Query 047191
Match_columns 341
No_of_seqs 133 out of 1381
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 08:38:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047191.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047191hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2120 SCF ubiquitin ligase, 99.6 6.9E-17 1.5E-21 137.9 0.1 275 7-332 98-391 (419)
2 KOG4341 F-box protein containi 99.2 2.4E-13 5.2E-18 121.3 -3.9 281 9-336 74-380 (483)
3 PF12937 F-box-like: F-box-lik 98.8 2.2E-09 4.7E-14 68.1 3.0 35 7-41 1-35 (47)
4 PF00646 F-box: F-box domain; 98.5 4.8E-08 1E-12 62.2 1.3 37 7-43 3-39 (48)
5 smart00256 FBOX A Receptor for 98.3 4.7E-07 1E-11 55.4 2.4 33 10-42 1-33 (41)
6 KOG3207 Beta-tubulin folding c 98.1 1.2E-07 2.7E-12 85.7 -3.5 199 123-337 120-335 (505)
7 PLN00113 leucine-rich repeat r 98.0 4.6E-06 9.9E-11 87.2 4.7 210 117-339 110-343 (968)
8 KOG1909 Ran GTPase-activating 97.9 6.7E-06 1.4E-10 72.7 2.1 173 145-338 90-280 (382)
9 PLN00113 leucine-rich repeat r 97.8 1.5E-05 3.2E-10 83.4 4.1 17 271-287 303-319 (968)
10 PLN03210 Resistant to P. syrin 97.7 2.5E-05 5.3E-10 82.9 4.5 104 122-235 609-714 (1153)
11 KOG4341 F-box protein containi 97.6 4.9E-06 1.1E-10 75.2 -2.4 204 123-337 189-435 (483)
12 cd00116 LRR_RI Leucine-rich re 97.6 5.4E-06 1.2E-10 75.1 -2.5 213 120-339 47-289 (319)
13 KOG4194 Membrane glycoprotein 97.6 6.9E-06 1.5E-10 77.3 -2.0 33 123-158 196-230 (873)
14 PLN03210 Resistant to P. syrin 97.5 8.8E-05 1.9E-09 78.7 4.4 78 124-207 589-667 (1153)
15 cd00116 LRR_RI Leucine-rich re 97.4 2.9E-05 6.4E-10 70.3 -0.6 211 123-340 22-262 (319)
16 KOG4194 Membrane glycoprotein 97.2 0.00017 3.8E-09 68.2 1.9 207 120-339 98-328 (873)
17 KOG1947 Leucine rich repeat pr 97.2 1.8E-05 4E-10 75.8 -4.9 108 121-235 211-331 (482)
18 KOG2120 SCF ubiquitin ligase, 97.1 0.00011 2.3E-09 64.1 -0.4 111 119-238 255-376 (419)
19 KOG1947 Leucine rich repeat pr 96.9 0.00025 5.3E-09 68.0 0.4 37 301-337 293-330 (482)
20 KOG3207 Beta-tubulin folding c 96.7 0.00038 8.2E-09 63.7 -0.1 109 123-238 171-284 (505)
21 PF14580 LRR_9: Leucine-rich r 96.6 0.00097 2.1E-08 54.7 1.5 65 271-337 83-149 (175)
22 KOG3665 ZYG-1-like serine/thre 95.7 0.0015 3.3E-08 65.1 -1.8 152 172-335 122-282 (699)
23 KOG2123 Uncharacterized conser 95.5 0.0011 2.5E-08 57.3 -2.9 98 226-334 20-123 (388)
24 KOG3665 ZYG-1-like serine/thre 95.5 0.008 1.7E-07 60.1 2.3 132 124-289 122-263 (699)
25 KOG2982 Uncharacterized conser 95.4 0.0038 8.2E-08 54.7 -0.2 195 126-337 47-258 (418)
26 PF07723 LRR_2: Leucine Rich R 95.4 0.0058 1.3E-07 32.9 0.5 23 148-172 1-26 (26)
27 PF14580 LRR_9: Leucine-rich r 95.2 0.0023 4.9E-08 52.6 -2.1 56 123-182 41-98 (175)
28 KOG0281 Beta-TrCP (transducin 95.0 0.0064 1.4E-07 53.9 0.0 38 3-40 71-112 (499)
29 KOG1259 Nischarin, modulator o 95.0 0.0063 1.4E-07 53.4 -0.1 58 123-183 181-248 (490)
30 PRK15387 E3 ubiquitin-protein 94.9 0.041 8.9E-07 55.6 5.3 29 125-158 223-251 (788)
31 PF13855 LRR_8: Leucine rich r 94.5 0.011 2.3E-07 39.3 0.0 55 124-182 1-59 (61)
32 KOG2997 F-box protein FBX9 [Ge 94.2 0.026 5.6E-07 49.7 1.8 34 7-40 107-145 (366)
33 PLN03215 ascorbic acid mannose 94.0 0.031 6.7E-07 51.2 2.0 37 7-43 4-41 (373)
34 PRK15387 E3 ubiquitin-protein 93.5 0.042 9.2E-07 55.5 2.2 96 123-236 241-353 (788)
35 PRK15370 E3 ubiquitin-protein 93.5 0.046 1E-06 55.3 2.5 34 304-337 389-424 (754)
36 PRK15370 E3 ubiquitin-protein 93.0 0.074 1.6E-06 53.8 3.1 71 124-206 199-271 (754)
37 PF13855 LRR_8: Leucine rich r 92.2 0.14 3E-06 33.8 2.6 40 270-312 19-58 (61)
38 COG5238 RNA1 Ran GTPase-activa 91.8 0.089 1.9E-06 45.8 1.6 156 162-336 110-280 (388)
39 PF12799 LRR_4: Leucine Rich r 90.4 0.12 2.6E-06 31.8 0.8 33 277-313 2-34 (44)
40 KOG0444 Cytoskeletal regulator 90.2 0.0023 5E-08 61.4 -10.3 33 301-336 337-370 (1255)
41 KOG1259 Nischarin, modulator o 90.1 0.18 3.9E-06 44.6 1.9 56 147-206 182-246 (490)
42 PF12799 LRR_4: Leucine Rich r 88.3 0.22 4.8E-06 30.6 0.8 32 148-183 2-35 (44)
43 KOG0618 Serine/threonine phosp 88.0 0.026 5.7E-07 56.7 -5.2 177 117-313 280-486 (1081)
44 PF07723 LRR_2: Leucine Rich R 87.7 0.68 1.5E-05 24.8 2.4 25 304-328 1-26 (26)
45 KOG1644 U2-associated snRNP A' 87.5 0.67 1.4E-05 38.7 3.4 56 123-182 63-123 (233)
46 PRK15386 type III secretion pr 87.4 1 2.2E-05 42.1 5.0 69 123-206 51-121 (426)
47 KOG2982 Uncharacterized conser 87.2 0.38 8.2E-06 42.6 1.9 83 147-237 45-133 (418)
48 KOG0274 Cdc4 and related F-box 86.3 0.32 7E-06 47.3 1.2 39 2-40 103-141 (537)
49 KOG0617 Ras suppressor protein 85.0 0.036 7.8E-07 44.9 -5.0 61 119-181 28-88 (264)
50 PF13013 F-box-like_2: F-box-l 84.6 0.55 1.2E-05 35.1 1.5 30 6-35 21-50 (109)
51 KOG2739 Leucine-rich acidic nu 83.6 0.43 9.2E-06 41.3 0.5 39 274-313 63-101 (260)
52 KOG1644 U2-associated snRNP A' 82.8 0.76 1.7E-05 38.4 1.7 69 269-339 81-151 (233)
53 COG4886 Leucine-rich repeat (L 82.7 0.55 1.2E-05 43.9 1.0 165 123-313 115-287 (394)
54 COG5238 RNA1 Ran GTPase-activa 82.3 0.96 2.1E-05 39.6 2.2 198 123-340 29-254 (388)
55 KOG1909 Ran GTPase-activating 81.7 1.4 3E-05 39.8 3.0 36 302-337 184-222 (382)
56 KOG3864 Uncharacterized conser 81.5 0.51 1.1E-05 39.3 0.3 37 301-338 149-186 (221)
57 KOG0444 Cytoskeletal regulator 81.3 0.038 8.3E-07 53.4 -7.2 36 301-338 220-255 (1255)
58 KOG1859 Leucine-rich repeat pr 80.2 0.32 6.9E-06 48.2 -1.5 60 78-139 53-123 (1096)
59 smart00367 LRR_CC Leucine-rich 78.7 1.6 3.4E-05 23.2 1.5 24 302-325 1-25 (26)
60 KOG4237 Extracellular matrix p 74.3 2.4 5.2E-05 39.2 2.4 94 224-326 273-373 (498)
61 PF08387 FBD: FBD; InterPro: 74.2 3.1 6.8E-05 26.3 2.3 35 302-336 13-50 (51)
62 KOG2739 Leucine-rich acidic nu 72.6 1.8 3.9E-05 37.5 1.1 106 124-235 43-153 (260)
63 PRK15386 type III secretion pr 71.7 6.6 0.00014 36.9 4.6 56 168-235 48-104 (426)
64 KOG4658 Apoptotic ATPase [Sign 71.1 1.4 3E-05 45.8 0.1 15 299-313 713-727 (889)
65 KOG0618 Serine/threonine phosp 70.5 0.82 1.8E-05 46.5 -1.6 37 299-337 237-273 (1081)
66 PLN03150 hypothetical protein; 69.1 2.7 5.8E-05 42.0 1.7 79 125-207 419-500 (623)
67 KOG2123 Uncharacterized conser 67.7 0.93 2E-05 39.8 -1.6 64 269-337 34-97 (388)
68 KOG3864 Uncharacterized conser 63.4 3.8 8.2E-05 34.3 1.2 25 159-183 138-162 (221)
69 PLN03150 hypothetical protein; 60.7 5.3 0.00011 40.0 1.9 80 148-236 419-501 (623)
70 PF13516 LRR_6: Leucine Rich r 60.6 3.6 7.9E-05 21.2 0.4 13 171-183 1-13 (24)
71 KOG0617 Ras suppressor protein 59.0 1.6 3.4E-05 35.6 -1.7 11 171-181 101-111 (264)
72 smart00579 FBD domain in FBox 57.4 9.4 0.0002 25.9 2.2 33 304-336 6-41 (72)
73 KOG3926 F-box proteins [Amino 54.7 3.4 7.3E-05 35.9 -0.5 49 6-54 201-256 (332)
74 KOG4658 Apoptotic ATPase [Sign 52.1 3.7 8E-05 42.7 -0.8 66 269-338 710-780 (889)
75 PF13504 LRR_7: Leucine rich r 49.5 8.1 0.00018 18.2 0.6 11 173-183 2-12 (17)
76 KOG0531 Protein phosphatase 1, 46.6 1 2.3E-05 42.4 -5.4 77 120-206 91-171 (414)
77 KOG0472 Leucine-rich repeat pr 46.0 4.2 9.1E-05 37.8 -1.3 85 117-206 199-284 (565)
78 PF00560 LRR_1: Leucine Rich R 45.1 13 0.00029 18.6 1.0 15 125-140 1-15 (22)
79 KOG4408 Putative Mg2+ and Co2+ 43.5 6.3 0.00014 35.4 -0.5 39 7-45 8-46 (386)
80 COG4886 Leucine-rich repeat (L 37.3 6.1 0.00013 36.8 -1.8 172 143-338 112-287 (394)
81 KOG0531 Protein phosphatase 1, 37.2 13 0.00028 35.1 0.4 56 275-337 139-195 (414)
82 KOG0472 Leucine-rich repeat pr 37.1 7.3 0.00016 36.3 -1.2 22 316-337 516-537 (565)
83 KOG4579 Leucine-rich repeat (L 32.2 16 0.00035 28.8 0.2 60 120-184 49-112 (177)
84 COG4829 CatC1 Muconolactone de 31.3 10 0.00022 26.7 -0.9 36 10-45 11-48 (98)
85 PF08004 DUF1699: Protein of u 30.6 78 0.0017 24.3 3.5 21 315-335 28-48 (131)
86 KOG4237 Extracellular matrix p 27.2 40 0.00087 31.5 1.8 67 269-340 267-334 (498)
87 PF06881 Elongin_A: RNA polyme 23.9 82 0.0018 23.4 2.7 29 6-34 3-31 (109)
88 PF00220 Hormone_4: Neurohypop 20.4 25 0.00054 13.7 -0.4 6 323-328 2-7 (9)
No 1
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=6.9e-17 Score=137.91 Aligned_cols=275 Identities=19% Similarity=0.144 Sum_probs=169.4
Q ss_pred cCCCChHHHHHHHcCCChhhhhhhhccccchHHhhcc---CceeEeecCCCCCCCCCCCCCcchHHHHHHHHhcCCCCE-
Q 047191 7 INALPDSVLCHILSYLPTKNVVATSILARRWKLVWTS---LQKLYFDDRQSRRLPGMMGDPMPGFEDFIERVLTGTQPM- 82 (341)
Q Consensus 7 is~LPd~iL~~Ils~Lp~~~~~~~s~vskrWr~lw~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~i- 82 (341)
...|||||+..|||.|+.||+.+.+.|||||+++-+- ...++...+... +. ...+.+.++--+
T Consensus 98 ~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW~~lDl~~r~i~---------p~----~l~~l~~rgV~v~ 164 (419)
T KOG2120|consen 98 WDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESLWQTLDLTGRNIH---------PD----VLGRLLSRGVIVF 164 (419)
T ss_pred cccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccceeeeccCCCccC---------hh----HHHHHHhCCeEEE
Confidence 4579999999999999999999999999999976432 112333333321 11 222222233333
Q ss_pred EEEEEEeecCCCchhHHHHHHHHhcccccccccc--------cccccccCcceEEEEeeeeeeccCCC--cccCCchhhh
Q 047191 83 NITIFFMHCSKLLGVMLGRLNYILTRITALSCLC--------QIELYASPSVEVLKLMSDFLLKVPAG--GTCFPNVKIL 152 (341)
Q Consensus 83 ~l~l~~~~~~~~~~~~~~wl~~~~~~l~~L~~~~--------p~~~~~~~~L~~L~L~~~~~l~~~~~--~~~~~~L~~L 152 (341)
++.-.+ ...+... .-..-...++|.++..- ...+..|..|+.|+| .+..+.++.. ...-.+|+.|
T Consensus 165 Rlar~~---~~~prla-e~~~~frsRlq~lDLS~s~it~stl~~iLs~C~kLk~lSl-Eg~~LdD~I~~~iAkN~~L~~l 239 (419)
T KOG2120|consen 165 RLARSF---MDQPRLA-EHFSPFRSRLQHLDLSNSVITVSTLHGILSQCSKLKNLSL-EGLRLDDPIVNTIAKNSNLVRL 239 (419)
T ss_pred Ecchhh---hcCchhh-hhhhhhhhhhHHhhcchhheeHHHHHHHHHHHHhhhhccc-cccccCcHHHHHHhccccceee
Confidence 443222 1111111 11111122266664322 233456999999999 8888876531 2234899999
Q ss_pred hhhccC---CCcchHHHHHhcCCccceeEEeeeecCCCCce-eEEEeCCCcceEEEeeecCccccccCceeEEEecCCce
Q 047191 153 TMQLES---PDNILTEKLFCSCPSLEELSIQAYLNDEGPTT-KFVISSSTLKQCTLWVETEGEMFTQAEYKVRITAPSLE 228 (341)
Q Consensus 153 ~~~L~~---~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~-~l~i~~~sL~~L~i~~c~~~~~~~~~~~~~~~~~p~L~ 228 (341)
+|.. +++.+++-++++|..|.+|+|..|....-.++ .+.--+++|+.|++++|. ..+..+....++-.+|+|.
T Consensus 240 --nlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~r-rnl~~sh~~tL~~rcp~l~ 316 (419)
T KOG2120|consen 240 --NLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYR-RNLQKSHLSTLVRRCPNLV 316 (419)
T ss_pred --ccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhH-hhhhhhHHHHHHHhCCcee
Confidence 8888 99999999999999999999999966421110 122246889999999963 2322234555666789999
Q ss_pred EEEeeccccCceeecCCCCeeEEEEEEEeCccccCCCccchHHhhcCCCceEEEEecch-hhhccccccCCCCCCCcccE
Q 047191 229 RLHIMSDIFGKFVVHDLNSLTDVILDIVYGEWSRVDPNRSIQLLQQLNNTTSLTVSYGV-LCALDHAYHKWFPALSYLQH 307 (341)
Q Consensus 229 ~l~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~L~l~~~~-~~~~~~~~~~~~~~f~~L~~ 307 (341)
.|+++++..-+.. ..+.+-.++-+++|.++-.. +..- ....+..-|.|+.
T Consensus 317 ~LDLSD~v~l~~~--------------------------~~~~~~kf~~L~~lSlsRCY~i~p~---~~~~l~s~psl~y 367 (419)
T KOG2120|consen 317 HLDLSDSVMLKND--------------------------CFQEFFKFNYLQHLSLSRCYDIIPE---TLLELNSKPSLVY 367 (419)
T ss_pred eeccccccccCch--------------------------HHHHHHhcchheeeehhhhcCCChH---HeeeeccCcceEE
Confidence 9999876542110 04444456677777775422 1000 0111224567999
Q ss_pred EEEEEcCCChhHHHHHHhcCCCCCc
Q 047191 308 LEVAVGAIGWAVLPVILSSSVHLQS 332 (341)
Q Consensus 308 L~l~~~~~~~~~l~~ll~~cp~L~~ 332 (341)
|++..+ ..+..+..+.+.||+|+.
T Consensus 368 Ldv~g~-vsdt~mel~~e~~~~lki 391 (419)
T KOG2120|consen 368 LDVFGC-VSDTTMELLKEMLSHLKI 391 (419)
T ss_pred EEeccc-cCchHHHHHHHhCccccc
Confidence 999887 333456778899999875
No 2
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.25 E-value=2.4e-13 Score=121.30 Aligned_cols=281 Identities=15% Similarity=0.127 Sum_probs=134.7
Q ss_pred CCChHHHHHHHcCCChhhhhhhhccccchHHh------hccCceeEeecCCCCCCCCCCCCCcchHHHHHHHHhcCC-CC
Q 047191 9 ALPDSVLCHILSYLPTKNVVATSILARRWKLV------WTSLQKLYFDDRQSRRLPGMMGDPMPGFEDFIERVLTGT-QP 81 (341)
Q Consensus 9 ~LPd~iL~~Ils~Lp~~~~~~~s~vskrWr~l------w~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~-~~ 81 (341)
.||.|++.+|||+|+++++.|++.+|+-|..+ |.++.-.+|... . + ...|..+..+. +.
