------KNGLSGEIPTWIGESLPNLVV 660 (1025)
Q Consensus 593 N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls-----------~N~l~g~ip~~~~~~l~~L~~ 660 (1025)
|.+++... ..+..+++|++|+++++...+.++..+..+++|++|+++ .|.+++.....+...+++|++
T Consensus 303 ~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~ 382 (592)
T 3ogk_B 303 ALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEY 382 (592)
T ss_dssp CCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSE
T ss_pred CcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeE
Confidence 66544322 224556667777776333333344444566677777777 355554333333335677777
Q ss_pred EEeecCcCcccCcccccc-cCcccEEEcc----ccccccc-----cCccccCccccccccccCccccccccccccccccc
Q 047190 661 LSLRSNKFHGNIPFQLCY-LSHIQILDLS----LNNISGI-----IPKCFHNFTAMTKEKSSNLSIISNYYYNLGLRGML 730 (1025)
Q Consensus 661 L~L~~N~l~~~~p~~l~~-l~~L~~L~Ls----~N~l~~~-----~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~ 730 (1025)
|+++.|.+++..+..+.. +++|+.|+++ .|.+++. ++..+..
T Consensus 383 L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~---------------------------- 434 (592)
T 3ogk_B 383 MAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIG---------------------------- 434 (592)
T ss_dssp EEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHH----------------------------
T ss_pred EEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHh----------------------------
Confidence 777777777666555554 6777777775 4555532 1111222
Q ss_pred ceeEeecccCCccceeeccccceeEEEcccC--CCCCcChhhHhh-cccCCeEeccCccccc-cCCCCCCCCCCccEEeC
Q 047190 731 MPLIFFDTWKGGQYEYKSILGLIKIIDLSSN--KLGGKVLEEIMD-LVGLVALNLSNNNLTG-QITPRIGQLKSLDFLDL 806 (1025)
Q Consensus 731 ~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N--~l~~~ip~~~~~-l~~L~~L~Ls~N~l~g-~ip~~~~~l~~L~~LdL 806 (1025)
++.|+.|+|+++ .+++..+..+.. +++|+.|+|++|++++ .++..+..+++|++|+|
T Consensus 435 -------------------~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l 495 (592)
T 3ogk_B 435 -------------------CKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEM 495 (592)
T ss_dssp -------------------CTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEE
T ss_pred -------------------CCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeec
Confidence 233466777632 366655555554 6777777777777765 33444566677777777
Q ss_pred CCCcCCCc-CcccccCCCCCCEEECcCCccccc
Q 047190 807 SRNHFFGG-IPSSLSRLRLLSVMDLSYNNFSGK 838 (1025)
Q Consensus 807 s~N~l~g~-ip~~l~~l~~L~~Ldls~N~l~g~ 838 (1025)
++|.+++. ++..+..+++|++|++++|++++.
T Consensus 496 ~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 496 RGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp ESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred cCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence 77777654 333445577777777777776643
No 60
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.94 E-value=1e-25 Score=262.15 Aligned_cols=250 Identities=21% Similarity=0.200 Sum_probs=218.7
Q ss_pred ccEEEccCccccccCCCcccCCCCCCEEEcCCCcccccCCcccccccCCCEEEcccCcccccCCccccCCCCccEEeCCC
Q 047190 561 LTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGK 640 (1025)
Q Consensus 561 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~ 640 (1025)
...++.+++.++ .+|..+. ++++.|+|++|++++..+..|..+++|++|+|++|++++..+..|.++++|++|+|++
T Consensus 45 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~ 121 (440)
T 3zyj_A 45 FSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD 121 (440)
T ss_dssp SCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred CCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence 567888998888 6776654 6899999999999999999999999999999999999999889999999999999999
Q ss_pred CcCccccChhhhhcCCCCcEEEeecCcCcccCcccccccCcccEEEccccccccccC-ccccCccccccccccCcccccc
Q 047190 641 NGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIP-KCFHNFTAMTKEKSSNLSIISN 719 (1025)
Q Consensus 641 N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~l~~~~~~~~~~~~~ 719 (1025)
|+++ .+|...+..+++|++|+|++|++.+..+..+..+++|+.|+|++|+..+.+| ..|.++++|
T Consensus 122 n~l~-~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L------------- 187 (440)
T 3zyj_A 122 NRLT-TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNL------------- 187 (440)
T ss_dssp SCCS-SCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSC-------------
T ss_pred CcCC-eeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhccccc-------------
Confidence 9999 6666544479999999999999998888899999999999999965544444 456666655
Q ss_pred cccccccccccceeEeecccCCccceeeccccceeEEEcccCCCCCcChhhHhhcccCCeEeccCccccccCCCCCCCCC
Q 047190 720 YYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPRIGQLK 799 (1025)
Q Consensus 720 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~ 799 (1025)
+.|+|++|+++.. | .+..+++|+.|+|++|++++..|..|.+++
T Consensus 188 ----------------------------------~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 231 (440)
T 3zyj_A 188 ----------------------------------RYLNLAMCNLREI-P-NLTPLIKLDELDLSGNHLSAIRPGSFQGLM 231 (440)
T ss_dssp ----------------------------------CEEECTTSCCSSC-C-CCTTCSSCCEEECTTSCCCEECTTTTTTCT
T ss_pred ----------------------------------CeecCCCCcCccc-c-ccCCCcccCEEECCCCccCccChhhhccCc
Confidence 8999999999854 4 488999999999999999999999999999
Q ss_pred CccEEeCCCCcCCCcCcccccCCCCCCEEECcCCcccccCCCC-CCCCCcCCCCcCCCCCCCCCC
Q 047190 800 SLDFLDLSRNHFFGGIPSSLSRLRLLSVMDLSYNNFSGKIPKG-TQLQRFGASTYAGNPELCGLP 863 (1025)
Q Consensus 800 ~L~~LdLs~N~l~g~ip~~l~~l~~L~~Ldls~N~l~g~ip~~-~~~~~~~~~~~~gN~~lcg~~ 863 (1025)
+|+.|+|++|++++..|..|..+++|+.||+++|++++..+.. ..+..+....+.|||+.|+|.
T Consensus 232 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~ 296 (440)
T 3zyj_A 232 HLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCD 296 (440)
T ss_dssp TCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSST
T ss_pred cCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCCCC
Confidence 9999999999999999999999999999999999999765543 345555566689999999884
No 61
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=1.5e-26 Score=252.70 Aligned_cols=235 Identities=22% Similarity=0.221 Sum_probs=185.6
Q ss_pred CcccEEEccCccccccCCCcccCCCCCCEEEcCCCcccccCCcccccccCCCEEEcccCc-ccccCCccccCCCCccEEe
Q 047190 559 HLLTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNS-LSGGLPSFFMNGSQLTLMD 637 (1025)
Q Consensus 559 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~-l~~~~p~~~~~l~~L~~L~ 637 (1025)
++|++|++++|.+++..+..|..+++|++|++++|.+++..|..+..+++|++|++++|+ +.+..|..|..+++|++|+
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~ 111 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH 111 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEE
Confidence 567888888888887777778888888888888888888778888888888888888887 7766677888888888888
Q ss_pred CCCCcCccccChhhhhcCCCCcEEEeecCcCcccCcccccccCcccEEEccccccccccCccccCccccccccccCcccc
Q 047190 638 LGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPKCFHNFTAMTKEKSSNLSII 717 (1025)
Q Consensus 638 Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~ 717 (1025)
+++|++++..|..+. .+++|++|++++|++++..+..+..+++|++|+|++|++++..+..+..+++|
T Consensus 112 l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L----------- 179 (285)
T 1ozn_A 112 LDRCGLQELGPGLFR-GLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSL----------- 179 (285)
T ss_dssp CTTSCCCCCCTTTTT-TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTC-----------
T ss_pred CCCCcCCEECHhHhh-CCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCcccc-----------
Confidence 888888855555555 68888888888888887777778888888888888888886666666666555
Q ss_pred cccccccccccccceeEeecccCCccceeeccccceeEEEcccCCCCCcChhhHhhcccCCeEeccCccccccCCCCCCC
Q 047190 718 SNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPRIGQ 797 (1025)
Q Consensus 718 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~ 797 (1025)
+.|+|++|++++..|..+.++++|+.|+|++|++++..+..++.
T Consensus 180 ------------------------------------~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 223 (285)
T 1ozn_A 180 ------------------------------------DRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAP 223 (285)
T ss_dssp ------------------------------------CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTT
T ss_pred ------------------------------------CEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHccc
Confidence 77888888888888888888888999999999998877777888
Q ss_pred CCCccEEeCCCCcCCCcCcccccCCCCCCEEECcCCcccccCCCC
Q 047190 798 LKSLDFLDLSRNHFFGGIPSSLSRLRLLSVMDLSYNNFSGKIPKG 842 (1025)
Q Consensus 798 l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~Ldls~N~l~g~ip~~ 842 (1025)
+++|+.|+|++|.+++..+.. .-...++.++.+.|.+.|..|..
T Consensus 224 l~~L~~L~l~~N~~~c~~~~~-~~~~~l~~~~~~~~~~~c~~p~~ 267 (285)
T 1ozn_A 224 LRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQR 267 (285)
T ss_dssp CTTCCEEECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEEESGG
T ss_pred CcccCEEeccCCCccCCCCcH-HHHHHHHhcccccCccccCCchH
Confidence 889999999999888654421 11123445557788888888863
No 62
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.94 E-value=1.1e-27 Score=265.10 Aligned_cols=246 Identities=20% Similarity=0.176 Sum_probs=161.0
Q ss_pred CCCceeeccCCcccccccccccccCCcccEEEccCcccc-ccCCCccc-------CCCCCCEEEcCCCcccccCCccc--
Q 047190 534 PNVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNLLS-GRLPDCWF-------QFDSLAILNLANNSFFGEIPDSM-- 603 (1025)
Q Consensus 534 ~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~N~l~-~~~p~~~~-------~l~~L~~L~Ls~N~l~~~~p~~~-- 603 (1025)
.+|+.|++++|.+ .++.... ..|+.|++++|.++ +.+|..+. ++++|++|++++|.+++.+|..+
T Consensus 43 ~~L~~l~l~~n~l--~~p~~~~---~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 117 (312)
T 1wwl_A 43 RSLEYLLKRVDTE--ADLGQFT---DIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLE 117 (312)
T ss_dssp EECTTHHHHCCTT--CCCHHHH---HHHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSS
T ss_pred CCceeEeeccccc--ccHHHHH---HHHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHH
Confidence 3456666666666 2332111 22666677777663 34554444 56677777777777776666655
Q ss_pred ccccCCCEEEcccCcccccCCccccCC-----CCccEEeCCCCcCccccChhhhhcCCCCcEEEeecCcCccc--Ccccc
Q 047190 604 SFLRSIGSLSLYNNSLSGGLPSFFMNG-----SQLTLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGN--IPFQL 676 (1025)
Q Consensus 604 ~~l~~L~~L~L~~N~l~~~~p~~~~~l-----~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~--~p~~l 676 (1025)
..+++|++|++++|++++. |..+..+ ++|++|++++|++++..|..+. .+++|++|+|++|++.+. .|..+
T Consensus 118 ~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~ 195 (312)
T 1wwl_A 118 ATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVR-VFPALSTLDLSDNPELGERGLISAL 195 (312)
T ss_dssp CCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCC-CCSSCCEEECCSCTTCHHHHHHHHS
T ss_pred hcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhc-cCCCCCEEECCCCCcCcchHHHHHH
Confidence 6667777777777777665 5555555 6777777777777644445554 577777777777776654 23333
Q ss_pred --cccCcccEEEccccccccc--cC-ccccCccccccccccCcccccccccccccccccceeEeecccCCccceeecccc
Q 047190 677 --CYLSHIQILDLSLNNISGI--IP-KCFHNFTAMTKEKSSNLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILG 751 (1025)
Q Consensus 677 --~~l~~L~~L~Ls~N~l~~~--~p-~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 751 (1025)
..+++|++|+|++|++++. ++ ..+..+ +
T Consensus 196 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l-----------------------------------------------~ 228 (312)
T 1wwl_A 196 CPLKFPTLQVLALRNAGMETPSGVCSALAAAR-----------------------------------------------V 228 (312)
T ss_dssp CTTSCTTCCEEECTTSCCCCHHHHHHHHHHTT-----------------------------------------------C
T ss_pred HhccCCCCCEEECCCCcCcchHHHHHHHHhcC-----------------------------------------------C
Confidence 6677777777777777621 11 111222 2
Q ss_pred ceeEEEcccCCCCCcCh-hhHhhcccCCeEeccCccccccCCCCCCCCCCccEEeCCCCcCCCcCcccccCCCCCCEEEC
Q 047190 752 LIKIIDLSSNKLGGKVL-EEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSRNHFFGGIPSSLSRLRLLSVMDL 830 (1025)
Q Consensus 752 ~l~~LdLs~N~l~~~ip-~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~Ldl 830 (1025)
.|+.|||++|++++.+| ..+..+++|++|+|++|+|+ .+|..+. ++|++|||++|++++. |. +..+++|++|++
T Consensus 229 ~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L 303 (312)
T 1wwl_A 229 QLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSL 303 (312)
T ss_dssp CCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEEC
T ss_pred CCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEec
Confidence 33777777887777665 44556788888888888888 6777776 7888888888888876 55 888888888888
Q ss_pred cCCccccc
Q 047190 831 SYNNFSGK 838 (1025)
Q Consensus 831 s~N~l~g~ 838 (1025)
++|++++.
T Consensus 304 ~~N~l~~~ 311 (312)
T 1wwl_A 304 KGNPFLDS 311 (312)
T ss_dssp TTCTTTCC
T ss_pred cCCCCCCC
Confidence 88888763
No 63
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.93 E-value=2.3e-25 Score=260.08 Aligned_cols=247 Identities=23% Similarity=0.211 Sum_probs=218.6
Q ss_pred eecccCcCccCCCCCCCCCceeeccCCcccccccccccccCCcccEEEccCccccccCCCcccCCCCCCEEEcCCCcccc
Q 047190 518 IDVSSNQFDGPIPLLPPNVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFG 597 (1025)
Q Consensus 518 l~ls~n~l~g~~p~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 597 (1025)
+++++..++......+++++.|++++|++++..+... ..+++|++|+|++|.+++..+..|.++++|++|+|++|.+++
T Consensus 59 v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~-~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~ 137 (452)
T 3zyi_A 59 VVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTF-RHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTV 137 (452)
T ss_dssp EECCSSCCSSCCSCCCTTCSEEECCSSCCCEECTTTT-TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSB
T ss_pred EEECCCCcCccCCCCCCCccEEECcCCcCceECHHHc-CCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCc
Confidence 5555555554444456889999999999988655433 357899999999999999999999999999999999999998
Q ss_pred cCCcccccccCCCEEEcccCcccccCCccccCCCCccEEeCCCCcCccccChhhhhcCCCCcEEEeecCcCcccCccccc
Q 047190 598 EIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLC 677 (1025)
Q Consensus 598 ~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~ 677 (1025)
..+..|..+++|++|++++|++++..+..|.++++|+.|++++|...+.+|...+..+++|++|+|++|++++. | .+.
T Consensus 138 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~-~~~ 215 (452)
T 3zyi_A 138 IPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-P-NLT 215 (452)
T ss_dssp CCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-C-CCT
T ss_pred cChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-c-ccc
Confidence 88888999999999999999999888889999999999999996555588876666899999999999999864 4 588
Q ss_pred ccCcccEEEccccccccccCccccCccccccccccCcccccccccccccccccceeEeecccCCccceeeccccceeEEE
Q 047190 678 YLSHIQILDLSLNNISGIIPKCFHNFTAMTKEKSSNLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIID 757 (1025)
Q Consensus 678 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Ld 757 (1025)
.+++|+.|+|++|++++..|..|.++++| +.|+
T Consensus 216 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L-----------------------------------------------~~L~ 248 (452)
T 3zyi_A 216 PLVGLEELEMSGNHFPEIRPGSFHGLSSL-----------------------------------------------KKLW 248 (452)
T ss_dssp TCTTCCEEECTTSCCSEECGGGGTTCTTC-----------------------------------------------CEEE
T ss_pred ccccccEEECcCCcCcccCcccccCccCC-----------------------------------------------CEEE
Confidence 99999999999999999999888887776 8899
Q ss_pred cccCCCCCcChhhHhhcccCCeEeccCccccccCCCCCCCCCCccEEeCCCCcCCCc
Q 047190 758 LSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSRNHFFGG 814 (1025)
Q Consensus 758 Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ 814 (1025)
|++|++++..|..|.++++|+.|+|++|+|++..+..+..+++|+.|+|++|.+...
T Consensus 249 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~Cd 305 (452)
T 3zyi_A 249 VMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCD 305 (452)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECS
T ss_pred eCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCC
Confidence 999999999999999999999999999999999889999999999999999988643
No 64
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.92 E-value=1.9e-24 Score=234.69 Aligned_cols=228 Identities=20% Similarity=0.158 Sum_probs=175.0
Q ss_pred EEEccCccccccCCCcccCCCCCCEEEcCCCcccccCCcccccccCCCEEEcccCcccccCCccccCCCCccEEeCCCCc
Q 047190 563 YLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGKNG 642 (1025)
Q Consensus 563 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~ 642 (1025)
..+..+..++ .+|..+. ++|++|++++|.+++..+..+..+++|++|++++|++++..+..|.++++|++|++++|+
T Consensus 11 ~~~c~~~~l~-~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 87 (276)
T 2z62_A 11 TYQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87 (276)
T ss_dssp EEECTTSCCS-SCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred eEEecCCCcc-ccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc
Confidence 3445555555 4555442 467777777777777666677777777888887777777776777777888888888888
Q ss_pred CccccChhhhhcCCCCcEEEeecCcCcccCcccccccCcccEEEccccccccc-cCccccCccccccccccCcccccccc
Q 047190 643 LSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGI-IPKCFHNFTAMTKEKSSNLSIISNYY 721 (1025)
Q Consensus 643 l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~l~~~~~~~~~~~~~~~ 721 (1025)
+++..|..+. .+++|++|++++|++.+..+..+..+++|++|++++|.+++. +|..++.+++|
T Consensus 88 l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L--------------- 151 (276)
T 2z62_A 88 IQSLALGAFS-GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNL--------------- 151 (276)
T ss_dssp CCEECTTTTT-TCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTC---------------
T ss_pred cCccChhhhc-CCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCC---------------
Confidence 7754445554 678888888888888777666777888888888888888763 57766666555
Q ss_pred cccccccccceeEeecccCCccceeeccccceeEEEcccCCCCCcChhhHhhcccCC----eEeccCccccccCCCCCCC
Q 047190 722 YNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLV----ALNLSNNNLTGQITPRIGQ 797 (1025)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~~~ip~~~~~l~~L~----~L~Ls~N~l~g~ip~~~~~ 797 (1025)
+.|+|++|++++..+..+..++.|+ .|++++|.+++..+..+..
T Consensus 152 --------------------------------~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~ 199 (276)
T 2z62_A 152 --------------------------------EHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE 199 (276)
T ss_dssp --------------------------------CEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCS
T ss_pred --------------------------------CEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCC
Confidence 7788888888887777787777777 8999999999877766655
Q ss_pred CCCccEEeCCCCcCCCcCcccccCCCCCCEEECcCCcccccCCCC
Q 047190 798 LKSLDFLDLSRNHFFGGIPSSLSRLRLLSVMDLSYNNFSGKIPKG 842 (1025)
Q Consensus 798 l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~Ldls~N~l~g~ip~~ 842 (1025)
.+|+.|+|++|++++..+..+..+++|+.|++++|++.|.+|..
T Consensus 200 -~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~l 243 (276)
T 2z62_A 200 -IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 243 (276)
T ss_dssp -CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTTT
T ss_pred -CcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCCch
Confidence 48999999999999888888899999999999999999988754
No 65
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.92 E-value=2.1e-26 Score=254.74 Aligned_cols=244 Identities=25% Similarity=0.327 Sum_probs=204.5
Q ss_pred CCcccEEEccCccccccCCCcccCCCCCCEEEcCCCcc-cccCCcccc-------cccCCCEEEcccCcccccCCccc--
Q 047190 558 SHLLTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSF-FGEIPDSMS-------FLRSIGSLSLYNNSLSGGLPSFF-- 627 (1025)
Q Consensus 558 ~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l-~~~~p~~~~-------~l~~L~~L~L~~N~l~~~~p~~~-- 627 (1025)
.++|+.|++++|.+ .+|..+... |+.|++++|.+ ...+|..+. .+++|++|++++|++++.+|..+
T Consensus 42 ~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 117 (312)
T 1wwl_A 42 GRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLE 117 (312)
T ss_dssp EEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSS
T ss_pred CCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHH
Confidence 46799999999999 678766655 99999999999 456676665 68999999999999999999876
Q ss_pred cCCCCccEEeCCCCcCccccChhhhhcC-----CCCcEEEeecCcCcccCcccccccCcccEEEcccccccccc--Cccc
Q 047190 628 MNGSQLTLMDLGKNGLSGEIPTWIGESL-----PNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGII--PKCF 700 (1025)
Q Consensus 628 ~~l~~L~~L~Ls~N~l~g~ip~~~~~~l-----~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~--p~~~ 700 (1025)
..+++|++|++++|++++. |..+. .+ ++|++|+|++|++.+..|..+..+++|++|+|++|++.+.+ |..+
T Consensus 118 ~~l~~L~~L~Ls~N~l~~~-~~~~~-~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 195 (312)
T 1wwl_A 118 ATGPDLNILNLRNVSWATR-DAWLA-ELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISAL 195 (312)
T ss_dssp CCSCCCSEEEEESCBCSSS-SSHHH-HHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHS
T ss_pred hcCCCccEEEccCCCCcch-hHHHH-HHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHH
Confidence 8999999999999999965 87776 45 99999999999999998899999999999999999988763 3332
Q ss_pred --cCccccccccccCcccccccccccccccccceeEeecccCCccceeeccccceeEEEcccCCCCC--cCh-hhHhhcc
Q 047190 701 --HNFTAMTKEKSSNLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGG--KVL-EEIMDLV 775 (1025)
Q Consensus 701 --~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~~--~ip-~~~~~l~ 775 (1025)
+.+++| +.|+|++|++++ .++ ..+.+++
T Consensus 196 ~~~~l~~L-----------------------------------------------~~L~L~~N~l~~~~~~~~~~~~~l~ 228 (312)
T 1wwl_A 196 CPLKFPTL-----------------------------------------------QVLALRNAGMETPSGVCSALAAARV 228 (312)
T ss_dssp CTTSCTTC-----------------------------------------------CEEECTTSCCCCHHHHHHHHHHTTC
T ss_pred HhccCCCC-----------------------------------------------CEEECCCCcCcchHHHHHHHHhcCC
Confidence 444444 899999999994 333 4456889
Q ss_pred cCCeEeccCccccccCC-CCCCCCCCccEEeCCCCcCCCcCcccccCCCCCCEEECcCCcccccCCCCCCCCCcCCCCcC
Q 047190 776 GLVALNLSNNNLTGQIT-PRIGQLKSLDFLDLSRNHFFGGIPSSLSRLRLLSVMDLSYNNFSGKIPKGTQLQRFGASTYA 854 (1025)
Q Consensus 776 ~L~~L~Ls~N~l~g~ip-~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~Ldls~N~l~g~ip~~~~~~~~~~~~~~ 854 (1025)
+|++|+|++|++++.+| ..+..+++|++|||++|+++ .+|..+. ++|++||+++|++++. |....+..+....+.
T Consensus 229 ~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~~~~l~~L~~L~L~ 304 (312)
T 1wwl_A 229 QLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PSPDELPQVGNLSLK 304 (312)
T ss_dssp CCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CCTTTSCEEEEEECT
T ss_pred CCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hhHhhCCCCCEEecc
Confidence 99999999999999886 56777899999999999999 7888877 8999999999999987 665555555555577
Q ss_pred CCCC
Q 047190 855 GNPE 858 (1025)
Q Consensus 855 gN~~ 858 (1025)
+|+.
T Consensus 305 ~N~l 308 (312)
T 1wwl_A 305 GNPF 308 (312)
T ss_dssp TCTT
T ss_pred CCCC
Confidence 7754
No 66
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=5.5e-26 Score=266.77 Aligned_cols=220 Identities=23% Similarity=0.231 Sum_probs=175.6
Q ss_pred CcccEEEccCccccccCCCcccCCCCCCEEEcCCCcccccCCcccccccCCCEEEcccCcccccCCccccCCCCccEEeC
Q 047190 559 HLLTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDL 638 (1025)
Q Consensus 559 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 638 (1025)
++|+.|+|++|.+++..|..|..+++|++|+|++|.+++..| +..+++|++|++++|.+++..+ .++|+.|++
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~L 106 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETLHA 106 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEEC
T ss_pred CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEEEC
Confidence 568888888888888777888888888888888888887665 7888888888888888876433 378888999
Q ss_pred CCCcCccccChhhhhcCCCCcEEEeecCcCcccCcccccccCcccEEEccccccccccCcccc-CccccccccccCcccc
Q 047190 639 GKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPKCFH-NFTAMTKEKSSNLSII 717 (1025)
Q Consensus 639 s~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~-~l~~l~~~~~~~~~~~ 717 (1025)
++|.+++..+. .+++|++|+|++|.+++..|..+..+++|+.|+|++|.+++.+|..+. .++.|
T Consensus 107 ~~N~l~~~~~~----~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L----------- 171 (487)
T 3oja_A 107 ANNNISRVSCS----RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL----------- 171 (487)
T ss_dssp CSSCCCCEEEC----CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTC-----------
T ss_pred cCCcCCCCCcc----ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcc-----------
Confidence 99888854432 367888899999998888888888888899999999988887777664 44444
Q ss_pred cccccccccccccceeEeecccCCccceeeccccceeEEEcccCCCCCcChhhHhhcccCCeEeccCccccccCCCCCCC
Q 047190 718 SNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPRIGQ 797 (1025)
Q Consensus 718 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~ 797 (1025)
+.|+|++|.+++..+ +..++.|+.|+|++|.|++.+|. ++.
T Consensus 172 ------------------------------------~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~~-~~~ 212 (487)
T 3oja_A 172 ------------------------------------EHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFMGPE-FQS 212 (487)
T ss_dssp ------------------------------------CEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEECGG-GGG
T ss_pred ------------------------------------cEEecCCCccccccc--cccCCCCCEEECCCCCCCCCCHh-HcC
Confidence 788888888887633 33588888888888888875554 888
Q ss_pred CCCccEEeCCCCcCCCcCcccccCCCCCCEEECcCCccc-ccCC
Q 047190 798 LKSLDFLDLSRNHFFGGIPSSLSRLRLLSVMDLSYNNFS-GKIP 840 (1025)
Q Consensus 798 l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~Ldls~N~l~-g~ip 840 (1025)
+++|+.|||++|.+++ +|..+..++.|+.|++++|++. +.+|
T Consensus 213 l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~ 255 (487)
T 3oja_A 213 AAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLR 255 (487)
T ss_dssp GTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHH
T ss_pred CCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchH
Confidence 8888888888888886 6777888888888888888887 4443
No 67
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.92 E-value=4.5e-24 Score=255.28 Aligned_cols=224 Identities=25% Similarity=0.272 Sum_probs=163.6
Q ss_pred CCCCCceeeccCCcccccccccccccCCcccEEEccCccccccCCCcccCCCCCCEEEcCCCcccccCCcccccccCCCE
Q 047190 532 LPPNVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGS 611 (1025)
Q Consensus 532 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 611 (1025)
.+++|++|++++|++++... .+++|++|++++|.+++ +|. .+++|+.|++++|++++ +|.. +++|++
T Consensus 79 ~l~~L~~L~Ls~N~l~~lp~-----~l~~L~~L~Ls~N~l~~-l~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~ 145 (622)
T 3g06_A 79 LPPELRTLEVSGNQLTSLPV-----LPPGLLELSIFSNPLTH-LPA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQE 145 (622)
T ss_dssp CCTTCCEEEECSCCCSCCCC-----CCTTCCEEEECSCCCCC-CCC---CCTTCCEEECCSSCCSC-CCCC---CTTCCE
T ss_pred cCCCCCEEEcCCCcCCcCCC-----CCCCCCEEECcCCcCCC-CCC---CCCCcCEEECCCCCCCc-CCCC---CCCCCE
Confidence 45667777777777664332 34678888888888775 343 46778888888888775 4443 377888
Q ss_pred EEcccCcccccCCccccCCCCccEEeCCCCcCccccChhhhhcCCCCcEEEeecCcCcccCcccccccCcccEEEccccc
Q 047190 612 LSLYNNSLSGGLPSFFMNGSQLTLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNN 691 (1025)
Q Consensus 612 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 691 (1025)
|++++|++++ +|. ...+|+.|++++|+++ .+| ..+++|+.|++++|++++ +|.. +++|+.|++++|.
T Consensus 146 L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~-~l~----~~~~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~ 212 (622)
T 3g06_A 146 LSVSDNQLAS-LPA---LPSELCKLWAYNNQLT-SLP----MLPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNR 212 (622)
T ss_dssp EECCSSCCSC-CCC---CCTTCCEEECCSSCCS-CCC----CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSC
T ss_pred EECcCCcCCC-cCC---ccCCCCEEECCCCCCC-CCc----ccCCCCcEEECCCCCCCC-CCCc---cchhhEEECcCCc
Confidence 8888888875 333 3467888888888887 566 246788888888888875 4432 4678888888888
Q ss_pred cccccCccccCccccccccccCcccccccccccccccccceeEeecccCCccceeeccccceeEEEcccCCCCCcChhhH
Q 047190 692 ISGIIPKCFHNFTAMTKEKSSNLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEI 771 (1025)
Q Consensus 692 l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~~~ip~~~ 771 (1025)
++ .+|..+ + .|+.|+|++|++++ +|
T Consensus 213 l~-~l~~~~---~-----------------------------------------------~L~~L~Ls~N~L~~-lp--- 237 (622)
T 3g06_A 213 LT-SLPALP---S-----------------------------------------------GLKELIVSGNRLTS-LP--- 237 (622)
T ss_dssp CS-SCCCCC---T-----------------------------------------------TCCEEECCSSCCSC-CC---
T ss_pred cc-ccCCCC---C-----------------------------------------------CCCEEEccCCccCc-CC---
Confidence 77 333221 2 23788899998887 44
Q ss_pred hhcccCCeEeccCccccccCCCCCCCCCCccEEeCCCCcCCCcCcccccCCCCCCEEECcCCcccccCCC
Q 047190 772 MDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSRNHFFGGIPSSLSRLRLLSVMDLSYNNFSGKIPK 841 (1025)
Q Consensus 772 ~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~Ldls~N~l~g~ip~ 841 (1025)
..+++|+.|+|++|+|++ +|. .+++|+.|+|++|+|+ .+|..+..+++|+.|++++|+++|.+|.
T Consensus 238 ~~l~~L~~L~Ls~N~L~~-lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~ 302 (622)
T 3g06_A 238 VLPSELKELMVSGNRLTS-LPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ 302 (622)
T ss_dssp CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHH
T ss_pred CCCCcCcEEECCCCCCCc-CCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHH
Confidence 556789999999999984 555 5678899999999998 6788899999999999999999988775
No 68
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.92 E-value=3.5e-26 Score=253.58 Aligned_cols=221 Identities=25% Similarity=0.240 Sum_probs=156.2
Q ss_pred CcccEEEccCccccccCCCcccCCCCCCEEEcCCCcccccCCcccccccCCCEEEcccCcccccCCccccCCCCccEEeC
Q 047190 559 HLLTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDL 638 (1025)
Q Consensus 559 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 638 (1025)
++|++|++++|.+++..+ +..+++|++|++++|.+++.. ..++|++|++++|++++..+.. +++|++|++
T Consensus 58 ~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l 127 (317)
T 3o53_A 58 TKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETLHAANNNISRVSCSR---GQGKKNIYL 127 (317)
T ss_dssp TTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEE-----ECTTCCEEECCSSCCSEEEECC---CSSCEEEEC
T ss_pred CcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccccc-----CCCCcCEEECCCCccCCcCccc---cCCCCEEEC
Confidence 456666666666654443 666666677777766665432 2366777777777776554433 456777777
Q ss_pred CCCcCccccChhhhhcCCCCcEEEeecCcCcccCccccc-ccCcccEEEccccccccccCccccCccccccccccCcccc
Q 047190 639 GKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLC-YLSHIQILDLSLNNISGIIPKCFHNFTAMTKEKSSNLSII 717 (1025)
Q Consensus 639 s~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~-~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~ 717 (1025)
++|++++..|..+. .+++|++|+|++|++++..+..+. .+++|++|+|++|.+++..+. ..+
T Consensus 128 ~~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~--~~l-------------- 190 (317)
T 3o53_A 128 ANNKITMLRDLDEG-CRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQ--VVF-------------- 190 (317)
T ss_dssp CSSCCCSGGGBCTG-GGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECC--CCC--------------
T ss_pred CCCCCCCccchhhh-ccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccccc--ccc--------------
Confidence 77777744444444 577777777777777776666653 677788888888877754111 112
Q ss_pred cccccccccccccceeEeecccCCccceeeccccceeEEEcccCCCCCcChhhHhhcccCCeEeccCccccccCCCCCCC
Q 047190 718 SNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPRIGQ 797 (1025)
Q Consensus 718 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~ 797 (1025)
+.|+.|||++|++++..+ .+..+++|+.|+|++|++++ +|..++.
T Consensus 191 ---------------------------------~~L~~L~Ls~N~l~~l~~-~~~~l~~L~~L~L~~N~l~~-l~~~~~~ 235 (317)
T 3o53_A 191 ---------------------------------AKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRF 235 (317)
T ss_dssp ---------------------------------TTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCC
T ss_pred ---------------------------------ccCCEEECCCCcCCcchh-hhcccCcccEEECcCCcccc-hhhHhhc
Confidence 233788888888886544 48889999999999999994 6888999
Q ss_pred CCCccEEeCCCCcCC-CcCcccccCCCCCCEEECc-CCcccccCCC
Q 047190 798 LKSLDFLDLSRNHFF-GGIPSSLSRLRLLSVMDLS-YNNFSGKIPK 841 (1025)
Q Consensus 798 l~~L~~LdLs~N~l~-g~ip~~l~~l~~L~~Ldls-~N~l~g~ip~ 841 (1025)
+++|+.|+|++|.++ +.+|..+..++.|+.++++ .+.+.|..|.
