Query 047191
Match_columns 341
No_of_seqs 133 out of 1381
Neff 9.6
Searched_HMMs 29240
Date Mon Mar 25 14:59:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047191.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047191hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2p1m_B Transport inhibitor res 99.8 2.4E-20 8.2E-25 181.8 0.0 162 3-183 2-195 (594)
2 3ogk_B Coronatine-insensitive 99.8 2.8E-19 9.7E-24 174.2 7.6 41 4-44 6-51 (592)
3 2ast_B S-phase kinase-associat 99.7 3E-19 1E-23 161.8 0.2 271 4-331 6-299 (336)
4 3ogk_B Coronatine-insensitive 98.9 3.8E-10 1.3E-14 109.6 2.2 185 145-340 316-525 (592)
5 1fs1_A SKP2 F-BOX, cyclin A/CD 98.9 1.4E-09 4.8E-14 70.0 3.4 39 4-42 6-44 (53)
6 2ast_B S-phase kinase-associat 98.8 9.4E-11 3.2E-15 105.7 -4.5 225 100-338 38-282 (336)
7 4fcg_A Uncharacterized protein 98.7 8.1E-09 2.8E-13 93.0 3.3 200 117-336 97-309 (328)
8 2z80_A TOLL-like receptor 2, v 98.6 3.2E-08 1.1E-12 89.8 6.3 204 119-337 71-286 (353)
9 4fmz_A Internalin; leucine ric 98.6 1.1E-08 3.9E-13 92.4 3.3 100 224-340 198-299 (347)
10 2p1m_B Transport inhibitor res 98.6 2.4E-09 8.3E-14 103.9 -2.2 58 145-206 287-347 (594)
11 4fmz_A Internalin; leucine ric 98.6 1.4E-08 4.7E-13 91.8 2.7 119 120-253 128-250 (347)
12 4fcg_A Uncharacterized protein 98.5 4.1E-08 1.4E-12 88.3 4.4 197 123-337 80-286 (328)
13 1h6u_A Internalin H; cell adhe 98.5 2.7E-08 9.2E-13 88.7 3.1 186 123-340 40-229 (308)
14 2z81_A CD282 antigen, TOLL-lik 98.5 3.8E-07 1.3E-11 87.6 10.3 210 117-339 43-262 (549)
15 1o6v_A Internalin A; bacterial 98.5 6.3E-08 2.1E-12 91.3 4.1 188 120-340 86-277 (466)
16 2ra8_A Uncharacterized protein 98.5 5.3E-08 1.8E-12 88.7 3.3 164 145-340 137-319 (362)
17 3o6n_A APL1; leucine-rich repe 98.5 3.7E-08 1.3E-12 90.6 1.8 103 225-339 226-329 (390)
18 1o6v_A Internalin A; bacterial 98.4 1.2E-07 4E-12 89.5 4.7 188 120-340 108-299 (466)
19 1ozn_A Reticulon 4 receptor; N 98.4 5.1E-08 1.7E-12 85.7 0.5 195 124-337 32-234 (285)
20 3bz5_A Internalin-J, INLJ; leu 98.4 7.3E-08 2.5E-12 90.7 1.5 179 120-338 60-243 (457)
21 2ca6_A RAN GTPase-activating p 98.3 1.2E-08 4.1E-13 93.8 -4.9 210 120-340 56-315 (386)
22 3zyi_A Leucine-rich repeat-con 98.3 5.9E-08 2E-12 91.1 -0.7 39 272-313 262-300 (452)
23 3o53_A Protein LRIM1, AGAP0063 98.3 1.5E-07 5.2E-12 84.1 1.9 54 124-183 34-91 (317)
24 3bz5_A Internalin-J, INLJ; leu 98.3 2.5E-07 8.5E-12 87.1 3.4 179 120-336 81-262 (457)
25 3oja_B Anopheles plasmodium-re 98.3 1.1E-07 3.9E-12 92.4 0.9 102 226-339 233-335 (597)
26 3oja_A Leucine-rich immune mol 98.3 2.5E-07 8.5E-12 87.8 3.1 162 123-313 33-201 (487)
27 2z66_A Variable lymphocyte rec 98.3 4.7E-08 1.6E-12 86.8 -2.1 122 124-253 28-157 (306)
28 2id5_A Lingo-1, leucine rich r 98.3 1.8E-07 6.1E-12 88.4 1.6 101 226-337 225-329 (477)
29 1h6t_A Internalin B; cell adhe 98.3 5.2E-07 1.8E-11 79.6 4.4 117 122-253 44-163 (291)
30 2id5_A Lingo-1, leucine rich r 98.3 1E-06 3.6E-11 83.1 6.5 155 117-286 49-210 (477)
31 3t6q_A CD180 antigen; protein- 98.2 5E-08 1.7E-12 94.9 -3.0 60 120-183 274-336 (606)
32 2z80_A TOLL-like receptor 2, v 98.2 3E-07 1E-11 83.3 2.2 198 124-340 52-261 (353)
33 3zyj_A Leucine-rich repeat-con 98.2 2.3E-07 7.7E-12 86.8 1.2 185 119-326 107-306 (440)
34 3v47_A TOLL-like receptor 5B a 98.2 9.1E-08 3.1E-12 89.7 -1.8 64 270-337 341-404 (455)
35 1m9s_A Internalin B; cell inva 98.2 5.8E-07 2E-11 87.4 3.3 117 122-253 41-160 (605)
36 3rfs_A Internalin B, repeat mo 98.2 4.6E-07 1.6E-11 79.0 2.2 172 122-313 39-215 (272)
37 3t6q_A CD180 antigen; protein- 98.2 1.8E-07 6.1E-12 91.0 -0.6 209 117-339 294-511 (606)
38 2ca6_A RAN GTPase-activating p 98.2 2.3E-08 7.9E-13 91.9 -6.9 216 119-340 27-286 (386)
39 3l2o_B F-box only protein 4; s 98.1 6.3E-07 2.2E-11 77.5 2.0 35 6-40 4-38 (312)
40 2e31_A FBS1, F-box only protei 98.1 1.2E-06 4.2E-11 76.5 3.6 36 5-40 49-85 (297)
41 3vq2_A TLR4, TOLL-like recepto 98.1 6.2E-07 2.1E-11 87.2 1.9 205 120-339 281-508 (606)
42 3zyj_A Leucine-rich repeat-con 98.1 3.7E-07 1.3E-11 85.3 0.3 202 118-337 82-288 (440)
43 3o6n_A APL1; leucine-rich repe 98.1 1.9E-06 6.4E-11 79.1 4.9 99 223-337 246-348 (390)
44 1h6u_A Internalin H; cell adhe 98.1 1.6E-06 5.5E-11 77.1 4.3 166 120-313 59-227 (308)
45 3rgz_A Protein brassinosteroid 98.1 5.7E-07 2E-11 90.1 1.2 125 119-254 121-255 (768)
46 3o53_A Protein LRIM1, AGAP0063 98.1 1.1E-07 3.6E-12 85.1 -4.0 61 272-336 210-270 (317)
47 2z63_A TOLL-like receptor 4, v 98.1 3.4E-07 1.2E-11 88.2 -0.8 59 117-183 298-358 (570)
48 1xku_A Decorin; proteoglycan, 98.1 1.8E-06 6.1E-11 77.4 3.9 199 117-337 93-302 (330)
49 3rgz_A Protein brassinosteroid 98.1 1.7E-07 5.9E-12 93.9 -3.3 205 117-338 93-328 (768)
50 2z7x_B TOLL-like receptor 1, v 98.1 5.9E-06 2E-10 78.7 7.3 63 273-338 321-384 (520)
51 2z63_A TOLL-like receptor 4, v 98.1 4.4E-06 1.5E-10 80.4 6.4 206 117-338 275-504 (570)
52 3j0a_A TOLL-like receptor 5; m 98.0 3.9E-06 1.3E-10 85.0 6.1 58 225-288 266-326 (844)
53 3goz_A Leucine-rich repeat-con 98.0 7.5E-08 2.6E-12 87.7 -6.1 204 122-334 48-287 (362)
54 3oja_B Anopheles plasmodium-re 98.0 3.9E-06 1.3E-10 81.6 5.1 99 223-337 252-354 (597)
55 2o6q_A Variable lymphocyte rec 98.0 9.5E-07 3.2E-11 76.9 0.6 172 124-313 37-215 (270)
56 1ogq_A PGIP-2, polygalacturona 98.0 4.3E-07 1.5E-11 81.0 -1.6 63 117-183 94-160 (313)
57 2z7x_B TOLL-like receptor 1, v 98.0 1.5E-05 5.3E-10 75.8 8.7 205 124-340 21-259 (520)
58 3zyi_A Leucine-rich repeat-con 98.0 2.3E-06 7.8E-11 80.2 2.8 203 117-337 92-299 (452)
59 3v47_A TOLL-like receptor 5B a 98.0 4.3E-07 1.5E-11 85.1 -2.2 63 271-337 318-380 (455)
60 2z81_A CD282 antigen, TOLL-lik 98.0 5.1E-06 1.7E-10 79.7 5.1 70 269-338 327-397 (549)
61 4ezg_A Putative uncharacterize 98.0 4.2E-06 1.5E-10 69.1 3.8 55 122-182 42-98 (197)
62 3oja_A Leucine-rich immune mol 97.9 3E-07 1E-11 87.2 -4.1 76 118-206 52-129 (487)
63 3vq2_A TLR4, TOLL-like recepto 97.9 2.8E-07 9.5E-12 89.7 -4.6 36 119-158 302-337 (606)
64 1p9a_G Platelet glycoprotein I 97.9 1.1E-06 3.8E-11 77.4 -0.5 168 124-313 31-205 (290)
65 1ozn_A Reticulon 4 receptor; N 97.9 2.3E-06 8E-11 74.9 1.3 179 118-313 50-235 (285)
66 4ecn_A Leucine-rich repeat pro 97.9 2.2E-06 7.5E-11 86.6 1.1 34 301-336 751-784 (876)
67 1xku_A Decorin; proteoglycan, 97.9 2.8E-06 9.5E-11 76.1 1.6 201 117-337 116-328 (330)
68 3a79_B TLR6, VLRB.59, TOLL-lik 97.9 2.6E-05 8.8E-10 75.1 8.4 62 273-337 350-412 (562)
69 3e4g_A ATP synthase subunit S, 97.9 4.1E-07 1.4E-11 73.5 -3.6 89 117-211 54-153 (176)
70 1xeu_A Internalin C; cellular 97.9 1.6E-05 5.6E-10 68.8 6.3 117 120-252 37-156 (263)
71 3g06_A SSPH2 (leucine-rich rep 97.9 1.3E-05 4.4E-10 78.1 6.1 73 117-206 56-130 (622)
72 1z7x_W Ribonuclease inhibitor; 97.9 2.3E-08 7.9E-13 93.9 -13.2 210 123-338 169-408 (461)
73 2z66_A Variable lymphocyte rec 97.9 6.1E-07 2.1E-11 79.5 -3.4 178 120-313 74-258 (306)
74 3j0a_A TOLL-like receptor 5; m 97.8 6.9E-06 2.4E-10 83.2 3.1 61 272-339 476-537 (844)
75 1ogq_A PGIP-2, polygalacturona 97.8 3E-06 1E-10 75.5 0.3 202 117-339 69-279 (313)
76 2ft3_A Biglycan; proteoglycan, 97.8 2.3E-06 7.8E-11 76.8 -0.5 205 117-337 95-329 (332)
77 3v7d_B Cell division control p 97.8 5.7E-06 2E-10 77.2 2.2 41 3-43 11-51 (464)
78 4eco_A Uncharacterized protein 97.8 4.7E-06 1.6E-10 81.7 0.9 201 116-337 239-466 (636)
79 4ecn_A Leucine-rich repeat pro 97.8 2.6E-06 8.8E-11 86.1 -0.9 63 117-184 564-631 (876)
80 3rfs_A Internalin B, repeat mo 97.8 5.6E-06 1.9E-10 72.1 1.3 155 119-288 58-217 (272)
81 3goz_A Leucine-rich repeat-con 97.7 2.1E-06 7.3E-11 78.0 -2.1 182 124-313 80-294 (362)
82 2z62_A TOLL-like receptor 4, v 97.7 6.1E-06 2.1E-10 71.9 0.8 82 119-206 47-133 (276)
83 2ft3_A Biglycan; proteoglycan, 97.7 1E-06 3.5E-11 79.0 -4.4 56 124-183 54-113 (332)
84 2xwt_C Thyrotropin receptor; s 97.7 1.2E-05 4.2E-10 68.4 2.4 188 125-337 32-235 (239)
85 3a79_B TLR6, VLRB.59, TOLL-lik 97.7 2.9E-05 9.9E-10 74.8 5.2 39 301-340 247-288 (562)
86 4eco_A Uncharacterized protein 97.7 2.9E-06 1E-10 83.1 -1.9 62 117-183 266-341 (636)
87 1ziw_A TOLL-like receptor 3; i 97.7 2.6E-06 9E-11 83.9 -2.6 38 300-338 477-514 (680)
88 1ziw_A TOLL-like receptor 3; i 97.6 4.7E-06 1.6E-10 82.1 -1.1 56 124-182 381-440 (680)
89 3g06_A SSPH2 (leucine-rich rep 97.6 3.6E-05 1.2E-09 75.0 4.7 56 274-339 239-295 (622)
90 2o6q_A Variable lymphocyte rec 97.6 2.7E-05 9.1E-10 67.6 3.4 155 119-288 56-217 (270)
91 1wwl_A Monocyte differentiatio 97.6 4.5E-06 1.5E-10 74.3 -1.9 196 122-337 93-305 (312)
92 1h6t_A Internalin B; cell adhe 97.6 5.2E-05 1.8E-09 66.7 4.8 146 120-288 64-212 (291)
93 2ovr_B FBW7, F-BOX/WD repeat p 97.5 4.3E-05 1.5E-09 70.9 4.0 38 3-40 15-52 (445)
94 1z7x_W Ribonuclease inhibitor; 97.5 1.2E-06 4.2E-11 82.0 -6.7 67 274-340 140-211 (461)
95 4glp_A Monocyte differentiatio 97.5 1.3E-05 4.5E-10 71.1 -0.2 198 123-337 90-303 (310)
96 1p22_A F-BOX/WD-repeat protein 97.5 2.2E-05 7.7E-10 72.7 1.1 38 3-40 7-48 (435)
97 1m9s_A Internalin B; cell inva 97.5 3.7E-05 1.3E-09 74.7 2.5 15 272-286 193-207 (605)
98 3m19_A Variable lymphocyte rec 97.5 1.5E-05 5.2E-10 68.4 -0.2 170 125-313 15-189 (251)
99 3e4g_A ATP synthase subunit S, 97.4 1E-05 3.6E-10 65.2 -2.0 82 147-236 61-150 (176)
100 1p9a_G Platelet glycoprotein I 97.4 4.2E-05 1.4E-09 67.2 1.7 193 121-337 7-204 (290)
101 2je0_A Acidic leucine-rich nuc 97.4 3.9E-05 1.3E-09 60.0 1.3 36 301-336 111-148 (149)
102 1xeu_A Internalin C; cellular 97.4 1E-05 3.5E-10 70.1 -2.6 159 126-313 21-182 (263)
103 4ezg_A Putative uncharacterize 97.3 2.7E-05 9.2E-10 64.2 -0.2 62 119-184 61-124 (197)
104 2ell_A Acidic leucine-rich nuc 97.3 0.00017 5.9E-09 57.5 4.2 69 269-339 88-158 (168)
105 3cvr_A Invasion plasmid antige 97.3 6.8E-05 2.3E-09 72.2 1.9 68 124-206 80-149 (571)
106 3m19_A Variable lymphocyte rec 97.3 0.0001 3.5E-09 63.1 2.4 151 124-289 35-192 (251)
107 1a9n_A U2A', U2A'; complex (nu 97.2 0.00011 3.7E-09 59.3 2.0 63 273-337 85-149 (176)
108 2xwt_C Thyrotropin receptor; s 97.2 0.00048 1.6E-08 58.3 5.7 168 119-312 50-235 (239)
109 2ell_A Acidic leucine-rich nuc 97.1 4.3E-05 1.5E-09 61.1 -1.4 75 124-206 24-104 (168)
110 1jl5_A Outer protein YOPM; leu 97.1 0.0001 3.5E-09 69.1 1.0 75 119-206 190-266 (454)
111 4glp_A Monocyte differentiatio 97.1 0.00014 4.7E-09 64.4 1.6 105 147-254 64-177 (310)
112 3un9_A NLR family member X1; l 97.0 3.4E-06 1.2E-10 77.0 -10.0 57 124-183 72-137 (372)
113 2z62_A TOLL-like receptor 4, v 97.0 1.9E-05 6.4E-10 68.7 -5.1 193 124-337 28-233 (276)
114 1jl5_A Outer protein YOPM; leu 97.0 0.00015 5.2E-09 67.9 0.7 139 120-288 149-289 (454)
115 2v9t_B SLIT homolog 2 protein 96.9 0.00052 1.8E-08 57.5 3.3 53 271-326 123-179 (220)
116 1wwl_A Monocyte differentiatio 96.8 0.00098 3.3E-08 58.9 4.3 204 124-339 43-264 (312)
117 1a9n_A U2A', U2A'; complex (nu 96.8 0.00011 3.8E-09 59.3 -1.8 57 121-183 16-75 (176)
118 1dce_A Protein (RAB geranylger 96.7 3.1E-06 1E-10 81.7 -13.5 195 121-334 346-566 (567)
119 4g8a_A TOLL-like receptor 4; l 96.7 0.0019 6.4E-08 62.5 5.8 61 119-183 71-135 (635)
120 2je0_A Acidic leucine-rich nuc 96.6 8.7E-05 3E-09 58.0 -3.2 117 124-251 17-145 (149)
121 1ds9_A Outer arm dynein; leuci 96.5 0.00021 7.2E-09 58.8 -1.6 35 145-184 46-82 (198)
122 2o6s_A Variable lymphocyte rec 96.4 0.00082 2.8E-08 55.5 1.3 14 169-182 73-86 (208)
123 2o6s_A Variable lymphocyte rec 96.4 0.00067 2.3E-08 56.1 0.7 130 146-313 27-158 (208)
124 3cvr_A Invasion plasmid antige 96.4 0.0019 6.7E-08 62.1 4.0 68 125-206 60-129 (571)
125 2xot_A Amphoterin-induced prot 96.2 0.0006 2.1E-08 61.7 -0.5 38 273-313 160-199 (361)
126 4g8a_A TOLL-like receptor 4; l 96.2 0.00075 2.5E-08 65.4 -0.3 105 224-337 75-182 (635)
127 2v70_A SLIT-2, SLIT homolog 2 96.1 0.00082 2.8E-08 56.3 -0.2 51 272-325 125-179 (220)
128 4ay9_X Follicle-stimulating ho 96.0 0.0016 5.5E-08 58.6 1.2 38 269-312 195-232 (350)
129 2v9t_B SLIT homolog 2 protein 95.8 0.0045 1.5E-07 51.7 2.9 103 224-337 55-161 (220)
130 3sb4_A Hypothetical leucine ri 95.7 0.026 8.8E-07 50.0 7.6 99 224-335 225-328 (329)
131 2xot_A Amphoterin-induced prot 95.6 0.0048 1.6E-07 55.7 2.5 151 171-337 38-198 (361)
132 2ra8_A Uncharacterized protein 95.5 0.042 1.4E-06 49.6 8.4 62 274-337 217-288 (362)
133 2v70_A SLIT-2, SLIT homolog 2 95.4 0.0039 1.3E-07 52.0 1.3 103 224-337 56-162 (220)
134 1io0_A Tropomodulin; LRR prote 95.0 0.00049 1.7E-08 56.1 -5.6 70 269-338 86-161 (185)
135 3e6j_A Variable lymphocyte rec 95.0 0.0076 2.6E-07 50.6 1.7 125 197-337 40-168 (229)
136 3e6j_A Variable lymphocyte rec 94.9 0.0045 1.5E-07 52.0 0.0 120 124-253 40-166 (229)
137 4ay9_X Follicle-stimulating ho 94.8 0.0044 1.5E-07 55.7 -0.3 80 124-207 30-114 (350)
138 3un9_A NLR family member X1; l 94.8 0.00046 1.6E-08 62.8 -7.0 72 269-340 176-251 (372)
139 2o6r_A Variable lymphocyte rec 94.6 0.011 3.9E-07 47.1 1.8 104 197-313 28-134 (177)
140 3sb4_A Hypothetical leucine ri 94.6 0.024 8.1E-07 50.3 3.9 96 196-309 225-327 (329)
141 1w8a_A SLIT protein; signaling 94.1 0.011 3.7E-07 48.1 0.6 53 127-183 11-65 (192)
142 4fdw_A Leucine rich hypothetic 94.0 0.042 1.4E-06 50.3 4.4 55 224-285 270-332 (401)
143 2wfh_A SLIT homolog 2 protein 94.0 0.019 6.6E-07 46.7 1.9 116 197-326 31-153 (193)
144 1io0_A Tropomodulin; LRR prote 93.5 0.045 1.6E-06 44.1 3.2 24 65-88 21-45 (185)
145 4fdw_A Leucine rich hypothetic 93.0 0.031 1.1E-06 51.2 1.7 102 226-337 249-354 (401)
146 1dce_A Protein (RAB geranylger 92.7 0.014 4.7E-07 56.2 -1.2 117 124-251 441-565 (567)
147 4b8c_D Glucose-repressible alc 92.5 0.012 4E-07 58.4 -2.1 108 117-236 217-327 (727)
148 1w8a_A SLIT protein; signaling 92.4 0.029 9.8E-07 45.5 0.5 105 197-313 29-136 (192)
149 2wfh_A SLIT homolog 2 protein 90.5 0.23 7.8E-06 40.1 4.0 14 273-286 123-136 (193)
150 2o6r_A Variable lymphocyte rec 90.3 0.056 1.9E-06 43.0 0.1 104 124-236 28-135 (177)
151 3g39_A Variable lymphocyte rec 89.3 0.25 8.5E-06 39.0 3.3 96 225-329 30-133 (170)
152 1ds9_A Outer arm dynein; leuci 88.3 0.049 1.7E-06 44.3 -1.6 82 117-207 64-150 (198)
153 4fs7_A Uncharacterized protein 88.2 0.72 2.5E-05 41.7 6.1 59 119-181 157-217 (394)
154 4b8c_D Glucose-repressible alc 87.2 0.041 1.4E-06 54.5 -3.2 84 117-207 240-326 (727)
155 2r9u_A Variable lymphocyte rec 87.1 0.51 1.7E-05 37.3 3.8 80 225-313 33-115 (174)
156 3rw6_A Nuclear RNA export fact 86.8 0.4 1.4E-05 41.1 3.2 62 270-334 190-257 (267)
157 2ifg_A High affinity nerve gro 85.7 0.15 5.2E-06 45.2 -0.0 84 117-207 25-113 (347)
158 2r9u_A Variable lymphocyte rec 83.9 0.35 1.2E-05 38.3 1.4 84 117-207 28-115 (174)
159 4gt6_A Cell surface protein; l 83.5 5.1 0.00017 35.9 9.2 12 120-131 133-144 (394)
160 3g39_A Variable lymphocyte rec 83.4 0.37 1.3E-05 37.9 1.3 84 117-207 25-112 (170)
161 3rw6_A Nuclear RNA export fact 82.3 0.64 2.2E-05 39.8 2.4 55 121-178 193-257 (267)
162 2ifg_A High affinity nerve gro 75.0 2.7 9.3E-05 36.9 4.4 91 225-325 31-129 (347)
163 1pgv_A TMD-1, tropomodulin TMD 53.6 3.1 0.00011 33.7 0.3 57 123-182 69-136 (197)
164 4gt6_A Cell surface protein; l 46.3 11 0.00038 33.6 2.9 80 119-206 283-366 (394)
165 4fs7_A Uncharacterized protein 44.8 8.5 0.00029 34.4 1.8 81 119-206 292-375 (394)
166 2kwv_A RAD30 homolog B, DNA po 33.4 24 0.00081 20.8 1.8 16 6-21 20-35 (48)
167 3rfe_A Platelet glycoprotein I 31.1 27 0.00092 25.7 2.4 48 277-327 32-83 (130)
168 4h09_A Hypothetical leucine ri 28.2 14 0.00048 32.6 0.4 57 120-180 259-318 (379)
No 1
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.77 E-value=2.4e-20 Score=181.82 Aligned_cols=162 Identities=15% Similarity=0.173 Sum_probs=84.3
Q ss_pred CCCccCCCChHHHHHHHcCCC-hhhhhhhhccccchHHhhc-cCceeEeecCCCCCCCCCCCCCcchHHHHHHHHhcCCC
Q 047191 3 PAYRINALPDSVLCHILSYLP-TKNVVATSILARRWKLVWT-SLQKLYFDDRQSRRLPGMMGDPMPGFEDFIERVLTGTQ 80 (341)
Q Consensus 3 ~~d~is~LPd~iL~~Ils~Lp-~~~~~~~s~vskrWr~lw~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~ 80 (341)
..|++++|||||+.+||+||| .+|+++++.|||||+++.. ....+.+..... ..-. ..+.+-+
T Consensus 2 ~~d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~~~~-----------~~~~----~~~~~~~ 66 (594)
T 2p1m_B 2 QKRIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIERWCRRKVFIGNCYA-----------VSPA----TVIRRFP 66 (594)
T ss_dssp --------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHHHHHHCCEEEESSTTS-----------SCHH----HHHHHCT
T ss_pred cccchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHhhhhhceEEeeccccc-----------cCHH----HHHhhCC
Confidence 358999999999999999999 9999999999999998832 222344332111 0011 1222335
Q ss_pred CE-EEEEEEeecC---------CCchhHHHHHHHHhcc---cccccccc-------ccccc-ccCcceEEEEeeee-eec
Q 047191 81 PM-NITIFFMHCS---------KLLGVMLGRLNYILTR---ITALSCLC-------QIELY-ASPSVEVLKLMSDF-LLK 138 (341)
Q Consensus 81 ~i-~l~l~~~~~~---------~~~~~~~~wl~~~~~~---l~~L~~~~-------p~~~~-~~~~L~~L~L~~~~-~l~ 138 (341)
.+ ++.+.. ... .+...+..|+..+... +++|+..+ +..+. .|++|++|+| .+| .+.
T Consensus 67 ~L~~L~L~~-~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L-~~~~~~~ 144 (594)
T 2p1m_B 67 KVRSVELKG-KPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVL-SSCEGFS 144 (594)
T ss_dssp TCCEEEEEC-SCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEE-ESCEEEE
T ss_pred CceEEeccC-CCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeC-CCcCCCC
Confidence 57 887776 321 1234566788776543 44443211 11222 3566666666 443 332
Q ss_pred c--CCC-cccCCchhhhhhhccC--CCc---chHHHHHhcCCccceeEEeeee
Q 047191 139 V--PAG-GTCFPNVKILTMQLES--PDN---ILTEKLFCSCPSLEELSIQAYL 183 (341)
Q Consensus 139 ~--~~~-~~~~~~L~~L~~~L~~--~~~---~~l~~ll~~cp~Le~L~L~~c~ 183 (341)
. .+. ..++++|++| +|.+ +++ ..+..+...||+|+.|++.+|.
T Consensus 145 ~~~l~~~~~~~~~L~~L--~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~ 195 (594)
T 2p1m_B 145 TDGLAAIAATCRNLKEL--DLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA 195 (594)
T ss_dssp HHHHHHHHHHCTTCCEE--ECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC
T ss_pred HHHHHHHHHhCCCCCEE--eCcCCccCCcchHHHHHHhhcCCcCcEEEecccC
Confidence 1 101 1245666666 6655 222 2344444456666666666554
No 2
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.77 E-value=2.8e-19 Score=174.21 Aligned_cols=41 Identities=24% Similarity=0.438 Sum_probs=33.2
Q ss_pred CCccC----CCChHHHHHHHcCC-ChhhhhhhhccccchHHhhccC
Q 047191 4 AYRIN----ALPDSVLCHILSYL-PTKNVVATSILARRWKLVWTSL 44 (341)
Q Consensus 4 ~d~is----~LPd~iL~~Ils~L-p~~~~~~~s~vskrWr~lw~~~ 44 (341)
.|+++ +||||++.+||+|| +.+|+++++.|||||++++...
T Consensus 6 ~~r~~~~~~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~~~~~ 51 (592)
T 3ogk_B 6 IKRCKLSCVATVDDVIEQVMTYITDPKDRDSASLVCRRWFKIDSET 51 (592)
T ss_dssp ------CCCCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHHHHHH
T ss_pred hhhHhhccCCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHhhhcc
Confidence 56666 89999999999999 8999999999999999986443
No 3
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.73 E-value=3e-19 Score=161.85 Aligned_cols=271 Identities=17% Similarity=0.152 Sum_probs=149.8
Q ss_pred CCccCCCChHHHHHHHcCCChhhhhhhhccccchHHhhcc---CceeEeecCCCCCCCCCCCCCcchHHHHHHHHhcCCC
Q 047191 4 AYRINALPDSVLCHILSYLPTKNVVATSILARRWKLVWTS---LQKLYFDDRQSRRLPGMMGDPMPGFEDFIERVLTGTQ 80 (341)
Q Consensus 4 ~d~is~LPd~iL~~Ils~Lp~~~~~~~s~vskrWr~lw~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~ 80 (341)
...+++||||++.+||++|+.+|+++++.|||+|+++... ...+++..... .
T Consensus 6 ~~~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~~~~~~~l~l~~~~~----------~--------------- 60 (336)
T 2ast_B 6 GVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTLDLTGKNL----------H--------------- 60 (336)
T ss_dssp -CCSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTCSTTSSEEECTTCBC----------C---------------
T ss_pred cCChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCchhheeeccccccC----------C---------------
Confidence 3458999999999999999999999999999999998632 22334332221 0
Q ss_pred CEEEEEEEeecCCCchhHHHHHHHHhcc-cccccccc------cccccccCcceEEEEeeeeeecc---CCCcccCCchh
Q 047191 81 PMNITIFFMHCSKLLGVMLGRLNYILTR-ITALSCLC------QIELYASPSVEVLKLMSDFLLKV---PAGGTCFPNVK 150 (341)
Q Consensus 81 ~i~l~l~~~~~~~~~~~~~~wl~~~~~~-l~~L~~~~------p~~~~~~~~L~~L~L~~~~~l~~---~~~~~~~~~L~ 150 (341)
...+...... ++.++... +..++.+++|++|+| +++.+.. +.....+++|+
T Consensus 61 ------------------~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L-~~~~l~~~~~~~~~~~~~~L~ 121 (336)
T 2ast_B 61 ------------------PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDL-SNSVIEVSTLHGILSQCSKLQ 121 (336)
T ss_dssp ------------------HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEEC-TTCEECHHHHHHHHTTBCCCS
T ss_pred ------------------HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEc-cCCCcCHHHHHHHHhhCCCCC
Confidence 0112222112 33332111 333556777788888 6555532 11234567788
Q ss_pred hhhhhccC--CCcchHHHHHhcCCccceeEEeeeecCCCC-ceeEEEeCCCcceEEEeeecCccccccCceeEEEecC-C
Q 047191 151 ILTMQLES--PDNILTEKLFCSCPSLEELSIQAYLNDEGP-TTKFVISSSTLKQCTLWVETEGEMFTQAEYKVRITAP-S 226 (341)
Q Consensus 151 ~L~~~L~~--~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~-~~~l~i~~~sL~~L~i~~c~~~~~~~~~~~~~~~~~p-~ 226 (341)
+| +|.+ +++..... ++.||+|+.|++.+|...... .+.+.-..++|+.|.+.+|..... ..........| +
T Consensus 122 ~L--~L~~~~l~~~~~~~-l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~--~~~~~~~~~l~~~ 196 (336)
T 2ast_B 122 NL--SLEGLRLSDPIVNT-LAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTE--KHVQVAVAHVSET 196 (336)
T ss_dssp EE--ECTTCBCCHHHHHH-HTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCH--HHHHHHHHHSCTT
T ss_pred EE--eCcCcccCHHHHHH-HhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcCh--HHHHHHHHhcccC
Confidence 88 7777 55444443 566788888888777432100 001122456777777777422111 11122223466 7
Q ss_pred ceEEEeeccc--cC--c--eeecCCCCeeEEEEEEEeCccccCCCccchHHhhcCCCceEEEEecchhhhccccccCCCC
Q 047191 227 LERLHIMSDI--FG--K--FVVHDLNSLTDVILDIVYGEWSRVDPNRSIQLLQQLNNTTSLTVSYGVLCALDHAYHKWFP 300 (341)
Q Consensus 227 L~~l~~~~~~--~~--~--~~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~L~l~~~~~~~~~~~~~~~~~ 300 (341)
|++|.+.++. .. . ..+..+++|+.+++..... +... ....+..+++++.|.++.+. .+. ......+.
T Consensus 197 L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~----l~~~-~~~~l~~l~~L~~L~l~~~~-~~~-~~~~~~l~ 269 (336)
T 2ast_B 197 ITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVM----LKND-CFQEFFQLNYLQHLSLSRCY-DII-PETLLELG 269 (336)
T ss_dssp CCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTT----CCGG-GGGGGGGCTTCCEEECTTCT-TCC-GGGGGGGG
T ss_pred CCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCc----CCHH-HHHHHhCCCCCCEeeCCCCC-CCC-HHHHHHHh
Confidence 8888877752 11 1 1244567777766543221 0000 03345667888888887653 111 11111233
Q ss_pred CCCcccEEEEEEcCCChhHHHHHHhcCCCCC
Q 047191 301 ALSYLQHLEVAVGAIGWAVLPVILSSSVHLQ 331 (341)
Q Consensus 301 ~f~~L~~L~l~~~~~~~~~l~~ll~~cp~L~ 331 (341)
.+++|++|++..+ .....+..+.+++|.|+
T Consensus 270 ~~~~L~~L~l~~~-i~~~~~~~l~~~l~~L~ 299 (336)
T 2ast_B 270 EIPTLKTLQVFGI-VPDGTLQLLKEALPHLQ 299 (336)
T ss_dssp GCTTCCEEECTTS-SCTTCHHHHHHHSTTSE
T ss_pred cCCCCCEEeccCc-cCHHHHHHHHhhCcceE
Confidence 5778888888766 44445555556666655
No 4
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.88 E-value=3.8e-10 Score=109.62 Aligned_cols=185 Identities=12% Similarity=0.047 Sum_probs=89.8
Q ss_pred cCCchhhhhhhccC-CCcchHHHHHhcCCccceeEEee----------eecCCCC-ceeEEEeCCCcceEEEeeecCccc
Q 047191 145 CFPNVKILTMQLES-PDNILTEKLFCSCPSLEELSIQA----------YLNDEGP-TTKFVISSSTLKQCTLWVETEGEM 212 (341)
Q Consensus 145 ~~~~L~~L~~~L~~-~~~~~l~~ll~~cp~Le~L~L~~----------c~~~~~~-~~~l~i~~~sL~~L~i~~c~~~~~ 212 (341)
++++|++| .|.. +++..+..+..+||+|++|.+.+ |...... ...+.-.+++|+.|.+.. .....
T Consensus 316 ~~~~L~~L--~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~-~~l~~ 392 (592)
T 3ogk_B 316 KCPNLEVL--ETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYV-SDITN 392 (592)
T ss_dssp TCTTCCEE--EEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEE-SCCCH
T ss_pred hCcCCCEE--eccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeec-CCccH
Confidence 34555555 5554 55555555555555555555553 3221100 000111245566666632 11111
Q ss_pred cccCceeEEEecCCceEEEeeccc----cCc--------eeecCCCCeeEEEEEEEeCccccCCCccc-hHHhhcCCCce
Q 047191 213 FTQAEYKVRITAPSLERLHIMSDI----FGK--------FVVHDLNSLTDVILDIVYGEWSRVDPNRS-IQLLQQLNNTT 279 (341)
Q Consensus 213 ~~~~~~~~~~~~p~L~~l~~~~~~----~~~--------~~~~~~~~L~~~~l~~~~~~~~~~~~~~~-~~~l~~~~~l~ 279 (341)
.....+.-.+|+|++|++.+.. ... ..+.++++|+.+.+..+.+. +... . ..+...+++++
T Consensus 393 --~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~---l~~~-~~~~~~~~~~~L~ 466 (592)
T 3ogk_B 393 --ESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGG---LTDL-GLSYIGQYSPNVR 466 (592)
T ss_dssp --HHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGG---CCHH-HHHHHHHSCTTCC
T ss_pred --HHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCC---ccHH-HHHHHHHhCccce
Confidence 1112222235666666665321 000 01334566666665432210 0000 1 33444567777
Q ss_pred EEEEecchhhhccccccCCCCCCCcccEEEEEEcCCChhHHHHHHhcCCCCCcEEEeeeee
Q 047191 280 SLTVSYGVLCALDHAYHKWFPALSYLQHLEVAVGAIGWAVLPVILSSSVHLQSLVLRKVII 340 (341)
Q Consensus 280 ~L~l~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~~~~~l~~ll~~cp~L~~L~l~~~~~ 340 (341)
.|.++.+.+....... .+..+++|++|+|..+..+...+..+...+|+|+.|++.+-.|
T Consensus 467 ~L~L~~n~l~~~~~~~--~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~i 525 (592)
T 3ogk_B 467 WMLLGYVGESDEGLME--FSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRA 525 (592)
T ss_dssp EEEECSCCSSHHHHHH--HHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBC
T ss_pred EeeccCCCCCHHHHHH--HHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcC
Confidence 7777655432110010 0124567888888887556667777788888888888877554
No 5
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=98.85 E-value=1.4e-09 Score=70.00 Aligned_cols=39 Identities=26% Similarity=0.410 Sum_probs=33.9
Q ss_pred CCccCCCChHHHHHHHcCCChhhhhhhhccccchHHhhc
Q 047191 4 AYRINALPDSVLCHILSYLPTKNVVATSILARRWKLVWT 42 (341)
Q Consensus 4 ~d~is~LPd~iL~~Ils~Lp~~~~~~~s~vskrWr~lw~ 42 (341)
.+.++.||+|++.+||++||.+|+++++.|||+|+.+..
T Consensus 6 ~~~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~~ 44 (53)
T 1fs1_A 6 GVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLAS 44 (53)
T ss_dssp ---CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHT
T ss_pred CCCHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Confidence 456899999999999999999999999999999997643
No 6
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=98.81 E-value=9.4e-11 Score=105.69 Aligned_cols=225 Identities=16% Similarity=0.106 Sum_probs=145.8
Q ss_pred HHHHHHhcc--cccccccc----ccccccc--CcceEEEEeeeeeec-cCCCcccCCchhhhhhhccC--CCcchHHHHH
Q 047191 100 GRLNYILTR--ITALSCLC----QIELYAS--PSVEVLKLMSDFLLK-VPAGGTCFPNVKILTMQLES--PDNILTEKLF 168 (341)
Q Consensus 100 ~wl~~~~~~--l~~L~~~~----p~~~~~~--~~L~~L~L~~~~~l~-~~~~~~~~~~L~~L~~~L~~--~~~~~l~~ll 168 (341)
+|-..+... ++.++... |..+... +.++.|++ .+..+. .++....+++|+.| +|.+ +++..+..++
T Consensus 38 ~W~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~l~~L~l-~~n~l~~~~~~~~~~~~L~~L--~L~~~~l~~~~~~~~~ 114 (336)
T 2ast_B 38 RWYRLASDESLWQTLDLTGKNLHPDVTGRLLSQGVIAFRC-PRSFMDQPLAEHFSPFRVQHM--DLSNSVIEVSTLHGIL 114 (336)
T ss_dssp HHHHHHTCSTTSSEEECTTCBCCHHHHHHHHHTTCSEEEC-TTCEECSCCCSCCCCBCCCEE--ECTTCEECHHHHHHHH
T ss_pred HHHHHhcCchhheeeccccccCCHHHHHhhhhccceEEEc-CCccccccchhhccCCCCCEE--EccCCCcCHHHHHHHH
Confidence 455554433 55553221 3333333 78999999 665553 33345678999999 9999 7777799999
Q ss_pred hcCCccceeEEeeeecCCCCceeEEEeCCCcceEEEeeecCccccccCceeEEEecCCceEEEeecc-ccCc----eeec
Q 047191 169 CSCPSLEELSIQAYLNDEGPTTKFVISSSTLKQCTLWVETEGEMFTQAEYKVRITAPSLERLHIMSD-IFGK----FVVH 243 (341)
Q Consensus 169 ~~cp~Le~L~L~~c~~~~~~~~~l~i~~~sL~~L~i~~c~~~~~~~~~~~~~~~~~p~L~~l~~~~~-~~~~----~~~~ 243 (341)
.+||+|+.|++.+|.-.+.....+ -..++|+.|++.+|..... .....+...+|+|++|.+.++ .... ..+.
T Consensus 115 ~~~~~L~~L~L~~~~l~~~~~~~l-~~~~~L~~L~L~~~~~l~~--~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~ 191 (336)
T 2ast_B 115 SQCSKLQNLSLEGLRLSDPIVNTL-AKNSNLVRLNLSGCSGFSE--FALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVA 191 (336)
T ss_dssp TTBCCCSEEECTTCBCCHHHHHHH-TTCTTCSEEECTTCBSCCH--HHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHH
T ss_pred hhCCCCCEEeCcCcccCHHHHHHH-hcCCCCCEEECCCCCCCCH--HHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHH
Confidence 999999999999985321000011 1368999999999632221 112222335799999999987 4432 1256
Q ss_pred CCC-CeeEEEEEEEeCccccCCCccc-hHHhhcCCCceEEEEecch-hhhccccccCCCCCCCcccEEEEEEc-CCChhH
Q 047191 244 DLN-SLTDVILDIVYGEWSRVDPNRS-IQLLQQLNNTTSLTVSYGV-LCALDHAYHKWFPALSYLQHLEVAVG-AIGWAV 319 (341)
Q Consensus 244 ~~~-~L~~~~l~~~~~~~~~~~~~~~-~~~l~~~~~l~~L~l~~~~-~~~~~~~~~~~~~~f~~L~~L~l~~~-~~~~~~ 319 (341)
.++ +|+.+++..... .+... . ...+..+++++.|.++.+. +... ....+..+++|++|++..+ ......
T Consensus 192 ~l~~~L~~L~l~~~~~---~~~~~-~l~~~~~~~~~L~~L~l~~~~~l~~~---~~~~l~~l~~L~~L~l~~~~~~~~~~ 264 (336)
T 2ast_B 192 HVSETITQLNLSGYRK---NLQKS-DLSTLVRRCPNLVHLDLSDSVMLKND---CFQEFFQLNYLQHLSLSRCYDIIPET 264 (336)
T ss_dssp HSCTTCCEEECCSCGG---GSCHH-HHHHHHHHCTTCSEEECTTCTTCCGG---GGGGGGGCTTCCEEECTTCTTCCGGG
T ss_pred hcccCCCEEEeCCCcc---cCCHH-HHHHHHhhCCCCCEEeCCCCCcCCHH---HHHHHhCCCCCCEeeCCCCCCCCHHH
Confidence 788 999988754310 01000 1 5567889999999998875 2211 1112336689999999988 444554
Q ss_pred HHHHHhcCCCCCcEEEeee
Q 047191 320 LPVILSSSVHLQSLVLRKV 338 (341)
Q Consensus 320 l~~ll~~cp~L~~L~l~~~ 338 (341)
+ ..+..+|+|+.|++.+.
T Consensus 265 ~-~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 265 L-LELGEIPTLKTLQVFGI 282 (336)
T ss_dssp G-GGGGGCTTCCEEECTTS
T ss_pred H-HHHhcCCCCCEEeccCc
Confidence 4 34577999999998764
No 7
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=98.66 E-value=8.1e-09 Score=92.97 Aligned_cols=200 Identities=13% Similarity=0.053 Sum_probs=124.6
Q ss_pred cccccccCcceEEEEeeeeeeccCC-CcccCCchhhhhhhccC--CCcchHHHHHhcCCccceeEEeeeecCCCCceeEE
Q 047191 117 QIELYASPSVEVLKLMSDFLLKVPA-GGTCFPNVKILTMQLES--PDNILTEKLFCSCPSLEELSIQAYLNDEGPTTKFV 193 (341)
Q Consensus 117 p~~~~~~~~L~~L~L~~~~~l~~~~-~~~~~~~L~~L~~~L~~--~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~l~ 193 (341)
|..++.++.|++|+| ++..+...| ....+++|++| +|.+ ++ .+..-+.++++|+.|++.+|...+.-+..+.
T Consensus 97 p~~l~~l~~L~~L~L-~~n~l~~lp~~~~~l~~L~~L--~Ls~n~l~--~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~ 171 (328)
T 4fcg_A 97 PDQAFRLSHLQHMTI-DAAGLMELPDTMQQFAGLETL--TLARNPLR--ALPASIASLNRLRELSIRACPELTELPEPLA 171 (328)
T ss_dssp CSCGGGGTTCSEEEE-ESSCCCCCCSCGGGGTTCSEE--EEESCCCC--CCCGGGGGCTTCCEEEEEEETTCCCCCSCSE
T ss_pred ChhhhhCCCCCEEEC-CCCCccchhHHHhccCCCCEE--ECCCCccc--cCcHHHhcCcCCCEEECCCCCCccccChhHh
Confidence 777888999999999 766554433 45678999999 9988 44 3344478899999999999855321111111
Q ss_pred --------EeCCCcceEEEeeecCccccccCceeEEEecCCceEEEeeccccCce--eecCCCCeeEEEEEEEeCccccC
Q 047191 194 --------ISSSTLKQCTLWVETEGEMFTQAEYKVRITAPSLERLHIMSDIFGKF--VVHDLNSLTDVILDIVYGEWSRV 263 (341)
Q Consensus 194 --------i~~~sL~~L~i~~c~~~~~~~~~~~~~~~~~p~L~~l~~~~~~~~~~--~~~~~~~L~~~~l~~~~~~~~~~ 263 (341)
-..++|+.|.+..|.-... .......++|++|.+++.....+ .+..+++|+.+++.-.......
T Consensus 172 ~~~~~~~~~~l~~L~~L~L~~n~l~~l-----p~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~- 245 (328)
T 4fcg_A 172 STDASGEHQGLVNLQSLRLEWTGIRSL-----PASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNY- 245 (328)
T ss_dssp EEC-CCCEEESTTCCEEEEEEECCCCC-----CGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBC-
T ss_pred hccchhhhccCCCCCEEECcCCCcCcc-----hHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhh-
Confidence 1378899999998521111 01112467899999987655432 3667788888776432111100
Q ss_pred CCccchHHhhcCCCceEEEEecchhhhccccccCCCCCCCcccEEEEEEcCCChhHHHHHHhcCCCCCcEEEe
Q 047191 264 DPNRSIQLLQQLNNTTSLTVSYGVLCALDHAYHKWFPALSYLQHLEVAVGAIGWAVLPVILSSSVHLQSLVLR 336 (341)
Q Consensus 264 ~~~~~~~~l~~~~~l~~L~l~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~~~~~l~~ll~~cp~L~~L~l~ 336 (341)
...+..+++++.|.++.+..... ....+..+++|++|+|..+. ....+..-+..+|+|+.+.+.
T Consensus 246 -----p~~~~~l~~L~~L~L~~n~~~~~---~p~~~~~l~~L~~L~L~~n~-~~~~iP~~l~~L~~L~~l~l~ 309 (328)
T 4fcg_A 246 -----PPIFGGRAPLKRLILKDCSNLLT---LPLDIHRLTQLEKLDLRGCV-NLSRLPSLIAQLPANCIILVP 309 (328)
T ss_dssp -----CCCTTCCCCCCEEECTTCTTCCB---CCTTGGGCTTCCEEECTTCT-TCCCCCGGGGGSCTTCEEECC
T ss_pred -----HHHhcCCCCCCEEECCCCCchhh---cchhhhcCCCCCEEeCCCCC-chhhccHHHhhccCceEEeCC
Confidence 23456778888888887543111 11123357788888888761 111233446778888887664
No 8
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=98.63 E-value=3.2e-08 Score=89.79 Aligned_cols=204 Identities=13% Similarity=0.060 Sum_probs=117.6
Q ss_pred cccccCcceEEEEeeeeeecc-CC-CcccCCchhhhhhhccC--CCcchHHHHHhcCCccceeEEeeeecCCCCcee--E
Q 047191 119 ELYASPSVEVLKLMSDFLLKV-PA-GGTCFPNVKILTMQLES--PDNILTEKLFCSCPSLEELSIQAYLNDEGPTTK--F 192 (341)
Q Consensus 119 ~~~~~~~L~~L~L~~~~~l~~-~~-~~~~~~~L~~L~~~L~~--~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~--l 192 (341)
.+..+++|++|+| ++..+.. ++ ...++++|++| +|.+ ++. .-...+.++++|+.|++.++.-..+. . .
T Consensus 71 ~~~~l~~L~~L~L-~~n~l~~~~~~~~~~l~~L~~L--~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~l~--~~~~ 144 (353)
T 2z80_A 71 DLQRCVNLQALVL-TSNGINTIEEDSFSSLGSLEHL--DLSYNYLSN-LSSSWFKPLSSLTFLNLLGNPYKTLG--ETSL 144 (353)
T ss_dssp TTTTCTTCCEEEC-TTSCCCEECTTTTTTCTTCCEE--ECCSSCCSS-CCHHHHTTCTTCSEEECTTCCCSSSC--SSCS
T ss_pred HhccCCCCCEEEC-CCCccCccCHhhcCCCCCCCEE--ECCCCcCCc-CCHhHhCCCccCCEEECCCCCCcccC--chhh
Confidence 5666899999999 6555532 22 35568999999 9988 443 22344788999999999887543322 2 1
Q ss_pred EEeCCCcceEEEeeecCccccccCceeEEEecCCceEEEeeccccCce---eecCCCCeeEEEEEEEeCccccCCCccch
Q 047191 193 VISSSTLKQCTLWVETEGEMFTQAEYKVRITAPSLERLHIMSDIFGKF---VVHDLNSLTDVILDIVYGEWSRVDPNRSI 269 (341)
Q Consensus 193 ~i~~~sL~~L~i~~c~~~~~~~~~~~~~~~~~p~L~~l~~~~~~~~~~---~~~~~~~L~~~~l~~~~~~~~~~~~~~~~ 269 (341)
.-..++|+.|.+..|....... ....-..++|++|.+.+...... .+..+++|+++++....... . ..
T Consensus 145 ~~~l~~L~~L~l~~n~~~~~~~---~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~--~----~~ 215 (353)
T 2z80_A 145 FSHLTKLQILRVGNMDTFTKIQ---RKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHIL--L----LE 215 (353)
T ss_dssp CTTCTTCCEEEEEESSSCCEEC---TTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTT--H----HH
T ss_pred hccCCCCcEEECCCCccccccC---HHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCcccc--c----hh
Confidence 1245789999998842111000 00011357889999987654433 35667778877765322111 0 05
Q ss_pred HHhhcCCCceEEEEecchhhhccccccCCCCCCCcccEEEEEEcCCC---hhHHHHHHhcCCCCCcEEEee
Q 047191 270 QLLQQLNNTTSLTVSYGVLCALDHAYHKWFPALSYLQHLEVAVGAIG---WAVLPVILSSSVHLQSLVLRK 337 (341)
Q Consensus 270 ~~l~~~~~l~~L~l~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~~---~~~l~~ll~~cp~L~~L~l~~ 337 (341)
.+...+++++.|.++.+.+..+.............++.+.+...... ...+...+..+|+|+.|++.+
T Consensus 216 ~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~ 286 (353)
T 2z80_A 216 IFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSR 286 (353)
T ss_dssp HHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCS
T ss_pred hhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCC
Confidence 55667899999999987665432211111123344555555554222 223344455566666666554
No 9
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.63 E-value=1.1e-08 Score=92.38 Aligned_cols=100 Identities=17% Similarity=0.185 Sum_probs=57.1
Q ss_pred cCCceEEEeeccccCce-eecCCCCeeEEEEEEEeCccccCCCccchHHhhcCCCceEEEEecchhhhccccccCCCCCC
Q 047191 224 APSLERLHIMSDIFGKF-VVHDLNSLTDVILDIVYGEWSRVDPNRSIQLLQQLNNTTSLTVSYGVLCALDHAYHKWFPAL 302 (341)
Q Consensus 224 ~p~L~~l~~~~~~~~~~-~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~L~l~~~~~~~~~~~~~~~~~~f 302 (341)
.++|+.+.+.+...... .+..+++|+.+++.-.... ....+..+++++.|.++.+.+..+ ..+..+
T Consensus 198 l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~--------~~~~~~~l~~L~~L~l~~n~l~~~-----~~~~~l 264 (347)
T 4fmz_A 198 LTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKIT--------DLSPLANLSQLTWLEIGTNQISDI-----NAVKDL 264 (347)
T ss_dssp CTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCC--------CCGGGTTCTTCCEEECCSSCCCCC-----GGGTTC
T ss_pred CCccceeecccCCCCCCchhhcCCcCCEEEccCCccC--------CCcchhcCCCCCEEECCCCccCCC-----hhHhcC
Confidence 45566666655433221 1455566666555321111 112266777888888877654332 123467
Q ss_pred CcccEEEEEEc-CCChhHHHHHHhcCCCCCcEEEeeeee
Q 047191 303 SYLQHLEVAVG-AIGWAVLPVILSSSVHLQSLVLRKVII 340 (341)
Q Consensus 303 ~~L~~L~l~~~-~~~~~~l~~ll~~cp~L~~L~l~~~~~ 340 (341)
++|++|++..+ -.+. ..+..+|+|+.|++.+-.|
T Consensus 265 ~~L~~L~l~~n~l~~~----~~~~~l~~L~~L~L~~n~l 299 (347)
T 4fmz_A 265 TKLKMLNVGSNQISDI----SVLNNLSQLNSLFLNNNQL 299 (347)
T ss_dssp TTCCEEECCSSCCCCC----GGGGGCTTCSEEECCSSCC
T ss_pred CCcCEEEccCCccCCC----hhhcCCCCCCEEECcCCcC
Confidence 78888888877 2222 2367889999998876443
No 10
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.60 E-value=2.4e-09 Score=103.90 Aligned_cols=58 Identities=21% Similarity=0.405 Sum_probs=35.0
Q ss_pred cCCchhhhhhhccC--CCcchHHHHHhcCCccceeEEeeeecCC-CCceeEEEeCCCcceEEEee
Q 047191 145 CFPNVKILTMQLES--PDNILTEKLFCSCPSLEELSIQAYLNDE-GPTTKFVISSSTLKQCTLWV 206 (341)
Q Consensus 145 ~~~~L~~L~~~L~~--~~~~~l~~ll~~cp~Le~L~L~~c~~~~-~~~~~l~i~~~sL~~L~i~~ 206 (341)
.+++|++| +|.+ +++..+..++.+||+|+.|.+.+|.... .. .+.-.+++|+.|.+..