T Consensus 74 ~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~~~~q~idL~t~~rD-v---~----------g~VV~~~~~Rcgg~ 139 (483)
T KOG4341|consen 74 SLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDGSCWQHIDLFTFQRD-V---D----------GGVVENMISRCGGF 139 (483)
T ss_pred cCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhccccceeeehhcchhc-C---C----------CcceehHhhhhccc
Confidence 49999999999999999999999999999865 332221111110 0 0 11222233321 23
Q ss_pred E-EEEEEEeecCCCchhHHHHHHHHhcccccccccccccccccCcceEEEEeeeee-eccCC---CcccCCchhhhhhhc
Q 047191 82 M-NITIFFMHCSKLLGVMLGRLNYILTRITALSCLCQIELYASPSVEVLKLMSDFL-LKVPA---GGTCFPNVKILTMQL 156 (341)
Q Consensus 82 i-~l~l~~~~~~~~~~~~~~wl~~~~~~l~~L~~~~p~~~~~~~~L~~L~L~~~~~-l~~~~---~~~~~~~L~~L~~~L 156 (341)
+ .+++.- ..+.....+.. ....|+++++|.+ .+|. +.+.. .+..+++|+.| .|
T Consensus 140 lk~LSlrG-~r~v~~sslrt------------------~~~~CpnIehL~l-~gc~~iTd~s~~sla~~C~~l~~l--~L 197 (483)
T KOG4341|consen 140 LKELSLRG-CRAVGDSSLRT------------------FASNCPNIEHLAL-YGCKKITDSSLLSLARYCRKLRHL--NL 197 (483)
T ss_pred cccccccc-cccCCcchhhH------------------HhhhCCchhhhhh-hcceeccHHHHHHHHHhcchhhhh--hh
Confidence 3 444444 22222211110 0112555555555 4433 11110 12235666666 66
Q ss_pred cC---CCcchHHHHHhcCCccceeEEeeeec---CCCCceeEEEeCCCcceEEEeeecCccccccCceeEEEecCCceEE
Q 047191 157 ES---PDNILTEKLFCSCPSLEELSIQAYLN---DEGPTTKFVISSSTLKQCTLWVETEGEMFTQAEYKVRITAPSLERL 230 (341)
Q Consensus 157 ~~---~~~~~l~~ll~~cp~Le~L~L~~c~~---~~~~~~~l~i~~~sL~~L~i~~c~~~~~~~~~~~~~~~~~p~L~~l 230 (341)
.. +|+..+..+..+||+|+.|++..|.- .+++ .+.-.+..++.+...+|...++ .....+.-.++.+.++
T Consensus 198 ~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~--~~~rG~~~l~~~~~kGC~e~~l--e~l~~~~~~~~~i~~l 273 (483)
T KOG4341|consen 198 HSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQ--ALQRGCKELEKLSLKGCLELEL--EALLKAAAYCLEILKL 273 (483)
T ss_pred cccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcch--HHhccchhhhhhhhcccccccH--HHHHHHhccChHhhcc
Confidence 55 56666666666666666666666632 1122 2222333344444444432222 2222223233333333
Q ss_pred Eeecccc-Ccee----ecCCCCeeEEEEEEEeCccccCCCccc-hHHhhcCCCceEEEEecchhhhccccccCCC-CCCC
Q 047191 231 HIMSDIF-GKFV----VHDLNSLTDVILDIVYGEWSRVDPNRS-IQLLQQLNNTTSLTVSYGVLCALDHAYHKWF-PALS 303 (341)
Q Consensus 231 ~~~~~~~-~~~~----~~~~~~L~~~~l~~~~~~~~~~~~~~~-~~~l~~~~~l~~L~l~~~~~~~~~~~~~~~~-~~f~ 303 (341)
.+..+.. .... -.++..|+.+...-+... .... ..+-++..+++.|.+....- +....+..+ .+.+
T Consensus 274 nl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~-----~d~~l~aLg~~~~~L~~l~l~~c~~--fsd~~ft~l~rn~~ 346 (483)
T KOG4341|consen 274 NLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDI-----TDEVLWALGQHCHNLQVLELSGCQQ--FSDRGFTMLGRNCP 346 (483)
T ss_pred chhhhccccchHHHHHhhhhhHhhhhcccCCCCC-----chHHHHHHhcCCCceEEEeccccch--hhhhhhhhhhcCCh
Confidence 3222110 0000 011112222111111000 0001 66667778888888865421 111111111 1566
Q ss_pred cccEEEEEEc-CCChhHHHHHHhcCCCCCcEEEe
Q 047191 304 YLQHLEVAVG-AIGWAVLPVILSSSVHLQSLVLR 336 (341)
Q Consensus 304 ~L~~L~l~~~-~~~~~~l~~ll~~cp~L~~L~l~ 336 (341)
.|+.|.++.+ ...+..+.++-.+||.|++|.++
T Consensus 347 ~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lsls 380 (483)
T KOG4341|consen 347 HLERLDLEECGLITDGTLASLSRNCPRLRVLSLS 380 (483)
T ss_pred hhhhhcccccceehhhhHhhhccCCchhccCChh
Confidence 7888888877 44455678888888888888776
No 3
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=98.84 E-value=2.2e-09 Score=68.10 Aligned_cols=35 Identities=37% Similarity=0.813 Sum_probs=31.1
Q ss_pred cCCCChHHHHHHHcCCChhhhhhhhccccchHHhh
Q 047191 7 INALPDSVLCHILSYLPTKNVVATSILARRWKLVW 41 (341)
Q Consensus 7 is~LPd~iL~~Ils~Lp~~~~~~~s~vskrWr~lw 41 (341)
|+.||+||+.+||++|+.+|.++++.|||+|+++.
T Consensus 1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~ 35 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIA 35 (47)
T ss_dssp CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHH
T ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999875
No 4
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.48 E-value=4.8e-08 Score=62.20 Aligned_cols=37 Identities=38% Similarity=0.766 Sum_probs=31.3
Q ss_pred cCCCChHHHHHHHcCCChhhhhhhhccccchHHhhcc
Q 047191 7 INALPDSVLCHILSYLPTKNVVATSILARRWKLVWTS 43 (341)
Q Consensus 7 is~LPd~iL~~Ils~Lp~~~~~~~s~vskrWr~lw~~ 43 (341)
+++||+|++.+|+++|+.+|.++.+.|||+|+++...
T Consensus 3 ~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~ 39 (48)
T PF00646_consen 3 LSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDS 39 (48)
T ss_dssp HHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTT
T ss_pred HHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcC
Confidence 5789999999999999999999999999999988654
No 5
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.29 E-value=4.7e-07 Score=55.37 Aligned_cols=33 Identities=39% Similarity=0.734 Sum_probs=31.3
Q ss_pred CChHHHHHHHcCCChhhhhhhhccccchHHhhc
Q 047191 10 LPDSVLCHILSYLPTKNVVATSILARRWKLVWT 42 (341)
Q Consensus 10 LPd~iL~~Ils~Lp~~~~~~~s~vskrWr~lw~ 42 (341)
||+|++.+|+++|+.+|..+++.|||+|+.+..
T Consensus 1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~ 33 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLID 33 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Confidence 799999999999999999999999999998764
No 6
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.14 E-value=1.2e-07 Score=85.73 Aligned_cols=199 Identities=19% Similarity=0.164 Sum_probs=135.8
Q ss_pred cCcceEEEEeeeeeeccCC---CcccCCchhhhhhhccC---CCcchHHHHHhcCCccceeEEeee----ecCCCCceeE
Q 047191 123 SPSVEVLKLMSDFLLKVPA---GGTCFPNVKILTMQLES---PDNILTEKLFCSCPSLEELSIQAY----LNDEGPTTKF 192 (341)
Q Consensus 123 ~~~L~~L~L~~~~~l~~~~---~~~~~~~L~~L~~~L~~---~~~~~l~~ll~~cp~Le~L~L~~c----~~~~~~~~~l 192 (341)
...|+...| .++....++ ....||+++.| +|.. .....+.+++...|.||.|+|+.- .... ..
T Consensus 120 ~kkL~~IsL-dn~~V~~~~~~~~~k~~~~v~~L--dLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s----~~ 192 (505)
T KOG3207|consen 120 LKKLREISL-DNYRVEDAGIEEYSKILPNVRDL--DLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISS----NT 192 (505)
T ss_pred HHhhhheee-cCccccccchhhhhhhCCcceee--cchhhhHHhHHHHHHHHHhcccchhcccccccccCCccc----cc
Confidence 356777888 777776553 34569999999 9999 777899999999999999999873 2222 23
Q ss_pred EEeCCCcceEEEeeecCccccccCceeEEEecCCceEEEeeccccC---ceeecCCCCeeEEEEEEEeCccccCCCccch
Q 047191 193 VISSSTLKQCTLWVETEGEMFTQAEYKVRITAPSLERLHIMSDIFG---KFVVHDLNSLTDVILDIVYGEWSRVDPNRSI 269 (341)
Q Consensus 193 ~i~~~sL~~L~i~~c~~~~~~~~~~~~~~~~~p~L~~l~~~~~~~~---~~~~~~~~~L~~~~l~~~~~~~~~~~~~~~~ 269 (341)
.-..++||.|++..| ++.+.....+....|+|+.|.+.+.... .........|+++++.-. ....|+ ..
T Consensus 193 ~~~l~~lK~L~l~~C---Gls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N--~li~~~---~~ 264 (505)
T KOG3207|consen 193 TLLLSHLKQLVLNSC---GLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNN--NLIDFD---QG 264 (505)
T ss_pred hhhhhhhheEEeccC---CCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCC--cccccc---cc
Confidence 446788999999994 6555567788888999999999876321 122334445666655321 111111 03
Q ss_pred HHhhcCCCceEEEEecchhhhccccccC---CCCCCCcccEEEEEEc-CCChhHHHHHHhcCCCCCcEEEee
Q 047191 270 QLLQQLNNTTSLTVSYGVLCALDHAYHK---WFPALSYLQHLEVAVG-AIGWAVLPVILSSSVHLQSLVLRK 337 (341)
Q Consensus 270 ~~l~~~~~l~~L~l~~~~~~~~~~~~~~---~~~~f~~L~~L~l~~~-~~~~~~l~~ll~~cp~L~~L~l~~ 337 (341)
.....++++..|.++.+++.-+..++++ ..-.|+.|+.|.+..+ -.+|..+-+ ++..++|+.|.+..
T Consensus 265 ~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~-l~~l~nlk~l~~~~ 335 (505)
T KOG3207|consen 265 YKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNH-LRTLENLKHLRITL 335 (505)
T ss_pred cccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccch-hhccchhhhhhccc
Confidence 4566889999999998887655433331 2237899999999987 335665544 55667777776543
No 7
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=98.02 E-value=4.6e-06 Score=87.21 Aligned_cols=210 Identities=19% Similarity=0.095 Sum_probs=99.1
Q ss_pred ccccc-ccCcceEEEEeeeeeeccCCCcccCCchhhhhhhccC--CCcchHHHHHhcCCccceeEEeeeecCCCCceeEE
Q 047191 117 QIELY-ASPSVEVLKLMSDFLLKVPAGGTCFPNVKILTMQLES--PDNILTEKLFCSCPSLEELSIQAYLNDEGPTTKFV 193 (341)
Q Consensus 117 p~~~~-~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~~~L~~--~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~l~ 193 (341)
|..++ .+.+|++|+| ++..+........+++|++| +|.+ ++ ..+..-+.++++|+.|++.++.-.+.. |.--
T Consensus 110 p~~~~~~l~~L~~L~L-s~n~l~~~~p~~~l~~L~~L--~Ls~n~~~-~~~p~~~~~l~~L~~L~L~~n~l~~~~-p~~~ 184 (968)
T PLN00113 110 PDDIFTTSSSLRYLNL-SNNNFTGSIPRGSIPNLETL--DLSNNMLS-GEIPNDIGSFSSLKVLDLGGNVLVGKI-PNSL 184 (968)
T ss_pred ChHHhccCCCCCEEEC-cCCccccccCccccCCCCEE--ECcCCccc-ccCChHHhcCCCCCEEECccCcccccC-Chhh
Confidence 55555 6788888888 65555322123457788888 7777 32 223333667788888888776432111 0111
Q ss_pred EeCCCcceEEEeeecCccccccCceeEEEecCCceEEEeeccccCc---eeecCCCCeeEEEEEEEeCcccc---CCC--
Q 047191 194 ISSSTLKQCTLWVETEGEMFTQAEYKVRITAPSLERLHIMSDIFGK---FVVHDLNSLTDVILDIVYGEWSR---VDP-- 265 (341)
Q Consensus 194 i~~~sL~~L~i~~c~~~~~~~~~~~~~~~~~p~L~~l~~~~~~~~~---~~~~~~~~L~~~~l~~~~~~~~~---~~~-- 265 (341)
-..++|+.|++.+|.-.+. .....-..++|++|.+.+..... ..+.++++|+.+++......... +..
T Consensus 185 ~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~ 260 (968)
T PLN00113 185 TNLTSLEFLTLASNQLVGQ----IPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLK 260 (968)
T ss_pred hhCcCCCeeeccCCCCcCc----CChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCC
Confidence 2345677777766321110 00011124455555555433211 12344455555444321110000 000
Q ss_pred ---------c---cc-hHHhhcCCCceEEEEecchhhhccccccCCCCCCCcccEEEEEEcCCChhHHHHHHhcCCCCCc
Q 047191 266 ---------N---RS-IQLLQQLNNTTSLTVSYGVLCALDHAYHKWFPALSYLQHLEVAVGAIGWAVLPVILSSSVHLQS 332 (341)
Q Consensus 266 ---------~---~~-~~~l~~~~~l~~L~l~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~~~~~l~~ll~~cp~L~~ 332 (341)
. .. ...+..+++++.|.++.+.+... ....+..+++|+.|++..+... ..+...+..+|+|+.
T Consensus 261 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~---~p~~~~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~ 336 (968)
T PLN00113 261 NLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGE---IPELVIQLQNLEILHLFSNNFT-GKIPVALTSLPRLQV 336 (968)
T ss_pred CCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccC---CChhHcCCCCCcEEECCCCccC-CcCChhHhcCCCCCE
Confidence 0 00 12233445555555554432211 0111224567777777665111 122344667788888
Q ss_pred EEEeeee
Q 047191 333 LVLRKVI 339 (341)
Q Consensus 333 L~l~~~~ 339 (341)
|.+.+-.
T Consensus 337 L~L~~n~ 343 (968)
T PLN00113 337 LQLWSNK 343 (968)
T ss_pred EECcCCC
Confidence 8886643
No 8
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.87 E-value=6.7e-06 Score=72.73 Aligned_cols=173 Identities=17% Similarity=0.096 Sum_probs=99.8
Q ss_pred cCCchhhhhhhccC--CCc---chHHHHHhcCCccceeEEeeeecCCCCceeEEEeCCCcceEEEeeecCccccccCcee
Q 047191 145 CFPNVKILTMQLES--PDN---ILTEKLFCSCPSLEELSIQAYLNDEGPTTKFVISSSTLKQCTLWVETEGEMFTQAEYK 219 (341)
Q Consensus 145 ~~~~L~~L~~~L~~--~~~---~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~l~i~~~sL~~L~i~~c~~~~~~~~~~~~ 219 (341)
.+|+|++| +|++ +++ ..+..++++|..||+|.|.+|.-.... . ..-+.-|..|. ...
T Consensus 90 ~~~~L~~l--dLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~a--g-~~l~~al~~l~-------------~~k 151 (382)
T KOG1909|consen 90 GCPKLQKL--DLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEA--G-GRLGRALFELA-------------VNK 151 (382)
T ss_pred cCCceeEe--eccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhH--H-HHHHHHHHHHH-------------HHh
Confidence 34566666 6666 333 456777999999999999999532100 0 00000011111 122
Q ss_pred EEEecCCceEEEeeccccCce-------eecCCCCeeEEEEEEEeCccccCCCccc-hHHhhcCCCceEEEEecchhhhc
Q 047191 220 VRITAPSLERLHIMSDIFGKF-------VVHDLNSLTDVILDIVYGEWSRVDPNRS-IQLLQQLNNTTSLTVSYGVLCAL 291 (341)
Q Consensus 220 ~~~~~p~L~~l~~~~~~~~~~-------~~~~~~~L~~~~l~~~~~~~~~~~~~~~-~~~l~~~~~l~~L~l~~~~~~~~ 291 (341)
..-+.|.|+.|........+. .+...|.|+++.+.-..... +...- ..-+..+++++.|.+..+++..-
T Consensus 152 k~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~---eG~~al~eal~~~~~LevLdl~DNtft~e 228 (382)
T KOG1909|consen 152 KAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRP---EGVTALAEALEHCPHLEVLDLRDNTFTLE 228 (382)
T ss_pred ccCCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccC---chhHHHHHHHHhCCcceeeecccchhhhH
Confidence 233466677776653322211 25556777776654221111 11111 55678899999999999887543
Q ss_pred cc-cccCCCCCCCcccEEEEEEc---CCChh-HHHHHHhcCCCCCcEEEeee
Q 047191 292 DH-AYHKWFPALSYLQHLEVAVG---AIGWA-VLPVILSSSVHLQSLVLRKV 338 (341)
Q Consensus 292 ~~-~~~~~~~~f~~L~~L~l~~~---~~~~~-~l~~ll~~cp~L~~L~l~~~ 338 (341)
.. .-.+.+|.+++|++|++.+| ..+.. ....+-+..|+|+.|.+.+=
T Consensus 229 gs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gN 280 (382)
T KOG1909|consen 229 GSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGN 280 (382)
T ss_pred HHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcc
Confidence 21 11345678999999999999 33333 34446666799999987653
No 9
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=97.82 E-value=1.5e-05 Score=83.43 Aligned_cols=17 Identities=29% Similarity=0.215 Sum_probs=9.5
Q ss_pred HhhcCCCceEEEEecch
Q 047191 271 LLQQLNNTTSLTVSYGV 287 (341)
Q Consensus 271 ~l~~~~~l~~L~l~~~~ 287 (341)
.+..+++++.|.++.+.
T Consensus 303 ~~~~l~~L~~L~l~~n~ 319 (968)
T PLN00113 303 LVIQLQNLEILHLFSNN 319 (968)
T ss_pred hHcCCCCCcEEECCCCc
Confidence 34455666666665543
No 10
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.75 E-value=2.5e-05 Score=82.86 Aligned_cols=104 Identities=13% Similarity=0.080 Sum_probs=57.6
Q ss_pred ccCcceEEEEeeeeeecc-CCCcccCCchhhhhhhccC-CCcchHHHHHhcCCccceeEEeeeecCCCCceeEEEeCCCc
Q 047191 122 ASPSVEVLKLMSDFLLKV-PAGGTCFPNVKILTMQLES-PDNILTEKLFCSCPSLEELSIQAYLNDEGPTTKFVISSSTL 199 (341)
Q Consensus 122 ~~~~L~~L~L~~~~~l~~-~~~~~~~~~L~~L~~~L~~-~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~l~i~~~sL 199 (341)
...+|+.|++ .++.+.. +.....+++|+.| +|.+ -.-..+.. ++.+++||.|.|.+|.....- |.---..++|
T Consensus 609 ~~~~L~~L~L-~~s~l~~L~~~~~~l~~Lk~L--~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~l-p~si~~L~~L 683 (1153)
T PLN03210 609 RPENLVKLQM-QGSKLEKLWDGVHSLTGLRNI--DLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVEL-PSSIQYLNKL 683 (1153)
T ss_pred CccCCcEEEC-cCccccccccccccCCCCCEE--ECCCCCCcCcCCc-cccCCcccEEEecCCCCcccc-chhhhccCCC
Confidence 4578888888 6665543 3334567888888 8876 11112222 566888888888888653211 0111133567
Q ss_pred ceEEEeeecCccccccCceeEEEecCCceEEEeecc
Q 047191 200 KQCTLWVETEGEMFTQAEYKVRITAPSLERLHIMSD 235 (341)
Q Consensus 200 ~~L~i~~c~~~~~~~~~~~~~~~~~p~L~~l~~~~~ 235 (341)
+.|++.+|..-.. -. ..+..++|++|.++|+
T Consensus 684 ~~L~L~~c~~L~~---Lp--~~i~l~sL~~L~Lsgc 714 (1153)
T PLN03210 684 EDLDMSRCENLEI---LP--TGINLKSLYRLNLSGC 714 (1153)
T ss_pred CEEeCCCCCCcCc---cC--CcCCCCCCCEEeCCCC
Confidence 7777777532211 00 1124556666666654
No 11
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.62 E-value=4.9e-06 Score=75.20 Aligned_cols=204 Identities=16% Similarity=0.048 Sum_probs=102.6
Q ss_pred cCcceEEEEeeeee-eccC---CCcccCCchhhhhhhccC---CCcchHHHHHhcCCccceeEEeeeecCCCCc------
Q 047191 123 SPSVEVLKLMSDFL-LKVP---AGGTCFPNVKILTMQLES---PDNILTEKLFCSCPSLEELSIQAYLNDEGPT------ 189 (341)
Q Consensus 123 ~~~L~~L~L~~~~~-l~~~---~~~~~~~~L~~L~~~L~~---~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~------ 189 (341)
|++|+++.| ..|. +... ..+.+||+|+.| ++.| +++++++.+..+|..|+.+.+.+|...+...
T Consensus 189 C~~l~~l~L-~~c~~iT~~~Lk~la~gC~kL~~l--NlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~ 265 (483)
T KOG4341|consen 189 CRKLRHLNL-HSCSSITDVSLKYLAEGCRKLKYL--NLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAA 265 (483)
T ss_pred cchhhhhhh-cccchhHHHHHHHHHHhhhhHHHh--hhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhc
Confidence 566666666 4432 2111 023467788888 7777 7777777777778777777777774422110
Q ss_pred ---eeEEE------------------eCCCcceEEEeeecCccccccCceeEEEecCCceEEEeeccccC-c--e--eec
Q 047191 190 ---TKFVI------------------SSSTLKQCTLWVETEGEMFTQAEYKVRITAPSLERLHIMSDIFG-K--F--VVH 243 (341)
Q Consensus 190 ---~~l~i------------------~~~sL~~L~i~~c~~~~~~~~~~~~~~~~~p~L~~l~~~~~~~~-~--~--~~~ 243 (341)
..+.+ .+..|+.|...+|.+..+ .....+.-.+++|..+.+.++..- . + .-.