T Consensus 236 l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~ 281 (317)
T 3o53_A 236 SQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEE 281 (317)
T ss_dssp CTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSC
T ss_pred CCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCchh
Confidence 999999999999999 8888999999999999998 5567776654
No 69
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.92 E-value=3.7e-24 Score=256.02 Aligned_cols=210 Identities=25% Similarity=0.315 Sum_probs=162.0
Q ss_pred CCCCCceeeccCCcccccccccccccCCcccEEEccCccccccCCCcccCCCCCCEEEcCCCcccccCCcccccccCCCE
Q 047190 532 LPPNVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGS 611 (1025)
Q Consensus 532 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 611 (1025)
.+++|++|++++|++++... .+++|+.|++++|++++ +|.. +++|++|++++|.+++ +|. .+.+|+.
T Consensus 99 ~l~~L~~L~Ls~N~l~~l~~-----~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~-l~~---~~~~L~~ 165 (622)
T 3g06_A 99 LPPGLLELSIFSNPLTHLPA-----LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS-LPA---LPSELCK 165 (622)
T ss_dssp CCTTCCEEEECSCCCCCCCC-----CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCE
T ss_pred CCCCCCEEECcCCcCCCCCC-----CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCC-cCC---ccCCCCE
Confidence 34566667777666665433 23668888888888885 5543 4788899999998885 343 2467888
Q ss_pred EEcccCcccccCCccccCCCCccEEeCCCCcCccccChhhhhcCCCCcEEEeecCcCcccCcccccccCcccEEEccccc
Q 047190 612 LSLYNNSLSGGLPSFFMNGSQLTLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNN 691 (1025)
Q Consensus 612 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 691 (1025)
|++++|.+++ +| ..+++|+.|++++|+++ .+|. .+++|+.|++++|.++. +|.. +++|+.|+|++|+
T Consensus 166 L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~-~l~~----~~~~L~~L~L~~N~l~~-l~~~---~~~L~~L~Ls~N~ 232 (622)
T 3g06_A 166 LWAYNNQLTS-LP---MLPSGLQELSVSDNQLA-SLPT----LPSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNR 232 (622)
T ss_dssp EECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSSC
T ss_pred EECCCCCCCC-Cc---ccCCCCcEEECCCCCCC-CCCC----ccchhhEEECcCCcccc-cCCC---CCCCCEEEccCCc
Confidence 9999999886 44 45688999999999998 5664 35789999999999884 4432 4789999999999
Q ss_pred cccccCccccCccccccccccCcccccccccccccccccceeEeecccCCccceeeccccceeEEEcccCCCCCcChhhH
Q 047190 692 ISGIIPKCFHNFTAMTKEKSSNLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEI 771 (1025)
Q Consensus 692 l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~~~ip~~~ 771 (1025)
+++ +|. .+++ |+.|+|++|+|++ +|.
T Consensus 233 L~~-lp~---~l~~-----------------------------------------------L~~L~Ls~N~L~~-lp~-- 258 (622)
T 3g06_A 233 LTS-LPV---LPSE-----------------------------------------------LKELMVSGNRLTS-LPM-- 258 (622)
T ss_dssp CSC-CCC---CCTT-----------------------------------------------CCEEECCSSCCSC-CCC--
T ss_pred cCc-CCC---CCCc-----------------------------------------------CcEEECCCCCCCc-CCc--
Confidence 885 442 2223 3789999999985 554
Q ss_pred hhcccCCeEeccCccccccCCCCCCCCCCccEEeCCCCcCCCcCcccccCCC
Q 047190 772 MDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSRNHFFGGIPSSLSRLR 823 (1025)
Q Consensus 772 ~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~ 823 (1025)
.+++|+.|+|++|+|+ .+|..++.+++|+.|+|++|.+++.+|..+..++
T Consensus 259 -~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~ 308 (622)
T 3g06_A 259 -LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREIT 308 (622)
T ss_dssp -CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHH
T ss_pred -ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhcc
Confidence 6789999999999999 7788999999999999999999999999887665
No 70
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.91 E-value=3.9e-25 Score=259.46 Aligned_cols=236 Identities=26% Similarity=0.223 Sum_probs=203.3
Q ss_pred CCCCceeeccCCcccccccccccccCCcccEEEccCccccccCCCcccCCCCCCEEEcCCCcccccCCcccccccCCCEE
Q 047190 533 PPNVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSL 612 (1025)
Q Consensus 533 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 612 (1025)
+++|+.|++++|.+++..+... ..+++|++|+|++|.+++..| +..+++|++|+|++|.+++..+ .++|++|
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L 104 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADL-APFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETL 104 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGG-TTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEE
T ss_pred CCCccEEEeeCCcCCCCCHHHH-hCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEE
Confidence 5689999999999988665333 357899999999999998776 8999999999999999986443 3899999
Q ss_pred EcccCcccccCCccccCCCCccEEeCCCCcCccccChhhhhcCCCCcEEEeecCcCcccCccccc-ccCcccEEEccccc
Q 047190 613 SLYNNSLSGGLPSFFMNGSQLTLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLC-YLSHIQILDLSLNN 691 (1025)
Q Consensus 613 ~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~-~l~~L~~L~Ls~N~ 691 (1025)
++++|.+++..+. .+++|+.|++++|.+++..|..+. .+++|++|+|++|.+++.+|..+. .+++|+.|+|++|.
T Consensus 105 ~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~ 180 (487)
T 3oja_A 105 HAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEG-CRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF 180 (487)
T ss_dssp ECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGG-GGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC
T ss_pred ECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhc-CCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCc
Confidence 9999999987665 458899999999999977777776 699999999999999999998886 79999999999999
Q ss_pred cccccCccccCccccccccccCcccccccccccccccccceeEeecccCCccceeeccccceeEEEcccCCCCCcChhhH
Q 047190 692 ISGIIPKCFHNFTAMTKEKSSNLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEI 771 (1025)
Q Consensus 692 l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~~~ip~~~ 771 (1025)
+++..+. ..++ .|+.|||++|++++.+|. +
T Consensus 181 l~~~~~~--~~l~-----------------------------------------------~L~~L~Ls~N~l~~~~~~-~ 210 (487)
T 3oja_A 181 IYDVKGQ--VVFA-----------------------------------------------KLKTLDLSSNKLAFMGPE-F 210 (487)
T ss_dssp CCEEECC--CCCT-----------------------------------------------TCCEEECCSSCCCEECGG-G
T ss_pred ccccccc--ccCC-----------------------------------------------CCCEEECCCCCCCCCCHh-H
Confidence 9976332 1233 348999999999986665 9
Q ss_pred hhcccCCeEeccCccccccCCCCCCCCCCccEEeCCCCcCC-CcCcccccCCCCCCEEECc
Q 047190 772 MDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSRNHFF-GGIPSSLSRLRLLSVMDLS 831 (1025)
Q Consensus 772 ~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~-g~ip~~l~~l~~L~~Ldls 831 (1025)
..++.|+.|+|++|.|++ +|..++.+++|+.|++++|.++ +.+|..+..++.|+.++++
T Consensus 211 ~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 211 QSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp GGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred cCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 999999999999999997 7888999999999999999999 7888888888888887776
No 71
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.91 E-value=2.4e-25 Score=246.91 Aligned_cols=241 Identities=23% Similarity=0.198 Sum_probs=161.7
Q ss_pred ccCcccccccccccccCCCCcchhccCCCCCCEEecccCCCCCCCCchhcccCCCCCeeeccCCcCCCCcchHHhhCCCC
Q 047190 133 IGSLGKLSELALSSAQFAGPIPHQLGNLSKLQVLDLRFNNLFSSGNLDWLSYLSSLRYLDLADCKLSKFSNWVQVLSNLR 212 (1025)
Q Consensus 133 l~~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~Ls~n~i~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~ 212 (1025)
+..+++|++|+|++|.+++..|..++++++|++|+|++|.+... ..+..+++|++|++++|.+++++ ..+
T Consensus 30 ~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~---~~~~~l~~L~~L~Ls~n~l~~l~-------~~~ 99 (317)
T 3o53_A 30 RQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYET---LDLESLSTLRTLDLNNNYVQELL-------VGP 99 (317)
T ss_dssp HTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEE---EEETTCTTCCEEECCSSEEEEEE-------ECT
T ss_pred hccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcc---hhhhhcCCCCEEECcCCcccccc-------CCC
Confidence 33444555555555555555555555555555555555554211 11555555555555555555432 235
Q ss_pred CCCEEEcCCCCCCCCCCCcccccccCCcccEEEccCCCCCCCCchhhhhcCCCCccEEEcCCCCCCCCchhhh-hCCCCC
Q 047190 213 SLTNLYLGYCDLPPISTPSLLHINYSKSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLHGSIPLAF-GHMASL 291 (1025)
Q Consensus 213 ~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~~~L~~L~Ls~n~l~~~~p~~~-~~l~~L 291 (1025)
+|++|++++|.+.+..+. .+ ++|++|++++|.+++..+..+..+.. |++|++++|.+++..+..+ ..+++|
T Consensus 100 ~L~~L~l~~n~l~~~~~~-----~~-~~L~~L~l~~N~l~~~~~~~~~~l~~--L~~L~Ls~N~l~~~~~~~~~~~l~~L 171 (317)
T 3o53_A 100 SIETLHAANNNISRVSCS-----RG-QGKKNIYLANNKITMLRDLDEGCRSR--VQYLDLKLNEIDTVNFAELAASSDTL 171 (317)
T ss_dssp TCCEEECCSSCCSEEEEC-----CC-SSCEEEECCSSCCCSGGGBCTGGGSS--EEEEECTTSCCCEEEGGGGGGGTTTC
T ss_pred CcCEEECCCCccCCcCcc-----cc-CCCCEEECCCCCCCCccchhhhccCC--CCEEECCCCCCCcccHHHHhhccCcC
Confidence 666666666666554332 12 67888888888887766667777777 8888888888887777666 468888
Q ss_pred cEEEccCCCCCCcchhhcCCCCccEEEeecCCCCCcchHHhhhcCCCCCCCCCCcEEEccccccccccCCCCCCCCCcEE
Q 047190 292 RHLDLLSNQLREVPKFLGNMSSLKRLVFSYNELRGELSEFIQNVSSGSTKNSSLEWLYLAFNEITGTIPDLGGFPSLQIL 371 (1025)
Q Consensus 292 ~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~l~~~~p~l~~l~~L~~L 371 (1025)
++|++++|.++++|.. ..+++|++|++++|.+++..+. +..++ +|++|+|++|.+++..+.+..+++|++|
T Consensus 172 ~~L~L~~N~l~~~~~~-~~l~~L~~L~Ls~N~l~~l~~~-~~~l~-------~L~~L~L~~N~l~~l~~~~~~l~~L~~L 242 (317)
T 3o53_A 172 EHLNLQYNFIYDVKGQ-VVFAKLKTLDLSSNKLAFMGPE-FQSAA-------GVTWISLRNNKLVLIEKALRFSQNLEHF 242 (317)
T ss_dssp CEEECTTSCCCEEECC-CCCTTCCEEECCSSCCCEECGG-GGGGT-------TCSEEECTTSCCCEECTTCCCCTTCCEE
T ss_pred CEEECCCCcCcccccc-cccccCCEEECCCCcCCcchhh-hcccC-------cccEEECcCCcccchhhHhhcCCCCCEE
Confidence 8888888888887543 3478888888888888765443 66666 8888888888887544447777888888
Q ss_pred Eeeccccc-CcccccccccCCcceeeccCc
Q 047190 372 SLENNRLT-GTISKSIGQLSKLELLLLSGN 400 (1025)
Q Consensus 372 ~L~~n~l~-~~~p~~l~~l~~L~~L~L~~N 400 (1025)
++++|++. +.++..+..+++|+.|+++++
T Consensus 243 ~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~ 272 (317)
T 3o53_A 243 DLRGNGFHCGTLRDFFSKNQRVQTVAKQTV 272 (317)
T ss_dssp ECTTCCCBHHHHHHHHHTCHHHHHHHHHHH
T ss_pred EccCCCccCcCHHHHHhccccceEEECCCc
Confidence 88888887 667777777788888877744
No 72
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.91 E-value=6.7e-26 Score=275.07 Aligned_cols=89 Identities=11% Similarity=0.022 Sum_probs=41.3
Q ss_pred cCCCCCCEEEcCCCcccccCCccccc-ccCCCEEEcccCcccccCCccc-cCCCCccEEeCCCCcCccccChhhhhcCCC
Q 047190 580 FQFDSLAILNLANNSFFGEIPDSMSF-LRSIGSLSLYNNSLSGGLPSFF-MNGSQLTLMDLGKNGLSGEIPTWIGESLPN 657 (1025)
Q Consensus 580 ~~l~~L~~L~Ls~N~l~~~~p~~~~~-l~~L~~L~L~~N~l~~~~p~~~-~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~ 657 (1025)
..+++|+.|++++ .+++..+..+.. +++|++|++++|.+++..+..+ ..+++|+.|+|++|.+++..+..+...+++
T Consensus 429 ~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~ 507 (594)
T 2p1m_B 429 EHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLET 507 (594)
T ss_dssp HHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGG
T ss_pred hhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCC
Confidence 3445555555544 333333233332 4455555555555543333222 345555555555555543333323323455
Q ss_pred CcEEEeecCcCc
Q 047190 658 LVVLSLRSNKFH 669 (1025)
Q Consensus 658 L~~L~L~~N~l~ 669 (1025)
|++|++++|+++
T Consensus 508 L~~L~l~~~~~~ 519 (594)
T 2p1m_B 508 MRSLWMSSCSVS 519 (594)
T ss_dssp SSEEEEESSCCB
T ss_pred CCEEeeeCCCCC
Confidence 555555555553
No 73
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.91 E-value=3.5e-23 Score=223.78 Aligned_cols=205 Identities=22% Similarity=0.231 Sum_probs=132.4
Q ss_pred ccEEEccCccccccCCCcccCCCCCCEEEcCCCcccccCCcccccccCCCEEEcccCcccccCCccccCCCCccEEeCCC
Q 047190 561 LTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGK 640 (1025)
Q Consensus 561 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~ 640 (1025)
.+.++++++.++ .+|..+. ++++.|++++|++++..+..|..+++|++|++++|++++..+..|.+
T Consensus 18 ~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~----------- 83 (270)
T 2o6q_A 18 KNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKE----------- 83 (270)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSS-----------
T ss_pred CCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcC-----------
Confidence 455666666665 3443332 34555555555555444444444445555555444444433333444
Q ss_pred CcCccccChhhhhcCCCCcEEEeecCcCcccCcccccccCcccEEEccccccccccCccccCccccccccccCccccccc
Q 047190 641 NGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPKCFHNFTAMTKEKSSNLSIISNY 720 (1025)
Q Consensus 641 N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~ 720 (1025)
+++|++|+|++|++++..+..+..+++|++|++++|++++..|..|+.+++|
T Consensus 84 --------------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-------------- 135 (270)
T 2o6q_A 84 --------------LKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKL-------------- 135 (270)
T ss_dssp --------------CTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTC--------------
T ss_pred --------------CCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCC--------------
Confidence 5555555555555554444445555555666666666555555545444444
Q ss_pred ccccccccccceeEeecccCCccceeeccccceeEEEcccCCCCCcChhhHhhcccCCeEeccCccccccCCCCCCCCCC
Q 047190 721 YYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPRIGQLKS 800 (1025)
Q Consensus 721 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~ 800 (1025)
+.|+|++|++++..+..+..+++|+.|+|++|++++..+..|+.+++
T Consensus 136 ---------------------------------~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 182 (270)
T 2o6q_A 136 ---------------------------------TYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTE 182 (270)
T ss_dssp ---------------------------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTT
T ss_pred ---------------------------------CEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCC
Confidence 56666666666655566777888888999999998888888899999
Q ss_pred ccEEeCCCCcCCCcCcccccCCCCCCEEECcCCcccccCC
Q 047190 801 LDFLDLSRNHFFGGIPSSLSRLRLLSVMDLSYNNFSGKIP 840 (1025)
Q Consensus 801 L~~LdLs~N~l~g~ip~~l~~l~~L~~Ldls~N~l~g~ip 840 (1025)
|++|||++|++++..+..+..+++|+.|++++|++.+..+
T Consensus 183 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 222 (270)
T 2o6q_A 183 LKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCN 222 (270)
T ss_dssp CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSS
T ss_pred cCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCc
Confidence 9999999999998877788889999999999999988765
No 74
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.90 E-value=1.3e-25 Score=272.54 Aligned_cols=314 Identities=13% Similarity=0.106 Sum_probs=149.1
Q ss_pred CCCcccceEecCCCCcEEEEECCCCCCCCCCccccccc-ccCcCCCCCcEEEccCCCCCC-CC-C------------ccc
Q 047190 68 NCCKWRGVRCSNKTGHVLGLDLRASSDSPVDALKGTIN-PSLLKLQHLTYLDLSWNNFSG-SP-I------------PEF 132 (1025)
Q Consensus 68 ~~c~w~gv~C~~~~~~v~~L~L~~~~~~~~~~l~g~l~-~~l~~l~~L~~L~Ls~n~l~~-~~-~------------p~~ 132 (1025)
-|++|.++.. .....+++..+ .+..+ ..+.++++|++|+++++.... .. . +..
T Consensus 33 vck~W~~~~~----~~~~~l~~~~~--------~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l 100 (594)
T 2p1m_B 33 VCKSWYEIER----WCRRKVFIGNC--------YAVSPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAM 100 (594)
T ss_dssp SCHHHHHHHH----HHCCEEEESST--------TSSCHHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHH
T ss_pred HHHHHHHhhh----hhceEEeeccc--------cccCHHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHH
Confidence 3667888822 12345666552 12222 345678999999999875211 00 1 122
Q ss_pred ccCcccccccccccccCCCCcchhcc-CCCCCCEEecccCC-CCCCCCchhcccCCCCCeeeccCCcCCCCc-c-hHHhh
Q 047190 133 IGSLGKLSELALSSAQFAGPIPHQLG-NLSKLQVLDLRFNN-LFSSGNLDWLSYLSSLRYLDLADCKLSKFS-N-WVQVL 208 (1025)
Q Consensus 133 l~~l~~L~~L~Ls~n~l~~~~p~~l~-~L~~L~~L~Ls~n~-i~~~~~~~~l~~l~~L~~L~L~~n~l~~~~-~-~~~~l 208 (1025)
...+++|++|+|++|.+++..+..+. .+++|++|+|++|. +........+.++++|++|++++|.+++.. . +....
T Consensus 101 ~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~ 180 (594)
T 2p1m_B 101 SSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFP 180 (594)
T ss_dssp HHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSC
T ss_pred HHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHh
Confidence 34566777777777777666555554 56777777777763 211112223335666666666666654421 1 11122
Q ss_pred CCCCCCCEEEcCCCCCCCCCCCcccccccCCcccEEEccCCCCCCCCchhhhhcCCCCccEEEcCCCCCCCCchhhhhCC
Q 047190 209 SNLRSLTNLYLGYCDLPPISTPSLLHINYSKSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLHGSIPLAFGHM 288 (1025)
Q Consensus 209 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~~~L~~L~Ls~n~l~~~~p~~~~~l 288 (1025)
..+++|++|++++|. ....... +......+++ |++|++++|...+.++..+..+
T Consensus 181 ~~~~~L~~L~l~~~~-~~~~~~~-----------------------l~~l~~~~~~--L~~L~L~~~~~~~~l~~~~~~~ 234 (594)
T 2p1m_B 181 DTYTSLVSLNISCLA-SEVSFSA-----------------------LERLVTRCPN--LKSLKLNRAVPLEKLATLLQRA 234 (594)
T ss_dssp TTCCCCCEEECTTCC-SCCCHHH-----------------------HHHHHHHCTT--CCEEECCTTSCHHHHHHHHHHC
T ss_pred hcCCcCcEEEecccC-CcCCHHH-----------------------HHHHHHhCCC--CcEEecCCCCcHHHHHHHHhcC
Confidence 244455555555543 1111000 0011122234 5555555552212245555555
Q ss_pred CCCcEEEccCCC-------CCCcchhhcCCCCccEE-EeecCCCCCcchHHhhhcCCCCCCCCCCcEEEccccccccccC
Q 047190 289 ASLRHLDLLSNQ-------LREVPKFLGNMSSLKRL-VFSYNELRGELSEFIQNVSSGSTKNSSLEWLYLAFNEITGTIP 360 (1025)
Q Consensus 289 ~~L~~L~Ls~n~-------l~~lp~~l~~l~~L~~L-~Ls~n~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~l~~~~p 360 (1025)
++|++|+++.+. +.+++..+.++++|+.| .+.... .+.++..+..++ +|++|+|++|.+++...
T Consensus 235 ~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~-~~~l~~~~~~~~-------~L~~L~L~~~~l~~~~l 306 (594)
T 2p1m_B 235 PQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAV-PAYLPAVYSVCS-------RLTTLNLSYATVQSYDL 306 (594)
T ss_dssp TTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCC-GGGGGGGHHHHT-------TCCEEECTTCCCCHHHH
T ss_pred CcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccc-hhhHHHHHHhhC-------CCCEEEccCCCCCHHHH
Confidence 556666544332 22344455556666655 222211 122233333333 66666666665443221
Q ss_pred C--CCCCCCCcEEEeecccccCc-ccccccccCCcceeeccC---------cccccccchhhhcCCCCCcEEECCCCccc
Q 047190 361 D--LGGFPSLQILSLENNRLTGT-ISKSIGQLSKLELLLLSG---------NSLRGVISEALFSNLSSLDTLQLSDNSLT 428 (1025)
Q Consensus 361 ~--l~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~L~~---------N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~ 428 (1025)
. +..+++|++|++++| +++. ++.....+++|++|++.+ +.+++........++++|++|.+..|.++
T Consensus 307 ~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~ 385 (594)
T 2p1m_B 307 VKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMT 385 (594)
T ss_dssp HHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCC
T ss_pred HHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcC
Confidence 1 345566666666665 3221 111122356666666622 33332222222233566666655555444
No 75
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.90 E-value=2.6e-23 Score=225.71 Aligned_cols=213 Identities=23% Similarity=0.194 Sum_probs=180.4
Q ss_pred CcccEEEccCccccccCCCcccCCCCCCEEEcCCCcccccCCcccccccCCCEEEcccCcccccCCccccCCCCccEEeC
Q 047190 559 HLLTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDL 638 (1025)
Q Consensus 559 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 638 (1025)
++|++|++++|.+++..+..|.++++|++|++++|.+++..+..+..+++|++|++++|++++..+..|.++++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 45888999999998777778889999999999999998888888899999999999999999888888999999999999
Q ss_pred CCCcCccccChhhhhcCCCCcEEEeecCcCccc-CcccccccCcccEEEccccccccccCccccCccccccccccCcccc
Q 047190 639 GKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGN-IPFQLCYLSHIQILDLSLNNISGIIPKCFHNFTAMTKEKSSNLSII 717 (1025)
Q Consensus 639 s~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~ 717 (1025)
++|++++..+..+. .+++|++|++++|++++. +|..+..+++|++|++++|++++..+..+..+..+..+
T Consensus 108 ~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l-------- 178 (276)
T 2z62_A 108 VETNLASLENFPIG-HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLL-------- 178 (276)
T ss_dssp TTSCCCCSTTCCCT-TCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTC--------
T ss_pred CCCCccccCchhcc-cCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhcccc--------
Confidence 99999854444554 789999999999999874 58899999999999999999998877777766665211
Q ss_pred cccccccccccccceeEeecccCCccceeeccccceeEEEcccCCCCCcChhhHhhcccCCeEeccCccccccCCCCCCC
Q 047190 718 SNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPRIGQ 797 (1025)
Q Consensus 718 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~ 797 (1025)
...|++++|++++..+..+.. .+|+.|+|++|++++..+..++.
T Consensus 179 -----------------------------------~l~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~ 222 (276)
T 2z62_A 179 -----------------------------------NLSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDR 222 (276)
T ss_dssp -----------------------------------CEEEECCSSCCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTT
T ss_pred -----------------------------------ceeeecCCCcccccCccccCC-CcccEEECCCCceeecCHhHhcc
Confidence 027999999999776665554 48999999999999888888899
Q ss_pred CCCccEEeCCCCcCCCcCc
Q 047190 798 LKSLDFLDLSRNHFFGGIP 816 (1025)
Q Consensus 798 l~~L~~LdLs~N~l~g~ip 816 (1025)
+++|+.|+|++|.+++..|
T Consensus 223 l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 223 LTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp CCSCCEEECCSSCBCCCTT
T ss_pred cccccEEEccCCcccccCC
Confidence 9999999999999998654
No 76
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.89 E-value=1.1e-22 Score=221.74 Aligned_cols=206 Identities=23% Similarity=0.278 Sum_probs=159.7
Q ss_pred ccCCCCCCEEEcCCCcccccCCcccccccCCCEEEcccCcccccCCccccCCCCccEEeCCCCcCccccChhhhhcCCCC
Q 047190 579 WFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGKNGLSGEIPTWIGESLPNL 658 (1025)
Q Consensus 579 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L 658 (1025)
+.++++++.+++++|.++ .+|..+. ++++.|++++|.+++..+..|..+++|+.|++++|+++ .+|.. . .+++|
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~-~-~l~~L 79 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVD-G-TLPVL 79 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEECC-S-CCTTC
T ss_pred ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccC-cccCC-C-CCCcC
Confidence 455666777777777766 3444443 56777777777777776777777777777777777777 34433 2 57788
Q ss_pred cEEEeecCcCcccCcccccccCcccEEEccccccccccCccccCccccccccccCcccccccccccccccccceeEeecc
Q 047190 659 VVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPKCFHNFTAMTKEKSSNLSIISNYYYNLGLRGMLMPLIFFDT 738 (1025)
Q Consensus 659 ~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 738 (1025)
++|+|++|+++ .+|..+..+++|++|+|++|++++..|..|..+++|
T Consensus 80 ~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L-------------------------------- 126 (290)
T 1p9a_G 80 GTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGEL-------------------------------- 126 (290)
T ss_dssp CEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTC--------------------------------
T ss_pred CEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCC--------------------------------
Confidence 88888888877 566677778888888888888887766777766665
Q ss_pred cCCccceeeccccceeEEEcccCCCCCcChhhHhhcccCCeEeccCccccccCCCCCCCCCCccEEeCCCCcCCCcCccc
Q 047190 739 WKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSRNHFFGGIPSS 818 (1025)
Q Consensus 739 ~~~~~~~~~~~~~~l~~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~ 818 (1025)
+.|+|++|++++..+..|..+++|+.|+|++|+|++..+..|..+++|+.|+|++|+++ .+|..
T Consensus 127 ---------------~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~ 190 (290)
T 1p9a_G 127 ---------------QELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKG 190 (290)
T ss_dssp ---------------CEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTT
T ss_pred ---------------CEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChh
Confidence 77888888888877777888899999999999999877777889999999999999998 67888
Q ss_pred ccCCCCCCEEECcCCcccccC
Q 047190 819 LSRLRLLSVMDLSYNNFSGKI 839 (1025)
Q Consensus 819 l~~l~~L~~Ldls~N~l~g~i 839 (1025)
+..+..|+.+++++|++.+..
T Consensus 191 ~~~~~~L~~l~L~~Np~~C~c 211 (290)
T 1p9a_G 191 FFGSHLLPFAFLHGNPWLCNC 211 (290)
T ss_dssp TTTTCCCSEEECCSCCBCCSG
T ss_pred hcccccCCeEEeCCCCccCcC
Confidence 888889999999999998753
No 77
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.89 E-value=1.3e-23 Score=227.29 Aligned_cols=222 Identities=21% Similarity=0.200 Sum_probs=173.8
Q ss_pred cccEEEccCccccccCCCcccCCCCCCEEEcCCCcccccCCcccccccCCCEEEcccCcccccCCccccCCCCccEEeCC
Q 047190 560 LLTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLG 639 (1025)
Q Consensus 560 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls 639 (1025)
.+..+++.++.+.... ....+++|+.|++++|.++.. ..+..+++|++|++++|.+++. ..+..+++|++|+++
T Consensus 20 ~l~~l~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~ 93 (272)
T 3rfs_A 20 ETIKANLKKKSVTDAV--TQNELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILT 93 (272)
T ss_dssp HHHHHHHTCSCTTSEE--CHHHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECT
T ss_pred HHHHHHhcCccccccc--ccccccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECC
Confidence 3455666666665442 345577788888888877632 3467778888888888888763 367788888888888
Q ss_pred CCcCccccChhhhhcCCCCcEEEeecCcCcccCcccccccCcccEEEccccccccccCccccCccccccccccCcccccc
Q 047190 640 KNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPKCFHNFTAMTKEKSSNLSIISN 719 (1025)
Q Consensus 640 ~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~ 719 (1025)
+|++++..|..+. .+++|++|+|++|++++..+..+..+++|++|++++|++++..|..++.+++|
T Consensus 94 ~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L------------- 159 (272)
T 3rfs_A 94 GNQLQSLPNGVFD-KLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNL------------- 159 (272)
T ss_dssp TSCCCCCCTTTTT-TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC-------------
T ss_pred CCccCccChhHhc-CCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccC-------------
Confidence 8888844443344 68888888888888887777778888888888888888887777666666665
Q ss_pred cccccccccccceeEeecccCCccceeeccccceeEEEcccCCCCCcChhhHhhcccCCeEeccCccccccCCCCCCCCC
Q 047190 720 YYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPRIGQLK 799 (1025)
Q Consensus 720 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~ 799 (1025)
+.|++++|++++..+..++.+++|+.|+|++|++++.+|..++.++
T Consensus 160 ----------------------------------~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 205 (272)
T 3rfs_A 160 ----------------------------------TELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLT 205 (272)
T ss_dssp ----------------------------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCT
T ss_pred ----------------------------------CEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCc
Confidence 7888888888888888888999999999999999998888899999
Q ss_pred CccEEeCCCCcCCCcCcccccCCCCCCEEECcCCcccccCCCC
Q 047190 800 SLDFLDLSRNHFFGGIPSSLSRLRLLSVMDLSYNNFSGKIPKG 842 (1025)
Q Consensus 800 ~L~~LdLs~N~l~g~ip~~l~~l~~L~~Ldls~N~l~g~ip~~ 842 (1025)
+|+.|+|++|.+++..| .|+.|++++|+++|.||..
T Consensus 206 ~L~~L~l~~N~~~~~~~-------~l~~l~~~~n~~~g~ip~~ 241 (272)
T 3rfs_A 206 SLQYIWLHDNPWDCTCP-------GIRYLSEWINKHSGVVRNS 241 (272)
T ss_dssp TCCEEECCSSCBCCCTT-------TTHHHHHHHHHTGGGBBCT
T ss_pred CCCEEEccCCCccccCc-------HHHHHHHHHHhCCCcccCc
Confidence 99999999999987654 5888999999999999974
No 78
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.89 E-value=2.6e-22 Score=216.88 Aligned_cols=205 Identities=23% Similarity=0.225 Sum_probs=158.3
Q ss_pred CCCceeeccCCcccccccccccccCCcccEEEccCccccccCCCcccCCCCCCEEEcCCCcccccCCcccccccCCCEEE
Q 047190 534 PNVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLS 613 (1025)
Q Consensus 534 ~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 613 (1025)
.+.+.++++++.++....... +.++.|++++|.+++..+..|.++++|++|++++|.++...+..|..+++|++|+
T Consensus 16 ~~~~~l~~~~~~l~~ip~~~~----~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~ 91 (270)
T 2o6q_A 16 NNKNSVDCSSKKLTAIPSNIP----ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLW 91 (270)
T ss_dssp TTTTEEECTTSCCSSCCSCCC----TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEE
T ss_pred CCCCEEEccCCCCCccCCCCC----CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEE
Confidence 467899999999986543332 5799999999999988888999999999999999999977777788999999999
Q ss_pred cccCcccccCCccccCCCCccEEeCCCCcCccccChhhhhcCCCCcEEEeecCcCcccCcccccccCcccEEEccccccc
Q 047190 614 LYNNSLSGGLPSFFMNGSQLTLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNIS 693 (1025)
Q Consensus 614 L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 693 (1025)
+++|++++..+..|..+++|++|++++|++++ +|...+..+++|++|+|++|++++..+..+..+++|+.|+|++|.++
T Consensus 92 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 170 (270)
T 2o6q_A 92 VTDNKLQALPIGVFDQLVNLAELRLDRNQLKS-LPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLK 170 (270)
T ss_dssp CCSSCCCCCCTTTTTTCSSCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred CCCCcCCcCCHhHcccccCCCEEECCCCccCe-eCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCc
Confidence 99999998777788888888888888888884 44333335777777777777776555555666666666666666555
Q ss_pred cccCccccCccccccccccCcccccccccccccccccceeEeecccCCccceeeccccceeEEEcccCCCCCcChhhHhh
Q 047190 694 GIIPKCFHNFTAMTKEKSSNLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMD 773 (1025)
Q Consensus 694 ~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~~~ip~~~~~ 773 (1025)
+ ..+..|..
T Consensus 171 ~-----------------------------------------------------------------------~~~~~~~~ 179 (270)
T 2o6q_A 171 R-----------------------------------------------------------------------VPEGAFDK 179 (270)
T ss_dssp C-----------------------------------------------------------------------CCTTTTTT
T ss_pred E-----------------------------------------------------------------------eChhHhcc
Confidence 3 33344555
Q ss_pred cccCCeEeccCccccccCCCCCCCCCCccEEeCCCCcCCCc
Q 047190 774 LVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSRNHFFGG 814 (1025)
Q Consensus 774 l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ 814 (1025)
+++|++|+|++|++++..+..+..+++|+.|+|++|.+...
T Consensus 180 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 220 (270)
T 2o6q_A 180 LTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCT 220 (270)
T ss_dssp CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCS
T ss_pred CCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCC
Confidence 66777778888888776677788888888888888888754
No 79
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.89 E-value=2.8e-23 Score=224.71 Aligned_cols=226 Identities=19% Similarity=0.173 Sum_probs=190.7
Q ss_pred CceeeccCCcccccccccccccCCcccEEEccCccccccCCCcccCCCCCCEEEcCCCcccccCCcccccccCCCEEEcc
Q 047190 536 VSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLY 615 (1025)
Q Consensus 536 L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~ 615 (1025)
+..+++..+.+...... ..+++|+.|++++|.++. + ..+..+++|++|++++|.+++. ..+..+++|++|+++
T Consensus 21 l~~l~l~~~~~~~~~~~---~~l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~ 93 (272)
T 3rfs_A 21 TIKANLKKKSVTDAVTQ---NELNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILT 93 (272)
T ss_dssp HHHHHHTCSCTTSEECH---HHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECT
T ss_pred HHHHHhcCccccccccc---ccccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECC
Confidence 33445555555443322 235789999999999884 3 3588899999999999999863 478899999999999
Q ss_pred cCcccccCCccccCCCCccEEeCCCCcCccccChhhhhcCCCCcEEEeecCcCcccCcccccccCcccEEEccccccccc
Q 047190 616 NNSLSGGLPSFFMNGSQLTLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGI 695 (1025)
Q Consensus 616 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 695 (1025)
+|.+++..+..|..+++|++|++++|++++..|..+. .+++|++|++++|++++..+..+..+++|+.|++++|++++.