T Consensus 287 ~~~~L~~L--~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~--~l~~~~~~L~~L~L~~ 347 (594)
T 2p1m_B 287 VCSRLTTL--NLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLE--VLASTCKDLRELRVFP 347 (594)
T ss_dssp HHTTCCEE--ECTTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHH--HHHHHCTTCCEEEEEC
T ss_pred hhCCCCEE--EccCCCCCHHHHHHHHhcCCCcCEEeCcCccCHHHHH--HHHHhCCCCCEEEEec
Confidence 35777777 7766 6666677777777777777777763210 01 1111346677776643
No 11
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.59 E-value=1.4e-08 Score=91.84 Aligned_cols=119 Identities=15% Similarity=0.133 Sum_probs=61.2
Q ss_pred ccccCcceEEEEeeee-eeccCCCcccCCchhhhhhhccC--CCcchHHHHHhcCCccceeEEeeeecCCCCceeEEEeC
Q 047191 120 LYASPSVEVLKLMSDF-LLKVPAGGTCFPNVKILTMQLES--PDNILTEKLFCSCPSLEELSIQAYLNDEGPTTKFVISS 196 (341)
Q Consensus 120 ~~~~~~L~~L~L~~~~-~l~~~~~~~~~~~L~~L~~~L~~--~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~l~i~~ 196 (341)
+..+++|+.|++ +++ ....++....+++|+.| .+.+ +++..- +..++.|+.|++.+|.-.... . .-..
T Consensus 128 ~~~l~~L~~L~l-~~n~~~~~~~~~~~l~~L~~L--~l~~~~~~~~~~---~~~l~~L~~L~l~~n~l~~~~--~-~~~l 198 (347)
T 4fmz_A 128 LANLTKMYSLNL-GANHNLSDLSPLSNMTGLNYL--TVTESKVKDVTP---IANLTDLYSLSLNYNQIEDIS--P-LASL 198 (347)
T ss_dssp GTTCTTCCEEEC-TTCTTCCCCGGGTTCTTCCEE--ECCSSCCCCCGG---GGGCTTCSEEECTTSCCCCCG--G-GGGC
T ss_pred hccCCceeEEEC-CCCCCcccccchhhCCCCcEE--EecCCCcCCchh---hccCCCCCEEEccCCcccccc--c-ccCC
Confidence 455778888888 544 34444345567777777 7776 322211 667777777777776443222 1 1123
Q ss_pred CCcceEEEeeecCccccccCceeEEEecCCceEEEeeccccCce-eecCCCCeeEEEE
Q 047191 197 STLKQCTLWVETEGEMFTQAEYKVRITAPSLERLHIMSDIFGKF-VVHDLNSLTDVIL 253 (341)
Q Consensus 197 ~sL~~L~i~~c~~~~~~~~~~~~~~~~~p~L~~l~~~~~~~~~~-~~~~~~~L~~~~l 253 (341)
++|+.|.+..|.-... .. ....++|++|.+.+...... .+..+++|+.+++
T Consensus 199 ~~L~~L~l~~n~l~~~-----~~-~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l 250 (347)
T 4fmz_A 199 TSLHYFTAYVNQITDI-----TP-VANMTRLNSLKIGNNKITDLSPLANLSQLTWLEI 250 (347)
T ss_dssp TTCCEEECCSSCCCCC-----GG-GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEEC
T ss_pred CccceeecccCCCCCC-----ch-hhcCCcCCEEEccCCccCCCcchhcCCCCCEEEC
Confidence 4556665555311110 00 11345566666655443221 1445555555544
No 12
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=98.54 E-value=4.1e-08 Score=88.33 Aligned_cols=197 Identities=14% Similarity=0.089 Sum_probs=128.7
Q ss_pred cCcceEEEEeeeeeeccCC-CcccCCchhhhhhhccC--CCcchHHHHHhcCCccceeEEeeeecCCCCceeEEEeCCCc
Q 047191 123 SPSVEVLKLMSDFLLKVPA-GGTCFPNVKILTMQLES--PDNILTEKLFCSCPSLEELSIQAYLNDEGPTTKFVISSSTL 199 (341)
Q Consensus 123 ~~~L~~L~L~~~~~l~~~~-~~~~~~~L~~L~~~L~~--~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~l~i~~~sL 199 (341)
...++.|+| .+..+...| ....+++|++| +|.+ ++ .+..-+..+++|+.|++.++.-..+. .---..++|
T Consensus 80 ~~~l~~L~L-~~n~l~~lp~~l~~l~~L~~L--~L~~n~l~--~lp~~~~~l~~L~~L~Ls~n~l~~lp--~~l~~l~~L 152 (328)
T 4fcg_A 80 QPGRVALEL-RSVPLPQFPDQAFRLSHLQHM--TIDAAGLM--ELPDTMQQFAGLETLTLARNPLRALP--ASIASLNRL 152 (328)
T ss_dssp STTCCEEEE-ESSCCSSCCSCGGGGTTCSEE--EEESSCCC--CCCSCGGGGTTCSEEEEESCCCCCCC--GGGGGCTTC
T ss_pred ccceeEEEc-cCCCchhcChhhhhCCCCCEE--ECCCCCcc--chhHHHhccCCCCEEECCCCccccCc--HHHhcCcCC
Confidence 367899999 776665433 45568999999 9988 44 33344678999999999998654333 211245789
Q ss_pred ceEEEeeecCccccccCcee-----EEEecCCceEEEeeccccCce--eecCCCCeeEEEEEEEeCccccCCCccchHHh
Q 047191 200 KQCTLWVETEGEMFTQAEYK-----VRITAPSLERLHIMSDIFGKF--VVHDLNSLTDVILDIVYGEWSRVDPNRSIQLL 272 (341)
Q Consensus 200 ~~L~i~~c~~~~~~~~~~~~-----~~~~~p~L~~l~~~~~~~~~~--~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~l 272 (341)
+.|.+.+|...+........ ..-..++|++|.+.+.....+ .+..+++|+.+++.-..... + ...+
T Consensus 153 ~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~--l-----~~~l 225 (328)
T 4fcg_A 153 RELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSA--L-----GPAI 225 (328)
T ss_dssp CEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCC--C-----CGGG
T ss_pred CEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCc--C-----chhh
Confidence 99999997432221111110 012489999999998764432 36788899998876432211 1 2236
Q ss_pred hcCCCceEEEEecchhhhccccccCCCCCCCcccEEEEEEcCCChhHHHHHHhcCCCCCcEEEee
Q 047191 273 QQLNNTTSLTVSYGVLCALDHAYHKWFPALSYLQHLEVAVGAIGWAVLPVILSSSVHLQSLVLRK 337 (341)
Q Consensus 273 ~~~~~l~~L~l~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~~~~~l~~ll~~cp~L~~L~l~~ 337 (341)
..+++++.|.++.+..... ....+..+++|++|+|..+.. ...+..-+..+|+|+.|+|.+
T Consensus 226 ~~l~~L~~L~Ls~n~~~~~---~p~~~~~l~~L~~L~L~~n~~-~~~~p~~~~~l~~L~~L~L~~ 286 (328)
T 4fcg_A 226 HHLPKLEELDLRGCTALRN---YPPIFGGRAPLKRLILKDCSN-LLTLPLDIHRLTQLEKLDLRG 286 (328)
T ss_dssp GGCTTCCEEECTTCTTCCB---CCCCTTCCCCCCEEECTTCTT-CCBCCTTGGGCTTCCEEECTT
T ss_pred ccCCCCCEEECcCCcchhh---hHHHhcCCCCCCEEECCCCCc-hhhcchhhhcCCCCCEEeCCC
Confidence 7889999999998554221 112344678999999988611 111222368899999999876
No 13
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.54 E-value=2.7e-08 Score=88.68 Aligned_cols=186 Identities=12% Similarity=0.102 Sum_probs=105.2
Q ss_pred cCcceEEEEeeeeeeccCCCcccCCchhhhhhhccC--CCcchHHHHHhcCCccceeEEeeeecCCCCceeEEEeCCCcc
Q 047191 123 SPSVEVLKLMSDFLLKVPAGGTCFPNVKILTMQLES--PDNILTEKLFCSCPSLEELSIQAYLNDEGPTTKFVISSSTLK 200 (341)
Q Consensus 123 ~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~~~L~~--~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~l~i~~~sL~ 200 (341)
.++|++|++ .++.+...+....+++|+.| +|.+ +++-.- +.++++|+.|.+.++.-.... .+ -..++|+
T Consensus 40 l~~L~~L~l-~~~~i~~l~~~~~l~~L~~L--~L~~n~i~~~~~---~~~l~~L~~L~L~~n~l~~~~--~~-~~l~~L~ 110 (308)
T 1h6u_A 40 LDGITTLSA-FGTGVTTIEGVQYLNNLIGL--ELKDNQITDLAP---LKNLTKITELELSGNPLKNVS--AI-AGLQSIK 110 (308)
T ss_dssp HHTCCEEEC-TTSCCCCCTTGGGCTTCCEE--ECCSSCCCCCGG---GTTCCSCCEEECCSCCCSCCG--GG-TTCTTCC
T ss_pred cCCcCEEEe-eCCCccCchhhhccCCCCEE--EccCCcCCCChh---HccCCCCCEEEccCCcCCCch--hh-cCCCCCC
Confidence 456777777 66555544455567777777 7766 333221 667777777777776533221 11 1235677
Q ss_pred eEEEeeecCccccccCceeEEEecCCceEEEeeccccCce-eecCCCCeeEEEEEEEeCccccCCCccchHHhhcCCCce
Q 047191 201 QCTLWVETEGEMFTQAEYKVRITAPSLERLHIMSDIFGKF-VVHDLNSLTDVILDIVYGEWSRVDPNRSIQLLQQLNNTT 279 (341)
Q Consensus 201 ~L~i~~c~~~~~~~~~~~~~~~~~p~L~~l~~~~~~~~~~-~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~ 279 (341)
.|.+.+|.-... .. ....++|++|.+.+...... .+..+++|+.+++.-.... ....+..+++++
T Consensus 111 ~L~l~~n~l~~~-----~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~--------~~~~l~~l~~L~ 176 (308)
T 1h6u_A 111 TLDLTSTQITDV-----TP-LAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVS--------DLTPLANLSKLT 176 (308)
T ss_dssp EEECTTSCCCCC-----GG-GTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCC--------CCGGGTTCTTCC
T ss_pred EEECCCCCCCCc-----hh-hcCCCCCCEEECCCCccCcCccccCCCCccEEEccCCcCC--------CChhhcCCCCCC
Confidence 777766321111 11 12356777777776544322 2556677777665322111 111266778888
Q ss_pred EEEEecchhhhccccccCCCCCCCcccEEEEEEc-CCChhHHHHHHhcCCCCCcEEEeeeee
Q 047191 280 SLTVSYGVLCALDHAYHKWFPALSYLQHLEVAVG-AIGWAVLPVILSSSVHLQSLVLRKVII 340 (341)
Q Consensus 280 ~L~l~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~-~~~~~~l~~ll~~cp~L~~L~l~~~~~ 340 (341)
.|.++.+.+..+. . +..+++|++|++..+ -.+... +..+|+|+.|.+.+-.|
T Consensus 177 ~L~l~~n~l~~~~--~---l~~l~~L~~L~L~~N~l~~~~~----l~~l~~L~~L~l~~N~i 229 (308)
T 1h6u_A 177 TLKADDNKISDIS--P---LASLPNLIEVHLKNNQISDVSP----LANTSNLFIVTLTNQTI 229 (308)
T ss_dssp EEECCSSCCCCCG--G---GGGCTTCCEEECTTSCCCBCGG----GTTCTTCCEEEEEEEEE
T ss_pred EEECCCCccCcCh--h---hcCCCCCCEEEccCCccCcccc----ccCCCCCCEEEccCCee
Confidence 8888776554321 1 235667888888776 222221 57788888888876443
No 14
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=98.50 E-value=3.8e-07 Score=87.57 Aligned_cols=210 Identities=12% Similarity=0.094 Sum_probs=127.5
Q ss_pred cccccccCcceEEEEeeeeeecc-CC-CcccCCchhhhhhhccC--CCcchHHHHHhcCCccceeEEeeeecCCCCceeE
Q 047191 117 QIELYASPSVEVLKLMSDFLLKV-PA-GGTCFPNVKILTMQLES--PDNILTEKLFCSCPSLEELSIQAYLNDEGPTTKF 192 (341)
Q Consensus 117 p~~~~~~~~L~~L~L~~~~~l~~-~~-~~~~~~~L~~L~~~L~~--~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~l 192 (341)
|..+..+++|++|+| ++..+.. ++ ...++++|++| +|.+ ++.. ....+.++++|+.|++.++.-.....+..
T Consensus 43 ~~~~~~l~~L~~L~L-s~n~i~~~~~~~~~~l~~L~~L--~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 118 (549)
T 2z81_A 43 HGDLRACANLQVLIL-KSSRINTIEGDAFYSLGSLEHL--DLSDNHLSSL-SSSWFGPLSSLKYLNLMGNPYQTLGVTSL 118 (549)
T ss_dssp SSTTSSCTTCCEEEC-TTSCCCEECTTTTTTCTTCCEE--ECTTSCCCSC-CHHHHTTCTTCCEEECTTCCCSSSCSSCS
T ss_pred hhhhhcCCcccEEEC-CCCCcCccChhhccccccCCEE--ECCCCccCcc-CHHHhccCCCCcEEECCCCcccccchhhh
Confidence 455667899999999 7655533 32 35578999999 9988 4433 33447889999999999885432110011
Q ss_pred EEeCCCcceEEEeeecCccccccCceeEEEecCCceEEEeeccccCce---eecCCCCeeEEEEEEEeCccccCCCccch
Q 047191 193 VISSSTLKQCTLWVETEGEMFTQAEYKVRITAPSLERLHIMSDIFGKF---VVHDLNSLTDVILDIVYGEWSRVDPNRSI 269 (341)
Q Consensus 193 ~i~~~sL~~L~i~~c~~~~~~~~~~~~~~~~~p~L~~l~~~~~~~~~~---~~~~~~~L~~~~l~~~~~~~~~~~~~~~~ 269 (341)
.-..++|+.|.+..|...+... .......++|++|.+.+...... .+..+++|+.+.+....... + ..
T Consensus 119 ~~~l~~L~~L~L~~n~~~~~~~---~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~--~----~~ 189 (549)
T 2z81_A 119 FPNLTNLQTLRIGNVETFSEIR---RIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAF--L----LE 189 (549)
T ss_dssp CTTCTTCCEEEEEESSSCCEEC---TTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTT--H----HH
T ss_pred hhccCCccEEECCCCccccccC---HhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccc--c----ch
Confidence 2245689999998853111100 00011367899999987654432 35566777777765332111 0 04
Q ss_pred HHhhcCCCceEEEEecchhhhccccccCCCCCCCcccEEEEEEcCC---ChhHHHHHHhcCCCCCcEEEeeee
Q 047191 270 QLLQQLNNTTSLTVSYGVLCALDHAYHKWFPALSYLQHLEVAVGAI---GWAVLPVILSSSVHLQSLVLRKVI 339 (341)
Q Consensus 270 ~~l~~~~~l~~L~l~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~---~~~~l~~ll~~cp~L~~L~l~~~~ 339 (341)
.+...+++++.|.++.+.+.............+++|++|++..+.. ....+...++.+++|+.|.+.+..
T Consensus 190 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~ 262 (549)
T 2z81_A 190 IFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCT 262 (549)
T ss_dssp HHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCE
T ss_pred hhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccccccc
Confidence 4556789999999998766543211111122467888888887622 233455556667777777776543
No 15
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.48 E-value=6.3e-08 Score=91.34 Aligned_cols=188 Identities=19% Similarity=0.132 Sum_probs=107.5
Q ss_pred ccccCcceEEEEeeeeeeccCCCcccCCchhhhhhhccC--CCcchHHHHHhcCCccceeEEeeeecCCCCceeEEEeCC
Q 047191 120 LYASPSVEVLKLMSDFLLKVPAGGTCFPNVKILTMQLES--PDNILTEKLFCSCPSLEELSIQAYLNDEGPTTKFVISSS 197 (341)
Q Consensus 120 ~~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~~~L~~--~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~l~i~~~ 197 (341)
+..+++|++|++ .++.+...+....+++|++| +|.+ +++-. . +..+++|+.|++.+|.-.... . .-..+
T Consensus 86 ~~~l~~L~~L~l-~~n~l~~~~~~~~l~~L~~L--~L~~n~l~~~~--~-~~~l~~L~~L~l~~n~l~~~~--~-~~~l~ 156 (466)
T 1o6v_A 86 LKNLTKLVDILM-NNNQIADITPLANLTNLTGL--TLFNNQITDID--P-LKNLTNLNRLELSSNTISDIS--A-LSGLT 156 (466)
T ss_dssp GTTCTTCCEEEC-CSSCCCCCGGGTTCTTCCEE--ECCSSCCCCCG--G-GTTCTTCSEEEEEEEEECCCG--G-GTTCT
T ss_pred hhccccCCEEEC-CCCccccChhhcCCCCCCEE--ECCCCCCCCCh--H-HcCCCCCCEEECCCCccCCCh--h-hccCC
Confidence 555677777777 55555433235556777777 7766 33321 1 566777777777776543222 1 11335
Q ss_pred CcceEEEeeecCccccccCceeEEEecCCceEEEeeccccCce-eecCCCCeeEEEEEEEeCccccCCCccchHHhhcCC
Q 047191 198 TLKQCTLWVETEGEMFTQAEYKVRITAPSLERLHIMSDIFGKF-VVHDLNSLTDVILDIVYGEWSRVDPNRSIQLLQQLN 276 (341)
Q Consensus 198 sL~~L~i~~c~~~~~~~~~~~~~~~~~p~L~~l~~~~~~~~~~-~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~l~~~~ 276 (341)
+|+.|.+..+ ... ... ....++|++|.+++...... .+..+++|+.+.+.-..... ..-+..++
T Consensus 157 ~L~~L~l~~~-~~~-----~~~-~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~--------~~~~~~l~ 221 (466)
T 1o6v_A 157 SLQQLSFGNQ-VTD-----LKP-LANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISD--------ITPLGILT 221 (466)
T ss_dssp TCSEEEEEES-CCC-----CGG-GTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCC--------CGGGGGCT
T ss_pred cccEeecCCc-ccC-----chh-hccCCCCCEEECcCCcCCCChhhccCCCCCEEEecCCcccc--------cccccccC
Confidence 6777776541 111 001 12357788888776654332 35566777776654221111 11255678
Q ss_pred CceEEEEecchhhhccccccCCCCCCCcccEEEEEEc-CCChhHHHHHHhcCCCCCcEEEeeeee
Q 047191 277 NTTSLTVSYGVLCALDHAYHKWFPALSYLQHLEVAVG-AIGWAVLPVILSSSVHLQSLVLRKVII 340 (341)
Q Consensus 277 ~l~~L~l~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~-~~~~~~l~~ll~~cp~L~~L~l~~~~~ 340 (341)
+++.|.++.+.+..+ ..+..+++|++|++..+ -.+... +..+|+|+.|.+.+-.|
T Consensus 222 ~L~~L~l~~n~l~~~-----~~l~~l~~L~~L~l~~n~l~~~~~----~~~l~~L~~L~l~~n~l 277 (466)
T 1o6v_A 222 NLDELSLNGNQLKDI-----GTLASLTNLTDLDLANNQISNLAP----LSGLTKLTELKLGANQI 277 (466)
T ss_dssp TCCEEECCSSCCCCC-----GGGGGCTTCSEEECCSSCCCCCGG----GTTCTTCSEEECCSSCC
T ss_pred CCCEEECCCCCcccc-----hhhhcCCCCCEEECCCCccccchh----hhcCCCCCEEECCCCcc
Confidence 888888887654332 12335778999998887 222222 77889999998876433
No 16
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.48 E-value=5.3e-08 Score=88.67 Aligned_cols=164 Identities=13% Similarity=0.062 Sum_probs=89.0
Q ss_pred cCCchhhhhhhccC----------CCcchHHHHHhcCCccceeEEeeeecCCCCceeEEEeCCCcceEEEeeecCccccc
Q 047191 145 CFPNVKILTMQLES----------PDNILTEKLFCSCPSLEELSIQAYLNDEGPTTKFVISSSTLKQCTLWVETEGEMFT 214 (341)
Q Consensus 145 ~~~~L~~L~~~L~~----------~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~l~i~~~sL~~L~i~~c~~~~~~~ 214 (341)
.|++|+.| .+.. ++..++..++..+|.||+|.|.++.+.... . +..++|+.|++..| ....
T Consensus 137 ~l~~L~~L--~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~--~--~~~~~L~~L~L~~~---~l~~ 207 (362)
T 2ra8_A 137 KFAHFEGL--FWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIG--K--KPRPNLKSLEIISG---GLPD 207 (362)
T ss_dssp HHTTCSEE--EECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCC--S--CBCTTCSEEEEECS---BCCH
T ss_pred hcchhhhe--eecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceec--c--ccCCCCcEEEEecC---CCCh
Confidence 46778888 7754 123458899999999999999998554434 3 45789999999874 2111
Q ss_pred cCceeEE-EecCCceEEEeeccc---cCceeecCCCCeeEEEEEEEeCccccCCCccchHHh--hcCCCceEEEEecchh
Q 047191 215 QAEYKVR-ITAPSLERLHIMSDI---FGKFVVHDLNSLTDVILDIVYGEWSRVDPNRSIQLL--QQLNNTTSLTVSYGVL 288 (341)
Q Consensus 215 ~~~~~~~-~~~p~L~~l~~~~~~---~~~~~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~l--~~~~~l~~L~l~~~~~ 288 (341)
.....+. ...|+|++|.++... .....+..+ ...+ ..+++++.|.+..+.+
T Consensus 208 ~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l-----------------------~~~l~~~~~p~Lr~L~L~~~~i 264 (362)
T 2ra8_A 208 SVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVF-----------------------RPLFSKDRFPNLKWLGIVDAEE 264 (362)
T ss_dssp HHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGT-----------------------GGGSCTTTCTTCCEEEEESCTT
T ss_pred HHHHHHHHccCCCCcEEEEeccccccccchhHHHH-----------------------HHHHhcCCCCCcCEEeCCCCCC
Confidence 1111111 146888888875210 000000000 1111 2456777777765433
Q ss_pred hhccccccCCCCCCCcccEEEEEEcCCChhHH---HHHHhcCCCCCcEEEeeeee
Q 047191 289 CALDHAYHKWFPALSYLQHLEVAVGAIGWAVL---PVILSSSVHLQSLVLRKVII 340 (341)
Q Consensus 289 ~~~~~~~~~~~~~f~~L~~L~l~~~~~~~~~l---~~ll~~cp~L~~L~l~~~~~ 340 (341)
...........|.+++|++|+|+.+..+..+. ..-++.+|+|+.|++.+-.|
T Consensus 265 ~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i 319 (362)
T 2ra8_A 265 QNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYL 319 (362)
T ss_dssp HHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBC
T ss_pred chHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcC
Confidence 21000001112456677777776554444333 33335567777777765444
No 17
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=98.46 E-value=3.7e-08 Score=90.58 Aligned_cols=103 Identities=16% Similarity=0.087 Sum_probs=53.2
Q ss_pred CCceEEEeeccccCc-eeecCCCCeeEEEEEEEeCccccCCCccchHHhhcCCCceEEEEecchhhhccccccCCCCCCC
Q 047191 225 PSLERLHIMSDIFGK-FVVHDLNSLTDVILDIVYGEWSRVDPNRSIQLLQQLNNTTSLTVSYGVLCALDHAYHKWFPALS 303 (341)
Q Consensus 225 p~L~~l~~~~~~~~~-~~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~L~l~~~~~~~~~~~~~~~~~~f~ 303 (341)
++|++|.+.+..... ..+..+++|+++++........ ....+..+++++.|.++.+.+..+. .....++
T Consensus 226 ~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~------~~~~~~~l~~L~~L~L~~n~l~~~~----~~~~~l~ 295 (390)
T 3o6n_A 226 VELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKI------MYHPFVKMQRLERLYISNNRLVALN----LYGQPIP 295 (390)
T ss_dssp SSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEE------ESGGGTTCSSCCEEECCSSCCCEEE----CSSSCCT
T ss_pred ccccEEECCCCCCcccHHHcCCCCccEEECCCCcCCCc------ChhHccccccCCEEECCCCcCcccC----cccCCCC
Confidence 345555555443322 1244555666555432111100 0334556677777777766543321 1122567
Q ss_pred cccEEEEEEcCCChhHHHHHHhcCCCCCcEEEeeee
Q 047191 304 YLQHLEVAVGAIGWAVLPVILSSSVHLQSLVLRKVI 339 (341)
Q Consensus 304 ~L~~L~l~~~~~~~~~l~~ll~~cp~L~~L~l~~~~ 339 (341)
+|++|++..+... .+..-+..+|+|+.|++.+-.
T Consensus 296 ~L~~L~L~~n~l~--~~~~~~~~l~~L~~L~L~~N~ 329 (390)
T 3o6n_A 296 TLKVLDLSHNHLL--HVERNQPQFDRLENLYLDHNS 329 (390)
T ss_dssp TCCEEECCSSCCC--CCGGGHHHHTTCSEEECCSSC
T ss_pred CCCEEECCCCcce--ecCccccccCcCCEEECCCCc
Confidence 8888888887211 111224567899999887643
No 18
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.44 E-value=1.2e-07 Score=89.49 Aligned_cols=188 Identities=19% Similarity=0.160 Sum_probs=127.3
Q ss_pred ccccCcceEEEEeeeeeeccCCCcccCCchhhhhhhccC--CCcchHHHHHhcCCccceeEEeeeecCCCCceeEEEeCC
Q 047191 120 LYASPSVEVLKLMSDFLLKVPAGGTCFPNVKILTMQLES--PDNILTEKLFCSCPSLEELSIQAYLNDEGPTTKFVISSS 197 (341)
Q Consensus 120 ~~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~~~L~~--~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~l~i~~~ 197 (341)
+..+++|++|++ +++.+...+....+++|+.| ++.+ +++-. -+.++++|+.|.+.+.... .. . --..+
T Consensus 108 ~~~l~~L~~L~L-~~n~l~~~~~~~~l~~L~~L--~l~~n~l~~~~---~~~~l~~L~~L~l~~~~~~-~~--~-~~~l~ 177 (466)
T 1o6v_A 108 LANLTNLTGLTL-FNNQITDIDPLKNLTNLNRL--ELSSNTISDIS---ALSGLTSLQQLSFGNQVTD-LK--P-LANLT 177 (466)
T ss_dssp GTTCTTCCEEEC-CSSCCCCCGGGTTCTTCSEE--EEEEEEECCCG---GGTTCTTCSEEEEEESCCC-CG--G-GTTCT
T ss_pred hcCCCCCCEEEC-CCCCCCCChHHcCCCCCCEE--ECCCCccCCCh---hhccCCcccEeecCCcccC-ch--h-hccCC
Confidence 667899999999 87776555456678999999 9988 44321 2788999999999754322 11 1 11447
Q ss_pred CcceEEEeeecCccccccCceeEEEecCCceEEEeeccccCce-eecCCCCeeEEEEEEEeCccccCCCccchHHhhcCC
Q 047191 198 TLKQCTLWVETEGEMFTQAEYKVRITAPSLERLHIMSDIFGKF-VVHDLNSLTDVILDIVYGEWSRVDPNRSIQLLQQLN 276 (341)
Q Consensus 198 sL~~L~i~~c~~~~~~~~~~~~~~~~~p~L~~l~~~~~~~~~~-~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~l~~~~ 276 (341)
+|+.|.+.+|.-... .. ....++|++|.+.+...... .+..+++|+++++.-..... ...+..++
T Consensus 178 ~L~~L~l~~n~l~~~-----~~-l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~--------~~~l~~l~ 243 (466)
T 1o6v_A 178 TLERLDISSNKVSDI-----SV-LAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKD--------IGTLASLT 243 (466)
T ss_dssp TCCEEECCSSCCCCC-----GG-GGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCC--------CGGGGGCT
T ss_pred CCCEEECcCCcCCCC-----hh-hccCCCCCEEEecCCcccccccccccCCCCEEECCCCCccc--------chhhhcCC
Confidence 899999988532111 11 12468999999987764432 35678889988774321111 34567889
Q ss_pred CceEEEEecchhhhccccccCCCCCCCcccEEEEEEc-CCChhHHHHHHhcCCCCCcEEEeeeee
Q 047191 277 NTTSLTVSYGVLCALDHAYHKWFPALSYLQHLEVAVG-AIGWAVLPVILSSSVHLQSLVLRKVII 340 (341)
Q Consensus 277 ~l~~L~l~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~-~~~~~~l~~ll~~cp~L~~L~l~~~~~ 340 (341)
+++.|.++.+.+.... .+..+++|++|++..+ -.+... +..+|+|+.|++.+-.+
T Consensus 244 ~L~~L~l~~n~l~~~~-----~~~~l~~L~~L~l~~n~l~~~~~----~~~l~~L~~L~L~~n~l 299 (466)
T 1o6v_A 244 NLTDLDLANNQISNLA-----PLSGLTKLTELKLGANQISNISP----LAGLTALTNLELNENQL 299 (466)
T ss_dssp TCSEEECCSSCCCCCG-----GGTTCTTCSEEECCSSCCCCCGG----GTTCTTCSEEECCSSCC
T ss_pred CCCEEECCCCccccch-----hhhcCCCCCEEECCCCccCcccc----ccCCCccCeEEcCCCcc
Confidence 9999999987654321 1346789999999887 222222 77899999999876443
No 19
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=98.37 E-value=5.1e-08 Score=85.67 Aligned_cols=195 Identities=18% Similarity=0.098 Sum_probs=92.5
Q ss_pred CcceEEEEeeeeeecc-CC-CcccCCchhhhhhhccC--CCcchHHHHHhcCCccceeEEeeee-cCCCCceeEEEeCCC
Q 047191 124 PSVEVLKLMSDFLLKV-PA-GGTCFPNVKILTMQLES--PDNILTEKLFCSCPSLEELSIQAYL-NDEGPTTKFVISSST 198 (341)
Q Consensus 124 ~~L~~L~L~~~~~l~~-~~-~~~~~~~L~~L~~~L~~--~~~~~l~~ll~~cp~Le~L~L~~c~-~~~~~~~~l~i~~~s 198 (341)
++|++|+| ++..+.. ++ ....+++|++| .|.+ ++.-. ...+.+++.|+.|++.++. -....+ ...-..++
T Consensus 32 ~~l~~L~l-~~n~i~~~~~~~~~~~~~L~~L--~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~~l~~~~~-~~~~~l~~ 106 (285)
T 1ozn_A 32 AASQRIFL-HGNRISHVPAASFRACRNLTIL--WLHSNVLARID-AAAFTGLALLEQLDLSDNAQLRSVDP-ATFHGLGR 106 (285)
T ss_dssp TTCSEEEC-TTSCCCEECTTTTTTCTTCCEE--ECCSSCCCEEC-TTTTTTCTTCCEEECCSCTTCCCCCT-TTTTTCTT
T ss_pred CCceEEEe-eCCcCCccCHHHcccCCCCCEE--ECCCCccceeC-HhhcCCccCCCEEeCCCCCCccccCH-HHhcCCcC
Confidence 45666666 5444432 21 23456666666 6665 33211 1224556677777766664 211100 00112356
Q ss_pred cceEEEeeecCccccccCceeEEEecCCceEEEeeccccCce---eecCCCCeeEEEEEEEeCccccCCCccchHHhhcC
Q 047191 199 LKQCTLWVETEGEMFTQAEYKVRITAPSLERLHIMSDIFGKF---VVHDLNSLTDVILDIVYGEWSRVDPNRSIQLLQQL 275 (341)
Q Consensus 199 L~~L~i~~c~~~~~~~~~~~~~~~~~p~L~~l~~~~~~~~~~---~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~l~~~ 275 (341)
|+.|.+.+|.-... .....-..++|++|.+.+...... .+..+++|+.+++.-..... .. ...+..+
T Consensus 107 L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~----~~~~~~l 176 (285)
T 1ozn_A 107 LHTLHLDRCGLQEL----GPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS--VP----ERAFRGL 176 (285)
T ss_dssp CCEEECTTSCCCCC----CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCE--EC----TTTTTTC
T ss_pred CCEEECCCCcCCEE----CHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccc--cC----HHHhcCc
Confidence 66666665311110 000011246677777665543322 14456666665553211110 00 3335566
Q ss_pred CCceEEEEecchhhhccccccCCCCCCCcccEEEEEEcCCChhHHHHHHhcCCCCCcEEEee
Q 047191 276 NNTTSLTVSYGVLCALDHAYHKWFPALSYLQHLEVAVGAIGWAVLPVILSSSVHLQSLVLRK 337 (341)
Q Consensus 276 ~~l~~L~l~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~~~~~l~~ll~~cp~L~~L~l~~ 337 (341)
++++.|.++.+.+..+ ....+..+++|++|++..+.... .....+..+|+|+.|++.+
T Consensus 177 ~~L~~L~l~~n~l~~~---~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~ 234 (285)
T 1ozn_A 177 HSLDRLLLHQNRVAHV---HPHAFRDLGRLMTLYLFANNLSA-LPTEALAPLRALQYLRLND 234 (285)
T ss_dssp TTCCEEECCSSCCCEE---CTTTTTTCTTCCEEECCSSCCSC-CCHHHHTTCTTCCEEECCS
T ss_pred cccCEEECCCCccccc---CHhHccCcccccEeeCCCCcCCc-CCHHHcccCcccCEEeccC
Confidence 7777777776654322 11223356677777777652111 1123456677777777654
No 20
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.37 E-value=7.3e-08 Score=90.73 Aligned_cols=179 Identities=12% Similarity=0.008 Sum_probs=89.1
Q ss_pred ccccCcceEEEEeeeeeeccCCCcccCCchhhhhhhccC--CCcchHHHHHhcCCccceeEEeeeecCCCCceeEEEeCC
Q 047191 120 LYASPSVEVLKLMSDFLLKVPAGGTCFPNVKILTMQLES--PDNILTEKLFCSCPSLEELSIQAYLNDEGPTTKFVISSS 197 (341)
Q Consensus 120 ~~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~~~L~~--~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~l~i~~~ 197 (341)
+..+++|++|+| +++.+...+ ...+++|+.| +|.+ ++.-. +.++++|+.|++.++.-.++. --..+
T Consensus 60 l~~l~~L~~L~L-s~n~l~~~~-~~~l~~L~~L--~Ls~N~l~~~~----~~~l~~L~~L~L~~N~l~~l~----~~~l~ 127 (457)
T 3bz5_A 60 IEKLTGLTKLIC-TSNNITTLD-LSQNTNLTYL--ACDSNKLTNLD----VTPLTKLTYLNCDTNKLTKLD----VSQNP 127 (457)
T ss_dssp GGGCTTCSEEEC-CSSCCSCCC-CTTCTTCSEE--ECCSSCCSCCC----CTTCTTCCEEECCSSCCSCCC----CTTCT
T ss_pred hcccCCCCEEEc-cCCcCCeEc-cccCCCCCEE--ECcCCCCceee----cCCCCcCCEEECCCCcCCeec----CCCCC
Confidence 344555555555 444443331 3345555555 5555 33321 445555666655555322111 01224
Q ss_pred CcceEEEeeecCccccccCceeEEE-ecCCceEEEeecc-ccCceeecCCCCeeEEEEEEEeCccccCCCccchHHhhcC
Q 047191 198 TLKQCTLWVETEGEMFTQAEYKVRI-TAPSLERLHIMSD-IFGKFVVHDLNSLTDVILDIVYGEWSRVDPNRSIQLLQQL 275 (341)
Q Consensus 198 sL~~L~i~~c~~~~~~~~~~~~~~~-~~p~L~~l~~~~~-~~~~~~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~l~~~ 275 (341)
+|+.|.+..+. . ..+.+ ..++|++|.+.+. ......+..+++|+.+++....... .. +..+
T Consensus 128 ~L~~L~l~~N~---l-----~~l~l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~--------l~-l~~l 190 (457)
T 3bz5_A 128 LLTYLNCARNT---L-----TEIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITE--------LD-VSQN 190 (457)
T ss_dssp TCCEEECTTSC---C-----SCCCCTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCC--------CC-CTTC
T ss_pred cCCEEECCCCc---c-----ceeccccCCcCCEEECCCCCcccccccccCCcCCEEECCCCccce--------ec-cccC
Confidence 55555555521 1 01111 2455666666554 2223345555666655543211111 11 4456
Q ss_pred CCceEEEEecchhhhccccccCCCCCCCcccEEEEEEc-CCChhHHHHHHhcCCCCCcEEEeee
Q 047191 276 NNTTSLTVSYGVLCALDHAYHKWFPALSYLQHLEVAVG-AIGWAVLPVILSSSVHLQSLVLRKV 338 (341)
Q Consensus 276 ~~l~~L~l~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~-~~~~~~l~~ll~~cp~L~~L~l~~~ 338 (341)
++++.|.++.+.+..+ .+..+++|+.|++..+ -.+. . +..+|+|+.|++.+-
T Consensus 191 ~~L~~L~l~~N~l~~~------~l~~l~~L~~L~Ls~N~l~~i---p--~~~l~~L~~L~l~~N 243 (457)
T 3bz5_A 191 KLLNRLNCDTNNITKL------DLNQNIQLTFLDCSSNKLTEI---D--VTPLTQLTYFDCSVN 243 (457)
T ss_dssp TTCCEEECCSSCCSCC------CCTTCTTCSEEECCSSCCSCC---C--CTTCTTCSEEECCSS
T ss_pred CCCCEEECcCCcCCee------ccccCCCCCEEECcCCccccc---C--ccccCCCCEEEeeCC
Confidence 7777777776654332 1335678888888876 2222 2 677888888887653
No 21
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.33 E-value=1.2e-08 Score=93.80 Aligned_cols=210 Identities=14% Similarity=0.029 Sum_probs=123.9
Q ss_pred ccccCcceEEEEeeeeeeccC----C-C-------cccCCchhhhhhhccC--CCcch---HHHHHhcCCccceeEEeee
Q 047191 120 LYASPSVEVLKLMSDFLLKVP----A-G-------GTCFPNVKILTMQLES--PDNIL---TEKLFCSCPSLEELSIQAY 182 (341)
Q Consensus 120 ~~~~~~L~~L~L~~~~~l~~~----~-~-------~~~~~~L~~L~~~L~~--~~~~~---l~~ll~~cp~Le~L~L~~c 182 (341)
+..+++|++|+| +++.+... | . ...+++|++| +|.+ +++.+ +...+..|++|+.|+|.+|
T Consensus 56 l~~~~~L~~L~L-s~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L--~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n 132 (386)
T 2ca6_A 56 IASKKDLEIAEF-SDIFTGRVKDEIPEALRLLLQALLKCPKLHTV--RLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNN 132 (386)
T ss_dssp TTTCTTCCEEEC-CSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEE--ECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSS
T ss_pred HHhCCCccEEeC-cccccCccccchhHHHHHHHHHHhhCCcccEE--ECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCC
Confidence 445788999999 66533211 1 1 1357899999 8888 66553 4455788999999999888
Q ss_pred ecCCCCceeEEE-----eC---------CCcceEEEeeecCccccccCce---eEEEecCCceEEEeeccccCce-----
Q 047191 183 LNDEGPTTKFVI-----SS---------STLKQCTLWVETEGEMFTQAEY---KVRITAPSLERLHIMSDIFGKF----- 240 (341)
Q Consensus 183 ~~~~~~~~~l~i-----~~---------~sL~~L~i~~c~~~~~~~~~~~---~~~~~~p~L~~l~~~~~~~~~~----- 240 (341)
.-.... ...+ .. ++|+.|.+..|.-.. .... ...-..++|++|.+.+......
T Consensus 133 ~l~~~~--~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~---~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l 207 (386)
T 2ca6_A 133 GLGPQA--GAKIARALQELAVNKKAKNAPPLRSIICGRNRLEN---GSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHL 207 (386)
T ss_dssp CCHHHH--HHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTG---GGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHH
T ss_pred CCCHHH--HHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCc---HHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHH
Confidence 532100 0011 11 689999988842110 1111 1112467899999987654411
Q ss_pred ---eecCCCCeeEEEEEEEeCccccCCCccc-hHHhhcCCCceEEEEecchhhhccccc-cCCC--CCCCcccEEEEEEc
Q 047191 241 ---VVHDLNSLTDVILDIVYGEWSRVDPNRS-IQLLQQLNNTTSLTVSYGVLCALDHAY-HKWF--PALSYLQHLEVAVG 313 (341)
Q Consensus 241 ---~~~~~~~L~~~~l~~~~~~~~~~~~~~~-~~~l~~~~~l~~L~l~~~~~~~~~~~~-~~~~--~~f~~L~~L~l~~~ 313 (341)
.+..+++|+.+++......... ... ...+..+++++.|.++.+.+....... ...+ ..+++|++|+|..+
T Consensus 208 ~~~~l~~~~~L~~L~Ls~n~l~~~g---~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n 284 (386)
T 2ca6_A 208 LLEGLAYCQELKVLDLQDNTFTHLG---SSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYN 284 (386)
T ss_dssp HHTTGGGCTTCCEEECCSSCCHHHH---HHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSS
T ss_pred HHHHhhcCCCccEEECcCCCCCcHH---HHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCC
Confidence 3557788888776432211000 001 445678899999999877653221000 1111 13678999999887
Q ss_pred CCCh---hHHHHHH-hcCCCCCcEEEeeeee
Q 047191 314 AIGW---AVLPVIL-SSSVHLQSLVLRKVII 340 (341)
Q Consensus 314 ~~~~---~~l~~ll-~~cp~L~~L~l~~~~~ 340 (341)
.... ..+...+ .++|+|+.|++.+-.|
T Consensus 285 ~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l 315 (386)
T 2ca6_A 285 EIELDAVRTLKTVIDEKMPDLLFLELNGNRF 315 (386)
T ss_dssp CCBHHHHHHHHHHHHHHCTTCCEEECTTSBS
T ss_pred cCCHHHHHHHHHHHHhcCCCceEEEccCCcC
Confidence 4433 2344544 6689999999876443
No 22
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=98.31 E-value=5.9e-08 Score=91.14 Aligned_cols=39 Identities=26% Similarity=0.418 Sum_probs=19.4
Q ss_pred hhcCCCceEEEEecchhhhccccccCCCCCCCcccEEEEEEc
Q 047191 272 LQQLNNTTSLTVSYGVLCALDHAYHKWFPALSYLQHLEVAVG 313 (341)
Q Consensus 272 l~~~~~l~~L~l~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~ 313 (341)
+.++++++.|.++.+.+..+. ...+..+++|++|+|..+
T Consensus 262 ~~~l~~L~~L~L~~N~l~~~~---~~~~~~l~~L~~L~L~~N 300 (452)
T 3zyi_A 262 FDGLASLVELNLAHNNLSSLP---HDLFTPLRYLVELHLHHN 300 (452)
T ss_dssp TTTCTTCCEEECCSSCCSCCC---TTSSTTCTTCCEEECCSS
T ss_pred hcCCCCCCEEECCCCcCCccC---hHHhccccCCCEEEccCC
Confidence 445566666666655443221 111224556666666654
No 23
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.30 E-value=1.5e-07 Score=84.07 Aligned_cols=54 Identities=24% Similarity=0.218 Sum_probs=24.1
Q ss_pred CcceEEEEeeeeeeccCC--CcccCCchhhhhhhccC--CCcchHHHHHhcCCccceeEEeeee
Q 047191 124 PSVEVLKLMSDFLLKVPA--GGTCFPNVKILTMQLES--PDNILTEKLFCSCPSLEELSIQAYL 183 (341)
Q Consensus 124 ~~L~~L~L~~~~~l~~~~--~~~~~~~L~~L~~~L~~--~~~~~l~~ll~~cp~Le~L~L~~c~ 183 (341)
++|++|+| ++..+...+ ....+++|++| .|.+ ++... . +..+++|+.|++.++.
T Consensus 34 ~~L~~L~L-~~n~l~~~~~~~~~~l~~L~~L--~Ls~n~l~~~~--~-~~~l~~L~~L~Ls~n~ 91 (317)
T 3o53_A 34 WNVKELDL-SGNPLSQISAADLAPFTKLELL--NLSSNVLYETL--D-LESLSTLRTLDLNNNY 91 (317)
T ss_dssp GGCSEEEC-TTSCCCCCCHHHHTTCTTCCEE--ECTTSCCEEEE--E-ETTCTTCCEEECCSSE
T ss_pred CCCCEEEC-cCCccCcCCHHHhhCCCcCCEE--ECCCCcCCcch--h-hhhcCCCCEEECcCCc
Confidence 34555555 444333221 12345555555 5555 22111 0 4455555555555543
No 24
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.30 E-value=2.5e-07 Score=87.09 Aligned_cols=179 Identities=16% Similarity=0.066 Sum_probs=116.9
Q ss_pred ccccCcceEEEEeeeeeeccCCCcccCCchhhhhhhccC--CCcchHHHHHhcCCccceeEEeeeecCCCCceeEEEeCC
Q 047191 120 LYASPSVEVLKLMSDFLLKVPAGGTCFPNVKILTMQLES--PDNILTEKLFCSCPSLEELSIQAYLNDEGPTTKFVISSS 197 (341)
Q Consensus 120 ~~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~~~L~~--~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~l~i~~~ 197 (341)
+..+++|+.|++ +++.+... ...++++|+.| .|.+ ++.-. +..+++|+.|.+.++.-.++. --..+
T Consensus 81 ~~~l~~L~~L~L-s~N~l~~~-~~~~l~~L~~L--~L~~N~l~~l~----~~~l~~L~~L~l~~N~l~~l~----l~~l~ 148 (457)
T 3bz5_A 81 LSQNTNLTYLAC-DSNKLTNL-DVTPLTKLTYL--NCDTNKLTKLD----VSQNPLLTYLNCARNTLTEID----VSHNT 148 (457)
T ss_dssp CTTCTTCSEEEC-CSSCCSCC-CCTTCTTCCEE--ECCSSCCSCCC----CTTCTTCCEEECTTSCCSCCC----CTTCT
T ss_pred cccCCCCCEEEC-cCCCCcee-ecCCCCcCCEE--ECCCCcCCeec----CCCCCcCCEEECCCCccceec----cccCC
Confidence 566789999999 77666555 35678899999 8888 54432 678899999999887543211 11346
Q ss_pred CcceEEEeeecCccccccCceeEEEecCCceEEEeeccccCceeecCCCCeeEEEEEEEeCccccCCCccchHHhhcCCC
Q 047191 198 TLKQCTLWVETEGEMFTQAEYKVRITAPSLERLHIMSDIFGKFVVHDLNSLTDVILDIVYGEWSRVDPNRSIQLLQQLNN 277 (341)
Q Consensus 198 sL~~L~i~~c~~~~~~~~~~~~~~~~~p~L~~l~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~l~~~~~ 277 (341)
+|+.|.+..|...+. . -....++|++|.+++.....+.+..+++|+.+.+....... . -+..+++
T Consensus 149 ~L~~L~l~~n~~~~~----~--~~~~l~~L~~L~ls~n~l~~l~l~~l~~L~~L~l~~N~l~~--------~-~l~~l~~ 213 (457)
T 3bz5_A 149 QLTELDCHLNKKITK----L--DVTPQTQLTTLDCSFNKITELDVSQNKLLNRLNCDTNNITK--------L-DLNQNIQ 213 (457)
T ss_dssp TCCEEECTTCSCCCC----C--CCTTCTTCCEEECCSSCCCCCCCTTCTTCCEEECCSSCCSC--------C-CCTTCTT
T ss_pred cCCEEECCCCCcccc----c--ccccCCcCCEEECCCCccceeccccCCCCCEEECcCCcCCe--------e-ccccCCC
Confidence 788888887422111 0 01136889999998776655557778888887764321111 1 1456788
Q ss_pred ceEEEEecchhhhccccccCCCCCCCcccEEEEEEcC-CChhHHHHHHhcCCCCCcEEEe
Q 047191 278 TTSLTVSYGVLCALDHAYHKWFPALSYLQHLEVAVGA-IGWAVLPVILSSSVHLQSLVLR 336 (341)
Q Consensus 278 l~~L~l~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~-~~~~~l~~ll~~cp~L~~L~l~ 336 (341)
++.|.++.+.+..+. +..+++|+.|++..+. .+.. +..+++|+.|.+.
T Consensus 214 L~~L~Ls~N~l~~ip------~~~l~~L~~L~l~~N~l~~~~-----~~~l~~L~~L~l~ 262 (457)
T 3bz5_A 214 LTFLDCSSNKLTEID------VTPLTQLTYFDCSVNPLTELD-----VSTLSKLTTLHCI 262 (457)
T ss_dssp CSEEECCSSCCSCCC------CTTCTTCSEEECCSSCCSCCC-----CTTCTTCCEEECT
T ss_pred CCEEECcCCcccccC------ccccCCCCEEEeeCCcCCCcC-----HHHCCCCCEEecc
Confidence 999999887654321 3367789999988872 2211 4567777777543
No 25
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.29 E-value=1.1e-07 Score=92.44 Aligned_cols=102 Identities=16% Similarity=0.094 Sum_probs=54.7
Q ss_pred CceEEEeeccccCc-eeecCCCCeeEEEEEEEeCccccCCCccchHHhhcCCCceEEEEecchhhhccccccCCCCCCCc
Q 047191 226 SLERLHIMSDIFGK-FVVHDLNSLTDVILDIVYGEWSRVDPNRSIQLLQQLNNTTSLTVSYGVLCALDHAYHKWFPALSY 304 (341)
Q Consensus 226 ~L~~l~~~~~~~~~-~~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~L~l~~~~~~~~~~~~~~~~~~f~~ 304 (341)
+|+.|.+.+..... ..+..+++|+.+++........ ....+..+++++.|.++.+.+..+. .....+++
T Consensus 233 ~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~------~~~~~~~l~~L~~L~Ls~N~l~~l~----~~~~~l~~ 302 (597)
T 3oja_B 233 ELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKI------MYHPFVKMQRLERLYISNNRLVALN----LYGQPIPT 302 (597)
T ss_dssp CCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEE------ESGGGTTCSSCCEEECTTSCCCEEE----CSSSCCTT
T ss_pred CCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCC------CHHHhcCccCCCEEECCCCCCCCCC----cccccCCC
Confidence 45555555443322 2245556666655532111100 0334556777777777766544321 11224778
Q ss_pred ccEEEEEEcCCChhHHHHHHhcCCCCCcEEEeeee
Q 047191 305 LQHLEVAVGAIGWAVLPVILSSSVHLQSLVLRKVI 339 (341)
Q Consensus 305 L~~L~l~~~~~~~~~l~~ll~~cp~L~~L~l~~~~ 339 (341)
|+.|+|..+... .+..-+..+|+|+.|++.+-.