T Consensus 266 ~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d--~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~r 343 (483)
T KOG4341|consen 266 YCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITD--EVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGR 343 (483)
T ss_pred cChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCch--HHHHHHhcCCCceEEEeccccchhhhhhhhhhhc
Confidence 00011 134455555555433222 223344445677777777765421 0 1 123
Q ss_pred CCCCeeEEEEEEEeCccccCCCccc-hHHhhcCCCceEEEEecchhhhccc--cccCCCC-CCCcccEEEEEEcCCChhH
Q 047191 244 DLNSLTDVILDIVYGEWSRVDPNRS-IQLLQQLNNTTSLTVSYGVLCALDH--AYHKWFP-ALSYLQHLEVAVGAIGWAV 319 (341)
Q Consensus 244 ~~~~L~~~~l~~~~~~~~~~~~~~~-~~~l~~~~~l~~L~l~~~~~~~~~~--~~~~~~~-~f~~L~~L~l~~~~~~~~~ 319 (341)
+.++|++..+.-+... ++. . ..+-.+++.++.|.++-.. .+.+. ....... ....|..|++..+....+.
T Consensus 344 n~~~Le~l~~e~~~~~---~d~--tL~sls~~C~~lr~lslshce-~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~ 417 (483)
T KOG4341|consen 344 NCPHLERLDLEECGLI---TDG--TLASLSRNCPRLRVLSLSHCE-LITDEGIRHLSSSSCSLEGLEVLELDNCPLITDA 417 (483)
T ss_pred CChhhhhhccccccee---hhh--hHhhhccCCchhccCChhhhh-hhhhhhhhhhhhccccccccceeeecCCCCchHH
Confidence 4455555443211110 000 1 4555677777877776211 11100 0000000 2335666666666334445
Q ss_pred HHHHHhcCCCCCcEEEee
Q 047191 320 LPVILSSSVHLQSLVLRK 337 (341)
Q Consensus 320 l~~ll~~cp~L~~L~l~~ 337 (341)
....++.||+||.+++-+
T Consensus 418 ~Le~l~~c~~Leri~l~~ 435 (483)
T KOG4341|consen 418 TLEHLSICRNLERIELID 435 (483)
T ss_pred HHHHHhhCcccceeeeec
Confidence 566677888888766544
No 12
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=97.61 E-value=5.4e-06 Score=75.06 Aligned_cols=213 Identities=20% Similarity=0.073 Sum_probs=115.2
Q ss_pred ccccCcceEEEEeeeeeecc-C-------CCcccCCchhhhhhhccC--CC---cchHHHHHhcCCccceeEEeeeecCC
Q 047191 120 LYASPSVEVLKLMSDFLLKV-P-------AGGTCFPNVKILTMQLES--PD---NILTEKLFCSCPSLEELSIQAYLNDE 186 (341)
Q Consensus 120 ~~~~~~L~~L~L~~~~~l~~-~-------~~~~~~~~L~~L~~~L~~--~~---~~~l~~ll~~cp~Le~L~L~~c~~~~ 186 (341)
+...++|++|.+ ....+.. + .....+++|+.| .+.+ .+ ...+..+..+ |.|+.|++.+|....
T Consensus 47 l~~~~~l~~l~l-~~~~~~~~~~~~~~~~~~l~~~~~L~~L--~l~~~~~~~~~~~~~~~l~~~-~~L~~L~ls~~~~~~ 122 (319)
T cd00116 47 LRPQPSLKELCL-SLNETGRIPRGLQSLLQGLTKGCGLQEL--DLSDNALGPDGCGVLESLLRS-SSLQELKLNNNGLGD 122 (319)
T ss_pred HhhCCCceEEec-cccccCCcchHHHHHHHHHHhcCceeEE--EccCCCCChhHHHHHHHHhcc-CcccEEEeeCCccch
Confidence 344667888888 6544331 1 012236788888 8877 33 2334444445 679999998885431
Q ss_pred CCce----eEEEeCCCcceEEEeeecCccccccCceeEEEecCCceEEEeeccccCce-------eecCCCCeeEEEEEE
Q 047191 187 GPTT----KFVISSSTLKQCTLWVETEGEMFTQAEYKVRITAPSLERLHIMSDIFGKF-------VVHDLNSLTDVILDI 255 (341)
Q Consensus 187 ~~~~----~l~i~~~sL~~L~i~~c~~~~~~~~~~~~~~~~~p~L~~l~~~~~~~~~~-------~~~~~~~L~~~~l~~ 255 (341)
...+ .+.-..++|+.|.+.+|.-...............++|++|++.+...... .+...++|+.+++.-
T Consensus 123 ~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~ 202 (319)
T cd00116 123 RGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNN 202 (319)
T ss_pred HHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccC
Confidence 0100 01111268899998885321100000011112346788888887654311 123445788777653
Q ss_pred EeCccccCCCccc-hHHhhcCCCceEEEEecchhhhccccc-cCCCC-CCCcccEEEEEEcCC---ChhHHHHHHhcCCC
Q 047191 256 VYGEWSRVDPNRS-IQLLQQLNNTTSLTVSYGVLCALDHAY-HKWFP-ALSYLQHLEVAVGAI---GWAVLPVILSSSVH 329 (341)
Q Consensus 256 ~~~~~~~~~~~~~-~~~l~~~~~l~~L~l~~~~~~~~~~~~-~~~~~-~f~~L~~L~l~~~~~---~~~~l~~ll~~cp~ 329 (341)
......... . ...+..+++++.|.++.+.+....... ...++ ..++|++|++..+.. +...+...+..+|+
T Consensus 203 n~i~~~~~~---~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~ 279 (319)
T cd00116 203 NGLTDEGAS---ALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKES 279 (319)
T ss_pred CccChHHHH---HHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCC
Confidence 321110000 1 445567788999999876543211000 11111 246899999988833 34455666777788
Q ss_pred CCcEEEeeee
Q 047191 330 LQSLVLRKVI 339 (341)
Q Consensus 330 L~~L~l~~~~ 339 (341)
|+.+++.+-.
T Consensus 280 L~~l~l~~N~ 289 (319)
T cd00116 280 LLELDLRGNK 289 (319)
T ss_pred ccEEECCCCC
Confidence 8888887643
No 13
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=97.60 E-value=6.9e-06 Score=77.33 Aligned_cols=33 Identities=27% Similarity=0.329 Sum_probs=17.8
Q ss_pred cCcceEEEEeeeeee-ccCC-CcccCCchhhhhhhccC
Q 047191 123 SPSVEVLKLMSDFLL-KVPA-GGTCFPNVKILTMQLES 158 (341)
Q Consensus 123 ~~~L~~L~L~~~~~l-~~~~-~~~~~~~L~~L~~~L~~ 158 (341)
..+|..|+| .+-.+ ..|+ .+..+|+|+.| .|..
T Consensus 196 lnsL~tlkL-srNrittLp~r~Fk~L~~L~~L--dLnr 230 (873)
T KOG4194|consen 196 LNSLLTLKL-SRNRITTLPQRSFKRLPKLESL--DLNR 230 (873)
T ss_pred cchheeeec-ccCcccccCHHHhhhcchhhhh--hccc
Confidence 457777777 43333 2232 23446667777 6655
No 14
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.50 E-value=8.8e-05 Score=78.73 Aligned_cols=78 Identities=15% Similarity=0.129 Sum_probs=36.0
Q ss_pred CcceEEEEeeeeeeccCCCcccCCchhhhhhhccCCCcchHHHHHhcCCccceeEEeeeecCC-CCceeEEEeCCCcceE
Q 047191 124 PSVEVLKLMSDFLLKVPAGGTCFPNVKILTMQLESPDNILTEKLFCSCPSLEELSIQAYLNDE-GPTTKFVISSSTLKQC 202 (341)
Q Consensus 124 ~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~~~L~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~-~~~~~l~i~~~sL~~L 202 (341)
.+|+.|.+ .+..+...|....+.+|+.| .|.+-.-..+..-+..+++|+.|+|.+|.... .+ .+ -..++|+.|
T Consensus 589 ~~Lr~L~~-~~~~l~~lP~~f~~~~L~~L--~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip--~l-s~l~~Le~L 662 (1153)
T PLN03210 589 PKLRLLRW-DKYPLRCMPSNFRPENLVKL--QMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIP--DL-SMATNLETL 662 (1153)
T ss_pred cccEEEEe-cCCCCCCCCCcCCccCCcEE--ECcCccccccccccccCCCCCEEECCCCCCcCcCC--cc-ccCCcccEE
Confidence 34666666 54444433344445566666 55551111111113456666666666654321 11 11 123556666
Q ss_pred EEeee
Q 047191 203 TLWVE 207 (341)
Q Consensus 203 ~i~~c 207 (341)
.+.+|
T Consensus 663 ~L~~c 667 (1153)
T PLN03210 663 KLSDC 667 (1153)
T ss_pred EecCC
Confidence 66664
No 15
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=97.40 E-value=2.9e-05 Score=70.26 Aligned_cols=211 Identities=17% Similarity=0.069 Sum_probs=121.9
Q ss_pred cCcceEEEEeeeeeeccC-----C-CcccCCchhhhhhhccC--CC--cchH---HHHHhcCCccceeEEeeeecCCCCc
Q 047191 123 SPSVEVLKLMSDFLLKVP-----A-GGTCFPNVKILTMQLES--PD--NILT---EKLFCSCPSLEELSIQAYLNDEGPT 189 (341)
Q Consensus 123 ~~~L~~L~L~~~~~l~~~-----~-~~~~~~~L~~L~~~L~~--~~--~~~l---~~ll~~cp~Le~L~L~~c~~~~~~~ 189 (341)
...|+.|.+ .++.+... + ....+++|++| .+.. ++ ...+ ...+..++.|+.|.+.+|.......
T Consensus 22 l~~L~~l~l-~~~~l~~~~~~~i~~~l~~~~~l~~l--~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 98 (319)
T cd00116 22 LLCLQVLRL-EGNTLGEEAAKALASALRPQPSLKEL--CLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGC 98 (319)
T ss_pred HhhccEEee-cCCCCcHHHHHHHHHHHhhCCCceEE--eccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHH
Confidence 455899999 87776221 1 22346779999 8877 44 3333 3446678899999999986531110
Q ss_pred e---eEEEeCCCcceEEEeeecCccccccCc-eeEEEecCCceEEEeeccccCc-----e--eecCCCCeeEEEEEEEeC
Q 047191 190 T---KFVISSSTLKQCTLWVETEGEMFTQAE-YKVRITAPSLERLHIMSDIFGK-----F--VVHDLNSLTDVILDIVYG 258 (341)
Q Consensus 190 ~---~l~i~~~sL~~L~i~~c~~~~~~~~~~-~~~~~~~p~L~~l~~~~~~~~~-----~--~~~~~~~L~~~~l~~~~~ 258 (341)
+ .+.-. ++|+.|++.+|.-........ ..+....|+|+.+.+.++.... + .+..+++|+.+.+....-
T Consensus 99 ~~~~~l~~~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l 177 (319)
T cd00116 99 GVLESLLRS-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGI 177 (319)
T ss_pred HHHHHHhcc-CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCC
Confidence 0 11112 569999999853211000000 0111113899999999876441 1 244556788776643211
Q ss_pred ccccCCCccc-hHHhhcCCCceEEEEecchhhhccccc-cCCCCCCCcccEEEEEEcCCChhHHHHHHhcC----CCCCc
Q 047191 259 EWSRVDPNRS-IQLLQQLNNTTSLTVSYGVLCALDHAY-HKWFPALSYLQHLEVAVGAIGWAVLPVILSSS----VHLQS 332 (341)
Q Consensus 259 ~~~~~~~~~~-~~~l~~~~~l~~L~l~~~~~~~~~~~~-~~~~~~f~~L~~L~l~~~~~~~~~l~~ll~~c----p~L~~ 332 (341)
...... . ...+...++++.|.++.+.+.-..... ...++.+++|++|++..+..+...+..+.+.+ +.|+.
T Consensus 178 ~~~~~~---~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~ 254 (319)
T cd00116 178 GDAGIR---ALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLT 254 (319)
T ss_pred chHHHH---HHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceE
Confidence 110000 0 223445569999999877643211111 12345678999999998744444555555554 79999
Q ss_pred EEEeeeee
Q 047191 333 LVLRKVII 340 (341)
Q Consensus 333 L~l~~~~~ 340 (341)
|.+.+-.|
T Consensus 255 L~l~~n~i 262 (319)
T cd00116 255 LSLSCNDI 262 (319)
T ss_pred EEccCCCC
Confidence 99987544
No 16
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=97.18 E-value=0.00017 Score=68.19 Aligned_cols=207 Identities=17% Similarity=0.151 Sum_probs=101.3
Q ss_pred ccccCcceEEEEeeeeeeccCCCccc-CCchhhhhhhccC--CCcchHHHHHhcCCccceeEEeeeecCCCCceeEEEeC
Q 047191 120 LYASPSVEVLKLMSDFLLKVPAGGTC-FPNVKILTMQLES--PDNILTEKLFCSCPSLEELSIQAYLNDEGPTTKFVISS 196 (341)
Q Consensus 120 ~~~~~~L~~L~L~~~~~l~~~~~~~~-~~~L~~L~~~L~~--~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~l~i~~ 196 (341)
++..++|+.+++ ..-.+...|...+ ..+|+.| +|.+ ++.-.-++ ++.-|.||.|+|+.-.-..++. .-.-..
T Consensus 98 f~nl~nLq~v~l-~~N~Lt~IP~f~~~sghl~~L--~L~~N~I~sv~se~-L~~l~alrslDLSrN~is~i~~-~sfp~~ 172 (873)
T KOG4194|consen 98 FYNLPNLQEVNL-NKNELTRIPRFGHESGHLEKL--DLRHNLISSVTSEE-LSALPALRSLDLSRNLISEIPK-PSFPAK 172 (873)
T ss_pred HhcCCcceeeee-ccchhhhcccccccccceeEE--eeeccccccccHHH-HHhHhhhhhhhhhhchhhcccC-CCCCCC
Confidence 456788888888 6555554445544 3458888 8888 44433333 5557788888887643222120 011123
Q ss_pred CCcceEEEeeecCccccccCceeEEEecCCceEEEeeccccC---ceeecCCCCeeEEEEEEEeCccc---cC-------
Q 047191 197 STLKQCTLWVETEGEMFTQAEYKVRITAPSLERLHIMSDIFG---KFVVHDLNSLTDVILDIVYGEWS---RV------- 263 (341)
Q Consensus 197 ~sL~~L~i~~c~~~~~~~~~~~~~~~~~p~L~~l~~~~~~~~---~~~~~~~~~L~~~~l~~~~~~~~---~~------- 263 (341)
..++.|++... ..+. -....+. ...+|..|+++..... ...+.++|+|+.++++....... -|
T Consensus 173 ~ni~~L~La~N-~It~--l~~~~F~-~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~ 248 (873)
T KOG4194|consen 173 VNIKKLNLASN-RITT--LETGHFD-SLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQ 248 (873)
T ss_pred CCceEEeeccc-cccc--ccccccc-ccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhh
Confidence 45777777662 1111 0001111 1125666666544332 12455666666655543221110 00
Q ss_pred ----CCcc--c--hHHhhcCCCceEEEEecchhhhccccccCCCCCCCcccEEEEEEcCCChhHHHHHHhcCCCCCcEEE
Q 047191 264 ----DPNR--S--IQLLQQLNNTTSLTVSYGVLCALDHAYHKWFPALSYLQHLEVAVGAIGWAVLPVILSSSVHLQSLVL 335 (341)
Q Consensus 264 ----~~~~--~--~~~l~~~~~l~~L~l~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~~~~~l~~ll~~cp~L~~L~l 335 (341)
..+. . ++.+-++.++++|.|..+.++.+. -.++..+..|++|+++++.+.--. ..==+-||+|+.|++
T Consensus 249 nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn---~g~lfgLt~L~~L~lS~NaI~rih-~d~WsftqkL~~LdL 324 (873)
T KOG4194|consen 249 NLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVN---EGWLFGLTSLEQLDLSYNAIQRIH-IDSWSFTQKLKELDL 324 (873)
T ss_pred hhhhhhcCcccccCcceeeecccceeecccchhhhhh---cccccccchhhhhccchhhhheee-cchhhhcccceeEec
Confidence 0000 0 444445566666666655544321 123334556777777765110000 001235899999998
Q ss_pred eeee
Q 047191 336 RKVI 339 (341)
Q Consensus 336 ~~~~ 339 (341)
+.=.
T Consensus 325 s~N~ 328 (873)
T KOG4194|consen 325 SSNR 328 (873)
T ss_pred cccc
Confidence 7643
No 17
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.16 E-value=1.8e-05 Score=75.76 Aligned_cols=108 Identities=23% Similarity=0.206 Sum_probs=73.1
Q ss_pred cccCcceEEEEeee-eee-cc-----CCCcccCCchhhhhhhccC---CCcchHHHHHhcCCccceeEEeeeecC---CC
Q 047191 121 YASPSVEVLKLMSD-FLL-KV-----PAGGTCFPNVKILTMQLES---PDNILTEKLFCSCPSLEELSIQAYLND---EG 187 (341)
Q Consensus 121 ~~~~~L~~L~L~~~-~~l-~~-----~~~~~~~~~L~~L~~~L~~---~~~~~l~~ll~~cp~Le~L~L~~c~~~---~~ 187 (341)
..|+.|+.|++ +. +.. .. ......+++|+.| .+.. +++.++..+...||.||.|.+.+|... ++
T Consensus 211 ~~~~~L~~L~l-~~~~~~~~~~~~~~~~~~~~~~~L~~l--~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl 287 (482)
T KOG1947|consen 211 LKCPNLEELDL-SGCCLLITLSPLLLLLLLSICRKLKSL--DLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGL 287 (482)
T ss_pred hhCchhheecc-cCcccccccchhHhhhhhhhcCCcCcc--chhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHH
Confidence 44889999999 64 221 11 1123346899999 8888 799999999999999999998888742 22
Q ss_pred CceeEEEeCCCcceEEEeeecCccccccCceeEEEecCCceEEEeecc
Q 047191 188 PTTKFVISSSTLKQCTLWVETEGEMFTQAEYKVRITAPSLERLHIMSD 235 (341)
Q Consensus 188 ~~~~l~i~~~sL~~L~i~~c~~~~~~~~~~~~~~~~~p~L~~l~~~~~ 235 (341)
. .+.-.+++|++|.+..|....+ .....+...+|+|+.|.+.+.
T Consensus 288 ~--~i~~~~~~L~~L~l~~c~~~~d--~~l~~~~~~c~~l~~l~~~~~ 331 (482)
T KOG1947|consen 288 V--SIAERCPSLRELDLSGCHGLTD--SGLEALLKNCPNLRELKLLSL 331 (482)
T ss_pred H--HHHHhcCcccEEeeecCccchH--HHHHHHHHhCcchhhhhhhhc
Confidence 2 3444678899999998754432 223333445777777665543
No 18
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.09 E-value=0.00011 Score=64.10 Aligned_cols=111 Identities=18% Similarity=0.166 Sum_probs=78.2
Q ss_pred cccccCcceEEEEeeeeeeccC--CCcc-c-CCchhhhhhhccC----CCcchHHHHHhcCCccceeEEeeeecCCCCce
Q 047191 119 ELYASPSVEVLKLMSDFLLKVP--AGGT-C-FPNVKILTMQLES----PDNILTEKLFCSCPSLEELSIQAYLNDEGPTT 190 (341)
Q Consensus 119 ~~~~~~~L~~L~L~~~~~l~~~--~~~~-~-~~~L~~L~~~L~~----~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~ 190 (341)
.+.+|..|..|+| ++|.+..+ ...+ + -++|++| +|.+ ....++..+...||+|-+|+|.+|....-.