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 172 (272)
T 3rfs_A 94 GNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFD-KLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSL 172 (272)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTT-TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred CCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhc-cCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCcc
Confidence 9999988888899999999999999999954444444 799999999999999988888889999999999999999988
Q ss_pred cCccccCccccccccccCcccccccccccccccccceeEeecccCCccceeeccccceeEEEcccCCCCCcChhhHhhcc
Q 047190 696 IPKCFHNFTAMTKEKSSNLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLV 775 (1025)
Q Consensus 696 ~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~~~ip~~~~~l~ 775 (1025)
.|..++.+++| +.|++++|++++..|..+..++
T Consensus 173 ~~~~~~~l~~L-----------------------------------------------~~L~L~~N~l~~~~~~~~~~l~ 205 (272)
T 3rfs_A 173 PEGVFDKLTQL-----------------------------------------------KDLRLYQNQLKSVPDGVFDRLT 205 (272)
T ss_dssp CTTTTTTCTTC-----------------------------------------------CEEECCSSCCSCCCTTTTTTCT
T ss_pred CHHHhcCCccC-----------------------------------------------CEEECCCCcCCccCHHHHhCCc
Confidence 77777777666 8899999999999998899999
Q ss_pred cCCeEeccCccccccCCCCCCCCCCccEEeCCCCcCCCcCcccccCCC
Q 047190 776 GLVALNLSNNNLTGQITPRIGQLKSLDFLDLSRNHFFGGIPSSLSRLR 823 (1025)
Q Consensus 776 ~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~ 823 (1025)
+|+.|+|++|.+.+..| +|+.|+++.|+++|.+|..++.+.
T Consensus 206 ~L~~L~l~~N~~~~~~~-------~l~~l~~~~n~~~g~ip~~~~~~~ 246 (272)
T 3rfs_A 206 SLQYIWLHDNPWDCTCP-------GIRYLSEWINKHSGVVRNSAGSVA 246 (272)
T ss_dssp TCCEEECCSSCBCCCTT-------TTHHHHHHHHHTGGGBBCTTSCBC
T ss_pred CCCEEEccCCCccccCc-------HHHHHHHHHHhCCCcccCcccccC
Confidence 99999999999986654 789999999999999999987654
No 80
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.87 E-value=1.1e-21 Score=213.95 Aligned_cols=203 Identities=21% Similarity=0.173 Sum_probs=177.4
Q ss_pred cCCcccEEEccCccccccCCCcccCCCCCCEEEcCCCcccccCCcccccccCCCEEEcccCcccccCCccccCCCCccEE
Q 047190 557 SSHLLTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLM 636 (1025)
Q Consensus 557 ~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L 636 (1025)
.+++++.+++++|.++ .+|..+. ++++.|++++|.+++..+..+..+++|++|++++|.+++..+. ..+++|++|
T Consensus 8 ~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~L 82 (290)
T 1p9a_G 8 KVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGTL 82 (290)
T ss_dssp CSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCCEE
T ss_pred ccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCCEE
Confidence 3467899999999998 5565553 6899999999999988888899999999999999999875443 788999999
Q ss_pred eCCCCcCccccChhhhhcCCCCcEEEeecCcCcccCcccccccCcccEEEccccccccccCccccCccccccccccCccc
Q 047190 637 DLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPKCFHNFTAMTKEKSSNLSI 716 (1025)
Q Consensus 637 ~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~ 716 (1025)
++++|+++ .+|..+. .+++|++|+|++|++++..|..|..+++|++|+|++|++++..+..|..+++|
T Consensus 83 ~Ls~N~l~-~l~~~~~-~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L---------- 150 (290)
T 1p9a_G 83 DLSHNQLQ-SLPLLGQ-TLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL---------- 150 (290)
T ss_dssp ECCSSCCS-SCCCCTT-TCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC----------
T ss_pred ECCCCcCC-cCchhhc-cCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCC----------
Confidence 99999998 8888776 69999999999999998888899999999999999999998777777766665
Q ss_pred ccccccccccccccceeEeecccCCccceeeccccceeEEEcccCCCCCcChhhHhhcccCCeEeccCccccccCCCCCC
Q 047190 717 ISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPRIG 796 (1025)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~ 796 (1025)
+.|+|++|++++..+..+..+++|+.|+|++|+|+ .+|..+.
T Consensus 151 -------------------------------------~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~ 192 (290)
T 1p9a_G 151 -------------------------------------EKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFF 192 (290)
T ss_dssp -------------------------------------CEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTT
T ss_pred -------------------------------------CEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhc
Confidence 88999999999887788899999999999999999 6788888
Q ss_pred CCCCccEEeCCCCcCCCc
Q 047190 797 QLKSLDFLDLSRNHFFGG 814 (1025)
Q Consensus 797 ~l~~L~~LdLs~N~l~g~ 814 (1025)
.+.+|+.|+|++|.+...
T Consensus 193 ~~~~L~~l~L~~Np~~C~ 210 (290)
T 1p9a_G 193 GSHLLPFAFLHGNPWLCN 210 (290)
T ss_dssp TTCCCSEEECCSCCBCCS
T ss_pred ccccCCeEEeCCCCccCc
Confidence 889999999999998753
No 81
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.87 E-value=1.1e-22 Score=224.61 Aligned_cols=230 Identities=21% Similarity=0.157 Sum_probs=138.3
Q ss_pred CCceeeccCCccccccc--ccccccCCcccEEEccCccccccCCCcc--cCCCCCCEEEcCCCcccccCC----cccccc
Q 047190 535 NVSSLNLSKNKFSGSIS--FLCSISSHLLTYLDLSNNLLSGRLPDCW--FQFDSLAILNLANNSFFGEIP----DSMSFL 606 (1025)
Q Consensus 535 ~L~~L~l~~n~l~~~~~--~~~~~~~~~L~~L~Ls~N~l~~~~p~~~--~~l~~L~~L~Ls~N~l~~~~p----~~~~~l 606 (1025)
.++.+.+.++.+....- .......++|++|++++|.+++..|..+ ..+++|++|++++|.+++..+ ..+..+
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 144 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK 144 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence 35556666655543210 0111123557777777777777777776 677777777777777776544 233456
Q ss_pred cCCCEEEcccCcccccCCccccCCCCccEEeCCCCcCccc--cC-hhhhhcCCCCcEEEeecCcCcccC--cc-cccccC
Q 047190 607 RSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGKNGLSGE--IP-TWIGESLPNLVVLSLRSNKFHGNI--PF-QLCYLS 680 (1025)
Q Consensus 607 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~--ip-~~~~~~l~~L~~L~L~~N~l~~~~--p~-~l~~l~ 680 (1025)
++|++|++++|++++..+..|..+++|++|+|++|++.+. ++ ......+++|++|+|++|+++... +. .+..++
T Consensus 145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~ 224 (310)
T 4glp_A 145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGV 224 (310)
T ss_dssp SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTC
T ss_pred cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCC
Confidence 6777777777777766667777777777777777776542 21 111124566666666666664211 11 134555
Q ss_pred cccEEEccccccccccCccccCccccccccccCcccccccccccccccccceeEeecccCCccceeeccccceeEEEccc
Q 047190 681 HIQILDLSLNNISGIIPKCFHNFTAMTKEKSSNLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSS 760 (1025)
Q Consensus 681 ~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~ 760 (1025)
+|++|+|++|++++..|..+..+..
T Consensus 225 ~L~~L~Ls~N~l~~~~p~~~~~~~~------------------------------------------------------- 249 (310)
T 4glp_A 225 QPHSLDLSHNSLRATVNPSAPRCMW------------------------------------------------------- 249 (310)
T ss_dssp CCSSEECTTSCCCCCCCSCCSSCCC-------------------------------------------------------
T ss_pred CCCEEECCCCCCCccchhhHHhccC-------------------------------------------------------
Confidence 6666666666665555544433221
Q ss_pred CCCCCcChhhHhhcccCCeEeccCccccccCCCCCCCCCCccEEeCCCCcCCCcCcccccCCCCCCEEECcCCcccc
Q 047190 761 NKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSRNHFFGGIPSSLSRLRLLSVMDLSYNNFSG 837 (1025)
Q Consensus 761 N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~Ldls~N~l~g 837 (1025)
+++|++|+|++|+|+ .+|..+. ++|++|||++|++++. |. +..++.|+.|++++|+++.
T Consensus 250 -------------~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 250 -------------SSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp -------------CTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred -------------cCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence 146677777777777 5566554 6777788888877764 32 5666777788888887764
No 82
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.87 E-value=1.7e-23 Score=239.03 Aligned_cols=236 Identities=18% Similarity=0.233 Sum_probs=189.1
Q ss_pred CCcccEEEccCccccccCC----CcccCCCCCCEEEcCCC---cccccCCccc-------ccccCCCEEEcccCcccc--
Q 047190 558 SHLLTYLDLSNNLLSGRLP----DCWFQFDSLAILNLANN---SFFGEIPDSM-------SFLRSIGSLSLYNNSLSG-- 621 (1025)
Q Consensus 558 ~~~L~~L~Ls~N~l~~~~p----~~~~~l~~L~~L~Ls~N---~l~~~~p~~~-------~~l~~L~~L~L~~N~l~~-- 621 (1025)
+++|+.|+|++|.+++..+ ..+..+++|++|+|++| ++++.+|..+ ..+++|++|+|++|.+++
T Consensus 31 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~ 110 (386)
T 2ca6_A 31 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA 110 (386)
T ss_dssp CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTT
T ss_pred CCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHH
Confidence 4678999999998886633 44778899999999986 4555666555 678899999999999987
Q ss_pred --cCCccccCCCCccEEeCCCCcCccccChhhhh---cC---------CCCcEEEeecCcCc-ccCc---ccccccCccc
Q 047190 622 --GLPSFFMNGSQLTLMDLGKNGLSGEIPTWIGE---SL---------PNLVVLSLRSNKFH-GNIP---FQLCYLSHIQ 683 (1025)
Q Consensus 622 --~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~---~l---------~~L~~L~L~~N~l~-~~~p---~~l~~l~~L~ 683 (1025)
.+|..+..+++|++|+|++|.+++..+..+.. .+ ++|++|+|++|+++ +.+| ..+..+++|+
T Consensus 111 ~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~ 190 (386)
T 2ca6_A 111 QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLH 190 (386)
T ss_dssp HHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCC
T ss_pred HHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcC
Confidence 47778889999999999999997554444432 23 89999999999997 4445 4677889999
Q ss_pred EEEcccccccc-----ccCccccCccccccccccCcccccccccccccccccceeEeecccCCccceeeccccceeEEEc
Q 047190 684 ILDLSLNNISG-----IIPKCFHNFTAMTKEKSSNLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDL 758 (1025)
Q Consensus 684 ~L~Ls~N~l~~-----~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdL 758 (1025)
.|+|++|+++. ..|..+..+++| +.|+|
T Consensus 191 ~L~L~~n~l~~~g~~~l~~~~l~~~~~L-----------------------------------------------~~L~L 223 (386)
T 2ca6_A 191 TVKMVQNGIRPEGIEHLLLEGLAYCQEL-----------------------------------------------KVLDL 223 (386)
T ss_dssp EEECCSSCCCHHHHHHHHHTTGGGCTTC-----------------------------------------------CEEEC
T ss_pred EEECcCCCCCHhHHHHHHHHHhhcCCCc-----------------------------------------------cEEEC
Confidence 99999999872 233344444443 88999
Q ss_pred ccCCCC----CcChhhHhhcccCCeEeccCcccccc----CCCCC--CCCCCccEEeCCCCcCCC----cCcccc-cCCC
Q 047190 759 SSNKLG----GKVLEEIMDLVGLVALNLSNNNLTGQ----ITPRI--GQLKSLDFLDLSRNHFFG----GIPSSL-SRLR 823 (1025)
Q Consensus 759 s~N~l~----~~ip~~~~~l~~L~~L~Ls~N~l~g~----ip~~~--~~l~~L~~LdLs~N~l~g----~ip~~l-~~l~ 823 (1025)
++|.++ +.+|..+..++.|+.|+|++|.+++. +|..+ +.+++|++|+|++|.+++ .+|..+ .+++
T Consensus 224 s~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~ 303 (386)
T 2ca6_A 224 QDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMP 303 (386)
T ss_dssp CSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCT
T ss_pred cCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCC
Confidence 999997 77888999999999999999999877 56666 448999999999999998 588888 6689
Q ss_pred CCCEEECcCCcccccCC
Q 047190 824 LLSVMDLSYNNFSGKIP 840 (1025)
Q Consensus 824 ~L~~Ldls~N~l~g~ip 840 (1025)
+|++|++++|++++..|
T Consensus 304 ~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 304 DLLFLELNGNRFSEEDD 320 (386)
T ss_dssp TCCEEECTTSBSCTTSH
T ss_pred CceEEEccCCcCCcchh
Confidence 99999999999998764
No 83
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.87 E-value=3e-23 Score=234.56 Aligned_cols=255 Identities=24% Similarity=0.209 Sum_probs=153.7
Q ss_pred eccCCcccccccccccccCCcccEEEccCccccccCC----CcccCCC-CCCEEEcCCCcccccCCcccccc-----cCC
Q 047190 540 NLSKNKFSGSISFLCSISSHLLTYLDLSNNLLSGRLP----DCWFQFD-SLAILNLANNSFFGEIPDSMSFL-----RSI 609 (1025)
Q Consensus 540 ~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p----~~~~~l~-~L~~L~Ls~N~l~~~~p~~~~~l-----~~L 609 (1025)
+++.|.+++.++.... ..++|++|++++|.+++..+ ..+.+++ +|++|+|++|.+++..+..+..+ ++|
T Consensus 4 ~ls~n~~~~~~~~~~~-~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 4 KLTLHPGSNPVEEFTS-IPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp ECCCCTTCCHHHHHHT-SCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred ccccccchHHHHHHHh-CCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 3444444444433222 12447777777777765555 5566666 67777777777776666666554 677
Q ss_pred CEEEcccCcccccCCcc----ccCC-CCccEEeCCCCcCccccChhhhhc----CCCCcEEEeecCcCcccCcc----cc
Q 047190 610 GSLSLYNNSLSGGLPSF----FMNG-SQLTLMDLGKNGLSGEIPTWIGES----LPNLVVLSLRSNKFHGNIPF----QL 676 (1025)
Q Consensus 610 ~~L~L~~N~l~~~~p~~----~~~l-~~L~~L~Ls~N~l~g~ip~~~~~~----l~~L~~L~L~~N~l~~~~p~----~l 676 (1025)
++|++++|++++..+.. +..+ ++|++|++++|++++..+..+... .++|++|+|++|.+++..+. .+
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l 162 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQIL 162 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHH
Confidence 77777777777655543 3333 677777777777764444443321 24777777777777754333 33
Q ss_pred cccC-cccEEEccccccccccCccccCccccccccccCcccccccccccccccccceeEeecccCCccceeeccc-ccee
Q 047190 677 CYLS-HIQILDLSLNNISGIIPKCFHNFTAMTKEKSSNLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSIL-GLIK 754 (1025)
Q Consensus 677 ~~l~-~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~ 754 (1025)
..++ +|++|+|++|++++..+..+...-. .. ..|+
T Consensus 163 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~-------------------------------------------~~~~~L~ 199 (362)
T 3goz_A 163 AAIPANVNSLNLRGNNLASKNCAELAKFLA-------------------------------------------SIPASVT 199 (362)
T ss_dssp HTSCTTCCEEECTTSCGGGSCHHHHHHHHH-------------------------------------------TSCTTCC
T ss_pred hcCCccccEeeecCCCCchhhHHHHHHHHH-------------------------------------------hCCCCCC
Confidence 4444 7777777777777655543332100 01 1336
Q ss_pred EEEcccCCCCCc----ChhhHhhc-ccCCeEeccCccccccCC----CCCCCCCCccEEeCCCCcCCCcCc-------cc
Q 047190 755 IIDLSSNKLGGK----VLEEIMDL-VGLVALNLSNNNLTGQIT----PRIGQLKSLDFLDLSRNHFFGGIP-------SS 818 (1025)
Q Consensus 755 ~LdLs~N~l~~~----ip~~~~~l-~~L~~L~Ls~N~l~g~ip----~~~~~l~~L~~LdLs~N~l~g~ip-------~~ 818 (1025)
.|||++|++++. ++..+..+ +.|++|+|++|.+++..+ ..+..+++|+.|+|++|.+++..+ ..
T Consensus 200 ~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~ 279 (362)
T 3goz_A 200 SLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAA 279 (362)
T ss_dssp EEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTT
T ss_pred EEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHH
Confidence 777777777653 44455553 477777777777776543 334566777777777777554433 35
Q ss_pred ccCCCCCCEEECcCCccccc
Q 047190 819 LSRLRLLSVMDLSYNNFSGK 838 (1025)
Q Consensus 819 l~~l~~L~~Ldls~N~l~g~ 838 (1025)
+..++.|+.||+++|++.+.
T Consensus 280 ~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 280 FPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp STTCCEEEEECTTSCBCCGG
T ss_pred hccCCceEEEecCCCcCCCc
Confidence 56667777777777777655
No 84
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.86 E-value=8.6e-22 Score=210.36 Aligned_cols=192 Identities=22% Similarity=0.223 Sum_probs=124.1
Q ss_pred CccEEeCCCCcCccccChhhhhcCCCCcEEEeecCcCcccCcccccccCcccEEEccccccccccCccccCccccccccc
Q 047190 632 QLTLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPKCFHNFTAMTKEKS 711 (1025)
Q Consensus 632 ~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~ 711 (1025)
+|+.|+|++|++++..|..+. .+++|++|+|++|++++..|..+..+++|++|+|++|++++..|..|..+++|
T Consensus 36 ~l~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L----- 109 (251)
T 3m19_A 36 DTEKLDLQSTGLATLSDATFR-GLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQL----- 109 (251)
T ss_dssp TCCEEECTTSCCCCCCTTTTT-TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC-----
T ss_pred CCCEEEccCCCcCccCHhHhc-CcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCC-----
Confidence 455555555555533333333 45555555555555555555555666666666666666665555555554444
Q ss_pred cCcccccccccccccccccceeEeecccCCccceeeccccceeEEEcccCCCCCcChhhHhhcccCCeEeccCccccccC
Q 047190 712 SNLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQI 791 (1025)
Q Consensus 712 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~i 791 (1025)
+.|+|++|++++..+..+..+++|++|+|++|+|++..
T Consensus 110 ------------------------------------------~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 147 (251)
T 3m19_A 110 ------------------------------------------DKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIP 147 (251)
T ss_dssp ------------------------------------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred ------------------------------------------CEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccC
Confidence 66677777777666666777888888999999998888
Q ss_pred CCCCCCCCCccEEeCCCCcCCCcCcccccCCCCCCEEECcCCcccccCCCCCCCCCc------CCCCcCCCCCCCCCCCC
Q 047190 792 TPRIGQLKSLDFLDLSRNHFFGGIPSSLSRLRLLSVMDLSYNNFSGKIPKGTQLQRF------GASTYAGNPELCGLPLP 865 (1025)
Q Consensus 792 p~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~Ldls~N~l~g~ip~~~~~~~~------~~~~~~gN~~lcg~~~~ 865 (1025)
+..|+.+++|++|||++|++++..|..+..+++|+.|++++|+++|..+....+..+ ......|+ .+|+.+..
T Consensus 148 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~ 226 (251)
T 3m19_A 148 AGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRCEILYLSQWIRENSNKVKDGTGQ-NLHESPDG 226 (251)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTTSTTHHHHHHHHHHSGGGBCC--------CCGGG
T ss_pred HHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCCccccHHHHHHHHhcccceeeccCc-ccccCCCc
Confidence 878999999999999999999888888899999999999999998874432111111 01123344 36777777
Q ss_pred CCCCCCC
Q 047190 866 NKCLDEE 872 (1025)
Q Consensus 866 ~~C~~~~ 872 (1025)
..|..+.
T Consensus 227 ~~C~~~~ 233 (251)
T 3m19_A 227 VTCSDGK 233 (251)
T ss_dssp CBBTTSC
T ss_pred CccCCCc
Confidence 7886653
No 85
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.86 E-value=1.1e-22 Score=224.70 Aligned_cols=201 Identities=25% Similarity=0.288 Sum_probs=152.7
Q ss_pred ccCCCEEEcccCcccccCCccc--cCCCCccEEeCCCCcCccccC----hhhhhcCCCCcEEEeecCcCcccCccccccc
Q 047190 606 LRSIGSLSLYNNSLSGGLPSFF--MNGSQLTLMDLGKNGLSGEIP----TWIGESLPNLVVLSLRSNKFHGNIPFQLCYL 679 (1025)
Q Consensus 606 l~~L~~L~L~~N~l~~~~p~~~--~~l~~L~~L~Ls~N~l~g~ip----~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l 679 (1025)
+++|++|++++|.+++..|..+ ..+++|++|++++|++++..| ..+. .+++|++|+|++|++.+..|..+..+
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~-~~~~L~~L~Ls~n~l~~~~~~~~~~l 168 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW-LKPGLKVLSIAQAHSPAFSCEQVRAF 168 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT-BCSCCCEEEEECCSSCCCCTTSCCCC
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh-hccCCCEEEeeCCCcchhhHHHhccC
Confidence 4557777777777777776666 677777777777777776544 2333 58889999999999988888888889
Q ss_pred CcccEEEccccccccc--c--CccccCccccccccccCcccccccccccccccccceeEeecccCCccceeeccccceeE
Q 047190 680 SHIQILDLSLNNISGI--I--PKCFHNFTAMTKEKSSNLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKI 755 (1025)
Q Consensus 680 ~~L~~L~Ls~N~l~~~--~--p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 755 (1025)
++|++|+|++|++.+. + +.+++.+++| +.
T Consensus 169 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L-----------------------------------------------~~ 201 (310)
T 4glp_A 169 PALTSLDLSDNPGLGERGLMAALCPHKFPAI-----------------------------------------------QN 201 (310)
T ss_dssp TTCCEEECCSCTTCHHHHHHTTSCTTSSCCC-----------------------------------------------CS
T ss_pred CCCCEEECCCCCCccchhhhHHHhhhcCCCC-----------------------------------------------CE
Confidence 9999999999988753 2 2223444444 77
Q ss_pred EEcccCCCCCc--Chh-hHhhcccCCeEeccCccccccCCCCCCCC---CCccEEeCCCCcCCCcCcccccCCCCCCEEE
Q 047190 756 IDLSSNKLGGK--VLE-EIMDLVGLVALNLSNNNLTGQITPRIGQL---KSLDFLDLSRNHFFGGIPSSLSRLRLLSVMD 829 (1025)
Q Consensus 756 LdLs~N~l~~~--ip~-~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l---~~L~~LdLs~N~l~g~ip~~l~~l~~L~~Ld 829 (1025)
|+|++|+++.. .+. .+++++.|++|||++|++++.+|..++.+ ++|++|+|++|+++ .+|..+. ++|+.||
T Consensus 202 L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~ 278 (310)
T 4glp_A 202 LALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLD 278 (310)
T ss_dssp CBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEE
T ss_pred EECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEE
Confidence 88999998732 222 35788999999999999999999888887 69999999999999 6788775 7999999
Q ss_pred CcCCcccccCCCCCCCCCcCCCCcCCCCC
Q 047190 830 LSYNNFSGKIPKGTQLQRFGASTYAGNPE 858 (1025)
Q Consensus 830 ls~N~l~g~ip~~~~~~~~~~~~~~gN~~ 858 (1025)
+++|++++. |....+..+....+.||+.
T Consensus 279 Ls~N~l~~~-~~~~~l~~L~~L~L~~N~l 306 (310)
T 4glp_A 279 LSSNRLNRA-PQPDELPEVDNLTLDGNPF 306 (310)
T ss_dssp CCSCCCCSC-CCTTSCCCCSCEECSSTTT
T ss_pred CCCCcCCCC-chhhhCCCccEEECcCCCC
Confidence 999999983 3333455555556788864
No 86
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.86 E-value=1.2e-21 Score=207.55 Aligned_cols=196 Identities=20% Similarity=0.174 Sum_probs=115.3
Q ss_pred CCCEEEcCCCcccccCCcccccccCCCEEEcccCc-ccccCCccccCCCCccEEeCCC-CcCccccChhhhhcCCCCcEE
Q 047190 584 SLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNS-LSGGLPSFFMNGSQLTLMDLGK-NGLSGEIPTWIGESLPNLVVL 661 (1025)
Q Consensus 584 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~-l~~~~p~~~~~l~~L~~L~Ls~-N~l~g~ip~~~~~~l~~L~~L 661 (1025)
+|++|++++|++++..+..|..+++|++|++++|+ +++..+..|.++++|++|++++ |+++ .+|...+..+++|++|
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~-~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLT-YIDPDALKELPLLKFL 110 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCC-EECTTSEECCTTCCEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCee-EcCHHHhCCCCCCCEE
Confidence 56666666666665555555556666666666664 5555555566666666666665 6665 3333322246666666
Q ss_pred EeecCcCcccCcccccccCccc---EEEcccc-ccccccCccccCccccccccccCcccccccccccccccccceeEeec
Q 047190 662 SLRSNKFHGNIPFQLCYLSHIQ---ILDLSLN-NISGIIPKCFHNFTAMTKEKSSNLSIISNYYYNLGLRGMLMPLIFFD 737 (1025)
Q Consensus 662 ~L~~N~l~~~~p~~l~~l~~L~---~L~Ls~N-~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 737 (1025)
++++|++++ +|. +..+++|+ +|++++| .+++..+..|..+++|
T Consensus 111 ~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L------------------------------- 157 (239)
T 2xwt_C 111 GIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNE------------------------------- 157 (239)
T ss_dssp EEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSS-------------------------------
T ss_pred eCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcc-------------------------------
Confidence 666666654 443 55555555 6666666 6655544445554444
Q ss_pred ccCCccceeecccccee-EEEcccCCCCCcChhhHhhcccCCeEeccCcc-ccccCCCCCCCC-CCccEEeCCCCcCCCc
Q 047190 738 TWKGGQYEYKSILGLIK-IIDLSSNKLGGKVLEEIMDLVGLVALNLSNNN-LTGQITPRIGQL-KSLDFLDLSRNHFFGG 814 (1025)
Q Consensus 738 ~~~~~~~~~~~~~~~l~-~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls~N~-l~g~ip~~~~~l-~~L~~LdLs~N~l~g~ 814 (1025)
+ .|++++|+++ .+|......++|+.|+|++|+ +++..+..|+.+ ++|+.||+++|++++.
T Consensus 158 ----------------~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l 220 (239)
T 2xwt_C 158 ----------------TLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTAL 220 (239)
T ss_dssp ----------------EEEEECCSCCCC-EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCC
T ss_pred ----------------eeEEEcCCCCCc-ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccC
Confidence 5 5666666666 333332222667777777773 776666667777 7777777777777754
Q ss_pred CcccccCCCCCCEEECcCC
Q 047190 815 IPSSLSRLRLLSVMDLSYN 833 (1025)
Q Consensus 815 ip~~l~~l~~L~~Ldls~N 833 (1025)
.+. .++.|+.|+++++
T Consensus 221 ~~~---~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 221 PSK---GLEHLKELIARNT 236 (239)
T ss_dssp CCT---TCTTCSEEECTTC
T ss_pred Chh---HhccCceeeccCc
Confidence 333 4566777777665
No 87
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.86 E-value=2.9e-22 Score=226.51 Aligned_cols=214 Identities=23% Similarity=0.237 Sum_probs=133.1
Q ss_pred cccEEEccCccccccCCCcccCC-----CCCCEEEcCCCcccccCCcccccc-----cCCCEEEcccCcccccCCccc--
Q 047190 560 LLTYLDLSNNLLSGRLPDCWFQF-----DSLAILNLANNSFFGEIPDSMSFL-----RSIGSLSLYNNSLSGGLPSFF-- 627 (1025)
Q Consensus 560 ~L~~L~Ls~N~l~~~~p~~~~~l-----~~L~~L~Ls~N~l~~~~p~~~~~l-----~~L~~L~L~~N~l~~~~p~~~-- 627 (1025)
+|++|+|++|.+++..+..+..+ ++|++|+|++|.+++..+..+... ++|++|++++|++++..+..+
T Consensus 52 ~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~ 131 (362)
T 3goz_A 52 SVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQ 131 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHH
T ss_pred ceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHH
Confidence 45555555555555544444443 566666666666665554433332 566666666666665544433
Q ss_pred --cC-CCCccEEeCCCCcCccc----cChhhhhcCC-CCcEEEeecCcCcccCcccccc----c-CcccEEEcccccccc
Q 047190 628 --MN-GSQLTLMDLGKNGLSGE----IPTWIGESLP-NLVVLSLRSNKFHGNIPFQLCY----L-SHIQILDLSLNNISG 694 (1025)
Q Consensus 628 --~~-l~~L~~L~Ls~N~l~g~----ip~~~~~~l~-~L~~L~L~~N~l~~~~p~~l~~----l-~~L~~L~Ls~N~l~~ 694 (1025)
.. .++|++|+|++|++++. ++..+. .++ +|++|+|++|++++..+..+.. + ++|++|+|++|.+++
T Consensus 132 ~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~-~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~ 210 (362)
T 3goz_A 132 AFSNLPASITSLNLRGNDLGIKSSDELIQILA-AIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGL 210 (362)
T ss_dssp HHTTSCTTCCEEECTTSCGGGSCHHHHHHHHH-TSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGG
T ss_pred HHHhCCCceeEEEccCCcCCHHHHHHHHHHHh-cCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCCh
Confidence 23 35777777777777643 233333 233 7777777777777666654443 3 578888888887775
Q ss_pred cc----CccccCccccccccccCcccccccccccccccccceeEeecccCCccceeeccccceeEEEcccCCCCCcChhh
Q 047190 695 II----PKCFHNFTAMTKEKSSNLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEE 770 (1025)
Q Consensus 695 ~~----p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~~~ip~~ 770 (1025)
.. +..+... .+.|+.|||++|++++..+..
T Consensus 211 ~~~~~l~~~l~~~----------------------------------------------~~~L~~L~Ls~N~l~~~~~~~ 244 (362)
T 3goz_A 211 KSYAELAYIFSSI----------------------------------------------PNHVVSLNLCLNCLHGPSLEN 244 (362)
T ss_dssp SCHHHHHHHHHHS----------------------------------------------CTTCCEEECCSSCCCCCCHHH
T ss_pred hHHHHHHHHHhcC----------------------------------------------CCCceEEECcCCCCCcHHHHH
Confidence 32 2222111 123477888888888766544
Q ss_pred ----HhhcccCCeEeccCcccccc-------CCCCCCCCCCccEEeCCCCcCCCcCccccc
Q 047190 771 ----IMDLVGLVALNLSNNNLTGQ-------ITPRIGQLKSLDFLDLSRNHFFGGIPSSLS 820 (1025)
Q Consensus 771 ----~~~l~~L~~L~Ls~N~l~g~-------ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~ 820 (1025)
+..++.|++|+|++|.+.+. ++..+..+++|+.||+++|++.+..|..+.
T Consensus 245 l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~~~~~ 305 (362)
T 3goz_A 245 LKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPIS 305 (362)
T ss_dssp HHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGCHHHH
T ss_pred HHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcchHHHH
Confidence 35567888888888885433 345788899999999999999877554443
No 88
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.85 E-value=5e-21 Score=210.87 Aligned_cols=192 Identities=21% Similarity=0.298 Sum_probs=110.7
Q ss_pred CCcccEEEccCccccccCCCcccCCCCCCEEEcCCCcccccCCcccccccCCCEEEcccCcccccCCccccCCCCccEEe
Q 047190 558 SHLLTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMD 637 (1025)
Q Consensus 558 ~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ 637 (1025)
+++|+.|++++|.++. +| .+..+++|++|++++|.+++..+ +..+++|++|++++|++++. ..+..+++|+.|+
T Consensus 40 l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~ 113 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLD 113 (308)
T ss_dssp HHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEEE
T ss_pred cCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEEE
Confidence 3556777777776663 33 46666677777777776664433 66666666666666666643 2466666666666
Q ss_pred CCCCcCccccChhhhhcCCCCcEEEeecCcCcccCcccccccCcccEEEccccccccccCccccCccccccccccCcccc
Q 047190 638 LGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPKCFHNFTAMTKEKSSNLSII 717 (1025)
Q Consensus 638 Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~ 717 (1025)
+++|+++ .+|. +. .+++|++|++++|++++..+ +..+++|+.|++++|.+++..+ +..+++|
T Consensus 114 l~~n~l~-~~~~-l~-~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L----------- 175 (308)
T 1h6u_A 114 LTSTQIT-DVTP-LA-GLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKL----------- 175 (308)
T ss_dssp CTTSCCC-CCGG-GT-TCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTC-----------
T ss_pred CCCCCCC-Cchh-hc-CCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCC-----------
Confidence 6666666 3443 33 46666666666666664433 5566666666666666654322 3333332
Q ss_pred cccccccccccccceeEeecccCCccceeeccccceeEEEcccCCCCCcChhhHhhcccCCeEeccCccccccCCCCCCC
Q 047190 718 SNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPRIGQ 797 (1025)
Q Consensus 718 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~ 797 (1025)
+.|++++|++++..+ +..+++|+.|+|++|++++..| +..
