BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047192
(600 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1XQ6|A Chain A, X-ray Structure Of Gene Product From Arabidopsis Thaliana
At5g02240
pdb|1XQ6|B Chain B, X-ray Structure Of Gene Product From Arabidopsis Thaliana
At5g02240
pdb|1YBM|A Chain A, X-Ray Structure Of Selenomethionyl Gene Product From
Arabidopsis Thaliana At5g02240 In Space Group P21212
pdb|1YBM|B Chain B, X-Ray Structure Of Selenomethionyl Gene Product From
Arabidopsis Thaliana At5g02240 In Space Group P21212
pdb|2Q46|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
Gene Product From Arabidopsis Thaliana At5g02240
pdb|2Q46|B Chain B, Ensemble Refinement Of The Protein Crystal Structure Of
Gene Product From Arabidopsis Thaliana At5g02240
pdb|2Q4B|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
Selenomethionyl Gene Product From Arabidopsis Thaliana
At5g02240 In Space Group P21212
pdb|2Q4B|B Chain B, Ensemble Refinement Of The Protein Crystal Structure Of
Selenomethionyl Gene Product From Arabidopsis Thaliana
At5g02240 In Space Group P21212
Length = 253
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 84/189 (44%), Gaps = 35/189 (18%)
Query: 382 SLRPIFQ---ARTVLDA------PPFDPSNIVSLQLMFSKFEYDGKLNPTFVEGAFQLPV 432
S+ P FQ A +L + P FDP+ + +F +Y +++ ++ Q+
Sbjct: 62 SINPAFQGIDALVILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVD--WIGQKNQIDA 119
Query: 433 SSIQSYIKDPVTPRFVHVSSAGVTRPERPGLDLSKQPPAVRLNK-ELGFILTFKLKGEDL 491
+ + V V S G T P+ P LNK G IL +K K E
Sbjct: 120 AKVAG------VKHIVVVGSMGGTNPDHP------------LNKLGNGNILVWKRKAEQY 161
Query: 492 IRESGIPYTIVRPCALTEEPAGA-DLIFDQGDNI----TGKISREEVARICVAALESPFA 546
+ +SG PYTI+R L ++ G +L+ + D + T + R +VA +C+ AL A
Sbjct: 162 LADSGTPYTIIRAGGLLDKEGGVRELLVGKDDELLQTDTKTVPRADVAEVCIQALLFEEA 221
Query: 547 LDKTFEVKS 555
+K F++ S
Sbjct: 222 KNKAFDLGS 230
>pdb|3E8X|A Chain A, Putative Nad-Dependent EpimeraseDEHYDRATASE FROM BACILLUS
HALODURANS
Length = 236
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 50/109 (45%), Gaps = 14/109 (12%)
Query: 446 RFVHVSSAGVTRPERPGLDLSKQPPAVRLNKELGFILTFKLKGEDLIRESGIPYTIVRPC 505
RF+ VSS G P+ + P R L K +D ++ S + YTIVRP
Sbjct: 125 RFIXVSSVGTVDPD-------QGPXNXR------HYLVAKRLADDELKRSSLDYTIVRPG 171
Query: 506 ALT-EEPAGADLIFDQGDNITGKISREEVARICVAALESPFALDKTFEV 553
L+ EE G + IT I+R +VA++ ++ + KTFEV
Sbjct: 172 PLSNEESTGKVTVSPHFSEITRSITRHDVAKVIAELVDQQHTIGKTFEV 220
>pdb|1WMX|A Chain A, Crystal Structure Of Family 30 Carbohydrate Binding Module
pdb|1WMX|B Chain B, Crystal Structure Of Family 30 Carbohydrate Binding Module
pdb|1WZX|A Chain A, Crystal Structure Of Family 30 Carbohydrate Binding
Module.
pdb|1WZX|B Chain B, Crystal Structure Of Family 30 Carbohydrate Binding
Module.
pdb|1WZX|C Chain C, Crystal Structure Of Family 30 Carbohydrate Binding
Module.