T Consensus 255 l~~scs~L~~LNl-sWc~l~~~~Vtv~V~hise~l~~L--NlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~-- 329 (419)
T KOG2120|consen 255 LLSSCSRLDELNL-SWCFLFTEKVTVAVAHISETLTQL--NLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKND-- 329 (419)
T ss_pred HHHhhhhHhhcCc-hHhhccchhhhHHHhhhchhhhhh--hhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCch--
Confidence 3456999999999 77665322 1111 1 3899999 9998 778899999999999999999999653211
Q ss_pred eE--EEeCCCcceEEEeeecCccccccCceeEEE-ecCCceEEEeeccccC
Q 047191 191 KF--VISSSTLKQCTLWVETEGEMFTQAEYKVRI-TAPSLERLHIMSDIFG 238 (341)
Q Consensus 191 ~l--~i~~~sL~~L~i~~c~~~~~~~~~~~~~~~-~~p~L~~l~~~~~~~~ 238 (341)
.+ ....+.|+.|.++.||... +...+.+ ..|.|.+|+..|+..+
T Consensus 330 ~~~~~~kf~~L~~lSlsRCY~i~----p~~~~~l~s~psl~yLdv~g~vsd 376 (419)
T KOG2120|consen 330 CFQEFFKFNYLQHLSLSRCYDII----PETLLELNSKPSLVYLDVFGCVSD 376 (419)
T ss_pred HHHHHHhcchheeeehhhhcCCC----hHHeeeeccCcceEEEEeccccCc
Confidence 11 2255778999999875432 2333443 5788888888887654
No 19
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.92 E-value=0.00025 Score=67.97 Aligned_cols=37 Identities=19% Similarity=0.202 Sum_probs=26.8
Q ss_pred CCCcccEEEEEEc-CCChhHHHHHHhcCCCCCcEEEee
Q 047191 301 ALSYLQHLEVAVG-AIGWAVLPVILSSSVHLQSLVLRK 337 (341)
Q Consensus 301 ~f~~L~~L~l~~~-~~~~~~l~~ll~~cp~L~~L~l~~ 337 (341)
.+++|++|+|..+ ..+...+..+.++||+|++|.+.+
T Consensus 293 ~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~ 330 (482)
T KOG1947|consen 293 RCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLS 330 (482)
T ss_pred hcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhh
Confidence 4567888888877 556777777788888888766543
No 20
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=96.72 E-value=0.00038 Score=63.67 Aligned_cols=109 Identities=24% Similarity=0.090 Sum_probs=69.1
Q ss_pred cCcceEEEEeeeeeeccCCC---cccCCchhhhhhhccC--CCcchHHHHHhcCCccceeEEeeeecCCCCceeEEEeCC
Q 047191 123 SPSVEVLKLMSDFLLKVPAG---GTCFPNVKILTMQLES--PDNILTEKLFCSCPSLEELSIQAYLNDEGPTTKFVISSS 197 (341)
Q Consensus 123 ~~~L~~L~L~~~~~l~~~~~---~~~~~~L~~L~~~L~~--~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~l~i~~~ 197 (341)
.++|+.|+| +.-.+..+.+ ...++.||+| +|.. ++..+++.++.+||.|+.|.+.+-.+......... -..
T Consensus 171 Lp~Le~LNl-s~Nrl~~~~~s~~~~~l~~lK~L--~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~-i~~ 246 (505)
T KOG3207|consen 171 LPSLENLNL-SSNRLSNFISSNTTLLLSHLKQL--VLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTK-ILQ 246 (505)
T ss_pred cccchhccc-ccccccCCccccchhhhhhhheE--EeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhh-hhh
Confidence 577888888 6544443321 2257899999 9988 88999999999999999999987643211100111 234
Q ss_pred CcceEEEeeecCccccccCceeEEEecCCceEEEeeccccC
Q 047191 198 TLKQCTLWVETEGEMFTQAEYKVRITAPSLERLHIMSDIFG 238 (341)
Q Consensus 198 sL~~L~i~~c~~~~~~~~~~~~~~~~~p~L~~l~~~~~~~~ 238 (341)
+|++|++++..... .......-..|+|.-|.+..+...
T Consensus 247 ~L~~LdLs~N~li~---~~~~~~~~~l~~L~~Lnls~tgi~ 284 (505)
T KOG3207|consen 247 TLQELDLSNNNLID---FDQGYKVGTLPGLNQLNLSSTGIA 284 (505)
T ss_pred HHhhccccCCcccc---cccccccccccchhhhhccccCcc
Confidence 78888888832222 123344556777777777654433
No 21
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=96.59 E-value=0.00097 Score=54.70 Aligned_cols=65 Identities=17% Similarity=0.078 Sum_probs=32.4
Q ss_pred HhhcCCCceEEEEecchhhhccccccCCCCCCCcccEEEEEEc--CCChhHHHHHHhcCCCCCcEEEee
Q 047191 271 LLQQLNNTTSLTVSYGVLCALDHAYHKWFPALSYLQHLEVAVG--AIGWAVLPVILSSSVHLQSLVLRK 337 (341)
Q Consensus 271 ~l~~~~~l~~L~l~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~--~~~~~~l~~ll~~cp~L~~L~l~~ 337 (341)
+...+++++.|.++.+.+.-+. ....+..+++|+.|++..+ ......-..++..+|+|+.|+-..
T Consensus 83 l~~~lp~L~~L~L~~N~I~~l~--~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 83 LDKNLPNLQELYLSNNKISDLN--ELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp HHHH-TT--EEE-TTS---SCC--CCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred hHHhCCcCCEEECcCCcCCChH--HhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEE
Confidence 4457889999999887765432 1223336788999998877 222334456888899999887543
No 22
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=95.71 E-value=0.0015 Score=65.10 Aligned_cols=152 Identities=16% Similarity=0.127 Sum_probs=95.3
Q ss_pred CccceeEEeeeec---CCCCceeEEEeCCCcceEEEeeecCccccccCceeEEEecCCceEEEeeccccCce-eecCCCC
Q 047191 172 PSLEELSIQAYLN---DEGPTTKFVISSSTLKQCTLWVETEGEMFTQAEYKVRITAPSLERLHIMSDIFGKF-VVHDLNS 247 (341)
Q Consensus 172 p~Le~L~L~~c~~---~~~~~~~l~i~~~sL~~L~i~~c~~~~~~~~~~~~~~~~~p~L~~l~~~~~~~~~~-~~~~~~~ 247 (341)
.+|+.|++.+-.. .+.. .+.-..|+|++|.|.+ ..+.......+--+-|+|.+|+++|...... ...++.+
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~--kig~~LPsL~sL~i~~---~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~Lkn 196 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPK--KIGTMLPSLRSLVISG---RQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKN 196 (699)
T ss_pred HhhhhcCccccchhhccHHH--HHhhhCcccceEEecC---ceecchhHHHHhhccCccceeecCCCCccCcHHHhcccc
Confidence 5899999977422 1112 3444678999999988 2322222345556789999999999876653 4556666
Q ss_pred eeEEEEEEEeCccccCCCccchHHhhcCCCceEEEEecchh----hhcc-ccccCCCCCCCcccEEEEEEcCCChhHHHH
Q 047191 248 LTDVILDIVYGEWSRVDPNRSIQLLQQLNNTTSLTVSYGVL----CALD-HAYHKWFPALSYLQHLEVAVGAIGWAVLPV 322 (341)
Q Consensus 248 L~~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~L~l~~~~~----~~~~-~~~~~~~~~f~~L~~L~l~~~~~~~~~l~~ 322 (341)
|+.+.+.-. .|....+..-+-.+++++.|+++.... ..+. |..++ -.+|+|+.|+.+....+-+.+..
T Consensus 197 Lq~L~mrnL-----e~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~--~~LpeLrfLDcSgTdi~~~~le~ 269 (699)
T KOG3665|consen 197 LQVLSMRNL-----EFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECG--MVLPELRFLDCSGTDINEEILEE 269 (699)
T ss_pred HHHHhccCC-----CCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhc--ccCccccEEecCCcchhHHHHHH
Confidence 665544321 111111233445689999999985321 1221 22222 14778999998876677788888
Q ss_pred HHhcCCCCCcEEE
Q 047191 323 ILSSSVHLQSLVL 335 (341)
Q Consensus 323 ll~~cp~L~~L~l 335 (341)
+++.=|+|+.+-.
T Consensus 270 ll~sH~~L~~i~~ 282 (699)
T KOG3665|consen 270 LLNSHPNLQQIAA 282 (699)
T ss_pred HHHhCccHhhhhh
Confidence 8888899887653
No 23
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.53 E-value=0.0011 Score=57.29 Aligned_cols=98 Identities=17% Similarity=0.146 Sum_probs=59.9
Q ss_pred CceEEEeeccccCcee-ecCCCCeeEEEEEEEeCccccCCCccchHHhhcCCCceEEEEecchhhhcc-ccccCCCCCCC
Q 047191 226 SLERLHIMSDIFGKFV-VHDLNSLTDVILDIVYGEWSRVDPNRSIQLLQQLNNTTSLTVSYGVLCALD-HAYHKWFPALS 303 (341)
Q Consensus 226 ~L~~l~~~~~~~~~~~-~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~L~l~~~~~~~~~-~~~~~~~~~f~ 303 (341)
+.+.|.++|+....+. ...+|.|+-+.+.+..... ..-+..|++++.|.|.-+.+.-+. ...++ .+|
T Consensus 20 ~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIss--------L~pl~rCtrLkElYLRkN~I~sldEL~YLk---nlp 88 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISS--------LAPLQRCTRLKELYLRKNCIESLDELEYLK---NLP 88 (388)
T ss_pred HhhhhcccCCCccHHHHHHhcccceeEEeecccccc--------chhHHHHHHHHHHHHHhcccccHHHHHHHh---cCc
Confidence 3445555555554443 3455656655555433322 445667788888877766554432 12233 667
Q ss_pred cccEEEEEEc-C---CChhHHHHHHhcCCCCCcEE
Q 047191 304 YLQHLEVAVG-A---IGWAVLPVILSSSVHLQSLV 334 (341)
Q Consensus 304 ~L~~L~l~~~-~---~~~~~l~~ll~~cp~L~~L~ 334 (341)
+|+.|.|..+ . .+-+.-..+|+..|||++|+
T Consensus 89 sLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 89 SLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 8999999887 2 23445567899999999987
No 24
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=95.47 E-value=0.008 Score=60.05 Aligned_cols=132 Identities=18% Similarity=0.102 Sum_probs=65.1
Q ss_pred CcceEEEEeeeeee-ccCCC--cccCCchhhhhhhccC--CCcchHHHHHhcCCccceeEEeeeecCCCCceeEEEeCCC
Q 047191 124 PSVEVLKLMSDFLL-KVPAG--GTCFPNVKILTMQLES--PDNILTEKLFCSCPSLEELSIQAYLNDEGPTTKFVISSST 198 (341)
Q Consensus 124 ~~L~~L~L~~~~~l-~~~~~--~~~~~~L~~L~~~L~~--~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~l~i~~~s 198 (341)
.+|++|++.+.-.+ ..++. +.-||+|++| ++.+ ...+++..+..++|+|..|+++++.-..+. .| +
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL--~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~----GI--S- 192 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSL--VISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLS----GI--S- 192 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceE--EecCceecchhHHHHhhccCccceeecCCCCccCcH----HH--h-
Confidence 45666666222222 12221 2236777777 6666 555556666667777777776666432111 00 1
Q ss_pred cceEEEeeecCccccccCceeEEEecCCceEEEeeccccCc-e---eecCCCCeeEEEEEEEeCccccCCCccc-hHHhh
Q 047191 199 LKQCTLWVETEGEMFTQAEYKVRITAPSLERLHIMSDIFGK-F---VVHDLNSLTDVILDIVYGEWSRVDPNRS-IQLLQ 273 (341)
Q Consensus 199 L~~L~i~~c~~~~~~~~~~~~~~~~~p~L~~l~~~~~~~~~-~---~~~~~~~L~~~~l~~~~~~~~~~~~~~~-~~~l~ 273 (341)
..++|+.|...+-.... . .+-++.+|+.+++.-....... .-... ...-.
T Consensus 193 ------------------------~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~-~ii~qYlec~~ 247 (699)
T KOG3665|consen 193 ------------------------RLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDT-KIIEQYLECGM 247 (699)
T ss_pred ------------------------ccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccch-HHHHHHHHhcc
Confidence 24455555544333222 1 2334555666665432211111 00001 33345
Q ss_pred cCCCceEEEEecchhh
Q 047191 274 QLNNTTSLTVSYGVLC 289 (341)
Q Consensus 274 ~~~~l~~L~l~~~~~~ 289 (341)
.+|+++.|+.+++...
T Consensus 248 ~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 248 VLPELRFLDCSGTDIN 263 (699)
T ss_pred cCccccEEecCCcchh
Confidence 6899999999987653
No 25
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.42 E-value=0.0038 Score=54.70 Aligned_cols=195 Identities=16% Similarity=0.140 Sum_probs=115.1
Q ss_pred ceEEEEeeeeeeccCC---C-cccCCchhhhhhhccC---CCcchHHHHHhcCCccceeEEeeeec-CCCCceeEEEeCC
Q 047191 126 VEVLKLMSDFLLKVPA---G-GTCFPNVKILTMQLES---PDNILTEKLFCSCPSLEELSIQAYLN-DEGPTTKFVISSS 197 (341)
Q Consensus 126 L~~L~L~~~~~l~~~~---~-~~~~~~L~~L~~~L~~---~~~~~l~~ll~~cp~Le~L~L~~c~~-~~~~~~~l~i~~~ 197 (341)
+.-|.+ .++.++... . ......++.| .|.+ .++..+..++...|.|+.|+|..-.- ..++ .+.....
T Consensus 47 ~ellvl-n~~~id~~gd~~~~~~~~~~v~el--DL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~--~lp~p~~ 121 (418)
T KOG2982|consen 47 LELLVL-NGSIIDNEGDVMLFGSSVTDVKEL--DLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIK--SLPLPLK 121 (418)
T ss_pred hhhhee-cCCCCCcchhHHHHHHHhhhhhhh--hcccchhccHHHHHHHHhcCccceEeeccCCcCCCccc--cCccccc
Confidence 334555 556554321 1 2246789999 9988 56688999999999999999976432 1223 3334556
Q ss_pred CcceEEEeeecCccccccCceeEEEecCCceEEEeeccccCcee-----ecCC-CCeeEEEEEEEeCccccCCCccc-hH
Q 047191 198 TLKQCTLWVETEGEMFTQAEYKVRITAPSLERLHIMSDIFGKFV-----VHDL-NSLTDVILDIVYGEWSRVDPNRS-IQ 270 (341)
Q Consensus 198 sL~~L~i~~c~~~~~~~~~~~~~~~~~p~L~~l~~~~~~~~~~~-----~~~~-~~L~~~~l~~~~~~~~~~~~~~~-~~ 270 (341)
+|+.|.+.+ .+..+.......-+.|.+..|++++.....+. .+.. +.+.++...- .....+- + .+
T Consensus 122 nl~~lVLNg---T~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~--c~~~~w~---~~~~ 193 (418)
T KOG2982|consen 122 NLRVLVLNG---TGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLP--CLEQLWL---NKNK 193 (418)
T ss_pred ceEEEEEcC---CCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCC--cHHHHHH---HHHh
Confidence 788888887 34434445566667788888877765322111 1110 1111111110 0000111 2 67
Q ss_pred HhhcCCCceEEEEecchhhhccc-cccCCCCCCCcccEEEEEEc-CCChhHHHHHHhcCCCCCcEEEee
Q 047191 271 LLQQLNNTTSLTVSYGVLCALDH-AYHKWFPALSYLQHLEVAVG-AIGWAVLPVILSSSVHLQSLVLRK 337 (341)
Q Consensus 271 ~l~~~~~l~~L~l~~~~~~~~~~-~~~~~~~~f~~L~~L~l~~~-~~~~~~l~~ll~~cp~L~~L~l~~ 337 (341)
+-+-++|+..+.++.+.++.... ...+ .||.+--|.|... -..|+++.. |...|.|..|.+.+
T Consensus 194 l~r~Fpnv~sv~v~e~PlK~~s~ek~se---~~p~~~~LnL~~~~idswasvD~-Ln~f~~l~dlRv~~ 258 (418)
T KOG2982|consen 194 LSRIFPNVNSVFVCEGPLKTESSEKGSE---PFPSLSCLNLGANNIDSWASVDA-LNGFPQLVDLRVSE 258 (418)
T ss_pred HHhhcccchheeeecCcccchhhcccCC---CCCcchhhhhcccccccHHHHHH-HcCCchhheeeccC
Confidence 77889999999999988775532 2233 3444446777776 445666655 56677777776654
No 26
>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].
Probab=95.38 E-value=0.0058 Score=32.95 Aligned_cols=23 Identities=39% Similarity=0.726 Sum_probs=19.1
Q ss_pred chhhhhhhccC---CCcchHHHHHhcCC
Q 047191 148 NVKILTMQLES---PDNILTEKLFCSCP 172 (341)
Q Consensus 148 ~L~~L~~~L~~---~~~~~l~~ll~~cp 172 (341)
+||+| +|.. .+++.+++++++||
T Consensus 1 sLKtL--~L~~v~f~~~~~l~~LlS~CP 26 (26)
T PF07723_consen 1 SLKTL--HLDSVVFSDEDSLERLLSGCP 26 (26)
T ss_pred CCeEE--EeeEEEECChhHHHHhhccCc
Confidence 47888 8888 45568999999998
No 27
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=95.21 E-value=0.0023 Score=52.56 Aligned_cols=56 Identities=30% Similarity=0.348 Sum_probs=20.8
Q ss_pred cCcceEEEEeeeeeeccCCCcccCCchhhhhhhccC--CCcchHHHHHhcCCccceeEEeee
Q 047191 123 SPSVEVLKLMSDFLLKVPAGGTCFPNVKILTMQLES--PDNILTEKLFCSCPSLEELSIQAY 182 (341)
Q Consensus 123 ~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~~~L~~--~~~~~l~~ll~~cp~Le~L~L~~c 182 (341)
..+|+.|+| ++..+....+...+++|++| ++.+ ++.-. ..+...||+|+.|.+.+-
T Consensus 41 l~~L~~L~L-s~N~I~~l~~l~~L~~L~~L--~L~~N~I~~i~-~~l~~~lp~L~~L~L~~N 98 (175)
T PF14580_consen 41 LDKLEVLDL-SNNQITKLEGLPGLPRLKTL--DLSNNRISSIS-EGLDKNLPNLQELYLSNN 98 (175)
T ss_dssp -TT--EEE--TTS--S--TT----TT--EE--E--SS---S-C-HHHHHH-TT--EEE-TTS
T ss_pred hcCCCEEEC-CCCCCccccCccChhhhhhc--ccCCCCCCccc-cchHHhCCcCCEEECcCC
Confidence 466788888 66666544455667888888 7777 44321 123346788888888654
No 28
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=95.02 E-value=0.0064 Score=53.89 Aligned_cols=38 Identities=37% Similarity=0.594 Sum_probs=35.0
Q ss_pred CCCccCCCC----hHHHHHHHcCCChhhhhhhhccccchHHh
Q 047191 3 PAYRINALP----DSVLCHILSYLPTKNVVATSILARRWKLV 40 (341)
Q Consensus 3 ~~d~is~LP----d~iL~~Ils~Lp~~~~~~~s~vskrWr~l 40 (341)
..|-|..|| |+|-++|||+|+..++.++-.|||+|+++
T Consensus 71 qrDFi~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~ 112 (499)
T KOG0281|consen 71 QRDFITALPEQGLDHIAENILSYLDALSLCACELVCKEWKRV 112 (499)
T ss_pred HHHHHHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHH
Confidence 357789999 99999999999999999999999999854
No 29
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=94.99 E-value=0.0063 Score=53.39 Aligned_cols=58 Identities=12% Similarity=0.146 Sum_probs=39.1
Q ss_pred cCcceEEEEeeeee-------e--cc-CCCcccCCchhhhhhhccCCCcchHHHHHhcCCccceeEEeeee
Q 047191 123 SPSVEVLKLMSDFL-------L--KV-PAGGTCFPNVKILTMQLESPDNILTEKLFCSCPSLEELSIQAYL 183 (341)
Q Consensus 123 ~~~L~~L~L~~~~~-------l--~~-~~~~~~~~~L~~L~~~L~~~~~~~l~~ll~~cp~Le~L~L~~c~ 183 (341)
|..|+.|.. +... + .. +-....|++|+++ .+...+.+.+..+...-|.|+++.+++..