T Consensus 303 L~~L~Ls~N~l~--~i~~~~~~l~~L~~L~L~~N~ 335 (597)
T 3oja_B 303 LKVLDLSHNHLL--HVERNQPQFDRLENLYLDHNS 335 (597)
T ss_dssp CCEEECCSSCCC--CCGGGHHHHTTCSEEECCSSC
T ss_pred CcEEECCCCCCC--ccCcccccCCCCCEEECCCCC
Confidence 999999887221 122224667999999987643
No 26
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.29 E-value=2.5e-07 Score=87.82 Aligned_cols=162 Identities=12% Similarity=0.085 Sum_probs=88.3
Q ss_pred cCcceEEEEeeeeeeccCC--CcccCCchhhhhhhccC--CCcchHHHHHhcCCccceeEEeeeecCCCCceeEEEeCCC
Q 047191 123 SPSVEVLKLMSDFLLKVPA--GGTCFPNVKILTMQLES--PDNILTEKLFCSCPSLEELSIQAYLNDEGPTTKFVISSST 198 (341)
Q Consensus 123 ~~~L~~L~L~~~~~l~~~~--~~~~~~~L~~L~~~L~~--~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~l~i~~~s 198 (341)
+++|+.|+| ++..+...+ ....+++|+.| +|.+ ++...- +.+++.|+.|+|.++.-. .+. ..++
T Consensus 33 ~~~L~~L~L-s~n~l~~~~~~~~~~l~~L~~L--~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~l~-----~l~-~~~~ 100 (487)
T 3oja_A 33 AWNVKELDL-SGNPLSQISAADLAPFTKLELL--NLSSNVLYETLD---LESLSTLRTLDLNNNYVQ-----ELL-VGPS 100 (487)
T ss_dssp GGGCCEEEC-CSSCCCCCCGGGGTTCTTCCEE--ECTTSCCEEEEE---CTTCTTCCEEECCSSEEE-----EEE-ECTT
T ss_pred CCCccEEEe-eCCcCCCCCHHHHhCCCCCCEE--EeeCCCCCCCcc---cccCCCCCEEEecCCcCC-----CCC-CCCC
Confidence 457888888 665554332 34467788888 7777 332111 677888888888777542 122 3367
Q ss_pred cceEEEeeecCccccccCceeEEEecCCceEEEeeccccCc---eeecCCCCeeEEEEEEEeCccccCCCccchHHhhcC
Q 047191 199 LKQCTLWVETEGEMFTQAEYKVRITAPSLERLHIMSDIFGK---FVVHDLNSLTDVILDIVYGEWSRVDPNRSIQLLQQL 275 (341)
Q Consensus 199 L~~L~i~~c~~~~~~~~~~~~~~~~~p~L~~l~~~~~~~~~---~~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~l~~~ 275 (341)
|+.|.+.+|.-.. ......|+|++|.+.+..... ..+..+++|+.+++......... ...+...+
T Consensus 101 L~~L~L~~N~l~~-------~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-----~~~l~~~l 168 (487)
T 3oja_A 101 IETLHAANNNISR-------VSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN-----FAELAASS 168 (487)
T ss_dssp CCEEECCSSCCCC-------EEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEE-----GGGGGGGT
T ss_pred cCEEECcCCcCCC-------CCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcC-----hHHHhhhC
Confidence 8888777742111 111234677888777655432 23456677776655321111000 03344466
Q ss_pred CCceEEEEecchhhhccccccCCCCCCCcccEEEEEEc
Q 047191 276 NNTTSLTVSYGVLCALDHAYHKWFPALSYLQHLEVAVG 313 (341)
Q Consensus 276 ~~l~~L~l~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~ 313 (341)
++++.|.++.+.+..+ + ....+++|+.|+|+.+
T Consensus 169 ~~L~~L~Ls~N~l~~~--~---~~~~l~~L~~L~Ls~N 201 (487)
T 3oja_A 169 DTLEHLNLQYNFIYDV--K---GQVVFAKLKTLDLSSN 201 (487)
T ss_dssp TTCCEEECTTSCCCEE--E---CCCCCTTCCEEECCSS
T ss_pred CcccEEecCCCccccc--c---ccccCCCCCEEECCCC
Confidence 7777777776654322 1 1113556666666555
No 27
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=98.28 E-value=4.7e-08 Score=86.77 Aligned_cols=122 Identities=16% Similarity=0.050 Sum_probs=62.3
Q ss_pred CcceEEEEeeeeeeccCCC--cccCCchhhhhhhccC--CCcch-HHHHHhcCCccceeEEeeeecCCCCceeEEEeCCC
Q 047191 124 PSVEVLKLMSDFLLKVPAG--GTCFPNVKILTMQLES--PDNIL-TEKLFCSCPSLEELSIQAYLNDEGPTTKFVISSST 198 (341)
Q Consensus 124 ~~L~~L~L~~~~~l~~~~~--~~~~~~L~~L~~~L~~--~~~~~-l~~ll~~cp~Le~L~L~~c~~~~~~~~~l~i~~~s 198 (341)
++|++|+| .+..+...+. ...+++|+.| +|.+ ++... ....+.+++.|+.|++.++.-..+. .-....++
T Consensus 28 ~~l~~L~L-~~n~l~~i~~~~~~~l~~L~~L--~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~--~~~~~l~~ 102 (306)
T 2z66_A 28 SSATRLEL-ESNKLQSLPHGVFDKLTQLTKL--SLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMS--SNFLGLEQ 102 (306)
T ss_dssp TTCCEEEC-CSSCCCCCCTTTTTTCTTCSEE--ECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEE--EEEETCTT
T ss_pred CCCCEEEC-CCCccCccCHhHhhccccCCEE--ECCCCccCcccCcccccccccccCEEECCCCccccCh--hhcCCCCC
Confidence 46788888 6655544322 3467888888 8777 44321 1223446788888888776432111 11224466
Q ss_pred cceEEEeeecCccccccCceeEEEecCCceEEEeeccccCce---eecCCCCeeEEEE
Q 047191 199 LKQCTLWVETEGEMFTQAEYKVRITAPSLERLHIMSDIFGKF---VVHDLNSLTDVIL 253 (341)
Q Consensus 199 L~~L~i~~c~~~~~~~~~~~~~~~~~p~L~~l~~~~~~~~~~---~~~~~~~L~~~~l 253 (341)
|+.|.+..+.-... .........++|++|.+++...... .+..+++|+.+++
T Consensus 103 L~~L~l~~n~l~~~---~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 157 (306)
T 2z66_A 103 LEHLDFQHSNLKQM---SEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKM 157 (306)
T ss_dssp CCEEECTTSEEESS---TTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEEC
T ss_pred CCEEECCCCccccc---ccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEEC
Confidence 77777766311110 0000111245666666665432211 2345556665554
No 28
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=98.27 E-value=1.8e-07 Score=88.38 Aligned_cols=101 Identities=21% Similarity=0.217 Sum_probs=44.4
Q ss_pred CceEEEeeccccCce---eecCCCCeeEEEEEEEeCccccCCCccchHHhhcCCCceEEEEecchhhhccccccCCCCCC
Q 047191 226 SLERLHIMSDIFGKF---VVHDLNSLTDVILDIVYGEWSRVDPNRSIQLLQQLNNTTSLTVSYGVLCALDHAYHKWFPAL 302 (341)
Q Consensus 226 ~L~~l~~~~~~~~~~---~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~L~l~~~~~~~~~~~~~~~~~~f 302 (341)
+|++|.+.+.....+ .+..+++|+.+++.-..... .. ...+..+++++.|.++.+.+..+. ...+..+
T Consensus 225 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~----~~~~~~l~~L~~L~L~~n~l~~~~---~~~~~~l 295 (477)
T 2id5_A 225 NLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIST--IE----GSMLHELLRLQEIQLVGGQLAVVE---PYAFRGL 295 (477)
T ss_dssp CCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCE--EC----TTSCTTCTTCCEEECCSSCCSEEC---TTTBTTC
T ss_pred cccEEECcCCcccccCHHHhcCccccCeeECCCCcCCc--cC----hhhccccccCCEEECCCCccceEC---HHHhcCc
Confidence 555555555433221 23455555555543211100 00 223345556666666554433221 1122345
Q ss_pred CcccEEEEEEcC-CChhHHHHHHhcCCCCCcEEEee
Q 047191 303 SYLQHLEVAVGA-IGWAVLPVILSSSVHLQSLVLRK 337 (341)
Q Consensus 303 ~~L~~L~l~~~~-~~~~~l~~ll~~cp~L~~L~l~~ 337 (341)
++|++|+|..+. .... ...+..+|+|+.|++.+
T Consensus 296 ~~L~~L~L~~N~l~~~~--~~~~~~l~~L~~L~l~~ 329 (477)
T 2id5_A 296 NYLRVLNVSGNQLTTLE--ESVFHSVGNLETLILDS 329 (477)
T ss_dssp TTCCEEECCSSCCSCCC--GGGBSCGGGCCEEECCS
T ss_pred ccCCEEECCCCcCceeC--HhHcCCCcccCEEEccC
Confidence 566666666551 1111 12345556666666654
No 29
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.26 E-value=5.2e-07 Score=79.60 Aligned_cols=117 Identities=19% Similarity=0.188 Sum_probs=69.8
Q ss_pred ccCcceEEEEeeeeeeccCCCcccCCchhhhhhhccC--CCcchHHHHHhcCCccceeEEeeeecCCCCceeEEEeCCCc
Q 047191 122 ASPSVEVLKLMSDFLLKVPAGGTCFPNVKILTMQLES--PDNILTEKLFCSCPSLEELSIQAYLNDEGPTTKFVISSSTL 199 (341)
Q Consensus 122 ~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~~~L~~--~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~l~i~~~sL 199 (341)
.+++|+.|.+ .++.+...+....+++|+.| +|.+ +++-. . +..+++|+.|.+.++.-.... . --..++|
T Consensus 44 ~l~~L~~L~l-~~~~i~~~~~~~~l~~L~~L--~L~~n~l~~~~--~-l~~l~~L~~L~l~~n~l~~~~--~-l~~l~~L 114 (291)
T 1h6t_A 44 ELNSIDQIIA-NNSDIKSVQGIQYLPNVTKL--FLNGNKLTDIK--P-LANLKNLGWLFLDENKVKDLS--S-LKDLKKL 114 (291)
T ss_dssp HHHTCCEEEC-TTSCCCCCTTGGGCTTCCEE--ECCSSCCCCCG--G-GTTCTTCCEEECCSSCCCCGG--G-GTTCTTC
T ss_pred hcCcccEEEc-cCCCcccChhHhcCCCCCEE--EccCCccCCCc--c-cccCCCCCEEECCCCcCCCCh--h-hccCCCC
Confidence 3677889999 77777655566678999999 8888 44322 1 788999999999887543322 1 1123567
Q ss_pred ceEEEeeecCccccccCceeEEEecCCceEEEeeccccCce-eecCCCCeeEEEE
Q 047191 200 KQCTLWVETEGEMFTQAEYKVRITAPSLERLHIMSDIFGKF-VVHDLNSLTDVIL 253 (341)
Q Consensus 200 ~~L~i~~c~~~~~~~~~~~~~~~~~p~L~~l~~~~~~~~~~-~~~~~~~L~~~~l 253 (341)
+.|.+.+|.-... .. ....++|++|.+++...... .+..+++|+.+++
T Consensus 115 ~~L~L~~n~i~~~-----~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L 163 (291)
T 1h6t_A 115 KSLSLEHNGISDI-----NG-LVHLPQLESLYLGNNKITDITVLSRLTKLDTLSL 163 (291)
T ss_dssp CEEECTTSCCCCC-----GG-GGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEEC
T ss_pred CEEECCCCcCCCC-----hh-hcCCCCCCEEEccCCcCCcchhhccCCCCCEEEc
Confidence 7777776421111 00 11356777777766543322 2344445554443
No 30
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=98.25 E-value=1e-06 Score=83.06 Aligned_cols=155 Identities=19% Similarity=0.096 Sum_probs=81.6
Q ss_pred cccccccCcceEEEEeeeeeec-c-CCCcccCCchhhhhhhccC--CCcchHHHHHhcCCccceeEEeeeecCCCCceeE
Q 047191 117 QIELYASPSVEVLKLMSDFLLK-V-PAGGTCFPNVKILTMQLES--PDNILTEKLFCSCPSLEELSIQAYLNDEGPTTKF 192 (341)
Q Consensus 117 p~~~~~~~~L~~L~L~~~~~l~-~-~~~~~~~~~L~~L~~~L~~--~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~l 192 (341)
|..+..+++|++|+| .+..+. . +....++++|++| +|.+ ++.-. ...+.++++|+.|+|.++.-..... ..
T Consensus 49 ~~~~~~l~~L~~L~L-~~n~i~~~~~~~~~~l~~L~~L--~L~~n~l~~~~-~~~~~~l~~L~~L~Ls~n~i~~~~~-~~ 123 (477)
T 2id5_A 49 QDEFASFPHLEELEL-NENIVSAVEPGAFNNLFNLRTL--GLRSNRLKLIP-LGVFTGLSNLTKLDISENKIVILLD-YM 123 (477)
T ss_dssp TTTTTTCTTCCEEEC-TTSCCCEECTTTTTTCTTCCEE--ECCSSCCCSCC-TTSSTTCTTCCEEECTTSCCCEECT-TT
T ss_pred HhHccCCCCCCEEEC-CCCccCEeChhhhhCCccCCEE--ECCCCcCCccC-cccccCCCCCCEEECCCCccccCCh-hH
Confidence 344555778888888 544443 2 2234567778888 7776 33211 1235667888888887764321000 00
Q ss_pred EEeCCCcceEEEeeecCccccccCceeEEEecCCceEEEeeccccCce---eecCCCCeeEEEEEEEeCccccCCCccch
Q 047191 193 VISSSTLKQCTLWVETEGEMFTQAEYKVRITAPSLERLHIMSDIFGKF---VVHDLNSLTDVILDIVYGEWSRVDPNRSI 269 (341)
Q Consensus 193 ~i~~~sL~~L~i~~c~~~~~~~~~~~~~~~~~p~L~~l~~~~~~~~~~---~~~~~~~L~~~~l~~~~~~~~~~~~~~~~ 269 (341)
--..++|+.|.+..+.-... ... .....++|++|.+.+...... .+..+++|+.+.+.-....... .
T Consensus 124 ~~~l~~L~~L~l~~n~l~~~---~~~-~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~------~ 193 (477)
T 2id5_A 124 FQDLYNLKSLEVGDNDLVYI---SHR-AFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIR------D 193 (477)
T ss_dssp TTTCTTCCEEEECCTTCCEE---CTT-SSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEEC------T
T ss_pred ccccccCCEEECCCCcccee---Chh-hccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeC------h
Confidence 11345777887776311110 000 001357788888877654432 2566777777776532211100 2
Q ss_pred HHhhcCCCceEEEEecc
Q 047191 270 QLLQQLNNTTSLTVSYG 286 (341)
Q Consensus 270 ~~l~~~~~l~~L~l~~~ 286 (341)
..+..+++++.|.++.+
T Consensus 194 ~~~~~l~~L~~L~l~~~ 210 (477)
T 2id5_A 194 YSFKRLYRLKVLEISHW 210 (477)
T ss_dssp TCSCSCTTCCEEEEECC
T ss_pred hhcccCcccceeeCCCC
Confidence 23456677777777653
No 31
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=98.24 E-value=5e-08 Score=94.95 Aligned_cols=60 Identities=25% Similarity=0.303 Sum_probs=36.0
Q ss_pred ccccCcceEEEEeeeeeecc-CCCcccCCchhhhhhhccC--CCcchHHHHHhcCCccceeEEeeee
Q 047191 120 LYASPSVEVLKLMSDFLLKV-PAGGTCFPNVKILTMQLES--PDNILTEKLFCSCPSLEELSIQAYL 183 (341)
Q Consensus 120 ~~~~~~L~~L~L~~~~~l~~-~~~~~~~~~L~~L~~~L~~--~~~~~l~~ll~~cp~Le~L~L~~c~ 183 (341)
+..+++|+.|++ +++.+.. |....++++|++| ++.+ ++.. ....+.++|.|+.|.+.++.
T Consensus 274 ~~~l~~L~~L~l-~~n~l~~lp~~l~~l~~L~~L--~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~ 336 (606)
T 3t6q_A 274 FHCFSGLQELDL-TATHLSELPSGLVGLSTLKKL--VLSANKFENL-CQISASNFPSLTHLSIKGNT 336 (606)
T ss_dssp TTTCTTCSEEEC-TTSCCSCCCSSCCSCTTCCEE--ECTTCCCSBG-GGGCGGGCTTCSEEECCSCS
T ss_pred hccccCCCEEec-cCCccCCCChhhcccccCCEE--ECccCCcCcC-chhhhhccCcCCEEECCCCC
Confidence 445677888888 6555543 3234556777777 7776 3322 12235567777777777663
No 32
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=98.23 E-value=3e-07 Score=83.31 Aligned_cols=198 Identities=19% Similarity=0.135 Sum_probs=113.1
Q ss_pred CcceEEEEeeeeeecc-CC-CcccCCchhhhhhhccC--CCcchHHHHHhcCCccceeEEeeeecCCCCceeE-EEeCCC
Q 047191 124 PSVEVLKLMSDFLLKV-PA-GGTCFPNVKILTMQLES--PDNILTEKLFCSCPSLEELSIQAYLNDEGPTTKF-VISSST 198 (341)
Q Consensus 124 ~~L~~L~L~~~~~l~~-~~-~~~~~~~L~~L~~~L~~--~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~l-~i~~~s 198 (341)
++|++|++ ++..+.. ++ ...++++|++| +|.+ +++-. ...+.++++|+.|++.++.-.... .- .-..++
T Consensus 52 ~~L~~L~l-~~n~i~~~~~~~~~~l~~L~~L--~L~~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~--~~~~~~l~~ 125 (353)
T 2z80_A 52 EAVKSLDL-SNNRITYISNSDLQRCVNLQAL--VLTSNGINTIE-EDSFSSLGSLEHLDLSYNYLSNLS--SSWFKPLSS 125 (353)
T ss_dssp TTCCEEEC-TTSCCCEECTTTTTTCTTCCEE--ECTTSCCCEEC-TTTTTTCTTCCEEECCSSCCSSCC--HHHHTTCTT
T ss_pred ccCcEEEC-CCCcCcccCHHHhccCCCCCEE--ECCCCccCccC-HhhcCCCCCCCEEECCCCcCCcCC--HhHhCCCcc
Confidence 47999999 7655543 32 35578999999 9987 44322 223677899999999887543322 11 113468
Q ss_pred cceEEEeeecCccccccCceeEEEecCCceEEEeeccc-cCce---eecCCCCeeEEEEEEEeCccccCCCccchHHhhc
Q 047191 199 LKQCTLWVETEGEMFTQAEYKVRITAPSLERLHIMSDI-FGKF---VVHDLNSLTDVILDIVYGEWSRVDPNRSIQLLQQ 274 (341)
Q Consensus 199 L~~L~i~~c~~~~~~~~~~~~~~~~~p~L~~l~~~~~~-~~~~---~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~l~~ 274 (341)
|+.|++.++.-... ......-..++|++|.+.+.. .... .+..+++|+++++....... .. ...+..
T Consensus 126 L~~L~L~~n~l~~l---~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~--~~----~~~l~~ 196 (353)
T 2z80_A 126 LTFLNLLGNPYKTL---GETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQS--YE----PKSLKS 196 (353)
T ss_dssp CSEEECTTCCCSSS---CSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE--EC----TTTTTT
T ss_pred CCEEECCCCCCccc---CchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCc--cC----HHHHhc
Confidence 88888887421111 000112246788998888762 2222 35567777777665322111 00 334566
Q ss_pred CCCceEEEEecchhhhccccccCCCCCCCcccEEEEEEcCC---ChhHHHHHHhcCCCCCcEEEeeeee
Q 047191 275 LNNTTSLTVSYGVLCALDHAYHKWFPALSYLQHLEVAVGAI---GWAVLPVILSSSVHLQSLVLRKVII 340 (341)
Q Consensus 275 ~~~l~~L~l~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~---~~~~l~~ll~~cp~L~~L~l~~~~~ 340 (341)
+++++.|.++.+.+..+..... ..+++|++|++..+.. .... ....+.++.++.+.+.+..|
T Consensus 197 l~~L~~L~l~~n~l~~~~~~~~---~~~~~L~~L~L~~n~l~~~~~~~-l~~~~~~~~l~~l~L~~~~l 261 (353)
T 2z80_A 197 IQNVSHLILHMKQHILLLEIFV---DVTSSVECLELRDTDLDTFHFSE-LSTGETNSLIKKFTFRNVKI 261 (353)
T ss_dssp CSEEEEEEEECSCSTTHHHHHH---HHTTTEEEEEEESCBCTTCCCC-------CCCCCCEEEEESCBC
T ss_pred cccCCeecCCCCccccchhhhh---hhcccccEEECCCCccccccccc-cccccccchhhccccccccc
Confidence 7888888888765533211101 1356788888887711 1111 22345677788887776654
No 33
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=98.22 E-value=2.3e-07 Score=86.84 Aligned_cols=185 Identities=16% Similarity=0.151 Sum_probs=90.6
Q ss_pred cccccCcceEEEEeeeeeeccCC--CcccCCchhhhhhhccC--CCcchHHHHHhcCCccceeEEeeeecCCCCceeEE-
Q 047191 119 ELYASPSVEVLKLMSDFLLKVPA--GGTCFPNVKILTMQLES--PDNILTEKLFCSCPSLEELSIQAYLNDEGPTTKFV- 193 (341)
Q Consensus 119 ~~~~~~~L~~L~L~~~~~l~~~~--~~~~~~~L~~L~~~L~~--~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~l~- 193 (341)
.+..+++|+.|+| ++..+...+ ....+++|+.| +|.+ ++.- -...+.++++|+.|++.++.... .+.
T Consensus 107 ~~~~l~~L~~L~L-~~n~l~~~~~~~~~~l~~L~~L--~L~~N~i~~~-~~~~~~~l~~L~~L~l~~~~~l~----~i~~ 178 (440)
T 3zyj_A 107 AFNGLANLNTLEL-FDNRLTTIPNGAFVYLSKLKEL--WLRNNPIESI-PSYAFNRIPSLRRLDLGELKRLS----YISE 178 (440)
T ss_dssp GGTTCSSCCEEEC-CSSCCSSCCTTTSCSCSSCCEE--ECCSCCCCEE-CTTTTTTCTTCCEEECCCCTTCC----EECT
T ss_pred hccCCccCCEEEC-CCCcCCeeCHhHhhccccCcee--eCCCCccccc-CHHHhhhCcccCEeCCCCCCCcc----eeCc
Confidence 3444666666666 544443322 23455666666 6665 3221 11224556677777766653321 111
Q ss_pred ---EeCCCcceEEEeeecCccccccCceeEEEecCCceEEEeeccccCce---eecCCCCeeEEEEEEEeCccccCCCcc
Q 047191 194 ---ISSSTLKQCTLWVETEGEMFTQAEYKVRITAPSLERLHIMSDIFGKF---VVHDLNSLTDVILDIVYGEWSRVDPNR 267 (341)
Q Consensus 194 ---i~~~sL~~L~i~~c~~~~~~~~~~~~~~~~~p~L~~l~~~~~~~~~~---~~~~~~~L~~~~l~~~~~~~~~~~~~~ 267 (341)
-..++|+.|.+.+|.-... .. ....++|++|.+++...... .+..+++|+.+++.-..... ..
T Consensus 179 ~~~~~l~~L~~L~L~~n~l~~~-----~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~--- 247 (440)
T 3zyj_A 179 GAFEGLSNLRYLNLAMCNLREI-----PN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQV--IE--- 247 (440)
T ss_dssp TTTTTCSSCCEEECTTSCCSSC-----CC-CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCE--EC---
T ss_pred chhhcccccCeecCCCCcCccc-----cc-cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeE--EC---
Confidence 0234666666666311111 10 12345677777766544322 24556666665543211110 00
Q ss_pred chHHhhcCCCceEEEEecchhhhccccccCCCCCCCcccEEEEEEc----CCChhHHHHHHhc
Q 047191 268 SIQLLQQLNNTTSLTVSYGVLCALDHAYHKWFPALSYLQHLEVAVG----AIGWAVLPVILSS 326 (341)
Q Consensus 268 ~~~~l~~~~~l~~L~l~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~----~~~~~~l~~ll~~ 326 (341)
...+..+++++.|.|+.+.+..+. ...+..+++|+.|+|..+ +....++...++.
T Consensus 248 -~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~l~~L~~L~L~~Np~~CdC~l~~l~~~~~~ 306 (440)
T 3zyj_A 248 -RNAFDNLQSLVEINLAHNNLTLLP---HDLFTPLHHLERIHLHHNPWNCNCDILWLSWWIKD 306 (440)
T ss_dssp -TTSSTTCTTCCEEECTTSCCCCCC---TTTTSSCTTCCEEECCSSCEECSSTTHHHHHHHHT
T ss_pred -hhhhcCCCCCCEEECCCCCCCccC---hhHhccccCCCEEEcCCCCccCCCCchHHHHHHHh
Confidence 334456677777777766544221 112335667777777765 2334555555544
No 34
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=98.21 E-value=9.1e-08 Score=89.68 Aligned_cols=64 Identities=23% Similarity=0.314 Sum_probs=36.3
Q ss_pred HHhhcCCCceEEEEecchhhhccccccCCCCCCCcccEEEEEEcCCChhHHHHHHhcCCCCCcEEEee
Q 047191 270 QLLQQLNNTTSLTVSYGVLCALDHAYHKWFPALSYLQHLEVAVGAIGWAVLPVILSSSVHLQSLVLRK 337 (341)
Q Consensus 270 ~~l~~~~~l~~L~l~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~~~~~l~~ll~~cp~L~~L~l~~ 337 (341)
..+..+++++.|.++.+.+..+ ....+..+++|++|++..+.... .....+..+|+|+.|++.+
T Consensus 341 ~~~~~l~~L~~L~Ls~N~l~~~---~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~l~~ 404 (455)
T 3v47_A 341 RMFENLDKLEVLDLSYNHIRAL---GDQSFLGLPNLKELALDTNQLKS-VPDGIFDRLTSLQKIWLHT 404 (455)
T ss_dssp GGGTTCTTCCEEECCSSCCCEE---CTTTTTTCTTCCEEECCSSCCSC-CCTTTTTTCTTCCEEECCS
T ss_pred hHhcCcccCCEEECCCCccccc---ChhhccccccccEEECCCCcccc-CCHhHhccCCcccEEEccC
Confidence 4455667777777766654322 11223356778888887762111 0112456778888888765
No 35
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.19 E-value=5.8e-07 Score=87.44 Aligned_cols=117 Identities=19% Similarity=0.186 Sum_probs=68.6
Q ss_pred ccCcceEEEEeeeeeeccCCCcccCCchhhhhhhccC--CCcchHHHHHhcCCccceeEEeeeecCCCCceeEEEeCCCc
Q 047191 122 ASPSVEVLKLMSDFLLKVPAGGTCFPNVKILTMQLES--PDNILTEKLFCSCPSLEELSIQAYLNDEGPTTKFVISSSTL 199 (341)
Q Consensus 122 ~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~~~L~~--~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~l~i~~~sL 199 (341)
..+.|+.|.+ .++.+...+....+++|+.| +|.+ +++-.- +..++.|+.|.|.++.-.... .+ -..++|
T Consensus 41 ~L~~L~~L~l-~~n~i~~l~~l~~l~~L~~L--~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~l~~l~--~l-~~l~~L 111 (605)
T 1m9s_A 41 ELNSIDQIIA-NNSDIKSVQGIQYLPNVTKL--FLNGNKLTDIKP---LTNLKNLGWLFLDENKIKDLS--SL-KDLKKL 111 (605)
T ss_dssp HHTTCCCCBC-TTCCCCCCTTGGGCTTCCEE--ECTTSCCCCCGG---GGGCTTCCEEECCSSCCCCCT--TS-TTCTTC
T ss_pred cCCCCCEEEC-cCCCCCCChHHccCCCCCEE--EeeCCCCCCChh---hccCCCCCEEECcCCCCCCCh--hh-ccCCCC
Confidence 3567888888 76666655566678888888 8877 433221 778888999988887543322 11 134567
Q ss_pred ceEEEeeecCccccccCceeEEEecCCceEEEeeccccCce-eecCCCCeeEEEE
Q 047191 200 KQCTLWVETEGEMFTQAEYKVRITAPSLERLHIMSDIFGKF-VVHDLNSLTDVIL 253 (341)
Q Consensus 200 ~~L~i~~c~~~~~~~~~~~~~~~~~p~L~~l~~~~~~~~~~-~~~~~~~L~~~~l 253 (341)
+.|.+..|.-... .. ...+|+|+.|.+++.....+ .+..+++|+.+++
T Consensus 112 ~~L~Ls~N~l~~l-----~~-l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~L 160 (605)
T 1m9s_A 112 KSLSLEHNGISDI-----NG-LVHLPQLESLYLGNNKITDITVLSRLTKLDTLSL 160 (605)
T ss_dssp CEEECTTSCCCCC-----GG-GGGCTTCSEEECCSSCCCCCGGGGSCTTCSEEEC
T ss_pred CEEEecCCCCCCC-----cc-ccCCCccCEEECCCCccCCchhhcccCCCCEEEC
Confidence 7777776421111 00 11356777777766543322 2344555555444
No 36
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=98.18 E-value=4.6e-07 Score=79.05 Aligned_cols=172 Identities=17% Similarity=0.138 Sum_probs=108.1
Q ss_pred ccCcceEEEEeeeeeeccCCCcccCCchhhhhhhccC--CCcchHHHHHhcCCccceeEEeeeecCCCCceeEEEeCCCc
Q 047191 122 ASPSVEVLKLMSDFLLKVPAGGTCFPNVKILTMQLES--PDNILTEKLFCSCPSLEELSIQAYLNDEGPTTKFVISSSTL 199 (341)
Q Consensus 122 ~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~~~L~~--~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~l~i~~~sL 199 (341)
..++|+.|.+ .++.+...+....+++|+.| +|.+ +++- . .+..++.|+.|.+.++.-.+... ..--..++|
T Consensus 39 ~l~~L~~L~l-~~~~i~~~~~l~~l~~L~~L--~l~~n~l~~~--~-~l~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L 111 (272)
T 3rfs_A 39 ELNSIDQIIA-NNSDIKSVQGIQYLPNVRYL--ALGGNKLHDI--S-ALKELTNLTYLILTGNQLQSLPN-GVFDKLTNL 111 (272)
T ss_dssp HHTTCCEEEC-TTSCCCCCTTGGGCTTCCEE--ECTTSCCCCC--G-GGTTCTTCCEEECTTSCCCCCCT-TTTTTCTTC
T ss_pred cccceeeeee-CCCCcccccccccCCCCcEE--ECCCCCCCCc--h-hhcCCCCCCEEECCCCccCccCh-hHhcCCcCC
Confidence 3678999999 77777666566778999999 9988 4442 2 46789999999999885432220 001134688
Q ss_pred ceEEEeeecCccccccCceeEEEecCCceEEEeeccccCcee---ecCCCCeeEEEEEEEeCccccCCCccchHHhhcCC
Q 047191 200 KQCTLWVETEGEMFTQAEYKVRITAPSLERLHIMSDIFGKFV---VHDLNSLTDVILDIVYGEWSRVDPNRSIQLLQQLN 276 (341)
Q Consensus 200 ~~L~i~~c~~~~~~~~~~~~~~~~~p~L~~l~~~~~~~~~~~---~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~l~~~~ 276 (341)
+.|.+..|.-... .....-..++|++|.+.+....... +..+++|+.+++....... .. ...+..++
T Consensus 112 ~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~----~~~~~~l~ 181 (272)
T 3rfs_A 112 KELVLVENQLQSL----PDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQS--LP----EGVFDKLT 181 (272)
T ss_dssp CEEECTTSCCCCC----CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC--CC----TTTTTTCT
T ss_pred CEEECCCCcCCcc----CHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCc--cC----HHHhcCCc
Confidence 9998888421111 0000113578999999877544332 4667788877764321111 00 44456778
Q ss_pred CceEEEEecchhhhccccccCCCCCCCcccEEEEEEc
Q 047191 277 NTTSLTVSYGVLCALDHAYHKWFPALSYLQHLEVAVG 313 (341)
Q Consensus 277 ~l~~L~l~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~ 313 (341)
+++.|.++.+.+..+. ...+..+++|+.|++..+
T Consensus 182 ~L~~L~L~~N~l~~~~---~~~~~~l~~L~~L~l~~N 215 (272)
T 3rfs_A 182 QLKDLRLYQNQLKSVP---DGVFDRLTSLQYIWLHDN 215 (272)
T ss_dssp TCCEEECCSSCCSCCC---TTTTTTCTTCCEEECCSS
T ss_pred cCCEEECCCCcCCccC---HHHHhCCcCCCEEEccCC
Confidence 8888888877654321 122346778888888776
No 37
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=98.18 E-value=1.8e-07 Score=91.03 Aligned_cols=209 Identities=15% Similarity=0.072 Sum_probs=108.3
Q ss_pred cccccccCcceEEEEeeeeeecc-CC-CcccCCchhhhhhhccC--CCcchHHHHHhcCCccceeEEeeeecCCCCc-ee
Q 047191 117 QIELYASPSVEVLKLMSDFLLKV-PA-GGTCFPNVKILTMQLES--PDNILTEKLFCSCPSLEELSIQAYLNDEGPT-TK 191 (341)
Q Consensus 117 p~~~~~~~~L~~L~L~~~~~l~~-~~-~~~~~~~L~~L~~~L~~--~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~-~~ 191 (341)
|..+..+++|++|++ .++.+.. ++ ....+++|+.| .+.+ +....-...+..+++|+.|++.++.-.+... +.
T Consensus 294 p~~l~~l~~L~~L~l-~~n~l~~~~~~~~~~l~~L~~L--~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 370 (606)
T 3t6q_A 294 PSGLVGLSTLKKLVL-SANKFENLCQISASNFPSLTHL--SIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNL 370 (606)
T ss_dssp CSSCCSCTTCCEEEC-TTCCCSBGGGGCGGGCTTCSEE--ECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTT
T ss_pred ChhhcccccCCEEEC-ccCCcCcCchhhhhccCcCCEE--ECCCCCcccccchhhhhccCcCCEEECCCCccccccCcch
Confidence 555666777777777 6554432 11 34456777777 7766 3322222235567777777777664321000 00
Q ss_pred EEEeCCCcceEEEeeecCccccccCceeEEEecCCceEEEeeccccCc----eeecCCCCeeEEEEEEEeCccccCCCcc
Q 047191 192 FVISSSTLKQCTLWVETEGEMFTQAEYKVRITAPSLERLHIMSDIFGK----FVVHDLNSLTDVILDIVYGEWSRVDPNR 267 (341)
Q Consensus 192 l~i~~~sL~~L~i~~c~~~~~~~~~~~~~~~~~p~L~~l~~~~~~~~~----~~~~~~~~L~~~~l~~~~~~~~~~~~~~ 267 (341)
.--..++|+.|.+..|.-... ........++|++|.+.+..... ..+..+++|+.+++.........
T Consensus 371 ~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~----- 441 (606)
T 3t6q_A 371 QLRNLSHLQSLNLSYNEPLSL----KTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISS----- 441 (606)
T ss_dssp TTTTCTTCCEEECCSCSCEEE----CTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTC-----
T ss_pred hcccCCCCCEEECCCCcCCcC----CHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcC-----
Confidence 001235677777766311000 00000125677777776554321 12456667776665322111100
Q ss_pred chHHhhcCCCceEEEEecchhhhccccccCCCCCCCcccEEEEEEcCCChhHHHHHHhcCCCCCcEEEeeee
Q 047191 268 SIQLLQQLNNTTSLTVSYGVLCALDHAYHKWFPALSYLQHLEVAVGAIGWAVLPVILSSSVHLQSLVLRKVI 339 (341)
Q Consensus 268 ~~~~l~~~~~l~~L~l~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~~~~~l~~ll~~cp~L~~L~l~~~~ 339 (341)
...+..+++++.|.++.+.+..........+..+++|++|++..+.... .....+..+|+|+.|++.+-.
T Consensus 442 -~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~N~ 511 (606)
T 3t6q_A 442 -EQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSS-IDQHAFTSLKMMNHVDLSHNR 511 (606)
T ss_dssp -TTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECCSSC
T ss_pred -HHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCc-cChhhhccccCCCEEECCCCc
Confidence 3445667888888887766543211222223467788888887762111 112335678888888887643
No 38
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.16 E-value=2.3e-08 Score=91.90 Aligned_cols=216 Identities=13% Similarity=0.066 Sum_probs=128.4
Q ss_pred cccccCcceEEEEeeeeeeccCC------CcccCCchhhhhhhccC--CC------cchH---HHHHhcCCccceeEEee
Q 047191 119 ELYASPSVEVLKLMSDFLLKVPA------GGTCFPNVKILTMQLES--PD------NILT---EKLFCSCPSLEELSIQA 181 (341)
Q Consensus 119 ~~~~~~~L~~L~L~~~~~l~~~~------~~~~~~~L~~L~~~L~~--~~------~~~l---~~ll~~cp~Le~L~L~~ 181 (341)
.+..+++|++|+| +++.+.... ....+++|++| +|.+ ++ +..+ ...+..++.|+.|+|.+
T Consensus 27 ~l~~~~~L~~L~L-~~n~i~~~~~~~l~~~l~~~~~L~~L--~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~ 103 (386)
T 2ca6_A 27 VLLEDDSVKEIVL-SGNTIGTEAARWLSENIASKKDLEIA--EFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD 103 (386)
T ss_dssp HHHHCSCCCEEEC-TTSEECHHHHHHHHHTTTTCTTCCEE--ECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred HHhcCCCccEEEC-CCCCCCHHHHHHHHHHHHhCCCccEE--eCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence 3455788999999 777664321 23468999999 9987 22 1233 33467899999999999
Q ss_pred eecCCCCc---eeEEEeCCCcceEEEeeecCccccccCceeEEEec---------CCceEEEeeccccCce-------ee
Q 047191 182 YLNDEGPT---TKFVISSSTLKQCTLWVETEGEMFTQAEYKVRITA---------PSLERLHIMSDIFGKF-------VV 242 (341)
Q Consensus 182 c~~~~~~~---~~l~i~~~sL~~L~i~~c~~~~~~~~~~~~~~~~~---------p~L~~l~~~~~~~~~~-------~~ 242 (341)
+.-..... +..--..++|+.|.+.+|.-............... |+|++|.+.+...... .+
T Consensus 104 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l 183 (386)
T 2ca6_A 104 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF 183 (386)
T ss_dssp CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHH
Confidence 86432110 00112468999999998521100000000000011 8999999987765311 24
Q ss_pred cCCCCeeEEEEEEEeCccccCCCccc-hH-HhhcCCCceEEEEecchhhhcccc-ccCCCCCCCcccEEEEEEcCCChh-
Q 047191 243 HDLNSLTDVILDIVYGEWSRVDPNRS-IQ-LLQQLNNTTSLTVSYGVLCALDHA-YHKWFPALSYLQHLEVAVGAIGWA- 318 (341)
Q Consensus 243 ~~~~~L~~~~l~~~~~~~~~~~~~~~-~~-~l~~~~~l~~L~l~~~~~~~~~~~-~~~~~~~f~~L~~L~l~~~~~~~~- 318 (341)
..+++|+.+.+.-....... ... .. .+..+++++.|.++.+.+...... -...+..+++|++|+|..+..+..
T Consensus 184 ~~~~~L~~L~L~~n~l~~~g---~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~ 260 (386)
T 2ca6_A 184 QSHRLLHTVKMVQNGIRPEG---IEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARG 260 (386)
T ss_dssp HHCTTCCEEECCSSCCCHHH---HHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHH
T ss_pred HhCCCcCEEECcCCCCCHhH---HHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhh
Confidence 56788888776532111000 000 22 566889999999998776311000 011234677899999988744433
Q ss_pred --HHHHHHhc--CCCCCcEEEeeeee
Q 047191 319 --VLPVILSS--SVHLQSLVLRKVII 340 (341)
Q Consensus 319 --~l~~ll~~--cp~L~~L~l~~~~~ 340 (341)
.+...++. +|+|+.|.+.+-.|
T Consensus 261 ~~~l~~~l~~~~~~~L~~L~L~~n~i 286 (386)
T 2ca6_A 261 AAAVVDAFSKLENIGLQTLRLQYNEI 286 (386)
T ss_dssp HHHHHHHHHTCSSCCCCEEECCSSCC
T ss_pred HHHHHHHHhhccCCCeEEEECcCCcC
Confidence 34555654 89999999876443
No 39
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=98.13 E-value=6.3e-07 Score=77.51 Aligned_cols=35 Identities=23% Similarity=0.380 Sum_probs=32.4
Q ss_pred ccCCCChHHHHHHHcCCChhhhhhhhccccchHHh
Q 047191 6 RINALPDSVLCHILSYLPTKNVVATSILARRWKLV 40 (341)
Q Consensus 6 ~is~LPd~iL~~Ils~Lp~~~~~~~s~vskrWr~l 40 (341)
-|+.||+||+++|||||+++|+++++.|||+||.+
T Consensus 4 ~l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~l 38 (312)
T 3l2o_B 4 TLTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNET 38 (312)
T ss_dssp HHHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHHH
T ss_pred hhHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 36789999999999999999999999999999944
No 40
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A
Probab=98.12 E-value=1.2e-06 Score=76.47 Aligned_cols=36 Identities=31% Similarity=0.623 Sum_probs=33.8
Q ss_pred CccCCCChHHHHHHHcCCChhhhh-hhhccccchHHh
Q 047191 5 YRINALPDSVLCHILSYLPTKNVV-ATSILARRWKLV 40 (341)
Q Consensus 5 d~is~LPd~iL~~Ils~Lp~~~~~-~~s~vskrWr~l 40 (341)
..+..||||+|.+||++||.++++ +++.|||+|+.+
T Consensus 49 ~~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l 85 (297)
T 2e31_A 49 EYLAELPEPLLLRVLAELPATELVQACRLVCLRWKEL 85 (297)
T ss_dssp CCTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHH
T ss_pred cChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHH
Confidence 367899999999999999999999 999999999976
No 41
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=98.12 E-value=6.2e-07 Score=87.20 Aligned_cols=205 Identities=12% Similarity=0.011 Sum_probs=91.7
Q ss_pred ccccCcceEEEEeeeeeeccCCCcccCCchhhhhhhccC--CCcchHHHHHhcCCccceeEEeeeecCCCCceeEEEeCC
Q 047191 120 LYASPSVEVLKLMSDFLLKVPAGGTCFPNVKILTMQLES--PDNILTEKLFCSCPSLEELSIQAYLNDEGPTTKFVISSS 197 (341)
Q Consensus 120 ~~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~~~L~~--~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~l~i~~~ 197 (341)
+..+++|+.|++ .+..+...+....+++|++| .+.+ + ..+..+ .+|.|+.|.+.++...... . ....+
T Consensus 281 ~~~l~~L~~L~l-~~~~~~~l~~l~~~~~L~~L--~l~~n~l--~~lp~~--~l~~L~~L~l~~n~~~~~~--~-~~~l~ 350 (606)
T 3vq2_A 281 FHCLANVSAMSL-AGVSIKYLEDVPKHFKWQSL--SIIRCQL--KQFPTL--DLPFLKSLTLTMNKGSISF--K-KVALP 350 (606)
T ss_dssp CGGGTTCSEEEE-ESCCCCCCCCCCTTCCCSEE--EEESCCC--SSCCCC--CCSSCCEEEEESCSSCEEC--C-CCCCT
T ss_pred cccCCCCCEEEe-cCccchhhhhccccccCCEE--EcccccC--cccccC--CCCccceeeccCCcCccch--h-hccCC
Confidence 334567777777 65555444344456677777 6666 3 222222 6677777777666322100 0 11334
Q ss_pred CcceEEEeeecCccccccCceeEEEecCCceEEEeeccccCc--eeecCCCCeeEEEEEEEeCcc----ccCCC------
Q 047191 198 TLKQCTLWVETEGEMFTQAEYKVRITAPSLERLHIMSDIFGK--FVVHDLNSLTDVILDIVYGEW----SRVDP------ 265 (341)
Q Consensus 198 sL~~L~i~~c~~~~~~~~~~~~~~~~~p~L~~l~~~~~~~~~--~~~~~~~~L~~~~l~~~~~~~----~~~~~------ 265 (341)
+|+.|.+.+|.-... ..........++|++|.+.+..... ..+..+++|+.+.+.-..... ..+..
T Consensus 351 ~L~~L~ls~n~l~~~--~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~ 428 (606)
T 3vq2_A 351 SLSYLDLSRNALSFS--GCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLY 428 (606)
T ss_dssp TCCEEECCSSCEEEE--EECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCE
T ss_pred CCCEEECcCCccCCC--cchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCE
Confidence 556665555210000 0000000123455555554433211 123344444444432110000 00000
Q ss_pred -------c-cc-hHHhhcCCCceEEEEecchhhhccccccCCCCCCCcccEEEEEEcCCChhHHHHHHhcCCCCCcEEEe
Q 047191 266 -------N-RS-IQLLQQLNNTTSLTVSYGVLCALDHAYHKWFPALSYLQHLEVAVGAIGWAVLPVILSSSVHLQSLVLR 336 (341)
Q Consensus 266 -------~-~~-~~~l~~~~~l~~L~l~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~~~~~l~~ll~~cp~L~~L~l~ 336 (341)
. .. ...+..+++++.|.++.+.+... .....+..+++|++|++..+.... .....+..+++|+.|.+.
T Consensus 429 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls 505 (606)
T 3vq2_A 429 LDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDN--TLSNVFANTTNLTFLDLSKCQLEQ-ISWGVFDTLHRLQLLNMS 505 (606)
T ss_dssp EECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGG--EECSCCTTCTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECC
T ss_pred EECcCCCCCccchhhhcCCCCCCEEECCCCcCCCc--chHHhhccCCCCCEEECCCCcCCc-cChhhhcccccCCEEECC
Confidence 0 00 23345566666766666543320 011123356778888887762111 112335678888888877
Q ss_pred eee
Q 047191 337 KVI 339 (341)
Q Consensus 337 ~~~ 339 (341)
+-.
T Consensus 506 ~N~ 508 (606)
T 3vq2_A 506 HNN 508 (606)
T ss_dssp SSC
T ss_pred CCc
Confidence 643
No 42
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=98.12 E-value=3.7e-07 Score=85.35 Aligned_cols=202 Identities=15% Similarity=0.084 Sum_probs=109.2
Q ss_pred ccccccCcceEEEEeeeeeeccCC--CcccCCchhhhhhhccC--CCcchHHHHHhcCCccceeEEeeeecCCCCceeEE
Q 047191 118 IELYASPSVEVLKLMSDFLLKVPA--GGTCFPNVKILTMQLES--PDNILTEKLFCSCPSLEELSIQAYLNDEGPTTKFV 193 (341)
Q Consensus 118 ~~~~~~~~L~~L~L~~~~~l~~~~--~~~~~~~L~~L~~~L~~--~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~l~ 193 (341)
..+..+++|+.|+| ++..+...+ ...++++|++| +|.+ ++.-. ...+.++++|+.|+|.++.-..+.. ...
T Consensus 82 ~~~~~l~~L~~L~L-s~n~i~~i~~~~~~~l~~L~~L--~L~~n~l~~~~-~~~~~~l~~L~~L~L~~N~i~~~~~-~~~ 156 (440)
T 3zyj_A 82 NSFKHLRHLEILQL-SRNHIRTIEIGAFNGLANLNTL--ELFDNRLTTIP-NGAFVYLSKLKELWLRNNPIESIPS-YAF 156 (440)
T ss_dssp TTTSSCSSCCEEEC-CSSCCCEECGGGGTTCSSCCEE--ECCSSCCSSCC-TTTSCSCSSCCEEECCSCCCCEECT-TTT
T ss_pred HHhhCCCCCCEEEC-CCCcCCccChhhccCCccCCEE--ECCCCcCCeeC-HhHhhccccCceeeCCCCcccccCH-HHh
Confidence 34455677777777 554443221 23456777777 7766 33211 1235567777777777664311000 000
Q ss_pred EeCCCcceEEEeeecCccccccCceeEEEecCCceEEEeeccccCc-eeecCCCCeeEEEEEEEeCccccCCCccchHHh
Q 047191 194 ISSSTLKQCTLWVETEGEMFTQAEYKVRITAPSLERLHIMSDIFGK-FVVHDLNSLTDVILDIVYGEWSRVDPNRSIQLL 272 (341)
Q Consensus 194 i~~~sL~~L~i~~c~~~~~~~~~~~~~~~~~p~L~~l~~~~~~~~~-~~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~l 272 (341)
-..++|+.|.+..|....... ....-..++|++|.+.+..... ..+..+++|+.+++.-..... .. ...+
T Consensus 157 ~~l~~L~~L~l~~~~~l~~i~---~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~--~~----~~~~ 227 (440)
T 3zyj_A 157 NRIPSLRRLDLGELKRLSYIS---EGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSA--IR----PGSF 227 (440)
T ss_dssp TTCTTCCEEECCCCTTCCEEC---TTTTTTCSSCCEEECTTSCCSSCCCCTTCSSCCEEECTTSCCCE--EC----TTTT
T ss_pred hhCcccCEeCCCCCCCcceeC---cchhhcccccCeecCCCCcCccccccCCCcccCEEECCCCccCc--cC----hhhh
Confidence 123567777777642211100 0000125678888887665443 235566677776653211110 00 3456
Q ss_pred hcCCCceEEEEecchhhhccccccCCCCCCCcccEEEEEEcCCChhHHHHHHhcCCCCCcEEEee
Q 047191 273 QQLNNTTSLTVSYGVLCALDHAYHKWFPALSYLQHLEVAVGAIGWAVLPVILSSSVHLQSLVLRK 337 (341)
Q Consensus 273 ~~~~~l~~L~l~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~~~~~l~~ll~~cp~L~~L~l~~ 337 (341)
.++++++.|.++.+.+..+. ...+..+++|++|+|..+... ......+..+++|+.|.+.+
T Consensus 228 ~~l~~L~~L~L~~n~l~~~~---~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~ 288 (440)
T 3zyj_A 228 QGLMHLQKLWMIQSQIQVIE---RNAFDNLQSLVEINLAHNNLT-LLPHDLFTPLHHLERIHLHH 288 (440)
T ss_dssp TTCTTCCEEECTTCCCCEEC---TTSSTTCTTCCEEECTTSCCC-CCCTTTTSSCTTCCEEECCS
T ss_pred ccCccCCEEECCCCceeEEC---hhhhcCCCCCCEEECCCCCCC-ccChhHhccccCCCEEEcCC
Confidence 67888899988877654331 123446778999999887211 11123467789999998865
No 43
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=98.11 E-value=1.9e-06 Score=79.12 Aligned_cols=99 Identities=17% Similarity=0.149 Sum_probs=60.5
Q ss_pred ecCCceEEEeeccccCce---eecCCCCeeEEEEEEEeCccccCCCccchHHhhcCCCceEEEEecchhhhccccccCCC
Q 047191 223 TAPSLERLHIMSDIFGKF---VVHDLNSLTDVILDIVYGEWSRVDPNRSIQLLQQLNNTTSLTVSYGVLCALDHAYHKWF 299 (341)
Q Consensus 223 ~~p~L~~l~~~~~~~~~~---~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~L~l~~~~~~~~~~~~~~~~ 299 (341)
..|+|++|.+++...... .+..+++|+.+++.-..... . ......+++++.|.++.+.+..+. ..+
T Consensus 246 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-----~--~~~~~~l~~L~~L~L~~n~l~~~~----~~~ 314 (390)
T 3o6n_A 246 NYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-----L--NLYGQPIPTLKVLDLSHNHLLHVE----RNQ 314 (390)
T ss_dssp GCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-----E--ECSSSCCTTCCEEECCSSCCCCCG----GGH
T ss_pred CCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-----c--CcccCCCCCCCEEECCCCcceecC----ccc
Confidence 357888888887655433 35667888877764321111 0 122346788888888877554221 112
Q ss_pred CCCCcccEEEEEEcCC-ChhHHHHHHhcCCCCCcEEEee
Q 047191 300 PALSYLQHLEVAVGAI-GWAVLPVILSSSVHLQSLVLRK 337 (341)
Q Consensus 300 ~~f~~L~~L~l~~~~~-~~~~l~~ll~~cp~L~~L~l~~ 337 (341)
..+++|++|++..+.. ... +..+|+|+.|++.+
T Consensus 315 ~~l~~L~~L~L~~N~i~~~~-----~~~~~~L~~L~l~~ 348 (390)
T 3o6n_A 315 PQFDRLENLYLDHNSIVTLK-----LSTHHTLKNLTLSH 348 (390)
T ss_dssp HHHTTCSEEECCSSCCCCCC-----CCTTCCCSEEECCS
T ss_pred cccCcCCEEECCCCccceeC-----chhhccCCEEEcCC
Confidence 3567888888887722 221 66778888888765
No 44
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.11 E-value=1.6e-06 Score=77.09 Aligned_cols=166 Identities=15% Similarity=0.072 Sum_probs=97.3
Q ss_pred ccccCcceEEEEeeeeeeccCCCcccCCchhhhhhhccC--CCcchHHHHHhcCCccceeEEeeeecCCCCceeEEEeCC
Q 047191 120 LYASPSVEVLKLMSDFLLKVPAGGTCFPNVKILTMQLES--PDNILTEKLFCSCPSLEELSIQAYLNDEGPTTKFVISSS 197 (341)
Q Consensus 120 ~~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~~~L~~--~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~l~i~~~ 197 (341)
+..+++|+.|+| +++.+...+...++++|+.| +|.+ +++-. -+..++.|+.|.+.++.-.+.. . --..+
T Consensus 59 ~~~l~~L~~L~L-~~n~i~~~~~~~~l~~L~~L--~L~~n~l~~~~---~~~~l~~L~~L~l~~n~l~~~~--~-l~~l~ 129 (308)
T 1h6u_A 59 VQYLNNLIGLEL-KDNQITDLAPLKNLTKITEL--ELSGNPLKNVS---AIAGLQSIKTLDLTSTQITDVT--P-LAGLS 129 (308)
T ss_dssp GGGCTTCCEEEC-CSSCCCCCGGGTTCCSCCEE--ECCSCCCSCCG---GGTTCTTCCEEECTTSCCCCCG--G-GTTCT
T ss_pred hhccCCCCEEEc-cCCcCCCChhHccCCCCCEE--EccCCcCCCch---hhcCCCCCCEEECCCCCCCCch--h-hcCCC
Confidence 445677888888 66655443335567778888 7777 43321 2667788888888777543322 2 11335
Q ss_pred CcceEEEeeecCccccccCceeEEEecCCceEEEeeccccCce-eecCCCCeeEEEEEEEeCccccCCCccchHHhhcCC
Q 047191 198 TLKQCTLWVETEGEMFTQAEYKVRITAPSLERLHIMSDIFGKF-VVHDLNSLTDVILDIVYGEWSRVDPNRSIQLLQQLN 276 (341)
Q Consensus 198 sL~~L~i~~c~~~~~~~~~~~~~~~~~p~L~~l~~~~~~~~~~-~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~l~~~~ 276 (341)
+|+.|.+.+|.-... .. .-..++|++|.+.+...... .+..+++|+.+++.-..... ...+..++
T Consensus 130 ~L~~L~l~~n~l~~~-----~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~--------~~~l~~l~ 195 (308)
T 1h6u_A 130 NLQVLYLDLNQITNI-----SP-LAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISD--------ISPLASLP 195 (308)
T ss_dssp TCCEEECCSSCCCCC-----GG-GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC--------CGGGGGCT
T ss_pred CCCEEECCCCccCcC-----cc-ccCCCCccEEEccCCcCCCChhhcCCCCCCEEECCCCccCc--------ChhhcCCC
Confidence 677777777421111 11 12457788888876654332 25667777776654221111 22266778
Q ss_pred CceEEEEecchhhhccccccCCCCCCCcccEEEEEEc
Q 047191 277 NTTSLTVSYGVLCALDHAYHKWFPALSYLQHLEVAVG 313 (341)
Q Consensus 277 ~l~~L~l~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~ 313 (341)
+++.|.++.+.+..+. .+..+++|++|++..+
T Consensus 196 ~L~~L~L~~N~l~~~~-----~l~~l~~L~~L~l~~N 227 (308)
T 1h6u_A 196 NLIEVHLKNNQISDVS-----PLANTSNLFIVTLTNQ 227 (308)
T ss_dssp TCCEEECTTSCCCBCG-----GGTTCTTCCEEEEEEE
T ss_pred CCCEEEccCCccCccc-----cccCCCCCCEEEccCC
Confidence 8888888876654331 1335678888888876
No 45
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=98.10 E-value=5.7e-07 Score=90.14 Aligned_cols=125 Identities=14% Similarity=0.085 Sum_probs=75.9
Q ss_pred cccccCcceEEEEeeeeeecc-CCC-c-ccCCchhhhhhhccC--CCcchHHH--HHhcCCccceeEEeeeecCCCCcee
Q 047191 119 ELYASPSVEVLKLMSDFLLKV-PAG-G-TCFPNVKILTMQLES--PDNILTEK--LFCSCPSLEELSIQAYLNDEGPTTK 191 (341)
Q Consensus 119 ~~~~~~~L~~L~L~~~~~l~~-~~~-~-~~~~~L~~L~~~L~~--~~~~~l~~--ll~~cp~Le~L~L~~c~~~~~~~~~ 191 (341)
.+..+++|++|+| +++.+.. .+. . ..+++|++| +|.+ ++...... .+.+|+.|+.|++.++.-.+.. .
T Consensus 121 ~l~~l~~L~~L~L-s~n~l~~~~~~~~~~~l~~L~~L--~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~ 195 (768)
T 3rgz_A 121 SLGSCSGLKFLNV-SSNTLDFPGKVSGGLKLNSLEVL--DLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDV--D 195 (768)
T ss_dssp GGGGCTTCCEEEC-CSSEEECCSSCCSCCCCTTCSEE--ECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCC--B
T ss_pred HHhCCCCCCEEEC-cCCccCCcCCHHHhccCCCCCEE--ECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccC--C
Confidence 6667888888888 6555532 212 2 467889999 8888 54433332 3778899999999887543212 1
Q ss_pred EEEeCCCcceEEEeeecCccccccCceeEEEecCCceEEEeeccccCc---eeecCCCCeeEEEEE
Q 047191 192 FVISSSTLKQCTLWVETEGEMFTQAEYKVRITAPSLERLHIMSDIFGK---FVVHDLNSLTDVILD 254 (341)
Q Consensus 192 l~i~~~sL~~L~i~~c~~~~~~~~~~~~~~~~~p~L~~l~~~~~~~~~---~~~~~~~~L~~~~l~ 254 (341)
. -..++|+.|++..|.-.+. ... .-..++|++|.+.+..... ..+..+++|+.+++.