pdb|1WZX|D Chain D, Crystal Structure Of Family 30 Carbohydrate Binding Module
Length = 205
Score = 36.6 bits (83), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 59/138 (42%), Gaps = 23/138 (16%)
Query: 287 TFQIDRTGGENGAPTGLFKGVVSTANNGGFTSIRTRNFAEPEDLSAY--DG-LKLRLKGD 343
T +D T NG PT L V +T +G + S+ T DLS Y +G L+ +KG
Sbjct: 36 TLPVDTTVTYNGLPT-LRLNVQTTVQSGWWISLLTLRGWNTHDLSQYVENGYLEFDIKGK 94
Query: 344 --------GRRYKFVVRTSS-DWDTVGYTASFDTVGGQWQSIRLPFSSLRPIFQARTVLD 394
G R K R + D +++ TV WQ +++P L I
Sbjct: 95 EGGEDFVIGFRDKVYERVYGLEIDVTTVISNYVTVTTDWQHVKIPLRDLMKINNG----- 149
Query: 395 APPFDPSNIVSLQLMFSK 412
FDPS++ L+FSK
Sbjct: 150 ---FDPSSVTC--LVFSK 162
>pdb|2C24|A Chain A, Family 30 Carbohydrate-Binding Module Of Cellulosomal
Cellulase Cel9d-Cel44b Of Clostridium Thermocellum
pdb|2C24|B Chain B, Family 30 Carbohydrate-Binding Module Of Cellulosomal
Cellulase Cel9d-Cel44b Of Clostridium Thermocellum
Length = 206
Score = 36.2 bits (82), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 59/138 (42%), Gaps = 23/138 (16%)
Query: 287 TFQIDRTGGENGAPTGLFKGVVSTANNGGFTSIRTRNFAEPEDLSAY--DG-LKLRLKGD 343
T +D T NG PT L V +T +G + S+ T DLS Y +G L+ +KG
Sbjct: 44 TLPVDTTVTYNGLPT-LRLNVQTTVQSGWWISLLTLRGWNTHDLSQYVENGYLEFDIKGK 102
Query: 344 --------GRRYKFVVRTSS-DWDTVGYTASFDTVGGQWQSIRLPFSSLRPIFQARTVLD 394
G R K R + D +++ TV WQ +++P L I
Sbjct: 103 EGGEDFVIGFRDKVYERVYGLEIDVTTVISNYVTVTTDWQHVKIPLRDLMKINNG----- 157
Query: 395 APPFDPSNIVSLQLMFSK 412
FDPS++ L+FSK
Sbjct: 158 ---FDPSSVTC--LVFSK 170
>pdb|4HNG|A Chain A, The Crystal Structure Of A Short-Chain
DehydrogenasesREDUCTASE (WIDE Type) From Veillonella
Parvula Dsm 2008
pdb|4HNH|A Chain A, The Crystal Structure Of A Short-Chain
DehydrogenasesREDUCTASE (WIDE Type) From Veillonella
Parvula Dsm 2008 In Complex With Nadp
pdb|4HNH|B Chain B, The Crystal Structure Of A Short-Chain
DehydrogenasesREDUCTASE (WIDE Type) From Veillonella
Parvula Dsm 2008 In Complex With Nadp
Length = 221
Score = 32.3 bits (72), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 6/65 (9%)
Query: 487 KGEDLIRESGIPYTIVRPCALTEEPAGAD--LIFDQGDNITGKISREEVAR----ICVAA 540
+ +++RES + YTI+R L +P D LI + ++SRE V + I AA
Sbjct: 137 QARNVLRESNLNYTILRLTWLYNDPEKTDYELIPEGAQFNDAQVSREAVVKAIFDILHAA 196
Query: 541 LESPF 545
E+PF
Sbjct: 197 DETPF 201
>pdb|3R6D|A Chain A, Crystal Structure Of Nad-Dependent EpimeraseDEHYDRATASE
FROM Veillonella Parvula Dsm 2008 With Cz-Methylated
Lysine
Length = 221
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 6/65 (9%)
Query: 487 KGEDLIRESGIPYTIVRPCALTEEPAGAD--LIFDQGDNITGKISREEVAR----ICVAA 540
+ +++RES + YTI+R L +P D LI + ++SRE V + I AA
Sbjct: 137 QARNVLRESNLNYTILRLTWLYNDPEXTDYELIPEGAQFNDAQVSREAVVKAIFDILHAA 196
Query: 541 LESPF 545
E+PF
Sbjct: 197 DETPF 201
>pdb|3E48|A Chain A, Crystal Structure Of A Nucleoside-Diphosphate-Sugar
Epimerase (Sav0421) From Staphylococcus Aureus,
Northeast Structural Genomics Consortium Target Zr319
pdb|3E48|B Chain B, Crystal Structure Of A Nucleoside-Diphosphate-Sugar
Epimerase (Sav0421) From Staphylococcus Aureus,
Northeast Structural Genomics Consortium Target Zr319
Length = 289
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 8/69 (11%)
Query: 491 LIRESGIPYTIVRPCA--------LTEEPAGADLIFDQGDNITGKISREEVARICVAALE 542
L+ SGI YT VR L E LI+ GD I+R ++AR +A ++
Sbjct: 127 LLSTSGIDYTYVRXAXYXDPLKPYLPELXNXHKLIYPAGDGRINYITRNDIARGVIAIIK 186
Query: 543 SPFALDKTF 551
+P K +
Sbjct: 187 NPDTWGKRY 195
>pdb|3DQP|A Chain A, Crystal Structure Of The Oxidoreductase Ylbe From
Lactococcus Lactis, Northeast Structural Genomics
Consortium Target Kr121
Length = 219
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Query: 491 LIRESGIPYTIVRPCALTEEPAGADLIFDQGDNITGKISREEVA 534