T Consensus 181 ~~~l~~l~v-s~~~~p~~~sni~~~~l~f~l~~f~~l~~~--~~s~~~~~~i~~~~~~kptl~t~~v~~s~ 248 (490)
T KOG1259|consen 181 CTQLVALVV-TPVKDPIDRSNIIPNRLSFNLNAFRNLKTL--KFSALSTENIVDIELLKPTLQTICVHNTT 248 (490)
T ss_pred hhheeEEEe-cCCCCCCccccccccccccchHHhhhhhee--eeeccchhheeceeecCchhheeeeeccc
Confidence 677888887 4211 1 11 1123347888888 77777777888888888889988888763
No 30
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=94.90 E-value=0.041 Score=55.62 Aligned_cols=29 Identities=17% Similarity=0.274 Sum_probs=14.8
Q ss_pred cceEEEEeeeeeeccCCCcccCCchhhhhhhccC
Q 047191 125 SVEVLKLMSDFLLKVPAGGTCFPNVKILTMQLES 158 (341)
Q Consensus 125 ~L~~L~L~~~~~l~~~~~~~~~~~L~~L~~~L~~ 158 (341)
.|+.|.+ .+..+...|. ..++|++| .|.+
T Consensus 223 ~L~~L~L-~~N~Lt~LP~--lp~~Lk~L--dLs~ 251 (788)
T PRK15387 223 HITTLVI-PDNNLTSLPA--LPPELRTL--EVSG 251 (788)
T ss_pred CCCEEEc-cCCcCCCCCC--CCCCCcEE--EecC
Confidence 5666666 4444433221 23566666 6655
No 31
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=94.48 E-value=0.011 Score=39.32 Aligned_cols=55 Identities=27% Similarity=0.382 Sum_probs=36.2
Q ss_pred CcceEEEEeeeeeeccCC--CcccCCchhhhhhhccC--CCcchHHHHHhcCCccceeEEeee
Q 047191 124 PSVEVLKLMSDFLLKVPA--GGTCFPNVKILTMQLES--PDNILTEKLFCSCPSLEELSIQAY 182 (341)
Q Consensus 124 ~~L~~L~L~~~~~l~~~~--~~~~~~~L~~L~~~L~~--~~~~~l~~ll~~cp~Le~L~L~~c 182 (341)
++|++|.+ +++.+...+ ...++++|++| ++.+ ++.-. ...+.++|+|+.|.+.++
T Consensus 1 p~L~~L~l-~~n~l~~i~~~~f~~l~~L~~L--~l~~N~l~~i~-~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDL-SNNKLTEIPPDSFSNLPNLETL--DLSNNNLTSIP-PDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEE-TSSTESEECTTTTTTGTTESEE--EETSSSESEEE-TTTTTTSTTESEEEETSS
T ss_pred CcCcEEEC-CCCCCCccCHHHHcCCCCCCEe--EccCCccCccC-HHHHcCCCCCCEEeCcCC
Confidence 46788888 666654332 34567888888 8877 33211 234778888888888765
No 32
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=94.21 E-value=0.026 Score=49.72 Aligned_cols=34 Identities=29% Similarity=0.479 Sum_probs=29.6
Q ss_pred cCCCChHHHHHHHc-----CCChhhhhhhhccccchHHh
Q 047191 7 INALPDSVLCHILS-----YLPTKNVVATSILARRWKLV 40 (341)
Q Consensus 7 is~LPd~iL~~Ils-----~Lp~~~~~~~s~vskrWr~l 40 (341)
|+.||||||.+||. .|+.+++.++|.|||.|+..
T Consensus 107 ~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~ 145 (366)
T KOG2997|consen 107 ISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKC 145 (366)
T ss_pred hhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHH
Confidence 67899999999986 45679999999999999844
No 33
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=94.02 E-value=0.031 Score=51.24 Aligned_cols=37 Identities=19% Similarity=0.325 Sum_probs=32.8
Q ss_pred cCCCChHHHHHHHcCCCh-hhhhhhhccccchHHhhcc
Q 047191 7 INALPDSVLCHILSYLPT-KNVVATSILARRWKLVWTS 43 (341)
Q Consensus 7 is~LPd~iL~~Ils~Lp~-~~~~~~s~vskrWr~lw~~ 43 (341)
-++||+|+|..|..+||. -|.+|.+.|||.||..-..
T Consensus 4 Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~ 41 (373)
T PLN03215 4 WSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSG 41 (373)
T ss_pred hhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccc
Confidence 468999999999999985 7999999999999986543
No 34
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=93.54 E-value=0.042 Score=55.52 Aligned_cols=96 Identities=19% Similarity=0.123 Sum_probs=46.5
Q ss_pred cCcceEEEEeeeeeeccCCCcccCCchhhhhhhccC--CC---------------cchHHHHHhcCCccceeEEeeeecC
Q 047191 123 SPSVEVLKLMSDFLLKVPAGGTCFPNVKILTMQLES--PD---------------NILTEKLFCSCPSLEELSIQAYLND 185 (341)
Q Consensus 123 ~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~~~L~~--~~---------------~~~l~~ll~~cp~Le~L~L~~c~~~ 185 (341)
.++|++|+| ++..+...|.. .++|+.| .|.. ++ ...+..+-..-|.|+.|++.++.-.
T Consensus 241 p~~Lk~LdL-s~N~LtsLP~l--p~sL~~L--~Ls~N~L~~Lp~lp~~L~~L~Ls~N~Lt~LP~~p~~L~~LdLS~N~L~ 315 (788)
T PRK15387 241 PPELRTLEV-SGNQLTSLPVL--PPGLLEL--SIFSNPLTHLPALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLA 315 (788)
T ss_pred CCCCcEEEe-cCCccCcccCc--cccccee--eccCCchhhhhhchhhcCEEECcCCccccccccccccceeECCCCccc
Confidence 488888888 65555332232 2455555 4444 11 1111111122367888888776443
Q ss_pred CCCceeEEEeCCCcceEEEeeecCccccccCceeEEEecCCceEEEeeccc
Q 047191 186 EGPTTKFVISSSTLKQCTLWVETEGEMFTQAEYKVRITAPSLERLHIMSDI 236 (341)
Q Consensus 186 ~~~~~~l~i~~~sL~~L~i~~c~~~~~~~~~~~~~~~~~p~L~~l~~~~~~ 236 (341)
.++ . ..++|+.|.+.+| . ...+.--.++|+.|.+++..
T Consensus 316 ~Lp--~---lp~~L~~L~Ls~N---~-----L~~LP~lp~~Lq~LdLS~N~ 353 (788)
T PRK15387 316 SLP--A---LPSELCKLWAYNN---Q-----LTSLPTLPSGLQELSVSDNQ 353 (788)
T ss_pred cCC--C---CcccccccccccC---c-----cccccccccccceEecCCCc
Confidence 322 1 1235666766663 1 11111112357777776543
No 35
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=93.53 E-value=0.046 Score=55.27 Aligned_cols=34 Identities=12% Similarity=0.135 Sum_probs=21.0
Q ss_pred cccEEEEEEc-CCC-hhHHHHHHhcCCCCCcEEEee
Q 047191 304 YLQHLEVAVG-AIG-WAVLPVILSSSVHLQSLVLRK 337 (341)
Q Consensus 304 ~L~~L~l~~~-~~~-~~~l~~ll~~cp~L~~L~l~~ 337 (341)
+|+.|++..+ -.. ...+..+...+|++..|.+.+
T Consensus 389 sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~ 424 (754)
T PRK15370 389 ALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEY 424 (754)
T ss_pred HHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeC
Confidence 4666666665 112 234566777778888887765
No 36
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=93.05 E-value=0.074 Score=53.84 Aligned_cols=71 Identities=20% Similarity=0.196 Sum_probs=36.1
Q ss_pred CcceEEEEeeeeeeccCCCcccCCchhhhhhhccC--CCcchHHHHHhcCCccceeEEeeeecCCCCceeEEEeCCCcce
Q 047191 124 PSVEVLKLMSDFLLKVPAGGTCFPNVKILTMQLES--PDNILTEKLFCSCPSLEELSIQAYLNDEGPTTKFVISSSTLKQ 201 (341)
Q Consensus 124 ~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~~~L~~--~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~l~i~~~sL~~ 201 (341)
+.|+.|.| ++..+...|.. -+++|++| +|.+ ++. +..-+ .+.|+.|.|.+|.-..++ . .+ .++|+.
T Consensus 199 ~~L~~L~L-s~N~LtsLP~~-l~~nL~~L--~Ls~N~Lts--LP~~l--~~~L~~L~Ls~N~L~~LP--~-~l-~s~L~~ 266 (754)
T PRK15370 199 EQITTLIL-DNNELKSLPEN-LQGNIKTL--YANSNQLTS--IPATL--PDTIQEMELSINRITELP--E-RL-PSALQS 266 (754)
T ss_pred cCCcEEEe-cCCCCCcCChh-hccCCCEE--ECCCCcccc--CChhh--hccccEEECcCCccCcCC--h-hH-hCCCCE
Confidence 45777777 55555433222 23577777 7766 321 11111 246777777776543222 1 11 235777
Q ss_pred EEEee
Q 047191 202 CTLWV 206 (341)
Q Consensus 202 L~i~~ 206 (341)
|.+.+
T Consensus 267 L~Ls~ 271 (754)
T PRK15370 267 LDLFH 271 (754)
T ss_pred EECcC
Confidence 77665
No 37
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=92.16 E-value=0.14 Score=33.82 Aligned_cols=40 Identities=23% Similarity=0.308 Sum_probs=18.8
Q ss_pred HHhhcCCCceEEEEecchhhhccccccCCCCCCCcccEEEEEE
Q 047191 270 QLLQQLNNTTSLTVSYGVLCALDHAYHKWFPALSYLQHLEVAV 312 (341)
Q Consensus 270 ~~l~~~~~l~~L~l~~~~~~~~~~~~~~~~~~f~~L~~L~l~~ 312 (341)
..++++++++.|.++.+.++.+.. ..+..+++|++|++..
T Consensus 19 ~~f~~l~~L~~L~l~~N~l~~i~~---~~f~~l~~L~~L~l~~ 58 (61)
T PF13855_consen 19 DSFSNLPNLETLDLSNNNLTSIPP---DAFSNLPNLRYLDLSN 58 (61)
T ss_dssp TTTTTGTTESEEEETSSSESEEET---TTTTTSTTESEEEETS
T ss_pred HHHcCCCCCCEeEccCCccCccCH---HHHcCCCCCCEEeCcC
Confidence 344455666666665554433211 1122444555555543
No 38
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=91.79 E-value=0.089 Score=45.79 Aligned_cols=156 Identities=13% Similarity=-0.012 Sum_probs=79.1
Q ss_pred chHHHHHhcCCccceeEEeeeecCCCCceeEEEeCCCcceEEEeeecCccccccCceeEEEecCCceEEEeeccccCce-
Q 047191 162 ILTEKLFCSCPSLEELSIQAYLNDEGPTTKFVISSSTLKQCTLWVETEGEMFTQAEYKVRITAPSLERLHIMSDIFGKF- 240 (341)
Q Consensus 162 ~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~l~i~~~sL~~L~i~~c~~~~~~~~~~~~~~~~~p~L~~l~~~~~~~~~~- 240 (341)
+.+..+++....|++|.+.+|.-.... --+|. .-|.+| +..+-.-+.|.|+++..-.......
T Consensus 110 e~L~d~is~~t~l~HL~l~NnGlGp~a--G~rig-kal~~l-------------a~nKKaa~kp~Le~vicgrNRlengs 173 (388)
T COG5238 110 EELGDLISSSTDLVHLKLNNNGLGPIA--GGRIG-KALFHL-------------AYNKKAADKPKLEVVICGRNRLENGS 173 (388)
T ss_pred hHHHHHHhcCCCceeEEeecCCCCccc--hhHHH-HHHHHH-------------HHHhhhccCCCceEEEeccchhccCc
Confidence 445555777777777777777432111 00000 001111 2233445688888887643222111
Q ss_pred ------eecCCCCeeEEEEEEEeCccccCCCccc--hHHhhcCCCceEEEEecchhhhcccc-ccCCCCCCCcccEEEEE
Q 047191 241 ------VVHDLNSLTDVILDIVYGEWSRVDPNRS--IQLLQQLNNTTSLTVSYGVLCALDHA-YHKWFPALSYLQHLEVA 311 (341)
Q Consensus 241 ------~~~~~~~L~~~~l~~~~~~~~~~~~~~~--~~~l~~~~~l~~L~l~~~~~~~~~~~-~~~~~~~f~~L~~L~l~ 311 (341)
.++....|.++.+.-........ .. .-=+..+.+++.|.|..+++...... -...++..++|++|.+.
T Consensus 174 ~~~~a~~l~sh~~lk~vki~qNgIrpegv---~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~ln 250 (388)
T COG5238 174 KELSAALLESHENLKEVKIQQNGIRPEGV---TMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLN 250 (388)
T ss_pred HHHHHHHHHhhcCceeEEeeecCcCcchh---HHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhcccc
Confidence 13333456666554221111100 01 11235678999999998876433211 12345678889999999
Q ss_pred EcCCChhHHHHHHhc-----CCCCCcEEEe
Q 047191 312 VGAIGWAVLPVILSS-----SVHLQSLVLR 336 (341)
Q Consensus 312 ~~~~~~~~l~~ll~~-----cp~L~~L~l~ 336 (341)
.|-...++...+++. .|+|..|-.+
T Consensus 251 DClls~~G~~~v~~~f~e~~~p~l~~L~~~ 280 (388)
T COG5238 251 DCLLSNEGVKSVLRRFNEKFVPNLMPLPGD 280 (388)
T ss_pred chhhccccHHHHHHHhhhhcCCCccccccc
Confidence 982222333333333 2888877654
No 39
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=90.43 E-value=0.12 Score=31.75 Aligned_cols=33 Identities=21% Similarity=0.265 Sum_probs=13.4
Q ss_pred CceEEEEecchhhhccccccCCCCCCCcccEEEEEEc
Q 047191 277 NTTSLTVSYGVLCALDHAYHKWFPALSYLQHLEVAVG 313 (341)
Q Consensus 277 ~l~~L~l~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~ 313 (341)
+++.|.++.+.++.+.. . +..+++|+.|+++.+
T Consensus 2 ~L~~L~l~~N~i~~l~~-~---l~~l~~L~~L~l~~N 34 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPP-E---LSNLPNLETLNLSNN 34 (44)
T ss_dssp T-SEEEETSSS-SSHGG-H---GTTCTTSSEEEETSS
T ss_pred cceEEEccCCCCcccCc-h---HhCCCCCCEEEecCC
Confidence 44555555544432210 0 224445555555444
No 40
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=90.23 E-value=0.0023 Score=61.44 Aligned_cols=33 Identities=27% Similarity=0.209 Sum_probs=17.3
Q ss_pred CCCcccEEEEEEc-CCChhHHHHHHhcCCCCCcEEEe
Q 047191 301 ALSYLQHLEVAVG-AIGWAVLPVILSSSVHLQSLVLR 336 (341)
Q Consensus 301 ~f~~L~~L~l~~~-~~~~~~l~~ll~~cp~L~~L~l~ 336 (341)
.+..|++|.|..+ -++...-+++| |.|+.|+++
T Consensus 337 RC~kL~kL~L~~NrLiTLPeaIHlL---~~l~vLDlr 370 (1255)
T KOG0444|consen 337 RCVKLQKLKLDHNRLITLPEAIHLL---PDLKVLDLR 370 (1255)
T ss_pred hhHHHHHhcccccceeechhhhhhc---CCcceeecc
Confidence 4556667766665 33433333333 556666554
No 41
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=90.14 E-value=0.18 Score=44.57 Aligned_cols=56 Identities=13% Similarity=0.060 Sum_probs=37.2
Q ss_pred CchhhhhhhccC----CCc-----chHHHHHhcCCccceeEEeeeecCCCCceeEEEeCCCcceEEEee
Q 047191 147 PNVKILTMQLES----PDN-----ILTEKLFCSCPSLEELSIQAYLNDEGPTTKFVISSSTLKQCTLWV 206 (341)
Q Consensus 147 ~~L~~L~~~L~~----~~~-----~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~l~i~~~sL~~L~i~~ 206 (341)
.+|+.| .... ++. .-+..=++.+.+|..+.++.|....++ .+...-|+|..+.+..
T Consensus 182 ~~l~~l--~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~~~i~--~~~~~kptl~t~~v~~ 246 (490)
T KOG1259|consen 182 TQLVAL--VVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALSTENIV--DIELLKPTLQTICVHN 246 (490)
T ss_pred hheeEE--EecCCCCCCccccccccccccchHHhhhhheeeeeccchhhee--ceeecCchhheeeeec
Confidence 566666 6655 222 223333567888888888888776666 6666778888887776
No 42
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=88.29 E-value=0.22 Score=30.58 Aligned_cols=32 Identities=22% Similarity=0.313 Sum_probs=17.3
Q ss_pred chhhhhhhccC--CCcchHHHHHhcCCccceeEEeeee
Q 047191 148 NVKILTMQLES--PDNILTEKLFCSCPSLEELSIQAYL 183 (341)
Q Consensus 148 ~L~~L~~~L~~--~~~~~l~~ll~~cp~Le~L~L~~c~ 183 (341)
+|++| ++.+ +++ +...++.||+|+.|++.++.
T Consensus 2 ~L~~L--~l~~N~i~~--l~~~l~~l~~L~~L~l~~N~ 35 (44)
T PF12799_consen 2 NLEEL--DLSNNQITD--LPPELSNLPNLETLNLSNNP 35 (44)
T ss_dssp T-SEE--EETSSS-SS--HGGHGTTCTTSSEEEETSSC
T ss_pred cceEE--EccCCCCcc--cCchHhCCCCCCEEEecCCC
Confidence 45555 5555 332 33335667777777776664
No 43
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=87.99 E-value=0.026 Score=56.67 Aligned_cols=177 Identities=17% Similarity=0.108 Sum_probs=85.4
Q ss_pred cccccccCcceEEEEeeeeeeccCC-CcccCCchhhhhhhccC--C---Cc-------chHHHHHhcCCccceeE-----
Q 047191 117 QIELYASPSVEVLKLMSDFLLKVPA-GGTCFPNVKILTMQLES--P---DN-------ILTEKLFCSCPSLEELS----- 178 (341)
Q Consensus 117 p~~~~~~~~L~~L~L~~~~~l~~~~-~~~~~~~L~~L~~~L~~--~---~~-------~~l~~ll~~cp~Le~L~----- 178 (341)
|..++...+|++|.. ..+.+...+ -..++..|++| .|+. + .+ ..+..+-..|-.|+.+-
T Consensus 280 p~ri~~~~~L~~l~~-~~nel~yip~~le~~~sL~tL--dL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~ 356 (1081)
T KOG0618|consen 280 PLRISRITSLVSLSA-AYNELEYIPPFLEGLKSLRTL--DLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEEN 356 (1081)
T ss_pred HHHHhhhhhHHHHHh-hhhhhhhCCCcccccceeeee--eehhccccccchHHHhhhhHHHHHHhhhhccccccccccch
Confidence 556666666777776 666554433 33447788888 7777 1 11 11222222333333333
Q ss_pred ---------Eeeee-cCCCCceeEEEeCCCcceEEEeeecCccccccCceeEEEecCCceEEEeeccccCce--eecCCC
Q 047191 179 ---------IQAYL-NDEGPTTKFVISSSTLKQCTLWVETEGEMFTQAEYKVRITAPSLERLHIMSDIFGKF--VVHDLN 246 (341)
Q Consensus 179 ---------L~~c~-~~~~~~~~l~i~~~sL~~L~i~~c~~~~~~~~~~~~~~~~~p~L~~l~~~~~~~~~~--~~~~~~ 246 (341)
+.+-. ++..- .+-....+||.|++...+-..+ ..+..-..+.||.|.++|.....+ .+.+++
T Consensus 357 ~~~~Lq~LylanN~Ltd~c~--p~l~~~~hLKVLhLsyNrL~~f----pas~~~kle~LeeL~LSGNkL~~Lp~tva~~~ 430 (1081)
T KOG0618|consen 357 NHAALQELYLANNHLTDSCF--PVLVNFKHLKVLHLSYNRLNSF----PASKLRKLEELEELNLSGNKLTTLPDTVANLG 430 (1081)
T ss_pred hhHHHHHHHHhcCcccccch--hhhccccceeeeeecccccccC----CHHHHhchHHhHHHhcccchhhhhhHHHHhhh
Confidence 22211 11111 1223455677777666210111 112222345666677766554322 233444
Q ss_pred CeeEEEEEEEeCccccCCCccchHHhhcCCCceEEEEecchhhhccccccCCCCCCCcccEEEEEEc
Q 047191 247 SLTDVILDIVYGEWSRVDPNRSIQLLQQLNNTTSLTVSYGVLCALDHAYHKWFPALSYLQHLEVAVG 313 (341)
Q Consensus 247 ~L~~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~L~l~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~ 313 (341)
+|..+.-+...-. ...-+..++.++.++++.+.++-+..+. ..|. ++|++|+++.+
T Consensus 431 ~L~tL~ahsN~l~--------~fPe~~~l~qL~~lDlS~N~L~~~~l~~--~~p~-p~LkyLdlSGN 486 (1081)
T KOG0618|consen 431 RLHTLRAHSNQLL--------SFPELAQLPQLKVLDLSCNNLSEVTLPE--ALPS-PNLKYLDLSGN 486 (1081)
T ss_pred hhHHHhhcCCcee--------echhhhhcCcceEEecccchhhhhhhhh--hCCC-cccceeeccCC
Confidence 4443322110000 0223567788888888887776442221 2232 68999999887
No 44
>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].