T Consensus 176 ------------------------------------~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~ 215 (308)
T 1h6u_A 176 ------------------------------------TTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LAN 215 (308)
T ss_dssp ------------------------------------CEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTT
T ss_pred ------------------------------------CEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccC
Confidence 555555555554433 5555555555555555554442 555
Q ss_pred CCCccEEeCCCCcCCC
Q 047190 798 LKSLDFLDLSRNHFFG 813 (1025)
Q Consensus 798 l~~L~~LdLs~N~l~g 813 (1025)
+++|+.|+|++|.+++
T Consensus 216 l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 216 TSNLFIVTLTNQTITN 231 (308)
T ss_dssp CTTCCEEEEEEEEEEC
T ss_pred CCCCCEEEccCCeeec
Confidence 5555555555555554
No 89
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.85 E-value=2e-22 Score=230.11 Aligned_cols=189 Identities=21% Similarity=0.283 Sum_probs=126.7
Q ss_pred cCCCCCCEEEcCCCcccc----cCCcccccccCCCEEEcccCcccccCCcc----ccCC---------CCccEEeCCCCc
Q 047190 580 FQFDSLAILNLANNSFFG----EIPDSMSFLRSIGSLSLYNNSLSGGLPSF----FMNG---------SQLTLMDLGKNG 642 (1025)
Q Consensus 580 ~~l~~L~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~L~~N~l~~~~p~~----~~~l---------~~L~~L~Ls~N~ 642 (1025)
..+++|++|+|++|.+++ .+|..+..+++|++|+|++|.+++..+.. +..+ ++|++|++++|+
T Consensus 91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~ 170 (386)
T 2ca6_A 91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR 170 (386)
T ss_dssp TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC
T ss_pred hhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC
Confidence 445555566666655554 24445555566666666666654332222 2222 677777777777
Q ss_pred Cc-cccC---hhhhhcCCCCcEEEeecCcCcc-----cCcccccccCcccEEEccccccc----cccCccccCccccccc
Q 047190 643 LS-GEIP---TWIGESLPNLVVLSLRSNKFHG-----NIPFQLCYLSHIQILDLSLNNIS----GIIPKCFHNFTAMTKE 709 (1025)
Q Consensus 643 l~-g~ip---~~~~~~l~~L~~L~L~~N~l~~-----~~p~~l~~l~~L~~L~Ls~N~l~----~~~p~~~~~l~~l~~~ 709 (1025)
++ +.+| ..+. .+++|++|+|++|+++. ..|..+..+++|+.|+|++|.++ +.+|..+..+++|
T Consensus 171 l~~~~~~~l~~~l~-~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L--- 246 (386)
T 2ca6_A 171 LENGSMKEWAKTFQ-SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNL--- 246 (386)
T ss_dssp CTGGGHHHHHHHHH-HCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTC---
T ss_pred CCcHHHHHHHHHHH-hCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCc---
Confidence 76 3344 2333 57777888888777762 34446777788888888888875 4556555554444
Q ss_pred cccCcccccccccccccccccceeEeecccCCccceeeccccceeEEEcccCCCCCc----ChhhHhh--cccCCeEecc
Q 047190 710 KSSNLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGK----VLEEIMD--LVGLVALNLS 783 (1025)
Q Consensus 710 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~~~----ip~~~~~--l~~L~~L~Ls 783 (1025)
+.|+|++|++++. +|..+.. ++.|+.|+|+
T Consensus 247 --------------------------------------------~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~ 282 (386)
T 2ca6_A 247 --------------------------------------------RELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQ 282 (386)
T ss_dssp --------------------------------------------CEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECC
T ss_pred --------------------------------------------CEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECc
Confidence 7788888888765 5666643 8889999999
Q ss_pred Cccccc----cCCCCC-CCCCCccEEeCCCCcCCCcCc
Q 047190 784 NNNLTG----QITPRI-GQLKSLDFLDLSRNHFFGGIP 816 (1025)
Q Consensus 784 ~N~l~g----~ip~~~-~~l~~L~~LdLs~N~l~g~ip 816 (1025)
+|.+++ .+|..+ .++++|++|+|++|++++..|
T Consensus 283 ~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 283 YNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp SSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred CCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 999998 577777 668999999999999998875
No 90
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.85 E-value=3.3e-22 Score=223.87 Aligned_cols=254 Identities=19% Similarity=0.225 Sum_probs=198.3
Q ss_pred CCCceeeccCCcccccccccccccCCcccEEEccCccccccCCCcccCCCCCCEEEcCCCccccc-CCcccccccCCCEE
Q 047190 534 PNVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGE-IPDSMSFLRSIGSL 612 (1025)
Q Consensus 534 ~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L 612 (1025)
..++.++++++.+.... ......+.++.|++++|.+.+..+. +..+++|++|++++|.+++. +|..+..+++|++|
T Consensus 47 ~~~~~l~l~~~~~~~~~--~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L 123 (336)
T 2ast_B 47 SLWQTLDLTGKNLHPDV--TGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL 123 (336)
T ss_dssp TTSSEEECTTCBCCHHH--HHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred hhheeeccccccCCHHH--HHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEE
Confidence 34678888888776321 1111126789999999999987666 55789999999999998866 77788889999999
Q ss_pred EcccCcccccCCccccCCCCccEEeCCCC-cCccc-cChhhhhcCCCCcEEEeecC-cCccc-CcccccccC-cccEEEc
Q 047190 613 SLYNNSLSGGLPSFFMNGSQLTLMDLGKN-GLSGE-IPTWIGESLPNLVVLSLRSN-KFHGN-IPFQLCYLS-HIQILDL 687 (1025)
Q Consensus 613 ~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N-~l~g~-ip~~~~~~l~~L~~L~L~~N-~l~~~-~p~~l~~l~-~L~~L~L 687 (1025)
++++|.+++..+..+..+++|++|++++| .+++. +|..+. .+++|++|++++| .+++. ++..+..++ +|++|++
T Consensus 124 ~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~-~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l 202 (336)
T 2ast_B 124 SLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLS-SCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNL 202 (336)
T ss_dssp ECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHH-HCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEEC
T ss_pred eCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHh-cCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEe
Confidence 99999999888888999999999999999 68763 665555 6999999999999 88865 577788899 9999999
Q ss_pred ccc--ccc-cccCccccCccccccccccCcccccccccccccccccceeEeecccCCccceeeccccceeEEEcccCC-C
Q 047190 688 SLN--NIS-GIIPKCFHNFTAMTKEKSSNLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNK-L 763 (1025)
Q Consensus 688 s~N--~l~-~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~-l 763 (1025)
++| .++ +.+|..+..+++| +.|++++|. +
T Consensus 203 ~~~~~~~~~~~l~~~~~~~~~L-----------------------------------------------~~L~l~~~~~l 235 (336)
T 2ast_B 203 SGYRKNLQKSDLSTLVRRCPNL-----------------------------------------------VHLDLSDSVML 235 (336)
T ss_dssp CSCGGGSCHHHHHHHHHHCTTC-----------------------------------------------SEEECTTCTTC
T ss_pred CCCcccCCHHHHHHHHhhCCCC-----------------------------------------------CEEeCCCCCcC
Confidence 999 455 3455544444444 889999999 8
Q ss_pred CCcChhhHhhcccCCeEeccCcc-ccccCCCCCCCCCCccEEeCCCCcCCCcCcccccCC-CCCCEEECcCCcccccCCC
Q 047190 764 GGKVLEEIMDLVGLVALNLSNNN-LTGQITPRIGQLKSLDFLDLSRNHFFGGIPSSLSRL-RLLSVMDLSYNNFSGKIPK 841 (1025)
Q Consensus 764 ~~~ip~~~~~l~~L~~L~Ls~N~-l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l-~~L~~Ldls~N~l~g~ip~ 841 (1025)
++..+..+..+++|+.|++++|. ++......++.+++|+.|++++| ++.. .+..+ ..|..|++++|+++|..|.
T Consensus 236 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~---~~~~l~~~l~~L~l~~n~l~~~~~~ 311 (336)
T 2ast_B 236 KNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDG---TLQLLKEALPHLQINCSHFTTIARP 311 (336)
T ss_dssp CGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTT---CHHHHHHHSTTSEESCCCSCCTTCS
T ss_pred CHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHH---HHHHHHhhCcceEEecccCccccCC
Confidence 88888899999999999999995 33322236788999999999999 4432 33333 3467778999999998885
Q ss_pred C
Q 047190 842 G 842 (1025)
Q Consensus 842 ~ 842 (1025)
.
T Consensus 312 ~ 312 (336)
T 2ast_B 312 T 312 (336)
T ss_dssp S
T ss_pred c
Confidence 3
No 91
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.85 E-value=6.5e-21 Score=201.99 Aligned_cols=197 Identities=16% Similarity=0.140 Sum_probs=169.4
Q ss_pred CcccEEEccCccccccCCCcccCCCCCCEEEcCCCc-ccccCCcccccccCCCEEEccc-CcccccCCccccCCCCccEE
Q 047190 559 HLLTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNS-FFGEIPDSMSFLRSIGSLSLYN-NSLSGGLPSFFMNGSQLTLM 636 (1025)
Q Consensus 559 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~L~~-N~l~~~~p~~~~~l~~L~~L 636 (1025)
++|++|++++|++++..+..|.++++|++|++++|+ +++..+..|..+++|++|++++ |++++..+..|.++++|++|
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 468999999999998878889999999999999997 8877777899999999999998 99998888899999999999
Q ss_pred eCCCCcCccccChhhhhcCCCCc---EEEeecC-cCcccCcccccccCccc-EEEccccccccccCc-cccCcccccccc
Q 047190 637 DLGKNGLSGEIPTWIGESLPNLV---VLSLRSN-KFHGNIPFQLCYLSHIQ-ILDLSLNNISGIIPK-CFHNFTAMTKEK 710 (1025)
Q Consensus 637 ~Ls~N~l~g~ip~~~~~~l~~L~---~L~L~~N-~l~~~~p~~l~~l~~L~-~L~Ls~N~l~~~~p~-~~~~l~~l~~~~ 710 (1025)
++++|+++ .+|. +. .+++|+ +|++++| ++++..+..+..+++|+ .|++++|+++ .+|. .+.. ++
T Consensus 111 ~l~~n~l~-~lp~-~~-~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~-~~----- 180 (239)
T 2xwt_C 111 GIFNTGLK-MFPD-LT-KVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNG-TK----- 180 (239)
T ss_dssp EEEEECCC-SCCC-CT-TCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTT-CE-----
T ss_pred eCCCCCCc-cccc-cc-cccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCC-CC-----
Confidence 99999998 4887 44 688888 9999999 99988888899999999 9999999998 4443 3322 33
Q ss_pred ccCcccccccccccccccccceeEeecccCCccceeeccccceeEEEcccCC-CCCcChhhHhhc-ccCCeEeccCcccc
Q 047190 711 SSNLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNK-LGGKVLEEIMDL-VGLVALNLSNNNLT 788 (1025)
Q Consensus 711 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~-l~~~ip~~~~~l-~~L~~L~Ls~N~l~ 788 (1025)
|+.|+|++|+ +++..+..|.++ ++|+.|++++|+++
T Consensus 181 ------------------------------------------L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~ 218 (239)
T 2xwt_C 181 ------------------------------------------LDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT 218 (239)
T ss_dssp ------------------------------------------EEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC
T ss_pred ------------------------------------------CCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccc
Confidence 3899999995 998888889999 99999999999999
Q ss_pred ccCCCCCCCCCCccEEeCCCCc
Q 047190 789 GQITPRIGQLKSLDFLDLSRNH 810 (1025)
Q Consensus 789 g~ip~~~~~l~~L~~LdLs~N~ 810 (1025)
+..+. .+++|+.|+++++.
T Consensus 219 ~l~~~---~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 219 ALPSK---GLEHLKELIARNTW 237 (239)
T ss_dssp CCCCT---TCTTCSEEECTTC-
T ss_pred cCChh---HhccCceeeccCcc
Confidence 65444 67789999998763
No 92
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.85 E-value=6.1e-21 Score=210.16 Aligned_cols=212 Identities=20% Similarity=0.318 Sum_probs=178.8
Q ss_pred ccEEEccCccccccCCCcccCCCCCCEEEcCCCcccccCCcccccccCCCEEEcccCcccccCCccccCCCCccEEeCCC
Q 047190 561 LTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGK 640 (1025)
Q Consensus 561 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~ 640 (1025)
+..+.+..+.+++.++ +..+++|+.|++++|.++. +| .+..+++|++|++++|.+++..+ +..+++|++|++++
T Consensus 21 ~~~~~l~~~~~~~~~~--~~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~ 94 (308)
T 1h6u_A 21 AIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSG 94 (308)
T ss_dssp HHHHHTTCSSTTSEEC--HHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCS
T ss_pred HHHHHhCCCCcCceec--HHHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccC
Confidence 3344556666654432 4568899999999999985 44 68899999999999999997655 99999999999999
Q ss_pred CcCccccChhhhhcCCCCcEEEeecCcCcccCcccccccCcccEEEccccccccccCccccCccccccccccCccccccc
Q 047190 641 NGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPKCFHNFTAMTKEKSSNLSIISNY 720 (1025)
Q Consensus 641 N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~ 720 (1025)
|+++ .+| .+. .+++|++|++++|++++. + .+..+++|+.|++++|.+++..+ ++.+++|
T Consensus 95 n~l~-~~~-~~~-~l~~L~~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L-------------- 153 (308)
T 1h6u_A 95 NPLK-NVS-AIA-GLQSIKTLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNL-------------- 153 (308)
T ss_dssp CCCS-CCG-GGT-TCTTCCEEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTC--------------
T ss_pred CcCC-Cch-hhc-CCCCCCEEECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCc--------------
Confidence 9998 455 455 699999999999999874 3 38999999999999999986544 5444444
Q ss_pred ccccccccccceeEeecccCCccceeeccccceeEEEcccCCCCCcChhhHhhcccCCeEeccCccccccCCCCCCCCCC
Q 047190 721 YYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPRIGQLKS 800 (1025)
Q Consensus 721 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~ 800 (1025)
+.|+|++|++++..+ +..+++|+.|+|++|++++..+ +..+++
T Consensus 154 ---------------------------------~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~ 196 (308)
T 1h6u_A 154 ---------------------------------QYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISP--LASLPN 196 (308)
T ss_dssp ---------------------------------CEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTT
T ss_pred ---------------------------------cEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcChh--hcCCCC
Confidence 899999999998655 9999999999999999998765 899999
Q ss_pred ccEEeCCCCcCCCcCcccccCCCCCCEEECcCCccccc
Q 047190 801 LDFLDLSRNHFFGGIPSSLSRLRLLSVMDLSYNNFSGK 838 (1025)
Q Consensus 801 L~~LdLs~N~l~g~ip~~l~~l~~L~~Ldls~N~l~g~ 838 (1025)
|++|+|++|++++..| +..+++|+.|++++|++++.
T Consensus 197 L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~~ 232 (308)
T 1h6u_A 197 LIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQ 232 (308)
T ss_dssp CCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEECC
T ss_pred CCEEEccCCccCcccc--ccCCCCCCEEEccCCeeecC
Confidence 9999999999998764 89999999999999999873
No 93
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.84 E-value=2.5e-20 Score=198.96 Aligned_cols=180 Identities=21% Similarity=0.178 Sum_probs=112.4
Q ss_pred cccEEEccCccccccCCCcccCCCCCCEEEcCCCcccccCCcccccccCCCEEEcccCcccccCCccccCCCCccEEeCC
Q 047190 560 LLTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLG 639 (1025)
Q Consensus 560 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls 639 (1025)
..++++++++.++ .+|..+. ++++.|+|++|.+++..+..+..+++|++|++++|.+++..+..|..+++|++|+|+
T Consensus 15 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 15 GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 3566777777776 4554443 466666666666666666566666666666666666665555555555566666666
Q ss_pred CCcCccccChhhhhcCCCCcEEEeecCcCcccCcccccccCcccEEEccccccccccCccccCccccccccccCcccccc
Q 047190 640 KNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPKCFHNFTAMTKEKSSNLSIISN 719 (1025)
Q Consensus 640 ~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~ 719 (1025)
+|+++ +..+..+..+++|++|+|++|++++..+..|..+++|
T Consensus 92 ~n~l~-------------------------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L------------- 133 (251)
T 3m19_A 92 NNQLA-------------------------SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKL------------- 133 (251)
T ss_dssp TSCCC-------------------------CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC-------------
T ss_pred CCccc-------------------------ccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcc-------------
Confidence 66555 3333334444444444444444444333333333333
Q ss_pred cccccccccccceeEeecccCCccceeeccccceeEEEcccCCCCCcChhhHhhcccCCeEeccCccccccCCCCCCCCC
Q 047190 720 YYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPRIGQLK 799 (1025)
Q Consensus 720 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~ 799 (1025)
+.|+|++|++++..+..+..+++|++|+|++|++++..|..+..++
T Consensus 134 ----------------------------------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 179 (251)
T 3m19_A 134 ----------------------------------KELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLG 179 (251)
T ss_dssp ----------------------------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCT
T ss_pred ----------------------------------cEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCC
Confidence 4555555555555555666777788888888888887777888888
Q ss_pred CccEEeCCCCcCCCc
Q 047190 800 SLDFLDLSRNHFFGG 814 (1025)
Q Consensus 800 ~L~~LdLs~N~l~g~ 814 (1025)
+|+.|+|++|.+++.
T Consensus 180 ~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 180 KLQTITLFGNQFDCS 194 (251)
T ss_dssp TCCEEECCSCCBCTT
T ss_pred CCCEEEeeCCceeCC
Confidence 888888888888876
No 94
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.84 E-value=1.5e-21 Score=218.44 Aligned_cols=211 Identities=17% Similarity=0.197 Sum_probs=144.1
Q ss_pred CcccEEEccCcccccc-CCCcccCCCCCCEEEcCCCcccccCCcccccccCCCEEEcccC-ccccc-CCccccCCCCccE
Q 047190 559 HLLTYLDLSNNLLSGR-LPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNN-SLSGG-LPSFFMNGSQLTL 635 (1025)
Q Consensus 559 ~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N-~l~~~-~p~~~~~l~~L~~ 635 (1025)
++|++|++++|.+++. ++..+..+++|++|++++|.+++..+..+..+++|++|++++| .+++. ++..+.++++|++
T Consensus 93 ~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~ 172 (336)
T 2ast_B 93 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDE 172 (336)
T ss_dssp BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCE
T ss_pred CCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCE
Confidence 5577777777777655 6666777777777777777777666677777777777777777 56652 5566777777888
Q ss_pred EeCCCC-cCccc-cChhhhhcCC-CCcEEEeecC--cCc-ccCcccccccCcccEEEccccc-cccccCccccCcccccc
Q 047190 636 MDLGKN-GLSGE-IPTWIGESLP-NLVVLSLRSN--KFH-GNIPFQLCYLSHIQILDLSLNN-ISGIIPKCFHNFTAMTK 708 (1025)
Q Consensus 636 L~Ls~N-~l~g~-ip~~~~~~l~-~L~~L~L~~N--~l~-~~~p~~l~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~l~~ 708 (1025)
|++++| .+++. ++..+. .++ +|++|+|++| .++ +.+|..+..+++|+.|++++|. +++..+..+..+++|
T Consensus 173 L~l~~~~~l~~~~~~~~~~-~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L-- 249 (336)
T 2ast_B 173 LNLSWCFDFTEKHVQVAVA-HVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYL-- 249 (336)
T ss_dssp EECCCCTTCCHHHHHHHHH-HSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTC--
T ss_pred EcCCCCCCcChHHHHHHHH-hcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCC--
Confidence 888887 77654 455554 577 7888888877 454 4556666777788888888877 665656555555444
Q ss_pred ccccCcccccccccccccccccceeEeecccCCccceeeccccceeEEEcccCC-CCCcChhhHhhcccCCeEeccCccc
Q 047190 709 EKSSNLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNK-LGGKVLEEIMDLVGLVALNLSNNNL 787 (1025)
Q Consensus 709 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~-l~~~ip~~~~~l~~L~~L~Ls~N~l 787 (1025)
+.|++++|. ++......++++++|+.|++++| +
T Consensus 250 ---------------------------------------------~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i 283 (336)
T 2ast_B 250 ---------------------------------------------QHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-V 283 (336)
T ss_dssp ---------------------------------------------CEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-S
T ss_pred ---------------------------------------------CEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-c
Confidence 677777774 33222235777888888888887 2
Q ss_pred cccCCCCCCCCC-CccEEeCCCCcCCCcCcccccC
Q 047190 788 TGQITPRIGQLK-SLDFLDLSRNHFFGGIPSSLSR 821 (1025)
Q Consensus 788 ~g~ip~~~~~l~-~L~~LdLs~N~l~g~ip~~l~~ 821 (1025)
+ ...+..+. +++.|++++|++++..|..+++
T Consensus 284 ~---~~~~~~l~~~l~~L~l~~n~l~~~~~~~~~~ 315 (336)
T 2ast_B 284 P---DGTLQLLKEALPHLQINCSHFTTIARPTIGN 315 (336)
T ss_dssp C---TTCHHHHHHHSTTSEESCCCSCCTTCSSCSS
T ss_pred C---HHHHHHHHhhCcceEEecccCccccCCcccc
Confidence 2 22344443 4777778888888888877664
No 95
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.81 E-value=1.4e-19 Score=213.56 Aligned_cols=189 Identities=23% Similarity=0.332 Sum_probs=137.0
Q ss_pred CcccEEEccCccccccCCCcccCCCCCCEEEcCCCcccccCCcccccccCCCEEEcccCcccccCCccccCCCCccEEeC
Q 047190 559 HLLTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDL 638 (1025)
Q Consensus 559 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 638 (1025)
.+|+.|++++|.+++ +|..+ +++|++|+|++|.++ .+| ..+++|++|++++|++++ +|. +.+ +|+.|+|
T Consensus 59 ~~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~L 127 (571)
T 3cvr_A 59 NQFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDV 127 (571)
T ss_dssp TTCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEEC
T ss_pred CCccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEEC
Confidence 468899999999886 66655 378899999999888 566 346888888888888887 565 554 8888888
Q ss_pred CCCcCccccChhhhhcCCCCcEEEeecCcCcccCcccccccCcccEEEccccccccccCccccCccccccccccCccccc
Q 047190 639 GKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPKCFHNFTAMTKEKSSNLSIIS 718 (1025)
Q Consensus 639 s~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~ 718 (1025)
++|++++ +|. .+++|++|+|++|++++ +|. .+++|+.|+|++|++++ +|. |. ++|
T Consensus 128 s~N~l~~-lp~----~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L------------ 182 (571)
T 3cvr_A 128 DNNQLTM-LPE----LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESL------------ 182 (571)
T ss_dssp CSSCCSC-CCC----CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTC------------
T ss_pred CCCcCCC-CCC----cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCC------------
Confidence 8888884 776 37788888888888886 554 56788888888888876 555 43 333
Q ss_pred ccccccccccccceeEeecccCCccceeeccccceeEEEcccCCCCCcChhhHhhcccC-------CeEeccCccccccC
Q 047190 719 NYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGL-------VALNLSNNNLTGQI 791 (1025)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~~~ip~~~~~l~~L-------~~L~Ls~N~l~g~i 791 (1025)
+.|||++|+|+ .+|. +.. +| +.|+|++|+|+ .+
T Consensus 183 -----------------------------------~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~l 222 (571)
T 3cvr_A 183 -----------------------------------EALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HI 222 (571)
T ss_dssp -----------------------------------CEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CC
T ss_pred -----------------------------------CEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ec
Confidence 67777888777 4454 443 55 77777777777 46
Q ss_pred CCCCCCCCCccEEeCCCCcCCCcCcccccCCC
Q 047190 792 TPRIGQLKSLDFLDLSRNHFFGGIPSSLSRLR 823 (1025)
Q Consensus 792 p~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~ 823 (1025)
|..+..+++|+.|||++|.+++.+|..+..++
T Consensus 223 p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 254 (571)
T 3cvr_A 223 PENILSLDPTCTIILEDNPLSSRIRESLSQQT 254 (571)
T ss_dssp CGGGGGSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred CHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence 66666677777777777777777777666543
No 96
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.81 E-value=9.6e-20 Score=215.05 Aligned_cols=134 Identities=29% Similarity=0.386 Sum_probs=64.6
Q ss_pred CCceeeccCCcccccccccccccCCcccEEEccCccccccCCCcccCCCCCCEEEcCCCcccccCCcccccccCCCEEEc
Q 047190 535 NVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSL 614 (1025)
Q Consensus 535 ~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 614 (1025)
+++.|++++|.+++..... .++|++|+|++|.++ .+| ..+++|++|++++|.+++ +|. +.. +|++|++
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l----~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~L 127 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL----PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDV 127 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC----CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEEC
T ss_pred CccEEEeCCCCCCccCHhH----cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEEC
Confidence 4555555555554422211 134555555555555 334 224455555555555554 333 332 5555555
Q ss_pred ccCcccccCCccccCCCCccEEeCCCCcCccccChhhhhcCCCCcEEEeecCcCcccCcccccccCcccEEEccccccc
Q 047190 615 YNNSLSGGLPSFFMNGSQLTLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNIS 693 (1025)
Q Consensus 615 ~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 693 (1025)
++|++++ +|. .+++|+.|++++|++++ +|. .+++|++|+|++|++++ +|. +. ++|+.|+|++|+|+
T Consensus 128 s~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~----~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~ 193 (571)
T 3cvr_A 128 DNNQLTM-LPE---LPALLEYINADNNQLTM-LPE----LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE 193 (571)
T ss_dssp CSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC----CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS
T ss_pred CCCcCCC-CCC---cCccccEEeCCCCccCc-CCC----cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC
Confidence 5555554 333 34555555555555552 443 24455555555555554 333 33 55555555555555
No 97
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.80 E-value=2.6e-19 Score=185.23 Aligned_cols=137 Identities=21% Similarity=0.208 Sum_probs=78.5
Q ss_pred cEEEccCccccccCCCcccCCCCCCEEEcCCCcccccCCcccccccCCCEEEcccCcccccCCccccCCCCccEEeCCCC
Q 047190 562 TYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGKN 641 (1025)
Q Consensus 562 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N 641 (1025)
+.++.+++.++ .+|..+ .++|++|++++|++++..+..+..+++|++|++++|++++..+..|..+++|++|++++|
T Consensus 10 ~~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 10 TTVECYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence 45666666665 334333 346666677666666555555666666666666666666555555566666666666666
Q ss_pred cCccccChhhhhcCCCCcEEEeecCcCcccCcccccccCcccEEEccccccccccCccccC
Q 047190 642 GLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPKCFHN 702 (1025)
Q Consensus 642 ~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~ 702 (1025)
+++ .+|...+..+++|++|+|++|++++..+..+..+++|++|++++|++++..+..+..
T Consensus 87 ~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~ 146 (208)
T 2o6s_A 87 QLQ-SLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDR 146 (208)
T ss_dssp CCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTT
T ss_pred cCC-ccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhcc
Confidence 666 333333224566666666666666555545555556666666666555444433333
No 98
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.80 E-value=6.4e-19 Score=197.93 Aligned_cols=224 Identities=21% Similarity=0.192 Sum_probs=165.8
Q ss_pred CcccEEEccCccccccCCCcccCCCCCCEEEcCCCcccccCC-cccccccCCCE-EEcccCcccccCCccccCCCCccEE
Q 047190 559 HLLTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIP-DSMSFLRSIGS-LSLYNNSLSGGLPSFFMNGSQLTLM 636 (1025)
Q Consensus 559 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~-L~L~~N~l~~~~p~~~~~l~~L~~L 636 (1025)
+++++|+|++|+|+...+++|.++++|++|+|++|++.+.+| ..|.+++++.+ +.+++|++++..|..|..+++|++|
T Consensus 30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L 109 (350)
T 4ay9_X 30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL 109 (350)
T ss_dssp TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEE
T ss_pred CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccc
Confidence 468889999999986666788999999999999999876554 46778888775 5667789998888899999999999
Q ss_pred eCCCCcCccccChhhhhcCCCCcEEEeec-CcCcccCcccccccC-cccEEEccccccccccCccccCccccccccccCc
Q 047190 637 DLGKNGLSGEIPTWIGESLPNLVVLSLRS-NKFHGNIPFQLCYLS-HIQILDLSLNNISGIIPKCFHNFTAMTKEKSSNL 714 (1025)
Q Consensus 637 ~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~-N~l~~~~p~~l~~l~-~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~ 714 (1025)
++++|+++ .+|...+....++..|++.+ |++....+..+..+. .++.|+|++|+++...+..| ....
T Consensus 110 ~l~~n~l~-~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f-~~~~--------- 178 (350)
T 4ay9_X 110 LISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAF-NGTQ--------- 178 (350)
T ss_dssp EEEEECCS-SCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSS-TTEE---------
T ss_pred cccccccc-cCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhc-cccc---------
Confidence 99999998 45544333566788888866 567666666677764 58889999999985444433 2222
Q ss_pred ccccccccccccccccceeEeecccCCccceeeccccceeEEEccc-CCCCCcChhhHhhcccCCeEeccCccccccCCC
Q 047190 715 SIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSS-NKLGGKVLEEIMDLVGLVALNLSNNNLTGQITP 793 (1025)
Q Consensus 715 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~-N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~ 793 (1025)
++.+++++ |.++...++.|.++++|++|||++|+|+...+.
T Consensus 179 --------------------------------------L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~ 220 (350)
T 4ay9_X 179 --------------------------------------LDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSY 220 (350)
T ss_dssp --------------------------------------EEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSS
T ss_pred --------------------------------------hhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChh
Confidence 27788876 555554456789999999999999999976665
Q ss_pred CCCCCCCccEEeCCCCcCCCcCcccccCCCCCCEEECcCCcc
Q 047190 794 RIGQLKSLDFLDLSRNHFFGGIPSSLSRLRLLSVMDLSYNNF 835 (1025)
Q Consensus 794 ~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~Ldls~N~l 835 (1025)
.+.+ |+.|.+.++.--..+| .+.++++|+.++++++.-
T Consensus 221 ~~~~---L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~~~~ 258 (350)
T 4ay9_X 221 GLEN---LKKLRARSTYNLKKLP-TLEKLVALMEASLTYPSH 258 (350)
T ss_dssp SCTT---CCEEECTTCTTCCCCC-CTTTCCSCCEEECSCHHH
T ss_pred hhcc---chHhhhccCCCcCcCC-CchhCcChhhCcCCCCcc
Confidence 5554 4555544443334566 488899999999987653
No 99
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.80 E-value=1.6e-19 Score=186.81 Aligned_cols=81 Identities=22% Similarity=0.184 Sum_probs=52.3
Q ss_pred eEEEcccCCCCCcChhhHhhcccCCeEeccCccccccCCCCCCCCCCccEEeCCCCcCCCcCcccccCCCCCCEEECcCC
Q 047190 754 KIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSRNHFFGGIPSSLSRLRLLSVMDLSYN 833 (1025)
Q Consensus 754 ~~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~Ldls~N 833 (1025)
+.|+|++|++++..+..+..+++|++|+|++|++++..+..++.+++|++|+|++|.+.+.. +.|+.|+++.|
T Consensus 103 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~-------~~l~~L~~~~n 175 (208)
T 2o6s_A 103 KELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTC-------PGIRYLSEWIN 175 (208)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCCT-------TTTHHHHHHHH
T ss_pred CEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecCC-------CCHHHHHHHHH
Confidence 44555555555555555566666677777777777666666677777777777777666543 35667777777
Q ss_pred cccccCCC
Q 047190 834 NFSGKIPK 841 (1025)
Q Consensus 834 ~l~g~ip~ 841 (1025)
+++|.+|.
T Consensus 176 ~~~g~ip~ 183 (208)
T 2o6s_A 176 KHSGVVRN 183 (208)
T ss_dssp HCTTTBBC
T ss_pred hCCceeec
Confidence 77777775
No 100
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.79 E-value=4.3e-19 Score=184.89 Aligned_cols=157 Identities=25% Similarity=0.252 Sum_probs=134.7
Q ss_pred cEEeCCCCcCccccChhhhhcCCCCcEEEeecCcCcccCc-ccccccCcccEEEccccccccccCccccCcccccccccc
Q 047190 634 TLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIP-FQLCYLSHIQILDLSLNNISGIIPKCFHNFTAMTKEKSS 712 (1025)
Q Consensus 634 ~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~ 712 (1025)
+.+++++|.++ .+|..+. +.+++|+|++|++++..| ..+..+++|+.|+|++|++++..|..|..+++|
T Consensus 14 ~~l~~s~n~l~-~iP~~~~---~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L------ 83 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHIP---QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGV------ 83 (220)
T ss_dssp TEEECCSSCCS-SCCSCCC---TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTC------
T ss_pred CEeEeCCCCcc-cCccCCC---CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCC------
Confidence 46778888877 6776543 456788888888887754 457888888888888888887777777776666
Q ss_pred CcccccccccccccccccceeEeecccCCccceeeccccceeEEEcccCCCCCcChhhHhhcccCCeEeccCccccccCC
Q 047190 713 NLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQIT 792 (1025)
Q Consensus 713 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip 792 (1025)
+.|+|++|++++..|..|..+++|++|+|++|+|++.+|
T Consensus 84 -----------------------------------------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 122 (220)
T 2v70_A 84 -----------------------------------------NEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGN 122 (220)
T ss_dssp -----------------------------------------CEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCT
T ss_pred -----------------------------------------CEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECH
Confidence 788999999998888889999999999999999999999
Q ss_pred CCCCCCCCccEEeCCCCcCCCcCcccccCCCCCCEEECcCCcccccCCC
Q 047190 793 PRIGQLKSLDFLDLSRNHFFGGIPSSLSRLRLLSVMDLSYNNFSGKIPK 841 (1025)
Q Consensus 793 ~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~Ldls~N~l~g~ip~ 841 (1025)
..|+.+++|++|||++|++++..|..+..+++|+.|++++|+++|.++.
T Consensus 123 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l 171 (220)
T 2v70_A 123 DSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYL 171 (220)
T ss_dssp TSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGGG
T ss_pred hHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCch
Confidence 9999999999999999999999999999999999999999999988663
No 101
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.78 E-value=1.4e-18 Score=195.27 Aligned_cols=244 Identities=18% Similarity=0.114 Sum_probs=180.0
Q ss_pred cEEEccCccccccCCCcccCCCCCCEEEcCCCcccccCCcccccccCCCEEEcccCcccccCC-ccccCCCCccE-EeCC
Q 047190 562 TYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLP-SFFMNGSQLTL-MDLG 639 (1025)
Q Consensus 562 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~-L~Ls 639 (1025)
++++.++++++ .+|..+ .+++++|+|++|+|+...+..|.++++|++|+|++|++.+.+| ..|.++++|.. +.++
T Consensus 12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 56888888888 667665 3689999999999997767788999999999999999876555 57888888765 6667
Q ss_pred CCcCccccChhhhhcCCCCcEEEeecCcCcccCcccccccCcccEEEccc-cccccccCccccCccccccccccCccccc
Q 047190 640 KNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSL-NNISGIIPKCFHNFTAMTKEKSSNLSIIS 718 (1025)
Q Consensus 640 ~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~l~~~~~~~~~~~~ 718 (1025)
.|+++ .+|...+..+++|++|++++|++.+..+..+....++..+++.+ |++....+..|..+..