L +E+ + YTI++P ALTEE A + D D ++ + +VA
Sbjct: 137 LTKETNLDYTIIQPGALTEEEATG--LIDINDEVSASNTIGDVA 178
>pdb|2JL1|A Chain A, Structural Insight Into Bioremediation Of Triphenylmethane
Dyes By Citrobacter Sp. Triphenylmethane Reductase
Length = 287
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 37/86 (43%), Gaps = 11/86 (12%)
Query: 485 KLKGEDLIRESGIPYTIVRPCALTE----------EPAGADLIFDQGDNITGKISREEVA 534
L E IR + IPYT +R T+ +GA ++ + G I ++R E+A
Sbjct: 121 HLATEYAIRTTNIPYTFLRNALYTDFFVNEGLRASTESGA-IVTNAGSGIVNSVTRNELA 179
Query: 535 RICVAALESPFALDKTFEVKSTIPFS 560
L +KT+ + S P++
Sbjct: 180 LAAATVLTEEGHENKTYNLVSNQPWT 205
>pdb|2VRC|A Chain A, Crystal Structure Of The Citrobacter Sp. Triphenylmethane
Reductase Complexed With Nadp(h)
pdb|2VRC|B Chain B, Crystal Structure Of The Citrobacter Sp. Triphenylmethane
Reductase Complexed With Nadp(h)
pdb|2VRC|C Chain C, Crystal Structure Of The Citrobacter Sp. Triphenylmethane
Reductase Complexed With Nadp(h)
Length = 287
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 37/86 (43%), Gaps = 11/86 (12%)
Query: 485 KLKGEDLIRESGIPYTIVRPCALTE----------EPAGADLIFDQGDNITGKISREEVA 534
L E IR + IPYT +R T+ +GA ++ + G I ++R E+A
Sbjct: 121 HLATEYAIRTTNIPYTFLRNALYTDFFVNEGLRASTESGA-IVTNAGSGIVNSVTRNELA 179
Query: 535 RICVAALESPFALDKTFEVKSTIPFS 560
L +KT+ + S P++
Sbjct: 180 LAAATVLTEEGHENKTYNLVSNQPWT 205
>pdb|2VRB|A Chain A, Crystal Structure Of The Citrobacter Sp. Triphenylmethane
Reductase Complexed With Nadp(H)
Length = 287
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 37/86 (43%), Gaps = 11/86 (12%)
Query: 485 KLKGEDLIRESGIPYTIVRPCALTE----------EPAGADLIFDQGDNITGKISREEVA 534
L E IR + IPYT +R T+ +GA ++ + G I ++R E+A
Sbjct: 121 HLATEYAIRTTNIPYTFLRNALYTDFFVNEGLRASTESGA-IVTNAGSGIVNSVTRNELA 179
Query: 535 RICVAALESPFALDKTFEVKSTIPFS 560
L +KT+ + S P++
Sbjct: 180 LAAATVLTEEGHENKTYNLVSNQPWT 205
>pdb|3QVO|A Chain A, Structure Of A Rossmann-Fold Nad(P)-Binding Family Protein
From Shigella Flexneri
Length = 236
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 487 KGEDLIRESGIPYTIVRPCALTEEPAGADLIFDQGDNITGKI-SREEVARICVAALESP 544
+ D I SG+ YTI+RP LT+E + + + G I SR+ VA + ++ P
Sbjct: 153 RAADAIEASGLEYTILRPAWLTDEDIIDYELTSRNEPFKGTIVSRKSVAALITDIIDKP 211
>pdb|2G29|A Chain A, Crystal Structure Of The Periplasmic Nitrate-binding
Protein Nrta From Synechocystis Pcc 6803
Length = 417
Score = 28.9 bits (63), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 23/47 (48%)
Query: 524 ITGKISREEVARICVAALESPFALDKTFEVKSTIPFSESFTVDPENP 570
I K++RE++ R ALE P + + F + T DPENP
Sbjct: 357 IVDKVNREDLWREAAQALEVPADQIPSSPSRGIETFFDGITFDPENP 403
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
From Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
Effector Protein From Yersinia Pestis
Length = 454
Score = 28.9 bits (63), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 4/45 (8%)
Query: 229 GDSPEMVEYLGMRNLINAVKGSVGLQNGKLL--FGFEENSLKELP 271
D P ++EYLG+ N N ++ LQN L + NSLK+LP
Sbjct: 127 SDLPPLLEYLGVSN--NQLEKLPELQNSSFLKIIDVDNNSLKKLP 169
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.137 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,841,637
Number of Sequences: 62578
Number of extensions: 769555
Number of successful extensions: 2278
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 2270
Number of HSP's gapped (non-prelim): 21
length of query: 600
length of database: 14,973,337
effective HSP length: 104
effective length of query: 496
effective length of database: 8,465,225
effective search space: 4198751600
effective search space used: 4198751600
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)