T Consensus 196 ~-~~l~~L~~L~Ls~n~l~~~----~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls 255 (768)
T 3rgz_A 196 V-SRCVNLEFLDVSSNNFSTG----IPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNIS 255 (768)
T ss_dssp C-TTCTTCCEEECCSSCCCSC----CCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECC
T ss_pred c-ccCCcCCEEECcCCcCCCC----Ccc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECC
Confidence 1 2456788888877422111 111 2246778888887655432 135566777766653
No 46
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.09 E-value=1.1e-07 Score=85.11 Aligned_cols=61 Identities=15% Similarity=0.202 Sum_probs=35.8
Q ss_pred hhcCCCceEEEEecchhhhccccccCCCCCCCcccEEEEEEcCCChhHHHHHHhcCCCCCcEEEe
Q 047191 272 LQQLNNTTSLTVSYGVLCALDHAYHKWFPALSYLQHLEVAVGAIGWAVLPVILSSSVHLQSLVLR 336 (341)
Q Consensus 272 l~~~~~l~~L~l~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~~~~~l~~ll~~cp~L~~L~l~ 336 (341)
+..+++++.|.++.+.+..+. ..+..+++|++|++..+......+..++..+|+|+.|.+.
T Consensus 210 ~~~l~~L~~L~L~~N~l~~l~----~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~ 270 (317)
T 3o53_A 210 FQSAAGVTWISLRNNKLVLIE----KALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (317)
T ss_dssp GGGGTTCSEEECTTSCCCEEC----TTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHH
T ss_pred hcccCcccEEECcCCcccchh----hHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECC
Confidence 456677777777766544321 1233566777777776643434566666777776665543
No 47
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=98.08 E-value=3.4e-07 Score=88.23 Aligned_cols=59 Identities=20% Similarity=0.112 Sum_probs=32.9
Q ss_pred cccccccCcceEEEEeeeeeeccCCCcccCCchhhhhhhccC--CCcchHHHHHhcCCccceeEEeeee
Q 047191 117 QIELYASPSVEVLKLMSDFLLKVPAGGTCFPNVKILTMQLES--PDNILTEKLFCSCPSLEELSIQAYL 183 (341)
Q Consensus 117 p~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~~~L~~--~~~~~l~~ll~~cp~Le~L~L~~c~ 183 (341)
|..+..+ +|++|++ .++.+...+. ..+++|++| .+.+ .... ... ..+|.|+.|++.++.
T Consensus 298 ~~~~~~~-~L~~L~l-~~n~~~~l~~-~~l~~L~~L--~l~~n~~~~~-~~~--~~~~~L~~L~l~~n~ 358 (570)
T 2z63_A 298 KDFSYNF-GWQHLEL-VNCKFGQFPT-LKLKSLKRL--TFTSNKGGNA-FSE--VDLPSLEFLDLSRNG 358 (570)
T ss_dssp CBCCSCC-CCSEEEE-ESCBCSSCCB-CBCSSCCEE--EEESCBSCCB-CCC--CBCTTCCEEECCSSC
T ss_pred hhhhccC-CccEEee-ccCcccccCc-ccccccCEE--eCcCCccccc-ccc--ccCCCCCEEeCcCCc
Confidence 5555556 8888888 7666654422 456667766 6665 1111 000 456666666666553
No 48
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=98.07 E-value=1.8e-06 Score=77.36 Aligned_cols=199 Identities=15% Similarity=0.073 Sum_probs=117.0
Q ss_pred cccccccCcceEEEEeeeeeeccCCCcccCCchhhhhhhccC--CCcchHHHHHhcCCccceeEEeeeecCCCCc-eeEE
Q 047191 117 QIELYASPSVEVLKLMSDFLLKVPAGGTCFPNVKILTMQLES--PDNILTEKLFCSCPSLEELSIQAYLNDEGPT-TKFV 193 (341)
Q Consensus 117 p~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~~~L~~--~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~-~~l~ 193 (341)
|..+..+++|++|+| ++..+...+.. -+++|+.| .+.+ ++. .....+.+++.|+.|.+.++.-..... +..-
T Consensus 93 ~~~~~~l~~L~~L~L-s~n~l~~l~~~-~~~~L~~L--~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 167 (330)
T 1xku_A 93 PGAFAPLVKLERLYL-SKNQLKELPEK-MPKTLQEL--RVHENEITK-VRKSVFNGLNQMIVVELGTNPLKSSGIENGAF 167 (330)
T ss_dssp TTTTTTCTTCCEEEC-CSSCCSBCCSS-CCTTCCEE--ECCSSCCCB-BCHHHHTTCTTCCEEECCSSCCCGGGBCTTGG
T ss_pred HHHhcCCCCCCEEEC-CCCcCCccChh-hcccccEE--ECCCCcccc-cCHhHhcCCccccEEECCCCcCCccCcChhhc
Confidence 555666788888888 66655544222 24788888 8887 443 233457889999999998874321000 0001
Q ss_pred EeCCCcceEEEeeecCccccccCceeEEEecCCceEEEeeccccCce---eecCCCCeeEEEEEEEeCccccCCCccchH
Q 047191 194 ISSSTLKQCTLWVETEGEMFTQAEYKVRITAPSLERLHIMSDIFGKF---VVHDLNSLTDVILDIVYGEWSRVDPNRSIQ 270 (341)
Q Consensus 194 i~~~sL~~L~i~~c~~~~~~~~~~~~~~~~~p~L~~l~~~~~~~~~~---~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~ 270 (341)
-..++|+.|.+..+.-... ... ..++|++|.+.+...... .+..+++|+.+++....... .. ..
T Consensus 168 ~~l~~L~~L~l~~n~l~~l----~~~---~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~----~~ 234 (330)
T 1xku_A 168 QGMKKLSYIRIADTNITTI----PQG---LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISA--VD----NG 234 (330)
T ss_dssp GGCTTCCEEECCSSCCCSC----CSS---CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCE--EC----TT
T ss_pred cCCCCcCEEECCCCccccC----Ccc---ccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCce--eC----hh
Confidence 1346888888887421111 001 127899999987654433 36677888887764321111 00 33
Q ss_pred HhhcCCCceEEEEecchhhhccccccCCCCCCCcccEEEEEEcCC---ChhHHH--HHHhcCCCCCcEEEee
Q 047191 271 LLQQLNNTTSLTVSYGVLCALDHAYHKWFPALSYLQHLEVAVGAI---GWAVLP--VILSSSVHLQSLVLRK 337 (341)
Q Consensus 271 ~l~~~~~l~~L~l~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~---~~~~l~--~ll~~cp~L~~L~l~~ 337 (341)
.+..+++++.|.++.+.+..+ ...+..+++|++|++..+.. ...... ......+.|+.|.+.+
T Consensus 235 ~~~~l~~L~~L~L~~N~l~~l----p~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~ 302 (330)
T 1xku_A 235 SLANTPHLRELHLNNNKLVKV----PGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFS 302 (330)
T ss_dssp TGGGSTTCCEEECCSSCCSSC----CTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCS
T ss_pred hccCCCCCCEEECCCCcCccC----ChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeec
Confidence 567788999999988765432 11234677899999987711 111110 0112347777777654
No 49
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=98.07 E-value=1.7e-07 Score=93.92 Aligned_cols=205 Identities=19% Similarity=0.088 Sum_probs=120.4
Q ss_pred cccccccCcceEEEEeeeeeec--cCC--CcccCCchhhhhhhccC--CCcchHHHHHhcCCccceeEEeeeecCCCCce
Q 047191 117 QIELYASPSVEVLKLMSDFLLK--VPA--GGTCFPNVKILTMQLES--PDNILTEKLFCSCPSLEELSIQAYLNDEGPTT 190 (341)
Q Consensus 117 p~~~~~~~~L~~L~L~~~~~l~--~~~--~~~~~~~L~~L~~~L~~--~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~ 190 (341)
|..+..+++|++|+| +++.+. .+. ....+++|++| +|.+ ++...-..++.+++.|+.|++.++.-.+..+.
T Consensus 93 ~~~~~~l~~L~~L~L-s~n~l~~~~~~~~~l~~l~~L~~L--~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 169 (768)
T 3rgz_A 93 VSGFKCSASLTSLDL-SRNSLSGPVTTLTSLGSCSGLKFL--NVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVV 169 (768)
T ss_dssp CCCCCCCTTCCEEEC-CSSEEEEEGGGGGGGGGCTTCCEE--ECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHH
T ss_pred chhhccCCCCCEEEC-CCCcCCCcCCChHHHhCCCCCCEE--ECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCCh
Confidence 466777899999999 766553 232 35578999999 9987 43332233346789999999998753211100
Q ss_pred eE--EEeCCCcceEEEeeecCccccccCceeEEEecCCceEEEeeccccCc--eeecCCCCeeEEEEEEEeCccccCCCc
Q 047191 191 KF--VISSSTLKQCTLWVETEGEMFTQAEYKVRITAPSLERLHIMSDIFGK--FVVHDLNSLTDVILDIVYGEWSRVDPN 266 (341)
Q Consensus 191 ~l--~i~~~sL~~L~i~~c~~~~~~~~~~~~~~~~~p~L~~l~~~~~~~~~--~~~~~~~~L~~~~l~~~~~~~~~~~~~ 266 (341)
.+ .-..++|+.|++..|.-.+. ... ...++|++|.+++..... ..+.++++|+.+++.-.....
T Consensus 170 ~~~~~~~l~~L~~L~Ls~n~l~~~-----~~~-~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~------ 237 (768)
T 3rgz_A 170 GWVLSDGCGELKHLAISGNKISGD-----VDV-SRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSG------ 237 (768)
T ss_dssp HHHHTTCCTTCCEEECCSSEEESC-----CBC-TTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCS------
T ss_pred hhhhhccCCCCCEEECCCCccccc-----CCc-ccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCC------
Confidence 00 11357899999988421111 111 357899999998775432 237788999988775322111
Q ss_pred cc-hHHhhcCCCceEEEEecchhhhcc-c-------------cccC-CCC-----CCCcccEEEEEEcCCChhHHHHHHh
Q 047191 267 RS-IQLLQQLNNTTSLTVSYGVLCALD-H-------------AYHK-WFP-----ALSYLQHLEVAVGAIGWAVLPVILS 325 (341)
Q Consensus 267 ~~-~~~l~~~~~l~~L~l~~~~~~~~~-~-------------~~~~-~~~-----~f~~L~~L~l~~~~~~~~~l~~ll~ 325 (341)
. ...+..+++++.|.++.+.+.... . .... .+| .+++|++|++..+... ..+...+.
T Consensus 238 -~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~-~~~p~~~~ 315 (768)
T 3rgz_A 238 -DFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFY-GAVPPFFG 315 (768)
T ss_dssp -CHHHHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEE-ECCCGGGG
T ss_pred -cccHHHhcCCCCCEEECCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCC-CccchHHh
Confidence 1 445667788888888765432110 0 0000 111 1356666666654110 01223356
Q ss_pred cCCCCCcEEEeee
Q 047191 326 SSVHLQSLVLRKV 338 (341)
Q Consensus 326 ~cp~L~~L~l~~~ 338 (341)
.+++|+.|++.+-
T Consensus 316 ~l~~L~~L~L~~n 328 (768)
T 3rgz_A 316 SCSLLESLALSSN 328 (768)
T ss_dssp GCTTCCEEECCSS
T ss_pred cCCCccEEECCCC
Confidence 7788888877653
No 50
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=98.06 E-value=5.9e-06 Score=78.73 Aligned_cols=63 Identities=14% Similarity=0.115 Sum_probs=41.3
Q ss_pred hcCCCceEEEEecchhhhccccccCCCCCCCcccEEEEEEc-CCChhHHHHHHhcCCCCCcEEEeee
Q 047191 273 QQLNNTTSLTVSYGVLCALDHAYHKWFPALSYLQHLEVAVG-AIGWAVLPVILSSSVHLQSLVLRKV 338 (341)
Q Consensus 273 ~~~~~l~~L~l~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~-~~~~~~l~~ll~~cp~L~~L~l~~~ 338 (341)
..+++++.|.++.+.+... ....+..+++|++|++..+ -.+...+...+..+++|+.|++.+-
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~---~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N 384 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDT---VFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQN 384 (520)
T ss_dssp SSCCCCCEEECCSSCCCTT---TTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSS
T ss_pred hhCCcccEEEeECCccChh---hhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCC
Confidence 4667777777776654321 1122346778888888877 3344456667888889988888653
No 51
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=98.05 E-value=4.4e-06 Score=80.41 Aligned_cols=206 Identities=14% Similarity=0.039 Sum_probs=104.5
Q ss_pred cccccccCcceEEEEeeeeeeccCC-CcccCCchhhhhhhccC--CCcchHHHHHhcCCccceeEEeeeecCCCCceeEE
Q 047191 117 QIELYASPSVEVLKLMSDFLLKVPA-GGTCFPNVKILTMQLES--PDNILTEKLFCSCPSLEELSIQAYLNDEGPTTKFV 193 (341)
Q Consensus 117 p~~~~~~~~L~~L~L~~~~~l~~~~-~~~~~~~L~~L~~~L~~--~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~l~ 193 (341)
|..+..+++|+.|++ .++.+...+ ....+ +|+.| .+.+ ++. +.. ..++.|+.|.+.++...... ..
T Consensus 275 ~~~~~~l~~L~~L~l-~~~~l~~l~~~~~~~-~L~~L--~l~~n~~~~--l~~--~~l~~L~~L~l~~n~~~~~~--~~- 343 (570)
T 2z63_A 275 IDLFNCLTNVSSFSL-VSVTIERVKDFSYNF-GWQHL--ELVNCKFGQ--FPT--LKLKSLKRLTFTSNKGGNAF--SE- 343 (570)
T ss_dssp TTTTGGGTTCSEEEE-ESCEECSCCBCCSCC-CCSEE--EEESCBCSS--CCB--CBCSSCCEEEEESCBSCCBC--CC-
T ss_pred hhhhcCcCcccEEEe-cCccchhhhhhhccC-CccEE--eeccCcccc--cCc--ccccccCEEeCcCCcccccc--cc-
Confidence 344455788999999 766665433 23445 88888 8877 332 111 47899999999888653211 11
Q ss_pred EeCCCcceEEEeeecCccccccCceeEEEecCCceEEEeeccccCce--eecCCCCeeEEEEEEEeCcc----ccCCC--
Q 047191 194 ISSSTLKQCTLWVETEGEMFTQAEYKVRITAPSLERLHIMSDIFGKF--VVHDLNSLTDVILDIVYGEW----SRVDP-- 265 (341)
Q Consensus 194 i~~~sL~~L~i~~c~~~~~~~~~~~~~~~~~p~L~~l~~~~~~~~~~--~~~~~~~L~~~~l~~~~~~~----~~~~~-- 265 (341)
...++|+.|.+..|.-... ..........++|++|.+.+...... .+..+++|+.+.+.-..... ..+..
T Consensus 344 ~~~~~L~~L~l~~n~l~~~--~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~ 421 (570)
T 2z63_A 344 VDLPSLEFLDLSRNGLSFK--GCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLR 421 (570)
T ss_dssp CBCTTCCEEECCSSCCBEE--EEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCT
T ss_pred ccCCCCCEEeCcCCccCcc--ccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCC
Confidence 3456777777776311000 00000001245566666655432211 14455555555442110000 00000
Q ss_pred -----------cc-c-hHHhhcCCCceEEEEecchhhhccccccCCCCCCCcccEEEEEEcCCChhHHHHHHhcCCCCCc
Q 047191 266 -----------NR-S-IQLLQQLNNTTSLTVSYGVLCALDHAYHKWFPALSYLQHLEVAVGAIGWAVLPVILSSSVHLQS 332 (341)
Q Consensus 266 -----------~~-~-~~~l~~~~~l~~L~l~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~~~~~l~~ll~~cp~L~~ 332 (341)
.. . ...+.++++++.|.++.+.+.....+ ..+..+++|++|++..+.... .....+..+|+|+.
T Consensus 422 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p--~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~ 498 (570)
T 2z63_A 422 NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP--DIFTELRNLTFLDLSQCQLEQ-LSPTAFNSLSSLQV 498 (570)
T ss_dssp TCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEEC--SCCTTCTTCCEEECTTSCCCE-ECTTTTTTCTTCCE
T ss_pred CCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccch--hhhhcccCCCEEECCCCcccc-CChhhhhcccCCCE
Confidence 00 0 23445666777777766544310011 223356788888887762111 11233567888888
Q ss_pred EEEeee
Q 047191 333 LVLRKV 338 (341)
Q Consensus 333 L~l~~~ 338 (341)
|++.+-
T Consensus 499 L~l~~n 504 (570)
T 2z63_A 499 LNMASN 504 (570)
T ss_dssp EECCSS
T ss_pred EeCCCC
Confidence 888763
No 52
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.05 E-value=3.9e-06 Score=85.01 Aligned_cols=58 Identities=21% Similarity=0.197 Sum_probs=32.0
Q ss_pred CCceEEEeeccccCce---eecCCCCeeEEEEEEEeCccccCCCccchHHhhcCCCceEEEEecchh
Q 047191 225 PSLERLHIMSDIFGKF---VVHDLNSLTDVILDIVYGEWSRVDPNRSIQLLQQLNNTTSLTVSYGVL 288 (341)
Q Consensus 225 p~L~~l~~~~~~~~~~---~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~L~l~~~~~ 288 (341)
++|+.|.+++...... .+..+++|+.+++......... ...+.++++++.|.++.+.+
T Consensus 266 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~------~~~~~~l~~L~~L~Ls~N~l 326 (844)
T 3j0a_A 266 SSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIA------DEAFYGLDNLQVLNLSYNLL 326 (844)
T ss_dssp SCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEEC------TTTTTTCSSCCEEEEESCCC
T ss_pred CCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCC------hHHhcCCCCCCEEECCCCCC
Confidence 5677777765543322 2556677777666532211100 23455667777777776554
No 53
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.04 E-value=7.5e-08 Score=87.74 Aligned_cols=204 Identities=14% Similarity=0.095 Sum_probs=102.5
Q ss_pred ccC-cceEEEEeeeeeeccCC--Cccc-----CCchhhhhhhccC--CCc---chHHHHHhcC-CccceeEEeeeecCCC
Q 047191 122 ASP-SVEVLKLMSDFLLKVPA--GGTC-----FPNVKILTMQLES--PDN---ILTEKLFCSC-PSLEELSIQAYLNDEG 187 (341)
Q Consensus 122 ~~~-~L~~L~L~~~~~l~~~~--~~~~-----~~~L~~L~~~L~~--~~~---~~l~~ll~~c-p~Le~L~L~~c~~~~~ 187 (341)
.++ +|++|+| +++.+.... .... +++|++| +|.+ +++ ..+...+..+ +.|+.|++.++.-...
T Consensus 48 ~~~~~L~~L~L-s~N~l~~~~~~~l~~~l~~~~~~L~~L--~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~ 124 (362)
T 3goz_A 48 NTPASVTSLNL-SGNSLGFKNSDELVQILAAIPANVTSL--NLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSK 124 (362)
T ss_dssp TCCTTCCEEEC-CSSCGGGSCHHHHHHHHHTSCTTCCEE--ECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGS
T ss_pred hCCCceeEEEC-cCCCCCHHHHHHHHHHHhccCCCccEE--ECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcH
Confidence 355 7888888 666654431 1112 2778888 7777 443 3444555566 7888888877753221
Q ss_pred CceeEE--Ee--CCCcceEEEeeecCccccccCceeE---EEec-CCceEEEeeccccCcee-------ecCC-CCeeEE
Q 047191 188 PTTKFV--IS--SSTLKQCTLWVETEGEMFTQAEYKV---RITA-PSLERLHIMSDIFGKFV-------VHDL-NSLTDV 251 (341)
Q Consensus 188 ~~~~l~--i~--~~sL~~L~i~~c~~~~~~~~~~~~~---~~~~-p~L~~l~~~~~~~~~~~-------~~~~-~~L~~~ 251 (341)
....+. +. .++|+.|++.+|.-.. .....+ .... ++|++|.+++....... +... ++|+.+
T Consensus 125 ~~~~l~~~l~~~~~~L~~L~Ls~N~l~~---~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L 201 (362)
T 3goz_A 125 SSSEFKQAFSNLPASITSLNLRGNDLGI---KSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSL 201 (362)
T ss_dssp CHHHHHHHHTTSCTTCCEEECTTSCGGG---SCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEE
T ss_pred HHHHHHHHHHhCCCceeEEEccCCcCCH---HHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEE
Confidence 200000 01 2478888887742110 000000 0112 37888888766543211 2334 367776
Q ss_pred EEEEEeCccccCCCccc-hHHhhc-CCCceEEEEecchhhhccccc-cCCCCCCCcccEEEEEEc---CCChhHHHHHHh
Q 047191 252 ILDIVYGEWSRVDPNRS-IQLLQQ-LNNTTSLTVSYGVLCALDHAY-HKWFPALSYLQHLEVAVG---AIGWAVLPVILS 325 (341)
Q Consensus 252 ~l~~~~~~~~~~~~~~~-~~~l~~-~~~l~~L~l~~~~~~~~~~~~-~~~~~~f~~L~~L~l~~~---~~~~~~l~~ll~ 325 (341)
++......... ... ...+.. .++++.|.++.+.+....... ...+..+++|+.|++..+ ......+..+.+
T Consensus 202 ~Ls~N~i~~~~---~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~ 278 (362)
T 3goz_A 202 DLSANLLGLKS---YAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGA 278 (362)
T ss_dssp ECTTSCGGGSC---HHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHT
T ss_pred ECCCCCCChhH---HHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHH
Confidence 65322111100 001 223333 357888888776543321101 112235667888888777 345555666666
Q ss_pred cCCCCCcEE
Q 047191 326 SSVHLQSLV 334 (341)
Q Consensus 326 ~cp~L~~L~ 334 (341)
..++++.|.
T Consensus 279 ~~~~l~~L~ 287 (362)
T 3goz_A 279 AFPNIQKII 287 (362)
T ss_dssp TSTTCCEEE
T ss_pred HhccCCceE
Confidence 666665554
No 54
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.01 E-value=3.9e-06 Score=81.58 Aligned_cols=99 Identities=16% Similarity=0.140 Sum_probs=61.5
Q ss_pred ecCCceEEEeeccccCce---eecCCCCeeEEEEEEEeCccccCCCccchHHhhcCCCceEEEEecchhhhccccccCCC
Q 047191 223 TAPSLERLHIMSDIFGKF---VVHDLNSLTDVILDIVYGEWSRVDPNRSIQLLQQLNNTTSLTVSYGVLCALDHAYHKWF 299 (341)
Q Consensus 223 ~~p~L~~l~~~~~~~~~~---~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~L~l~~~~~~~~~~~~~~~~ 299 (341)
..|+|++|.+++...... .+..+++|+.+++.-..... . ......+++++.|.++.+.+..+. ..+
T Consensus 252 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-----l--~~~~~~l~~L~~L~Ls~N~l~~i~----~~~ 320 (597)
T 3oja_B 252 NYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-----L--NLYGQPIPTLKVLDLSHNHLLHVE----RNQ 320 (597)
T ss_dssp GCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-----E--ECSSSCCTTCCEEECCSSCCCCCG----GGH
T ss_pred cCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-----C--CcccccCCCCcEEECCCCCCCccC----ccc
Confidence 367888888887665433 35677888877764211110 0 222346788889988877654221 112
Q ss_pred CCCCcccEEEEEEc-CCChhHHHHHHhcCCCCCcEEEee
Q 047191 300 PALSYLQHLEVAVG-AIGWAVLPVILSSSVHLQSLVLRK 337 (341)
Q Consensus 300 ~~f~~L~~L~l~~~-~~~~~~l~~ll~~cp~L~~L~l~~ 337 (341)
..+++|+.|+|..+ -.... +..+|+|+.|.+.+
T Consensus 321 ~~l~~L~~L~L~~N~l~~~~-----~~~~~~L~~L~l~~ 354 (597)
T 3oja_B 321 PQFDRLENLYLDHNSIVTLK-----LSTHHTLKNLTLSH 354 (597)
T ss_dssp HHHTTCSEEECCSSCCCCCC-----CCTTCCCSEEECCS
T ss_pred ccCCCCCEEECCCCCCCCcC-----hhhcCCCCEEEeeC
Confidence 35778888888887 22221 66778888888765
No 55
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.01 E-value=9.5e-07 Score=76.91 Aligned_cols=172 Identities=17% Similarity=0.124 Sum_probs=101.7
Q ss_pred CcceEEEEeeeeeeccCC--CcccCCchhhhhhhccC--CCcchHHHHHhcCCccceeEEeeeecCCCCceeEEEeCCCc
Q 047191 124 PSVEVLKLMSDFLLKVPA--GGTCFPNVKILTMQLES--PDNILTEKLFCSCPSLEELSIQAYLNDEGPTTKFVISSSTL 199 (341)
Q Consensus 124 ~~L~~L~L~~~~~l~~~~--~~~~~~~L~~L~~~L~~--~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~l~i~~~sL 199 (341)
++|++|+| ++..+...+ ...++++|++| +|.+ ++. .-..++.+++.|+.|.+.++.-..... ...-..++|
T Consensus 37 ~~l~~L~l-~~n~l~~~~~~~~~~l~~L~~L--~l~~n~l~~-i~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L 111 (270)
T 2o6q_A 37 ADTKKLDL-QSNKLSSLPSKAFHRLTKLRLL--YLNDNKLQT-LPAGIFKELKNLETLWVTDNKLQALPI-GVFDQLVNL 111 (270)
T ss_dssp TTCSEEEC-CSSCCSCCCTTSSSSCTTCCEE--ECCSSCCSC-CCTTTTSSCTTCCEEECCSSCCCCCCT-TTTTTCSSC
T ss_pred CCCCEEEC-cCCCCCeeCHHHhcCCCCCCEE--ECCCCccCe-eChhhhcCCCCCCEEECCCCcCCcCCH-hHcccccCC
Confidence 56888999 766554432 34567889999 8877 332 112335678999999998875432110 011134678
Q ss_pred ceEEEeeecCccccccCceeEEEecCCceEEEeeccccCce---eecCCCCeeEEEEEEEeCccccCCCccchHHhhcCC
Q 047191 200 KQCTLWVETEGEMFTQAEYKVRITAPSLERLHIMSDIFGKF---VVHDLNSLTDVILDIVYGEWSRVDPNRSIQLLQQLN 276 (341)
Q Consensus 200 ~~L~i~~c~~~~~~~~~~~~~~~~~p~L~~l~~~~~~~~~~---~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~l~~~~ 276 (341)
+.|.+.++.-... .....-..++|++|.+++...... .+..+++|+.+++.-..... .. ...+..++
T Consensus 112 ~~L~l~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~----~~~~~~l~ 181 (270)
T 2o6q_A 112 AELRLDRNQLKSL----PPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKR--VP----EGAFDKLT 181 (270)
T ss_dssp CEEECCSSCCCCC----CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC--CC----TTTTTTCT
T ss_pred CEEECCCCccCee----CHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcE--eC----hhHhccCC
Confidence 8888887321111 000011368899999987654432 25667888887764221111 00 33456778
Q ss_pred CceEEEEecchhhhccccccCCCCCCCcccEEEEEEc
Q 047191 277 NTTSLTVSYGVLCALDHAYHKWFPALSYLQHLEVAVG 313 (341)
Q Consensus 277 ~l~~L~l~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~ 313 (341)
+++.|.++.+.+..+. ...+..+++|+.|++..+
T Consensus 182 ~L~~L~L~~N~l~~~~---~~~~~~l~~L~~L~l~~N 215 (270)
T 2o6q_A 182 ELKTLKLDNNQLKRVP---EGAFDSLEKLKMLQLQEN 215 (270)
T ss_dssp TCCEEECCSSCCSCCC---TTTTTTCTTCCEEECCSS
T ss_pred CcCEEECCCCcCCcCC---HHHhccccCCCEEEecCC
Confidence 8899988877554321 112345778888888876
No 56
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=98.00 E-value=4.3e-07 Score=80.96 Aligned_cols=63 Identities=8% Similarity=0.005 Sum_probs=31.8
Q ss_pred cccccccCcceEEEEeeeeeec-cCC-CcccCCchhhhhhhccC--CCcchHHHHHhcCCccceeEEeeee
Q 047191 117 QIELYASPSVEVLKLMSDFLLK-VPA-GGTCFPNVKILTMQLES--PDNILTEKLFCSCPSLEELSIQAYL 183 (341)
Q Consensus 117 p~~~~~~~~L~~L~L~~~~~l~-~~~-~~~~~~~L~~L~~~L~~--~~~~~l~~ll~~cp~Le~L~L~~c~ 183 (341)
|..+..+++|++|+| ++..+. ..| ....+++|++| +|.+ ++. .+...+..+++|+.|.+.++.
T Consensus 94 p~~l~~l~~L~~L~L-s~n~l~~~~p~~~~~l~~L~~L--~Ls~N~l~~-~~p~~~~~l~~L~~L~L~~N~ 160 (313)
T 1ogq_A 94 PPAIAKLTQLHYLYI-THTNVSGAIPDFLSQIKTLVTL--DFSYNALSG-TLPPSISSLPNLVGITFDGNR 160 (313)
T ss_dssp CGGGGGCTTCSEEEE-EEECCEEECCGGGGGCTTCCEE--ECCSSEEES-CCCGGGGGCTTCCEEECCSSC
T ss_pred ChhHhcCCCCCEEEC-cCCeeCCcCCHHHhCCCCCCEE--eCCCCccCC-cCChHHhcCCCCCeEECcCCc
Confidence 445555666666666 544432 222 23445666666 6655 221 111224556666666666553
No 57
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=97.98 E-value=1.5e-05 Score=75.80 Aligned_cols=205 Identities=13% Similarity=0.045 Sum_probs=90.9
Q ss_pred CcceEEEEeeeeeeccCC--CcccCCchhhhhhhccC--CCcchHHHHHhcCCccceeEEeeeecCCCCceeEEEeCCCc
Q 047191 124 PSVEVLKLMSDFLLKVPA--GGTCFPNVKILTMQLES--PDNILTEKLFCSCPSLEELSIQAYLNDEGPTTKFVISSSTL 199 (341)
Q Consensus 124 ~~L~~L~L~~~~~l~~~~--~~~~~~~L~~L~~~L~~--~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~l~i~~~sL 199 (341)
++|++|+| +++.+...+ ...++++|++| +|.+ ++... ...+.++++|+.|++.++.-..++ .. ..++|
T Consensus 21 ~~L~~L~L-s~n~i~~~~~~~~~~l~~L~~L--~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~lp--~~--~l~~L 92 (520)
T 2z7x_B 21 QKTTILNI-SQNYISELWTSDILSLSKLRIL--IISHNRIQYLD-ISVFKFNQELEYLDLSHNKLVKIS--CH--PTVNL 92 (520)
T ss_dssp TTCSEEEC-CSSCCCCCCHHHHTTCTTCCEE--ECCSSCCCEEE-GGGGTTCTTCCEEECCSSCCCEEE--CC--CCCCC
T ss_pred ccccEEEC-CCCcccccChhhccccccccEE--ecCCCccCCcC-hHHhhcccCCCEEecCCCceeecC--cc--ccCCc
Confidence 56666666 555443321 23456666666 6666 33211 122455666666666665432111 11 34556
Q ss_pred ceEEEeeecCccccccCceeEEEecCCceEEEeeccccCceeecCCCCe--eEEEEEEEeC--ccc---cCCCc------
Q 047191 200 KQCTLWVETEGEMFTQAEYKVRITAPSLERLHIMSDIFGKFVVHDLNSL--TDVILDIVYG--EWS---RVDPN------ 266 (341)
Q Consensus 200 ~~L~i~~c~~~~~~~~~~~~~~~~~p~L~~l~~~~~~~~~~~~~~~~~L--~~~~l~~~~~--~~~---~~~~~------ 266 (341)
+.|.+.+|.-... ......-..++|++|.+++.......+..+++| +.+.+..... ... .+...
T Consensus 93 ~~L~L~~N~l~~~---~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~ 169 (520)
T 2z7x_B 93 KHLDLSFNAFDAL---PICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLH 169 (520)
T ss_dssp SEEECCSSCCSSC---CCCGGGGGCTTCCEEEEEESSCCGGGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEE
T ss_pred cEEeccCCccccc---cchhhhccCCcceEEEecCcccchhhccccccceeeEEEeecccccccccccccccccccceEE
Confidence 6666666311110 000001124566666666544333334444445 5544433211 000 00000
Q ss_pred ----------cc-hHHhhcCCCceEEEEecch----hhhccccccCCCCCCCcccEEEEEEcCCChhHHHHHHh--cCCC
Q 047191 267 ----------RS-IQLLQQLNNTTSLTVSYGV----LCALDHAYHKWFPALSYLQHLEVAVGAIGWAVLPVILS--SSVH 329 (341)
Q Consensus 267 ----------~~-~~~l~~~~~l~~L~l~~~~----~~~~~~~~~~~~~~f~~L~~L~l~~~~~~~~~l~~ll~--~cp~ 329 (341)
.. ...+..+++++.|.++.+. ...+. .....+..+++|++|.+..+......+..+.. .+++
T Consensus 170 l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~-~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~ 248 (520)
T 2z7x_B 170 IVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFL-SILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTT 248 (520)
T ss_dssp EECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHH-HHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSS
T ss_pred EEeccCcchhhhhhhhhhcccceeeccccccccccccceee-cchhhhccccchhhccccccccCHHHHHHHHHHhhhCc
Confidence 00 1223345666666666542 00000 00011234567777777766322222222222 2468
Q ss_pred CCcEEEeeeee
Q 047191 330 LQSLVLRKVII 340 (341)
Q Consensus 330 L~~L~l~~~~~ 340 (341)
|+.|.+.+-.|
T Consensus 249 L~~L~l~~n~l 259 (520)
T 2z7x_B 249 VWYFSISNVKL 259 (520)
T ss_dssp CSEEEEEEEEE
T ss_pred ccEEEeecccc
Confidence 88888877544
No 58
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=97.98 E-value=2.3e-06 Score=80.24 Aligned_cols=203 Identities=15% Similarity=0.055 Sum_probs=123.6
Q ss_pred cccccccCcceEEEEeeeeeecc-CC-CcccCCchhhhhhhccC--CCcchHHHHHhcCCccceeEEeeeecCCCCceeE
Q 047191 117 QIELYASPSVEVLKLMSDFLLKV-PA-GGTCFPNVKILTMQLES--PDNILTEKLFCSCPSLEELSIQAYLNDEGPTTKF 192 (341)
Q Consensus 117 p~~~~~~~~L~~L~L~~~~~l~~-~~-~~~~~~~L~~L~~~L~~--~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~l 192 (341)
|..+..+++|+.|+| ++..+.. ++ ...++++|++| +|.+ ++.- -...+.++++|+.|+|.++.-..+.. ..
T Consensus 92 ~~~~~~l~~L~~L~L-s~n~i~~~~~~~~~~l~~L~~L--~L~~n~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~~-~~ 166 (452)
T 3zyi_A 92 ADTFRHLHHLEVLQL-GRNSIRQIEVGAFNGLASLNTL--ELFDNWLTVI-PSGAFEYLSKLRELWLRNNPIESIPS-YA 166 (452)
T ss_dssp TTTTTTCTTCCEEEC-CSSCCCEECTTTTTTCTTCCEE--ECCSSCCSBC-CTTTSSSCTTCCEEECCSCCCCEECT-TT
T ss_pred HHHcCCCCCCCEEEC-CCCccCCcChhhccCcccCCEE--ECCCCcCCcc-ChhhhcccCCCCEEECCCCCcceeCH-hH
Confidence 445666889999999 6555532 22 34568899999 8888 3321 12335678999999998875321110 00
Q ss_pred EEeCCCcceEEEeeecCccccccCceeEEEecCCceEEEeeccccCc-eeecCCCCeeEEEEEEEeCccccCCCccchHH
Q 047191 193 VISSSTLKQCTLWVETEGEMFTQAEYKVRITAPSLERLHIMSDIFGK-FVVHDLNSLTDVILDIVYGEWSRVDPNRSIQL 271 (341)
Q Consensus 193 ~i~~~sL~~L~i~~c~~~~~~~~~~~~~~~~~p~L~~l~~~~~~~~~-~~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~ 271 (341)
.-..++|+.|.+..|....... ....-..++|++|.+++..... ..+..+++|+.+++.-..... .. ...
T Consensus 167 ~~~l~~L~~L~l~~~~~l~~i~---~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~--~~----~~~ 237 (452)
T 3zyi_A 167 FNRVPSLMRLDLGELKKLEYIS---EGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPE--IR----PGS 237 (452)
T ss_dssp TTTCTTCCEEECCCCTTCCEEC---TTTTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEECTTSCCSE--EC----GGG
T ss_pred HhcCCcccEEeCCCCCCccccC---hhhccCCCCCCEEECCCCcccccccccccccccEEECcCCcCcc--cC----ccc
Confidence 1134688888888752211100 0000135789999998765543 246677788877663211111 00 455
Q ss_pred hhcCCCceEEEEecchhhhccccccCCCCCCCcccEEEEEEcCCChhHHHHHHhcCCCCCcEEEee
Q 047191 272 LQQLNNTTSLTVSYGVLCALDHAYHKWFPALSYLQHLEVAVGAIGWAVLPVILSSSVHLQSLVLRK 337 (341)
Q Consensus 272 l~~~~~l~~L~l~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~~~~~l~~ll~~cp~L~~L~l~~ 337 (341)
+.++++++.|.++.+.+..+. ...+..+++|++|+|..+... ......+..+++|+.|++.+
T Consensus 238 ~~~l~~L~~L~L~~n~l~~~~---~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~ 299 (452)
T 3zyi_A 238 FHGLSSLKKLWVMNSQVSLIE---RNAFDGLASLVELNLAHNNLS-SLPHDLFTPLRYLVELHLHH 299 (452)
T ss_dssp GTTCTTCCEEECTTSCCCEEC---TTTTTTCTTCCEEECCSSCCS-CCCTTSSTTCTTCCEEECCS
T ss_pred ccCccCCCEEEeCCCcCceEC---HHHhcCCCCCCEEECCCCcCC-ccChHHhccccCCCEEEccC
Confidence 778899999999987654331 123446789999999887211 11123457789999998865
No 59
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=97.98 E-value=4.3e-07 Score=85.08 Aligned_cols=63 Identities=21% Similarity=0.219 Sum_probs=33.9
Q ss_pred HhhcCCCceEEEEecchhhhccccccCCCCCCCcccEEEEEEcCCChhHHHHHHhcCCCCCcEEEee
Q 047191 271 LLQQLNNTTSLTVSYGVLCALDHAYHKWFPALSYLQHLEVAVGAIGWAVLPVILSSSVHLQSLVLRK 337 (341)
Q Consensus 271 ~l~~~~~l~~L~l~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~~~~~l~~ll~~cp~L~~L~l~~ 337 (341)
.+..+++++.|.++.+.+..+. ...+..+++|++|++..+..... ...-+..+|+|+.|++.+
T Consensus 318 ~~~~l~~L~~L~Ls~N~l~~~~---~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~L~~ 380 (455)
T 3v47_A 318 AFWGLTHLLKLNLSQNFLGSID---SRMFENLDKLEVLDLSYNHIRAL-GDQSFLGLPNLKELALDT 380 (455)
T ss_dssp TTTTCTTCCEEECCSSCCCEEC---GGGGTTCTTCCEEECCSSCCCEE-CTTTTTTCTTCCEEECCS
T ss_pred HhcCcccCCEEECCCCccCCcC---hhHhcCcccCCEEECCCCccccc-ChhhccccccccEEECCC
Confidence 3455667777777665443221 11123566777777776521110 112355678888887765
No 60
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=97.97 E-value=5.1e-06 Score=79.67 Aligned_cols=70 Identities=19% Similarity=0.068 Sum_probs=42.5
Q ss_pred hHHhhcCCCceEEEEecchhhhccccccCCCCCCCcccEEEEEEc-CCChhHHHHHHhcCCCCCcEEEeee
Q 047191 269 IQLLQQLNNTTSLTVSYGVLCALDHAYHKWFPALSYLQHLEVAVG-AIGWAVLPVILSSSVHLQSLVLRKV 338 (341)
Q Consensus 269 ~~~l~~~~~l~~L~l~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~-~~~~~~l~~ll~~cp~L~~L~l~~~ 338 (341)
..+.+.+++++.|.++.+.+..........+..+++|+.|++..+ -.+.......+..+++|+.|++.+-
T Consensus 327 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N 397 (549)
T 2z81_A 327 CSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRN 397 (549)
T ss_dssp HHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTC
T ss_pred HHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCC
Confidence 455567888888888876543211000112335678888888776 2233323355778888888887653
No 61
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=97.96 E-value=4.2e-06 Score=69.12 Aligned_cols=55 Identities=20% Similarity=0.192 Sum_probs=32.6
Q ss_pred ccCcceEEEEeeeeeeccCCCcccCCchhhhhhhccC--CCcchHHHHHhcCCccceeEEeee
Q 047191 122 ASPSVEVLKLMSDFLLKVPAGGTCFPNVKILTMQLES--PDNILTEKLFCSCPSLEELSIQAY 182 (341)
Q Consensus 122 ~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~~~L~~--~~~~~l~~ll~~cp~Le~L~L~~c 182 (341)
.+++|++|++ ++..+...+....+++|++| .+.+ +++-. .+..+|+|+.|.+.++
T Consensus 42 ~l~~L~~L~l-~~n~i~~l~~l~~l~~L~~L--~l~~n~~~~~~---~l~~l~~L~~L~l~~n 98 (197)
T 4ezg_A 42 QMNSLTYITL-ANINVTDLTGIEYAHNIKDL--TINNIHATNYN---PISGLSNLERLRIMGK 98 (197)
T ss_dssp HHHTCCEEEE-ESSCCSCCTTGGGCTTCSEE--EEESCCCSCCG---GGTTCTTCCEEEEECT
T ss_pred hcCCccEEec-cCCCccChHHHhcCCCCCEE--EccCCCCCcch---hhhcCCCCCEEEeECC
Confidence 3567788888 66555543345556677777 6666 22211 2555666666666665
No 62
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=97.94 E-value=3e-07 Score=87.25 Aligned_cols=76 Identities=18% Similarity=0.147 Sum_probs=38.7
Q ss_pred ccccccCcceEEEEeeeeeeccCCCcccCCchhhhhhhccC--CCcchHHHHHhcCCccceeEEeeeecCCCCceeEEEe
Q 047191 118 IELYASPSVEVLKLMSDFLLKVPAGGTCFPNVKILTMQLES--PDNILTEKLFCSCPSLEELSIQAYLNDEGPTTKFVIS 195 (341)
Q Consensus 118 ~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~~~L~~--~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~l~i~ 195 (341)
..+..+++|+.|+| +++.+...+....+++|+.| +|.+ +++- ...|.|+.|.+.++.-.+.. .-.
T Consensus 52 ~~~~~l~~L~~L~L-s~N~l~~~~~l~~l~~L~~L--~Ls~N~l~~l------~~~~~L~~L~L~~N~l~~~~----~~~ 118 (487)
T 3oja_A 52 ADLAPFTKLELLNL-SSNVLYETLDLESLSTLRTL--DLNNNYVQEL------LVGPSIETLHAANNNISRVS----CSR 118 (487)
T ss_dssp GGGTTCTTCCEEEC-TTSCCEEEEECTTCTTCCEE--ECCSSEEEEE------EECTTCCEEECCSSCCCCEE----ECC
T ss_pred HHHhCCCCCCEEEe-eCCCCCCCcccccCCCCCEE--EecCCcCCCC------CCCCCcCEEECcCCcCCCCC----ccc
Confidence 34455677777777 54444321124556777777 6666 3321 12366666666665432211 112
Q ss_pred CCCcceEEEee
Q 047191 196 SSTLKQCTLWV 206 (341)
Q Consensus 196 ~~sL~~L~i~~ 206 (341)
.++|+.|.+.+
T Consensus 119 l~~L~~L~L~~ 129 (487)
T 3oja_A 119 GQGKKNIYLAN 129 (487)
T ss_dssp CSSCEEEECCS
T ss_pred cCCCCEEECCC
Confidence 34555555555
No 63
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=97.93 E-value=2.8e-07 Score=89.68 Aligned_cols=36 Identities=19% Similarity=0.070 Sum_probs=18.7
Q ss_pred cccccCcceEEEEeeeeeeccCCCcccCCchhhhhhhccC
Q 047191 119 ELYASPSVEVLKLMSDFLLKVPAGGTCFPNVKILTMQLES 158 (341)
Q Consensus 119 ~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~~~L~~ 158 (341)
.+..+++|++|++ .++.+...|.. .+++|+.| .+.+
T Consensus 302 ~l~~~~~L~~L~l-~~n~l~~lp~~-~l~~L~~L--~l~~ 337 (606)
T 3vq2_A 302 DVPKHFKWQSLSI-IRCQLKQFPTL-DLPFLKSL--TLTM 337 (606)
T ss_dssp CCCTTCCCSEEEE-ESCCCSSCCCC-CCSSCCEE--EEES
T ss_pred hccccccCCEEEc-ccccCcccccC-CCCcccee--eccC
Confidence 3444566777777 55554433322 45555555 4444
No 64
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=97.92 E-value=1.1e-06 Score=77.41 Aligned_cols=168 Identities=15% Similarity=0.090 Sum_probs=71.7
Q ss_pred CcceEEEEeeeeeeccC--CCcccCCchhhhhhhccC--CCcchHHHHHhcCCccceeEEeeeecCCCCceeEEEeCCCc
Q 047191 124 PSVEVLKLMSDFLLKVP--AGGTCFPNVKILTMQLES--PDNILTEKLFCSCPSLEELSIQAYLNDEGPTTKFVISSSTL 199 (341)
Q Consensus 124 ~~L~~L~L~~~~~l~~~--~~~~~~~~L~~L~~~L~~--~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~l~i~~~sL 199 (341)
++++.|+| ++..+... .....+++|+.| .|.+ ++.-.. ...++.|+.|++.++.-..+. ...-..++|
T Consensus 31 ~~l~~L~L-~~N~l~~~~~~~~~~l~~L~~L--~L~~n~l~~~~~---~~~l~~L~~L~Ls~N~l~~l~--~~~~~l~~L 102 (290)
T 1p9a_G 31 KDTTILHL-SENLLYTFSLATLMPYTRLTQL--NLDRAELTKLQV---DGTLPVLGTLDLSHNQLQSLP--LLGQTLPAL 102 (290)
T ss_dssp TTCCEEEC-TTSCCSEEEGGGGTTCTTCCEE--ECTTSCCCEEEC---CSCCTTCCEEECCSSCCSSCC--CCTTTCTTC
T ss_pred CCCCEEEc-CCCcCCccCHHHhhcCCCCCEE--ECCCCccCcccC---CCCCCcCCEEECCCCcCCcCc--hhhccCCCC
Confidence 45566666 43333211 123345666666 6655 322111 145566666666655332222 111123456
Q ss_pred ceEEEeeecCccccccCceeEEEecCCceEEEeeccccCce---eecCCCCeeEEEEEEEeCccccCCCccchHHhhcCC
Q 047191 200 KQCTLWVETEGEMFTQAEYKVRITAPSLERLHIMSDIFGKF---VVHDLNSLTDVILDIVYGEWSRVDPNRSIQLLQQLN 276 (341)
Q Consensus 200 ~~L~i~~c~~~~~~~~~~~~~~~~~p~L~~l~~~~~~~~~~---~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~l~~~~ 276 (341)
+.|.+..+.-... ....--..++|++|.+++...... .+..+++|+.+++.-..... +. ...+..++
T Consensus 103 ~~L~l~~N~l~~l----~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~--l~----~~~~~~l~ 172 (290)
T 1p9a_G 103 TVLDVSFNRLTSL----PLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE--LP----AGLLNGLE 172 (290)
T ss_dssp CEEECCSSCCCCC----CSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSC--CC----TTTTTTCT
T ss_pred CEEECCCCcCccc----CHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCc--cC----HHHhcCcC
Confidence 6666655211100 000001235566666655433322 13344555555442111000 00 33445566
Q ss_pred CceEEEEecchhhhccccccCCCCCCCcccEEEEEEc
Q 047191 277 NTTSLTVSYGVLCALDHAYHKWFPALSYLQHLEVAVG 313 (341)
Q Consensus 277 ~l~~L~l~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~ 313 (341)
+++.|.++.+.++.+. ..+...++|++|.+..+
T Consensus 173 ~L~~L~L~~N~l~~ip----~~~~~~~~L~~l~L~~N 205 (290)
T 1p9a_G 173 NLDTLLLQENSLYTIP----KGFFGSHLLPFAFLHGN 205 (290)
T ss_dssp TCCEEECCSSCCCCCC----TTTTTTCCCSEEECCSC
T ss_pred CCCEEECCCCcCCccC----hhhcccccCCeEEeCCC
Confidence 6666666665544221 11223445666666655
No 65
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=97.91 E-value=2.3e-06 Score=74.92 Aligned_cols=179 Identities=17% Similarity=0.104 Sum_probs=102.7
Q ss_pred ccccccCcceEEEEeeeeeecc--CCCcccCCchhhhhhhccC-C-CcchHHHHHhcCCccceeEEeeeecCCCCceeEE
Q 047191 118 IELYASPSVEVLKLMSDFLLKV--PAGGTCFPNVKILTMQLES-P-DNILTEKLFCSCPSLEELSIQAYLNDEGPTTKFV 193 (341)
Q Consensus 118 ~~~~~~~~L~~L~L~~~~~l~~--~~~~~~~~~L~~L~~~L~~-~-~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~l~ 193 (341)
..+..+++|+.|+| ++..+.. +....++++|++| +|.+ - -.......+.++++|+.|++.++.-....+ ..-
T Consensus 50 ~~~~~~~~L~~L~l-~~n~l~~~~~~~~~~l~~L~~L--~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~ 125 (285)
T 1ozn_A 50 ASFRACRNLTILWL-HSNVLARIDAAAFTGLALLEQL--DLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGP-GLF 125 (285)
T ss_dssp TTTTTCTTCCEEEC-CSSCCCEECTTTTTTCTTCCEE--ECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCT-TTT
T ss_pred HHcccCCCCCEEEC-CCCccceeCHhhcCCccCCCEE--eCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECH-hHh
Confidence 34555788888888 6554432 2234567888888 8776 2 122113336678888888888875432210 001
Q ss_pred EeCCCcceEEEeeecCccccccCceeEEEecCCceEEEeeccccCce---eecCCCCeeEEEEEEEeCccccCCCccchH
Q 047191 194 ISSSTLKQCTLWVETEGEMFTQAEYKVRITAPSLERLHIMSDIFGKF---VVHDLNSLTDVILDIVYGEWSRVDPNRSIQ 270 (341)
Q Consensus 194 i~~~sL~~L~i~~c~~~~~~~~~~~~~~~~~p~L~~l~~~~~~~~~~---~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~ 270 (341)
-..++|+.|.+.++.-... .....-..++|++|.+.+...... .+..+++|+.+++.-..... .. ..
T Consensus 126 ~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~----~~ 195 (285)
T 1ozn_A 126 RGLAALQYLYLQDNALQAL----PDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH--VH----PH 195 (285)
T ss_dssp TTCTTCCEEECCSSCCCCC----CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE--EC----TT
T ss_pred hCCcCCCEEECCCCccccc----CHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccc--cC----Hh
Confidence 1346788888877421111 000011357888888887654432 25667788877664321111 00 33
Q ss_pred HhhcCCCceEEEEecchhhhccccccCCCCCCCcccEEEEEEc
Q 047191 271 LLQQLNNTTSLTVSYGVLCALDHAYHKWFPALSYLQHLEVAVG 313 (341)
Q Consensus 271 ~l~~~~~l~~L~l~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~ 313 (341)
.+..+++++.|.++.+.+..+... .+..+++|++|++..+
T Consensus 196 ~~~~l~~L~~L~l~~n~l~~~~~~---~~~~l~~L~~L~l~~N 235 (285)
T 1ozn_A 196 AFRDLGRLMTLYLFANNLSALPTE---ALAPLRALQYLRLNDN 235 (285)
T ss_dssp TTTTCTTCCEEECCSSCCSCCCHH---HHTTCTTCCEEECCSS
T ss_pred HccCcccccEeeCCCCcCCcCCHH---HcccCcccCEEeccCC
Confidence 456788999999988765433111 1235778999999887
No 66
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=97.90 E-value=2.2e-06 Score=86.63 Aligned_cols=34 Identities=24% Similarity=0.469 Sum_probs=18.7
Q ss_pred CCCcccEEEEEEcCCChhHHHHHHhcCCCCCcEEEe
Q 047191 301 ALSYLQHLEVAVGAIGWAVLPVILSSSVHLQSLVLR 336 (341)
Q Consensus 301 ~f~~L~~L~l~~~~~~~~~l~~ll~~cp~L~~L~l~ 336 (341)
.+++|+.|+|..+... .+..-+..+++|+.|.+.
T Consensus 751 ~l~~L~~L~Ls~N~L~--~lp~~l~~L~~L~~L~Ls 784 (876)
T 4ecn_A 751 TLPYLSNMDVSYNCFS--SFPTQPLNSSQLKAFGIR 784 (876)
T ss_dssp TCTTCCEEECCSSCCS--SCCCGGGGCTTCCEEECC
T ss_pred cCCCcCEEEeCCCCCC--ccchhhhcCCCCCEEECC
Confidence 4566777776665111 122234566777777764
No 67
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=97.90 E-value=2.8e-06 Score=76.11 Aligned_cols=201 Identities=9% Similarity=0.032 Sum_probs=126.1
Q ss_pred cccccccCcceEEEEeeeeeeccCC--CcccCCchhhhhhhccC--CCc-chHHHHHhcCCccceeEEeeeecCCCCcee
Q 047191 117 QIELYASPSVEVLKLMSDFLLKVPA--GGTCFPNVKILTMQLES--PDN-ILTEKLFCSCPSLEELSIQAYLNDEGPTTK 191 (341)
Q Consensus 117 p~~~~~~~~L~~L~L~~~~~l~~~~--~~~~~~~L~~L~~~L~~--~~~-~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~ 191 (341)
|..++ ++|+.|++ ++..+...+ ...++++|+.| .+.+ ++. ......+.++++|+.|.+.++.-..+. .