T Consensus 89 ~N~l~-~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~------------- 154 (350)
T 4ay9_X 89 ANNLL-YINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSF------------- 154 (350)
T ss_dssp ETTCC-EECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBS-------------
T ss_pred CCccc-ccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcch-------------
Confidence 78898 55544444799999999999999877777777778888888866 4555444444443322
Q ss_pred ccccccccccccceeEeecccCCccceeeccccceeEEEcccCCCCCcChhhHhhcccCCeEeccC-ccccccCCCCCCC
Q 047190 719 NYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSN-NNLTGQITPRIGQ 797 (1025)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls~-N~l~g~ip~~~~~ 797 (1025)
.++.|+|++|+++. +|.......+|+.|++++ |.++...+..|++
T Consensus 155 ---------------------------------~l~~L~L~~N~i~~-i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~ 200 (350)
T 4ay9_X 155 ---------------------------------ESVILWLNKNGIQE-IHNSAFNGTQLDELNLSDNNNLEELPNDVFHG 200 (350)
T ss_dssp ---------------------------------SCEEEECCSSCCCE-ECTTSSTTEEEEEEECTTCTTCCCCCTTTTTT
T ss_pred ---------------------------------hhhhhccccccccC-CChhhccccchhHHhhccCCcccCCCHHHhcc
Confidence 23789999999986 444555667899999986 5666555567899
Q ss_pred CCCccEEeCCCCcCCCcCcccccCCCCCCEEECcCCcccccCCCCCCCCCcCCCCcCCCCCCC
Q 047190 798 LKSLDFLDLSRNHFFGGIPSSLSRLRLLSVMDLSYNNFSGKIPKGTQLQRFGASTYAGNPELC 860 (1025)
Q Consensus 798 l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~Ldls~N~l~g~ip~~~~~~~~~~~~~~gN~~lc 860 (1025)
+++|++||||+|+|+...+.. +..|+.|.+.+++--..+|....+..+.... .+|++.|
T Consensus 201 l~~L~~LdLs~N~l~~lp~~~---~~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~-l~~~~~c 259 (350)
T 4ay9_X 201 ASGPVILDISRTRIHSLPSYG---LENLKKLRARSTYNLKKLPTLEKLVALMEAS-LTYPSHC 259 (350)
T ss_dssp EECCSEEECTTSCCCCCCSSS---CTTCCEEECTTCTTCCCCCCTTTCCSCCEEE-CSCHHHH
T ss_pred CcccchhhcCCCCcCccChhh---hccchHhhhccCCCcCcCCCchhCcChhhCc-CCCCccc
Confidence 999999999999999765544 4566677776666566778655555554322 3455655
No 102
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.77 E-value=1.6e-18 Score=180.51 Aligned_cols=155 Identities=25% Similarity=0.316 Sum_probs=130.5
Q ss_pred cEEeCCCCcCccccChhhhhcCCCCcEEEeecCcCcccCcccccccCcccEEEccccccccccCccccCccccccccccC
Q 047190 634 TLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPKCFHNFTAMTKEKSSN 713 (1025)
Q Consensus 634 ~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~ 713 (1025)
+.++++++.++ .+|..+ .++|++|+|++|++++..+..+..+++|+.|+|++|++++..|..|..+++|
T Consensus 14 ~~v~c~~~~l~-~iP~~l---~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L------- 82 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNL---PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSL------- 82 (220)
T ss_dssp TEEECTTSCCS-SCCSSC---CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSC-------
T ss_pred CEEEcCCCCcC-cCCCcc---CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCC-------
Confidence 46777777777 677654 3578888888888887777778888888888888888887778777776666
Q ss_pred cccccccccccccccccceeEeecccCCccceeeccccceeEEEcccCCCCCcChhhHhhcccCCeEeccCccccccCCC
Q 047190 714 LSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITP 793 (1025)
Q Consensus 714 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~ 793 (1025)
+.|+|++|++++..+..|..+++|++|+|++|+|++..|.
T Consensus 83 ----------------------------------------~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~ 122 (220)
T 2v9t_B 83 ----------------------------------------NSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVD 122 (220)
T ss_dssp ----------------------------------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred ----------------------------------------CEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHH
Confidence 7788888888877777788899999999999999999999
Q ss_pred CCCCCCCccEEeCCCCcCCCcCcccccCCCCCCEEECcCCcccccC
Q 047190 794 RIGQLKSLDFLDLSRNHFFGGIPSSLSRLRLLSVMDLSYNNFSGKI 839 (1025)
Q Consensus 794 ~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~Ldls~N~l~g~i 839 (1025)
.|+.+++|++|||++|++++..+..+..+++|+.|++++|++.+..
T Consensus 123 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c 168 (220)
T 2v9t_B 123 AFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDC 168 (220)
T ss_dssp TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSG
T ss_pred HcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCC
Confidence 9999999999999999999998888999999999999999998754
No 103
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.75 E-value=5.1e-18 Score=178.03 Aligned_cols=156 Identities=24% Similarity=0.241 Sum_probs=129.5
Q ss_pred ccEEeCCCCcCccccChhhhhcCCCCcEEEeecCcCcccCcccccccCcccEEEccccccccccCccccCcccccccccc
Q 047190 633 LTLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPKCFHNFTAMTKEKSS 712 (1025)
Q Consensus 633 L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~ 712 (1025)
.+.++.++++++ .+|..+ .++|++|+|++|++++..|..+..+++|++|+|++|++++..+..|..++.|
T Consensus 21 ~~~v~c~~~~l~-~ip~~~---~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L------ 90 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGI---PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQL------ 90 (229)
T ss_dssp TTEEECTTSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC------
T ss_pred CCEeEccCCCcC-ccCCCC---CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCc------
Confidence 456777777776 777654 3678888888888888778888888888888888888876655666666555
Q ss_pred CcccccccccccccccccceeEeecccCCccceeeccccceeEEEcccCCCCCcChhhHhhcccCCeEeccCccccccCC
Q 047190 713 NLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQIT 792 (1025)
Q Consensus 713 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip 792 (1025)
+.|||++|++++..+..+..+++|++|+|++|+|+ .+|
T Consensus 91 -----------------------------------------~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp 128 (229)
T 3e6j_A 91 -----------------------------------------TVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELP 128 (229)
T ss_dssp -----------------------------------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCC
T ss_pred -----------------------------------------CEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccC
Confidence 77888888888877778888999999999999999 788
Q ss_pred CCCCCCCCccEEeCCCCcCCCcCcccccCCCCCCEEECcCCcccccCC
Q 047190 793 PRIGQLKSLDFLDLSRNHFFGGIPSSLSRLRLLSVMDLSYNNFSGKIP 840 (1025)
Q Consensus 793 ~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~Ldls~N~l~g~ip 840 (1025)
..++.+++|+.|||++|++++..+..+..+++|+.|++++|++.|..+
T Consensus 129 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 129 RGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp TTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred cccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence 889999999999999999998888889999999999999999998765
No 104
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.75 E-value=6e-18 Score=176.21 Aligned_cols=137 Identities=22% Similarity=0.208 Sum_probs=99.8
Q ss_pred ccEEeCCCCcCccccChhhhhcCCCCcEEEeecCcCcccCcccccccCcccEEEccccccccccCccccCcccccccccc
Q 047190 633 LTLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPKCFHNFTAMTKEKSS 712 (1025)
Q Consensus 633 L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~ 712 (1025)
+++|+|++|++++..|...+..+++|++|+|++|++++..+..+..+++|++|+|++|++++..|..|..+++|
T Consensus 34 ~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L------ 107 (220)
T 2v70_A 34 TAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESL------ 107 (220)
T ss_dssp CSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSC------
T ss_pred CCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCC------
Confidence 45566666666544343333356666666666666666666666677777777777777776666666655555
Q ss_pred CcccccccccccccccccceeEeecccCCccceeeccccceeEEEcccCCCCCcChhhHhhcccCCeEeccCccccccCC
Q 047190 713 NLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQIT 792 (1025)
Q Consensus 713 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip 792 (1025)
+.|+|++|++++..|..|..+++|+.|+|++|+|++.+|
T Consensus 108 -----------------------------------------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 146 (220)
T 2v70_A 108 -----------------------------------------KTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAP 146 (220)
T ss_dssp -----------------------------------------CEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCT
T ss_pred -----------------------------------------CEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECH
Confidence 667777777777777778888889999999999999889
Q ss_pred CCCCCCCCccEEeCCCCcCCCcCc
Q 047190 793 PRIGQLKSLDFLDLSRNHFFGGIP 816 (1025)
Q Consensus 793 ~~~~~l~~L~~LdLs~N~l~g~ip 816 (1025)
..|+.+++|+.|+|++|.+++..+
T Consensus 147 ~~~~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 147 GAFDTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp TTTTTCTTCCEEECCSCCEECSGG
T ss_pred HHhcCCCCCCEEEecCcCCcCCCc
Confidence 999999999999999999987654
No 105
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.74 E-value=9.2e-18 Score=182.98 Aligned_cols=189 Identities=22% Similarity=0.278 Sum_probs=109.5
Q ss_pred ccEEEccCccccccCCCcccCCCCCCEEEcCCCcccccCCcccccccCCCEEEcccCcccccCCccccCCCCccEEeCCC
Q 047190 561 LTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGK 640 (1025)
Q Consensus 561 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~ 640 (1025)
+..+.+..+.+++..+ +..+++|+.|++++|.+... + .+..+++|++|++++|++++..+ +..+++|+.|++++
T Consensus 26 ~~~~~l~~~~~~~~~~--~~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~ 99 (291)
T 1h6t_A 26 TIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDE 99 (291)
T ss_dssp HHHHHTTCSCTTSEEC--HHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCS
T ss_pred HHHHHhcCCCcccccc--hhhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCC
Confidence 3344555555553322 33456666666666666533 2 35555666666666666654333 55555555555555
Q ss_pred CcCccccChhhhhcCCCCcEEEeecCcCcccCcccccccCcccEEEccccccccccCccccCccccccccccCccccccc
Q 047190 641 NGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPKCFHNFTAMTKEKSSNLSIISNY 720 (1025)
Q Consensus 641 N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~ 720 (1025)
|+++ .+|. +. .+++|++|++++|++++. ..+..+++|
T Consensus 100 n~l~-~~~~-l~-~l~~L~~L~L~~n~i~~~--~~l~~l~~L-------------------------------------- 136 (291)
T 1h6t_A 100 NKVK-DLSS-LK-DLKKLKSLSLEHNGISDI--NGLVHLPQL-------------------------------------- 136 (291)
T ss_dssp SCCC-CGGG-GT-TCTTCCEEECTTSCCCCC--GGGGGCTTC--------------------------------------
T ss_pred CcCC-CChh-hc-cCCCCCEEECCCCcCCCC--hhhcCCCCC--------------------------------------
Confidence 5555 2332 22 345555555555554432 234444444
Q ss_pred ccccccccccceeEeecccCCccceeeccccceeEEEcccCCCCCcChhhHhhcccCCeEeccCccccccCCCCCCCCCC
Q 047190 721 YYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPRIGQLKS 800 (1025)
Q Consensus 721 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~ 800 (1025)
+.|++++|++++. ..+..+++|+.|+|++|++++..| ++.+++
T Consensus 137 ---------------------------------~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~ 179 (291)
T 1h6t_A 137 ---------------------------------ESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTK 179 (291)
T ss_dssp ---------------------------------CEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTT
T ss_pred ---------------------------------CEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCc
Confidence 4555555555543 355666777777777777776655 777777
Q ss_pred ccEEeCCCCcCCCcCcccccCCCCCCEEECcCCcccc
Q 047190 801 LDFLDLSRNHFFGGIPSSLSRLRLLSVMDLSYNNFSG 837 (1025)
Q Consensus 801 L~~LdLs~N~l~g~ip~~l~~l~~L~~Ldls~N~l~g 837 (1025)
|+.|+|++|++++. | .+..+++|+.|++++|++++
T Consensus 180 L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 180 LQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp CCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEEC
T ss_pred cCEEECCCCcCCCC-h-hhccCCCCCEEECcCCcccC
Confidence 77777777777763 3 37777778888888887765
No 106
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.74 E-value=2.1e-18 Score=188.08 Aligned_cols=148 Identities=24% Similarity=0.266 Sum_probs=119.1
Q ss_pred CceeeccCCcccccccccccccCCcccEEEccCccccccCCCcccCCCCCCEEEcCCCcccccCCcccccccCCCEEEcc
Q 047190 536 VSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLY 615 (1025)
Q Consensus 536 L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~ 615 (1025)
+..+.+..+.+.+.... ..++.|+.|++++|.++.. + .+..+++|++|++++|.+++..+ +..+++|++|+++
T Consensus 26 ~~~~~l~~~~~~~~~~~---~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~ 98 (291)
T 1h6t_A 26 TIKDNLKKKSVTDAVTQ---NELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLD 98 (291)
T ss_dssp HHHHHTTCSCTTSEECH---HHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECC
T ss_pred HHHHHhcCCCcccccch---hhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECC
Confidence 44455666666554332 2357899999999999854 4 48889999999999999997654 8999999999999
Q ss_pred cCcccccCCccccCCCCccEEeCCCCcCccccChhhhhcCCCCcEEEeecCcCcccCcccccccCcccEEEccccccccc
Q 047190 616 NNSLSGGLPSFFMNGSQLTLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGI 695 (1025)
Q Consensus 616 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 695 (1025)
+|++++. ..+..+++|+.|++++|++++ ++ .+. .+++|++|++++|++++. ..+..+++|+.|++++|++++.
T Consensus 99 ~n~l~~~--~~l~~l~~L~~L~L~~n~i~~-~~-~l~-~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~ 171 (291)
T 1h6t_A 99 ENKVKDL--SSLKDLKKLKSLSLEHNGISD-IN-GLV-HLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDI 171 (291)
T ss_dssp SSCCCCG--GGGTTCTTCCEEECTTSCCCC-CG-GGG-GCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCC
T ss_pred CCcCCCC--hhhccCCCCCEEECCCCcCCC-Ch-hhc-CCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccc
Confidence 9999863 349999999999999999984 54 455 699999999999999875 5778888888888888887754
Q ss_pred cC
Q 047190 696 IP 697 (1025)
Q Consensus 696 ~p 697 (1025)
.|
T Consensus 172 ~~ 173 (291)
T 1h6t_A 172 VP 173 (291)
T ss_dssp GG
T ss_pred hh
Confidence 33
No 107
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.74 E-value=3.2e-18 Score=204.55 Aligned_cols=192 Identities=22% Similarity=0.270 Sum_probs=130.6
Q ss_pred CCceeeccCCcccccccccccccCCcccEEEccCccccccCCCcccCCCCCCEEEcCCCcccccCCcccccccCCCEEEc
Q 047190 535 NVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSL 614 (1025)
Q Consensus 535 ~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 614 (1025)
.+..+.+..+.+.+..+. ..++.|+.|++++|.+.. ++ .+..+++|+.|+|++|.+++..| +..+++|+.|+|
T Consensus 22 ~l~~l~l~~~~i~~~~~~---~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~L 94 (605)
T 1m9s_A 22 ETIKDNLKKKSVTDAVTQ---NELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFL 94 (605)
T ss_dssp HHHHHHTTCSCTTSEECH---HHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEEC
T ss_pred HHHHHhccCCCcccccch---hcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEEC
Confidence 344555666655544332 234667778888887774 33 47777788888888887776544 777778888888
Q ss_pred ccCcccccCCccccCCCCccEEeCCCCcCccccChhhhhcCCCCcEEEeecCcCcccCcccccccCcccEEEcccccccc
Q 047190 615 YNNSLSGGLPSFFMNGSQLTLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISG 694 (1025)
Q Consensus 615 ~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 694 (1025)
++|.+++. | .+..+++|+.|+|++|+++ .+| .+. .+++|+.|+|++|++++. ..+..+++|+.|+|++|.+++
T Consensus 95 s~N~l~~l-~-~l~~l~~L~~L~Ls~N~l~-~l~-~l~-~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~ 167 (605)
T 1m9s_A 95 DENKIKDL-S-SLKDLKKLKSLSLEHNGIS-DIN-GLV-HLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISD 167 (605)
T ss_dssp CSSCCCCC-T-TSTTCTTCCEEECTTSCCC-CCG-GGG-GCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCC
T ss_pred cCCCCCCC-h-hhccCCCCCEEEecCCCCC-CCc-ccc-CCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCC
Confidence 88877752 2 5777777888888888777 343 344 577777777777777764 467777777777777777776
Q ss_pred ccCccccCccccccccccCcccccccccccccccccceeEeecccCCccceeeccccceeEEEcccCCCCCcChhhHhhc
Q 047190 695 IIPKCFHNFTAMTKEKSSNLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDL 774 (1025)
Q Consensus 695 ~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~~~ip~~~~~l 774 (1025)
..| +..+++| +.|+|++|++++. ..+..+
T Consensus 168 ~~~--l~~l~~L-----------------------------------------------~~L~Ls~N~i~~l--~~l~~l 196 (605)
T 1m9s_A 168 IVP--LAGLTKL-----------------------------------------------QNLYLSKNHISDL--RALAGL 196 (605)
T ss_dssp CGG--GTTCTTC-----------------------------------------------CEEECCSSCCCBC--GGGTTC
T ss_pred chh--hccCCCC-----------------------------------------------CEEECcCCCCCCC--hHHccC
Confidence 655 5444444 6677777777764 357777
Q ss_pred ccCCeEeccCccccccC
Q 047190 775 VGLVALNLSNNNLTGQI 791 (1025)
Q Consensus 775 ~~L~~L~Ls~N~l~g~i 791 (1025)
++|+.|+|++|.+++..
T Consensus 197 ~~L~~L~L~~N~l~~~p 213 (605)
T 1m9s_A 197 KNLDVLELFSQECLNKP 213 (605)
T ss_dssp TTCSEEECCSEEEECCC
T ss_pred CCCCEEEccCCcCcCCc
Confidence 77777777777777653
No 108
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.74 E-value=3.4e-18 Score=192.76 Aligned_cols=178 Identities=24% Similarity=0.222 Sum_probs=103.0
Q ss_pred CEEEcCCCcccccCCcccccccCCCEEEcccCcccccCCcccc-CCCCccEEeCCCCcCccccChhhhhcCCCCcEEEee
Q 047190 586 AILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFM-NGSQLTLMDLGKNGLSGEIPTWIGESLPNLVVLSLR 664 (1025)
Q Consensus 586 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~-~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~ 664 (1025)
+.+++++|.++. +|..+. ..++.|+|++|++++..+..|. ++++|+.|+|++|++++..|..+. .+++|++|+|+
T Consensus 21 ~~l~c~~~~l~~-iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~-~l~~L~~L~Ls 96 (361)
T 2xot_A 21 NILSCSKQQLPN-VPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFV-PVPNLRYLDLS 96 (361)
T ss_dssp TEEECCSSCCSS-CCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTT-TCTTCCEEECC
T ss_pred CEEEeCCCCcCc-cCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhcc-CCCCCCEEECC
Confidence 466666666663 444432 3455666666666655555554 555555555555555522222232 44555555555
Q ss_pred cCcCcccCcccccccCcccEEEccccccccccCccccCccccccccccCcccccccccccccccccceeEeecccCCccc
Q 047190 665 SNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPKCFHNFTAMTKEKSSNLSIISNYYYNLGLRGMLMPLIFFDTWKGGQY 744 (1025)
Q Consensus 665 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 744 (1025)
+|++++..+..|..+++|++
T Consensus 97 ~N~l~~~~~~~~~~l~~L~~------------------------------------------------------------ 116 (361)
T 2xot_A 97 SNHLHTLDEFLFSDLQALEV------------------------------------------------------------ 116 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCE------------------------------------------------------------
T ss_pred CCcCCcCCHHHhCCCcCCCE------------------------------------------------------------
Confidence 55554444444444444444
Q ss_pred eeeccccceeEEEcccCCCCCcChhhHhhcccCCeEeccCccccccCCCCC---CCCCCccEEeCCCCcCCCcCcccccC
Q 047190 745 EYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPRI---GQLKSLDFLDLSRNHFFGGIPSSLSR 821 (1025)
Q Consensus 745 ~~~~~~~~l~~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~---~~l~~L~~LdLs~N~l~g~ip~~l~~ 821 (1025)
|+|++|++++..|..|.++++|+.|+|++|+|++..+..| +.+++|+.|||++|+|++..+..+..
T Consensus 117 -----------L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~ 185 (361)
T 2xot_A 117 -----------LLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQK 185 (361)
T ss_dssp -----------EECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHH
T ss_pred -----------EECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhh
Confidence 4555555554455555566666666677776665444444 56778888888888888776677777
Q ss_pred CCC--CCEEECcCCccccc
Q 047190 822 LRL--LSVMDLSYNNFSGK 838 (1025)
Q Consensus 822 l~~--L~~Ldls~N~l~g~ 838 (1025)
++. |+.|++++|++.+.
T Consensus 186 l~~~~l~~l~l~~N~~~C~ 204 (361)
T 2xot_A 186 LPAWVKNGLYLHNNPLECD 204 (361)
T ss_dssp SCHHHHTTEECCSSCEECC
T ss_pred ccHhhcceEEecCCCccCC
Confidence 765 47788888888764
No 109
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.73 E-value=2.2e-17 Score=197.27 Aligned_cols=190 Identities=22% Similarity=0.296 Sum_probs=102.3
Q ss_pred ccEEEccCccccccCCCcccCCCCCCEEEcCCCcccccCCcccccccCCCEEEcccCcccccCCccccCCCCccEEeCCC
Q 047190 561 LTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGK 640 (1025)
Q Consensus 561 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~ 640 (1025)
+..+.+..+.+.+..+ +..+++|+.|++++|.+... + .+..+++|+.|+|++|++++..| +..+++|+.|+|++
T Consensus 23 l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~ 96 (605)
T 1m9s_A 23 TIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDE 96 (605)
T ss_dssp HHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCS
T ss_pred HHHHhccCCCcccccc--hhcCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcC
Confidence 3444455555543332 34455566666666655532 2 35555666666666666655433 55566666666666
Q ss_pred CcCccccChhhhhcCCCCcEEEeecCcCcccCcccccccCcccEEEccccccccccCccccCccccccccccCccccccc
Q 047190 641 NGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPKCFHNFTAMTKEKSSNLSIISNY 720 (1025)
Q Consensus 641 N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~ 720 (1025)
|+++ .+| .+. .+++|++|+|++|++.+. ..+..+++|+.|+|++|.+++. ..+..+++|
T Consensus 97 N~l~-~l~-~l~-~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L-------------- 155 (605)
T 1m9s_A 97 NKIK-DLS-SLK-DLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKL-------------- 155 (605)
T ss_dssp SCCC-CCT-TST-TCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTC--------------
T ss_pred CCCC-CCh-hhc-cCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCC--------------
Confidence 6665 333 333 456666666666665542 2455556666666666665543 233333332
Q ss_pred ccccccccccceeEeecccCCccceeeccccceeEEEcccCCCCCcChhhHhhcccCCeEeccCccccccCCCCCCCCCC
Q 047190 721 YYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPRIGQLKS 800 (1025)
Q Consensus 721 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~ 800 (1025)
+.|+|++|++++.+| +..++.|+.|+|++|+|++. +.++.+++
T Consensus 156 ---------------------------------~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~ 198 (605)
T 1m9s_A 156 ---------------------------------DTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKN 198 (605)
T ss_dssp ---------------------------------SEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTT
T ss_pred ---------------------------------CEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC--hHHccCCC
Confidence 556666666655544 55566666666666666553 23555666
Q ss_pred ccEEeCCCCcCCCc
Q 047190 801 LDFLDLSRNHFFGG 814 (1025)
Q Consensus 801 L~~LdLs~N~l~g~ 814 (1025)
|+.|+|++|++++.
T Consensus 199 L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 199 LDVLELFSQECLNK 212 (605)
T ss_dssp CSEEECCSEEEECC
T ss_pred CCEEEccCCcCcCC
Confidence 66666666665543
No 110
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.73 E-value=2e-20 Score=222.39 Aligned_cols=36 Identities=19% Similarity=0.026 Sum_probs=24.4
Q ss_pred CCcccEEEccCccccccCCCcccCCCCCCEEEcCCCc
Q 047190 558 SHLLTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNS 594 (1025)
Q Consensus 558 ~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~ 594 (1025)
++.|+.|+|++|.++ .+|..++++++|+.|++++|.
T Consensus 348 ~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~ 383 (567)
T 1dce_A 348 DEQLFRCELSVEKST-VLQSELESCKELQELEPENKW 383 (567)
T ss_dssp TTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHH
T ss_pred CccceeccCChhhHH-hhHHHHHHHHHHHHhccccch
Confidence 355677777777776 567777777777777776554
No 111
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.72 E-value=6.8e-20 Score=217.71 Aligned_cols=191 Identities=23% Similarity=0.230 Sum_probs=107.4
Q ss_pred cCCCCCcEEEccCCCCCCCCCcccccCccccccccccccc-------------CCCCcchhccCCCCCCEEe-cccCCCC
Q 047190 109 LKLQHLTYLDLSWNNFSGSPIPEFIGSLGKLSELALSSAQ-------------FAGPIPHQLGNLSKLQVLD-LRFNNLF 174 (1025)
Q Consensus 109 ~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~-------------l~~~~p~~l~~L~~L~~L~-Ls~n~i~ 174 (1025)
..+++|+.|+|++|.++ .+|+.++.|++|+.|++++|. +.+.+|..++++++|++|+ ++.|.+
T Consensus 346 ~~~~~L~~L~Ls~n~L~--~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~- 422 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST--VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL- 422 (567)
T ss_dssp STTTTSSSCCCCHHHHH--HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHH-
T ss_pred ccCccceeccCChhhHH--hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhccc-
Confidence 45667777777777765 367777777777777776553 3334444444444444444 333321
Q ss_pred CCCCchhcccCCCCCeeeccCCcCCCCcchHHhhCCCCCCCEEEcCCCCCCCCCCCcccccccCCcccEEEccCCCCCCC
Q 047190 175 SSGNLDWLSYLSSLRYLDLADCKLSKFSNWVQVLSNLRSLTNLYLGYCDLPPISTPSLLHINYSKSLEVIDLSNNYLTNS 254 (1025)
Q Consensus 175 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~ 254 (1025)
.+|+.+.+++|.++.++. ..|+.|++++|.+++
T Consensus 423 -----------~~L~~l~l~~n~i~~l~~-----------------------------------~~L~~L~Ls~n~l~~- 455 (567)
T 1dce_A 423 -----------DDLRSKFLLENSVLKMEY-----------------------------------ADVRVLHLAHKDLTV- 455 (567)
T ss_dssp -----------HHHHHHHHHHHHHHHHHH-----------------------------------TTCSEEECTTSCCSS-
T ss_pred -----------chhhhhhhhcccccccCc-----------------------------------cCceEEEecCCCCCC-
Confidence 122223333333222110 234555555555554
Q ss_pred CchhhhhcCCCCccEEEcCCCCCCCCchhhhhCCCCCcEEEccCCCCCCcchhhcCCCCccEEEeecCCCCCcc-hHHhh
Q 047190 255 IYPWLFNVSSNLVDHIDLGSNQLHGSIPLAFGHMASLRHLDLLSNQLREVPKFLGNMSSLKRLVFSYNELRGEL-SEFIQ 333 (1025)
Q Consensus 255 ~~~~l~~l~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~~-~~~~~ 333 (1025)
+|. +..+.. |+.|+|++|.++ .+|..++.+++|+.|+|++|.++++| .++.+++|++|+|++|.+++.. |..+.
T Consensus 456 lp~-~~~l~~--L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~ 530 (567)
T 1dce_A 456 LCH-LEQLLL--VTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNRLQQSAAIQPLV 530 (567)
T ss_dssp CCC-GGGGTT--CCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSCCCSSSTTGGGG
T ss_pred CcC-cccccc--CcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCCCCCCCCCcHHHh
Confidence 343 555555 666666666666 45666666666666666666666666 5666666666666666666655 66666
Q ss_pred hcCCCCCCCCCCcEEEccccccccccCC
Q 047190 334 NVSSGSTKNSSLEWLYLAFNEITGTIPD 361 (1025)
Q Consensus 334 ~l~~~~~~~~~L~~L~L~~n~l~~~~p~ 361 (1025)
.++ +|+.|+|++|.+++.+|.
T Consensus 531 ~l~-------~L~~L~L~~N~l~~~~~~ 551 (567)
T 1dce_A 531 SCP-------RLVLLNLQGNSLCQEEGI 551 (567)
T ss_dssp GCT-------TCCEEECTTSGGGGSSSC
T ss_pred cCC-------CCCEEEecCCcCCCCccH
Confidence 555 666666666666655443
No 112
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.71 E-value=3.7e-17 Score=184.29 Aligned_cols=176 Identities=26% Similarity=0.222 Sum_probs=148.8
Q ss_pred eecccCcCccCCCCCCCCCceeeccCCcccccccccccccCCcccEEEccCccccccCCCcccCCCCCCEEEcCCCcccc
Q 047190 518 IDVSSNQFDGPIPLLPPNVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFG 597 (1025)
Q Consensus 518 l~ls~n~l~g~~p~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 597 (1025)
++++++.++......+..++.|++++|++++..+......+++|+.|+|++|+|++..+..|.++++|++|+|++|++++
T Consensus 23 l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~ 102 (361)
T 2xot_A 23 LSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHT 102 (361)
T ss_dssp EECCSSCCSSCCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE
T ss_pred EEeCCCCcCccCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCc
Confidence 55555555543334566789999999999887665443256889999999999998888899999999999999999998
Q ss_pred cCCcccccccCCCEEEcccCcccccCCccccCCCCccEEeCCCCcCccccChhhh---hcCCCCcEEEeecCcCcccCcc
Q 047190 598 EIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGKNGLSGEIPTWIG---ESLPNLVVLSLRSNKFHGNIPF 674 (1025)
Q Consensus 598 ~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~---~~l~~L~~L~L~~N~l~~~~p~ 674 (1025)
..+..|..+++|++|+|++|++++..|..|.++++|+.|+|++|+++ .+|..++ ..+++|++|+|++|+|++..+.
T Consensus 103 ~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~ 181 (361)
T 2xot_A 103 LDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLT 181 (361)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-SCCGGGTC----CTTCCEEECCSSCCCCCCHH
T ss_pred CCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCC-eeCHHHhcCcccCCcCCEEECCCCCCCccCHH
Confidence 88888999999999999999999998999999999999999999999 6887765 3589999999999999987777
Q ss_pred cccccCc--ccEEEcccccccc
Q 047190 675 QLCYLSH--IQILDLSLNNISG 694 (1025)
Q Consensus 675 ~l~~l~~--L~~L~Ls~N~l~~ 694 (1025)
.+..++. ++.|+|++|++..
T Consensus 182 ~~~~l~~~~l~~l~l~~N~~~C 203 (361)
T 2xot_A 182 DLQKLPAWVKNGLYLHNNPLEC 203 (361)
T ss_dssp HHHHSCHHHHTTEECCSSCEEC
T ss_pred HhhhccHhhcceEEecCCCccC
Confidence 8888887 4899999999984
No 113
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.71 E-value=5.1e-18 Score=208.11 Aligned_cols=192 Identities=20% Similarity=0.236 Sum_probs=101.4
Q ss_pred CCCcccccCCcccccccCCCEEEcccCcccccCCccccCCCCccEEeCCCCcCccccChhhhhcCCCCcEEEeecCcCcc
Q 047190 591 ANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHG 670 (1025)
Q Consensus 591 s~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~ 670 (1025)
+.|.+. ..|..+..+..|+.|+|++|.+. .+|..+..+++|++|+|++|.|+ .+|..+. .+++|++|+|++|+|+
T Consensus 209 ~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~-~l~~L~~L~Ls~N~l~- 283 (727)
T 4b8c_D 209 IENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIK-NLSNLRVLDLSHNRLT- 283 (727)
T ss_dssp --------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGG-GGTTCCEEECTTSCCS-
T ss_pred ccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhh-CCCCCCEEeCcCCcCC-
Confidence 334443 44566666777777777777776 45555557777777777777777 7777665 5777777777777777
Q ss_pred cCcccccccCcccEEEccccccccccCccccCccccccccccCcccccccccccccccccceeEeecccCCccceeeccc
Q 047190 671 NIPFQLCYLSHIQILDLSLNNISGIIPKCFHNFTAMTKEKSSNLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSIL 750 (1025)
Q Consensus 671 ~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 750 (1025)
.+|..+..+++|++|+|++|.|+ .+|..|+.+++|
T Consensus 284 ~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L-------------------------------------------- 318 (727)
T 4b8c_D 284 SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNL-------------------------------------------- 318 (727)
T ss_dssp SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTC--------------------------------------------
T ss_pred ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCc--------------------------------------------
Confidence 56777777777777777777776 566666666655
Q ss_pred cceeEEEcccCCCCCcChhhHhhccc-CCeEeccCccccccCCCCCCCCCCccEEeCCCC--------cCCCcCcccccC
Q 047190 751 GLIKIIDLSSNKLGGKVLEEIMDLVG-LVALNLSNNNLTGQITPRIGQLKSLDFLDLSRN--------HFFGGIPSSLSR 821 (1025)
Q Consensus 751 ~~l~~LdLs~N~l~~~ip~~~~~l~~-L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N--------~l~g~ip~~l~~ 821 (1025)
+.|+|++|+|++.+|..+..+.. +..|+|++|.++|.+|. .|+.|++++| .|.+.++..+.+
T Consensus 319 ---~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~------~l~~l~l~~n~~~~~~~~~l~~~~~~~~~~ 389 (727)
T 4b8c_D 319 ---QFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH------ERRFIEINTDGEPQREYDSLQQSTEHLATD 389 (727)
T ss_dssp ---CCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC------C-----------------------------
T ss_pred ---cEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc------ccceeEeecccccccccCCccccccchhhc
Confidence 66777777777777777765432 23467888888877775 3455666666 455555566667
Q ss_pred CCCCCEEECcCCcccccCCC
Q 047190 822 LRLLSVMDLSYNNFSGKIPK 841 (1025)
Q Consensus 822 l~~L~~Ldls~N~l~g~ip~ 841 (1025)
+..+....+++|-+.+....