Probab=87.69 E-value=0.68 Score=24.81 Aligned_cols=25 Identities=20% Similarity=0.062 Sum_probs=19.3
Q ss_pred cccEEEEEEc-CCChhHHHHHHhcCC
Q 047191 304 YLQHLEVAVG-AIGWAVLPVILSSSV 328 (341)
Q Consensus 304 ~L~~L~l~~~-~~~~~~l~~ll~~cp 328 (341)
+||.|.|... ..+...+..++.+||
T Consensus 1 sLKtL~L~~v~f~~~~~l~~LlS~CP 26 (26)
T PF07723_consen 1 SLKTLHLDSVVFSDEDSLERLLSGCP 26 (26)
T ss_pred CCeEEEeeEEEECChhHHHHhhccCc
Confidence 3778888776 455667889999998
No 45
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=87.55 E-value=0.67 Score=38.70 Aligned_cols=56 Identities=25% Similarity=0.376 Sum_probs=29.9
Q ss_pred cCcceEEEEeeeeee-ccCCCcc-cCCchhhhhhhccC--C-CcchHHHHHhcCCccceeEEeee
Q 047191 123 SPSVEVLKLMSDFLL-KVPAGGT-CFPNVKILTMQLES--P-DNILTEKLFCSCPSLEELSIQAY 182 (341)
Q Consensus 123 ~~~L~~L~L~~~~~l-~~~~~~~-~~~~L~~L~~~L~~--~-~~~~l~~ll~~cp~Le~L~L~~c 182 (341)
.+.|..|.| ++-.+ ...+... -+|+|++| .|.+ + .-++++. +++||.|++|.+.+-
T Consensus 63 l~rL~tLll-~nNrIt~I~p~L~~~~p~l~~L--~LtnNsi~~l~dl~p-La~~p~L~~Ltll~N 123 (233)
T KOG1644|consen 63 LPRLHTLLL-NNNRITRIDPDLDTFLPNLKTL--ILTNNSIQELGDLDP-LASCPKLEYLTLLGN 123 (233)
T ss_pred ccccceEEe-cCCcceeeccchhhhccccceE--EecCcchhhhhhcch-hccCCccceeeecCC
Confidence 456666777 43332 2222222 35677777 6655 2 2233333 566777777777653
No 46
>PRK15386 type III secretion protein GogB; Provisional
Probab=87.39 E-value=1 Score=42.14 Aligned_cols=69 Identities=10% Similarity=0.114 Sum_probs=40.2
Q ss_pred cCcceEEEEeeeeeeccCCCcccCC-chhhhhhhccC-CCcchHHHHHhcCCccceeEEeeeecCCCCceeEEEeCCCcc
Q 047191 123 SPSVEVLKLMSDFLLKVPAGGTCFP-NVKILTMQLES-PDNILTEKLFCSCPSLEELSIQAYLNDEGPTTKFVISSSTLK 200 (341)
Q Consensus 123 ~~~L~~L~L~~~~~l~~~~~~~~~~-~L~~L~~~L~~-~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~l~i~~~sL~ 200 (341)
|..+++|.+ ++|.+...| .+| +|+.| .+.+ ..-..+...+ .+.|+.|.+.+|... . .+ .++|+
T Consensus 51 ~~~l~~L~I-s~c~L~sLP---~LP~sLtsL--~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L--~--sL---P~sLe 115 (426)
T PRK15386 51 ARASGRLYI-KDCDIESLP---VLPNELTEI--TIENCNNLTTLPGSI--PEGLEKLTVCHCPEI--S--GL---PESVR 115 (426)
T ss_pred hcCCCEEEe-CCCCCcccC---CCCCCCcEE--EccCCCCcccCCchh--hhhhhheEccCcccc--c--cc---ccccc
Confidence 567888888 777665443 233 68888 7766 2212221122 367888888888542 2 11 24577
Q ss_pred eEEEee
Q 047191 201 QCTLWV 206 (341)
Q Consensus 201 ~L~i~~ 206 (341)
.|.+..
T Consensus 116 ~L~L~~ 121 (426)
T PRK15386 116 SLEIKG 121 (426)
T ss_pred eEEeCC
Confidence 777654
No 47
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.23 E-value=0.38 Score=42.60 Aligned_cols=83 Identities=13% Similarity=0.100 Sum_probs=48.5
Q ss_pred CchhhhhhhccC---CCcchHHHHHhcCCccceeEEeeeec---CCCCceeEEEeCCCcceEEEeeecCccccccCceeE
Q 047191 147 PNVKILTMQLES---PDNILTEKLFCSCPSLEELSIQAYLN---DEGPTTKFVISSSTLKQCTLWVETEGEMFTQAEYKV 220 (341)
Q Consensus 147 ~~L~~L~~~L~~---~~~~~l~~ll~~cp~Le~L~L~~c~~---~~~~~~~l~i~~~sL~~L~i~~c~~~~~~~~~~~~~ 220 (341)
..+.-| ++.+ .+.+....+-+.|..+++|+|.+-.- .++. ++.-..|.|+.|++++.. . .+.....
T Consensus 45 ra~ell--vln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~--~ile~lP~l~~LNls~N~---L-~s~I~~l 116 (418)
T KOG2982|consen 45 RALELL--VLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIG--AILEQLPALTTLNLSCNS---L-SSDIKSL 116 (418)
T ss_pred cchhhh--eecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHH--HHHhcCccceEeeccCCc---C-CCccccC
Confidence 456677 7777 45567777788899999999977421 1122 344456777777777621 0 0111222
Q ss_pred EEecCCceEEEeecccc
Q 047191 221 RITAPSLERLHIMSDIF 237 (341)
Q Consensus 221 ~~~~p~L~~l~~~~~~~ 237 (341)
..-..+|+++.+.|...
T Consensus 117 p~p~~nl~~lVLNgT~L 133 (418)
T KOG2982|consen 117 PLPLKNLRVLVLNGTGL 133 (418)
T ss_pred cccccceEEEEEcCCCC
Confidence 22233677777766543
No 48
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=86.31 E-value=0.32 Score=47.32 Aligned_cols=39 Identities=26% Similarity=0.490 Sum_probs=35.8
Q ss_pred CCCCccCCCChHHHHHHHcCCChhhhhhhhccccchHHh
Q 047191 2 VPAYRINALPDSVLCHILSYLPTKNVVATSILARRWKLV 40 (341)
Q Consensus 2 ~~~d~is~LPd~iL~~Ils~Lp~~~~~~~s~vskrWr~l 40 (341)
...|.|+.||-|+..+|+++|+.++..+.+.||+.|+.+
T Consensus 103 ~~~dfi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~ 141 (537)
T KOG0274|consen 103 GQRDFLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKL 141 (537)
T ss_pred cccchhhcccchhcccccccCCHHHhhhhhhhcchhhhh
Confidence 346789999999999999999999999999999999855
No 49
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=84.96 E-value=0.036 Score=44.85 Aligned_cols=61 Identities=21% Similarity=0.256 Sum_probs=37.5
Q ss_pred cccccCcceEEEEeeeeeeccCCCcccCCchhhhhhhccCCCcchHHHHHhcCCccceeEEee
Q 047191 119 ELYASPSVEVLKLMSDFLLKVPAGGTCFPNVKILTMQLESPDNILTEKLFCSCPSLEELSIQA 181 (341)
Q Consensus 119 ~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~~~L~~~~~~~l~~ll~~cp~Le~L~L~~ 181 (341)
.+|..+..++|.|+++....++|....+.+|+.| ++..-.-+.+-.-+++.|+|+.|++..
T Consensus 28 gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevl--n~~nnqie~lp~~issl~klr~lnvgm 88 (264)
T KOG0617|consen 28 GLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVL--NLSNNQIEELPTSISSLPKLRILNVGM 88 (264)
T ss_pred cccchhhhhhhhcccCceeecCCcHHHhhhhhhh--hcccchhhhcChhhhhchhhhheecch
Confidence 3556667778888334444556566677888888 776611122222366777887777753
No 50
>PF13013 F-box-like_2: F-box-like domain
Probab=84.64 E-value=0.55 Score=35.13 Aligned_cols=30 Identities=27% Similarity=0.272 Sum_probs=26.2
Q ss_pred ccCCCChHHHHHHHcCCChhhhhhhhcccc
Q 047191 6 RINALPDSVLCHILSYLPTKNVVATSILAR 35 (341)
Q Consensus 6 ~is~LPd~iL~~Ils~Lp~~~~~~~s~vsk 35 (341)
.+.+||+|++..|+.+-...+.......++
T Consensus 21 tl~DLP~ELl~~I~~~C~~~~l~~l~~~~~ 50 (109)
T PF13013_consen 21 TLLDLPWELLQLIFDYCNDPILLALSRTCR 50 (109)
T ss_pred chhhChHHHHHHHHhhcCcHHHHHHHHHHH
Confidence 377899999999999999998887777776
No 51
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=83.55 E-value=0.43 Score=41.26 Aligned_cols=39 Identities=13% Similarity=-0.032 Sum_probs=19.1
Q ss_pred cCCCceEEEEecchhhhccccccCCCCCCCcccEEEEEEc
Q 047191 274 QLNNTTSLTVSYGVLCALDHAYHKWFPALSYLQHLEVAVG 313 (341)
Q Consensus 274 ~~~~l~~L~l~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~ 313 (341)
.++++|.|.++.+...+...+... +-++|+|++|+++.+
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l~vl-~e~~P~l~~l~ls~N 101 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGLEVL-AEKAPNLKVLNLSGN 101 (260)
T ss_pred CcchhhhhcccCCcccccccceeh-hhhCCceeEEeecCC
Confidence 455666666666544332211100 013356666666665
No 52
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=82.78 E-value=0.76 Score=38.37 Aligned_cols=69 Identities=17% Similarity=0.068 Sum_probs=47.1
Q ss_pred hHHhhcCCCceEEEEecchhhhccccccCCCCCCCcccEEEEEEcC--CChhHHHHHHhcCCCCCcEEEeeee
Q 047191 269 IQLLQQLNNTTSLTVSYGVLCALDHAYHKWFPALSYLQHLEVAVGA--IGWAVLPVILSSSVHLQSLVLRKVI 339 (341)
Q Consensus 269 ~~~l~~~~~l~~L~l~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~--~~~~~l~~ll~~cp~L~~L~l~~~~ 339 (341)
-.+..-+++++.|.+.++.++-+. +...+..+|.|+.|.+..+. .....=.+++-..|+|+.|++.++.
T Consensus 81 p~L~~~~p~l~~L~LtnNsi~~l~--dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 81 PDLDTFLPNLKTLILTNNSIQELG--DLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred cchhhhccccceEEecCcchhhhh--hcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence 445566788999999998887653 22223367789999888872 2222334567778999999988764
No 53
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=82.73 E-value=0.55 Score=43.88 Aligned_cols=165 Identities=17% Similarity=0.186 Sum_probs=93.2
Q ss_pred cCcceEEEEeeeeeeccCCCccc-C-CchhhhhhhccCCCcchHHHHHhcCCccceeEEeeeecCCCCceeEEEeCCCcc
Q 047191 123 SPSVEVLKLMSDFLLKVPAGGTC-F-PNVKILTMQLESPDNILTEKLFCSCPSLEELSIQAYLNDEGPTTKFVISSSTLK 200 (341)
Q Consensus 123 ~~~L~~L~L~~~~~l~~~~~~~~-~-~~L~~L~~~L~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~l~i~~~sL~ 200 (341)
.+.++.|.+ .+-.+...+.... + ++|+.| ++..-.-..+..-+..+|.|+.|.+.++.-.... ......+.|+
T Consensus 115 ~~~l~~L~l-~~n~i~~i~~~~~~~~~nL~~L--~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~--~~~~~~~~L~ 189 (394)
T COG4886 115 LTNLTSLDL-DNNNITDIPPLIGLLKSNLKEL--DLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLP--KLLSNLSNLN 189 (394)
T ss_pred ccceeEEec-CCcccccCccccccchhhcccc--cccccchhhhhhhhhccccccccccCCchhhhhh--hhhhhhhhhh
Confidence 356888888 6544433323333 3 289999 8766222222234778999999999999765444 3333677899
Q ss_pred eEEEeeecCccccccCceeEEE--ecCC-ceEEEeeccc-cCc-eeecCCCCeeEEEEEEEeCccccCCCccc-hHHhhc
Q 047191 201 QCTLWVETEGEMFTQAEYKVRI--TAPS-LERLHIMSDI-FGK-FVVHDLNSLTDVILDIVYGEWSRVDPNRS-IQLLQQ 274 (341)
Q Consensus 201 ~L~i~~c~~~~~~~~~~~~~~~--~~p~-L~~l~~~~~~-~~~-~~~~~~~~L~~~~l~~~~~~~~~~~~~~~-~~~l~~ 274 (341)
.|.+++. ....+.. ..++ |+++.+.+.. ... ..+.+...+....+.- .+.. . ...+..
T Consensus 190 ~L~ls~N--------~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~-----n~~~---~~~~~~~~ 253 (394)
T COG4886 190 NLDLSGN--------KISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSN-----NKLE---DLPESIGN 253 (394)
T ss_pred heeccCC--------ccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCC-----ceee---eccchhcc
Confidence 9988882 2333333 2444 8888776652 111 1223333333222110 0000 0 255667
Q ss_pred CCCceEEEEecchhhhccccccCCCCCCCcccEEEEEEc
Q 047191 275 LNNTTSLTVSYGVLCALDHAYHKWFPALSYLQHLEVAVG 313 (341)
Q Consensus 275 ~~~l~~L~l~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~ 313 (341)
+++++.|.++.+.+.-+.. +..+.+|++|.+...
T Consensus 254 l~~l~~L~~s~n~i~~i~~-----~~~~~~l~~L~~s~n 287 (394)
T COG4886 254 LSNLETLDLSNNQISSISS-----LGSLTNLRELDLSGN 287 (394)
T ss_pred ccccceecccccccccccc-----ccccCccCEEeccCc
Confidence 7778888888766543322 335667888888764
No 54
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=82.27 E-value=0.96 Score=39.62 Aligned_cols=198 Identities=17% Similarity=0.132 Sum_probs=102.0
Q ss_pred cCcceEEEEeeeeeeccCC------CcccCCchhhhhhhccC-CCc----------chHHHHHhcCCccceeEEeeeecC
Q 047191 123 SPSVEVLKLMSDFLLKVPA------GGTCFPNVKILTMQLES-PDN----------ILTEKLFCSCPSLEELSIQAYLND 185 (341)
Q Consensus 123 ~~~L~~L~L~~~~~l~~~~------~~~~~~~L~~L~~~L~~-~~~----------~~l~~ll~~cp~Le~L~L~~c~~~ 185 (341)
..+++.+.| ++-.+.... ...+-.+|+.. ++.+ .+. ..+...+..||.|+..+|++--..
T Consensus 29 ~d~~~evdL-SGNtigtEA~e~l~~~ia~~~~L~vv--nfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg 105 (388)
T COG5238 29 MDELVEVDL-SGNTIGTEAMEELCNVIANVRNLRVV--NFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG 105 (388)
T ss_pred hcceeEEec-cCCcccHHHHHHHHHHHhhhcceeEe--ehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccC
Confidence 456788888 655443211 11123455555 5555 221 234455678999999888774321
Q ss_pred -CCCce--eEEEeCCCcceEEEeeecCccccccCceeEEEecCCceEEEeeccccCceeecCCCCeeEEEEEEEeCcccc
Q 047191 186 -EGPTT--KFVISSSTLKQCTLWVETEGEMFTQAEYKVRITAPSLERLHIMSDIFGKFVVHDLNSLTDVILDIVYGEWSR 262 (341)
Q Consensus 186 -~~~~~--~l~i~~~sL~~L~i~~c~~~~~~~~~~~~~~~~~p~L~~l~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~ 262 (341)
..+++ .+--++..|++|.+++| ++--.+...+. ..|-.|.+.. ...+.|.|+.+...- ++
T Consensus 106 ~~~~e~L~d~is~~t~l~HL~l~Nn---GlGp~aG~rig---kal~~la~nK------Kaa~kp~Le~vicgr-----NR 168 (388)
T COG5238 106 SEFPEELGDLISSSTDLVHLKLNNN---GLGPIAGGRIG---KALFHLAYNK------KAADKPKLEVVICGR-----NR 168 (388)
T ss_pred cccchHHHHHHhcCCCceeEEeecC---CCCccchhHHH---HHHHHHHHHh------hhccCCCceEEEecc-----ch
Confidence 11100 22224455777777773 21000111111 1111111110 123456666554321 12
Q ss_pred CCCcc--c-hHHhhcCCCceEEEEecchhhhcc--ccccCCCCCCCcccEEEEEEc---CCChhHHHHHHhcCCCCCcEE
Q 047191 263 VDPNR--S-IQLLQQLNNTTSLTVSYGVLCALD--HAYHKWFPALSYLQHLEVAVG---AIGWAVLPVILSSSVHLQSLV 334 (341)
Q Consensus 263 ~~~~~--~-~~~l~~~~~l~~L~l~~~~~~~~~--~~~~~~~~~f~~L~~L~l~~~---~~~~~~l~~ll~~cp~L~~L~ 334 (341)
+.... - ...++.-.+++.+.+.-+++.--. ..-...+.++++|+.|+|..+ ..+...+...+..-|+|+.|.
T Consensus 169 lengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~ 248 (388)
T COG5238 169 LENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELR 248 (388)
T ss_pred hccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhcc
Confidence 22111 1 556666689999999877753110 011122447889999999997 233456677777779999988
Q ss_pred Eeeeee
Q 047191 335 LRKVII 340 (341)
Q Consensus 335 l~~~~~ 340 (341)
+.+.-+
T Consensus 249 lnDCll 254 (388)
T COG5238 249 LNDCLL 254 (388)
T ss_pred ccchhh
Confidence 876544
No 55
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=81.67 E-value=1.4 Score=39.84 Aligned_cols=36 Identities=25% Similarity=0.317 Sum_probs=25.5
Q ss_pred CCcccEEEEEEcC---CChhHHHHHHhcCCCCCcEEEee
Q 047191 302 LSYLQHLEVAVGA---IGWAVLPVILSSSVHLQSLVLRK 337 (341)
Q Consensus 302 f~~L~~L~l~~~~---~~~~~l~~ll~~cp~L~~L~l~~ 337 (341)
.++|+.+.+..+. .+...+..=+..||.||+|++.+
T Consensus 184 ~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~D 222 (382)
T KOG1909|consen 184 HPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRD 222 (382)
T ss_pred ccccceEEEecccccCchhHHHHHHHHhCCcceeeeccc
Confidence 4578888888772 23445666678888888888876
No 56
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.50 E-value=0.51 Score=39.32 Aligned_cols=37 Identities=24% Similarity=0.158 Sum_probs=26.3
Q ss_pred CCCcccEEEEEEc-CCChhHHHHHHhcCCCCCcEEEeee
Q 047191 301 ALSYLQHLEVAVG-AIGWAVLPVILSSSVHLQSLVLRKV 338 (341)
Q Consensus 301 ~f~~L~~L~l~~~-~~~~~~l~~ll~~cp~L~~L~l~~~ 338 (341)
.+++|+.|+|+.| .++..++.+ |...+||+.|+|.++
T Consensus 149 ~~~~L~~L~lsgC~rIT~~GL~~-L~~lknLr~L~l~~l 186 (221)
T KOG3864|consen 149 LAPSLQDLDLSGCPRITDGGLAC-LLKLKNLRRLHLYDL 186 (221)
T ss_pred cccchheeeccCCCeechhHHHH-HHHhhhhHHHHhcCc
Confidence 5677888888877 777777766 445677777777654
No 57
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=81.26 E-value=0.038 Score=53.42 Aligned_cols=36 Identities=19% Similarity=0.282 Sum_probs=21.0
Q ss_pred CCCcccEEEEEEcCCChhHHHHHHhcCCCCCcEEEeee
Q 047191 301 ALSYLQHLEVAVGAIGWAVLPVILSSSVHLQSLVLRKV 338 (341)
Q Consensus 301 ~f~~L~~L~l~~~~~~~~~l~~ll~~cp~L~~L~l~~~ 338 (341)
.+.||..++++.+ +...+..-+=..++|+.|.+++=
T Consensus 220 ~l~NL~dvDlS~N--~Lp~vPecly~l~~LrrLNLS~N 255 (1255)
T KOG0444|consen 220 DLHNLRDVDLSEN--NLPIVPECLYKLRNLRRLNLSGN 255 (1255)
T ss_pred hhhhhhhcccccc--CCCcchHHHhhhhhhheeccCcC
Confidence 3556666666653 33333444455678888877763
No 58
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=80.18 E-value=0.32 Score=48.17 Aligned_cols=60 Identities=15% Similarity=0.197 Sum_probs=35.3
Q ss_pred CCCCE-EEEEEEeecCCCc---hhHHHHHHHHhcc--cccc----cccc-cccccccCcceEEEEeeeeeecc
Q 047191 78 GTQPM-NITIFFMHCSKLL---GVMLGRLNYILTR--ITAL----SCLC-QIELYASPSVEVLKLMSDFLLKV 139 (341)
Q Consensus 78 ~~~~i-~l~l~~~~~~~~~---~~~~~wl~~~~~~--l~~L----~~~~-p~~~~~~~~L~~L~L~~~~~l~~ 139 (341)
...+. .|.... ....+. ..+...++.+-.. ++-+ ..++ |..+|....|++|+| .+|.+..