T Consensus 116 ~~~~~--~~L~~L~l-~~n~l~~~~~~~~~~l~~L~~L--~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~--~ 188 (330)
T 1xku_A 116 PEKMP--KTLQELRV-HENEITKVRKSVFNGLNQMIVV--ELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIP--Q 188 (330)
T ss_dssp CSSCC--TTCCEEEC-CSSCCCBBCHHHHTTCTTCCEE--ECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCC--S
T ss_pred Chhhc--ccccEEEC-CCCcccccCHhHhcCCccccEE--ECCCCcCCccCcChhhccCCCCcCEEECCCCccccCC--c
Confidence 44444 78999999 766654332 24568999999 9988 443 233445788999999999998654333 1
Q ss_pred EEEeCCCcceEEEeeecCccccccCceeEEEecCCceEEEeeccccCce---eecCCCCeeEEEEEEEeCccccCCCccc
Q 047191 192 FVISSSTLKQCTLWVETEGEMFTQAEYKVRITAPSLERLHIMSDIFGKF---VVHDLNSLTDVILDIVYGEWSRVDPNRS 268 (341)
Q Consensus 192 l~i~~~sL~~L~i~~c~~~~~~~~~~~~~~~~~p~L~~l~~~~~~~~~~---~~~~~~~L~~~~l~~~~~~~~~~~~~~~ 268 (341)
...++|+.|.+.++.-... ... ..-..++|++|.+++...... .+..+++|+.+++.-..... +
T Consensus 189 --~~~~~L~~L~l~~n~l~~~---~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~--l----- 255 (330)
T 1xku_A 189 --GLPPSLTELHLDGNKITKV---DAA-SLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK--V----- 255 (330)
T ss_dssp --SCCTTCSEEECTTSCCCEE---CTG-GGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSS--C-----
T ss_pred --cccccCCEEECCCCcCCcc---CHH-HhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCcc--C-----
Confidence 1127899999988421111 000 011368999999988765432 36678889988775321111 0
Q ss_pred hHHhhcCCCceEEEEecchhhhcccccc---CCCCCCCcccEEEEEEcCC-ChhHHHHHHhcCCCCCcEEEee
Q 047191 269 IQLLQQLNNTTSLTVSYGVLCALDHAYH---KWFPALSYLQHLEVAVGAI-GWAVLPVILSSSVHLQSLVLRK 337 (341)
Q Consensus 269 ~~~l~~~~~l~~L~l~~~~~~~~~~~~~---~~~~~f~~L~~L~l~~~~~-~~~~l~~ll~~cp~L~~L~l~~ 337 (341)
...+..+++++.|.++.+.+..+..... .....+++|+.|++..+.. .+.....-..++++++.+++.+
T Consensus 256 p~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~ 328 (330)
T 1xku_A 256 PGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGN 328 (330)
T ss_dssp CTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC--
T ss_pred ChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecc
Confidence 2335678999999999887665432111 1112457888999887722 2232334577789999998865
No 68
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=97.89 E-value=2.6e-05 Score=75.15 Aligned_cols=62 Identities=15% Similarity=0.103 Sum_probs=37.4
Q ss_pred hcCCCceEEEEecchhhhccccccCCCCCCCcccEEEEEEc-CCChhHHHHHHhcCCCCCcEEEee
Q 047191 273 QQLNNTTSLTVSYGVLCALDHAYHKWFPALSYLQHLEVAVG-AIGWAVLPVILSSSVHLQSLVLRK 337 (341)
Q Consensus 273 ~~~~~l~~L~l~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~-~~~~~~l~~ll~~cp~L~~L~l~~ 337 (341)
..+++++.|.++.+.+... ....+..+++|+.|++..+ -.+...+...+..+++|+.|++.+
T Consensus 350 ~~l~~L~~L~l~~n~l~~~---~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~ 412 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDS---VFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSL 412 (562)
T ss_dssp SSCCCCCEEECCSSCCCTT---TTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTT
T ss_pred cCCCCceEEECCCCccccc---hhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCC
Confidence 4566677777766544321 1122345678888888776 233344555677778888887764
No 69
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.89 E-value=4.1e-07 Score=73.51 Aligned_cols=89 Identities=13% Similarity=-0.045 Sum_probs=56.7
Q ss_pred cccccccCcceEEEEeeeeeeccC--CCcccCCchhhhhhhccC---CCcchHHHHHhc---CCccceeEEeeeecCC--
Q 047191 117 QIELYASPSVEVLKLMSDFLLKVP--AGGTCFPNVKILTMQLES---PDNILTEKLFCS---CPSLEELSIQAYLNDE-- 186 (341)
Q Consensus 117 p~~~~~~~~L~~L~L~~~~~l~~~--~~~~~~~~L~~L~~~L~~---~~~~~l~~ll~~---cp~Le~L~L~~c~~~~-- 186 (341)
|........|++|+| ++|.+.+. ....++++|+.| +|.+ ++|.++..+... ||.||+|+|.+|....
T Consensus 54 P~~~~~~~~L~~LDL-s~~~Itd~GL~~L~~~~~L~~L--~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~ 130 (176)
T 3e4g_A 54 PTGPLDKYKIQAIDA-TDSCIMSIGFDHMEGLQYVEKI--RLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDK 130 (176)
T ss_dssp CCCSTTCCCEEEEEE-ESCCCCGGGGGGGTTCSCCCEE--EEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHH
T ss_pred CcccCCCceEeEEeC-cCCCccHHHHHHhcCCCCCCEE--EeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHH
Confidence 443334567888888 77665432 123467888888 8887 888888887653 7788888888886431
Q ss_pred -CCceeEEEeCCCcceEEEeeecCcc
Q 047191 187 -GPTTKFVISSSTLKQCTLWVETEGE 211 (341)
Q Consensus 187 -~~~~~l~i~~~sL~~L~i~~c~~~~ 211 (341)
+. .+. .+++|+.|.+.+|...+
T Consensus 131 Gl~--~L~-~~~~L~~L~L~~c~~It 153 (176)
T 3e4g_A 131 GII--ALH-HFRNLKYLFLSDLPGVK 153 (176)
T ss_dssp HHH--HGG-GCTTCCEEEEESCTTCC
T ss_pred HHH--HHh-cCCCCCEEECCCCCCCC
Confidence 11 221 35666666666664433
No 70
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=97.88 E-value=1.6e-05 Score=68.82 Aligned_cols=117 Identities=20% Similarity=0.131 Sum_probs=73.9
Q ss_pred ccccCcceEEEEeeeeeeccCCCcccCCchhhhhhhccC--CCcchHHHHHhcCCccceeEEeeeecCCCCceeEEEeCC
Q 047191 120 LYASPSVEVLKLMSDFLLKVPAGGTCFPNVKILTMQLES--PDNILTEKLFCSCPSLEELSIQAYLNDEGPTTKFVISSS 197 (341)
Q Consensus 120 ~~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~~~L~~--~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~l~i~~~ 197 (341)
+..+++|+.|++ .++.+...+....+++|+.| +|.+ +++-.- +.+++.|+.|.+.++.-.++. .+ ..+
T Consensus 37 ~~~l~~L~~L~l-~~n~i~~l~~l~~l~~L~~L--~L~~N~i~~~~~---l~~l~~L~~L~L~~N~l~~l~--~~--~~~ 106 (263)
T 1xeu_A 37 QKELSGVQNFNG-DNSNIQSLAGMQFFTNLKEL--HLSHNQISDLSP---LKDLTKLEELSVNRNRLKNLN--GI--PSA 106 (263)
T ss_dssp HHHHTTCSEEEC-TTSCCCCCTTGGGCTTCCEE--ECCSSCCCCCGG---GTTCSSCCEEECCSSCCSCCT--TC--CCS
T ss_pred hhhcCcCcEEEC-cCCCcccchHHhhCCCCCEE--ECCCCccCCChh---hccCCCCCEEECCCCccCCcC--cc--ccC
Confidence 445789999999 87777665566778999999 9988 444322 788999999999998654433 22 227
Q ss_pred CcceEEEeeecCccccccCceeEEEecCCceEEEeeccccCce-eecCCCCeeEEE
Q 047191 198 TLKQCTLWVETEGEMFTQAEYKVRITAPSLERLHIMSDIFGKF-VVHDLNSLTDVI 252 (341)
Q Consensus 198 sL~~L~i~~c~~~~~~~~~~~~~~~~~p~L~~l~~~~~~~~~~-~~~~~~~L~~~~ 252 (341)
+|+.|.+.+|.-... .. ....++|+.|.+++...... .+..+++|+.++
T Consensus 107 ~L~~L~L~~N~l~~~-----~~-l~~l~~L~~L~Ls~N~i~~~~~l~~l~~L~~L~ 156 (263)
T 1xeu_A 107 CLSRLFLDNNELRDT-----DS-LIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLD 156 (263)
T ss_dssp SCCEEECCSSCCSBS-----GG-GTTCTTCCEEECTTSCCCBCGGGGGCTTCCEEE
T ss_pred cccEEEccCCccCCC-----hh-hcCcccccEEECCCCcCCCChHHccCCCCCEEE
Confidence 888888888421111 10 11356777777765543221 233344444443
No 71
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=97.88 E-value=1.3e-05 Score=78.12 Aligned_cols=73 Identities=21% Similarity=0.129 Sum_probs=41.5
Q ss_pred cccccccCcceEEEEeeeeeeccCCCcccCCchhhhhhhccC--CCcchHHHHHhcCCccceeEEeeeecCCCCceeEEE
Q 047191 117 QIELYASPSVEVLKLMSDFLLKVPAGGTCFPNVKILTMQLES--PDNILTEKLFCSCPSLEELSIQAYLNDEGPTTKFVI 194 (341)
Q Consensus 117 p~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~~~L~~--~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~l~i 194 (341)
|..++ ++|+.|+| .++.+...+. .+++|++| +|.+ ++. +. ...++|+.|++.++.-..+. .
T Consensus 56 p~~l~--~~L~~L~L-~~N~l~~lp~--~l~~L~~L--~Ls~N~l~~--lp---~~l~~L~~L~Ls~N~l~~l~--~--- 118 (622)
T 3g06_A 56 PDCLP--AHITTLVI-PDNNLTSLPA--LPPELRTL--EVSGNQLTS--LP---VLPPGLLELSIFSNPLTHLP--A--- 118 (622)
T ss_dssp CSCCC--TTCSEEEE-CSCCCSCCCC--CCTTCCEE--EECSCCCSC--CC---CCCTTCCEEEECSCCCCCCC--C---
T ss_pred ChhhC--CCCcEEEe-cCCCCCCCCC--cCCCCCEE--EcCCCcCCc--CC---CCCCCCCEEECcCCcCCCCC--C---
Confidence 44443 67777777 6555554323 46777777 7776 332 11 15677777777776543323 2
Q ss_pred eCCCcceEEEee
Q 047191 195 SSSTLKQCTLWV 206 (341)
Q Consensus 195 ~~~sL~~L~i~~ 206 (341)
..++|+.|.+.+
T Consensus 119 ~l~~L~~L~L~~ 130 (622)
T 3g06_A 119 LPSGLCKLWIFG 130 (622)
T ss_dssp CCTTCCEEECCS
T ss_pred CCCCcCEEECCC
Confidence 345566666655
No 72
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=97.86 E-value=2.3e-08 Score=93.90 Aligned_cols=210 Identities=17% Similarity=0.065 Sum_probs=97.7
Q ss_pred cCcceEEEEeeeeeeccCC-C-c-----ccCCchhhhhhhccC--CCcch---HHHHHhcCCccceeEEeeeecCCCCc-
Q 047191 123 SPSVEVLKLMSDFLLKVPA-G-G-----TCFPNVKILTMQLES--PDNIL---TEKLFCSCPSLEELSIQAYLNDEGPT- 189 (341)
Q Consensus 123 ~~~L~~L~L~~~~~l~~~~-~-~-----~~~~~L~~L~~~L~~--~~~~~---l~~ll~~cp~Le~L~L~~c~~~~~~~- 189 (341)
+++|++|++ +++.+.... . . ...++|++| +|.+ +++.+ +...+..|+.|+.|++.++.-.....
T Consensus 169 ~~~L~~L~L-~~n~i~~~~~~~l~~~l~~~~~~L~~L--~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~ 245 (461)
T 1z7x_W 169 KPDFKELTV-SNNDINEAGVRVLCQGLKDSPCQLEAL--KLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMA 245 (461)
T ss_dssp CTTCCEEEC-CSSBCHHHHHHHHHHHHHHSCCCCCEE--ECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHH
T ss_pred CCCCCEEEC-cCCCcchHHHHHHHHHHhcCCCCceEE--EccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHH
Confidence 566666666 544432210 0 0 013466666 6666 44443 34445567777777776663210000
Q ss_pred ---eeEEEeCCCcceEEEeeecCccccccCceeEEEecCCceEEEeeccccCce---e-----ecCCCCeeEEEEEEEeC
Q 047191 190 ---TKFVISSSTLKQCTLWVETEGEMFTQAEYKVRITAPSLERLHIMSDIFGKF---V-----VHDLNSLTDVILDIVYG 258 (341)
Q Consensus 190 ---~~l~i~~~sL~~L~i~~c~~~~~~~~~~~~~~~~~p~L~~l~~~~~~~~~~---~-----~~~~~~L~~~~l~~~~~ 258 (341)
+.+.-..++|+.|.+.+|.-............-..|+|++|.+++...... . ....++|+.+++.....
T Consensus 246 ~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l 325 (461)
T 1z7x_W 246 ELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSF 325 (461)
T ss_dssp HHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCC
T ss_pred HHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCC
Confidence 000002456777777664111100000001111256777777765543211 0 11224666655532211
Q ss_pred ccccCCCccc-hHHhhcCCCceEEEEecchhhhccccc-cCCCC-CCCcccEEEEEEcCCCh---hHHHHHHhcCCCCCc
Q 047191 259 EWSRVDPNRS-IQLLQQLNNTTSLTVSYGVLCALDHAY-HKWFP-ALSYLQHLEVAVGAIGW---AVLPVILSSSVHLQS 332 (341)
Q Consensus 259 ~~~~~~~~~~-~~~l~~~~~l~~L~l~~~~~~~~~~~~-~~~~~-~f~~L~~L~l~~~~~~~---~~l~~ll~~cp~L~~ 332 (341)
...... . ...+..+++++.|.++.+.+....... ...++ ..++|++|++..+..+. ..+...+..+|+|+.
T Consensus 326 ~~~~~~---~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~ 402 (461)
T 1z7x_W 326 TAACCS---HFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRE 402 (461)
T ss_dssp BGGGHH---HHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCE
T ss_pred chHHHH---HHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccE
Confidence 110000 1 345566788888888776543211000 01111 14577777777763332 345556677788888
Q ss_pred EEEeee
Q 047191 333 LVLRKV 338 (341)
Q Consensus 333 L~l~~~ 338 (341)
|++.+-
T Consensus 403 L~l~~N 408 (461)
T 1z7x_W 403 LDLSNN 408 (461)
T ss_dssp EECCSS
T ss_pred EECCCC
Confidence 777653
No 73
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=97.86 E-value=6.1e-07 Score=79.52 Aligned_cols=178 Identities=15% Similarity=0.050 Sum_probs=90.7
Q ss_pred ccccCcceEEEEeeeeeec-cCCCcccCCchhhhhhhccC--CCcchHHHHHhcCCccceeEEeeeecCCCCceeEEEeC
Q 047191 120 LYASPSVEVLKLMSDFLLK-VPAGGTCFPNVKILTMQLES--PDNILTEKLFCSCPSLEELSIQAYLNDEGPTTKFVISS 196 (341)
Q Consensus 120 ~~~~~~L~~L~L~~~~~l~-~~~~~~~~~~L~~L~~~L~~--~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~l~i~~ 196 (341)
++.+++|+.|+| ++..+. .+.....+++|++| ++.+ ++.......+.++++|+.|++.++.-..... ..--..
T Consensus 74 ~~~~~~L~~L~L-s~n~i~~l~~~~~~l~~L~~L--~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l 149 (306)
T 2z66_A 74 DFGTTSLKYLDL-SFNGVITMSSNFLGLEQLEHL--DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN-GIFNGL 149 (306)
T ss_dssp HHSCSCCCEEEC-CSCSEEEEEEEEETCTTCCEE--ECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECST-TTTTTC
T ss_pred cccccccCEEEC-CCCccccChhhcCCCCCCCEE--ECCCCcccccccchhhhhccCCCEEECCCCcCCccch-hhcccC
Confidence 344566777777 544332 22224456777777 7766 3222211235567777777776653211000 000123
Q ss_pred CCcceEEEeeecCccccccCceeEEEecCCceEEEeeccccCce---eecCCCCeeEEEEEEEeCccccCCCccchHHhh
Q 047191 197 STLKQCTLWVETEGEMFTQAEYKVRITAPSLERLHIMSDIFGKF---VVHDLNSLTDVILDIVYGEWSRVDPNRSIQLLQ 273 (341)
Q Consensus 197 ~sL~~L~i~~c~~~~~~~~~~~~~~~~~p~L~~l~~~~~~~~~~---~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~l~ 273 (341)
++|+.|.+.++.-.. ..........++|++|.+++...... .+..+++|+.+++.-..... .. ...+.
T Consensus 150 ~~L~~L~l~~n~l~~---~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~--~~----~~~~~ 220 (306)
T 2z66_A 150 SSLEVLKMAGNSFQE---NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFS--LD----TFPYK 220 (306)
T ss_dssp TTCCEEECTTCEEGG---GEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSB--CC----SGGGT
T ss_pred cCCCEEECCCCcccc---ccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCc--cC----hhhcc
Confidence 567777776631100 00011112356777777776554332 24566777766653211110 00 23456
Q ss_pred cCCCceEEEEecchhhhccccccCCCCCC-CcccEEEEEEc
Q 047191 274 QLNNTTSLTVSYGVLCALDHAYHKWFPAL-SYLQHLEVAVG 313 (341)
Q Consensus 274 ~~~~l~~L~l~~~~~~~~~~~~~~~~~~f-~~L~~L~l~~~ 313 (341)
.+++++.|.++.+.+.... ...+..+ ++|++|++..+
T Consensus 221 ~l~~L~~L~L~~N~l~~~~---~~~~~~~~~~L~~L~L~~N 258 (306)
T 2z66_A 221 CLNSLQVLDYSLNHIMTSK---KQELQHFPSSLAFLNLTQN 258 (306)
T ss_dssp TCTTCCEEECTTSCCCBCS---SSSCCCCCTTCCEEECTTC
T ss_pred CcccCCEeECCCCCCcccC---HHHHHhhhccCCEEEccCC
Confidence 7888999999877654321 1123344 38899998876
No 74
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=97.81 E-value=6.9e-06 Score=83.17 Aligned_cols=61 Identities=18% Similarity=0.180 Sum_probs=32.4
Q ss_pred hhcCCCceEEEEecchhhhccccccCCCCCCCcccEEEEEEcCC-ChhHHHHHHhcCCCCCcEEEeeee
Q 047191 272 LQQLNNTTSLTVSYGVLCALDHAYHKWFPALSYLQHLEVAVGAI-GWAVLPVILSSSVHLQSLVLRKVI 339 (341)
Q Consensus 272 l~~~~~l~~L~l~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~-~~~~l~~ll~~cp~L~~L~l~~~~ 339 (341)
+.++++++.|.++.+.+..+. ...+..+++|+.|+|+.+.. +... ..+. ++|+.|++++=.
T Consensus 476 ~~~l~~L~~L~Ls~N~l~~~~---~~~~~~l~~L~~L~Ls~N~l~~l~~--~~~~--~~L~~L~Ls~N~ 537 (844)
T 3j0a_A 476 FEGLSHLQVLYLNHNYLNSLP---PGVFSHLTALRGLSLNSNRLTVLSH--NDLP--ANLEILDISRNQ 537 (844)
T ss_dssp SSCBCCEECCCCCHHHHTTCC---TTSSSSCCSCSEEEEESCCCSSCCC--CCCC--SCCCEEEEEEEC
T ss_pred hcCcccccEEECCCCcccccC---hhHccchhhhheeECCCCCCCccCh--hhhh--ccccEEECCCCc
Confidence 445566666666665543221 11233567788888887611 1110 0011 788888877643
No 75
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=97.81 E-value=3e-06 Score=75.49 Aligned_cols=202 Identities=15% Similarity=0.028 Sum_probs=115.9
Q ss_pred cccccccCcceEEEEeee-eee-cc-CCCcccCCchhhhhhhccC--CCcchHHHHHhcCCccceeEEeeeecCCCCcee
Q 047191 117 QIELYASPSVEVLKLMSD-FLL-KV-PAGGTCFPNVKILTMQLES--PDNILTEKLFCSCPSLEELSIQAYLNDEGPTTK 191 (341)
Q Consensus 117 p~~~~~~~~L~~L~L~~~-~~l-~~-~~~~~~~~~L~~L~~~L~~--~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~ 191 (341)
|..+...+.|++|+| ++ ..+ .. +.....+++|++| +|.+ ++. .+...+..+++|+.|++.++.-.+..+ .
T Consensus 69 ~~~l~~l~~L~~L~L-~~~n~l~~~~p~~l~~l~~L~~L--~Ls~n~l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~ 143 (313)
T 1ogq_A 69 PSSLANLPYLNFLYI-GGINNLVGPIPPAIAKLTQLHYL--YITHTNVSG-AIPDFLSQIKTLVTLDFSYNALSGTLP-P 143 (313)
T ss_dssp CGGGGGCTTCSEEEE-EEETTEESCCCGGGGGCTTCSEE--EEEEECCEE-ECCGGGGGCTTCCEEECCSSEEESCCC-G
T ss_pred ChhHhCCCCCCeeeC-CCCCcccccCChhHhcCCCCCEE--ECcCCeeCC-cCCHHHhCCCCCCEEeCCCCccCCcCC-h
Confidence 566677888999999 52 333 22 3245568888888 8877 432 222236778899999888874321110 1
Q ss_pred EEEeCCCcceEEEeeecCccccccCceeEEEec-CCceEEEeeccccCce---eecCCCCeeEEEEEEEeCccccCCCcc
Q 047191 192 FVISSSTLKQCTLWVETEGEMFTQAEYKVRITA-PSLERLHIMSDIFGKF---VVHDLNSLTDVILDIVYGEWSRVDPNR 267 (341)
Q Consensus 192 l~i~~~sL~~L~i~~c~~~~~~~~~~~~~~~~~-p~L~~l~~~~~~~~~~---~~~~~~~L~~~~l~~~~~~~~~~~~~~ 267 (341)
.--..++|+.|.+..+.-.+. ....+. .. ++|++|.+.+...... .+..+. |+.+++.-......
T Consensus 144 ~~~~l~~L~~L~L~~N~l~~~---~p~~l~-~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~------ 212 (313)
T 1ogq_A 144 SISSLPNLVGITFDGNRISGA---IPDSYG-SFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGD------ 212 (313)
T ss_dssp GGGGCTTCCEEECCSSCCEEE---CCGGGG-CCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEEC------
T ss_pred HHhcCCCCCeEECcCCcccCc---CCHHHh-hhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCc------
Confidence 112346788888887421100 001111 13 3788888876543211 233333 66655532111100
Q ss_pred chHHhhcCCCceEEEEecchhhhccccccCCCCCCCcccEEEEEEcCCChhHHHHHHhcCCCCCcEEEeeee
Q 047191 268 SIQLLQQLNNTTSLTVSYGVLCALDHAYHKWFPALSYLQHLEVAVGAIGWAVLPVILSSSVHLQSLVLRKVI 339 (341)
Q Consensus 268 ~~~~l~~~~~l~~L~l~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~~~~~l~~ll~~cp~L~~L~l~~~~ 339 (341)
....+..+++++.|.++.+.+... .+ .+..+++|++|++..+.... .+...+..+|+|+.|++.+-.
T Consensus 213 ~~~~~~~l~~L~~L~L~~N~l~~~-~~---~~~~l~~L~~L~Ls~N~l~~-~~p~~l~~l~~L~~L~Ls~N~ 279 (313)
T 1ogq_A 213 ASVLFGSDKNTQKIHLAKNSLAFD-LG---KVGLSKNLNGLDLRNNRIYG-TLPQGLTQLKFLHSLNVSFNN 279 (313)
T ss_dssp CGGGCCTTSCCSEEECCSSEECCB-GG---GCCCCTTCCEEECCSSCCEE-CCCGGGGGCTTCCEEECCSSE
T ss_pred CCHHHhcCCCCCEEECCCCceeee-cC---cccccCCCCEEECcCCcccC-cCChHHhcCcCCCEEECcCCc
Confidence 044566889999999988765422 11 13357799999998872211 122346788999999987643
No 76
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=97.81 E-value=2.3e-06 Score=76.76 Aligned_cols=205 Identities=12% Similarity=0.067 Sum_probs=99.1
Q ss_pred cccccccCcceEEEEeeeeeeccCCCcccCCchhhhhhhccC--CCcchHHHHHhcCCccceeEEeeeecCC--CCceeE
Q 047191 117 QIELYASPSVEVLKLMSDFLLKVPAGGTCFPNVKILTMQLES--PDNILTEKLFCSCPSLEELSIQAYLNDE--GPTTKF 192 (341)
Q Consensus 117 p~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~~~L~~--~~~~~l~~ll~~cp~Le~L~L~~c~~~~--~~~~~l 192 (341)
|..+..+++|++|+| ++..+...+... +++|++| .+.+ ++.- -...+.++++|+.|.+.++.-.. ..+..+
T Consensus 95 ~~~~~~l~~L~~L~L-~~n~l~~l~~~~-~~~L~~L--~l~~n~i~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 169 (332)
T 2ft3_A 95 EKAFSPLRKLQKLYI-SKNHLVEIPPNL-PSSLVEL--RIHDNRIRKV-PKGVFSGLRNMNCIEMGGNPLENSGFEPGAF 169 (332)
T ss_dssp GGGSTTCTTCCEEEC-CSSCCCSCCSSC-CTTCCEE--ECCSSCCCCC-CSGGGSSCSSCCEEECCSCCCBGGGSCTTSS
T ss_pred HhHhhCcCCCCEEEC-CCCcCCccCccc-cccCCEE--ECCCCccCcc-CHhHhCCCccCCEEECCCCccccCCCCcccc
Confidence 344555677777777 555444332222 2677777 7666 3221 11225667777777776653210 000000
Q ss_pred --------EE-----------eCCCcceEEEeeecCccccccCceeEEEecCCceEEEeeccccCce---eecCCCCeeE
Q 047191 193 --------VI-----------SSSTLKQCTLWVETEGEMFTQAEYKVRITAPSLERLHIMSDIFGKF---VVHDLNSLTD 250 (341)
Q Consensus 193 --------~i-----------~~~sL~~L~i~~c~~~~~~~~~~~~~~~~~p~L~~l~~~~~~~~~~---~~~~~~~L~~ 250 (341)
.+ -.++|+.|.+.++.-... ........++|++|.+.+...... .+..+++|+.
T Consensus 170 ~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~----~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 245 (332)
T 2ft3_A 170 DGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAI----ELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRE 245 (332)
T ss_dssp CSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCC----CTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCE
T ss_pred cCCccCEEECcCCCCCccCccccCCCCEEECCCCcCCcc----CHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCE
Confidence 00 013455555544210000 000011245666666665443322 2455666666
Q ss_pred EEEEEEeCccccCCCccchHHhhcCCCceEEEEecchhhhccccccCCC---CCCCcccEEEEEEcC-CChhHHHHHHhc
Q 047191 251 VILDIVYGEWSRVDPNRSIQLLQQLNNTTSLTVSYGVLCALDHAYHKWF---PALSYLQHLEVAVGA-IGWAVLPVILSS 326 (341)
Q Consensus 251 ~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~L~l~~~~~~~~~~~~~~~~---~~f~~L~~L~l~~~~-~~~~~l~~ll~~ 326 (341)
+++.-..... + ...+..+++++.|.++.+.+..+........ ..+++|+.|.+..+. ..+......+..
T Consensus 246 L~L~~N~l~~--l-----p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~ 318 (332)
T 2ft3_A 246 LHLDNNKLSR--V-----PAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRC 318 (332)
T ss_dssp EECCSSCCCB--C-----CTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTT
T ss_pred EECCCCcCee--c-----ChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccc
Confidence 6553211110 0 2225677888888888776554321111111 125678888888762 222223345677
Q ss_pred CCCCCcEEEee
Q 047191 327 SVHLQSLVLRK 337 (341)
Q Consensus 327 cp~L~~L~l~~ 337 (341)
+++|+.|.+.+
T Consensus 319 l~~L~~l~l~~ 329 (332)
T 2ft3_A 319 VTDRLAIQFGN 329 (332)
T ss_dssp BCCSTTEEC--
T ss_pred cchhhhhhccc
Confidence 89999998865
No 77
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=97.81 E-value=5.7e-06 Score=77.16 Aligned_cols=41 Identities=17% Similarity=0.376 Sum_probs=37.0
Q ss_pred CCCccCCCChHHHHHHHcCCChhhhhhhhccccchHHhhcc
Q 047191 3 PAYRINALPDSVLCHILSYLPTKNVVATSILARRWKLVWTS 43 (341)
Q Consensus 3 ~~d~is~LPd~iL~~Ils~Lp~~~~~~~s~vskrWr~lw~~ 43 (341)
..|.|+.||+|++.+||+||+.+++++++.|||+|+++...
T Consensus 11 ~~d~~~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~ 51 (464)
T 3v7d_B 11 KRDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRK 51 (464)
T ss_dssp CCCHHHHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHHTT
T ss_pred ccCChHHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcC
Confidence 36889999999999999999999999999999999876443
No 78
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=97.77 E-value=4.7e-06 Score=81.69 Aligned_cols=201 Identities=9% Similarity=0.059 Sum_probs=103.5
Q ss_pred cccccc--ccCcceEEEEeeeeee-c-cCCCcccCCchhhhhhhccC---CCcchHHHHH------hcCCccceeEEeee
Q 047191 116 CQIELY--ASPSVEVLKLMSDFLL-K-VPAGGTCFPNVKILTMQLES---PDNILTEKLF------CSCPSLEELSIQAY 182 (341)
Q Consensus 116 ~p~~~~--~~~~L~~L~L~~~~~l-~-~~~~~~~~~~L~~L~~~L~~---~~~~~l~~ll------~~cp~Le~L~L~~c 182 (341)
.|..+. .+++|++|+| +++.+ . .|....++++|+.| +|.+ ++...+-.-+ ..+++|+.|.+.++
T Consensus 239 ip~~l~~~~l~~L~~L~L-~~n~l~~~~p~~l~~l~~L~~L--~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n 315 (636)
T 4eco_A 239 KTEDLKWDNLKDLTDVEV-YNCPNLTKLPTFLKALPEMQLI--NVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN 315 (636)
T ss_dssp TTSCCCGGGCTTCCEEEE-ECCTTCSSCCTTTTTCSSCCEE--ECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSS
T ss_pred CchhhhhcccCCCCEEEe-cCCcCCccChHHHhcCCCCCEE--ECcCCCCCccccchHHHHhhhccccCCCCCEEECCCC
Confidence 356666 7899999999 76543 2 33345678999999 8887 3321233222 34689999999888
Q ss_pred ecCCCCcee--EEEeCCCcceEEEeeecCccccccCceeEEEecCCceEEEeeccccCce--eecCCCC-eeEEEEEEEe
Q 047191 183 LNDEGPTTK--FVISSSTLKQCTLWVETEGEMFTQAEYKVRITAPSLERLHIMSDIFGKF--VVHDLNS-LTDVILDIVY 257 (341)
Q Consensus 183 ~~~~~~~~~--l~i~~~sL~~L~i~~c~~~~~~~~~~~~~~~~~p~L~~l~~~~~~~~~~--~~~~~~~-L~~~~l~~~~ 257 (341)
.-..++ . .--..++|+.|.+..|.-.+ ... .....++|++|.+++.....+ .+..+++ |+.+++.-..
T Consensus 316 ~l~~ip--~~~~l~~l~~L~~L~L~~N~l~g----~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~ 388 (636)
T 4eco_A 316 NLKTFP--VETSLQKMKKLGMLECLYNQLEG----KLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNK 388 (636)
T ss_dssp CCSSCC--CHHHHTTCTTCCEEECCSCCCEE----ECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSC
T ss_pred cCCccC--chhhhccCCCCCEEeCcCCcCcc----chh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCc
Confidence 654333 2 11234678888887742110 011 112356777777766543211 1344555 6665553211
Q ss_pred CccccCCCccchHHhh--cCCCceEEEEecchhhhccccccCCCC-------CCCcccEEEEEEcCCChhHHHHHHhcCC
Q 047191 258 GEWSRVDPNRSIQLLQ--QLNNTTSLTVSYGVLCALDHAYHKWFP-------ALSYLQHLEVAVGAIGWAVLPVILSSSV 328 (341)
Q Consensus 258 ~~~~~~~~~~~~~~l~--~~~~l~~L~l~~~~~~~~~~~~~~~~~-------~f~~L~~L~l~~~~~~~~~l~~ll~~cp 328 (341)
... + ...+. .+++++.|.++.+.+.... ...++ ..++|++|++..+... ..-..+.+.+|
T Consensus 389 l~~--l-----p~~~~~~~l~~L~~L~Ls~N~l~~~~---p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~ 457 (636)
T 4eco_A 389 LKY--I-----PNIFDAKSVSVMSAIDFSYNEIGSVD---GKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGS 457 (636)
T ss_dssp CSS--C-----CSCCCTTCSSCEEEEECCSSCTTTTT---TCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTC
T ss_pred Ccc--c-----chhhhhcccCccCEEECcCCcCCCcc---hhhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCC
Confidence 110 0 01111 2336667777665443210 00111 3345666666655111 11123445566
Q ss_pred CCCcEEEee
Q 047191 329 HLQSLVLRK 337 (341)
Q Consensus 329 ~L~~L~l~~ 337 (341)
+|+.|++.+
T Consensus 458 ~L~~L~Ls~ 466 (636)
T 4eco_A 458 PLSSINLMG 466 (636)
T ss_dssp CCSEEECCS
T ss_pred CCCEEECCC
Confidence 666666554
No 79
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=97.77 E-value=2.6e-06 Score=86.11 Aligned_cols=63 Identities=13% Similarity=0.065 Sum_probs=39.8
Q ss_pred cc--cccccCcceEEEEeeeeeeccCCCcccCCchhhhhhhccC--CCcchHHHHHhcCCc-cceeEEeeeec
Q 047191 117 QI--ELYASPSVEVLKLMSDFLLKVPAGGTCFPNVKILTMQLES--PDNILTEKLFCSCPS-LEELSIQAYLN 184 (341)
Q Consensus 117 p~--~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~~~L~~--~~~~~l~~ll~~cp~-Le~L~L~~c~~ 184 (341)
|. .+..+++|+.|+| ++..+...|....+++|+.| .|.+ ++ .+..-+.+++. |+.|.|.++.-
T Consensus 564 p~~~~l~~L~~L~~L~L-s~N~l~~lp~~~~L~~L~~L--~Ls~N~l~--~lp~~l~~l~~~L~~L~Ls~N~L 631 (876)
T 4ecn_A 564 PASASLQKMVKLGLLDC-VHNKVRHLEAFGTNVKLTDL--KLDYNQIE--EIPEDFCAFTDQVEGLGFSHNKL 631 (876)
T ss_dssp CCHHHHTTCTTCCEEEC-TTSCCCBCCCCCTTSEESEE--ECCSSCCS--CCCTTSCEECTTCCEEECCSSCC
T ss_pred CChhhhhcCCCCCEEEC-CCCCcccchhhcCCCcceEE--ECcCCccc--cchHHHhhccccCCEEECcCCCC
Confidence 55 5666777888887 65444443355567777777 7777 43 33333666777 88887777643
No 80
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=97.76 E-value=5.6e-06 Score=72.06 Aligned_cols=155 Identities=16% Similarity=0.088 Sum_probs=101.0
Q ss_pred cccccCcceEEEEeeeeeeccCCCcccCCchhhhhhhccC--CCcchHHHHHhcCCccceeEEeeeecCCCCceeEEEeC
Q 047191 119 ELYASPSVEVLKLMSDFLLKVPAGGTCFPNVKILTMQLES--PDNILTEKLFCSCPSLEELSIQAYLNDEGPTTKFVISS 196 (341)
Q Consensus 119 ~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~~~L~~--~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~l~i~~ 196 (341)
.+..+++|++|+| +++.+...+....+++|++| .|.+ ++. .....+.+++.|+.|.+.++.-.+... ..--..
T Consensus 58 ~l~~l~~L~~L~l-~~n~l~~~~~l~~l~~L~~L--~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l 132 (272)
T 3rfs_A 58 GIQYLPNVRYLAL-GGNKLHDISALKELTNLTYL--ILTGNQLQS-LPNGVFDKLTNLKELVLVENQLQSLPD-GVFDKL 132 (272)
T ss_dssp TGGGCTTCCEEEC-TTSCCCCCGGGTTCTTCCEE--ECTTSCCCC-CCTTTTTTCTTCCEEECTTSCCCCCCT-TTTTTC
T ss_pred ccccCCCCcEEEC-CCCCCCCchhhcCCCCCCEE--ECCCCccCc-cChhHhcCCcCCCEEECCCCcCCccCH-HHhccC
Confidence 4556899999999 77666655456678999999 9988 442 222336789999999999985432220 001134
Q ss_pred CCcceEEEeeecCccccccCceeEEEecCCceEEEeeccccCcee---ecCCCCeeEEEEEEEeCccccCCCccchHHhh
Q 047191 197 STLKQCTLWVETEGEMFTQAEYKVRITAPSLERLHIMSDIFGKFV---VHDLNSLTDVILDIVYGEWSRVDPNRSIQLLQ 273 (341)
Q Consensus 197 ~sL~~L~i~~c~~~~~~~~~~~~~~~~~p~L~~l~~~~~~~~~~~---~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~l~ 273 (341)
++|+.|.+.+|.-... .....-..++|++|.+.+....... +..+++|+.+++.-..... .. ...+.
T Consensus 133 ~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~--~~----~~~~~ 202 (272)
T 3rfs_A 133 TNLTYLNLAHNQLQSL----PKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKS--VP----DGVFD 202 (272)
T ss_dssp TTCCEEECCSSCCCCC----CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC--CC----TTTTT
T ss_pred CCCCEEECCCCccCcc----CHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCc--cC----HHHHh
Confidence 7899999988521111 0001124689999999987654332 5678899988774321111 00 44567
Q ss_pred cCCCceEEEEecchh
Q 047191 274 QLNNTTSLTVSYGVL 288 (341)
Q Consensus 274 ~~~~l~~L~l~~~~~ 288 (341)
.+++++.|.++.+.+
T Consensus 203 ~l~~L~~L~l~~N~~ 217 (272)
T 3rfs_A 203 RLTSLQYIWLHDNPW 217 (272)
T ss_dssp TCTTCCEEECCSSCB
T ss_pred CCcCCCEEEccCCCc
Confidence 889999999988754
No 81
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=97.72 E-value=2.1e-06 Score=78.05 Aligned_cols=182 Identities=13% Similarity=0.127 Sum_probs=91.5
Q ss_pred CcceEEEEeeeeeeccCCC------cccC-CchhhhhhhccC--CCcchH---HHHHhc-CCccceeEEeeeecCCCCce
Q 047191 124 PSVEVLKLMSDFLLKVPAG------GTCF-PNVKILTMQLES--PDNILT---EKLFCS-CPSLEELSIQAYLNDEGPTT 190 (341)
Q Consensus 124 ~~L~~L~L~~~~~l~~~~~------~~~~-~~L~~L~~~L~~--~~~~~l---~~ll~~-cp~Le~L~L~~c~~~~~~~~ 190 (341)
++|++|+| +++.+..... ...+ ++|++| +|.+ +++... ...+.. ++.|+.|++.++.-....
T Consensus 80 ~~L~~L~L-s~n~l~~~~~~~l~~~l~~~~~~L~~L--~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~-- 154 (362)
T 3goz_A 80 ANVTSLNL-SGNFLSYKSSDELVKTLAAIPFTITVL--DLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKS-- 154 (362)
T ss_dssp TTCCEEEC-CSSCGGGSCHHHHHHHHHTSCTTCCEE--ECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSC--
T ss_pred CCccEEEC-cCCcCChHHHHHHHHHHHhCCCCccEE--ECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHH--
Confidence 77888888 6666643311 1223 678888 8877 444443 333444 568888888877432111
Q ss_pred eEEE-----eC-CCcceEEEeeecCccccccCceeEEEec-CCceEEEeeccccCce-------eecC-CCCeeEEEEEE
Q 047191 191 KFVI-----SS-STLKQCTLWVETEGEMFTQAEYKVRITA-PSLERLHIMSDIFGKF-------VVHD-LNSLTDVILDI 255 (341)
Q Consensus 191 ~l~i-----~~-~sL~~L~i~~c~~~~~~~~~~~~~~~~~-p~L~~l~~~~~~~~~~-------~~~~-~~~L~~~~l~~ 255 (341)
.-.+ .. ++|+.|.+.+|.-............... ++|++|++++...... .+.. .++|+++++..
T Consensus 155 ~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~ 234 (362)
T 3goz_A 155 SDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCL 234 (362)
T ss_dssp HHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCS
T ss_pred HHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcC
Confidence 0011 12 3788888877421110000000011123 4788888876654331 1222 34677766643
Q ss_pred EeCccccCCCccc-hHHhhcCCCceEEEEecchhhhccc----cccCCCCCCCcccEEEEEEc
Q 047191 256 VYGEWSRVDPNRS-IQLLQQLNNTTSLTVSYGVLCALDH----AYHKWFPALSYLQHLEVAVG 313 (341)
Q Consensus 256 ~~~~~~~~~~~~~-~~~l~~~~~l~~L~l~~~~~~~~~~----~~~~~~~~f~~L~~L~l~~~ 313 (341)
........ .. ..++..+++++.|.++.+.+..+.. .-...++.+++|+.|++..+
T Consensus 235 N~l~~~~~---~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N 294 (362)
T 3goz_A 235 NCLHGPSL---ENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGK 294 (362)
T ss_dssp SCCCCCCH---HHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSC
T ss_pred CCCCcHHH---HHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCC
Confidence 21111000 01 3445677788888887765332211 11223456667777777665
No 82
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=97.72 E-value=6.1e-06 Score=71.86 Aligned_cols=82 Identities=20% Similarity=0.219 Sum_probs=39.5
Q ss_pred cccccCcceEEEEeeeeeecc-CC-CcccCCchhhhhhhccC--CCcchHHHHHhcCCccceeEEeeeecCCCCceeEEE
Q 047191 119 ELYASPSVEVLKLMSDFLLKV-PA-GGTCFPNVKILTMQLES--PDNILTEKLFCSCPSLEELSIQAYLNDEGPTTKFVI 194 (341)
Q Consensus 119 ~~~~~~~L~~L~L~~~~~l~~-~~-~~~~~~~L~~L~~~L~~--~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~l~i 194 (341)
.+..+++|++|+| +++.+.. ++ ...++++|++| +|.+ ++.... ..+.++++|+.|.+.++.-.... ...+
T Consensus 47 ~~~~l~~L~~L~l-~~n~l~~~~~~~~~~l~~L~~L--~L~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~--~~~~ 120 (276)
T 2z62_A 47 SFFSFPELQVLDL-SRCEIQTIEDGAYQSLSHLSTL--ILTGNPIQSLAL-GAFSGLSSLQKLVAVETNLASLE--NFPI 120 (276)
T ss_dssp TTTTCTTCSEEEC-TTCCCCEECTTTTTTCTTCCEE--ECTTCCCCEECT-TTTTTCTTCCEEECTTSCCCCST--TCCC
T ss_pred HhccccCCcEEEC-CCCcCCccCHHHccCCcCCCEE--ECCCCccCccCh-hhhcCCccccEEECCCCCccccC--chhc
Confidence 3444566666666 5444322 21 23445666666 6655 322211 22455666666666665432222 1111
Q ss_pred -eCCCcceEEEee
Q 047191 195 -SSSTLKQCTLWV 206 (341)
Q Consensus 195 -~~~sL~~L~i~~ 206 (341)
..++|+.|.+.+
T Consensus 121 ~~l~~L~~L~l~~ 133 (276)
T 2z62_A 121 GHLKTLKELNVAH 133 (276)
T ss_dssp TTCTTCCEEECCS
T ss_pred ccCCCCCEEECcC
Confidence 234566666665
No 83
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=97.71 E-value=1e-06 Score=79.05 Aligned_cols=56 Identities=21% Similarity=0.209 Sum_probs=26.4
Q ss_pred CcceEEEEeeeeeecc-CC-CcccCCchhhhhhhccC--CCcchHHHHHhcCCccceeEEeeee
Q 047191 124 PSVEVLKLMSDFLLKV-PA-GGTCFPNVKILTMQLES--PDNILTEKLFCSCPSLEELSIQAYL 183 (341)
Q Consensus 124 ~~L~~L~L~~~~~l~~-~~-~~~~~~~L~~L~~~L~~--~~~~~l~~ll~~cp~Le~L~L~~c~ 183 (341)
+.|+.|+| .+..+.. ++ ...++++|++| .|.+ ++.-. ...+.++++|+.|++.++.
T Consensus 54 ~~l~~L~l-~~n~i~~~~~~~~~~l~~L~~L--~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~ 113 (332)
T 2ft3_A 54 PDTTLLDL-QNNDISELRKDDFKGLQHLYAL--VLVNNKISKIH-EKAFSPLRKLQKLYISKNH 113 (332)
T ss_dssp TTCCEEEC-CSSCCCEECTTTTTTCTTCCEE--ECCSSCCCEEC-GGGSTTCTTCCEEECCSSC
T ss_pred CCCeEEEC-CCCcCCccCHhHhhCCCCCcEE--ECCCCccCccC-HhHhhCcCCCCEEECCCCc
Confidence 45666666 4433321 11 23445666666 6555 32211 1124556666666665553
No 84
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=97.70 E-value=1.2e-05 Score=68.36 Aligned_cols=188 Identities=16% Similarity=0.112 Sum_probs=98.1
Q ss_pred cceEEEEeeeeeecc-CC-CcccCCchhhhhhhccC-CCcchH-HHHHhcCCccceeEEeeeecCC-CCceeEEEeCCCc
Q 047191 125 SVEVLKLMSDFLLKV-PA-GGTCFPNVKILTMQLES-PDNILT-EKLFCSCPSLEELSIQAYLNDE-GPTTKFVISSSTL 199 (341)
Q Consensus 125 ~L~~L~L~~~~~l~~-~~-~~~~~~~L~~L~~~L~~-~~~~~l-~~ll~~cp~Le~L~L~~c~~~~-~~~~~l~i~~~sL 199 (341)
+|+.|++ ++..+.. ++ ...++++|++| +|.+ -.-..+ ...+.++++|+.|.+.+|.... +. +...-..++|
T Consensus 32 ~l~~L~l-~~n~l~~i~~~~~~~l~~L~~L--~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~-~~~f~~l~~L 107 (239)
T 2xwt_C 32 STQTLKL-IETHLRTIPSHAFSNLPNISRI--YVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYID-PDALKELPLL 107 (239)
T ss_dssp TCCEEEE-ESCCCSEECTTTTTTCTTCCEE--EEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEEC-TTSEECCTTC
T ss_pred cccEEEE-eCCcceEECHHHccCCCCCcEE--eCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcC-HHHhCCCCCC
Confidence 6788888 6555533 22 24467788888 7766 101111 1235678888888888753321 00 0112245678
Q ss_pred ceEEEeeecCccccccCceeEEEecCCce---EEEeecc-ccCce---eecCCCCee-EEEEEEEeCccccCCCccchHH
Q 047191 200 KQCTLWVETEGEMFTQAEYKVRITAPSLE---RLHIMSD-IFGKF---VVHDLNSLT-DVILDIVYGEWSRVDPNRSIQL 271 (341)
Q Consensus 200 ~~L~i~~c~~~~~~~~~~~~~~~~~p~L~---~l~~~~~-~~~~~---~~~~~~~L~-~~~l~~~~~~~~~~~~~~~~~~ 271 (341)
+.|.+.++.-... .. ....++|+ +|.+.+. ....+ .+..+++|+ .+++.-.... .+. ...
T Consensus 108 ~~L~l~~n~l~~l-----p~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~--~i~----~~~ 175 (239)
T 2xwt_C 108 KFLGIFNTGLKMF-----PD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT--SVQ----GYA 175 (239)
T ss_dssp CEEEEEEECCCSC-----CC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC--EEC----TTT
T ss_pred CEEeCCCCCCccc-----cc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc--ccC----Hhh
Confidence 8888887422111 11 11345555 7777765 33322 245666777 6555321110 000 222
Q ss_pred hhcCCCceEEEEecch-hhhccccccCCCCCC-CcccEEEEEEcC-CChhHHHHHHhcCCCCCcEEEee
Q 047191 272 LQQLNNTTSLTVSYGV-LCALDHAYHKWFPAL-SYLQHLEVAVGA-IGWAVLPVILSSSVHLQSLVLRK 337 (341)
Q Consensus 272 l~~~~~l~~L~l~~~~-~~~~~~~~~~~~~~f-~~L~~L~l~~~~-~~~~~l~~ll~~cp~L~~L~l~~ 337 (341)
+.. ++++.|.++.+. +..+. ...+..+ ++|++|++..+. ..... ..+++|+.|.+.+
T Consensus 176 ~~~-~~L~~L~L~~n~~l~~i~---~~~~~~l~~~L~~L~l~~N~l~~l~~-----~~~~~L~~L~l~~ 235 (239)
T 2xwt_C 176 FNG-TKLDAVYLNKNKYLTVID---KDAFGGVYSGPSLLDVSQTSVTALPS-----KGLEHLKELIARN 235 (239)
T ss_dssp TTT-CEEEEEECTTCTTCCEEC---TTTTTTCSBCCSEEECTTCCCCCCCC-----TTCTTCSEEECTT
T ss_pred cCC-CCCCEEEcCCCCCcccCC---HHHhhccccCCcEEECCCCccccCCh-----hHhccCceeeccC
Confidence 333 678888887763 44221 1123345 678888887761 11111 1567888887755
No 85
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=97.69 E-value=2.9e-05 Score=74.78 Aligned_cols=39 Identities=13% Similarity=0.095 Sum_probs=20.9
Q ss_pred CCCcccEEEEEEcCCCh---hHHHHHHhcCCCCCcEEEeeeee
Q 047191 301 ALSYLQHLEVAVGAIGW---AVLPVILSSSVHLQSLVLRKVII 340 (341)
Q Consensus 301 ~f~~L~~L~l~~~~~~~---~~l~~ll~~cp~L~~L~l~~~~~ 340 (341)
..++|+.|.+....... ..+...+. .++|+.|++.+-.+
T Consensus 247 ~l~~L~~L~L~~~~l~~~~~~~~~~~~~-~~~L~~L~l~~n~l 288 (562)
T 3a79_B 247 RGPTLLNVTLQHIETTWKCSVKLFQFFW-PRPVEYLNIYNLTI 288 (562)
T ss_dssp SCSSCEEEEEEEEEECHHHHHHHHHHHT-TSSEEEEEEEEEEE
T ss_pred ccCcceEEEecCCcCcHHHHHHHHHhhh-cccccEEEEeccEe
Confidence 34566677766652222 22233222 35788888777554
No 86
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=97.69 E-value=2.9e-06 Score=83.12 Aligned_cols=62 Identities=10% Similarity=0.002 Sum_probs=35.3
Q ss_pred cccccccCcceEEEEeeeee-ec---cCCCccc------CCchhhhhhhccC--CCcchHHH--HHhcCCccceeEEeee
Q 047191 117 QIELYASPSVEVLKLMSDFL-LK---VPAGGTC------FPNVKILTMQLES--PDNILTEK--LFCSCPSLEELSIQAY 182 (341)
Q Consensus 117 p~~~~~~~~L~~L~L~~~~~-l~---~~~~~~~------~~~L~~L~~~L~~--~~~~~l~~--ll~~cp~Le~L~L~~c 182 (341)
|..+...++|+.|+| +++. +. .|..... +++|+.| +|.+ ++ .+.. .+.++++|+.|.+.++
T Consensus 266 p~~l~~l~~L~~L~L-s~n~~l~~~~lp~~~~~L~~~~~l~~L~~L--~L~~n~l~--~ip~~~~l~~l~~L~~L~L~~N 340 (636)
T 4eco_A 266 PTFLKALPEMQLINV-ACNRGISGEQLKDDWQALADAPVGEKIQII--YIGYNNLK--TFPVETSLQKMKKLGMLECLYN 340 (636)
T ss_dssp CTTTTTCSSCCEEEC-TTCTTSCHHHHHHHHHHHHHSGGGGTCCEE--ECCSSCCS--SCCCHHHHTTCTTCCEEECCSC
T ss_pred hHHHhcCCCCCEEEC-cCCCCCccccchHHHHhhhccccCCCCCEE--ECCCCcCC--ccCchhhhccCCCCCEEeCcCC
Confidence 666666777777777 5443 32 1211222 3677777 7766 44 3322 4666777777777665
Q ss_pred e
Q 047191 183 L 183 (341)
Q Consensus 183 ~ 183 (341)
.
T Consensus 341 ~ 341 (636)
T 4eco_A 341 Q 341 (636)
T ss_dssp C
T ss_pred c
Confidence 3
No 87
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=97.67 E-value=2.6e-06 Score=83.94 Aligned_cols=38 Identities=21% Similarity=0.222 Sum_probs=22.6
Q ss_pred CCCCcccEEEEEEcCCChhHHHHHHhcCCCCCcEEEeee
Q 047191 300 PALSYLQHLEVAVGAIGWAVLPVILSSSVHLQSLVLRKV 338 (341)
Q Consensus 300 ~~f~~L~~L~l~~~~~~~~~l~~ll~~cp~L~~L~l~~~ 338 (341)
..+++|+.|++..+... ......+..+++|+.|++.+-
T Consensus 477 ~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~Ls~N 514 (680)
T 1ziw_A 477 QPLRNLTILDLSNNNIA-NINDDMLEGLEKLEILDLQHN 514 (680)
T ss_dssp TTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSS
T ss_pred ccCCCCCEEECCCCCCC-cCChhhhccccccCEEeCCCC
Confidence 35667778877765111 011123567788888887653
No 88
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=97.65 E-value=4.7e-06 Score=82.11 Aligned_cols=56 Identities=13% Similarity=0.188 Sum_probs=30.4
Q ss_pred CcceEEEEeeeeeec-cCC-CcccCCchhhhhhhccC--CCcchHHHHHhcCCccceeEEeee
Q 047191 124 PSVEVLKLMSDFLLK-VPA-GGTCFPNVKILTMQLES--PDNILTEKLFCSCPSLEELSIQAY 182 (341)
Q Consensus 124 ~~L~~L~L~~~~~l~-~~~-~~~~~~~L~~L~~~L~~--~~~~~l~~ll~~cp~Le~L~L~~c 182 (341)
++|+.|++ +++.+. ..+ ...++++|+.| +|.+ ++...-...+.+++.|+.|.+.++
T Consensus 381 ~~L~~L~L-~~n~l~~~~~~~~~~l~~L~~L--~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n 440 (680)
T 1ziw_A 381 SPLHILNL-TKNKISKIESDAFSWLGHLEVL--DLGLNEIGQELTGQEWRGLENIFEIYLSYN 440 (680)
T ss_dssp SCCCEEEC-TTSCCCEECTTTTTTCTTCCEE--ECCSSCCEEECCSGGGTTCTTCCEEECCSC
T ss_pred CcCceEEC-CCCCCCeEChhhhhCCCCCCEE--eCCCCcCccccCcccccCcccccEEecCCC
Confidence 56777777 544442 221 23456677777 6666 332222233456677777776665
No 89
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=97.62 E-value=3.6e-05 Score=75.01 Aligned_cols=56 Identities=23% Similarity=0.110 Sum_probs=32.8
Q ss_pred cCCCceEEEEecchhhhccccccCCCC-CCCcccEEEEEEcCCChhHHHHHHhcCCCCCcEEEeeee
Q 047191 274 QLNNTTSLTVSYGVLCALDHAYHKWFP-ALSYLQHLEVAVGAIGWAVLPVILSSSVHLQSLVLRKVI 339 (341)
Q Consensus 274 ~~~~l~~L~l~~~~~~~~~~~~~~~~~-~f~~L~~L~l~~~~~~~~~l~~ll~~cp~L~~L~l~~~~ 339 (341)
.+++++.|.++.+.+.. +| .+++|+.|++..+... .+..-+..+|+|+.|.+.+-.