T Consensus 390 l~~~~~~~ls~Nil~~~~~~ 409 (727)
T 4b8c_D 390 LAKRTFTVLSYNTLCQHYAT 409 (727)
T ss_dssp ------------CCCGGGCC
T ss_pred ccccceeeeeccccccccCc
Confidence 77778888888888755443
No 114
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.70 E-value=6.5e-17 Score=168.37 Aligned_cols=141 Identities=23% Similarity=0.263 Sum_probs=92.1
Q ss_pred cEEEccCccccccCCCcccCCCCCCEEEcCCCcccccCCcccccccCCCEEEcccCcccccCCccccCCCCccEEeCCCC
Q 047190 562 TYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGKN 641 (1025)
Q Consensus 562 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N 641 (1025)
+.++++++.++ .+|..+. ++|+.|++++|.+++..+..|..+++|++|+|++|++++..|..|.++++|++|+|++|
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 45666666666 3454433 46667777777766666666666667777777777776666666777777777777777
Q ss_pred cCccccChhhhhcCCCCcEEEeecCcCcccCcccccccCcccEEEccccccccccCccccCcccc
Q 047190 642 GLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPKCFHNFTAM 706 (1025)
Q Consensus 642 ~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l 706 (1025)
+++ .+|..++..+++|++|+|++|++++..|..+..+++|++|+|++|++++..+..|..+++|
T Consensus 91 ~l~-~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 154 (220)
T 2v9t_B 91 KIT-ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAI 154 (220)
T ss_dssp CCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred cCC-ccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCC
Confidence 776 5555554456777777777777776666667777777777777777776655555555444
No 115
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.70 E-value=3.9e-18 Score=209.16 Aligned_cols=192 Identities=22% Similarity=0.232 Sum_probs=126.8
Q ss_pred EEccCccccccCCCcccCCCCCCEEEcCCCcccccCCcccccccCCCEEEcccCcccccCCccccCCCCccEEeCCCCcC
Q 047190 564 LDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGKNGL 643 (1025)
Q Consensus 564 L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l 643 (1025)
++++.|.+. ..++.+..++.|+.|+|++|.+. .+|..+..+++|++|+|++|.|+ .+|..|.++++|++|+|++|+|
T Consensus 206 ~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l 282 (727)
T 4b8c_D 206 DDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRL 282 (727)
T ss_dssp -----------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCC
T ss_pred cccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcC
Confidence 344444444 55788999999999999999998 67777889999999999999999 7889999999999999999999
Q ss_pred ccccChhhhhcCCCCcEEEeecCcCcccCcccccccCcccEEEccccccccccCccccCccccccccccCcccccccccc
Q 047190 644 SGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPKCFHNFTAMTKEKSSNLSIISNYYYN 723 (1025)
Q Consensus 644 ~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~ 723 (1025)
+ .+|..+. .+++|++|+|++|.|+ .+|..|..+++|++|+|++|+|++.+|..+..+....
T Consensus 283 ~-~lp~~~~-~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~---------------- 343 (727)
T 4b8c_D 283 T-SLPAELG-SCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTG---------------- 343 (727)
T ss_dssp S-SCCSSGG-GGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHH----------------
T ss_pred C-ccChhhc-CCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhh----------------
Confidence 9 8999987 7999999999999997 7788899999999999999999999998876543220
Q ss_pred cccccccceeEeecccCCccceeeccccceeEEEcccCCCCCcChhhHhhcccCCeEeccCc--------cccccCCCCC
Q 047190 724 LGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNN--------NLTGQITPRI 795 (1025)
Q Consensus 724 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls~N--------~l~g~ip~~~ 795 (1025)
..++|++|.++|.+|. .|+.|++++| .|.+.++..+
T Consensus 344 ------------------------------~~l~l~~N~l~~~~p~------~l~~l~l~~n~~~~~~~~~l~~~~~~~~ 387 (727)
T 4b8c_D 344 ------------------------------LIFYLRDNRPEIPLPH------ERRFIEINTDGEPQREYDSLQQSTEHLA 387 (727)
T ss_dssp ------------------------------HHHHHHHCCCCCCCCC------C---------------------------
T ss_pred ------------------------------hHHhhccCcccCcCcc------ccceeEeecccccccccCCccccccchh
Confidence 2367889999999886 4556677777 5666666667
Q ss_pred CCCCCccEEeCCCCcCCC
Q 047190 796 GQLKSLDFLDLSRNHFFG 813 (1025)
Q Consensus 796 ~~l~~L~~LdLs~N~l~g 813 (1025)
..+..++...+++|.+.+
T Consensus 388 ~~l~~~~~~~ls~Nil~~ 405 (727)
T 4b8c_D 388 TDLAKRTFTVLSYNTLCQ 405 (727)
T ss_dssp --------------CCCG
T ss_pred hcccccceeeeecccccc
Confidence 778888888999998864
No 116
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.70 E-value=5.6e-17 Score=165.90 Aligned_cols=154 Identities=16% Similarity=0.196 Sum_probs=92.7
Q ss_pred CCCCccEEeCCCCcCccccChhhhhcCCCCcEEEeecCcCcccCcccccccCcccEEEccccccccccCccccCcccccc
Q 047190 629 NGSQLTLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPKCFHNFTAMTK 708 (1025)
Q Consensus 629 ~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~ 708 (1025)
.+++|+.|++++|.++ .+| .+. .+++|++|++++|.++. +..+..+++|++|++++|++++..|..++.+++|
T Consensus 42 ~l~~L~~L~l~~n~i~-~l~-~l~-~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L-- 114 (197)
T 4ezg_A 42 QMNSLTYITLANINVT-DLT-GIE-YAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSL-- 114 (197)
T ss_dssp HHHTCCEEEEESSCCS-CCT-TGG-GCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTC--
T ss_pred hcCCccEEeccCCCcc-ChH-HHh-cCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCC--
Confidence 3344555555555554 444 233 35555555555554432 2345555666666666666665555555544444
Q ss_pred ccccCcccccccccccccccccceeEeecccCCccceeeccccceeEEEcccCCCCCcChhhHhhcccCCeEeccCcccc
Q 047190 709 EKSSNLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLT 788 (1025)
Q Consensus 709 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~ 788 (1025)
+.|+|++|++++..|..+..+++|++|+|++|++.
T Consensus 115 ---------------------------------------------~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i 149 (197)
T 4ezg_A 115 ---------------------------------------------TLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAI 149 (197)
T ss_dssp ---------------------------------------------CEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBC
T ss_pred ---------------------------------------------CEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCc
Confidence 56666666666666677777777777777777733
Q ss_pred ccCCCCCCCCCCccEEeCCCCcCCCcCcccccCCCCCCEEECcCCcccc
Q 047190 789 GQITPRIGQLKSLDFLDLSRNHFFGGIPSSLSRLRLLSVMDLSYNNFSG 837 (1025)
Q Consensus 789 g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~Ldls~N~l~g 837 (1025)
+.+| .++.+++|+.|++++|++++. + .+..+++|+.|++++|++.+
T Consensus 150 ~~~~-~l~~l~~L~~L~l~~n~i~~~-~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 150 TDIM-PLKTLPELKSLNIQFDGVHDY-R-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp CCCG-GGGGCSSCCEEECTTBCCCCC-T-TGGGCSSCCEEEECBC----
T ss_pred cccH-hhcCCCCCCEEECCCCCCcCh-H-HhccCCCCCEEEeeCcccCC
Confidence 3444 577778888888888888763 3 67778888888888887654
No 117
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.70 E-value=1.5e-17 Score=169.15 Aligned_cols=88 Identities=22% Similarity=0.257 Sum_probs=63.3
Q ss_pred eEEEcccCCCCCcChhhHhhcccCCeEeccCccccccCCCCCCCCCCccEEeCCCCcCCCcCcccccCCCCCCEEECcCC
Q 047190 754 KIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSRNHFFGGIPSSLSRLRLLSVMDLSYN 833 (1025)
Q Consensus 754 ~~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~Ldls~N 833 (1025)
+.|+|++|++++.+|..|.+++.|++|+|++|+|++..|..|+++++|++|||++|++++.+|..+..+++|++|++++|
T Consensus 57 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 136 (192)
T 1w8a_A 57 VKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136 (192)
T ss_dssp CEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTC
T ss_pred CEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCC
Confidence 44555555555555555666667777777777777777777777778888888888888777777777788888888888
Q ss_pred cccccCCC
Q 047190 834 NFSGKIPK 841 (1025)
Q Consensus 834 ~l~g~ip~ 841 (1025)
+++|.++.
T Consensus 137 ~l~c~c~l 144 (192)
T 1w8a_A 137 PFNCNCHL 144 (192)
T ss_dssp CBCCSGGG
T ss_pred CccCcCcc
Confidence 88777653
No 118
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.69 E-value=2e-16 Score=165.79 Aligned_cols=137 Identities=21% Similarity=0.108 Sum_probs=126.2
Q ss_pred CcccEEEccCccccccCCCcccCCCCCCEEEcCCCcccccCCcccccccCCCEEEcccCcccccCCccccCCCCccEEeC
Q 047190 559 HLLTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDL 638 (1025)
Q Consensus 559 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 638 (1025)
++|++|+|++|.+++..|..|..+++|++|+|++|++++..+..|..+++|++|+|++|++++..+..|..+++|++|+|
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L 119 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFM 119 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEec
Confidence 67899999999999988999999999999999999998777777899999999999999999888888999999999999
Q ss_pred CCCcCccccChhhhhcCCCCcEEEeecCcCcccCcccccccCcccEEEccccccccccC
Q 047190 639 GKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIP 697 (1025)
Q Consensus 639 s~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p 697 (1025)
++|+++ .+|..+. .+++|++|+|++|++++..+..+..+++|+.|+|++|++.+..+
T Consensus 120 s~N~l~-~lp~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 120 CCNKLT-ELPRGIE-RLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp CSSCCC-SCCTTGG-GCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred cCCccc-ccCcccc-cCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence 999999 8998887 79999999999999998888889999999999999999986544
No 119
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.68 E-value=2.7e-17 Score=176.37 Aligned_cols=169 Identities=20% Similarity=0.254 Sum_probs=99.0
Q ss_pred cCCCEEEcccCcccccCCccccCCCCccEEeCCCCcCccccChhhhhcCCCCcEEEeecCcCcccCcccccccCcccEEE
Q 047190 607 RSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILD 686 (1025)
Q Consensus 607 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ 686 (1025)
.++..+++++|.+++.. .+..+++|+.|++++|+++ .+| .+. .+++|++|+|++|++++..+ +..+++|+.|+
T Consensus 19 ~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~-~l~-~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~ 91 (263)
T 1xeu_A 19 ANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLA-GMQ-FFTNLKELHLSHNQISDLSP--LKDLTKLEELS 91 (263)
T ss_dssp HHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCT-TGG-GCTTCCEEECCSSCCCCCGG--GTTCSSCCEEE
T ss_pred HHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcc-cch-HHh-hCCCCCEEECCCCccCCChh--hccCCCCCEEE
Confidence 34444444455444322 3444555555555555554 444 233 45555555555555554333 55556666666
Q ss_pred ccccccccccCccccCccccccccccCcccccccccccccccccceeEeecccCCccceeeccccceeEEEcccCCCCCc
Q 047190 687 LSLNNISGIIPKCFHNFTAMTKEKSSNLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGK 766 (1025)
Q Consensus 687 Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~~~ 766 (1025)
|++|++++. |.... + .|+.|+|++|++++.
T Consensus 92 L~~N~l~~l-~~~~~--~-----------------------------------------------~L~~L~L~~N~l~~~ 121 (263)
T 1xeu_A 92 VNRNRLKNL-NGIPS--A-----------------------------------------------CLSRLFLDNNELRDT 121 (263)
T ss_dssp CCSSCCSCC-TTCCC--S-----------------------------------------------SCCEEECCSSCCSBS
T ss_pred CCCCccCCc-Ccccc--C-----------------------------------------------cccEEEccCCccCCC
Confidence 666665532 21100 1 225666666666653
Q ss_pred ChhhHhhcccCCeEeccCccccccCCCCCCCCCCccEEeCCCCcCCCcCcccccCCCCCCEEECcCCccccc
Q 047190 767 VLEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSRNHFFGGIPSSLSRLRLLSVMDLSYNNFSGK 838 (1025)
Q Consensus 767 ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~Ldls~N~l~g~ 838 (1025)
..+..+++|+.|+|++|++++. | .++.+++|+.|+|++|++++. ..+..+++|+.|++++|++++.
T Consensus 122 --~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 122 --DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp --GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred --hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 2466777777777777777764 2 577777777777777777766 5677777777788877777765
No 120
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.68 E-value=1e-16 Score=163.88 Aligned_cols=154 Identities=18% Similarity=0.188 Sum_probs=93.9
Q ss_pred cccCCCEEEcccCcccccCCccccCCCCccEEeCCCCcCccccChhhhhcCCCCcEEEeecCcCcccCcccccccCcccE
Q 047190 605 FLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQI 684 (1025)
Q Consensus 605 ~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~ 684 (1025)
.+++|++|++++|.++ .+| .+..+++|++|++++|.++ .+ ..+. .+++|++|++++|++++..|..+..+++|++
T Consensus 42 ~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~-~~-~~l~-~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 42 QMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT-NY-NPIS-GLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS-CC-GGGT-TCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC-cc-hhhh-cCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 3444555555555554 223 3555555555555555443 22 2333 4666666666666666656666666666777
Q ss_pred EEccccccccccCccccCccccccccccCcccccccccccccccccceeEeecccCCccceeeccccceeEEEcccCCCC
Q 047190 685 LDLSLNNISGIIPKCFHNFTAMTKEKSSNLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLG 764 (1025)
Q Consensus 685 L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~ 764 (1025)
|++++|++++..|..++.+++| +.|++++|++.
T Consensus 117 L~Ls~n~i~~~~~~~l~~l~~L-----------------------------------------------~~L~L~~n~~i 149 (197)
T 4ezg_A 117 LDISHSAHDDSILTKINTLPKV-----------------------------------------------NSIDLSYNGAI 149 (197)
T ss_dssp EECCSSBCBGGGHHHHTTCSSC-----------------------------------------------CEEECCSCTBC
T ss_pred EEecCCccCcHhHHHHhhCCCC-----------------------------------------------CEEEccCCCCc
Confidence 7777776666555555555444 66677777633
Q ss_pred CcChhhHhhcccCCeEeccCccccccCCCCCCCCCCccEEeCCCCcCCC
Q 047190 765 GKVLEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSRNHFFG 813 (1025)
Q Consensus 765 ~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g 813 (1025)
+.+| .+..+++|+.|++++|++++. + .+..+++|+.|++++|++.+
T Consensus 150 ~~~~-~l~~l~~L~~L~l~~n~i~~~-~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 150 TDIM-PLKTLPELKSLNIQFDGVHDY-R-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp CCCG-GGGGCSSCCEEECTTBCCCCC-T-TGGGCSSCCEEEECBC----
T ss_pred cccH-hhcCCCCCCEEECCCCCCcCh-H-HhccCCCCCEEEeeCcccCC
Confidence 3344 577788888888888888763 3 67888888888888888764
No 121
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.68 E-value=5.4e-17 Score=165.10 Aligned_cols=132 Identities=27% Similarity=0.335 Sum_probs=107.0
Q ss_pred cEEeCCCCcCccccChhhhhcCCCCcEEEeecCcCcccCcc-cccccCcccEEEccccccccccCccccCcccccccccc
Q 047190 634 TLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPF-QLCYLSHIQILDLSLNNISGIIPKCFHNFTAMTKEKSS 712 (1025)
Q Consensus 634 ~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~-~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~ 712 (1025)
+.+++++|+++ .+|..+. .+|++|++++|++++..+. .+..+++|++|+|++|++++..|..|+.++.|
T Consensus 11 ~~l~~s~~~l~-~ip~~~~---~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L------ 80 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIP---LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHI------ 80 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC---TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTC------
T ss_pred CEEEcCCCCcC-cCccCCC---CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccC------
Confidence 56777777775 6776553 3777888888887766654 47778888888888888887777777766665
Q ss_pred CcccccccccccccccccceeEeecccCCccceeeccccceeEEEcccCCCCCcChhhHhhcccCCeEeccCccccccCC
Q 047190 713 NLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQIT 792 (1025)
Q Consensus 713 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip 792 (1025)
+.|+|++|++++..|..|.++++|++|+|++|+|++.+|
T Consensus 81 -----------------------------------------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 119 (192)
T 1w8a_A 81 -----------------------------------------QELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMP 119 (192)
T ss_dssp -----------------------------------------CEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECT
T ss_pred -----------------------------------------CEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCH
Confidence 778888888888888888888999999999999999999
Q ss_pred CCCCCCCCccEEeCCCCcCCCcCc
Q 047190 793 PRIGQLKSLDFLDLSRNHFFGGIP 816 (1025)
Q Consensus 793 ~~~~~l~~L~~LdLs~N~l~g~ip 816 (1025)
..++.+++|++|+|++|.+++..+
T Consensus 120 ~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 120 GSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp TSSTTCTTCCEEECTTCCBCCSGG
T ss_pred HHhhcCCCCCEEEeCCCCccCcCc
Confidence 999999999999999999998765
No 122
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.66 E-value=2.9e-17 Score=176.07 Aligned_cols=123 Identities=19% Similarity=0.263 Sum_probs=70.9
Q ss_pred CcccEEEccCccccccCCCcccCCCCCCEEEcCCCcccccCCcccccccCCCEEEcccCcccccCCccccCCCCccEEeC
Q 047190 559 HLLTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDL 638 (1025)
Q Consensus 559 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 638 (1025)
..++.+++++|.+++.. .+..+++|++|++++|.++. ++ .+..+++|++|++++|++++..+ +..+++|+.|++
T Consensus 19 ~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L 92 (263)
T 1xeu_A 19 ANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEEC
T ss_pred HHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEEC
Confidence 44666677777766433 45666777777777777663 33 46666666666666666665433 666666666666
Q ss_pred CCCcCccccChhhhhcCCCCcEEEeecCcCcccCcccccccCcccEEEccccccc
Q 047190 639 GKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNIS 693 (1025)
Q Consensus 639 s~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 693 (1025)
++|+++ .+|... . ++|++|+|++|++++. + .+..+++|+.|+|++|+++
T Consensus 93 ~~N~l~-~l~~~~--~-~~L~~L~L~~N~l~~~-~-~l~~l~~L~~L~Ls~N~i~ 141 (263)
T 1xeu_A 93 NRNRLK-NLNGIP--S-ACLSRLFLDNNELRDT-D-SLIHLKNLEILSIRNNKLK 141 (263)
T ss_dssp CSSCCS-CCTTCC--C-SSCCEEECCSSCCSBS-G-GGTTCTTCCEEECTTSCCC
T ss_pred CCCccC-CcCccc--c-CcccEEEccCCccCCC-h-hhcCcccccEEECCCCcCC
Confidence 666665 344321 1 5555555555555542 1 3444555555555555444
No 123
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.58 E-value=3.3e-15 Score=148.45 Aligned_cols=134 Identities=22% Similarity=0.174 Sum_probs=98.0
Q ss_pred CCCCcEEEeecCcCc-ccCcccccccCcccEEEccccccccccCccccCccccccccccCccccccccccccccccccee
Q 047190 655 LPNLVVLSLRSNKFH-GNIPFQLCYLSHIQILDLSLNNISGIIPKCFHNFTAMTKEKSSNLSIISNYYYNLGLRGMLMPL 733 (1025)
Q Consensus 655 l~~L~~L~L~~N~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 733 (1025)
.++|++|++++|.++ +.+|..+..+++|+.|++++|.+++. ..++.++.|
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L--------------------------- 73 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKL--------------------------- 73 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSC---------------------------
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCC---------------------------
Confidence 456666777776666 55666666677777777777776654 444444443
Q ss_pred EeecccCCccceeeccccceeEEEcccCCCCCcChhhHhhcccCCeEeccCccccccC-CCCCCCCCCccEEeCCCCcCC
Q 047190 734 IFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQI-TPRIGQLKSLDFLDLSRNHFF 812 (1025)
Q Consensus 734 ~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~i-p~~~~~l~~L~~LdLs~N~l~ 812 (1025)
+.|+|++|++++.+|..+..+++|++|+|++|++++.. +..++.+++|++|++++|.++
T Consensus 74 --------------------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~ 133 (168)
T 2ell_A 74 --------------------KKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVT 133 (168)
T ss_dssp --------------------CEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGG
T ss_pred --------------------CEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCc
Confidence 67777777777777777777888888888888888753 267888888888888888888
Q ss_pred CcCc---ccccCCCCCCEEECcCCcccc
Q 047190 813 GGIP---SSLSRLRLLSVMDLSYNNFSG 837 (1025)
Q Consensus 813 g~ip---~~l~~l~~L~~Ldls~N~l~g 837 (1025)
+..+ ..+..+++|++||+++|.+..
T Consensus 134 ~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 161 (168)
T 2ell_A 134 NLNDYRESVFKLLPQLTYLDGYDREDQE 161 (168)
T ss_dssp TSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred chHHHHHHHHHhCccCcEecCCCCChhh
Confidence 7665 578888888888888887754
No 124
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.58 E-value=5e-15 Score=164.64 Aligned_cols=219 Identities=14% Similarity=0.099 Sum_probs=157.0
Q ss_pred CCcccEEEccCccccccCCCcccCCCCCCEEEcCCCcccccCCcccccccCCCEEEcccCc----ccccCCccccCCCCc
Q 047190 558 SHLLTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNS----LSGGLPSFFMNGSQL 633 (1025)
Q Consensus 558 ~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~----l~~~~p~~~~~l~~L 633 (1025)
+++|+.|+|.+ .++.+.+.+|.+|++|+.|++++|.+....+..|..+.++..+.+..+. ........|.++..|
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L 178 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPL 178 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCC
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccccc
Confidence 67788888888 7776667778888888888888888877777777777767666665532 222334456667777
Q ss_pred c-EEeCCCCcCccccChhhhhc---CCCCcEEEeecCcCcccCcccccccCcccEEEccccccccccCccccCccccccc
Q 047190 634 T-LMDLGKNGLSGEIPTWIGES---LPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPKCFHNFTAMTKE 709 (1025)
Q Consensus 634 ~-~L~Ls~N~l~g~ip~~~~~~---l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~ 709 (1025)
+ .+++... +.++..++.. ..++..+.+.++-.......-...+++|+.++|++|+++...+.+|.++++|
T Consensus 179 ~~~i~~~~~---~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L--- 252 (329)
T 3sb4_A 179 ETTIQVGAM---GKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYL--- 252 (329)
T ss_dssp EEEEEECTT---CCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTC---
T ss_pred ceeEEecCC---CcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCC---
Confidence 7 5555443 2444444322 4566777776653322111111237889999999988886666778777776
Q ss_pred cccCcccccccccccccccccceeEeecccCCccceeeccccceeEEEcccCCCCCcChhhHhhcccCC-eEeccCcccc
Q 047190 710 KSSNLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLV-ALNLSNNNLT 788 (1025)
Q Consensus 710 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~~~ip~~~~~l~~L~-~L~Ls~N~l~ 788 (1025)
+.|+|++| ++...+..|.++++|+ .+++.+ +++
T Consensus 253 --------------------------------------------~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~ 286 (329)
T 3sb4_A 253 --------------------------------------------LKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVT 286 (329)
T ss_dssp --------------------------------------------CEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCC
T ss_pred --------------------------------------------CEEECCcc-cceehHHHhhCChhccEEEEEcc-cce
Confidence 77888887 7777777888999998 999988 788
Q ss_pred ccCCCCCCCCCCccEEeCCCCcCCCcCcccccCCCCCCEEE
Q 047190 789 GQITPRIGQLKSLDFLDLSRNHFFGGIPSSLSRLRLLSVMD 829 (1025)
Q Consensus 789 g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~Ld 829 (1025)
...+.+|.++++|+.+++++|+++...+..|.++++|+.+.
T Consensus 287 ~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 287 AIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp EECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred EEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence 77788899999999999999999988888899898888875
No 125
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.58 E-value=8.3e-15 Score=148.82 Aligned_cols=87 Identities=25% Similarity=0.264 Sum_probs=67.6
Q ss_pred eEEEcccCCCCCcChhhHhhcccCCeEeccCccccccCCCCCCCCCCccEEeCCCCcCCCcCcccccCCCCCCEEECcCC
Q 047190 754 KIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSRNHFFGGIPSSLSRLRLLSVMDLSYN 833 (1025)
Q Consensus 754 ~~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~Ldls~N 833 (1025)
+.|||++|++++..+..|.+++.|++|+|++|+|++..|..|+.+++|+.|+|++|++++..+..+..+++|+.|++++|
T Consensus 57 ~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 136 (193)
T 2wfh_A 57 TLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN 136 (193)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSS
T ss_pred CEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCC
Confidence 44555555555555556666777888888888888888888888889999999999998777777888899999999999
Q ss_pred cccccCC
Q 047190 834 NFSGKIP 840 (1025)
Q Consensus 834 ~l~g~ip 840 (1025)
++.|..+
T Consensus 137 ~~~C~c~ 143 (193)
T 2wfh_A 137 PLYCDCN 143 (193)
T ss_dssp CEECSGG
T ss_pred CeecCCc
Confidence 9887543
No 126
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.57 E-value=1.4e-14 Score=161.05 Aligned_cols=264 Identities=16% Similarity=0.097 Sum_probs=133.0
Q ss_pred CCcEEEccccccccccCCCCCCCCCcEEEeecccccCcccccccc--------cCCcceeeccCcccccccchhhhcCCC
Q 047190 344 SLEWLYLAFNEITGTIPDLGGFPSLQILSLENNRLTGTISKSIGQ--------LSKLELLLLSGNSLRGVISEALFSNLS 415 (1025)
Q Consensus 344 ~L~~L~L~~n~l~~~~p~l~~l~~L~~L~L~~n~l~~~~p~~l~~--------l~~L~~L~L~~N~l~~~~~~~~~~~l~ 415 (1025)
+|+.|||++|++......-+.++.++.+.+..|.+ ....|.+ +++|+.|+|.+ .++ .++...|.+++
T Consensus 50 ~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I---~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~-~I~~~aF~~~~ 124 (329)
T 3sb4_A 50 SLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFV---PAYAFSNVVNGVTKGKQTLEKVILSE-KIK-NIEDAAFKGCD 124 (329)
T ss_dssp TCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEE---CTTTTEEEETTEEEECTTCCC-CBCT-TCC-EECTTTTTTCT
T ss_pred cCeEEecCcceeEEecCcccccccccccccccccc---CHHHhcccccccccccCCCcEEECCc-ccc-chhHHHhhcCc
Confidence 56666666666551111111222234444444422 2234444 77777777777 555 45555677777
Q ss_pred CCcEEECCCCccccccccCCCCCcccceeeccCCC----CCCCCchhhhcCCccc-EEEccCCCCCCchhhhhhhccccc
Q 047190 416 SLDTLQLSDNSLTLKFSHDWTPPFQLFNIFLGSCK----IGPRFPKWLQSQNQTV-ALDVSNAGISDIVPDWFWDLTNQL 490 (1025)
Q Consensus 416 ~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~~~----l~~~~p~~l~~~~~L~-~L~Ls~n~i~~~~~~~~~~~~~~L 490 (1025)
+|+.++++.|.+....+..|....++..+...... ........|.++..|+ .+++.... ..+..+....
T Consensus 125 ~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~---~l~~~~~~~~--- 198 (329)
T 3sb4_A 125 NLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMG---KLEDEIMKAG--- 198 (329)
T ss_dssp TCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTC---CHHHHHHHTT---
T ss_pred ccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCC---cHHHHHhhcc---
Confidence 77777777777766666666555555444433311 1111122233344443 33332211 1121111110
Q ss_pred eEEEccCccCCCCCCCccccccCCCCeeecccCcCccCCCCCCCCCceeeccCCcccccccccccccCCcccEEEccCcc
Q 047190 491 YYLNLSNNEMKGKLPDLSRKFDSYGPGIDVSSNQFDGPIPLLPPNVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNL 570 (1025)
Q Consensus 491 ~~L~Ls~N~l~~~~p~~~~~~l~~~~~l~ls~n~l~g~~p~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~N~ 570 (1025)
..+.+++.+.+.++-...... .....+++|+.+++++|+
T Consensus 199 ----------------------------------------~~~~~~~~l~~~~~l~~~~~~-~l~~~~~~L~~l~L~~n~ 237 (329)
T 3sb4_A 199 ----------------------------------------LQPRDINFLTIEGKLDNADFK-LIRDYMPNLVSLDISKTN 237 (329)
T ss_dssp ----------------------------------------CCGGGCSEEEEEECCCHHHHH-HHHHHCTTCCEEECTTBC
T ss_pred ----------------------------------------cCccccceEEEeeeecHHHHH-HHHHhcCCCeEEECCCCC
Confidence 001222333332221100000 000124567777777777
Q ss_pred ccccCCCcccCCCCCCEEEcCCCcccccCCcccccccCCC-EEEcccCcccccCCccccCCCCccEEeCCCCcCccccCh
Q 047190 571 LSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIG-SLSLYNNSLSGGLPSFFMNGSQLTLMDLGKNGLSGEIPT 649 (1025)
Q Consensus 571 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~-~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~ 649 (1025)
++.+.+.+|.++++|+.+++.+| ++...+.+|.++.+|+ .+++.+ .++.+.+.+|.+|++|+.+++++|+++ .|+.
T Consensus 238 i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~-~I~~ 314 (329)
T 3sb4_A 238 ATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKIT-TLGD 314 (329)
T ss_dssp CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCC-EECT
T ss_pred cceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccC-ccch
Confidence 77556666777777777777766 5555556666666666 666666 555555566666666666666666665 5555
Q ss_pred hhhhcCCCCcEEE
Q 047190 650 WIGESLPNLVVLS 662 (1025)
Q Consensus 650 ~~~~~l~~L~~L~ 662 (1025)
..|.++++|+.++
T Consensus 315 ~aF~~~~~L~~ly 327 (329)
T 3sb4_A 315 ELFGNGVPSKLIY 327 (329)
T ss_dssp TTTCTTCCCCEEE
T ss_pred hhhcCCcchhhhc
Confidence 5554566666554
No 127
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.57 E-value=3.2e-15 Score=145.25 Aligned_cols=129 Identities=19% Similarity=0.192 Sum_probs=95.9
Q ss_pred CCCCcEEEeecCcCc-ccCcccccccCcccEEEccccccccccCccccCccccccccccCccccccccccccccccccee
Q 047190 655 LPNLVVLSLRSNKFH-GNIPFQLCYLSHIQILDLSLNNISGIIPKCFHNFTAMTKEKSSNLSIISNYYYNLGLRGMLMPL 733 (1025)
Q Consensus 655 l~~L~~L~L~~N~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 733 (1025)
.++|++|++++|.++ +.+|..+..+++|+.|++++|.+++. ..++.++.|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L--------------------------- 66 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKL--------------------------- 66 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTC---------------------------
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCC---------------------------
Confidence 355666777777666 56666666777777777777777654 344444443
Q ss_pred EeecccCCccceeeccccceeEEEcccCCCCCcChhhHhhcccCCeEeccCcccccc-CCCCCCCCCCccEEeCCCCcCC
Q 047190 734 IFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQ-ITPRIGQLKSLDFLDLSRNHFF 812 (1025)
Q Consensus 734 ~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~-ip~~~~~l~~L~~LdLs~N~l~ 812 (1025)
+.|+|++|++++.+|..+..+++|++|++++|++++. .|..++.+++|++|++++|+++
T Consensus 67 --------------------~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~ 126 (149)
T 2je0_A 67 --------------------KKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVT 126 (149)
T ss_dssp --------------------CEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGG
T ss_pred --------------------CEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCccc
Confidence 7778888888877788888888888888888888874 4577888888899999999888
Q ss_pred CcCc---ccccCCCCCCEEECcC
Q 047190 813 GGIP---SSLSRLRLLSVMDLSY 832 (1025)
Q Consensus 813 g~ip---~~l~~l~~L~~Ldls~ 832 (1025)
+..+ ..+..+++|++||+++
T Consensus 127 ~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 127 NLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp GSTTHHHHHHHHCTTCCEETTBC
T ss_pred chHHHHHHHHHHCCCcccccCCC
Confidence 8766 5788888888888763
No 128
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.56 E-value=1.1e-14 Score=146.00 Aligned_cols=87 Identities=23% Similarity=0.201 Sum_probs=62.0
Q ss_pred eEEEcccCCCCCcChhhHhhcccCCeEeccCccccccCCCCCCCCCCccEEeCCCCcCCCcCcccccCCCCCCEEECcCC
Q 047190 754 KIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSRNHFFGGIPSSLSRLRLLSVMDLSYN 833 (1025)
Q Consensus 754 ~~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~Ldls~N 833 (1025)
+.|++++|++++..+..+..++.|++|+|++|++++.++..++.+++|++|||++|++++..+..+..+++|++|++++|
T Consensus 55 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 134 (177)
T 2o6r_A 55 TKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134 (177)
T ss_dssp SEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCC
Confidence 34444444444444444556667777777777777777777788888888888888888766666777888888888888
Q ss_pred cccccCC
Q 047190 834 NFSGKIP 840 (1025)
Q Consensus 834 ~l~g~ip 840 (1025)
++.|.+|
T Consensus 135 ~~~~~~~ 141 (177)
T 2o6r_A 135 PWDCSCP 141 (177)
T ss_dssp CBCCCHH
T ss_pred CeeccCc
Confidence 8887766
No 129
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.56 E-value=7e-15 Score=146.05 Aligned_cols=135 Identities=22% Similarity=0.212 Sum_probs=111.6
Q ss_pred CcccEEEccCcccc-ccCCCcccCCCCCCEEEcCCCcccccCCcccccccCCCEEEcccCcccccCCccccCCCCccEEe
Q 047190 559 HLLTYLDLSNNLLS-GRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMD 637 (1025)
Q Consensus 559 ~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ 637 (1025)
+.|+.|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|++++.+|..+..+++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 66888888888887 67788888888999999999988865 6788888999999999999887888888889999999
Q ss_pred CCCCcCccccC--hhhhhcCCCCcEEEeecCcCcccCc---ccccccCcccEEEccccccccccCc
Q 047190 638 LGKNGLSGEIP--TWIGESLPNLVVLSLRSNKFHGNIP---FQLCYLSHIQILDLSLNNISGIIPK 698 (1025)
Q Consensus 638 Ls~N~l~g~ip--~~~~~~l~~L~~L~L~~N~l~~~~p---~~l~~l~~L~~L~Ls~N~l~~~~p~ 698 (1025)
+++|+++ .+| ..+. .+++|++|++++|++++..+ ..+..+++|++|++++|.+. .+|.