T Consensus 53 ~g~~~~~f~a~~-s~~ads~vl~qLq~i~d~lqkt~~lkl~~~pa~~pt~pi~ifpF~sLr~LEl-rg~~L~~ 123 (1096)
T KOG1859|consen 53 SGAPVDYFRAYV-SDNADSRVLEQLQRILDFLQKTKVLKLLPSPARDPTEPISIFPFRSLRVLEL-RGCDLST 123 (1096)
T ss_pred CCCCCceeEEec-CCcccchHHHHHHHHHHHHhhheeeeecccCCCCCCCCceeccccceeeEEe-cCcchhh
Confidence 34577 887777 433322 2233333333322 2322 1233 888999999999999 8887754
No 59
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=78.68 E-value=1.6 Score=23.21 Aligned_cols=24 Identities=17% Similarity=0.105 Sum_probs=18.8
Q ss_pred CCcccEEEEEEc-CCChhHHHHHHh
Q 047191 302 LSYLQHLEVAVG-AIGWAVLPVILS 325 (341)
Q Consensus 302 f~~L~~L~l~~~-~~~~~~l~~ll~ 325 (341)
+++|++|+|..| ..++.++..+-+
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l~~ 25 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQALAK 25 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHHhc
Confidence 367999999998 788888777643
No 60
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=74.28 E-value=2.4 Score=39.15 Aligned_cols=94 Identities=19% Similarity=0.206 Sum_probs=59.6
Q ss_pred cCCceEEEeeccccCce---eecCCCCeeEEEEEEEeCccccCCCccchHHhhcCCCceEEEEecchhhhccccccCCCC
Q 047191 224 APSLERLHIMSDIFGKF---VVHDLNSLTDVILDIVYGEWSRVDPNRSIQLLQQLNNTTSLTVSYGVLCALDHAYHKWFP 300 (341)
Q Consensus 224 ~p~L~~l~~~~~~~~~~---~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~L~l~~~~~~~~~~~~~~~~~ 300 (341)
.|+|+++.+++.....+ .++++.+++++.++-.... .+ +.+.++++++++.|.|.++.+.++.-. .+.
T Consensus 273 L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~--~v----~~~~f~~ls~L~tL~L~~N~it~~~~~---aF~ 343 (498)
T KOG4237|consen 273 LPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLE--FV----SSGMFQGLSGLKTLSLYDNQITTVAPG---AFQ 343 (498)
T ss_pred cccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHH--HH----HHHhhhccccceeeeecCCeeEEEecc---ccc
Confidence 57788888877655433 3666666666655421111 00 178899999999999999877665211 122
Q ss_pred CCCcccEEEEEEc----CCChhHHHHHHhc
Q 047191 301 ALSYLQHLEVAVG----AIGWAVLPVILSS 326 (341)
Q Consensus 301 ~f~~L~~L~l~~~----~~~~~~l~~ll~~ 326 (341)
....|..|.+..+ +.-.+|+..-+++
T Consensus 344 ~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~ 373 (498)
T KOG4237|consen 344 TLFSLSTLNLLSNPFNCNCRLAWLGEWLRK 373 (498)
T ss_pred ccceeeeeehccCcccCccchHHHHHHHhh
Confidence 4556888888776 3345677776665
No 61
>PF08387 FBD: FBD; InterPro: IPR013596 This region is found in F-box (IPR001810 from INTERPRO) and other domain containing plant proteins; it is repeated in two family members. Its precise function is unknown, but it is thought to be associated with nuclear processes []. In fact, several family members are annotated as being similar to transcription factors.
Probab=74.16 E-value=3.1 Score=26.29 Aligned_cols=35 Identities=20% Similarity=0.186 Sum_probs=28.1
Q ss_pred CCcccEEEEEEc---CCChhHHHHHHhcCCCCCcEEEe
Q 047191 302 LSYLQHLEVAVG---AIGWAVLPVILSSSVHLQSLVLR 336 (341)
Q Consensus 302 f~~L~~L~l~~~---~~~~~~l~~ll~~cp~L~~L~l~ 336 (341)
..+|+.+.+..- ......+..++++++.||++.|.
T Consensus 13 ~s~Lk~v~~~~f~g~~~e~~f~~yil~na~~Lk~m~i~ 50 (51)
T PF08387_consen 13 LSHLKFVEIKGFRGEENELEFAKYILENAPVLKKMTIS 50 (51)
T ss_pred hheeEEEEEEeeeCcHHHHHHHHHHHhhhhhhcEEEEE
Confidence 368999988754 34567888999999999999874
No 62
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=72.55 E-value=1.8 Score=37.53 Aligned_cols=106 Identities=20% Similarity=0.141 Sum_probs=60.7
Q ss_pred CcceEEEEeeeeeeccCCCcccCCchhhhhhhccC---CCcchHHHHHhcCCccceeEEeeeecCCCCceeEEE--eCCC
Q 047191 124 PSVEVLKLMSDFLLKVPAGGTCFPNVKILTMQLES---PDNILTEKLFCSCPSLEELSIQAYLNDEGPTTKFVI--SSST 198 (341)
Q Consensus 124 ~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~~~L~~---~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~l~i--~~~s 198 (341)
..|+.|++ .++.+......-.+|+||+| .+.. ....++.-++..||+|+.|++++-.-..+. .+.- .-.+
T Consensus 43 ~~le~ls~-~n~gltt~~~~P~Lp~LkkL--~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~ls--tl~pl~~l~n 117 (260)
T KOG2739|consen 43 VELELLSV-INVGLTTLTNFPKLPKLKKL--ELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLS--TLRPLKELEN 117 (260)
T ss_pred cchhhhhh-hccceeecccCCCcchhhhh--cccCCcccccccceehhhhCCceeEEeecCCcccccc--ccchhhhhcc
Confidence 34555665 56555433233346788999 8876 455677777888899999999875432112 1110 2245
Q ss_pred cceEEEeeecCccccccCceeEEEecCCceEEEeecc
Q 047191 199 LKQCTLWVETEGEMFTQAEYKVRITAPSLERLHIMSD 235 (341)
Q Consensus 199 L~~L~i~~c~~~~~~~~~~~~~~~~~p~L~~l~~~~~ 235 (341)
|+.|.+..|..... ......+-.-+|+|++++..+.
T Consensus 118 L~~Ldl~n~~~~~l-~dyre~vf~ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 118 LKSLDLFNCSVTNL-DDYREKVFLLLPSLKYLDGCDV 153 (260)
T ss_pred hhhhhcccCCcccc-ccHHHHHHHHhhhhcccccccc
Confidence 77777777632221 1112233334777777776543
No 63
>PRK15386 type III secretion protein GogB; Provisional
Probab=71.67 E-value=6.6 Score=36.91 Aligned_cols=56 Identities=13% Similarity=0.036 Sum_probs=31.3
Q ss_pred HhcCCccceeEEeeeecCCCCceeEEEeCCCcceEEEeeecCccccccCceeEE-EecCCceEEEeecc
Q 047191 168 FCSCPSLEELSIQAYLNDEGPTTKFVISSSTLKQCTLWVETEGEMFTQAEYKVR-ITAPSLERLHIMSD 235 (341)
Q Consensus 168 l~~cp~Le~L~L~~c~~~~~~~~~l~i~~~sL~~L~i~~c~~~~~~~~~~~~~~-~~~p~L~~l~~~~~ 235 (341)
+..|+.++.|.+.+|.- . .+..-.++|++|.+.+|..- ..+. .-.++|++|.+.++
T Consensus 48 ~~~~~~l~~L~Is~c~L---~--sLP~LP~sLtsL~Lsnc~nL-------tsLP~~LP~nLe~L~Ls~C 104 (426)
T PRK15386 48 IEEARASGRLYIKDCDI---E--SLPVLPNELTEITIENCNNL-------TTLPGSIPEGLEKLTVCHC 104 (426)
T ss_pred HHHhcCCCEEEeCCCCC---c--ccCCCCCCCcEEEccCCCCc-------ccCCchhhhhhhheEccCc
Confidence 44578888888888832 2 22222235888888775321 1111 11346777777664
No 64
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=71.12 E-value=1.4 Score=45.76 Aligned_cols=15 Identities=20% Similarity=0.264 Sum_probs=11.4
Q ss_pred CCCCCcccEEEEEEc
Q 047191 299 FPALSYLQHLEVAVG 313 (341)
Q Consensus 299 ~~~f~~L~~L~l~~~ 313 (341)
.+.+.+|+.|.|..+
T Consensus 713 ~~~l~~L~~L~i~~~ 727 (889)
T KOG4658|consen 713 LGSLGNLEELSILDC 727 (889)
T ss_pred cccccCcceEEEEcC
Confidence 346778888888887
No 65
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=70.54 E-value=0.82 Score=46.52 Aligned_cols=37 Identities=22% Similarity=0.327 Sum_probs=27.0
Q ss_pred CCCCCcccEEEEEEcCCChhHHHHHHhcCCCCCcEEEee
Q 047191 299 FPALSYLQHLEVAVGAIGWAVLPVILSSSVHLQSLVLRK 337 (341)
Q Consensus 299 ~~~f~~L~~L~l~~~~~~~~~l~~ll~~cp~L~~L~l~~ 337 (341)
.|.-.||+.++++.+ ....+...+..|++|+.|.+..
T Consensus 237 ~p~p~nl~~~dis~n--~l~~lp~wi~~~~nle~l~~n~ 273 (1081)
T KOG0618|consen 237 HPVPLNLQYLDISHN--NLSNLPEWIGACANLEALNANH 273 (1081)
T ss_pred ccccccceeeecchh--hhhcchHHHHhcccceEecccc
Confidence 445568888888875 3344557888999999987654
No 66
>PLN03150 hypothetical protein; Provisional
Probab=69.08 E-value=2.7 Score=42.03 Aligned_cols=79 Identities=15% Similarity=0.074 Sum_probs=51.6
Q ss_pred cceEEEEeeeeeec--cCCCcccCCchhhhhhhccC-CCcchHHHHHhcCCccceeEEeeeecCCCCceeEEEeCCCcce
Q 047191 125 SVEVLKLMSDFLLK--VPAGGTCFPNVKILTMQLES-PDNILTEKLFCSCPSLEELSIQAYLNDEGPTTKFVISSSTLKQ 201 (341)
Q Consensus 125 ~L~~L~L~~~~~l~--~~~~~~~~~~L~~L~~~L~~-~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~l~i~~~sL~~ 201 (341)
.++.|.| .+..+. .++....+++|+.| +|.. --.+.+..-+..++.|+.|+|.++.-.+.- |..--..++|+.
T Consensus 419 ~v~~L~L-~~n~L~g~ip~~i~~L~~L~~L--~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~i-P~~l~~L~~L~~ 494 (623)
T PLN03150 419 FIDGLGL-DNQGLRGFIPNDISKLRHLQSI--NLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI-PESLGQLTSLRI 494 (623)
T ss_pred EEEEEEC-CCCCccccCCHHHhCCCCCCEE--ECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCC-chHHhcCCCCCE
Confidence 3778888 666553 23244568999999 8887 222334444788999999999988554211 011224578999
Q ss_pred EEEeee
Q 047191 202 CTLWVE 207 (341)
Q Consensus 202 L~i~~c 207 (341)
|++.++
T Consensus 495 L~Ls~N 500 (623)
T PLN03150 495 LNLNGN 500 (623)
T ss_pred EECcCC
Confidence 999884
No 67
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=67.72 E-value=0.93 Score=39.83 Aligned_cols=64 Identities=17% Similarity=0.129 Sum_probs=47.0
Q ss_pred hHHhhcCCCceEEEEecchhhhccccccCCCCCCCcccEEEEEEcCCChhHHHHHHhcCCCCCcEEEee
Q 047191 269 IQLLQQLNNTTSLTVSYGVLCALDHAYHKWFPALSYLQHLEVAVGAIGWAVLPVILSSSVHLQSLVLRK 337 (341)
Q Consensus 269 ~~~l~~~~~l~~L~l~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~~~~~l~~ll~~cp~L~~L~l~~ 337 (341)
..+...++.++.|+|+-+.+..+. .+..+.+|++|+|.-+.+..-.-...|++.|+|++|+|..
T Consensus 34 Isic~kMp~lEVLsLSvNkIssL~-----pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~E 97 (388)
T KOG2123|consen 34 ISICEKMPLLEVLSLSVNKISSLA-----PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDE 97 (388)
T ss_pred HHHHHhcccceeEEeeccccccch-----hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhcc
Confidence 777788999999999977654431 1225678999999987443333355699999999999863
No 68
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=63.45 E-value=3.8 Score=34.33 Aligned_cols=25 Identities=28% Similarity=0.313 Sum_probs=11.5
Q ss_pred CCcchHHHHHhcCCccceeEEeeee
Q 047191 159 PDNILTEKLFCSCPSLEELSIQAYL 183 (341)
Q Consensus 159 ~~~~~l~~ll~~cp~Le~L~L~~c~ 183 (341)
+++..++.+-.-.|+||.|.|++|.
T Consensus 138 ~dD~~L~~l~~~~~~L~~L~lsgC~ 162 (221)
T KOG3864|consen 138 FDDWCLERLGGLAPSLQDLDLSGCP 162 (221)
T ss_pred hhhHHHHHhcccccchheeeccCCC
Confidence 4444444444444444444444443
No 69
>PLN03150 hypothetical protein; Provisional
Probab=60.71 E-value=5.3 Score=39.95 Aligned_cols=80 Identities=13% Similarity=0.004 Sum_probs=42.6
Q ss_pred chhhhhhhccC--CCcchHHHHHhcCCccceeEEeeeecCC-CCceeEEEeCCCcceEEEeeecCccccccCceeEEEec
Q 047191 148 NVKILTMQLES--PDNILTEKLFCSCPSLEELSIQAYLNDE-GPTTKFVISSSTLKQCTLWVETEGEMFTQAEYKVRITA 224 (341)
Q Consensus 148 ~L~~L~~~L~~--~~~~~l~~ll~~cp~Le~L~L~~c~~~~-~~~~~l~i~~~sL~~L~i~~c~~~~~~~~~~~~~~~~~ 224 (341)
.++.| .|.+ +. +.+..-+..+++|+.|+|.++.-.+ ++ ..--..++|+.|++..+.-.+ ......-..
T Consensus 419 ~v~~L--~L~~n~L~-g~ip~~i~~L~~L~~L~Ls~N~l~g~iP--~~~~~l~~L~~LdLs~N~lsg----~iP~~l~~L 489 (623)
T PLN03150 419 FIDGL--GLDNQGLR-GFIPNDISKLRHLQSINLSGNSIRGNIP--PSLGSITSLEVLDLSYNSFNG----SIPESLGQL 489 (623)
T ss_pred EEEEE--ECCCCCcc-ccCCHHHhCCCCCCEEECCCCcccCcCC--hHHhCCCCCCEEECCCCCCCC----CCchHHhcC
Confidence 35666 6666 22 2233346677888888887764432 11 112244677778777732111 111112246
Q ss_pred CCceEEEeeccc
Q 047191 225 PSLERLHIMSDI 236 (341)
Q Consensus 225 p~L~~l~~~~~~ 236 (341)
++|+.|.+.+..
T Consensus 490 ~~L~~L~Ls~N~ 501 (623)
T PLN03150 490 TSLRILNLNGNS 501 (623)
T ss_pred CCCCEEECcCCc
Confidence 778888776643
No 70
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=60.64 E-value=3.6 Score=21.15 Aligned_cols=13 Identities=31% Similarity=0.473 Sum_probs=6.6
Q ss_pred CCccceeEEeeee
Q 047191 171 CPSLEELSIQAYL 183 (341)
Q Consensus 171 cp~Le~L~L~~c~ 183 (341)
||+|++|+|.+|.
T Consensus 1 ~~~L~~L~l~~n~ 13 (24)
T PF13516_consen 1 NPNLETLDLSNNQ 13 (24)
T ss_dssp -TT-SEEE-TSSB
T ss_pred CCCCCEEEccCCc
Confidence 5667777776653
No 71
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=58.96 E-value=1.6 Score=35.62 Aligned_cols=11 Identities=36% Similarity=0.567 Sum_probs=5.6
Q ss_pred CCccceeEEee
Q 047191 171 CPSLEELSIQA 181 (341)
Q Consensus 171 cp~Le~L~L~~ 181 (341)
+|.||-|++.+
T Consensus 101 ~p~levldlty 111 (264)
T KOG0617|consen 101 FPALEVLDLTY 111 (264)
T ss_pred Cchhhhhhccc
Confidence 45555555544
No 72
>smart00579 FBD domain in FBox and BRCT domain containing plant proteins.
Probab=57.44 E-value=9.4 Score=25.89 Aligned_cols=33 Identities=18% Similarity=0.164 Sum_probs=18.7
Q ss_pred cccEEEEEEc---CCChhHHHHHHhcCCCCCcEEEe
Q 047191 304 YLQHLEVAVG---AIGWAVLPVILSSSVHLQSLVLR 336 (341)
Q Consensus 304 ~L~~L~l~~~---~~~~~~l~~ll~~cp~L~~L~l~ 336 (341)
+|+.+.+..- ....+.+..|++++|.||++.|.
T Consensus 6 ~Lk~v~i~~f~g~~~e~~~~~~il~~a~~Lk~~~i~ 41 (72)
T smart00579 6 SLEVLEIKGYRGTEEEKELVKYFLENAPCLKKLTIS 41 (72)
T ss_pred eEEEEEEEeccCcHHHHHHHHHHHhcchhheEEEEE
Confidence 4555555543 22344566666677777666654
No 73
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=54.67 E-value=3.4 Score=35.95 Aligned_cols=49 Identities=20% Similarity=0.397 Sum_probs=37.2
Q ss_pred ccCCCChHHHHHHHcCCCh-hhhhhhhccccch------HHhhccCceeEeecCCC
Q 047191 6 RINALPDSVLCHILSYLPT-KNVVATSILARRW------KLVWTSLQKLYFDDRQS 54 (341)
Q Consensus 6 ~is~LPd~iL~~Ils~Lp~-~~~~~~s~vskrW------r~lw~~~~~l~~~~~~~ 54 (341)
.+.+||.+++.+|+.+|+- +|++.++.+--.- +++|+.+-...|.+...