T Consensus 239 ~l~~L~~L~Ls~N~L~~--------lp~~~~~L~~L~Ls~N~L~--~lp~~l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 239 LPSELKELMVSGNRLTS--------LPMLPSGLLSLSVYRNQLT--RLPESLIHLSSETTVNLEGNP 295 (622)
T ss_dssp CCTTCCEEECCSSCCSC--------CCCCCTTCCEEECCSSCCC--SCCGGGGGSCTTCEEECCSCC
T ss_pred CCCcCcEEECCCCCCCc--------CCcccccCcEEeCCCCCCC--cCCHHHhhccccCEEEecCCC
Confidence 34555555555443321 12 4567888888776222 223347788999999887643
No 90
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=97.62 E-value=2.7e-05 Score=67.62 Aligned_cols=155 Identities=17% Similarity=0.125 Sum_probs=98.4
Q ss_pred cccccCcceEEEEeeeeeeccCC-C-cccCCchhhhhhhccC--CCcchHHHHHhcCCccceeEEeeeecCCCCceeEEE
Q 047191 119 ELYASPSVEVLKLMSDFLLKVPA-G-GTCFPNVKILTMQLES--PDNILTEKLFCSCPSLEELSIQAYLNDEGPTTKFVI 194 (341)
Q Consensus 119 ~~~~~~~L~~L~L~~~~~l~~~~-~-~~~~~~L~~L~~~L~~--~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~l~i 194 (341)
.+..+++|++|+| ++..+...+ . ...+++|++| .|.+ ++.-. ...+.++++|+.|.+.++.-..... ..--
T Consensus 56 ~~~~l~~L~~L~l-~~n~l~~i~~~~~~~l~~L~~L--~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~ 130 (270)
T 2o6q_A 56 AFHRLTKLRLLYL-NDNKLQTLPAGIFKELKNLETL--WVTDNKLQALP-IGVFDQLVNLAELRLDRNQLKSLPP-RVFD 130 (270)
T ss_dssp SSSSCTTCCEEEC-CSSCCSCCCTTTTSSCTTCCEE--ECCSSCCCCCC-TTTTTTCSSCCEEECCSSCCCCCCT-TTTT
T ss_pred HhcCCCCCCEEEC-CCCccCeeChhhhcCCCCCCEE--ECCCCcCCcCC-HhHcccccCCCEEECCCCccCeeCH-HHhC
Confidence 4566899999999 766664432 2 3568999999 9987 43321 2346789999999999875432220 0011
Q ss_pred eCCCcceEEEeeecCccccccCceeEEEecCCceEEEeeccccCce---eecCCCCeeEEEEEEEeCccccCCCccchHH
Q 047191 195 SSSTLKQCTLWVETEGEMFTQAEYKVRITAPSLERLHIMSDIFGKF---VVHDLNSLTDVILDIVYGEWSRVDPNRSIQL 271 (341)
Q Consensus 195 ~~~sL~~L~i~~c~~~~~~~~~~~~~~~~~p~L~~l~~~~~~~~~~---~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~ 271 (341)
..++|+.|.+..+.-... .....-..++|++|.+.+.....+ .+..+++|+.+++.-..... +. ...
T Consensus 131 ~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~--~~----~~~ 200 (270)
T 2o6q_A 131 SLTKLTYLSLGYNELQSL----PKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKR--VP----EGA 200 (270)
T ss_dssp TCTTCCEEECCSSCCCCC----CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSC--CC----TTT
T ss_pred cCcCCCEEECCCCcCCcc----CHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCc--CC----HHH
Confidence 347899999988421111 000011368999999988755433 25677889888774321111 11 445
Q ss_pred hhcCCCceEEEEecchh
Q 047191 272 LQQLNNTTSLTVSYGVL 288 (341)
Q Consensus 272 l~~~~~l~~L~l~~~~~ 288 (341)
+..+++++.|.++.+.+
T Consensus 201 ~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 201 FDSLEKLKMLQLQENPW 217 (270)
T ss_dssp TTTCTTCCEEECCSSCB
T ss_pred hccccCCCEEEecCCCe
Confidence 67889999999988764
No 91
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=97.60 E-value=4.5e-06 Score=74.25 Aligned_cols=196 Identities=15% Similarity=0.039 Sum_probs=117.2
Q ss_pred ccCcceEEEEeeeeeec-cCCC-c--ccCCchhhhhhhccC--CCc--chHHHHHh-cCCccceeEEeeeecCCCCceeE
Q 047191 122 ASPSVEVLKLMSDFLLK-VPAG-G--TCFPNVKILTMQLES--PDN--ILTEKLFC-SCPSLEELSIQAYLNDEGPTTKF 192 (341)
Q Consensus 122 ~~~~L~~L~L~~~~~l~-~~~~-~--~~~~~L~~L~~~L~~--~~~--~~l~~ll~-~cp~Le~L~L~~c~~~~~~~~~l 192 (341)
..++|++|+| +++.+. ..|. . ..+++|+.| +|.+ ++. ..+..+-. ..++|+.|.+.++.-.+.....+
T Consensus 93 ~l~~L~~L~L-~~n~l~~~~~~~~~~~~l~~L~~L--~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~ 169 (312)
T 1wwl_A 93 GISGLQELTL-ENLEVTGTAPPPLLEATGPDLNIL--NLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQV 169 (312)
T ss_dssp TTSCCCEEEE-EEEBCBSCCCCCSSSCCSCCCSEE--EEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTC
T ss_pred CcCCccEEEc-cCCcccchhHHHHHHhcCCCccEE--EccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHh
Confidence 4678999999 777664 2322 2 578999999 9988 433 33444322 24999999999985432220011
Q ss_pred EEeCCCcceEEEeeecCccccccCceeE-EEecCCceEEEeeccccCce------eecCCCCeeEEEEEEEeCccccCCC
Q 047191 193 VISSSTLKQCTLWVETEGEMFTQAEYKV-RITAPSLERLHIMSDIFGKF------VVHDLNSLTDVILDIVYGEWSRVDP 265 (341)
Q Consensus 193 ~i~~~sL~~L~i~~c~~~~~~~~~~~~~-~~~~p~L~~l~~~~~~~~~~------~~~~~~~L~~~~l~~~~~~~~~~~~ 265 (341)
-..++|+.|.+.++.-.+.. .....+ ....++|++|.+.+...... .+..+++|+.+++.-.......
T Consensus 170 -~~l~~L~~L~Ls~N~l~~~~-~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~--- 244 (312)
T 1wwl_A 170 -RVFPALSTLDLSDNPELGER-GLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAA--- 244 (312)
T ss_dssp -CCCSSCCEEECCSCTTCHHH-HHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSC---
T ss_pred -ccCCCCCEEECCCCCcCcch-HHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCccc---
Confidence 14578999999884211100 000011 12468999999987765421 1346688888776422111100
Q ss_pred ccchHHhhcCCCceEEEEecchhhhccccccCCCCCCCcccEEEEEEcC-CChhHHHHHHhcCCCCCcEEEee
Q 047191 266 NRSIQLLQQLNNTTSLTVSYGVLCALDHAYHKWFPALSYLQHLEVAVGA-IGWAVLPVILSSSVHLQSLVLRK 337 (341)
Q Consensus 266 ~~~~~~l~~~~~l~~L~l~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~-~~~~~l~~ll~~cp~L~~L~l~~ 337 (341)
.......+++++.|.++.+.+..+ + ..+ +++|++|++..+. .+.. . +..+|+|+.|++.+
T Consensus 245 --~~~~~~~l~~L~~L~Ls~N~l~~i--p--~~~--~~~L~~L~Ls~N~l~~~p---~-~~~l~~L~~L~L~~ 305 (312)
T 1wwl_A 245 --GAPSCDWPSQLNSLNLSFTGLKQV--P--KGL--PAKLSVLDLSYNRLDRNP---S-PDELPQVGNLSLKG 305 (312)
T ss_dssp --CCSCCCCCTTCCEEECTTSCCSSC--C--SSC--CSEEEEEECCSSCCCSCC---C-TTTSCEEEEEECTT
T ss_pred --chhhhhhcCCCCEEECCCCccChh--h--hhc--cCCceEEECCCCCCCCCh---h-HhhCCCCCEEeccC
Confidence 012334568999999988766522 1 112 2789999998872 2222 2 67789999988865
No 92
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=97.59 E-value=5.2e-05 Score=66.66 Aligned_cols=146 Identities=16% Similarity=0.091 Sum_probs=92.3
Q ss_pred ccccCcceEEEEeeeeeeccCCCcccCCchhhhhhhccC--CCcchHHHHHhcCCccceeEEeeeecCCCCceeEEEeCC
Q 047191 120 LYASPSVEVLKLMSDFLLKVPAGGTCFPNVKILTMQLES--PDNILTEKLFCSCPSLEELSIQAYLNDEGPTTKFVISSS 197 (341)
Q Consensus 120 ~~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~~~L~~--~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~l~i~~~ 197 (341)
+..+++|+.|+| +++.+...+....+++|+.| .|.+ +++ +.. +..++.|+.|++.++.-.... .+ ...+
T Consensus 64 ~~~l~~L~~L~L-~~n~l~~~~~l~~l~~L~~L--~l~~n~l~~--~~~-l~~l~~L~~L~L~~n~i~~~~--~l-~~l~ 134 (291)
T 1h6t_A 64 IQYLPNVTKLFL-NGNKLTDIKPLANLKNLGWL--FLDENKVKD--LSS-LKDLKKLKSLSLEHNGISDIN--GL-VHLP 134 (291)
T ss_dssp GGGCTTCCEEEC-CSSCCCCCGGGTTCTTCCEE--ECCSSCCCC--GGG-GTTCTTCCEEECTTSCCCCCG--GG-GGCT
T ss_pred HhcCCCCCEEEc-cCCccCCCcccccCCCCCEE--ECCCCcCCC--Chh-hccCCCCCEEECCCCcCCCCh--hh-cCCC
Confidence 455789999999 77666554346678999999 9988 444 222 788999999999988544322 11 1347
Q ss_pred CcceEEEeeecCccccccCceeEEEecCCceEEEeeccccCce-eecCCCCeeEEEEEEEeCccccCCCccchHHhhcCC
Q 047191 198 TLKQCTLWVETEGEMFTQAEYKVRITAPSLERLHIMSDIFGKF-VVHDLNSLTDVILDIVYGEWSRVDPNRSIQLLQQLN 276 (341)
Q Consensus 198 sL~~L~i~~c~~~~~~~~~~~~~~~~~p~L~~l~~~~~~~~~~-~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~l~~~~ 276 (341)
+|+.|.+.+|.-... ...-..++|+.|.+++...... .+..+++|+.+++.-..... ..-+..++
T Consensus 135 ~L~~L~l~~n~l~~~------~~l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~L~~N~i~~--------l~~l~~l~ 200 (291)
T 1h6t_A 135 QLESLYLGNNKITDI------TVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISD--------LRALAGLK 200 (291)
T ss_dssp TCCEEECCSSCCCCC------GGGGGCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCB--------CGGGTTCT
T ss_pred CCCEEEccCCcCCcc------hhhccCCCCCEEEccCCccccchhhcCCCccCEEECCCCcCCC--------ChhhccCC
Confidence 899999988421111 1112468999999987654322 25666777766653221111 12256677
Q ss_pred CceEEEEecchh
Q 047191 277 NTTSLTVSYGVL 288 (341)
Q Consensus 277 ~l~~L~l~~~~~ 288 (341)
+++.|.++.+.+
T Consensus 201 ~L~~L~l~~n~i 212 (291)
T 1h6t_A 201 NLDVLELFSQEC 212 (291)
T ss_dssp TCSEEEEEEEEE
T ss_pred CCCEEECcCCcc
Confidence 777777776543
No 93
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=97.55 E-value=4.3e-05 Score=70.89 Aligned_cols=38 Identities=24% Similarity=0.495 Sum_probs=35.4
Q ss_pred CCCccCCCChHHHHHHHcCCChhhhhhhhccccchHHh
Q 047191 3 PAYRINALPDSVLCHILSYLPTKNVVATSILARRWKLV 40 (341)
Q Consensus 3 ~~d~is~LPd~iL~~Ils~Lp~~~~~~~s~vskrWr~l 40 (341)
..|.++.||+|++.+||+||+.+++++++.|||+|+.+
T Consensus 15 ~~d~~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~ 52 (445)
T 2ovr_B 15 QRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRIL 52 (445)
T ss_dssp CCSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHH
T ss_pred cCChhHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhh
Confidence 46889999999999999999999999999999999864
No 94
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=97.54 E-value=1.2e-06 Score=82.00 Aligned_cols=67 Identities=21% Similarity=0.174 Sum_probs=39.6
Q ss_pred cCCCceEEEEecchhhhccccc-cCCCCCCCcccEEEEEEcCCChhHHHHHHh----cCCCCCcEEEeeeee
Q 047191 274 QLNNTTSLTVSYGVLCALDHAY-HKWFPALSYLQHLEVAVGAIGWAVLPVILS----SSVHLQSLVLRKVII 340 (341)
Q Consensus 274 ~~~~l~~L~l~~~~~~~~~~~~-~~~~~~f~~L~~L~l~~~~~~~~~l~~ll~----~cp~L~~L~l~~~~~ 340 (341)
..++++.|.++.+.+....... ...+..+++|++|++..+..+......+.+ ..++|+.|.+.+..|
T Consensus 140 ~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l 211 (461)
T 1z7x_W 140 PQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGV 211 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCC
T ss_pred CCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCC
Confidence 4567999999876543221100 111224578999999887443333333332 457999999876543
No 95
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=97.50 E-value=1.3e-05 Score=71.07 Aligned_cols=198 Identities=13% Similarity=-0.038 Sum_probs=115.2
Q ss_pred cCcceEEEEeeeeeec-cCCC-c--ccCCchhhhhhhccC--CCcc--hHH-HHHhcCCccceeEEeeeecCCCCceeEE
Q 047191 123 SPSVEVLKLMSDFLLK-VPAG-G--TCFPNVKILTMQLES--PDNI--LTE-KLFCSCPSLEELSIQAYLNDEGPTTKFV 193 (341)
Q Consensus 123 ~~~L~~L~L~~~~~l~-~~~~-~--~~~~~L~~L~~~L~~--~~~~--~l~-~ll~~cp~Le~L~L~~c~~~~~~~~~l~ 193 (341)
.++|++|++ .++.+. ..+. . ..+++|++| .|.+ ++.. .+. .-+..++.|+.|++.++.-..... ..-
T Consensus 90 ~~~L~~L~l-~~n~l~~~~~~~~~~~~~~~L~~L--~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~-~~~ 165 (310)
T 4glp_A 90 YSRLKELTL-EDLKITGTMPPLPLEATGLALSSL--RLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSC-EQV 165 (310)
T ss_dssp HSCCCEEEE-ESCCCBSCCCCCSSSCCCBCCSSC--EEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCT-TSC
T ss_pred cCceeEEEe-eCCEeccchhhhhhhccCCCCCEE--EeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhH-HHh
Confidence 345889999 766653 2322 2 668999999 9988 4432 121 224589999999999986532220 111
Q ss_pred EeCCCcceEEEeeecCccccccCceeEEEecCCceEEEeeccccCce------eecCCCCeeEEEEEEEeCccccCCCcc
Q 047191 194 ISSSTLKQCTLWVETEGEMFTQAEYKVRITAPSLERLHIMSDIFGKF------VVHDLNSLTDVILDIVYGEWSRVDPNR 267 (341)
Q Consensus 194 i~~~sL~~L~i~~c~~~~~~~~~~~~~~~~~p~L~~l~~~~~~~~~~------~~~~~~~L~~~~l~~~~~~~~~~~~~~ 267 (341)
-..++|+.|++.++.-.+.............|+|++|.+++...... .+..+++|+++++....... ..+.
T Consensus 166 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~--~~p~- 242 (310)
T 4glp_A 166 RAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRA--TVNP- 242 (310)
T ss_dssp CCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCC--CCCS-
T ss_pred ccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCc--cchh-
Confidence 14578999999884211100000001112468899999987765422 13566888887764221111 0000
Q ss_pred chHHhhcCCCceEEEEecchhhhccccccCCCCCCCcccEEEEEEcC-CChhHHHHHHhcCCCCCcEEEee
Q 047191 268 SIQLLQQLNNTTSLTVSYGVLCALDHAYHKWFPALSYLQHLEVAVGA-IGWAVLPVILSSSVHLQSLVLRK 337 (341)
Q Consensus 268 ~~~~l~~~~~l~~L~l~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~-~~~~~l~~ll~~cp~L~~L~l~~ 337 (341)
...-+.++++++.|.++.+.+..+ + .. .+++|++|+++.+. .+... +..+|+|+.|.+.+
T Consensus 243 ~~~~~~~~~~L~~L~Ls~N~l~~l--p--~~--~~~~L~~L~Ls~N~l~~~~~----~~~l~~L~~L~L~~ 303 (310)
T 4glp_A 243 SAPRCMWSSALNSLNLSFAGLEQV--P--KG--LPAKLRVLDLSSNRLNRAPQ----PDELPEVDNLTLDG 303 (310)
T ss_dssp CCSSCCCCTTCCCEECCSSCCCSC--C--SC--CCSCCSCEECCSCCCCSCCC----TTSCCCCSCEECSS
T ss_pred hHHhccCcCcCCEEECCCCCCCch--h--hh--hcCCCCEEECCCCcCCCCch----hhhCCCccEEECcC
Confidence 011122337999999988776532 1 11 23799999998872 22221 47789999999875
No 96
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=97.49 E-value=2.2e-05 Score=72.72 Aligned_cols=38 Identities=34% Similarity=0.560 Sum_probs=35.2
Q ss_pred CCCccCCCChH----HHHHHHcCCChhhhhhhhccccchHHh
Q 047191 3 PAYRINALPDS----VLCHILSYLPTKNVVATSILARRWKLV 40 (341)
Q Consensus 3 ~~d~is~LPd~----iL~~Ils~Lp~~~~~~~s~vskrWr~l 40 (341)
..|.|+.||+| ++.+||+||+.+++++++.|||+|+++
T Consensus 7 ~~d~~~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~~ 48 (435)
T 1p22_A 7 QRDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRV 48 (435)
T ss_dssp CCCHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHH
T ss_pred hcChHHHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 46889999999 999999999999999999999999843
No 97
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=97.47 E-value=3.7e-05 Score=74.74 Aligned_cols=15 Identities=27% Similarity=0.204 Sum_probs=7.3
Q ss_pred hhcCCCceEEEEecc
Q 047191 272 LQQLNNTTSLTVSYG 286 (341)
Q Consensus 272 l~~~~~l~~L~l~~~ 286 (341)
+..+++++.|.++.+
T Consensus 193 l~~l~~L~~L~L~~N 207 (605)
T 1m9s_A 193 LAGLKNLDVLELFSQ 207 (605)
T ss_dssp GTTCTTCSEEECCSE
T ss_pred HccCCCCCEEEccCC
Confidence 344455555555443
No 98
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=97.47 E-value=1.5e-05 Score=68.37 Aligned_cols=170 Identities=15% Similarity=0.113 Sum_probs=87.2
Q ss_pred cceEEEEeeeeeeccCCCcccCCchhhhhhhccC--CCcchHHHHHhcCCccceeEEeeeecCCCCceeEEEeCCCcceE
Q 047191 125 SVEVLKLMSDFLLKVPAGGTCFPNVKILTMQLES--PDNILTEKLFCSCPSLEELSIQAYLNDEGPTTKFVISSSTLKQC 202 (341)
Q Consensus 125 ~L~~L~L~~~~~l~~~~~~~~~~~L~~L~~~L~~--~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~l~i~~~sL~~L 202 (341)
..+.+++ .+..+...|... .++|+.| .|.+ ++.-.- ..+.++++|+.|++.++.-.+... ..--..++|+.|
T Consensus 15 ~~~~l~~-~~~~l~~~p~~~-~~~l~~L--~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L 88 (251)
T 3m19_A 15 GKKEVDC-QGKSLDSVPSGI-PADTEKL--DLQSTGLATLSD-ATFRGLTKLTWLNLDYNQLQTLSA-GVFDDLTELGTL 88 (251)
T ss_dssp GGTEEEC-TTCCCSSCCSCC-CTTCCEE--ECTTSCCCCCCT-TTTTTCTTCCEEECTTSCCCCCCT-TTTTTCTTCCEE
T ss_pred CCeEEec-CCCCccccCCCC-CCCCCEE--EccCCCcCccCH-hHhcCcccCCEEECCCCcCCccCH-hHhccCCcCCEE
Confidence 3445555 444443332222 1556666 6655 222111 124456666666666653321110 000123456666
Q ss_pred EEeeecCccccccCceeEEEecCCceEEEeeccccCcee---ecCCCCeeEEEEEEEeCccccCCCccchHHhhcCCCce
Q 047191 203 TLWVETEGEMFTQAEYKVRITAPSLERLHIMSDIFGKFV---VHDLNSLTDVILDIVYGEWSRVDPNRSIQLLQQLNNTT 279 (341)
Q Consensus 203 ~i~~c~~~~~~~~~~~~~~~~~p~L~~l~~~~~~~~~~~---~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~ 279 (341)
.+.++.-... .....-..++|++|.+.+.....+. +..+++|+.+++.-..... .. ...+..+++++
T Consensus 89 ~L~~n~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~----~~~~~~l~~L~ 158 (251)
T 3m19_A 89 GLANNQLASL----PLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQS--IP----AGAFDKLTNLQ 158 (251)
T ss_dssp ECTTSCCCCC----CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC--CC----TTTTTTCTTCC
T ss_pred ECCCCccccc----ChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCc--cC----HHHcCcCcCCC
Confidence 6655211110 0000013688999999876554332 4667888887764321111 00 33566788999
Q ss_pred EEEEecchhhhccccccCCCCCCCcccEEEEEEc
Q 047191 280 SLTVSYGVLCALDHAYHKWFPALSYLQHLEVAVG 313 (341)
Q Consensus 280 ~L~l~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~ 313 (341)
.|.++.+.+..+.. ..+..+++|++|++..+
T Consensus 159 ~L~L~~N~l~~~~~---~~~~~l~~L~~L~l~~N 189 (251)
T 3m19_A 159 TLSLSTNQLQSVPH---GAFDRLGKLQTITLFGN 189 (251)
T ss_dssp EEECCSSCCSCCCT---TTTTTCTTCCEEECCSC
T ss_pred EEECCCCcCCccCH---HHHhCCCCCCEEEeeCC
Confidence 99998876553311 12336778999999887
No 99
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.40 E-value=1e-05 Score=65.25 Aligned_cols=82 Identities=7% Similarity=-0.009 Sum_probs=60.4
Q ss_pred CchhhhhhhccC--CCcchHHHHHhcCCccceeEEeeeecCCCCceeE-EEe-----CCCcceEEEeeecCccccccCce
Q 047191 147 PNVKILTMQLES--PDNILTEKLFCSCPSLEELSIQAYLNDEGPTTKF-VIS-----SSTLKQCTLWVETEGEMFTQAEY 218 (341)
Q Consensus 147 ~~L~~L~~~L~~--~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~l-~i~-----~~sL~~L~i~~c~~~~~~~~~~~ 218 (341)
.+|+.| +|.+ +++.++..+ ++|++|+.|+|.+|...... .+ .+. +++|++|++++|...++ .+..
T Consensus 61 ~~L~~L--DLs~~~Itd~GL~~L-~~~~~L~~L~L~~C~~ItD~--gL~~L~~~~~~~~~L~~L~Ls~C~~ITD--~Gl~ 133 (176)
T 3e4g_A 61 YKIQAI--DATDSCIMSIGFDHM-EGLQYVEKIRLCKCHYIEDG--CLERLSQLENLQKSMLEMEIISCGNVTD--KGII 133 (176)
T ss_dssp CCEEEE--EEESCCCCGGGGGGG-TTCSCCCEEEEESCTTCCHH--HHHHHHTCHHHHHHCCEEEEESCTTCCH--HHHH
T ss_pred ceEeEE--eCcCCCccHHHHHHh-cCCCCCCEEEeCCCCccCHH--HHHHHHhcccccCCCCEEEcCCCCcCCH--HHHH
Confidence 579999 9999 999999885 89999999999999643211 11 222 35799999999866554 3333
Q ss_pred eEEEecCCceEEEeeccc
Q 047191 219 KVRITAPSLERLHIMSDI 236 (341)
Q Consensus 219 ~~~~~~p~L~~l~~~~~~ 236 (341)
.+. .+|+|++|.++++.
T Consensus 134 ~L~-~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 134 ALH-HFRNLKYLFLSDLP 150 (176)
T ss_dssp HGG-GCTTCCEEEEESCT
T ss_pred HHh-cCCCCCEEECCCCC
Confidence 333 57999999988764
No 100
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=97.40 E-value=4.2e-05 Score=67.23 Aligned_cols=193 Identities=15% Similarity=0.037 Sum_probs=119.3
Q ss_pred cccCcceEEEEeeeeeeccCCCcccCCchhhhhhhccC--CCcchHHHHHhcCCccceeEEeeeecCCCCceeEEEeCCC
Q 047191 121 YASPSVEVLKLMSDFLLKVPAGGTCFPNVKILTMQLES--PDNILTEKLFCSCPSLEELSIQAYLNDEGPTTKFVISSST 198 (341)
Q Consensus 121 ~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~~~L~~--~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~l~i~~~s 198 (341)
...++++.+++ .+..+...|... +++++.| +|.+ ++.-.- ..+.+++.|+.|.+.++.-.... .. -..++
T Consensus 7 ~~l~~l~~l~~-~~~~l~~ip~~~-~~~l~~L--~L~~N~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~--~~-~~l~~ 78 (290)
T 1p9a_G 7 SKVASHLEVNC-DKRNLTALPPDL-PKDTTIL--HLSENLLYTFSL-ATLMPYTRLTQLNLDRAELTKLQ--VD-GTLPV 78 (290)
T ss_dssp ECSTTCCEEEC-TTSCCSSCCSCC-CTTCCEE--ECTTSCCSEEEG-GGGTTCTTCCEEECTTSCCCEEE--CC-SCCTT
T ss_pred cccCCccEEEC-CCCCCCcCCCCC-CCCCCEE--EcCCCcCCccCH-HHhhcCCCCCEEECCCCccCccc--CC-CCCCc
Confidence 44678889999 766665543322 4789999 9988 443322 33678999999999887543211 11 24578
Q ss_pred cceEEEeeecCccccccCceeEEEecCCceEEEeeccccCce---eecCCCCeeEEEEEEEeCccccCCCccchHHhhcC
Q 047191 199 LKQCTLWVETEGEMFTQAEYKVRITAPSLERLHIMSDIFGKF---VVHDLNSLTDVILDIVYGEWSRVDPNRSIQLLQQL 275 (341)
Q Consensus 199 L~~L~i~~c~~~~~~~~~~~~~~~~~p~L~~l~~~~~~~~~~---~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~l~~~ 275 (341)
|+.|.+..+.-.. ........|+|++|.+++...... .+..+++|+.+++.-..... .. ...+..+
T Consensus 79 L~~L~Ls~N~l~~-----l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~--~~----~~~~~~l 147 (290)
T 1p9a_G 79 LGTLDLSHNQLQS-----LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKT--LP----PGLLTPT 147 (290)
T ss_dssp CCEEECCSSCCSS-----CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCC--CC----TTTTTTC
T ss_pred CCEEECCCCcCCc-----CchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCc--cC----hhhcccc
Confidence 9999998842111 111112468899999987765433 35677888887764221111 00 4456678
Q ss_pred CCceEEEEecchhhhccccccCCCCCCCcccEEEEEEcCCChhHHHHHHhcCCCCCcEEEee
Q 047191 276 NNTTSLTVSYGVLCALDHAYHKWFPALSYLQHLEVAVGAIGWAVLPVILSSSVHLQSLVLRK 337 (341)
Q Consensus 276 ~~l~~L~l~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~~~~~l~~ll~~cp~L~~L~l~~ 337 (341)
++++.|.++.+.+..+. ...+..+++|++|++..+... .+..-+...++|+.|.+.+
T Consensus 148 ~~L~~L~L~~N~l~~l~---~~~~~~l~~L~~L~L~~N~l~--~ip~~~~~~~~L~~l~L~~ 204 (290)
T 1p9a_G 148 PKLEKLSLANNNLTELP---AGLLNGLENLDTLLLQENSLY--TIPKGFFGSHLLPFAFLHG 204 (290)
T ss_dssp TTCCEEECTTSCCSCCC---TTTTTTCTTCCEEECCSSCCC--CCCTTTTTTCCCSEEECCS
T ss_pred cCCCEEECCCCcCCccC---HHHhcCcCCCCEEECCCCcCC--ccChhhcccccCCeEEeCC
Confidence 99999999887665331 122346778999999886211 1222234457888887764
No 101
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=97.39 E-value=3.9e-05 Score=60.01 Aligned_cols=36 Identities=14% Similarity=0.002 Sum_probs=19.5
Q ss_pred CCCcccEEEEEEcC-CCh-hHHHHHHhcCCCCCcEEEe
Q 047191 301 ALSYLQHLEVAVGA-IGW-AVLPVILSSSVHLQSLVLR 336 (341)
Q Consensus 301 ~f~~L~~L~l~~~~-~~~-~~l~~ll~~cp~L~~L~l~ 336 (341)
.+++|++|++..+. .+. ......+..+|+|+.|++.
T Consensus 111 ~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 111 KLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp GCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred hCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 44566666665541 111 1123467777777777654
No 102
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=97.36 E-value=1e-05 Score=70.10 Aligned_cols=159 Identities=11% Similarity=0.069 Sum_probs=90.3
Q ss_pred ceEEEEeeeeeeccCCCcccCCchhhhhhhccC--CCcchHHHHHhcCCccceeEEeeeecCCCCceeEEEeCCCcceEE
Q 047191 126 VEVLKLMSDFLLKVPAGGTCFPNVKILTMQLES--PDNILTEKLFCSCPSLEELSIQAYLNDEGPTTKFVISSSTLKQCT 203 (341)
Q Consensus 126 L~~L~L~~~~~l~~~~~~~~~~~L~~L~~~L~~--~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~l~i~~~sL~~L~ 203 (341)
++.+.+ +...+...+....+++|+.| .+.+ +++-. -+..++.|+.|.+.++.-.+.. . --..++|+.|.
T Consensus 21 l~~l~l-~~~~i~~~~~~~~l~~L~~L--~l~~n~i~~l~---~l~~l~~L~~L~L~~N~i~~~~--~-l~~l~~L~~L~ 91 (263)
T 1xeu_A 21 AVKQNL-GKQSVTDLVSQKELSGVQNF--NGDNSNIQSLA---GMQFFTNLKELHLSHNQISDLS--P-LKDLTKLEELS 91 (263)
T ss_dssp HHHHHH-TCSCTTSEECHHHHTTCSEE--ECTTSCCCCCT---TGGGCTTCCEEECCSSCCCCCG--G-GTTCSSCCEEE
T ss_pred HHHHHh-cCCCcccccchhhcCcCcEE--ECcCCCcccch---HHhhCCCCCEEECCCCccCCCh--h-hccCCCCCEEE
Confidence 333444 43333332234567888888 8887 44322 3677899999999887554333 2 11346788888
Q ss_pred EeeecCccccccCceeEEEecCCceEEEeeccccCce-eecCCCCeeEEEEEEEeCccccCCCccchHHhhcCCCceEEE
Q 047191 204 LWVETEGEMFTQAEYKVRITAPSLERLHIMSDIFGKF-VVHDLNSLTDVILDIVYGEWSRVDPNRSIQLLQQLNNTTSLT 282 (341)
Q Consensus 204 i~~c~~~~~~~~~~~~~~~~~p~L~~l~~~~~~~~~~-~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~L~ 282 (341)
+.++.-... ..+. .++|++|.+++...... .+..+++|+.+++.-.. +. ....+..+++++.|.
T Consensus 92 L~~N~l~~l-----~~~~--~~~L~~L~L~~N~l~~~~~l~~l~~L~~L~Ls~N~-----i~---~~~~l~~l~~L~~L~ 156 (263)
T 1xeu_A 92 VNRNRLKNL-----NGIP--SACLSRLFLDNNELRDTDSLIHLKNLEILSIRNNK-----LK---SIVMLGFLSKLEVLD 156 (263)
T ss_dssp CCSSCCSCC-----TTCC--CSSCCEEECCSSCCSBSGGGTTCTTCCEEECTTSC-----CC---BCGGGGGCTTCCEEE
T ss_pred CCCCccCCc-----Cccc--cCcccEEEccCCccCCChhhcCcccccEEECCCCc-----CC---CChHHccCCCCCEEE
Confidence 887422111 1111 17888888887654432 35566777766553211 11 022455677777777
Q ss_pred EecchhhhccccccCCCCCCCcccEEEEEEc
Q 047191 283 VSYGVLCALDHAYHKWFPALSYLQHLEVAVG 313 (341)
Q Consensus 283 l~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~ 313 (341)
++.+.+..+ ..+..+++|+.|++..+
T Consensus 157 L~~N~i~~~-----~~l~~l~~L~~L~l~~N 182 (263)
T 1xeu_A 157 LHGNEITNT-----GGLTRLKKVNWIDLTGQ 182 (263)
T ss_dssp CTTSCCCBC-----TTSTTCCCCCEEEEEEE
T ss_pred CCCCcCcch-----HHhccCCCCCEEeCCCC
Confidence 776654332 22335667777777765
No 103
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=97.34 E-value=2.7e-05 Score=64.21 Aligned_cols=62 Identities=11% Similarity=0.067 Sum_probs=44.8
Q ss_pred cccccCcceEEEEeeeeeeccCCCcccCCchhhhhhhccC--CCcchHHHHHhcCCccceeEEeeeec
Q 047191 119 ELYASPSVEVLKLMSDFLLKVPAGGTCFPNVKILTMQLES--PDNILTEKLFCSCPSLEELSIQAYLN 184 (341)
Q Consensus 119 ~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~~~L~~--~~~~~l~~ll~~cp~Le~L~L~~c~~ 184 (341)
.+..+++|++|.+ +++.+..++....+++|++| .+.+ +++..... ++.+|+|+.|.+.++.-
T Consensus 61 ~l~~l~~L~~L~l-~~n~~~~~~~l~~l~~L~~L--~l~~n~l~~~~~~~-l~~l~~L~~L~Ls~n~i 124 (197)
T 4ezg_A 61 GIEYAHNIKDLTI-NNIHATNYNPISGLSNLERL--RIMGKDVTSDKIPN-LSGLTSLTLLDISHSAH 124 (197)
T ss_dssp TGGGCTTCSEEEE-ESCCCSCCGGGTTCTTCCEE--EEECTTCBGGGSCC-CTTCTTCCEEECCSSBC
T ss_pred HHhcCCCCCEEEc-cCCCCCcchhhhcCCCCCEE--EeECCccCcccChh-hcCCCCCCEEEecCCcc
Confidence 4556788999999 76666655456678899999 8888 55433333 56788899998888754
No 104
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=97.31 E-value=0.00017 Score=57.52 Aligned_cols=69 Identities=17% Similarity=0.042 Sum_probs=44.4
Q ss_pred hHHhhcCCCceEEEEecchhhhccccccCCCCCCCcccEEEEEEc-CCChh-HHHHHHhcCCCCCcEEEeeee
Q 047191 269 IQLLQQLNNTTSLTVSYGVLCALDHAYHKWFPALSYLQHLEVAVG-AIGWA-VLPVILSSSVHLQSLVLRKVI 339 (341)
Q Consensus 269 ~~~l~~~~~l~~L~l~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~-~~~~~-~l~~ll~~cp~L~~L~l~~~~ 339 (341)
..++..+++++.|.++.+.+..+. ....+..+++|++|++..+ -.... .....+..+|+|+.|++.+..
T Consensus 88 ~~~~~~l~~L~~L~Ls~N~l~~~~--~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 88 DMLAEKLPNLTHLNLSGNKLKDIS--TLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp CHHHHHCTTCCEEECBSSSCCSSG--GGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred HHHHhhCCCCCEEeccCCccCcch--hHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCC
Confidence 445566888888888887654331 1122346778899988887 22222 223577888999998877643
No 105
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=97.29 E-value=6.8e-05 Score=72.24 Aligned_cols=68 Identities=15% Similarity=0.103 Sum_probs=33.2
Q ss_pred CcceEEEEeeeeeeccCCCcccCCchhhhhhhccC--CCcchHHHHHhcCCccceeEEeeeecCCCCceeEEEeCCCcce
Q 047191 124 PSVEVLKLMSDFLLKVPAGGTCFPNVKILTMQLES--PDNILTEKLFCSCPSLEELSIQAYLNDEGPTTKFVISSSTLKQ 201 (341)
Q Consensus 124 ~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~~~L~~--~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~l~i~~~sL~~ 201 (341)
++|+.|+| ++..+...| ..+++|+.| +|.+ ++. +.. +. .+|+.|++.++.-.+++ . ..++|+.
T Consensus 80 ~~L~~L~L-s~N~l~~ip--~~l~~L~~L--~Ls~N~l~~--ip~-l~--~~L~~L~Ls~N~l~~lp--~---~l~~L~~ 144 (571)
T 3cvr_A 80 PQITVLEI-TQNALISLP--ELPASLEYL--DACDNRLST--LPE-LP--ASLKHLDVDNNQLTMLP--E---LPALLEY 144 (571)
T ss_dssp TTCSEEEC-CSSCCSCCC--CCCTTCCEE--ECCSSCCSC--CCC-CC--TTCCEEECCSSCCSCCC--C---CCTTCCE
T ss_pred CCCCEEEC-cCCCCcccc--cccCCCCEE--EccCCCCCC--cch-hh--cCCCEEECCCCcCCCCC--C---cCccccE
Confidence 45666666 544444332 334566666 6555 322 111 21 16666666655443333 2 3455666
Q ss_pred EEEee
Q 047191 202 CTLWV 206 (341)
Q Consensus 202 L~i~~ 206 (341)
|.+.+
T Consensus 145 L~Ls~ 149 (571)
T 3cvr_A 145 INADN 149 (571)
T ss_dssp EECCS
T ss_pred EeCCC
Confidence 66655
No 106
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=97.25 E-value=0.0001 Score=63.09 Aligned_cols=151 Identities=14% Similarity=0.077 Sum_probs=93.6
Q ss_pred CcceEEEEeeeeeeccC-C-CcccCCchhhhhhhccC--CCcchHHHHHhcCCccceeEEeeeecCCCCceeEEEeCCCc
Q 047191 124 PSVEVLKLMSDFLLKVP-A-GGTCFPNVKILTMQLES--PDNILTEKLFCSCPSLEELSIQAYLNDEGPTTKFVISSSTL 199 (341)
Q Consensus 124 ~~L~~L~L~~~~~l~~~-~-~~~~~~~L~~L~~~L~~--~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~l~i~~~sL 199 (341)
+.|+.|+| ++..+... + ...++++|+.| +|.+ ++.. ....+.+++.|+.|.+.++.-..... ...-..++|
T Consensus 35 ~~l~~L~L-~~n~l~~~~~~~~~~l~~L~~L--~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L 109 (251)
T 3m19_A 35 ADTEKLDL-QSTGLATLSDATFRGLTKLTWL--NLDYNQLQTL-SAGVFDDLTELGTLGLANNQLASLPL-GVFDHLTQL 109 (251)
T ss_dssp TTCCEEEC-TTSCCCCCCTTTTTTCTTCCEE--ECTTSCCCCC-CTTTTTTCTTCCEEECTTSCCCCCCT-TTTTTCTTC
T ss_pred CCCCEEEc-cCCCcCccCHhHhcCcccCCEE--ECCCCcCCcc-CHhHhccCCcCCEEECCCCcccccCh-hHhcccCCC
Confidence 57889999 76665433 2 34568899999 8888 4332 22335778999999998875432110 001134688
Q ss_pred ceEEEeeecCccccccCceeEEEecCCceEEEeeccccCce---eecCCCCeeEEEEEEEeCccccCCCccchHHhhcCC
Q 047191 200 KQCTLWVETEGEMFTQAEYKVRITAPSLERLHIMSDIFGKF---VVHDLNSLTDVILDIVYGEWSRVDPNRSIQLLQQLN 276 (341)
Q Consensus 200 ~~L~i~~c~~~~~~~~~~~~~~~~~p~L~~l~~~~~~~~~~---~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~l~~~~ 276 (341)
+.|.+.++.-... ....--..++|++|.+.+.....+ .+..+++|+.+++....... +. ...+..++
T Consensus 110 ~~L~L~~N~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~--~~----~~~~~~l~ 179 (251)
T 3m19_A 110 DKLYLGGNQLKSL----PSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQS--VP----HGAFDRLG 179 (251)
T ss_dssp CEEECCSSCCCCC----CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC--CC----TTTTTTCT
T ss_pred CEEEcCCCcCCCc----ChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCc--cC----HHHHhCCC
Confidence 9998887421111 000011368999999988765433 35677889988775321111 10 44567889
Q ss_pred CceEEEEecchhh
Q 047191 277 NTTSLTVSYGVLC 289 (341)
Q Consensus 277 ~l~~L~l~~~~~~ 289 (341)
+++.|.++.+.+.
T Consensus 180 ~L~~L~l~~N~~~ 192 (251)
T 3m19_A 180 KLQTITLFGNQFD 192 (251)
T ss_dssp TCCEEECCSCCBC
T ss_pred CCCEEEeeCCcee
Confidence 9999999987654
No 107
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=97.21 E-value=0.00011 Score=59.35 Aligned_cols=63 Identities=17% Similarity=0.144 Sum_probs=28.1
Q ss_pred hcCCCceEEEEecchhhhccccccCCCCCCCcccEEEEEEcCC-C-hhHHHHHHhcCCCCCcEEEee
Q 047191 273 QQLNNTTSLTVSYGVLCALDHAYHKWFPALSYLQHLEVAVGAI-G-WAVLPVILSSSVHLQSLVLRK 337 (341)
Q Consensus 273 ~~~~~l~~L~l~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~-~-~~~l~~ll~~cp~L~~L~l~~ 337 (341)
..+++++.|.++.+.+..+. ....+..+++|+.|++..+.. . ...-...+..+|+|+.|++.+
T Consensus 85 ~~l~~L~~L~L~~N~i~~~~--~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~ 149 (176)
T 1a9n_A 85 QALPDLTELILTNNSLVELG--DLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQK 149 (176)
T ss_dssp HHCTTCCEEECCSCCCCCGG--GGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEE
T ss_pred hcCCCCCEEECCCCcCCcch--hhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCc
Confidence 45555555555554432221 011122445566666655411 1 111123455666666665554
No 108
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=97.16 E-value=0.00048 Score=58.33 Aligned_cols=168 Identities=14% Similarity=0.059 Sum_probs=99.7
Q ss_pred cccccCcceEEEEeeeee-ec-cCC-CcccCCchhhhhhhccC---CCcchHHHHHhcCCccceeEEeeeecCCCCceeE
Q 047191 119 ELYASPSVEVLKLMSDFL-LK-VPA-GGTCFPNVKILTMQLES---PDNILTEKLFCSCPSLEELSIQAYLNDEGPTTKF 192 (341)
Q Consensus 119 ~~~~~~~L~~L~L~~~~~-l~-~~~-~~~~~~~L~~L~~~L~~---~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~l 192 (341)
.+..+++|++|++ ++.. +. .++ ...++++|+.| .|.+ ++.-. ...+.++++|+.|.+.++.-.+++ .
T Consensus 50 ~~~~l~~L~~L~l-~~n~~l~~i~~~~f~~l~~L~~L--~l~~~n~l~~i~-~~~f~~l~~L~~L~l~~n~l~~lp--~- 122 (239)
T 2xwt_C 50 AFSNLPNISRIYV-SIDVTLQQLESHSFYNLSKVTHI--EIRNTRNLTYID-PDALKELPLLKFLGIFNTGLKMFP--D- 122 (239)
T ss_dssp TTTTCTTCCEEEE-ECCSSCCEECTTTEESCTTCCEE--EEEEETTCCEEC-TTSEECCTTCCEEEEEEECCCSCC--C-
T ss_pred HccCCCCCcEEeC-CCCCCcceeCHhHcCCCcCCcEE--ECCCCCCeeEcC-HHHhCCCCCCCEEeCCCCCCcccc--c-
Confidence 4556899999999 6553 43 332 34578999999 8863 33211 123668999999999998654333 2
Q ss_pred EEeCCCcc---eEEEeeecCccccccCceeEE----EecCCce-EEEeeccccCcee---ecCCCCeeEEEEEEEeCccc
Q 047191 193 VISSSTLK---QCTLWVETEGEMFTQAEYKVR----ITAPSLE-RLHIMSDIFGKFV---VHDLNSLTDVILDIVYGEWS 261 (341)
Q Consensus 193 ~i~~~sL~---~L~i~~c~~~~~~~~~~~~~~----~~~p~L~-~l~~~~~~~~~~~---~~~~~~L~~~~l~~~~~~~~ 261 (341)
.-..++|+ .|.+.++.. ...+. -..++|+ +|.+.+.....+. +.. ++|+.+.+.-..
T Consensus 123 ~~~l~~L~~L~~L~l~~N~~-------l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~---- 190 (239)
T 2xwt_C 123 LTKVYSTDIFFILEITDNPY-------MTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNK---- 190 (239)
T ss_dssp CTTCCBCCSEEEEEEESCTT-------CCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCT----
T ss_pred cccccccccccEEECCCCcc-------hhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCC----
Confidence 11334566 888887311 11111 1367888 9998776544321 222 556665543210
Q ss_pred cCCCccchHHhhcC-CCceEEEEecchhhhccccccCCCCCCCcccEEEEEE
Q 047191 262 RVDPNRSIQLLQQL-NNTTSLTVSYGVLCALDHAYHKWFPALSYLQHLEVAV 312 (341)
Q Consensus 262 ~~~~~~~~~~l~~~-~~l~~L~l~~~~~~~~~~~~~~~~~~f~~L~~L~l~~ 312 (341)
.+... ....+.++ ++++.|.++.+.+..+.. ..|++|+.|.+..
T Consensus 191 ~l~~i-~~~~~~~l~~~L~~L~l~~N~l~~l~~------~~~~~L~~L~l~~ 235 (239)
T 2xwt_C 191 YLTVI-DKDAFGGVYSGPSLLDVSQTSVTALPS------KGLEHLKELIARN 235 (239)
T ss_dssp TCCEE-CTTTTTTCSBCCSEEECTTCCCCCCCC------TTCTTCSEEECTT
T ss_pred CcccC-CHHHhhccccCCcEEECCCCccccCCh------hHhccCceeeccC
Confidence 01100 03456677 999999998876543311 1578899988753
No 109
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=97.11 E-value=4.3e-05 Score=61.13 Aligned_cols=75 Identities=17% Similarity=0.099 Sum_probs=43.9
Q ss_pred CcceEEEEeeeeeec--cCCC-cccCCchhhhhhhccC--CCcchHHHHHhcCCccceeEEeeeecCC-CCceeEEEeCC
Q 047191 124 PSVEVLKLMSDFLLK--VPAG-GTCFPNVKILTMQLES--PDNILTEKLFCSCPSLEELSIQAYLNDE-GPTTKFVISSS 197 (341)
Q Consensus 124 ~~L~~L~L~~~~~l~--~~~~-~~~~~~L~~L~~~L~~--~~~~~l~~ll~~cp~Le~L~L~~c~~~~-~~~~~l~i~~~ 197 (341)
++|+.|++ .++.+. ..+. ...+++|+.| +|.+ ++.- ..+..++.|+.|++.++.-.. .. ...-..+
T Consensus 24 ~~L~~L~l-~~n~l~~~~i~~~~~~l~~L~~L--~l~~n~l~~~---~~~~~l~~L~~L~Ls~N~l~~~~~--~~~~~l~ 95 (168)
T 2ell_A 24 AAVRELVL-DNCKSNDGKIEGLTAEFVNLEFL--SLINVGLISV---SNLPKLPKLKKLELSENRIFGGLD--MLAEKLP 95 (168)
T ss_dssp TSCSEEEC-CSCBCBTTBCSSCCGGGGGCCEE--EEESSCCCCC---SSCCCCSSCCEEEEESCCCCSCCC--HHHHHCT
T ss_pred ccCCEEEC-CCCCCChhhHHHHHHhCCCCCEE--eCcCCCCCCh---hhhccCCCCCEEECcCCcCchHHH--HHHhhCC
Confidence 56778888 666554 3323 3557777777 7777 4332 446677777777777775432 12 1111245
Q ss_pred CcceEEEee
Q 047191 198 TLKQCTLWV 206 (341)
Q Consensus 198 sL~~L~i~~ 206 (341)
+|+.|.+.+
T Consensus 96 ~L~~L~Ls~ 104 (168)
T 2ell_A 96 NLTHLNLSG 104 (168)
T ss_dssp TCCEEECBS
T ss_pred CCCEEeccC
Confidence 566666665
No 110
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=97.11 E-value=0.0001 Score=69.07 Aligned_cols=75 Identities=13% Similarity=0.089 Sum_probs=41.5
Q ss_pred cccccCcceEEEEeeeeeeccCCCcccCCchhhhhhhccC--CCcchHHHHHhcCCccceeEEeeeecCCCCceeEEEeC
Q 047191 119 ELYASPSVEVLKLMSDFLLKVPAGGTCFPNVKILTMQLES--PDNILTEKLFCSCPSLEELSIQAYLNDEGPTTKFVISS 196 (341)
Q Consensus 119 ~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~~~L~~--~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~l~i~~ 196 (341)
.+..+++|+.|++ +++.+...+. ..++|+.| ++.+ ++. +.. +..++.|+.|.+.++.-.++. . ..
T Consensus 190 ~~~~l~~L~~L~l-~~N~l~~l~~--~~~~L~~L--~l~~n~l~~--lp~-~~~l~~L~~L~l~~N~l~~l~--~---~~ 256 (454)
T 1jl5_A 190 ELQNLPFLTAIYA-DNNSLKKLPD--LPLSLESI--VAGNNILEE--LPE-LQNLPFLTTIYADNNLLKTLP--D---LP 256 (454)
T ss_dssp CCTTCTTCCEEEC-CSSCCSSCCC--CCTTCCEE--ECCSSCCSS--CCC-CTTCTTCCEEECCSSCCSSCC--S---CC
T ss_pred cccCCCCCCEEEC-CCCcCCcCCC--CcCcccEE--ECcCCcCCc--ccc-cCCCCCCCEEECCCCcCCccc--c---cc
Confidence 3455778888888 6555543322 12577777 7766 331 112 556777777777766433222 1 12
Q ss_pred CCcceEEEee
Q 047191 197 STLKQCTLWV 206 (341)
Q Consensus 197 ~sL~~L~i~~ 206 (341)
++|+.|.+.+
T Consensus 257 ~~L~~L~l~~ 266 (454)
T 1jl5_A 257 PSLEALNVRD 266 (454)
T ss_dssp TTCCEEECCS
T ss_pred cccCEEECCC
Confidence 4566666555
No 111
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=97.09 E-value=0.00014 Score=64.43 Aligned_cols=105 Identities=18% Similarity=0.109 Sum_probs=57.0
Q ss_pred CchhhhhhhccC--CCcchHHHHHh--cCCccceeEEeeeecCCCCceeEE-EeCCCcceEEEeeecCccccc-cCceeE
Q 047191 147 PNVKILTMQLES--PDNILTEKLFC--SCPSLEELSIQAYLNDEGPTTKFV-ISSSTLKQCTLWVETEGEMFT-QAEYKV 220 (341)
Q Consensus 147 ~~L~~L~~~L~~--~~~~~l~~ll~--~cp~Le~L~L~~c~~~~~~~~~l~-i~~~sL~~L~i~~c~~~~~~~-~~~~~~ 220 (341)
..++.| .+.. +++..+..+.. .++.|++|.+.++.-.+..+..+. -..++|+.|++..+.-..... .....+
T Consensus 64 ~~l~~l--~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~ 141 (310)
T 4glp_A 64 LRVRRL--TVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQ 141 (310)
T ss_dssp CCCCEE--EECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHT
T ss_pred cceeEE--EEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHh
Confidence 345666 6666 66666665543 467799999998854321200111 346788999998842111000 000111
Q ss_pred EEecCCceEEEeeccccCce---eecCCCCeeEEEEE
Q 047191 221 RITAPSLERLHIMSDIFGKF---VVHDLNSLTDVILD 254 (341)
Q Consensus 221 ~~~~p~L~~l~~~~~~~~~~---~~~~~~~L~~~~l~ 254 (341)
. ..|+|++|.+++...... .+..+++|+.+++.
T Consensus 142 ~-~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls 177 (310)
T 4glp_A 142 W-LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLS 177 (310)
T ss_dssp T-BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECC
T ss_pred h-hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECC
Confidence 1 477888888877654322 23455666665543
No 112
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=96.99 E-value=3.4e-06 Score=77.04 Aligned_cols=57 Identities=18% Similarity=0.120 Sum_probs=34.3
Q ss_pred CcceEEEEeeeeeeccCC-----C--cccCCchhhhhhhccC--CCcchHHHHHhcCCccceeEEeeee
Q 047191 124 PSVEVLKLMSDFLLKVPA-----G--GTCFPNVKILTMQLES--PDNILTEKLFCSCPSLEELSIQAYL 183 (341)
Q Consensus 124 ~~L~~L~L~~~~~l~~~~-----~--~~~~~~L~~L~~~L~~--~~~~~l~~ll~~cp~Le~L~L~~c~ 183 (341)
+.|++|+| +++.+.... . ....++|+.| +|.+ +++.++..+...+++|+.|+|.+|.