T Consensus 102 Ls~N~l~-~~~~~~~l~-~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~ 164 (168)
T 2ell_A 102 LSGNKLK-DISTLEPLK-KLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ-EAPD 164 (168)
T ss_dssp CBSSSCC-SSGGGGGGS-SCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC-BCCS
T ss_pred ccCCccC-cchhHHHHh-cCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh-hccc
Confidence 9999988 444 4555 68899999999999987655 47888999999999999887 3443
No 130
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.54 E-value=2.3e-14 Score=145.62 Aligned_cols=129 Identities=26% Similarity=0.367 Sum_probs=103.4
Q ss_pred cEEeCCCCcCccccChhhhhcCCCCcEEEeecCcCcccCcccccccCcccEEEccccccccccCccccCccccccccccC
Q 047190 634 TLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPKCFHNFTAMTKEKSSN 713 (1025)
Q Consensus 634 ~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~ 713 (1025)
+.+++++|+++ .+|..+ .++|++|+|++|+++ .+|..+..+++|+.|+|++|.+++..|..|..++.|
T Consensus 13 ~~l~~~~~~l~-~ip~~~---~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L------- 80 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGI---PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQL------- 80 (193)
T ss_dssp TEEECTTSCCS-SCCSCC---CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTC-------
T ss_pred CEEEcCCCCCC-cCCCCC---CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCC-------
Confidence 46777777776 677654 356777888888776 566777788888888888888887777777766665
Q ss_pred cccccccccccccccccceeEeecccCCccceeeccccceeEEEcccCCCCCcChhhHhhcccCCeEeccCccccccCCC
Q 047190 714 LSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITP 793 (1025)
Q Consensus 714 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~ 793 (1025)
+.|||++|++++..|..|..+++|+.|+|++|+|++..+.
T Consensus 81 ----------------------------------------~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~ 120 (193)
T 2wfh_A 81 ----------------------------------------LTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEG 120 (193)
T ss_dssp ----------------------------------------CEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTT
T ss_pred ----------------------------------------CEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChh
Confidence 7788888888888888888899999999999999988888
Q ss_pred CCCCCCCccEEeCCCCcCCCc
Q 047190 794 RIGQLKSLDFLDLSRNHFFGG 814 (1025)
Q Consensus 794 ~~~~l~~L~~LdLs~N~l~g~ 814 (1025)
.|..+++|+.|+|++|.+...
T Consensus 121 ~~~~l~~L~~L~L~~N~~~C~ 141 (193)
T 2wfh_A 121 AFNDLSALSHLAIGANPLYCD 141 (193)
T ss_dssp TTTTCTTCCEEECCSSCEECS
T ss_pred hhhcCccccEEEeCCCCeecC
Confidence 899999999999999998753
No 131
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.54 E-value=2.3e-14 Score=143.65 Aligned_cols=133 Identities=27% Similarity=0.260 Sum_probs=106.8
Q ss_pred ccEEeCCCCcCccccChhhhhcCCCCcEEEeecCcCcccCcccccccCcccEEEccccccccccCccccCcccccccccc
Q 047190 633 LTLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPKCFHNFTAMTKEKSS 712 (1025)
Q Consensus 633 L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~ 712 (1025)
.+.+++++|+++ .+|..+ .++|++|++++|++++..+..+..+++|++|++++|++++..+..|+.++.|
T Consensus 9 ~~~l~~~~~~l~-~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L------ 78 (177)
T 2o6r_A 9 GTEIRCNSKGLT-SVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKL------ 78 (177)
T ss_dssp TTEEECCSSCCS-SCCTTC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTC------
T ss_pred CCEEEecCCCCc-cCCCCC---CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCcc------
Confidence 456777777776 666543 3578888888888877666677788888888888888886666666665555
Q ss_pred CcccccccccccccccccceeEeecccCCccceeeccccceeEEEcccCCCCCcChhhHhhcccCCeEeccCccccccCC
Q 047190 713 NLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQIT 792 (1025)
Q Consensus 713 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip 792 (1025)
+.|+|++|++++..+..+..+++|++|+|++|++++..+
T Consensus 79 -----------------------------------------~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 117 (177)
T 2o6r_A 79 -----------------------------------------TILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPD 117 (177)
T ss_dssp -----------------------------------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred -----------------------------------------CEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCH
Confidence 778888888888877788889999999999999998777
Q ss_pred CCCCCCCCccEEeCCCCcCCCcCc
Q 047190 793 PRIGQLKSLDFLDLSRNHFFGGIP 816 (1025)
Q Consensus 793 ~~~~~l~~L~~LdLs~N~l~g~ip 816 (1025)
..+..+++|++|+|++|.+++..|
T Consensus 118 ~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 118 GIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp TTTTTCTTCCEEECCSSCBCCCHH
T ss_pred HHhcCCcccCEEEecCCCeeccCc
Confidence 778999999999999999998766
No 132
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.54 E-value=1.3e-14 Score=140.90 Aligned_cols=128 Identities=23% Similarity=0.205 Sum_probs=108.9
Q ss_pred CcccEEEccCcccc-ccCCCcccCCCCCCEEEcCCCcccccCCcccccccCCCEEEcccCcccccCCccccCCCCccEEe
Q 047190 559 HLLTYLDLSNNLLS-GRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMD 637 (1025)
Q Consensus 559 ~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ 637 (1025)
++|+.|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 66899999999998 78888888999999999999999876 6788899999999999999987888888899999999
Q ss_pred CCCCcCccc-cChhhhhcCCCCcEEEeecCcCcccCc---ccccccCcccEEEccc
Q 047190 638 LGKNGLSGE-IPTWIGESLPNLVVLSLRSNKFHGNIP---FQLCYLSHIQILDLSL 689 (1025)
Q Consensus 638 Ls~N~l~g~-ip~~~~~~l~~L~~L~L~~N~l~~~~p---~~l~~l~~L~~L~Ls~ 689 (1025)
+++|++++. .|..+. .+++|++|++++|++++..+ ..+..+++|+.||+++
T Consensus 95 ls~N~i~~~~~~~~~~-~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLK-KLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp CTTSCCCSHHHHGGGG-GCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCCCcCCChHHHHHHh-hCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 999999852 235555 68999999999999987766 5788899999998864
No 133
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.50 E-value=6.6e-16 Score=158.06 Aligned_cols=152 Identities=24% Similarity=0.282 Sum_probs=96.9
Q ss_pred CCCccEEeCCCCcCccccCh------hhhhcCCCCcEEEeecCcCcccCcccccccCcccEEEccccccccccCccccCc
Q 047190 630 GSQLTLMDLGKNGLSGEIPT------WIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPKCFHNF 703 (1025)
Q Consensus 630 l~~L~~L~Ls~N~l~g~ip~------~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l 703 (1025)
...++.++++.+.++|.+|. .+. .+++|++|+|++|++++ +| .+..+++|+.|++++|.++ .+|..+..+
T Consensus 17 ~~~l~~l~l~~~~l~~~~~~l~~l~~~~~-~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~ 92 (198)
T 1ds9_A 17 RKSVVATEAEKVELHGMIPPIEKMDATLS-TLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVA 92 (198)
T ss_dssp TTCCCCTTCSEEECCBCCTTCCCCHHHHH-HTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHH
T ss_pred cccccCcchheeEeccccCcHhhhhHHHh-cCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcC
Confidence 34444445555555544443 554 46677777777776665 45 6666677777777777766 445444333
Q ss_pred cccccccccCcccccccccccccccccceeEeecccCCccceeeccccceeEEEcccCCCCCcChhhHhhcccCCeEecc
Q 047190 704 TAMTKEKSSNLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLS 783 (1025)
Q Consensus 704 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls 783 (1025)
+.| +.|+|++|++++ +| .+..+++|+.|+++
T Consensus 93 ~~L-----------------------------------------------~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~ 123 (198)
T 1ds9_A 93 DTL-----------------------------------------------EELWISYNQIAS-LS-GIEKLVNLRVLYMS 123 (198)
T ss_dssp HHC-----------------------------------------------SEEEEEEEECCC-HH-HHHHHHHSSEEEES
T ss_pred CcC-----------------------------------------------CEEECcCCcCCc-CC-ccccCCCCCEEECC
Confidence 333 667777777766 34 57777777777777
Q ss_pred CccccccCC-CCCCCCCCccEEeCCCCcCCCcCccc----------ccCCCCCCEEECcCCccc
Q 047190 784 NNNLTGQIT-PRIGQLKSLDFLDLSRNHFFGGIPSS----------LSRLRLLSVMDLSYNNFS 836 (1025)
Q Consensus 784 ~N~l~g~ip-~~~~~l~~L~~LdLs~N~l~g~ip~~----------l~~l~~L~~Ldls~N~l~ 836 (1025)
+|++++..+ ..++.+++|++|++++|.+++.+|.. +..+++|+.|| +|+++
T Consensus 124 ~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 124 NNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp EEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred CCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 777775433 45677777888888888877776653 67777888776 55554
No 134
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.46 E-value=2.8e-15 Score=153.35 Aligned_cols=151 Identities=21% Similarity=0.225 Sum_probs=100.8
Q ss_pred CCCEEEcccCcccccCCc------cccCCCCccEEeCCCCcCccccChhhhhcCCCCcEEEeecCcCcccCcccccccCc
Q 047190 608 SIGSLSLYNNSLSGGLPS------FFMNGSQLTLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSH 681 (1025)
Q Consensus 608 ~L~~L~L~~N~l~~~~p~------~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 681 (1025)
.++.++++.+.+++..|. .+..+++|++|++++|++++ +| .+. .+++|++|++++|+++ .+|..+..+++
T Consensus 19 ~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~-~l~~L~~L~l~~n~l~-~l~~~~~~~~~ 94 (198)
T 1ds9_A 19 SVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLS-GMENLRILSLGRNLIK-KIENLDAVADT 94 (198)
T ss_dssp CCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHH-HHTTCCEEEEEEEEEC-SCSSHHHHHHH
T ss_pred cccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccc-cCCCCCEEECCCCCcc-cccchhhcCCc
Confidence 334444444444444333 66667777777777777763 66 444 5777777777777776 45666666677
Q ss_pred ccEEEccccccccccCccccCccccccccccCcccccccccccccccccceeEeecccCCccceeeccccceeEEEcccC
Q 047190 682 IQILDLSLNNISGIIPKCFHNFTAMTKEKSSNLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSN 761 (1025)
Q Consensus 682 L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N 761 (1025)
|+.|++++|++++ +| .+..+++| +.|++++|
T Consensus 95 L~~L~L~~N~l~~-l~-~~~~l~~L-----------------------------------------------~~L~l~~N 125 (198)
T 1ds9_A 95 LEELWISYNQIAS-LS-GIEKLVNL-----------------------------------------------RVLYMSNN 125 (198)
T ss_dssp CSEEEEEEEECCC-HH-HHHHHHHS-----------------------------------------------SEEEESEE
T ss_pred CCEEECcCCcCCc-CC-ccccCCCC-----------------------------------------------CEEECCCC
Confidence 7777777777775 33 34444433 67777777
Q ss_pred CCCCcCh-hhHhhcccCCeEeccCccccccCCCC----------CCCCCCccEEeCCCCcCCC
Q 047190 762 KLGGKVL-EEIMDLVGLVALNLSNNNLTGQITPR----------IGQLKSLDFLDLSRNHFFG 813 (1025)
Q Consensus 762 ~l~~~ip-~~~~~l~~L~~L~Ls~N~l~g~ip~~----------~~~l~~L~~LdLs~N~l~g 813 (1025)
++++..+ ..+..+++|++|++++|.+++.+|.. +..+++|+.|| +|.++.
T Consensus 126 ~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~ 186 (198)
T 1ds9_A 126 KITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV 186 (198)
T ss_dssp ECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred cCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence 7776433 56788888888888888888887764 77888888887 676664
No 135
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.43 E-value=2.7e-13 Score=135.63 Aligned_cols=130 Identities=18% Similarity=0.198 Sum_probs=106.6
Q ss_pred CCcccEEEccCccccccCCCcccCC-CCCCEEEcCCCcccccCCcccccccCCCEEEcccCcccccCCccccCCCCccEE
Q 047190 558 SHLLTYLDLSNNLLSGRLPDCWFQF-DSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLM 636 (1025)
Q Consensus 558 ~~~L~~L~Ls~N~l~~~~p~~~~~l-~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L 636 (1025)
+++|+.|++++|.++. +|. +..+ ++|++|++++|.+++. ..+..+++|++|++++|++++..+..|..+++|++|
T Consensus 18 ~~~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 93 (176)
T 1a9n_A 18 AVRDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL 93 (176)
T ss_dssp TTSCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred cCCceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEE
Confidence 4678899999998884 454 4444 4899999999999875 678888999999999999997766667889999999
Q ss_pred eCCCCcCccccCh--hhhhcCCCCcEEEeecCcCcccCcc----cccccCcccEEEcccccccc
Q 047190 637 DLGKNGLSGEIPT--WIGESLPNLVVLSLRSNKFHGNIPF----QLCYLSHIQILDLSLNNISG 694 (1025)
Q Consensus 637 ~Ls~N~l~g~ip~--~~~~~l~~L~~L~L~~N~l~~~~p~----~l~~l~~L~~L~Ls~N~l~~ 694 (1025)
++++|+++ .+|. .+. .+++|++|++++|+++. +|. .+..+++|+.||+++|.+..
T Consensus 94 ~L~~N~i~-~~~~~~~l~-~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 94 ILTNNSLV-ELGDLDPLA-SLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp ECCSCCCC-CGGGGGGGG-GCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred ECCCCcCC-cchhhHhhh-cCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCCHHH
Confidence 99999996 6776 555 68999999999999984 455 38889999999999998763
No 136
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.42 E-value=4.3e-13 Score=133.14 Aligned_cols=88 Identities=22% Similarity=0.196 Sum_probs=81.5
Q ss_pred eEEEcccCCCCCcChhhHhhcccCCeEeccCccccccCCCCCCCCCCccEEeCCCCcCCCcCcccccCCCCCCEEECcCC
Q 047190 754 KIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSRNHFFGGIPSSLSRLRLLSVMDLSYN 833 (1025)
Q Consensus 754 ~~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~Ldls~N 833 (1025)
+.|+|++|++++..|..|..+++|++|+|++|+|++..|..|+.+++|++|+|++|+|++..|..+..+++|++|++++|
T Consensus 33 ~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 112 (170)
T 3g39_A 33 QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNN 112 (170)
T ss_dssp SEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCC
Confidence 78999999999998999999999999999999999888888999999999999999999988888999999999999999
Q ss_pred cccccCCC
Q 047190 834 NFSGKIPK 841 (1025)
Q Consensus 834 ~l~g~ip~ 841 (1025)
++.+..+.
T Consensus 113 ~~~c~c~~ 120 (170)
T 3g39_A 113 PWDCACSD 120 (170)
T ss_dssp CBCTTBGG
T ss_pred CCCCCchh
Confidence 99988663
No 137
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.42 E-value=4.4e-12 Score=143.86 Aligned_cols=219 Identities=11% Similarity=0.084 Sum_probs=158.5
Q ss_pred cccEEEccCccccccCCCcccCCCCCCEEEcCCCcccccCCcccccccCCCEEEcccCcccccCCccccCCCCccEEeCC
Q 047190 560 LLTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLG 639 (1025)
Q Consensus 560 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls 639 (1025)
+|+.+.+.+ .++.+.+.+|.+|++|+.+++.+|+++......|. ..+|+.+.+.++ +..+...+|.+|++|+.+++.
T Consensus 158 ~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~ 234 (401)
T 4fdw_A 158 TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIP 234 (401)
T ss_dssp CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECC
T ss_pred CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecC
Confidence 477777775 56656667888888888888888888866666666 578888888744 766777788888888888888
Q ss_pred CCcCccccChhhhhcCCCCcEEEeecCcCcccCcccccccCcccEEEccccccc-----cccCccccCccccccccccCc
Q 047190 640 KNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNIS-----GIIPKCFHNFTAMTKEKSSNL 714 (1025)
Q Consensus 640 ~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~-----~~~p~~~~~l~~l~~~~~~~~ 714 (1025)
+| ++ .|+...+.+ .+|+.+.+ .+.++...+..|.++++|+.+++.+|.+. ...+.+|.++++|
T Consensus 235 ~~-l~-~I~~~aF~~-~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L-------- 302 (401)
T 4fdw_A 235 EN-VS-TIGQEAFRE-SGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKL-------- 302 (401)
T ss_dssp TT-CC-EECTTTTTT-CCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTC--------
T ss_pred CC-cc-Ccccccccc-CCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccC--------
Confidence 75 55 677777644 78888888 55566666778888888888888887765 2334555555554
Q ss_pred ccccccccccccccccceeEeecccCCccceeeccccceeEEEcccCCCCCcChhhHhhcccCCeEeccCccccccCCCC
Q 047190 715 SIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPR 794 (1025)
Q Consensus 715 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~ 794 (1025)
+.++|. +.++..-...|.++++|+.++|..| ++..-+.+
T Consensus 303 ---------------------------------------~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~a 341 (401)
T 4fdw_A 303 ---------------------------------------ARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSA 341 (401)
T ss_dssp ---------------------------------------CEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTS
T ss_pred ---------------------------------------CeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHh
Confidence 556666 4466555667788888888888544 77666777
Q ss_pred CCCCCCccEEeCCCCcCCCcCcccccCC-CCCCEEECcCCcc
Q 047190 795 IGQLKSLDFLDLSRNHFFGGIPSSLSRL-RLLSVMDLSYNNF 835 (1025)
Q Consensus 795 ~~~l~~L~~LdLs~N~l~g~ip~~l~~l-~~L~~Ldls~N~l 835 (1025)
|.++ +|+.+++++|.+....+..|..+ ..++.+.+..|.+
T Consensus 342 F~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 342 FNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV 382 (401)
T ss_dssp SSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred CCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence 8888 88888888888777666677766 3677777666543
No 138
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.41 E-value=2.1e-13 Score=136.48 Aligned_cols=81 Identities=22% Similarity=0.258 Sum_probs=45.1
Q ss_pred eEEEcccCCCCCcChhhHhhcccCCeEeccCccccccCCC--CCCCCCCccEEeCCCCcCCCcCccc----ccCCCCCCE
Q 047190 754 KIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITP--RIGQLKSLDFLDLSRNHFFGGIPSS----LSRLRLLSV 827 (1025)
Q Consensus 754 ~~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~--~~~~l~~L~~LdLs~N~l~g~ip~~----l~~l~~L~~ 827 (1025)
+.|+|++|++++..+..+..+++|+.|+|++|+++ .+|. .++.+++|+.|++++|.++. +|.. +..++.|+.
T Consensus 67 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~ 144 (176)
T 1a9n_A 67 KTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRV 144 (176)
T ss_dssp CEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSE
T ss_pred CEEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccce
Confidence 33444444444333333455555666666666664 2333 56666666666666666663 3443 666677777
Q ss_pred EECcCCccc
Q 047190 828 MDLSYNNFS 836 (1025)
Q Consensus 828 Ldls~N~l~ 836 (1025)
||++.|...
T Consensus 145 Ld~~~n~~~ 153 (176)
T 1a9n_A 145 LDFQKVKLK 153 (176)
T ss_dssp ETTEECCHH
T ss_pred eCCCcCCHH
Confidence 777777654
No 139
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.37 E-value=1.3e-12 Score=130.07 Aligned_cols=87 Identities=24% Similarity=0.231 Sum_probs=77.6
Q ss_pred eEEEcccCCCCCcChhhHhhcccCCeEeccCccccccCCCCCCCCCCccEEeCCCCcCCCcCcccccCCCCCCEEECcCC
Q 047190 754 KIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSRNHFFGGIPSSLSRLRLLSVMDLSYN 833 (1025)
Q Consensus 754 ~~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~Ldls~N 833 (1025)
+.|+|++|++++.+|..|.++++|+.|+|++|+|++..+..|+.+++|++|||++|+|++..+..+..+++|++|++++|
T Consensus 36 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N 115 (174)
T 2r9u_A 36 QRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNN 115 (174)
T ss_dssp SEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSS
T ss_pred cEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCCC
Confidence 77888999998888888999999999999999999877777899999999999999999877777999999999999999
Q ss_pred cccccCC
Q 047190 834 NFSGKIP 840 (1025)
Q Consensus 834 ~l~g~ip 840 (1025)
++.+..+
T Consensus 116 ~~~c~~~ 122 (174)
T 2r9u_A 116 PWDCECR 122 (174)
T ss_dssp CBCTTBG
T ss_pred Ccccccc
Confidence 9987654
No 140
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.34 E-value=1.4e-11 Score=139.70 Aligned_cols=200 Identities=11% Similarity=0.106 Sum_probs=137.8
Q ss_pred cCCcccEEEccCccccccCCCcccCCCCCCEEEcCCCcccccCCcccccccCCCEEEcccCcccccCCccccCCCCccEE
Q 047190 557 SSHLLTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLM 636 (1025)
Q Consensus 557 ~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L 636 (1025)
.|++|+.+++++|.++.....+|. +.+|+.+.+.++ ++.....+|.++.+|+.+++.+| ++..-..+|.+ .+|+.+
T Consensus 178 ~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i 253 (401)
T 4fdw_A 178 YCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTV 253 (401)
T ss_dssp TCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEE
T ss_pred CcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEE
Confidence 456677777777777755555555 567777777643 65566667777777777777764 55555566666 677777
Q ss_pred eCCCCcCccccChhhhhcCCCCcEEEeecCcCc-----ccCcccccccCcccEEEccccccccccCccccCccccccccc
Q 047190 637 DLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFH-----GNIPFQLCYLSHIQILDLSLNNISGIIPKCFHNFTAMTKEKS 711 (1025)
Q Consensus 637 ~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~-----~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~ 711 (1025)
++ .+.++ .|+...+.++++|+.+++.+|.+. ...+..|.++++|+.++|. +.++..-..+|.++++|
T Consensus 254 ~l-p~~i~-~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L----- 325 (401)
T 4fdw_A 254 KL-PNGVT-NIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKV----- 325 (401)
T ss_dssp EE-ETTCC-EECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSC-----
T ss_pred Ee-CCCcc-EEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCc-----
Confidence 77 34455 566666667778888888777664 3455677788888888887 44665555666666665
Q ss_pred cCcccccccccccccccccceeEeecccCCccceeeccccceeEEEcccCCCCCcChhhHhhcccCCeEeccCccccccC
Q 047190 712 SNLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQI 791 (1025)
Q Consensus 712 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~i 791 (1025)
+.++|..| ++..-+..|.++ +|+.+++++|.+....
T Consensus 326 ------------------------------------------~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~ 361 (401)
T 4fdw_A 326 ------------------------------------------TQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVF 361 (401)
T ss_dssp ------------------------------------------CEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCC
T ss_pred ------------------------------------------cEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccc
Confidence 55666433 555556678888 8889999998888777
Q ss_pred CCCCCCCC-CccEEeCCCCcCC
Q 047190 792 TPRIGQLK-SLDFLDLSRNHFF 812 (1025)
Q Consensus 792 p~~~~~l~-~L~~LdLs~N~l~ 812 (1025)
+..|.+++ .++.|++..|.+.
T Consensus 362 ~~~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 362 EKVWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp CSSCCCSCTTCCEEEECGGGHH
T ss_pred cccccCCCCCccEEEeCHHHHH
Confidence 77788774 7888888877653
No 141
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.29 E-value=5.4e-11 Score=135.48 Aligned_cols=83 Identities=16% Similarity=0.061 Sum_probs=36.0
Q ss_pred cccCCCCCCEEEcCCCcccccCCcccccccCCCEEEcccCcccccCCccccCCCCccEEeCCCCcCccccChhhhhcCCC
Q 047190 578 CWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGKNGLSGEIPTWIGESLPN 657 (1025)
Q Consensus 578 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~ 657 (1025)
+|..+.+|+.+.+.++ ++..-..+|.++.+|+.+++.++ ++..-..+|.+|++|+.+++..+ ++ .|+...+.++++
T Consensus 292 ~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~C~~ 367 (394)
T 4fs7_A 292 TFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LR-KIGANAFQGCIN 367 (394)
T ss_dssp TTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTBTTCTT
T ss_pred cccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-cc-EehHHHhhCCCC
Confidence 3444444554444432 33233334444444444444322 33333344445555555555443 33 344443434444
Q ss_pred CcEEEee
Q 047190 658 LVVLSLR 664 (1025)
Q Consensus 658 L~~L~L~ 664 (1025)
|+.+++.
T Consensus 368 L~~i~lp 374 (394)
T 4fs7_A 368 LKKVELP 374 (394)
T ss_dssp CCEEEEE
T ss_pred CCEEEEC
Confidence 4444444
No 142
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.29 E-value=8.5e-12 Score=123.71 Aligned_cols=105 Identities=27% Similarity=0.260 Sum_probs=50.5
Q ss_pred ccEEEccCccccccCCCcccCCCCCCEEEcCCCcccccCCcccccccCCCEEEcccCcccccCCccccCCCCccEEeCCC
Q 047190 561 LTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGK 640 (1025)
Q Consensus 561 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~ 640 (1025)
.+.+++++|.++ .+|..+ .++|++|+|++|.+++..|..|..+++|++|+|++|++++..+..|..+++|++|+|++
T Consensus 11 ~~~l~~s~n~l~-~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLA-SVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcC-ccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 355666666665 344433 24555555555555555555555555555555555555544444444444444444444
Q ss_pred CcCccccChhhhhcCCCCcEEEeecCcCc
Q 047190 641 NGLSGEIPTWIGESLPNLVVLSLRSNKFH 669 (1025)
Q Consensus 641 N~l~g~ip~~~~~~l~~L~~L~L~~N~l~ 669 (1025)
|+++ .+|...+..+++|++|+|++|+++
T Consensus 88 N~l~-~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 88 NQLK-SIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp SCCC-CCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CccC-EeCHHHhcCCCCCCEEEeCCCCCC
Confidence 4444 222222223444444444444443
No 143
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.27 E-value=1.5e-13 Score=154.34 Aligned_cols=63 Identities=19% Similarity=0.067 Sum_probs=28.1
Q ss_pred CCccEEeCCCCcCccccChhhhhcCCCCcEEEeecCcCcccCccccc-----ccCcccEEEccccccc
Q 047190 631 SQLTLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLC-----YLSHIQILDLSLNNIS 693 (1025)
Q Consensus 631 ~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~-----~l~~L~~L~Ls~N~l~ 693 (1025)
++|+.|+|++|.+++.....+...+++|++|+|++|.++......++ ..++|+.|+|++|.++
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~ 168 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLT 168 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCC
Confidence 45555555555554332333333344455555555555433222221 2344555555555544
No 144
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.26 E-value=1.6e-11 Score=122.23 Aligned_cols=104 Identities=21% Similarity=0.165 Sum_probs=52.6
Q ss_pred cEEEccCccccccCCCcccCCCCCCEEEcCCCcccccCCcccccccCCCEEEcccCcccccCCccccCCCCccEEeCCCC
Q 047190 562 TYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGKN 641 (1025)
Q Consensus 562 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N 641 (1025)
+.+++++|.++ .+|..+. ++|++|+|++|++++..|..|..+++|++|+|++|+|++..+..|.+
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~------------ 79 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDK------------ 79 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT------------
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCC------------
Confidence 45566666554 3444332 45555555555555544444444444444444444444433333444
Q ss_pred cCccccChhhhhcCCCCcEEEeecCcCcccCcccccccCcccEEEccccccc
Q 047190 642 GLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNIS 693 (1025)
Q Consensus 642 ~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 693 (1025)
+++|++|+|++|+|++..+..+..+++|++|+|++|++.
T Consensus 80 -------------l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 80 -------------LTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp -------------CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred -------------cchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCcc
Confidence 555555555555555444444555555555555555555
No 145
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.20 E-value=3.9e-10 Score=128.34 Aligned_cols=141 Identities=12% Similarity=0.041 Sum_probs=110.1
Q ss_pred cCCcccEEEccCccccccCCCcccCCCCCCEEEcCCCcccccCCcccccccCCCEEEcccCcccccCCccccCCCCccEE
Q 047190 557 SSHLLTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLM 636 (1025)
Q Consensus 557 ~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L 636 (1025)
.+..|+.+.+..+... ....+|..+..++.+....+.+. ...|..+.+|+.+.+.++ ++.+-..+|.+|++|+.+
T Consensus 251 ~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i 325 (394)
T 4fs7_A 251 GCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSI 325 (394)
T ss_dssp TCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEE
T ss_pred ccccceeEEcCCCcce-eeccccccccccceeccCceeec---cccccccccccccccccc-cceechhhhcCCCCCCEE
Confidence 4577888888877554 66778888999999988776543 356788899999999765 666667889999999999
Q ss_pred eCCCCcCccccChhhhhcCCCCcEEEeecCcCcccCcccccccCcccEEEccccccccccCccccCccccc
Q 047190 637 DLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPKCFHNFTAMT 707 (1025)
Q Consensus 637 ~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~ 707 (1025)
+|.++ ++ .|+...+.++++|+.+.+..+ ++..-..+|.++++|+.+++..+ ++ .+..+|.++++|+
T Consensus 326 ~lp~~-v~-~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~ 391 (394)
T 4fs7_A 326 DLPYL-VE-EIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LE-QYRYDFEDTTKFK 391 (394)
T ss_dssp CCCTT-CC-EECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEEE
T ss_pred EeCCc-cc-EEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CE-EhhheecCCCCCc
Confidence 99765 66 787777778999999999877 77667788999999999999765 33 3456677777663
No 146
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.16 E-value=1.4e-12 Score=146.41 Aligned_cols=64 Identities=16% Similarity=0.108 Sum_probs=35.6
Q ss_pred CCccEEeCCCCcCccccChhhh----hcCCCCcEEEeecCcCccc----CcccccccCcccEEEcccccccc
Q 047190 631 SQLTLMDLGKNGLSGEIPTWIG----ESLPNLVVLSLRSNKFHGN----IPFQLCYLSHIQILDLSLNNISG 694 (1025)
Q Consensus 631 ~~L~~L~Ls~N~l~g~ip~~~~----~~l~~L~~L~L~~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~ 694 (1025)
++|+.|+|++|++++.....+. ...++|++|+|++|.++.. ++..+...++|++|+|++|.++.
T Consensus 126 ~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~ 197 (372)
T 3un9_A 126 LRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGD 197 (372)
T ss_dssp HTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHH
T ss_pred HhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCc
Confidence 4556666666666533222222 1245667777777766542 23344556677777777776653
No 147
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.15 E-value=5.4e-11 Score=133.12 Aligned_cols=85 Identities=19% Similarity=0.088 Sum_probs=61.1
Q ss_pred eEEEccc-CCCCCcChhhHhhcccCCeEeccCccccccCCCCCCCCCCccEEeCCCCcCCCcCcccccCCCCCCEEECcC
Q 047190 754 KIIDLSS-NKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSRNHFFGGIPSSLSRLRLLSVMDLSY 832 (1025)
Q Consensus 754 ~~LdLs~-N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~Ldls~ 832 (1025)
+.|+|++ |+|++..+..|+++++|+.|+|++|+|++.+|..|+++++|+.|||++|+|++..|..+..++ |+.|++++
T Consensus 34 ~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~ 112 (347)
T 2ifg_A 34 TELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSG 112 (347)
T ss_dssp SEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCS
T ss_pred eEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeC
Confidence 5667764 677666666777777777777777777777777777777777777777777766665665555 77777777
Q ss_pred CcccccC
Q 047190 833 NNFSGKI 839 (1025)
Q Consensus 833 N~l~g~i 839 (1025)
|++.+..
T Consensus 113 N~~~c~c 119 (347)
T 2ifg_A 113 NPLHCSC 119 (347)
T ss_dssp SCCCCCG
T ss_pred CCccCCC
Confidence 7776643
No 148
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.05 E-value=2.5e-10 Score=127.71 Aligned_cols=106 Identities=20% Similarity=0.186 Sum_probs=87.3
Q ss_pred cEEEccCc-cccccCCCcccCCCCCCEEEcCC-CcccccCCcccccccCCCEEEcccCcccccCCccccCCCCccEEeCC
Q 047190 562 TYLDLSNN-LLSGRLPDCWFQFDSLAILNLAN-NSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLG 639 (1025)
Q Consensus 562 ~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls 639 (1025)
..++++++ .++ .+|. +..+++|+.|+|++ |.+++..+..|..+++|+.|+|++|+|++..|..|.++++|+.|+|+
T Consensus 11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 35688887 787 4777 88888999999986 88988888888889999999999999998888888999999999999
Q ss_pred CCcCccccChhhhhcCCCCcEEEeecCcCccc
Q 047190 640 KNGLSGEIPTWIGESLPNLVVLSLRSNKFHGN 671 (1025)
Q Consensus 640 ~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~ 671 (1025)
+|+|+ .+|..++..++ |++|+|.+|++...
T Consensus 89 ~N~l~-~~~~~~~~~~~-L~~l~l~~N~~~c~ 118 (347)
T 2ifg_A 89 FNALE-SLSWKTVQGLS-LQELVLSGNPLHCS 118 (347)
T ss_dssp SSCCS-CCCSTTTCSCC-CCEEECCSSCCCCC
T ss_pred CCccc-eeCHHHcccCC-ceEEEeeCCCccCC
Confidence 99998 56666664444 88999999888743
No 149
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.93 E-value=5.6e-08 Score=110.44 Aligned_cols=82 Identities=16% Similarity=0.182 Sum_probs=45.8
Q ss_pred CCCCC-CCcEEEeecccccCcccccccccCCcceeeccCcc---cccccchhhhcCCCCCcEEECCCCccccccccCCCC
Q 047190 362 LGGFP-SLQILSLENNRLTGTISKSIGQLSKLELLLLSGNS---LRGVISEALFSNLSSLDTLQLSDNSLTLKFSHDWTP 437 (1025)
Q Consensus 362 l~~l~-~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~---l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 437 (1025)
|.++. .|+.+.+..+ ++.....+|.++++|+.+.+..|. ++ .+....|.++.+|+.+.+..+ ++......|..
T Consensus 59 F~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~-~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~ 135 (394)
T 4gt6_A 59 FCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVK-KIGRQAFMFCSELTDIPILDS-VTEIDSEAFHH 135 (394)
T ss_dssp TTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCC-EECTTTTTTCTTCCBCGGGTT-CSEECTTTTTT
T ss_pred ccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeee-EechhhchhcccceeeccCCc-cceehhhhhhh
Confidence 55553 4777777653 554555667777777777776653 33 344555777777766655443 33333333444
Q ss_pred Ccccceeec
Q 047190 438 PFQLFNIFL 446 (1025)
Q Consensus 438 ~~~L~~L~L 446 (1025)
..+|+.+.+
T Consensus 136 c~~L~~i~l 144 (394)
T 4gt6_A 136 CEELDTVTI 144 (394)
T ss_dssp CTTCCEEEC
T ss_pred hcccccccc
Confidence 444444444
No 150
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.92 E-value=1e-07 Score=108.34 Aligned_cols=127 Identities=13% Similarity=0.119 Sum_probs=58.6
Q ss_pred cCCcccEEEccCccccccCCCcccCCCCCCEEEcCCCcccccCCcccccccCCCEEEcccCcccccCCccccCCCCccEE
Q 047190 557 SSHLLTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLM 636 (1025)
Q Consensus 557 ~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L 636 (1025)
.+..|+.+.+.++..+ ....+|.++++|+.+.+. +.++.....+|.++.+|+.+.+..+ ++.+-..+|.+|++|+.+
T Consensus 263 ~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i 339 (394)
T 4gt6_A 263 SCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERI 339 (394)
T ss_dssp TCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEE
T ss_pred ecccccEEecccccce-ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEE
Confidence 3455555555444332 344455555566665554 3344344445555555555555433 443444455555555555
Q ss_pred eCCCCcCccccChhhhhcCCCCcEEEeecCcCcccCcccccccCcccEEEccccc
Q 047190 637 DLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNN 691 (1025)
Q Consensus 637 ~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 691 (1025)
.|..+ ++ .|....|.++++|+.+++.++.... ..+....+|+.+.+..|.