T Consensus 201 tl~dLP~e~vl~Il~rlsDh~dL~s~aqa~etl~~l~~e~~iWkkLcqfHF~erQi 256 (332)
T KOG3926|consen 201 TLHDLPLECVLNILLRLSDHRDLESLAQAWETLAKLSEERRIWKKLCQFHFNERQI 256 (332)
T ss_pred CcccchHHHHHHHHHHccCcchHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 4789999999999999984 8988888763332 46788777667666443
No 74
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=52.15 E-value=3.7 Score=42.69 Aligned_cols=66 Identities=18% Similarity=0.080 Sum_probs=34.5
Q ss_pred hHHhhcCCCceEEEEecchhh-hcccc-ccCCCC-CCCcccEEEEEEc-C-CChhHHHHHHhcCCCCCcEEEeee
Q 047191 269 IQLLQQLNNTTSLTVSYGVLC-ALDHA-YHKWFP-ALSYLQHLEVAVG-A-IGWAVLPVILSSSVHLQSLVLRKV 338 (341)
Q Consensus 269 ~~~l~~~~~l~~L~l~~~~~~-~~~~~-~~~~~~-~f~~L~~L~l~~~-~-~~~~~l~~ll~~cp~L~~L~l~~~ 338 (341)
...+..+.+++.|++...... ..... .-.... .|+++.++.+..+ . -... .+.-.|+|+.|.+...
T Consensus 710 ~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~----~~~f~~~L~~l~l~~~ 780 (889)
T KOG4658|consen 710 ISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLT----WLLFAPHLTSLSLVSC 780 (889)
T ss_pred ecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccc----hhhccCcccEEEEecc
Confidence 455667788888888765432 11101 000111 2667777666655 1 1111 1244588888887653
No 75
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=49.49 E-value=8.1 Score=18.16 Aligned_cols=11 Identities=18% Similarity=0.268 Sum_probs=4.6
Q ss_pred ccceeEEeeee
Q 047191 173 SLEELSIQAYL 183 (341)
Q Consensus 173 ~Le~L~L~~c~ 183 (341)
+|+.|.|.+|.
T Consensus 2 ~L~~L~l~~n~ 12 (17)
T PF13504_consen 2 NLRTLDLSNNR 12 (17)
T ss_dssp T-SEEEETSS-
T ss_pred ccCEEECCCCC
Confidence 45555555543
No 76
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=46.63 E-value=1 Score=42.44 Aligned_cols=77 Identities=22% Similarity=0.149 Sum_probs=43.8
Q ss_pred ccccCcceEEEEeeeeeeccCCC-cccCCchhhhhhhccC--CCc-chHHHHHhcCCccceeEEeeeecCCCCceeEEEe
Q 047191 120 LYASPSVEVLKLMSDFLLKVPAG-GTCFPNVKILTMQLES--PDN-ILTEKLFCSCPSLEELSIQAYLNDEGPTTKFVIS 195 (341)
Q Consensus 120 ~~~~~~L~~L~L~~~~~l~~~~~-~~~~~~L~~L~~~L~~--~~~-~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~l~i~ 195 (341)
+....+|+.|.+ ++-.+..... ..++++|+.| .|.. ++. .++.. ++.|+.|++.+..-.... .+. .
T Consensus 91 l~~~~~l~~l~l-~~n~i~~i~~~l~~~~~L~~L--~ls~N~I~~i~~l~~----l~~L~~L~l~~N~i~~~~--~~~-~ 160 (414)
T KOG0531|consen 91 LSKLKSLEALDL-YDNKIEKIENLLSSLVNLQVL--DLSFNKITKLEGLST----LTLLKELNLSGNLISDIS--GLE-S 160 (414)
T ss_pred cccccceeeeec-cccchhhcccchhhhhcchhe--eccccccccccchhh----ccchhhheeccCcchhcc--CCc-c
Confidence 444677888888 6555544424 4567888888 7766 332 44443 444888888776443222 111 1
Q ss_pred CCCcceEEEee
Q 047191 196 SSTLKQCTLWV 206 (341)
Q Consensus 196 ~~sL~~L~i~~ 206 (341)
.+.|+.+.+..
T Consensus 161 l~~L~~l~l~~ 171 (414)
T KOG0531|consen 161 LKSLKLLDLSY 171 (414)
T ss_pred chhhhcccCCc
Confidence 44555665555
No 77
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=46.02 E-value=4.2 Score=37.77 Aligned_cols=85 Identities=18% Similarity=0.051 Sum_probs=43.5
Q ss_pred cccccccCcceEEEEeeeeeeccCCCcccCCchhhhhhhccCCCcchH-HHHHhcCCccceeEEeeeecCCCCceeEEEe
Q 047191 117 QIELYASPSVEVLKLMSDFLLKVPAGGTCFPNVKILTMQLESPDNILT-EKLFCSCPSLEELSIQAYLNDEGPTTKFVIS 195 (341)
Q Consensus 117 p~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~~~L~~~~~~~l-~~ll~~cp~Le~L~L~~c~~~~~~~~~l~i~ 195 (341)
|..+....+|..|+| +.-.+...|.+.++..|+.| ++..=.-+.+ .++.+..+.|..|++++-.-..++ .-.+-
T Consensus 199 P~~lg~l~~L~~LyL-~~Nki~~lPef~gcs~L~El--h~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~P--de~cl 273 (565)
T KOG0472|consen 199 PPELGGLESLELLYL-RRNKIRFLPEFPGCSLLKEL--HVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVP--DEICL 273 (565)
T ss_pred ChhhcchhhhHHHHh-hhcccccCCCCCccHHHHHH--HhcccHHHhhHHHHhcccccceeeeccccccccCc--hHHHH
Confidence 666666677777777 55444443366667777777 6544000111 122334555666666554332222 22223
Q ss_pred CCCcceEEEee
Q 047191 196 SSTLKQCTLWV 206 (341)
Q Consensus 196 ~~sL~~L~i~~ 206 (341)
-.+|.+|++++
T Consensus 274 LrsL~rLDlSN 284 (565)
T KOG0472|consen 274 LRSLERLDLSN 284 (565)
T ss_pred hhhhhhhcccC
Confidence 34566666665
No 78
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=45.14 E-value=13 Score=18.62 Aligned_cols=15 Identities=33% Similarity=0.233 Sum_probs=10.7
Q ss_pred cceEEEEeeeeeeccC
Q 047191 125 SVEVLKLMSDFLLKVP 140 (341)
Q Consensus 125 ~L~~L~L~~~~~l~~~ 140 (341)
+|++|+| +++.+...
T Consensus 1 ~L~~Ldl-s~n~l~~i 15 (22)
T PF00560_consen 1 NLEYLDL-SGNNLTSI 15 (22)
T ss_dssp TESEEEE-TSSEESEE
T ss_pred CccEEEC-CCCcCEeC
Confidence 4789999 76676543
No 79
>KOG4408 consensus Putative Mg2+ and Co2+ transporter CorD [Inorganic ion transport and metabolism]
Probab=43.51 E-value=6.3 Score=35.41 Aligned_cols=39 Identities=26% Similarity=0.423 Sum_probs=34.1
Q ss_pred cCCCChHHHHHHHcCCChhhhhhhhccccchHHhhccCc
Q 047191 7 INALPDSVLCHILSYLPTKNVVATSILARRWKLVWTSLQ 45 (341)
Q Consensus 7 is~LPd~iL~~Ils~Lp~~~~~~~s~vskrWr~lw~~~~ 45 (341)
+..+|+++++.|++++.-+++++++.+++|-..+-+..|
T Consensus 8 le~~~~~~l~~vls~~~~~~~~~~a~vs~rLk~~~s~~~ 46 (386)
T KOG4408|consen 8 LEWLPRDPLHLVLSFLLYRDLINCAYVSRRLKELGSHLP 46 (386)
T ss_pred hhhcccccceeeecccchhhhhcceeechHHhhhhhccc
Confidence 346999999999999999999999999999987755554
No 80
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=37.25 E-value=6.1 Score=36.80 Aligned_cols=172 Identities=19% Similarity=0.135 Sum_probs=85.3
Q ss_pred cccCCchhhhhhhccCCCcchHHHHHhcC-CccceeEEeeeecCCCCceeEEEeCCCcceEEEeeecCccccccCceeEE
Q 047191 143 GTCFPNVKILTMQLESPDNILTEKLFCSC-PSLEELSIQAYLNDEGPTTKFVISSSTLKQCTLWVETEGEMFTQAEYKVR 221 (341)
Q Consensus 143 ~~~~~~L~~L~~~L~~~~~~~l~~ll~~c-p~Le~L~L~~c~~~~~~~~~l~i~~~sL~~L~i~~c~~~~~~~~~~~~~~ 221 (341)
...++.++.| .+....-..+....... ++|+.|++.+-.-.... .-.-..+.|+.|.+..+.-.. .....
T Consensus 112 ~~~~~~l~~L--~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~--~~~~~l~~L~~L~l~~N~l~~-----l~~~~ 182 (394)
T COG4886 112 LLELTNLTSL--DLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLP--SPLRNLPNLKNLDLSFNDLSD-----LPKLL 182 (394)
T ss_pred hhcccceeEE--ecCCcccccCccccccchhhcccccccccchhhhh--hhhhccccccccccCCchhhh-----hhhhh
Confidence 3345677777 77763333333333333 47888887775432110 001244678888888742111 11111
Q ss_pred EecCCceEEEeeccccCceeec--CCCCeeEEEEEEEeCccccCCCccchHHhhcCCCceEEEEecchhhhccccccCCC
Q 047191 222 ITAPSLERLHIMSDIFGKFVVH--DLNSLTDVILDIVYGEWSRVDPNRSIQLLQQLNNTTSLTVSYGVLCALDHAYHKWF 299 (341)
Q Consensus 222 ~~~p~L~~l~~~~~~~~~~~~~--~~~~L~~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~L~l~~~~~~~~~~~~~~~~ 299 (341)
...++|+.+.+++.....+... ....|+++.+....... ....+..+.++..|.+..+.+..+ ....
T Consensus 183 ~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~-------~~~~~~~~~~l~~l~l~~n~~~~~----~~~~ 251 (394)
T COG4886 183 SNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIE-------LLSSLSNLKNLSGLELSNNKLEDL----PESI 251 (394)
T ss_pred hhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCccee-------cchhhhhcccccccccCCceeeec----cchh
Confidence 1678888888887655443221 22225554443210000 023334445555554433322110 1122
Q ss_pred CCCCcccEEEEEEc-CCChhHHHHHHhcCCCCCcEEEeee
Q 047191 300 PALSYLQHLEVAVG-AIGWAVLPVILSSSVHLQSLVLRKV 338 (341)
Q Consensus 300 ~~f~~L~~L~l~~~-~~~~~~l~~ll~~cp~L~~L~l~~~ 338 (341)
...++|+.|++..+ ...... +....+|+.|++.+-
T Consensus 252 ~~l~~l~~L~~s~n~i~~i~~----~~~~~~l~~L~~s~n 287 (394)
T COG4886 252 GNLSNLETLDLSNNQISSISS----LGSLTNLRELDLSGN 287 (394)
T ss_pred ccccccceecccccccccccc----ccccCccCEEeccCc
Confidence 35667888888776 222222 666788888887663
No 81
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=37.23 E-value=13 Score=35.11 Aligned_cols=56 Identities=20% Similarity=0.210 Sum_probs=23.5
Q ss_pred CCCceEEEEecchhhhccccccCCCCCCCcccEEEEEEc-CCChhHHHHHHhcCCCCCcEEEee
Q 047191 275 LNNTTSLTVSYGVLCALDHAYHKWFPALSYLQHLEVAVG-AIGWAVLPVILSSSVHLQSLVLRK 337 (341)
Q Consensus 275 ~~~l~~L~l~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~-~~~~~~l~~ll~~cp~L~~L~l~~ 337 (341)
++.++.|.+..+.+..+. .+..+.+|+.+++.++ ....+.. . ++.+++|+.+.+.+
T Consensus 139 l~~L~~L~l~~N~i~~~~-----~~~~l~~L~~l~l~~n~i~~ie~~-~-~~~~~~l~~l~l~~ 195 (414)
T KOG0531|consen 139 LTLLKELNLSGNLISDIS-----GLESLKSLKLLDLSYNRIVDIEND-E-LSELISLEELDLGG 195 (414)
T ss_pred ccchhhheeccCcchhcc-----CCccchhhhcccCCcchhhhhhhh-h-hhhccchHHHhccC
Confidence 344555555554433221 1122445555555554 1111110 1 45555555555543
No 82
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=37.13 E-value=7.3 Score=36.25 Aligned_cols=22 Identities=27% Similarity=0.386 Sum_probs=10.7
Q ss_pred ChhHHHHHHhcCCCCCcEEEee
Q 047191 316 GWAVLPVILSSSVHLQSLVLRK 337 (341)
Q Consensus 316 ~~~~l~~ll~~cp~L~~L~l~~ 337 (341)
+...+...+++|.+|+.|++.|
T Consensus 516 dlq~IPp~LgnmtnL~hLeL~g 537 (565)
T KOG0472|consen 516 DLQQIPPILGNMTNLRHLELDG 537 (565)
T ss_pred chhhCChhhccccceeEEEecC
Confidence 3344444555555555555543
No 83
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=32.20 E-value=16 Score=28.84 Aligned_cols=60 Identities=23% Similarity=0.245 Sum_probs=42.8
Q ss_pred ccccCcceEEEEeeeeeeccCC-Ccc-cCCchhhhhhhccC--CCcchHHHHHhcCCccceeEEeeeec
Q 047191 120 LYASPSVEVLKLMSDFLLKVPA-GGT-CFPNVKILTMQLES--PDNILTEKLFCSCPSLEELSIQAYLN 184 (341)
Q Consensus 120 ~~~~~~L~~L~L~~~~~l~~~~-~~~-~~~~L~~L~~~L~~--~~~~~l~~ll~~cp~Le~L~L~~c~~ 184 (341)
+.....|+..+| ++-.++.+| ..+ .||.+++| +|.+ +.+--.+ ++.-|.|+.|++++-.-
T Consensus 49 l~~~~el~~i~l-s~N~fk~fp~kft~kf~t~t~l--Nl~~neisdvPeE--~Aam~aLr~lNl~~N~l 112 (177)
T KOG4579|consen 49 LSKGYELTKISL-SDNGFKKFPKKFTIKFPTATTL--NLANNEISDVPEE--LAAMPALRSLNLRFNPL 112 (177)
T ss_pred HhCCceEEEEec-ccchhhhCCHHHhhccchhhhh--hcchhhhhhchHH--HhhhHHhhhcccccCcc
Confidence 344566777788 777776554 333 47899999 9988 5554444 78899999999988654
No 84
>COG4829 CatC1 Muconolactone delta-isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=31.27 E-value=10 Score=26.70 Aligned_cols=36 Identities=14% Similarity=0.266 Sum_probs=25.8
Q ss_pred CChHHHHHHHcCCChhhhhhhhccc--cchHHhhccCc
Q 047191 10 LPDSVLCHILSYLPTKNVVATSILA--RRWKLVWTSLQ 45 (341)
Q Consensus 10 LPd~iL~~Ils~Lp~~~~~~~s~vs--krWr~lw~~~~ 45 (341)
+||+.=.....++-.+|.++..-+- -.|+++||...
T Consensus 11 ~PdsMdad~~er~~A~Eka~s~~Lq~~G~~~~lWR~~G 48 (98)
T COG4829 11 VPDSMDADAVERVRAREKARSRELQAQGKLLRLWRRPG 48 (98)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHhcchHHHHHhccc
Confidence 5666666677777888888877554 45999999443
No 85
>PF08004 DUF1699: Protein of unknown function (DUF1699); InterPro: IPR012546 This family contains many archaeal proteins which have very conserved sequences.
Probab=30.58 E-value=78 Score=24.25 Aligned_cols=21 Identities=5% Similarity=0.061 Sum_probs=16.2
Q ss_pred CChhHHHHHHhcCCCCCcEEE
Q 047191 315 IGWAVLPVILSSSVHLQSLVL 335 (341)
Q Consensus 315 ~~~~~l~~ll~~cp~L~~L~l 335 (341)
++-..+..+++.||+||.+.+
T Consensus 28 PSN~Dif~Lv~~CP~lk~iqi 48 (131)
T PF08004_consen 28 PSNKDIFSLVERCPNLKAIQI 48 (131)
T ss_pred CcchHHHHHHHhCCCCeEEeC
Confidence 344567889999999998875
No 86
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=27.17 E-value=40 Score=31.51 Aligned_cols=67 Identities=18% Similarity=0.220 Sum_probs=39.7
Q ss_pred hHHhhcCCCceEEEEecchhhhccccccCCCCCCCcccEEEEEEcCCChhHH-HHHHhcCCCCCcEEEeeeee
Q 047191 269 IQLLQQLNNTTSLTVSYGVLCALDHAYHKWFPALSYLQHLEVAVGAIGWAVL-PVILSSSVHLQSLVLRKVII 340 (341)
Q Consensus 269 ~~~l~~~~~l~~L~l~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~~~~~l-~~ll~~cp~L~~L~l~~~~~ 340 (341)
.+-+..+++++.|.++.+.+.-+... ++-....+++|.|..+ ..+.+ ...+++..+|+.|++.+=.|
T Consensus 267 ~~cf~~L~~L~~lnlsnN~i~~i~~~---aFe~~a~l~eL~L~~N--~l~~v~~~~f~~ls~L~tL~L~~N~i 334 (498)
T KOG4237|consen 267 AKCFKKLPNLRKLNLSNNKITRIEDG---AFEGAAELQELYLTRN--KLEFVSSGMFQGLSGLKTLSLYDNQI 334 (498)
T ss_pred HHHHhhcccceEeccCCCccchhhhh---hhcchhhhhhhhcCcc--hHHHHHHHhhhccccceeeeecCCee
Confidence 56677888888888887765543211 1223445677777664 22222 23567777788887766433
No 87
>PF06881 Elongin_A: RNA polymerase II transcription factor SIII (Elongin) subunit A; InterPro: IPR010684 This family represents a conserved region within RNA polymerase II transcription factor SIII (Elongin) subunit A. In mammals, the Elongin complex activates elongation by RNA polymerase II by suppressing transient pausing of the polymerase at many sites within transcription units. Elongin is a heterotrimer composed of A, B, and C subunits of 110, 18, and 15 kilodaltons, respectively. Subunit A has been shown to function as the transcriptionally active component of Elongin [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus, 0016021 integral to membrane
Probab=23.89 E-value=82 Score=23.40 Aligned_cols=29 Identities=14% Similarity=0.123 Sum_probs=25.1
Q ss_pred ccCCCChHHHHHHHcCCChhhhhhhhccc
Q 047191 6 RINALPDSVLCHILSYLPTKNVVATSILA 34 (341)
Q Consensus 6 ~is~LPd~iL~~Ils~Lp~~~~~~~s~vs 34 (341)
-++++|.+++..||...+++++.+.-.-|
T Consensus 3 dvG~~py~ll~piL~~~~~~QL~~iE~~n 31 (109)
T PF06881_consen 3 DVGDVPYHLLRPILEKCSPEQLRRIEDNN 31 (109)
T ss_pred ccCCCCHHHHHHHHccCCHHHHHHHHHhC
Confidence 46789999999999999999998876555
No 88
>PF00220 Hormone_4: Neurohypophysial hormones, N-terminal Domain; InterPro: IPR022423 Oxytocin (or ocytocin) and vasopressin [] are small (nine amino acid residues), structurally and functionally related neurohypophysial peptide hormones. Oxytocin causes contraction of the smooth muscle of the uterus and of the mammary gland while vasopressin has a direct antidiuretic action on the kidney and also causes vasoconstriction of the peripheral vessels. Like the majority of active peptides, both hormones are synthesized as larger protein precursors that are enzymatically converted to their mature forms. Peptides belonging to this family are also found in birds, fish, reptiles and amphibians (mesotocin, isotocin, valitocin, glumitocin, aspargtocin, vasotocin, seritocin, asvatocin, phasvatocin), in worms (annetocin), octopi (cephalotocin), locust (locupressin or neuropeptide F1/F2) and in molluscs (conopressins G and S) []. The pattern developed to detect this category of peptides spans their entire sequence and includes four invariant amino acid residues. .; GO: 0005185 neurohypophyseal hormone activity, 0005576 extracellular region
Probab=20.40 E-value=25 Score=13.75 Aligned_cols=6 Identities=0% Similarity=0.063 Sum_probs=4.0
Q ss_pred HHhcCC
Q 047191 323 ILSSSV 328 (341)
Q Consensus 323 ll~~cp 328 (341)
++++||
T Consensus 2 ~i~nCP 7 (9)
T PF00220_consen 2 YIRNCP 7 (9)
T ss_pred ccccCC
Confidence 466777
Done!