T Consensus 72 ~~L~~L~L-s~n~l~~~~~~~l~~~L~~~~~~L~~L--~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~ 137 (372)
T 3un9_A 72 SSLRQLNL-AGVRMTPVKCTVVAAVLGSGRHALDEV--NLASCQLDPAGLRTLLPVFLRARKLGLQLNS 137 (372)
T ss_dssp TTCCEEEC-TTSCCCHHHHHHHHHHHSSCSSCEEEE--ECTTCCCCHHHHHHTHHHHHTEEEEECCSSC
T ss_pred hhCCEEEe-cCCCCCHHHHHHHHHHHhhCCCCceEE--EecCCCCCHHHHHHHHHHHHhccHhhcCCCC
Confidence 45777777 555443210 0 0122577777 7777 7777777766666777777777763
No 113
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=96.97 E-value=1.9e-05 Score=68.75 Aligned_cols=193 Identities=17% Similarity=0.095 Sum_probs=114.0
Q ss_pred CcceEEEEeeeeeecc-CC-CcccCCchhhhhhhccC--CCcchHHHHHhcCCccceeEEeeeecCCCCceeEEEeCCCc
Q 047191 124 PSVEVLKLMSDFLLKV-PA-GGTCFPNVKILTMQLES--PDNILTEKLFCSCPSLEELSIQAYLNDEGPTTKFVISSSTL 199 (341)
Q Consensus 124 ~~L~~L~L~~~~~l~~-~~-~~~~~~~L~~L~~~L~~--~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~l~i~~~sL 199 (341)
++|++|++ ++..+.. ++ ...++++|++| +|.+ ++.-. ...+.+++.|+.|++.++.-..... ..--..++|
T Consensus 28 ~~l~~L~l-s~n~l~~~~~~~~~~l~~L~~L--~l~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L 102 (276)
T 2z62_A 28 FSTKNLDL-SFNPLRHLGSYSFFSFPELQVL--DLSRCEIQTIE-DGAYQSLSHLSTLILTGNPIQSLAL-GAFSGLSSL 102 (276)
T ss_dssp TTCCEEEC-TTCCCCEECTTTTTTCTTCSEE--ECTTCCCCEEC-TTTTTTCTTCCEEECTTCCCCEECT-TTTTTCTTC
T ss_pred CCccEEEC-CCCcccccCHhHhccccCCcEE--ECCCCcCCccC-HHHccCCcCCCEEECCCCccCccCh-hhhcCCccc
Confidence 57999999 7665543 22 45578999999 9988 44322 2236789999999998875321000 001134689
Q ss_pred ceEEEeeecCccccccCceeEEEecCCceEEEeeccccCc----eeecCCCCeeEEEEEEEeCccccCCCccchHHhhcC
Q 047191 200 KQCTLWVETEGEMFTQAEYKVRITAPSLERLHIMSDIFGK----FVVHDLNSLTDVILDIVYGEWSRVDPNRSIQLLQQL 275 (341)
Q Consensus 200 ~~L~i~~c~~~~~~~~~~~~~~~~~p~L~~l~~~~~~~~~----~~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~l~~~ 275 (341)
+.|.+..+.-... ........++|++|.+.+..... ..+..+++|+.+++....... .. ...+..+
T Consensus 103 ~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~--~~----~~~~~~l 172 (276)
T 2z62_A 103 QKLVAVETNLASL----ENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS--IY----CTDLRVL 172 (276)
T ss_dssp CEEECTTSCCCCS----TTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCE--EC----GGGGHHH
T ss_pred cEEECCCCCcccc----CchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCc--CC----HHHhhhh
Confidence 9999887422111 01012246899999998765433 236677888887764321111 00 2223333
Q ss_pred CCce----EEEEecchhhhccccccCCCCCCCcccEEEEEEcCC-ChhHHHHHHhcCCCCCcEEEee
Q 047191 276 NNTT----SLTVSYGVLCALDHAYHKWFPALSYLQHLEVAVGAI-GWAVLPVILSSSVHLQSLVLRK 337 (341)
Q Consensus 276 ~~l~----~L~l~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~-~~~~l~~ll~~cp~L~~L~l~~ 337 (341)
++++ .|.++.+.+..+.. ......+|++|++..+.. ... ...+..+|+|+.|++.+
T Consensus 173 ~~L~~l~l~L~ls~n~l~~~~~----~~~~~~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~l~~ 233 (276)
T 2z62_A 173 HQMPLLNLSLDLSLNPMNFIQP----GAFKEIRLKELALDTNQLKSVP--DGIFDRLTSLQKIWLHT 233 (276)
T ss_dssp HTCTTCCEEEECCSSCCCEECT----TSSCSCCEEEEECCSSCCSCCC--TTTTTTCCSCCEEECCS
T ss_pred hhccccceeeecCCCcccccCc----cccCCCcccEEECCCCceeecC--HhHhcccccccEEEccC
Confidence 4444 67777665543311 111334799999988721 211 24567899999999875
No 114
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=96.97 E-value=0.00015 Score=67.92 Aligned_cols=139 Identities=14% Similarity=0.107 Sum_probs=62.4
Q ss_pred ccccCcceEEEEeeeeeeccCCCcccCCchhhhhhhccC--CCcchHHHHHhcCCccceeEEeeeecCCCCceeEEEeCC
Q 047191 120 LYASPSVEVLKLMSDFLLKVPAGGTCFPNVKILTMQLES--PDNILTEKLFCSCPSLEELSIQAYLNDEGPTTKFVISSS 197 (341)
Q Consensus 120 ~~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~~~L~~--~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~l~i~~~ 197 (341)
+..+++|+.|++ ++..+...|. ..++|++| ++.+ ++. +.. +.++++|+.|.+.++.-.++. . ..+
T Consensus 149 ~~~l~~L~~L~l-~~N~l~~lp~--~~~~L~~L--~L~~n~l~~--l~~-~~~l~~L~~L~l~~N~l~~l~--~---~~~ 215 (454)
T 1jl5_A 149 LQNSSFLKIIDV-DNNSLKKLPD--LPPSLEFI--AAGNNQLEE--LPE-LQNLPFLTAIYADNNSLKKLP--D---LPL 215 (454)
T ss_dssp CTTCTTCCEEEC-CSSCCSCCCC--CCTTCCEE--ECCSSCCSS--CCC-CTTCTTCCEEECCSSCCSSCC--C---CCT
T ss_pred cCCCCCCCEEEC-CCCcCcccCC--CcccccEE--ECcCCcCCc--Ccc-ccCCCCCCEEECCCCcCCcCC--C---CcC
Confidence 444555666666 4444332211 12456666 5555 222 111 455666666666665433222 1 124
Q ss_pred CcceEEEeeecCccccccCceeEEEecCCceEEEeeccccCceeecCCCCeeEEEEEEEeCccccCCCccchHHhhcCCC
Q 047191 198 TLKQCTLWVETEGEMFTQAEYKVRITAPSLERLHIMSDIFGKFVVHDLNSLTDVILDIVYGEWSRVDPNRSIQLLQQLNN 277 (341)
Q Consensus 198 sL~~L~i~~c~~~~~~~~~~~~~~~~~p~L~~l~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~l~~~~~ 277 (341)
+|+.|.+.+|.-.. ... ....++|++|.+++.....+. ...++|+.+++.... + ..+....++
T Consensus 216 ~L~~L~l~~n~l~~-----lp~-~~~l~~L~~L~l~~N~l~~l~-~~~~~L~~L~l~~N~-----l-----~~l~~~~~~ 278 (454)
T 1jl5_A 216 SLESIVAGNNILEE-----LPE-LQNLPFLTTIYADNNLLKTLP-DLPPSLEALNVRDNY-----L-----TDLPELPQS 278 (454)
T ss_dssp TCCEEECCSSCCSS-----CCC-CTTCTTCCEEECCSSCCSSCC-SCCTTCCEEECCSSC-----C-----SCCCCCCTT
T ss_pred cccEEECcCCcCCc-----ccc-cCCCCCCCEEECCCCcCCccc-ccccccCEEECCCCc-----c-----cccCcccCc
Confidence 66666666632111 111 113566666666654332211 122455554442110 0 111223466
Q ss_pred ceEEEEecchh
Q 047191 278 TTSLTVSYGVL 288 (341)
Q Consensus 278 l~~L~l~~~~~ 288 (341)
++.|.++.+.+
T Consensus 279 L~~L~ls~N~l 289 (454)
T 1jl5_A 279 LTFLDVSENIF 289 (454)
T ss_dssp CCEEECCSSCC
T ss_pred CCEEECcCCcc
Confidence 77777766544
No 115
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=96.88 E-value=0.00052 Score=57.52 Aligned_cols=53 Identities=21% Similarity=0.208 Sum_probs=30.2
Q ss_pred HhhcCCCceEEEEecchhhhccccccCCCCCCCcccEEEEEEc----CCChhHHHHHHhc
Q 047191 271 LLQQLNNTTSLTVSYGVLCALDHAYHKWFPALSYLQHLEVAVG----AIGWAVLPVILSS 326 (341)
Q Consensus 271 ~l~~~~~l~~L~l~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~----~~~~~~l~~ll~~ 326 (341)
.+..+++++.|.++.+.+..+.. ..+..+++|+.|++..+ .....++...++.
T Consensus 123 ~~~~l~~L~~L~L~~N~l~~~~~---~~~~~l~~L~~L~L~~N~~~c~c~l~~l~~~l~~ 179 (220)
T 2v9t_B 123 AFQDLHNLNLLSLYDNKLQTIAK---GTFSPLRAIQTMHLAQNPFICDCHLKWLADYLHT 179 (220)
T ss_dssp TTTTCTTCCEEECCSSCCSCCCT---TTTTTCTTCCEEECCSSCEECSGGGHHHHHHHHH
T ss_pred HcCCCCCCCEEECCCCcCCEECH---HHHhCCCCCCEEEeCCCCcCCCCccHHHHHHHHh
Confidence 34466777777777766543311 12335667888888776 2234555555554
No 116
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=96.77 E-value=0.00098 Score=58.92 Aligned_cols=204 Identities=15% Similarity=-0.004 Sum_probs=104.9
Q ss_pred CcceEEEEeeeeeeccCCCcccCCchhhhhhhccC--CCcchHHHHH-------hcCCccceeEEeeeecCCCCceeE-E
Q 047191 124 PSVEVLKLMSDFLLKVPAGGTCFPNVKILTMQLES--PDNILTEKLF-------CSCPSLEELSIQAYLNDEGPTTKF-V 193 (341)
Q Consensus 124 ~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~~~L~~--~~~~~l~~ll-------~~cp~Le~L~L~~c~~~~~~~~~l-~ 193 (341)
.+|+.|.+ .+..+..| ... ...|+.| +|.+ ++...+...+ .+++.|+.|++.++.-.+..+..+ .
T Consensus 43 ~~L~~l~l-~~n~l~~p-~~~-~~~L~~L--~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 117 (312)
T 1wwl_A 43 RSLEYLLK-RVDTEADL-GQF-TDIIKSL--SLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLE 117 (312)
T ss_dssp EECTTHHH-HCCTTCCC-HHH-HHHHHHC--CCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSS
T ss_pred CCceeEee-cccccccH-HHH-HHHHhhc--ccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHH
Confidence 44555555 44333222 211 1348888 8887 4332222222 268999999999986432110011 1
Q ss_pred EeCCCcceEEEeeecCccccccCceeEEE----ecCCceEEEeeccccCce---eecCCCCeeEEEEEEEeCccc-cCCC
Q 047191 194 ISSSTLKQCTLWVETEGEMFTQAEYKVRI----TAPSLERLHIMSDIFGKF---VVHDLNSLTDVILDIVYGEWS-RVDP 265 (341)
Q Consensus 194 i~~~sL~~L~i~~c~~~~~~~~~~~~~~~----~~p~L~~l~~~~~~~~~~---~~~~~~~L~~~~l~~~~~~~~-~~~~ 265 (341)
-..++|+.|++.++.-.+. ...+.- ..++|++|.+++...... .+..+++|+.+++.-...... .+-
T Consensus 118 ~~l~~L~~L~Ls~N~l~~~----~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~- 192 (312)
T 1wwl_A 118 ATGPDLNILNLRNVSWATR----DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLI- 192 (312)
T ss_dssp CCSCCCSEEEEESCBCSSS----SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHH-
T ss_pred hcCCCccEEEccCCCCcch----hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHH-
Confidence 3567899999998421110 000000 128899999987755432 356777888776642211000 000
Q ss_pred ccchHHhhcCCCceEEEEecchhhhccccccCCCCCCCcccEEEEEEcCCChhHHHHHHhcCCCCCcEEEeeee
Q 047191 266 NRSIQLLQQLNNTTSLTVSYGVLCALDHAYHKWFPALSYLQHLEVAVGAIGWAVLPVILSSSVHLQSLVLRKVI 339 (341)
Q Consensus 266 ~~~~~~l~~~~~l~~L~l~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~~~~~l~~ll~~cp~L~~L~l~~~~ 339 (341)
....+..+++++.|.++.+.+..+.......+..+++|++|++..+......-......+++|+.|++.+-.
T Consensus 193 --~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~ 264 (312)
T 1wwl_A 193 --SALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTG 264 (312)
T ss_dssp --HHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSC
T ss_pred --HHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCc
Confidence 011126778888888887765422100000011456888888877621110001123446888888876533
No 117
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=96.76 E-value=0.00011 Score=59.28 Aligned_cols=57 Identities=11% Similarity=0.056 Sum_probs=32.5
Q ss_pred cccCcceEEEEeeeeeeccCCCcccC-CchhhhhhhccC--CCcchHHHHHhcCCccceeEEeeee
Q 047191 121 YASPSVEVLKLMSDFLLKVPAGGTCF-PNVKILTMQLES--PDNILTEKLFCSCPSLEELSIQAYL 183 (341)
Q Consensus 121 ~~~~~L~~L~L~~~~~l~~~~~~~~~-~~L~~L~~~L~~--~~~~~l~~ll~~cp~Le~L~L~~c~ 183 (341)
..+.+|+.|.+ +++.+...+....+ ++|+.| +|.+ +++- .-+..++.|+.|++.++.
T Consensus 16 ~~~~~L~~L~l-~~n~l~~i~~~~~~~~~L~~L--~Ls~N~l~~~---~~l~~l~~L~~L~Ls~N~ 75 (176)
T 1a9n_A 16 TNAVRDRELDL-RGYKIPVIENLGATLDQFDAI--DFSDNEIRKL---DGFPLLRRLKTLLVNNNR 75 (176)
T ss_dssp ECTTSCEEEEC-TTSCCCSCCCGGGGTTCCSEE--ECCSSCCCEE---CCCCCCSSCCEEECCSSC
T ss_pred CCcCCceEEEe-eCCCCchhHHhhhcCCCCCEE--ECCCCCCCcc---cccccCCCCCEEECCCCc
Confidence 44677888888 65555443333333 367777 6666 3332 234556666666666653
No 118
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=96.70 E-value=3.1e-06 Score=81.74 Aligned_cols=195 Identities=10% Similarity=-0.017 Sum_probs=108.2
Q ss_pred cccCcceEEEEeeeeeecc-CCCcccCCchhhhhhhccC-C-------------CcchHHHHHhcCCccceeE-Eeeeec
Q 047191 121 YASPSVEVLKLMSDFLLKV-PAGGTCFPNVKILTMQLES-P-------------DNILTEKLFCSCPSLEELS-IQAYLN 184 (341)
Q Consensus 121 ~~~~~L~~L~L~~~~~l~~-~~~~~~~~~L~~L~~~L~~-~-------------~~~~l~~ll~~cp~Le~L~-L~~c~~ 184 (341)
..++.|++|+| ++..+.. |.....+++|+.| .+.. . ........+..+++|+.|+ +..-.-
T Consensus 346 ~~~~~L~~L~L-s~n~L~~Lp~~i~~l~~L~~L--~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~ 422 (567)
T 1dce_A 346 ATDEQLFRCEL-SVEKSTVLQSELESCKELQEL--EPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL 422 (567)
T ss_dssp STTTTSSSCCC-CHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHH
T ss_pred ccCccceeccC-ChhhHHhhHHHHHHHHHHHHh--ccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhccc
Confidence 34677777777 5544432 3234456777777 6644 2 2233445566677777776 221100
Q ss_pred CCCCc------eeEEEeCCCcceEEEeeecCccccccCceeEEEecCCceEEEeeccccCce--eecCCCCeeEEEEEEE
Q 047191 185 DEGPT------TKFVISSSTLKQCTLWVETEGEMFTQAEYKVRITAPSLERLHIMSDIFGKF--VVHDLNSLTDVILDIV 256 (341)
Q Consensus 185 ~~~~~------~~l~i~~~sL~~L~i~~c~~~~~~~~~~~~~~~~~p~L~~l~~~~~~~~~~--~~~~~~~L~~~~l~~~ 256 (341)
..+.. ..-.+....|+.|.+.++.-.. ... .-..++|+.|.+++.....+ .+..+++|+.+++.-.
T Consensus 423 ~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-----lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N 496 (567)
T 1dce_A 423 DDLRSKFLLENSVLKMEYADVRVLHLAHKDLTV-----LCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDN 496 (567)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-----CCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSS
T ss_pred chhhhhhhhcccccccCccCceEEEecCCCCCC-----CcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCC
Confidence 00000 0001122357777777631111 111 22467888888887655432 4667788888776432
Q ss_pred eCccccCCCccchHHhhcCCCceEEEEecchhhhccccccCCCCCCCcccEEEEEEc--CCChhHHHHHHhcCCCCCcEE
Q 047191 257 YGEWSRVDPNRSIQLLQQLNNTTSLTVSYGVLCALDHAYHKWFPALSYLQHLEVAVG--AIGWAVLPVILSSSVHLQSLV 334 (341)
Q Consensus 257 ~~~~~~~~~~~~~~~l~~~~~l~~L~l~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~--~~~~~~l~~ll~~cp~L~~L~ 334 (341)
.... ..-+..+++++.|.++.+.+..+.. ...+..+++|+.|+|..+ .........+...+|+|+.|.
T Consensus 497 ~l~~--------lp~l~~l~~L~~L~Ls~N~l~~~~~--p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 497 ALEN--------VDGVANLPRLQELLLCNNRLQQSAA--IQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp CCCC--------CGGGTTCSSCCEEECCSSCCCSSST--TGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred CCCC--------CcccCCCCCCcEEECCCCCCCCCCC--cHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence 1111 2246678999999998876543310 112336778999999887 112234556777899999885
No 119
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=96.66 E-value=0.0019 Score=62.53 Aligned_cols=61 Identities=18% Similarity=0.250 Sum_probs=30.2
Q ss_pred cccccCcceEEEEeeeeeecc-CC-CcccCCchhhhhhhccC--CCcchHHHHHhcCCccceeEEeeee
Q 047191 119 ELYASPSVEVLKLMSDFLLKV-PA-GGTCFPNVKILTMQLES--PDNILTEKLFCSCPSLEELSIQAYL 183 (341)
Q Consensus 119 ~~~~~~~L~~L~L~~~~~l~~-~~-~~~~~~~L~~L~~~L~~--~~~~~l~~ll~~cp~Le~L~L~~c~ 183 (341)
.+..+++|++|+| +++.+.. ++ ...++++|++| +|.+ ++.-. ...+.++++|+.|++.++.
T Consensus 71 ~f~~l~~L~~L~L-s~N~i~~i~~~~f~~L~~L~~L--~Ls~N~l~~l~-~~~f~~L~~L~~L~Ls~N~ 135 (635)
T 4g8a_A 71 SFFSFPELQVLDL-SRCEIQTIEDGAYQSLSHLSTL--ILTGNPIQSLA-LGAFSGLSSLQKLVAVETN 135 (635)
T ss_dssp TTTTCTTCCEEEC-TTCCCCEECTTTTTTCTTCCEE--ECTTCCCCEEC-GGGGTTCTTCCEEECTTSC
T ss_pred HHhCCCCCCEEEC-CCCcCCCcChhHhcCCCCCCEE--EccCCcCCCCC-HHHhcCCCCCCEEECCCCc
Confidence 3444566666666 5444422 22 23345666666 6655 32211 1224556666666666653
No 120
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=96.63 E-value=8.7e-05 Score=58.01 Aligned_cols=117 Identities=14% Similarity=0.065 Sum_probs=50.8
Q ss_pred CcceEEEEeeeeeec--cCC-CcccCCchhhhhhhccC--CCcchHHHHHhcCCccceeEEeeeecCC-CCceeEEEeCC
Q 047191 124 PSVEVLKLMSDFLLK--VPA-GGTCFPNVKILTMQLES--PDNILTEKLFCSCPSLEELSIQAYLNDE-GPTTKFVISSS 197 (341)
Q Consensus 124 ~~L~~L~L~~~~~l~--~~~-~~~~~~~L~~L~~~L~~--~~~~~l~~ll~~cp~Le~L~L~~c~~~~-~~~~~l~i~~~ 197 (341)
++|+.|++ +++.+. ..+ ....+++|+.| ++.+ ++.- ..+..++.|+.|++.++.-.+ .. ...-..+
T Consensus 17 ~~l~~L~l-~~n~l~~~~~~~~~~~l~~L~~L--~l~~n~l~~~---~~~~~l~~L~~L~Ls~n~i~~~~~--~~~~~l~ 88 (149)
T 2je0_A 17 SDVKELVL-DNSRSNEGKLEGLTDEFEELEFL--STINVGLTSI---ANLPKLNKLKKLELSDNRVSGGLE--VLAEKCP 88 (149)
T ss_dssp GGCSEEEC-TTCBCBTTBCCSCCTTCTTCCEE--ECTTSCCCCC---TTCCCCTTCCEEECCSSCCCSCTH--HHHHHCT
T ss_pred ccCeEEEc-cCCcCChhHHHHHHhhcCCCcEE--ECcCCCCCCc---hhhhcCCCCCEEECCCCcccchHH--HHhhhCC
Confidence 34555555 444443 221 22345555555 5555 3222 334455555555555554322 11 1111244
Q ss_pred CcceEEEeeecCccccccCceeEEEecCCceEEEeeccccCce------eecCCCCeeEE
Q 047191 198 TLKQCTLWVETEGEMFTQAEYKVRITAPSLERLHIMSDIFGKF------VVHDLNSLTDV 251 (341)
Q Consensus 198 sL~~L~i~~c~~~~~~~~~~~~~~~~~p~L~~l~~~~~~~~~~------~~~~~~~L~~~ 251 (341)
+|+.|.+.+|.-... .........|+|++|.+++...... .+..+++|+.+
T Consensus 89 ~L~~L~ls~N~i~~~---~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L 145 (149)
T 2je0_A 89 NLTHLNLSGNKIKDL---STIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYL 145 (149)
T ss_dssp TCCEEECTTSCCCSH---HHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEE
T ss_pred CCCEEECCCCcCCCh---HHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccc
Confidence 555555555311110 0001112356677777765543221 24455666554
No 121
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=96.54 E-value=0.00021 Score=58.79 Aligned_cols=35 Identities=20% Similarity=0.196 Sum_probs=19.0
Q ss_pred cCCchhhhhhhccC--CCcchHHHHHhcCCccceeEEeeeec
Q 047191 145 CFPNVKILTMQLES--PDNILTEKLFCSCPSLEELSIQAYLN 184 (341)
Q Consensus 145 ~~~~L~~L~~~L~~--~~~~~l~~ll~~cp~Le~L~L~~c~~ 184 (341)
.+++|+.| +|.+ ++. +. .+.+++.|+.|.+.++.-
T Consensus 46 ~l~~L~~L--~ls~n~l~~--l~-~~~~l~~L~~L~l~~n~l 82 (198)
T 1ds9_A 46 TLKACKHL--ALSTNNIEK--IS-SLSGMENLRILSLGRNLI 82 (198)
T ss_dssp HTTTCSEE--ECSEEEESC--CC-CHHHHTTCCEEEEEEEEE
T ss_pred cCCCCCEE--ECCCCCCcc--cc-ccccCCCCCEEECCCCCc
Confidence 34555555 5554 222 11 245567777777777654
No 122
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=96.42 E-value=0.00082 Score=55.52 Aligned_cols=14 Identities=21% Similarity=0.178 Sum_probs=6.8
Q ss_pred hcCCccceeEEeee
Q 047191 169 CSCPSLEELSIQAY 182 (341)
Q Consensus 169 ~~cp~Le~L~L~~c 182 (341)
.+++.|+.|++.++
T Consensus 73 ~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 73 NKLTSLTYLNLSTN 86 (208)
T ss_dssp TTCTTCCEEECCSS
T ss_pred CCCCCcCEEECCCC
Confidence 34455555555444
No 123
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=96.40 E-value=0.00067 Score=56.07 Aligned_cols=130 Identities=16% Similarity=0.136 Sum_probs=67.8
Q ss_pred CCchhhhhhhccC--CCcchHHHHHhcCCccceeEEeeeecCCCCceeEEEeCCCcceEEEeeecCccccccCceeEEEe
Q 047191 146 FPNVKILTMQLES--PDNILTEKLFCSCPSLEELSIQAYLNDEGPTTKFVISSSTLKQCTLWVETEGEMFTQAEYKVRIT 223 (341)
Q Consensus 146 ~~~L~~L~~~L~~--~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~l~i~~~sL~~L~i~~c~~~~~~~~~~~~~~~~ 223 (341)
.++|+.| +|.+ ++. .....+.+++.|+.|++.++.-..... ...-..++|+.|++.++.-... .....-.
T Consensus 27 ~~~l~~L--~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~----~~~~~~~ 98 (208)
T 2o6s_A 27 PAQTTYL--DLETNSLKS-LPNGVFDELTSLTQLYLGGNKLQSLPN-GVFNKLTSLTYLNLSTNQLQSL----PNGVFDK 98 (208)
T ss_dssp CTTCSEE--ECCSSCCCC-CCTTTTTTCTTCSEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCCC----CTTTTTT
T ss_pred CCCCcEE--EcCCCccCc-CChhhhcccccCcEEECCCCccCccCh-hhcCCCCCcCEEECCCCcCCcc----CHhHhcC
Confidence 4678888 8877 432 222335778999999998874332110 0001234566666665211000 0000011
Q ss_pred cCCceEEEeeccccCceeecCCCCeeEEEEEEEeCccccCCCccchHHhhcCCCceEEEEecchhhhccccccCCCCCCC
Q 047191 224 APSLERLHIMSDIFGKFVVHDLNSLTDVILDIVYGEWSRVDPNRSIQLLQQLNNTTSLTVSYGVLCALDHAYHKWFPALS 303 (341)
Q Consensus 224 ~p~L~~l~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~L~l~~~~~~~~~~~~~~~~~~f~ 303 (341)
.++|++|.+.+.... . .. ...+..+++++.|.++.+.+..+. ...+..++
T Consensus 99 l~~L~~L~L~~N~l~-----~------------------~~----~~~~~~l~~L~~L~l~~N~l~~~~---~~~~~~l~ 148 (208)
T 2o6s_A 99 LTQLKELALNTNQLQ-----S------------------LP----DGVFDKLTQLKDLRLYQNQLKSVP---DGVFDRLT 148 (208)
T ss_dssp CTTCCEEECCSSCCC-----C------------------CC----TTTTTTCTTCCEEECCSSCCSCCC---TTTTTTCT
T ss_pred ccCCCEEEcCCCcCc-----c------------------cC----HhHhccCCcCCEEECCCCccceeC---HHHhccCC
Confidence 334444444332110 0 00 334567889999999887654321 11234577
Q ss_pred cccEEEEEEc
Q 047191 304 YLQHLEVAVG 313 (341)
Q Consensus 304 ~L~~L~l~~~ 313 (341)
+|++|++..+
T Consensus 149 ~L~~L~l~~N 158 (208)
T 2o6s_A 149 SLQYIWLHDN 158 (208)
T ss_dssp TCCEEECCSC
T ss_pred CccEEEecCC
Confidence 8999999876
No 124
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=96.40 E-value=0.0019 Score=62.07 Aligned_cols=68 Identities=18% Similarity=0.129 Sum_probs=29.7
Q ss_pred cceEEEEeeeeeeccCCCcccCCchhhhhhhccC--CCcchHHHHHhcCCccceeEEeeeecCCCCceeEEEeCCCcceE
Q 047191 125 SVEVLKLMSDFLLKVPAGGTCFPNVKILTMQLES--PDNILTEKLFCSCPSLEELSIQAYLNDEGPTTKFVISSSTLKQC 202 (341)
Q Consensus 125 ~L~~L~L~~~~~l~~~~~~~~~~~L~~L~~~L~~--~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~l~i~~~sL~~L 202 (341)
+|+.|+| .+..+...|... +++|++| +|.+ ++. +. ..+++|+.|++.++.-.+++ . +. .+|+.|
T Consensus 60 ~L~~L~L-s~n~L~~lp~~l-~~~L~~L--~Ls~N~l~~--ip---~~l~~L~~L~Ls~N~l~~ip--~--l~-~~L~~L 125 (571)
T 3cvr_A 60 QFSELQL-NRLNLSSLPDNL-PPQITVL--EITQNALIS--LP---ELPASLEYLDACDNRLSTLP--E--LP-ASLKHL 125 (571)
T ss_dssp TCSEEEC-CSSCCSCCCSCC-CTTCSEE--ECCSSCCSC--CC---CCCTTCCEEECCSSCCSCCC--C--CC-TTCCEE
T ss_pred CccEEEe-CCCCCCccCHhH-cCCCCEE--ECcCCCCcc--cc---cccCCCCEEEccCCCCCCcc--h--hh-cCCCEE
Confidence 4555555 444333222211 3555555 5555 321 11 33455555555555333323 2 11 255555
Q ss_pred EEee
Q 047191 203 TLWV 206 (341)
Q Consensus 203 ~i~~ 206 (341)
.+.+
T Consensus 126 ~Ls~ 129 (571)
T 3cvr_A 126 DVDN 129 (571)
T ss_dssp ECCS
T ss_pred ECCC
Confidence 5555
No 125
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=96.24 E-value=0.0006 Score=61.68 Aligned_cols=38 Identities=18% Similarity=0.055 Sum_probs=20.1
Q ss_pred hcCCCceEEEEecchhhhccccccCCCCCCCc--ccEEEEEEc
Q 047191 273 QQLNNTTSLTVSYGVLCALDHAYHKWFPALSY--LQHLEVAVG 313 (341)
Q Consensus 273 ~~~~~l~~L~l~~~~~~~~~~~~~~~~~~f~~--L~~L~l~~~ 313 (341)
..+++++.|.++.+.+..+....+. .+++ |+.|+|..+
T Consensus 160 ~~l~~L~~L~L~~N~l~~l~~~~~~---~l~~~~l~~l~l~~N 199 (361)
T 2xot_A 160 NKLPKLMLLDLSSNKLKKLPLTDLQ---KLPAWVKNGLYLHNN 199 (361)
T ss_dssp --CTTCCEEECCSSCCCCCCHHHHH---HSCHHHHTTEECCSS
T ss_pred ccCCcCCEEECCCCCCCccCHHHhh---hccHhhcceEEecCC
Confidence 4577888888877665433211111 2333 366777765
No 126
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=96.17 E-value=0.00075 Score=65.36 Aligned_cols=105 Identities=22% Similarity=0.194 Sum_probs=48.7
Q ss_pred cCCceEEEeeccccCce---eecCCCCeeEEEEEEEeCccccCCCccchHHhhcCCCceEEEEecchhhhccccccCCCC
Q 047191 224 APSLERLHIMSDIFGKF---VVHDLNSLTDVILDIVYGEWSRVDPNRSIQLLQQLNNTTSLTVSYGVLCALDHAYHKWFP 300 (341)
Q Consensus 224 ~p~L~~l~~~~~~~~~~---~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~L~l~~~~~~~~~~~~~~~~~ 300 (341)
.++|++|++++.....+ .+.++++|+.+++.-..-.. . ....+.++++++.|.++.+.+..+. ...+.
T Consensus 75 l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~--l----~~~~f~~L~~L~~L~Ls~N~l~~l~---~~~~~ 145 (635)
T 4g8a_A 75 FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS--L----ALGAFSGLSSLQKLVAVETNLASLE---NFPIG 145 (635)
T ss_dssp CTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE--E----CGGGGTTCTTCCEEECTTSCCCCST---TCCCT
T ss_pred CCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCC--C----CHHHhcCCCCCCEEECCCCcCCCCC---hhhhh
Confidence 45666666655433322 24455566655543111000 0 0344556666666666655443221 11123
Q ss_pred CCCcccEEEEEEcCCChhHHHHHHhcCCCCCcEEEee
Q 047191 301 ALSYLQHLEVAVGAIGWAVLPVILSSSVHLQSLVLRK 337 (341)
Q Consensus 301 ~f~~L~~L~l~~~~~~~~~l~~ll~~cp~L~~L~l~~ 337 (341)
.+++|++|++..+......+..++..+++|+.|.+.+
T Consensus 146 ~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~ 182 (635)
T 4g8a_A 146 HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS 182 (635)
T ss_dssp TCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCS
T ss_pred cCcccCeeccccCccccCCCchhhccchhhhhhcccC
Confidence 4556666666655211111223455566666666554
No 127
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=96.15 E-value=0.00082 Score=56.28 Aligned_cols=51 Identities=18% Similarity=0.117 Sum_probs=30.0
Q ss_pred hhcCCCceEEEEecchhhhccccccCCCCCCCcccEEEEEEc----CCChhHHHHHHh
Q 047191 272 LQQLNNTTSLTVSYGVLCALDHAYHKWFPALSYLQHLEVAVG----AIGWAVLPVILS 325 (341)
Q Consensus 272 l~~~~~l~~L~l~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~----~~~~~~l~~ll~ 325 (341)
+..+++++.|.++.+.+..+. ...+..+++|+.|++..+ .....++...++
T Consensus 125 ~~~l~~L~~L~L~~N~l~~~~---~~~~~~l~~L~~L~L~~N~l~c~c~l~~l~~~~~ 179 (220)
T 2v70_A 125 FIGLSSVRLLSLYDNQITTVA---PGAFDTLHSLSTLNLLANPFNCNCYLAWLGEWLR 179 (220)
T ss_dssp STTCTTCSEEECTTSCCCCBC---TTTTTTCTTCCEEECCSCCEECSGGGHHHHHHHH
T ss_pred cCCCccCCEEECCCCcCCEEC---HHHhcCCCCCCEEEecCcCCcCCCchHHHHHHHH
Confidence 446678888888776554331 122335678888888876 223345555444
No 128
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=96.03 E-value=0.0016 Score=58.55 Aligned_cols=38 Identities=16% Similarity=0.176 Sum_probs=23.4
Q ss_pred hHHhhcCCCceEEEEecchhhhccccccCCCCCCCcccEEEEEE
Q 047191 269 IQLLQQLNNTTSLTVSYGVLCALDHAYHKWFPALSYLQHLEVAV 312 (341)
Q Consensus 269 ~~~l~~~~~l~~L~l~~~~~~~~~~~~~~~~~~f~~L~~L~l~~ 312 (341)
...+.++++++.|.++.+.+..+.. ..|.+|++|.+..
T Consensus 195 ~~~f~~l~~L~~LdLs~N~l~~lp~------~~~~~L~~L~~l~ 232 (350)
T 4ay9_X 195 NDVFHGASGPVILDISRTRIHSLPS------YGLENLKKLRARS 232 (350)
T ss_dssp TTTTTTEECCSEEECTTSCCCCCCS------SSCTTCCEEECTT
T ss_pred HHHhccCcccchhhcCCCCcCccCh------hhhccchHhhhcc
Confidence 4556788999999998876543311 0345555555433
No 129
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=95.81 E-value=0.0045 Score=51.69 Aligned_cols=103 Identities=17% Similarity=0.140 Sum_probs=61.5
Q ss_pred cCCceEEEeeccccCce---eecCCCCeeEEEEEEEeCccccCCCccchHHhhcCCCceEEEEecchhhhccccccCCCC
Q 047191 224 APSLERLHIMSDIFGKF---VVHDLNSLTDVILDIVYGEWSRVDPNRSIQLLQQLNNTTSLTVSYGVLCALDHAYHKWFP 300 (341)
Q Consensus 224 ~p~L~~l~~~~~~~~~~---~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~L~l~~~~~~~~~~~~~~~~~ 300 (341)
.++|++|.+++...... .+.++++|+.+++.-..... +. ...+.++++++.|.++.+.+..+. ...+.
T Consensus 55 l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~--l~----~~~f~~l~~L~~L~L~~N~l~~~~---~~~~~ 125 (220)
T 2v9t_B 55 YKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITE--LP----KSLFEGLFSLQLLLLNANKINCLR---VDAFQ 125 (220)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCC--CC----TTTTTTCTTCCEEECCSSCCCCCC---TTTTT
T ss_pred CCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCc--cC----HhHccCCCCCCEEECCCCCCCEeC---HHHcC
Confidence 35666666665543322 24556666666553211110 10 445678899999999988765431 12344
Q ss_pred CCCcccEEEEEEcC-CChhHHHHHHhcCCCCCcEEEee
Q 047191 301 ALSYLQHLEVAVGA-IGWAVLPVILSSSVHLQSLVLRK 337 (341)
Q Consensus 301 ~f~~L~~L~l~~~~-~~~~~l~~ll~~cp~L~~L~l~~ 337 (341)
.+++|++|+|..+. .... ...+..+++|+.|++.+
T Consensus 126 ~l~~L~~L~L~~N~l~~~~--~~~~~~l~~L~~L~L~~ 161 (220)
T 2v9t_B 126 DLHNLNLLSLYDNKLQTIA--KGTFSPLRAIQTMHLAQ 161 (220)
T ss_dssp TCTTCCEEECCSSCCSCCC--TTTTTTCTTCCEEECCS
T ss_pred CCCCCCEEECCCCcCCEEC--HHHHhCCCCCCEEEeCC
Confidence 67899999998872 1111 13466789999998865
No 130
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=95.68 E-value=0.026 Score=50.02 Aligned_cols=99 Identities=12% Similarity=0.120 Sum_probs=58.0
Q ss_pred cCCceEEEeeccccC---ceeecCCCCeeEEEEEEEeCccccCCCccchHHhhcCCCce-EEEEecchhhhccccccCCC
Q 047191 224 APSLERLHIMSDIFG---KFVVHDLNSLTDVILDIVYGEWSRVDPNRSIQLLQQLNNTT-SLTVSYGVLCALDHAYHKWF 299 (341)
Q Consensus 224 ~p~L~~l~~~~~~~~---~~~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~-~L~l~~~~~~~~~~~~~~~~ 299 (341)
+++|+++.+.+.... ...+.++.+|+++.+.-. -.... ...+.++++++ .+.+.. .+..+. ...+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n---i~~I~----~~aF~~~~~L~~~l~l~~-~l~~I~---~~aF 293 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN---LKTIG----QRVFSNCGRLAGTLELPA-SVTAIE---FGAF 293 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT---CCEEC----TTTTTTCTTCCEEEEECT-TCCEEC---TTTT
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc---cceeh----HHHhhCChhccEEEEEcc-cceEEc---hhhh
Confidence 678888888764332 234677888888766321 00011 55567888888 888876 322221 1223
Q ss_pred CCCCcccEEEEEEc-CCChhHHHHHHhcCCCCCcEEE
Q 047191 300 PALSYLQHLEVAVG-AIGWAVLPVILSSSVHLQSLVL 335 (341)
Q Consensus 300 ~~f~~L~~L~l~~~-~~~~~~l~~ll~~cp~L~~L~l 335 (341)
..+++|+++.+..+ -.... ...+..|++|+.+..
T Consensus 294 ~~c~~L~~l~l~~n~i~~I~--~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 294 MGCDNLRYVLATGDKITTLG--DELFGNGVPSKLIYK 328 (329)
T ss_dssp TTCTTEEEEEECSSCCCEEC--TTTTCTTCCCCEEEC
T ss_pred hCCccCCEEEeCCCccCccc--hhhhcCCcchhhhcc
Confidence 36678888887544 11111 124678899988753
No 131
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=95.60 E-value=0.0048 Score=55.65 Aligned_cols=151 Identities=15% Similarity=0.053 Sum_probs=80.2
Q ss_pred CCccceeEEeeeecCCCCceeEEEeCCCcceEEEeeecCccccccCceeEE----EecCCceEEEeeccccCce---eec
Q 047191 171 CPSLEELSIQAYLNDEGPTTKFVISSSTLKQCTLWVETEGEMFTQAEYKVR----ITAPSLERLHIMSDIFGKF---VVH 243 (341)
Q Consensus 171 cp~Le~L~L~~c~~~~~~~~~l~i~~~sL~~L~i~~c~~~~~~~~~~~~~~----~~~p~L~~l~~~~~~~~~~---~~~ 243 (341)
.+.++.|+|.+..-..+....+.-..++|+.|.+..+. ...+. -..++|++|.+++.....+ .+.
T Consensus 38 ~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~--------i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 109 (361)
T 2xot_A 38 PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNH--------LNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFS 109 (361)
T ss_dssp CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSC--------CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTT
T ss_pred CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCc--------CCccChhhccCCCCCCEEECCCCcCCcCCHHHhC
Confidence 35688888887643211100111145678888888731 11111 1357888888887655433 256
Q ss_pred CCCCeeEEEEEEEeCccccCCCccchHHhhcCCCceEEEEecchhhhccccccCCCCCCCcccEEEEEEcCC-ChhHHHH
Q 047191 244 DLNSLTDVILDIVYGEWSRVDPNRSIQLLQQLNNTTSLTVSYGVLCALDHAYHKWFPALSYLQHLEVAVGAI-GWAVLPV 322 (341)
Q Consensus 244 ~~~~L~~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~L~l~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~-~~~~l~~ 322 (341)
.+++|+.+++.-..... .. ...+..+++++.|.++.+.+..+..........+++|+.|+|..+.. ... ..
T Consensus 110 ~l~~L~~L~L~~N~i~~--~~----~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~--~~ 181 (361)
T 2xot_A 110 DLQALEVLLLYNNHIVV--VD----RNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLP--LT 181 (361)
T ss_dssp TCTTCCEEECCSSCCCE--EC----TTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCC--HH
T ss_pred CCcCCCEEECCCCcccE--EC----HHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccC--HH
Confidence 67778777664211110 00 34456778888888887765543211111113467888888887621 111 12
Q ss_pred HHhcCCC--CCcEEEee
Q 047191 323 ILSSSVH--LQSLVLRK 337 (341)
Q Consensus 323 ll~~cp~--L~~L~l~~ 337 (341)
.+...|+ |+.|.+.+
T Consensus 182 ~~~~l~~~~l~~l~l~~ 198 (361)
T 2xot_A 182 DLQKLPAWVKNGLYLHN 198 (361)
T ss_dssp HHHHSCHHHHTTEECCS
T ss_pred HhhhccHhhcceEEecC
Confidence 3444555 36666654
No 132
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=95.51 E-value=0.042 Score=49.55 Aligned_cols=62 Identities=16% Similarity=0.133 Sum_probs=36.6
Q ss_pred cCCCceEEEEecch--------hhhccccccCCCCCCCcccEEEEEEcCCChhHHHHHHh--cCCCCCcEEEee
Q 047191 274 QLNNTTSLTVSYGV--------LCALDHAYHKWFPALSYLQHLEVAVGAIGWAVLPVILS--SSVHLQSLVLRK 337 (341)
Q Consensus 274 ~~~~l~~L~l~~~~--------~~~~~~~~~~~~~~f~~L~~L~l~~~~~~~~~l~~ll~--~cp~L~~L~l~~ 337 (341)
.+++++.|.|+... .+.+ ...-....||+|++|.+..+.........+.+ .+|+|++|+|..
T Consensus 217 ~lp~L~~L~L~~~~~~~~~~~~~~~l--~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~ 288 (362)
T 2ra8_A 217 DLPNLEKLVLYVGVEDYGFDGDMNVF--RPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISA 288 (362)
T ss_dssp BCTTCCEEEEECBCGGGTCCSCGGGT--GGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCS
T ss_pred cCCCCcEEEEeccccccccchhHHHH--HHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCC
Confidence 57888888875311 1111 01111125889999999987444333333333 468999999864
No 133
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=95.45 E-value=0.0039 Score=52.03 Aligned_cols=103 Identities=16% Similarity=0.218 Sum_probs=63.4
Q ss_pred cCCceEEEeeccccCce---eecCCCCeeEEEEEEEeCccccCCCccchHHhhcCCCceEEEEecchhhhccccccCCCC
Q 047191 224 APSLERLHIMSDIFGKF---VVHDLNSLTDVILDIVYGEWSRVDPNRSIQLLQQLNNTTSLTVSYGVLCALDHAYHKWFP 300 (341)
Q Consensus 224 ~p~L~~l~~~~~~~~~~---~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~L~l~~~~~~~~~~~~~~~~~ 300 (341)
.++|++|.+.+.....+ .+..+++|+.+++.-..... .. ...+..+++++.|.++.+.+..+. ...+.
T Consensus 56 l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~--~~----~~~~~~l~~L~~L~Ls~N~l~~~~---~~~~~ 126 (220)
T 2v70_A 56 LPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLEN--VQ----HKMFKGLESLKTLMLRSNRITCVG---NDSFI 126 (220)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCC--CC----GGGGTTCSSCCEEECTTSCCCCBC---TTSST
T ss_pred CCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCc--cC----HhHhcCCcCCCEEECCCCcCCeEC---HhHcC
Confidence 56677777665543322 25566777766654221111 00 455678999999999988765431 12234
Q ss_pred CCCcccEEEEEEcC-CChhHHHHHHhcCCCCCcEEEee
Q 047191 301 ALSYLQHLEVAVGA-IGWAVLPVILSSSVHLQSLVLRK 337 (341)
Q Consensus 301 ~f~~L~~L~l~~~~-~~~~~l~~ll~~cp~L~~L~l~~ 337 (341)
.+++|++|+|..+. .+.. ...+..+++|+.|.+.+
T Consensus 127 ~l~~L~~L~L~~N~l~~~~--~~~~~~l~~L~~L~L~~ 162 (220)
T 2v70_A 127 GLSSVRLLSLYDNQITTVA--PGAFDTLHSLSTLNLLA 162 (220)
T ss_dssp TCTTCSEEECTTSCCCCBC--TTTTTTCTTCCEEECCS
T ss_pred CCccCCEEECCCCcCCEEC--HHHhcCCCCCCEEEecC
Confidence 67899999998862 1111 23466789999998875
No 134
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=95.01 E-value=0.00049 Score=56.06 Aligned_cols=70 Identities=14% Similarity=0.135 Sum_probs=36.5
Q ss_pred hHHhhcCCCceEEEEecchhhhcccc-ccCCCCCCCcccEEEE--EEcCCCh---hHHHHHHhcCCCCCcEEEeee
Q 047191 269 IQLLQQLNNTTSLTVSYGVLCALDHA-YHKWFPALSYLQHLEV--AVGAIGW---AVLPVILSSSVHLQSLVLRKV 338 (341)
Q Consensus 269 ~~~l~~~~~l~~L~l~~~~~~~~~~~-~~~~~~~f~~L~~L~l--~~~~~~~---~~l~~ll~~cp~L~~L~l~~~ 338 (341)
...+...++++.|.|+.+.+..-... -...+...++|++|+| ..+..+. ..+...++.++.|+.|++.+-
T Consensus 86 ~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n 161 (185)
T 1io0_A 86 AEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT 161 (185)
T ss_dssp HHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred HHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence 33344455666666665543211000 0111223446777777 4443333 346667777788888877653
No 135
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=95.01 E-value=0.0076 Score=50.55 Aligned_cols=125 Identities=18% Similarity=0.106 Sum_probs=77.5
Q ss_pred CCcceEEEeeecCccccccCceeEEEecCCceEEEeeccccCce---eecCCCCeeEEEEEEEeCccccCCCccchHHhh
Q 047191 197 STLKQCTLWVETEGEMFTQAEYKVRITAPSLERLHIMSDIFGKF---VVHDLNSLTDVILDIVYGEWSRVDPNRSIQLLQ 273 (341)
Q Consensus 197 ~sL~~L~i~~c~~~~~~~~~~~~~~~~~p~L~~l~~~~~~~~~~---~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~l~ 273 (341)
++|+.|.+.++.-... .....-..++|++|.+.+.....+ .+..+++|+.+++.-..... .. ...+.
T Consensus 40 ~~L~~L~Ls~n~i~~~----~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~--l~----~~~~~ 109 (229)
T 3e6j_A 40 TNAQILYLHDNQITKL----EPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTV--LP----SAVFD 109 (229)
T ss_dssp TTCSEEECCSSCCCCC----CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC--CC----TTTTT
T ss_pred CCCCEEEcCCCccCcc----CHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCc--cC----hhHhC
Confidence 6799999988421111 000011368899999987765433 25677888887764321111 10 44566
Q ss_pred cCCCceEEEEecchhhhccccccCCCCCCCcccEEEEEEcC-CChhHHHHHHhcCCCCCcEEEee
Q 047191 274 QLNNTTSLTVSYGVLCALDHAYHKWFPALSYLQHLEVAVGA-IGWAVLPVILSSSVHLQSLVLRK 337 (341)
Q Consensus 274 ~~~~l~~L~l~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~-~~~~~l~~ll~~cp~L~~L~l~~ 337 (341)
.+++++.|.++.+.+..+. ..+..+++|++|++..+. .... ...+..+++|+.|.+.+
T Consensus 110 ~l~~L~~L~Ls~N~l~~lp----~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~l~~L~~L~l~~ 168 (229)
T 3e6j_A 110 RLVHLKELFMCCNKLTELP----RGIERLTHLTHLALDQNQLKSIP--HGAFDRLSSLTHAYLFG 168 (229)
T ss_dssp TCTTCCEEECCSSCCCSCC----TTGGGCTTCSEEECCSSCCCCCC--TTTTTTCTTCCEEECTT
T ss_pred cchhhCeEeccCCcccccC----cccccCCCCCEEECCCCcCCccC--HHHHhCCCCCCEEEeeC
Confidence 8899999999887765331 112367789999998872 1221 14567889999998865
No 136
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=94.92 E-value=0.0045 Score=52.02 Aligned_cols=120 Identities=19% Similarity=0.123 Sum_probs=67.0
Q ss_pred CcceEEEEeeeeeeccC-C-CcccCCchhhhhhhccC--CCcchHHHHHhcCCccceeEEeeeecCCCCceeEEEeCCCc
Q 047191 124 PSVEVLKLMSDFLLKVP-A-GGTCFPNVKILTMQLES--PDNILTEKLFCSCPSLEELSIQAYLNDEGPTTKFVISSSTL 199 (341)
Q Consensus 124 ~~L~~L~L~~~~~l~~~-~-~~~~~~~L~~L~~~L~~--~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~l~i~~~sL 199 (341)
++|+.|+| ++..+... + ....+++|+.| +|.+ ++.-. ...+.++++|+.|+|.++.-..+.. ...-..++|
T Consensus 40 ~~L~~L~L-s~n~i~~~~~~~~~~l~~L~~L--~L~~N~l~~i~-~~~~~~l~~L~~L~Ls~N~l~~l~~-~~~~~l~~L 114 (229)
T 3e6j_A 40 TNAQILYL-HDNQITKLEPGVFDSLINLKEL--YLGSNQLGALP-VGVFDSLTQLTVLDLGTNQLTVLPS-AVFDRLVHL 114 (229)
T ss_dssp TTCSEEEC-CSSCCCCCCTTTTTTCTTCCEE--ECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTC
T ss_pred CCCCEEEc-CCCccCccCHHHhhCccCCcEE--ECCCCCCCCcC-hhhcccCCCcCEEECCCCcCCccCh-hHhCcchhh
Confidence 67888888 65555332 2 24467788888 7777 32211 1235677888888887764322210 001134677
Q ss_pred ceEEEeeecCccccccCceeEEEecCCceEEEeeccccCce---eecCCCCeeEEEE
Q 047191 200 KQCTLWVETEGEMFTQAEYKVRITAPSLERLHIMSDIFGKF---VVHDLNSLTDVIL 253 (341)
Q Consensus 200 ~~L~i~~c~~~~~~~~~~~~~~~~~p~L~~l~~~~~~~~~~---~~~~~~~L~~~~l 253 (341)
+.|.+.++.-... ... ....++|++|.+.+.....+ .+..+++|+.+.+
T Consensus 115 ~~L~Ls~N~l~~l----p~~-~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l 166 (229)
T 3e6j_A 115 KELFMCCNKLTEL----PRG-IERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYL 166 (229)
T ss_dssp CEEECCSSCCCSC----CTT-GGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CeEeccCCccccc----Ccc-cccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEe
Confidence 8887777311111 000 12467888888877654433 2556677776655
No 137
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=94.84 E-value=0.0044 Score=55.67 Aligned_cols=80 Identities=14% Similarity=0.128 Sum_probs=41.3
Q ss_pred CcceEEEEeeeeeecc-CC-CcccCCchhhhhhhccC--CCcchHHHHHhcCCccceeEEeeeecCC-CCceeEEEeCCC
Q 047191 124 PSVEVLKLMSDFLLKV-PA-GGTCFPNVKILTMQLES--PDNILTEKLFCSCPSLEELSIQAYLNDE-GPTTKFVISSST 198 (341)
Q Consensus 124 ~~L~~L~L~~~~~l~~-~~-~~~~~~~L~~L~~~L~~--~~~~~l~~ll~~cp~Le~L~L~~c~~~~-~~~~~l~i~~~s 198 (341)
+++++|+| ++..+.. ++ ...++++|++| +|.+ +.+.-=...+.+++.|+++.+.++.... +. +...-..++
T Consensus 30 ~~l~~L~L-s~N~i~~i~~~~f~~l~~L~~L--~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~-~~~f~~l~~ 105 (350)
T 4ay9_X 30 RNAIELRF-VLTKLRVIQKGAFSGFGDLEKI--EISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYIN-PEAFQNLPN 105 (350)
T ss_dssp TTCSEEEE-ESCCCSEECTTSSTTCTTCCEE--EEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEEC-TTSBCCCTT
T ss_pred CCCCEEEc-cCCcCCCcCHHHHcCCCCCCEE--ECcCCCCCCccChhHhhcchhhhhhhcccCCcccccC-chhhhhccc
Confidence 46777888 5544433 32 24567778888 7766 3221111235566777766665553321 00 000113456
Q ss_pred cceEEEeee
Q 047191 199 LKQCTLWVE 207 (341)
Q Consensus 199 L~~L~i~~c 207 (341)
|+.|.+.++
T Consensus 106 L~~L~l~~n 114 (350)
T 4ay9_X 106 LQYLLISNT 114 (350)
T ss_dssp CCEEEEEEE
T ss_pred ccccccccc
Confidence 777777763
No 138
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=94.77 E-value=0.00046 Score=62.82 Aligned_cols=72 Identities=19% Similarity=0.042 Sum_probs=49.2
Q ss_pred hHHhhcCCCceEEEEecchhhhccccc-cCCCCCCCcccEEEEEEcCCCh---hHHHHHHhcCCCCCcEEEeeeee
Q 047191 269 IQLLQQLNNTTSLTVSYGVLCALDHAY-HKWFPALSYLQHLEVAVGAIGW---AVLPVILSSSVHLQSLVLRKVII 340 (341)
Q Consensus 269 ~~~l~~~~~l~~L~l~~~~~~~~~~~~-~~~~~~f~~L~~L~l~~~~~~~---~~l~~ll~~cp~L~~L~l~~~~~ 340 (341)
...+...++++.|.|+.+.+....... ...+...++|++|+|..+..+. ..+...++.+|+|+.|++.+-.|
T Consensus 176 ~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i 251 (372)
T 3un9_A 176 MEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNEL 251 (372)
T ss_dssp HHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSC
T ss_pred HHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCC
Confidence 445577899999999987654321111 1122345689999999985444 45667788899999999876443
No 139
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=94.65 E-value=0.011 Score=47.11 Aligned_cols=104 Identities=15% Similarity=0.116 Sum_probs=57.0
Q ss_pred CCcceEEEeeecCccccccCceeEEEecCCceEEEeeccccCcee---ecCCCCeeEEEEEEEeCccccCCCccchHHhh
Q 047191 197 STLKQCTLWVETEGEMFTQAEYKVRITAPSLERLHIMSDIFGKFV---VHDLNSLTDVILDIVYGEWSRVDPNRSIQLLQ 273 (341)
Q Consensus 197 ~sL~~L~i~~c~~~~~~~~~~~~~~~~~p~L~~l~~~~~~~~~~~---~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~l~ 273 (341)
++|+.|.+.++.-... ....--..++|++|.+.+.....+. +..+++|+.+++.-..... +. ...+.