T Consensus 340 ~ip~s-v~-~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~ 389 (394)
T 4gt6_A 340 AIPSS-VT-KIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPGS 389 (394)
T ss_dssp EECTT-CC-BCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC---------
T ss_pred EECcc-cC-EEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCCC
Confidence 55433 33 4555544455555555555543321 234444555555544443
No 151
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.76 E-value=5.1e-09 Score=116.39 Aligned_cols=83 Identities=19% Similarity=0.310 Sum_probs=50.4
Q ss_pred ccceeEEEcccCCCCCcChhhHh---hcccCCeEeccCcccccc----CCCCCCCCCCccEEeCCCCcCCCcCcccccC-
Q 047190 750 LGLIKIIDLSSNKLGGKVLEEIM---DLVGLVALNLSNNNLTGQ----ITPRIGQLKSLDFLDLSRNHFFGGIPSSLSR- 821 (1025)
Q Consensus 750 ~~~l~~LdLs~N~l~~~ip~~~~---~l~~L~~L~Ls~N~l~g~----ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~- 821 (1025)
++.|+.|+|++|.+++..+..+. .++.|++|+|+.|.+++. ++..+..+++|+.|||++|.++...-..+..
T Consensus 251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~a 330 (362)
T 2ra8_A 251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKS 330 (362)
T ss_dssp CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHH
T ss_pred CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHH
Confidence 34557777777777654444443 366777777777777653 3444455677777777777776543333332
Q ss_pred CCCCCEEECcCCc
Q 047190 822 LRLLSVMDLSYNN 834 (1025)
Q Consensus 822 l~~L~~Ldls~N~ 834 (1025)
+ ...+|++.|+
T Consensus 331 l--g~~~~~~~~~ 341 (362)
T 2ra8_A 331 L--PMKIDVSDSQ 341 (362)
T ss_dssp C--CSEEECCSBC
T ss_pred c--CCEEEecCCc
Confidence 2 2446666665
No 152
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.63 E-value=1.5e-07 Score=104.61 Aligned_cols=141 Identities=20% Similarity=0.226 Sum_probs=91.0
Q ss_pred CchhhhhCCCCCcEEEccCCCCCCcchhhcCCCCccEEEeecCCCCCcchHHhh--hcCCCCCCCCCCcEEEccc--ccc
Q 047190 280 SIPLAFGHMASLRHLDLLSNQLREVPKFLGNMSSLKRLVFSYNELRGELSEFIQ--NVSSGSTKNSSLEWLYLAF--NEI 355 (1025)
Q Consensus 280 ~~p~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~~~--~l~~~~~~~~~L~~L~L~~--n~l 355 (1025)
.+...+..+++|+.|+|++|.-..++. +. +++|++|++..+.+.......+. .++ +|+.|+|+. |..
T Consensus 163 ~L~~ll~~~P~L~~L~L~g~~~l~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp-------~L~~L~L~~~~~~~ 233 (362)
T 2ra8_A 163 DLSPVLDAMPLLNNLKIKGTNNLSIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLP-------NLEKLVLYVGVEDY 233 (362)
T ss_dssp BCHHHHHTCTTCCEEEEECCBTCBCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCT-------TCCEEEEECBCGGG
T ss_pred CHHHHHhcCCCCcEEEEeCCCCceecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCC-------CCcEEEEecccccc
Confidence 345667778889999998873223444 33 78899999988887655544444 344 899998863 221
Q ss_pred ccc--c----CCC--CCCCCCcEEEeecccccCccccccc---ccCCcceeeccCcccccccchhh---hcCCCCCcEEE
Q 047190 356 TGT--I----PDL--GGFPSLQILSLENNRLTGTISKSIG---QLSKLELLLLSGNSLRGVISEAL---FSNLSSLDTLQ 421 (1025)
Q Consensus 356 ~~~--~----p~l--~~l~~L~~L~L~~n~l~~~~p~~l~---~l~~L~~L~L~~N~l~~~~~~~~---~~~l~~L~~L~ 421 (1025)
.+. + +.+ ..+++|++|++.+|.+.+..+..+. .+++|++|+|+.|.+.+...... +.++++|+.|+
T Consensus 234 ~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~ 313 (362)
T 2ra8_A 234 GFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFIN 313 (362)
T ss_dssp TCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEE
T ss_pred ccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEE
Confidence 111 1 112 3578888888888887754443333 46788888888888775432221 24567888888
Q ss_pred CCCCcccc
Q 047190 422 LSDNSLTL 429 (1025)
Q Consensus 422 Ls~n~l~~ 429 (1025)
+++|.++.
T Consensus 314 L~~n~i~d 321 (362)
T 2ra8_A 314 MKYNYLSD 321 (362)
T ss_dssp CCSBBCCH
T ss_pred CCCCcCCH
Confidence 88777653
No 153
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.58 E-value=2.5e-06 Score=96.26 Aligned_cols=141 Identities=9% Similarity=0.107 Sum_probs=94.3
Q ss_pred CCcccEEEccCccccccCCCcccCCCCCCEEEcCCCcccccCCcccccccCCCEEEcccCcccccCCccccCCCCccEEe
Q 047190 558 SHLLTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMD 637 (1025)
Q Consensus 558 ~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ 637 (1025)
+..|+.+.+..+ +......+|.++..|+.+.+..+ ++..-...|..+.+|+.+.+..+ +.......|.+|++|+.++
T Consensus 216 ~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~ 292 (379)
T 4h09_A 216 GKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVV 292 (379)
T ss_dssp CSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEE
T ss_pred ccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccccccccccccc
Confidence 455666666544 33345566777777888877655 55455566777777888777543 5545556777888888888
Q ss_pred CCCCcCccccChhhhhcCCCCcEEEeecCcCcccCcccccccCcccEEEccccccccccCccccCcc
Q 047190 638 LGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPKCFHNFT 704 (1025)
Q Consensus 638 Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 704 (1025)
+.++.++ .|+...+.++.+|+.+.|..+ ++..-..+|.++++|+.+.+..+ ++..-..+|.++.
T Consensus 293 l~~~~i~-~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~ 356 (379)
T 4h09_A 293 MDNSAIE-TLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSS 356 (379)
T ss_dssp ECCTTCC-EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSS
T ss_pred ccccccc-eehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCC
Confidence 8777776 677666667788888888654 55555667778888888877654 5544455665554
No 154
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.41 E-value=1.7e-05 Score=89.32 Aligned_cols=49 Identities=10% Similarity=0.151 Sum_probs=31.2
Q ss_pred cccccCCcceeeccCcccccccchhhhcCCCCCcEEECCCCccccccccCCC
Q 047190 385 SIGQLSKLELLLLSGNSLRGVISEALFSNLSSLDTLQLSDNSLTLKFSHDWT 436 (1025)
Q Consensus 385 ~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 436 (1025)
++....+|+.+.+... ++ .++..+|.++.+|+.+.+..+ ++......|.
T Consensus 41 ~~~~~~~i~~v~ip~~-vt-~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~ 89 (379)
T 4h09_A 41 WYKDRDRISEVRVNSG-IT-SIGEANFNSCYNMTKVTVAST-VTSIGDGAFA 89 (379)
T ss_dssp TGGGGGGCSEEEECTT-EE-EECTTTTTTCTTCCEEEECTT-CCEECTTTTT
T ss_pred ccccccCCEEEEeCCC-cc-ChHHHHhhCCCCCCEEEeCCc-ceEechhhhc
Confidence 4556677888887643 33 466667888888888888644 4444344443
No 155
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.31 E-value=1e-07 Score=100.24 Aligned_cols=62 Identities=26% Similarity=0.323 Sum_probs=29.4
Q ss_pred eeEEEcccCCCCC--cChhhHhhcccCCeEeccCccccccCCCCCCCCC--CccEEeCCCCcCCCcCc
Q 047190 753 IKIIDLSSNKLGG--KVLEEIMDLVGLVALNLSNNNLTGQITPRIGQLK--SLDFLDLSRNHFFGGIP 816 (1025)
Q Consensus 753 l~~LdLs~N~l~~--~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~--~L~~LdLs~N~l~g~ip 816 (1025)
|+.|+||+|+|++ .+|..+..+++|+.|+|++|+|++. ..+..+. +|++|+|++|.+++.+|
T Consensus 172 L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 172 LLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFR 237 (267)
T ss_dssp CCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred CCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccC
Confidence 3455555555554 3334445555555555555555543 1222222 45555555555554443
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.29 E-value=7.6e-08 Score=96.42 Aligned_cols=122 Identities=16% Similarity=0.139 Sum_probs=69.4
Q ss_pred ccccccCcCCCCCcEEEccCC-CCCCC---CCcccccCcccccccccccccCCCC----cchhccCCCCCCEEecccCCC
Q 047190 102 GTINPSLLKLQHLTYLDLSWN-NFSGS---PIPEFIGSLGKLSELALSSAQFAGP----IPHQLGNLSKLQVLDLRFNNL 173 (1025)
Q Consensus 102 g~l~~~l~~l~~L~~L~Ls~n-~l~~~---~~p~~l~~l~~L~~L~Ls~n~l~~~----~p~~l~~L~~L~~L~Ls~n~i 173 (1025)
..+...+...+.|++|+|++| .+... .+...+...++|++|+|++|.+.+. +...+...++|++|+|++|.+
T Consensus 26 ~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i 105 (185)
T 1io0_A 26 ETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFI 105 (185)
T ss_dssp HHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCC
T ss_pred HHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcC
Confidence 344555677888888888888 77642 1334555567777788877777643 334445556677777777765
Q ss_pred CCCCC---chhcccCCCCCeeec--cCCcCCCC--cchHHhhCCCCCCCEEEcCCCC
Q 047190 174 FSSGN---LDWLSYLSSLRYLDL--ADCKLSKF--SNWVQVLSNLRSLTNLYLGYCD 223 (1025)
Q Consensus 174 ~~~~~---~~~l~~l~~L~~L~L--~~n~l~~~--~~~~~~l~~l~~L~~L~L~~n~ 223 (1025)
...+. ...+...++|++|+| ++|.+... ..+...+...++|++|++++|.
T Consensus 106 ~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 106 SGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp CHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred CHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 22211 233455556666666 55665442 1223334444444444444443
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.23 E-value=3e-07 Score=96.69 Aligned_cols=84 Identities=24% Similarity=0.311 Sum_probs=67.4
Q ss_pred EEcccCCCC---CcChhhHhhcccCCeEeccCccccc--cCCCCCCCCCCccEEeCCCCcCCCcCcccccCCC--CCCEE
Q 047190 756 IDLSSNKLG---GKVLEEIMDLVGLVALNLSNNNLTG--QITPRIGQLKSLDFLDLSRNHFFGGIPSSLSRLR--LLSVM 828 (1025)
Q Consensus 756 LdLs~N~l~---~~ip~~~~~l~~L~~L~Ls~N~l~g--~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~--~L~~L 828 (1025)
++++.|+.. +.++....+++.|++|+||+|+|++ .+|..++.+++|+.|||++|+|++. ..+..+. .|+.|
T Consensus 148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L 225 (267)
T 3rw6_A 148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEEL 225 (267)
T ss_dssp CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEE
T ss_pred ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceE
Confidence 667777432 3333334678999999999999998 5677788999999999999999986 4455555 99999
Q ss_pred ECcCCcccccCCC
Q 047190 829 DLSYNNFSGKIPK 841 (1025)
Q Consensus 829 dls~N~l~g~ip~ 841 (1025)
++++|++++.+|.
T Consensus 226 ~L~~Npl~~~~~~ 238 (267)
T 3rw6_A 226 WLDGNSLCDTFRD 238 (267)
T ss_dssp ECTTSTTGGGCSS
T ss_pred EccCCcCccccCc
Confidence 9999999998774
No 158
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.15 E-value=9.2e-07 Score=88.43 Aligned_cols=71 Identities=13% Similarity=0.091 Sum_probs=36.5
Q ss_pred hhhhCCCCCcEEEccCC-CCCC-----cchhhcCCCCccEEEeecCCCCCcchHHhhhcCCCCCCCCCCcEEEccccccc
Q 047190 283 LAFGHMASLRHLDLLSN-QLRE-----VPKFLGNMSSLKRLVFSYNELRGELSEFIQNVSSGSTKNSSLEWLYLAFNEIT 356 (1025)
Q Consensus 283 ~~~~~l~~L~~L~Ls~n-~l~~-----lp~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~l~ 356 (1025)
..+...++|++|+|++| .+.. +...+...++|++|+|++|.+.......+...- ...++|++|+|++|.+.
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L---~~n~~L~~L~L~~N~i~ 106 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEML---KVNNTLKSLNVESNFIS 106 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHH---HHCSSCCEEECCSSCCC
T ss_pred HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHH---HhCCCcCEEECcCCcCC
Confidence 34455566666666666 5553 234455566666666666666543322222110 01115566666655554
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.87 E-value=5.6e-06 Score=80.51 Aligned_cols=84 Identities=13% Similarity=0.148 Sum_probs=45.3
Q ss_pred CCCcEEEccCCCCCCCCCcccccCccccccccccccc-CCCCcchhccCC----CCCCEEecccCCCCCCCCchhcccCC
Q 047190 112 QHLTYLDLSWNNFSGSPIPEFIGSLGKLSELALSSAQ-FAGPIPHQLGNL----SKLQVLDLRFNNLFSSGNLDWLSYLS 186 (1025)
Q Consensus 112 ~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~-l~~~~p~~l~~L----~~L~~L~Ls~n~i~~~~~~~~l~~l~ 186 (1025)
..|+.||++++.++.. --..+..+++|++|+|++|. +++..-..++.+ ++|++|+|++|.-.+......+..++
T Consensus 61 ~~L~~LDLs~~~Itd~-GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~ 139 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSI-GFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR 139 (176)
T ss_dssp CCEEEEEEESCCCCGG-GGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred ceEeEEeCcCCCccHH-HHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence 4577777777766554 22344566666666666663 554444444443 24666666665421222233445555
Q ss_pred CCCeeeccCC
Q 047190 187 SLRYLDLADC 196 (1025)
Q Consensus 187 ~L~~L~L~~n 196 (1025)
+|++|++++|
T Consensus 140 ~L~~L~L~~c 149 (176)
T 3e4g_A 140 NLKYLFLSDL 149 (176)
T ss_dssp TCCEEEEESC
T ss_pred CCCEEECCCC
Confidence 5555555555
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.79 E-value=6.7e-06 Score=79.94 Aligned_cols=85 Identities=18% Similarity=0.263 Sum_probs=59.9
Q ss_pred ccccccccccccCCCCcchhccCCCCCCEEecccCCCCCCCCchhcccC----CCCCeeeccCCc-CCCCcchHHhhCCC
Q 047190 137 GKLSELALSSAQFAGPIPHQLGNLSKLQVLDLRFNNLFSSGNLDWLSYL----SSLRYLDLADCK-LSKFSNWVQVLSNL 211 (1025)
Q Consensus 137 ~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~Ls~n~i~~~~~~~~l~~l----~~L~~L~L~~n~-l~~~~~~~~~l~~l 211 (1025)
.+|++||++++.+++..-..+..+++|++|+|++|...+......++.+ ++|++|+|++|. +++ .....+.++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD--~Gl~~L~~~ 138 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTD--KGIIALHHF 138 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCH--HHHHHGGGC
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCH--HHHHHHhcC
Confidence 4688888888887766666677888888888888853333344455554 368888888874 665 234566778
Q ss_pred CCCCEEEcCCCC
Q 047190 212 RSLTNLYLGYCD 223 (1025)
Q Consensus 212 ~~L~~L~L~~n~ 223 (1025)
++|++|++++|.
T Consensus 139 ~~L~~L~L~~c~ 150 (176)
T 3e4g_A 139 RNLKYLFLSDLP 150 (176)
T ss_dssp TTCCEEEEESCT
T ss_pred CCCCEEECCCCC
Confidence 888888888875
No 161
>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A
Probab=96.99 E-value=1.8e-05 Score=74.84 Aligned_cols=68 Identities=10% Similarity=0.037 Sum_probs=42.9
Q ss_pred HHHHhhhheeehhhhHHHHHHHHhhhccccccCc-----------cccccchhhhhhhhhccceeeeccCCCCCcccccc
Q 047190 929 NFLTRVKDWLYVEAVVNIAKLQRRIQAAPEVHGW-----------HSLDQSKLLLLVYLRKILLIRTFSNLSPCETVPAE 997 (1025)
Q Consensus 929 ~~~~~~~~~~~~~~~~~l~~~~~~~~lc~~~rd~-----------~si~~s~~~~~v~s~~~~r~~t~~e~~~~t~~f~~ 997 (1025)
.|..++.+|+ .++++.||+..+.+++|+++||| ++|++||++|+|+|++|++ ++|++++-..+-
T Consensus 16 Sy~~~D~~~v-~~L~~~Le~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~I~VlS~~y~~----S~wc~~El~~al 90 (146)
T 3ub2_A 16 CHSEEDLVAA-QDLVSYLEGSTASLRCFLQLRDATPGGAIVSELCQALSSSHCRVLLITPGFLQ----DPWCKYQMLQAL 90 (146)
T ss_dssp ECCGGGHHHH-HHHHHHHHC------------------CCCEEECCTTCCEEEEEEEECHHHHH----CHHHHHHHHHHH
T ss_pred eCChhhHHHH-HHHHHHHhCcCCCeEEEEECccccccccHHHHHHHHHHhCCEEEEEECccccc----CHHHHHHHHHHH
Confidence 4445678887 68999999876789999999999 6899999999999999999 777777766655
Q ss_pred cCCc
Q 047190 998 QNSP 1001 (1025)
Q Consensus 998 ~~~~ 1001 (1025)
+..+
T Consensus 91 ~~~~ 94 (146)
T 3ub2_A 91 TEAP 94 (146)
T ss_dssp HTSS
T ss_pred HHHh
Confidence 5443
No 162
>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A
Probab=96.98 E-value=6.2e-06 Score=80.80 Aligned_cols=70 Identities=14% Similarity=0.133 Sum_probs=57.7
Q ss_pred hHHHHHhhhheeehhhhHHHHHHHHhhhccccccCc-----------cccccchhhhhhhhhccceeeeccCCCCCcccc
Q 047190 927 YYNFLTRVKDWLYVEAVVNIAKLQRRIQAAPEVHGW-----------HSLDQSKLLLLVYLRKILLIRTFSNLSPCETVP 995 (1025)
Q Consensus 927 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~lc~~~rd~-----------~si~~s~~~~~v~s~~~~r~~t~~e~~~~t~~f 995 (1025)
|..|..++.+||..++++.||++++.+++|+++||+ ++|++||++|+|+|++|++ ++||+++-..
T Consensus 39 FISys~~D~~fv~~~L~~~LE~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~IvVlS~~yl~----S~wc~~El~~ 114 (178)
T 2j67_A 39 FISYSEHDSLWVKNELIPNLEKEDGSILICLYESYFDPGKSISENIVSFIEKSYKSIFVLSPNFVQ----NEWCHYEFYF 114 (178)
T ss_dssp EEECCGGGHHHHHHTHHHHHTTCC-CCCEEEHHHHCCTTSCHHHHHHHHHHTEEEEEEEECHHHHH----HTGGGTHHHH
T ss_pred EEECCCCCHHHHHHHHHHHHhcccCCeEEEEecccCCCCccHHHHHHHHHHhCCEEEEEecccccc----cchHHHHHHH
Confidence 335556788999999999999877789999999999 6899999999999999999 8888888776
Q ss_pred cccCC
Q 047190 996 AEQNS 1000 (1025)
Q Consensus 996 ~~~~~ 1000 (1025)
+-+..
T Consensus 115 a~~~~ 119 (178)
T 2j67_A 115 AHHNL 119 (178)
T ss_dssp TTCC-
T ss_pred HHHHH
Confidence 65443
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.86 E-value=0.0016 Score=60.16 Aligned_cols=58 Identities=19% Similarity=0.182 Sum_probs=41.5
Q ss_pred eEeccCcccc-ccCCCCCCCCCCccEEeCCCCcCCCcCcccccCCCCCCEEECcCCccccc
Q 047190 779 ALNLSNNNLT-GQITPRIGQLKSLDFLDLSRNHFFGGIPSSLSRLRLLSVMDLSYNNFSGK 838 (1025)
Q Consensus 779 ~L~Ls~N~l~-g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~Ldls~N~l~g~ 838 (1025)
.++-+++.|+ ..+|..+. .+|+.|||++|+|+...+..|..+++|+.|+|++|++.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~Cd 70 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCD 70 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCS
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeecc
Confidence 4555555554 34454332 3688888888888887777888888888888888888753
No 164
>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens}
Probab=96.81 E-value=1.9e-05 Score=75.90 Aligned_cols=68 Identities=19% Similarity=0.104 Sum_probs=47.5
Q ss_pred hHHHHHhhhheeehh-----------hhHHHHHHHHhhhccccccCc-----------cccccchhhhhhhhhccc-eee
Q 047190 927 YYNFLTRVKDWLYVE-----------AVVNIAKLQRRIQAAPEVHGW-----------HSLDQSKLLLLVYLRKIL-LIR 983 (1025)
Q Consensus 927 ~~~~~~~~~~~~~~~-----------~~~~l~~~~~~~~lc~~~rd~-----------~si~~s~~~~~v~s~~~~-r~~ 983 (1025)
|..|..++.+|+.++ +...||+ ++.+++|+++||| ++|++||++|+|+|++|+ +
T Consensus 6 FISy~~~D~~wv~~~~~~~~~fv~~ll~~~LE~-~~g~~l~~~~rD~~~G~~i~~~i~~~I~~Sr~~IvVlS~~y~~~-- 82 (159)
T 1t3g_A 6 YLSYTKVDPDQWNQETGEEERFALEILPDMLEK-HYGYKLFIPDRDLIPTGTYIEDVARCVDQSKRLIIVMTPNYVVR-- 82 (159)
T ss_dssp EEECCCCC-------CCSHHHHHHTHHHHHHHH-TSCCCEECHHHHCCCCTTHHHHHHHHHHTBSEEEEEECHHHHHT--
T ss_pred EEeCccccchhhhccchhhHHHHHHHHHHHHcC-CCCeEEEEEcccccCccchHHHHHHHHHHcCEEEEEEccchhhc--
Confidence 344555667777643 3345775 6789999999999 689999999999999997 8
Q ss_pred eccCCCCCcccccccC
Q 047190 984 TFSNLSPCETVPAEQN 999 (1025)
Q Consensus 984 t~~e~~~~t~~f~~~~ 999 (1025)
++|++++-..+-+.
T Consensus 83 --S~wc~~El~~a~~~ 96 (159)
T 1t3g_A 83 --RGWSIFELETRLRN 96 (159)
T ss_dssp --TTTHHHHHSHHHHH
T ss_pred --ChHHHHHHHHHHHH
Confidence 88888776665443
No 165
>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A
Probab=96.78 E-value=1.1e-05 Score=76.90 Aligned_cols=70 Identities=11% Similarity=0.161 Sum_probs=56.9
Q ss_pred hHHHHHhhhheeehhhhHHHHHHHHhhhccccccCc-----------cccccchhhhhhhhhccceeeeccCCCCCcccc
Q 047190 927 YYNFLTRVKDWLYVEAVVNIAKLQRRIQAAPEVHGW-----------HSLDQSKLLLLVYLRKILLIRTFSNLSPCETVP 995 (1025)
Q Consensus 927 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~lc~~~rd~-----------~si~~s~~~~~v~s~~~~r~~t~~e~~~~t~~f 995 (1025)
|..|..++.+||..++++.||+.++.++.|+++||+ ++|++||++|+|+|++|++ ++|++++-..
T Consensus 9 FiSy~~~D~~~v~~~L~~~Le~~~~g~~~~~~~rd~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~----S~wc~~El~~ 84 (149)
T 1fyx_A 9 FVSYSERDAYWVENLMVQELENFNPPFKLXLHKRDFIHGKWIIDNIIDSIEKSHKTVFVLSENFVK----SEWXKYELDF 84 (149)
T ss_dssp EEECCGGGHHHHHTHHHHHHTTSSSCCCEEEHHHHCCSSSCHHHHHHHHHHHEEEEEEEECHHHHH----HHTHHHHSCC
T ss_pred EEECCcccHHHHHHHHHHHHhcCCCCeEEeeccccCCCchhHHHHHHHHHHHcCEEEEEeCcchhc----cchHHHHHHH
Confidence 344556777899888999998765689999999998 6899999999999999998 6777777666
Q ss_pred cccCC
Q 047190 996 AEQNS 1000 (1025)
Q Consensus 996 ~~~~~ 1000 (1025)
+-+..
T Consensus 85 a~~~~ 89 (149)
T 1fyx_A 85 SHFRL 89 (149)
T ss_dssp SCCTT
T ss_pred HHHHH
Confidence 55443
No 166
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.78 E-value=0.001 Score=65.81 Aligned_cols=34 Identities=24% Similarity=0.116 Sum_probs=14.4
Q ss_pred CCCCcEEEccCCCCCC-----cchhhcCCCCccEEEeec
Q 047190 288 MASLRHLDLLSNQLRE-----VPKFLGNMSSLKRLVFSY 321 (1025)
Q Consensus 288 l~~L~~L~Ls~n~l~~-----lp~~l~~l~~L~~L~Ls~ 321 (1025)
-+.|++|+|++|.|+. +-+.+..-+.|++|+|++
T Consensus 97 N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n 135 (197)
T 1pgv_A 97 SPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADN 135 (197)
T ss_dssp CSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCC
T ss_pred CCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCC
Confidence 3444444444444442 223333334444555443
No 167
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.67 E-value=0.0007 Score=67.04 Aligned_cols=16 Identities=6% Similarity=0.254 Sum_probs=7.1
Q ss_pred CCCCCcEEEccCCCCC
Q 047190 287 HMASLRHLDLLSNQLR 302 (1025)
Q Consensus 287 ~l~~L~~L~Ls~n~l~ 302 (1025)
.-+.|+.|+|++|.+.
T Consensus 68 ~N~~L~~L~L~~n~ig 83 (197)
T 1pgv_A 68 NSKHIEKFSLANTAIS 83 (197)
T ss_dssp TCSCCCEEECTTSCCB
T ss_pred hCCCcCEEEccCCCCC
Confidence 3344444444444443
No 168
>2js7_A Myeloid differentiation primary response protein MYD88; MYD88_human, TIR domain, TOLL like receptor adaptor domain, innate immune signaling; NMR {Homo sapiens} PDB: 2z5v_A
Probab=96.28 E-value=5.8e-05 Score=72.65 Aligned_cols=65 Identities=14% Similarity=0.138 Sum_probs=52.6
Q ss_pred HhhhheeehhhhHHHHHHHHhhhccccccCc-----------cccc-cchhhhhhhhhccceeeeccCCCCCcccccccC
Q 047190 932 TRVKDWLYVEAVVNIAKLQRRIQAAPEVHGW-----------HSLD-QSKLLLLVYLRKILLIRTFSNLSPCETVPAEQN 999 (1025)
Q Consensus 932 ~~~~~~~~~~~~~~l~~~~~~~~lc~~~rd~-----------~si~-~s~~~~~v~s~~~~r~~t~~e~~~~t~~f~~~~ 999 (1025)
.++.+|+. ++++.||+.++.++.|++.||+ ++|+ +||++|+|+|++|++ ++|+.++-..+-+.
T Consensus 25 ~~D~~fv~-~L~~~Le~~~~g~~~~~~~rd~~~G~~i~~~i~~~I~~~Sr~~IvVlS~~y~~----S~wc~~El~~a~~~ 99 (160)
T 2js7_A 25 PSDIQFVQ-EMIRQLEQTNYRLKLCVSDRDVLPGTCVWSIASELIEKRCRRMVVVVSDDYLQ----SKECDFQTKFALSL 99 (160)
T ss_dssp GGGHHHHH-HHHHHHHTSSSCCCCEESCCSSSSSCSCCCCCGGGHHHHEEEEEEECCHHHHH----SHHHHHHHHHHHHH
T ss_pred cccHHHHH-HHHHHHhcCCCceEEEEeCCCCCCCCcHHHHHHHHHHHhCCEEEEEECcchhc----CHHHHHHHHHHHHH
Confidence 45678886 7888998866679999999998 5787 799999999999999 77777776666554
Q ss_pred Cc
Q 047190 1000 SP 1001 (1025)
Q Consensus 1000 ~~ 1001 (1025)
.+
T Consensus 100 ~~ 101 (160)
T 2js7_A 100 SP 101 (160)
T ss_dssp CT
T ss_pred HH
Confidence 43
No 169
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.65 E-value=0.017 Score=53.25 Aligned_cols=35 Identities=29% Similarity=0.394 Sum_probs=15.3
Q ss_pred ccEEeCCCCcCccccChhhhhcCCCCcEEEeecCcC
Q 047190 633 LTLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKF 668 (1025)
Q Consensus 633 L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l 668 (1025)
|+.|+|++|+|+ .+|...+..+++|++|+|++|.+
T Consensus 33 l~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 33 TTELVLTGNNLT-ALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp CSEEECTTSCCS-SCCTTTGGGCTTCCEEECCSSCC
T ss_pred CCEEECCCCcCC-ccChhhhhhccccCEEEecCCCe
Confidence 444444444444 34443333444444444444444
No 170
>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum}
Probab=59.20 E-value=0.35 Score=47.44 Aligned_cols=52 Identities=12% Similarity=0.065 Sum_probs=36.7
Q ss_pred eehhhhHHHHHHHHhhhccccccCc-----------cccccchhhhhhhhhccceeeec-cCCCCC
Q 047190 938 LYVEAVVNIAKLQRRIQAAPEVHGW-----------HSLDQSKLLLLVYLRKILLIRTF-SNLSPC 991 (1025)
Q Consensus 938 ~~~~~~~~l~~~~~~~~lc~~~rd~-----------~si~~s~~~~~v~s~~~~r~~t~-~e~~~~ 991 (1025)
+...+.+.|++ +.++.|.+.+++ ++|+.||..|+|+|++|+..-|+ .||.++
T Consensus 51 Fv~~L~~aL~~--~GI~~f~D~~el~~G~~I~~~l~~aIe~Sri~IvV~S~nYa~S~WCl~EL~~I 114 (204)
T 3ozi_A 51 FTDFLYQSLRR--YKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYVPIISSGYADSKWCLMELAEI 114 (204)
T ss_dssp HHHHHHHHHHH--TTCCEEEEETTTCCGGGTTTTHHHHHHHCSEEEEEECTTGGGCHHHHHHHHHH
T ss_pred HHHHHHHHHHH--CCCcEEEeCCccCCCCchHHHHHHHHHhCcEeeEEEEcccccCcHHHHHHHHH
Confidence 34455566664 567888887766 58899999999999999984333 344433
No 171
>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222}
Probab=55.67 E-value=0.64 Score=43.94 Aligned_cols=51 Identities=8% Similarity=0.003 Sum_probs=35.8
Q ss_pred eeehhhhHHHHHHHHhhhccccccCc-----------cccccchhhhhhhhhccceeeeccCCCCCcc
Q 047190 937 WLYVEAVVNIAKLQRRIQAAPEVHGW-----------HSLDQSKLLLLVYLRKILLIRTFSNLSPCET 993 (1025)
Q Consensus 937 ~~~~~~~~~l~~~~~~~~lc~~~rd~-----------~si~~s~~~~~v~s~~~~r~~t~~e~~~~t~ 993 (1025)
++...+...|++ +.++.|...+|+ ..|++|+.+|+|+|++|+. ++||..+-
T Consensus 34 ~~~~~L~~~L~~--~gi~v~~D~~~l~~G~~~~~~i~~ai~~s~~~i~v~S~~y~~----S~wc~~El 95 (154)
T 3h16_A 34 DFVEALAHTLRA--AGAEVWYDDFSLRPGDSLRRSIDKGLGSSRFGIVVLSTHFFK----KEWPQKEL 95 (154)
T ss_dssp TTHHHHHHHHHH--HTCCEECGGGEECTTCCHHHHHHHHHTSEEEEEEEEEHHHHT----TCCCHHHH
T ss_pred HHHHHHHHHHHH--CCCcEEEcHHhCCCccHHHHHHHHHHHhCcEEEEEeCcchhc----ChHHHHHH
Confidence 344445555654 456777776654 6889999999999999998 55555443
No 172
>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana}
Probab=43.62 E-value=1.2 Score=42.64 Aligned_cols=46 Identities=9% Similarity=0.062 Sum_probs=32.6
Q ss_pred eeehhhhHHHHHHHHhhhccccccCc-----------cccccchhhhhhhhhccceeee
Q 047190 937 WLYVEAVVNIAKLQRRIQAAPEVHGW-----------HSLDQSKLLLLVYLRKILLIRT 984 (1025)
Q Consensus 937 ~~~~~~~~~l~~~~~~~~lc~~~rd~-----------~si~~s~~~~~v~s~~~~r~~t 984 (1025)
++...+...|++ +.++.|.+.+++ ++|+.||..|+|+|++|+..-|
T Consensus 23 ~Fv~~L~~~L~~--~gi~~f~D~~~l~~G~~i~~~l~~aIe~Sri~IvV~S~ny~~S~W 79 (176)
T 3jrn_A 23 NFISFLYKELVR--RSIRTFKDDKELENGQRFSPELKSPIEVSRFAVVVVSENYAASSW 79 (176)
T ss_dssp THHHHHHHHHHH--TTCCEECCCC--------------CCTTEEEEEEEECTTTTTCHH
T ss_pred HHHHHHHHHHHH--CCCEEEEEcccccCCCchHHHHHHHHHhCCEEEEEecCCcCCChh
Confidence 444556666665 567788876665 6899999999999999998433
Done!