T Consensus 28 ~~l~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~--~~----~~~~~ 97 (177)
T 2o6r_A 28 SSATRLELESNKLQSL----PHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQS--LP----NGVFD 97 (177)
T ss_dssp TTCSEEECCSSCCCCC----CTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC--CC----TTTTT
T ss_pred CCCcEEEeCCCcccEe----CHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccc--cC----HHHhh
Confidence 5788888887321111 0000013578888888776544321 4566777776654221111 00 33456
Q ss_pred cCCCceEEEEecchhhhccccccCCCCCCCcccEEEEEEc
Q 047191 274 QLNNTTSLTVSYGVLCALDHAYHKWFPALSYLQHLEVAVG 313 (341)
Q Consensus 274 ~~~~l~~L~l~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~ 313 (341)
.+++++.|.++.+.+..+. ...+..+++|++|++..+
T Consensus 98 ~l~~L~~L~l~~N~l~~~~---~~~~~~l~~L~~L~l~~N 134 (177)
T 2o6r_A 98 KLTQLKELALDTNQLKSVP---DGIFDRLTSLQKIWLHTN 134 (177)
T ss_dssp TCTTCCEEECCSSCCSCCC---TTTTTTCTTCCEEECCSS
T ss_pred CCcccCEEECcCCcceEeC---HHHhcCCcccCEEEecCC
Confidence 7788888888776554321 111235667888888776
No 140
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=94.58 E-value=0.024 Score=50.28 Aligned_cols=96 Identities=9% Similarity=0.069 Sum_probs=56.2
Q ss_pred CCCcceEEEeeecCccccccCceeEE----EecCCceEEEeecccc--CceeecCCCCee-EEEEEEEeCccccCCCccc
Q 047191 196 SSTLKQCTLWVETEGEMFTQAEYKVR----ITAPSLERLHIMSDIF--GKFVVHDLNSLT-DVILDIVYGEWSRVDPNRS 268 (341)
Q Consensus 196 ~~sL~~L~i~~c~~~~~~~~~~~~~~----~~~p~L~~l~~~~~~~--~~~~~~~~~~L~-~~~l~~~~~~~~~~~~~~~ 268 (341)
+++|+.|++..+. ...+. -.+++|+++.+.+... ....+.++++|+ .+.+.-... ..+
T Consensus 225 ~~~L~~l~L~~n~--------i~~I~~~aF~~~~~L~~l~l~~ni~~I~~~aF~~~~~L~~~l~l~~~l~---~I~---- 289 (329)
T 3sb4_A 225 MPNLVSLDISKTN--------ATTIPDFTFAQKKYLLKIKLPHNLKTIGQRVFSNCGRLAGTLELPASVT---AIE---- 289 (329)
T ss_dssp CTTCCEEECTTBC--------CCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEEEECTTCC---EEC----
T ss_pred cCCCeEEECCCCC--------cceecHhhhhCCCCCCEEECCcccceehHHHhhCChhccEEEEEcccce---EEc----
Confidence 5677777776521 11111 1267888888876421 123478888898 877742100 011
Q ss_pred hHHhhcCCCceEEEEecchhhhccccccCCCCCCCcccEEE
Q 047191 269 IQLLQQLNNTTSLTVSYGVLCALDHAYHKWFPALSYLQHLE 309 (341)
Q Consensus 269 ~~~l~~~~~l~~L~l~~~~~~~~~~~~~~~~~~f~~L~~L~ 309 (341)
...+.++++++.+.+..+.+..+... .+..+++|+.++
T Consensus 290 ~~aF~~c~~L~~l~l~~n~i~~I~~~---aF~~~~~L~~ly 327 (329)
T 3sb4_A 290 FGAFMGCDNLRYVLATGDKITTLGDE---LFGNGVPSKLIY 327 (329)
T ss_dssp TTTTTTCTTEEEEEECSSCCCEECTT---TTCTTCCCCEEE
T ss_pred hhhhhCCccCCEEEeCCCccCccchh---hhcCCcchhhhc
Confidence 55677899999999977665544222 233566777764
No 141
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=94.15 E-value=0.011 Score=48.15 Aligned_cols=53 Identities=19% Similarity=0.144 Sum_probs=27.2
Q ss_pred eEEEEeeeeeeccCCCcccCCchhhhhhhccC--CCcchHHHHHhcCCccceeEEeeee
Q 047191 127 EVLKLMSDFLLKVPAGGTCFPNVKILTMQLES--PDNILTEKLFCSCPSLEELSIQAYL 183 (341)
Q Consensus 127 ~~L~L~~~~~l~~~~~~~~~~~L~~L~~~L~~--~~~~~l~~ll~~cp~Le~L~L~~c~ 183 (341)
+.+++ ++..+...|... +++|+.| .|.+ ++.-.-..++...+.|+.|+|.++.
T Consensus 11 ~~l~~-s~~~l~~ip~~~-~~~l~~L--~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~ 65 (192)
T 1w8a_A 11 TTVDC-TGRGLKEIPRDI-PLHTTEL--LLNDNELGRISSDGLFGRLPHLVKLELKRNQ 65 (192)
T ss_dssp TEEEC-TTSCCSSCCSCC-CTTCSEE--ECCSCCCCSBCCSCSGGGCTTCCEEECCSSC
T ss_pred CEEEc-CCCCcCcCccCC-CCCCCEE--ECCCCcCCccCCccccccCCCCCEEECCCCC
Confidence 45555 444444332221 2467777 6666 3322222235566777777776654
No 142
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=94.03 E-value=0.042 Score=50.34 Aligned_cols=55 Identities=16% Similarity=0.221 Sum_probs=26.1
Q ss_pred cCCceEEEeeccccC--------ceeecCCCCeeEEEEEEEeCccccCCCccchHHhhcCCCceEEEEec
Q 047191 224 APSLERLHIMSDIFG--------KFVVHDLNSLTDVILDIVYGEWSRVDPNRSIQLLQQLNNTTSLTVSY 285 (341)
Q Consensus 224 ~p~L~~l~~~~~~~~--------~~~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~L~l~~ 285 (341)
+++|+++.+.+.... ...+.++++|+.+.+.- ...... ...+.++++++.+.|..
T Consensus 270 c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~---~i~~I~----~~aF~~c~~L~~l~lp~ 332 (401)
T 4fdw_A 270 CPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE---SIRILG----QGLLGGNRKVTQLTIPA 332 (401)
T ss_dssp CTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT---TCCEEC----TTTTTTCCSCCEEEECT
T ss_pred CCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC---ceEEEh----hhhhcCCCCccEEEECc
Confidence 556666666543221 12355566666554420 000000 34455666666666643
No 143
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=94.02 E-value=0.019 Score=46.72 Aligned_cols=116 Identities=14% Similarity=0.084 Sum_probs=67.6
Q ss_pred CCcceEEEeeecCccccccCceeEEEecCCceEEEeeccccCce---eecCCCCeeEEEEEEEeCccccCCCccchHHhh
Q 047191 197 STLKQCTLWVETEGEMFTQAEYKVRITAPSLERLHIMSDIFGKF---VVHDLNSLTDVILDIVYGEWSRVDPNRSIQLLQ 273 (341)
Q Consensus 197 ~sL~~L~i~~c~~~~~~~~~~~~~~~~~p~L~~l~~~~~~~~~~---~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~l~ 273 (341)
++|+.|.+.++.-.. ........++|++|.+++.....+ .+.++++|+.+++.-..... .. ...+.
T Consensus 31 ~~l~~L~L~~n~i~~-----ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~--i~----~~~f~ 99 (193)
T 2wfh_A 31 RDVTELYLDGNQFTL-----VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRC--IP----PRTFD 99 (193)
T ss_dssp TTCCEEECCSSCCCS-----CCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCB--CC----TTTTT
T ss_pred CCCCEEECCCCcCch-----hHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCE--eC----HHHhC
Confidence 578888888731111 111112357899999887665433 25677888877664321111 00 33466
Q ss_pred cCCCceEEEEecchhhhccccccCCCCCCCcccEEEEEEc----CCChhHHHHHHhc
Q 047191 274 QLNNTTSLTVSYGVLCALDHAYHKWFPALSYLQHLEVAVG----AIGWAVLPVILSS 326 (341)
Q Consensus 274 ~~~~l~~L~l~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~----~~~~~~l~~ll~~ 326 (341)
++++++.|.++.+.+..+.. ..+..+++|+.|++..+ .....++...++.
T Consensus 100 ~l~~L~~L~L~~N~l~~~~~---~~~~~l~~L~~L~L~~N~~~C~c~l~~l~~~~~~ 153 (193)
T 2wfh_A 100 GLKSLRLLSLHGNDISVVPE---GAFNDLSALSHLAIGANPLYCDCNMQWLSDWVKS 153 (193)
T ss_dssp TCTTCCEEECCSSCCCBCCT---TTTTTCTTCCEEECCSSCEECSGGGHHHHHHHHH
T ss_pred CCCCCCEEECCCCCCCeeCh---hhhhcCccccEEEeCCCCeecCCcCHHHHHHHHh
Confidence 78889999998876653311 12335678888888876 2334555555543
No 144
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=93.46 E-value=0.045 Score=44.14 Aligned_cols=24 Identities=8% Similarity=0.239 Sum_probs=14.7
Q ss_pred cchHHHHHHHHhcCCCCE-EEEEEE
Q 047191 65 MPGFEDFIERVLTGTQPM-NITIFF 88 (341)
Q Consensus 65 ~~~~~~~v~~~l~~~~~i-~l~l~~ 88 (341)
...+.+.+.+++.....+ .+.+..
T Consensus 21 ~~~~~~~l~~~l~~~~~L~~L~L~~ 45 (185)
T 1io0_A 21 STDVEETLKRIQNNDPDLEEVNLNN 45 (185)
T ss_dssp CCCHHHHHHHHHTTCTTCCEEECTT
T ss_pred ccHHHHHHHHHHhcCCCCCEEEecC
Confidence 344556666666666667 766654
No 145
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=93.00 E-value=0.031 Score=51.17 Aligned_cols=102 Identities=6% Similarity=0.015 Sum_probs=48.1
Q ss_pred CceEEEeecccc--CceeecCCCCeeEEEEEEEeCccccCCCccchHHhhcCCCceEEEEecchhhhccccccCCCCCCC
Q 047191 226 SLERLHIMSDIF--GKFVVHDLNSLTDVILDIVYGEWSRVDPNRSIQLLQQLNNTTSLTVSYGVLCALDHAYHKWFPALS 303 (341)
Q Consensus 226 ~L~~l~~~~~~~--~~~~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~L~l~~~~~~~~~~~~~~~~~~f~ 303 (341)
+|+++.+..... ....+.++++|+.+.+.-........... ....+.++++++.+.+... ++.+. ...+..+.
T Consensus 249 ~L~~i~lp~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I-~~~aF~~c~~L~~l~l~~~-i~~I~---~~aF~~c~ 323 (401)
T 4fdw_A 249 GITTVKLPNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMI-HPYCLEGCPKLARFEIPES-IRILG---QGLLGGNR 323 (401)
T ss_dssp CCSEEEEETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEE-CTTTTTTCTTCCEECCCTT-CCEEC---TTTTTTCC
T ss_pred CccEEEeCCCccEEChhHhhCCCCCCEEEeCCccccCCcccEE-CHHHhhCCccCCeEEeCCc-eEEEh---hhhhcCCC
Confidence 455555533221 12235666777766653211100000000 0445566777777776532 22221 11223456
Q ss_pred cccEEEEEEc--CCChhHHHHHHhcCCCCCcEEEee
Q 047191 304 YLQHLEVAVG--AIGWAVLPVILSSSVHLQSLVLRK 337 (341)
Q Consensus 304 ~L~~L~l~~~--~~~~~~l~~ll~~cp~L~~L~l~~ 337 (341)
+|+.+.|... ..+. .-+..| +|+.+.+.+
T Consensus 324 ~L~~l~lp~~l~~I~~----~aF~~~-~L~~l~l~~ 354 (401)
T 4fdw_A 324 KVTQLTIPANVTQINF----SAFNNT-GIKEVKVEG 354 (401)
T ss_dssp SCCEEEECTTCCEECT----TSSSSS-CCCEEEECC
T ss_pred CccEEEECccccEEcH----HhCCCC-CCCEEEEcC
Confidence 7888777433 1111 235677 888888865
No 146
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=92.70 E-value=0.014 Score=56.17 Aligned_cols=117 Identities=17% Similarity=0.116 Sum_probs=72.0
Q ss_pred CcceEEEEeeeeeeccCCCcccCCchhhhhhhccC--CCcchHHHHHhcCCccceeEEeeeecCCCCceeEEEeCCCcce
Q 047191 124 PSVEVLKLMSDFLLKVPAGGTCFPNVKILTMQLES--PDNILTEKLFCSCPSLEELSIQAYLNDEGPTTKFVISSSTLKQ 201 (341)
Q Consensus 124 ~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~~~L~~--~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~l~i~~~sL~~ 201 (341)
..|+.|+| ++..+...|....+++|+.| +|.+ ++ .+-.-+.++++|+.|+|.++.-.+++ .+ -..++|+.
T Consensus 441 ~~L~~L~L-s~n~l~~lp~~~~l~~L~~L--~Ls~N~l~--~lp~~~~~l~~L~~L~Ls~N~l~~lp--~l-~~l~~L~~ 512 (567)
T 1dce_A 441 ADVRVLHL-AHKDLTVLCHLEQLLLVTHL--DLSHNRLR--ALPPALAALRCLEVLQASDNALENVD--GV-ANLPRLQE 512 (567)
T ss_dssp TTCSEEEC-TTSCCSSCCCGGGGTTCCEE--ECCSSCCC--CCCGGGGGCTTCCEEECCSSCCCCCG--GG-TTCSSCCE
T ss_pred cCceEEEe-cCCCCCCCcCccccccCcEe--ecCccccc--ccchhhhcCCCCCEEECCCCCCCCCc--cc-CCCCCCcE
Confidence 35888999 76666554456678889999 8887 44 33334778899999999887543322 11 13467888
Q ss_pred EEEeeecCccccccCceeEEEecCCceEEEeeccccCce------eecCCCCeeEE
Q 047191 202 CTLWVETEGEMFTQAEYKVRITAPSLERLHIMSDIFGKF------VVHDLNSLTDV 251 (341)
Q Consensus 202 L~i~~c~~~~~~~~~~~~~~~~~p~L~~l~~~~~~~~~~------~~~~~~~L~~~ 251 (341)
|.+.++.-.+. .........++|+.|.+++...... ....+|+|+.+
T Consensus 513 L~Ls~N~l~~~---~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L 565 (567)
T 1dce_A 513 LLLCNNRLQQS---AAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 565 (567)
T ss_dssp EECCSSCCCSS---STTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred EECCCCCCCCC---CCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCcc
Confidence 88887421111 0011112478899999987654321 12346777655
No 147
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=92.50 E-value=0.012 Score=58.44 Aligned_cols=108 Identities=14% Similarity=0.019 Sum_probs=56.9
Q ss_pred cccccccCcceEEEEeeeeeecc-CCCcccCCchhhhhhhccC--CCcchHHHHHhcCCccceeEEeeeecCCCCceeEE
Q 047191 117 QIELYASPSVEVLKLMSDFLLKV-PAGGTCFPNVKILTMQLES--PDNILTEKLFCSCPSLEELSIQAYLNDEGPTTKFV 193 (341)
Q Consensus 117 p~~~~~~~~L~~L~L~~~~~l~~-~~~~~~~~~L~~L~~~L~~--~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~l~ 193 (341)
|..+.....|+.|+| ++..+.. +.....+++|+.| .|.+ ++ .+-.-+.++++|+.|+|.++.-..+. .--
T Consensus 217 ~~~~~~l~~L~~L~L-s~n~l~~l~~~~~~l~~L~~L--~Ls~N~l~--~lp~~~~~l~~L~~L~Ls~N~l~~lp--~~~ 289 (727)
T 4b8c_D 217 KDSKYDDQLWHALDL-SNLQIFNISANIFKYDFLTRL--YLNGNSLT--ELPAEIKNLSNLRVLDLSHNRLTSLP--AEL 289 (727)
T ss_dssp -----CCCCCCEEEC-TTSCCSCCCGGGGGCCSCSCC--BCTTSCCS--CCCGGGGGGTTCCEEECTTSCCSSCC--SSG
T ss_pred hhhhccCCCCcEEEC-CCCCCCCCChhhcCCCCCCEE--EeeCCcCc--ccChhhhCCCCCCEEeCcCCcCCccC--hhh
Confidence 334455677788888 6554433 3234467778888 7777 44 22233567778888888776543222 111
Q ss_pred EeCCCcceEEEeeecCccccccCceeEEEecCCceEEEeeccc
Q 047191 194 ISSSTLKQCTLWVETEGEMFTQAEYKVRITAPSLERLHIMSDI 236 (341)
Q Consensus 194 i~~~sL~~L~i~~c~~~~~~~~~~~~~~~~~p~L~~l~~~~~~ 236 (341)
-..++|+.|.+.+|.-... ... ....++|+.|.+++..
T Consensus 290 ~~l~~L~~L~L~~N~l~~l----p~~-~~~l~~L~~L~L~~N~ 327 (727)
T 4b8c_D 290 GSCFQLKYFYFFDNMVTTL----PWE-FGNLCNLQFLGVEGNP 327 (727)
T ss_dssp GGGTTCSEEECCSSCCCCC----CSS-TTSCTTCCCEECTTSC
T ss_pred cCCCCCCEEECCCCCCCcc----Chh-hhcCCCccEEeCCCCc
Confidence 2345677777776311110 011 1235677777776544
No 148
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=92.43 E-value=0.029 Score=45.53 Aligned_cols=105 Identities=12% Similarity=0.090 Sum_probs=60.2
Q ss_pred CCcceEEEeeecCccccccCceeEEEecCCceEEEeeccccCce---eecCCCCeeEEEEEEEeCccccCCCccchHHhh
Q 047191 197 STLKQCTLWVETEGEMFTQAEYKVRITAPSLERLHIMSDIFGKF---VVHDLNSLTDVILDIVYGEWSRVDPNRSIQLLQ 273 (341)
Q Consensus 197 ~sL~~L~i~~c~~~~~~~~~~~~~~~~~p~L~~l~~~~~~~~~~---~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~l~ 273 (341)
++|+.|.+.++.-... ......-..++|++|.+++...... .+..+++|+.+++.-....... ...+.
T Consensus 29 ~~l~~L~l~~n~i~~~---~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~------~~~~~ 99 (192)
T 1w8a_A 29 LHTTELLLNDNELGRI---SSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEIS------NKMFL 99 (192)
T ss_dssp TTCSEEECCSCCCCSB---CCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEEC------SSSST
T ss_pred CCCCEEECCCCcCCcc---CCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccC------HHHhc
Confidence 3788888887311111 0001112467888988887655433 3567777887766432111100 23355
Q ss_pred cCCCceEEEEecchhhhccccccCCCCCCCcccEEEEEEc
Q 047191 274 QLNNTTSLTVSYGVLCALDHAYHKWFPALSYLQHLEVAVG 313 (341)
Q Consensus 274 ~~~~l~~L~l~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~ 313 (341)
++++++.|.++.+.+..+. ...+..+++|++|++..+
T Consensus 100 ~l~~L~~L~L~~N~l~~~~---~~~~~~l~~L~~L~L~~N 136 (192)
T 1w8a_A 100 GLHQLKTLNLYDNQISCVM---PGSFEHLNSLTSLNLASN 136 (192)
T ss_dssp TCTTCCEEECCSSCCCEEC---TTSSTTCTTCCEEECTTC
T ss_pred CCCCCCEEECCCCcCCeeC---HHHhhcCCCCCEEEeCCC
Confidence 6788888888877654331 122335678888888776
No 149
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=90.48 E-value=0.23 Score=40.15 Aligned_cols=14 Identities=14% Similarity=0.299 Sum_probs=6.6
Q ss_pred hcCCCceEEEEecc
Q 047191 273 QQLNNTTSLTVSYG 286 (341)
Q Consensus 273 ~~~~~l~~L~l~~~ 286 (341)
..+++++.|.+..+
T Consensus 123 ~~l~~L~~L~L~~N 136 (193)
T 2wfh_A 123 NDLSALSHLAIGAN 136 (193)
T ss_dssp TTCTTCCEEECCSS
T ss_pred hcCccccEEEeCCC
Confidence 34444555555443
No 150
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=90.27 E-value=0.056 Score=42.95 Aligned_cols=104 Identities=16% Similarity=0.126 Sum_probs=58.5
Q ss_pred CcceEEEEeeeeeeccCC-C-cccCCchhhhhhhccC--CCcchHHHHHhcCCccceeEEeeeecCCCCceeEEEeCCCc
Q 047191 124 PSVEVLKLMSDFLLKVPA-G-GTCFPNVKILTMQLES--PDNILTEKLFCSCPSLEELSIQAYLNDEGPTTKFVISSSTL 199 (341)
Q Consensus 124 ~~L~~L~L~~~~~l~~~~-~-~~~~~~L~~L~~~L~~--~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~l~i~~~sL 199 (341)
++|++|++ ++..+...+ . ...+++|++| .|.+ ++. .....+.+++.|+.|++.++.-.+... ...-..++|
T Consensus 28 ~~l~~L~l-~~n~l~~~~~~~~~~l~~L~~L--~l~~n~l~~-~~~~~~~~l~~L~~L~l~~N~l~~~~~-~~~~~l~~L 102 (177)
T 2o6r_A 28 SSATRLEL-ESNKLQSLPHGVFDKLTQLTKL--SLSQNQIQS-LPDGVFDKLTKLTILYLHENKLQSLPN-GVFDKLTQL 102 (177)
T ss_dssp TTCSEEEC-CSSCCCCCCTTTTTTCTTCSEE--ECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTC
T ss_pred CCCcEEEe-CCCcccEeCHHHhcCcccccEE--ECCCCcceE-eChhHccCCCccCEEECCCCCccccCH-HHhhCCccc
Confidence 57888888 655554332 2 3457888888 8877 332 112235678888888888774332220 001134678
Q ss_pred ceEEEeeecCccccccCceeEEEecCCceEEEeeccc
Q 047191 200 KQCTLWVETEGEMFTQAEYKVRITAPSLERLHIMSDI 236 (341)
Q Consensus 200 ~~L~i~~c~~~~~~~~~~~~~~~~~p~L~~l~~~~~~ 236 (341)
+.|.+.++.-... .....-..++|++|.+.+..
T Consensus 103 ~~L~l~~N~l~~~----~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 103 KELALDTNQLKSV----PDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp CEEECCSSCCSCC----CTTTTTTCTTCCEEECCSSC
T ss_pred CEEECcCCcceEe----CHHHhcCCcccCEEEecCCC
Confidence 8888877321111 01111135788999887654
No 151
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=89.30 E-value=0.25 Score=38.99 Aligned_cols=96 Identities=19% Similarity=0.165 Sum_probs=54.5
Q ss_pred CCceEEEeeccccCce---eecCCCCeeEEEEEEEeCccccCCCccchHHhhcCCCceEEEEecchhhhccccccCCCCC
Q 047191 225 PSLERLHIMSDIFGKF---VVHDLNSLTDVILDIVYGEWSRVDPNRSIQLLQQLNNTTSLTVSYGVLCALDHAYHKWFPA 301 (341)
Q Consensus 225 p~L~~l~~~~~~~~~~---~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~L~l~~~~~~~~~~~~~~~~~~ 301 (341)
++|++|.+++.....+ .+..+++|+.+++.-..... .. ...+..+++++.|.++.+.+..+.. ..+..
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~--l~----~~~f~~l~~L~~L~L~~N~l~~~~~---~~~~~ 100 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTV--LP----AGVFDKLTQLTQLSLNDNQLKSIPR---GAFDN 100 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCC--CC----TTTTTTCTTCCEEECCSSCCCCCCT---TTTTT
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCc--cC----hhhccCCCCCCEEECCCCccCEeCH---HHhcC
Confidence 5566666665543322 24556666666553211111 00 4445678899999998876653311 12346
Q ss_pred CCcccEEEEEEc--CC---ChhHHHHHHhcCCC
Q 047191 302 LSYLQHLEVAVG--AI---GWAVLPVILSSSVH 329 (341)
Q Consensus 302 f~~L~~L~l~~~--~~---~~~~l~~ll~~cp~ 329 (341)
+++|++|+|..+ .. +..++...++.-+.
T Consensus 101 l~~L~~L~L~~N~~~c~c~~l~~l~~~l~~~~~ 133 (170)
T 3g39_A 101 LKSLTHIWLLNNPWDCACSDILYLSRWISQHPG 133 (170)
T ss_dssp CTTCCEEECCSSCBCTTBGGGHHHHHHHHHCGG
T ss_pred CCCCCEEEeCCCCCCCCchhHHHHHHHHHhCcc
Confidence 778999999887 11 34555555555443
No 152
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=88.33 E-value=0.049 Score=44.27 Aligned_cols=82 Identities=12% Similarity=0.015 Sum_probs=58.3
Q ss_pred cccccccCcceEEEEeeeeeeccCCCc-ccCCchhhhhhhccC--CCcchHHHHHhcCCccceeEEeeeecCCCCceeE-
Q 047191 117 QIELYASPSVEVLKLMSDFLLKVPAGG-TCFPNVKILTMQLES--PDNILTEKLFCSCPSLEELSIQAYLNDEGPTTKF- 192 (341)
Q Consensus 117 p~~~~~~~~L~~L~L~~~~~l~~~~~~-~~~~~L~~L~~~L~~--~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~l- 192 (341)
| .+..+++|+.|++ +++.+...+.. ..+++|+.| +|.+ ++. +. -+..+++|+.|++.++.-.... .+
T Consensus 64 ~-~~~~l~~L~~L~l-~~n~l~~l~~~~~~~~~L~~L--~L~~N~l~~--l~-~~~~l~~L~~L~l~~N~i~~~~--~~~ 134 (198)
T 1ds9_A 64 S-SLSGMENLRILSL-GRNLIKKIENLDAVADTLEEL--WISYNQIAS--LS-GIEKLVNLRVLYMSNNKITNWG--EID 134 (198)
T ss_dssp C-CHHHHTTCCEEEE-EEEEECSCSSHHHHHHHCSEE--EEEEEECCC--HH-HHHHHHHSSEEEESEEECCCHH--HHH
T ss_pred c-ccccCCCCCEEEC-CCCCcccccchhhcCCcCCEE--ECcCCcCCc--CC-ccccCCCCCEEECCCCcCCchh--HHH
Confidence 5 5566899999999 77777654333 346899999 9988 554 33 3778999999999998654222 10
Q ss_pred -EEeCCCcceEEEeee
Q 047191 193 -VISSSTLKQCTLWVE 207 (341)
Q Consensus 193 -~i~~~sL~~L~i~~c 207 (341)
--..++|+.|.+.++
T Consensus 135 ~l~~l~~L~~L~l~~N 150 (198)
T 1ds9_A 135 KLAALDKLEDLLLAGN 150 (198)
T ss_dssp HHTTTTTCSEEEECSC
T ss_pred HHhcCCCCCEEEecCC
Confidence 114578999999884
No 153
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=88.23 E-value=0.72 Score=41.66 Aligned_cols=59 Identities=19% Similarity=0.211 Sum_probs=32.2
Q ss_pred cccccCcceEEEEeeeeeeccCC-CcccCCchhhhhhhccC-CCcchHHHHHhcCCccceeEEee
Q 047191 119 ELYASPSVEVLKLMSDFLLKVPA-GGTCFPNVKILTMQLES-PDNILTEKLFCSCPSLEELSIQA 181 (341)
Q Consensus 119 ~~~~~~~L~~L~L~~~~~l~~~~-~~~~~~~L~~L~~~L~~-~~~~~l~~ll~~cp~Le~L~L~~ 181 (341)
++..|.+|+.+.+ ......... ...++++|+.+ .+.. ++.-. ...+.+|+.|+.+.+..
T Consensus 157 aF~~c~~L~~i~l-~~~~~~I~~~~F~~c~~L~~i--~l~~~~~~I~-~~~F~~~~~L~~i~~~~ 217 (394)
T 4fs7_A 157 AFATCESLEYVSL-PDSMETLHNGLFSGCGKLKSI--KLPRNLKIIR-DYCFAECILLENMEFPN 217 (394)
T ss_dssp TTTTCTTCCEEEC-CTTCCEECTTTTTTCTTCCBC--CCCTTCCEEC-TTTTTTCTTCCBCCCCT
T ss_pred hhcccCCCcEEec-CCccceeccccccCCCCceEE--EcCCCceEeC-chhhccccccceeecCC
Confidence 3445788888888 432211111 34456778888 7765 22111 12256677777776543
No 154
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=87.21 E-value=0.041 Score=54.50 Aligned_cols=84 Identities=15% Similarity=0.075 Sum_probs=57.6
Q ss_pred cccccccCcceEEEEeeeeeecc-CCCcccCCchhhhhhhccC--CCcchHHHHHhcCCccceeEEeeeecCCCCceeEE
Q 047191 117 QIELYASPSVEVLKLMSDFLLKV-PAGGTCFPNVKILTMQLES--PDNILTEKLFCSCPSLEELSIQAYLNDEGPTTKFV 193 (341)
Q Consensus 117 p~~~~~~~~L~~L~L~~~~~l~~-~~~~~~~~~L~~L~~~L~~--~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~l~ 193 (341)
|..++.+++|++|+| ++..+.. +.....+++|+.| +|.+ ++ .+-.-+.++++|+.|.|.++.-..+. .--
T Consensus 240 ~~~~~~l~~L~~L~L-s~N~l~~lp~~~~~l~~L~~L--~Ls~N~l~--~lp~~~~~l~~L~~L~L~~N~l~~lp--~~~ 312 (727)
T 4b8c_D 240 SANIFKYDFLTRLYL-NGNSLTELPAEIKNLSNLRVL--DLSHNRLT--SLPAELGSCFQLKYFYFFDNMVTTLP--WEF 312 (727)
T ss_dssp CGGGGGCCSCSCCBC-TTSCCSCCCGGGGGGTTCCEE--ECTTSCCS--SCCSSGGGGTTCSEEECCSSCCCCCC--SST
T ss_pred ChhhcCCCCCCEEEe-eCCcCcccChhhhCCCCCCEE--eCcCCcCC--ccChhhcCCCCCCEEECCCCCCCccC--hhh
Confidence 677788899999999 6655543 3245578999999 8888 44 23233677899999999888543322 111
Q ss_pred EeCCCcceEEEeee
Q 047191 194 ISSSTLKQCTLWVE 207 (341)
Q Consensus 194 i~~~sL~~L~i~~c 207 (341)
-..++|+.|.+.++
T Consensus 313 ~~l~~L~~L~L~~N 326 (727)
T 4b8c_D 313 GNLCNLQFLGVEGN 326 (727)
T ss_dssp TSCTTCCCEECTTS
T ss_pred hcCCCccEEeCCCC
Confidence 13467888888874
No 155
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=87.14 E-value=0.51 Score=37.33 Aligned_cols=80 Identities=18% Similarity=0.211 Sum_probs=45.1
Q ss_pred CCceEEEeeccccCce---eecCCCCeeEEEEEEEeCccccCCCccchHHhhcCCCceEEEEecchhhhccccccCCCCC
Q 047191 225 PSLERLHIMSDIFGKF---VVHDLNSLTDVILDIVYGEWSRVDPNRSIQLLQQLNNTTSLTVSYGVLCALDHAYHKWFPA 301 (341)
Q Consensus 225 p~L~~l~~~~~~~~~~---~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~L~l~~~~~~~~~~~~~~~~~~ 301 (341)
++|++|.+++...... .+..+++|+.+++.-..... +. ...+..+++++.|.++.+.+..+.. ..+..
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--i~----~~~~~~l~~L~~L~L~~N~l~~l~~---~~~~~ 103 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTA--IP----TGVFDKLTQLTQLDLNDNHLKSIPR---GAFDN 103 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC--CC----TTTTTTCTTCCEEECCSSCCCCCCT---TTTTT
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCc--cC----hhHhCCcchhhEEECCCCccceeCH---HHhcc
Confidence 5566666655443322 24555666665553211110 00 3445678889999998876653311 12335
Q ss_pred CCcccEEEEEEc
Q 047191 302 LSYLQHLEVAVG 313 (341)
Q Consensus 302 f~~L~~L~l~~~ 313 (341)
+++|++|++..+
T Consensus 104 l~~L~~L~L~~N 115 (174)
T 2r9u_A 104 LKSLTHIYLYNN 115 (174)
T ss_dssp CTTCSEEECCSS
T ss_pred ccCCCEEEeCCC
Confidence 778999998887
No 156
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=86.83 E-value=0.4 Score=41.06 Aligned_cols=62 Identities=18% Similarity=0.067 Sum_probs=42.4
Q ss_pred HHhhcCCCceEEEEecchhhhccccccCCCCCCCcccEEEEEEcCCC------hhHHHHHHhcCCCCCcEE
Q 047191 270 QLLQQLNNTTSLTVSYGVLCALDHAYHKWFPALSYLQHLEVAVGAIG------WAVLPVILSSSVHLQSLV 334 (341)
Q Consensus 270 ~~l~~~~~l~~L~l~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~~------~~~l~~ll~~cp~L~~L~ 334 (341)
.++..+++++.|.|+.+.+..+. .+..+..+ +|++|.|..+... ......++..+|+|+.|+
T Consensus 190 ~~~~~l~~L~~L~Ls~N~i~~~~--~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 190 SIVQKAPNLKILNLSGNELKSER--ELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp THHHHSTTCCEEECTTSCCCSGG--GGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred hHHhhCCCCCEEECCCCccCCch--hhhhcccC-CcceEEccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence 45678899999999988765442 12222234 7999999887211 134457899999999886
No 157
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=85.71 E-value=0.15 Score=45.18 Aligned_cols=84 Identities=12% Similarity=0.074 Sum_probs=51.0
Q ss_pred cccccccCcceEEEEeee-eeecc-CC-CcccCCchhhhhhhccC--CCcchHHHHHhcCCccceeEEeeeecCCCCcee
Q 047191 117 QIELYASPSVEVLKLMSD-FLLKV-PA-GGTCFPNVKILTMQLES--PDNILTEKLFCSCPSLEELSIQAYLNDEGPTTK 191 (341)
Q Consensus 117 p~~~~~~~~L~~L~L~~~-~~l~~-~~-~~~~~~~L~~L~~~L~~--~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~ 191 (341)
|. +....+|+.|+| ++ ..+.. ++ ...++++|+.| +|.+ ++.- ....+.++++|+.|+|.+..-..+. .
T Consensus 25 p~-l~~~~~L~~L~l-~~~n~l~~~~~~~~~~l~~L~~L--~l~~N~l~~~-~~~~~~~l~~L~~L~l~~N~l~~~~--~ 97 (347)
T 2ifg_A 25 HH-LPGAENLTELYI-ENQQHLQHLELRDLRGLGELRNL--TIVKSGLRFV-APDAFHFTPRLSRLNLSFNALESLS--W 97 (347)
T ss_dssp TT-SCSCSCCSEEEC-CSCSSCCEECGGGSCSCCCCSEE--ECCSSCCCEE-CTTGGGSCSCCCEEECCSSCCSCCC--S
T ss_pred CC-CCCCCCeeEEEc-cCCCCCCCcChhHhccccCCCEE--ECCCCcccee-CHHHhcCCcCCCEEeCCCCccceeC--H
Confidence 66 666788999999 63 44433 32 24568889999 8888 3331 1223567889999998886433222 1
Q ss_pred EEEeCCCcceEEEeee
Q 047191 192 FVISSSTLKQCTLWVE 207 (341)
Q Consensus 192 l~i~~~sL~~L~i~~c 207 (341)
-.....+|+.|.+.++
T Consensus 98 ~~~~~~~L~~l~l~~N 113 (347)
T 2ifg_A 98 KTVQGLSLQELVLSGN 113 (347)
T ss_dssp TTTCSCCCCEEECCSS
T ss_pred HHcccCCceEEEeeCC
Confidence 0111223788888763
No 158
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=83.87 E-value=0.35 Score=38.30 Aligned_cols=84 Identities=14% Similarity=0.079 Sum_probs=52.0
Q ss_pred cccccccCcceEEEEeeeeeeccC-C-CcccCCchhhhhhhccC--CCcchHHHHHhcCCccceeEEeeeecCCCCceeE
Q 047191 117 QIELYASPSVEVLKLMSDFLLKVP-A-GGTCFPNVKILTMQLES--PDNILTEKLFCSCPSLEELSIQAYLNDEGPTTKF 192 (341)
Q Consensus 117 p~~~~~~~~L~~L~L~~~~~l~~~-~-~~~~~~~L~~L~~~L~~--~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~l 192 (341)
|..+. ++|+.|+| ++..+... + ...++++|+.| +|.+ ++.- -..++.++++|+.|+|.+..-..+.. ..
T Consensus 28 P~~~~--~~L~~L~L-s~N~l~~~~~~~~~~l~~L~~L--~Ls~N~l~~i-~~~~~~~l~~L~~L~L~~N~l~~l~~-~~ 100 (174)
T 2r9u_A 28 PAGIP--TDKQRLWL-NNNQITKLEPGVFDHLVNLQQL--YFNSNKLTAI-PTGVFDKLTQLTQLDLNDNHLKSIPR-GA 100 (174)
T ss_dssp CSCCC--TTCSEEEC-CSSCCCCCCTTTTTTCTTCCEE--ECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCT-TT
T ss_pred CCCcC--CCCcEEEe-CCCCccccCHHHhcCCcCCCEE--ECCCCCCCcc-ChhHhCCcchhhEEECCCCccceeCH-HH
Confidence 44443 77899999 65555432 2 34568899999 8888 3321 11235678999999998864332220 00
Q ss_pred EEeCCCcceEEEeee
Q 047191 193 VISSSTLKQCTLWVE 207 (341)
Q Consensus 193 ~i~~~sL~~L~i~~c 207 (341)
.-..++|+.|.+.++
T Consensus 101 ~~~l~~L~~L~L~~N 115 (174)
T 2r9u_A 101 FDNLKSLTHIYLYNN 115 (174)
T ss_dssp TTTCTTCSEEECCSS
T ss_pred hccccCCCEEEeCCC
Confidence 112467888988874
No 159
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=83.46 E-value=5.1 Score=35.94 Aligned_cols=12 Identities=0% Similarity=0.224 Sum_probs=7.2
Q ss_pred ccccCcceEEEE
Q 047191 120 LYASPSVEVLKL 131 (341)
Q Consensus 120 ~~~~~~L~~L~L 131 (341)
++.|..|+.+.+
T Consensus 133 F~~c~~L~~i~l 144 (394)
T 4gt6_A 133 FHHCEELDTVTI 144 (394)
T ss_dssp TTTCTTCCEEEC
T ss_pred hhhhcccccccc
Confidence 344666666666
No 160
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=83.41 E-value=0.37 Score=37.94 Aligned_cols=84 Identities=17% Similarity=0.103 Sum_probs=52.5
Q ss_pred cccccccCcceEEEEeeeeeecc-CC-CcccCCchhhhhhhccC--CCcchHHHHHhcCCccceeEEeeeecCCCCceeE
Q 047191 117 QIELYASPSVEVLKLMSDFLLKV-PA-GGTCFPNVKILTMQLES--PDNILTEKLFCSCPSLEELSIQAYLNDEGPTTKF 192 (341)
Q Consensus 117 p~~~~~~~~L~~L~L~~~~~l~~-~~-~~~~~~~L~~L~~~L~~--~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~l 192 (341)
|..+. ++|+.|+| ++..+.. ++ ...++++|++| +|.+ ++. .-...+.+.++|+.|+|.+..-..+.. ..
T Consensus 25 p~~~~--~~l~~L~L-~~N~i~~~~~~~~~~l~~L~~L--~Ls~N~l~~-l~~~~f~~l~~L~~L~L~~N~l~~~~~-~~ 97 (170)
T 3g39_A 25 PTGIP--TTTQVLYL-YDNQITKLEPGVFDRLTQLTRL--DLDNNQLTV-LPAGVFDKLTQLTQLSLNDNQLKSIPR-GA 97 (170)
T ss_dssp CSCCC--TTCSEEEC-CSSCCCCCCTTTTTTCTTCSEE--ECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCT-TT
T ss_pred CccCC--CCCcEEEc-CCCcCCccChhhhcCcccCCEE--ECCCCCcCc-cChhhccCCCCCCEEECCCCccCEeCH-HH
Confidence 44443 67899999 6555543 22 34568899999 8888 432 112335778999999998874432220 01
Q ss_pred EEeCCCcceEEEeee
Q 047191 193 VISSSTLKQCTLWVE 207 (341)
Q Consensus 193 ~i~~~sL~~L~i~~c 207 (341)
.-..++|+.|.+.+.
T Consensus 98 ~~~l~~L~~L~L~~N 112 (170)
T 3g39_A 98 FDNLKSLTHIWLLNN 112 (170)
T ss_dssp TTTCTTCCEEECCSS
T ss_pred hcCCCCCCEEEeCCC
Confidence 113468889988873
No 161
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=82.32 E-value=0.64 Score=39.80 Aligned_cols=55 Identities=20% Similarity=0.187 Sum_probs=29.4
Q ss_pred cccCcceEEEEeeeeeeccCCCcccCC--chhhhhhhccC--CCc------chHHHHHhcCCccceeE
Q 047191 121 YASPSVEVLKLMSDFLLKVPAGGTCFP--NVKILTMQLES--PDN------ILTEKLFCSCPSLEELS 178 (341)
Q Consensus 121 ~~~~~L~~L~L~~~~~l~~~~~~~~~~--~L~~L~~~L~~--~~~------~~l~~ll~~cp~Le~L~ 178 (341)
..+++|+.|+| ++-.+........+. +|+.| .|.+ +.. .....++..+|+|+.|+
T Consensus 193 ~~l~~L~~L~L-s~N~i~~~~~l~~l~~l~L~~L--~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 193 QKAPNLKILNL-SGNELKSERELDKIKGLKLEEL--WLDGNSLCDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp HHSTTCCEEEC-TTSCCCSGGGGGGGTTSCCSEE--ECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred hhCCCCCEEEC-CCCccCCchhhhhcccCCcceE--EccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence 34677777777 544333221122222 66666 6666 332 33456666777777664
No 162
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=75.04 E-value=2.7 Score=36.88 Aligned_cols=91 Identities=18% Similarity=0.155 Sum_probs=48.2
Q ss_pred CCceEEEeec-cccCce---eecCCCCeeEEEEEEEeCccccCCCccchHHhhcCCCceEEEEecchhhhccccccCCCC
Q 047191 225 PSLERLHIMS-DIFGKF---VVHDLNSLTDVILDIVYGEWSRVDPNRSIQLLQQLNNTTSLTVSYGVLCALDHAYHKWFP 300 (341)
Q Consensus 225 p~L~~l~~~~-~~~~~~---~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~L~l~~~~~~~~~~~~~~~~~ 300 (341)
++|++|.+++ .....+ .+.++++|+.+++.-..... .. ...+..+++++.|.|+.+.+..+.... +.
T Consensus 31 ~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~--~~----~~~~~~l~~L~~L~l~~N~l~~~~~~~---~~ 101 (347)
T 2ifg_A 31 ENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRF--VA----PDAFHFTPRLSRLNLSFNALESLSWKT---VQ 101 (347)
T ss_dssp SCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCE--EC----TTGGGSCSCCCEEECCSSCCSCCCSTT---TC
T ss_pred CCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccce--eC----HHHhcCCcCCCEEeCCCCccceeCHHH---cc
Confidence 3566666654 332222 24566666666553211111 00 445678899999999988765432111 11
Q ss_pred CCCcccEEEEEEc----CCChhHHHHHHh
Q 047191 301 ALSYLQHLEVAVG----AIGWAVLPVILS 325 (341)
Q Consensus 301 ~f~~L~~L~l~~~----~~~~~~l~~ll~ 325 (341)
.++ |+.|.|..+ .....++..+++
T Consensus 102 ~~~-L~~l~l~~N~~~c~c~l~~~~~~~~ 129 (347)
T 2ifg_A 102 GLS-LQELVLSGNPLHCSCALRWLQRWEE 129 (347)
T ss_dssp SCC-CCEEECCSSCCCCCGGGHHHHHHHH
T ss_pred cCC-ceEEEeeCCCccCCCccHHHHHHHH
Confidence 222 889998877 223345555544
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=53.61 E-value=3.1 Score=33.67 Aligned_cols=57 Identities=19% Similarity=0.220 Sum_probs=31.2
Q ss_pred cCcceEEEEeeeeeeccCC------CcccCCchhhhhhhccC--CCcchHHHHHh---cCCccceeEEeee
Q 047191 123 SPSVEVLKLMSDFLLKVPA------GGTCFPNVKILTMQLES--PDNILTEKLFC---SCPSLEELSIQAY 182 (341)
Q Consensus 123 ~~~L~~L~L~~~~~l~~~~------~~~~~~~L~~L~~~L~~--~~~~~l~~ll~---~cp~Le~L~L~~c 182 (341)
..+|+.|+| +++.+.+.. ....-+.|++| +|.+ +++.+..++.. ....|++|.|.++
T Consensus 69 N~~L~~L~L-~~n~igd~ga~alA~aL~~N~tL~~L--~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 69 SKHIEKFSL-ANTAISDSEARGLIELIETSPSLRVL--NVESNFLTPELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp CSCCCEEEC-TTSCCBHHHHTTHHHHHHHCSSCCEE--ECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred CCCcCEEEc-cCCCCChHHHHHHHHHHhcCCccCeE--ecCCCcCCHHHHHHHHHHHhhCCceeEEECCCC
Confidence 456677777 655553320 01123567777 7766 66666555433 3455666666654
No 164
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=46.33 E-value=11 Score=33.64 Aligned_cols=80 Identities=15% Similarity=0.218 Sum_probs=48.8
Q ss_pred cccccCcceEEEEeeeee--eccCCCcccCCchhhhhhhccC-CCcchHHHHHhcCCccceeEEeee-ecCCCCceeEEE
Q 047191 119 ELYASPSVEVLKLMSDFL--LKVPAGGTCFPNVKILTMQLES-PDNILTEKLFCSCPSLEELSIQAY-LNDEGPTTKFVI 194 (341)
Q Consensus 119 ~~~~~~~L~~L~L~~~~~--l~~~~~~~~~~~L~~L~~~L~~-~~~~~l~~ll~~cp~Le~L~L~~c-~~~~~~~~~l~i 194 (341)
++..|..|+.+.+ .... ++.. .+.++.+|+.+ .|.. ++.=+ ...+.+|.+|+++.|-.. ...+ . .-.-
T Consensus 283 aF~~c~~L~~i~l-~~~i~~I~~~-aF~~c~~L~~i--~lp~~v~~I~-~~aF~~C~~L~~i~ip~sv~~I~-~--~aF~ 354 (394)
T 4gt6_A 283 AFMNCPALQDIEF-SSRITELPES-VFAGCISLKSI--DIPEGITQIL-DDAFAGCEQLERIAIPSSVTKIP-E--SAFS 354 (394)
T ss_dssp TTTTCTTCCEEEC-CTTCCEECTT-TTTTCTTCCEE--ECCTTCCEEC-TTTTTTCTTCCEEEECTTCCBCC-G--GGGT
T ss_pred ccccccccccccC-CCcccccCce-eecCCCCcCEE--EeCCcccEeh-HhHhhCCCCCCEEEECcccCEEh-H--hHhh
Confidence 4456899999998 5322 2222 45567899999 8866 22211 123678999999998432 1111 0 1112
Q ss_pred eCCCcceEEEee
Q 047191 195 SSSTLKQCTLWV 206 (341)
Q Consensus 195 ~~~sL~~L~i~~ 206 (341)
.|.+|+.+.+.+
T Consensus 355 ~C~~L~~i~~~~ 366 (394)
T 4gt6_A 355 NCTALNNIEYSG 366 (394)
T ss_dssp TCTTCCEEEESS
T ss_pred CCCCCCEEEECC
Confidence 567899988876
No 165
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=44.84 E-value=8.5 Score=34.44 Aligned_cols=81 Identities=16% Similarity=0.188 Sum_probs=49.1
Q ss_pred cccccCcceEEEEeeeee-eccCCCcccCCchhhhhhhccC-CCcchHHHHHhcCCccceeEEeee-ecCCCCceeEEEe
Q 047191 119 ELYASPSVEVLKLMSDFL-LKVPAGGTCFPNVKILTMQLES-PDNILTEKLFCSCPSLEELSIQAY-LNDEGPTTKFVIS 195 (341)
Q Consensus 119 ~~~~~~~L~~L~L~~~~~-l~~~~~~~~~~~L~~L~~~L~~-~~~~~l~~ll~~cp~Le~L~L~~c-~~~~~~~~~l~i~ 195 (341)
+++.|..|+.+.+..+.. ++.. .+.++.+|+++ .|.. ++.=+ ...+.+|.+|+++.+-.. ...+.. -.-.
T Consensus 292 ~F~~~~~L~~i~l~~~i~~I~~~-aF~~c~~L~~i--~lp~~v~~I~-~~aF~~c~~L~~i~lp~~l~~I~~~---aF~~ 364 (394)
T 4fs7_A 292 TFYGCSSLTEVKLLDSVKFIGEE-AFESCTSLVSI--DLPYLVEEIG-KRSFRGCTSLSNINFPLSLRKIGAN---AFQG 364 (394)
T ss_dssp TTTTCTTCCEEEECTTCCEECTT-TTTTCTTCCEE--CCCTTCCEEC-TTTTTTCTTCCEECCCTTCCEECTT---TBTT
T ss_pred cccccccccccccccccceechh-hhcCCCCCCEE--EeCCcccEEh-HHhccCCCCCCEEEECccccEehHH---HhhC
Confidence 345689999999932322 2222 45567899999 8866 32211 123678999999988532 100000 1225
Q ss_pred CCCcceEEEee
Q 047191 196 SSTLKQCTLWV 206 (341)
Q Consensus 196 ~~sL~~L~i~~ 206 (341)
|++|+.+.+..
T Consensus 365 C~~L~~i~lp~ 375 (394)
T 4fs7_A 365 CINLKKVELPK 375 (394)
T ss_dssp CTTCCEEEEEG
T ss_pred CCCCCEEEECC
Confidence 67899998876
No 166
>2kwv_A RAD30 homolog B, DNA polymerase IOTA; ubiquitin-binding motif, UBM, TL protein binding-signaling protein complex; HET: DNA; NMR {Mus musculus}
Probab=33.45 E-value=24 Score=20.84 Aligned_cols=16 Identities=31% Similarity=0.345 Sum_probs=8.5
Q ss_pred ccCCCChHHHHHHHcC
Q 047191 6 RINALPDSVLCHILSY 21 (341)
Q Consensus 6 ~is~LPd~iL~~Ils~ 21 (341)
.++.||.||-.+|+|-
T Consensus 20 VF~~LP~dIQ~Ells~ 35 (48)
T 2kwv_A 20 VFKQLPADIQEEILSG 35 (48)
T ss_dssp GTTTSCHHHHHHHTTC
T ss_pred HHHHCcHHHHHHHHhc
Confidence 3555555555555543
No 167
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=31.14 E-value=27 Score=25.72 Aligned_cols=48 Identities=23% Similarity=0.228 Sum_probs=28.0
Q ss_pred CceEEEEecchhhhccccccCCCCCCCcccEEEEEEc----CCChhHHHHHHhcC
Q 047191 277 NTTSLTVSYGVLCALDHAYHKWFPALSYLQHLEVAVG----AIGWAVLPVILSSS 327 (341)
Q Consensus 277 ~l~~L~l~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~----~~~~~~l~~ll~~c 327 (341)
+++.|.|+.+.+..+.... +..+++|+.|.|..+ +-...++...++.-
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~---f~~l~~L~~L~L~~NP~~CdC~l~~l~~wl~~~ 83 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGL---LDALPALRTAHLGANPWRCDCRLVPLRAWLAGR 83 (130)
T ss_dssp TCSEEECTTSCCSSCCTTT---GGGCTTCCEEECCSSCCBCSGGGHHHHHHHHTS
T ss_pred CCCEEECCCCcCCccChhh---hhhccccCEEEecCCCeeccCccHHHHHHHHhC
Confidence 5777888777665442221 224567888888776 22445555555543
No 168
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=28.17 E-value=14 Score=32.61 Aligned_cols=57 Identities=12% Similarity=0.240 Sum_probs=35.5
Q ss_pred ccccCcceEEEEeeeeeecc-CCCcccCCchhhhhhhccC--CCcchHHHHHhcCCccceeEEe
Q 047191 120 LYASPSVEVLKLMSDFLLKV-PAGGTCFPNVKILTMQLES--PDNILTEKLFCSCPSLEELSIQ 180 (341)
Q Consensus 120 ~~~~~~L~~L~L~~~~~l~~-~~~~~~~~~L~~L~~~L~~--~~~~~l~~ll~~cp~Le~L~L~ 180 (341)
+..|..|+.+.+ ....-.. .....++++|+.+ .+.. ++.=+ ...+.+|.+|+++.|-
T Consensus 259 F~~~~~l~~i~l-~~~i~~i~~~aF~~c~~L~~i--~l~~~~i~~I~-~~aF~~c~~L~~i~lp 318 (379)
T 4h09_A 259 LQNCTALKTLNF-YAKVKTVPYLLCSGCSNLTKV--VMDNSAIETLE-PRVFMDCVKLSSVTLP 318 (379)
T ss_dssp TTTCTTCCEEEE-CCCCSEECTTTTTTCTTCCEE--EECCTTCCEEC-TTTTTTCTTCCEEECC
T ss_pred cceeehhccccc-cccceeccccccccccccccc--cccccccceeh-hhhhcCCCCCCEEEcC
Confidence 345888999988 4322111 1145567889998 8864 22111 1236789999999884
Done!